Query 003819
Match_columns 793
No_of_seqs 391 out of 2075
Neff 6.7
Searched_HMMs 46136
Date Thu Mar 28 12:37:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003819.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003819hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2263 Methionine synthase II 100.0 5E-216 1E-220 1704.3 63.2 764 1-792 2-765 (765)
2 PLN02475 5-methyltetrahydropte 100.0 5E-195 1E-199 1709.7 85.6 764 1-793 1-766 (766)
3 PRK05222 5-methyltetrahydropte 100.0 2E-189 4E-194 1672.5 84.1 754 1-790 2-757 (758)
4 TIGR01371 met_syn_B12ind 5-met 100.0 8E-186 2E-190 1639.4 83.6 748 6-788 1-750 (750)
5 cd03312 CIMS_N_terminal_like C 100.0 2.1E-95 4E-100 803.8 38.6 360 2-367 1-360 (360)
6 PF08267 Meth_synt_1: Cobalami 100.0 6.7E-90 1.5E-94 738.1 28.1 308 2-316 1-309 (310)
7 COG0620 MetE Methionine syntha 100.0 1.1E-80 2.5E-85 674.4 34.4 330 428-788 1-330 (330)
8 PRK01207 methionine synthase; 100.0 1.6E-76 3.4E-81 640.4 36.4 314 431-789 3-343 (343)
9 PRK09121 5-methyltetrahydropte 100.0 1E-66 2.2E-71 571.4 36.2 317 431-790 2-339 (339)
10 PRK08575 5-methyltetrahydropte 100.0 1.8E-63 3.9E-68 544.0 35.0 308 3-366 6-321 (326)
11 PF01717 Meth_synt_2: Cobalami 100.0 1.8E-62 4E-67 537.0 32.8 322 432-784 1-324 (324)
12 PRK08575 5-methyltetrahydropte 100.0 3.9E-61 8.5E-66 525.5 35.2 313 431-786 2-323 (326)
13 PRK06233 hypothetical protein; 100.0 4.5E-60 9.8E-65 525.2 34.6 324 430-785 7-370 (372)
14 PRK06520 5-methyltetrahydropte 100.0 1.3E-59 2.9E-64 520.4 34.2 325 429-785 5-367 (368)
15 PRK04326 methionine synthase; 100.0 4.9E-58 1.1E-62 503.3 37.6 324 426-790 3-327 (330)
16 cd03311 CIMS_C_terminal_like C 100.0 3.2E-57 6.8E-62 497.3 28.2 317 433-783 1-331 (332)
17 cd03312 CIMS_N_terminal_like C 100.0 4.1E-53 8.9E-58 467.4 34.8 300 434-772 2-332 (360)
18 TIGR01371 met_syn_B12ind 5-met 100.0 5.2E-51 1.1E-55 485.8 32.6 316 2-369 424-748 (750)
19 PRK00957 methionine synthase; 100.0 1.5E-50 3.4E-55 439.3 31.3 296 431-786 1-305 (305)
20 PRK09121 5-methyltetrahydropte 100.0 9.1E-49 2E-53 429.6 32.8 313 2-369 5-335 (339)
21 PRK04326 methionine synthase; 100.0 1.5E-48 3.3E-53 428.2 32.2 309 2-369 10-323 (330)
22 PRK05222 5-methyltetrahydropte 100.0 7.8E-48 1.7E-52 459.1 36.2 314 433-786 3-363 (758)
23 PLN02475 5-methyltetrahydropte 100.0 5.6E-48 1.2E-52 457.7 34.0 314 434-785 2-369 (766)
24 PRK06052 5-methyltetrahydropte 100.0 1.4E-47 3E-52 408.1 26.7 290 432-788 4-343 (344)
25 cd03310 CIMS_like CIMS - Cobal 100.0 5.8E-47 1.3E-51 413.8 25.7 307 1-366 1-320 (321)
26 PRK06520 5-methyltetrahydropte 100.0 3.4E-46 7.4E-51 413.5 31.0 321 3-367 11-366 (368)
27 PRK06233 hypothetical protein; 100.0 2.5E-45 5.4E-50 407.4 31.2 323 3-367 12-369 (372)
28 cd03311 CIMS_C_terminal_like C 100.0 2.6E-44 5.7E-49 395.0 25.8 314 2-366 2-331 (332)
29 COG0620 MetE Methionine syntha 100.0 2.2E-43 4.7E-48 383.2 30.7 315 2-369 7-328 (330)
30 cd03310 CIMS_like CIMS - Cobal 100.0 9.5E-44 2.1E-48 388.5 26.0 305 434-783 2-320 (321)
31 PRK01207 methionine synthase; 100.0 9.1E-42 2E-46 369.8 32.0 306 2-369 5-340 (343)
32 PF01717 Meth_synt_2: Cobalami 100.0 1.7E-41 3.7E-46 371.5 28.3 311 2-366 3-323 (324)
33 PRK00957 methionine synthase; 100.0 9.3E-40 2E-44 354.9 30.5 294 2-368 3-304 (305)
34 PF08267 Meth_synt_1: Cobalami 100.0 4.8E-40 1E-44 353.2 26.6 277 434-749 2-309 (310)
35 PRK06438 hypothetical protein; 100.0 3.1E-36 6.7E-41 315.6 24.5 282 432-782 2-291 (292)
36 PRK06438 hypothetical protein; 100.0 2.3E-35 5E-40 309.0 23.9 279 1-364 2-290 (292)
37 PRK06052 5-methyltetrahydropte 100.0 1.3E-31 2.8E-36 286.0 24.5 293 3-369 7-341 (344)
38 KOG2263 Methionine synthase II 100.0 1E-29 2.2E-34 273.8 23.5 296 434-766 3-334 (765)
39 cd00465 URO-D_CIMS_like The UR 99.9 5.5E-26 1.2E-30 246.7 18.5 266 496-783 29-305 (306)
40 cd00465 URO-D_CIMS_like The UR 99.8 2.3E-18 5E-23 187.0 17.2 217 110-335 63-291 (306)
41 cd03465 URO-D_like The URO-D _ 99.7 7.5E-17 1.6E-21 177.0 17.9 192 580-784 126-330 (330)
42 PRK06252 methylcobalamin:coenz 99.7 6.3E-16 1.4E-20 170.7 18.1 191 579-786 137-337 (339)
43 TIGR01463 mtaA_cmuA methyltran 99.7 6.5E-16 1.4E-20 170.7 17.8 203 567-785 123-338 (340)
44 cd03307 Mta_CmuA_like MtaA_Cmu 99.5 8.5E-14 1.8E-18 153.1 16.6 189 579-784 128-326 (326)
45 PRK00115 hemE uroporphyrinogen 99.5 7.2E-13 1.6E-17 146.9 19.3 191 579-785 137-344 (346)
46 PLN02433 uroporphyrinogen deca 99.5 2.5E-12 5.5E-17 142.5 19.8 192 580-788 131-340 (345)
47 TIGR01464 hemE uroporphyrinoge 99.5 2.2E-12 4.7E-17 142.6 18.6 187 580-783 132-337 (338)
48 cd00717 URO-D Uroporphyrinogen 99.4 1.9E-12 4E-17 143.0 17.6 188 580-783 129-334 (335)
49 PF01208 URO-D: Uroporphyrinog 99.4 2.2E-12 4.8E-17 142.6 13.2 269 489-784 43-342 (343)
50 cd03308 CmuA_CmuC_like CmuA_Cm 99.1 5.9E-10 1.3E-14 125.1 16.0 193 580-783 171-377 (378)
51 COG0407 HemE Uroporphyrinogen- 99.0 5.2E-09 1.1E-13 115.0 17.0 192 580-787 141-350 (352)
52 cd03309 CmuC_like CmuC_like. P 99.0 9.6E-09 2.1E-13 112.7 17.2 186 582-774 115-314 (321)
53 cd03465 URO-D_like The URO-D _ 98.9 1.7E-08 3.7E-13 111.0 17.0 174 149-331 126-313 (330)
54 PRK06252 methylcobalamin:coenz 98.6 6E-07 1.3E-11 99.4 16.4 185 137-331 123-318 (339)
55 TIGR01463 mtaA_cmuA methyltran 98.6 1.2E-06 2.6E-11 97.2 18.4 184 136-331 122-320 (340)
56 cd03307 Mta_CmuA_like MtaA_Cmu 98.2 1.6E-05 3.5E-10 87.6 14.9 185 137-331 114-309 (326)
57 PF01208 URO-D: Uroporphyrinog 98.2 2.9E-05 6.4E-10 86.0 16.7 189 136-337 121-328 (343)
58 PLN02433 uroporphyrinogen deca 98.2 0.00011 2.4E-09 81.7 20.7 186 136-331 115-319 (345)
59 PRK00115 hemE uroporphyrinogen 98.2 0.00017 3.7E-09 80.3 20.9 186 136-331 122-326 (346)
60 TIGR01464 hemE uroporphyrinoge 98.0 0.00021 4.5E-09 79.3 17.7 187 135-331 115-321 (338)
61 cd00717 URO-D Uroporphyrinogen 97.9 0.00029 6.2E-09 78.1 16.1 186 136-331 113-318 (335)
62 KOG2872 Uroporphyrinogen decar 97.8 0.00016 3.5E-09 76.1 11.5 190 580-786 145-357 (359)
63 cd03309 CmuC_like CmuC_like. P 97.5 0.0015 3.2E-08 72.1 14.6 175 150-331 114-304 (321)
64 COG0407 HemE Uroporphyrinogen- 96.4 0.088 1.9E-06 58.6 15.5 187 135-331 124-330 (352)
65 cd03308 CmuA_CmuC_like CmuA_Cm 95.5 0.27 5.8E-06 55.7 15.1 174 149-331 171-359 (378)
66 PRK08745 ribulose-phosphate 3- 93.6 0.96 2.1E-05 47.5 12.5 88 614-713 17-108 (223)
67 PRK08091 ribulose-phosphate 3- 93.4 0.77 1.7E-05 48.3 11.4 140 614-779 26-170 (228)
68 PRK08005 epimerase; Validated 92.5 1.3 2.8E-05 46.0 11.4 87 614-713 14-104 (210)
69 PLN02334 ribulose-phosphate 3- 91.4 3.9 8.4E-05 42.9 13.8 75 614-699 21-97 (229)
70 PRK08883 ribulose-phosphate 3- 91.1 2.5 5.4E-05 44.3 11.8 88 614-713 13-104 (220)
71 PF02581 TMP-TENI: Thiamine mo 90.7 5.6 0.00012 40.0 13.7 110 188-326 14-123 (180)
72 PF00834 Ribul_P_3_epim: Ribul 89.6 2 4.3E-05 44.4 9.4 96 614-725 13-112 (201)
73 COG0036 Rpe Pentose-5-phosphat 89.1 5.4 0.00012 41.6 12.1 143 614-781 17-163 (220)
74 COG0646 MetH Methionine syntha 87.6 29 0.00062 37.9 16.6 157 606-782 136-309 (311)
75 cd00739 DHPS DHPS subgroup of 87.5 32 0.00069 36.9 17.2 151 616-778 27-191 (257)
76 PRK14057 epimerase; Provisiona 87.3 6.1 0.00013 42.3 11.4 85 614-713 33-121 (254)
77 PTZ00170 D-ribulose-5-phosphat 86.0 13 0.00029 39.0 13.2 77 614-702 20-98 (228)
78 PRK11613 folP dihydropteroate 84.6 52 0.0011 35.9 17.1 153 615-778 40-204 (282)
79 COG0646 MetH Methionine syntha 84.1 9.1 0.0002 41.6 10.8 143 181-330 138-297 (311)
80 PRK09722 allulose-6-phosphate 83.9 14 0.00031 38.9 12.2 86 614-713 16-106 (229)
81 PF00809 Pterin_bind: Pterin b 83.5 49 0.0011 34.3 15.9 152 619-780 25-190 (210)
82 cd00564 TMP_TenI Thiamine mono 82.7 11 0.00024 37.6 10.6 111 187-326 13-123 (196)
83 TIGR01496 DHPS dihydropteroate 82.3 76 0.0016 34.0 18.9 154 614-780 24-191 (257)
84 cd07944 DRE_TIM_HOA_like 4-hyd 80.9 76 0.0017 34.2 16.7 154 616-780 23-178 (266)
85 PRK08195 4-hyroxy-2-oxovalerat 79.7 81 0.0017 35.3 16.9 149 615-780 27-184 (337)
86 PRK03512 thiamine-phosphate py 78.4 15 0.00032 38.2 9.9 107 191-326 24-130 (211)
87 KOG2872 Uroporphyrinogen decar 77.8 9 0.00019 41.4 8.0 161 179-361 186-356 (359)
88 cd00564 TMP_TenI Thiamine mono 77.2 45 0.00098 33.1 13.0 71 614-703 13-83 (196)
89 PRK13753 dihydropteroate synth 76.9 1.2E+02 0.0026 33.1 17.3 149 616-780 28-196 (279)
90 PF07745 Glyco_hydro_53: Glyco 75.2 1.5E+02 0.0031 33.3 18.4 231 503-785 9-283 (332)
91 KOG3111 D-ribulose-5-phosphate 74.8 62 0.0014 33.2 12.6 89 614-713 18-110 (224)
92 PRK08999 hypothetical protein; 74.5 23 0.0005 38.7 10.8 109 188-326 146-254 (312)
93 PRK07695 transcriptional regul 73.9 52 0.0011 33.6 12.5 105 190-326 19-123 (201)
94 PF01729 QRPTase_C: Quinolinat 73.8 18 0.00039 36.4 8.8 64 191-267 92-155 (169)
95 cd00423 Pterin_binding Pterin 73.7 1.3E+02 0.0028 32.1 18.2 155 614-779 25-192 (258)
96 TIGR02082 metH 5-methyltetrahy 73.4 83 0.0018 41.1 16.6 152 607-780 142-313 (1178)
97 PRK00043 thiE thiamine-phospha 73.1 30 0.00064 35.3 10.6 68 615-701 23-90 (212)
98 PRK02615 thiamine-phosphate py 71.6 29 0.00062 39.0 10.6 110 188-326 159-268 (347)
99 PRK10812 putative DNAse; Provi 70.1 1.4E+02 0.0029 32.2 15.1 128 235-385 124-254 (265)
100 TIGR00693 thiE thiamine-phosph 69.9 43 0.00093 33.8 10.8 109 188-326 15-124 (196)
101 PLN02334 ribulose-phosphate 3- 69.7 68 0.0015 33.5 12.5 73 188-267 22-97 (229)
102 PRK06256 biotin synthase; Vali 68.3 1.8E+02 0.0039 32.1 16.2 135 191-335 99-246 (336)
103 PRK08195 4-hyroxy-2-oxovalerat 68.3 96 0.0021 34.7 13.9 135 190-336 29-174 (337)
104 PRK00043 thiE thiamine-phospha 68.0 13 0.00028 37.9 6.6 68 188-269 23-90 (212)
105 TIGR03217 4OH_2_O_val_ald 4-hy 66.1 2.2E+02 0.0049 31.7 19.1 149 615-780 26-183 (333)
106 PRK06512 thiamine-phosphate py 66.0 89 0.0019 32.7 12.4 111 188-326 28-139 (221)
107 cd00530 PTE Phosphotriesterase 65.5 1.6E+02 0.0036 31.5 14.9 147 182-332 97-249 (293)
108 PLN02898 HMP-P kinase/thiamin- 65.0 45 0.00098 39.3 11.1 110 188-326 309-418 (502)
109 cd04724 Tryptophan_synthase_al 64.0 2E+02 0.0043 30.4 16.6 82 614-699 15-111 (242)
110 PF06187 DUF993: Protein of un 63.9 20 0.00044 39.5 7.1 108 179-291 125-250 (382)
111 COG3462 Predicted membrane pro 63.9 7.6 0.00017 35.8 3.3 29 14-42 88-116 (117)
112 PRK13585 1-(5-phosphoribosyl)- 62.3 57 0.0012 34.2 10.2 124 190-326 36-170 (241)
113 PRK01060 endonuclease IV; Prov 59.2 63 0.0014 34.5 10.2 29 671-699 3-32 (281)
114 TIGR00262 trpA tryptophan synt 58.6 2.2E+02 0.0048 30.5 14.0 80 618-699 29-122 (256)
115 TIGR01163 rpe ribulose-phospha 58.4 2E+02 0.0044 29.0 13.3 75 613-699 11-86 (210)
116 TIGR00284 dihydropteroate synt 58.2 3.3E+02 0.0072 32.2 16.3 126 613-763 165-291 (499)
117 PRK09490 metH B12-dependent me 57.9 2.8E+02 0.006 36.6 16.8 153 608-780 159-329 (1229)
118 COG0352 ThiE Thiamine monophos 57.7 49 0.0011 34.5 8.5 105 189-317 24-128 (211)
119 PRK10508 hypothetical protein; 56.9 18 0.00038 40.4 5.5 48 733-784 285-332 (333)
120 TIGR03217 4OH_2_O_val_ald 4-hy 56.6 2.1E+02 0.0045 32.0 13.8 135 190-336 28-173 (333)
121 COG0352 ThiE Thiamine monophos 55.8 87 0.0019 32.7 10.0 66 617-701 25-90 (211)
122 cd07943 DRE_TIM_HOA 4-hydroxy- 55.6 2.8E+02 0.0062 29.5 16.7 146 616-778 25-179 (263)
123 cd00530 PTE Phosphotriesterase 55.5 1.1E+02 0.0024 32.9 11.3 93 670-765 150-249 (293)
124 PRK05848 nicotinate-nucleotide 55.4 44 0.00095 36.3 8.0 67 190-269 193-259 (273)
125 cd00429 RPE Ribulose-5-phospha 54.4 68 0.0015 32.5 9.0 74 615-699 14-87 (211)
126 TIGR02082 metH 5-methyltetrahy 54.1 1.5E+02 0.0034 38.7 13.8 127 181-313 143-285 (1178)
127 PF00682 HMGL-like: HMGL-like 54.0 1.2E+02 0.0027 31.5 11.1 142 616-779 17-176 (237)
128 cd03174 DRE_TIM_metallolyase D 53.5 2.9E+02 0.0063 29.0 17.9 150 616-780 22-186 (265)
129 PF01729 QRPTase_C: Quinolinat 52.8 55 0.0012 32.9 7.7 65 617-699 91-155 (169)
130 cd04724 Tryptophan_synthase_al 52.4 82 0.0018 33.3 9.4 77 187-266 15-110 (242)
131 PRK09490 metH B12-dependent me 51.4 1.3E+02 0.0029 39.3 12.5 127 181-313 159-301 (1229)
132 PRK07428 nicotinate-nucleotide 50.9 53 0.0012 35.9 7.8 65 191-268 208-272 (288)
133 PRK03512 thiamine-phosphate py 50.2 1.1E+02 0.0025 31.7 9.9 63 619-700 25-87 (211)
134 PRK12290 thiE thiamine-phospha 50.1 94 0.002 36.0 9.8 108 190-326 221-328 (437)
135 cd07939 DRE_TIM_NifV Streptomy 49.7 3.5E+02 0.0075 28.8 18.4 139 616-780 23-179 (259)
136 TIGR02660 nifV_homocitr homoci 48.9 3.6E+02 0.0077 30.4 14.3 140 618-780 28-182 (365)
137 PRK05848 nicotinate-nucleotide 47.5 71 0.0015 34.7 8.1 64 617-699 193-257 (273)
138 COG2355 Zn-dependent dipeptida 47.3 4.4E+02 0.0095 29.3 16.8 155 619-785 114-288 (313)
139 PF09851 SHOCT: Short C-termin 47.0 40 0.00086 24.1 4.0 27 15-41 3-29 (31)
140 PRK06512 thiamine-phosphate py 46.9 1.9E+02 0.0042 30.2 11.0 65 617-700 30-95 (221)
141 cd00958 DhnA Class I fructose- 45.1 1E+02 0.0022 32.2 8.7 125 190-327 80-216 (235)
142 COG0084 TatD Mg-dependent DNas 45.0 2E+02 0.0044 30.9 10.9 51 307-362 185-235 (256)
143 PRK12928 lipoyl synthase; Prov 44.8 4.5E+02 0.0098 28.7 15.4 140 190-336 94-252 (290)
144 PRK05581 ribulose-phosphate 3- 44.7 1.6E+02 0.0035 30.1 10.1 75 614-699 17-91 (220)
145 PRK02083 imidazole glycerol ph 44.6 2.7E+02 0.0058 29.5 11.9 127 191-326 35-174 (253)
146 PLN02389 biotin synthase 44.5 5.3E+02 0.011 29.4 15.0 147 618-778 124-289 (379)
147 cd04731 HisF The cyclase subun 44.2 2.5E+02 0.0055 29.3 11.6 126 191-326 32-170 (243)
148 PF02581 TMP-TENI: Thiamine mo 44.1 3.4E+02 0.0074 27.1 14.1 110 616-760 15-124 (180)
149 TIGR02090 LEU1_arch isopropylm 43.9 3.5E+02 0.0075 30.5 13.2 140 189-358 25-183 (363)
150 cd07942 DRE_TIM_LeuA Mycobacte 42.7 2.3E+02 0.0049 31.0 11.1 75 618-706 28-106 (284)
151 PRK08645 bifunctional homocyst 41.9 2.4E+02 0.0052 34.2 12.2 135 182-330 121-273 (612)
152 cd04735 OYE_like_4_FMN Old yel 41.8 2.7E+02 0.0059 31.2 11.9 91 609-699 140-255 (353)
153 KOG3338 Divalent cation tolera 41.6 20 0.00044 34.2 2.4 90 35-144 55-144 (153)
154 PRK08508 biotin synthase; Prov 41.3 4.9E+02 0.011 28.1 16.2 124 618-758 48-186 (279)
155 PRK06559 nicotinate-nucleotide 41.0 70 0.0015 35.0 6.7 62 617-699 208-269 (290)
156 cd07937 DRE_TIM_PC_TC_5S Pyruv 40.9 4.9E+02 0.011 28.0 17.5 150 618-780 26-189 (275)
157 TIGR02320 PEP_mutase phosphoen 40.5 5.3E+02 0.011 28.2 16.9 149 614-788 93-261 (285)
158 PRK11858 aksA trans-homoaconit 40.3 6E+02 0.013 28.8 18.0 141 617-780 30-185 (378)
159 PRK05581 ribulose-phosphate 3- 40.0 68 0.0015 32.9 6.4 71 188-268 18-94 (220)
160 PRK15108 biotin synthase; Prov 39.7 3.8E+02 0.0082 30.0 12.6 114 191-315 84-211 (345)
161 PRK08385 nicotinate-nucleotide 39.3 1.3E+02 0.0029 32.7 8.6 69 190-269 193-261 (278)
162 PRK06978 nicotinate-nucleotide 39.2 78 0.0017 34.7 6.8 62 617-699 216-277 (294)
163 PF03437 BtpA: BtpA family; I 38.5 5.3E+02 0.012 27.7 16.7 146 608-764 24-186 (254)
164 PF00834 Ribul_P_3_epim: Ribul 38.2 1.1E+02 0.0025 31.5 7.6 143 188-367 14-162 (201)
165 COG4586 ABC-type uncharacteriz 38.2 1E+02 0.0023 33.6 7.3 80 200-292 175-258 (325)
166 PRK09016 quinolinate phosphori 38.1 90 0.002 34.3 7.1 62 617-699 219-280 (296)
167 cd00408 DHDPS-like Dihydrodipi 37.9 3.6E+02 0.0079 28.8 11.8 107 613-728 18-131 (281)
168 COG1099 Predicted metal-depend 37.7 1.6E+02 0.0034 31.2 8.3 85 669-766 127-217 (254)
169 PRK07896 nicotinate-nucleotide 37.6 1.4E+02 0.003 32.8 8.4 66 191-269 211-276 (289)
170 PRK07535 methyltetrahydrofolat 37.6 5.5E+02 0.012 27.6 17.4 147 614-780 26-182 (261)
171 PF05120 GvpG: Gas vesicle pro 37.4 77 0.0017 27.9 5.2 36 14-49 34-69 (79)
172 PRK02615 thiamine-phosphate py 37.0 2.3E+02 0.0051 31.9 10.3 64 618-700 162-225 (347)
173 COG3462 Predicted membrane pro 36.9 38 0.00083 31.4 3.3 25 446-498 91-115 (117)
174 TIGR00735 hisF imidazoleglycer 36.9 3.8E+02 0.0083 28.4 11.7 127 191-326 35-176 (254)
175 PRK07896 nicotinate-nucleotide 36.6 1.1E+02 0.0024 33.5 7.5 64 618-699 211-274 (289)
176 PRK08999 hypothetical protein; 36.6 1.6E+02 0.0036 32.0 9.0 65 617-700 148-212 (312)
177 cd00958 DhnA Class I fructose- 36.4 5.1E+02 0.011 26.9 13.7 124 617-760 80-216 (235)
178 TIGR01334 modD putative molybd 36.3 1.5E+02 0.0033 32.2 8.4 65 190-267 199-263 (277)
179 PF09851 SHOCT: Short C-termin 36.3 73 0.0016 22.7 4.0 26 444-497 3-28 (31)
180 PTZ00170 D-ribulose-5-phosphat 36.1 2.1E+02 0.0046 30.0 9.4 77 187-270 20-98 (228)
181 cd07948 DRE_TIM_HCS Saccharomy 35.7 5.8E+02 0.013 27.4 17.9 140 617-779 26-180 (262)
182 TIGR02321 Pphn_pyruv_hyd phosp 35.3 5.3E+02 0.011 28.3 12.5 76 622-701 31-112 (290)
183 PRK03620 5-dehydro-4-deoxygluc 35.1 3.5E+02 0.0076 29.5 11.3 138 581-742 7-153 (303)
184 PRK09517 multifunctional thiam 35.0 4.1E+02 0.0088 33.2 13.0 111 190-326 23-136 (755)
185 cd00951 KDGDH 5-dehydro-4-deox 34.6 4.9E+02 0.011 28.2 12.3 120 613-743 21-147 (289)
186 PRK14847 hypothetical protein; 34.3 4.5E+02 0.0097 29.5 11.8 142 620-780 61-233 (333)
187 PRK03170 dihydrodipicolinate s 34.2 6.1E+02 0.013 27.3 12.9 79 613-699 22-103 (292)
188 PRK06096 molybdenum transport 33.6 1.7E+02 0.0037 32.0 8.3 67 190-269 200-266 (284)
189 PRK08385 nicotinate-nucleotide 33.5 2.1E+02 0.0045 31.2 8.9 66 617-699 193-259 (278)
190 PRK06106 nicotinate-nucleotide 33.1 1.2E+02 0.0027 33.0 7.1 60 618-699 206-266 (281)
191 PRK08508 biotin synthase; Prov 32.9 6.5E+02 0.014 27.1 17.1 131 194-335 51-196 (279)
192 COG0621 MiaB 2-methylthioadeni 32.8 7.4E+02 0.016 28.9 13.7 161 614-789 177-372 (437)
193 TIGR00693 thiE thiamine-phosph 32.0 4.2E+02 0.0092 26.5 10.6 65 617-700 17-81 (196)
194 COG0157 NadC Nicotinate-nucleo 31.9 1.2E+02 0.0027 32.8 6.8 62 618-699 200-262 (280)
195 cd02803 OYE_like_FMN_family Ol 31.8 4.4E+02 0.0096 28.8 11.5 92 608-699 136-248 (327)
196 TIGR03249 KdgD 5-dehydro-4-deo 31.5 5.8E+02 0.013 27.7 12.2 113 580-713 4-124 (296)
197 PRK12290 thiE thiamine-phospha 30.7 4.1E+02 0.0088 30.9 11.0 63 619-700 223-285 (437)
198 PRK11320 prpB 2-methylisocitra 30.2 7.7E+02 0.017 27.1 17.7 149 615-787 95-254 (292)
199 TIGR02129 hisA_euk phosphoribo 30.1 4.7E+02 0.01 28.2 10.7 89 191-296 43-137 (253)
200 cd00405 PRAI Phosphoribosylant 29.4 1.6E+02 0.0034 30.1 7.0 95 191-293 11-106 (203)
201 cd01096 Alkanal_monooxygenase 29.3 90 0.002 34.2 5.5 41 733-776 273-313 (315)
202 PRK07428 nicotinate-nucleotide 29.2 1E+02 0.0022 33.8 5.7 65 617-699 207-271 (288)
203 cd02930 DCR_FMN 2,4-dienoyl-Co 29.2 5.6E+02 0.012 28.6 11.9 96 602-698 127-243 (353)
204 cd07944 DRE_TIM_HOA_like 4-hyd 29.2 7.4E+02 0.016 26.6 16.1 136 190-336 24-168 (266)
205 COG1031 Uncharacterized Fe-S o 29.1 5.9E+02 0.013 29.8 11.7 115 187-323 219-354 (560)
206 TIGR02660 nifV_homocitr homoci 28.4 8.9E+02 0.019 27.2 15.7 130 190-336 27-172 (365)
207 PRK06543 nicotinate-nucleotide 28.3 1.5E+02 0.0032 32.4 6.7 62 617-699 204-265 (281)
208 PRK15124 2'-5' RNA ligase; Pro 28.3 3.5E+02 0.0076 26.9 9.1 95 211-318 10-114 (176)
209 PRK06256 biotin synthase; Vali 28.2 8.3E+02 0.018 26.8 16.2 137 614-766 95-249 (336)
210 PF00682 HMGL-like: HMGL-like 28.1 4.8E+02 0.01 27.0 10.5 146 190-360 18-181 (237)
211 cd00950 DHDPS Dihydrodipicolin 28.1 5.3E+02 0.011 27.6 11.1 93 613-713 21-120 (284)
212 TIGR03558 oxido_grp_1 lucifera 27.8 87 0.0019 34.4 5.1 45 732-780 278-322 (323)
213 PRK10812 putative DNAse; Provi 27.8 7.8E+02 0.017 26.4 16.4 83 670-765 125-210 (265)
214 COG3010 NanE Putative N-acetyl 27.7 1.9E+02 0.0041 30.2 6.9 145 567-757 54-208 (229)
215 PRK06096 molybdenum transport 27.4 1.6E+02 0.0034 32.3 6.7 65 617-699 200-264 (284)
216 PLN02898 HMP-P kinase/thiamin- 27.3 3.9E+02 0.0084 31.5 10.6 64 618-700 312-375 (502)
217 PRK09875 putative hydrolase; P 27.1 8.6E+02 0.019 26.6 15.7 89 670-765 153-248 (292)
218 cd00739 DHPS DHPS subgroup of 27.0 7.8E+02 0.017 26.4 11.9 65 192-262 30-98 (257)
219 TIGR01859 fruc_bis_ald_ fructo 26.9 8.5E+02 0.018 26.5 16.5 80 615-704 29-109 (282)
220 TIGR00695 uxuA mannonate dehyd 26.8 6.2E+02 0.013 29.1 11.5 67 614-688 44-111 (394)
221 PLN02716 nicotinate-nucleotide 26.6 2.3E+02 0.0049 31.4 7.8 72 191-269 215-292 (308)
222 PRK11449 putative deoxyribonuc 26.6 7.7E+02 0.017 26.3 11.9 108 236-362 128-237 (258)
223 COG5016 Pyruvate/oxaloacetate 26.5 1.8E+02 0.0039 33.3 7.0 74 614-699 157-231 (472)
224 COG2513 PrpB PEP phosphonomuta 26.4 8.9E+02 0.019 26.6 12.1 141 619-781 31-178 (289)
225 TIGR02317 prpB methylisocitrat 26.3 8.8E+02 0.019 26.5 17.6 147 616-787 91-249 (285)
226 TIGR00078 nadC nicotinate-nucl 26.2 2.4E+02 0.0052 30.4 7.9 62 190-267 189-250 (265)
227 PRK07534 methionine synthase I 26.1 8.1E+02 0.018 27.4 12.3 136 182-331 127-282 (336)
228 PRK08005 epimerase; Validated 25.5 7.8E+02 0.017 25.6 13.5 141 187-366 14-162 (210)
229 cd02932 OYE_YqiM_FMN Old yello 25.5 5.3E+02 0.011 28.6 10.8 96 602-698 144-260 (336)
230 cd00377 ICL_PEPM Members of th 25.5 8.2E+02 0.018 25.9 12.1 144 619-781 22-172 (243)
231 cd03174 DRE_TIM_metallolyase D 25.3 7.9E+02 0.017 25.6 13.8 149 190-360 23-190 (265)
232 PRK09016 quinolinate phosphori 25.3 2.4E+02 0.0051 31.1 7.6 63 191-269 220-282 (296)
233 PRK05742 nicotinate-nucleotide 25.0 2.3E+02 0.0049 30.9 7.4 63 191-269 201-263 (277)
234 PF00036 EF-hand_1: EF hand; 24.8 57 0.0012 22.8 1.9 25 16-40 1-28 (29)
235 TIGR01212 radical SAM protein, 24.8 9.3E+02 0.02 26.3 12.4 116 617-755 127-256 (302)
236 cd00429 RPE Ribulose-5-phospha 24.8 2.7E+02 0.0058 28.0 7.7 20 188-207 14-33 (211)
237 PLN03228 methylthioalkylmalate 24.6 9.2E+02 0.02 28.6 12.8 141 618-779 111-278 (503)
238 PRK06559 nicotinate-nucleotide 24.6 2.8E+02 0.0061 30.5 8.0 64 190-269 208-271 (290)
239 TIGR02319 CPEP_Pphonmut carbox 24.5 9.7E+02 0.021 26.3 17.6 148 616-788 95-254 (294)
240 PRK08645 bifunctional homocyst 24.4 1.3E+03 0.029 27.9 16.1 135 609-764 121-274 (612)
241 PLN02716 nicotinate-nucleotide 24.4 1.9E+02 0.0041 32.0 6.7 71 617-699 214-290 (308)
242 PRK08091 ribulose-phosphate 3- 24.4 5E+02 0.011 27.4 9.6 138 187-366 26-174 (228)
243 PRK12331 oxaloacetate decarbox 24.3 3.5E+02 0.0075 31.6 9.2 74 613-697 154-227 (448)
244 KOG0447 Dynamin-like GTP bindi 24.2 2.1E+02 0.0046 33.9 7.2 217 523-747 286-543 (980)
245 PRK13347 coproporphyrinogen II 24.1 1.2E+03 0.025 27.1 15.0 147 606-760 78-241 (453)
246 PRK12330 oxaloacetate decarbox 23.5 3.5E+02 0.0077 32.0 9.1 74 614-699 156-232 (499)
247 TIGR01334 modD putative molybd 23.5 3.1E+02 0.0066 29.9 8.1 65 617-699 199-263 (277)
248 smart00518 AP2Ec AP endonuclea 23.4 8.1E+02 0.017 25.8 11.4 93 138-242 47-140 (273)
249 TIGR02319 CPEP_Pphonmut carbox 23.3 1E+03 0.022 26.2 12.7 76 622-701 32-114 (294)
250 cd04735 OYE_like_4_FMN Old yel 23.1 9.8E+02 0.021 26.7 12.4 31 486-517 134-165 (353)
251 PRK07455 keto-hydroxyglutarate 23.1 4.6E+02 0.0099 26.6 8.9 101 618-750 29-129 (187)
252 cd00423 Pterin_binding Pterin 23.1 8.1E+02 0.018 26.0 11.3 134 190-332 28-179 (258)
253 cd00452 KDPG_aldolase KDPG and 22.7 7.9E+02 0.017 24.7 10.6 107 616-759 19-125 (190)
254 PRK03906 mannonate dehydratase 22.4 8.2E+02 0.018 28.0 11.5 104 580-692 175-291 (385)
255 PRK14041 oxaloacetate decarbox 22.3 4.1E+02 0.0089 31.2 9.3 73 614-699 154-228 (467)
256 PRK01033 imidazole glycerol ph 22.2 6.7E+02 0.015 26.7 10.4 127 191-333 35-182 (258)
257 TIGR03858 LLM_2I7G probable ox 22.1 1.4E+02 0.0031 33.0 5.4 46 731-778 283-328 (337)
258 cd01301 rDP_like renal dipepti 22.1 1.1E+03 0.023 26.0 16.6 132 618-761 118-265 (309)
259 PRK09240 thiH thiamine biosynt 21.9 1.2E+03 0.025 26.3 14.4 74 614-700 108-183 (371)
260 PRK09856 fructoselysine 3-epim 21.6 9.2E+02 0.02 25.3 11.4 20 680-699 14-33 (275)
261 PF01487 DHquinase_I: Type I 3 21.6 8.9E+02 0.019 24.9 12.6 127 615-759 12-153 (224)
262 TIGR00970 leuA_yeast 2-isoprop 21.4 3.6E+02 0.0077 32.5 8.8 97 619-750 54-154 (564)
263 PRK06543 nicotinate-nucleotide 21.3 3.6E+02 0.0078 29.5 8.1 64 190-269 204-267 (281)
264 cd07948 DRE_TIM_HCS Saccharomy 21.3 1E+03 0.022 25.5 16.0 126 190-331 26-167 (262)
265 cd01568 QPRTase_NadC Quinolina 21.3 3.3E+02 0.0072 29.4 7.8 59 194-266 196-254 (269)
266 PTZ00413 lipoate synthase; Pro 21.2 1.3E+03 0.028 26.6 12.9 125 613-758 180-330 (398)
267 PRK06978 nicotinate-nucleotide 21.1 3.6E+02 0.0077 29.7 8.0 64 190-269 216-279 (294)
268 cd04733 OYE_like_2_FMN Old yel 21.0 1E+03 0.023 26.2 12.0 93 606-698 142-255 (338)
269 COG0320 LipA Lipoate synthase 20.7 1.1E+03 0.025 25.8 11.6 128 195-336 109-261 (306)
270 cd01572 QPRTase Quinolinate ph 20.4 3.7E+02 0.008 29.0 8.0 63 191-269 194-256 (268)
No 1
>KOG2263 consensus Methionine synthase II (cobalamin-independent) [Amino acid transport and metabolism]
Probab=100.00 E-value=4.5e-216 Score=1704.30 Aligned_cols=764 Identities=86% Similarity=1.290 Sum_probs=743.5
Q ss_pred CceecccCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHcCCcccCCCCcccchhhhhhHhhhCCCCC
Q 003819 1 MASHVVGYPRMGPKRELKFALESFWDGKSSADELQNVAADLRASIWNQMADAGIKFIPSNTFSYYDQVLDTTAMLGAVPP 80 (793)
Q Consensus 1 ~~t~~lG~PRig~~reLK~A~e~yw~g~is~~eL~~~~~~~~~~~~~~Q~~aGld~ItdGefs~yD~vLD~~~~~g~ip~ 80 (793)
|.+|++||||||++||||+|+|+||.|++|.++|.++++++|.++|+.|+++|+|+||+|+||+||+|||++.|||+||.
T Consensus 2 ~~S~i~G~PRiGp~RELK~A~E~~W~GKts~ddL~~va~~LR~~~WK~~k~aGv~~IPSN~FS~YDQvlD~t~~~~~vP~ 81 (765)
T KOG2263|consen 2 MASHIVGYPRIGPKRELKFALESFWDGKTSADDLQKVAADLRSSIWKLMKAAGVKIIPSNTFSHYDQVLDTTAMLGAVPP 81 (765)
T ss_pred cccccccCCCcCccHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHHHHHhcCCeeecCCchhHHHHHHhHHHHhcCCCc
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCccccchhhhhccCCCCCCccccceecccCceeecceecCCCccccCCchhHHHHHHHHHcCCCCceEeehHHH
Q 003819 81 RYSWNGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHYIVPELGPDVNFSYASHKAVQEYKEAKALGMETVPVLVGPVS 160 (793)
Q Consensus 81 R~~~~~~~~~l~~yFa~arG~~~~~a~~mtKwFdtNYhY~vPe~~~~~~~~l~~~~~~~e~~~a~~~g~~~K~vl~GP~T 160 (793)
||....+.+++|+||+|+||..+++|+|||||||+||||++||+..+++|++.+++.++||+|||++|+.++|||+||+|
T Consensus 82 RYg~~sg~~~lD~yFsM~RG~~~v~A~EM~KWFDsNyHyi~Pe~~~e~~F~~~s~KavdEf~EAK~lGi~T~PVLvGPvs 161 (765)
T KOG2263|consen 82 RYGRTSGEIGLDVYFSMARGNASVPAMEMTKWFDSNYHYIVPELGPEVNFSYASHKAVDEFKEAKALGIDTVPVLVGPVS 161 (765)
T ss_pred ccccccCccchhhhhhhhcCCCCcchHHHhhhhccCceeeccccCCccceeeccchhHHHHHHHHhcCCcccceeecchh
Confidence 99776667789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEeeccccccCCChHHHHHHHHHHHHHHhccCCCcEEE
Q 003819 161 YLLLSKPAKGVEKSFSLLSLIDKIIPVYKEVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLI 240 (793)
Q Consensus 161 ~l~ls~~~~~~~~~~~~~~ll~~L~~~Y~~~l~~L~~aG~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l 240 (793)
||+|+|.+++....+++.+|+++|+|+|.|+|.+|.++|++|||||||+|++|++.+.+++|..+|..+-.....+++++
T Consensus 162 YL~l~K~aKg~~ks~~~lsLl~kiLPvY~Evi~kL~sAGA~~iQiDEPilvmDL~~~~l~a~k~AY~~l~~~~~~~~v~l 241 (765)
T KOG2263|consen 162 YLLLSKAAKGVDKSFELLSLLPKILPVYKEVIAKLKSAGATWIQIDEPILVMDLPGEKLQAFKGAYAELESTLSGLNVLL 241 (765)
T ss_pred hhheeccccCcccccchHHHHHHHhHHHHHHHHHHHhcCCeEEEcCCceEEeeCcHHHHHHHHHHHHHHHhhccccceee
Confidence 99999987665335789999999999999999999999999999999999999999999999999999976544579999
Q ss_pred EeccCCCchhhHHHHhcCCCccEEEEEeccCCCChhhHhhhCCCCCEEEEEEeeCCCCCCCCHHHHHHHHHHHhhhcCCC
Q 003819 241 ETYFADVPAETYKILTSLKGVTGFGFDLIRGTKTLDLIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKD 320 (793)
Q Consensus 241 ~tyfg~~~~~~~~~l~~lp~Vd~l~lD~~~~~~~l~~l~~~~p~~k~l~lGvVdgrn~w~ed~~~i~~~i~~~~~~v~~e 320 (793)
+||||+++.+.++.|.+||+|.++|+|+++++++|+.++..||.+|.|++|||||||||.+|+......|+++...+|.|
T Consensus 242 ~TYF~~v~~~a~~~lk~L~~v~~~~~D~VR~~e~lD~~~a~~~~~k~l~~GvVdGRNIW~nDf~~s~a~l~k~~~~vG~d 321 (765)
T KOG2263|consen 242 ATYFADVPAEAYKTLKSLKGVTAFGFDLVRGPETLDLVKAGFPEGKYLFAGVVDGRNIWANDFAASLATLQKLEGIVGKD 321 (765)
T ss_pred hhhhccCCHHHHHHHhCCcceeeeeeeeeechhhHHHHHhcCCCCceEEEEEeccchhhhhhHHHHHHHHHHHHHhhccc
Confidence 99999995555999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cEEEeCCCCCcccccccccccCCcHHHHhHHHHHHHHHHHHHHHHHHccCCccHHHHHHHHHHHHhhhcCCCCCCHHHHh
Q 003819 321 KVVVSTSCSLLHTAVDLENETKLDQEIKSWLAFAAQKVVEVNALAKALSGQKDEAYFSSNAAAQASRKSSPRVTNEAVQK 400 (793)
Q Consensus 321 ~l~vspsCgL~hvP~~~~~E~~l~~~~~~~lafA~qKl~El~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 400 (793)
++.||+||||+|+|+|+.+|++||+|||+|||||.|||.|+..|+++++++.+++.+++|+.++++|+.|++++|++||+
T Consensus 322 kvvVstS~SlLHt~vdL~nE~kld~EiK~w~aFA~qK~~Ev~~l~Ka~sg~~~~a~~eaNa~~~~sR~~Sp~v~~~aV~~ 401 (765)
T KOG2263|consen 322 KVVVSTSCSLLHTAVDLINETKLDAEIKSWLAFAAQKVVEVNALAKALSGQKVEALFEANAAALASRRSSPRVTNEAVQK 401 (765)
T ss_pred eEEEeechhhhccchhhccccccCHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHhcchHHHhhccCCCcccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999888899999999999999999999999999
Q ss_pred HHhhCcCCCCcCCCChHHHHHHHHhccCCCCccccccccCCCcHHHHHHHHHHHccchhhHHHHHHhhccccceeeeehh
Q 003819 401 PAAALKGSDHRRATNVSARLDAQQKKLNLPNLPTTTIGSFPQTMDLRRVRREFKAKKRVLLLFHILLLNFHHFQIVFHKL 480 (793)
Q Consensus 401 ~~~~~~~~~~~r~~~~~~r~~~q~~~~~~p~~~tt~iGSfPr~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 480 (793)
|+++++++|.+|.+||+.|..+||++||||+||||||||||||.+||..|+.|++|+
T Consensus 402 r~a~v~~~~h~R~t~~~~Rl~~QQk~lnLPl~PTTTIGSFPQTkelR~~R~~f~~~~----------------------- 458 (765)
T KOG2263|consen 402 RVAAVKGSDHRRATPVSARLDAQQKKLNLPLLPTTTIGSFPQTKELRRVRREFKAKK----------------------- 458 (765)
T ss_pred HHHhcCcccccccCchhhhhHHHHhhcCCCccccccccCCcchHHHHHHHHHhhhcc-----------------------
Confidence 999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccCCHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCccchhHHHHHhhccCceeeccceeeecCCccccCcEEEccC
Q 003819 481 VFYFRISEDDYVKTIKEEINNVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPPIIYGDV 560 (793)
Q Consensus 481 ~~~~~i~~~~~~~~~~~~i~~~i~~Q~~~Gldvi~~Ge~~r~d~v~~f~e~l~G~~~~~~g~v~~~~~~~~~~P~i~g~v 560 (793)
||+++|.++|+++|.++|+.||++||||++|||+||||||+||+|+|+||+||.|||||||||||++||||+|||
T Consensus 459 -----IS~edY~k~I~~Ei~kVvkfQEelgiDVLVHGEpERNDMVeyFGEql~GfaFTvNGWVQSYGSRcVkPPiI~GDv 533 (765)
T KOG2263|consen 459 -----ISEEDYVKFIKEEIEKVVKFQEELGIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPPIIYGDV 533 (765)
T ss_pred -----CCHHHHHHHHHHHHHHHHhHHHHhCccEEecCCcccccHHHHHHhhccceEEEecchhHhhcCcccCCCeeeccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcchhHHHHHHhcCCCCceeeechHHHHhhcccccCCCChHHHHHHHHHHHHHHHHHHHHcCCcEEEEcCcccccC
Q 003819 561 SRPKAMTVFWSSMAQSMTKRPMKGMLTGPVTILNWSFVRNDQPRFETCYQIALAIKDEVEDLEKAGITVIQIDEAALREG 640 (793)
Q Consensus 561 ~~~~~~~~~~~~~aq~~t~kpvK~~LtGPvTll~~s~~~~~~~~~e~~~~lA~al~~ev~~L~~aGv~~IQIDEPal~~~ 640 (793)
+||++||+.|+.|||+.|.+|||||||||+|++.|||+|+|.++.+.|.|||.++++||.+|+++|+++||||||+||++
T Consensus 534 sRPk~MtV~~S~~AQs~TsrPmKGMLTgPvTiL~WSF~R~D~~~~~~~~QiALaikDEV~DLEkaGikVIQiDE~ALREG 613 (765)
T KOG2263|consen 534 SRPKAMTVFWSSYAQSMTSRPMKGMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGIKVIQIDEAALREG 613 (765)
T ss_pred cCCCcceeeHHHHHHHHhcCcccccccCceEEEEeccccCCcchhHHHHHHHHHHHHHHHHHHHcCceEEEeChHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCchhHHHHHHcCCCcEEEEecCCCChhhHHHhhhcccCCCe
Q 003819 641 LPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDADVITIENSRSDEKLLSVFREGVKYRAG 720 (793)
Q Consensus 641 l~l~~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~C~g~~~~i~~~l~~l~~D~isiE~~r~~~~~L~~~~~~~~~~~~ 720 (793)
||+++.+++.|++||+++||.+.+++++.||||+||||+||++|+..|.+||+|+++||++++++++|..|.+...|+..
T Consensus 614 LPLR~aE~~~Yl~WAv~aFRi~~sgVqd~TQIHtH~CYSdfndi~~~I~~mDADVitIEnSrsD~kllsvf~~gvkY~~~ 693 (765)
T KOG2263|consen 614 LPLRKAEHSFYLDWAVHAFRITNSGVQDSTQIHTHMCYSDFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAG 693 (765)
T ss_pred CCcchhhHHHHHHHHHHHhhhccccccccchhhhhhhhhhccHHHHHHHhccCcEEEEecCcchHHHHHHHhccCcccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999865678999
Q ss_pred EeeeeecCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEcCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHhhc
Q 003819 721 IGPGVYDIHSPRIPSTEEIADRINKMLAVLESNILWVNPDCGLKTRKYSEVKPALSNMVAAAKLLRTQLASA 792 (793)
Q Consensus 721 i~~GVvD~~s~~ves~eev~~~i~~al~~i~~~~l~vsPdCGL~t~~~~~~~~kL~~mv~aa~~~r~~~~~~ 792 (793)
||+|++|+|||++|+.+|+++||.+.+..+|.+.+||||||||+||.|+|+..+|+|||+||+.+|++++.+
T Consensus 694 IGpG~~DIHSPRiPs~dE~~erI~~~l~~~~~~~lWvNPDCGLKTR~~~E~~~~L~~Mv~AAk~~R~Q~~~~ 765 (765)
T KOG2263|consen 694 IGPGVYDIHSPRIPSTDEIAERINKMLAVLPQNILWVNPDCGLKTRGYTEVKPALKNMVAAAKLIRSQLASA 765 (765)
T ss_pred cCCceecccCCCCCCHHHHHHHHHHHHHhcccccEEECCCcCcccCCCccccHHHHHHHHHHHHHHHHhccC
Confidence 999999999999999999999999999999999999999999999999999999999999999999998753
No 2
>PLN02475 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
Probab=100.00 E-value=4.6e-195 Score=1709.72 Aligned_cols=764 Identities=90% Similarity=1.354 Sum_probs=728.2
Q ss_pred CceecccCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHcCCcccCCCCcccchhhhhhHhhhCCCCC
Q 003819 1 MASHVVGYPRMGPKRELKFALESFWDGKSSADELQNVAADLRASIWNQMADAGIKFIPSNTFSYYDQVLDTTAMLGAVPP 80 (793)
Q Consensus 1 ~~t~~lG~PRig~~reLK~A~e~yw~g~is~~eL~~~~~~~~~~~~~~Q~~aGld~ItdGefs~yD~vLD~~~~~g~ip~ 80 (793)
|+||++||||||++||||+|+|+||+|++|+++|+++++++++++|+.|+++|||+||||||||||||||+++|+|.||+
T Consensus 1 ~~~~~lGyPRig~~ReLKka~e~yw~G~is~eeL~~~~~~~~~~~~~~Q~~aGld~ItdGdfsryD~vLD~~~m~g~ip~ 80 (766)
T PLN02475 1 MASHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVAADLRSSIWKQMSAAGIKYIPSNTFSYYDQVLDTTAMLGAVPP 80 (766)
T ss_pred CCccccCCCCCCCChHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCcccCCcchhHHHHhHHHHhccchh
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCccccchhhhhccCCCCCCccccceecccCceeecceecCCCccccCCchhHHHHHHHHHcCCCCceEeehHHH
Q 003819 81 RYSWNGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHYIVPELGPDVNFSYASHKAVQEYKEAKALGMETVPVLVGPVS 160 (793)
Q Consensus 81 R~~~~~~~~~l~~yFa~arG~~~~~a~~mtKwFdtNYhY~vPe~~~~~~~~l~~~~~~~e~~~a~~~g~~~K~vl~GP~T 160 (793)
||....+..++++||+||||..+++|++|||||||||||+|||+.+++.|+++.+.++++|++|+++|+.+||||+||+|
T Consensus 81 r~~~~~g~~~l~~yfamaRG~~~~~a~emtKwFdtNYHY~VPe~~~~~~f~~~~~~~l~e~~eA~~~g~~~kpVl~GP~T 160 (766)
T PLN02475 81 RYGWTGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHYIVPELGPEVKFSYASHKAVNEYKEAKALGVDTVPVLVGPVS 160 (766)
T ss_pred hhhccCCcchHHHHHHHhcCCcccccccceEEecCCcceECcEECCCCccccCccchHHHHHHHHHcCCCCCcEEECHHH
Confidence 99754333469999999999646778999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEeeccccccCCChHHHHHHHHHHHHHHhccCCCcEEE
Q 003819 161 YLLLSKPAKGVEKSFSLLSLIDKIIPVYKEVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLI 240 (793)
Q Consensus 161 ~l~ls~~~~~~~~~~~~~~ll~~L~~~Y~~~l~~L~~aG~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l 240 (793)
|++||+...+++..+++.+++++|+++|+++|++|.++||+|||||||+|++|++.++++++.++|+.+.++.+.++++|
T Consensus 161 ~l~Lsk~~~~~~~~~~~~~ll~~L~~~y~~~l~~L~~~Gv~~IQiDEP~L~~d~~~~~~~~~~~ay~~l~~~~~~~~i~l 240 (766)
T PLN02475 161 YLLLSKPAKGVDKSFDLLSLLDKILPVYKEVIAELKAAGASWIQFDEPALVMDLESHKLQAFKTAYAELESTLSGLNVLV 240 (766)
T ss_pred HHHHhcccccccCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEeCchhhcCCCHHHHHHHHHHHHHHHhccCCCeEEE
Confidence 99999964323223679999999999999999999999999999999999999988899999999999988755579999
Q ss_pred EeccCCCch-hhHHHHhcCCCccEEEEEeccCCCChhhHhh-hCCCCCEEEEEEeeCCCCCCCCHHHHHHHHHHHhhhcC
Q 003819 241 ETYFADVPA-ETYKILTSLKGVTGFGFDLIRGTKTLDLIKT-EFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVG 318 (793)
Q Consensus 241 ~tyfg~~~~-~~~~~l~~lp~Vd~l~lD~~~~~~~l~~l~~-~~p~~k~l~lGvVdgrn~w~ed~~~i~~~i~~~~~~v~ 318 (793)
|||||++ + ++++.+.++|+||||||||++++++|+.+.. .+|++|.|++|||||||+|++|+++++++|+++.+.+|
T Consensus 241 ~TyFg~~-~~~~~~~l~~lp~Vd~l~lD~v~~~~~L~~l~~~~~p~~k~L~~GVVDgRNiw~~dl~~~~~~i~~~~~~~~ 319 (766)
T PLN02475 241 ETYFADV-PAEAYKTLTSLKGVTAFGFDLVRGTKTLDLIKKAGFPSGKYLFAGVVDGRNIWANDLAASLATLQALEGIVG 319 (766)
T ss_pred EccCCCC-CHHHHHHHHcCCCCCEEEEEecCChhhHHHHHhccCCCCCeEEEEEEeCCCcccCCHHHHHHHHHHHHHhcC
Confidence 9999999 7 5999999999999999999998889999855 47889999999999999999999999999999999888
Q ss_pred CCcEEEeCCCCCcccccccccccCCcHHHHhHHHHHHHHHHHHHHHHHHccCCccHHHHHHHHHHHHhhhcCCCCCCHHH
Q 003819 319 KDKVVVSTSCSLLHTAVDLENETKLDQEIKSWLAFAAQKVVEVNALAKALSGQKDEAYFSSNAAAQASRKSSPRVTNEAV 398 (793)
Q Consensus 319 ~e~l~vspsCgL~hvP~~~~~E~~l~~~~~~~lafA~qKl~El~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 398 (793)
+++|||+|||||+|+|++++.|++||+++|+|||||+|||+||+.|++++++....+.+.+|.+++++|+.|++++|++|
T Consensus 320 ~~~l~v~psCsLlhvP~~~~~e~~l~~~~~~~~afa~~k~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 399 (766)
T PLN02475 320 KDKLVVSTSCSLLHTAVDLVNETKLDKELKSWLAFAAQKVVEVVALAKALAGQKDEAFFSANAAAQASRRSSPRVTNEAV 399 (766)
T ss_pred CCcEEEeCCCCCccCCccccccccCCHHHHhhhhhHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHhcCCccCCHHH
Confidence 89999999999999999999999999999999999999999999999999764225668999999999999999999999
Q ss_pred HhHHhhCcCCCCcCCCChHHHHHHHHhccCCCCccccccccCCCcHHHHHHHHHHHccchhhHHHHHHhhccccceeeee
Q 003819 399 QKPAAALKGSDHRRATNVSARLDAQQKKLNLPNLPTTTIGSFPQTMDLRRVRREFKAKKRVLLLFHILLLNFHHFQIVFH 478 (793)
Q Consensus 399 ~~~~~~~~~~~~~r~~~~~~r~~~q~~~~~~p~~~tt~iGSfPr~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 478 (793)
|+|+++|+++|++|.+||++|+++||++||||+||||||||||||.+|+++|++|++|+
T Consensus 400 ~~~~~~~~~~~~~r~~~~~~r~~~q~~~~~lp~lptT~IGSfPrp~~lr~ar~~~~~G~--------------------- 458 (766)
T PLN02475 400 QKAAAALKGSDHRRATPVSARLDAQQKKLNLPILPTTTIGSFPQTVELRRVRREYKAKK--------------------- 458 (766)
T ss_pred HHHHHhCChhhcccCCcHHHHHHHHHHHhCCCCCCCccccCCCCCHHHHHHHHHHhcCC---------------------
Confidence 99999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccCCHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCccchhHHHHHhhccCceeeccceeeecCCccccCcEEEc
Q 003819 479 KLVFYFRISEDDYVKTIKEEINNVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPPIIYG 558 (793)
Q Consensus 479 ~~~~~~~i~~~~~~~~~~~~i~~~i~~Q~~~Gldvi~~Ge~~r~d~v~~f~e~l~G~~~~~~g~v~~~~~~~~~~P~i~g 558 (793)
|+.++|+++++++|+++|+.|+++|||||||||++|+|||+||+++|+||.++.+||||+||++||+||+|+|
T Consensus 459 -------i~~e~~~~~~~~aI~~~V~~Qe~~GlDvltdGE~~R~dmv~~F~e~L~Gf~~~~~g~v~~~g~~~~r~p~i~G 531 (766)
T PLN02475 459 -------ISEEDYVKAIKEEIAKVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTANGWVQSYGSRCVKPPIIYG 531 (766)
T ss_pred -------CCHHHHHHHHHHHHHHHHHHHHHcCCCeeecCceeccchHHHHHHhCCCeeecCCceEEeeCCcCCCCCeEec
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCcchhHHHHHHhcCCCCceeeechHHHHhhcccccCCCChHHHHHHHHHHHHHHHHHHHHcCCcEEEEcCcccc
Q 003819 559 DVSRPKAMTVFWSSMAQSMTKRPMKGMLTGPVTILNWSFVRNDQPRFETCYQIALAIKDEVEDLEKAGITVIQIDEAALR 638 (793)
Q Consensus 559 ~v~~~~~~~~~~~~~aq~~t~kpvK~~LtGPvTll~~s~~~~~~~~~e~~~~lA~al~~ev~~L~~aGv~~IQIDEPal~ 638 (793)
+|++++||+++|++|+|++|++|+|+|||||+||+.||++++|.++++++.|||.+|++|+++|+++||++||||||+|+
T Consensus 532 ~I~~~~~~~v~~~~~aq~~t~~~vK~~ltGP~Ti~~~s~~r~~~~~~e~~~~iA~alr~Ev~~L~~aG~~~IQIDEPal~ 611 (766)
T PLN02475 532 DVSRPKAMTVFWSSVAQSMTKRPMKGMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGITVIQIDEAALR 611 (766)
T ss_pred cccCCCCCCHHHHHHHHhccCCccceEEecHHHHHhhhhcccCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeCcchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcccHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCchhHHHHHHcCCCcEEEEecCCCChhhHHHhhhcccCC
Q 003819 639 EGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDADVITIENSRSDEKLLSVFREGVKYR 718 (793)
Q Consensus 639 ~~l~l~~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~C~g~~~~i~~~l~~l~~D~isiE~~r~~~~~L~~~~~~~~~~ 718 (793)
+++++++.+|++|++|++++||.+.+++++++|||+|||||||+++++.|.++++|+|++|++|+++++|+.|++..+++
T Consensus 612 e~~~~~~~~~~~~l~~av~af~~~~~~v~~~~~I~~H~C~gnf~~I~~~i~~l~~D~~~~E~~rs~~~~l~~l~~~~~~~ 691 (766)
T PLN02475 612 EGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYG 691 (766)
T ss_pred hcCCcCccCHHHHHHHHHHHHHHHHhcCCCCCEEEEEEecCCcHHHHHHHHhCCCCEEEEEcCCCChhhhHHHHhhcCCC
Confidence 99999888899999999999999999998889999999999999999999999999999999999888899995424678
Q ss_pred CeEeeeeecCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEcCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHhhcC
Q 003819 719 AGIGPGVYDIHSPRIPSTEEIADRINKMLAVLESNILWVNPDCGLKTRKYSEVKPALSNMVAAAKLLRTQLASAK 793 (793)
Q Consensus 719 ~~i~~GVvD~~s~~ves~eev~~~i~~al~~i~~~~l~vsPdCGL~t~~~~~~~~kL~~mv~aa~~~r~~~~~~~ 793 (793)
+.||+||||+|||++|++|+|+++|+++++++|++|+||||||||+||+|+++.+||+|||+||+.+|+++..++
T Consensus 692 ~~IglGViD~~s~~ves~Eei~~rI~~a~~~v~~e~l~vnPDCGl~tr~~~~~~~kL~~mv~aa~~~r~~~~~~~ 766 (766)
T PLN02475 692 AGIGPGVYDIHSPRIPSTEEIADRINKMLAVLESNILWVNPDCGLKTRKYPEVKPALKNMVAAAKLLRAQLASAK 766 (766)
T ss_pred CeEEEEEEcCCCCCCCCHHHHHHHHHHHHHhCCcceEEEcCCCCcccCCHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 899999999999999999999999999999999999999999999999999999999999999999999987653
No 3
>PRK05222 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; Provisional
Probab=100.00 E-value=1.6e-189 Score=1672.50 Aligned_cols=754 Identities=58% Similarity=0.975 Sum_probs=722.2
Q ss_pred CceecccCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHcCCcccCCCCcccchhhhhhHhhhCCCCC
Q 003819 1 MASHVVGYPRMGPKRELKFALESFWDGKSSADELQNVAADLRASIWNQMADAGIKFIPSNTFSYYDQVLDTTAMLGAVPP 80 (793)
Q Consensus 1 ~~t~~lG~PRig~~reLK~A~e~yw~g~is~~eL~~~~~~~~~~~~~~Q~~aGld~ItdGefs~yD~vLD~~~~~g~ip~ 80 (793)
|+||++||||||++||||+|+|+||+|+||+++|+++++++|+++|+.|+++|||+|||||||||||||||++|||+||+
T Consensus 2 ~~~~~lGyPRiG~~reLK~A~e~yw~g~is~~eL~~~~~~~~~~~~~~Q~~~Gld~it~Gdfs~yd~vLD~~~~lg~ip~ 81 (758)
T PRK05222 2 IKTHILGFPRIGPRRELKKALESYWAGKISEEELLATARELRARHWQRQKEAGLDLIPVGDFSYYDHVLDTAVLLGAIPE 81 (758)
T ss_pred CccccCCCCCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEeccCCcccHHHHHHHHHHhCCCch
Confidence 45999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCccccchhhhhccCCCCCCccccceecccCceeecceecCCCccccCCchhHHHHHHHHHcCCCCceEeehHHH
Q 003819 81 RYSWNGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHYIVPELGPDVNFSYASHKAVQEYKEAKALGMETVPVLVGPVS 160 (793)
Q Consensus 81 R~~~~~~~~~l~~yFa~arG~~~~~a~~mtKwFdtNYhY~vPe~~~~~~~~l~~~~~~~e~~~a~~~g~~~K~vl~GP~T 160 (793)
||....+..++++||+|+||..+.++++|||||||||||+|||++++++|++..++++++|++|+++|+++|||||||+|
T Consensus 82 rf~~~~~~~~~~~yF~~arg~~~~~~~emtKwF~tNYhY~VPei~g~~~~~~~~~~~l~e~~~ak~~g~~~K~vl~GP~T 161 (758)
T PRK05222 82 RFGNLGGSVDLDTYFAMARGGKDVAALEMTKWFNTNYHYIVPEFDPDTQFKLTSNKLLDEFEEAKALGINTKPVLLGPVT 161 (758)
T ss_pred hhccccCCCccccceecccCCCCcccccceEEecCCCceeCcEEcCCcccccCCCcHHHHHHHHHhCCCCceEEEccHHH
Confidence 99754334578999999999766668999999999999999999999889888899999999999999999999999999
Q ss_pred HhhhccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEeeccccccCCChHHHHHHHHHHHHHHhccCCCcEEE
Q 003819 161 YLLLSKPAKGVEKSFSLLSLIDKIIPVYKEVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLI 240 (793)
Q Consensus 161 ~l~ls~~~~~~~~~~~~~~ll~~L~~~Y~~~l~~L~~aG~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l 240 (793)
|++|++.. . .++++.+++++|+++|+++|++|+++||+|||||||+|+++++.++.+++.++|+.+.+..++++++|
T Consensus 162 ~l~ls~~~-~--~~~~~~ell~dl~~~y~~~l~~L~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~y~~l~~~~~~~~i~l 238 (758)
T PRK05222 162 FLWLSKSK-G--EGFDRLDLLDDLLPVYAELLAELAAAGAEWVQIDEPALVLDLPQEWLEAFKRAYEALAAAKPRPKLLL 238 (758)
T ss_pred HHHHhccc-c--cCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEeeCchhhcCCCHHHHHHHHHHHHHHhcCCCCCCEEE
Confidence 99999841 1 23689999999999999999999999999999999999999988899999999999988544579999
Q ss_pred EeccCCCchhhHHHHhcCCCccEEEEEeccCCCChhhHhhhCCCCCEEEEEEeeCCCCCCCCHHHHHHHHHHHhhhcCCC
Q 003819 241 ETYFADVPAETYKILTSLKGVTGFGFDLIRGTKTLDLIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKD 320 (793)
Q Consensus 241 ~tyfg~~~~~~~~~l~~lp~Vd~l~lD~~~~~~~l~~l~~~~p~~k~l~lGvVdgrn~w~ed~~~i~~~i~~~~~~v~~e 320 (793)
+||||++ +++++.|.++| ||+|||||++++.+|+++...+|.+|.|++|||||||+|+||+++++++|+++.+++ +
T Consensus 239 ~tyfg~~-~~~~~~l~~l~-Vd~l~LD~~~~~~~l~~l~~~~p~~k~l~lGVId~rn~~~ed~e~v~~ri~~a~~~v--e 314 (758)
T PRK05222 239 ATYFGSL-NDALDLLASLP-VDGLHLDLVRGPEQLAALLKYFPADKVLSAGVIDGRNIWRADLEAALALLEPLAAKV--D 314 (758)
T ss_pred Eeeccch-hhHHHHHHcCC-CCEEEEEeeCCccchHHHHhhcCCCCEEEEEEEcCCCCCcCCHHHHHHHHHHHHHhh--c
Confidence 9999999 88899999999 999999999977789999755788999999999999999999999999999999988 8
Q ss_pred cEEEeCCCCCcccccccccccCCcHHHHhHHHHHHHHHHHHHHHHHHccCC--ccHHHHHHHHHHHHhhhcCCCCCCHHH
Q 003819 321 KVVVSTSCSLLHTAVDLENETKLDQEIKSWLAFAAQKVVEVNALAKALSGQ--KDEAYFSSNAAAQASRKSSPRVTNEAV 398 (793)
Q Consensus 321 ~l~vspsCgL~hvP~~~~~E~~l~~~~~~~lafA~qKl~El~~l~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v 398 (793)
+|||||||||+|+|+++..|++||+++|+|||||+|||+||++|+++++++ +..+.+..|.++++.|+.|++++|++|
T Consensus 315 ~L~lspsCgL~~vP~~~~~E~~l~~~~~~~~afa~~k~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 394 (758)
T PRK05222 315 RLWVAPSCSLLHVPVDLDAETKLDPELKSWLAFAKQKLEELALLARALNGGRGAVAEALAANRAAIAARRTSPRVHNPAV 394 (758)
T ss_pred cEEEeCCCCCcCCCccccccccCCHHHHhhhhhHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhCCccCCHHH
Confidence 999999999999999999999999999999999999999999999999762 345578999999999999999999999
Q ss_pred HhHHhhCcCCCCcCCCChHHHHHHHHhccCCCCccccccccCCCcHHHHHHHHHHHccchhhHHHHHHhhccccceeeee
Q 003819 399 QKPAAALKGSDHRRATNVSARLDAQQKKLNLPNLPTTTIGSFPQTMDLRRVRREFKAKKRVLLLFHILLLNFHHFQIVFH 478 (793)
Q Consensus 399 ~~~~~~~~~~~~~r~~~~~~r~~~q~~~~~~p~~~tt~iGSfPr~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 478 (793)
|+|+++|+++|++|++||++|+++|+++||||+||||||||||||.+|+++|++|++|+
T Consensus 395 ~~~~~~~~~~~~~r~~~~~~r~~~q~~~~~~p~~~tt~IGSfPrp~~l~~ar~~~~~g~--------------------- 453 (758)
T PRK05222 395 RARLAALTEADFQRQSPYAERAAAQRARLNLPLLPTTTIGSFPQTTEIRKARAAFKKGE--------------------- 453 (758)
T ss_pred HHHHHhCCHhhcccCCcHHHHHHHHHHHhCCCCCcccccCCCCCCHHHHHHHHHHhcCC---------------------
Confidence 99999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccCCHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCccchhHHHHHhhccCceeeccceeeecCCccccCcEEEc
Q 003819 479 KLVFYFRISEDDYVKTIKEEINNVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPPIIYG 558 (793)
Q Consensus 479 ~~~~~~~i~~~~~~~~~~~~i~~~i~~Q~~~Gldvi~~Ge~~r~d~v~~f~e~l~G~~~~~~g~v~~~~~~~~~~P~i~g 558 (793)
||.++|++.++++|+++|+.|+++||||||||||+|+||++||+++|+||.++.+||||+||++||+||+|+|
T Consensus 454 -------i~~~~~~~~~~~~i~~~V~~Qe~~GlDvltdGE~~R~d~v~~F~~~l~Gf~~~~~g~v~~~g~~~~r~p~i~G 526 (758)
T PRK05222 454 -------LSEEEYEAFIREEIARAIRLQEELGLDVLVHGEFERNDMVEYFGEQLDGFAFTQNGWVQSYGSRCVKPPIIYG 526 (758)
T ss_pred -------CCHHHHHHHHHHHHHHHHHHHHHcCCCEeecCceeeeehHHHHHHhCCCeeecCCceeeeeCCcCCCCCeeeC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCcchhHHHHHHhcCCCCceeeechHHHHhhcccccCCCChHHHHHHHHHHHHHHHHHHHHcCCcEEEEcCcccc
Q 003819 559 DVSRPKAMTVFWSSMAQSMTKRPMKGMLTGPVTILNWSFVRNDQPRFETCYQIALAIKDEVEDLEKAGITVIQIDEAALR 638 (793)
Q Consensus 559 ~v~~~~~~~~~~~~~aq~~t~kpvK~~LtGPvTll~~s~~~~~~~~~e~~~~lA~al~~ev~~L~~aGv~~IQIDEPal~ 638 (793)
+|++++||+++|++|||++|++|||+|||||+|+++||++++|.++++++.|||.+|++|+++|+++||++||||||+|+
T Consensus 527 ~i~~~~p~~v~~~~~aq~~t~~~vK~~ltGP~T~~~~s~~r~~~~~~e~~~dlA~al~~Ev~~L~~aG~~~IQiDEPal~ 606 (758)
T PRK05222 527 DVSRPEPMTVEWIKYAQSLTDKPVKGMLTGPVTILNWSFVRDDQPREETARQIALAIRDEVLDLEAAGIKIIQIDEPALR 606 (758)
T ss_pred CCcCCCCCchHHHHHHHhccCCCCcEEEecHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEeeCchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcccHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCchhHHHHHHcCCCcEEEEecCCCChhhHHHhhhcccCC
Q 003819 639 EGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDADVITIENSRSDEKLLSVFREGVKYR 718 (793)
Q Consensus 639 ~~l~l~~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~C~g~~~~i~~~l~~l~~D~isiE~~r~~~~~L~~~~~~~~~~ 718 (793)
+++++++.+|++|++|++++||.++++++++++||+|||||||.++++.|.++++|+|++|++|+++++|+.|++ .+++
T Consensus 607 e~~~~~~~~~~~~l~~~v~a~n~a~~~~~~~~~i~tH~C~g~~~~i~~~i~~l~vD~~~lE~~rs~~e~L~~~~~-~~~~ 685 (758)
T PRK05222 607 EGLPLRRSDWDAYLDWAVEAFRLATSGVKDETQIHTHMCYSEFNDIIDAIAALDADVISIETSRSDMELLDAFED-FGYP 685 (758)
T ss_pred hcCcccccCHHHHHHHHHHHHHHHHcCCCCCCEEEEEEeccChHHHHHHHHhCCCCEEEEEecCCCchhHHHhhc-cCCC
Confidence 999998889999999999999999999998899999999999999999999999999999999998999999988 6778
Q ss_pred CeEeeeeecCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEcCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHh
Q 003819 719 AGIGPGVYDIHSPRIPSTEEIADRINKMLAVLESNILWVNPDCGLKTRKYSEVKPALSNMVAAAKLLRTQLA 790 (793)
Q Consensus 719 ~~i~~GVvD~~s~~ves~eev~~~i~~al~~i~~~~l~vsPdCGL~t~~~~~~~~kL~~mv~aa~~~r~~~~ 790 (793)
+.||+||||+|||++|++|+|+++|+++++++|++++||||||||++++|+++++||+|||+||+.+|+++.
T Consensus 686 ~~iglGVvd~~s~~ves~eei~~rI~~a~~~v~~e~l~v~PdCGl~t~~~~~~~~kL~~mv~aa~~~r~~~~ 757 (758)
T PRK05222 686 NEIGPGVYDIHSPRVPSVEEIEELLRKALEVIPAERLWVNPDCGLKTRGWEETIAALKNMVAAAKELRAELA 757 (758)
T ss_pred CeEEEEEEcCCCCCCCCHHHHHHHHHHHHHhCChheEEEeCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 899999999999999999999999999999999999999999999999999999999999999999999875
No 4
>TIGR01371 met_syn_B12ind 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase. This model describes the cobalamin-independent methionine synthase. A family of uncharacterized archaeal proteins is homologous to the C-terminal region of this family. That family is excluded from this model but, along with this family, belongs to pfam model pfam01717.
Probab=100.00 E-value=7.7e-186 Score=1639.45 Aligned_cols=748 Identities=62% Similarity=1.016 Sum_probs=712.3
Q ss_pred ccCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHcCCcccCCCCcccchhhhhhHhhhCCCCCcccCC
Q 003819 6 VGYPRMGPKRELKFALESFWDGKSSADELQNVAADLRASIWNQMADAGIKFIPSNTFSYYDQVLDTTAMLGAVPPRYSWN 85 (793)
Q Consensus 6 lG~PRig~~reLK~A~e~yw~g~is~~eL~~~~~~~~~~~~~~Q~~aGld~ItdGefs~yD~vLD~~~~~g~ip~R~~~~ 85 (793)
+||||||++||||+|+|+||+|++|+++|+++++++++++|+.|+++|||+||||||||||||||+++|+|.||+||+..
T Consensus 1 ~g~PRig~~reLK~a~e~yw~gki~~~~L~~~~~~~~~~~~~~Q~~aGld~ItdGdfs~yD~vLd~~~~~g~ip~r~~~~ 80 (750)
T TIGR01371 1 LGFPRIGPKRELKKALESYWAGKITKEELLKVAKDLRKKNWKLQKEAGVDFIPSNDFSLYDHVLDTAVMLGAIPERFGNY 80 (750)
T ss_pred CCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCcCcCCcchHHHHHHHHHHhccchHhhhcc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999743
Q ss_pred CCccccchhhhhccCCCCCCccccceecccCceeecceecCCCccccCCchhHHHHHHHHHcCCCCceEeehHHHHhhhc
Q 003819 86 GGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHYIVPELGPDVNFSYASHKAVQEYKEAKALGMETVPVLVGPVSYLLLS 165 (793)
Q Consensus 86 ~~~~~l~~yFa~arG~~~~~a~~mtKwFdtNYhY~vPe~~~~~~~~l~~~~~~~e~~~a~~~g~~~K~vl~GP~T~l~ls 165 (793)
.+..+++.||+||||..++++++|||||||||||+|||++++++|++..+.++++|++|+++|+++||||+||+||++||
T Consensus 81 ~~~~~~~~yFa~arG~~~~~~~emtKwFdtNYhY~VPe~~~~~~~~l~~~~~~~e~~~A~~~g~~~Kpvl~GP~T~l~ls 160 (750)
T TIGR01371 81 GGDLDLDTYFAMARGNKDVPALEMTKWFNTNYHYIVPELSPTTEFKLTSNKPLEEYLEAKELGIETKPVLLGPITFLKLS 160 (750)
T ss_pred ccccchhhhHHHhhCCCCcccceeEEEECCCCeeECCEECCCcceecCcchHHHHHHHHHhcCCCCeEEEECHHHHHHHh
Confidence 22247899999999975667899999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEeeccccccCCChHHHHHHHHHHHHHHhccCCCcEEEEeccC
Q 003819 166 KPAKGVEKSFSLLSLIDKIIPVYKEVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFA 245 (793)
Q Consensus 166 ~~~~~~~~~~~~~~ll~~L~~~Y~~~l~~L~~aG~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg 245 (793)
+. .++ |+++.+++++|+++|++++++|.++||+|||||||+|++|++.++++++.++|+.+.++.+.++++||||||
T Consensus 161 k~-~~~--y~~~~~ll~~L~~~y~~~l~~L~~~G~~~IQiDEP~L~~d~~~~~~~~~~~ay~~l~~~~~~~ki~l~tyFg 237 (750)
T TIGR01371 161 KA-VEE--PFEPLSLLEKLLPVYKEVLKKLAEAGATWVQIDEPALVTDLSKEDLAAFKEAYTELSEALSGLKLLLQTYFD 237 (750)
T ss_pred Cc-cCC--CCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEeeCchhcCCCCHHHHHHHHHHHHHHHhccCCceEEEECCCC
Confidence 84 322 478999999999999999999999999999999999999998889999999999998876568999999999
Q ss_pred CCchhhHHHHhcCCCccEEEEEeccCCCChhhHhhhCCCCCEEEEEEeeCCCCCCCCHHHHHHHHHHHhhhcCCCcEEEe
Q 003819 246 DVPAETYKILTSLKGVTGFGFDLIRGTKTLDLIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVS 325 (793)
Q Consensus 246 ~~~~~~~~~l~~lp~Vd~l~lD~~~~~~~l~~l~~~~p~~k~l~lGvVdgrn~w~ed~~~i~~~i~~~~~~v~~e~l~vs 325 (793)
++ +++++.|.++| ||||||||++++++++.+...+|++|.|++|||||||+|+||+++++++|+++.+.. ++|||+
T Consensus 238 ~~-~~~~~~l~~lp-vd~l~lD~v~~~~~L~~~~~~~~~~k~L~~GVIDgrniw~~d~~~~~~~l~~~~~~~--~~l~v~ 313 (750)
T TIGR01371 238 SV-GDALEALVSLP-VKGIGLDFVHGKGTLELVKAGFPEDKVLSAGVIDGRNIWRNDLEASLSLLKKLLAHV--GKLVVS 313 (750)
T ss_pred ch-HHHHHHHHcCC-CCEEEEEeccCcccHHHHHhcCCCCCeEEEEEEeccccccCCHHHHHHHHHHHHhhC--CCEEEe
Confidence 99 89999999999 999999999988899988645888999999999999999999999999999999854 569999
Q ss_pred CCCCCcccccccccccCCcHHHHhHHHHHHHHHHHHHHHHHHccCC--ccHHHHHHHHHHHHhhhcCCCCCCHHHHhHHh
Q 003819 326 TSCSLLHTAVDLENETKLDQEIKSWLAFAAQKVVEVNALAKALSGQ--KDEAYFSSNAAAQASRKSSPRVTNEAVQKPAA 403 (793)
Q Consensus 326 psCgL~hvP~~~~~E~~l~~~~~~~lafA~qKl~El~~l~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 403 (793)
|||||+|||+|++.|++||+++|+|||||+|||+||+.|+++++++ +..+.+.+|.+++++|+.|++++|++||+|++
T Consensus 314 psCsLlhvP~~~~~e~~l~~~~~~~~~fa~~k~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 393 (750)
T TIGR01371 314 TSCSLLHVPVDLELETKLDPELKSWLAFAKEKLEELKALKRALNGNDDAVAFALEANAAAIAARKSSPRVNDAQVKARLA 393 (750)
T ss_pred CCCCcccCCccCcccccCCHHHHhhhhhHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHhcCCccCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999763 33556899999999999999999999999999
Q ss_pred hCcCCCCcCCCChHHHHHHHHhccCCCCccccccccCCCcHHHHHHHHHHHccchhhHHHHHHhhccccceeeeehhhhc
Q 003819 404 ALKGSDHRRATNVSARLDAQQKKLNLPNLPTTTIGSFPQTMDLRRVRREFKAKKRVLLLFHILLLNFHHFQIVFHKLVFY 483 (793)
Q Consensus 404 ~~~~~~~~r~~~~~~r~~~q~~~~~~p~~~tt~iGSfPr~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (793)
+|+++|++|.+||++|+++||++|+||+||||||||||||.+||++|++||+|+
T Consensus 394 ~~~~~~~~r~~~~~~r~~~q~~~~~~p~~~tt~vGSfPr~~~lk~are~~~~G~-------------------------- 447 (750)
T TIGR01371 394 NLKEDDFRRRSPFKERLPLQQKRLNLPLLPTTTIGSFPQTPEVRKARAAYRKGE-------------------------- 447 (750)
T ss_pred hCCHhhcccCCcHHHHHHHHHHHhCCCCCcCcccCCCCCCHHHHHHHHHHhcCC--------------------------
Confidence 999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCccchhHHHHHhhccCceeeccceeeecCCccccCcEEEccCCCC
Q 003819 484 FRISEDDYVKTIKEEINNVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPPIIYGDVSRP 563 (793)
Q Consensus 484 ~~i~~~~~~~~~~~~i~~~i~~Q~~~Gldvi~~Ge~~r~d~v~~f~e~l~G~~~~~~g~v~~~~~~~~~~P~i~g~v~~~ 563 (793)
||.++|+++++++|+++|+.|+++|||+||||||+|+|||+||+++|+||.++.+||||+||++|++||+|+|+++++
T Consensus 448 --is~eel~~~~~~~i~~~i~~Qe~aGLDvi~~GEf~r~D~v~~F~e~L~G~~~~~~G~v~~~g~~~v~~P~i~g~v~~~ 525 (750)
T TIGR01371 448 --ISEEEYEKFIKEEIKKVIKIQEELGLDVLVHGEFERNDMVEYFGEKLAGFAFTQNGWVQSYGSRCVRPPIIYGDVSRP 525 (750)
T ss_pred --CCHHHHHHHHHHHHHHHHHHHHHcCCCEeccCCeeeecHHHHHhhcCCcEEEecCcceeecCCcCCCCCEEeCCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcchhHHHHHHhcCCCCceeeechHHHHhhcccccCCCChHHHHHHHHHHHHHHHHHHHHcCCcEEEEcCcccccCCCC
Q 003819 564 KAMTVFWSSMAQSMTKRPMKGMLTGPVTILNWSFVRNDQPRFETCYQIALAIKDEVEDLEKAGITVIQIDEAALREGLPL 643 (793)
Q Consensus 564 ~~~~~~~~~~aq~~t~kpvK~~LtGPvTll~~s~~~~~~~~~e~~~~lA~al~~ev~~L~~aGv~~IQIDEPal~~~l~l 643 (793)
+||+++|++|||++|++|+|+|||||+|++.||+.++|.++.+++.|||.+|++|+++|+++||++||||||+|++++++
T Consensus 526 ~~~~v~~~~~aq~lt~~~vK~~LtGPvT~l~~s~~r~d~~~~~~~~~la~a~~~ev~~L~~aG~~~IQIDEPaL~~~l~~ 605 (750)
T TIGR01371 526 KPMTVKWSVYAQSLTSKPVKGMLTGPVTILNWSFVRDDIPRKEIAYQIALAIRDEVLDLEEAGIKIIQIDEPALREGLPL 605 (750)
T ss_pred CCCchHHHHHHHhccCCCCceEEechHHHHhhhhhccCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeCchhhhcCCc
Confidence 99999999999999999999999999999999999888999999999999999999999999999999999999999998
Q ss_pred CcccHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCchhHHHHHHcCCCcEEEEecCCCChhhHHHhhhcccCCCeEee
Q 003819 644 RKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDADVITIENSRSDEKLLSVFREGVKYRAGIGP 723 (793)
Q Consensus 644 ~~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~C~g~~~~i~~~l~~l~~D~isiE~~r~~~~~L~~~~~~~~~~~~i~~ 723 (793)
+..+|.+|++|++++||.++++++++++||+|||||+|+++++.|.++++|+|+||++|++++.|+.|.+.+.+++.||+
T Consensus 606 ~~~~~~~~l~~a~~~~~~~~~~v~~~~~I~~H~C~g~~~~i~~~l~~l~vD~i~lE~~r~~~e~L~~~~~~~~~~~~ig~ 685 (750)
T TIGR01371 606 RKSDWPEYLDWAVEAFRLATSGVKDETQIHTHMCYSEFNEIIESIADLDADVISIEASRSDMELLSAFKNGFGYPNGIGP 685 (750)
T ss_pred cchhHHHHHHHHHHHHHHHHhCCCCCCEEEEEEECCCcHHHHHHHHhCCCCEEEEEecCCChhHHHHhhhhcccCCeEEE
Confidence 87889999999999999999999878999999999999999999999999999999999888889988641256778999
Q ss_pred eeecCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEcCCCCCCCCChhHHHHHHHHHHHHHHHHHHH
Q 003819 724 GVYDIHSPRIPSTEEIADRINKMLAVLESNILWVNPDCGLKTRKYSEVKPALSNMVAAAKLLRTQ 788 (793)
Q Consensus 724 GVvD~~s~~ves~eev~~~i~~al~~i~~~~l~vsPdCGL~t~~~~~~~~kL~~mv~aa~~~r~~ 788 (793)
||||+||+|+|++|++.++|+++++++|++|+||||||||+|++|+++.+||+|||+||+.+|++
T Consensus 686 GVvD~~s~~ve~~eei~~~i~~a~~~i~~erl~vsPdCGL~tr~~~~~~~~L~~mv~aa~~~r~~ 750 (750)
T TIGR01371 686 GVYDIHSPRVPSVEEMADLIEKALQVLPAERLWVNPDCGLKTRNWEEVIASLKNMVEAAKEAREQ 750 (750)
T ss_pred EEEeCCCCCcCCHHHHHHHHHHHHHhcCcceEEEeCCCCCCcCCHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999963
No 5
>cd03312 CIMS_N_terminal_like CIMS - Cobalamine-independent methonine synthase, or MetE, N-terminal domain_like. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers the N-terminal barrel, and a few single-barrel sequences most similar to the N-terminal barrel. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Side chains fro
Probab=100.00 E-value=2.1e-95 Score=803.82 Aligned_cols=360 Identities=56% Similarity=0.934 Sum_probs=337.5
Q ss_pred ceecccCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHcCCcccCCCCcccchhhhhhHhhhCCCCCc
Q 003819 2 ASHVVGYPRMGPKRELKFALESFWDGKSSADELQNVAADLRASIWNQMADAGIKFIPSNTFSYYDQVLDTTAMLGAVPPR 81 (793)
Q Consensus 2 ~t~~lG~PRig~~reLK~A~e~yw~g~is~~eL~~~~~~~~~~~~~~Q~~aGld~ItdGefs~yD~vLD~~~~~g~ip~R 81 (793)
.||++||||||++||||+|+|+||+|+||+++|+++++++++++|+.|+++|||+||||||||||||||++++||+||+|
T Consensus 1 ~~~~~GyPrig~~reLk~a~e~~~~g~i~~~~L~~~~~~~~~~~~~~Q~~~Gl~~it~Gef~~yd~~ld~~~~l~~ip~r 80 (360)
T cd03312 1 KTHILGFPRIGANRELKKALESYWKGKISEEELLATAKELRLRHWKLQKEAGIDLIPVGDFSLYDHVLDTSVLLGAIPER 80 (360)
T ss_pred CCCcCCCCCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEeccCCchhHHHHHHHHHHhCCCchh
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCccccchhhhhccCCCCCCccccceecccCceeecceecCCCccccCCchhHHHHHHHHHcCCCCceEeehHHHH
Q 003819 82 YSWNGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHYIVPELGPDVNFSYASHKAVQEYKEAKALGMETVPVLVGPVSY 161 (793)
Q Consensus 82 ~~~~~~~~~l~~yFa~arG~~~~~a~~mtKwFdtNYhY~vPe~~~~~~~~l~~~~~~~e~~~a~~~g~~~K~vl~GP~T~ 161 (793)
|....+..++++||+|+||..+..+++|||||||||||+|||+.++.++++..++++++|++|+++|.++|||||||+||
T Consensus 81 ~~~~~~~~~~~~yf~~arg~~~~~~~~mtk~f~tNyhY~vPei~~~~~~~~~~~~~l~~~~~a~~~~~~~K~~i~GP~T~ 160 (360)
T cd03312 81 FGALGGLVDLDTYFAMARGNQDVPALEMTKWFDTNYHYIVPELSPDTEFKLASNKLLDEYLEAKALGINTKPVLLGPVTF 160 (360)
T ss_pred hccccCCccHHHHHHHhcCCCCCcchhceeEecCCCceeCcEECCCcccccCcchHHHHHHHHHhcCCCCcEEEECHHHH
Confidence 98643334789999999997666789999999999999999999988888788999999999999999999999999999
Q ss_pred hhhccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEeeccccccCCChHHHHHHHHHHHHHHhccCCCcEEEE
Q 003819 162 LLLSKPAKGVEKSFSLLSLIDKIIPVYKEVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIE 241 (793)
Q Consensus 162 l~ls~~~~~~~~~~~~~~ll~~L~~~Y~~~l~~L~~aG~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~ 241 (793)
++||+.. . .|.++.+++++|+++|++++++|+++||+|||||||+|+++++.++.+.+.++|+.+.++.++.+++|+
T Consensus 161 ~~ls~~~-~--~Y~~~~el~~dla~~y~~el~~L~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~l~ 237 (360)
T cd03312 161 LKLSKAK-G--GGFDRLSLLDKLLPVYKELLKKLAAAGAEWVQIDEPALVLDLPEEWLAAFKRAYEELAKAAPGLKLLLA 237 (360)
T ss_pred HHHhccc-c--cCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEeeCChhhcCCCHHHHHHHHHHHHHHhcCCCCCcEEEE
Confidence 9999853 2 146899999999999999999999999999999999999999888999999999999876545799999
Q ss_pred eccCCCchhhHHHHhcCCCccEEEEEeccCCCChhhHhhhCCCCCEEEEEEeeCCCCCCCCHHHHHHHHHHHhhhcCCCc
Q 003819 242 TYFADVPAETYKILTSLKGVTGFGFDLIRGTKTLDLIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDK 321 (793)
Q Consensus 242 tyfg~~~~~~~~~l~~lp~Vd~l~lD~~~~~~~l~~l~~~~p~~k~l~lGvVdgrn~w~ed~~~i~~~i~~~~~~v~~e~ 321 (793)
||||++ +++++.|.++| ||+|+|||++++++++++...++++|.|++|||||||+|+||+++++++|+++.+++ ++|
T Consensus 238 tyfg~~-~~~~~~l~~l~-Vd~l~le~~~~~~~l~~l~~~~~~~k~l~lGvId~rn~~~ed~e~i~~~i~~a~~~v-~~~ 314 (360)
T cd03312 238 TYFGSL-GENLDLLASLP-VDGLHLDLVRGPENLEAVLKAGFADKVLSAGVVDGRNIWRADLAASLALLETLAAIL-GDR 314 (360)
T ss_pred ecccch-HHHHHHHHcCC-CCEEEEEecCCcccHHHHHhcCCCCCEEEEEEEcCCCCCcCCHHHHHHHHHHHHHHh-cCc
Confidence 999999 89999999999 999999999987899999764667899999999999999999999999999999988 799
Q ss_pred EEEeCCCCCcccccccccccCCcHHHHhHHHHHHHHHHHHHHHHHH
Q 003819 322 VVVSTSCSLLHTAVDLENETKLDQEIKSWLAFAAQKVVEVNALAKA 367 (793)
Q Consensus 322 l~vspsCgL~hvP~~~~~E~~l~~~~~~~lafA~qKl~El~~l~~~ 367 (793)
|||||||||+|+|+++..|++||+++++|||||+|||+||++|+++
T Consensus 315 l~lsp~CgL~~lP~~~~~e~~~~~~~~~~lafa~~k~~e~~~l~~~ 360 (360)
T cd03312 315 LVVSPSCSLLHVPVDLENETKLDPELKSWLAFAKQKLEELALLARA 360 (360)
T ss_pred EEEECCCCCcCCCcccccccCCCHHHHhhcchHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999863
No 6
>PF08267 Meth_synt_1: Cobalamin-independent synthase, N-terminal domain; InterPro: IPR013215 Cobalamin-independent methionine synthase, MetE, catalyses the synthesis of the amino acid methionine by the transfer of a methyl group from methyltetrahydrofolate to homocysteine []. The N-terminal and C-terminal domains of MetE together define a catalytic cleft in the enzyme. The N-terminal domain is thought to bind the substrate, in particular, the negatively charged polyglutamate chain. The N-terminal domain is also thought to stabilise a loop from the C-terminal domain.; GO: 0003871 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity, 0008270 zinc ion binding, 0008652 cellular amino acid biosynthetic process; PDB: 1U22_A 1U1H_A 1U1U_A 1U1J_A 3T0C_A 3L7R_A 2NQ5_A 3PPF_A 3PPH_A 3PPG_A ....
Probab=100.00 E-value=6.7e-90 Score=738.11 Aligned_cols=308 Identities=50% Similarity=0.904 Sum_probs=258.1
Q ss_pred ceecccCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHcCCcccCCCCcccchhhhhhHhhhCCCCCc
Q 003819 2 ASHVVGYPRMGPKRELKFALESFWDGKSSADELQNVAADLRASIWNQMADAGIKFIPSNTFSYYDQVLDTTAMLGAVPPR 81 (793)
Q Consensus 2 ~t~~lG~PRig~~reLK~A~e~yw~g~is~~eL~~~~~~~~~~~~~~Q~~aGld~ItdGefs~yD~vLD~~~~~g~ip~R 81 (793)
+||++||||||++||||+|+|+||+|++|+++|+++++++|.++|+.|+++|||+||+|||||||||||+++|||+||+|
T Consensus 1 kt~~lGyPRiG~~RELK~alE~yW~g~~~~~~L~~~~~~lr~~~w~~q~~agld~ip~gdfs~YD~vLD~~~~~g~iP~r 80 (310)
T PF08267_consen 1 KTHILGYPRIGPNRELKKALEAYWKGKISEEELEQTAKELRKEHWQLQKEAGLDLIPVGDFSLYDHVLDTAVLLGAIPER 80 (310)
T ss_dssp -EE-S---SSTTTTHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHHHHHTT-SBEEES---SS-HHHHHHHHTT---GG
T ss_pred CCccccCCCCCCChHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCchhhHHHHHHHHhccCChh
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCccccchhhhhccCCCCCCccccceecccCceeecceecCCCccccCCchhHHHHHHHHHcCCCCceEeehHHHH
Q 003819 82 YSWNGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHYIVPELGPDVNFSYASHKAVQEYKEAKALGMETVPVLVGPVSY 161 (793)
Q Consensus 82 ~~~~~~~~~l~~yFa~arG~~~~~a~~mtKwFdtNYhY~vPe~~~~~~~~l~~~~~~~e~~~a~~~g~~~K~vl~GP~T~ 161 (793)
|+......+++.||+||||..+++|++|||||||||||+|||++++++|++..++++++|++|+++|+++||||+||+||
T Consensus 81 f~~~~~~~~l~~yFamARG~~~~~a~eMtKWFdTNYHY~VPE~~~~~~f~l~~~~~~~~~~eA~~~G~~~kpvL~GP~Tf 160 (310)
T PF08267_consen 81 FRHADGLDDLDRYFAMARGTDDVPALEMTKWFDTNYHYIVPEITGDTEFKLDSNKLLDEFREAKALGINTKPVLPGPVTF 160 (310)
T ss_dssp GCT-TSSSSHHHHHHHHHSCCCCT--EEEESTTSS-EEEE-EE-TTS----SCCHHHHHHHHHHHTTGGEEEEEE-HHHH
T ss_pred hccCCCCCCHhheeeeccCCCCCchHHHHHHhccCCCeEceEECCCCceeeCcchHHHHHHHHHhhhcCCeeEEEcHHHH
Confidence 99644556899999999999889999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEeeccccccCCChHHHHHHHHHHHHHHhccCCCcEEEE
Q 003819 162 LLLSKPAKGVEKSFSLLSLIDKIIPVYKEVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIE 241 (793)
Q Consensus 162 l~ls~~~~~~~~~~~~~~ll~~L~~~Y~~~l~~L~~aG~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~ 241 (793)
++|||... +.++.+++++|+++|+++|++|.++||+|||||||+|++|+++++.+++..+|+.|. ..++++++|+
T Consensus 161 L~Lsk~~~----~~~~~~ll~~l~~vY~~ll~~L~~~G~~~VQldEP~Lv~d~~~~~~~~~~~aY~~L~-~~~~~~ill~ 235 (310)
T PF08267_consen 161 LLLSKNED----GSDPLDLLDDLLPVYAELLKELAAAGVEWVQLDEPALVLDLPEEWLEAFEEAYEELA-AAPRPKILLA 235 (310)
T ss_dssp HHTSEETT----CCHHHHHHHHHHHHHHHHHHHHHHTT-SEEEEE-GGGGSSGCHHHHHHHHHHHHHHC-CTTTSEEEEE
T ss_pred HHHcCcCC----CCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEecCCeeecCCCHHHHHHHHHHHHHHh-cCCCCcEEEE
Confidence 99999632 236889999999999999999999999999999999999999999999999999996 3346899999
Q ss_pred eccCCCchhhHHHHhcCCCccEEEEEeccCCCChhhHhh-hCCCCCEEEEEEeeCCCCCCCCHHHHHHHHHHHhhh
Q 003819 242 TYFADVPAETYKILTSLKGVTGFGFDLIRGTKTLDLIKT-EFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGT 316 (793)
Q Consensus 242 tyfg~~~~~~~~~l~~lp~Vd~l~lD~~~~~~~l~~l~~-~~p~~k~l~lGvVdgrn~w~ed~~~i~~~i~~~~~~ 316 (793)
||||+. .++++.++++| ||||||||++++.+++.+.. ++|++|.|++|||||||+|++|+++++++|+++.+.
T Consensus 236 TYFg~~-~~~l~~l~~lp-v~~l~lDlv~~~~~l~~~~~~~~p~~k~L~~GvVDGRNiW~~dl~~~~~~l~~l~~~ 309 (310)
T PF08267_consen 236 TYFGDL-GDNLELLLDLP-VDGLHLDLVRGPENLEALLKYGFPADKVLSAGVVDGRNIWRTDLEAALALLEKLREK 309 (310)
T ss_dssp --SS---CCHHHHHTTSS-ESEEEEETTTHCHHHHHHHHHTTTTTSEEEEEEE-SSS-B---HHHHHHHHHHHHHC
T ss_pred CCCCch-hhHHHHHhcCC-CcEEEeeccCCcccHHHHHhcCCCCCCEEEEEEECCccccccCHHHHHHHHHHHHhc
Confidence 999998 89999999999 99999999998889999998 799999999999999999999999999999999764
No 7
>COG0620 MetE Methionine synthase II (cobalamin-independent) [Amino acid transport and metabolism]
Probab=100.00 E-value=1.1e-80 Score=674.37 Aligned_cols=330 Identities=58% Similarity=0.900 Sum_probs=321.2
Q ss_pred CCCCccccccccCCCcHHHHHHHHHHHccchhhHHHHHHhhccccceeeeehhhhcccCCHHHHHHHHHHHHHHHHHHHH
Q 003819 428 NLPNLPTTTIGSFPQTMDLRRVRREFKAKKRVLLLFHILLLNFHHFQIVFHKLVFYFRISEDDYVKTIKEEINNVVKLQE 507 (793)
Q Consensus 428 ~~p~~~tt~iGSfPr~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~i~~Q~ 507 (793)
++|.+|||+|||||||.+|+++|++|.+|+ |+.++|.++++++|+++|+.|+
T Consensus 1 ~~~~~~tt~iGSfPr~~~l~~a~~~~~~G~----------------------------i~~ee~~~~~~~~i~~~i~~q~ 52 (330)
T COG0620 1 KLPLLPTTVIGSFPRPEELRKAREKWKKGE----------------------------ISEEEYEEILREAIRRAIKDQE 52 (330)
T ss_pred CCCcCcccccCCCCCChhHHHHHHHHHhCC----------------------------CCHHHHHHHHHHHHHHHHHHHH
Confidence 478899999999999999999999999999 9999999999999999999999
Q ss_pred HcCCCcccCCCCccchhHHHHHhhccCceeeccceeeecCCccccCcEEEccCCCCCCcchhHHHHHHhcCCCCceeeec
Q 003819 508 ELDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSMAQSMTKRPMKGMLT 587 (793)
Q Consensus 508 ~~Gldvi~~Ge~~r~d~v~~f~e~l~G~~~~~~g~v~~~~~~~~~~P~i~g~v~~~~~~~~~~~~~aq~~t~kpvK~~Lt 587 (793)
++||||+|||||+|+|||+||+++|+||.|+.+||||+||++||++|+|+|+|+++.||+++|+.|+|++|.+|+|+|||
T Consensus 53 ~~Gldv~v~Ge~~r~Dmv~~F~e~l~G~~~~~~~~v~~~~~~~~r~p~i~g~v~~~~~~~v~~~~~a~~~~~~~~K~~lt 132 (330)
T COG0620 53 EAGLDVLVDGEFERNDMVEYFAEKLDGVKFTQNGWVRSYGSRCYRPPIIIGDVSRPEPMTVEEFLYAQSLTEKPVKGMLT 132 (330)
T ss_pred hcCCcEecCCceeecHHHHHHHHHcCCeeeccCCcEEEeccEEeeCceEecccccCCCCcchhhhhhhhccCccceeeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhcccccCCCChHHHHHHHHHHHHHHHHHHHHcCCcEEEEcCcccccCCCCCcccHHHHHHHHHHHHHHHhcCCC
Q 003819 588 GPVTILNWSFVRNDQPRFETCYQIALAIKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQ 667 (793)
Q Consensus 588 GPvTll~~s~~~~~~~~~e~~~~lA~al~~ev~~L~~aGv~~IQIDEPal~~~l~l~~~~~~~~l~~av~a~~~~~~~v~ 667 (793)
||+||+.|||+++|.++++++.|+|.+|++|+++|+++||.+||||||+|++++|++. + ++|++|++++++.++++++
T Consensus 133 GP~ti~~~s~~~~~~~~~el~~~iA~al~~ev~~l~~agi~~iQiDEpal~~~~~~~~-~-~~~l~~~~~~~~~~~~~~~ 210 (330)
T COG0620 133 GPVTILLWSFNRYYISREELAKDIALALRDEVKDLEDAGIKIIQIDEPALREGLPLRR-D-DDYLEWAVEAINLAAAGVG 210 (330)
T ss_pred cHHhhHhhhccccCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEeechhhhhcCCcccc-c-hHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999999999999999999999999887 4 7999999999999999999
Q ss_pred CCCeEEEEeCCCCchhHHHHHHcCCCcEEEEecCCCChhhHHHhhhcccCCCeEeeeeecCCCCCCCCHHHHHHHHHHHH
Q 003819 668 DTTQVHTHMCYSNFNDIIHSIMDMDADVITIENSRSDEKLLSVFREGVKYRAGIGPGVYDIHSPRIPSTEEIADRINKML 747 (793)
Q Consensus 668 ~~~~I~lH~C~g~~~~i~~~l~~l~~D~isiE~~r~~~~~L~~~~~~~~~~~~i~~GVvD~~s~~ves~eev~~~i~~al 747 (793)
++++||+|||||+|+++++.+.++++|++++|.++++++.++.|.. +.+++.||+||||+|+|++|++++|.++|++++
T Consensus 211 ~d~~i~~HiCy~e~~~~~~~i~~ld~dv~~~e~~~s~~~~~~~~~~-~~~~~~Ig~Gv~d~~~~~ve~~eei~~~i~k~~ 289 (330)
T COG0620 211 ADTQIHLHICYSEFNDIPDAIEALDADVIDIETSRSRMELLEVLEE-VKYDKEIGLGVVDIHSPKVESVEEIAARIRKAL 289 (330)
T ss_pred CCcEEEEEEECCcccchhHHHhhcCCcEEeeeccccccchhHHHHh-ccCCCeeecceEecCCCCcCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988888898887 668899999999999999999999999999999
Q ss_pred hhcCCCcEEEcCCCCCCCCChhHHHHHHHHHHHHHHHHHHH
Q 003819 748 AVLESNILWVNPDCGLKTRKYSEVKPALSNMVAAAKLLRTQ 788 (793)
Q Consensus 748 ~~i~~~~l~vsPdCGL~t~~~~~~~~kL~~mv~aa~~~r~~ 788 (793)
+.+|++++||||||||++++++++++||+|||+|++.+|++
T Consensus 290 ~~~~~e~~~vnPDCGl~~~~~~~a~~kL~nmv~a~~~~r~e 330 (330)
T COG0620 290 ERVPPERLYVNPDCGLKTLPREIAEAKLENMVKAAKEIREE 330 (330)
T ss_pred HhCChheEEEcCCCCcccCcHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999874
No 8
>PRK01207 methionine synthase; Provisional
Probab=100.00 E-value=1.6e-76 Score=640.44 Aligned_cols=314 Identities=29% Similarity=0.438 Sum_probs=289.6
Q ss_pred CccccccccCCCcHHHHHHHHHHHccchhhHHHHHHhhccccceeeeehhhhcccCCHHHHHHHHHHHHHHHHHHHHHcC
Q 003819 431 NLPTTTIGSFPQTMDLRRVRREFKAKKRVLLLFHILLLNFHHFQIVFHKLVFYFRISEDDYVKTIKEEINNVVKLQEELD 510 (793)
Q Consensus 431 ~~~tt~iGSfPr~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~i~~Q~~~G 510 (793)
.+|||+|||||||.|+++.. ++++ .+ +++.+.+.++|+.+|+.|+++|
T Consensus 3 ~l~TT~iGS~P~p~~~~~~~---~~~~----------------------------~~-~~~~e~~~~ai~~~v~~Qe~aG 50 (343)
T PRK01207 3 ALITQEIGSFRKPEYLSREF---HKIE----------------------------GT-DKFYELAERATLETLDVFENAG 50 (343)
T ss_pred cccccccCCCCCCHHHHHHH---hccC----------------------------CC-HHHHHHHHHHHHHHHHHHHHcC
Confidence 37999999999999976654 5666 54 4444555559999999999999
Q ss_pred CCcc-cCCCCccchhHHHHHhhccCceeeccceeeecCCccccCcEEEccCCCCCCcchhHHHHHHhcCCCCceeeechH
Q 003819 511 IDVL-VHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSMAQSMTKRPMKGMLTGP 589 (793)
Q Consensus 511 ldvi-~~Ge~~r~d~v~~f~e~l~G~~~~~~g~v~~~~~~~~~~P~i~g~v~~~~~~~~~~~~~aq~~t~kpvK~~LtGP 589 (793)
||+| +|||++|+|||+||+++|+||.+ +||+|+||++||++|+|+|+|++++|++++|++|||++|++|||++||||
T Consensus 51 lDiv~~dGe~~R~dmv~~f~~~l~G~~~--~g~vr~y~~~~~r~Pii~g~i~~~~~~~v~e~~~a~~~t~kpvK~~ltGP 128 (343)
T PRK01207 51 LDNIGIGGEMFRWEMYEHPAERIKGIIF--YGMVRSFDNRYYRKGSIIDRMERRSSFHLDEVEFVADNTKKPIKVPITGP 128 (343)
T ss_pred CCEEeeCCcEeechHHHHHHHhcCCeEe--cCeEEEeccccccCCeEEeeccCCCCCcHHHHHHHHHccCCCcEEEecCH
Confidence 9988 89999999999999999999987 79999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcccccCCCChHHHHHHHHHHHHHHHHHHHHc------CCc-EEEEcCcccccCCCCCcccHHHHHHHHHHHHHHH
Q 003819 590 VTILNWSFVRNDQPRFETCYQIALAIKDEVEDLEKA------GIT-VIQIDEAALREGLPLRKSEQDFYLKWAVHSFRIT 662 (793)
Q Consensus 590 vTll~~s~~~~~~~~~e~~~~lA~al~~ev~~L~~a------Gv~-~IQIDEPal~~~l~l~~~~~~~~l~~av~a~~~~ 662 (793)
+||+.||++++|.++++++.|+|.++++|+++|+++ ||. +||||||+|.. +.++++|++++||.+
T Consensus 129 ~Ti~~~S~~~~Y~~~~el~~~iA~al~~Ev~~L~~a~~~~~~G~~~~IQiDEPal~~--------~~~~l~~av~a~n~~ 200 (343)
T PRK01207 129 YTMMDWSFNDFYRDRYDLAMEFARIINEELKDIKSAWDRKSPGRKLEIQIDEPATTT--------HPDEMDIVVDSINKS 200 (343)
T ss_pred HHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHHhhhcccccCCceEEEEeCCCcCC--------ChHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999 998 79999999963 357999999999999
Q ss_pred hcCCCCCCeEEEEeCCC-CchhHHHHHHcCCCcEEEEecC-------------CCChhhHHHhhhccc----CCCeEeee
Q 003819 663 NCGVQDTTQVHTHMCYS-NFNDIIHSIMDMDADVITIENS-------------RSDEKLLSVFREGVK----YRAGIGPG 724 (793)
Q Consensus 663 ~~~v~~~~~I~lH~C~g-~~~~i~~~l~~l~~D~isiE~~-------------r~~~~~L~~~~~~~~----~~~~i~~G 724 (793)
+++++. +||+||||| +|+++++.|.++++|+++||++ |++++.|+.|.+ +. +++.||+|
T Consensus 201 ~~gv~~--~i~~H~C~g~~~~~i~~~i~~~~~d~~~~E~a~~~~~~~~~~~~~r~~~~~l~~~~~-~~~~l~~~~~Ig~G 277 (343)
T PRK01207 201 VYGIDN--EFSIHVCYSSDYRLLYDRIPELNIDGYNLEYSNRDTLEPGTSDEKRPGFQDLKYFAE-HNESLQRKKFIGLG 277 (343)
T ss_pred HhCCCC--cEEEEEEcCCChHHHHHHHHhCCCCEEEEEeccCcccccccccccccchhHHHHHHh-hccccCCCCeEEee
Confidence 999974 699999999 8999999999999999999987 455788999875 32 56689999
Q ss_pred eecCCCCCCCCHHHHHHHHHHHHhhc-CCCcEEEcCCCCCCCCChhHHHHHHHHHHHHHHHHHHHH
Q 003819 725 VYDIHSPRIPSTEEIADRINKMLAVL-ESNILWVNPDCGLKTRKYSEVKPALSNMVAAAKLLRTQL 789 (793)
Q Consensus 725 VvD~~s~~ves~eev~~~i~~al~~i-~~~~l~vsPdCGL~t~~~~~~~~kL~~mv~aa~~~r~~~ 789 (793)
|||+||+.+|++|+|+++|+++++++ |++++||||||||++++|+++++||+|||+||+.+|++|
T Consensus 278 V~D~~s~~vEs~e~I~~ri~~~l~~v~~~e~l~vnpDCGl~t~~~~~a~~KL~~mv~aa~~~r~el 343 (343)
T PRK01207 278 VTDVHIDYVEPVKLIEDRIRYALKIIKDPELVRLNPDCGLRTRSREIGEQKLRNMVAAKNNILKEL 343 (343)
T ss_pred EEeCCCCCCCCHHHHHHHHHHHHHhcCCcceEEEcCCCCCCcCCHHHHHHHHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999 899999999999999999999999999999999999764
No 9
>PRK09121 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=100.00 E-value=1e-66 Score=571.37 Aligned_cols=317 Identities=27% Similarity=0.438 Sum_probs=296.9
Q ss_pred CccccccccCCCcHHHHHHHHHHHccchhhHHHHHHhhccccceeeeehhhhcccCCHHHHHHHHHHHHHHHHHHHHHcC
Q 003819 431 NLPTTTIGSFPQTMDLRRVRREFKAKKRVLLLFHILLLNFHHFQIVFHKLVFYFRISEDDYVKTIKEEINNVVKLQEELD 510 (793)
Q Consensus 431 ~~~tt~iGSfPr~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~i~~Q~~~G 510 (793)
+||||+|||||||.+|++++++|.+|+ |+.++|++.++++|+++|+.|+++|
T Consensus 2 ~l~tt~VGS~prp~~l~~~~~~~~~g~----------------------------i~~~~l~~~~~~ai~~~V~~Q~~aG 53 (339)
T PRK09121 2 LLPTSTAGSLPKPSWLAEPETLWSPWK----------------------------LQGEELIEGKQDALRLSLQEQEDAG 53 (339)
T ss_pred CCCCceecCCCCCHHHHHHHHHHHcCC----------------------------CCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 589999999999999999999999999 9999999999999999999999999
Q ss_pred CCcccCCCCccchhHHHHHhhccCceeeccceeeecCCcc-ccCcEEEccCCCCCCcchhHHHHHHhcCCCCceeeechH
Q 003819 511 IDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRC-VKPPIIYGDVSRPKAMTVFWSSMAQSMTKRPMKGMLTGP 589 (793)
Q Consensus 511 ldvi~~Ge~~r~d~v~~f~e~l~G~~~~~~g~v~~~~~~~-~~~P~i~g~v~~~~~~~~~~~~~aq~~t~kpvK~~LtGP 589 (793)
||+|||||++|.||+.||.++|+||.++..+|+++| +++ +++|+|+|+|++++++++++++|+++.+++++|++||||
T Consensus 54 ldiitDGE~rR~~~~~~f~~~l~G~~~~~~~~~~~~-~~~~~~~p~v~G~i~~~~~~~~~~~~~~~~~~~~~vK~~ipgP 132 (339)
T PRK09121 54 IDIVSDGEQTRQHFVTTFIEHLSGVDFEKRETVRIR-DRYDASVPTVVGAVSRQKPVFVEDAKFLRQQTTQPIKWALPGP 132 (339)
T ss_pred CCceeCCccccchHHHHHHHhCCCceeecCCcceec-ccccCCCCEEEEecCCCCCCcHHHHHHHHhccCCCceEEeCcH
Confidence 999999999999999999999999998888899999 665 789999999998889999999999999999999999999
Q ss_pred HHHhhcccccCCCChHHHHHHHHHHHHHHHHHHHHcCCcEEEEcCcccccCCCCCcccHHHHHHHHHHHHHHHhcCCCCC
Q 003819 590 VTILNWSFVRNDQPRFETCYQIALAIKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDT 669 (793)
Q Consensus 590 vTll~~s~~~~~~~~~e~~~~lA~al~~ev~~L~~aGv~~IQIDEPal~~~l~l~~~~~~~~l~~av~a~~~~~~~v~~~ 669 (793)
+|++.|++++.|.++++++.+||.+|++|+++|+++||++||||||+|...+ .+..+++++++|.++++++
T Consensus 133 ~tl~~~~~~~~Y~~~~el~~dlA~al~~Ei~~L~~aG~~~IQiDeP~l~~~~-------~~~~~~~v~~~n~~~~g~~-- 203 (339)
T PRK09121 133 MTMIDTLYDDHYKSREKLAWEFAKILNQEAKELEAAGVDIIQFDEPAFNVFF-------DEVNDWGVAALERAIEGLK-- 203 (339)
T ss_pred HHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEecccHHhhhh-------HHHHHHHHHHHHHHHcCCC--
Confidence 9999999998899999999999999999999999999999999999999642 3458899999999999997
Q ss_pred CeEEEEeCCCCc------------------hhHHHHHHcCCCcEEEEec--CCCChhhHHHhhhcccCCCeEeeeeecCC
Q 003819 670 TQVHTHMCYSNF------------------NDIIHSIMDMDADVITIEN--SRSDEKLLSVFREGVKYRAGIGPGVYDIH 729 (793)
Q Consensus 670 ~~I~lH~C~g~~------------------~~i~~~l~~l~~D~isiE~--~r~~~~~L~~~~~~~~~~~~i~~GVvD~~ 729 (793)
..+++|+|||++ +.+++.|.++++|++++|+ .++++++|+.++ ++.|++||||++
T Consensus 204 ~~v~~HvC~G~~~~~~~~~~~~~~~~~g~y~~i~~~l~~~~vd~~~lE~~~~r~~~~~l~~~~-----~~~v~lGvvd~k 278 (339)
T PRK09121 204 CETAVHICYGYGIKANTDWKKTLGSEWRQYEEAFPKLQKSNIDIISLECHNSRVPMDLLELIR-----GKKVMVGAIDVA 278 (339)
T ss_pred CceEEEEeCCCCCCCccccccccccccccHHHHHHHHHhCCCCEEEEEecCCCCCcHHHHhcc-----cCeEEeeeEeCC
Confidence 568999999865 4899999999999999995 444577777764 368999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCCcEEEcCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHh
Q 003819 730 SPRIPSTEEIADRINKMLAVLESNILWVNPDCGLKTRKYSEVKPALSNMVAAAKLLRTQLA 790 (793)
Q Consensus 730 s~~ves~eev~~~i~~al~~i~~~~l~vsPdCGL~t~~~~~~~~kL~~mv~aa~~~r~~~~ 790 (793)
|+.+|++|+|++||+++++++|++++|+||||||++++++.+++||++|++||+++|++|+
T Consensus 279 ~~~lE~~e~I~~rI~~a~~~v~~~~l~lspdCGf~~l~~~~a~~KL~~l~~~a~~~~~~~~ 339 (339)
T PRK09121 279 SDTIETPEEVADTLRKALQFVDADKLYPCTNCGMAPLSRDVARGKLNALSAGAEIVRRELA 339 (339)
T ss_pred CCCCCCHHHHHHHHHHHHHhCCHHHEEECCCCCCCcCCHHHHHHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999999999999999999999999999999999874
No 10
>PRK08575 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=100.00 E-value=1.8e-63 Score=543.95 Aligned_cols=308 Identities=21% Similarity=0.382 Sum_probs=276.2
Q ss_pred eecccCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHcCCcccCCCCcccchhhhhhHhhhCCCCCcc
Q 003819 3 SHVVGYPRMGPKRELKFALESFWDGKSSADELQNVAADLRASIWNQMADAGIKFIPSNTFSYYDQVLDTTAMLGAVPPRY 82 (793)
Q Consensus 3 t~~lG~PRig~~reLK~A~e~yw~g~is~~eL~~~~~~~~~~~~~~Q~~aGld~ItdGefs~yD~vLD~~~~~g~ip~R~ 82 (793)
|++++|||+ ++||+|+|+||+|++|.++|+++.++++.++|+.|+++|||+|||||||| |||+|+
T Consensus 6 t~VGS~Prp---~~Lk~a~e~~~~g~i~~~~l~~~~~~a~~~~v~~Q~~aGlD~itdGe~r~-d~~~~~----------- 70 (326)
T PRK08575 6 ALVGSYPRP---VKLAKVISWYNSGKISKEKLEKAINENTKRFFELAKDVGIDYTTDGLFRW-DDIFDP----------- 70 (326)
T ss_pred eeeCCCCCC---HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEeCCCCcch-HHHHHH-----------
Confidence 555559999 99999999999999999999999999999999999999999999999987 888766
Q ss_pred cCCCCccccchhhhhccCCCCCCccccceecccCceeecceecCCCccccC-CchhHHHHHHHHHc----CC--CCceEe
Q 003819 83 SWNGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHYIVPELGPDVNFSYA-SHKAVQEYKEAKAL----GM--ETVPVL 155 (793)
Q Consensus 83 ~~~~~~~~l~~yFa~arG~~~~~a~~mtKwFdtNYhY~vPe~~~~~~~~l~-~~~~~~e~~~a~~~----g~--~~K~vl 155 (793)
+|.++||. .+++|+|||||||||++|++++ ++++. .++++++|++|+++ |. ++|+||
T Consensus 71 -----------f~~~~~G~---~~~~~~k~f~~ny~y~~P~v~g--~i~~~~~~~~~~~~~~ak~~~~~~~~~~~~K~vl 134 (326)
T PRK08575 71 -----------TISFISGV---EKGGLQRFYDNNFYYRQPVIKE--KINLKEENPYLQWLESAREIKEEVSLESKLKAVL 134 (326)
T ss_pred -----------HHHHcCCc---ccCceeEecCCCceeeCeEEEe--eecCCCCCccHHHHHHHHHhHhccCCCCCccEEE
Confidence 35667884 4678999999999999999998 57666 46799999999987 33 789999
Q ss_pred ehHHHHhhhccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEeecccc-ccCCChHHHHHHHHHHHHHHhccC
Q 003819 156 VGPVSYLLLSKPAKGVEKSFSLLSLIDKIIPVYKEVVAELKAAGATWIQFDEPTL-VLDLDSHKLQAFSDAYSELQSSLS 234 (793)
Q Consensus 156 ~GP~T~l~ls~~~~~~~~~~~~~~ll~~L~~~Y~~~l~~L~~aG~~~VQiDEP~L-~~d~~~~~~~~~~~~y~~l~~~~~ 234 (793)
|||+||+.++++ .. |.+..+++.+++.+|++++++|++ ||+|||||||+| +++++.++.+.+.++|+.+.++.
T Consensus 135 ~GP~T~~~~s~~-~~---Y~~~e~l~~~~a~~l~~e~~~L~~-G~~~IQiDEP~L~~~~~~~~~~~~~~~a~~~~~~~~- 208 (326)
T PRK08575 135 PGPLTYAVLSDN-EY---YKNLIELMEDYASVVNSLIKELSS-VVDAVEIHEPSIFAKGIKRDTLEKLPEVYKTMAKNV- 208 (326)
T ss_pred ecHHHHHHHhcc-cc---CCCHHHHHHHHHHHHHHHHHHHHc-CCCEEEecCcceeCCCCCHHHHHHHHHHHHHHHhcC-
Confidence 999999999985 22 357889999999999999999999 999999999999 89998889999999999998876
Q ss_pred CCcEEEEeccCCCchhhHHHHhcCCCccEEEEEeccCCCChhhHhhhCCCCCEEEEEEeeCCCCCCCCHHHHHHHHHHHh
Q 003819 235 GLNVLIETYFADVPAETYKILTSLKGVTGFGFDLIRGTKTLDLIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLA 314 (793)
Q Consensus 235 ~~~i~l~tyfg~~~~~~~~~l~~lp~Vd~l~lD~~~~~~~l~~l~~~~p~~k~l~lGvVdgrn~w~ed~~~i~~~i~~~~ 314 (793)
++++++|||||.....+++.|.++| ||+||+||+++.++++.+...++ +|.|++|||||||+++|++++++++|+++.
T Consensus 209 ~~~i~l~tyfg~~~~~~~~~l~~~~-vd~l~ld~~~~~~~l~~~~~~~~-~k~l~~GviD~rn~~vE~~eev~~~i~~~~ 286 (326)
T PRK08575 209 NIEKHLMTYFEINNLKRLDILFSLP-VTYFGIDVIENLKKLGRVYTYLK-GRKVYLGILNARNTKMEKISTIRRIVNKVK 286 (326)
T ss_pred CCCEEEECCCCCccccHHHHHhcCC-CcEEEEEecCChhHHHHHHhhCC-CCEEEEEEEeCCCCCCCCHHHHHHHHHHHH
Confidence 4789999999951124899999999 99999999987778888876566 799999999999999999999999999999
Q ss_pred hhcCCCcEEEeCCCCCcccccccccccCCcHHHHhHHHHHHHHHHHHHHHHH
Q 003819 315 GTVGKDKVVVSTSCSLLHTAVDLENETKLDQEIKSWLAFAAQKVVEVNALAK 366 (793)
Q Consensus 315 ~~v~~e~l~vspsCgL~hvP~~~~~E~~l~~~~~~~lafA~qKl~El~~l~~ 366 (793)
+ +|+++|||+|||||..+|++ .|.+||+.|+...+
T Consensus 287 ~-~~~~~l~v~pdcgl~~lp~~----------------~a~~KL~~l~~~~~ 321 (326)
T PRK08575 287 R-KGVSDIIVGNNTLFDFIPEV----------------VAVKKLKLLGKLEK 321 (326)
T ss_pred h-cCCCeEEEeCCCCcccCcHH----------------HHHHHHHHHHHHHh
Confidence 9 89999999999999999997 59999999998843
No 11
>PF01717 Meth_synt_2: Cobalamin-independent synthase, Catalytic domain; InterPro: IPR002629 This is a domain of vitamin-B12 independent methionine synthases or 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferases, 2.1.1.14 from EC from bacteria and plants. Plants are the only higher eukaryotes that have the required enzymes for methionine synthesis []. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to homocysteine []. The aligned region makes up the carboxy region of the approximately 750 amino acid protein except in some hypothetical archaeal proteins present in the family, where this region corresponds to the entire length.; GO: 0003871 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity, 0009086 methionine biosynthetic process; PDB: 1U22_A 1U1H_A 1U1U_A 1U1J_A 3BQ5_A 3BQ6_A 1XDJ_B 1XR2_B 1T7L_B 1XPG_B ....
Probab=100.00 E-value=1.8e-62 Score=537.01 Aligned_cols=322 Identities=37% Similarity=0.566 Sum_probs=279.7
Q ss_pred ccccccccCCCcHHHHHHHHHHHccchhhHHHHHHhhccccceeeeehhhhcccCCHHHHHHHHHHHHHHHHHHHHHcCC
Q 003819 432 LPTTTIGSFPQTMDLRRVRREFKAKKRVLLLFHILLLNFHHFQIVFHKLVFYFRISEDDYVKTIKEEINNVVKLQEELDI 511 (793)
Q Consensus 432 ~~tt~iGSfPr~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~i~~Q~~~Gl 511 (793)
||||+|||||||++|++++++|.+|+ ++.+++++.++++|+++|++|+++||
T Consensus 1 ~~TT~VGS~prp~~l~~a~~~~~~g~----------------------------~~~~~l~~~~~~ai~~~V~~Q~~~Gl 52 (324)
T PF01717_consen 1 FPTTVVGSFPRPEELKEAREAFAKGE----------------------------ISPEELEEIEDEAIADAVKRQEDAGL 52 (324)
T ss_dssp S-BB-SSB---SHHHHHHHHHHHTTS----------------------------S-HHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred CCCcccCCCCCCHHHHHHHHHHhcCC----------------------------CCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 79999999999999999999999999 99999999999999999999999999
Q ss_pred CcccCCCCccchhHHHHHhhccCceeeccceeeecCCccccCcEEEccCCCCCCcchhHHHHHHhcCCCCceeeechHHH
Q 003819 512 DVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSMAQSMTKRPMKGMLTGPVT 591 (793)
Q Consensus 512 dvi~~Ge~~r~d~v~~f~e~l~G~~~~~~g~v~~~~~~~~~~P~i~g~v~~~~~~~~~~~~~aq~~t~kpvK~~LtGPvT 591 (793)
|++|||||+|.||+.||.++|+||..+.++|++.||++++++|+++|++.+.+|+++++..++++.+++|+|+++|||+|
T Consensus 53 dvitDGE~~R~~~~~~f~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~vK~~i~gP~t 132 (324)
T PF01717_consen 53 DVITDGEFRRGDFHSYFAERLDGFGDTLNGDVQSFGERYYRPPIVVGKISRKKPFAVEEFKYAQSLTDKPVKGTITGPST 132 (324)
T ss_dssp SCBE-BTTT-SSTTHHHHTTSEEEEEESSEEEEEETTEEEEEEEEEEEEEESS-SSHHHHHHHHHT-SSSBEEEEE-HHH
T ss_pred CceecceeccCchhhhhhhhccCceeeccccceecccccccceEEecccccCCcchhHHHHHHHhccccccccccCHHHH
Confidence 99999999999999999999999966678999999999999999999999999999999999999999999999999999
Q ss_pred HhhcccccCCCChHHHHHHHHHHHHHHHHHHHHcCCcEEEEcCcccccCCCCCcccHHHHHHHHHH--HHHHHhcCCCCC
Q 003819 592 ILNWSFVRNDQPRFETCYQIALAIKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVH--SFRITNCGVQDT 669 (793)
Q Consensus 592 ll~~s~~~~~~~~~e~~~~lA~al~~ev~~L~~aGv~~IQIDEPal~~~l~l~~~~~~~~l~~av~--a~~~~~~~v~~~ 669 (793)
++.+++.++|.+..+++.++|.++++|+++|.++||++||||||+|++.++....+...++++++. +++.+.++. +
T Consensus 133 l~~~~~~~~y~~~~~~~~dla~a~~~ei~~l~~~G~~~iQiDeP~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~ 210 (324)
T PF01717_consen 133 LADPSANRYYKDREELLEDLAEAYREEIRALYDAGCRYIQIDEPALSEGPPDASFDRDEYLDEAVAAEALNRAVKGE--D 210 (324)
T ss_dssp HHHTSEESSSS-HHHHHHHHHHHHHHHHHHHHHTT-SEEEEEETCHHCTSCSSHHHHHHHHHHHHHHHHHHHTTSTT--T
T ss_pred hhchhccccCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEecchHhhcchhhhcccHHHHHHHHHHHHHHHhccCCC--C
Confidence 999999999999999999999999999999999999999999999999877654445666666644 556665554 5
Q ss_pred CeEEEEeCCCCchhHHHHHHcCCCcEEEEecCCCChhhHHHhhhcccCCCeEeeeeecCCCCCCCCHHHHHHHHHHHHhh
Q 003819 670 TQVHTHMCYSNFNDIIHSIMDMDADVITIENSRSDEKLLSVFREGVKYRAGIGPGVYDIHSPRIPSTEEIADRINKMLAV 749 (793)
Q Consensus 670 ~~I~lH~C~g~~~~i~~~l~~l~~D~isiE~~r~~~~~L~~~~~~~~~~~~i~~GVvD~~s~~ves~eev~~~i~~al~~ 749 (793)
+++++|+|+||+...++.|.++++|++++|++..+...++.|++ .+.++.|++||||++++.+|++|+|+++|++++++
T Consensus 211 ~~v~~H~C~~~~~~~~~~l~~~~vd~~~lE~~~~~~~~l~~l~~-~~~~k~v~lGvv~~~~~~vE~~e~v~~ri~~a~~~ 289 (324)
T PF01717_consen 211 ATVGVHVCRGNYPSILPLLADLNVDAFFLEFADRRAGDLEPLRE-LPSGKKVVLGVVDTKSPEVESPEEVADRIEEALEY 289 (324)
T ss_dssp SEEEEEESSSCHCTTHHHHHCSS-SEEEEEETSSTTGGGHHCHC-TTTTSEEEEEES-TTSSS--THHHHHHHHHHHHTT
T ss_pred CEEEEEecCccchhhHHHHhhcccceEEeecccCCcccHHHHHh-CcCCceEEEEEEcCCCCCcCCHHHHHHHHHHHHhc
Confidence 78999999999999999999999999999977666567888887 67789999999999999999999999999999999
Q ss_pred cCCCcEEEcCCCCCCCCChhHHHHHHHHHHHHHHH
Q 003819 750 LESNILWVNPDCGLKTRKYSEVKPALSNMVAAAKL 784 (793)
Q Consensus 750 i~~~~l~vsPdCGL~t~~~~~~~~kL~~mv~aa~~ 784 (793)
++++|+|+||||||++++++++++||++||+||++
T Consensus 290 ~~~~~l~~sPdCGfa~~~~~~a~~kL~~~v~aa~~ 324 (324)
T PF01717_consen 290 VPLEQLWLSPDCGFASLTREEARAKLRNMVEAARE 324 (324)
T ss_dssp S-GGGEEEEESSTSTTS-HHHHHHHHHHHHHHHHH
T ss_pred CccccEEEcCCCCCCCCCHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999985
No 12
>PRK08575 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=100.00 E-value=3.9e-61 Score=525.50 Aligned_cols=313 Identities=16% Similarity=0.206 Sum_probs=283.5
Q ss_pred CccccccccCCCcHHHHHHHHHHHccchhhHHHHHHhhccccceeeeehhhhcccCCHHHHHHHHHHHHHHHHHHHHHcC
Q 003819 431 NLPTTTIGSFPQTMDLRRVRREFKAKKRVLLLFHILLLNFHHFQIVFHKLVFYFRISEDDYVKTIKEEINNVVKLQEELD 510 (793)
Q Consensus 431 ~~~tt~iGSfPr~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~i~~Q~~~G 510 (793)
.||||+|||||||.||++++++||+|+ ++.++|++.++++++++|+.|+++|
T Consensus 2 ~~~tt~VGS~Prp~~Lk~a~e~~~~g~----------------------------i~~~~l~~~~~~a~~~~v~~Q~~aG 53 (326)
T PRK08575 2 KIKKALVGSYPRPVKLAKVISWYNSGK----------------------------ISKEKLEKAINENTKRFFELAKDVG 53 (326)
T ss_pred CceeeeeCCCCCCHHHHHHHHHHHCCC----------------------------CCHHHHHHHHHHHHHHHHHHHHHcC
Confidence 479999999999999999999999999 9999999999999999999999999
Q ss_pred CCcccCCCCccchhHHHHHhhccCceeeccceeeecCCcc-ccCcEEEccCCCCCC-cchhHHHHHHhcC-----CCCce
Q 003819 511 IDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRC-VKPPIIYGDVSRPKA-MTVFWSSMAQSMT-----KRPMK 583 (793)
Q Consensus 511 ldvi~~Ge~~r~d~v~~f~e~l~G~~~~~~g~v~~~~~~~-~~~P~i~g~v~~~~~-~~~~~~~~aq~~t-----~kpvK 583 (793)
||+||||||+|++|+.+|.+.++|+.+ .++++||++|| |++|+++|++++.++ ..+++++++++++ ++++|
T Consensus 54 lD~itdGe~r~d~~~~~f~~~~~G~~~--~~~~k~f~~ny~y~~P~v~g~i~~~~~~~~~~~~~~ak~~~~~~~~~~~~K 131 (326)
T PRK08575 54 IDYTTDGLFRWDDIFDPTISFISGVEK--GGLQRFYDNNFYYRQPVIKEKINLKEENPYLQWLESAREIKEEVSLESKLK 131 (326)
T ss_pred CCEeCCCCcchHHHHHHHHHHcCCccc--CceeEecCCCceeeCeEEEeeecCCCCCccHHHHHHHHHhHhccCCCCCcc
Confidence 999999999997799999999999854 57999999997 899999999998644 4899999999884 24899
Q ss_pred eeechHHHHhhcccccCCCChHHHHHHHHHHHHHHHHHHHHcCCcEEEEcCccc-ccCCCCCcccHHHHHHHHHHHHHHH
Q 003819 584 GMLTGPVTILNWSFVRNDQPRFETCYQIALAIKDEVEDLEKAGITVIQIDEAAL-REGLPLRKSEQDFYLKWAVHSFRIT 662 (793)
Q Consensus 584 ~~LtGPvTll~~s~~~~~~~~~e~~~~lA~al~~ev~~L~~aGv~~IQIDEPal-~~~l~l~~~~~~~~l~~av~a~~~~ 662 (793)
++||||+|++.|+++..|.+.++++.++|.+|++|+++|.+ ||++||||||+| +.+++ ....++++++++.+
T Consensus 132 ~vl~GP~T~~~~s~~~~Y~~~e~l~~~~a~~l~~e~~~L~~-G~~~IQiDEP~L~~~~~~------~~~~~~~~~a~~~~ 204 (326)
T PRK08575 132 AVLPGPLTYAVLSDNEYYKNLIELMEDYASVVNSLIKELSS-VVDAVEIHEPSIFAKGIK------RDTLEKLPEVYKTM 204 (326)
T ss_pred EEEecHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHHc-CCCEEEecCcceeCCCCC------HHHHHHHHHHHHHH
Confidence 99999999999999887888999999999999999999999 999999999999 86643 35678999999999
Q ss_pred hcCCCCCCeEEEEeCCCCc-hhHHHHHHcCCCcEEEEecCCCChhhHHHhhhcccCCCeEeeeeecCCCCCCCCHHHHHH
Q 003819 663 NCGVQDTTQVHTHMCYSNF-NDIIHSIMDMDADVITIENSRSDEKLLSVFREGVKYRAGIGPGVYDIHSPRIPSTEEIAD 741 (793)
Q Consensus 663 ~~~v~~~~~I~lH~C~g~~-~~i~~~l~~l~~D~isiE~~r~~~~~L~~~~~~~~~~~~i~~GVvD~~s~~ves~eev~~ 741 (793)
.++++ .++++|+|||.- .++++.|.++++|+|++|+++++ +.|..+.+ ...++.|++||||+||+++|++|+|++
T Consensus 205 ~~~~~--~~i~l~tyfg~~~~~~~~~l~~~~vd~l~ld~~~~~-~~l~~~~~-~~~~k~l~~GviD~rn~~vE~~eev~~ 280 (326)
T PRK08575 205 AKNVN--IEKHLMTYFEINNLKRLDILFSLPVTYFGIDVIENL-KKLGRVYT-YLKGRKVYLGILNARNTKMEKISTIRR 280 (326)
T ss_pred HhcCC--CCEEEECCCCCccccHHHHHhcCCCcEEEEEecCCh-hHHHHHHh-hCCCCEEEEEEEeCCCCCCCCHHHHHH
Confidence 99984 689999999941 25899999999999999988765 34677765 222678999999999999999999999
Q ss_pred HHHHHHhhcCCCcEEEcCCCCCCCCChhHHHHHHHHHHHHHHHHH
Q 003819 742 RINKMLAVLESNILWVNPDCGLKTRKYSEVKPALSNMVAAAKLLR 786 (793)
Q Consensus 742 ~i~~al~~i~~~~l~vsPdCGL~t~~~~~~~~kL~~mv~aa~~~r 786 (793)
+|+++++ +|++++||+|||||++++++.+++||++|++| +.++
T Consensus 281 ~i~~~~~-~~~~~l~v~pdcgl~~lp~~~a~~KL~~l~~~-~~~~ 323 (326)
T PRK08575 281 IVNKVKR-KGVSDIIVGNNTLFDFIPEVVAVKKLKLLGKL-EKLE 323 (326)
T ss_pred HHHHHHh-cCCCeEEEeCCCCcccCcHHHHHHHHHHHHHH-Hhhc
Confidence 9999999 99999999999999999999999999999999 6553
No 13
>PRK06233 hypothetical protein; Provisional
Probab=100.00 E-value=4.5e-60 Score=525.22 Aligned_cols=324 Identities=20% Similarity=0.232 Sum_probs=282.0
Q ss_pred CCccccccccCCCcHHHHHHHHHHHccchhhHHHHHHhhccccceeeeehhhhcccCCHHHHHHHHHHHHHHHHHHHHHc
Q 003819 430 PNLPTTTIGSFPQTMDLRRVRREFKAKKRVLLLFHILLLNFHHFQIVFHKLVFYFRISEDDYVKTIKEEINNVVKLQEEL 509 (793)
Q Consensus 430 p~~~tt~iGSfPr~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~i~~Q~~~ 509 (793)
|+|++++|||||||.+|+++|++|.+|+ |+.++|+++++++|+++|+.|+++
T Consensus 7 ~~~~~~~VGS~prP~~L~~a~~~~~~g~----------------------------i~~~~l~~~~~~ai~~~V~~Q~~a 58 (372)
T PRK06233 7 APFRFDIVGSFLRPERLKEAREQFAIGE----------------------------ISQDQLLKIQHAEIKRLVKEQVEL 58 (372)
T ss_pred CCcccceEeeCCCCHHHHHHHHHHhcCC----------------------------CCHHHHHHHHHHHHHHHHHHHHHh
Confidence 7899999999999999999999999999 999999999999999999999999
Q ss_pred CCCcccCCCCccchhHHHHHhhccCceeeccceeeecCCcc----ccCcEEEccCCC--CCCcchhHHHHHHhcC--CCC
Q 003819 510 DIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRC----VKPPIIYGDVSR--PKAMTVFWSSMAQSMT--KRP 581 (793)
Q Consensus 510 Gldvi~~Ge~~r~d~v~~f~e~l~G~~~~~~g~v~~~~~~~----~~~P~i~g~v~~--~~~~~~~~~~~aq~~t--~kp 581 (793)
|||+||||||+|.||+.+|.+.|+||.+. ++.++|+..+ +.+|+|+|+|++ .+|+ +++++|+++.+ +.+
T Consensus 59 GldiitDGE~rR~~~~~~f~~~l~G~~~~--~~~~~~~~~~~~~~~~~~~v~g~i~~~~~~p~-~~~~~~~~~~~~~~~~ 135 (372)
T PRK06233 59 GLKAVTDGEFNRSWWHLDFLWGLNGVGKY--EYEDSYKFHGAKTRTDNAELAGKVAFNPDHPF-FAAFKYLKSIVPEGVL 135 (372)
T ss_pred CCCeeeCCCcCCccHHHHHHhhcCceEee--cCcceeeecCCcCCCCCCEEEEeeccCCCCch-HHHHHHHHhhhcCCCc
Confidence 99999999999999999999999999763 5666665433 567999999997 4666 79999999986 356
Q ss_pred ceeeechHHHHhhccc----ccCCCChHHHHHHHHHHHHHHHHHHHHcCCcEEEEcCcccccCCCCCc---c---cHHHH
Q 003819 582 MKGMLTGPVTILNWSF----VRNDQPRFETCYQIALAIKDEVEDLEKAGITVIQIDEAALREGLPLRK---S---EQDFY 651 (793)
Q Consensus 582 vK~~LtGPvTll~~s~----~~~~~~~~e~~~~lA~al~~ev~~L~~aGv~~IQIDEPal~~~l~l~~---~---~~~~~ 651 (793)
+|+++|||.|++.++. +..|.++++++.+||.+|++|+++|+++||++||||||++...+.... . .+.++
T Consensus 136 ~K~tipgP~~l~~~~~~~~~~~~Y~~~eel~~dlA~a~~~Ei~~L~~aG~~~IQiDeP~~~~~~~~~~~~~~~~~~~~~~ 215 (372)
T PRK06233 136 PKQTIPSPSLLFRDNRSDNWPKFYDSWDDYLDDLAQAYHDTIQHFYDLGARYIQLDDTTWAYLISKLNDTENDPKEHQKY 215 (372)
T ss_pred eEEEecCcHHhccCcccccccccCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEcCCCHHhhhccccccccchhhhhhH
Confidence 8999999999986643 346889999999999999999999999999999999999876543211 1 12334
Q ss_pred HHH---HHHHHHHHhcCCCCCCeEEEEeCCCCch----------hHHHHHHcCCCcEEEEecC--CC-ChhhHHHhhhcc
Q 003819 652 LKW---AVHSFRITNCGVQDTTQVHTHMCYSNFN----------DIIHSIMDMDADVITIENS--RS-DEKLLSVFREGV 715 (793)
Q Consensus 652 l~~---av~a~~~~~~~v~~~~~I~lH~C~g~~~----------~i~~~l~~l~~D~isiE~~--r~-~~~~L~~~~~~~ 715 (793)
.++ +++++|.++++++.+++|++|+|||||. .+++.|.++++|++++|.. |+ +++.|+.+.. .
T Consensus 216 ~~~~~~~~~~~N~~~~~~p~d~~i~~H~C~Gn~~~~~~~~g~y~~i~~~l~~~~vd~~~lE~~~~r~~~~~~L~~~~~-~ 294 (372)
T PRK06233 216 VKLAEDAVYVINKALADLPEDLTVTTHICRGNFKSTYLFSGGYEPVAKYLGQLNYDGFFLEYDNDRSGSFEPLKQIWN-N 294 (372)
T ss_pred HHHHHHHHHHHHHHHhCCCcCCEEEEEeeCCCCCCcccccCcHHHHHHHHHhCCCCEEEEecCCCccCccchHHHhhc-c
Confidence 444 5669999999999889999999999876 9999999999999999964 32 4555665533 2
Q ss_pred cCCCeEeeeeecCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEcCCCCCC------CCChhHHHHHHHHHHHHHHHH
Q 003819 716 KYRAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLESNILWVNPDCGLK------TRKYSEVKPALSNMVAAAKLL 785 (793)
Q Consensus 716 ~~~~~i~~GVvD~~s~~ves~eev~~~i~~al~~i~~~~l~vsPdCGL~------t~~~~~~~~kL~~mv~aa~~~ 785 (793)
+.++.|++||||+||+.+|++|+|++||+++++++|++|||+||||||+ .++++.+|+||++|+++|+.+
T Consensus 295 ~~~k~v~lGvid~~~~~vE~~e~I~~rI~~a~~~v~~e~l~lspdCGf~s~~~g~~l~~~~~~~KL~~l~~~a~~~ 370 (372)
T PRK06233 295 RDNVRIVLGLITSKFPELEDEDEIIARIDEATEYVPLSNLALSTQCGFASTEEGNILTEADQWAKLALVKKIADKV 370 (372)
T ss_pred CCCCEEEeeeecCCCCCCCCHHHHHHHHHHHHHhCCHHHEEecCCCCCccccccCCCCHHHHHHHHHHHHHHHHHh
Confidence 2357899999999999999999999999999999999999999999999 789999999999999999875
No 14
>PRK06520 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=100.00 E-value=1.3e-59 Score=520.42 Aligned_cols=325 Identities=16% Similarity=0.204 Sum_probs=283.7
Q ss_pred CCCccccccccCCCcHHHHHHHHHHHccchhhHHHHHHhhccccceeeeehhhhcccCCHHHHHHHHHHHHHHHHHHHHH
Q 003819 429 LPNLPTTTIGSFPQTMDLRRVRREFKAKKRVLLLFHILLLNFHHFQIVFHKLVFYFRISEDDYVKTIKEEINNVVKLQEE 508 (793)
Q Consensus 429 ~p~~~tt~iGSfPr~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~i~~Q~~ 508 (793)
.|+|+||+|||||||.+|+++|++|.+|+ |+.++|++.++++|+++|+.|++
T Consensus 5 ~~~~~tt~VGS~prP~~L~~a~~~~~~g~----------------------------i~~~~l~~~~~~ai~~~V~~Q~~ 56 (368)
T PRK06520 5 KAPFRADVVGSFLRPAAIKQARQQFAAGE----------------------------IDAAALRKIEDMEIRKVVEKQRA 56 (368)
T ss_pred CCCCCcceeccCCCCHHHHHHHHHHHcCC----------------------------CCHHHHHHHHHHHHHHHHHHHHH
Confidence 37899999999999999999999999999 99999999999999999999999
Q ss_pred cCCCcccCCCCccchhHHHHHhhccCceeec-cceeeecCCc-cccCcEEEccCCCC--CCcchhHHHHHHhcC-CCCce
Q 003819 509 LDIDVLVHGEPERNDMVEYFGEQLSGFAFTV-NGWVQSYGSR-CVKPPIIYGDVSRP--KAMTVFWSSMAQSMT-KRPMK 583 (793)
Q Consensus 509 ~Gldvi~~Ge~~r~d~v~~f~e~l~G~~~~~-~g~v~~~~~~-~~~~P~i~g~v~~~--~~~~~~~~~~aq~~t-~kpvK 583 (793)
+|||+|||||++|..|..+|.++|+|+.... .+...++|.+ +++.|+|+|+|+++ .|+ +++++|+++.+ +.++|
T Consensus 57 aGldvitDGE~rR~~w~~df~~~l~Gv~~~~~~~g~~f~~~~~~~~~~~v~G~I~~~~~~~~-~~~~~~l~~~~~~~~~K 135 (368)
T PRK06520 57 CGLKVVTDGEFRRAWWHFDFFDGLQGVERYEAEQGIQFNGVQTKARGVRVTGKLDFPDDHPM-LEDFRFLKSISGDATPK 135 (368)
T ss_pred hCCCeeecCCccccceeeehhhhcCCeeeecccCceeecCcccccCCeEEEEEecCCCCCch-HHHHHHHHhhccCCCCC
Confidence 9999999999999855547999999976322 1223455553 46789999999986 566 89999999987 45899
Q ss_pred eeechHHHHhhc-----ccccCCCChHHHHHHHHHHHHHHHHHHHHcCCcEEEEcCcccccCCCCC--------cccHHH
Q 003819 584 GMLTGPVTILNW-----SFVRNDQPRFETCYQIALAIKDEVEDLEKAGITVIQIDEAALREGLPLR--------KSEQDF 650 (793)
Q Consensus 584 ~~LtGPvTll~~-----s~~~~~~~~~e~~~~lA~al~~ev~~L~~aGv~~IQIDEPal~~~l~l~--------~~~~~~ 650 (793)
+++|||.|++.| +.++.|.++++++.+||.+|++|+++|+++||++||||||+|..+++.. ..+.+.
T Consensus 136 ~~ipgP~~l~~~~~~~~~~~~~Y~~~~~~~~dlA~al~~Ei~~L~~aG~~~IQiDep~l~~~~~~~~~~~~~~~~~~~~~ 215 (368)
T PRK06520 136 MTIPSPSVLHFRGGRKAIDATVYPDLDDYFDDLAKTWRDAIKAFYDAGCRYLQLDDTVWAYLCSDDQRQQIRERGDDPDE 215 (368)
T ss_pred EEcCcHHHHHhhccccccchhcCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEecCcchhhccChhhhhhhhhccCCHHH
Confidence 999999999965 5667789999999999999999999999999999999999999866421 124555
Q ss_pred HHHHHHHHHHHHhcCCCCCCeEEEEeCCCCch----------hHHHHHH-cCCCcEEEEecC--CC-ChhhHHHhhhccc
Q 003819 651 YLKWAVHSFRITNCGVQDTTQVHTHMCYSNFN----------DIIHSIM-DMDADVITIENS--RS-DEKLLSVFREGVK 716 (793)
Q Consensus 651 ~l~~av~a~~~~~~~v~~~~~I~lH~C~g~~~----------~i~~~l~-~l~~D~isiE~~--r~-~~~~L~~~~~~~~ 716 (793)
..+++++++|.++++++.++.|++|+|||||. .+++.|. ++++|++++|.. |+ ++++|..+..
T Consensus 216 l~~~~~~~~n~~~~~~p~d~~v~~HiC~Gn~~~~~~~~~~y~~i~~~L~~~~~vd~~~lE~~~~r~g~~e~L~~l~~--- 292 (368)
T PRK06520 216 LARIYARVLNKALAGKPADLTIGLHVCRGNFRSTWISEGGYEPVAETLFGGVNVDAFFLEYDNERAGGFEPLRFIPP--- 292 (368)
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEEEeecCCCCCccccccchhHHHHHHHhhcCCCeEEEEeccCCCCCcchHHHhhh---
Confidence 57899999999999999888999999999965 9999974 899999999954 33 3577777654
Q ss_pred CCCeEeeeeecCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEcCCCCCC------CCChhHHHHHHHHHHHHHHHH
Q 003819 717 YRAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLESNILWVNPDCGLK------TRKYSEVKPALSNMVAAAKLL 785 (793)
Q Consensus 717 ~~~~i~~GVvD~~s~~ves~eev~~~i~~al~~i~~~~l~vsPdCGL~------t~~~~~~~~kL~~mv~aa~~~ 785 (793)
.++.|++||||++|+.+|++|+|++||+++++++|++|||+||||||+ .++++++++||++|+++|+++
T Consensus 293 ~~k~v~lGvvd~~~~~vE~~e~I~~rI~~a~~~v~~~~l~lspdCGf~s~~~~~~l~~~~~~~KL~~l~~~a~~~ 367 (368)
T PRK06520 293 GHQQVVLGLITTKNGELENADDVKARLAEAAKFVPLEQLCLSPQCGFASTEEGNSLSEEQQWAKLRLVVEIANEV 367 (368)
T ss_pred cCCEEEeeEEeCCCCCCCCHHHHHHHHHHHHHhCCHHHEeeCcccCCCccccCCCCCHHHHHHHHHHHHHHHHHh
Confidence 246899999999999999999999999999999999999999999999 579999999999999999875
No 15
>PRK04326 methionine synthase; Provisional
Probab=100.00 E-value=4.9e-58 Score=503.29 Aligned_cols=324 Identities=35% Similarity=0.569 Sum_probs=300.3
Q ss_pred ccCCCCccccccccCCCcHHHHHHHHHHHccchhhHHHHHHhhccccceeeeehhhhcccCCHHHHHHHHHHHHHHHHHH
Q 003819 426 KLNLPNLPTTTIGSFPQTMDLRRVRREFKAKKRVLLLFHILLLNFHHFQIVFHKLVFYFRISEDDYVKTIKEEINNVVKL 505 (793)
Q Consensus 426 ~~~~p~~~tt~iGSfPr~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~i~~ 505 (793)
+.+.|+||||++||||||.+|++++++||+|+ ++.+++.++.+++++.+|+.
T Consensus 3 ~~~~~~~~~t~vGS~Prp~~l~~a~~~~~~g~----------------------------~~~~~l~~~~~~a~~~~v~~ 54 (330)
T PRK04326 3 HDKLPFLPTTVVGSYPKPKWLREAIRLHKAGK----------------------------ISEEDLHEAFDDAVRLVVKD 54 (330)
T ss_pred CCCCCCCcCccccCCCCCHHHHHHHHHHHcCC----------------------------CCHHHHHHHHHHHHHHHHHH
Confidence 45689999999999999999999999999999 99999999999999999999
Q ss_pred HHHcCCCcccCCCCccchhHHHHHhhccCceeeccceeeecCCccccCcEEEccCCCCCCcchhHHHHHHhcC-CCCcee
Q 003819 506 QEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSMAQSMT-KRPMKG 584 (793)
Q Consensus 506 Q~~~Gldvi~~Ge~~r~d~v~~f~e~l~G~~~~~~g~v~~~~~~~~~~P~i~g~v~~~~~~~~~~~~~aq~~t-~kpvK~ 584 (793)
|+++|+|+||||||+|.||+.||...++|+.+ .|++++||++||++|+|.|+++...+..+++++++++.+ ++|+|+
T Consensus 55 q~~~Gld~itdGe~~r~~~~~~f~~~~~G~~~--~~~~~~~~~~~~~~P~v~g~~~~~~~~~l~~~~~~~~~~~~~~vk~ 132 (330)
T PRK04326 55 HERAGVDIPVDGEMRREEMVEYFAERIEGFKF--YGPVRVWGNNYFRKPSVVGKIEYKEPMLVDEFEFAKSVTYTRPVKV 132 (330)
T ss_pred HHHhCCCeeeCCeEEcHhHHHHHHHhCCceec--cCceeccccccccCCeEEEeccCCCCCcHHHHHHHHhcccCCCceE
Confidence 99999999999999999999999999999975 578999999999999999999988888999999999997 799999
Q ss_pred eechHHHHhhcccccCCCChHHHHHHHHHHHHHHHHHHHHcCCcEEEEcCcccccCCCCCcccHHHHHHHHHHHHHHHhc
Q 003819 585 MLTGPVTILNWSFVRNDQPRFETCYQIALAIKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNC 664 (793)
Q Consensus 585 ~LtGPvTll~~s~~~~~~~~~e~~~~lA~al~~ev~~L~~aGv~~IQIDEPal~~~l~l~~~~~~~~l~~av~a~~~~~~ 664 (793)
+++||+|++.++....|.+..+++.+++.++++++++|.++|+++||||||++... +.++ ++++++++.+++
T Consensus 133 ~l~GP~Tla~~~~~~~y~~~~e~~~~l~~~~~~~i~~l~~~G~~~iqidEP~l~~~-------~~~~-~~~~~~l~~~~~ 204 (330)
T PRK04326 133 PITGPYTIAEWSFNEYYKDKEELVFDLAKVINEEIKNLVEAGAKYIQIDEPALATH-------PEDV-EIAVEALNRIVK 204 (330)
T ss_pred eccCHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEecCchhhcC-------HHHH-HHHHHHHHHHHh
Confidence 99999999998887777788999999999999999999999999999999998852 2344 899999999999
Q ss_pred CCCCCCeEEEEeCCCCchhHHHHHHcCCCcEEEEecCCCChhhHHHhhhcccCCCeEeeeeecCCCCCCCCHHHHHHHHH
Q 003819 665 GVQDTTQVHTHMCYSNFNDIIHSIMDMDADVITIENSRSDEKLLSVFREGVKYRAGIGPGVYDIHSPRIPSTEEIADRIN 744 (793)
Q Consensus 665 ~v~~~~~I~lH~C~g~~~~i~~~l~~l~~D~isiE~~r~~~~~L~~~~~~~~~~~~i~~GVvD~~s~~ves~eev~~~i~ 744 (793)
++. ..+++|+|||+++++++.|.++++|+|++|...++.+.|+.+.+ ...++.+++||||+++++++++|+|+++++
T Consensus 205 ~~~--~~v~lH~C~G~~~~~~~~l~~~~vd~i~~d~~~~~~~~l~~~~~-~~~~~~l~~Gvv~~~~~~~~~~e~v~~~v~ 281 (330)
T PRK04326 205 GIN--AKLGLHVCYGDYSRIAPYILEFPVDQFDLEFANGNYKLLDLLKE-YGFDKELGLGVIDVHSARVESVEEIKEAIK 281 (330)
T ss_pred CCC--CEEEEEEeCCCcHHHHHHHHhCCCCEEEEEeCCCCchhHHHhhc-cCCCCeEEeEEEeCCCCCCCCHHHHHHHHH
Confidence 884 57999999999999999999999999999987655567887776 344678999999999999999999999999
Q ss_pred HHHhhcCCCcEEEcCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHh
Q 003819 745 KMLAVLESNILWVNPDCGLKTRKYSEVKPALSNMVAAAKLLRTQLA 790 (793)
Q Consensus 745 ~al~~i~~~~l~vsPdCGL~t~~~~~~~~kL~~mv~aa~~~r~~~~ 790 (793)
++++.++.++++|+|||||.+.+++++++||++|++|++.+|+++.
T Consensus 282 ~~~~~~~~~~~~lsp~Cgl~~~~~~~a~~kl~~l~~~a~~~~~~~~ 327 (330)
T PRK04326 282 KGLEYVPPEKLYINPDCGLKLLPREIAYQKLVNMVKATREVREELD 327 (330)
T ss_pred HHHHhCChhhEEECCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999998899999999999999999999999999999999999875
No 16
>cd03311 CIMS_C_terminal_like CIMS - Cobalamine-independent methonine synthase, or MetE, C-terminal domain_like. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers the C-terminal barrel, and a few single-barrel sequences most similar to the C-terminal barrel. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Sidechains from
Probab=100.00 E-value=3.2e-57 Score=497.30 Aligned_cols=317 Identities=46% Similarity=0.718 Sum_probs=280.5
Q ss_pred cccccccCCCcHHHHHHHHHHHccchhhHHHHHHhhccccceeeeehhhhcccCCHHHHHHHHHHHHHHHHHHHHHcCCC
Q 003819 433 PTTTIGSFPQTMDLRRVRREFKAKKRVLLLFHILLLNFHHFQIVFHKLVFYFRISEDDYVKTIKEEINNVVKLQEELDID 512 (793)
Q Consensus 433 ~tt~iGSfPr~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~i~~Q~~~Gld 512 (793)
|||+|||||||.||++++++|.+|+ ++.++|++.++++|+++|+.|+++|||
T Consensus 1 ~tt~vGS~prp~~l~~a~~~~~~g~----------------------------~~~~~l~~~~~~ai~~~v~~Q~~~Gld 52 (332)
T cd03311 1 PTTTVGSFPRPKELREARAKFKKGE----------------------------ISAEELREAEDDAIADAVKDQEEAGLD 52 (332)
T ss_pred CCceecCCCCCHHHHHHHHHHhcCC----------------------------CCHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 7999999999999999999999999 999999999999999999999999999
Q ss_pred cccCCCCccchhHHHHHhhccCceeeccceeeecCCccccCcEEEccCCCCCCcchhHHHHHHhcCC-CCceeeechHHH
Q 003819 513 VLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSMAQSMTK-RPMKGMLTGPVT 591 (793)
Q Consensus 513 vi~~Ge~~r~d~v~~f~e~l~G~~~~~~g~v~~~~~~~~~~P~i~g~v~~~~~~~~~~~~~aq~~t~-kpvK~~LtGPvT 591 (793)
+|||||++|.||+.||.++|+||.. .||+++|++++|++|.+.|++++..++++.+.+++++.+. +|+|+.++||+|
T Consensus 53 iitDGe~~r~~~~~~f~~~l~G~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~l~GP~T 130 (332)
T cd03311 53 VVTDGEFRRSDMVEYFLERLDGFEF--TGWVQSYGSRYYKPPGIVGDVSRRPPMTVEEGKIAQSLTHPKPLKGILTGPVT 130 (332)
T ss_pred ccccCCcccccHHHHHHHhCCceee--ccceeeeccceeeCCeeecccccCCCCeEEEEEEeccCCCCccccccCCCCee
Confidence 9999999999999999999999975 4799999999999999999998878888999999998886 899999999999
Q ss_pred HhhcccccC---CCChHHHHHHHHHHHHHHHHHHHHcCCcEEEEcCcccccCCCCCcccHHHHHHHHHHHHHHHhcCCCC
Q 003819 592 ILNWSFVRN---DQPRFETCYQIALAIKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQD 668 (793)
Q Consensus 592 ll~~s~~~~---~~~~~e~~~~lA~al~~ev~~L~~aGv~~IQIDEPal~~~l~l~~~~~~~~l~~av~a~~~~~~~v~~ 668 (793)
++.++++.. |.+.++++.++|.++++|+++|.++||++||||||++...++.. ..+...+++..+++. +.+.+.
T Consensus 131 la~~~~~~~~~~y~~~~el~~~la~~~~~e~~~l~~aG~~~iQiDEP~l~~~~~~~--~~~~~~~~~~~~~~~-l~~~~~ 207 (332)
T cd03311 131 IPSPSFVRFRGYYPSREELAMDLALALREEIRDLYDAGCRYIQIDEPALAEGLPLE--PDDLAADYLKWANEA-LADRPD 207 (332)
T ss_pred ECCchhhcccccCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEeecchhhccCCcc--cHHHHHHHHHHHHHH-HHhCCC
Confidence 999998765 78899999999999999999999999999999999999876432 111222333333433 333233
Q ss_pred CCeEEEEeCCCCc----------hhHHHHHHcCCCcEEEEecCCCChhhHHHhhhcccCCCeEeeeeecCCCCCCCCHHH
Q 003819 669 TTQVHTHMCYSNF----------NDIIHSIMDMDADVITIENSRSDEKLLSVFREGVKYRAGIGPGVYDIHSPRIPSTEE 738 (793)
Q Consensus 669 ~~~I~lH~C~g~~----------~~i~~~l~~l~~D~isiE~~r~~~~~L~~~~~~~~~~~~i~~GVvD~~s~~ves~ee 738 (793)
+.++++|+|||++ .++++.|.++++|+|++|...+....++.++. +..++.+++||||++++++|++|+
T Consensus 208 ~~~v~lHiC~G~~~~~~~~~~~y~~i~~~l~~~~vd~~~le~~~~~~~~~~~l~~-~~~~k~l~~GvVd~~~~~~e~~e~ 286 (332)
T cd03311 208 DTQIHTHICYGNFRSTWAAEGGYEPIAEYIFELDVDVFFLEYDNSRAGGLEPLKE-LPYDKKVGLGVVDVKSPEVESPEE 286 (332)
T ss_pred CCEEEEEEECCCCcccccccCcHHHHHHHHHhCCCCEEEEEEcCCCCcchHHHHh-CCCCCEEEeeeecCCCCCCCCHHH
Confidence 5789999999998 89999999999999999976543334666665 445788999999999999999999
Q ss_pred HHHHHHHHHhhcCCCcEEEcCCCCCCCCChhHHHHHHHHHHHHHH
Q 003819 739 IADRINKMLAVLESNILWVNPDCGLKTRKYSEVKPALSNMVAAAK 783 (793)
Q Consensus 739 v~~~i~~al~~i~~~~l~vsPdCGL~t~~~~~~~~kL~~mv~aa~ 783 (793)
|+++|++++++++.+++||||||||.+++++.+++||++|+++++
T Consensus 287 v~~ri~~~~~~~~~~~l~lsp~CGl~~~~~~~a~~kl~~~~~~~~ 331 (332)
T cd03311 287 VKDRIEEAAKYVPLEQLWVSPDCGFATRERGNALTKLENMVKAAL 331 (332)
T ss_pred HHHHHHHHHhhCCHHHEEECCCCCCCcCCCchhHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999986
No 17
>cd03312 CIMS_N_terminal_like CIMS - Cobalamine-independent methonine synthase, or MetE, N-terminal domain_like. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers the N-terminal barrel, and a few single-barrel sequences most similar to the N-terminal barrel. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Side chains fro
Probab=100.00 E-value=4.1e-53 Score=467.40 Aligned_cols=300 Identities=20% Similarity=0.224 Sum_probs=265.7
Q ss_pred ccccccCCC---cHHHHHHHHHHHccchhhHHHHHHhhccccceeeeehhhhcccCCHHHHHHHHHHHHHHHHHHHHHcC
Q 003819 434 TTTIGSFPQ---TMDLRRVRREFKAKKRVLLLFHILLLNFHHFQIVFHKLVFYFRISEDDYVKTIKEEINNVVKLQEELD 510 (793)
Q Consensus 434 tt~iGSfPr---~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~i~~Q~~~G 510 (793)
||++| ||| ++||++|+++||+|+ ||.+++++.+++++.++|+.|+++|
T Consensus 2 ~~~~G-yPrig~~reLk~a~e~~~~g~----------------------------i~~~~L~~~~~~~~~~~~~~Q~~~G 52 (360)
T cd03312 2 THILG-FPRIGANRELKKALESYWKGK----------------------------ISEEELLATAKELRLRHWKLQKEAG 52 (360)
T ss_pred CCcCC-CCCCCCCHHHHHHHHHHHcCC----------------------------CCHHHHHHHHHHHHHHHHHHHHHcC
Confidence 56667 999 899999999999999 9999999999999999999999999
Q ss_pred CCcccCCCCccchhHHHHHhhccCce---------------e---------eccceeeecCCcc-ccCcEEEccCCC--C
Q 003819 511 IDVLVHGEPERNDMVEYFGEQLSGFA---------------F---------TVNGWVQSYGSRC-VKPPIIYGDVSR--P 563 (793)
Q Consensus 511 ldvi~~Ge~~r~d~v~~f~e~l~G~~---------------~---------~~~g~v~~~~~~~-~~~P~i~g~v~~--~ 563 (793)
||+||+|||+|+|+|..|...|+|+- | +..+|++||+||| |++|++.|++.. .
T Consensus 53 l~~it~Gef~~yd~~ld~~~~l~~ip~r~~~~~~~~~~~~yf~~arg~~~~~~~~mtk~f~tNyhY~vPei~~~~~~~~~ 132 (360)
T cd03312 53 IDLIPVGDFSLYDHVLDTSVLLGAIPERFGALGGLVDLDTYFAMARGNQDVPALEMTKWFDTNYHYIVPELSPDTEFKLA 132 (360)
T ss_pred CCEeccCCchhHHHHHHHHHHhCCCchhhccccCCccHHHHHHHhcCCCCCcchhceeEecCCCceeCcEECCCcccccC
Confidence 99999999999998877776655432 1 2246899999998 899999999986 5
Q ss_pred CCcchhHHHHHHhcCCCCceeeechHHHHhhcccccC-CCChHHHHHHHHHHHHHHHHHHHHcCCcEEEEcCcccccCCC
Q 003819 564 KAMTVFWSSMAQSMTKRPMKGMLTGPVTILNWSFVRN-DQPRFETCYQIALAIKDEVEDLEKAGITVIQIDEAALREGLP 642 (793)
Q Consensus 564 ~~~~~~~~~~aq~~t~kpvK~~LtGPvTll~~s~~~~-~~~~~e~~~~lA~al~~ev~~L~~aGv~~IQIDEPal~~~l~ 642 (793)
.++.++++++|++++ +++|++||||+|++.||+... |.+..+++.+|+.+|++|+++|+++||++||||||+|+.+++
T Consensus 133 ~~~~l~~~~~a~~~~-~~~K~~i~GP~T~~~ls~~~~~Y~~~~el~~dla~~y~~el~~L~~aG~~~IQiDEP~l~~~~~ 211 (360)
T cd03312 133 SNKLLDEYLEAKALG-INTKPVLLGPVTFLKLSKAKGGGFDRLSLLDKLLPVYKELLKKLAAAGAEWVQIDEPALVLDLP 211 (360)
T ss_pred cchHHHHHHHHHhcC-CCCcEEEECHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEeeCChhhcCCC
Confidence 688999999999985 899999999999999998766 789999999999999999999999999999999999998764
Q ss_pred CCcccHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCchhHHHHHHcCCCcEEEEecCCCChhhHHHhhhcccCCCeEe
Q 003819 643 LRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDADVITIENSRSDEKLLSVFREGVKYRAGIG 722 (793)
Q Consensus 643 l~~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~C~g~~~~i~~~l~~l~~D~isiE~~r~~~~~L~~~~~~~~~~~~i~ 722 (793)
....+++.++++.+.++++ +.++++|+|||+++++++.+.++++|+|++|+.++ ...++.++...+.++.|+
T Consensus 212 ------~~~~~~~~~~~~~l~~~~~-~~~l~l~tyfg~~~~~~~~l~~l~Vd~l~le~~~~-~~~l~~l~~~~~~~k~l~ 283 (360)
T cd03312 212 ------EEWLAAFKRAYEELAKAAP-GLKLLLATYFGSLGENLDLLASLPVDGLHLDLVRG-PENLEAVLKAGFADKVLS 283 (360)
T ss_pred ------HHHHHHHHHHHHHHhcCCC-CCcEEEEecccchHHHHHHHHcCCCCEEEEEecCC-cccHHHHHhcCCCCCEEE
Confidence 2467888999999988875 36899999999999999999999999999998765 345666655112257899
Q ss_pred eeeecCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEcCCCCCCCCChhHHH
Q 003819 723 PGVYDIHSPRIPSTEEIADRINKMLAVLESNILWVNPDCGLKTRKYSEVK 772 (793)
Q Consensus 723 ~GVvD~~s~~ves~eev~~~i~~al~~i~~~~l~vsPdCGL~t~~~~~~~ 772 (793)
+||||+||+|++++++++++|+++.+++ .+++||||||||.+++++...
T Consensus 284 lGvId~rn~~~ed~e~i~~~i~~a~~~v-~~~l~lsp~CgL~~lP~~~~~ 332 (360)
T cd03312 284 AGVVDGRNIWRADLAASLALLETLAAIL-GDRLVVSPSCSLLHVPVDLEN 332 (360)
T ss_pred EEEEcCCCCCcCCHHHHHHHHHHHHHHh-cCcEEEECCCCCcCCCccccc
Confidence 9999999999999999999999999998 899999999999998877654
No 18
>TIGR01371 met_syn_B12ind 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase. This model describes the cobalamin-independent methionine synthase. A family of uncharacterized archaeal proteins is homologous to the C-terminal region of this family. That family is excluded from this model but, along with this family, belongs to pfam model pfam01717.
Probab=100.00 E-value=5.2e-51 Score=485.79 Aligned_cols=316 Identities=16% Similarity=0.193 Sum_probs=267.0
Q ss_pred ceecccCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHcCCcccCCCCcccchhhhhhHhhhCCCCCc
Q 003819 2 ASHVVGYPRMGPKRELKFALESFWDGKSSADELQNVAADLRASIWNQMADAGIKFIPSNTFSYYDQVLDTTAMLGAVPPR 81 (793)
Q Consensus 2 ~t~~lG~PRig~~reLK~A~e~yw~g~is~~eL~~~~~~~~~~~~~~Q~~aGld~ItdGefs~yD~vLD~~~~~g~ip~R 81 (793)
+||+++|||+ .+||+|+++||+|++|+++|+++.++++.++|+.|+++|||+||||||+|||+|. |
T Consensus 424 tt~vGSfPr~---~~lk~are~~~~G~is~eel~~~~~~~i~~~i~~Qe~aGLDvi~~GEf~r~D~v~-----------~ 489 (750)
T TIGR01371 424 TTTIGSFPQT---PEVRKARAAYRKGEISEEEYEKFIKEEIKKVIKIQEELGLDVLVHGEFERNDMVE-----------Y 489 (750)
T ss_pred CcccCCCCCC---HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEeccCCeeeecHHH-----------H
Confidence 3666669999 7799999999999999999999999999999999999999999999999999984 3
Q ss_pred ccCCCCccccchhhhhccCCCCCCccccceecccCceeecceecCCCccccCCchhHHHHHHHHHcC-CCCceEeehHHH
Q 003819 82 YSWNGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHYIVPELGPDVNFSYASHKAVQEYKEAKALG-METVPVLVGPVS 160 (793)
Q Consensus 82 ~~~~~~~~~l~~yFa~arG~~~~~a~~mtKwFdtNYhY~vPe~~~~~~~~l~~~~~~~e~~~a~~~g-~~~K~vl~GP~T 160 (793)
|. ..|++||.|+||.. +.|++ -+|.+|++.++. ....+..+++|++|++++ .++|++|+||+|
T Consensus 490 F~-----e~L~G~~~~~~G~v--------~~~g~-~~v~~P~i~g~v--~~~~~~~v~~~~~aq~lt~~~vK~~LtGPvT 553 (750)
T TIGR01371 490 FG-----EKLAGFAFTQNGWV--------QSYGS-RCVRPPIIYGDV--SRPKPMTVKWSVYAQSLTSKPVKGMLTGPVT 553 (750)
T ss_pred Hh-----hcCCcEEEecCcce--------eecCC-cCCCCCEEeCCC--CCCCCCchHHHHHHHhccCCCCceEEechHH
Confidence 43 14778888888831 12333 346899999964 334455699999999996 899999999999
Q ss_pred HhhhccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEeeccccccCCC---hHHHHHHHHHHHHHHh---ccC
Q 003819 161 YLLLSKPAKGVEKSFSLLSLIDKIIPVYKEVVAELKAAGATWIQFDEPTLVLDLD---SHKLQAFSDAYSELQS---SLS 234 (793)
Q Consensus 161 ~l~ls~~~~~~~~~~~~~~ll~~L~~~Y~~~l~~L~~aG~~~VQiDEP~L~~d~~---~~~~~~~~~~y~~l~~---~~~ 234 (793)
|+.||+.. + +.++.+++.+|+++|++++++|+++||+|||||||+|+.+++ .++.+.+..+|+.+.. +.+
T Consensus 554 ~l~~s~~r-~---d~~~~~~~~~la~a~~~ev~~L~~aG~~~IQIDEPaL~~~l~~~~~~~~~~l~~a~~~~~~~~~~v~ 629 (750)
T TIGR01371 554 ILNWSFVR-D---DIPRKEIAYQIALAIRDEVLDLEEAGIKIIQIDEPALREGLPLRKSDWPEYLDWAVEAFRLATSGVK 629 (750)
T ss_pred HHhhhhhc-c---CCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeCchhhhcCCccchhHHHHHHHHHHHHHHHHhCCC
Confidence 99999842 2 357899999999999999999999999999999999998876 4566777777777654 333
Q ss_pred -CCcEEEEeccCCCchhhHHHHhcCCCccEEEEEeccCC-CChhhHhhhCCCCCEEEEEEeeCCCCCCCCHHHHHHHHHH
Q 003819 235 -GLNVLIETYFADVPAETYKILTSLKGVTGFGFDLIRGT-KTLDLIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQD 312 (793)
Q Consensus 235 -~~~i~l~tyfg~~~~~~~~~l~~lp~Vd~l~lD~~~~~-~~l~~l~~~~p~~k~l~lGvVdgrn~w~ed~~~i~~~i~~ 312 (793)
..+|++|+|||++ .++++.|.++| ||+|+||++++. +.++.+...+.-++.|++||||+||+|++|+++++++|++
T Consensus 630 ~~~~I~~H~C~g~~-~~i~~~l~~l~-vD~i~lE~~r~~~e~L~~~~~~~~~~~~ig~GVvD~~s~~ve~~eei~~~i~~ 707 (750)
T TIGR01371 630 DETQIHTHMCYSEF-NEIIESIADLD-ADVISIEASRSDMELLSAFKNGFGYPNGIGPGVYDIHSPRVPSVEEMADLIEK 707 (750)
T ss_pred CCCEEEEEEECCCc-HHHHHHHHhCC-CCEEEEEecCCChhHHHHhhhhcccCCeEEEEEEeCCCCCcCCHHHHHHHHHH
Confidence 4689999999999 89999999999 999999999853 4555554311113569999999999999999999999999
Q ss_pred HhhhcCCCcEEEeCCCCCcccccccccccCCcHHHHhHHHHHHHHHHHHHHHHHHcc
Q 003819 313 LAGTVGKDKVVVSTSCSLLHTAVDLENETKLDQEIKSWLAFAAQKVVEVNALAKALS 369 (793)
Q Consensus 313 ~~~~v~~e~l~vspsCgL~hvP~~~~~E~~l~~~~~~~lafA~qKl~El~~l~~~l~ 369 (793)
+.++++++||||||||||...+++ -|.+||..|+..++.++
T Consensus 708 a~~~i~~erl~vsPdCGL~tr~~~----------------~~~~~L~~mv~aa~~~r 748 (750)
T TIGR01371 708 ALQVLPAERLWVNPDCGLKTRNWE----------------EVIASLKNMVEAAKEAR 748 (750)
T ss_pred HHHhcCcceEEEeCCCCCCcCCHH----------------HHHHHHHHHHHHHHHHh
Confidence 999998899999999999988765 39999999999998775
No 19
>PRK00957 methionine synthase; Provisional
Probab=100.00 E-value=1.5e-50 Score=439.29 Aligned_cols=296 Identities=30% Similarity=0.450 Sum_probs=255.6
Q ss_pred CccccccccCCCcHHHHHHHHHHHccchhhHHHHHHhhccccceeeeehhhhcccCCHHHHHHHHHHHHHHHHHHHHHcC
Q 003819 431 NLPTTTIGSFPQTMDLRRVRREFKAKKRVLLLFHILLLNFHHFQIVFHKLVFYFRISEDDYVKTIKEEINNVVKLQEELD 510 (793)
Q Consensus 431 ~~~tt~iGSfPr~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~i~~Q~~~G 510 (793)
.||||+|||||+|.|+++... ..- .+.+.+++.++++|+++|+.|+++|
T Consensus 1 ~~~t~~vgs~p~~~~~~~~~~---~~~----------------------------~~~~~~~~~~~~ai~~~v~~q~~~G 49 (305)
T PRK00957 1 IMITTVVGSYPVVKGEPETLK---DKI----------------------------KGFFGLYDPYKPAIEEAVADQVKAG 49 (305)
T ss_pred CCCcceecCCCCCccchhHHH---Hhh----------------------------cCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 379999999999999655432 211 6678899999999999999999999
Q ss_pred CCcccCCCCccchhHHHHHhhccCceeeccceeeecCCccccCcEEEccCCCC-CCcchhHHHHHHhcCC-----CCcee
Q 003819 511 IDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPPIIYGDVSRP-KAMTVFWSSMAQSMTK-----RPMKG 584 (793)
Q Consensus 511 ldvi~~Ge~~r~d~v~~f~e~l~G~~~~~~g~v~~~~~~~~~~P~i~g~v~~~-~~~~~~~~~~aq~~t~-----kpvK~ 584 (793)
||++||||+ |.||+.+|.+.|+||. | |.+.|+|+++ +++++++++|+++.+. .|+|+
T Consensus 50 ld~vtdGe~-r~~~~~~f~~~l~G~~----------~------~~vvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vK~ 112 (305)
T PRK00957 50 IDIISDGQV-RGDMVEIFASNMPGFD----------G------KRVIGRVEPPAKPITLKDLKYAKKVAKKKDPNKGVKG 112 (305)
T ss_pred CCeecCCCc-cCchHHHHHhcCCCcc----------C------CeEEEeecCCCCCCcHHHHHHHHHHHhccCCCCceeE
Confidence 999999999 7899999999999993 1 3455999987 6889999999998863 48999
Q ss_pred eechHHHHhhccccc-CCCCh--HHHHHHHHHHHHHHHHHHHHcCCcEEEEcCcccccCCCCCcccHHHHHHHHHHHHHH
Q 003819 585 MLTGPVTILNWSFVR-NDQPR--FETCYQIALAIKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRI 661 (793)
Q Consensus 585 ~LtGPvTll~~s~~~-~~~~~--~e~~~~lA~al~~ev~~L~~aGv~~IQIDEPal~~~l~l~~~~~~~~l~~av~a~~~ 661 (793)
+|+||+|++.+++.. .|.+. .+++.+++.++++++++|.++|+++||||||++..++. + .+++.++++.
T Consensus 113 ~i~GP~Tla~~~~~~~~y~~~~~~~~~~dla~~~~~~i~~l~~~G~~~IqiDEP~l~~~~~----~----~~~~~~~~~~ 184 (305)
T PRK00957 113 IITGPSTLAYSLRVEPFYSDNKDEELIYDLARALRKEAEALEKAGVAMIQIDEPILSTGAY----D----LEVAKKAIDI 184 (305)
T ss_pred EecCHHHHHhhcccccccCCccHHHHHHHHHHHHHHHHHHHHHcCCCEEEecChhhhcCCc----h----HHHHHHHHHH
Confidence 999999999998864 34444 89999999999999999999999999999999997642 1 3467788888
Q ss_pred HhcCCCCCCeEEEEeCCCCchhHHHHHHcCCCcEEEEecCCCChhhHHHhhhcccCCCeEeeeeecCCCCCCCCHHHHHH
Q 003819 662 TNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDADVITIENSRSDEKLLSVFREGVKYRAGIGPGVYDIHSPRIPSTEEIAD 741 (793)
Q Consensus 662 ~~~~v~~~~~I~lH~C~g~~~~i~~~l~~l~~D~isiE~~r~~~~~L~~~~~~~~~~~~i~~GVvD~~s~~ves~eev~~ 741 (793)
+.++++ ..+++|+| |+++++++.|.++++|+|++|++++ .+.|+.+.+....++.+++||||+++++++++|++++
T Consensus 185 ~~~~i~--~~v~lH~C-G~~~~i~~~l~~~~vd~i~ld~~~~-~~~l~~l~~~~~~~k~l~~GvId~~~~~~e~~e~v~~ 260 (305)
T PRK00957 185 ITKGLN--VPVAMHVC-GDVSNIIDDLLKFNVDILDHEFASN-KKNLEILEEKDLIGKKIGFGCVDTKSKSVESVDEIKA 260 (305)
T ss_pred HHHhhC--CceEEEEC-CCcHHHHHHHHhCCCCEEEEeecCC-CCCHHHHhhhccCCCEEEEEEEcCCCCCCCCHHHHHH
Confidence 877774 57899999 9999999999999999999998764 3456666531234678999999999999999999999
Q ss_pred HHHHHHhhcCCCcEEEcCCCCCCCCChhHHHHHHHHHHHHHHHHH
Q 003819 742 RINKMLAVLESNILWVNPDCGLKTRKYSEVKPALSNMVAAAKLLR 786 (793)
Q Consensus 742 ~i~~al~~i~~~~l~vsPdCGL~t~~~~~~~~kL~~mv~aa~~~r 786 (793)
+|++++++++++++||||+|||.+.+++.+++||++|++||+.+|
T Consensus 261 ~i~~~~~~~~~~~l~lsp~CGl~~~~~~~~~~kL~~l~~aa~~~~ 305 (305)
T PRK00957 261 LIEEGIEILGAENILIDPDCGMRMLPRDVAFEKLKNMVEAAREIR 305 (305)
T ss_pred HHHHHHHhcCHHHEEECCCcCCCcCCHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999875
No 20
>PRK09121 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=100.00 E-value=9.1e-49 Score=429.59 Aligned_cols=313 Identities=19% Similarity=0.160 Sum_probs=268.8
Q ss_pred ceecccCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHcCCcccCCCCcccchhhhhhHhhhCCCCCc
Q 003819 2 ASHVVGYPRMGPKRELKFALESFWDGKSSADELQNVAADLRASIWNQMADAGIKFIPSNTFSYYDQVLDTTAMLGAVPPR 81 (793)
Q Consensus 2 ~t~~lG~PRig~~reLK~A~e~yw~g~is~~eL~~~~~~~~~~~~~~Q~~aGld~ItdGefs~yD~vLD~~~~~g~ip~R 81 (793)
+||+++|||+ ++|++|++.|-+|+++.++|.++.+++++..++.|+++|||+||||||+|-|++.++...++++.
T Consensus 5 tt~VGS~prp---~~l~~~~~~~~~g~i~~~~l~~~~~~ai~~~V~~Q~~aGldiitDGE~rR~~~~~~f~~~l~G~~-- 79 (339)
T PRK09121 5 TSTAGSLPKP---SWLAEPETLWSPWKLQGEELIEGKQDALRLSLQEQEDAGIDIVSDGEQTRQHFVTTFIEHLSGVD-- 79 (339)
T ss_pred CceecCCCCC---HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhCCCceeCCccccchHHHHHHHhCCCce--
Confidence 3556669999 99999999999999999999999999999999999999999999999999999999998888762
Q ss_pred ccCCCCccccchhhhhccCCCCCCccccceecccCceeecceecCCCccccCCchhHHHHHHHHHc-CCCCceEeehHHH
Q 003819 82 YSWNGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHYIVPELGPDVNFSYASHKAVQEYKEAKAL-GMETVPVLVGPVS 160 (793)
Q Consensus 82 ~~~~~~~~~l~~yFa~arG~~~~~a~~mtKwFdtNYhY~vPe~~~~~~~~l~~~~~~~e~~~a~~~-g~~~K~vl~GP~T 160 (793)
+. .+| .+ +.+ +|++|..|.++|+ ++...+..+++|+++++. +.++|.+||||+|
T Consensus 80 ~~--------------~~~-------~~-~~~-~~~~~~~p~v~G~--i~~~~~~~~~~~~~~~~~~~~~vK~~ipgP~t 134 (339)
T PRK09121 80 FE--------------KRE-------TV-RIR-DRYDASVPTVVGA--VSRQKPVFVEDAKFLRQQTTQPIKWALPGPMT 134 (339)
T ss_pred ee--------------cCC-------cc-eec-ccccCCCCEEEEe--cCCCCCCcHHHHHHHHhccCCCceEEeCcHHH
Confidence 10 011 11 345 7888999999984 555568889999999987 5679999999999
Q ss_pred HhhhccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEeeccccccCCChHHHHHHHHHHHHHHhccCCCcEEE
Q 003819 161 YLLLSKPAKGVEKSFSLLSLIDKIIPVYKEVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLI 240 (793)
Q Consensus 161 ~l~ls~~~~~~~~~~~~~~ll~~L~~~Y~~~l~~L~~aG~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l 240 (793)
++.++.+ .+ |.+.++++.||+.+|++++++|+++||++||||||+|++.. .+..+.+.++++...++.+ .++.+
T Consensus 135 l~~~~~~--~~--Y~~~~el~~dlA~al~~Ei~~L~~aG~~~IQiDeP~l~~~~-~~~~~~~v~~~n~~~~g~~-~~v~~ 208 (339)
T PRK09121 135 MIDTLYD--DH--YKSREKLAWEFAKILNQEAKELEAAGVDIIQFDEPAFNVFF-DEVNDWGVAALERAIEGLK-CETAV 208 (339)
T ss_pred HHHHhcc--cc--CCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEecccHHhhhh-HHHHHHHHHHHHHHHcCCC-CceEE
Confidence 9988774 22 46889999999999999999999999999999999999643 3347778888888887765 57889
Q ss_pred EeccCCC----------------c-hhhHHHHhcCCCccEEEEEeccCCCChhhHhhhCCCCCEEEEEEeeCCCCCCCCH
Q 003819 241 ETYFADV----------------P-AETYKILTSLKGVTGFGFDLIRGTKTLDLIKTEFPLGKYLFAGVVDGRNIWANDL 303 (793)
Q Consensus 241 ~tyfg~~----------------~-~~~~~~l~~lp~Vd~l~lD~~~~~~~l~~l~~~~p~~k~l~lGvVdgrn~w~ed~ 303 (793)
|+|||+. + +++++.|.+++ ||+|+|||++...+++++.. + ++|.|++||||+||+.+|++
T Consensus 209 HvC~G~~~~~~~~~~~~~~~~~g~y~~i~~~l~~~~-vd~~~lE~~~~r~~~~~l~~-~-~~~~v~lGvvd~k~~~lE~~ 285 (339)
T PRK09121 209 HICYGYGIKANTDWKKTLGSEWRQYEEAFPKLQKSN-IDIISLECHNSRVPMDLLEL-I-RGKKVMVGAIDVASDTIETP 285 (339)
T ss_pred EEeCCCCCCCccccccccccccccHHHHHHHHHhCC-CCEEEEEecCCCCCcHHHHh-c-ccCeEEeeeEeCCCCCCCCH
Confidence 9999843 0 47889999999 99999999976557777764 5 67899999999999999999
Q ss_pred HHHHHHHHHHhhhcCCCcEEEeCCCCCcccccccccccCCcHHHHhHHHHHHHHHHHHHHHHHHcc
Q 003819 304 ASSLTTLQDLAGTVGKDKVVVSTSCSLLHTAVDLENETKLDQEIKSWLAFAAQKVVEVNALAKALS 369 (793)
Q Consensus 304 ~~i~~~i~~~~~~v~~e~l~vspsCgL~hvP~~~~~E~~l~~~~~~~lafA~qKl~El~~l~~~l~ 369 (793)
+++++||+++++++|++||||||||||..+|.+ -|.+||+.|+..++.++
T Consensus 286 e~I~~rI~~a~~~v~~~~l~lspdCGf~~l~~~----------------~a~~KL~~l~~~a~~~~ 335 (339)
T PRK09121 286 EEVADTLRKALQFVDADKLYPCTNCGMAPLSRD----------------VARGKLNALSAGAEIVR 335 (339)
T ss_pred HHHHHHHHHHHHhCCHHHEEECCCCCCCcCCHH----------------HHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999987765 49999999999887654
No 21
>PRK04326 methionine synthase; Provisional
Probab=100.00 E-value=1.5e-48 Score=428.21 Aligned_cols=309 Identities=21% Similarity=0.300 Sum_probs=267.7
Q ss_pred ceeccc-CCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHcCCcccCCCCcccchhhhhhHhhhCCCCC
Q 003819 2 ASHVVG-YPRMGPKRELKFALESFWDGKSSADELQNVAADLRASIWNQMADAGIKFIPSNTFSYYDQVLDTTAMLGAVPP 80 (793)
Q Consensus 2 ~t~~lG-~PRig~~reLK~A~e~yw~g~is~~eL~~~~~~~~~~~~~~Q~~aGld~ItdGefs~yD~vLD~~~~~g~ip~ 80 (793)
.||++| |||+ ++||+|+|+||+|+++.++|.++.+++++.+|+.|+++|+|+||||||||.|++
T Consensus 10 ~~t~vGS~Prp---~~l~~a~~~~~~g~~~~~~l~~~~~~a~~~~v~~q~~~Gld~itdGe~~r~~~~------------ 74 (330)
T PRK04326 10 PTTVVGSYPKP---KWLREAIRLHKAGKISEEDLHEAFDDAVRLVVKDHERAGVDIPVDGEMRREEMV------------ 74 (330)
T ss_pred cCccccCCCCC---HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCeEEcHhHH------------
Confidence 467777 9999 889999999999999999999999999999999999999999999999987654
Q ss_pred cccCCCCccccchhhhhcc-CCCCCCccccceecccCceeecceecCCCccccCCchhHHHHHHHHHc--CCCCceEeeh
Q 003819 81 RYSWNGGEIGFDVYFSMAR-GNASVPAMEMTKWFDTNYHYIVPELGPDVNFSYASHKAVQEYKEAKAL--GMETVPVLVG 157 (793)
Q Consensus 81 R~~~~~~~~~l~~yFa~ar-G~~~~~a~~mtKwFdtNYhY~vPe~~~~~~~~l~~~~~~~e~~~a~~~--g~~~K~vl~G 157 (793)
.||.+++ |.. ...-+||||||| |++|++.+ ++++..+.++++++++++. +.++|++|+|
T Consensus 75 ------------~~f~~~~~G~~---~~~~~~~~~~~~-~~~P~v~g--~~~~~~~~~l~~~~~~~~~~~~~~vk~~l~G 136 (330)
T PRK04326 75 ------------EYFAERIEGFK---FYGPVRVWGNNY-FRKPSVVG--KIEYKEPMLVDEFEFAKSVTYTRPVKVPITG 136 (330)
T ss_pred ------------HHHHHhCCcee---ccCceecccccc-ccCCeEEE--eccCCCCCcHHHHHHHHhcccCCCceEeccC
Confidence 4566665 421 123478999999 99999988 5666678999999999988 7889999999
Q ss_pred HHHHhhhccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEeeccccccCCChHHHHHHHHHHHHHHhccCCCc
Q 003819 158 PVSYLLLSKPAKGVEKSFSLLSLIDKIIPVYKEVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLN 237 (793)
Q Consensus 158 P~T~l~ls~~~~~~~~~~~~~~ll~~L~~~Y~~~l~~L~~aG~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~ 237 (793)
|+|++.++.. .+ +.+..+++.+|+++|++++++|.++||++||||||+|+... ++.+.+..+|+.+.++. +..
T Consensus 137 P~Tla~~~~~--~~--y~~~~e~~~~l~~~~~~~i~~l~~~G~~~iqidEP~l~~~~--~~~~~~~~~l~~~~~~~-~~~ 209 (330)
T PRK04326 137 PYTIAEWSFN--EY--YKDKEELVFDLAKVINEEIKNLVEAGAKYIQIDEPALATHP--EDVEIAVEALNRIVKGI-NAK 209 (330)
T ss_pred HHHHHhhccc--cc--CCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEecCchhhcCH--HHHHHHHHHHHHHHhCC-CCE
Confidence 9999977663 22 35778999999999999999999999999999999999743 55688889999988765 357
Q ss_pred EEEEeccCCCchhhHHHHhcCCCccEEEEEeccC-CCChhhHhhhCCCCCEEEEEEeeCCCCCCCCHHHHHHHHHHHhhh
Q 003819 238 VLIETYFADVPAETYKILTSLKGVTGFGFDLIRG-TKTLDLIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGT 316 (793)
Q Consensus 238 i~l~tyfg~~~~~~~~~l~~lp~Vd~l~lD~~~~-~~~l~~l~~~~p~~k~l~lGvVdgrn~w~ed~~~i~~~i~~~~~~ 316 (793)
+.||+|||++ .++++.+.+++ ||+|++|++++ .++++.+.+ .+.+|.|++|+||++|+|++++++++++++++.+.
T Consensus 210 v~lH~C~G~~-~~~~~~l~~~~-vd~i~~d~~~~~~~~l~~~~~-~~~~~~l~~Gvv~~~~~~~~~~e~v~~~v~~~~~~ 286 (330)
T PRK04326 210 LGLHVCYGDY-SRIAPYILEFP-VDQFDLEFANGNYKLLDLLKE-YGFDKELGLGVIDVHSARVESVEEIKEAIKKGLEY 286 (330)
T ss_pred EEEEEeCCCc-HHHHHHHHhCC-CCEEEEEeCCCCchhHHHhhc-cCCCCeEEeEEEeCCCCCCCCHHHHHHHHHHHHHh
Confidence 8999999999 88999999999 99999999874 356666654 32378999999999999999999999999999998
Q ss_pred cCCCcEEEeCCCCCcccccccccccCCcHHHHhHHHHHHHHHHHHHHHHHHcc
Q 003819 317 VGKDKVVVSTSCSLLHTAVDLENETKLDQEIKSWLAFAAQKVVEVNALAKALS 369 (793)
Q Consensus 317 v~~e~l~vspsCgL~hvP~~~~~E~~l~~~~~~~lafA~qKl~El~~l~~~l~ 369 (793)
++.++++|||||||.++|++ -|.+||+.|+..++.++
T Consensus 287 ~~~~~~~lsp~Cgl~~~~~~----------------~a~~kl~~l~~~a~~~~ 323 (330)
T PRK04326 287 VPPEKLYINPDCGLKLLPRE----------------IAYQKLVNMVKATREVR 323 (330)
T ss_pred CChhhEEECCCCCCCcCCHH----------------HHHHHHHHHHHHHHHHH
Confidence 88899999999999999976 49999999999988775
No 22
>PRK05222 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; Provisional
Probab=100.00 E-value=7.8e-48 Score=459.06 Aligned_cols=314 Identities=21% Similarity=0.252 Sum_probs=268.8
Q ss_pred cccccccCCC---cHHHHHHHHHHHccchhhHHHHHHhhccccceeeeehhhhcccCCHHHHHHHHHHHHHHHHHHHHHc
Q 003819 433 PTTTIGSFPQ---TMDLRRVRREFKAKKRVLLLFHILLLNFHHFQIVFHKLVFYFRISEDDYVKTIKEEINNVVKLQEEL 509 (793)
Q Consensus 433 ~tt~iGSfPr---~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~i~~Q~~~ 509 (793)
.||++| ||| ++||++|+++||+|+ ||.++|.+..+++++++|+.|+++
T Consensus 3 ~~~~lG-yPRiG~~reLK~A~e~yw~g~----------------------------is~~eL~~~~~~~~~~~~~~Q~~~ 53 (758)
T PRK05222 3 KTHILG-FPRIGPRRELKKALESYWAGK----------------------------ISEEELLATARELRARHWQRQKEA 53 (758)
T ss_pred ccccCC-CCCCCCCHHHHHHHHHHHcCC----------------------------CCHHHHHHHHHHHHHHHHHHHHHC
Confidence 356666 999 799999999999999 999999999999999999999999
Q ss_pred CCCcccCCCCccchhHHHHHhhccCce---------------ee---------ccceeeecCCcc-ccCcEEEccCCC--
Q 003819 510 DIDVLVHGEPERNDMVEYFGEQLSGFA---------------FT---------VNGWVQSYGSRC-VKPPIIYGDVSR-- 562 (793)
Q Consensus 510 Gldvi~~Ge~~r~d~v~~f~e~l~G~~---------------~~---------~~g~v~~~~~~~-~~~P~i~g~v~~-- 562 (793)
|||+||+|||+|+|+|..|...|+|+- |. ..+|++||+||| |++|++.|+++.
T Consensus 54 Gld~it~Gdfs~yd~vLD~~~~lg~ip~rf~~~~~~~~~~~yF~~arg~~~~~~~emtKwF~tNYhY~VPei~g~~~~~~ 133 (758)
T PRK05222 54 GLDLIPVGDFSYYDHVLDTAVLLGAIPERFGNLGGSVDLDTYFAMARGGKDVAALEMTKWFNTNYHYIVPEFDPDTQFKL 133 (758)
T ss_pred CCCEeccCCcccHHHHHHHHHHhCCCchhhccccCCCccccceecccCCCCcccccceEEecCCCceeCcEEcCCccccc
Confidence 999999999999998877665554432 11 356899999998 899999999875
Q ss_pred CCCcchhHHHHHHhcCCCCceeeechHHHHhhcccc-cCCCChHHHHHHHHHHHHHHHHHHHHcCCcEEEEcCcccccCC
Q 003819 563 PKAMTVFWSSMAQSMTKRPMKGMLTGPVTILNWSFV-RNDQPRFETCYQIALAIKDEVEDLEKAGITVIQIDEAALREGL 641 (793)
Q Consensus 563 ~~~~~~~~~~~aq~~t~kpvK~~LtGPvTll~~s~~-~~~~~~~e~~~~lA~al~~ev~~L~~aGv~~IQIDEPal~~~l 641 (793)
..+..++++++|+++ +.++|++||||+|++.|+.. ..+.+..+++.+|+.+|++++++|.++||++||||||+|...+
T Consensus 134 ~~~~~l~e~~~ak~~-g~~~K~vl~GP~T~l~ls~~~~~~~~~~ell~dl~~~y~~~l~~L~~aG~~~IQiDEP~l~~~~ 212 (758)
T PRK05222 134 TSNKLLDEFEEAKAL-GINTKPVLLGPVTFLWLSKSKGEGFDRLDLLDDLLPVYAELLAELAAAGAEWVQIDEPALVLDL 212 (758)
T ss_pred CCCcHHHHHHHHHhC-CCCceEEEccHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEeeCchhhcCC
Confidence 467889999999998 78999999999999998885 4567889999999999999999999999999999999999876
Q ss_pred CCCcccHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCchhHHHHHHcCCCcEEEEecCCCChhhHHHhhhcccCCCeE
Q 003819 642 PLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDADVITIENSRSDEKLLSVFREGVKYRAGI 721 (793)
Q Consensus 642 ~l~~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~C~g~~~~i~~~l~~l~~D~isiE~~r~~~~~L~~~~~~~~~~~~i 721 (793)
+ ....+++.++|+.+....+ ..++++|+|||+++++++.+.++++|+|++|+.++.. .++.+...++.++.|
T Consensus 213 ~------~~~~~~~~~~y~~l~~~~~-~~~i~l~tyfg~~~~~~~~l~~l~Vd~l~LD~~~~~~-~l~~l~~~~p~~k~l 284 (758)
T PRK05222 213 P------QEWLEAFKRAYEALAAAKP-RPKLLLATYFGSLNDALDLLASLPVDGLHLDLVRGPE-QLAALLKYFPADKVL 284 (758)
T ss_pred C------HHHHHHHHHHHHHHhcCCC-CCCEEEEeeccchhhHHHHHHcCCCCEEEEEeeCCcc-chHHHHhhcCCCCEE
Confidence 4 2345677888888877553 3489999999999999999999999999999776532 355554412346789
Q ss_pred eeeeecCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEcCCCCCCCCChhH----------------HHHHHHHHHHHHHHH
Q 003819 722 GPGVYDIHSPRIPSTEEIADRINKMLAVLESNILWVNPDCGLKTRKYSE----------------VKPALSNMVAAAKLL 785 (793)
Q Consensus 722 ~~GVvD~~s~~ves~eev~~~i~~al~~i~~~~l~vsPdCGL~t~~~~~----------------~~~kL~~mv~aa~~~ 785 (793)
++||||+||+|+++++++.++|+++.+++ +++||||||||.+.+.+. |.+||+-++..++.+
T Consensus 285 ~lGVId~rn~~~ed~e~v~~ri~~a~~~v--e~L~lspsCgL~~vP~~~~~E~~l~~~~~~~~afa~~k~~e~~~l~~~~ 362 (758)
T PRK05222 285 SAGVIDGRNIWRADLEAALALLEPLAAKV--DRLWVAPSCSLLHVPVDLDAETKLDPELKSWLAFAKQKLEELALLARAL 362 (758)
T ss_pred EEEEEcCCCCCcCCHHHHHHHHHHHHHhh--ccEEEeCCCCCcCCCccccccccCCHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999987 999999999999976632 567888887777666
Q ss_pred H
Q 003819 786 R 786 (793)
Q Consensus 786 r 786 (793)
.
T Consensus 363 ~ 363 (758)
T PRK05222 363 N 363 (758)
T ss_pred h
Confidence 4
No 23
>PLN02475 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
Probab=100.00 E-value=5.6e-48 Score=457.73 Aligned_cols=314 Identities=17% Similarity=0.192 Sum_probs=268.1
Q ss_pred ccccccCCC---cHHHHHHHHHHHccchhhHHHHHHhhccccceeeeehhhhcccCCHHHHHHHHHHHHHHHHHHHHHcC
Q 003819 434 TTTIGSFPQ---TMDLRRVRREFKAKKRVLLLFHILLLNFHHFQIVFHKLVFYFRISEDDYVKTIKEEINNVVKLQEELD 510 (793)
Q Consensus 434 tt~iGSfPr---~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~i~~Q~~~G 510 (793)
|||+.+||| ++||++++++||+|+ ++.+++.+..+++++++|+.|+++|
T Consensus 2 ~~~~lGyPRig~~ReLKka~e~yw~G~----------------------------is~eeL~~~~~~~~~~~~~~Q~~aG 53 (766)
T PLN02475 2 ASHIVGYPRMGPKRELKFALESFWDGK----------------------------SSAEDLQKVAADLRSSIWKQMSAAG 53 (766)
T ss_pred CccccCCCCCCCChHHHHHHHHHHCCC----------------------------CCHHHHHHHHHHHHHHHHHHHHHcC
Confidence 455555999 899999999999999 9999999999999999999999999
Q ss_pred CCcccCCCCccch-------hHHHHHhhc---cC-------ce-------eeccceeeecCCcc-ccCcEEEccCC--CC
Q 003819 511 IDVLVHGEPERND-------MVEYFGEQL---SG-------FA-------FTVNGWVQSYGSRC-VKPPIIYGDVS--RP 563 (793)
Q Consensus 511 ldvi~~Ge~~r~d-------~v~~f~e~l---~G-------~~-------~~~~g~v~~~~~~~-~~~P~i~g~v~--~~ 563 (793)
||+|++|||+|+| |+..|.+++ +| |+ ....+|++||+||| |++|++.|++. ..
T Consensus 54 ld~ItdGdfsryD~vLD~~~m~g~ip~r~~~~~g~~~l~~yfamaRG~~~~~a~emtKwFdtNYHY~VPe~~~~~~f~~~ 133 (766)
T PLN02475 54 IKYIPSNTFSYYDQVLDTTAMLGAVPPRYGWTGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHYIVPELGPEVKFSYA 133 (766)
T ss_pred CCCcccCCcchhHHHHhHHHHhccchhhhhccCCcchHHHHHHHhcCCcccccccceEEecCCcceECcEECCCCccccC
Confidence 9999999999999 555555433 34 21 11245899999998 99999999987 55
Q ss_pred CCcchhHHHHHHhcCCCCceeeechHHHHhhcccccC--C--CChHHHHHHHHHHHHHHHHHHHHcCCcEEEEcCccccc
Q 003819 564 KAMTVFWSSMAQSMTKRPMKGMLTGPVTILNWSFVRN--D--QPRFETCYQIALAIKDEVEDLEKAGITVIQIDEAALRE 639 (793)
Q Consensus 564 ~~~~~~~~~~aq~~t~kpvK~~LtGPvTll~~s~~~~--~--~~~~e~~~~lA~al~~ev~~L~~aGv~~IQIDEPal~~ 639 (793)
.+..++++++|++++ ...|++|+||+|++.||+... | .++.+++.+|+.+|++++++|.++||.+||||||+|..
T Consensus 134 ~~~~l~e~~eA~~~g-~~~kpVl~GP~T~l~Lsk~~~~~~~~~~~~~ll~~L~~~y~~~l~~L~~~Gv~~IQiDEP~L~~ 212 (766)
T PLN02475 134 SHKAVNEYKEAKALG-VDTVPVLVGPVSYLLLSKPAKGVDKSFDLLSLLDKILPVYKEVIAELKAAGASWIQFDEPALVM 212 (766)
T ss_pred ccchHHHHHHHHHcC-CCCCcEEECHHHHHHHhcccccccCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEeCchhhc
Confidence 688899999999985 456778999999999999652 2 45889999999999999999999999999999999997
Q ss_pred CCCCCcccHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCch-hHHHHHHcCC-CcEEEEecCCCChhhHHHhhhcccC
Q 003819 640 GLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFN-DIIHSIMDMD-ADVITIENSRSDEKLLSVFREGVKY 717 (793)
Q Consensus 640 ~l~l~~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~C~g~~~-~i~~~l~~l~-~D~isiE~~r~~~~~L~~~~~~~~~ 717 (793)
+++ .+.++++.++|+.+.++++ ..+|++|+|||+++ ++++.+.+++ +|+|++|+++++ +.|+.+.. ..+
T Consensus 213 d~~------~~~~~~~~~ay~~l~~~~~-~~~i~l~TyFg~~~~~~~~~l~~lp~Vd~l~lD~v~~~-~~L~~l~~-~~~ 283 (766)
T PLN02475 213 DLE------SHKLQAFKTAYAELESTLS-GLNVLVETYFADVPAEAYKTLTSLKGVTAFGFDLVRGT-KTLDLIKK-AGF 283 (766)
T ss_pred CCC------HHHHHHHHHHHHHHHhccC-CCeEEEEccCCCCCHHHHHHHHcCCCCCEEEEEecCCh-hhHHHHHh-ccC
Confidence 753 2567889999999988875 36899999999999 6999999999 999999998864 56777755 333
Q ss_pred --CCeEeeeeecCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEcCCCCCCCCChhH----------------HHHHHHHHH
Q 003819 718 --RAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLESNILWVNPDCGLKTRKYSE----------------VKPALSNMV 779 (793)
Q Consensus 718 --~~~i~~GVvD~~s~~ves~eev~~~i~~al~~i~~~~l~vsPdCGL~t~~~~~----------------~~~kL~~mv 779 (793)
++.|++||||+||+|+++++++.++|+++.+.++++++||+|||||.|.+++- |.+||.-++
T Consensus 284 p~~k~L~~GVVDgRNiw~~dl~~~~~~i~~~~~~~~~~~l~v~psCsLlhvP~~~~~e~~l~~~~~~~~afa~~k~~e~~ 363 (766)
T PLN02475 284 PSGKYLFAGVVDGRNIWANDLAASLATLQALEGIVGKDKLVVSTSCSLLHTAVDLVNETKLDKELKSWLAFAAQKVVEVV 363 (766)
T ss_pred CCCCeEEEEEEeCCCcccCCHHHHHHHHHHHHHhcCCCcEEEeCCCCCccCCccccccccCCHHHHhhhhhHHHHHHHHH
Confidence 67899999999999999999999999999999988999999999999964432 567777776
Q ss_pred HHHHHH
Q 003819 780 AAAKLL 785 (793)
Q Consensus 780 ~aa~~~ 785 (793)
.-++.+
T Consensus 364 ~l~~~~ 369 (766)
T PLN02475 364 ALAKAL 369 (766)
T ss_pred HHHHHH
Confidence 665555
No 24
>PRK06052 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=100.00 E-value=1.4e-47 Score=408.13 Aligned_cols=290 Identities=18% Similarity=0.262 Sum_probs=241.9
Q ss_pred ccccccccCCCcHHHHHHHHHHH---ccchhhHHHHHHhhccccceeeeehhhhcccCCHHHHHHHHHHHHHHHHHHHHH
Q 003819 432 LPTTTIGSFPQTMDLRRVRREFK---AKKRVLLLFHILLLNFHHFQIVFHKLVFYFRISEDDYVKTIKEEINNVVKLQEE 508 (793)
Q Consensus 432 ~~tt~iGSfPr~~~l~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~i~~Q~~ 508 (793)
+-+|++||||+|.++++ +.++ .|+ ++.+++.+ .+++++..|.+
T Consensus 4 iv~~~iGsyP~P~~~~k--~~~~~~~~g~----------------------------~~~e~l~~----~~~~~~~~q~d 49 (344)
T PRK06052 4 IIFDDIGSFPLPEGVTR--EWVENAFETR----------------------------EEDEKLFS----VVRSAFQMKID 49 (344)
T ss_pred EEeccCCCCCCCccccH--HHHhhhhcCC----------------------------CcHHHHHH----HHHHHHHHHHh
Confidence 34699999999999998 5665 467 88888877 78899999999
Q ss_pred cCCCcccCCCCccchhHHHHHhhccCceeeccceeeecCCccccCcEEEccCCCCCCc--chhHHHHH----HhcCC--C
Q 003819 509 LDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPPIIYGDVSRPKAM--TVFWSSMA----QSMTK--R 580 (793)
Q Consensus 509 ~Gldvi~~Ge~~r~d~v~~f~e~l~G~~~~~~g~v~~~~~~~~~~P~i~g~v~~~~~~--~~~~~~~a----q~~t~--k 580 (793)
+|+|++|+|.|+ ||+.+|.+.++|=. +|+. |-+. ...... -++-++.+ +.-|+ +
T Consensus 50 AGld~~Tdgqlr--Dm~~~fl~~i~~~~------------~~~~-p~~~---~~~~a~i~el~~~~~~~~~~~~~~~~~~ 111 (344)
T PRK06052 50 AGVQVPTYPQFR--DMIEQFLDIIRDEK------------CCEE-PYVV---KEECAKILELEAIEEVAKEYKEETGETL 111 (344)
T ss_pred cCCccccchHHH--HHHHhHHHHHcCCc------------ccCC-Ceee---ehhhhhHHHHHHHHHHHHHHHHhhCCCC
Confidence 999999999998 99999999888642 2232 3221 111111 12222222 12233 5
Q ss_pred CceeeechHHHHhhccccc-CCCC-hHHHHHHHHHHHHHHHHHHHHcCCcEEEEcCcccccCCCCCcccHHHHHHHHHHH
Q 003819 581 PMKGMLTGPVTILNWSFVR-NDQP-RFETCYQIALAIKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHS 658 (793)
Q Consensus 581 pvK~~LtGPvTll~~s~~~-~~~~-~~e~~~~lA~al~~ev~~L~~aGv~~IQIDEPal~~~l~l~~~~~~~~l~~av~a 658 (793)
+||+++|||+||+.|+|++ .|.+ +.+++.++|.++++|++.|.++|+++||||||+|+.+.+++ ...+|+++|
T Consensus 112 ~VKv~iTGP~tL~~~~f~~~~Y~d~~~~la~~ia~~l~~e~~~l~~~gv~~IqIDEP~l~~~~~~~-----~~~~~~i~A 186 (344)
T PRK06052 112 EVRVCVTGPTELYLQEFGGTIYTDILLILAKSVERFVENAIKSAKNFKIKTISIDEPSLGINPEIQ-----FSDDEIISA 186 (344)
T ss_pred CeEEEecCHHHHHHHHcCCccccchHHHHHHHHHHHHHHHHHHHHHCCCCEEEecCcccccCCccc-----cCHHHHHHH
Confidence 7999999999999999987 6777 89999999999999999999999999999999999886543 357899999
Q ss_pred HHHH-----hcCCCCCCeEEEEeCCCCchhHH-HHHHcCC-CcEEEEecCCCChhhHHHhhhccc---CCCeEeeeeecC
Q 003819 659 FRIT-----NCGVQDTTQVHTHMCYSNFNDII-HSIMDMD-ADVITIENSRSDEKLLSVFREGVK---YRAGIGPGVYDI 728 (793)
Q Consensus 659 ~~~~-----~~~v~~~~~I~lH~C~g~~~~i~-~~l~~l~-~D~isiE~~r~~~~~L~~~~~~~~---~~~~i~~GVvD~ 728 (793)
++.+ .+|+ +++||+|+ +++ +.+++++ +|+|++|+++++ +.|+.|.+ .. +++.||+||+|+
T Consensus 187 l~~a~~~a~~~gv--dv~i~lH~------~l~~~~i~~~~~idvi~~E~A~~~-~~L~~l~~-~~~e~~dk~ig~GV~dt 256 (344)
T PRK06052 187 LTVASTYARKQGA--DVEIHLHS------PLYYELICETPGINVIGVESAATP-SYLDLIDK-KVLEDTDTFLRVGVART 256 (344)
T ss_pred HHHHHhhhccCCc--ceEEEEeh------HhhHHHHhcCCCCCEEeeeccCCh-HHHHHHhh-hhhhhcCCceEEeEEEc
Confidence 9999 7777 48999999 367 9999999 999999988865 56777766 33 678999999999
Q ss_pred --C------------------------CCCCCCHHHHHHHHHHHHhhcCCCcEEEcCCCCCCCC-ChhHHHHHHHHHHHH
Q 003819 729 --H------------------------SPRIPSTEEIADRINKMLAVLESNILWVNPDCGLKTR-KYSEVKPALSNMVAA 781 (793)
Q Consensus 729 --~------------------------s~~ves~eev~~~i~~al~~i~~~~l~vsPdCGL~t~-~~~~~~~kL~~mv~a 781 (793)
| ++.+||+|+|.++|+++++++|++++||||||||+++ .++.+.+||+|||+|
T Consensus 257 d~~~~~~~~~~~~~~n~~~~~~~~~~~~~~VEsveEI~~rI~~ale~i~~e~lwVNPDCGLK~~~e~~~A~~KL~nmv~a 336 (344)
T PRK06052 257 DIFSLIAILNEKYGTNAWKDKEYLQEIVTELETPEVIKKRLEKAYSIFGDRIKYVGPDCGLGSWPSQELAFRLLENVAKA 336 (344)
T ss_pred hhhcchhhhhhhcccccccchhhccccCCCCCCHHHHHHHHHHHHHhCChhhEEECCCCCCCCChhhHHHHHHHHHHHHH
Confidence 9 9999999999999999999999999999999999988 588899999999999
Q ss_pred HHHHHHH
Q 003819 782 AKLLRTQ 788 (793)
Q Consensus 782 a~~~r~~ 788 (793)
++.+|++
T Consensus 337 a~~~r~e 343 (344)
T PRK06052 337 INEFRAE 343 (344)
T ss_pred HHHHHhc
Confidence 9999964
No 25
>cd03310 CIMS_like CIMS - Cobalamine-independent methonine synthase, or MetE. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers both the N-and C-terminal barrel, and some single-barrel sequences, mostly from Archaea. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Side chains from both barrels contribute to the binding o
Probab=100.00 E-value=5.8e-47 Score=413.83 Aligned_cols=307 Identities=21% Similarity=0.243 Sum_probs=255.7
Q ss_pred CceecccCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHcCCcccCCCCcccchhhhhhHhhhCCCCC
Q 003819 1 MASHVVGYPRMGPKRELKFALESFWDGKSSADELQNVAADLRASIWNQMADAGIKFIPSNTFSYYDQVLDTTAMLGAVPP 80 (793)
Q Consensus 1 ~~t~~lG~PRig~~reLK~A~e~yw~g~is~~eL~~~~~~~~~~~~~~Q~~aGld~ItdGefs~yD~vLD~~~~~g~ip~ 80 (793)
++|++++|||+ .++++|++.||+|+++.+++++..++++.++|+.|+++|+|+|||||| ||+|+|++..++..|+
T Consensus 1 ~~t~vGS~P~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~gl~~i~dge~--~~~~~~~~~~~~~~~~ 75 (321)
T cd03310 1 LATGIGSYPLP---DGVTKEWSILEKGAIEPEWPEEALFTALGSFFELQLEAGVEVPTYGQL--GDDMIGRFLEVLVDLE 75 (321)
T ss_pred CCCcccCCCCc---hhHHHHHHHHhccccCchhHHHHHHHHHHHHHHHHHhhcCCcCCCccc--HHHHHhhHHHHHHHhh
Confidence 35777779999 999999999999999999999999999999999999999999999999 8999999887776554
Q ss_pred cccCCCCccccchhhhhccCCCCCCccccceecccCceeecceecCCCccccCCchhHHHHHHHHHcCCCCceEeehHHH
Q 003819 81 RYSWNGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHYIVPELGPDVNFSYASHKAVQEYKEAKALGMETVPVLVGPVS 160 (793)
Q Consensus 81 R~~~~~~~~~l~~yFa~arG~~~~~a~~mtKwFdtNYhY~vPe~~~~~~~~l~~~~~~~e~~~a~~~g~~~K~vl~GP~T 160 (793)
|| +|||+|||||++|++.++. +.......++++++++..+.++|++|+||+|
T Consensus 76 ~~---------------------------~~~~~~n~~y~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~vk~~l~GP~T 127 (321)
T cd03310 76 TG---------------------------TRFFDNNFFYRPPEAKIEA-FLPLELDYLEEVAEAYKEALKVKVVVTGPLT 127 (321)
T ss_pred cc---------------------------cccccccceeccchhcccc-cccccHHHHHHHHHhcCCCCceEEEecCHHh
Confidence 21 7999999999999998865 5444456677776666556789999999999
Q ss_pred HhhhccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEeeccccccCCC--hHHHHHHHHHHHHHHhccCCCcE
Q 003819 161 YLLLSKPAKGVEKSFSLLSLIDKIIPVYKEVVAELKAAGATWIQFDEPTLVLDLD--SHKLQAFSDAYSELQSSLSGLNV 238 (793)
Q Consensus 161 ~l~ls~~~~~~~~~~~~~~ll~~L~~~Y~~~l~~L~~aG~~~VQiDEP~L~~d~~--~~~~~~~~~~y~~l~~~~~~~~i 238 (793)
++.+++...++ ..+..+++++|+++|++++++|.++||.|||||||+|+.++. ..+.+.+.++|+.+..+. ...+
T Consensus 128 la~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~l~~~G~~~iqidEP~l~~~~~s~~~~~~~~~~~~~~~~~~~-~~~~ 204 (321)
T cd03310 128 LALLAFLPNGE--PDAYEDLAKSLAEFLREQVKELKNRGIVVVQIDEPSLGAVGAGAFEDLEIVDAALEEVSLKS-GGDV 204 (321)
T ss_pred HhHhhccccCC--chHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCCccccccccccchHHHHHHHHHHHhhcc-CCce
Confidence 99888753221 146789999999999999999999999999999999999875 567899999999987522 2346
Q ss_pred EEEeccCCCchhhHHHHhcCCCccEEEEEeccCC----CChhhHhh-hCCCCCEEEEEEeeC----CCCCCC--CHHHHH
Q 003819 239 LIETYFADVPAETYKILTSLKGVTGFGFDLIRGT----KTLDLIKT-EFPLGKYLFAGVVDG----RNIWAN--DLASSL 307 (793)
Q Consensus 239 ~l~tyfg~~~~~~~~~l~~lp~Vd~l~lD~~~~~----~~l~~l~~-~~p~~k~l~lGvVdg----rn~w~e--d~~~i~ 307 (793)
.+|+|++. +++.+.+++ ||+|++|++++. +++..+.+ ++ .++.+++|+||+ ||+|++ +++++.
T Consensus 205 ~lHic~~~----~~~~l~~~~-vd~l~~D~~~~~~~~~~~l~~~~~~g~-~~~~lg~gvid~~~~~~~~~~~~~~~~~~~ 278 (321)
T cd03310 205 EVHLCAPL----DYEALLELG-VDVIGFDAAALPSKYLEDLKKLLRIGV-RTLILGLVVTDNEAKGRNAWKEIERLEKLV 278 (321)
T ss_pred EEEECCCC----CHHHHHhCC-CCEEEEecccCcccchhHHHHHHhcCC-ceEEEEeeecCCcccCCCHHHHHHHHHHHH
Confidence 77888663 488999999 999999999864 67777654 23 678899999999 999998 666666
Q ss_pred HHHHHHhhhcCCCcEEEeCCCCCcccccccccccCCcHHHHhHHHHHHHHHHHHHHHHH
Q 003819 308 TTLQDLAGTVGKDKVVVSTSCSLLHTAVDLENETKLDQEIKSWLAFAAQKVVEVNALAK 366 (793)
Q Consensus 308 ~~i~~~~~~v~~e~l~vspsCgL~hvP~~~~~E~~l~~~~~~~lafA~qKl~El~~l~~ 366 (793)
++++.....+ .++++|+|||||.|+|++. |.+||+.|+.+++
T Consensus 279 ~~l~~~~~~~-~~~~~vtpscgL~~~p~~~----------------a~~kl~~l~~~a~ 320 (321)
T cd03310 279 RRLEEPGEVL-DEILYLTPDCGLAFLPPQE----------------ARRKLALLAEAAR 320 (321)
T ss_pred HHhccchhhh-hhceeeCCCccCCCCCHHH----------------HHHHHHHHHHHhh
Confidence 6666554333 3789999999999999983 9999999998875
No 26
>PRK06520 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=100.00 E-value=3.4e-46 Score=413.49 Aligned_cols=321 Identities=14% Similarity=0.191 Sum_probs=254.8
Q ss_pred eecccCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHcCCcccCCCCcccchhhhhhHhhhCCCCCcc
Q 003819 3 SHVVGYPRMGPKRELKFALESFWDGKSSADELQNVAADLRASIWNQMADAGIKFIPSNTFSYYDQVLDTTAMLGAVPPRY 82 (793)
Q Consensus 3 t~~lG~PRig~~reLK~A~e~yw~g~is~~eL~~~~~~~~~~~~~~Q~~aGld~ItdGefs~yD~vLD~~~~~g~ip~R~ 82 (793)
||+++|||+ ++|++|+++|-+|++|.++|+++.++++++.++.|+++|||+||||||++.+|++|+...++++ ++|
T Consensus 11 t~VGS~prP---~~L~~a~~~~~~g~i~~~~l~~~~~~ai~~~V~~Q~~aGldvitDGE~rR~~w~~df~~~l~Gv-~~~ 86 (368)
T PRK06520 11 DVVGSFLRP---AAIKQARQQFAAGEIDAAALRKIEDMEIRKVVEKQRACGLKVVTDGEFRRAWWHFDFFDGLQGV-ERY 86 (368)
T ss_pred ceeccCCCC---HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCccccceeeehhhhcCCe-eee
Confidence 566669999 9999999999999999999999999999999999999999999999998865556888888776 233
Q ss_pred cCCCCccccchhhhhccCCCCCCccccceecccCceeecceecCCCccccC-CchhHHHHHHHHHc--CCCCceEeehHH
Q 003819 83 SWNGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHYIVPELGPDVNFSYA-SHKAVQEYKEAKAL--GMETVPVLVGPV 159 (793)
Q Consensus 83 ~~~~~~~~l~~yFa~arG~~~~~a~~mtKwFdtNYhY~vPe~~~~~~~~l~-~~~~~~e~~~a~~~--g~~~K~vl~GP~ 159 (793)
.... ++ .++++|-.|..|.++|+ ++.. .++++++|++++++ +.++|.+||||+
T Consensus 87 ~~~~---------------------g~-~f~~~~~~~~~~~v~G~--I~~~~~~~~~~~~~~l~~~~~~~~~K~~ipgP~ 142 (368)
T PRK06520 87 EAEQ---------------------GI-QFNGVQTKARGVRVTGK--LDFPDDHPMLEDFRFLKSISGDATPKMTIPSPS 142 (368)
T ss_pred cccC---------------------ce-eecCcccccCCeEEEEE--ecCCCCCchHHHHHHHHhhccCCCCCEEcCcHH
Confidence 2110 11 12233444667899885 4443 47889999999987 456899999999
Q ss_pred HHhhh-----ccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEeeccccccCCChH----------H----HH
Q 003819 160 SYLLL-----SKPAKGVEKSFSLLSLIDKIIPVYKEVVAELKAAGATWIQFDEPTLVLDLDSH----------K----LQ 220 (793)
Q Consensus 160 T~l~l-----s~~~~~~~~~~~~~~ll~~L~~~Y~~~l~~L~~aG~~~VQiDEP~L~~d~~~~----------~----~~ 220 (793)
|++++ +.+ .+ |.+.++++.||+.+|++++++|+++||++||||||+|++.++.. + .+
T Consensus 143 ~l~~~~~~~~~~~--~~--Y~~~~~~~~dlA~al~~Ei~~L~~aG~~~IQiDep~l~~~~~~~~~~~~~~~~~~~~~l~~ 218 (368)
T PRK06520 143 VLHFRGGRKAIDA--TV--YPDLDDYFDDLAKTWRDAIKAFYDAGCRYLQLDDTVWAYLCSDDQRQQIRERGDDPDELAR 218 (368)
T ss_pred HHHhhccccccch--hc--CCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEecCcchhhccChhhhhhhhhccCCHHHHHH
Confidence 99854 222 22 56889999999999999999999999999999999998733211 2 34
Q ss_pred HHHHHHHHHHhccC-CCcEEEEeccCCCc---------hhhHHHHh-cCCCccEEEEEecc-CCCChhhHhhhCCC-CCE
Q 003819 221 AFSDAYSELQSSLS-GLNVLIETYFADVP---------AETYKILT-SLKGVTGFGFDLIR-GTKTLDLIKTEFPL-GKY 287 (793)
Q Consensus 221 ~~~~~y~~l~~~~~-~~~i~l~tyfg~~~---------~~~~~~l~-~lp~Vd~l~lD~~~-~~~~l~~l~~~~p~-~k~ 287 (793)
.+.++++...++.+ +..+.+|+|||++. +++++.|. +++ ||+++|||++ +.+.+++|.. ++. +|.
T Consensus 219 ~~~~~~n~~~~~~p~d~~v~~HiC~Gn~~~~~~~~~~y~~i~~~L~~~~~-vd~~~lE~~~~r~g~~e~L~~-l~~~~k~ 296 (368)
T PRK06520 219 IYARVLNKALAGKPADLTIGLHVCRGNFRSTWISEGGYEPVAETLFGGVN-VDAFFLEYDNERAGGFEPLRF-IPPGHQQ 296 (368)
T ss_pred HHHHHHHHHHhCCCCCcEEEEEeecCCCCCccccccchhHHHHHHHhhcC-CCeEEEEeccCCCCCcchHHH-hhhcCCE
Confidence 45577777776654 35677899999851 48899864 899 9999999986 4577887764 553 679
Q ss_pred EEEEEeeCCCCCCCCHHHHHHHHHHHhhhcCCCcEEEeCCCCCcccccccccccCCcHHHHhHHHHHHHHHHHHHHHHHH
Q 003819 288 LFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVSTSCSLLHTAVDLENETKLDQEIKSWLAFAAQKVVEVNALAKA 367 (793)
Q Consensus 288 l~lGvVdgrn~w~ed~~~i~~~i~~~~~~v~~e~l~vspsCgL~hvP~~~~~E~~l~~~~~~~lafA~qKl~El~~l~~~ 367 (793)
|++||||+||+.+|+++++++||+++++++|++||||||||||.+.--. ..|+.+ -|.+||+-|+.+|+.
T Consensus 297 v~lGvvd~~~~~vE~~e~I~~rI~~a~~~v~~~~l~lspdCGf~s~~~~----~~l~~~------~~~~KL~~l~~~a~~ 366 (368)
T PRK06520 297 VVLGLITTKNGELENADDVKARLAEAAKFVPLEQLCLSPQCGFASTEEG----NSLSEE------QQWAKLRLVVEIANE 366 (368)
T ss_pred EEeeEEeCCCCCCCCHHHHHHHHHHHHHhCCHHHEeeCcccCCCccccC----CCCCHH------HHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999932100 012222 599999999999864
No 27
>PRK06233 hypothetical protein; Provisional
Probab=100.00 E-value=2.5e-45 Score=407.41 Aligned_cols=323 Identities=18% Similarity=0.206 Sum_probs=254.8
Q ss_pred eecccCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHcCCcccCCCCcccchhhhhhHhhhCCCCCcc
Q 003819 3 SHVVGYPRMGPKRELKFALESFWDGKSSADELQNVAADLRASIWNQMADAGIKFIPSNTFSYYDQVLDTTAMLGAVPPRY 82 (793)
Q Consensus 3 t~~lG~PRig~~reLK~A~e~yw~g~is~~eL~~~~~~~~~~~~~~Q~~aGld~ItdGefs~yD~vLD~~~~~g~ip~R~ 82 (793)
+|+++|||+ ++|++|+++|-+|++|.++|+++.++.+++.++.|+++|||+||||||++.|+++|+...|+++- .+
T Consensus 12 ~~VGS~prP---~~L~~a~~~~~~g~i~~~~l~~~~~~ai~~~V~~Q~~aGldiitDGE~rR~~~~~~f~~~l~G~~-~~ 87 (372)
T PRK06233 12 DIVGSFLRP---ERLKEAREQFAIGEISQDQLLKIQHAEIKRLVKEQVELGLKAVTDGEFNRSWWHLDFLWGLNGVG-KY 87 (372)
T ss_pred ceEeeCCCC---HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCcCCccHHHHHHhhcCceE-ee
Confidence 456669999 99999999999999999999999999999999999999999999999999888999999999872 11
Q ss_pred cCCCCccccchhhhhccCCCCCCccccceecccCceeecceecCCCccccC-CchhHHHHHHHHHc---CCCCceEeehH
Q 003819 83 SWNGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHYIVPELGPDVNFSYA-SHKAVQEYKEAKAL---GMETVPVLVGP 158 (793)
Q Consensus 83 ~~~~~~~~l~~yFa~arG~~~~~a~~mtKwFdtNYhY~vPe~~~~~~~~l~-~~~~~~e~~~a~~~---g~~~K~vl~GP 158 (793)
... .++. ..| ..+ -|..|.++|. ++.+ .++++++|+++++. +.++|.+||||
T Consensus 88 ~~~-------~~~~-~~~-------~~~-------~~~~~~v~g~--i~~~~~~p~~~~~~~~~~~~~~~~~~K~tipgP 143 (372)
T PRK06233 88 EYE-------DSYK-FHG-------AKT-------RTDNAELAGK--VAFNPDHPFFAAFKYLKSIVPEGVLPKQTIPSP 143 (372)
T ss_pred cCc-------ceee-ecC-------CcC-------CCCCCEEEEe--eccCCCCchHHHHHHHHhhhcCCCceEEEecCc
Confidence 110 1111 011 000 1445888874 5543 47789999999987 35679999999
Q ss_pred HHHhhhccCC--CCcCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEeeccccccCCC------------hHHH---HH
Q 003819 159 VSYLLLSKPA--KGVEKSFSLLSLIDKIIPVYKEVVAELKAAGATWIQFDEPTLVLDLD------------SHKL---QA 221 (793)
Q Consensus 159 ~T~l~ls~~~--~~~~~~~~~~~ll~~L~~~Y~~~l~~L~~aG~~~VQiDEP~L~~d~~------------~~~~---~~ 221 (793)
+|++.++... +.+ |.+.++++.||+.+|++++++|+++||++||||||+|++... .+.. +.
T Consensus 144 ~~l~~~~~~~~~~~~--Y~~~eel~~dlA~a~~~Ei~~L~~aG~~~IQiDeP~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (372)
T PRK06233 144 SLLFRDNRSDNWPKF--YDSWDDYLDDLAQAYHDTIQHFYDLGARYIQLDDTTWAYLISKLNDTENDPKEHQKYVKLAED 221 (372)
T ss_pred HHhccCccccccccc--CCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEcCCCHHhhhccccccccchhhhhhHHHHHHH
Confidence 9998543221 222 568899999999999999999999999999999999876221 0112 33
Q ss_pred HHHHHHHHHhccC-CCcEEEEeccCCCc---------hhhHHHHhcCCCccEEEEEecc-CCCChhhHhhhCC---CCCE
Q 003819 222 FSDAYSELQSSLS-GLNVLIETYFADVP---------AETYKILTSLKGVTGFGFDLIR-GTKTLDLIKTEFP---LGKY 287 (793)
Q Consensus 222 ~~~~y~~l~~~~~-~~~i~l~tyfg~~~---------~~~~~~l~~lp~Vd~l~lD~~~-~~~~l~~l~~~~p---~~k~ 287 (793)
+.++++...++.+ ++.|.+|.|+|++. +++++.|.+++ ||+|+|||++ ..++|++|.. ++ .+|.
T Consensus 222 ~~~~~N~~~~~~p~d~~i~~H~C~Gn~~~~~~~~g~y~~i~~~l~~~~-vd~~~lE~~~~r~~~~~~L~~-~~~~~~~k~ 299 (372)
T PRK06233 222 AVYVINKALADLPEDLTVTTHICRGNFKSTYLFSGGYEPVAKYLGQLN-YDGFFLEYDNDRSGSFEPLKQ-IWNNRDNVR 299 (372)
T ss_pred HHHHHHHHHhCCCcCCEEEEEeeCCCCCCcccccCcHHHHHHHHHhCC-CCEEEEecCCCccCccchHHH-hhccCCCCE
Confidence 4446777666654 45788899998761 48899999999 9999999986 4588998886 43 3789
Q ss_pred EEEEEeeCCCCCCCCHHHHHHHHHHHhhhcCCCcEEEeCCCCCcccccccccccCCcHHHHhHHHHHHHHHHHHHHHHHH
Q 003819 288 LFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVSTSCSLLHTAVDLENETKLDQEIKSWLAFAAQKVVEVNALAKA 367 (793)
Q Consensus 288 l~lGvVdgrn~w~ed~~~i~~~i~~~~~~v~~e~l~vspsCgL~hvP~~~~~E~~l~~~~~~~lafA~qKl~El~~l~~~ 367 (793)
|++||||+||+.+|+++++++||+++++++|++||||||||||...-- =..|+++ -|.+||+-|+.+++.
T Consensus 300 v~lGvid~~~~~vE~~e~I~~rI~~a~~~v~~e~l~lspdCGf~s~~~----g~~l~~~------~~~~KL~~l~~~a~~ 369 (372)
T PRK06233 300 IVLGLITSKFPELEDEDEIIARIDEATEYVPLSNLALSTQCGFASTEE----GNILTEA------DQWAKLALVKKIADK 369 (372)
T ss_pred EEeeeecCCCCCCCCHHHHHHHHHHHHHhCCHHHEEecCCCCCccccc----cCCCCHH------HHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999993210 0124444 599999999998864
No 28
>cd03311 CIMS_C_terminal_like CIMS - Cobalamine-independent methonine synthase, or MetE, C-terminal domain_like. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers the C-terminal barrel, and a few single-barrel sequences most similar to the C-terminal barrel. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Sidechains from
Probab=100.00 E-value=2.6e-44 Score=394.97 Aligned_cols=314 Identities=22% Similarity=0.208 Sum_probs=258.2
Q ss_pred ceecccCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHcCCcccCCCCcccchhhhhhHhhhCCCCCc
Q 003819 2 ASHVVGYPRMGPKRELKFALESFWDGKSSADELQNVAADLRASIWNQMADAGIKFIPSNTFSYYDQVLDTTAMLGAVPPR 81 (793)
Q Consensus 2 ~t~~lG~PRig~~reLK~A~e~yw~g~is~~eL~~~~~~~~~~~~~~Q~~aGld~ItdGefs~yD~vLD~~~~~g~ip~R 81 (793)
+||+++|||+ ++|++|+++|.+|+++.++|+++.++++++.++.|+++|||+||||||+|.|++.++...++++-.
T Consensus 2 tt~vGS~prp---~~l~~a~~~~~~g~~~~~~l~~~~~~ai~~~v~~Q~~~GldiitDGe~~r~~~~~~f~~~l~G~~~- 77 (332)
T cd03311 2 TTTVGSFPRP---KELREARAKFKKGEISAEELREAEDDAIADAVKDQEEAGLDVVTDGEFRRSDMVEYFLERLDGFEF- 77 (332)
T ss_pred CceecCCCCC---HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHhCCCccccCCcccccHHHHHHHhCCceee-
Confidence 5777779999 999999999999999999999999999999999999999999999999999999999887777610
Q ss_pred ccCCCCccccchhhhhccCCCCCCccccceecccCceeecceecCCCccccCCchhHHHHHHHHHcC--CCCceEeehHH
Q 003819 82 YSWNGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHYIVPELGPDVNFSYASHKAVQEYKEAKALG--METVPVLVGPV 159 (793)
Q Consensus 82 ~~~~~~~~~l~~yFa~arG~~~~~a~~mtKwFdtNYhY~vPe~~~~~~~~l~~~~~~~e~~~a~~~g--~~~K~vl~GP~ 159 (793)
.+..+.+ .|..|..|.+.++ +....+..+.+++.+++.. ..+|++++||+
T Consensus 78 -------------------------~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~lk~~l~GP~ 129 (332)
T cd03311 78 -------------------------TGWVQSY-GSRYYKPPGIVGD--VSRRPPMTVEEGKIAQSLTHPKPLKGILTGPV 129 (332)
T ss_pred -------------------------ccceeee-ccceeeCCeeecc--cccCCCCeEEEEEEeccCCCCccccccCCCCe
Confidence 0112334 3344667777653 2222344455555555442 57899999999
Q ss_pred HHhhhccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEeeccccccCCCh----HHHHHHHHHHHHHHhccCC
Q 003819 160 SYLLLSKPAKGVEKSFSLLSLIDKIIPVYKEVVAELKAAGATWIQFDEPTLVLDLDS----HKLQAFSDAYSELQSSLSG 235 (793)
Q Consensus 160 T~l~ls~~~~~~~~~~~~~~ll~~L~~~Y~~~l~~L~~aG~~~VQiDEP~L~~d~~~----~~~~~~~~~y~~l~~~~~~ 235 (793)
|++.++...... .|.+..+++++|+++|++++++|+++||++||||||+|+..++. ...+.+..+++.+.+...+
T Consensus 130 Tla~~~~~~~~~-~y~~~~el~~~la~~~~~e~~~l~~aG~~~iQiDEP~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 208 (332)
T cd03311 130 TIPSPSFVRFRG-YYPSREELAMDLALALREEIRDLYDAGCRYIQIDEPALAEGLPLEPDDLAADYLKWANEALADRPDD 208 (332)
T ss_pred eECCchhhcccc-cCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEeecchhhccCCcccHHHHHHHHHHHHHHHHhCCCC
Confidence 998877642110 13578899999999999999999999999999999999987654 4567777888888763224
Q ss_pred CcEEEEeccCCCc---------hhhHHHHhcCCCccEEEEEeccC-CCChhhHhhhCCCCCEEEEEEeeCCCCCCCCHHH
Q 003819 236 LNVLIETYFADVP---------AETYKILTSLKGVTGFGFDLIRG-TKTLDLIKTEFPLGKYLFAGVVDGRNIWANDLAS 305 (793)
Q Consensus 236 ~~i~l~tyfg~~~---------~~~~~~l~~lp~Vd~l~lD~~~~-~~~l~~l~~~~p~~k~l~lGvVdgrn~w~ed~~~ 305 (793)
.++.+|+|||+.. .++++.|.+++ ||+|+||+++. .++++++.. ++.+|.|++||||++|+++|++++
T Consensus 209 ~~v~lHiC~G~~~~~~~~~~~y~~i~~~l~~~~-vd~~~le~~~~~~~~~~~l~~-~~~~k~l~~GvVd~~~~~~e~~e~ 286 (332)
T cd03311 209 TQIHTHICYGNFRSTWAAEGGYEPIAEYIFELD-VDVFFLEYDNSRAGGLEPLKE-LPYDKKVGLGVVDVKSPEVESPEE 286 (332)
T ss_pred CEEEEEEECCCCcccccccCcHHHHHHHHHhCC-CCEEEEEEcCCCCcchHHHHh-CCCCCEEEeeeecCCCCCCCCHHH
Confidence 6889999999762 46789999999 99999999974 578999986 777999999999999999999999
Q ss_pred HHHHHHHHhhhcCCCcEEEeCCCCCcccccccccccCCcHHHHhHHHHHHHHHHHHHHHHH
Q 003819 306 SLTTLQDLAGTVGKDKVVVSTSCSLLHTAVDLENETKLDQEIKSWLAFAAQKVVEVNALAK 366 (793)
Q Consensus 306 i~~~i~~~~~~v~~e~l~vspsCgL~hvP~~~~~E~~l~~~~~~~lafA~qKl~El~~l~~ 366 (793)
++++|+++.++++.++++|||||||.++|.. .|.+||+.|+.+++
T Consensus 287 v~~ri~~~~~~~~~~~l~lsp~CGl~~~~~~----------------~a~~kl~~~~~~~~ 331 (332)
T cd03311 287 VKDRIEEAAKYVPLEQLWVSPDCGFATRERG----------------NALTKLENMVKAAL 331 (332)
T ss_pred HHHHHHHHHhhCCHHHEEECCCCCCCcCCCc----------------hhHHHHHHHHHHhh
Confidence 9999999999999899999999999999986 49999999988864
No 29
>COG0620 MetE Methionine synthase II (cobalamin-independent) [Amino acid transport and metabolism]
Probab=100.00 E-value=2.2e-43 Score=383.24 Aligned_cols=315 Identities=20% Similarity=0.263 Sum_probs=275.2
Q ss_pred ceecccCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHcCCcccCCCCcccchhhhhhHhhhCCCCCc
Q 003819 2 ASHVVGYPRMGPKRELKFALESFWDGKSSADELQNVAADLRASIWNQMADAGIKFIPSNTFSYYDQVLDTTAMLGAVPPR 81 (793)
Q Consensus 2 ~t~~lG~PRig~~reLK~A~e~yw~g~is~~eL~~~~~~~~~~~~~~Q~~aGld~ItdGefs~yD~vLD~~~~~g~ip~R 81 (793)
+|++++|||+ .+|++|+++|-+|+++.+++.+..++.+.+.++.|+++|||++++|+|.|+|+|-+++..++++-
T Consensus 7 tt~iGSfPr~---~~l~~a~~~~~~G~i~~ee~~~~~~~~i~~~i~~q~~~Gldv~v~Ge~~r~Dmv~~F~e~l~G~~-- 81 (330)
T COG0620 7 TTVIGSFPRP---EELRKAREKWKKGEISEEEYEEILREAIRRAIKDQEEAGLDVLVDGEFERNDMVEYFAEKLDGVK-- 81 (330)
T ss_pred ccccCCCCCC---hhHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEecCCceeecHHHHHHHHHcCCee--
Confidence 3566669999 99999999999999999999999999999999999999999999999999999988877766651
Q ss_pred ccCCCCccccchhhhhccCCCCCCccccceecccCceeecceecCCCccccCCchhHHHHHHHHHc-CCCCceEeehHHH
Q 003819 82 YSWNGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHYIVPELGPDVNFSYASHKAVQEYKEAKAL-GMETVPVLVGPVS 160 (793)
Q Consensus 82 ~~~~~~~~~l~~yFa~arG~~~~~a~~mtKwFdtNYhY~vPe~~~~~~~~l~~~~~~~e~~~a~~~-g~~~K~vl~GP~T 160 (793)
| ...++.+.|++ ..|+.|++.|+ +++..+.+++++.+|+++ ..++|.+||||+|
T Consensus 82 ~----------------------~~~~~v~~~~~-~~~r~p~i~g~--v~~~~~~~v~~~~~a~~~~~~~~K~~ltGP~t 136 (330)
T COG0620 82 F----------------------TQNGWVRSYGS-RCYRPPIIIGD--VSRPEPMTVEEFLYAQSLTEKPVKGMLTGPVT 136 (330)
T ss_pred e----------------------ccCCcEEEecc-EEeeCceEecc--cccCCCCcchhhhhhhhccCccceeeeccHHh
Confidence 1 13466777887 88999999995 555678999999999986 4788999999999
Q ss_pred HhhhccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEeeccccccCCCh----HHHHHHHHHHHHHHhcc-CC
Q 003819 161 YLLLSKPAKGVEKSFSLLSLIDKIIPVYKEVVAELKAAGATWIQFDEPTLVLDLDS----HKLQAFSDAYSELQSSL-SG 235 (793)
Q Consensus 161 ~l~ls~~~~~~~~~~~~~~ll~~L~~~Y~~~l~~L~~aG~~~VQiDEP~L~~d~~~----~~~~~~~~~y~~l~~~~-~~ 235 (793)
++.+|... . +.++.++..+++.+|++++++|.++||++||||||+|...++. +.++.+..+++...++. ++
T Consensus 137 i~~~s~~~-~---~~~~~el~~~iA~al~~ev~~l~~agi~~iQiDEpal~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d 212 (330)
T COG0620 137 ILLWSFNR-Y---YISREELAKDIALALRDEVKDLEDAGIKIIQIDEPALREGLPLRRDDDYLEWAVEAINLAAAGVGAD 212 (330)
T ss_pred hHhhhccc-c---CCCHHHHHHHHHHHHHHHHHHHHHcCCCEEeechhhhhcCCccccchHHHHHHHHHHHHHHhcCCCC
Confidence 99999853 2 3588999999999999999999999999999999999986542 35677777777776653 35
Q ss_pred CcEEEEeccCCCchhhHHHHhcCCCccEEEEEecc-CCCChhhHhhhCCCCCEEEEEEeeCCCCCCCCHHHHHHHHHHHh
Q 003819 236 LNVLIETYFADVPAETYKILTSLKGVTGFGFDLIR-GTKTLDLIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLA 314 (793)
Q Consensus 236 ~~i~l~tyfg~~~~~~~~~l~~lp~Vd~l~lD~~~-~~~~l~~l~~~~p~~k~l~lGvVdgrn~w~ed~~~i~~~i~~~~ 314 (793)
.+|++|.||+++ ..+.+.+.+++ +|++.+++.+ +.+.++.+.. +..++.+++||||.|++.+|+.+++.++|++++
T Consensus 213 ~~i~~HiCy~e~-~~~~~~i~~ld-~dv~~~e~~~s~~~~~~~~~~-~~~~~~Ig~Gv~d~~~~~ve~~eei~~~i~k~~ 289 (330)
T COG0620 213 TQIHLHICYSEF-NDIPDAIEALD-ADVIDIETSRSRMELLEVLEE-VKYDKEIGLGVVDIHSPKVESVEEIAARIRKAL 289 (330)
T ss_pred cEEEEEEECCcc-cchhHHHhhcC-CcEEeeeccccccchhHHHHh-ccCCCeeecceEecCCCCcCCHHHHHHHHHHHH
Confidence 799999999988 78889999999 9999999998 5567887775 557889999999999999999999999999999
Q ss_pred hhcCCCcEEEeCCCCCcccccccccccCCcHHHHhHHHHHHHHHHHHHHHHHHcc
Q 003819 315 GTVGKDKVVVSTSCSLLHTAVDLENETKLDQEIKSWLAFAAQKVVEVNALAKALS 369 (793)
Q Consensus 315 ~~v~~e~l~vspsCgL~hvP~~~~~E~~l~~~~~~~lafA~qKl~El~~l~~~l~ 369 (793)
+.+|++++||+|||||..+|.. -|.+||..|+.+++.++
T Consensus 290 ~~~~~e~~~vnPDCGl~~~~~~----------------~a~~kL~nmv~a~~~~r 328 (330)
T COG0620 290 ERVPPERLYVNPDCGLKTLPRE----------------IAEAKLENMVKAAKEIR 328 (330)
T ss_pred HhCChheEEEcCCCCcccCcHH----------------HHHHHHHHHHHHHHHHh
Confidence 9999999999999999999966 39999999999988764
No 30
>cd03310 CIMS_like CIMS - Cobalamine-independent methonine synthase, or MetE. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers both the N-and C-terminal barrel, and some single-barrel sequences, mostly from Archaea. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Side chains from both barrels contribute to the binding o
Probab=100.00 E-value=9.5e-44 Score=388.50 Aligned_cols=305 Identities=21% Similarity=0.250 Sum_probs=246.8
Q ss_pred ccccccCCCcHHHHHHHHHHHccchhhHHHHHHhhccccceeeeehhhhcccCCHHHHHHHHHHHHHHHHHHHHHcCCCc
Q 003819 434 TTTIGSFPQTMDLRRVRREFKAKKRVLLLFHILLLNFHHFQIVFHKLVFYFRISEDDYVKTIKEEINNVVKLQEELDIDV 513 (793)
Q Consensus 434 tt~iGSfPr~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~i~~Q~~~Gldv 513 (793)
||+|||||||.+++++++.||+|+ ++.+++++..++++.++|+.|+++|+|+
T Consensus 2 ~t~vGS~P~~~~~~~a~~~~~~~~----------------------------~~~~~~~~~~~~~~~~~~~~q~~~gl~~ 53 (321)
T cd03310 2 ATGIGSYPLPDGVTKEWSILEKGA----------------------------IEPEWPEEALFTALGSFFELQLEAGVEV 53 (321)
T ss_pred CCcccCCCCchhHHHHHHHHhccc----------------------------cCchhHHHHHHHHHHHHHHHHHhhcCCc
Confidence 799999999999999999999999 9999999999999999999999999999
Q ss_pred ccCCCCccchhHHHHHhhccCceeeccceeeecCCcc-ccCcEEEccC-CCCCCcchhHHHHHHhcCCCCceeeechHHH
Q 003819 514 LVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRC-VKPPIIYGDV-SRPKAMTVFWSSMAQSMTKRPMKGMLTGPVT 591 (793)
Q Consensus 514 i~~Ge~~r~d~v~~f~e~l~G~~~~~~g~v~~~~~~~-~~~P~i~g~v-~~~~~~~~~~~~~aq~~t~kpvK~~LtGPvT 591 (793)
++|||| |.||+.+|.+.+.|+... ++||+++| |++|++.|++ ..+....+++++.+.+. ..|+|++++||+|
T Consensus 54 i~dge~-~~~~~~~~~~~~~~~~~~----~~~~~~n~~y~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~vk~~l~GP~T 127 (321)
T cd03310 54 PTYGQL-GDDMIGRFLEVLVDLETG----TRFFDNNFFYRPPEAKIEAFLPLELDYLEEVAEAYKE-ALKVKVVVTGPLT 127 (321)
T ss_pred CCCccc-HHHHHhhHHHHHHHhhcc----cccccccceeccchhcccccccccHHHHHHHHHhcCC-CCceEEEecCHHh
Confidence 999999 999999999999998642 78899876 8999999987 33333344455444433 2689999999999
Q ss_pred HhhcccccCC--CChHHHHHHHHHHHHHHHHHHHHcCCcEEEEcCcccccCCCCCcccHHHHHHHHHHHHHHHhcCCCCC
Q 003819 592 ILNWSFVRND--QPRFETCYQIALAIKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDT 669 (793)
Q Consensus 592 ll~~s~~~~~--~~~~e~~~~lA~al~~ev~~L~~aGv~~IQIDEPal~~~l~l~~~~~~~~l~~av~a~~~~~~~v~~~ 669 (793)
++.+++..++ ....++++++++++++++++|.++|+.+||||||++...+... . ...+.+.++++.+..+..
T Consensus 128 la~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~G~~~iqidEP~l~~~~~s~-~---~~~~~~~~~~~~~~~~~~-- 201 (321)
T cd03310 128 LALLAFLPNGEPDAYEDLAKSLAEFLREQVKELKNRGIVVVQIDEPSLGAVGAGA-F---EDLEIVDAALEEVSLKSG-- 201 (321)
T ss_pred HhHhhccccCCchHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCCccccccccc-c---chHHHHHHHHHHHhhccC--
Confidence 9999997766 5688999999999999999999999999999999999765311 1 122334445554433222
Q ss_pred CeEEEEeCCCCchhHHHHHHcCCCcEEEEecCCCC---hhhHHHhhhccc-CCCeEeeeeecC----CCCCCC--CHHHH
Q 003819 670 TQVHTHMCYSNFNDIIHSIMDMDADVITIENSRSD---EKLLSVFREGVK-YRAGIGPGVYDI----HSPRIP--STEEI 739 (793)
Q Consensus 670 ~~I~lH~C~g~~~~i~~~l~~l~~D~isiE~~r~~---~~~L~~~~~~~~-~~~~i~~GVvD~----~s~~ve--s~eev 739 (793)
..+++|+|++ .+++.+.++++|+|++|+.+.. .+.+..|.+ .+ ..+.+|+|++|+ +|+|.+ +++++
T Consensus 202 ~~~~lHic~~---~~~~~l~~~~vd~l~~D~~~~~~~~~~~l~~~~~-~g~~~~~lg~gvid~~~~~~~~~~~~~~~~~~ 277 (321)
T cd03310 202 GDVEVHLCAP---LDYEALLELGVDVIGFDAAALPSKYLEDLKKLLR-IGVRTLILGLVVTDNEAKGRNAWKEIERLEKL 277 (321)
T ss_pred CceEEEECCC---CCHHHHHhCCCCEEEEecccCcccchhHHHHHHh-cCCceEEEEeeecCCcccCCCHHHHHHHHHHH
Confidence 2478999976 5799999999999999987754 356777765 34 456799999999 999987 44444
Q ss_pred HHHHHHHHhhcCCCcEEEcCCCCCCCCChhHHHHHHHHHHHHHH
Q 003819 740 ADRINKMLAVLESNILWVNPDCGLKTRKYSEVKPALSNMVAAAK 783 (793)
Q Consensus 740 ~~~i~~al~~i~~~~l~vsPdCGL~t~~~~~~~~kL~~mv~aa~ 783 (793)
.++++.....+ .+++||+|||||.+++++.+++||++|+++++
T Consensus 278 ~~~l~~~~~~~-~~~~~vtpscgL~~~p~~~a~~kl~~l~~~a~ 320 (321)
T cd03310 278 VRRLEEPGEVL-DEILYLTPDCGLAFLPPQEARRKLALLAEAAR 320 (321)
T ss_pred HHHhccchhhh-hhceeeCCCccCCCCCHHHHHHHHHHHHHHhh
Confidence 44443332222 38899999999999999999999999999986
No 31
>PRK01207 methionine synthase; Provisional
Probab=100.00 E-value=9.1e-42 Score=369.81 Aligned_cols=306 Identities=14% Similarity=0.191 Sum_probs=252.6
Q ss_pred ceeccc-CCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHcCCccc-CCCCcccchhhhhhHhhhCCCC
Q 003819 2 ASHVVG-YPRMGPKRELKFALESFWDGKSSADELQNVAADLRASIWNQMADAGIKFI-PSNTFSYYDQVLDTTAMLGAVP 79 (793)
Q Consensus 2 ~t~~lG-~PRig~~reLK~A~e~yw~g~is~~eL~~~~~~~~~~~~~~Q~~aGld~I-tdGefs~yD~vLD~~~~~g~ip 79 (793)
.||++| ||++ +++.++. ++++. .+++.+...+.++..++.|+++|||+| +||++.+.| |.++
T Consensus 5 ~TT~iGS~P~p---~~~~~~~---~~~~~-~~~~~e~~~~ai~~~v~~Qe~aGlDiv~~dGe~~R~d-mv~~-------- 68 (343)
T PRK01207 5 ITQEIGSFRKP---EYLSREF---HKIEG-TDKFYELAERATLETLDVFENAGLDNIGIGGEMFRWE-MYEH-------- 68 (343)
T ss_pred cccccCCCCCC---HHHHHHH---hccCC-CHHHHHHHHHHHHHHHHHHHHcCCCEEeeCCcEeech-HHHH--------
Confidence 355555 9999 7766665 56665 577777777799999999999999999 799998877 4322
Q ss_pred CcccCCCCccccchhhhhc-cCCCCCCccccceecccCceeecceecCCCccccCCchhHHHHHHHHHc-CCCCceEeeh
Q 003819 80 PRYSWNGGEIGFDVYFSMA-RGNASVPAMEMTKWFDTNYHYIVPELGPDVNFSYASHKAVQEYKEAKAL-GMETVPVLVG 157 (793)
Q Consensus 80 ~R~~~~~~~~~l~~yFa~a-rG~~~~~a~~mtKwFdtNYhY~vPe~~~~~~~~l~~~~~~~e~~~a~~~-g~~~K~vl~G 157 (793)
|+.. .|. ...++.+.|+++ +|..|.+.|+ ++...+..++++++|+++ ..++|.+|||
T Consensus 69 ---------------f~~~l~G~---~~~g~vr~y~~~-~~r~Pii~g~--i~~~~~~~v~e~~~a~~~t~kpvK~~ltG 127 (343)
T PRK01207 69 ---------------PAERIKGI---IFYGMVRSFDNR-YYRKGSIIDR--MERRSSFHLDEVEFVADNTKKPIKVPITG 127 (343)
T ss_pred ---------------HHHhcCCe---EecCeEEEeccc-cccCCeEEee--ccCCCCCcHHHHHHHHHccCCCcEEEecC
Confidence 2221 232 124667889975 4999999985 555678899999999998 5678999999
Q ss_pred HHHHhhhccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHC------CCC-EEEeeccccccCCChHHHHHHHHHHHHHH
Q 003819 158 PVSYLLLSKPAKGVEKSFSLLSLIDKIIPVYKEVVAELKAA------GAT-WIQFDEPTLVLDLDSHKLQAFSDAYSELQ 230 (793)
Q Consensus 158 P~T~l~ls~~~~~~~~~~~~~~ll~~L~~~Y~~~l~~L~~a------G~~-~VQiDEP~L~~d~~~~~~~~~~~~y~~l~ 230 (793)
|+|++.||.+. . |.++.+++.+++.+.++++++|.++ ||. +||||||+|... .++++.+.++++...
T Consensus 128 P~Ti~~~S~~~-~---Y~~~~el~~~iA~al~~Ev~~L~~a~~~~~~G~~~~IQiDEPal~~~--~~~l~~av~a~n~~~ 201 (343)
T PRK01207 128 PYTMMDWSFND-F---YRDRYDLAMEFARIINEELKDIKSAWDRKSPGRKLEIQIDEPATTTH--PDEMDIVVDSINKSV 201 (343)
T ss_pred HHHHHHHhccc-c---cCCHHHHHHHHHHHHHHHHHHHHhhhcccccCCceEEEEeCCCcCCC--hHHHHHHHHHHHHHH
Confidence 99999999852 2 4689999999999999999999999 998 699999999864 356777778888888
Q ss_pred hccCCCcEEEEeccC-CCchhhHHHHhcCCCccEEEEEeccCC--------------CChhhHhh---hCCCCCEEEEEE
Q 003819 231 SSLSGLNVLIETYFA-DVPAETYKILTSLKGVTGFGFDLIRGT--------------KTLDLIKT---EFPLGKYLFAGV 292 (793)
Q Consensus 231 ~~~~~~~i~l~tyfg-~~~~~~~~~l~~lp~Vd~l~lD~~~~~--------------~~l~~l~~---~~p~~k~l~lGv 292 (793)
++++ .++++|+||| ++ .++++.|.+++ ||.|++|++++. .+|+.+.. .++.++.|++||
T Consensus 202 ~gv~-~~i~~H~C~g~~~-~~i~~~i~~~~-~d~~~~E~a~~~~~~~~~~~~~r~~~~~l~~~~~~~~~l~~~~~Ig~GV 278 (343)
T PRK01207 202 YGID-NEFSIHVCYSSDY-RLLYDRIPELN-IDGYNLEYSNRDTLEPGTSDEKRPGFQDLKYFAEHNESLQRKKFIGLGV 278 (343)
T ss_pred hCCC-CcEEEEEEcCCCh-HHHHHHHHhCC-CCEEEEEeccCcccccccccccccchhHHHHHHhhccccCCCCeEEeeE
Confidence 7764 4799999999 79 99999999999 999999999532 35666643 244667899999
Q ss_pred eeCCCCCCCCHHHHHHHHHHHhhhc-CCCcEEEeCCCCCcccccccccccCCcHHHHhHHHHHHHHHHHHHHHHHHcc
Q 003819 293 VDGRNIWANDLASSLTTLQDLAGTV-GKDKVVVSTSCSLLHTAVDLENETKLDQEIKSWLAFAAQKVVEVNALAKALS 369 (793)
Q Consensus 293 Vdgrn~w~ed~~~i~~~i~~~~~~v-~~e~l~vspsCgL~hvP~~~~~E~~l~~~~~~~lafA~qKl~El~~l~~~l~ 369 (793)
+|.||+.+|+++++.++|+++++++ |+++|||+|||||...|++ -|.+||+.|+..++.++
T Consensus 279 ~D~~s~~vEs~e~I~~ri~~~l~~v~~~e~l~vnpDCGl~t~~~~----------------~a~~KL~~mv~aa~~~r 340 (343)
T PRK01207 279 TDVHIDYVEPVKLIEDRIRYALKIIKDPELVRLNPDCGLRTRSRE----------------IGEQKLRNMVAAKNNIL 340 (343)
T ss_pred EeCCCCCCCCHHHHHHHHHHHHHhcCCcceEEEcCCCCCCcCCHH----------------HHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999 7999999999999999876 49999999999987764
No 32
>PF01717 Meth_synt_2: Cobalamin-independent synthase, Catalytic domain; InterPro: IPR002629 This is a domain of vitamin-B12 independent methionine synthases or 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferases, 2.1.1.14 from EC from bacteria and plants. Plants are the only higher eukaryotes that have the required enzymes for methionine synthesis []. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to homocysteine []. The aligned region makes up the carboxy region of the approximately 750 amino acid protein except in some hypothetical archaeal proteins present in the family, where this region corresponds to the entire length.; GO: 0003871 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity, 0009086 methionine biosynthetic process; PDB: 1U22_A 1U1H_A 1U1U_A 1U1J_A 3BQ5_A 3BQ6_A 1XDJ_B 1XR2_B 1T7L_B 1XPG_B ....
Probab=100.00 E-value=1.7e-41 Score=371.54 Aligned_cols=311 Identities=22% Similarity=0.275 Sum_probs=236.3
Q ss_pred ceecccCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHcCCcccCCCCcccchhhhhhHhhhCCCCCc
Q 003819 2 ASHVVGYPRMGPKRELKFALESFWDGKSSADELQNVAADLRASIWNQMADAGIKFIPSNTFSYYDQVLDTTAMLGAVPPR 81 (793)
Q Consensus 2 ~t~~lG~PRig~~reLK~A~e~yw~g~is~~eL~~~~~~~~~~~~~~Q~~aGld~ItdGefs~yD~vLD~~~~~g~ip~R 81 (793)
+|+|++|||+ ++|++|+++|-+|+++.++|.+++++++++.++.|+++|||+||||||++-|++.++...+.++ .
T Consensus 3 TT~VGS~prp---~~l~~a~~~~~~g~~~~~~l~~~~~~ai~~~V~~Q~~~GldvitDGE~~R~~~~~~f~~~l~G~--~ 77 (324)
T PF01717_consen 3 TTVVGSFPRP---EELKEAREAFAKGEISPEELEEIEDEAIADAVKRQEDAGLDVITDGEFRRGDFHSYFAERLDGF--G 77 (324)
T ss_dssp BB-SSB---S---HHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHHHHHHT-SCBE-BTTT-SSTTHHHHTTSEEE--E
T ss_pred CcccCCCCCC---HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceecceeccCchhhhhhhhccCc--e
Confidence 4555669999 9999999999999999999999999999999999999999999999999988999887666554 1
Q ss_pred ccCCCCccccchhhhhccCCCCCCccccceecccCceeecceecCCCccccCCchhHHHHHHHHHc-CCCCceEeehHHH
Q 003819 82 YSWNGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHYIVPELGPDVNFSYASHKAVQEYKEAKAL-GMETVPVLVGPVS 160 (793)
Q Consensus 82 ~~~~~~~~~l~~yFa~arG~~~~~a~~mtKwFdtNYhY~vPe~~~~~~~~l~~~~~~~e~~~a~~~-g~~~K~vl~GP~T 160 (793)
+.. .+ .+ .-|.+ .++..|.+.+ ++....+..++++.+++.. +.++|.+++||+|
T Consensus 78 ~~~--------------~~-------~~-~~~~~-~~~~~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~vK~~i~gP~t 132 (324)
T PF01717_consen 78 DTL--------------NG-------DV-QSFGE-RYYRPPIVVG--KISRKKPFAVEEFKYAQSLTDKPVKGTITGPST 132 (324)
T ss_dssp EES--------------SE-------EE-EEETT-EEEEEEEEEE--EEEESS-SSHHHHHHHHHT-SSSBEEEEE-HHH
T ss_pred eec--------------cc-------cc-eeccc-ccccceEEec--ccccCCcchhHHHHHHHhccccccccccCHHHH
Confidence 110 00 11 11222 2356677776 3555677888999988877 4457999999999
Q ss_pred HhhhccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEeeccccccCCChHH---HHHH-----HHHHHHHHhc
Q 003819 161 YLLLSKPAKGVEKSFSLLSLIDKIIPVYKEVVAELKAAGATWIQFDEPTLVLDLDSHK---LQAF-----SDAYSELQSS 232 (793)
Q Consensus 161 ~l~ls~~~~~~~~~~~~~~ll~~L~~~Y~~~l~~L~~aG~~~VQiDEP~L~~d~~~~~---~~~~-----~~~y~~l~~~ 232 (793)
++..+... . |.+..+++.+|+.+|++++++|+++||++||||||+|....+... ...+ ..+.+.....
T Consensus 133 l~~~~~~~-~---y~~~~~~~~dla~a~~~ei~~l~~~G~~~iQiDeP~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 208 (324)
T PF01717_consen 133 LADPSANR-Y---YKDREELLEDLAEAYREEIRALYDAGCRYIQIDEPALSEGPPDASFDRDEYLDEAVAAEALNRAVKG 208 (324)
T ss_dssp HHHTSEES-S---SS-HHHHHHHHHHHHHHHHHHHHHTT-SEEEEEETCHHCTSCSSHHHHHHHHHHHHHHHHHHHTTST
T ss_pred hhchhccc-c---CCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEecchHhhcchhhhcccHHHHHHHHHHHHHHHhccCC
Confidence 98877642 2 458899999999999999999999999999999999876544321 1111 1222222222
Q ss_pred cCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEEeccCC-CChhhHhhhCCCCCEEEEEEeeCCCCCCCCHHHHHHHHH
Q 003819 233 LSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLIRGT-KTLDLIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQ 311 (793)
Q Consensus 233 ~~~~~i~l~tyfg~~~~~~~~~l~~lp~Vd~l~lD~~~~~-~~l~~l~~~~p~~k~l~lGvVdgrn~w~ed~~~i~~~i~ 311 (793)
.+..+.+|+|+|++ ...++.|.+++ ||+++|||++.. ++|++|.+ ++.+|.|++||||+++..+|++++++++|+
T Consensus 209 -~~~~v~~H~C~~~~-~~~~~~l~~~~-vd~~~lE~~~~~~~~l~~l~~-~~~~k~v~lGvv~~~~~~vE~~e~v~~ri~ 284 (324)
T PF01717_consen 209 -EDATVGVHVCRGNY-PSILPLLADLN-VDAFFLEFADRRAGDLEPLRE-LPSGKKVVLGVVDTKSPEVESPEEVADRIE 284 (324)
T ss_dssp -TTSEEEEEESSSCH-CTTHHHHHCSS--SEEEEEETSSTTGGGHHCHC-TTTTSEEEEEES-TTSSS--THHHHHHHHH
T ss_pred -CCCEEEEEecCccc-hhhHHHHhhcc-cceEEeecccCCcccHHHHHh-CcCCceEEEEEEcCCCCCcCCHHHHHHHHH
Confidence 24688999999988 66678999999 999999999854 89999997 899999999999999999999999999999
Q ss_pred HHhhhcCCCcEEEeCCCCCcccccccccccCCcHHHHhHHHHHHHHHHHHHHHHH
Q 003819 312 DLAGTVGKDKVVVSTSCSLLHTAVDLENETKLDQEIKSWLAFAAQKVVEVNALAK 366 (793)
Q Consensus 312 ~~~~~v~~e~l~vspsCgL~hvP~~~~~E~~l~~~~~~~lafA~qKl~El~~l~~ 366 (793)
++.++++++||++||||||..++.+ -|.+||+.|+..|+
T Consensus 285 ~a~~~~~~~~l~~sPdCGfa~~~~~----------------~a~~kL~~~v~aa~ 323 (324)
T PF01717_consen 285 EALEYVPLEQLWLSPDCGFASLTRE----------------EARAKLRNMVEAAR 323 (324)
T ss_dssp HHHTTS-GGGEEEEESSTSTTS-HH----------------HHHHHHHHHHHHHH
T ss_pred HHHhcCccccEEEcCCCCCCCCCHH----------------HHHHHHHHHHHHHc
Confidence 9999999999999999999987765 49999999999875
No 33
>PRK00957 methionine synthase; Provisional
Probab=100.00 E-value=9.3e-40 Score=354.91 Aligned_cols=294 Identities=17% Similarity=0.202 Sum_probs=237.0
Q ss_pred ceeccc-CCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHcCCcccCCCCcccchhhhhhHhhhCCCCC
Q 003819 2 ASHVVG-YPRMGPKRELKFALESFWDGKSSADELQNVAADLRASIWNQMADAGIKFIPSNTFSYYDQVLDTTAMLGAVPP 80 (793)
Q Consensus 2 ~t~~lG-~PRig~~reLK~A~e~yw~g~is~~eL~~~~~~~~~~~~~~Q~~aGld~ItdGefs~yD~vLD~~~~~g~ip~ 80 (793)
.||++| ||++ +++.+. +|..-.+.+.+.+..+++++..++.|+++|||+||||||| .|++.++...+.++
T Consensus 3 ~t~~vgs~p~~---~~~~~~---~~~~~~~~~~~~~~~~~ai~~~v~~q~~~Gld~vtdGe~r-~~~~~~f~~~l~G~-- 73 (305)
T PRK00957 3 ITTVVGSYPVV---KGEPET---LKDKIKGFFGLYDPYKPAIEEAVADQVKAGIDIISDGQVR-GDMVEIFASNMPGF-- 73 (305)
T ss_pred CcceecCCCCC---ccchhH---HHHhhcCHHHHHHHHHHHHHHHHHHHHHhCCCeecCCCcc-CchHHHHHhcCCCc--
Confidence 466666 9999 443332 3333377788999999999999999999999999999996 45567765544333
Q ss_pred cccCCCCccccchhhhhccCCCCCCccccceecccCceeecceecCCCccccC-CchhHHHHHHHHHc------CCCCce
Q 003819 81 RYSWNGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHYIVPELGPDVNFSYA-SHKAVQEYKEAKAL------GMETVP 153 (793)
Q Consensus 81 R~~~~~~~~~l~~yFa~arG~~~~~a~~mtKwFdtNYhY~vPe~~~~~~~~l~-~~~~~~e~~~a~~~------g~~~K~ 153 (793)
. | |.+.+ +++.. .+.++++|+++++. +.++|+
T Consensus 74 ---------------------~-------------~-----~~vvg--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vK~ 112 (305)
T PRK00957 74 ---------------------D-------------G-----KRVIG--RVEPPAKPITLKDLKYAKKVAKKKDPNKGVKG 112 (305)
T ss_pred ---------------------c-------------C-----CeEEE--eecCCCCCCcHHHHHHHHHHHhccCCCCceeE
Confidence 0 1 22334 34444 47899999999976 357899
Q ss_pred EeehHHHHhhhccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEeeccccccCCChHHHHHHHHHHHHHHhcc
Q 003819 154 VLVGPVSYLLLSKPAKGVEKSFSLLSLIDKIIPVYKEVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSL 233 (793)
Q Consensus 154 vl~GP~T~l~ls~~~~~~~~~~~~~~ll~~L~~~Y~~~l~~L~~aG~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~ 233 (793)
+|+||+|++.++.....| ......+++.+|+++|++++++|+++||++||||||+|+.++.. .+.+..+|+.+.++.
T Consensus 113 ~i~GP~Tla~~~~~~~~y-~~~~~~~~~~dla~~~~~~i~~l~~~G~~~IqiDEP~l~~~~~~--~~~~~~~~~~~~~~i 189 (305)
T PRK00957 113 IITGPSTLAYSLRVEPFY-SDNKDEELIYDLARALRKEAEALEKAGVAMIQIDEPILSTGAYD--LEVAKKAIDIITKGL 189 (305)
T ss_pred EecCHHHHHhhccccccc-CCccHHHHHHHHHHHHHHHHHHHHHcCCCEEEecChhhhcCCch--HHHHHHHHHHHHHhh
Confidence 999999999877642222 12233789999999999999999999999999999999987643 567778888887754
Q ss_pred CCCcEEEEeccCCCchhhHHHHhcCCCccEEEEEeccCCCChhhHhhhCCCCCEEEEEEeeCCCCCCCCHHHHHHHHHHH
Q 003819 234 SGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLIRGTKTLDLIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQDL 313 (793)
Q Consensus 234 ~~~~i~l~tyfg~~~~~~~~~l~~lp~Vd~l~lD~~~~~~~l~~l~~~~p~~k~l~lGvVdgrn~w~ed~~~i~~~i~~~ 313 (793)
+ ..+.+|+| |++ .++++.|.+++ ||+|+||++++..+++.+...++.+|.|++||||++|+|++++++++++|+++
T Consensus 190 ~-~~v~lH~C-G~~-~~i~~~l~~~~-vd~i~ld~~~~~~~l~~l~~~~~~~k~l~~GvId~~~~~~e~~e~v~~~i~~~ 265 (305)
T PRK00957 190 N-VPVAMHVC-GDV-SNIIDDLLKFN-VDILDHEFASNKKNLEILEEKDLIGKKIGFGCVDTKSKSVESVDEIKALIEEG 265 (305)
T ss_pred C-CceEEEEC-CCc-HHHHHHHHhCC-CCEEEEeecCCCCCHHHHhhhccCCCEEEEEEEcCCCCCCCCHHHHHHHHHHH
Confidence 2 45677877 888 88999999999 99999999887778888764456689999999999999999999999999999
Q ss_pred hhhcCCCcEEEeCCCCCcccccccccccCCcHHHHhHHHHHHHHHHHHHHHHHHc
Q 003819 314 AGTVGKDKVVVSTSCSLLHTAVDLENETKLDQEIKSWLAFAAQKVVEVNALAKAL 368 (793)
Q Consensus 314 ~~~v~~e~l~vspsCgL~hvP~~~~~E~~l~~~~~~~lafA~qKl~El~~l~~~l 368 (793)
.+++++++++|||||||.|+|++ -|.+||+.|+..++.+
T Consensus 266 ~~~~~~~~l~lsp~CGl~~~~~~----------------~~~~kL~~l~~aa~~~ 304 (305)
T PRK00957 266 IEILGAENILIDPDCGMRMLPRD----------------VAFEKLKNMVEAAREI 304 (305)
T ss_pred HHhcCHHHEEECCCcCCCcCCHH----------------HHHHHHHHHHHHHHHh
Confidence 99999899999999999999976 4999999999988653
No 34
>PF08267 Meth_synt_1: Cobalamin-independent synthase, N-terminal domain; InterPro: IPR013215 Cobalamin-independent methionine synthase, MetE, catalyses the synthesis of the amino acid methionine by the transfer of a methyl group from methyltetrahydrofolate to homocysteine []. The N-terminal and C-terminal domains of MetE together define a catalytic cleft in the enzyme. The N-terminal domain is thought to bind the substrate, in particular, the negatively charged polyglutamate chain. The N-terminal domain is also thought to stabilise a loop from the C-terminal domain.; GO: 0003871 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity, 0008270 zinc ion binding, 0008652 cellular amino acid biosynthetic process; PDB: 1U22_A 1U1H_A 1U1U_A 1U1J_A 3T0C_A 3L7R_A 2NQ5_A 3PPF_A 3PPH_A 3PPG_A ....
Probab=100.00 E-value=4.8e-40 Score=353.20 Aligned_cols=277 Identities=20% Similarity=0.254 Sum_probs=208.4
Q ss_pred ccccccCCC---cHHHHHHHHHHHccchhhHHHHHHhhccccceeeeehhhhcccCCHHHHHHHHHHHHHHHHHHHHHcC
Q 003819 434 TTTIGSFPQ---TMDLRRVRREFKAKKRVLLLFHILLLNFHHFQIVFHKLVFYFRISEDDYVKTIKEEINNVVKLQEELD 510 (793)
Q Consensus 434 tt~iGSfPr---~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~i~~Q~~~G 510 (793)
|+++| ||| .+|||+|.++||+|+ +|++++++..++...+.|+.|.++|
T Consensus 2 t~~lG-yPRiG~~RELK~alE~yW~g~----------------------------~~~~~L~~~~~~lr~~~w~~q~~ag 52 (310)
T PF08267_consen 2 THILG-YPRIGPNRELKKALEAYWKGK----------------------------ISEEELEQTAKELRKEHWQLQKEAG 52 (310)
T ss_dssp EE-S----SSTTTTHHHHHHHHHHTTS----------------------------S-HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred Ccccc-CCCCCCChHHHHHHHHHhhcC----------------------------CCHHHHHHHHHHHHHHHHHHHHHcC
Confidence 56677 999 799999999999999 9999999999999999999999999
Q ss_pred CCcccCCCCccchhHH-----------HHHh------------hccCc-eeeccceeeecCCcc-ccCcEEEccCCC--C
Q 003819 511 IDVLVHGEPERNDMVE-----------YFGE------------QLSGF-AFTVNGWVQSYGSRC-VKPPIIYGDVSR--P 563 (793)
Q Consensus 511 ldvi~~Ge~~r~d~v~-----------~f~e------------~l~G~-~~~~~g~v~~~~~~~-~~~P~i~g~v~~--~ 563 (793)
||.|+.|+|++||+|. .|.. .-.|. ...+.+|++||+||| |++|++.++... .
T Consensus 53 ld~ip~gdfs~YD~vLD~~~~~g~iP~rf~~~~~~~~l~~yFamARG~~~~~a~eMtKWFdTNYHY~VPE~~~~~~f~l~ 132 (310)
T PF08267_consen 53 LDLIPVGDFSLYDHVLDTAVLLGAIPERFRHADGLDDLDRYFAMARGTDDVPALEMTKWFDTNYHYIVPEITGDTEFKLD 132 (310)
T ss_dssp -SBEEES---SS-HHHHHHHHTT---GGGCT-TSSSSHHHHHHHHHSCCCCT--EEEESTTSS-EEEE-EE-TTS----S
T ss_pred CCcccCCCCchhhHHHHHHHHhccCChhhccCCCCCCHhheeeeccCCCCCchHHHHHHhccCCCeEceEECCCCceeeC
Confidence 9999999999999882 2221 01122 123457999999998 899999998654 3
Q ss_pred CCcchhHHHHHHhcCCCCceeeechHHHHhhcccccCCCChHHHHHHHHHHHHHHHHHHHHcCCcEEEEcCcccccCCCC
Q 003819 564 KAMTVFWSSMAQSMTKRPMKGMLTGPVTILNWSFVRNDQPRFETCYQIALAIKDEVEDLEKAGITVIQIDEAALREGLPL 643 (793)
Q Consensus 564 ~~~~~~~~~~aq~~t~kpvK~~LtGPvTll~~s~~~~~~~~~e~~~~lA~al~~ev~~L~~aGv~~IQIDEPal~~~l~l 643 (793)
.+..+++++.|+++. .++|++|+||+|++.+|...++.++.+++.+|+.+|.++++.|.++||.+||||||+|+.+++
T Consensus 133 ~~~~~~~~~eA~~~G-~~~kpvL~GP~TfL~Lsk~~~~~~~~~ll~~l~~vY~~ll~~L~~~G~~~VQldEP~Lv~d~~- 210 (310)
T PF08267_consen 133 SNKLLDEFREAKALG-INTKPVLPGPVTFLLLSKNEDGSDPLDLLDDLLPVYAELLKELAAAGVEWVQLDEPALVLDLP- 210 (310)
T ss_dssp CCHHHHHHHHHHHTT-GGEEEEEE-HHHHHHTSEETTCCHHHHHHHHHHHHHHHHHHHHHHTT-SEEEEE-GGGGSSGC-
T ss_pred cchHHHHHHHHHhhh-cCCeeEEEcHHHHHHHcCcCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEecCCeeecCCC-
Confidence 455678899997764 799999999999999999888888899999999999999999999999999999999997642
Q ss_pred CcccHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCchhHHHHHHcCCCcEEEEecCCCChhhHHHhhh-cccCCCeEe
Q 003819 644 RKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDADVITIENSRSDEKLLSVFRE-GVKYRAGIG 722 (793)
Q Consensus 644 ~~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~C~g~~~~i~~~l~~l~~D~isiE~~r~~~~~L~~~~~-~~~~~~~i~ 722 (793)
++..+.+..+++... .....+|+++++||+..+.++.+.++++|+|++|+.+ +.+.++.+.. .++.++.++
T Consensus 211 -----~~~~~~~~~aY~~L~--~~~~~~ill~TYFg~~~~~l~~l~~lpv~~l~lDlv~-~~~~l~~~~~~~~p~~k~L~ 282 (310)
T PF08267_consen 211 -----EEWLEAFEEAYEELA--AAPRPKILLATYFGDLGDNLELLLDLPVDGLHLDLVR-GPENLEALLKYGFPADKVLS 282 (310)
T ss_dssp -----HHHHHHHHHHHHHHC--CTTTSEEEEE--SS--CCHHHHHTTSSESEEEEETTT-HCHHHHHHHHHTTTTTSEEE
T ss_pred -----HHHHHHHHHHHHHHh--cCCCCcEEEECCCCchhhHHHHHhcCCCcEEEeeccC-CcccHHHHHhcCCCCCCEEE
Confidence 344556666777665 2345789999999999999999999999999999988 4455776665 145678999
Q ss_pred eeeecCCCCCCCCHHHHHHHHHHHHhh
Q 003819 723 PGVYDIHSPRIPSTEEIADRINKMLAV 749 (793)
Q Consensus 723 ~GVvD~~s~~ves~eev~~~i~~al~~ 749 (793)
+||||+||+|.++++++.+.++++.+.
T Consensus 283 ~GvVDGRNiW~~dl~~~~~~l~~l~~~ 309 (310)
T PF08267_consen 283 AGVVDGRNIWRTDLEAALALLEKLREK 309 (310)
T ss_dssp EEEE-SSS-B---HHHHHHHHHHHHHC
T ss_pred EEEECCccccccCHHHHHHHHHHHHhc
Confidence 999999999999999999999998764
No 35
>PRK06438 hypothetical protein; Provisional
Probab=100.00 E-value=3.1e-36 Score=315.55 Aligned_cols=282 Identities=10% Similarity=0.038 Sum_probs=245.4
Q ss_pred ccccccccCCCcHHHHHHHHHHHccchhhHHHHHHhhccccceeeeehhhhcccCCHHHHHHHHHHHHHHHHHHHHHcCC
Q 003819 432 LPTTTIGSFPQTMDLRRVRREFKAKKRVLLLFHILLLNFHHFQIVFHKLVFYFRISEDDYVKTIKEEINNVVKLQEELDI 511 (793)
Q Consensus 432 ~~tt~iGSfPr~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~i~~Q~~~Gl 511 (793)
+.+-++||||||.|+++.+++|+.|. ++.+++++.+.+++.+++..|.++||
T Consensus 2 ~~~~~~G~yPrp~~l~k~l~~~~~G~----------------------------i~~e~l~~~~~~~~~~~~~~q~~aGl 53 (292)
T PRK06438 2 VKKLVYGIYPRTEELRLEYNRWERGL----------------------------IPDSEINEKINEEKYIFYDKVKDIGI 53 (292)
T ss_pred cccccCCCCCCCHHHHHHHHHHHcCC----------------------------CcHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 45678999999999999999999999 99999999999999999999999999
Q ss_pred CcccCCCCccchhHHHHHhhccCceeeccceeeecCCc-cccCcEEEccCCCCCCcchhHHHHHHhc-------CCCCce
Q 003819 512 DVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSR-CVKPPIIYGDVSRPKAMTVFWSSMAQSM-------TKRPMK 583 (793)
Q Consensus 512 dvi~~Ge~~r~d~v~~f~e~l~G~~~~~~g~v~~~~~~-~~~~P~i~g~v~~~~~~~~~~~~~aq~~-------t~kpvK 583 (793)
|.+|||.++|+||+.+|...++|+ +.+|.+++|++| |||.|+|.|+++. ....+|+..++.. .+.++|
T Consensus 54 d~~tdG~lrWdDi~~~~~~~~~gv--e~ggL~Ry~dNN~fYR~Pvv~g~l~~--~~~~~~~~~~~e~~~~~~~~~~~~lk 129 (292)
T PRK06438 54 DEYTDPLFNWYDIFRPISLSVNGV--SLGPLTRYLETNTFYRIPEISGVKDF--NRELDKFQKIDENPPLPLYHLKKGIS 129 (292)
T ss_pred ceEecCccchHHhhhhHHHHhcCc--cccceeEEeccCceeecceecCCCCc--chhhHHHHHHHhcccccccCCCCCce
Confidence 999999999999999999999999 458999999876 6899999999988 3456788888775 335689
Q ss_pred eeechHHHHhhcccccCCCChHHHHHHHHHHHHHHHHHHHHcCCcEEEEcCcccccCCCCCcccHHHHHHHHHHHHHHHh
Q 003819 584 GMLTGPVTILNWSFVRNDQPRFETCYQIALAIKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITN 663 (793)
Q Consensus 584 ~~LtGPvTll~~s~~~~~~~~~e~~~~lA~al~~ev~~L~~aGv~~IQIDEPal~~~l~l~~~~~~~~l~~av~a~~~~~ 663 (793)
++||||+|++.+|.+++|.+..++..++|.++.+|+++|. +..|++.||++. .-+. .++++.+.+
T Consensus 130 avLPGPyT~a~lS~ne~Y~d~~e~~~aia~~l~~e~~al~---v~~v~l~EPsl~-~~~~-----~~~~e~~~e------ 194 (292)
T PRK06438 130 IFLPSPYSFYKMSKTLEKIDYNDFYKKLVNIYSRILDIFS---IKNVVLLDVFYY-KNDN-----YSYLSDLAK------ 194 (292)
T ss_pred EEecCchhHHHhhcccccCCHHHHHHHHHHHHHHHHHhCC---cceEEEecchhc-CCCc-----hhhhhhccc------
Confidence 9999999999999999999999999999999999999887 999999999998 3221 122222222
Q ss_pred cCCCCCCeEEEEeCCCCchhHHHHHHcCCCcEEEEecCCCChhhHHHhhhcccCCCeEeeeeecCCCCCCCCHHHHHHHH
Q 003819 664 CGVQDTTQVHTHMCYSNFNDIIHSIMDMDADVITIENSRSDEKLLSVFREGVKYRAGIGPGVYDIHSPRIPSTEEIADRI 743 (793)
Q Consensus 664 ~~v~~~~~I~lH~C~g~~~~i~~~l~~l~~D~isiE~~r~~~~~L~~~~~~~~~~~~i~~GVvD~~s~~ves~eev~~~i 743 (793)
+..+|+|++||.-.+.++.|. +++|+| + + .+.+..+.+ + .+ .|++||+|++|+.+|+++. ++++
T Consensus 195 -----~~~v~l~TYf~~~~~~~~~L~-~~vd~i-v---~--~~~l~~v~e-y-~~-~v~lGivdarnTkmE~~e~-~~~i 258 (292)
T PRK06438 195 -----KYNVILITSGNVSKLNFNGLG-HKFESI-V---R--DDEVDYIIN-K-CS-YPGIKIFSGDNTKMEDLKA-RKEI 258 (292)
T ss_pred -----cccEEEEEecCCchhhHHhhc-ccceeE-e---c--cchhhhHHh-h-cC-CceeeeeecCcccccCHHH-hhhc
Confidence 346899999998778999999 999999 3 2 345667776 4 44 7999999999999999999 8888
Q ss_pred HHHHhhcCCCcEEEcCCCCCCCCChhHHHHHHHHHHHHH
Q 003819 744 NKMLAVLESNILWVNPDCGLKTRKYSEVKPALSNMVAAA 782 (793)
Q Consensus 744 ~~al~~i~~~~l~vsPdCGL~t~~~~~~~~kL~~mv~aa 782 (793)
-+.++++|+|+|.|...+...+++||+++.+++
T Consensus 259 ------~~~~~v~vt~nt~ldfLP~~~a~~Kl~lL~k~~ 291 (292)
T PRK06438 259 ------SGYDNVLLTHSDYMDFLPREIADIKVELLGKAG 291 (292)
T ss_pred ------cCcceEEEcCCchhhhccHHHHHHHHHHHHhhc
Confidence 357899999999999999999999999999875
No 36
>PRK06438 hypothetical protein; Provisional
Probab=100.00 E-value=2.3e-35 Score=309.00 Aligned_cols=279 Identities=19% Similarity=0.276 Sum_probs=231.5
Q ss_pred Cceeccc-CCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHcCCcccCCCCcccchhhhhhHhhhCCCC
Q 003819 1 MASHVVG-YPRMGPKRELKFALESFWDGKSSADELQNVAADLRASIWNQMADAGIKFIPSNTFSYYDQVLDTTAMLGAVP 79 (793)
Q Consensus 1 ~~t~~lG-~PRig~~reLK~A~e~yw~g~is~~eL~~~~~~~~~~~~~~Q~~aGld~ItdGefs~yD~vLD~~~~~g~ip 79 (793)
+++-+.| |||+ .++++.+++|..|+++.+++.++.++.+.+.+..|+++|||.+|||.|+|+|-+ +.
T Consensus 2 ~~~~~~G~yPrp---~~l~k~l~~~~~G~i~~e~l~~~~~~~~~~~~~~q~~aGld~~tdG~lrWdDi~-~~-------- 69 (292)
T PRK06438 2 VKKLVYGIYPRT---EELRLEYNRWERGLIPDSEINEKINEEKYIFYDKVKDIGIDEYTDPLFNWYDIF-RP-------- 69 (292)
T ss_pred cccccCCCCCCC---HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHhcCCceEecCccchHHhh-hh--------
Confidence 3466777 9999 999999999999999999999999999999999999999999999999998752 22
Q ss_pred CcccCCCCccccchhhhhccCCCCCCccccceecccCceeecceecCCCccccCCchhHHHHHHHHHc--------CCCC
Q 003819 80 PRYSWNGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHYIVPELGPDVNFSYASHKAVQEYKEAKAL--------GMET 151 (793)
Q Consensus 80 ~R~~~~~~~~~l~~yFa~arG~~~~~a~~mtKwFdtNYhY~vPe~~~~~~~~l~~~~~~~e~~~a~~~--------g~~~ 151 (793)
.+...+| +...+++|+||||.+|+.|++.|...+ +...++|..+.++ +...
T Consensus 70 --------------~~~~~~g---ve~ggL~Ry~dNN~fYR~Pvv~g~l~~----~~~~~~~~~~~e~~~~~~~~~~~~l 128 (292)
T PRK06438 70 --------------ISLSVNG---VSLGPLTRYLETNTFYRIPEISGVKDF----NRELDKFQKIDENPPLPLYHLKKGI 128 (292)
T ss_pred --------------HHHHhcC---ccccceeEEeccCceeecceecCCCCc----chhhHHHHHHHhcccccccCCCCCc
Confidence 1122344 345689999999999999999996444 7888889988874 2345
Q ss_pred ceEeehHHHHhhhccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEeeccccccCCChH-HHHHHHHHHHHHH
Q 003819 152 VPVLVGPVSYLLLSKPAKGVEKSFSLLSLIDKIIPVYKEVVAELKAAGATWIQFDEPTLVLDLDSH-KLQAFSDAYSELQ 230 (793)
Q Consensus 152 K~vl~GP~T~l~ls~~~~~~~~~~~~~~ll~~L~~~Y~~~l~~L~~aG~~~VQiDEP~L~~d~~~~-~~~~~~~~y~~l~ 230 (793)
|.|||||+||..||.+. . |.|..+|+.+++.+|++++++|. ++.|+|.||+|. +.+.. ..+.+.+
T Consensus 129 kavLPGPyT~a~lS~ne-~---Y~d~~e~~~aia~~l~~e~~al~---v~~v~l~EPsl~-~~~~~~~~e~~~e------ 194 (292)
T PRK06438 129 SIFLPSPYSFYKMSKTL-E---KIDYNDFYKKLVNIYSRILDIFS---IKNVVLLDVFYY-KNDNYSYLSDLAK------ 194 (292)
T ss_pred eEEecCchhHHHhhccc-c---cCCHHHHHHHHHHHHHHHHHhCC---cceEEEecchhc-CCCchhhhhhccc------
Confidence 99999999999999852 2 46889999999999999999886 999999999999 54432 3333322
Q ss_pred hccCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEEeccCCCChhhHhhhCCCCCEEEEEEeeCCCCCCCCHHHHHHHH
Q 003819 231 SSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLIRGTKTLDLIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTL 310 (793)
Q Consensus 231 ~~~~~~~i~l~tyfg~~~~~~~~~l~~lp~Vd~l~lD~~~~~~~l~~l~~~~p~~k~l~lGvVdgrn~w~ed~~~i~~~i 310 (793)
+.+++|+||||.- ..++..|+ +| ||+| + +.+++..+.+ + .. .+++|||||||+.+|++++ .+++
T Consensus 195 ----~~~v~l~TYf~~~-~~~~~~L~-~~-vd~i----v-~~~~l~~v~e-y-~~-~v~lGivdarnTkmE~~e~-~~~i 258 (292)
T PRK06438 195 ----KYNVILITSGNVS-KLNFNGLG-HK-FESI----V-RDDEVDYIIN-K-CS-YPGIKIFSGDNTKMEDLKA-RKEI 258 (292)
T ss_pred ----cccEEEEEecCCc-hhhHHhhc-cc-ceeE----e-ccchhhhHHh-h-cC-CceeeeeecCcccccCHHH-hhhc
Confidence 2467889999985 88899999 99 9999 3 4577887876 5 44 7999999999999999999 8888
Q ss_pred HHHhhhcCCCcEEEeCCCCCcccccccccccCCcHHHHhHHHHHHHHHHHHHHH
Q 003819 311 QDLAGTVGKDKVVVSTSCSLLHTAVDLENETKLDQEIKSWLAFAAQKVVEVNAL 364 (793)
Q Consensus 311 ~~~~~~v~~e~l~vspsCgL~hvP~~~~~E~~l~~~~~~~lafA~qKl~El~~l 364 (793)
-|.++++|+|||.|..+|+. .|..||+-|..+
T Consensus 259 ------~~~~~v~vt~nt~ldfLP~~----------------~a~~Kl~lL~k~ 290 (292)
T PRK06438 259 ------SGYDNVLLTHSDYMDFLPRE----------------IADIKVELLGKA 290 (292)
T ss_pred ------cCcceEEEcCCchhhhccHH----------------HHHHHHHHHHhh
Confidence 35689999999999999987 488998876654
No 37
>PRK06052 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=100.00 E-value=1.3e-31 Score=286.00 Aligned_cols=293 Identities=17% Similarity=0.240 Sum_probs=214.4
Q ss_pred eecccCCCCCCCHHHHHHHHHhh---CCCCCHHHHHHHHHHHHHHHHHHHHHcCCcccCCCCcccchhhhhhHhhhCCCC
Q 003819 3 SHVVGYPRMGPKRELKFALESFW---DGKSSADELQNVAADLRASIWNQMADAGIKFIPSNTFSYYDQVLDTTAMLGAVP 79 (793)
Q Consensus 3 t~~lG~PRig~~reLK~A~e~yw---~g~is~~eL~~~~~~~~~~~~~~Q~~aGld~ItdGefs~yD~vLD~~~~~g~ip 79 (793)
|++++||++ ..+++ +.|- .|+++.++|.+ .+.+.++.|++||+|++|+|.|+ | |+++
T Consensus 7 ~~iGsyP~P---~~~~k--~~~~~~~~g~~~~e~l~~----~~~~~~~~q~dAGld~~Tdgqlr--D-m~~~-------- 66 (344)
T PRK06052 7 DDIGSFPLP---EGVTR--EWVENAFETREEDEKLFS----VVRSAFQMKIDAGVQVPTYPQFR--D-MIEQ-------- 66 (344)
T ss_pred ccCCCCCCC---ccccH--HHHhhhhcCCCcHHHHHH----HHHHHHHHHHhcCCccccchHHH--H-HHHh--------
Confidence 455559998 55655 5554 69999999998 88999999999999999999999 3 3332
Q ss_pred CcccCCCCccccchhhhhccCCCCCCccccceecccCceeecceecCCCcc-ccCC-chhHHHHHHHHHcCCCCceEeeh
Q 003819 80 PRYSWNGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHYIVPELGPDVNF-SYAS-HKAVQEYKEAKALGMETVPVLVG 157 (793)
Q Consensus 80 ~R~~~~~~~~~l~~yFa~arG~~~~~a~~mtKwFdtNYhY~vPe~~~~~~~-~l~~-~~~~~e~~~a~~~g~~~K~vl~G 157 (793)
++...+|.... + -.|.|-|=.. ++ .+.- .....+|++-.-....+|..|+|
T Consensus 67 --------------fl~~i~~~~~~---~--------~p~~~~~~~a--~i~el~~~~~~~~~~~~~~~~~~~VKv~iTG 119 (344)
T PRK06052 67 --------------FLDIIRDEKCC---E--------EPYVVKEECA--KILELEAIEEVAKEYKEETGETLEVRVCVTG 119 (344)
T ss_pred --------------HHHHHcCCccc---C--------CCeeeehhhh--hHHHHHHHHHHHHHHHHhhCCCCCeEEEecC
Confidence 12223442211 0 0132222111 11 1100 11222222222123468999999
Q ss_pred HHHHhhhccCCCCcCCCCC-HHHHHHHHHHHHHHHHHHHHHCCCCEEEeeccccccCCC-hHHHHHHHHHHHHH-----H
Q 003819 158 PVSYLLLSKPAKGVEKSFS-LLSLIDKIIPVYKEVVAELKAAGATWIQFDEPTLVLDLD-SHKLQAFSDAYSEL-----Q 230 (793)
Q Consensus 158 P~T~l~ls~~~~~~~~~~~-~~~ll~~L~~~Y~~~l~~L~~aG~~~VQiDEP~L~~d~~-~~~~~~~~~~y~~l-----~ 230 (793)
|+|++.++..... |.| ..++..+|+.+.+++++.|..+||.+||||||+|.+... ..+.+.+.++++.. .
T Consensus 120 P~tL~~~~f~~~~---Y~d~~~~la~~ia~~l~~e~~~l~~~gv~~IqIDEP~l~~~~~~~~~~~~~i~Al~~a~~~a~~ 196 (344)
T PRK06052 120 PTELYLQEFGGTI---YTDILLILAKSVERFVENAIKSAKNFKIKTISIDEPSLGINPEIQFSDDEIISALTVASTYARK 196 (344)
T ss_pred HHHHHHHHcCCcc---ccchHHHHHHHHHHHHHHHHHHHHHCCCCEEEecCcccccCCccccCHHHHHHHHHHHHhhhcc
Confidence 9999998875433 346 789999999999999999999999999999999998764 12455555666555 2
Q ss_pred hccCCCcEEEEeccCCCchhhH-HHHhcCCCccEEEEEeccCCCChhhHhhh-C-CCCCEEEEEEeeC--C---------
Q 003819 231 SSLSGLNVLIETYFADVPAETY-KILTSLKGVTGFGFDLIRGTKTLDLIKTE-F-PLGKYLFAGVVDG--R--------- 296 (793)
Q Consensus 231 ~~~~~~~i~l~tyfg~~~~~~~-~~l~~lp~Vd~l~lD~~~~~~~l~~l~~~-~-p~~k~l~lGvVdg--r--------- 296 (793)
.++ ++++++|+ . ++ +.++++|+||.|++||.+++.+|+.+.+. + ..+|.|++||+|+ +
T Consensus 197 ~gv-dv~i~lH~---~----l~~~~i~~~~~idvi~~E~A~~~~~L~~l~~~~~e~~dk~ig~GV~dtd~~~~~~~~~~~ 268 (344)
T PRK06052 197 QGA-DVEIHLHS---P----LYYELICETPGINVIGVESAATPSYLDLIDKKVLEDTDTFLRVGVARTDIFSLIAILNEK 268 (344)
T ss_pred CCc-ceEEEEeh---H----hhHHHHhcCCCCCEEeeeccCChHHHHHHhhhhhhhcCCceEEeEEEchhhcchhhhhhh
Confidence 323 35666665 2 45 89999988999999999988899888762 1 1479999999999 8
Q ss_pred ---------------CCCCCCHHHHHHHHHHHhhhcCCCcEEEeCCCCCcccc-cccccccCCcHHHHhHHHHHHHHHHH
Q 003819 297 ---------------NIWANDLASSLTTLQDLAGTVGKDKVVVSTSCSLLHTA-VDLENETKLDQEIKSWLAFAAQKVVE 360 (793)
Q Consensus 297 ---------------n~w~ed~~~i~~~i~~~~~~v~~e~l~vspsCgL~hvP-~~~~~E~~l~~~~~~~lafA~qKl~E 360 (793)
+..+|+++++.++|+++++++|++++||+|||||.+.| .. .|.+||..
T Consensus 269 ~~~n~~~~~~~~~~~~~~VEsveEI~~rI~~ale~i~~e~lwVNPDCGLK~~~e~~----------------~A~~KL~n 332 (344)
T PRK06052 269 YGTNAWKDKEYLQEIVTELETPEVIKKRLEKAYSIFGDRIKYVGPDCGLGSWPSQE----------------LAFRLLEN 332 (344)
T ss_pred cccccccchhhccccCCCCCCHHHHHHHHHHHHHhCChhhEEECCCCCCCCChhhH----------------HHHHHHHH
Confidence 78888999999999999999999999999999999764 22 59999999
Q ss_pred HHHHHHHcc
Q 003819 361 VNALAKALS 369 (793)
Q Consensus 361 l~~l~~~l~ 369 (793)
|+..++.++
T Consensus 333 mv~aa~~~r 341 (344)
T PRK06052 333 VAKAINEFR 341 (344)
T ss_pred HHHHHHHHH
Confidence 999988765
No 38
>KOG2263 consensus Methionine synthase II (cobalamin-independent) [Amino acid transport and metabolism]
Probab=99.97 E-value=1e-29 Score=273.82 Aligned_cols=296 Identities=18% Similarity=0.184 Sum_probs=239.5
Q ss_pred ccccccCCC---cHHHHHHHHHHHccchhhHHHHHHhhccccceeeeehhhhcccCCHHHHHHHHHHHHHHHHHHHHHcC
Q 003819 434 TTTIGSFPQ---TMDLRRVRREFKAKKRVLLLFHILLLNFHHFQIVFHKLVFYFRISEDDYVKTIKEEINNVVKLQEELD 510 (793)
Q Consensus 434 tt~iGSfPr---~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~i~~Q~~~G 510 (793)
.++|-+||| .+||+.|.+.||.|+ .|.+++.+..++.....|+.|.++|
T Consensus 3 ~S~i~G~PRiGp~RELK~A~E~~W~GK----------------------------ts~ddL~~va~~LR~~~WK~~k~aG 54 (765)
T KOG2263|consen 3 ASHIVGYPRIGPKRELKFALESFWDGK----------------------------TSADDLQKVAADLRSSIWKLMKAAG 54 (765)
T ss_pred ccccccCCCcCccHHHHHHHHhhccCC----------------------------CcHHHHHHHHHHHHHHHHHHHHhcC
Confidence 467788999 499999999999999 9999999999999999999999999
Q ss_pred CCcccCCCCccchhHH------------H-HHhhccCc-----------eeeccceeeecCCcc-ccCcEEEccCC--CC
Q 003819 511 IDVLVHGEPERNDMVE------------Y-FGEQLSGF-----------AFTVNGWVQSYGSRC-VKPPIIYGDVS--RP 563 (793)
Q Consensus 511 ldvi~~Ge~~r~d~v~------------~-f~e~l~G~-----------~~~~~g~v~~~~~~~-~~~P~i~g~v~--~~ 563 (793)
+|+|+.+.|+.||.|. | +...+.|+ ..++..|++||+||| |..|++..++. ..
T Consensus 55 v~~IPSN~FS~YDQvlD~t~~~~~vP~RYg~~sg~~~lD~yFsM~RG~~~v~A~EM~KWFDsNyHyi~Pe~~~e~~F~~~ 134 (765)
T KOG2263|consen 55 VKIIPSNTFSHYDQVLDTTAMLGAVPPRYGRTSGEIGLDVYFSMARGNASVPAMEMTKWFDSNYHYIVPELGPEVNFSYA 134 (765)
T ss_pred CeeecCCchhHHHHHHhHHHHhcCCCcccccccCccchhhhhhhhcCCCCcchHHHhhhhccCceeeccccCCccceeec
Confidence 9999999999999661 1 11222332 233345899999998 78898866664 34
Q ss_pred CCcchhHHHHHHhcCCCCceeeechHHHHhhcccccC----CCChHHHHHHHHHHHHHHHHHHHHcCCcEEEEcCccccc
Q 003819 564 KAMTVFWSSMAQSMTKRPMKGMLTGPVTILNWSFVRN----DQPRFETCYQIALAIKDEVEDLEKAGITVIQIDEAALRE 639 (793)
Q Consensus 564 ~~~~~~~~~~aq~~t~kpvK~~LtGPvTll~~s~~~~----~~~~~e~~~~lA~al~~ev~~L~~aGv~~IQIDEPal~~ 639 (793)
....++++..|+.+. .-..++|.||+|++..+.... ......++.+|...|.+.+..|.+||+.+||||||.|..
T Consensus 135 s~KavdEf~EAK~lG-i~T~PVLvGPvsYL~l~K~aKg~~ks~~~lsLl~kiLPvY~Evi~kL~sAGA~~iQiDEPilvm 213 (765)
T KOG2263|consen 135 SHKAVDEFKEAKALG-IDTVPVLVGPVSYLLLSKAAKGVDKSFELLSLLPKILPVYKEVIAKLKSAGATWIQIDEPILVM 213 (765)
T ss_pred cchhHHHHHHHHhcC-CcccceeecchhhhheeccccCcccccchHHHHHHHhHHHHHHHHHHHhcCCeEEEcCCceEEe
Confidence 666789999999873 556779999999998887543 346778999999999999999999999999999999998
Q ss_pred CCCCCcccHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCchh-HHHHHHcCC-CcEEEEecCCCChhhHHHhhhcccC
Q 003819 640 GLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFND-IIHSIMDMD-ADVITIENSRSDEKLLSVFREGVKY 717 (793)
Q Consensus 640 ~l~l~~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~C~g~~~~-i~~~l~~l~-~D~isiE~~r~~~~~L~~~~~~~~~ 717 (793)
+||.. -+.....|+...-+... ..++.+.++||+... .++.|..++ +.++++|..|... .++.+...++.
T Consensus 214 DL~~~------~l~a~k~AY~~l~~~~~-~~~v~l~TYF~~v~~~a~~~lk~L~~v~~~~~D~VR~~e-~lD~~~a~~~~ 285 (765)
T KOG2263|consen 214 DLPGE------KLQAFKGAYAELESTLS-GLNVLLATYFADVPAEAYKTLKSLKGVTAFGFDLVRGPE-TLDLVKAGFPE 285 (765)
T ss_pred eCcHH------HHHHHHHHHHHHHhhcc-ccceeehhhhccCCHHHHHHHhCCcceeeeeeeeeechh-hHHHHHhcCCC
Confidence 77632 23333334443333332 246899999998754 489999999 9999999999643 45554432566
Q ss_pred CCeEeeeeecCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEcCCCCCCCC
Q 003819 718 RAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLESNILWVNPDCGLKTR 766 (793)
Q Consensus 718 ~~~i~~GVvD~~s~~ves~eev~~~i~~al~~i~~~~l~vsPdCGL~t~ 766 (793)
++.+..||||++|+|..+...-...++++...+|.+++.|+++|+|.|-
T Consensus 286 ~k~l~~GvVdGRNIW~nDf~~s~a~l~k~~~~vG~dkvvVstS~SlLHt 334 (765)
T KOG2263|consen 286 GKYLFAGVVDGRNIWANDFAASLATLQKLEGIVGKDKVVVSTSCSLLHT 334 (765)
T ss_pred CceEEEEEeccchhhhhhHHHHHHHHHHHHHhhccceEEEeechhhhcc
Confidence 7889999999999999999999999999999999999999999999984
No 39
>cd00465 URO-D_CIMS_like The URO-D_CIMS_like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases, as well as cobalamine (B12) independent methionine synthases. Despite their sequence similarities, members of this family have clearly different functions. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane, and methionine synthases transfer a methyl group from a folate cofactor to L-homocysteine in a reaction requiring zinc.
Probab=99.94 E-value=5.5e-26 Score=246.69 Aligned_cols=266 Identities=21% Similarity=0.278 Sum_probs=208.7
Q ss_pred HHHHHHHHHHHHHcCCCcccCCCCccchhHHHHHhhccCceeeccceeeecCCccccCcEEEccC-CCCCCcchhHHHHH
Q 003819 496 KEEINNVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPPIIYGDV-SRPKAMTVFWSSMA 574 (793)
Q Consensus 496 ~~~i~~~i~~Q~~~Gldvi~~Ge~~r~d~v~~f~e~l~G~~~~~~g~v~~~~~~~~~~P~i~g~v-~~~~~~~~~~~~~a 574 (793)
.+.+..++..|+ .|+|++++|| +++..|++.|+|. +.++++.++..|.+.++. +..-++.+++.+.+
T Consensus 29 ~~~~~~~~~~~~-~g~D~~~~~~----~~~~~~~ealg~~-------~~~~~~~~p~v~~~~~~~~~~~~~~~~~~~~~~ 96 (306)
T cd00465 29 AEWGITLVEPEE-IPLDVIPVHE----DDVLKVAQALGEW-------AFRYYSQAPSVPEIDEEEDPFREAPALEHITAV 96 (306)
T ss_pred chhhceeecccc-CCCCeeeecC----cceeehhhhcCce-------EEecCCCCCCCCCcccCCChhhHHHHHHHHHHH
Confidence 345566777788 9999999998 6789999999864 333444445556555554 34456788999999
Q ss_pred HhcCCCCceeeechHHHHhhcccccCC---------CChHHHHHHHHHHHHHHHHHHHHcCCcEEEEcCcccccCCCCCc
Q 003819 575 QSMTKRPMKGMLTGPVTILNWSFVRND---------QPRFETCYQIALAIKDEVEDLEKAGITVIQIDEAALREGLPLRK 645 (793)
Q Consensus 575 q~~t~kpvK~~LtGPvTll~~s~~~~~---------~~~~e~~~~lA~al~~ev~~L~~aGv~~IQIDEPal~~~l~l~~ 645 (793)
++.+++|+|+.++||+|++.++....+ ....+++..+++.++++++++.++|+++||++||.+....+.
T Consensus 97 ~~~~~~~v~~~~~GP~Tla~~l~~~~~~~~~~~~~p~~~~~ll~~i~~~~~~~~~~~~eaG~d~i~i~dp~~~~~~~~-- 174 (306)
T cd00465 97 RSLEEFPTAGAAGGPFTFTHHSMSMGDALMALYERPEAMHELIEYLTEFILEYAKTLIEAGAKALQIHEPAFSQINSF-- 174 (306)
T ss_pred HhccccceEeecCCHHHHHHHHHcccHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecccccccCCC--
Confidence 988889999999999999998876443 345678899999999999999999999999999998876321
Q ss_pred ccHHHHHHHHHHHHHHHhcCCCC-CCeEEEEeCCCCchhHHHHHHcCCCcEEEEecCCCChhhHHHhhhcccCCCeEeee
Q 003819 646 SEQDFYLKWAVHSFRITNCGVQD-TTQVHTHMCYSNFNDIIHSIMDMDADVITIENSRSDEKLLSVFREGVKYRAGIGPG 724 (793)
Q Consensus 646 ~~~~~~l~~av~a~~~~~~~v~~-~~~I~lH~C~g~~~~i~~~l~~l~~D~isiE~~r~~~~~L~~~~~~~~~~~~i~~G 724 (793)
-+++.|.+++.+.++++.+.+.. ...+++|+|+ +..++++.+.++++|++++|.... +..+..+. ++.+..|..|
T Consensus 175 is~~~~~e~~~p~~k~i~~~i~~~~~~~~lH~cg-~~~~~~~~l~~~~~d~~~~d~~~~--d~~~~~~~-~~~~~~i~Gg 250 (306)
T cd00465 175 LGPKMFKKFALPAYKKVAEYKAAGEVPIVHHSCY-DAADLLEEMIQLGVDVISFDMTVN--EPKEAIEK-VGEKKTLVGG 250 (306)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhhcCCceEEEECC-CHHHHHHHHHHhCcceEecccccC--CHHHHHHH-hCCCEEEECC
Confidence 24678899999999999887643 4578999995 447899999999999999997652 23344443 3323457777
Q ss_pred eecCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEcCCCCCCCCChhHHHHHHHHHHHHHH
Q 003819 725 VYDIHSPRIPSTEEIADRINKMLAVLESNILWVNPDCGLKTRKYSEVKPALSNMVAAAK 783 (793)
Q Consensus 725 VvD~~s~~ves~eev~~~i~~al~~i~~~~l~vsPdCGL~t~~~~~~~~kL~~mv~aa~ 783 (793)
|.+++.. .++|+|.+.++++++.++. +.|+||+||+.+.++.. .++|++|++|++
T Consensus 251 v~~~~~~--~~~e~i~~~v~~~l~~~~~-~~il~~~cgi~~~~~~~-~enl~a~v~a~~ 305 (306)
T cd00465 251 VDPGYLP--ATDEECIAKVEELVERLGP-HYIINPDCGLGPDSDYK-PEHLRAVVQLVD 305 (306)
T ss_pred CCccccC--CCHHHHHHHHHHHHHHhCC-CeEEeCCCCCCCCCCCc-HHHHHHHHHHhh
Confidence 7666543 4569999999999999876 89999999999988855 699999999986
No 40
>cd00465 URO-D_CIMS_like The URO-D_CIMS_like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases, as well as cobalamine (B12) independent methionine synthases. Despite their sequence similarities, members of this family have clearly different functions. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane, and methionine synthases transfer a methyl group from a folate cofactor to L-homocysteine in a reaction requiring zinc.
Probab=99.78 E-value=2.3e-18 Score=187.03 Aligned_cols=217 Identities=17% Similarity=0.190 Sum_probs=163.0
Q ss_pred ceecccCceeecceecCCCccccCCchhHHHHHHHHHcC-CCCceEeehHHHHhhhccCCCC-----cCCCCCHHHHHHH
Q 003819 110 TKWFDTNYHYIVPELGPDVNFSYASHKAVQEYKEAKALG-METVPVLVGPVSYLLLSKPAKG-----VEKSFSLLSLIDK 183 (793)
Q Consensus 110 tKwFdtNYhY~vPe~~~~~~~~l~~~~~~~e~~~a~~~g-~~~K~vl~GP~T~l~ls~~~~~-----~~~~~~~~~ll~~ 183 (793)
.-||++|+|+.+|+..++. .+...+..++..+.+++.+ .++|.+++||+|++..+..... +....+..++++.
T Consensus 63 ~~~~~~~~~p~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~GP~Tla~~l~~~~~~~~~~~~~p~~~~~ll~~ 141 (306)
T cd00465 63 WAFRYYSQAPSVPEIDEEE-DPFREAPALEHITAVRSLEEFPTAGAAGGPFTFTHHSMSMGDALMALYERPEAMHELIEY 141 (306)
T ss_pred eEEecCCCCCCCCCcccCC-ChhhHHHHHHHHHHHHhccccceEeecCCHHHHHHHHHcccHHHHHHHHChHHHHHHHHH
Confidence 3388999999999886642 1233467888999998774 7789999999999976553211 0000134578999
Q ss_pred HHHHHHHHHHHHHHCCCCEEEeeccccccCC---ChH-HHHHHHHHHHHHHhcc--CCCcEEEEeccCCCchhhHHHHhc
Q 003819 184 IIPVYKEVVAELKAAGATWIQFDEPTLVLDL---DSH-KLQAFSDAYSELQSSL--SGLNVLIETYFADVPAETYKILTS 257 (793)
Q Consensus 184 L~~~Y~~~l~~L~~aG~~~VQiDEP~L~~d~---~~~-~~~~~~~~y~~l~~~~--~~~~i~l~tyfg~~~~~~~~~l~~ 257 (793)
++.++.+.++++.++||++||+|||.++.+. +.+ +.+.+...++++.+.. .+..+.+|+|++ . .+.++.+.+
T Consensus 142 i~~~~~~~~~~~~eaG~d~i~i~dp~~~~~~~~is~~~~~e~~~p~~k~i~~~i~~~~~~~~lH~cg~-~-~~~~~~l~~ 219 (306)
T cd00465 142 LTEFILEYAKTLIEAGAKALQIHEPAFSQINSFLGPKMFKKFALPAYKKVAEYKAAGEVPIVHHSCYD-A-ADLLEEMIQ 219 (306)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEecccccccCCCCCHHHHHHHHHHHHHHHHHHHhhcCCceEEEECCC-H-HHHHHHHHH
Confidence 9999999999999999999999999998873 443 3444556666665432 235788999955 3 467999999
Q ss_pred CCCccEEEEEeccCCCChhhHhhhCCCCCEEEEEEeeCCCCCCCCHHHHHHHHHHHhhhcCCCcEEEeCCCCCccccc
Q 003819 258 LKGVTGFGFDLIRGTKTLDLIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVSTSCSLLHTAV 335 (793)
Q Consensus 258 lp~Vd~l~lD~~~~~~~l~~l~~~~p~~k~l~lGvVdgrn~w~ed~~~i~~~i~~~~~~v~~e~l~vspsCgL~hvP~ 335 (793)
++ +|++++|+.. .+...+++.++.++.|..||.++++.+. .+++.+.++++++.++. +.+++|+||+.+.+.
T Consensus 220 ~~-~d~~~~d~~~--~d~~~~~~~~~~~~~i~Ggv~~~~~~~~--~e~i~~~v~~~l~~~~~-~~il~~~cgi~~~~~ 291 (306)
T cd00465 220 LG-VDVISFDMTV--NEPKEAIEKVGEKKTLVGGVDPGYLPAT--DEECIAKVEELVERLGP-HYIINPDCGLGPDSD 291 (306)
T ss_pred hC-cceEeccccc--CCHHHHHHHhCCCEEEECCCCccccCCC--HHHHHHHHHHHHHHhCC-CeEEeCCCCCCCCCC
Confidence 99 9999999876 2344444447766789999999866443 39999999999998875 899999999987543
No 41
>cd03465 URO-D_like The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane.
Probab=99.73 E-value=7.5e-17 Score=177.04 Aligned_cols=192 Identities=17% Similarity=0.196 Sum_probs=158.2
Q ss_pred CCceeeechHHHHhhcccccC------CCC---hHHHHHHHHHHHHHHHHHHHHcCCcEEEEcCcccccCCCCCcccHHH
Q 003819 580 RPMKGMLTGPVTILNWSFVRN------DQP---RFETCYQIALAIKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDF 650 (793)
Q Consensus 580 kpvK~~LtGPvTll~~s~~~~------~~~---~~e~~~~lA~al~~ev~~L~~aGv~~IQIDEPal~~~l~l~~~~~~~ 650 (793)
.|+++.+.||+|++.+.+..+ +.+ ..++++.+++.+.+.++.+.++|+++||++||.....+ -+++.
T Consensus 126 ~~v~g~~~gP~t~a~~l~g~~~~~~~~~~~pe~~~~~l~~i~~~~~~~~~~~~~~G~d~i~i~d~~~~~~~----isp~~ 201 (330)
T cd03465 126 VPVIGAVGGPFTLASLLMGASKFLMLLYTDPELVHKLLEKCTEFIIRYADALIEAGADGIYISDPWASSSI----LSPED 201 (330)
T ss_pred eeeeccCCCHHHHHHHHHhHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCccccCC----CCHHH
Confidence 789999999999998765421 112 36788889999999999999999999999999876532 24678
Q ss_pred HHHHHHHHHHHHhcCCCC-CCeEEEEeCCCCchhHHHHHHcCCCcEEEEecCCCChhhHHHhhhcccCCCeEeeeeecCC
Q 003819 651 YLKWAVHSFRITNCGVQD-TTQVHTHMCYSNFNDIIHSIMDMDADVITIENSRSDEKLLSVFREGVKYRAGIGPGVYDIH 729 (793)
Q Consensus 651 ~l~~av~a~~~~~~~v~~-~~~I~lH~C~g~~~~i~~~l~~l~~D~isiE~~r~~~~~L~~~~~~~~~~~~i~~GVvD~~ 729 (793)
|.+++.+.++++++.++. ...+++|+| |+.+.+++.+.++++|++++|... + +..+++ .-.++.+..|.+|..
T Consensus 202 f~e~~~p~~k~i~~~i~~~g~~~~lH~c-G~~~~~~~~l~~~~~d~~~~d~~~-d---l~~~~~-~~g~~~~i~G~id~~ 275 (330)
T cd03465 202 FKEFSLPYLKKVFDAIKALGGPVIHHNC-GDTAPILELMADLGADVFSIDVTV-D---LAEAKK-KVGDKACLMGNLDPI 275 (330)
T ss_pred HHHHhhHHHHHHHHHHHHcCCceEEEEC-CCchhHHHHHHHhCCCeEeecccC-C---HHHHHH-HhCCceEEEeCcChH
Confidence 999999999999888863 357899999 999899999999999999999765 3 333333 111367999999997
Q ss_pred -CCCCCCHHHHHHHHHHHHhhcCC--CcEEEcCCCCCCCCChhHHHHHHHHHHHHHHH
Q 003819 730 -SPRIPSTEEIADRINKMLAVLES--NILWVNPDCGLKTRKYSEVKPALSNMVAAAKL 784 (793)
Q Consensus 730 -s~~ves~eev~~~i~~al~~i~~--~~l~vsPdCGL~t~~~~~~~~kL~~mv~aa~~ 784 (793)
.....|+|+|.+.++++++.++. ++.++||+||+...++ .++|++|++|++.
T Consensus 276 ~~l~~gt~eei~~~v~~~l~~~~~~~~~~il~~gc~i~~~~p---~enl~a~v~a~~~ 330 (330)
T cd03465 276 DVLLNGSPEEIKEEVKELLEKLLKGGGGYILSSGCEIPPDTP---IENIKAMIDAVRE 330 (330)
T ss_pred HhhcCCCHHHHHHHHHHHHHHHhCCCCCEEEeCCCCCCCCCC---HHHHHHHHHHHhC
Confidence 77778999999999999998865 7899999999987777 6999999999873
No 42
>PRK06252 methylcobalamin:coenzyme M methyltransferase; Validated
Probab=99.68 E-value=6.3e-16 Score=170.67 Aligned_cols=191 Identities=17% Similarity=0.203 Sum_probs=152.8
Q ss_pred CCCceeeechHHHHhhcccccC--------CC-ChHHHHHHHHHHHHHHHHHHHHcCCcEEEEcCcccccCCCCCcccHH
Q 003819 579 KRPMKGMLTGPVTILNWSFVRN--------DQ-PRFETCYQIALAIKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQD 649 (793)
Q Consensus 579 ~kpvK~~LtGPvTll~~s~~~~--------~~-~~~e~~~~lA~al~~ev~~L~~aGv~~IQIDEPal~~~l~l~~~~~~ 649 (793)
+.|+.+.++||+|++.+..... +. ...++++.+++.+.+.++.+.++|+++||+++|.....+ -+++
T Consensus 137 ~~pv~g~v~gP~Tla~~l~g~~~~~~~l~~~pe~~~~ll~~i~~~~~~~~~~~~~aGad~I~i~d~~a~~~~----lsp~ 212 (339)
T PRK06252 137 EVPIIAGLTGPISLASSLMGPKNFLKWLIKKPELAHEFLDFVTDFCIEYAKAQLEAGADVICIADPSASPEL----LGPK 212 (339)
T ss_pred cCceeCccCChHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCCccccc----cCHH
Confidence 3799999999999998765321 11 123456667778888999999999999999999765322 2568
Q ss_pred HHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCchhHHHHHHcCCCcEEEEecCCCChhhHHHhhhcccCCCeEeeeeecC-
Q 003819 650 FYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDADVITIENSRSDEKLLSVFREGVKYRAGIGPGVYDI- 728 (793)
Q Consensus 650 ~~l~~av~a~~~~~~~v~~~~~I~lH~C~g~~~~i~~~l~~l~~D~isiE~~r~~~~~L~~~~~~~~~~~~i~~GVvD~- 728 (793)
.|.+++.+.++++.+.++.. ...+|+| |+...+++.+.++++|++++|... + +...++ .-.++.+..|.+|.
T Consensus 213 ~f~ef~~p~~~~i~~~i~~~-~~ilH~c-G~~~~~l~~~~~~g~d~~~~d~~~-d---l~~~~~-~~g~~~~i~Gnidp~ 285 (339)
T PRK06252 213 MFEEFVLPYLNKIIDEVKGL-PTILHIC-GDLTSILEEMADCGFDGISIDEKV-D---VKTAKE-NVGDRAALIGNVSTS 285 (339)
T ss_pred HHHHHHHHHHHHHHHHhccC-CcEEEEC-CCchHHHHHHHhcCCCeeccCCCC-C---HHHHHH-HhCCCeEEEeccCcH
Confidence 89999999999999999754 5789999 888899999999999999999665 3 222232 11146799999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCCCcEEEcCCCCCCCCChhHHHHHHHHHHHHHHHHH
Q 003819 729 HSPRIPSTEEIADRINKMLAVLESNILWVNPDCGLKTRKYSEVKPALSNMVAAAKLLR 786 (793)
Q Consensus 729 ~s~~ves~eev~~~i~~al~~i~~~~l~vsPdCGL~t~~~~~~~~kL~~mv~aa~~~r 786 (793)
......|+|+|.+.++++++. ...++||+||+.+.++ .+++++|++|++..+
T Consensus 286 ~~l~~gt~eeI~~~v~~~l~~---g~~Il~~gcgi~~~tp---~enl~a~v~a~~~~~ 337 (339)
T PRK06252 286 FTLLNGTPEKVKAEAKKCLED---GVDILAPGCGIAPKTP---LENIKAMVEARKEYY 337 (339)
T ss_pred HHhcCCCHHHHHHHHHHHHHc---CCCEEcCCCCCCCCCC---HHHHHHHHHHHHHhc
Confidence 667778999999999999983 3569999999998888 899999999999865
No 43
>TIGR01463 mtaA_cmuA methyltransferase, MtaA/CmuA family. This subfamily is closely related to, yet is distinct from, uroporphyrinogen decarboxylase (EC 4.1.1.37). It includes two isozymes from Methanosarcina barkeri of methylcobalamin--coenzyme M methyltransferase. It also includes a chloromethane utilization protein, CmuA, which transfers the methyl group of chloromethane to a corrinoid protein.
Probab=99.68 E-value=6.5e-16 Score=170.68 Aligned_cols=203 Identities=14% Similarity=0.115 Sum_probs=154.8
Q ss_pred chhHHHHHHhcC--CCCceeeechHHHHhhcccccC--------CC-ChHHHHHHHHHHHHHHHHHHHHcCCcEEEEcCc
Q 003819 567 TVFWSSMAQSMT--KRPMKGMLTGPVTILNWSFVRN--------DQ-PRFETCYQIALAIKDEVEDLEKAGITVIQIDEA 635 (793)
Q Consensus 567 ~~~~~~~aq~~t--~kpvK~~LtGPvTll~~s~~~~--------~~-~~~e~~~~lA~al~~ev~~L~~aGv~~IQIDEP 635 (793)
.++.++..++.. ++|+++.++||+|++.+..... +. ...++++.+++.+.+.++.+.++|+++||+.+|
T Consensus 123 ~l~ai~~l~~~~~~~~pv~g~v~GP~Tla~~l~g~~~~~~~~~~~pe~v~~ll~~i~~~~~~~~~~~~~~Gad~I~i~dp 202 (340)
T TIGR01463 123 VLEAIKILRERYGDTHPIIGPMGGPFTLAQLMIGVSEFLSWISTDPDYAKAVLELALDFVIAYAKAMVEAGADVIAIADP 202 (340)
T ss_pred HHHHHHHHHHHcCCceeeeCCCCcHHHHHHHHHCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEecCC
Confidence 345555555443 3699999999999998654211 11 233456667788889999999999999999999
Q ss_pred ccccCCCCCcccHHHHHHHHHHHHHHHhcCCCC-CCeEEEEeCCCCchhHHHHHHcCCCcEEEEecCCCChhhHHHhhhc
Q 003819 636 ALREGLPLRKSEQDFYLKWAVHSFRITNCGVQD-TTQVHTHMCYSNFNDIIHSIMDMDADVITIENSRSDEKLLSVFREG 714 (793)
Q Consensus 636 al~~~l~l~~~~~~~~l~~av~a~~~~~~~v~~-~~~I~lH~C~g~~~~i~~~l~~l~~D~isiE~~r~~~~~L~~~~~~ 714 (793)
.....+ -+++.|.+++.+.++++++.++. ....++|+| |+...+++.+.++++|++++|...+ ++. .++
T Consensus 203 ~a~~~~----lsp~~f~e~~~p~~k~i~~~i~~~g~~~ilH~C-G~~~~~~~~l~~~g~d~ls~d~~~~-l~~---~~~- 272 (340)
T TIGR01463 203 FASSDL----ISPETYKEFGLPYQKRLFAYIKEIGGITVLHIC-GFTQPILRDIANNGCFGFSVDMKPG-MDH---AKR- 272 (340)
T ss_pred ccCccc----cCHHHHHHHHHHHHHHHHHHHHhcCCceEEEEC-CCchhhHHHHHHhCCCEEeecCCCC-HHH---HHH-
Confidence 864321 24688999999999999988753 245689999 8888899999999999999997653 332 222
Q ss_pred ccCCCeEeeeeecCCCC-CCCCHHHHHHHHHHHHhhcCCCcEEEcCCCCCCCCChhHHHHHHHHHHHHHHHH
Q 003819 715 VKYRAGIGPGVYDIHSP-RIPSTEEIADRINKMLAVLESNILWVNPDCGLKTRKYSEVKPALSNMVAAAKLL 785 (793)
Q Consensus 715 ~~~~~~i~~GVvD~~s~-~ves~eev~~~i~~al~~i~~~~l~vsPdCGL~t~~~~~~~~kL~~mv~aa~~~ 785 (793)
.-.++.+..|++|.... ...|+|+|.+.++++++ ..+.++||+||+...++ .++|++|++|++..
T Consensus 273 ~~g~~~~i~Gnidp~~ll~~gt~eeI~~~v~~~l~---~~~~Il~~gcgi~~~tp---~eni~a~v~a~~~~ 338 (340)
T TIGR01463 273 VIGGQASLVGNLSPFSTLMNGTPEKVKKLAKEVLY---NGGDIVMPGCDIDWMTP---LENLKAMIEACKSI 338 (340)
T ss_pred HcCCceEEEecCChHHHhcCCCHHHHHHHHHHHHH---cCCeEECCCCCCCCCCC---HHHHHHHHHHHHhc
Confidence 11135677999998554 45799999999999998 36789999999988777 89999999999864
No 44
>cd03307 Mta_CmuA_like MtaA_CmuA_like family. MtaA/CmuA, also MtsA, or methyltransferase 2 (MT2) MT2-A and MT2-M isozymes, are methylcobamide:Coenzyme M methyltransferases, which play a role in metabolic pathways of methane formation from various substrates, such as methylated amines and methanol. Coenzyme M, 2-mercaptoethylsulfonate or CoM, is methylated during methanogenesis in a reaction catalyzed by three proteins. A methyltransferase methylates the corrinoid cofactor, which is bound to a second polypeptide, a corrinoid protein. The methylated corrinoid protein then serves as a substrate for MT2-A and related enzymes, which methylate CoM.
Probab=99.54 E-value=8.5e-14 Score=153.05 Aligned_cols=189 Identities=20% Similarity=0.233 Sum_probs=148.4
Q ss_pred CCCceeeechHHHHhhcccccC--------C-CChHHHHHHHHHHHHHHHHHHHHcCCcEEEEcCcccccCCCCCcccHH
Q 003819 579 KRPMKGMLTGPVTILNWSFVRN--------D-QPRFETCYQIALAIKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQD 649 (793)
Q Consensus 579 ~kpvK~~LtGPvTll~~s~~~~--------~-~~~~e~~~~lA~al~~ev~~L~~aGv~~IQIDEPal~~~l~l~~~~~~ 649 (793)
++|+.+.+.||+|++.+..... + ....++++.+++.+.+.++.+.++|+++||+.+|.....+ -+++
T Consensus 128 ~~pvig~~~gP~Tla~~l~g~~~~~~~~~~~pe~~~~ll~~it~~~~~~~~~~~eaGad~i~i~d~~a~~~~----isp~ 203 (326)
T cd03307 128 EVPVIGGMTGPASLASHLAGVENFLKWLIKKPEKVREFLEFLTEACIEYAKAQLEAGADIITIADPTASPEL----ISPE 203 (326)
T ss_pred cceeeCCCCCHHHHHHHHHhHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEecCCCccccc----cCHH
Confidence 4799999999999998654311 1 1233566667777788899899999999999999764321 2568
Q ss_pred HHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCchhHHHHHHcCCCcEEEEecCCCChhhHHHhhhcccCCCeEeeeeecCC
Q 003819 650 FYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDADVITIENSRSDEKLLSVFREGVKYRAGIGPGVYDIH 729 (793)
Q Consensus 650 ~~l~~av~a~~~~~~~v~~~~~I~lH~C~g~~~~i~~~l~~l~~D~isiE~~r~~~~~L~~~~~~~~~~~~i~~GVvD~~ 729 (793)
.|.+++.+.++++++.++. ..+++|+| |+...+++.+.++++|++++|... +. +..++ .-.++....|.+|..
T Consensus 204 ~f~e~~~p~~k~i~~~i~~-~~~ilh~c-G~~~~~l~~~~~~g~d~~~~d~~~-dl---~e~~~-~~g~~~~i~Gnidp~ 276 (326)
T cd03307 204 FYEEFALPYHKKIVKELHG-CPTILHIC-GNTTPILEYIAQCGFDGISVDEKV-DV---KTAKE-IVGGRAALIGNVSPS 276 (326)
T ss_pred HHHHHHHHHHHHHHHHHhc-CCcEEEEC-CCChhHHHHHHHcCCCeecccccC-CH---HHHHH-HcCCceEEEeCCChH
Confidence 8999999999999998875 56899999 888889999999999999999654 32 22222 111357889999987
Q ss_pred -CCCCCCHHHHHHHHHHHHhhcCCCcEEEcCCCCCCCCChhHHHHHHHHHHHHHHH
Q 003819 730 -SPRIPSTEEIADRINKMLAVLESNILWVNPDCGLKTRKYSEVKPALSNMVAAAKL 784 (793)
Q Consensus 730 -s~~ves~eev~~~i~~al~~i~~~~l~vsPdCGL~t~~~~~~~~kL~~mv~aa~~ 784 (793)
.....|+|+|.+.++++++. ...++||+||+.+-++ .+++++|++|+++
T Consensus 277 ~~l~~gt~e~i~~~~~~~l~~---g~~Il~~Gc~i~~~tp---~env~a~v~a~~e 326 (326)
T cd03307 277 QTLLNGTPEDVKAEARKCLED---GVDILAPGCGIAPRTP---LANLKAMVEARKE 326 (326)
T ss_pred HHhcCCCHHHHHHHHHHHHHc---cCCEecCcCCCCCCCC---HHHHHHHHHHHhC
Confidence 55668999999999999985 3479999999998888 8999999999873
No 45
>PRK00115 hemE uroporphyrinogen decarboxylase; Validated
Probab=99.50 E-value=7.2e-13 Score=146.93 Aligned_cols=191 Identities=14% Similarity=0.137 Sum_probs=147.2
Q ss_pred CCCceeeechHHHHhhccccc----C----------C-CChHHHHHHHHHHHHHHHHHHHHcCCcEEEEcCcccccCCCC
Q 003819 579 KRPMKGMLTGPVTILNWSFVR----N----------D-QPRFETCYQIALAIKDEVEDLEKAGITVIQIDEAALREGLPL 643 (793)
Q Consensus 579 ~kpvK~~LtGPvTll~~s~~~----~----------~-~~~~e~~~~lA~al~~ev~~L~~aGv~~IQIDEPal~~~l~l 643 (793)
+.|+-+.+.||+|++...... + + ....++++.+++.+.+.++.+.++|+++|||-||. ...+
T Consensus 137 ~~~vig~v~gP~Tla~~l~~~~~~~~~~~~~~~~~~~Pe~v~~ll~~~t~~~~~~~~~~~eaGad~i~i~d~~-~~~l-- 213 (346)
T PRK00115 137 EVPLIGFAGAPWTLATYMVEGGGSKDYAKTKAMMYAEPELLHALLDKLADATIAYLNAQIEAGAQAVQIFDSW-AGAL-- 213 (346)
T ss_pred CceEEeeCCcHHHHHHHHHcCCCCccHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEecCc-cccC--
Confidence 378999999999999754320 0 0 12235666677778888888899999999999993 3332
Q ss_pred CcccHHHHHHHHHHHHHHHhcCCCCC--CeEEEEeCCCCchhHHHHHHcCCCcEEEEecCCCChhhHHHhhhcccCCCeE
Q 003819 644 RKSEQDFYLKWAVHSFRITNCGVQDT--TQVHTHMCYSNFNDIIHSIMDMDADVITIENSRSDEKLLSVFREGVKYRAGI 721 (793)
Q Consensus 644 ~~~~~~~~l~~av~a~~~~~~~v~~~--~~I~lH~C~g~~~~i~~~l~~l~~D~isiE~~r~~~~~L~~~~~~~~~~~~i 721 (793)
+++.|.+++.+.++++++.++.. ...++|+| |+...+++.+.++++|++|++...+ ++..++ .-.++..
T Consensus 214 ---sp~~f~ef~~P~~k~i~~~i~~~~~~~~ilh~c-g~~~~~~~~~~~~~~~~is~d~~~d----l~~~k~-~~g~~~~ 284 (346)
T PRK00115 214 ---SPADYREFVLPYMKRIVAELKREHPDVPVILFG-KGAGELLEAMAETGADVVGLDWTVD----LAEARR-RVGDKKA 284 (346)
T ss_pred ---CHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEc-CCcHHHHHHHHhcCCCEEeeCCCCC----HHHHHH-HcCCCeE
Confidence 46788899999988888887632 23578999 6778899999999999999997653 222232 1113479
Q ss_pred eeeeecCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEcCCCCCCCCChhHHHHHHHHHHHHHHHH
Q 003819 722 GPGVYDIHSPRIPSTEEIADRINKMLAVLESNILWVNPDCGLKTRKYSEVKPALSNMVAAAKLL 785 (793)
Q Consensus 722 ~~GVvD~~s~~ves~eev~~~i~~al~~i~~~~l~vsPdCGL~t~~~~~~~~kL~~mv~aa~~~ 785 (793)
..|.+|. .....++|+|.+.++++++..+....++||+||+.+-++ .+++++|++|++..
T Consensus 285 i~Gni~p-~ll~gt~e~i~~~~~~~i~~~~~~gfIl~~Gc~i~~~tp---~eNi~a~v~a~~~y 344 (346)
T PRK00115 285 LQGNLDP-AVLLAPPEAIEEEVRAILDGGGGPGHIFNLGHGILPETP---PENVKALVEAVHEL 344 (346)
T ss_pred EEeCCCh-hHhcCCHHHHHHHHHHHHHHhCCCCeeeecCCcCCCCcC---HHHHHHHHHHHHHh
Confidence 9999998 444578999999999999987667899999999998777 79999999999874
No 46
>PLN02433 uroporphyrinogen decarboxylase
Probab=99.46 E-value=2.5e-12 Score=142.53 Aligned_cols=192 Identities=14% Similarity=0.095 Sum_probs=147.5
Q ss_pred CCceeeechHHHHhhcccccC------------CC---ChHHHHHHHHHHHHHHHHHHHHcCCcEEEEcCcccccCCCCC
Q 003819 580 RPMKGMLTGPVTILNWSFVRN------------DQ---PRFETCYQIALAIKDEVEDLEKAGITVIQIDEAALREGLPLR 644 (793)
Q Consensus 580 kpvK~~LtGPvTll~~s~~~~------------~~---~~~e~~~~lA~al~~ev~~L~~aGv~~IQIDEPal~~~l~l~ 644 (793)
.|+-+.+.||+|++....... +. ...++++.+++.+.+.++.+.++|+++|||.+|. ...+
T Consensus 131 v~iig~v~gP~Tla~~l~gg~~~~~~~~~~~~l~~~Pe~v~~ll~~it~~~~~~~~~~ieaGa~~i~i~d~~-~~~l--- 206 (345)
T PLN02433 131 AAVLGFVGAPWTLATYIVEGGSSKNYKVIKKMAFTAPEVLHALLDKLTDAVIEYVDYQIDAGAQVVQIFDSW-AGHL--- 206 (345)
T ss_pred CceeeeCCcHHHHHHHHHcCCCCccHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEecCc-cccC---
Confidence 689999999999997543310 01 1234566677777888888889999999999993 3333
Q ss_pred cccHHHHHHHHHHHHHHHhcCCCC---CCeEEEEeCCCCchhHHHHHHcCCCcEEEEecCCCChhhHHHhhhcccCCCeE
Q 003819 645 KSEQDFYLKWAVHSFRITNCGVQD---TTQVHTHMCYSNFNDIIHSIMDMDADVITIENSRSDEKLLSVFREGVKYRAGI 721 (793)
Q Consensus 645 ~~~~~~~l~~av~a~~~~~~~v~~---~~~I~lH~C~g~~~~i~~~l~~l~~D~isiE~~r~~~~~L~~~~~~~~~~~~i 721 (793)
+++.|.+++.+.++++++.++. ...+.+|+| |+ ..+++.+.++++|++++|...+ ++..++ .-.++.+
T Consensus 207 --sp~~f~ef~~P~~k~i~~~i~~~~~~~~~ilh~c-G~-~~~~~~~~~~~~~~i~~d~~~d----l~e~~~-~~g~~~~ 277 (345)
T PLN02433 207 --SPVDFEEFSKPYLEKIVDEVKARHPDVPLILYAN-GS-GGLLERLAGTGVDVIGLDWTVD----MADARR-RLGSDVA 277 (345)
T ss_pred --CHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEeC-CC-HHHHHHHHhcCCCEEEcCCCCC----HHHHHH-HhCCCeE
Confidence 4678888998888888888753 346899999 65 3789999999999999997653 222222 1113679
Q ss_pred eeeeecCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEcCCCCCCCCChhHHHHHHHHHHHHHHHHHHH
Q 003819 722 GPGVYDIHSPRIPSTEEIADRINKMLAVLESNILWVNPDCGLKTRKYSEVKPALSNMVAAAKLLRTQ 788 (793)
Q Consensus 722 ~~GVvD~~s~~ves~eev~~~i~~al~~i~~~~l~vsPdCGL~t~~~~~~~~kL~~mv~aa~~~r~~ 788 (793)
..|.+|. .....|+|+|.+.++++++..+....++||+||+..-++ .+++++|++|++.....
T Consensus 278 l~GNi~p-~ll~gt~e~i~~~v~~~i~~~~~~g~Il~~Gc~i~~~tp---~eNi~a~v~av~~~~~~ 340 (345)
T PLN02433 278 VQGNVDP-AVLFGSKEAIEKEVRDVVKKAGPQGHILNLGHGVLVGTP---EENVAHFFDVARELRYE 340 (345)
T ss_pred EEeCCCc-hhhCCCHHHHHHHHHHHHHHcCCCCeEEecCCCCCCCCC---HHHHHHHHHHHHHhChh
Confidence 9999997 345679999999999999987656699999999998877 79999999999986543
No 47
>TIGR01464 hemE uroporphyrinogen decarboxylase. This model represents uroporphyrinogen decarboxylase (HemE), which converts uroporphyrinogen III to coproporphyrinogen III. This step takes the pathway toward protoporphyrin IX, a common precursor of both heme and chlorophyll, rather than toward precorrin 2 and its products.
Probab=99.45 E-value=2.2e-12 Score=142.63 Aligned_cols=187 Identities=13% Similarity=0.173 Sum_probs=142.8
Q ss_pred CCceeeechHHHHhhcccc-c---C----------CC-ChHHHHHHHHHHHHHHHHHHHHcCCcEEEEcCcccccCCCCC
Q 003819 580 RPMKGMLTGPVTILNWSFV-R---N----------DQ-PRFETCYQIALAIKDEVEDLEKAGITVIQIDEAALREGLPLR 644 (793)
Q Consensus 580 kpvK~~LtGPvTll~~s~~-~---~----------~~-~~~e~~~~lA~al~~ev~~L~~aGv~~IQIDEPal~~~l~l~ 644 (793)
.|+-+.+.||+|++..... . + +. ...++++-+++.+.+.++.+.++|+++|||-||. ...+
T Consensus 132 ~pi~g~~~gP~Tla~~l~~g~~~~~~~~~~~~~~~~Pe~v~~ll~~~t~~~~~~~~~~~eaGad~i~i~d~~-~~~l--- 207 (338)
T TIGR01464 132 VPLIGFAGAPWTLASYMIEGGGSKDFAKAKRFMYQEPEVLHALLNKLTDATIEYLVEQVKAGAQAVQIFDSW-AGAL--- 207 (338)
T ss_pred CceEEeCCchHHHHHHHHcCCCCccHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECCc-cccC---
Confidence 7899999999999975442 0 0 00 1234555566677788888888999999999983 3332
Q ss_pred cccHHHHHHHHHHHHHHHhcCCCCC--CeEEEEeCCCCchhHHHHHHcCCCcEEEEecCCCChhhHHHhhhcccCC-CeE
Q 003819 645 KSEQDFYLKWAVHSFRITNCGVQDT--TQVHTHMCYSNFNDIIHSIMDMDADVITIENSRSDEKLLSVFREGVKYR-AGI 721 (793)
Q Consensus 645 ~~~~~~~l~~av~a~~~~~~~v~~~--~~I~lH~C~g~~~~i~~~l~~l~~D~isiE~~r~~~~~L~~~~~~~~~~-~~i 721 (793)
+++.|.+++...++++++.++.. ...++|+| |+...+++.+.++++|++|++...+ ++..++ .++ +..
T Consensus 208 --sp~~f~ef~~p~~k~i~~~i~~~~~~~~ilh~c-g~~~~~~~~~~~~~~~~~s~d~~~d----l~e~~~--~~~~~~~ 278 (338)
T TIGR01464 208 --SPEDFEEFVLPYLKKIIEEVKARLPNVPVILFA-KGAGHLLEELAETGADVVGLDWTVD----LKEARK--RVGPGVA 278 (338)
T ss_pred --CHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEe-CCcHHHHHHHHhcCCCEEEeCCCCC----HHHHHH--HhCCCee
Confidence 46788999999999888887532 23479999 6778899999999999999997653 222222 123 569
Q ss_pred eeeeecCCCCCCCCHHHHHHHHHHHHhhcC-CCcEEEcCCCCCCCCChhHHHHHHHHHHHHHH
Q 003819 722 GPGVYDIHSPRIPSTEEIADRINKMLAVLE-SNILWVNPDCGLKTRKYSEVKPALSNMVAAAK 783 (793)
Q Consensus 722 ~~GVvD~~s~~ves~eev~~~i~~al~~i~-~~~l~vsPdCGL~t~~~~~~~~kL~~mv~aa~ 783 (793)
..|.+|.... ..++|+|.+.++++++..+ ....++||+||+.+-++ .+++++|++|++
T Consensus 279 i~Gni~p~~l-~gt~e~i~~~v~~~l~~~~~~~g~Il~~Gc~i~~~tp---~eni~a~v~a~~ 337 (338)
T TIGR01464 279 IQGNLDPAVL-YAPEEALEEKVEKILEAFGGKSRYIFNLGHGILPDTP---PENVKALVEYVH 337 (338)
T ss_pred EEeCCChHHh-cCCHHHHHHHHHHHHHHhccCCCceecCCCcCCCCcC---HHHHHHHHHHHh
Confidence 9999998544 6799999999999999863 45689999999998888 789999999986
No 48
>cd00717 URO-D Uroporphyrinogen decarboxylase (URO-D) is a dimeric cytosolic enzyme that decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, without requiring any prosthetic groups or cofactors. This reaction is located at the branching point of the tetrapyrrole biosynthetic pathway, leading to the biosynthesis of heme, chlorophyll or bacteriochlorophyll. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP).
Probab=99.45 E-value=1.9e-12 Score=142.99 Aligned_cols=188 Identities=14% Similarity=0.149 Sum_probs=143.4
Q ss_pred CCceeeechHHHHhhcccc----cC----------C-CChHHHHHHHHHHHHHHHHHHHHcCCcEEEEcCcccccCCCCC
Q 003819 580 RPMKGMLTGPVTILNWSFV----RN----------D-QPRFETCYQIALAIKDEVEDLEKAGITVIQIDEAALREGLPLR 644 (793)
Q Consensus 580 kpvK~~LtGPvTll~~s~~----~~----------~-~~~~e~~~~lA~al~~ev~~L~~aGv~~IQIDEPal~~~l~l~ 644 (793)
+|+-+.+.||+|++..... ++ + ....++++-+++.+.+.++.+.++|+++||+-+|. ...+
T Consensus 129 ~~i~g~v~gP~Tla~~l~~~~~~~~~~~~~~~l~~~Pe~v~~~l~~it~~~~~~~~~~ieaGad~i~i~d~~-~~~l--- 204 (335)
T cd00717 129 VPLIGFAGAPWTLASYMIEGGGSKDFAKAKKMMYTDPEAFHALLDKLTDATIEYLKAQIEAGAQAVQIFDSW-AGAL--- 204 (335)
T ss_pred ceEEeecCCHHHHHHHHHCCCCCccHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCcc-cccC---
Confidence 6889999999999975432 10 0 01234555677777888888888999999999994 3222
Q ss_pred cccHHHHHHHHHHHHHHHhcCCCCC--CeEEEEeCCCCchhHHHHHHcCCCcEEEEecCCCChhhHHHhhhcccCCCeEe
Q 003819 645 KSEQDFYLKWAVHSFRITNCGVQDT--TQVHTHMCYSNFNDIIHSIMDMDADVITIENSRSDEKLLSVFREGVKYRAGIG 722 (793)
Q Consensus 645 ~~~~~~~l~~av~a~~~~~~~v~~~--~~I~lH~C~g~~~~i~~~l~~l~~D~isiE~~r~~~~~L~~~~~~~~~~~~i~ 722 (793)
+++.|.+++.+.++++++.++.. ....+|+| |+...+++.+.++++|++|++...+ +...++ .-.++.+.
T Consensus 205 --sp~~f~ef~~P~~k~i~~~i~~~~~~~~ilh~c-g~~~~~~~~~~~~~~~~~s~d~~~d----l~e~k~-~~g~~~~i 276 (335)
T cd00717 205 --SPEDFEEFVLPYLKRIIEEVKKRLPGVPVILFA-KGAGGLLEDLAQLGADVVGLDWRVD----LDEARK-RLGPKVAL 276 (335)
T ss_pred --CHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEc-CCCHHHHHHHHhcCCCEEEeCCCCC----HHHHHH-HhCCCeEE
Confidence 46788899999999888887642 23479999 4556899999999999999997652 222332 11136799
Q ss_pred eeeecCCCCCCCCHHHHHHHHHHHHhhcCC-CcEEEcCCCCCCCCChhHHHHHHHHHHHHHH
Q 003819 723 PGVYDIHSPRIPSTEEIADRINKMLAVLES-NILWVNPDCGLKTRKYSEVKPALSNMVAAAK 783 (793)
Q Consensus 723 ~GVvD~~s~~ves~eev~~~i~~al~~i~~-~~l~vsPdCGL~t~~~~~~~~kL~~mv~aa~ 783 (793)
.|.+|.. ....++|+|.+.++++++..+. ...++||+||+..-++ .+++++|++|++
T Consensus 277 ~Gni~p~-~l~~~~e~i~~~v~~~l~~~~~~~gfIl~~gc~i~~~tp---~eNi~a~v~a~~ 334 (335)
T cd00717 277 QGNLDPA-LLYAPKEAIEKEVKRILKAFGGAPGHIFNLGHGILPDTP---PENVKALVEAVH 334 (335)
T ss_pred EeCCChh-hhcCCHHHHHHHHHHHHHHhCcCCCceeecCCcCCCCcC---HHHHHHHHHHHh
Confidence 9999984 4567889999999999998754 6899999999988877 789999999986
No 49
>PF01208 URO-D: Uroporphyrinogen decarboxylase (URO-D); InterPro: IPR000257 Uroporphyrinogen decarboxylase (URO-D), the fifth enzyme of the haem biosynthetic pathway, catalyses the sequential decarboxylation of the four acetyl side chains of uroporphyrinogen to yield coproporphyrinogen []. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP). The sequence of URO-D has been well conserved throughout evolution. The best conserved region is located in the N-terminal section; it contains a perfectly conserved hexapeptide. There are two arginine residues in this hexapeptide which could be involved in the binding, via salt bridges, to the carboxyl groups of the propionate side chains of the substrate. The crystal structure of human uroporphyrinogen decarboxylase shows it as comprised of a single domain containing a (beta/alpha)8-barrel with a deep active site cleft formed by loops at the C-terminal ends of the barrel strands. URO-D is a dimer in solution. Dimerisation juxtaposes the active site clefts of the monomers, suggesting a functionally important interaction between the catalytic centres [].; GO: 0004853 uroporphyrinogen decarboxylase activity, 0006779 porphyrin-containing compound biosynthetic process; PDB: 4EXQ_A 2INF_C 1J93_A 3GW0_A 1R3Q_A 1JPH_A 1JPI_A 3GVR_A 3GVW_A 3GVV_A ....
Probab=99.39 E-value=2.2e-12 Score=142.59 Aligned_cols=269 Identities=18% Similarity=0.237 Sum_probs=168.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcccCCCCccchhHHHHHhhccC-ceeeccceeeecCCccccCcEEE-cc---CCCC
Q 003819 489 DDYVKTIKEEINNVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSG-FAFTVNGWVQSYGSRCVKPPIIY-GD---VSRP 563 (793)
Q Consensus 489 ~~~~~~~~~~i~~~i~~Q~~~Gldvi~~Ge~~r~d~v~~f~e~l~G-~~~~~~g~v~~~~~~~~~~P~i~-g~---v~~~ 563 (793)
.++..--+...+..++.+++.|.|.+.-. .|. .+.++.+.+ +.+..++. -.+..|++. .| +..+
T Consensus 43 ~~~~~~~~~~ae~~~~~~~~~~~D~~~~~----~d~-~~~aea~G~~v~~~~~~~------P~~~~~~~~~eD~~~l~~~ 111 (343)
T PF01208_consen 43 PEYCRDPEKMAEAQIKAYEKFGPDFIKIP----FDL-TVEAEALGCEVEFPEDDG------PSVEEPIISPEDLDKLKIP 111 (343)
T ss_dssp HHHCTSHHHHHHHHHHHHHHC--SEEE-S------T-THHHHGCTTEEEEETTTE------EEESS---SHHHHHTS--G
T ss_pred HHHhcCHHHHHHHHHHHHHhcCCCEEEec----Cce-eehHHHcCCeEEecCCCC------CccccCcCCHHHHhhhccc
Confidence 33333334455567788999999988665 344 455666643 11111110 011222221 11 2222
Q ss_pred CCc-------chhHHHHHHhcC--CCCceeeechHHHHhhccc---ccCC--------C-ChHHHHHHHHHHHHHHHHHH
Q 003819 564 KAM-------TVFWSSMAQSMT--KRPMKGMLTGPVTILNWSF---VRND--------Q-PRFETCYQIALAIKDEVEDL 622 (793)
Q Consensus 564 ~~~-------~~~~~~~aq~~t--~kpvK~~LtGPvTll~~s~---~~~~--------~-~~~e~~~~lA~al~~ev~~L 622 (793)
.+. .++.++.++... +.|+-+.+.||+|++.+.. .... . ...++++.+++.+.+.++.+
T Consensus 112 ~~~~~~~~~~~leai~~l~~~~~~~~~v~~~~~gP~t~a~~l~~~~g~e~~~~~~~~~Pe~v~~ll~~~~~~~~~~~~~~ 191 (343)
T PF01208_consen 112 DPENEGRLPEVLEAIKILKEELGDDVPVIGTVFGPFTLASDLMEGRGFEEFLMDLYDDPEKVHELLDKITDFIIEYAKAQ 191 (343)
T ss_dssp GHHH-HHTHHHHHHHHHHHHHTTTSSEEEEEEE-HHHHHHHHHHSSS-HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchhhhHHHHHHHHHHHHHHhcCcEEEEecCchHHHHHHHHHcCCCHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHH
Confidence 221 223344444322 4689999999999998877 4221 1 23467777888888899999
Q ss_pred HHcCCcEEEEcCcccccCCCCCcccHHHHHHHHHHHHHHHhcCCCC-CC-eEEEEeCCCCchhHHHHHHcCCCcEEEEec
Q 003819 623 EKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQD-TT-QVHTHMCYSNFNDIIHSIMDMDADVITIEN 700 (793)
Q Consensus 623 ~~aGv~~IQIDEPal~~~l~l~~~~~~~~l~~av~a~~~~~~~v~~-~~-~I~lH~C~g~~~~i~~~l~~l~~D~isiE~ 700 (793)
.++|+++|++-+ +....+ +++.|.++..+.++++.+.++. .. .+.+|+| |+...+++.+.++++|+++++.
T Consensus 192 ~~~G~d~i~~~d-~~~~~i-----sp~~f~e~~~P~~k~i~~~i~~~g~~~~~lH~c-G~~~~~~~~l~~~g~d~~~~~~ 264 (343)
T PF01208_consen 192 IEAGADGIFIFD-SSGSLI-----SPEMFEEFILPYLKKIIDAIKEAGKDPVILHIC-GNTTPILDDLADLGADVLSVDE 264 (343)
T ss_dssp HHTT-SEEEEEE-TTGGGS------HHHHHHHTHHHHHHHHHHHHHHETE-EEEEET-THG-GGHHHHHTSS-SEEEE-T
T ss_pred HHhCCCcccccc-cccCCC-----CHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEC-CchHHHHHHHHhcCCCEEEEcC
Confidence 999999999988 333332 4678888999999998888863 23 6899999 8988999999999999999985
Q ss_pred CCCCh-hhHHHhhhcccCCCeEeeeeecCCCCCCCCHHHHHHHHHHHHhh--cCCCcEEEcCCCCCCCCChhHHHHHHHH
Q 003819 701 SRSDE-KLLSVFREGVKYRAGIGPGVYDIHSPRIPSTEEIADRINKMLAV--LESNILWVNPDCGLKTRKYSEVKPALSN 777 (793)
Q Consensus 701 ~r~~~-~~L~~~~~~~~~~~~i~~GVvD~~s~~ves~eev~~~i~~al~~--i~~~~l~vsPdCGL~t~~~~~~~~kL~~ 777 (793)
.. +. +..+.+ + ++.+..|.+|..+....|+|+|.+.++++++. -+....+++|+|++..-++ .++|++
T Consensus 265 ~~-~~~~~~~~~----~-~~~~l~Gni~~~~~l~gt~eei~~~v~~~i~~~~~~~~gfIl~~gc~ip~~~p---~eni~a 335 (343)
T PF01208_consen 265 KV-DLAEAKRKL----G-DKIVLMGNIDPVSLLFGTPEEIEEEVKRLIEEGLAGGGGFILSPGCGIPPDTP---PENIKA 335 (343)
T ss_dssp TS--HHHHHHHH----T-TSSEEEEEB-G-GGGGS-HHHHHHHHHHHHHHTHCTSSSEEBEBSS---TTS----HHHHHH
T ss_pred CC-CHHHHHHHh----C-CCeEEECCCCccccccCCHHHHHHHHHHHHHHhcCCCCCEEEeCCCcCCCCcC---HHHHHH
Confidence 54 33 323322 2 57899999999544339999999999999993 4578999999999988777 899999
Q ss_pred HHHHHHH
Q 003819 778 MVAAAKL 784 (793)
Q Consensus 778 mv~aa~~ 784 (793)
|++|+++
T Consensus 336 ~~~a~~e 342 (343)
T PF01208_consen 336 MVEAVKE 342 (343)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9999985
No 50
>cd03308 CmuA_CmuC_like CmuA_CmuC_like: uncharacterized protein family similar to uroporphyrinogen decarboxylase (URO-D) and the methyltransferases CmuA and CmuC.
Probab=99.14 E-value=5.9e-10 Score=125.11 Aligned_cols=193 Identities=10% Similarity=0.078 Sum_probs=140.7
Q ss_pred CCceeeechHHH-Hhhccccc--------CC-CChHHHHHHHHHHHHHHHHHHHHcCCcE-EEEcCcccccCCCCCcccH
Q 003819 580 RPMKGMLTGPVT-ILNWSFVR--------ND-QPRFETCYQIALAIKDEVEDLEKAGITV-IQIDEAALREGLPLRKSEQ 648 (793)
Q Consensus 580 kpvK~~LtGPvT-ll~~s~~~--------~~-~~~~e~~~~lA~al~~ev~~L~~aGv~~-IQIDEPal~~~l~l~~~~~ 648 (793)
.|+-+.++||+| ++....+- .+ ....++++.+++...+.++...++|++. |.+..|.-..++ -++
T Consensus 171 vpi~~~~~gPf~~la~~l~g~~~~~~~l~~~Pe~v~~ll~~~td~~i~~~~~~ieaGa~~~i~i~~~~s~~~~----lsp 246 (378)
T cd03308 171 LNAGGVSEAPFDIIGDYLRGFKGISIDLRRRPEKVAEACEAVTPLMIKMGTATAPAPYPGPVFTPIPLHLPPF----LRP 246 (378)
T ss_pred cccceeEeCChHHHHHHHhCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEecccccCc----cCH
Confidence 689999999997 66443321 11 1234566777888888888899999994 555555433221 246
Q ss_pred HHHHHHHHHHHHHHhcCCCC-CCeEEEEeCCCCchhHHHHHHcCCCc-EEEEecCCCChhhHHHhhhcccCCCeEeeeee
Q 003819 649 DFYLKWAVHSFRITNCGVQD-TTQVHTHMCYSNFNDIIHSIMDMDAD-VITIENSRSDEKLLSVFREGVKYRAGIGPGVY 726 (793)
Q Consensus 649 ~~~l~~av~a~~~~~~~v~~-~~~I~lH~C~g~~~~i~~~l~~l~~D-~isiE~~r~~~~~L~~~~~~~~~~~~i~~GVv 726 (793)
+.|.+++.+.++++++.++. ...+.+|+| |+...+++.+.+++++ +++++... ++ +..++ .-.++....|.+
T Consensus 247 ~~f~ef~~P~~k~i~~~i~~~g~~~ilh~c-G~~~~~l~~l~~~g~~~v~~~~~~~-dl---~~ak~-~~g~~~~i~GNl 320 (378)
T cd03308 247 KQFEKFYWPSFKKVVEGLAARGQRIFLFFE-GDWERYLEYLQELPKGKTVGLFEYG-DP---KKVKE-KLGDKKCIAGGF 320 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCEEEEcC-CCcHHHHHHHHhcCCCcEEEcCCCC-CH---HHHHH-HhCCCEEEEcCC
Confidence 88999999999999988863 357899999 8988999999999998 55554332 33 22232 112367999999
Q ss_pred cCCCCCCCCHHHHHHHHHHHHhhcC-CCcEEEcCCCCCCCCChhHHHHHHHHHHHHHH
Q 003819 727 DIHSPRIPSTEEIADRINKMLAVLE-SNILWVNPDCGLKTRKYSEVKPALSNMVAAAK 783 (793)
Q Consensus 727 D~~s~~ves~eev~~~i~~al~~i~-~~~l~vsPdCGL~t~~~~~~~~kL~~mv~aa~ 783 (793)
|.......++|+|.+.++++++..+ ....++||+||+.+.++. -.+++++|++|++
T Consensus 321 ~p~~L~~Gt~e~i~~~v~~~l~~~~~~~gfIl~~gcgi~p~tp~-~~eNi~a~v~av~ 377 (378)
T cd03308 321 PTTLLKYGTPEECIDYVKELLDTLAPGGGFIFGTDKPIISADDA-KPENLIAVIEFVR 377 (378)
T ss_pred CCHHHhcCCHHHHHHHHHHHHHHhCCCCCEEEeCCCcCCCCCCC-ChHHHHHHHHHHh
Confidence 9874444699999999999999876 467999999999875531 1488899999886
No 51
>COG0407 HemE Uroporphyrinogen-III decarboxylase [Coenzyme metabolism]
Probab=99.04 E-value=5.2e-09 Score=115.02 Aligned_cols=192 Identities=14% Similarity=0.137 Sum_probs=144.9
Q ss_pred CCceeeechHHHHhhcccc----cC-----------CCChHHHHHHHHHHHHHHHHHHHHcCCcEEEEcCcccccCCCCC
Q 003819 580 RPMKGMLTGPVTILNWSFV----RN-----------DQPRFETCYQIALAIKDEVEDLEKAGITVIQIDEAALREGLPLR 644 (793)
Q Consensus 580 kpvK~~LtGPvTll~~s~~----~~-----------~~~~~e~~~~lA~al~~ev~~L~~aGv~~IQIDEPal~~~l~l~ 644 (793)
.|+-|-.-||+|++..... ++ -.....+++-++++..+.++...++|++.|||.+..-. .+.
T Consensus 141 ~pLIgf~gsP~TlAsymieg~~s~~~~~~k~~m~~~P~~~~~ll~kltd~~i~Yl~~qi~aGAdavqifDsW~g-~l~-- 217 (352)
T COG0407 141 VPLIGFAGSPWTLASYLIEGGGSKDFSKTKAMMYTEPDAVHALLDKLTDAVIEYLKAQIEAGADAVQIFDSWAG-VLS-- 217 (352)
T ss_pred CCeEEecCCHHHHHHHHHcCCCcccHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeeccccc-cCC--
Confidence 6899999999999964332 11 01234677778889999999999999999999998633 332
Q ss_pred cccHHHHHHHHHHHHHHHhcCCCC--CCeEEEEeCCCCchhHHHHHHcCCCcEEEEecCCCChhhHHHhhhcccCCCeEe
Q 003819 645 KSEQDFYLKWAVHSFRITNCGVQD--TTQVHTHMCYSNFNDIIHSIMDMDADVITIENSRSDEKLLSVFREGVKYRAGIG 722 (793)
Q Consensus 645 ~~~~~~~l~~av~a~~~~~~~v~~--~~~I~lH~C~g~~~~i~~~l~~l~~D~isiE~~r~~~~~L~~~~~~~~~~~~i~ 722 (793)
..+|.+++.+...+..+.++. ....++|.| ++....++.+.+.++|++|+|-..+ ++..++ ...++...
T Consensus 218 ---~~~~~~f~~~~~~~i~~~vk~~~~~~pii~f~-~ga~~~l~~m~~~g~d~l~vdw~v~----l~~a~~-~~~~~~~l 288 (352)
T COG0407 218 ---MIDYDEFVLPYMKRIVREVKEVKGGVPVIHFC-KGAGHLLEDMAKTGFDVLGVDWRVD----LKEAKK-RLGDKVAL 288 (352)
T ss_pred ---cccHHHHhhhHHHHHHHHHHHhCCCCcEEEEC-CCcHHHHHHHHhcCCcEEeeccccC----HHHHHH-HhCCCceE
Confidence 234777777777777666652 213589999 6677899999999999999996664 332222 11123588
Q ss_pred eeeecCCCCCCCCHHHHHHHHHHHHhhcC-CCcEEEcCCCCCCCCChhHHHHHHHHHHHHHHHHHH
Q 003819 723 PGVYDIHSPRIPSTEEIADRINKMLAVLE-SNILWVNPDCGLKTRKYSEVKPALSNMVAAAKLLRT 787 (793)
Q Consensus 723 ~GVvD~~s~~ves~eev~~~i~~al~~i~-~~~l~vsPdCGL~t~~~~~~~~kL~~mv~aa~~~r~ 787 (793)
-|.+|. .....+++.|++.++++++... .+.-+.|++||+.+.++ .++++.||++++....
T Consensus 289 qGNldP-~lL~~~~~~i~~~~~~iL~~~~~~~~~IfnlGhGI~P~tp---~e~v~~lve~v~~~~~ 350 (352)
T COG0407 289 QGNLDP-ALLYAPPEAIKEEVKRILEDGGDGSGYIFNLGHGILPETP---PENVKALVEAVHEYSR 350 (352)
T ss_pred EeccCh-HhhcCCHHHHHHHHHHHHHHhccCCCceecCCCCcCCCCC---HHHHHHHHHHHHHhcc
Confidence 899999 7777899999999999998754 35899999999998888 7899999999987643
No 52
>cd03309 CmuC_like CmuC_like. Proteins similar to the putative corrinoid methyltransferase CmuC. Its function has been inferred from sequence similarity to the methyltransferases CmuA and MtaA. Mutants of Methylobacterium sp. disrupted in cmuC and purU appear deficient in some step of chloromethane metabolism.
Probab=99.00 E-value=9.6e-09 Score=112.69 Aligned_cols=186 Identities=12% Similarity=0.090 Sum_probs=134.6
Q ss_pred ceeeechHHHHhhccccc--------CC-CChHHHHHHHHHHHHHHHHHHHHc-CCcEEEEcCcccccCCCCCcccHHHH
Q 003819 582 MKGMLTGPVTILNWSFVR--------ND-QPRFETCYQIALAIKDEVEDLEKA-GITVIQIDEAALREGLPLRKSEQDFY 651 (793)
Q Consensus 582 vK~~LtGPvTll~~s~~~--------~~-~~~~e~~~~lA~al~~ev~~L~~a-Gv~~IQIDEPal~~~l~l~~~~~~~~ 651 (793)
.-....||+|++.....- .+ ....++++.+++.+.+.++...++ |+++||+-++.-...-++ -+++.|
T Consensus 115 ~~~~~~Gpf~~a~~l~g~e~~~~~l~~~PE~v~~lld~ltd~~i~y~~~qiea~Gad~I~i~Ddwa~~~~~~--LSpe~f 192 (321)
T cd03309 115 DVPLPGGVFERFRLRMSMEDALMALYEEPEAAHELFDYLTDAKLKLYERRIKHLEPDLLVYHDDLGSQKGSF--ISPATF 192 (321)
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCCccccCCc--cCHHHH
Confidence 345788999988754421 11 134467777888888888888888 999999976543221111 246788
Q ss_pred HHHHHHHHHHHhcCCCC--CCeEEEEeCCCCchhHHHHHHcCCCcEEEEecCCCChhhHHHhhhcccCCCeEeeeeecCC
Q 003819 652 LKWAVHSFRITNCGVQD--TTQVHTHMCYSNFNDIIHSIMDMDADVITIENSRSDEKLLSVFREGVKYRAGIGPGVYDIH 729 (793)
Q Consensus 652 l~~av~a~~~~~~~v~~--~~~I~lH~C~g~~~~i~~~l~~l~~D~isiE~~r~~~~~L~~~~~~~~~~~~i~~GVvD~~ 729 (793)
.+++.+.++++++.++. ...+.+|.| |+...+++.+.++++|+++++....++ ..+++ .-.++....|.+|..
T Consensus 193 ~efv~P~~krIi~~ik~~~g~piilH~c-G~~~~~l~~~~e~g~dvl~~d~~~~dl---~eak~-~~g~k~~l~GNlDp~ 267 (321)
T cd03309 193 REFILPRMQRIFDFLRSNTSALIVHHSC-GAAASLVPSMAEMGVDSWNVVMTANNT---AELRR-LLGDKVVLAGAIDDV 267 (321)
T ss_pred HHHHHHHHHHHHHHHHhccCCceEEEeC-CCcHHHHHHHHHcCCCEEEecCCCCCH---HHHHH-HhCCCeEEEcCCChH
Confidence 89999999998888763 246899999 887789999999999999999654333 22332 111367899999986
Q ss_pred CCCCCC-HHHHHHHHHHHHhhcCC-CcEEEcCCCCCCCCChhHHHHH
Q 003819 730 SPRIPS-TEEIADRINKMLAVLES-NILWVNPDCGLKTRKYSEVKPA 774 (793)
Q Consensus 730 s~~ves-~eev~~~i~~al~~i~~-~~l~vsPdCGL~t~~~~~~~~k 774 (793)
....++ +|++.+.++++++.+++ ...+.+|+|++-.....+...+
T Consensus 268 ~L~~~~t~E~i~~~v~~~l~~~g~~~~fIf~~~~~~~~~~~~~~~~~ 314 (321)
T cd03309 268 ALDTATWPEEDARGVAKAAAECAPIHPFISAPTAGLPFSIFPEVLRR 314 (321)
T ss_pred HhcCCCCHHHHHHHHHHHHHHhCCCCCEEeCccCCCCcccCHHHHHH
Confidence 555554 89999999999999887 8999999999976555444333
No 53
>cd03465 URO-D_like The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane.
Probab=98.95 E-value=1.7e-08 Score=110.99 Aligned_cols=174 Identities=16% Similarity=0.192 Sum_probs=129.3
Q ss_pred CCCceEeehHHHHhhhccCCCCc--CCCCCH---HHHHHHHHHHHHHHHHHHHHCCCCEEEeeccccccCC-ChH-HHHH
Q 003819 149 METVPVLVGPVSYLLLSKPAKGV--EKSFSL---LSLIDKIIPVYKEVVAELKAAGATWIQFDEPTLVLDL-DSH-KLQA 221 (793)
Q Consensus 149 ~~~K~vl~GP~T~l~ls~~~~~~--~~~~~~---~~ll~~L~~~Y~~~l~~L~~aG~~~VQiDEP~L~~d~-~~~-~~~~ 221 (793)
.+++..+.||+|++......+.. .-..++ .++++.+++...+.++.+.++|+..||++||...... +.+ ..+.
T Consensus 126 ~~v~g~~~gP~t~a~~l~g~~~~~~~~~~~pe~~~~~l~~i~~~~~~~~~~~~~~G~d~i~i~d~~~~~~~isp~~f~e~ 205 (330)
T cd03465 126 VPVIGAVGGPFTLASLLMGASKFLMLLYTDPELVHKLLEKCTEFIIRYADALIEAGADGIYISDPWASSSILSPEDFKEF 205 (330)
T ss_pred eeeeccCCCHHHHHHHHHhHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCccccCCCCHHHHHHH
Confidence 56789999999998532211000 001134 6788889989999999999999999999999876543 433 3333
Q ss_pred ----HHHHHHHHHhccCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEEeccCCCChhhHhhhCCCCCEEEEEEeeCC-
Q 003819 222 ----FSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLIRGTKTLDLIKTEFPLGKYLFAGVVDGR- 296 (793)
Q Consensus 222 ----~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~lp~Vd~l~lD~~~~~~~l~~l~~~~p~~k~l~lGvVdgr- 296 (793)
+++.++.+... +..+.+|.| |+. .+.++.+.+++ +|.+++|... ++..+++.++ ++....|-||..
T Consensus 206 ~~p~~k~i~~~i~~~--g~~~~lH~c-G~~-~~~~~~l~~~~-~d~~~~d~~~---dl~~~~~~~g-~~~~i~G~id~~~ 276 (330)
T cd03465 206 SLPYLKKVFDAIKAL--GGPVIHHNC-GDT-APILELMADLG-ADVFSIDVTV---DLAEAKKKVG-DKACLMGNLDPID 276 (330)
T ss_pred hhHHHHHHHHHHHHc--CCceEEEEC-CCc-hhHHHHHHHhC-CCeEeecccC---CHHHHHHHhC-CceEEEeCcChHH
Confidence 34444444331 357899999 888 78899999999 9999998764 5666666454 467888999887
Q ss_pred CCCCCCHHHHHHHHHHHhhhcCC--CcEEEeCCCCCc
Q 003819 297 NIWANDLASSLTTLQDLAGTVGK--DKVVVSTSCSLL 331 (793)
Q Consensus 297 n~w~ed~~~i~~~i~~~~~~v~~--e~l~vspsCgL~ 331 (793)
.....+.+++.+.++++++.++. .+.+++|.|++.
T Consensus 277 ~l~~gt~eei~~~v~~~l~~~~~~~~~~il~~gc~i~ 313 (330)
T cd03465 277 VLLNGSPEEIKEEVKELLEKLLKGGGGYILSSGCEIP 313 (330)
T ss_pred hhcCCCHHHHHHHHHHHHHHHhCCCCCEEEeCCCCCC
Confidence 67788999999999999998765 679999999975
No 54
>PRK06252 methylcobalamin:coenzyme M methyltransferase; Validated
Probab=98.64 E-value=6e-07 Score=99.40 Aligned_cols=185 Identities=14% Similarity=0.169 Sum_probs=125.9
Q ss_pred hHHHHHHHHHc-C--CCCceEeehHHHHhhhccCCCCcC--CCCCH---HHHHHHHHHHHHHHHHHHHHCCCCEEEeecc
Q 003819 137 AVQEYKEAKAL-G--METVPVLVGPVSYLLLSKPAKGVE--KSFSL---LSLIDKIIPVYKEVVAELKAAGATWIQFDEP 208 (793)
Q Consensus 137 ~~~e~~~a~~~-g--~~~K~vl~GP~T~l~ls~~~~~~~--~~~~~---~~ll~~L~~~Y~~~l~~L~~aG~~~VQiDEP 208 (793)
.++..+..++. + +++...+.||+|++......+.+. -..++ .++++.+.+...+.++.+.++|++.||++||
T Consensus 123 ~leai~~l~~~~~~~~pv~g~v~gP~Tla~~l~g~~~~~~~l~~~pe~~~~ll~~i~~~~~~~~~~~~~aGad~I~i~d~ 202 (339)
T PRK06252 123 VLEAIKILKEKVGEEVPIIAGLTGPISLASSLMGPKNFLKWLIKKPELAHEFLDFVTDFCIEYAKAQLEAGADVICIADP 202 (339)
T ss_pred HHHHHHHHHHHcCCcCceeCccCChHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCC
Confidence 34444444432 3 677899999999975211100100 00123 3457777778888889999999999999999
Q ss_pred ccccC-CChHH-HHHHHHHHHHHHhccCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEEeccCCCChhhHhhhCCCCC
Q 003819 209 TLVLD-LDSHK-LQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLIRGTKTLDLIKTEFPLGK 286 (793)
Q Consensus 209 ~L~~d-~~~~~-~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~lp~Vd~l~lD~~~~~~~l~~l~~~~p~~k 286 (793)
.-..+ ++.+. .+.....++++.+.......++|.| |+. ...++.+.+++ +|++++|... ++..+++.++ ++
T Consensus 203 ~a~~~~lsp~~f~ef~~p~~~~i~~~i~~~~~ilH~c-G~~-~~~l~~~~~~g-~d~~~~d~~~---dl~~~~~~~g-~~ 275 (339)
T PRK06252 203 SASPELLGPKMFEEFVLPYLNKIIDEVKGLPTILHIC-GDL-TSILEEMADCG-FDGISIDEKV---DVKTAKENVG-DR 275 (339)
T ss_pred CccccccCHHHHHHHHHHHHHHHHHHhccCCcEEEEC-CCc-hHHHHHHHhcC-CCeeccCCCC---CHHHHHHHhC-CC
Confidence 76532 34433 3333444455544322114567878 777 77899999999 9999988643 5666665464 56
Q ss_pred EEEEEEeeC-CCCCCCCHHHHHHHHHHHhhhcCCCcEEEeCCCCCc
Q 003819 287 YLFAGVVDG-RNIWANDLASSLTTLQDLAGTVGKDKVVVSTSCSLL 331 (793)
Q Consensus 287 ~l~lGvVdg-rn~w~ed~~~i~~~i~~~~~~v~~e~l~vspsCgL~ 331 (793)
....|-||. ......+++++.+.++++.+. | ..+++|.||+.
T Consensus 276 ~~i~Gnidp~~~l~~gt~eeI~~~v~~~l~~-g--~~Il~~gcgi~ 318 (339)
T PRK06252 276 AALIGNVSTSFTLLNGTPEKVKAEAKKCLED-G--VDILAPGCGIA 318 (339)
T ss_pred eEEEeccCcHHHhcCCCHHHHHHHHHHHHHc-C--CCEEcCCCCCC
Confidence 788899999 777789999999999999873 3 46999999995
No 55
>TIGR01463 mtaA_cmuA methyltransferase, MtaA/CmuA family. This subfamily is closely related to, yet is distinct from, uroporphyrinogen decarboxylase (EC 4.1.1.37). It includes two isozymes from Methanosarcina barkeri of methylcobalamin--coenzyme M methyltransferase. It also includes a chloromethane utilization protein, CmuA, which transfers the methyl group of chloromethane to a corrinoid protein.
Probab=98.63 E-value=1.2e-06 Score=97.16 Aligned_cols=184 Identities=12% Similarity=0.127 Sum_probs=124.1
Q ss_pred hhHHHHHHHHHc-C--CCCceEeehHHHHhhhccCCCCcC--CCCCH---HHHHHHHHHHHHHHHHHHHHCCCCEEEeec
Q 003819 136 KAVQEYKEAKAL-G--METVPVLVGPVSYLLLSKPAKGVE--KSFSL---LSLIDKIIPVYKEVVAELKAAGATWIQFDE 207 (793)
Q Consensus 136 ~~~~e~~~a~~~-g--~~~K~vl~GP~T~l~ls~~~~~~~--~~~~~---~~ll~~L~~~Y~~~l~~L~~aG~~~VQiDE 207 (793)
..++..+.+++. | ++++..+.||+|++......+... -..++ .++++.+.++..+.++.+.++|+..||+.|
T Consensus 122 ~~l~ai~~l~~~~~~~~pv~g~v~GP~Tla~~l~g~~~~~~~~~~~pe~v~~ll~~i~~~~~~~~~~~~~~Gad~I~i~d 201 (340)
T TIGR01463 122 VVLEAIKILRERYGDTHPIIGPMGGPFTLAQLMIGVSEFLSWISTDPDYAKAVLELALDFVIAYAKAMVEAGADVIAIAD 201 (340)
T ss_pred hHHHHHHHHHHHcCCceeeeCCCCcHHHHHHHHHCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEecC
Confidence 445666666643 3 577888999999875211100000 00122 346777778888888989999999999999
Q ss_pred cccccC-CChHH-H----HHHHHHHHHHHhccCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEEeccCCCChhhHhhh
Q 003819 208 PTLVLD-LDSHK-L----QAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLIRGTKTLDLIKTE 281 (793)
Q Consensus 208 P~L~~d-~~~~~-~----~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~lp~Vd~l~lD~~~~~~~l~~l~~~ 281 (793)
|.-..+ ++.+. . ..+++.++.+... .....+|.| |+. ...++.+.+++ +|++++|... +++..++.
T Consensus 202 p~a~~~~lsp~~f~e~~~p~~k~i~~~i~~~--g~~~ilH~C-G~~-~~~~~~l~~~g-~d~ls~d~~~---~l~~~~~~ 273 (340)
T TIGR01463 202 PFASSDLISPETYKEFGLPYQKRLFAYIKEI--GGITVLHIC-GFT-QPILRDIANNG-CFGFSVDMKP---GMDHAKRV 273 (340)
T ss_pred CccCccccCHHHHHHHHHHHHHHHHHHHHhc--CCceEEEEC-CCc-hhhHHHHHHhC-CCEEeecCCC---CHHHHHHH
Confidence 986432 34332 2 2334444444321 124567888 767 67899999999 9999988754 36555554
Q ss_pred CCCCCEEEEEEeeCC-CCCCCCHHHHHHHHHHHhhhcCCCcEEEeCCCCCc
Q 003819 282 FPLGKYLFAGVVDGR-NIWANDLASSLTTLQDLAGTVGKDKVVVSTSCSLL 331 (793)
Q Consensus 282 ~p~~k~l~lGvVdgr-n~w~ed~~~i~~~i~~~~~~v~~e~l~vspsCgL~ 331 (793)
++ ++.+..|-||.. .....+++++.+.++++.+. .+.+++|.||+.
T Consensus 274 ~g-~~~~i~Gnidp~~ll~~gt~eeI~~~v~~~l~~---~~~Il~~gcgi~ 320 (340)
T TIGR01463 274 IG-GQASLVGNLSPFSTLMNGTPEKVKKLAKEVLYN---GGDIVMPGCDID 320 (340)
T ss_pred cC-CceEEEecCChHHHhcCCCHHHHHHHHHHHHHc---CCeEECCCCCCC
Confidence 54 567879999874 34457999999999998862 468999999995
No 56
>cd03307 Mta_CmuA_like MtaA_CmuA_like family. MtaA/CmuA, also MtsA, or methyltransferase 2 (MT2) MT2-A and MT2-M isozymes, are methylcobamide:Coenzyme M methyltransferases, which play a role in metabolic pathways of methane formation from various substrates, such as methylated amines and methanol. Coenzyme M, 2-mercaptoethylsulfonate or CoM, is methylated during methanogenesis in a reaction catalyzed by three proteins. A methyltransferase methylates the corrinoid cofactor, which is bound to a second polypeptide, a corrinoid protein. The methylated corrinoid protein then serves as a substrate for MT2-A and related enzymes, which methylate CoM.
Probab=98.24 E-value=1.6e-05 Score=87.64 Aligned_cols=185 Identities=13% Similarity=0.168 Sum_probs=122.6
Q ss_pred hHHHHHHHHH-cC--CCCceEeehHHHHhhhccCCCCcCC--CCC---HHHHHHHHHHHHHHHHHHHHHCCCCEEEeecc
Q 003819 137 AVQEYKEAKA-LG--METVPVLVGPVSYLLLSKPAKGVEK--SFS---LLSLIDKIIPVYKEVVAELKAAGATWIQFDEP 208 (793)
Q Consensus 137 ~~~e~~~a~~-~g--~~~K~vl~GP~T~l~ls~~~~~~~~--~~~---~~~ll~~L~~~Y~~~l~~L~~aG~~~VQiDEP 208 (793)
.++..+..++ +| +++-..+.||+|++......+.+.. ..+ -.++++.+.+...+.++.+.++|++.||+.+|
T Consensus 114 v~eai~~l~~~~~~~~pvig~~~gP~Tla~~l~g~~~~~~~~~~~pe~~~~ll~~it~~~~~~~~~~~eaGad~i~i~d~ 193 (326)
T cd03307 114 VLEAIKILKEKYGEEVPVIGGMTGPASLASHLAGVENFLKWLIKKPEKVREFLEFLTEACIEYAKAQLEAGADIITIADP 193 (326)
T ss_pred HHHHHHHHHHHcCCcceeeCCCCCHHHHHHHHHhHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEecCC
Confidence 3444444443 33 5667888999998752111010000 012 23577777777778888889999999999999
Q ss_pred ccccC-CChHHH-HHHHHHHHHHHhccCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEEeccCCCChhhHhhhCCCCC
Q 003819 209 TLVLD-LDSHKL-QAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLIRGTKTLDLIKTEFPLGK 286 (793)
Q Consensus 209 ~L~~d-~~~~~~-~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~lp~Vd~l~lD~~~~~~~l~~l~~~~p~~k 286 (793)
.-..+ ++.+.. +.....++++.+......+++|.| |+. ...++.+.+++ +|++++|... +++..++.++ ++
T Consensus 194 ~a~~~~isp~~f~e~~~p~~k~i~~~i~~~~~ilh~c-G~~-~~~l~~~~~~g-~d~~~~d~~~---dl~e~~~~~g-~~ 266 (326)
T cd03307 194 TASPELISPEFYEEFALPYHKKIVKELHGCPTILHIC-GNT-TPILEYIAQCG-FDGISVDEKV---DVKTAKEIVG-GR 266 (326)
T ss_pred CccccccCHHHHHHHHHHHHHHHHHHHhcCCcEEEEC-CCC-hhHHHHHHHcC-CCeecccccC---CHHHHHHHcC-Cc
Confidence 75433 244433 333334444444321134667777 777 67899999999 9999988643 5666665464 46
Q ss_pred EEEEEEeeCC-CCCCCCHHHHHHHHHHHhhhcCCCcEEEeCCCCCc
Q 003819 287 YLFAGVVDGR-NIWANDLASSLTTLQDLAGTVGKDKVVVSTSCSLL 331 (793)
Q Consensus 287 ~l~lGvVdgr-n~w~ed~~~i~~~i~~~~~~v~~e~l~vspsCgL~ 331 (793)
....|=+|.. -.-..+++++.+.++++.+. | ..++||.||+.
T Consensus 267 ~~i~Gnidp~~~l~~gt~e~i~~~~~~~l~~-g--~~Il~~Gc~i~ 309 (326)
T cd03307 267 AALIGNVSPSQTLLNGTPEDVKAEARKCLED-G--VDILAPGCGIA 309 (326)
T ss_pred eEEEeCCChHHHhcCCCHHHHHHHHHHHHHc-c--CCEecCcCCCC
Confidence 7778999885 56678999999999999875 3 36899999984
No 57
>PF01208 URO-D: Uroporphyrinogen decarboxylase (URO-D); InterPro: IPR000257 Uroporphyrinogen decarboxylase (URO-D), the fifth enzyme of the haem biosynthetic pathway, catalyses the sequential decarboxylation of the four acetyl side chains of uroporphyrinogen to yield coproporphyrinogen []. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP). The sequence of URO-D has been well conserved throughout evolution. The best conserved region is located in the N-terminal section; it contains a perfectly conserved hexapeptide. There are two arginine residues in this hexapeptide which could be involved in the binding, via salt bridges, to the carboxyl groups of the propionate side chains of the substrate. The crystal structure of human uroporphyrinogen decarboxylase shows it as comprised of a single domain containing a (beta/alpha)8-barrel with a deep active site cleft formed by loops at the C-terminal ends of the barrel strands. URO-D is a dimer in solution. Dimerisation juxtaposes the active site clefts of the monomers, suggesting a functionally important interaction between the catalytic centres [].; GO: 0004853 uroporphyrinogen decarboxylase activity, 0006779 porphyrin-containing compound biosynthetic process; PDB: 4EXQ_A 2INF_C 1J93_A 3GW0_A 1R3Q_A 1JPH_A 1JPI_A 3GVR_A 3GVW_A 3GVV_A ....
Probab=98.23 E-value=2.9e-05 Score=86.01 Aligned_cols=189 Identities=15% Similarity=0.147 Sum_probs=117.2
Q ss_pred hhHHHHHHHHHc---CCCCceEeehHHHHhhhcc---CCCCcCC--CCCH---HHHHHHHHHHHHHHHHHHHHCCCCEEE
Q 003819 136 KAVQEYKEAKAL---GMETVPVLVGPVSYLLLSK---PAKGVEK--SFSL---LSLIDKIIPVYKEVVAELKAAGATWIQ 204 (793)
Q Consensus 136 ~~~~e~~~a~~~---g~~~K~vl~GP~T~l~ls~---~~~~~~~--~~~~---~~ll~~L~~~Y~~~l~~L~~aG~~~VQ 204 (793)
..++..+.+++. ..++=..+.||+|++.... ....... +.++ .++++.+.+...+.++.+.++|++.|+
T Consensus 121 ~~leai~~l~~~~~~~~~v~~~~~gP~t~a~~l~~~~g~e~~~~~~~~~Pe~v~~ll~~~~~~~~~~~~~~~~~G~d~i~ 200 (343)
T PF01208_consen 121 EVLEAIKILKEELGDDVPVIGTVFGPFTLASDLMEGRGFEEFLMDLYDDPEKVHELLDKITDFIIEYAKAQIEAGADGIF 200 (343)
T ss_dssp HHHHHHHHHHHHTTTSSEEEEEEE-HHHHHHHHHHSSS-HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHTT-SEEE
T ss_pred HHHHHHHHHHHHhcCcEEEEecCchHHHHHHHHHcCCCHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHhCCCccc
Confidence 344455555542 3455667889999985322 1100000 0022 457888888888889999999999999
Q ss_pred eeccccccCCChHHHH-----HHHHHHHHHHhccCCC-cEEEEeccCCCchhhHHHHhcCCCccEEEEEeccCCCChhhH
Q 003819 205 FDEPTLVLDLDSHKLQ-----AFSDAYSELQSSLSGL-NVLIETYFADVPAETYKILTSLKGVTGFGFDLIRGTKTLDLI 278 (793)
Q Consensus 205 iDEP~L~~d~~~~~~~-----~~~~~y~~l~~~~~~~-~i~l~tyfg~~~~~~~~~l~~lp~Vd~l~lD~~~~~~~l~~l 278 (793)
+-+ ....-++.+..+ .+++.++.+.+. +. .+++|+| |+. ...++.+.+++ +|++++|.. .++...
T Consensus 201 ~~d-~~~~~isp~~f~e~~~P~~k~i~~~i~~~--g~~~~~lH~c-G~~-~~~~~~l~~~g-~d~~~~~~~---~~~~~~ 271 (343)
T PF01208_consen 201 IFD-SSGSLISPEMFEEFILPYLKKIIDAIKEA--GKDPVILHIC-GNT-TPILDDLADLG-ADVLSVDEK---VDLAEA 271 (343)
T ss_dssp EEE-TTGGGS-HHHHHHHTHHHHHHHHHHHHHH--ETE-EEEEET-THG--GGHHHHHTSS--SEEEE-TT---S-HHHH
T ss_pred ccc-cccCCCCHHHHHHHHHHHHHHHHHHHHHh--CCCceEEEEC-Cch-HHHHHHHHhcC-CCEEEEcCC---CCHHHH
Confidence 998 444445554432 234444444432 24 7899999 877 78999999999 999998743 356444
Q ss_pred hhhCCCCCEEEEEEeeCCCCCCCCHHHHHHHHHHHhhh--cCCCcEEEeCCCCCccccccc
Q 003819 279 KTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGT--VGKDKVVVSTSCSLLHTAVDL 337 (793)
Q Consensus 279 ~~~~p~~k~l~lGvVdgrn~w~ed~~~i~~~i~~~~~~--v~~e~l~vspsCgL~hvP~~~ 337 (793)
.+.+. ++.+..|=||....-.-+.+++.+.++++++. -+..+.+++|+|++ |.++
T Consensus 272 ~~~~~-~~~~l~Gni~~~~~l~gt~eei~~~v~~~i~~~~~~~~gfIl~~gc~i---p~~~ 328 (343)
T PF01208_consen 272 KRKLG-DKIVLMGNIDPVSLLFGTPEEIEEEVKRLIEEGLAGGGGFILSPGCGI---PPDT 328 (343)
T ss_dssp HHHHT-TSSEEEEEB-G-GGGGS-HHHHHHHHHHHHHHTHCTSSSEEBEBSS------TTS
T ss_pred HHHhC-CCeEEECCCCccccccCCHHHHHHHHHHHHHHhcCCCCCEEEeCCCcC---CCCc
Confidence 44465 67788999999545559999999999999883 34578999999996 4554
No 58
>PLN02433 uroporphyrinogen decarboxylase
Probab=98.20 E-value=0.00011 Score=81.73 Aligned_cols=186 Identities=14% Similarity=0.162 Sum_probs=122.2
Q ss_pred hhHHHHHHHHHc-C--CCCceEeehHHHHhh-hcc--CCCCcCC-----CCCH---HHHHHHHHHHHHHHHHHHHHCCCC
Q 003819 136 KAVQEYKEAKAL-G--METVPVLVGPVSYLL-LSK--PAKGVEK-----SFSL---LSLIDKIIPVYKEVVAELKAAGAT 201 (793)
Q Consensus 136 ~~~~e~~~a~~~-g--~~~K~vl~GP~T~l~-ls~--~~~~~~~-----~~~~---~~ll~~L~~~Y~~~l~~L~~aG~~ 201 (793)
..++..+..++. | +++=..+.||+|.+. +.. ...++.. +.++ .++++.+.+.-.+.++...++|+.
T Consensus 115 ~~leai~~l~~~~~~~v~iig~v~gP~Tla~~l~gg~~~~~~~~~~~~l~~~Pe~v~~ll~~it~~~~~~~~~~ieaGa~ 194 (345)
T PLN02433 115 FVGEALKILRKEVGNEAAVLGFVGAPWTLATYIVEGGSSKNYKVIKKMAFTAPEVLHALLDKLTDAVIEYVDYQIDAGAQ 194 (345)
T ss_pred HHHHHHHHHHHHhCCCCceeeeCCcHHHHHHHHHcCCCCccHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 344555555433 2 455677899999874 211 1111000 0122 235555666666777777789999
Q ss_pred EEEeeccccccCCChHHHHHH-----HHHHHHHHhccCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEEeccCCCChh
Q 003819 202 WIQFDEPTLVLDLDSHKLQAF-----SDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLIRGTKTLD 276 (793)
Q Consensus 202 ~VQiDEP~L~~d~~~~~~~~~-----~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~lp~Vd~l~lD~~~~~~~l~ 276 (793)
.||+.|| ++.-++.+..+.| ++.++.+....+...+++|.| |. ...++.+.+++ +|++++|.. .++.
T Consensus 195 ~i~i~d~-~~~~lsp~~f~ef~~P~~k~i~~~i~~~~~~~~~ilh~c-G~--~~~~~~~~~~~-~~~i~~d~~---~dl~ 266 (345)
T PLN02433 195 VVQIFDS-WAGHLSPVDFEEFSKPYLEKIVDEVKARHPDVPLILYAN-GS--GGLLERLAGTG-VDVIGLDWT---VDMA 266 (345)
T ss_pred EEEEecC-ccccCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEeC-CC--HHHHHHHHhcC-CCEEEcCCC---CCHH
Confidence 9999999 5655666544333 444444433211245778877 43 35789999999 999999975 3566
Q ss_pred hHhhhCCCCCEEEEEEeeCCCCCCCCHHHHHHHHHHHhhhcCCCcEEEeCCCCCc
Q 003819 277 LIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVSTSCSLL 331 (793)
Q Consensus 277 ~l~~~~p~~k~l~lGvVdgrn~w~ed~~~i~~~i~~~~~~v~~e~l~vspsCgL~ 331 (793)
..++.++ ++.+..|=||. ....-+.+++.+.++++++..+....+++|.|++.
T Consensus 267 e~~~~~g-~~~~l~GNi~p-~ll~gt~e~i~~~v~~~i~~~~~~g~Il~~Gc~i~ 319 (345)
T PLN02433 267 DARRRLG-SDVAVQGNVDP-AVLFGSKEAIEKEVRDVVKKAGPQGHILNLGHGVL 319 (345)
T ss_pred HHHHHhC-CCeEEEeCCCc-hhhCCCHHHHHHHHHHHHHHcCCCCeEEecCCCCC
Confidence 5665464 57888898876 45577899999999999987665569999999985
No 59
>PRK00115 hemE uroporphyrinogen decarboxylase; Validated
Probab=98.16 E-value=0.00017 Score=80.34 Aligned_cols=186 Identities=13% Similarity=0.128 Sum_probs=120.5
Q ss_pred hhHHHHHHHHHc-C--CCCceEeehHHHHhh-hcc--CCCCcCC-----CCCH---HHHHHHHHHHHHHHHHHHHHCCCC
Q 003819 136 KAVQEYKEAKAL-G--METVPVLVGPVSYLL-LSK--PAKGVEK-----SFSL---LSLIDKIIPVYKEVVAELKAAGAT 201 (793)
Q Consensus 136 ~~~~e~~~a~~~-g--~~~K~vl~GP~T~l~-ls~--~~~~~~~-----~~~~---~~ll~~L~~~Y~~~l~~L~~aG~~ 201 (793)
..++..+..++. | +++=..+.||+|++. +.. ...++.. ..++ .++++.++++..+.++.+.++|+.
T Consensus 122 ~~leai~~l~~~~~~~~~vig~v~gP~Tla~~l~~~~~~~~~~~~~~~~~~~Pe~v~~ll~~~t~~~~~~~~~~~eaGad 201 (346)
T PRK00115 122 YVLEAVRLLRRELGGEVPLIGFAGAPWTLATYMVEGGGSKDYAKTKAMMYAEPELLHALLDKLADATIAYLNAQIEAGAQ 201 (346)
T ss_pred HHHHHHHHHHHHhCCCceEEeeCCcHHHHHHHHHcCCCCccHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 345555555533 2 445566789999975 321 1011000 0122 346666666677777878889999
Q ss_pred EEEeeccccccCCChHHHHHH-----HHHHHHHHhccCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEEeccCCCChh
Q 003819 202 WIQFDEPTLVLDLDSHKLQAF-----SDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLIRGTKTLD 276 (793)
Q Consensus 202 ~VQiDEP~L~~d~~~~~~~~~-----~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~lp~Vd~l~lD~~~~~~~l~ 276 (793)
.||+-|| ++.-++.+..+.| ++.++.+....+... ++|-| |+. ...++.+.+++ +|++++|.. .++.
T Consensus 202 ~i~i~d~-~~~~lsp~~f~ef~~P~~k~i~~~i~~~~~~~~-ilh~c-g~~-~~~~~~~~~~~-~~~is~d~~---~dl~ 273 (346)
T PRK00115 202 AVQIFDS-WAGALSPADYREFVLPYMKRIVAELKREHPDVP-VILFG-KGA-GELLEAMAETG-ADVVGLDWT---VDLA 273 (346)
T ss_pred EEEEecC-ccccCCHHHHHHHHHHHHHHHHHHHHHhCCCCC-EEEEc-CCc-HHHHHHHHhcC-CCEEeeCCC---CCHH
Confidence 9999999 4444565544433 344444433111223 44544 555 66789999999 999999974 3566
Q ss_pred hHhhhCCCCCEEEEEEeeCCCCCCCCHHHHHHHHHHHhhhcCCCcEEEeCCCCCc
Q 003819 277 LIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVSTSCSLL 331 (793)
Q Consensus 277 ~l~~~~p~~k~l~lGvVdgrn~w~ed~~~i~~~i~~~~~~v~~e~l~vspsCgL~ 331 (793)
..++.++ ++....|=||. ..-..+++++.+.++++++..+....+++|.|++.
T Consensus 274 ~~k~~~g-~~~~i~Gni~p-~ll~gt~e~i~~~~~~~i~~~~~~gfIl~~Gc~i~ 326 (346)
T PRK00115 274 EARRRVG-DKKALQGNLDP-AVLLAPPEAIEEEVRAILDGGGGPGHIFNLGHGIL 326 (346)
T ss_pred HHHHHcC-CCeEEEeCCCh-hHhcCCHHHHHHHHHHHHHHhCCCCeeeecCCcCC
Confidence 6665564 46788898887 45567899999999999987665679999999985
No 60
>TIGR01464 hemE uroporphyrinogen decarboxylase. This model represents uroporphyrinogen decarboxylase (HemE), which converts uroporphyrinogen III to coproporphyrinogen III. This step takes the pathway toward protoporphyrin IX, a common precursor of both heme and chlorophyll, rather than toward precorrin 2 and its products.
Probab=98.00 E-value=0.00021 Score=79.32 Aligned_cols=187 Identities=13% Similarity=0.126 Sum_probs=119.5
Q ss_pred chhHHHHHHHHHc-C--CCCceEeehHHHHhh-hcc--CCCCcC-----CCCCH---HHHHHHHHHHHHHHHHHHHHCCC
Q 003819 135 HKAVQEYKEAKAL-G--METVPVLVGPVSYLL-LSK--PAKGVE-----KSFSL---LSLIDKIIPVYKEVVAELKAAGA 200 (793)
Q Consensus 135 ~~~~~e~~~a~~~-g--~~~K~vl~GP~T~l~-ls~--~~~~~~-----~~~~~---~~ll~~L~~~Y~~~l~~L~~aG~ 200 (793)
+..++..+.+++. + +++=..+.||+|++. +.. ...++. -..++ .++++.+++...+.++.+.++|+
T Consensus 115 ~~~leai~~l~~~~~~~~pi~g~~~gP~Tla~~l~~g~~~~~~~~~~~~~~~~Pe~v~~ll~~~t~~~~~~~~~~~eaGa 194 (338)
T TIGR01464 115 PYVYEAIKLLREELPGEVPLIGFAGAPWTLASYMIEGGGSKDFAKAKRFMYQEPEVLHALLNKLTDATIEYLVEQVKAGA 194 (338)
T ss_pred HHHHHHHHHHHHHcCCCCceEEeCCchHHHHHHHHcCCCCccHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3445555555543 2 455667789999874 221 000100 00122 23555566666677777788999
Q ss_pred CEEEeeccccccCCChHHHHH-----HHHHHHHHHhccCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEEeccCCCCh
Q 003819 201 TWIQFDEPTLVLDLDSHKLQA-----FSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLIRGTKTL 275 (793)
Q Consensus 201 ~~VQiDEP~L~~d~~~~~~~~-----~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~lp~Vd~l~lD~~~~~~~l 275 (793)
..||+-|| ++.-++.+..+. +++.++.+....+...+ +|-| |+. ...++.+.+++ +|++++|.. .++
T Consensus 195 d~i~i~d~-~~~~lsp~~f~ef~~p~~k~i~~~i~~~~~~~~i-lh~c-g~~-~~~~~~~~~~~-~~~~s~d~~---~dl 266 (338)
T TIGR01464 195 QAVQIFDS-WAGALSPEDFEEFVLPYLKKIIEEVKARLPNVPV-ILFA-KGA-GHLLEELAETG-ADVVGLDWT---VDL 266 (338)
T ss_pred CEEEEECC-ccccCCHHHHHHHHHHHHHHHHHHHHHhCCCCCE-EEEe-CCc-HHHHHHHHhcC-CCEEEeCCC---CCH
Confidence 99999999 454455554333 24444444332112233 4444 555 67899999999 999999974 356
Q ss_pred hhHhhhCCCCCEEEEEEeeCCCCCCCCHHHHHHHHHHHhhhcC-CCcEEEeCCCCCc
Q 003819 276 DLIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVG-KDKVVVSTSCSLL 331 (793)
Q Consensus 276 ~~l~~~~p~~k~l~lGvVdgrn~w~ed~~~i~~~i~~~~~~v~-~e~l~vspsCgL~ 331 (793)
...++.++ +|....|=||..-. ..+.+++.+.++++++..+ ....++||.|++.
T Consensus 267 ~e~~~~~~-~~~~i~Gni~p~~l-~gt~e~i~~~v~~~l~~~~~~~g~Il~~Gc~i~ 321 (338)
T TIGR01464 267 KEARKRVG-PGVAIQGNLDPAVL-YAPEEALEEKVEKILEAFGGKSRYIFNLGHGIL 321 (338)
T ss_pred HHHHHHhC-CCeeEEeCCChHHh-cCCHHHHHHHHHHHHHHhccCCCceecCCCcCC
Confidence 66665564 56788888887544 6689999999999998764 3459999999985
No 61
>cd00717 URO-D Uroporphyrinogen decarboxylase (URO-D) is a dimeric cytosolic enzyme that decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, without requiring any prosthetic groups or cofactors. This reaction is located at the branching point of the tetrapyrrole biosynthetic pathway, leading to the biosynthesis of heme, chlorophyll or bacteriochlorophyll. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP).
Probab=97.89 E-value=0.00029 Score=78.08 Aligned_cols=186 Identities=15% Similarity=0.139 Sum_probs=118.9
Q ss_pred hhHHHHHHHHHc-C--CCCceEeehHHHHhhhcc---CCCCcCC-----CCCH---HHHHHHHHHHHHHHHHHHHHCCCC
Q 003819 136 KAVQEYKEAKAL-G--METVPVLVGPVSYLLLSK---PAKGVEK-----SFSL---LSLIDKIIPVYKEVVAELKAAGAT 201 (793)
Q Consensus 136 ~~~~e~~~a~~~-g--~~~K~vl~GP~T~l~ls~---~~~~~~~-----~~~~---~~ll~~L~~~Y~~~l~~L~~aG~~ 201 (793)
..++..+..++. | +++=.++.||+|++.... ...++.. ..++ .++++.+.+...+.++.+.++|+.
T Consensus 113 ~~leai~~l~~~~~~~~~i~g~v~gP~Tla~~l~~~~~~~~~~~~~~~l~~~Pe~v~~~l~~it~~~~~~~~~~ieaGad 192 (335)
T cd00717 113 YVYEAIKLTRKELPGEVPLIGFAGAPWTLASYMIEGGGSKDFAKAKKMMYTDPEAFHALLDKLTDATIEYLKAQIEAGAQ 192 (335)
T ss_pred HHHHHHHHHHHHcCCCceEEeecCCHHHHHHHHHCCCCCccHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 344444554433 3 455666789999885221 1111000 0022 345556666667777777789999
Q ss_pred EEEeeccccccCCChHHHHH-----HHHHHHHHHhccCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEEeccCCCChh
Q 003819 202 WIQFDEPTLVLDLDSHKLQA-----FSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLIRGTKTLD 276 (793)
Q Consensus 202 ~VQiDEP~L~~d~~~~~~~~-----~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~lp~Vd~l~lD~~~~~~~l~ 276 (793)
.||+-|| ++.-++.+..+. +++.++.+....+... ++|-| |+- .+.++.+.+++ ++++++|.. .++.
T Consensus 193 ~i~i~d~-~~~~lsp~~f~ef~~P~~k~i~~~i~~~~~~~~-ilh~c-g~~-~~~~~~~~~~~-~~~~s~d~~---~dl~ 264 (335)
T cd00717 193 AVQIFDS-WAGALSPEDFEEFVLPYLKRIIEEVKKRLPGVP-VILFA-KGA-GGLLEDLAQLG-ADVVGLDWR---VDLD 264 (335)
T ss_pred EEEEeCc-ccccCCHHHHHHHHHHHHHHHHHHHHHhCCCCC-EEEEc-CCC-HHHHHHHHhcC-CCEEEeCCC---CCHH
Confidence 9999999 444455554333 2444444433211223 34444 455 57899999999 999999975 3566
Q ss_pred hHhhhCCCCCEEEEEEeeCCCCCCCCHHHHHHHHHHHhhhcCC-CcEEEeCCCCCc
Q 003819 277 LIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGK-DKVVVSTSCSLL 331 (793)
Q Consensus 277 ~l~~~~p~~k~l~lGvVdgrn~w~ed~~~i~~~i~~~~~~v~~-e~l~vspsCgL~ 331 (793)
..++.++ +|.+..|=||.. ....+.+++.+.++++++..+. .+.++||.|++.
T Consensus 265 e~k~~~g-~~~~i~Gni~p~-~l~~~~e~i~~~v~~~l~~~~~~~gfIl~~gc~i~ 318 (335)
T cd00717 265 EARKRLG-PKVALQGNLDPA-LLYAPKEAIEKEVKRILKAFGGAPGHIFNLGHGIL 318 (335)
T ss_pred HHHHHhC-CCeEEEeCCChh-hhcCCHHHHHHHHHHHHHHhCcCCCceeecCCcCC
Confidence 6665564 578888988874 4667889999999999987754 579999999974
No 62
>KOG2872 consensus Uroporphyrinogen decarboxylase [Coenzyme transport and metabolism]
Probab=97.81 E-value=0.00016 Score=76.06 Aligned_cols=190 Identities=15% Similarity=0.124 Sum_probs=135.3
Q ss_pred CCceeeechHHHHhhccccc--------------CC-CChHHHHHHHHHHHHHHHHHHHHcCCcEEEEcCcccccCCCCC
Q 003819 580 RPMKGMLTGPVTILNWSFVR--------------ND-QPRFETCYQIALAIKDEVEDLEKAGITVIQIDEAALREGLPLR 644 (793)
Q Consensus 580 kpvK~~LtGPvTll~~s~~~--------------~~-~~~~e~~~~lA~al~~ev~~L~~aGv~~IQIDEPal~~~l~l~ 644 (793)
.|+-|-.-+|+|++...... .+ .....++.-|..++-+.+..-..+|+.++||=|-...+.
T Consensus 145 vpl~GF~GaPwTlm~YmiEGGgSkt~~~aK~w~~~~Pe~sh~lL~~lTda~v~Yl~~Qv~aGAq~lQiFeSwageL---- 220 (359)
T KOG2872|consen 145 VPLIGFVGAPWTLMTYMIEGGGSKTFTQAKRWLFQYPEVSHALLQILTDAIVEYLVYQVVAGAQALQIFESWAGEL---- 220 (359)
T ss_pred cceeeecCCchhhheeeecCCCchhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcccC----
Confidence 58888888999998532110 01 123356667788888888888899999999988665553
Q ss_pred cccHHHHHHHHHHHHHHHhcCCCC--------CCeEEEEeCCCCchhHHHHHHcCCCcEEEEecCCCChhhHHHhhhccc
Q 003819 645 KSEQDFYLKWAVHSFRITNCGVQD--------TTQVHTHMCYSNFNDIIHSIMDMDADVITIENSRSDEKLLSVFREGVK 716 (793)
Q Consensus 645 ~~~~~~~l~~av~a~~~~~~~v~~--------~~~I~lH~C~g~~~~i~~~l~~l~~D~isiE~~r~~~~~L~~~~~~~~ 716 (793)
++.+|.+|+.+.++++.+.++. .+.+++-.-.+. -.++.++++++|++++|-+....+.-+.+.
T Consensus 221 --spe~f~e~s~PYl~~I~~~Vk~rl~~~~~~~vPmi~fakG~g--~~Le~l~~tG~DVvgLDWTvdp~ear~~~g---- 292 (359)
T KOG2872|consen 221 --SPEDFEEFSLPYLRQIAEAVKKRLPELGLAPVPMILFAKGSG--GALEELAQTGYDVVGLDWTVDPAEARRRVG---- 292 (359)
T ss_pred --CHHHHHHhhhHHHHHHHHHHHHhhhhhcCCCCceEEEEcCcc--hHHHHHHhcCCcEEeecccccHHHHHHhhC----
Confidence 3567888888888888776642 123444333222 478999999999999996554333222222
Q ss_pred CCCeEeeeeecCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEcCCCCCCCCChhHHHHHHHHHHHHHHHHH
Q 003819 717 YRAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLESNILWVNPDCGLKTRKYSEVKPALSNMVAAAKLLR 786 (793)
Q Consensus 717 ~~~~i~~GVvD~~s~~ves~eev~~~i~~al~~i~~~~l~vsPdCGL~t~~~~~~~~kL~~mv~aa~~~r 786 (793)
++.-.=|++|.... -.|.|++.+++++.++..|+++-++|=+.|....+++ ...+..++++.+.+
T Consensus 293 -~~VtlQGNlDP~~l-y~s~e~it~~v~~mv~~fG~~ryI~NLGHGi~p~tp~---e~v~~f~E~~h~~~ 357 (359)
T KOG2872|consen 293 -NRVTLQGNLDPGVL-YGSKEEITQLVKQMVKDFGKSRYIANLGHGITPGTPP---EHVAHFVEAVHKIG 357 (359)
T ss_pred -CceEEecCCChHHh-cCCHHHHHHHHHHHHHHhCccceEEecCCCCCCCCCH---HHHHHHHHHHHHhc
Confidence 23445588875432 3689999999999999999999999999999998884 45667788877654
No 63
>cd03309 CmuC_like CmuC_like. Proteins similar to the putative corrinoid methyltransferase CmuC. Its function has been inferred from sequence similarity to the methyltransferases CmuA and MtaA. Mutants of Methylobacterium sp. disrupted in cmuC and purU appear deficient in some step of chloromethane metabolism.
Probab=97.52 E-value=0.0015 Score=72.09 Aligned_cols=175 Identities=9% Similarity=0.105 Sum_probs=117.8
Q ss_pred CCceEeehHHHHhhhccCCCCc----CCCC-CHHHHHHHHHHHHHHHHHHHHHC-CCCEEEeeccccc---cCCChHHHH
Q 003819 150 ETVPVLVGPVSYLLLSKPAKGV----EKSF-SLLSLIDKIIPVYKEVVAELKAA-GATWIQFDEPTLV---LDLDSHKLQ 220 (793)
Q Consensus 150 ~~K~vl~GP~T~l~ls~~~~~~----~~~~-~~~~ll~~L~~~Y~~~l~~L~~a-G~~~VQiDEP~L~---~d~~~~~~~ 220 (793)
..-+.+.||+|.+.+-..-++. .... .-.++++.+.++..+.++...++ |+..||+-|+.=. .-++.++.+
T Consensus 114 ~~~~~~~Gpf~~a~~l~g~e~~~~~l~~~PE~v~~lld~ltd~~i~y~~~qiea~Gad~I~i~Ddwa~~~~~~LSpe~f~ 193 (321)
T cd03309 114 IDVPLPGGVFERFRLRMSMEDALMALYEEPEAAHELFDYLTDAKLKLYERRIKHLEPDLLVYHDDLGSQKGSFISPATFR 193 (321)
T ss_pred eccCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCCccccCCccCHHHHH
Confidence 3467889999986432100000 0001 12457788888888888877777 9999999764322 123444332
Q ss_pred -----HHHHHHHHHHhccCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEEeccCCCChhhHhhhCCCCCEEEEEEeeC
Q 003819 221 -----AFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLIRGTKTLDLIKTEFPLGKYLFAGVVDG 295 (793)
Q Consensus 221 -----~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~lp~Vd~l~lD~~~~~~~l~~l~~~~p~~k~l~lGvVdg 295 (793)
.+++.++.+.+. ....+++|.| |+. ...++.+.+++ +|.+++|+.. .++..+++.++ +|....|-+|.
T Consensus 194 efv~P~~krIi~~ik~~-~g~piilH~c-G~~-~~~l~~~~e~g-~dvl~~d~~~--~dl~eak~~~g-~k~~l~GNlDp 266 (321)
T cd03309 194 EFILPRMQRIFDFLRSN-TSALIVHHSC-GAA-ASLVPSMAEMG-VDSWNVVMTA--NNTAELRRLLG-DKVVLAGAIDD 266 (321)
T ss_pred HHHHHHHHHHHHHHHhc-cCCceEEEeC-CCc-HHHHHHHHHcC-CCEEEecCCC--CCHHHHHHHhC-CCeEEEcCCCh
Confidence 234444444331 1235788888 766 67899999999 9999999754 35666665564 57888899997
Q ss_pred CCCCCCC-HHHHHHHHHHHhhhcCC-CcEEEeCCCCCc
Q 003819 296 RNIWAND-LASSLTTLQDLAGTVGK-DKVVVSTSCSLL 331 (793)
Q Consensus 296 rn~w~ed-~~~i~~~i~~~~~~v~~-e~l~vspsCgL~ 331 (793)
...-... ++++.+.++++.+.+++ .+.+.+|+|++-
T Consensus 267 ~~L~~~~t~E~i~~~v~~~l~~~g~~~~fIf~~~~~~~ 304 (321)
T cd03309 267 VALDTATWPEEDARGVAKAAAECAPIHPFISAPTAGLP 304 (321)
T ss_pred HHhcCCCCHHHHHHHHHHHHHHhCCCCCEEeCccCCCC
Confidence 6555444 79999999999998886 789999999984
No 64
>COG0407 HemE Uroporphyrinogen-III decarboxylase [Coenzyme metabolism]
Probab=96.36 E-value=0.088 Score=58.64 Aligned_cols=187 Identities=16% Similarity=0.155 Sum_probs=120.6
Q ss_pred chhHHHHHHHHH-cC--CCCceEeehHHHHh-hhcc--CCCCcCC-----CCCH---HHHHHHHHHHHHHHHHHHHHCCC
Q 003819 135 HKAVQEYKEAKA-LG--METVPVLVGPVSYL-LLSK--PAKGVEK-----SFSL---LSLIDKIIPVYKEVVAELKAAGA 200 (793)
Q Consensus 135 ~~~~~e~~~a~~-~g--~~~K~vl~GP~T~l-~ls~--~~~~~~~-----~~~~---~~ll~~L~~~Y~~~l~~L~~aG~ 200 (793)
+..++..+-+++ ++ .+.=.-.-||+|++ ++.. .++++.. +.++ ..+++.++++-.+-++...++|+
T Consensus 124 ~~V~~ai~~lrekl~~~~pLIgf~gsP~TlAsymieg~~s~~~~~~k~~m~~~P~~~~~ll~kltd~~i~Yl~~qi~aGA 203 (352)
T COG0407 124 PYVLDAIKLLREKLGGEVPLIGFAGSPWTLASYLIEGGGSKDFSKTKAMMYTEPDAVHALLDKLTDAVIEYLKAQIEAGA 203 (352)
T ss_pred HHHHHHHHHHHHHcCCCCCeEEecCCHHHHHHHHHcCCCcccHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 456666666663 33 33344456899997 3321 1111100 0122 45888999999999999999999
Q ss_pred CEEEeeccccccCCChHHHHHHHHHH-----HHHHhccCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEEeccCCCCh
Q 003819 201 TWIQFDEPTLVLDLDSHKLQAFSDAY-----SELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLIRGTKTL 275 (793)
Q Consensus 201 ~~VQiDEP~L~~d~~~~~~~~~~~~y-----~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~lp~Vd~l~lD~~~~~~~l 275 (793)
+.|||.+.. +..++..+-+.|..-| +.+....+.+. +++-| ++. ...++.+.+.+ +|++++|+.-+ +
T Consensus 204 davqifDsW-~g~l~~~~~~~f~~~~~~~i~~~vk~~~~~~p-ii~f~-~ga-~~~l~~m~~~g-~d~l~vdw~v~---l 275 (352)
T COG0407 204 DAVQIFDSW-AGVLSMIDYDEFVLPYMKRIVREVKEVKGGVP-VIHFC-KGA-GHLLEDMAKTG-FDVLGVDWRVD---L 275 (352)
T ss_pred CEEEeeccc-cccCCcccHHHHhhhHHHHHHHHHHHhCCCCc-EEEEC-CCc-HHHHHHHHhcC-CcEEeeccccC---H
Confidence 999999984 3233333334443333 33332111122 34434 344 56788999999 99999998654 4
Q ss_pred hhHhhhCCCCCEEEEEEeeCCCCCCCCHHHHHHHHHHHhhhcCC-CcEEEeCCCCCc
Q 003819 276 DLIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGK-DKVVVSTSCSLL 331 (793)
Q Consensus 276 ~~l~~~~p~~k~l~lGvVdgrn~w~ed~~~i~~~i~~~~~~v~~-e~l~vspsCgL~ 331 (793)
+...+.+ .++...-|=+|. .+...+.+++.+..+++++-.+. ...++|+-||..
T Consensus 276 ~~a~~~~-~~~~~lqGNldP-~lL~~~~~~i~~~~~~iL~~~~~~~~~IfnlGhGI~ 330 (352)
T COG0407 276 KEAKKRL-GDKVALQGNLDP-ALLYAPPEAIKEEVKRILEDGGDGSGYIFNLGHGIL 330 (352)
T ss_pred HHHHHHh-CCCceEEeccCh-HhhcCCHHHHHHHHHHHHHHhccCCCceecCCCCcC
Confidence 4444333 334678899999 88899999999989888876443 479999999985
No 65
>cd03308 CmuA_CmuC_like CmuA_CmuC_like: uncharacterized protein family similar to uroporphyrinogen decarboxylase (URO-D) and the methyltransferases CmuA and CmuC.
Probab=95.55 E-value=0.27 Score=55.67 Aligned_cols=174 Identities=13% Similarity=0.101 Sum_probs=111.9
Q ss_pred CCCceEeehHHH-HhhhccCCCCcC--CCCCH---HHHHHHHHHHHHHHHHHHHHCCCCE-EEeeccc-cccCCChHHHH
Q 003819 149 METVPVLVGPVS-YLLLSKPAKGVE--KSFSL---LSLIDKIIPVYKEVVAELKAAGATW-IQFDEPT-LVLDLDSHKLQ 220 (793)
Q Consensus 149 ~~~K~vl~GP~T-~l~ls~~~~~~~--~~~~~---~~ll~~L~~~Y~~~l~~L~~aG~~~-VQiDEP~-L~~d~~~~~~~ 220 (793)
.++=..+.||+| +...-+.-...- -..++ .++++.+.+.-.+.++...++|+.- |-+.+|. ++.-++.+..+
T Consensus 171 vpi~~~~~gPf~~la~~l~g~~~~~~~l~~~Pe~v~~ll~~~td~~i~~~~~~ieaGa~~~i~i~~~~s~~~~lsp~~f~ 250 (378)
T cd03308 171 LNAGGVSEAPFDIIGDYLRGFKGISIDLRRRPEKVAEACEAVTPLMIKMGTATAPAPYPGPVFTPIPLHLPPFLRPKQFE 250 (378)
T ss_pred cccceeEeCChHHHHHHHhCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEecccccCccCHHHHH
Confidence 467788999997 542111100000 00122 3577777777778888888999993 3344443 33344554433
Q ss_pred H-----HHHHHHHHHhccCCCcEEEEeccCCCchhhHHHHhcCCCcc-EEEEEeccCCCChhhHhhhCCCCCEEEEEEee
Q 003819 221 A-----FSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVT-GFGFDLIRGTKTLDLIKTEFPLGKYLFAGVVD 294 (793)
Q Consensus 221 ~-----~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~lp~Vd-~l~lD~~~~~~~l~~l~~~~p~~k~l~lGvVd 294 (793)
. +++..+.+... +..+++|.| |+. ..+++.+.+++ .+ .++++.. .++...++.++ ++....|=||
T Consensus 251 ef~~P~~k~i~~~i~~~--g~~~ilh~c-G~~-~~~l~~l~~~g-~~~v~~~~~~---~dl~~ak~~~g-~~~~i~GNl~ 321 (378)
T cd03308 251 KFYWPSFKKVVEGLAAR--GQRIFLFFE-GDW-ERYLEYLQELP-KGKTVGLFEY---GDPKKVKEKLG-DKKCIAGGFP 321 (378)
T ss_pred HHHHHHHHHHHHHHHhc--CCCEEEEcC-CCc-HHHHHHHHhcC-CCcEEEcCCC---CCHHHHHHHhC-CCEEEEcCCC
Confidence 3 34444444331 346777877 777 67899999999 77 5665532 46766666565 5677788888
Q ss_pred CCCCCCCCHHHHHHHHHHHhhhcC-CCcEEEeCCCCCc
Q 003819 295 GRNIWANDLASSLTTLQDLAGTVG-KDKVVVSTSCSLL 331 (793)
Q Consensus 295 grn~w~ed~~~i~~~i~~~~~~v~-~e~l~vspsCgL~ 331 (793)
.--...-+++++.+.++++++..+ ....+++|.||+.
T Consensus 322 p~~L~~Gt~e~i~~~v~~~l~~~~~~~gfIl~~gcgi~ 359 (378)
T cd03308 322 TTLLKYGTPEECIDYVKELLDTLAPGGGFIFGTDKPII 359 (378)
T ss_pred CHHHhcCCHHHHHHHHHHHHHHhCCCCCEEEeCCCcCC
Confidence 764444599999999999999765 3569999999996
No 66
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=93.60 E-value=0.96 Score=47.47 Aligned_cols=88 Identities=17% Similarity=0.289 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHcCCcEEEEcCcc--cccCCCCCcccHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCchhHHHHHHcC
Q 003819 614 AIKDEVEDLEKAGITVIQIDEAA--LREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDM 691 (793)
Q Consensus 614 al~~ev~~L~~aGv~~IQIDEPa--l~~~l~l~~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~C~g~~~~i~~~l~~l 691 (793)
.+.+|++.|+++|+++|.+|=.- +...+. +-...+.+++..+..+ .+.+|+.-.+-...++.+.+.
T Consensus 17 ~l~~~i~~l~~~g~d~lHiDimDG~FVPN~t--------fg~~~i~~lr~~~~~~----~~dvHLMv~~P~~~i~~~~~~ 84 (223)
T PRK08745 17 RLGEEVDNVLKAGADWVHFDVMDNHYVPNLT--------IGPMVCQALRKHGITA----PIDVHLMVEPVDRIVPDFADA 84 (223)
T ss_pred HHHHHHHHHHHcCCCEEEEecccCccCCCcc--------cCHHHHHHHHhhCCCC----CEEEEeccCCHHHHHHHHHHh
Confidence 67899999999999999999422 322221 2224566666542233 367787767888889999999
Q ss_pred CCcEEEEec--CCCChhhHHHhhh
Q 003819 692 DADVITIEN--SRSDEKLLSVFRE 713 (793)
Q Consensus 692 ~~D~isiE~--~r~~~~~L~~~~~ 713 (793)
++|.|++-. +....+.++.+++
T Consensus 85 gad~I~~H~Ea~~~~~~~l~~Ir~ 108 (223)
T PRK08745 85 GATTISFHPEASRHVHRTIQLIKS 108 (223)
T ss_pred CCCEEEEcccCcccHHHHHHHHHH
Confidence 999888763 3333455666776
No 67
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=93.42 E-value=0.77 Score=48.27 Aligned_cols=140 Identities=11% Similarity=0.183 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHcCCcEEEEcCcc--cccCCCCCcccHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCchhHHHHHHcC
Q 003819 614 AIKDEVEDLEKAGITVIQIDEAA--LREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDM 691 (793)
Q Consensus 614 al~~ev~~L~~aGv~~IQIDEPa--l~~~l~l~~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~C~g~~~~i~~~l~~l 691 (793)
.+.+|++.|+++|++++.+|=.- +...+. +-...+.+++ . ...+.+|+.-.+-...++.+.+.
T Consensus 26 ~l~~el~~l~~~g~d~lHiDVMDG~FVPNit--------fGp~~i~~i~---~----~~~~DvHLMv~~P~~~i~~~~~a 90 (228)
T PRK08091 26 KFNETLTTLSENQLRLLHFDIADGQFSPFFT--------VGAIAIKQFP---T----HCFKDVHLMVRDQFEVAKACVAA 90 (228)
T ss_pred HHHHHHHHHHHCCCCEEEEeccCCCcCCccc--------cCHHHHHHhC---C----CCCEEEEeccCCHHHHHHHHHHh
Confidence 67889999999999999999422 332221 2223455553 1 24578888777888899999999
Q ss_pred CCcEEEEecC--CCChhhHHHhhhcccCCCeEeeeee-cCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEcCCCCCCCCCh
Q 003819 692 DADVITIENS--RSDEKLLSVFREGVKYRAGIGPGVY-DIHSPRIPSTEEIADRINKMLAVLESNILWVNPDCGLKTRKY 768 (793)
Q Consensus 692 ~~D~isiE~~--r~~~~~L~~~~~~~~~~~~i~~GVv-D~~s~~ves~eev~~~i~~al~~i~~~~l~vsPdCGL~t~~~ 768 (793)
++|.|++-.. ....+.++.+++ .+..+-+|+. +..+ +++.+...+.. ++.+ =-+-|+|+.|=....+
T Consensus 91 Gad~It~H~Ea~~~~~~~l~~Ik~---~g~~~kaGlalnP~T----p~~~i~~~l~~-vD~V--LiMtV~PGfgGQ~f~~ 160 (228)
T PRK08091 91 GADIVTLQVEQTHDLALTIEWLAK---QKTTVLIGLCLCPET----PISLLEPYLDQ-IDLI--QILTLDPRTGTKAPSD 160 (228)
T ss_pred CCCEEEEcccCcccHHHHHHHHHH---CCCCceEEEEECCCC----CHHHHHHHHhh-cCEE--EEEEECCCCCCccccH
Confidence 9998887633 222355666776 2332366663 3222 23333222222 2221 1345677665333332
Q ss_pred hHHHHHHHHHH
Q 003819 769 SEVKPALSNMV 779 (793)
Q Consensus 769 ~~~~~kL~~mv 779 (793)
.+..|++.+.
T Consensus 161 -~~l~KI~~lr 170 (228)
T PRK08091 161 -LILDRVIQVE 170 (228)
T ss_pred -HHHHHHHHHH
Confidence 3455555443
No 68
>PRK08005 epimerase; Validated
Probab=92.45 E-value=1.3 Score=46.04 Aligned_cols=87 Identities=10% Similarity=0.165 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHcCCcEEEEcCcc--cccCCCCCcccHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCchhHHHHHHcC
Q 003819 614 AIKDEVEDLEKAGITVIQIDEAA--LREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDM 691 (793)
Q Consensus 614 al~~ev~~L~~aGv~~IQIDEPa--l~~~l~l~~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~C~g~~~~i~~~l~~l 691 (793)
.+.+|++.|+++|+++|.+|=.. +...+. +-...+++++..+ . ..+.+|+.-.+-...++.+.++
T Consensus 14 ~l~~el~~l~~~g~d~lHiDvMDG~FVPN~t--------fG~~~i~~l~~~t-~----~~~DvHLMv~~P~~~i~~~~~~ 80 (210)
T PRK08005 14 RYAEALTALHDAPLGSLHLDIEDTSFINNIT--------FGMKTIQAVAQQT-R----HPLSFHLMVSSPQRWLPWLAAI 80 (210)
T ss_pred HHHHHHHHHHHCCCCEEEEeccCCCcCCccc--------cCHHHHHHHHhcC-C----CCeEEEeccCCHHHHHHHHHHh
Confidence 67889999999999999999422 222221 2234566666543 2 2477887777888899999999
Q ss_pred CCcEEEEec--CCCChhhHHHhhh
Q 003819 692 DADVITIEN--SRSDEKLLSVFRE 713 (793)
Q Consensus 692 ~~D~isiE~--~r~~~~~L~~~~~ 713 (793)
++|.|++-. +....+.++.+++
T Consensus 81 gad~It~H~Ea~~~~~~~l~~Ik~ 104 (210)
T PRK08005 81 RPGWIFIHAESVQNPSEILADIRA 104 (210)
T ss_pred CCCEEEEcccCccCHHHHHHHHHH
Confidence 999888763 3323355677776
No 69
>PLN02334 ribulose-phosphate 3-epimerase
Probab=91.41 E-value=3.9 Score=42.87 Aligned_cols=75 Identities=17% Similarity=0.184 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHcCCcEEEEcCcccccCCCCCcccHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCchhHHHHHHcCCC
Q 003819 614 AIKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDA 693 (793)
Q Consensus 614 al~~ev~~L~~aGv~~IQIDEPal~~~l~l~~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~C~g~~~~i~~~l~~l~~ 693 (793)
.+.++++.+.++|+++||+|+...... |.. .+-...+..++..+. ..+.+|+---+-++.++.+.+.++
T Consensus 21 ~l~~~l~~~~~~g~~~ihld~~d~~f~-~~~-----~~g~~~~~~l~~~~~-----~~~~vhlmv~~p~d~~~~~~~~ga 89 (229)
T PLN02334 21 NLAEEAKRVLDAGADWLHVDVMDGHFV-PNL-----TIGPPVVKALRKHTD-----APLDCHLMVTNPEDYVPDFAKAGA 89 (229)
T ss_pred HHHHHHHHHHHcCCCEEEEecccCCcC-Ccc-----ccCHHHHHHHHhcCC-----CcEEEEeccCCHHHHHHHHHHcCC
Confidence 367788999999999999998765321 110 111134455544321 235677665566788888999999
Q ss_pred cEE--EEe
Q 003819 694 DVI--TIE 699 (793)
Q Consensus 694 D~i--siE 699 (793)
|++ ++|
T Consensus 90 d~v~vH~~ 97 (229)
T PLN02334 90 SIFTFHIE 97 (229)
T ss_pred CEEEEeec
Confidence 999 777
No 70
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=91.06 E-value=2.5 Score=44.27 Aligned_cols=88 Identities=19% Similarity=0.283 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHcCCcEEEEcCc--ccccCCCCCcccHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCchhHHHHHHcC
Q 003819 614 AIKDEVEDLEKAGITVIQIDEA--ALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDM 691 (793)
Q Consensus 614 al~~ev~~L~~aGv~~IQIDEP--al~~~l~l~~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~C~g~~~~i~~~l~~l 691 (793)
-+.+|++.|+++|++++.+|=. .+...+. +-...+.+++..+..+ .+.+|+.-.+-...++.+.+.
T Consensus 13 ~l~~~i~~l~~~g~~~lH~DvmDG~Fvpn~t--------fg~~~i~~i~~~~~~~----~~dvHLMv~~p~~~i~~~~~~ 80 (220)
T PRK08883 13 RLGEDVEKVLAAGADVVHFDVMDNHYVPNLT--------FGAPICKALRDYGITA----PIDVHLMVKPVDRIIPDFAKA 80 (220)
T ss_pred HHHHHHHHHHHcCCCEEEEecccCcccCccc--------cCHHHHHHHHHhCCCC----CEEEEeccCCHHHHHHHHHHh
Confidence 6789999999999999999932 2332222 2224566666542233 377787777888899999999
Q ss_pred CCcEEEEec--CCCChhhHHHhhh
Q 003819 692 DADVITIEN--SRSDEKLLSVFRE 713 (793)
Q Consensus 692 ~~D~isiE~--~r~~~~~L~~~~~ 713 (793)
++|.|++-. ...-.+.++.+++
T Consensus 81 gad~i~~H~Ea~~~~~~~l~~ik~ 104 (220)
T PRK08883 81 GASMITFHVEASEHVDRTLQLIKE 104 (220)
T ss_pred CCCEEEEcccCcccHHHHHHHHHH
Confidence 999888753 3322345666666
No 71
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=90.74 E-value=5.6 Score=40.01 Aligned_cols=110 Identities=18% Similarity=0.241 Sum_probs=63.7
Q ss_pred HHHHHHHHHHCCCCEEEeeccccccCCChHHHHHHHHHHHHHHhccCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEE
Q 003819 188 YKEVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFD 267 (793)
Q Consensus 188 Y~~~l~~L~~aG~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~lp~Vd~l~lD 267 (793)
+.+.++++.+.|+.+||+-+|-+ +..+...+.+....+.... +.+++++.+ .+...++. +||+||.
T Consensus 14 ~~~~l~~~~~~gv~~v~lR~k~~----~~~~~~~~a~~l~~~~~~~-~~~liin~~--------~~la~~~~-~dGvHl~ 79 (180)
T PF02581_consen 14 FLEQLEAALAAGVDLVQLREKDL----SDEELLELARRLAELCQKY-GVPLIINDR--------VDLALELG-ADGVHLG 79 (180)
T ss_dssp HHHHHHHHHHTT-SEEEEE-SSS-----HHHHHHHHHHHHHHHHHT-TGCEEEES---------HHHHHHCT--SEEEEB
T ss_pred HHHHHHHHHHCCCcEEEEcCCCC----CccHHHHHHHHHHHHhhcc-eEEEEecCC--------HHHHHhcC-CCEEEec
Confidence 44556667788999999999843 3344444333334443322 467888854 34556688 9999998
Q ss_pred eccCCCChhhHhhhCCCCCEEEEEEeeCCCCCCCCHHHHHHHHHHHhhhcCCCcEEEeC
Q 003819 268 LIRGTKTLDLIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVST 326 (793)
Q Consensus 268 ~~~~~~~l~~l~~~~p~~k~l~lGvVdgrn~w~ed~~~i~~~i~~~~~~v~~e~l~vsp 326 (793)
-..- .....+..+++++.+++.+ -+.++ ++++. ..+.|-+.+||
T Consensus 80 ~~~~--~~~~~r~~~~~~~~ig~S~--------h~~~e----~~~a~-~~g~dYv~~gp 123 (180)
T PF02581_consen 80 QSDL--PPAEARKLLGPDKIIGASC--------HSLEE----AREAE-ELGADYVFLGP 123 (180)
T ss_dssp TTSS--SHHHHHHHHTTTSEEEEEE--------SSHHH----HHHHH-HCTTSEEEEET
T ss_pred cccc--chHHhhhhcccceEEEeec--------CcHHH----HHHhh-hcCCCEEEECC
Confidence 6432 2333333366777777766 44555 33333 24668899988
No 72
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=89.58 E-value=2 Score=44.38 Aligned_cols=96 Identities=19% Similarity=0.293 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHcCCcEEEEcCcc--cccCCCCCcccHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCchhHHHHHHcC
Q 003819 614 AIKDEVEDLEKAGITVIQIDEAA--LREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDM 691 (793)
Q Consensus 614 al~~ev~~L~~aGv~~IQIDEPa--l~~~l~l~~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~C~g~~~~i~~~l~~l 691 (793)
.+.++++.|+++|++++.+|=.. +...+. +-...+++++.. ....+.+|+.-.+-...++.+.+.
T Consensus 13 ~l~~~i~~l~~~g~d~lHiDiMDg~fvpn~~--------~g~~~i~~i~~~-----~~~~~DvHLMv~~P~~~i~~~~~~ 79 (201)
T PF00834_consen 13 NLEEEIKRLEEAGADWLHIDIMDGHFVPNLT--------FGPDIIKAIRKI-----TDLPLDVHLMVENPERYIEEFAEA 79 (201)
T ss_dssp GHHHHHHHHHHTT-SEEEEEEEBSSSSSSB---------B-HHHHHHHHTT-----SSSEEEEEEESSSGGGHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCEEEEeecccccCCccc--------CCHHHHHHHhhc-----CCCcEEEEeeeccHHHHHHHHHhc
Confidence 46789999999999999999433 221111 122445555544 234577887777888899999999
Q ss_pred CCcEEEEec--CCCChhhHHHhhhcccCCCeEeeee
Q 003819 692 DADVITIEN--SRSDEKLLSVFREGVKYRAGIGPGV 725 (793)
Q Consensus 692 ~~D~isiE~--~r~~~~~L~~~~~~~~~~~~i~~GV 725 (793)
++|.+++-. .....+.++.+++ .+...|+-+
T Consensus 80 g~~~i~~H~E~~~~~~~~i~~ik~---~g~k~Gial 112 (201)
T PF00834_consen 80 GADYITFHAEATEDPKETIKYIKE---AGIKAGIAL 112 (201)
T ss_dssp T-SEEEEEGGGTTTHHHHHHHHHH---TTSEEEEEE
T ss_pred CCCEEEEcccchhCHHHHHHHHHH---hCCCEEEEE
Confidence 999988874 3323456677776 234455444
No 73
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=89.12 E-value=5.4 Score=41.60 Aligned_cols=143 Identities=20% Similarity=0.310 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHcCCcEEEEcCcc--cccCCCCCcccHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCchhHHHHHHcC
Q 003819 614 AIKDEVEDLEKAGITVIQIDEAA--LREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDM 691 (793)
Q Consensus 614 al~~ev~~L~~aGv~~IQIDEPa--l~~~l~l~~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~C~g~~~~i~~~l~~l 691 (793)
.+.+|++.++++|+++|-+|=.- +..++. +-.+.+.+++..+ ...+.+|+=-.+-...++.+.+.
T Consensus 17 ~l~~el~~~~~agad~iH~DVMDghFVPNiT--------fGp~~v~~l~~~t-----~~p~DvHLMV~~p~~~i~~fa~a 83 (220)
T COG0036 17 RLGEELKALEAAGADLIHIDVMDGHFVPNIT--------FGPPVVKALRKIT-----DLPLDVHLMVENPDRYIEAFAKA 83 (220)
T ss_pred HHHHHHHHHHHcCCCEEEEeccCCCcCCCcc--------cCHHHHHHHhhcC-----CCceEEEEecCCHHHHHHHHHHh
Confidence 57889999999999999999533 222221 2336677777622 23477777767888999999999
Q ss_pred CCcEEEEecC--CCChhhHHHhhhcccCCCeEeeeeecCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEcCCCCCCCCChh
Q 003819 692 DADVITIENS--RSDEKLLSVFREGVKYRAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLESNILWVNPDCGLKTRKYS 769 (793)
Q Consensus 692 ~~D~isiE~~--r~~~~~L~~~~~~~~~~~~i~~GVvD~~s~~ves~eev~~~i~~al~~i~~~~l~vsPdCGL~t~~~~ 769 (793)
++|.|++-.. ....+.++.+++ .++=+|++= || +||-+..+-+..-++.+ =-.-|||+-|=..+.+
T Consensus 84 gad~It~H~E~~~~~~r~i~~Ik~-----~G~kaGv~l--nP--~Tp~~~i~~~l~~vD~V--llMsVnPGfgGQ~Fi~- 151 (220)
T COG0036 84 GADIITFHAEATEHIHRTIQLIKE-----LGVKAGLVL--NP--ATPLEALEPVLDDVDLV--LLMSVNPGFGGQKFIP- 151 (220)
T ss_pred CCCEEEEEeccCcCHHHHHHHHHH-----cCCeEEEEE--CC--CCCHHHHHHHHhhCCEE--EEEeECCCCcccccCH-
Confidence 9999987644 223445666666 245555531 22 23333333333333322 1234566555444444
Q ss_pred HHHHHHHHHHHH
Q 003819 770 EVKPALSNMVAA 781 (793)
Q Consensus 770 ~~~~kL~~mv~a 781 (793)
++..|++.+.+.
T Consensus 152 ~~l~Ki~~lr~~ 163 (220)
T COG0036 152 EVLEKIRELRAM 163 (220)
T ss_pred HHHHHHHHHHHH
Confidence 445555544443
No 74
>COG0646 MetH Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism]
Probab=87.64 E-value=29 Score=37.91 Aligned_cols=157 Identities=17% Similarity=0.173 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCcEEEEcCcccccCCCCCcccHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCC------
Q 003819 606 ETCYQIALAIKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYS------ 679 (793)
Q Consensus 606 e~~~~lA~al~~ev~~L~~aGv~~IQIDEPal~~~l~l~~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~C~g------ 679 (793)
-..+++-.+|++.+..|.+-|++.|-|.= .. |. .-++.|+.+.+.+.+.......|.+|.-.-
T Consensus 136 v~fd~l~~ay~eq~~~Li~gG~D~iLiET-~~---------D~-l~~KaA~~a~~~~~~~~~~~LPv~~s~Ti~~sG~tl 204 (311)
T COG0646 136 VTFDELVEAYREQVEGLIDGGADLILIET-IF---------DT-LNAKAAVFAAREVFEELGVRLPVMISGTITDSGRTL 204 (311)
T ss_pred ccHHHHHHHHHHHHHHHHhCCCcEEEEeh-hc---------cH-HHHHHHHHHHHHHHHhcCCcccEEEEEEEecCceec
Confidence 34678889999999999999999876652 11 11 124567777777776544344555554432
Q ss_pred ---CchhHHHHHHcCCCcEEEEecCCCChhhHHHhhhcc-cCCCeEe----eeeecCCCC---CCCCHHHHHHHHHHHHh
Q 003819 680 ---NFNDIIHSIMDMDADVITIENSRSDEKLLSVFREGV-KYRAGIG----PGVYDIHSP---RIPSTEEIADRINKMLA 748 (793)
Q Consensus 680 ---~~~~i~~~l~~l~~D~isiE~~r~~~~~L~~~~~~~-~~~~~i~----~GVvD~~s~---~ves~eev~~~i~~al~ 748 (793)
..+..+..+..+++|.+++-.+-+..+....+..-. ..+..|. .|+-+...- .-++|++++..+....+
T Consensus 205 ~Gq~~~a~~~~l~~~~~~~vGlNCa~Gp~~m~~~l~~ls~~~~~~vs~~PNAGLP~~~g~~~~Y~~~p~~~a~~~~~f~~ 284 (311)
T COG0646 205 SGQTIEAFLNSLEHLGPDAVGLNCALGPDEMRPHLRELSRIADAFVSVYPNAGLPNAFGERAVYDLTPEYMAEALAEFAE 284 (311)
T ss_pred CCCcHHHHHHHhhccCCcEEeeccccCHHHHHHHHHHHHhccCceEEEeCCCCCCcccCCccccCCCHHHHHHHHHHHHH
Confidence 257899999999999999987665433333333200 0111222 255555555 67899999999998887
Q ss_pred hcCCCcEEEcCCCCCCCCChhHHHHHHHHHHHHH
Q 003819 749 VLESNILWVNPDCGLKTRKYSEVKPALSNMVAAA 782 (793)
Q Consensus 749 ~i~~~~l~vsPdCGL~t~~~~~~~~kL~~mv~aa 782 (793)
.-+.+ +|.--||- +| +-++.|+++.
T Consensus 285 ~g~vn--IvGGCCGT---TP----eHIraia~~v 309 (311)
T COG0646 285 EGGVN--IVGGCCGT---TP----EHIRAIAEAV 309 (311)
T ss_pred hCCce--eeccccCC---CH----HHHHHHHHHh
Confidence 53333 77888886 34 3455555544
No 75
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=87.46 E-value=32 Score=36.94 Aligned_cols=151 Identities=15% Similarity=0.253 Sum_probs=76.7
Q ss_pred HHHHHHHHHcCCcEEEEcCcccccCCCCCcccHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCchhHHHHHHcCCCcE
Q 003819 616 KDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDADV 695 (793)
Q Consensus 616 ~~ev~~L~~aGv~~IQIDEPal~~~l~l~~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~C~g~~~~i~~~l~~l~~D~ 695 (793)
.+.+..+.++|+++|=|--.+-+.+.+ ..+.++..+...+.++.+.+.. +..|.+-++.. ++++.-++.+++.
T Consensus 27 ~~~a~~~~~~GAdiIDIG~~st~p~~~--~i~~~~E~~rl~~~v~~i~~~~--~~plSIDT~~~---~v~e~al~~G~~i 99 (257)
T cd00739 27 VAHAEKMIAEGADIIDIGGESTRPGAD--PVSVEEELERVIPVLEALRGEL--DVLISVDTFRA---EVARAALEAGADI 99 (257)
T ss_pred HHHHHHHHHCCCCEEEECCCcCCCCCC--CCCHHHHHHHHHHHHHHHHhcC--CCcEEEeCCCH---HHHHHHHHhCCCE
Confidence 344666778999999887333322221 1234444555554554443332 24477777753 4677777778887
Q ss_pred EE-EecCCCChhhHHHhhhcccCCCeEeeeeecCCCCCC-------CC-HHHH----HHHHHHHHhh-cCCCcEEEcCCC
Q 003819 696 IT-IENSRSDEKLLSVFREGVKYRAGIGPGVYDIHSPRI-------PS-TEEI----ADRINKMLAV-LESNILWVNPDC 761 (793)
Q Consensus 696 is-iE~~r~~~~~L~~~~~~~~~~~~i~~GVvD~~s~~v-------es-~eev----~~~i~~al~~-i~~~~l~vsPdC 761 (793)
|. +.....+.+.++..++ ++-.+.+ +-+...|.- ++ .+++ .++++.+.+. ++.+++++-|..
T Consensus 100 INdisg~~~~~~~~~l~~~---~~~~vV~-m~~~g~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Gi~~~~Ii~DPg~ 175 (257)
T cd00739 100 INDVSGGSDDPAMLEVAAE---YGAPLVL-MHMRGTPKTMQENPYYEDVVDEVLSFLEARLEAAESAGVARNRIILDPGI 175 (257)
T ss_pred EEeCCCCCCChHHHHHHHH---cCCCEEE-ECCCCCCcccccCCCcccHHHHHHHHHHHHHHHHHHcCCCHHHEEEecCC
Confidence 65 4332222445565555 2222222 211111211 11 2333 3444444432 235699999988
Q ss_pred CCCCCChhHHHHHHHHH
Q 003819 762 GLKTRKYSEVKPALSNM 778 (793)
Q Consensus 762 GL~t~~~~~~~~kL~~m 778 (793)
||.-- .+....-|+++
T Consensus 176 gf~ks-~~~~~~~l~~i 191 (257)
T cd00739 176 GFGKT-PEHNLELLRRL 191 (257)
T ss_pred CcccC-HHHHHHHHHHH
Confidence 87433 44444444444
No 76
>PRK14057 epimerase; Provisional
Probab=87.26 E-value=6.1 Score=42.25 Aligned_cols=85 Identities=15% Similarity=0.180 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHcCCcEEEEcCcc--cccCCCCCcccHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCchhHHHHHHcC
Q 003819 614 AIKDEVEDLEKAGITVIQIDEAA--LREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDM 691 (793)
Q Consensus 614 al~~ev~~L~~aGv~~IQIDEPa--l~~~l~l~~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~C~g~~~~i~~~l~~l 691 (793)
.+.+|++.|+++|+++|.+|=.- +...+. +-...+.+++. . ..+.+|+.--+-...++.+.+.
T Consensus 33 ~L~~el~~l~~~g~d~lHiDVMDG~FVPNit--------fGp~~i~~i~~---~----~p~DvHLMV~~P~~~i~~~~~a 97 (254)
T PRK14057 33 ALHRYLQQLEALNQPLLHLDLMDGQFCPQFT--------VGPWAVGQLPQ---T----FIKDVHLMVADQWTAAQACVKA 97 (254)
T ss_pred HHHHHHHHHHHCCCCEEEEeccCCccCCccc--------cCHHHHHHhcc---C----CCeeEEeeeCCHHHHHHHHHHh
Confidence 67899999999999999999422 333222 11234445532 2 3467777767878889999999
Q ss_pred CCcEEEEec--CCCChhhHHHhhh
Q 003819 692 DADVITIEN--SRSDEKLLSVFRE 713 (793)
Q Consensus 692 ~~D~isiE~--~r~~~~~L~~~~~ 713 (793)
++|.|++-. .....+.+..+++
T Consensus 98 Gad~It~H~Ea~~~~~~~l~~Ir~ 121 (254)
T PRK14057 98 GAHCITLQAEGDIHLHHTLSWLGQ 121 (254)
T ss_pred CCCEEEEeeccccCHHHHHHHHHH
Confidence 999888653 3322345666666
No 77
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=85.98 E-value=13 Score=39.00 Aligned_cols=77 Identities=18% Similarity=0.192 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHcCCcEEEEcCcc--cccCCCCCcccHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCchhHHHHHHcC
Q 003819 614 AIKDEVEDLEKAGITVIQIDEAA--LREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDM 691 (793)
Q Consensus 614 al~~ev~~L~~aGv~~IQIDEPa--l~~~l~l~~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~C~g~~~~i~~~l~~l 691 (793)
.+.+|++.|+++|+++|.+|=.. +...+. +--..++.++..+..++ ..+|+|+ -+-...++.+.+.
T Consensus 20 ~l~~~~~~l~~~~~~~~H~DimDg~fvpn~~--------~G~~~v~~lr~~~~~~~--lDvHLm~--~~p~~~i~~~~~~ 87 (228)
T PTZ00170 20 KLADEAQDVLSGGADWLHVDVMDGHFVPNLS--------FGPPVVKSLRKHLPNTF--LDCHLMV--SNPEKWVDDFAKA 87 (228)
T ss_pred HHHHHHHHHHHcCCCEEEEecccCccCCCcC--------cCHHHHHHHHhcCCCCC--EEEEECC--CCHHHHHHHHHHc
Confidence 67899999999999999999422 221111 11244556655432332 3455553 3555677889999
Q ss_pred CCcEEEEecCC
Q 003819 692 DADVITIENSR 702 (793)
Q Consensus 692 ~~D~isiE~~r 702 (793)
++|.+++-...
T Consensus 88 Gad~itvH~ea 98 (228)
T PTZ00170 88 GASQFTFHIEA 98 (228)
T ss_pred CCCEEEEeccC
Confidence 99999887543
No 78
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=84.57 E-value=52 Score=35.91 Aligned_cols=153 Identities=14% Similarity=0.160 Sum_probs=83.2
Q ss_pred HHHHHHHHHHcCCcEEEEcCcccccCCCCCcccHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCchhHHHHHHcCCCc
Q 003819 615 IKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDAD 694 (793)
Q Consensus 615 l~~ev~~L~~aGv~~IQIDEPal~~~l~l~~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~C~g~~~~i~~~l~~l~~D 694 (793)
..+.+..+.+.|+++|=|=-.+-+.+.+ ..+.++.++..++.++.+.+... ..|.+-++.. ++++..++.++|
T Consensus 40 a~~~a~~~~~~GAdIIDIGgeSTrPg~~--~v~~eeE~~Rv~pvI~~l~~~~~--~~ISIDT~~~---~va~~AL~~Gad 112 (282)
T PRK11613 40 AVKHANLMINAGATIIDVGGESTRPGAA--EVSVEEELDRVIPVVEAIAQRFE--VWISVDTSKP---EVIRESAKAGAH 112 (282)
T ss_pred HHHHHHHHHHCCCcEEEECCCCCCCCCC--CCCHHHHHHHHHHHHHHHHhcCC--CeEEEECCCH---HHHHHHHHcCCC
Confidence 3445677888999999998766655432 23456666677777766654432 4578888854 477777788999
Q ss_pred EEEEecCCCChhhHHHhhhcccCCCeEeeeeecC--CC----CCCCC-H----HHHHHHHHHHHhh-cCCCcEEEcCCCC
Q 003819 695 VITIENSRSDEKLLSVFREGVKYRAGIGPGVYDI--HS----PRIPS-T----EEIADRINKMLAV-LESNILWVNPDCG 762 (793)
Q Consensus 695 ~isiE~~r~~~~~L~~~~~~~~~~~~i~~GVvD~--~s----~~ves-~----eev~~~i~~al~~-i~~~~l~vsPdCG 762 (793)
.|.==..-.+.+.++..++ + +-.+.+--..+ .+ +.-++ . +.+.++++.+.+. ++.+++++-|.=|
T Consensus 113 iINDI~g~~d~~~~~~~a~-~--~~~vVlmh~~g~p~~~~~~~~y~dv~~~v~~~l~~~i~~a~~~GI~~~~IilDPGiG 189 (282)
T PRK11613 113 IINDIRSLSEPGALEAAAE-T--GLPVCLMHMQGNPKTMQEAPKYDDVFAEVNRYFIEQIARCEAAGIAKEKLLLDPGFG 189 (282)
T ss_pred EEEECCCCCCHHHHHHHHH-c--CCCEEEEcCCCCCCccccCCCcccHHHHHHHHHHHHHHHHHHcCCChhhEEEeCCCC
Confidence 8721111113344565555 2 22222211110 01 01011 1 2334555555443 3456999999888
Q ss_pred CCCCChhHHHHHHHHH
Q 003819 763 LKTRKYSEVKPALSNM 778 (793)
Q Consensus 763 L~t~~~~~~~~kL~~m 778 (793)
|.. +.++..+-|+++
T Consensus 190 F~k-~~~~n~~ll~~l 204 (282)
T PRK11613 190 FGK-NLSHNYQLLARL 204 (282)
T ss_pred cCC-CHHHHHHHHHHH
Confidence 743 333444444443
No 79
>COG0646 MetH Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism]
Probab=84.09 E-value=9.1 Score=41.62 Aligned_cols=143 Identities=19% Similarity=0.248 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHHHHHHCCCCEEEeeccccccCCChHHHHHHHHHHHHHHhccCCCcEEEEeccCCCc--------hhhH
Q 003819 181 IDKIIPVYKEVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVP--------AETY 252 (793)
Q Consensus 181 l~~L~~~Y~~~l~~L~~aG~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~--------~~~~ 252 (793)
+++|..+|++.++.|.+-|++.+-|. .+.-++....-+.+.+++++.... ++.++++.-+.+-+ +..+
T Consensus 138 fd~l~~ay~eq~~~Li~gG~D~iLiE-T~~D~l~~KaA~~a~~~~~~~~~~---~LPv~~s~Ti~~sG~tl~Gq~~~a~~ 213 (311)
T COG0646 138 FDELVEAYREQVEGLIDGGADLILIE-TIFDTLNAKAAVFAAREVFEELGV---RLPVMISGTITDSGRTLSGQTIEAFL 213 (311)
T ss_pred HHHHHHHHHHHHHHHHhCCCcEEEEe-hhccHHHHHHHHHHHHHHHHhcCC---cccEEEEEEEecCceecCCCcHHHHH
Confidence 68999999999999999999987664 332222112223333444443322 34566654332111 5667
Q ss_pred HHHhcCCCccEEEEEeccCCCChhhHhhhC--CCCCEEE----EEEeeCCCC---CCCCHHHHHHHHHHHhhhcCCCcEE
Q 003819 253 KILTSLKGVTGFGFDLIRGTKTLDLIKTEF--PLGKYLF----AGVVDGRNI---WANDLASSLTTLQDLAGTVGKDKVV 323 (793)
Q Consensus 253 ~~l~~lp~Vd~l~lD~~~~~~~l~~l~~~~--p~~k~l~----lGvVdgrn~---w~ed~~~i~~~i~~~~~~v~~e~l~ 323 (793)
..|..++ +|.++|....++..+.+..+.+ ..+..|+ +|+=|-.+- ..++++...+.+....+.-+. | +
T Consensus 214 ~~l~~~~-~~~vGlNCa~Gp~~m~~~l~~ls~~~~~~vs~~PNAGLP~~~g~~~~Y~~~p~~~a~~~~~f~~~g~v-n-I 290 (311)
T COG0646 214 NSLEHLG-PDAVGLNCALGPDEMRPHLRELSRIADAFVSVYPNAGLPNAFGERAVYDLTPEYMAEALAEFAEEGGV-N-I 290 (311)
T ss_pred HHhhccC-CcEEeeccccCHHHHHHHHHHHHhccCceEEEeCCCCCCcccCCccccCCCHHHHHHHHHHHHHhCCc-e-e
Confidence 7888899 9999999988875554443322 2455555 366665555 999999999999877653221 2 3
Q ss_pred EeCCCCC
Q 003819 324 VSTSCSL 330 (793)
Q Consensus 324 vspsCgL 330 (793)
|.-=||=
T Consensus 291 vGGCCGT 297 (311)
T COG0646 291 VGGCCGT 297 (311)
T ss_pred eccccCC
Confidence 4556664
No 80
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=83.90 E-value=14 Score=38.92 Aligned_cols=86 Identities=20% Similarity=0.296 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHcCCcEEEEcCcc--cccCCCCCcccHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCchhHHHHHHcC
Q 003819 614 AIKDEVEDLEKAGITVIQIDEAA--LREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDM 691 (793)
Q Consensus 614 al~~ev~~L~~aGv~~IQIDEPa--l~~~l~l~~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~C~g~~~~i~~~l~~l 691 (793)
-+.+|++.|++ |+++|.+|=.- +...+. +-...+.+++..+ . ..+.+|+.-.+-...++.+.+.
T Consensus 16 ~l~~el~~l~~-g~d~lH~DiMDG~FVPN~t--------fg~~~i~~ir~~t-~----~~~DvHLMv~~P~~~i~~~~~a 81 (229)
T PRK09722 16 KFKEQIEFLNS-KADYFHIDIMDGHFVPNLT--------LSPFFVSQVKKLA-S----KPLDVHLMVTDPQDYIDQLADA 81 (229)
T ss_pred HHHHHHHHHHh-CCCEEEEecccCccCCCcc--------cCHHHHHHHHhcC-C----CCeEEEEEecCHHHHHHHHHHc
Confidence 57788999988 99999999422 222221 1223556666532 2 3477787767878889999999
Q ss_pred CCcEEEEecC--C-CChhhHHHhhh
Q 003819 692 DADVITIENS--R-SDEKLLSVFRE 713 (793)
Q Consensus 692 ~~D~isiE~~--r-~~~~~L~~~~~ 713 (793)
++|.|++-.. . .....++.+++
T Consensus 82 Gad~it~H~Ea~~~~~~~~i~~Ik~ 106 (229)
T PRK09722 82 GADFITLHPETINGQAFRLIDEIRR 106 (229)
T ss_pred CCCEEEECccCCcchHHHHHHHHHH
Confidence 9998776533 2 22345666666
No 81
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=83.46 E-value=49 Score=34.27 Aligned_cols=152 Identities=16% Similarity=0.241 Sum_probs=84.8
Q ss_pred HHHHHHcCCcEEEEcCcccccCCCCCcccHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCchhHHHHHHcCCCcEEEE
Q 003819 619 VEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDADVITI 698 (793)
Q Consensus 619 v~~L~~aGv~~IQIDEPal~~~l~l~~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~C~g~~~~i~~~l~~l~~D~isi 698 (793)
+..+.++|+++|=|---+.+.+.. ..+..+.++|.++.++.+.+.. .++.|.+-+++. ++++..++.+++.|.=
T Consensus 25 a~~~~~~GAdiIDIg~~st~p~~~--~v~~~eE~~rl~~~l~~i~~~~-~~~plSIDT~~~---~v~~~aL~~g~~~ind 98 (210)
T PF00809_consen 25 AREQVEAGADIIDIGAESTRPGAT--PVSEEEEMERLVPVLQAIREEN-PDVPLSIDTFNP---EVAEAALKAGADIIND 98 (210)
T ss_dssp HHHHHHTT-SEEEEESSTSSTTSS--SSHHHHHHHHHHHHHHHHHHHH-TTSEEEEEESSH---HHHHHHHHHTSSEEEE
T ss_pred HHHHHHhcCCEEEecccccCCCCC--cCCHHHHHHHHHHHHHHHhccC-CCeEEEEECCCH---HHHHHHHHcCcceEEe
Confidence 778889999999987544443321 2245667788888888777511 124588888853 4666666668886543
Q ss_pred ecCCC-ChhhHHHhhhcccCCCeEeeeeecCCCCCCC-CHH---HHHHHHHHHHhh---------cCCCcEEEcCCCCCC
Q 003819 699 ENSRS-DEKLLSVFREGVKYRAGIGPGVYDIHSPRIP-STE---EIADRINKMLAV---------LESNILWVNPDCGLK 764 (793)
Q Consensus 699 E~~r~-~~~~L~~~~~~~~~~~~i~~GVvD~~s~~ve-s~e---ev~~~i~~al~~---------i~~~~l~vsPdCGL~ 764 (793)
-..-. +.+.+...++ ++..+.+=-.+.....++ +++ ++...+...++. ++.+++++-|.=|+
T Consensus 99 ~~~~~~~~~~~~l~a~---~~~~vV~m~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~l~~~Gi~~~~Ii~DPgigf- 174 (210)
T PF00809_consen 99 ISGFEDDPEMLPLAAE---YGAPVVLMHSDGNPKGMPETADYRLDIAEEIIEFLEERIEALEKAGIPRERIILDPGIGF- 174 (210)
T ss_dssp TTTTSSSTTHHHHHHH---HTSEEEEESESSETTTTTSSHHHSHSHHHHHHHHHHHHHHHHHHTT--GGGEEEETTTTS-
T ss_pred cccccccchhhhhhhc---CCCEEEEEecccccccccccchhhhhHHHHHHHHHHHHHHHHHHcCCCHHHEeeccccCc-
Confidence 33212 4455666666 233222222221111121 232 233333333332 44599999999999
Q ss_pred CCChhHHHHHHHHHHH
Q 003819 765 TRKYSEVKPALSNMVA 780 (793)
Q Consensus 765 t~~~~~~~~kL~~mv~ 780 (793)
..+.+....-|+++..
T Consensus 175 ~~~~~~~~~~l~~i~~ 190 (210)
T PF00809_consen 175 GKDPEQNLELLRNIEE 190 (210)
T ss_dssp STTHHHHHHHHHTHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 6666666666666544
No 82
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=82.67 E-value=11 Score=37.56 Aligned_cols=111 Identities=17% Similarity=0.187 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHCCCCEEEeeccccccCCChHHHHHHHHHHHHHHhccCCCcEEEEeccCCCchhhHHHHhcCCCccEEEE
Q 003819 187 VYKEVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGF 266 (793)
Q Consensus 187 ~Y~~~l~~L~~aG~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~lp~Vd~l~l 266 (793)
.+.+.++++.++|+.+||||.+-. +......+.+.+..+.... +++++++.+ ++...+.+ .|++|+
T Consensus 13 ~~~~~l~~l~~~g~~~i~lr~~~~----~~~~~~~~~~~i~~~~~~~-~~~l~~~~~--------~~~a~~~g-~~~vh~ 78 (196)
T cd00564 13 DLLEVVEAALKGGVTLVQLREKDL----SARELLELARALRELCRKY-GVPLIINDR--------VDLALAVG-ADGVHL 78 (196)
T ss_pred hHHHHHHHHHhcCCCEEEEeCCCC----CHHHHHHHHHHHHHHHHHh-CCeEEEeCh--------HHHHHHcC-CCEEec
Confidence 355678888899999999998743 2222222222232222211 356766532 44567788 999999
Q ss_pred EeccCCCChhhHhhhCCCCCEEEEEEeeCCCCCCCCHHHHHHHHHHHhhhcCCCcEEEeC
Q 003819 267 DLIRGTKTLDLIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVST 326 (793)
Q Consensus 267 D~~~~~~~l~~l~~~~p~~k~l~lGvVdgrn~w~ed~~~i~~~i~~~~~~v~~e~l~vsp 326 (793)
+.... ....+....+.++.+++.+ .+.+++ +++.+ .|.+-+.++|
T Consensus 79 ~~~~~--~~~~~~~~~~~~~~~g~~~--------~t~~~~----~~~~~-~g~d~i~~~~ 123 (196)
T cd00564 79 GQDDL--PVAEARALLGPDLIIGVST--------HSLEEA----LRAEE-LGADYVGFGP 123 (196)
T ss_pred CcccC--CHHHHHHHcCCCCEEEeeC--------CCHHHH----HHHhh-cCCCEEEECC
Confidence 85332 2233333233455555443 233443 33332 4567888765
No 83
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=82.32 E-value=76 Score=34.05 Aligned_cols=154 Identities=16% Similarity=0.266 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHcCCcEEEEcCcccccCCCCCcccHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCchhHHHHHHcCCC
Q 003819 614 AIKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDA 693 (793)
Q Consensus 614 al~~ev~~L~~aGv~~IQIDEPal~~~l~l~~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~C~g~~~~i~~~l~~l~~ 693 (793)
.+.+.++.+.++|+++|=|--.+.+.+.+ ..+.++..++....++.+.+.. +..|.+|++.. ++++.-.+.++
T Consensus 24 ~~~~~a~~~~~~GA~iIDIG~~st~p~~~--~i~~~~E~~rl~~~v~~~~~~~--~~plsiDT~~~---~vi~~al~~G~ 96 (257)
T TIGR01496 24 KAVAHAERMLEEGADIIDVGGESTRPGAD--RVSPEEELNRVVPVIKALRDQP--DVPISVDTYRA---EVARAALEAGA 96 (257)
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCCCCCC--CCCHHHHHHHHHHHHHHHHhcC--CCeEEEeCCCH---HHHHHHHHcCC
Confidence 44556777889999999995322222211 1133434333444444333322 24688888843 46666666687
Q ss_pred cEEE-EecCCCChhhHHHhhhcccCCCeEeeeeecCCCCCC-------CC-HHHH----HHHHHHHHhh-cCCCcEEEcC
Q 003819 694 DVIT-IENSRSDEKLLSVFREGVKYRAGIGPGVYDIHSPRI-------PS-TEEI----ADRINKMLAV-LESNILWVNP 759 (793)
Q Consensus 694 D~is-iE~~r~~~~~L~~~~~~~~~~~~i~~GVvD~~s~~v-------es-~eev----~~~i~~al~~-i~~~~l~vsP 759 (793)
+.|. +.... +.+.++.+++ ++-.+.+ +-+...|.- ++ .+++ .++++++.+. ++.+++++.|
T Consensus 97 ~iINsis~~~-~~~~~~l~~~---~~~~vV~-m~~~g~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Gi~~~~iilDP 171 (257)
T TIGR01496 97 DIINDVSGGQ-DPAMLEVAAE---YGVPLVL-MHMRGTPRTMQENPHYEDVVEEVLRFLEARAEELVAAGVAAERIILDP 171 (257)
T ss_pred CEEEECCCCC-CchhHHHHHH---cCCcEEE-EeCCCCCcccccCCCcccHHHHHHHHHHHHHHHHHHcCCCHHHEEEEC
Confidence 7553 11111 3345565555 2223333 211111111 11 2333 3444444332 3458999999
Q ss_pred CCCCCCCChhHHHHHHHHHHH
Q 003819 760 DCGLKTRKYSEVKPALSNMVA 780 (793)
Q Consensus 760 dCGL~t~~~~~~~~kL~~mv~ 780 (793)
..||.- +.+....-|+++-+
T Consensus 172 g~gf~k-s~~~~~~~l~~i~~ 191 (257)
T TIGR01496 172 GIGFGK-TPEHNLELLKHLEE 191 (257)
T ss_pred CCCccc-CHHHHHHHHHHHHH
Confidence 888765 45555555555543
No 84
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=80.87 E-value=76 Score=34.15 Aligned_cols=154 Identities=14% Similarity=0.138 Sum_probs=89.3
Q ss_pred HHHHHHHHHcCCcEEEEcCcccccCCCCCcccHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCc-hhHHHHHHcCCCc
Q 003819 616 KDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNF-NDIIHSIMDMDAD 694 (793)
Q Consensus 616 ~~ev~~L~~aGv~~IQIDEPal~~~l~l~~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~C~g~~-~~i~~~l~~l~~D 694 (793)
.+.++.|.++|+++|.+==|+..+.-. . ....|.+ .+.++.+.+...+.+++..+.=.+.. .+.++...+.++|
T Consensus 23 ~~ia~~L~~~GVd~IEvG~~~~~~~~~-~--~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~gv~ 97 (266)
T cd07944 23 KAIYRALAAAGIDYVEIGYRSSPEKEF-K--GKSAFCD--DEFLRRLLGDSKGNTKIAVMVDYGNDDIDLLEPASGSVVD 97 (266)
T ss_pred HHHHHHHHHCCCCEEEeecCCCCcccc-C--CCccCCC--HHHHHHHHhhhccCCEEEEEECCCCCCHHHHHHHhcCCcC
Confidence 344567889999999887776542100 0 0000110 12233333333224566655333321 2345556788899
Q ss_pred EEEEecCCCChhhH-HHhhhcccCCCeEeeeeecCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEcCCCCCCCCChhHHHH
Q 003819 695 VITIENSRSDEKLL-SVFREGVKYRAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLESNILWVNPDCGLKTRKYSEVKP 773 (793)
Q Consensus 695 ~isiE~~r~~~~~L-~~~~~~~~~~~~i~~GVvD~~s~~ves~eev~~~i~~al~~i~~~~l~vsPdCGL~t~~~~~~~~ 773 (793)
.+.+-...+..+.+ +.++.....+..+.+++.|+.. -+++.+.+.++++.+ .|++++.+.-..|.. +|+++..
T Consensus 98 ~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~a~~---~~~~~~~~~~~~~~~-~g~~~i~l~DT~G~~--~P~~v~~ 171 (266)
T cd07944 98 MIRVAFHKHEFDEALPLIKAIKEKGYEVFFNLMAISG---YSDEELLELLELVNE-IKPDVFYIVDSFGSM--YPEDIKR 171 (266)
T ss_pred EEEEecccccHHHHHHHHHHHHHCCCeEEEEEEeecC---CCHHHHHHHHHHHHh-CCCCEEEEecCCCCC--CHHHHHH
Confidence 98887554443332 2222111134578899888765 478999999988876 589999999888875 6766655
Q ss_pred HHHHHHH
Q 003819 774 ALSNMVA 780 (793)
Q Consensus 774 kL~~mv~ 780 (793)
-++.+.+
T Consensus 172 lv~~l~~ 178 (266)
T cd07944 172 IISLLRS 178 (266)
T ss_pred HHHHHHH
Confidence 5555543
No 85
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=79.73 E-value=81 Score=35.27 Aligned_cols=149 Identities=12% Similarity=0.200 Sum_probs=86.9
Q ss_pred HHHHHHHHHHcCCcEEEEcC------cccccCCCCCcccHHHHHHHHHHHHHHHhcCCCCCCeEEEEe--CCCCchhHHH
Q 003819 615 IKDEVEDLEKAGITVIQIDE------AALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHM--CYSNFNDIIH 686 (793)
Q Consensus 615 l~~ev~~L~~aGv~~IQIDE------Pal~~~l~l~~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~--C~g~~~~i~~ 686 (793)
..+.++.|.++|+++|.+== ..+..+.+.. +..+ .++.+.+.++ .+++...+ .+++..+ ++
T Consensus 27 ~~~i~~~L~~aGv~~IEvg~~~g~g~~s~~~g~~~~--~~~e-------~i~~~~~~~~-~~~~~~ll~pg~~~~~d-l~ 95 (337)
T PRK08195 27 VRAIARALDAAGVPVIEVTHGDGLGGSSFNYGFGAH--TDEE-------YIEAAAEVVK-QAKIAALLLPGIGTVDD-LK 95 (337)
T ss_pred HHHHHHHHHHcCCCEEEeecCCCCCCccccCCCCCC--CHHH-------HHHHHHHhCC-CCEEEEEeccCcccHHH-HH
Confidence 34556778899999999931 1222121111 1112 2222323333 35555544 3455544 56
Q ss_pred HHHcCCCcEEEEecCCCChhhH-HHhhhcccCCCeEeeeeecCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEcCCCCCCC
Q 003819 687 SIMDMDADVITIENSRSDEKLL-SVFREGVKYRAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLESNILWVNPDCGLKT 765 (793)
Q Consensus 687 ~l~~l~~D~isiE~~r~~~~~L-~~~~~~~~~~~~i~~GVvD~~s~~ves~eev~~~i~~al~~i~~~~l~vsPdCGL~t 765 (793)
...+.++|.+-+-+..++.+.. +.++.....+..+...+.+++ ..+++++.+.++.+.+ .|++.+.+.-..|..
T Consensus 96 ~a~~~gvd~iri~~~~~e~~~~~~~i~~ak~~G~~v~~~l~~a~---~~~~e~l~~~a~~~~~-~Ga~~i~i~DT~G~~- 170 (337)
T PRK08195 96 MAYDAGVRVVRVATHCTEADVSEQHIGLARELGMDTVGFLMMSH---MAPPEKLAEQAKLMES-YGAQCVYVVDSAGAL- 170 (337)
T ss_pred HHHHcCCCEEEEEEecchHHHHHHHHHHHHHCCCeEEEEEEecc---CCCHHHHHHHHHHHHh-CCCCEEEeCCCCCCC-
Confidence 7778899998877544433222 222211123456777787774 3588999999888876 588999998888864
Q ss_pred CChhHHHHHHHHHHH
Q 003819 766 RKYSEVKPALSNMVA 780 (793)
Q Consensus 766 ~~~~~~~~kL~~mv~ 780 (793)
+|+++..-++.+.+
T Consensus 171 -~P~~v~~~v~~l~~ 184 (337)
T PRK08195 171 -LPEDVRDRVRALRA 184 (337)
T ss_pred -CHHHHHHHHHHHHH
Confidence 67666555555443
No 86
>PRK03512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=78.36 E-value=15 Score=38.23 Aligned_cols=107 Identities=12% Similarity=0.060 Sum_probs=62.0
Q ss_pred HHHHHHHCCCCEEEeeccccccCCChHHHHHHHHHHHHHHhccCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEEecc
Q 003819 191 VVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLIR 270 (793)
Q Consensus 191 ~l~~L~~aG~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~lp~Vd~l~lD~~~ 270 (793)
.++++.++|+.+||+-++-+. ..+...+......+.+.. +.+++|+.. ++....++ .||+||...+
T Consensus 24 ~l~~~l~~G~~~vqLR~k~~~----~~~~~~la~~l~~~~~~~-~~~liInd~--------~~lA~~~~-adGVHlg~~d 89 (211)
T PRK03512 24 WIERLLDAGVRTLQLRIKDRR----DEEVEADVVAAIALGRRY-QARLFINDY--------WRLAIKHQ-AYGVHLGQED 89 (211)
T ss_pred HHHHHHhCCCCEEEEcCCCCC----HHHHHHHHHHHHHHHHHh-CCeEEEeCH--------HHHHHHcC-CCEEEcChHh
Confidence 478888999999999988754 334444333333443322 357777743 34556678 9999997543
Q ss_pred CCCChhhHhhhCCCCCEEEEEEeeCCCCCCCCHHHHHHHHHHHhhhcCCCcEEEeC
Q 003819 271 GTKTLDLIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVST 326 (793)
Q Consensus 271 ~~~~l~~l~~~~p~~k~l~lGvVdgrn~w~ed~~~i~~~i~~~~~~v~~e~l~vsp 326 (793)
- .....+..++.++.|++-+ .+.+++ .++. ..|.|-+.++|
T Consensus 90 ~--~~~~~r~~~~~~~~iG~S~--------H~~~e~----~~A~-~~gaDYi~lgp 130 (211)
T PRK03512 90 L--ETADLNAIRAAGLRLGVST--------HDDMEI----DVAL-AARPSYIALGH 130 (211)
T ss_pred C--CHHHHHHhcCCCCEEEEeC--------CCHHHH----HHHh-hcCCCEEEECC
Confidence 2 1223333345555544433 345554 3332 24567788877
No 87
>KOG2872 consensus Uroporphyrinogen decarboxylase [Coenzyme transport and metabolism]
Probab=77.75 E-value=9 Score=41.36 Aligned_cols=161 Identities=14% Similarity=0.194 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEEeeccccccCCChHHHHHHHHHH-----HHHHhcc-----CCCcEEEEeccCCCc
Q 003819 179 SLIDKIIPVYKEVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAY-----SELQSSL-----SGLNVLIETYFADVP 248 (793)
Q Consensus 179 ~ll~~L~~~Y~~~l~~L~~aG~~~VQiDEP~L~~d~~~~~~~~~~~~y-----~~l~~~~-----~~~~i~l~tyfg~~~ 248 (793)
.||..|.++..+-|..=..+|+..+||=| .|+..++.++.+.+..=| +++.+.. +.+.+++ |-.+.
T Consensus 186 ~lL~~lTda~v~Yl~~Qv~aGAq~lQiFe-SwageLspe~f~e~s~PYl~~I~~~Vk~rl~~~~~~~vPmi~--fakG~- 261 (359)
T KOG2872|consen 186 ALLQILTDAIVEYLVYQVVAGAQALQIFE-SWAGELSPEDFEEFSLPYLRQIAEAVKKRLPELGLAPVPMIL--FAKGS- 261 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHH-HhcccCCHHHHHHhhhHHHHHHHHHHHHhhhhhcCCCCceEE--EEcCc-
Confidence 46777777777777777889999999988 567678777655543333 2222211 1123332 22222
Q ss_pred hhhHHHHhcCCCccEEEEEeccCCCChhhHhhhCCCCCEEEEEEeeCCCCCCCCHHHHHHHHHHHhhhcCCCcEEEeCCC
Q 003819 249 AETYKILTSLKGVTGFGFDLIRGTKTLDLIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVSTSC 328 (793)
Q Consensus 249 ~~~~~~l~~lp~Vd~l~lD~~~~~~~l~~l~~~~p~~k~l~lGvVdgrn~w~ed~~~i~~~i~~~~~~v~~e~l~vspsC 328 (793)
...++.++++. +|.++||+.-++.+ ... .+.+ .+-.=|=+|. ++--.+.+++-+++++..+..|+++-+++=--
T Consensus 262 g~~Le~l~~tG-~DVvgLDWTvdp~e--ar~-~~g~-~VtlQGNlDP-~~ly~s~e~it~~v~~mv~~fG~~ryI~NLGH 335 (359)
T KOG2872|consen 262 GGALEELAQTG-YDVVGLDWTVDPAE--ARR-RVGN-RVTLQGNLDP-GVLYGSKEEITQLVKQMVKDFGKSRYIANLGH 335 (359)
T ss_pred chHHHHHHhcC-CcEEeecccccHHH--HHH-hhCC-ceEEecCCCh-HHhcCCHHHHHHHHHHHHHHhCccceEEecCC
Confidence 45789999999 99999999854321 111 1322 2334465565 44556889999999999999998888877655
Q ss_pred CCcccccccccccCCcHHHHhHHHHHHHHHHHH
Q 003819 329 SLLHTAVDLENETKLDQEIKSWLAFAAQKVVEV 361 (793)
Q Consensus 329 gL~hvP~~~~~E~~l~~~~~~~lafA~qKl~El 361 (793)
|.. |- .|++ ..+|-.|++.++
T Consensus 336 Gi~--p~-------tp~e---~v~~f~E~~h~~ 356 (359)
T KOG2872|consen 336 GIT--PG-------TPPE---HVAHFVEAVHKI 356 (359)
T ss_pred CCC--CC-------CCHH---HHHHHHHHHHHh
Confidence 543 42 2444 344566666554
No 88
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=77.20 E-value=45 Score=33.06 Aligned_cols=71 Identities=18% Similarity=0.229 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHcCCcEEEEcCcccccCCCCCcccHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCchhHHHHHHcCCC
Q 003819 614 AIKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDA 693 (793)
Q Consensus 614 al~~ev~~L~~aGv~~IQIDEPal~~~l~l~~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~C~g~~~~i~~~l~~l~~ 693 (793)
.+.+.++.+.++|++.||+|.+... ...+.+. +..++..+... +..+.+| +-++...+.++
T Consensus 13 ~~~~~l~~l~~~g~~~i~lr~~~~~---------~~~~~~~-~~~i~~~~~~~--~~~l~~~-------~~~~~a~~~g~ 73 (196)
T cd00564 13 DLLEVVEAALKGGVTLVQLREKDLS---------ARELLEL-ARALRELCRKY--GVPLIIN-------DRVDLALAVGA 73 (196)
T ss_pred hHHHHHHHHHhcCCCEEEEeCCCCC---------HHHHHHH-HHHHHHHHHHh--CCeEEEe-------ChHHHHHHcCC
Confidence 3556778888999999999987542 1223332 23344433322 1234443 23566788999
Q ss_pred cEEEEecCCC
Q 003819 694 DVITIENSRS 703 (793)
Q Consensus 694 D~isiE~~r~ 703 (793)
|+++++....
T Consensus 74 ~~vh~~~~~~ 83 (196)
T cd00564 74 DGVHLGQDDL 83 (196)
T ss_pred CEEecCcccC
Confidence 9999996543
No 89
>PRK13753 dihydropteroate synthase; Provisional
Probab=76.90 E-value=1.2e+02 Score=33.10 Aligned_cols=149 Identities=14% Similarity=0.155 Sum_probs=83.8
Q ss_pred HHHHHHHHHcCCcEEEEcCcccccCCCCCcccHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCchhHHHHHHcCCCcE
Q 003819 616 KDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDADV 695 (793)
Q Consensus 616 ~~ev~~L~~aGv~~IQIDEPal~~~l~l~~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~C~g~~~~i~~~l~~l~~D~ 695 (793)
.+.+..+.+.|+++|=|=-.+-+.+. ...+.++.++..++.++.+.+. ...|.+-++.. +++....+.++|.
T Consensus 28 ~~~a~~m~~~GAdIIDIGgeSTrPga--~~vs~eeE~~Rv~pvI~~l~~~---~~~ISIDT~~~---~va~~al~aGadi 99 (279)
T PRK13753 28 VTAAIEMLRVGSDVVDVGPAASHPDA--RPVSPADEIRRIAPLLDALSDQ---MHRVSIDSFQP---ETQRYALKRGVGY 99 (279)
T ss_pred HHHHHHHHHCCCcEEEECCCCCCCCC--CcCCHHHHHHHHHHHHHHHHhC---CCcEEEECCCH---HHHHHHHHcCCCE
Confidence 34456678899999988776665442 2234556666566666655442 23578888864 4777888889986
Q ss_pred EEEecCC-CChhhHHHhhhcccCCCeEeeeeecCCC-------C-----CCCC-HHHH----HHHHHHHHhh-cCCCcEE
Q 003819 696 ITIENSR-SDEKLLSVFREGVKYRAGIGPGVYDIHS-------P-----RIPS-TEEI----ADRINKMLAV-LESNILW 756 (793)
Q Consensus 696 isiE~~r-~~~~~L~~~~~~~~~~~~i~~GVvD~~s-------~-----~ves-~eev----~~~i~~al~~-i~~~~l~ 756 (793)
|. |.+. .+.+.++.+.+ . + +++|=.|+ + .-++ .++| .+++..+.+. ++.++++
T Consensus 100 IN-DVsg~~d~~~~~vva~-~--~----~~vVlmH~~~~~~~~~~~~~~~~~dv~~ev~~~l~~~i~~~~~~Gi~~~~Ii 171 (279)
T PRK13753 100 LN-DIQGFPDPALYPDIAE-A--D----CRLVVMHSAQRDGIATRTGHLRPEDALDEIVRFFEARVSALRRSGVAADRLI 171 (279)
T ss_pred EE-eCCCCCchHHHHHHHH-c--C----CCEEEEecCCCCCCCCcccCCCcchHHHHHHHHHHHHHHHHHHcCCChhhEE
Confidence 54 3221 24444555554 1 1 22222222 1 0111 2233 3445555543 3458999
Q ss_pred EcCCCCCC-CCChhHHHHHHHHHHH
Q 003819 757 VNPDCGLK-TRKYSEVKPALSNMVA 780 (793)
Q Consensus 757 vsPdCGL~-t~~~~~~~~kL~~mv~ 780 (793)
+-|+-||. .-+.++-+.-|+++-+
T Consensus 172 lDPGiGF~k~k~~~~n~~ll~~l~~ 196 (279)
T PRK13753 172 LDPGMGFFLSPAPETSLHVLSNLQK 196 (279)
T ss_pred EeCCCCCCCCCChHHHHHHHHhHHH
Confidence 99999984 3455555555555533
No 90
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=75.16 E-value=1.5e+02 Score=33.26 Aligned_cols=231 Identities=16% Similarity=0.214 Sum_probs=117.3
Q ss_pred HHHHHHcCCCcc-cCCCCccchhHHHHHhhccCceee-ccceeeecCCccccCcEEEccCCCCCCcch-hHHHHHHhcCC
Q 003819 503 VKLQEELDIDVL-VHGEPERNDMVEYFGEQLSGFAFT-VNGWVQSYGSRCVKPPIIYGDVSRPKAMTV-FWSSMAQSMTK 579 (793)
Q Consensus 503 i~~Q~~~Gldvi-~~Ge~~r~d~v~~f~e~l~G~~~~-~~g~v~~~~~~~~~~P~i~g~v~~~~~~~~-~~~~~aq~~t~ 579 (793)
+..+|+.|...- .+|+ ..|+++.+.+ .|+-.- -+=|+-.++ .+...+ .-.+.|++...
T Consensus 9 ~~~~E~~G~~f~~~~G~--~~d~~~ilk~--~G~N~vRlRvwv~P~~---------------~g~~~~~~~~~~akrak~ 69 (332)
T PF07745_consen 9 LPEMEAAGVKFYDENGQ--EKDLFQILKD--HGVNAVRLRVWVNPYD---------------GGYNDLEDVIALAKRAKA 69 (332)
T ss_dssp HHHHHHTT---B-TTSS--B--HHHHHHH--TT--EEEEEE-SS-TT---------------TTTTSHHHHHHHHHHHHH
T ss_pred HHHHHHcCCeEECCCCC--CCCHHHHHHh--cCCCeEEEEeccCCcc---------------cccCCHHHHHHHHHHHHH
Confidence 456788898854 5775 4688887776 443210 011222221 111111 22334444433
Q ss_pred CCceeeechHHHHhhccc---cc--------CCCChHHHHHHHHHHHHHHHHHHHHcCCc--EEEEc-CcccccCCCC-C
Q 003819 580 RPMKGMLTGPVTILNWSF---VR--------NDQPRFETCYQIALAIKDEVEDLEKAGIT--VIQID-EAALREGLPL-R 644 (793)
Q Consensus 580 kpvK~~LtGPvTll~~s~---~~--------~~~~~~e~~~~lA~al~~ev~~L~~aGv~--~IQID-EPal~~~l~l-~ 644 (793)
.-+|.+| ++.+..+ +. ...+..++..++..--++-+.+|.++|+. +|||= |-...-..|. +
T Consensus 70 ~Gm~vll----dfHYSD~WaDPg~Q~~P~aW~~~~~~~l~~~v~~yT~~vl~~l~~~G~~pd~VQVGNEin~Gmlwp~g~ 145 (332)
T PF07745_consen 70 AGMKVLL----DFHYSDFWADPGKQNKPAAWANLSFDQLAKAVYDYTKDVLQALKAAGVTPDMVQVGNEINNGMLWPDGK 145 (332)
T ss_dssp TT-EEEE----EE-SSSS--BTTB-B--TTCTSSSHHHHHHHHHHHHHHHHHHHHHTT--ESEEEESSSGGGESTBTTTC
T ss_pred CCCeEEE----eecccCCCCCCCCCCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCccEEEeCccccccccCcCCC
Confidence 5677776 3443222 11 12367788888888888899999999986 79995 4333333332 2
Q ss_pred cccHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCC----chhHHHHHHc--CCCcEEEEecCCCChhhHHHhhhcccCC
Q 003819 645 KSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSN----FNDIIHSIMD--MDADVITIENSRSDEKLLSVFREGVKYR 718 (793)
Q Consensus 645 ~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~C~g~----~~~i~~~l~~--l~~D~isiE~~r~~~~~L~~~~~~~~~~ 718 (793)
..+++.+....-.+++.+ +.+.+.++|.+|+-.|. +.-.++.+.. .+.|+|++=
T Consensus 146 ~~~~~~~a~ll~ag~~AV-r~~~p~~kV~lH~~~~~~~~~~~~~f~~l~~~g~d~DviGlS------------------- 205 (332)
T PF07745_consen 146 PSNWDNLAKLLNAGIKAV-REVDPNIKVMLHLANGGDNDLYRWFFDNLKAAGVDFDVIGLS------------------- 205 (332)
T ss_dssp TT-HHHHHHHHHHHHHHH-HTHSSTSEEEEEES-TTSHHHHHHHHHHHHHTTGG-SEEEEE-------------------
T ss_pred ccCHHHHHHHHHHHHHHH-HhcCCCCcEEEEECCCCchHHHHHHHHHHHhcCCCcceEEEe-------------------
Confidence 345655544433333333 22445688999988664 2344555543 444555553
Q ss_pred CeEeeeeecCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEcCCCCCC--------------------CCChhHHHHHHHHH
Q 003819 719 AGIGPGVYDIHSPRIPSTEEIADRINKMLAVLESNILWVNPDCGLK--------------------TRKYSEVKPALSNM 778 (793)
Q Consensus 719 ~~i~~GVvD~~s~~ves~eev~~~i~~al~~i~~~~l~vsPdCGL~--------------------t~~~~~~~~kL~~m 778 (793)
.|+--+ .+.+.+...+..+.+..+.+-+++-+++... +.+++-+..-|+.|
T Consensus 206 ------yYP~w~---~~l~~l~~~l~~l~~ry~K~V~V~Et~yp~t~~d~D~~~n~~~~~~~~~~yp~t~~GQ~~~l~~l 276 (332)
T PF07745_consen 206 ------YYPFWH---GTLEDLKNNLNDLASRYGKPVMVVETGYPWTLDDGDGTGNIIGATSLISGYPATPQGQADFLRDL 276 (332)
T ss_dssp ------E-STTS---T-HHHHHHHHHHHHHHHT-EEEEEEE---SBS--SSSS--SSSSSTGGTTS-SSHHHHHHHHHHH
T ss_pred ------cCCCCc---chHHHHHHHHHHHHHHhCCeeEEEeccccccccccccccccCccccccCCCCCCHHHHHHHHHHH
Confidence 333211 1666777777777766676666666666555 23566677778888
Q ss_pred HHHHHHH
Q 003819 779 VAAAKLL 785 (793)
Q Consensus 779 v~aa~~~ 785 (793)
.++.+.+
T Consensus 277 ~~~v~~~ 283 (332)
T PF07745_consen 277 INAVKNV 283 (332)
T ss_dssp HHHHHTS
T ss_pred HHHHHHh
Confidence 7776654
No 91
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=74.79 E-value=62 Score=33.24 Aligned_cols=89 Identities=17% Similarity=0.255 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHcCCcEEEEcCcc--cccCCCCCcccHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCchhHHHHHHcC
Q 003819 614 AIKDEVEDLEKAGITVIQIDEAA--LREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDM 691 (793)
Q Consensus 614 al~~ev~~L~~aGv~~IQIDEPa--l~~~l~l~~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~C~g~~~~i~~~l~~l 691 (793)
-+.+|.+.+.++|++||-+|=.. +..++. +-.-.++++|..+.. +.-.-+||--.+-++.++.+...
T Consensus 18 nL~~e~~~~l~~GadwlHlDVMDg~FVpNiT--------~G~pvV~slR~~~~~---~~ffD~HmMV~~Peq~V~~~a~a 86 (224)
T KOG3111|consen 18 NLAAECKKMLDAGADWLHLDVMDGHFVPNIT--------FGPPVVESLRKHTGA---DPFFDVHMMVENPEQWVDQMAKA 86 (224)
T ss_pred HHHHHHHHHHHcCCCeEEEeeecccccCCcc--------cchHHHHHHHhccCC---CcceeEEEeecCHHHHHHHHHhc
Confidence 46788999999999999999533 332222 122467777765332 22456788778888999999999
Q ss_pred CCcEEEEe--cCCCChhhHHHhhh
Q 003819 692 DADVITIE--NSRSDEKLLSVFRE 713 (793)
Q Consensus 692 ~~D~isiE--~~r~~~~~L~~~~~ 713 (793)
+++.++|- ......++.+.+++
T Consensus 87 gas~~tfH~E~~q~~~~lv~~ir~ 110 (224)
T KOG3111|consen 87 GASLFTFHYEATQKPAELVEKIRE 110 (224)
T ss_pred CcceEEEEEeeccCHHHHHHHHHH
Confidence 99987765 44444555666665
No 92
>PRK08999 hypothetical protein; Provisional
Probab=74.47 E-value=23 Score=38.66 Aligned_cols=109 Identities=20% Similarity=0.259 Sum_probs=63.7
Q ss_pred HHHHHHHHHHCCCCEEEeeccccccCCChHHHHHHHHHHHHHHhccCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEE
Q 003819 188 YKEVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFD 267 (793)
Q Consensus 188 Y~~~l~~L~~aG~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~lp~Vd~l~lD 267 (793)
+.+.++++.+.|+.+||+-++-+ +.++...+.+....+.+.. +++++|+.+ .+...+++ .||+||-
T Consensus 146 ~~~~~~~~l~~g~~~vqlR~k~~----~~~~~~~~~~~l~~~~~~~-~~~liind~--------~~la~~~~-~~GvHl~ 211 (312)
T PRK08999 146 FLARLERALAAGIRLIQLRAPQL----PPAAYRALARAALGLCRRA-GAQLLLNGD--------PELAEDLG-ADGVHLT 211 (312)
T ss_pred HHHHHHHHHHCCCcEEEEeCCCC----CHHHHHHHHHHHHHHHHHh-CCEEEEECc--------HHHHHhcC-CCEEEcC
Confidence 33455566689999999999853 3345555555555554432 367788743 34566788 9999998
Q ss_pred eccCCCChhhHhhhCCCCCEEEEEEeeCCCCCCCCHHHHHHHHHHHhhhcCCCcEEEeC
Q 003819 268 LIRGTKTLDLIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVST 326 (793)
Q Consensus 268 ~~~~~~~l~~l~~~~p~~k~l~lGvVdgrn~w~ed~~~i~~~i~~~~~~v~~e~l~vsp 326 (793)
-...+ ....+. ++.++.+++.+ .+.+++ .+|.+ .+.|-+.++|
T Consensus 212 ~~d~~--~~~~r~-~~~~~~ig~S~--------h~~~~~----~~a~~-~~~dyi~~gp 254 (312)
T PRK08999 212 SAQLA--ALAARP-LPAGRWVAASC--------HDAEEL----ARAQR-LGVDFAVLSP 254 (312)
T ss_pred hhhcC--hHhhcc-CCCCCEEEEec--------CCHHHH----HHHHh-cCCCEEEECC
Confidence 54321 111222 44455555443 344443 33322 4667788877
No 93
>PRK07695 transcriptional regulator TenI; Provisional
Probab=73.90 E-value=52 Score=33.59 Aligned_cols=105 Identities=14% Similarity=0.158 Sum_probs=57.0
Q ss_pred HHHHHHHHCCCCEEEeeccccccCCChHHHHHHHHHHHHHHhccCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEEec
Q 003819 190 EVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLI 269 (793)
Q Consensus 190 ~~l~~L~~aG~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~lp~Vd~l~lD~~ 269 (793)
+..+ +.++|+++||+-++-+.. ++...+.+...... ....+++++.+ .+....++ +||+|+-..
T Consensus 19 ~~~~-~~~~g~~~iqlR~k~~~~----~~~~~~~~~l~~~~--~~~~~liin~~--------~~la~~~~-~~gvHl~~~ 82 (201)
T PRK07695 19 AVAM-QIHSEVDYIHIREREKSA----KELYEGVESLLKKG--VPASKLIINDR--------VDIALLLN-IHRVQLGYR 82 (201)
T ss_pred HHHH-HHhCCCCEEEEcCCCCCH----HHHHHHHHHHHHhC--CCCCeEEEECH--------HHHHHHcC-CCEEEeCcc
Confidence 4444 678899999999987553 23333222222221 11235777743 34566778 999999753
Q ss_pred cCCCChhhHhhhCCCCCEEEEEEeeCCCCCCCCHHHHHHHHHHHhhhcCCCcEEEeC
Q 003819 270 RGTKTLDLIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVST 326 (793)
Q Consensus 270 ~~~~~l~~l~~~~p~~k~l~lGvVdgrn~w~ed~~~i~~~i~~~~~~v~~e~l~vsp 326 (793)
. .....+++.+| +..| |+ +. .+.+++ .++.+ .|.+-+.++|
T Consensus 83 ~--~~~~~~r~~~~-~~~i--g~-s~-----~s~e~a----~~a~~-~Gadyi~~g~ 123 (201)
T PRK07695 83 S--FSVRSVREKFP-YLHV--GY-SV-----HSLEEA----IQAEK-NGADYVVYGH 123 (201)
T ss_pred c--CCHHHHHHhCC-CCEE--EE-eC-----CCHHHH----HHHHH-cCCCEEEECC
Confidence 3 22344444454 4444 44 22 244443 33333 4666666544
No 94
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=73.80 E-value=18 Score=36.36 Aligned_cols=64 Identities=17% Similarity=0.175 Sum_probs=38.0
Q ss_pred HHHHHHHCCCCEEEeeccccccCCChHHHHHHHHHHHHHHhccCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEE
Q 003819 191 VVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFD 267 (793)
Q Consensus 191 ~l~~L~~aG~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~lp~Vd~l~lD 267 (793)
++++..++|++.||+|-+ +.++ ++++.+.+....+++.|.++ |++..++++.+.++. ||.|++=
T Consensus 92 e~~ea~~~g~d~I~lD~~------~~~~---~~~~v~~l~~~~~~v~ie~S---GGI~~~ni~~ya~~g-vD~isvg 155 (169)
T PF01729_consen 92 EAEEALEAGADIIMLDNM------SPED---LKEAVEELRELNPRVKIEAS---GGITLENIAEYAKTG-VDVISVG 155 (169)
T ss_dssp HHHHHHHTT-SEEEEES-------CHHH---HHHHHHHHHHHTTTSEEEEE---SSSSTTTHHHHHHTT--SEEEEC
T ss_pred HHHHHHHhCCCEEEecCc------CHHH---HHHHHHHHhhcCCcEEEEEE---CCCCHHHHHHHHhcC-CCEEEcC
Confidence 344455689999999965 3333 44444433222224556555 655456788999999 9998874
No 95
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=73.70 E-value=1.3e+02 Score=32.09 Aligned_cols=155 Identities=14% Similarity=0.184 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHcCCcEEEEcCcccccCCCCCcccHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCchhHHHHHHcCCC
Q 003819 614 AIKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDA 693 (793)
Q Consensus 614 al~~ev~~L~~aGv~~IQIDEPal~~~l~l~~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~C~g~~~~i~~~l~~l~~ 693 (793)
.+.+.+..+.++|+++|=|--...+.+- ...+.++..+...++++.+.+... ..|.+-++. .++++.-++..+
T Consensus 25 ~~~~~a~~~~~~GAdiIDvG~~st~p~~--~~~~~~~E~~rl~~~v~~l~~~~~--~piSIDT~~---~~v~~aaL~~g~ 97 (258)
T cd00423 25 KALEHARRMVEEGADIIDIGGESTRPGA--EPVSVEEELERVIPVLRALAGEPD--VPISVDTFN---AEVAEAALKAGA 97 (258)
T ss_pred HHHHHHHHHHHCCCCEEEECCCcCCCCC--CcCCHHHHHHHHHHHHHHHHhcCC--CeEEEeCCc---HHHHHHHHHhCC
Confidence 4455677788999999988854443321 111233333334444444433222 335555443 256776666677
Q ss_pred cEEEE-ecCCCChhhHHHhhhcccCCCeEeeeeecCCCC------C-CCCH----HHHHHHHHHHHhh-cCCCcEEEcCC
Q 003819 694 DVITI-ENSRSDEKLLSVFREGVKYRAGIGPGVYDIHSP------R-IPST----EEIADRINKMLAV-LESNILWVNPD 760 (793)
Q Consensus 694 D~isi-E~~r~~~~~L~~~~~~~~~~~~i~~GVvD~~s~------~-ves~----eev~~~i~~al~~-i~~~~l~vsPd 760 (793)
+.|.= -....+.+.++..++ ++-.+++--.+.... . -... +.+.++++++.+. ++.+++|+-|.
T Consensus 98 ~iINdis~~~~~~~~~~l~~~---~~~~vV~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Gi~~~~IilDPg 174 (258)
T cd00423 98 DIINDVSGGRGDPEMAPLAAE---YGAPVVLMHMDGTPQTMQNNPYYADVVDEVVEFLEERVEAATEAGIPPEDIILDPG 174 (258)
T ss_pred CEEEeCCCCCCChHHHHHHHH---cCCCEEEECcCCCCcccccCCCcchHHHHHHHHHHHHHHHHHHcCCCHHHEEEeCC
Confidence 75542 111212345555555 232333333332211 1 1223 3444555555542 23789999998
Q ss_pred CCCCCCChhHHHHHHHHHH
Q 003819 761 CGLKTRKYSEVKPALSNMV 779 (793)
Q Consensus 761 CGL~t~~~~~~~~kL~~mv 779 (793)
-|+.. +.+.....|+++.
T Consensus 175 ~g~~k-~~~~~~~~l~~i~ 192 (258)
T cd00423 175 IGFGK-TEEHNLELLRRLD 192 (258)
T ss_pred CCccC-CHHHHHHHHHHHH
Confidence 88765 4433334444433
No 96
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=73.39 E-value=83 Score=41.07 Aligned_cols=152 Identities=13% Similarity=0.114 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHHHHHHHcCCcEEEEcC-cccccCCCCCcccHHHHHHHHHHHHHHHhcCCCCCCeEEEE-eCCC-----
Q 003819 607 TCYQIALAIKDEVEDLEKAGITVIQIDE-AALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTH-MCYS----- 679 (793)
Q Consensus 607 ~~~~lA~al~~ev~~L~~aGv~~IQIDE-Pal~~~l~l~~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH-~C~g----- 679 (793)
..+++...+++.++.|.++||++|-+.= |.+. -...++.+.+.+.+....+..+.+. +|..
T Consensus 142 t~del~~~y~eq~~~L~~~GvD~iliETi~d~~------------EakAal~a~~~~~~~~~~~lPv~vS~~~~d~~Gr~ 209 (1178)
T TIGR02082 142 TYDELVDAYTEQAKGLLDGGVDLLLIETCFDTL------------NAKAALFAAETVFEEKGRELPIMISGTIVDTSGRT 209 (1178)
T ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEEeccCCHH------------HHHHHHHHHHHHHhhcCCCCeEEEEEEEECCCCee
Confidence 3467888999999999999999876652 1111 1334556666554322223456666 5542
Q ss_pred ----CchhHHHHHHcCCCcEEEEecCCCChhhH---HHhhhcccCCCeEeeeee------cCCCCCCCCHHHHHHHHHHH
Q 003819 680 ----NFNDIIHSIMDMDADVITIENSRSDEKLL---SVFREGVKYRAGIGPGVY------DIHSPRIPSTEEIADRINKM 746 (793)
Q Consensus 680 ----~~~~i~~~l~~l~~D~isiE~~r~~~~~L---~~~~~~~~~~~~i~~GVv------D~~s~~ves~eev~~~i~~a 746 (793)
+....+..+..++++++++-.+.+..... +.+.. . .+ .-++|+ +....+-.+|++..+.+.+.
T Consensus 210 ~~G~~~~~~~~~l~~~~~~avGlNCs~gP~~m~~~l~~l~~-~-~~--~pi~vyPNAGlP~~~~~yd~~p~~~a~~~~~~ 285 (1178)
T TIGR02082 210 LSGQTIEAFLTSLEHAGIDMIGLNCALGPDEMRPHLKHLSE-H-AE--AYVSCHPNAGLPNAFGEYDLTPDELAKALADF 285 (1178)
T ss_pred CCCCcHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHHHHHH-h-cC--ceEEEEeCCCCCCCCCcccCCHHHHHHHHHHH
Confidence 24577778888999999998775433333 33333 1 11 223332 22224446899999999998
Q ss_pred HhhcCCCcEEEcCCCCCCCCChhHHHHHHHHHHH
Q 003819 747 LAVLESNILWVNPDCGLKTRKYSEVKPALSNMVA 780 (793)
Q Consensus 747 l~~i~~~~l~vsPdCGL~t~~~~~~~~kL~~mv~ 780 (793)
.+.-+.. +|.=.||-. ++-.++|+.++.
T Consensus 286 ~~~ggv~--IIGGCCGTt----PeHI~ala~~l~ 313 (1178)
T TIGR02082 286 AAEGGLN--IVGGCCGTT----PDHIRAIAEAVK 313 (1178)
T ss_pred HHhCCCc--EEEecCCCC----HHHHHHHHHHhh
Confidence 7742333 788899963 344455555443
No 97
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=73.09 E-value=30 Score=35.26 Aligned_cols=68 Identities=16% Similarity=0.232 Sum_probs=41.8
Q ss_pred HHHHHHHHHHcCCcEEEEcCcccccCCCCCcccHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCchhHHHHHHcCCCc
Q 003819 615 IKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDAD 694 (793)
Q Consensus 615 l~~ev~~L~~aGv~~IQIDEPal~~~l~l~~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~C~g~~~~i~~~l~~l~~D 694 (793)
+.+.++.+.++|+++||+|.+.+. ...+.+. +..+...+... ++.+.+| +-++...++++|
T Consensus 23 ~~~~~~~~~~~gv~~v~lr~~~~~---------~~~~~~~-~~~~~~~~~~~--~~~l~~~-------~~~~~a~~~gad 83 (212)
T PRK00043 23 LLEVVEAALEGGVTLVQLREKGLD---------TRERLEL-ARALKELCRRY--GVPLIVN-------DRVDLALAVGAD 83 (212)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCC---------HHHHHHH-HHHHHHHHHHh--CCeEEEe-------ChHHHHHHcCCC
Confidence 445677788899999999987632 1233332 22233333332 2445555 346778889999
Q ss_pred EEEEecC
Q 003819 695 VITIENS 701 (793)
Q Consensus 695 ~isiE~~ 701 (793)
++++...
T Consensus 84 ~vh~~~~ 90 (212)
T PRK00043 84 GVHLGQD 90 (212)
T ss_pred EEecCcc
Confidence 9998643
No 98
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=71.64 E-value=29 Score=38.99 Aligned_cols=110 Identities=15% Similarity=0.153 Sum_probs=62.4
Q ss_pred HHHHHHHHHHCCCCEEEeeccccccCCChHHHHHHHHHHHHHHhccCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEE
Q 003819 188 YKEVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFD 267 (793)
Q Consensus 188 Y~~~l~~L~~aG~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~lp~Vd~l~lD 267 (793)
+.+.++++.+.|+.+||+-++-+. +.+...+.+.+..+.+.. +..++|+.. .+....++ +||+||-
T Consensus 159 ll~~l~~al~~Gv~~VQLR~K~~~----~~~~~~~a~~L~~l~~~~-~~~lIIND~--------vdlAl~~~-aDGVHLg 224 (347)
T PRK02615 159 LLEVVEAALKGGVTLVQYRDKTAD----DRQRLEEAKKLKELCHRY-GALFIVNDR--------VDIALAVD-ADGVHLG 224 (347)
T ss_pred HHHHHHHHHHcCCCEEEECCCCCC----HHHHHHHHHHHHHHHHHh-CCeEEEeCh--------HHHHHHcC-CCEEEeC
Confidence 445677788999999999987643 334444444444444322 356777632 34556778 9999996
Q ss_pred eccCCCChhhHhhhCCCCCEEEEEEeeCCCCCCCCHHHHHHHHHHHhhhcCCCcEEEeC
Q 003819 268 LIRGTKTLDLIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVST 326 (793)
Q Consensus 268 ~~~~~~~l~~l~~~~p~~k~l~lGvVdgrn~w~ed~~~i~~~i~~~~~~v~~e~l~vsp 326 (793)
..+-+ ....+..++.++.|++.+ .+++++.+..+ .|.|=|.++|
T Consensus 225 q~dl~--~~~aR~llg~~~iIG~S~--------Hs~~e~~~A~~-----~GaDYI~lGP 268 (347)
T PRK02615 225 QEDLP--LAVARQLLGPEKIIGRST--------TNPEEMAKAIA-----EGADYIGVGP 268 (347)
T ss_pred hhhcC--HHHHHHhcCCCCEEEEec--------CCHHHHHHHHH-----cCCCEEEECC
Confidence 53311 222232244566555444 24565533332 3556677765
No 99
>PRK10812 putative DNAse; Provisional
Probab=70.14 E-value=1.4e+02 Score=32.20 Aligned_cols=128 Identities=20% Similarity=0.169 Sum_probs=67.5
Q ss_pred CCcEEEEeccCCCchhhHHHHhcCCCc---cEEEEEeccCCCChhhHhhhCCCCCEEEEEEeeCCCCCCCCHHHHHHHHH
Q 003819 235 GLNVLIETYFADVPAETYKILTSLKGV---TGFGFDLIRGTKTLDLIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQ 311 (793)
Q Consensus 235 ~~~i~l~tyfg~~~~~~~~~l~~lp~V---d~l~lD~~~~~~~l~~l~~~~p~~k~l~lGvVdgrn~w~ed~~~i~~~i~ 311 (793)
+..+.+|+- +.. ++.++.|.+.. + .++.-=| .++.+.+.+.+..+-.+++|-+-+ +. -.+.++
T Consensus 124 ~~Pv~iH~r-~a~-~~~l~iL~~~~-~~~~~~v~H~f---sG~~~~a~~~~~~G~~is~~g~~t---~~-----~~~~~~ 189 (265)
T PRK10812 124 NKPVIVHTR-DAR-ADTLAILREEK-VTDCGGVLHCF---TEDRETAGKLLDLGFYISFSGIVT---FR-----NAEQLR 189 (265)
T ss_pred CCCeEEEee-Cch-HHHHHHHHhhc-CCCCCEEEEee---cCCHHHHHHHHHCCCEEEECeeee---cC-----ccHHHH
Confidence 357888865 444 67788777643 3 2332112 234444443222344566652211 11 123466
Q ss_pred HHhhhcCCCcEEEeCCCCCcccccccccccCCcHHHHhHHHHHHHHHHHHHHHHHHccCCccHHHHHHHHHHHH
Q 003819 312 DLAGTVGKDKVVVSTSCSLLHTAVDLENETKLDQEIKSWLAFAAQKVVEVNALAKALSGQKDEAYFSSNAAAQA 385 (793)
Q Consensus 312 ~~~~~v~~e~l~vspsCgL~hvP~~~~~E~~l~~~~~~~lafA~qKl~El~~l~~~l~~~~~~~~~~~~~~~~~ 385 (793)
++.+.+|.|+|.+.|||+.+. |........-|. .+....++++++. .+..+.....+..|...+-
T Consensus 190 ~~~~~ipldrlLlETD~P~~~-p~~~~g~~n~P~----~i~~v~~~ia~l~----g~~~eei~~~~~~N~~~lf 254 (265)
T PRK10812 190 DAARYVPLDRLLVETDSPYLA-PVPHRGKENQPA----MVRDVAEYMAVLK----GVSVEELAQVTTDNFARLF 254 (265)
T ss_pred HHHHhCChhhEEEecCCCCCC-CcCCCCCCCCcH----HHHHHHHHHHHHh----CCCHHHHHHHHHHHHHHHH
Confidence 777788999999999999862 332222222222 3445667777763 2222233445566665554
No 100
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=69.90 E-value=43 Score=33.79 Aligned_cols=109 Identities=10% Similarity=0.085 Sum_probs=59.2
Q ss_pred HHHHHHHHHHCCCCEEEeeccccccCCChHHHH-HHHHHHHHHHhccCCCcEEEEeccCCCchhhHHHHhcCCCccEEEE
Q 003819 188 YKEVVAELKAAGATWIQFDEPTLVLDLDSHKLQ-AFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGF 266 (793)
Q Consensus 188 Y~~~l~~L~~aG~~~VQiDEP~L~~d~~~~~~~-~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~lp~Vd~l~l 266 (793)
+.+.++.+.+.|+.+||+-++-+ +..+.. .+.+......+ . +.+++++.+ .+...+++ .||+||
T Consensus 15 ~~~~~~~~~~~g~~~v~lR~~~~----~~~~~~~~~~~l~~~~~~-~-~~~l~i~~~--------~~la~~~g-~~GvHl 79 (196)
T TIGR00693 15 LLNRVEAALKGGVTLVQLRDKGS----NTRERLALAEKLQELCRR-Y-GVPFIVNDR--------VDLALALG-ADGVHL 79 (196)
T ss_pred HHHHHHHHHhcCCCEEEEecCCC----CHHHHHHHHHHHHHHHHH-h-CCeEEEECH--------HHHHHHcC-CCEEec
Confidence 44566778889999999998753 333333 33333332222 1 356777632 34566788 999999
Q ss_pred EeccCCCChhhHhhhCCCCCEEEEEEeeCCCCCCCCHHHHHHHHHHHhhhcCCCcEEEeC
Q 003819 267 DLIRGTKTLDLIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVST 326 (793)
Q Consensus 267 D~~~~~~~l~~l~~~~p~~k~l~lGvVdgrn~w~ed~~~i~~~i~~~~~~v~~e~l~vsp 326 (793)
-...- ....++..++.++.+++.+ + +.+++. ++.+ .|.+-+.++|
T Consensus 80 ~~~~~--~~~~~r~~~~~~~~ig~s~---h-----~~~e~~----~a~~-~g~dyi~~~~ 124 (196)
T TIGR00693 80 GQDDL--PASEARALLGPDKIIGVST---H-----NLEELA----EAEA-EGADYIGFGP 124 (196)
T ss_pred CcccC--CHHHHHHhcCCCCEEEEeC---C-----CHHHHH----HHhH-cCCCEEEECC
Confidence 63321 2233333344555555443 2 334442 3332 4666677654
No 101
>PLN02334 ribulose-phosphate 3-epimerase
Probab=69.70 E-value=68 Score=33.54 Aligned_cols=73 Identities=11% Similarity=0.101 Sum_probs=40.7
Q ss_pred HHHHHHHHHHCCCCEEEeeccccccCCChHHH-HHHHHHHHHHHhccCCCcEEEEeccCCCchhhHHHHhcCCCccEE--
Q 003819 188 YKEVVAELKAAGATWIQFDEPTLVLDLDSHKL-QAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGF-- 264 (793)
Q Consensus 188 Y~~~l~~L~~aG~~~VQiDEP~L~~d~~~~~~-~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~lp~Vd~l-- 264 (793)
+.+.++++.+.|++|||+|+--..... .... ..+.+....+.+ ..+-++..-.+. .+.++.+.... +|++
T Consensus 22 l~~~l~~~~~~g~~~ihld~~d~~f~~-~~~~g~~~~~~l~~~~~----~~~~vhlmv~~p-~d~~~~~~~~g-ad~v~v 94 (229)
T PLN02334 22 LAEEAKRVLDAGADWLHVDVMDGHFVP-NLTIGPPVVKALRKHTD----APLDCHLMVTNP-EDYVPDFAKAG-ASIFTF 94 (229)
T ss_pred HHHHHHHHHHcCCCEEEEecccCCcCC-ccccCHHHHHHHHhcCC----CcEEEEeccCCH-HHHHHHHHHcC-CCEEEE
Confidence 567888999999999999975442211 1000 012222222211 112222222233 45567778888 9999
Q ss_pred EEE
Q 003819 265 GFD 267 (793)
Q Consensus 265 ~lD 267 (793)
|++
T Consensus 95 H~~ 97 (229)
T PLN02334 95 HIE 97 (229)
T ss_pred eec
Confidence 888
No 102
>PRK06256 biotin synthase; Validated
Probab=68.35 E-value=1.8e+02 Score=32.08 Aligned_cols=135 Identities=13% Similarity=0.098 Sum_probs=75.8
Q ss_pred HHHHHHHCCCCEEEeeccccccCCChHHHHHHHHHHHHHHhccCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEEecc
Q 003819 191 VVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLIR 270 (793)
Q Consensus 191 ~l~~L~~aG~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~lp~Vd~l~lD~~~ 270 (793)
+++.+.+.|+..+.|--- .......+.+.+.++++.+.+. +++.+.+..|.+..+.+..|.+.. ++.+++.+..
T Consensus 99 ~~~~~~~~g~~~~~l~~~--g~~p~~~~~~~~~e~i~~i~~~---~~i~~~~~~g~l~~e~l~~LkeaG-~~~v~~~lEt 172 (336)
T PRK06256 99 AAKEAIEEGAGTFCIVAS--GRGPSGKEVDQVVEAVKAIKEE---TDLEICACLGLLTEEQAERLKEAG-VDRYNHNLET 172 (336)
T ss_pred HHHHHHHCCCCEEEEEec--CCCCCchHHHHHHHHHHHHHhc---CCCcEEecCCcCCHHHHHHHHHhC-CCEEecCCcc
Confidence 344566779875554311 1112223456667777777653 234344455555457788888998 9999875442
Q ss_pred C---------CCChhhHhh---hC-CCCCEEEEEEeeCCCCCCCCHHHHHHHHHHHhhhcCCCcEEEeCCCCCccccc
Q 003819 271 G---------TKTLDLIKT---EF-PLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVSTSCSLLHTAV 335 (793)
Q Consensus 271 ~---------~~~l~~l~~---~~-p~~k~l~lGvVdgrn~w~ed~~~i~~~i~~~~~~v~~e~l~vspsCgL~hvP~ 335 (793)
+ ..+++...+ .+ ..+-.+..|+|=|- -|+.+++.+.+..+. .++++.+.+++-.+.-.+|.
T Consensus 173 s~~~~~~i~~~~t~~~~i~~i~~a~~~Gi~v~~~~I~Gl---gEt~ed~~~~~~~l~-~l~~~~v~i~~l~P~pGT~l 246 (336)
T PRK06256 173 SRSYFPNVVTTHTYEDRIDTCEMVKAAGIEPCSGGIIGM---GESLEDRVEHAFFLK-ELDADSIPINFLNPIPGTPL 246 (336)
T ss_pred CHHHHhhcCCCCCHHHHHHHHHHHHHcCCeeccCeEEeC---CCCHHHHHHHHHHHH-hCCCCEEeecccccCCCCCC
Confidence 1 122222111 01 12345677777765 377888877777665 46677787776444444443
No 103
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=68.31 E-value=96 Score=34.68 Aligned_cols=135 Identities=13% Similarity=0.044 Sum_probs=77.3
Q ss_pred HHHHHHHHCCCCEEEee------ccccccCCCh-HHHHHHHHHHHHHHhccCCCcEE--EEeccCCCchhhHHHHhcCCC
Q 003819 190 EVVAELKAAGATWIQFD------EPTLVLDLDS-HKLQAFSDAYSELQSSLSGLNVL--IETYFADVPAETYKILTSLKG 260 (793)
Q Consensus 190 ~~l~~L~~aG~~~VQiD------EP~L~~d~~~-~~~~~~~~~y~~l~~~~~~~~i~--l~tyfg~~~~~~~~~l~~lp~ 260 (793)
++++.|.++|+++|++= -..+....+. .+.+.++.+-..+ ++.++. +.-.+++. .+ ++...+..
T Consensus 29 ~i~~~L~~aGv~~IEvg~~~g~g~~s~~~g~~~~~~~e~i~~~~~~~----~~~~~~~ll~pg~~~~-~d-l~~a~~~g- 101 (337)
T PRK08195 29 AIARALDAAGVPVIEVTHGDGLGGSSFNYGFGAHTDEEYIEAAAEVV----KQAKIAALLLPGIGTV-DD-LKMAYDAG- 101 (337)
T ss_pred HHHHHHHHcCCCEEEeecCCCCCCccccCCCCCCCHHHHHHHHHHhC----CCCEEEEEeccCcccH-HH-HHHHHHcC-
Confidence 45667889999999992 1112111110 1233333332222 223432 22123444 43 45666778
Q ss_pred ccEEEEEeccCC-CChhhHhhh-CCCCCEEEEEEeeCCCCCCCCHHHHHHHHHHHhhhcCCCcEEEeCCCCCcccccc
Q 003819 261 VTGFGFDLIRGT-KTLDLIKTE-FPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVSTSCSLLHTAVD 336 (793)
Q Consensus 261 Vd~l~lD~~~~~-~~l~~l~~~-~p~~k~l~lGvVdgrn~w~ed~~~i~~~i~~~~~~v~~e~l~vspsCgL~hvP~~ 336 (793)
||.+.+=+.-.. .......+. -..+..+.+.+.++ .+.+++.+.+.++.+.+ .|++.+++.-+.|.+ +|.+
T Consensus 102 vd~iri~~~~~e~~~~~~~i~~ak~~G~~v~~~l~~a---~~~~~e~l~~~a~~~~~-~Ga~~i~i~DT~G~~-~P~~ 174 (337)
T PRK08195 102 VRVVRVATHCTEADVSEQHIGLARELGMDTVGFLMMS---HMAPPEKLAEQAKLMES-YGAQCVYVVDSAGAL-LPED 174 (337)
T ss_pred CCEEEEEEecchHHHHHHHHHHHHHCCCeEEEEEEec---cCCCHHHHHHHHHHHHh-CCCCEEEeCCCCCCC-CHHH
Confidence 998876543221 111111111 12466888889887 46789999999988866 588999999999986 3543
No 104
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=68.00 E-value=13 Score=37.92 Aligned_cols=68 Identities=19% Similarity=0.257 Sum_probs=41.8
Q ss_pred HHHHHHHHHHCCCCEEEeeccccccCCChHHHHHHHHHHHHHHhccCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEE
Q 003819 188 YKEVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFD 267 (793)
Q Consensus 188 Y~~~l~~L~~aG~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~lp~Vd~l~lD 267 (793)
+.+.++.+.++|+++||+|.+-+. ..+.....+.+..+.... +.+++++.+ ++.+.++. +|++|+.
T Consensus 23 ~~~~~~~~~~~gv~~v~lr~~~~~----~~~~~~~~~~~~~~~~~~-~~~l~~~~~--------~~~a~~~g-ad~vh~~ 88 (212)
T PRK00043 23 LLEVVEAALEGGVTLVQLREKGLD----TRERLELARALKELCRRY-GVPLIVNDR--------VDLALAVG-ADGVHLG 88 (212)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCC----HHHHHHHHHHHHHHHHHh-CCeEEEeCh--------HHHHHHcC-CCEEecC
Confidence 556778888999999999987533 222222222233332222 356766522 45667788 9999996
Q ss_pred ec
Q 003819 268 LI 269 (793)
Q Consensus 268 ~~ 269 (793)
..
T Consensus 89 ~~ 90 (212)
T PRK00043 89 QD 90 (212)
T ss_pred cc
Confidence 53
No 105
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=66.07 E-value=2.2e+02 Score=31.73 Aligned_cols=149 Identities=12% Similarity=0.223 Sum_probs=86.8
Q ss_pred HHHHHHHHHHcCCcEEEEc------CcccccCCCCCcccHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCC--CCchhHHH
Q 003819 615 IKDEVEDLEKAGITVIQID------EAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCY--SNFNDIIH 686 (793)
Q Consensus 615 l~~ev~~L~~aGv~~IQID------EPal~~~l~l~~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~C~--g~~~~i~~ 686 (793)
..+.+..|.++|+++|.+= .-.+..+.+.. .++ +++ +.+.+.++ .+++.+.+-. ++..+ ++
T Consensus 26 ~~~ia~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~~~-~~~-e~i-------~~~~~~~~-~~~~~~ll~pg~~~~~d-l~ 94 (333)
T TIGR03217 26 VRAIAAALDEAGVDAIEVTHGDGLGGSSFNYGFSAH-TDL-EYI-------EAAADVVK-RAKVAVLLLPGIGTVHD-LK 94 (333)
T ss_pred HHHHHHHHHHcCCCEEEEecCCCCCCccccCCCCCC-ChH-HHH-------HHHHHhCC-CCEEEEEeccCccCHHH-HH
Confidence 3445677889999999994 12232222111 122 222 22222333 2455554433 34444 56
Q ss_pred HHHcCCCcEEEEecCCCChhhH-HHhhhcccCCCeEeeeeecCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEcCCCCCCC
Q 003819 687 SIMDMDADVITIENSRSDEKLL-SVFREGVKYRAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLESNILWVNPDCGLKT 765 (793)
Q Consensus 687 ~l~~l~~D~isiE~~r~~~~~L-~~~~~~~~~~~~i~~GVvD~~s~~ves~eev~~~i~~al~~i~~~~l~vsPdCGL~t 765 (793)
...+.++|.+-+=+.-++.+.. +.++.....+..+...+.+++ .-++|++.+.++.+.+ .|++.+.+.-..|..
T Consensus 95 ~a~~~gvd~iri~~~~~e~d~~~~~i~~ak~~G~~v~~~l~~s~---~~~~e~l~~~a~~~~~-~Ga~~i~i~DT~G~~- 169 (333)
T TIGR03217 95 AAYDAGARTVRVATHCTEADVSEQHIGMARELGMDTVGFLMMSH---MTPPEKLAEQAKLMES-YGADCVYIVDSAGAM- 169 (333)
T ss_pred HHHHCCCCEEEEEeccchHHHHHHHHHHHHHcCCeEEEEEEccc---CCCHHHHHHHHHHHHh-cCCCEEEEccCCCCC-
Confidence 7778899999887544433222 222211123456777777765 3588999999988866 588999999888875
Q ss_pred CChhHHHHHHHHHHH
Q 003819 766 RKYSEVKPALSNMVA 780 (793)
Q Consensus 766 ~~~~~~~~kL~~mv~ 780 (793)
+|+++.+-++.+.+
T Consensus 170 -~P~~v~~~v~~l~~ 183 (333)
T TIGR03217 170 -LPDDVRDRVRALKA 183 (333)
T ss_pred -CHHHHHHHHHHHHH
Confidence 66666555555443
No 106
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=66.01 E-value=89 Score=32.72 Aligned_cols=111 Identities=12% Similarity=0.107 Sum_probs=62.5
Q ss_pred HHHHHHHHHHCC-CCEEEeeccccccCCChHHHHHHHHHHHHHHhccCCCcEEEEeccCCCchhhHHHHhcCCCccEEEE
Q 003819 188 YKEVVAELKAAG-ATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGF 266 (793)
Q Consensus 188 Y~~~l~~L~~aG-~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~lp~Vd~l~l 266 (793)
+.+.++++.+.| +++||+=|+.+. ..+...+.+....+.+.. ++.++|..+ ++....++ .||+||
T Consensus 28 ~~~~l~~al~~G~v~~vQlR~K~l~----~~~~~~~a~~l~~l~~~~-gv~liINd~--------~dlA~~~~-adGVHL 93 (221)
T PRK06512 28 LAKLLRAALQGGDVASVILPQYGLD----EATFQKQAEKLVPVIQEA-GAAALIAGD--------SRIAGRVK-ADGLHI 93 (221)
T ss_pred HHHHHHHHHcCCCccEEEEeCCCCC----HHHHHHHHHHHHHHHHHh-CCEEEEeCH--------HHHHHHhC-CCEEEE
Confidence 334666777889 799999987653 334444444444443322 356777632 44556788 999999
Q ss_pred EeccCCCChhhHhhhCCCCCEEEEEEeeCCCCCCCCHHHHHHHHHHHhhhcCCCcEEEeC
Q 003819 267 DLIRGTKTLDLIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVST 326 (793)
Q Consensus 267 D~~~~~~~l~~l~~~~p~~k~l~lGvVdgrn~w~ed~~~i~~~i~~~~~~v~~e~l~vsp 326 (793)
--.. ..+..+++.+..++.|++.+.+ +.++..+ +. ..|.|=+.++|
T Consensus 94 g~~d--~~~~~~r~~~~~~~iiG~s~~~-------s~~~a~~----A~-~~gaDYv~~Gp 139 (221)
T PRK06512 94 EGNL--AALAEAIEKHAPKMIVGFGNLR-------DRHGAME----IG-ELRPDYLFFGK 139 (221)
T ss_pred Cccc--cCHHHHHHhcCCCCEEEecCCC-------CHHHHHH----hh-hcCCCEEEECC
Confidence 6322 1355555445455544333222 2333322 32 35677788887
No 107
>cd00530 PTE Phosphotriesterase (PTE) catalyzes the hydrolysis of organophosphate nerve agents, including the chemical warfare agents VX, soman, and sarin as well as the insecticide paraoxon. PTE exists as a homodimer with one active site per monomer. The active site is located next to a binuclear metal center, at the C-terminal end of a TIM alpha- beta barrel motif. The native enzyme contains two zinc ions at the active site however these can be replaced with other metals such as cobalt, cadmium, nickel or manganese and the enzyme remains active.
Probab=65.51 E-value=1.6e+02 Score=31.46 Aligned_cols=147 Identities=13% Similarity=0.043 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHHH-HCCCCEEEeeccccccCCChHHHHHHHHHHHHHHhccCCCcEEEEeccC--CCchhhHHHHhcC
Q 003819 182 DKIIPVYKEVVAELK-AAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFA--DVPAETYKILTSL 258 (793)
Q Consensus 182 ~~L~~~Y~~~l~~L~-~aG~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg--~~~~~~~~~l~~l 258 (793)
+++.+.+.+.+.... .-+++..-|=|-.+.......+.+.|+...+ ++... +..+++|+.-+ .. .+.++.|.+.
T Consensus 97 ~~l~~~~~~~l~~~~~~~~i~~~~IGEigld~~~~~~q~~~f~~~~~-lA~~~-~~Pv~iH~~~~~~~~-~~~l~~l~~~ 173 (293)
T cd00530 97 EELTDMLIREIEEGIEGTGIKAGIIKEAGGSPAITPLEEKVLRAAAR-AQKET-GVPISTHTQAGLTMG-LEQLRILEEE 173 (293)
T ss_pred HHHHHHHHHHHHhccccCCcCceEEEEeecCCCCCHHHHHHHHHHHH-HHHHH-CCeEEEcCCCCcccc-HHHHHHHHHc
Confidence 455555555554322 2233322232222222233334445444433 22222 35688887643 34 6677777665
Q ss_pred CCccE--EEEEeccCCCChhhHhhhCCCCCEEEEEEeeCC-CCCCCCHHHHHHHHHHHhhhcCCCcEEEeCCCCCcc
Q 003819 259 KGVTG--FGFDLIRGTKTLDLIKTEFPLGKYLFAGVVDGR-NIWANDLASSLTTLQDLAGTVGKDKVVVSTSCSLLH 332 (793)
Q Consensus 259 p~Vd~--l~lD~~~~~~~l~~l~~~~p~~k~l~lGvVdgr-n~w~ed~~~i~~~i~~~~~~v~~e~l~vspsCgL~h 332 (793)
. +.. +.+.-....++.+.+..-+..+-.++++.+-.. .....+.+...+.++++.+..+.+++.++||++...
T Consensus 174 g-~~~~~~vi~H~~~~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~ill~TD~p~~~ 249 (293)
T cd00530 174 G-VDPSKVVIGHLDRNDDPDYLLKIAALGAYLEFDGIGKDKIFGYPSDETRADAVKALIDEGYGDRLLLSHDVFRKS 249 (293)
T ss_pred C-CChhheEEeCCCCCCCHHHHHHHHhCCCEEEeCCCCcccccCCCCHHHHHHHHHHHHHCCCcCCEEEeCCcCchh
Confidence 4 321 222211111244444432223444555432211 111233456677788888888889999999998863
No 108
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=64.99 E-value=45 Score=39.25 Aligned_cols=110 Identities=15% Similarity=0.151 Sum_probs=61.0
Q ss_pred HHHHHHHHHHCCCCEEEeeccccccCCChHHHHHHHHHHHHHHhccCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEE
Q 003819 188 YKEVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFD 267 (793)
Q Consensus 188 Y~~~l~~L~~aG~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~lp~Vd~l~lD 267 (793)
+.+.++++.+.|+.+|||-++.+. .++.....+.+..+.+.. +..++++.+ .+....++ .||+||-
T Consensus 309 ~~~~l~~~l~~Gv~~vqlR~k~~~----~~~~~~~a~~l~~~~~~~-~~~liind~--------~~lA~~~~-adGvHl~ 374 (502)
T PLN02898 309 TVDAVRAAIEGGATIVQLREKEAE----TREFIEEAKACLAICRSY-GVPLLINDR--------VDVALACD-ADGVHLG 374 (502)
T ss_pred HHHHHHHHHHcCCCEEEEccCCCC----HHHHHHHHHHHHHHHHHh-CCEEEEcCh--------HHHHHhcC-CCEEEeC
Confidence 345678888999999999987643 333322222233332221 356777744 33455678 9999996
Q ss_pred eccCCCChhhHhhhCCCCCEEEEEEeeCCCCCCCCHHHHHHHHHHHhhhcCCCcEEEeC
Q 003819 268 LIRGTKTLDLIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVST 326 (793)
Q Consensus 268 ~~~~~~~l~~l~~~~p~~k~l~lGvVdgrn~w~ed~~~i~~~i~~~~~~v~~e~l~vsp 326 (793)
-.+- .....+..++.++.|++.+ -+.+++ .++.+ .|.|-+.++|
T Consensus 375 ~~d~--~~~~~r~~~~~~~~iG~S~--------h~~~e~----~~a~~-~gadyi~~gp 418 (502)
T PLN02898 375 QSDM--PVRLARSLLGPGKIIGVSC--------KTPEQA----EQAWK-DGADYIGCGG 418 (502)
T ss_pred hHhc--CHHHHHHhcCCCCEEEEeC--------CCHHHH----HHHhh-cCCCEEEECC
Confidence 4321 1233333355566555443 344554 33322 4667777665
No 109
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=63.95 E-value=2e+02 Score=30.42 Aligned_cols=82 Identities=12% Similarity=0.060 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHcCCcEEEEcCcccccCCCCCcccHHHH----------HHHHHHHHHHHhcCCCCCCeEEEEeCCCC---
Q 003819 614 AIKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFY----------LKWAVHSFRITNCGVQDTTQVHTHMCYSN--- 680 (793)
Q Consensus 614 al~~ev~~L~~aGv~~IQIDEPal~~~l~l~~~~~~~~----------l~~av~a~~~~~~~v~~~~~I~lH~C~g~--- 680 (793)
...++++.|+++|+++|.||=|.--...+. ...+.. ++...+.++.+-+.. ...+|+-++|..
T Consensus 15 ~~~~~~~~l~~~Gad~iel~iPfsdPv~DG--~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~--~~pv~lm~y~n~~~~ 90 (242)
T cd04724 15 TTLEILKALVEAGADIIELGIPFSDPVADG--PVIQAASERALANGVTLKDVLELVKEIRKKN--TIPIVLMGYYNPILQ 90 (242)
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCCCCCCC--HHHHHHHHHHHHcCCCHHHHHHHHHHHhhcC--CCCEEEEEecCHHHH
Confidence 445678889999999999996552111111 001110 012222233322222 234665446553
Q ss_pred --chhHHHHHHcCCCcEEEEe
Q 003819 681 --FNDIIHSIMDMDADVITIE 699 (793)
Q Consensus 681 --~~~i~~~l~~l~~D~isiE 699 (793)
.+..++.+.+.++|++.+-
T Consensus 91 ~G~~~fi~~~~~aG~~giiip 111 (242)
T cd04724 91 YGLERFLRDAKEAGVDGLIIP 111 (242)
T ss_pred hCHHHHHHHHHHCCCcEEEEC
Confidence 4678889999999999983
No 110
>PF06187 DUF993: Protein of unknown function (DUF993); InterPro: IPR009334 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 4DNH_A.
Probab=63.93 E-value=20 Score=39.54 Aligned_cols=108 Identities=20% Similarity=0.417 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEEeeccccccCCChHHHHHHHHHHHHHHhccCCCcEEEE-----------eccCCC
Q 003819 179 SLIDKIIPVYKEVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIE-----------TYFADV 247 (793)
Q Consensus 179 ~ll~~L~~~Y~~~l~~L~~aG~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~-----------tyfg~~ 247 (793)
.-++++..+|.|.+....++|.+.|-+--=.|+.-. .-.+-+.++|.++..... -++++| .|||+-
T Consensus 125 ~sld~V~~AY~eQ~~~ve~~Gg~~ILMASRaLA~~A--~~p~DY~~VY~~lL~q~~-~PVILHWLG~mFDPaL~GYWGs~ 201 (382)
T PF06187_consen 125 ASLDDVIAAYEEQLEAVEAAGGRVILMASRALAAVA--RSPDDYLRVYDRLLSQAD-EPVILHWLGDMFDPALAGYWGSA 201 (382)
T ss_dssp --HHHHHHHHHHHHHHHHHTT--EEE---HHHHHH----SHHHHHHHHHHHHHH-S-S-EEEEEE-TTT-GGGTTTTS-S
T ss_pred CCHHHHHHHHHHHHHHHHHcCCeEEEeehHHHHHhh--CCHHHHHHHHHHHHHHcC-CCEEEEecccccCcccccccCCC
Confidence 357899999999999999999998876655554311 135678899999887643 256665 577754
Q ss_pred c-h----hhHHHHh--cCCCccEEEEEeccCCCChhhHhhhCCCCCEEEEE
Q 003819 248 P-A----ETYKILT--SLKGVTGFGFDLIRGTKTLDLIKTEFPLGKYLFAG 291 (793)
Q Consensus 248 ~-~----~~~~~l~--~lp~Vd~l~lD~~~~~~~l~~l~~~~p~~k~l~lG 291 (793)
. + -+++.+. .-. ||||-+-+-+...+.. ++..+|.+-.+.=|
T Consensus 202 d~~~A~~t~l~lI~~~~~k-VdGIKiSLLD~~~Ei~-lRrrLP~gVr~YTG 250 (382)
T PF06187_consen 202 DLDAAMDTVLELIAAHADK-VDGIKISLLDAEKEIA-LRRRLPEGVRMYTG 250 (382)
T ss_dssp SHHHHHHHHHHHHHHTGGG-EEEEEEES--HHHHHH-HHTS--TT-EEEE-
T ss_pred cHHHHHHHHHHHHHhChhh-cCeeEecccCcHHHHH-HHHhCCccceeecC
Confidence 2 2 2334444 336 9999888765322222 33357776555544
No 111
>COG3462 Predicted membrane protein [Function unknown]
Probab=63.87 E-value=7.6 Score=35.77 Aligned_cols=29 Identities=17% Similarity=0.359 Sum_probs=25.5
Q ss_pred CHHHHHHHHHhhCCCCCHHHHHHHHHHHH
Q 003819 14 KRELKFALESFWDGKSSADELQNVAADLR 42 (793)
Q Consensus 14 ~reLK~A~e~yw~g~is~~eL~~~~~~~~ 42 (793)
.|..--+.|+|.+|+||+||..+..++++
T Consensus 88 sRA~eIlkER~AkGEItEEEY~r~~~~ir 116 (117)
T COG3462 88 SRAEEILKERYAKGEITEEEYRRIIRTIR 116 (117)
T ss_pred cHHHHHHHHHHhcCCCCHHHHHHHHHHhc
Confidence 36777889999999999999999988875
No 112
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=62.35 E-value=57 Score=34.17 Aligned_cols=124 Identities=15% Similarity=0.228 Sum_probs=63.0
Q ss_pred HHHHHHHHCCCCEEEeeccccccCCChHHHHHHHHHHHHHHhccCCCcEEEEeccCCCc-hhhHHHHhcCCCccEEEEEe
Q 003819 190 EVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVP-AETYKILTSLKGVTGFGFDL 268 (793)
Q Consensus 190 ~~l~~L~~aG~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~-~~~~~~l~~lp~Vd~l~lD~ 268 (793)
+.++.+.+.|++|||+=+-.....-.......+++..+.. ..++.+. |++. .+-.+.+.++. +|++++.-
T Consensus 36 e~a~~~~~~G~~~l~i~dl~~~~~~~~~~~~~i~~i~~~~-----~~~l~v~---GGi~~~~~~~~~~~~G-a~~v~iGs 106 (241)
T PRK13585 36 EVAKRWVDAGAETLHLVDLDGAFEGERKNAEAIEKIIEAV-----GVPVQLG---GGIRSAEDAASLLDLG-VDRVILGT 106 (241)
T ss_pred HHHHHHHHcCCCEEEEEechhhhcCCcccHHHHHHHHHHc-----CCcEEEc---CCcCCHHHHHHHHHcC-CCEEEECh
Confidence 4555566889999998765443222122333444333322 2456665 4441 12256677888 99999875
Q ss_pred cc--CCCChhhHhhhCCCCCE-EEEEEeeCC---CCCCC----CHHHHHHHHHHHhhhcCCCcEEEeC
Q 003819 269 IR--GTKTLDLIKTEFPLGKY-LFAGVVDGR---NIWAN----DLASSLTTLQDLAGTVGKDKVVVST 326 (793)
Q Consensus 269 ~~--~~~~l~~l~~~~p~~k~-l~lGvVdgr---n~w~e----d~~~i~~~i~~~~~~v~~e~l~vsp 326 (793)
.. ++..+..+.+.++.++. +++-+.+++ ..|.+ ++.+..+.+ ...|.+.+.+.+
T Consensus 107 ~~~~~~~~~~~i~~~~g~~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~----~~~G~~~i~~~~ 170 (241)
T PRK13585 107 AAVENPEIVRELSEEFGSERVMVSLDAKDGEVVIKGWTEKTGYTPVEAAKRF----EELGAGSILFTN 170 (241)
T ss_pred HHhhChHHHHHHHHHhCCCcEEEEEEeeCCEEEECCCcccCCCCHHHHHHHH----HHcCCCEEEEEe
Confidence 43 22334444444665553 233322111 23433 444443333 235667776543
No 113
>PRK01060 endonuclease IV; Provisional
Probab=59.22 E-value=63 Score=34.46 Aligned_cols=29 Identities=10% Similarity=0.244 Sum_probs=24.4
Q ss_pred eEEEEe-CCCCchhHHHHHHcCCCcEEEEe
Q 003819 671 QVHTHM-CYSNFNDIIHSIMDMDADVITIE 699 (793)
Q Consensus 671 ~I~lH~-C~g~~~~i~~~l~~l~~D~isiE 699 (793)
++++|+ |++++.+.++.+.++++|++=+-
T Consensus 3 ~~g~~~~~~~~~~~~l~~~~~~G~d~vEl~ 32 (281)
T PRK01060 3 LIGAHVSAAGGLEGAVAEAAEIGANAFMIF 32 (281)
T ss_pred eEEEeeecCCCHHHHHHHHHHcCCCEEEEE
Confidence 567774 67889999999999999999764
No 114
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=58.61 E-value=2.2e+02 Score=30.47 Aligned_cols=80 Identities=9% Similarity=0.168 Sum_probs=42.2
Q ss_pred HHHHHHHcCCcEEEEcCccc---ccCCCCCcccHHHH-----HHHHHHHHHHHhcCCCCCCeEEEEeCCCCc------hh
Q 003819 618 EVEDLEKAGITVIQIDEAAL---REGLPLRKSEQDFY-----LKWAVHSFRITNCGVQDTTQVHTHMCYSNF------ND 683 (793)
Q Consensus 618 ev~~L~~aGv~~IQIDEPal---~~~l~l~~~~~~~~-----l~~av~a~~~~~~~v~~~~~I~lH~C~g~~------~~ 683 (793)
.++.|.++|+++|.|-=|.- ..+--......... ++...+..+.+.+.- .+..+. ||-|-|- ++
T Consensus 29 ~~~~l~~~Gad~iElGiPfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~-~~~plv-~m~Y~Npi~~~G~e~ 106 (256)
T TIGR00262 29 IIKTLIEAGADALELGVPFSDPLADGPTIQAADLRALRAGMTPEKCFELLKKVRQKH-PNIPIG-LLTYYNLIFRKGVEE 106 (256)
T ss_pred HHHHHHHcCCCEEEECCCCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcC-CCCCEE-EEEeccHHhhhhHHH
Confidence 45678889999999876651 11100000000000 011122222222110 124455 8888774 67
Q ss_pred HHHHHHcCCCcEEEEe
Q 003819 684 IIHSIMDMDADVITIE 699 (793)
Q Consensus 684 i~~~l~~l~~D~isiE 699 (793)
.++.+.+.++|++.+-
T Consensus 107 f~~~~~~aGvdgviip 122 (256)
T TIGR00262 107 FYAKCKEVGVDGVLVA 122 (256)
T ss_pred HHHHHHHcCCCEEEEC
Confidence 7888999999998876
No 115
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=58.37 E-value=2e+02 Score=28.98 Aligned_cols=75 Identities=23% Similarity=0.345 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHcCCcEEEEcCcccccCCCCCcccHHHHHHHHHHHHHHHhcCCCCCCeEEEE-eCCCCchhHHHHHHcC
Q 003819 613 LAIKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTH-MCYSNFNDIIHSIMDM 691 (793)
Q Consensus 613 ~al~~ev~~L~~aGv~~IQIDEPal~~~l~l~~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH-~C~g~~~~i~~~l~~l 691 (793)
..+.++++.+.++|++.|.+| +..+.-..... ..-..+..++. ..+ ..+.+| |++ +..+.++.+.+.
T Consensus 11 ~~~~~~~~~~~~~g~d~i~~~---~~Dg~~~~~~~---~~~~~v~~i~~---~~~--~~v~v~lm~~-~~~~~~~~~~~~ 78 (210)
T TIGR01163 11 ARLGEEVKAVEEAGADWIHVD---VMDGHFVPNLT---FGPPVLEALRK---YTD--LPIDVHLMVE-NPDRYIEDFAEA 78 (210)
T ss_pred HHHHHHHHHHHHcCCCEEEEc---CCCCCCCCCcc---cCHHHHHHHHh---cCC--CcEEEEeeeC-CHHHHHHHHHHc
Confidence 356788899999999999998 22211111100 11122333332 222 234454 444 455778888899
Q ss_pred CCcEEEEe
Q 003819 692 DADVITIE 699 (793)
Q Consensus 692 ~~D~isiE 699 (793)
++|++.+-
T Consensus 79 gadgv~vh 86 (210)
T TIGR01163 79 GADIITVH 86 (210)
T ss_pred CCCEEEEc
Confidence 99997765
No 116
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=58.16 E-value=3.3e+02 Score=32.24 Aligned_cols=126 Identities=12% Similarity=0.089 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHcCCcEEEEcCcccccCCCCCcccHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCchhHHHHHHcCC
Q 003819 613 LAIKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMD 692 (793)
Q Consensus 613 ~al~~ev~~L~~aGv~~IQIDEPal~~~l~l~~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~C~g~~~~i~~~l~~l~ 692 (793)
+.+.+.+..+.++|+++|=|--.+-+. + .+.+.+++++++..+ + ..|.+-++.. +.+..-.+.+
T Consensus 165 ~~i~~~A~~~~~~GADIIDIG~~st~p-------~-~~~v~~~V~~l~~~~-~----~pISIDT~~~---~v~eaAL~aG 228 (499)
T TIGR00284 165 DGIEGLAARMERDGADMVALGTGSFDD-------D-PDVVKEKVKTALDAL-D----SPVIADTPTL---DELYEALKAG 228 (499)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCcCCC-------c-HHHHHHHHHHHHhhC-C----CcEEEeCCCH---HHHHHHHHcC
Confidence 567777888899999999887544332 1 224566666665432 2 3477777743 4666667778
Q ss_pred CcEEEEecCCCCh-hhHHHhhhcccCCCeEeeeeecCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEcCCCCC
Q 003819 693 ADVITIENSRSDE-KLLSVFREGVKYRAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLESNILWVNPDCGL 763 (793)
Q Consensus 693 ~D~isiE~~r~~~-~~L~~~~~~~~~~~~i~~GVvD~~s~~ves~eev~~~i~~al~~i~~~~l~vsPdCGL 763 (793)
+|.|. +.+..+. +.+...++ ++. ++|=.|+..-++.+.+.++++.+.+ .|.+++++-|.=|+
T Consensus 229 AdiIN-sVs~~~~d~~~~l~a~---~g~----~vVlm~~~~~~~~~~l~~~ie~a~~-~Gi~~IIlDPglg~ 291 (499)
T TIGR00284 229 ASGVI-MPDVENAVELASEKKL---PED----AFVVVPGNQPTNYEELAKAVKKLRT-SGYSKVAADPSLSP 291 (499)
T ss_pred CCEEE-ECCccchhHHHHHHHH---cCC----eEEEEcCCCCchHHHHHHHHHHHHH-CCCCcEEEeCCCCc
Confidence 88766 3322222 23333443 122 2222233233456788888887765 57788999666664
No 117
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=57.90 E-value=2.8e+02 Score=36.56 Aligned_cols=153 Identities=15% Similarity=0.147 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHHHHHHcCCcEEEEcC-cccccCCCCCcccHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCC----C---
Q 003819 608 CYQIALAIKDEVEDLEKAGITVIQIDE-AALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCY----S--- 679 (793)
Q Consensus 608 ~~~lA~al~~ev~~L~~aGv~~IQIDE-Pal~~~l~l~~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~C~----g--- 679 (793)
.+++...+++.++.|.+.||++|-+.= |.+. -...++.+.+.+.+....+..+.+.+.+ |
T Consensus 159 ~del~~~y~eQi~~L~e~GVDllliETi~d~~------------EakAal~a~~~~~~~~~~~lPv~vS~T~~d~~Gr~l 226 (1229)
T PRK09490 159 FDELVAAYREQTRGLIEGGADLILIETIFDTL------------NAKAAIFAVEEVFEELGVRLPVMISGTITDASGRTL 226 (1229)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEeeeCCHH------------HHHHHHHHHHHHHhhcCCCCeEEEEEEEECCCCccC
Confidence 467888999999999999999876652 1111 1234555555543322223345554443 1
Q ss_pred ---CchhHHHHHHcCCCcEEEEecCCCChhh---HHHhhhcccCCCeEe----eeeecCCCCCCCCHHHHHHHHHHHHhh
Q 003819 680 ---NFNDIIHSIMDMDADVITIENSRSDEKL---LSVFREGVKYRAGIG----PGVYDIHSPRIPSTEEIADRINKMLAV 749 (793)
Q Consensus 680 ---~~~~i~~~l~~l~~D~isiE~~r~~~~~---L~~~~~~~~~~~~i~----~GVvD~~s~~ves~eev~~~i~~al~~ 749 (793)
+...++..+..+++++|++-.+.+..+. ++.+.. . .+..|+ .|.-+....+-.+|++..+.+.+..+.
T Consensus 227 sG~~~ea~~~~l~~~~~~avGlNCs~GP~~m~~~l~~l~~-~-~~~pi~vyPNAGlP~~~~~yd~tPe~~a~~~~~~~~~ 304 (1229)
T PRK09490 227 SGQTTEAFWNSLRHAKPLSIGLNCALGADELRPYVEELSR-I-ADTYVSAHPNAGLPNAFGEYDETPEEMAAQIGEFAES 304 (1229)
T ss_pred CCCcHHHHHHHHhcCCCCEEEEcCCCcHHHHHHHHHHHHH-h-cCCeEEEEeCCCCCCCCCCCCCCHHHHHHHHHHHHHc
Confidence 2456777777899999999877543333 333332 1 112222 243333334556999999999998773
Q ss_pred cCCCcEEEcCCCCCCCCChhHHHHHHHHHHH
Q 003819 750 LESNILWVNPDCGLKTRKYSEVKPALSNMVA 780 (793)
Q Consensus 750 i~~~~l~vsPdCGL~t~~~~~~~~kL~~mv~ 780 (793)
|. --+|.=.||-. ++-.++|+.++.
T Consensus 305 -G~-v~IIGGCCGTt----PeHI~ala~~l~ 329 (1229)
T PRK09490 305 -GF-LNIVGGCCGTT----PEHIAAIAEAVA 329 (1229)
T ss_pred -CC-CCEEEecCCCC----HHHHHHHHHHHh
Confidence 31 23788889963 344455555443
No 118
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=57.73 E-value=49 Score=34.49 Aligned_cols=105 Identities=18% Similarity=0.153 Sum_probs=59.2
Q ss_pred HHHHHHHHHCCCCEEEeeccccccCCChHHHHHHHHHHHHHHhccCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEEe
Q 003819 189 KEVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDL 268 (793)
Q Consensus 189 ~~~l~~L~~aG~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~lp~Vd~l~lD~ 268 (793)
.+.+++..+.|++.||+=|.-... .+.....+....+.+.. ++.+++.-+ ++.....+ .||+||--
T Consensus 24 ~~~ve~al~~Gv~~vQlR~K~~~~----~~~~~~a~~~~~lc~~~-~v~liINd~--------~dlA~~~~-AdGVHlGq 89 (211)
T COG0352 24 LEWVEAALKGGVTAVQLREKDLSD----EEYLALAEKLRALCQKY-GVPLIINDR--------VDLALAVG-ADGVHLGQ 89 (211)
T ss_pred HHHHHHHHhCCCeEEEEecCCCCh----HHHHHHHHHHHHHHHHh-CCeEEecCc--------HHHHHhCC-CCEEEcCC
Confidence 355666778999999998865442 23223333333343322 356666632 44556788 99999986
Q ss_pred ccCCCChhhHhhhCCCCCEEEEEEeeCCCCCCCCHHHHHHHHHHHhhhc
Q 003819 269 IRGTKTLDLIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTV 317 (793)
Q Consensus 269 ~~~~~~l~~l~~~~p~~k~l~lGvVdgrn~w~ed~~~i~~~i~~~~~~v 317 (793)
.+- ......+-++.++.|++++ .|++++.+-.+....|+
T Consensus 90 ~D~--~~~~ar~~~~~~~iIG~S~--------h~~eea~~A~~~g~DYv 128 (211)
T COG0352 90 DDM--PLAEARELLGPGLIIGLST--------HDLEEALEAEELGADYV 128 (211)
T ss_pred ccc--chHHHHHhcCCCCEEEeec--------CCHHHHHHHHhcCCCEE
Confidence 542 2333443466665666554 26676544433323333
No 119
>PRK10508 hypothetical protein; Provisional
Probab=56.87 E-value=18 Score=40.37 Aligned_cols=48 Identities=6% Similarity=0.072 Sum_probs=42.7
Q ss_pred CCCHHHHHHHHHHHHhhcCCCcEEEcCCCCCCCCChhHHHHHHHHHHHHHHH
Q 003819 733 IPSTEEIADRINKMLAVLESNILWVNPDCGLKTRKYSEVKPALSNMVAAAKL 784 (793)
Q Consensus 733 ves~eev~~~i~~al~~i~~~~l~vsPdCGL~t~~~~~~~~kL~~mv~aa~~ 784 (793)
+.|||+|+++|++..+..|.+++++.+.| .+.+...++++.+.++.++
T Consensus 285 vGtpe~V~~kl~~l~~~~g~del~~~~~~----~~~e~~~~S~~lla~~~~~ 332 (333)
T PRK10508 285 VGDKAKVRHGLQSILRETQADEIMVNGQI----FDHQARLHSFELAMDVKEE 332 (333)
T ss_pred EeCHHHHHHHHHHHHHHHCcCEEEEECCC----CCHHHHHHHHHHHHHHhhh
Confidence 57999999999999999999999999998 4788888999999888765
No 120
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=56.60 E-value=2.1e+02 Score=31.96 Aligned_cols=135 Identities=13% Similarity=0.057 Sum_probs=77.7
Q ss_pred HHHHHHHHCCCCEEEee------ccccccCCC-hHHHHHHHHHHHHHHhccCCCcEEEEe--ccCCCchhhHHHHhcCCC
Q 003819 190 EVVAELKAAGATWIQFD------EPTLVLDLD-SHKLQAFSDAYSELQSSLSGLNVLIET--YFADVPAETYKILTSLKG 260 (793)
Q Consensus 190 ~~l~~L~~aG~~~VQiD------EP~L~~d~~-~~~~~~~~~~y~~l~~~~~~~~i~l~t--yfg~~~~~~~~~l~~lp~ 260 (793)
++++.|.++|+++|.+= .-.+....+ ..+.+.++.+...+. +.++.... -.+.. .+ ++...+.+
T Consensus 28 ~ia~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~~~~~~e~i~~~~~~~~----~~~~~~ll~pg~~~~-~d-l~~a~~~g- 100 (333)
T TIGR03217 28 AIAAALDEAGVDAIEVTHGDGLGGSSFNYGFSAHTDLEYIEAAADVVK----RAKVAVLLLPGIGTV-HD-LKAAYDAG- 100 (333)
T ss_pred HHHHHHHHcCCCEEEEecCCCCCCccccCCCCCCChHHHHHHHHHhCC----CCEEEEEeccCccCH-HH-HHHHHHCC-
Confidence 45677889999999993 112221111 113344444443332 23332221 12333 33 55666778
Q ss_pred ccEEEEEeccCC-CChhhHhhhC-CCCCEEEEEEeeCCCCCCCCHHHHHHHHHHHhhhcCCCcEEEeCCCCCcccccc
Q 003819 261 VTGFGFDLIRGT-KTLDLIKTEF-PLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVSTSCSLLHTAVD 336 (793)
Q Consensus 261 Vd~l~lD~~~~~-~~l~~l~~~~-p~~k~l~lGvVdgrn~w~ed~~~i~~~i~~~~~~v~~e~l~vspsCgL~hvP~~ 336 (793)
||.+.+=+.-.. .......+.. ..+..+...+.++ .+.+++.+++.++.+.+ .|++.++|.-+.|.+ +|.+
T Consensus 101 vd~iri~~~~~e~d~~~~~i~~ak~~G~~v~~~l~~s---~~~~~e~l~~~a~~~~~-~Ga~~i~i~DT~G~~-~P~~ 173 (333)
T TIGR03217 101 ARTVRVATHCTEADVSEQHIGMARELGMDTVGFLMMS---HMTPPEKLAEQAKLMES-YGADCVYIVDSAGAM-LPDD 173 (333)
T ss_pred CCEEEEEeccchHHHHHHHHHHHHHcCCeEEEEEEcc---cCCCHHHHHHHHHHHHh-cCCCEEEEccCCCCC-CHHH
Confidence 998887543221 1111111111 2356788888876 46789999999998866 688999999999986 3644
No 121
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=55.82 E-value=87 Score=32.67 Aligned_cols=66 Identities=21% Similarity=0.269 Sum_probs=40.8
Q ss_pred HHHHHHHHcCCcEEEEcCcccccCCCCCcccHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCchhHHHHHHcCCCcEE
Q 003819 617 DEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDADVI 696 (793)
Q Consensus 617 ~ev~~L~~aGv~~IQIDEPal~~~l~l~~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~C~g~~~~i~~~l~~l~~D~i 696 (793)
+.+++..+.|++.||+-|..... .++.+.+.++-..+ ..- .++..++ +-++.-.+.++|++
T Consensus 25 ~~ve~al~~Gv~~vQlR~K~~~~---------~~~~~~a~~~~~lc-~~~--~v~liIN-------d~~dlA~~~~AdGV 85 (211)
T COG0352 25 EWVEAALKGGVTAVQLREKDLSD---------EEYLALAEKLRALC-QKY--GVPLIIN-------DRVDLALAVGADGV 85 (211)
T ss_pred HHHHHHHhCCCeEEEEecCCCCh---------HHHHHHHHHHHHHH-HHh--CCeEEec-------CcHHHHHhCCCCEE
Confidence 44666778899999999865432 33444544444333 332 2345543 34666678999999
Q ss_pred EEecC
Q 003819 697 TIENS 701 (793)
Q Consensus 697 siE~~ 701 (793)
++-..
T Consensus 86 HlGq~ 90 (211)
T COG0352 86 HLGQD 90 (211)
T ss_pred EcCCc
Confidence 98754
No 122
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=55.58 E-value=2.8e+02 Score=29.51 Aligned_cols=146 Identities=14% Similarity=0.217 Sum_probs=82.6
Q ss_pred HHHHHHHHHcCCcEEEEcCc------ccccCCCCCcccHHHHHHHHHHHHHHHhcCCCCCCeEE--EEeCCCCchhHHHH
Q 003819 616 KDEVEDLEKAGITVIQIDEA------ALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVH--THMCYSNFNDIIHS 687 (793)
Q Consensus 616 ~~ev~~L~~aGv~~IQIDEP------al~~~l~l~~~~~~~~l~~av~a~~~~~~~v~~~~~I~--lH~C~g~~~~i~~~ 687 (793)
.+.++.|.++|+++|.+==| ...-. +.. .+..+ .+..++. ..+ .+++. ++.++++..+ ++.
T Consensus 25 ~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~-~~~-~~~~e----~i~~~~~---~~~-~~~~~~~~~~~~~~~~~-i~~ 93 (263)
T cd07943 25 RAIARALDAAGVPLIEVGHGDGLGGSSLNYG-FAA-HTDEE----YLEAAAE---ALK-QAKLGVLLLPGIGTVDD-LKM 93 (263)
T ss_pred HHHHHHHHHcCCCEEEeecCCCCCCcccccC-CCC-CChHH----HHHHHHH---hcc-CCEEEEEecCCccCHHH-HHH
Confidence 34456788999999988532 11111 111 11212 2223322 222 23432 2334666655 567
Q ss_pred HHcCCCcEEEEecCCCChhhHH-HhhhcccCCCeEeeeeecCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEcCCCCCCCC
Q 003819 688 IMDMDADVITIENSRSDEKLLS-VFREGVKYRAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLESNILWVNPDCGLKTR 766 (793)
Q Consensus 688 l~~l~~D~isiE~~r~~~~~L~-~~~~~~~~~~~i~~GVvD~~s~~ves~eev~~~i~~al~~i~~~~l~vsPdCGL~t~ 766 (793)
..+.++|.+.+-.+-++.+.+. ..+.....+..+.+.+.|+.. -+++.+.+.++++.+ .|++.+.+.-..|..
T Consensus 94 a~~~g~~~iri~~~~s~~~~~~~~i~~ak~~G~~v~~~~~~~~~---~~~~~~~~~~~~~~~-~G~d~i~l~DT~G~~-- 167 (263)
T cd07943 94 AADLGVDVVRVATHCTEADVSEQHIGAARKLGMDVVGFLMMSHM---ASPEELAEQAKLMES-YGADCVYVTDSAGAM-- 167 (263)
T ss_pred HHHcCCCEEEEEechhhHHHHHHHHHHHHHCCCeEEEEEEeccC---CCHHHHHHHHHHHHH-cCCCEEEEcCCCCCc--
Confidence 7788999999876655443332 222211234567777766632 478899888888765 688999998777764
Q ss_pred ChhHHHHHHHHH
Q 003819 767 KYSEVKPALSNM 778 (793)
Q Consensus 767 ~~~~~~~kL~~m 778 (793)
+|+++..-++.+
T Consensus 168 ~P~~v~~lv~~l 179 (263)
T cd07943 168 LPDDVRERVRAL 179 (263)
T ss_pred CHHHHHHHHHHH
Confidence 565544433333
No 123
>cd00530 PTE Phosphotriesterase (PTE) catalyzes the hydrolysis of organophosphate nerve agents, including the chemical warfare agents VX, soman, and sarin as well as the insecticide paraoxon. PTE exists as a homodimer with one active site per monomer. The active site is located next to a binuclear metal center, at the C-terminal end of a TIM alpha- beta barrel motif. The native enzyme contains two zinc ions at the active site however these can be replaced with other metals such as cobalt, cadmium, nickel or manganese and the enzyme remains active.
Probab=55.53 E-value=1.1e+02 Score=32.86 Aligned_cols=93 Identities=17% Similarity=0.090 Sum_probs=56.9
Q ss_pred CeEEEEeCCC--CchhHHHHHHcCCCcE--EEEe-cCC-CChhhHHHhhhcccCCCeEeeeeecCC-CCCCCCHHHHHHH
Q 003819 670 TQVHTHMCYS--NFNDIIHSIMDMDADV--ITIE-NSR-SDEKLLSVFREGVKYRAGIGPGVYDIH-SPRIPSTEEIADR 742 (793)
Q Consensus 670 ~~I~lH~C~g--~~~~i~~~l~~l~~D~--isiE-~~r-~~~~~L~~~~~~~~~~~~i~~GVvD~~-s~~ves~eev~~~ 742 (793)
..|++|+.-+ ...++++.+.+.+++. +.+- .-+ .+.+.++.+.+ .+-.++++...+. .....+.+...+.
T Consensus 150 ~Pv~iH~~~~~~~~~~~l~~l~~~g~~~~~~vi~H~~~~~~~~~~~~~~~---~G~~i~~~~~~~~~~~~~~~~~~~~~~ 226 (293)
T cd00530 150 VPISTHTQAGLTMGLEQLRILEEEGVDPSKVVIGHLDRNDDPDYLLKIAA---LGAYLEFDGIGKDKIFGYPSDETRADA 226 (293)
T ss_pred CeEEEcCCCCccccHHHHHHHHHcCCChhheEEeCCCCCCCHHHHHHHHh---CCCEEEeCCCCcccccCCCCHHHHHHH
Confidence 4589997643 4667888887766532 2232 111 24455555554 2334555433221 1123345667788
Q ss_pred HHHHHhhcCCCcEEEcCCCCCCC
Q 003819 743 INKMLAVLESNILWVNPDCGLKT 765 (793)
Q Consensus 743 i~~al~~i~~~~l~vsPdCGL~t 765 (793)
++++++.++.+++.+++|++..+
T Consensus 227 l~~~~~~~~~d~ill~TD~p~~~ 249 (293)
T cd00530 227 VKALIDEGYGDRLLLSHDVFRKS 249 (293)
T ss_pred HHHHHHCCCcCCEEEeCCcCchh
Confidence 99999999999999999998864
No 124
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=55.42 E-value=44 Score=36.25 Aligned_cols=67 Identities=10% Similarity=0.128 Sum_probs=41.8
Q ss_pred HHHHHHHHCCCCEEEeeccccccCCChHHHHHHHHHHHHHHhccCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEEec
Q 003819 190 EVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLI 269 (793)
Q Consensus 190 ~~l~~L~~aG~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~lp~Vd~l~lD~~ 269 (793)
+++.+..++|++.||+|.+. .+.++++...+....+++.+... |++..+++..+.++. ||.+.+=..
T Consensus 193 eea~~A~~~GaDiI~LDn~~---------~e~l~~~v~~~~~~~~~~~ieAs---GgIt~~ni~~ya~~G-vD~IsvG~l 259 (273)
T PRK05848 193 EEAKNAMNAGADIVMCDNMS---------VEEIKEVVAYRNANYPHVLLEAS---GNITLENINAYAKSG-VDAISSGSL 259 (273)
T ss_pred HHHHHHHHcCCCEEEECCCC---------HHHHHHHHHHhhccCCCeEEEEE---CCCCHHHHHHHHHcC-CCEEEeChh
Confidence 34455668999999999762 33444454444322222333333 666457888889998 999876543
No 125
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=54.36 E-value=68 Score=32.46 Aligned_cols=74 Identities=24% Similarity=0.314 Sum_probs=42.9
Q ss_pred HHHHHHHHHHcCCcEEEEcCcccccCCCCCcccHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCchhHHHHHHcCCCc
Q 003819 615 IKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDAD 694 (793)
Q Consensus 615 l~~ev~~L~~aGv~~IQIDEPal~~~l~l~~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~C~g~~~~i~~~l~~l~~D 694 (793)
+.++++.+.++|+++||+|...... .+... +.-..+..++..+ . ..+.+|+..-|..+.++.+.++++|
T Consensus 14 ~~~~~~~~~~~G~~~i~l~~~d~~~-~~~~~-----~~~~~~~~i~~~~-~----~~~~v~l~~~d~~~~~~~~~~~g~d 82 (211)
T cd00429 14 LGEELKRLEEAGADWIHIDVMDGHF-VPNLT-----FGPPVVKALRKHT-D----LPLDVHLMVENPERYIEAFAKAGAD 82 (211)
T ss_pred HHHHHHHHHHcCCCEEEEecccCCC-CCccc-----cCHHHHHHHHhhC-C----CcEEEEeeeCCHHHHHHHHHHcCCC
Confidence 5667888999999999998643211 01000 1011233343322 1 2244555544655678888899999
Q ss_pred EEEEe
Q 003819 695 VITIE 699 (793)
Q Consensus 695 ~isiE 699 (793)
++.+-
T Consensus 83 gv~vh 87 (211)
T cd00429 83 IITFH 87 (211)
T ss_pred EEEEC
Confidence 97554
No 126
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=54.08 E-value=1.5e+02 Score=38.70 Aligned_cols=127 Identities=15% Similarity=0.173 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHHHHHHCCCCEEEeeccccccCCChHHHHHHHHHHHHHHhc-cCCCcEEEE-eccCC-Cc-------hh
Q 003819 181 IDKIIPVYKEVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSS-LSGLNVLIE-TYFAD-VP-------AE 250 (793)
Q Consensus 181 l~~L~~~Y~~~l~~L~~aG~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~-~~~~~i~l~-tyfg~-~~-------~~ 250 (793)
.+++...|.+.++.|.+.||+.|=+.- + .+-.+..+...+.+...+. ..+..++++ +.+.. .. ..
T Consensus 143 ~del~~~y~eq~~~L~~~GvD~iliET-i----~d~~EakAal~a~~~~~~~~~~~lPv~vS~~~~d~~Gr~~~G~~~~~ 217 (1178)
T TIGR02082 143 YDELVDAYTEQAKGLLDGGVDLLLIET-C----FDTLNAKAALFAAETVFEEKGRELPIMISGTIVDTSGRTLSGQTIEA 217 (1178)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEec-c----CCHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEECCCCeeCCCCcHHH
Confidence 478999999999999999999876651 1 1223444444444443221 124577887 66632 10 45
Q ss_pred hHHHHhcCCCccEEEEEeccCCCChhhHhhhCC--CCCEEE----EEEeeCCCCCCCCHHHHHHHHHHH
Q 003819 251 TYKILTSLKGVTGFGFDLIRGTKTLDLIKTEFP--LGKYLF----AGVVDGRNIWANDLASSLTTLQDL 313 (793)
Q Consensus 251 ~~~~l~~lp~Vd~l~lD~~~~~~~l~~l~~~~p--~~k~l~----lGvVdgrn~w~ed~~~i~~~i~~~ 313 (793)
.+..+..++ ++++++.+..++..+.++.+.+. .++-|+ +|+-+....|-+++++..+.+++.
T Consensus 218 ~~~~l~~~~-~~avGlNCs~gP~~m~~~l~~l~~~~~~pi~vyPNAGlP~~~~~yd~~p~~~a~~~~~~ 285 (1178)
T TIGR02082 218 FLTSLEHAG-IDMIGLNCALGPDEMRPHLKHLSEHAEAYVSCHPNAGLPNAFGEYDLTPDELAKALADF 285 (1178)
T ss_pred HHHHHhcCC-CCEEEeCCCCCHHHHHHHHHHHHHhcCceEEEEeCCCCCCCCCcccCCHHHHHHHHHHH
Confidence 566666788 99999999987665555443231 122333 255555557888887765555443
No 127
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=53.98 E-value=1.2e+02 Score=31.46 Aligned_cols=142 Identities=15% Similarity=0.224 Sum_probs=78.4
Q ss_pred HHHHHHHHHcCCcEEEEcCcccccCCCCCcccHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCC---chhHHHHHHcCC
Q 003819 616 KDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSN---FNDIIHSIMDMD 692 (793)
Q Consensus 616 ~~ev~~L~~aGv~~IQIDEPal~~~l~l~~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~C~g~---~~~i~~~l~~l~ 692 (793)
.+.++.|.++|+++|.+=-|...+ +..+.++. +...... +.+.++ |... ....++.+.+.+
T Consensus 17 ~~i~~~L~~~Gv~~iEvg~~~~~~-------~~~~~v~~----~~~~~~~----~~~~~~-~~~~~~~i~~~~~~~~~~g 80 (237)
T PF00682_consen 17 LEIAKALDEAGVDYIEVGFPFASE-------DDFEQVRR----LREALPN----ARLQAL-CRANEEDIERAVEAAKEAG 80 (237)
T ss_dssp HHHHHHHHHHTTSEEEEEHCTSSH-------HHHHHHHH----HHHHHHS----SEEEEE-EESCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCCEEEEcccccCH-------HHHHHhhh----hhhhhcc----ccccee-eeehHHHHHHHHHhhHhcc
Confidence 344567888999999988444332 12222222 2222222 334443 3233 233355556799
Q ss_pred CcEEEEecCCCC--------------hhhHH-HhhhcccCCCeEeeeeecCCCCCCCCHHHHHHHHHHHHhhcCCCcEEE
Q 003819 693 ADVITIENSRSD--------------EKLLS-VFREGVKYRAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLESNILWV 757 (793)
Q Consensus 693 ~D~isiE~~r~~--------------~~~L~-~~~~~~~~~~~i~~GVvD~~s~~ves~eev~~~i~~al~~i~~~~l~v 757 (793)
+|.+.+-.+.++ .+.+. .++.....+..+.+|..|.. .-+++++.+.++++.+. |++.+.+
T Consensus 81 ~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~---~~~~~~~~~~~~~~~~~-g~~~i~l 156 (237)
T PF00682_consen 81 IDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCEDAS---RTDPEELLELAEALAEA-GADIIYL 156 (237)
T ss_dssp SSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTG---GSSHHHHHHHHHHHHHH-T-SEEEE
T ss_pred CCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCccccc---cccHHHHHHHHHHHHHc-CCeEEEe
Confidence 999998866654 22221 11110124557888887753 24678888888888764 8898988
Q ss_pred cCCCCCCCCChhHHHHHHHHHH
Q 003819 758 NPDCGLKTRKYSEVKPALSNMV 779 (793)
Q Consensus 758 sPdCGL~t~~~~~~~~kL~~mv 779 (793)
.-.-|.. +|..+..-++.+.
T Consensus 157 ~Dt~G~~--~P~~v~~lv~~~~ 176 (237)
T PF00682_consen 157 ADTVGIM--TPEDVAELVRALR 176 (237)
T ss_dssp EETTS-S---HHHHHHHHHHHH
T ss_pred eCccCCc--CHHHHHHHHHHHH
Confidence 8766664 5655544444433
No 128
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=53.51 E-value=2.9e+02 Score=28.98 Aligned_cols=150 Identities=14% Similarity=0.176 Sum_probs=88.9
Q ss_pred HHHHHHHHHcCCcEEEEcCcccccCCCCCcccHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCchhHHHHHHcCCCcE
Q 003819 616 KDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDADV 695 (793)
Q Consensus 616 ~~ev~~L~~aGv~~IQIDEPal~~~l~l~~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~C~g~~~~i~~~l~~l~~D~ 695 (793)
.+.+..|.++|+++|.+==|.-....|... +. .+.++.+.+..+ ...+.. +|... .+.++.+.+.+++.
T Consensus 22 ~~i~~~L~~~GV~~IEvg~~~~~~~~p~~~-~~-------~~~i~~l~~~~~-~~~~~~-l~~~~-~~~i~~a~~~g~~~ 90 (265)
T cd03174 22 LEIAEALDEAGVDSIEVGSGASPKAVPQME-DD-------WEVLRAIRKLVP-NVKLQA-LVRNR-EKGIERALEAGVDE 90 (265)
T ss_pred HHHHHHHHHcCCCEEEeccCcCccccccCC-CH-------HHHHHHHHhccC-CcEEEE-EccCc-hhhHHHHHhCCcCE
Confidence 344566788999999988776543333332 22 123333333332 234433 34332 46688888999998
Q ss_pred EEEecCCC--------------Chh-hHHHhhhcccCCCeEeeeeecCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEcCC
Q 003819 696 ITIENSRS--------------DEK-LLSVFREGVKYRAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLESNILWVNPD 760 (793)
Q Consensus 696 isiE~~r~--------------~~~-~L~~~~~~~~~~~~i~~GVvD~~s~~ves~eev~~~i~~al~~i~~~~l~vsPd 760 (793)
+.+=..-+ ..+ .++.++.....+..+.+.+.++..+ ..+++++.+.++.+.+ .|++.+.+...
T Consensus 91 i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~-~~~~~~l~~~~~~~~~-~g~~~i~l~Dt 168 (265)
T cd03174 91 VRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGC-KTDPEYVLEVAKALEE-AGADEISLKDT 168 (265)
T ss_pred EEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCC-CCCHHHHHHHHHHHHH-cCCCEEEechh
Confidence 88764333 111 1122221112355688888777665 5689999888888876 58888988877
Q ss_pred CCCCCCChhHHHHHHHHHHH
Q 003819 761 CGLKTRKYSEVKPALSNMVA 780 (793)
Q Consensus 761 CGL~t~~~~~~~~kL~~mv~ 780 (793)
-|. .+++++..-++.+.+
T Consensus 169 ~G~--~~P~~v~~li~~l~~ 186 (265)
T cd03174 169 VGL--ATPEEVAELVKALRE 186 (265)
T ss_pred cCC--cCHHHHHHHHHHHHH
Confidence 665 567666555555443
No 129
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=52.75 E-value=55 Score=32.91 Aligned_cols=65 Identities=26% Similarity=0.238 Sum_probs=38.3
Q ss_pred HHHHHHHHcCCcEEEEcCcccccCCCCCcccHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCchhHHHHHHcCCCcEE
Q 003819 617 DEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDADVI 696 (793)
Q Consensus 617 ~ev~~L~~aGv~~IQIDEPal~~~l~l~~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~C~g~~~~i~~~l~~l~~D~i 696 (793)
+|+.+..++|+++||+|.+.. +.+..+++.++..-. . +.+-.+.|=-.+.+..+.++++|+|
T Consensus 91 ee~~ea~~~g~d~I~lD~~~~------------~~~~~~v~~l~~~~~----~--v~ie~SGGI~~~ni~~ya~~gvD~i 152 (169)
T PF01729_consen 91 EEAEEALEAGADIIMLDNMSP------------EDLKEAVEELRELNP----R--VKIEASGGITLENIAEYAKTGVDVI 152 (169)
T ss_dssp HHHHHHHHTT-SEEEEES-CH------------HHHHHHHHHHHHHTT----T--SEEEEESSSSTTTHHHHHHTT-SEE
T ss_pred HHHHHHHHhCCCEEEecCcCH------------HHHHHHHHHHhhcCC----c--EEEEEECCCCHHHHHHHHhcCCCEE
Confidence 355666679999999998642 234445554433322 2 3344453323456788899999999
Q ss_pred EEe
Q 003819 697 TIE 699 (793)
Q Consensus 697 siE 699 (793)
++=
T Consensus 153 svg 155 (169)
T PF01729_consen 153 SVG 155 (169)
T ss_dssp EEC
T ss_pred EcC
Confidence 984
No 130
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=52.41 E-value=82 Score=33.34 Aligned_cols=77 Identities=17% Similarity=0.208 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHCCCCEEEeeccccccCCChHHHH--------------HHHHHHHHHHhccCCCcEEEEeccCC-----C
Q 003819 187 VYKEVVAELKAAGATWIQFDEPTLVLDLDSHKLQ--------------AFSDAYSELQSSLSGLNVLIETYFAD-----V 247 (793)
Q Consensus 187 ~Y~~~l~~L~~aG~~~VQiDEP~L~~d~~~~~~~--------------~~~~~y~~l~~~~~~~~i~l~tyfg~-----~ 247 (793)
...+.++.|.++||++|+||=|.--.-.+...++ ..-+..+.+.+.. +.++++-+||.. +
T Consensus 15 ~~~~~~~~l~~~Gad~iel~iPfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~-~~pv~lm~y~n~~~~~G~ 93 (242)
T cd04724 15 TTLEILKALVEAGADIIELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKN-TIPIVLMGYYNPILQYGL 93 (242)
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcC-CCCEEEEEecCHHHHhCH
Confidence 3456778899999999999965521111222222 2222333333322 345777788764 3
Q ss_pred chhhHHHHhcCCCccEEEE
Q 003819 248 PAETYKILTSLKGVTGFGF 266 (793)
Q Consensus 248 ~~~~~~~l~~lp~Vd~l~l 266 (793)
+..++.+.+.. +||+-+
T Consensus 94 -~~fi~~~~~aG-~~giii 110 (242)
T cd04724 94 -ERFLRDAKEAG-VDGLII 110 (242)
T ss_pred -HHHHHHHHHCC-CcEEEE
Confidence 55677888888 999888
No 131
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=51.41 E-value=1.3e+02 Score=39.35 Aligned_cols=127 Identities=18% Similarity=0.239 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHHHHHHCCCCEEEeeccccccCCChHHHHHHHHHHHHHHhc-cCCCcEEEEecc-C-CCc-------hh
Q 003819 181 IDKIIPVYKEVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSS-LSGLNVLIETYF-A-DVP-------AE 250 (793)
Q Consensus 181 l~~L~~~Y~~~l~~L~~aG~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~-~~~~~i~l~tyf-g-~~~-------~~ 250 (793)
.+++...|.+.++.|.+.||+.|=+.- + .+-.+..+...+.+...+. ..+..++++.-| + +.. ..
T Consensus 159 ~del~~~y~eQi~~L~e~GVDllliET-i----~d~~EakAal~a~~~~~~~~~~~lPv~vS~T~~d~~Gr~lsG~~~ea 233 (1229)
T PRK09490 159 FDELVAAYREQTRGLIEGGADLILIET-I----FDTLNAKAAIFAVEEVFEELGVRLPVMISGTITDASGRTLSGQTTEA 233 (1229)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEee-e----CCHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEECCCCccCCCCcHHH
Confidence 378999999999999999999876652 1 1223444444454444322 113566666444 2 110 34
Q ss_pred hHHHHhcCCCccEEEEEeccCCCChhhHhhhCC--CCCEEE----EEEeeCCCCCCCCHHHHHHHHHHH
Q 003819 251 TYKILTSLKGVTGFGFDLIRGTKTLDLIKTEFP--LGKYLF----AGVVDGRNIWANDLASSLTTLQDL 313 (793)
Q Consensus 251 ~~~~l~~lp~Vd~l~lD~~~~~~~l~~l~~~~p--~~k~l~----lGvVdgrn~w~ed~~~i~~~i~~~ 313 (793)
.+..+..++ ++++++.+..++..+.++.+.+. .+.-|+ +|+-+....|-.++++..+.+++.
T Consensus 234 ~~~~l~~~~-~~avGlNCs~GP~~m~~~l~~l~~~~~~pi~vyPNAGlP~~~~~yd~tPe~~a~~~~~~ 301 (1229)
T PRK09490 234 FWNSLRHAK-PLSIGLNCALGADELRPYVEELSRIADTYVSAHPNAGLPNAFGEYDETPEEMAAQIGEF 301 (1229)
T ss_pred HHHHHhcCC-CCEEEEcCCCcHHHHHHHHHHHHHhcCCeEEEEeCCCCCCCCCCCCCCHHHHHHHHHHH
Confidence 444556788 99999999987666655543221 233444 677777778888888865555443
No 132
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=50.94 E-value=53 Score=35.90 Aligned_cols=65 Identities=15% Similarity=0.176 Sum_probs=39.1
Q ss_pred HHHHHHHCCCCEEEeeccccccCCChHHHHHHHHHHHHHHhccCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEEe
Q 003819 191 VVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDL 268 (793)
Q Consensus 191 ~l~~L~~aG~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~lp~Vd~l~lD~ 268 (793)
++.+..++|+++||+| ..+. +.++++...+.+..+++.+... |++..++++.+..+. ||+|.+=.
T Consensus 208 ea~eA~~~GaD~I~LD------n~~~---e~l~~av~~~~~~~~~i~leAs---GGIt~~ni~~ya~tG-vD~Isvgs 272 (288)
T PRK07428 208 QVQEALEYGADIIMLD------NMPV---DLMQQAVQLIRQQNPRVKIEAS---GNITLETIRAVAETG-VDYISSSA 272 (288)
T ss_pred HHHHHHHcCCCEEEEC------CCCH---HHHHHHHHHHHhcCCCeEEEEE---CCCCHHHHHHHHHcC-CCEEEEch
Confidence 3445568999999999 2332 3344444444321122333222 666567888888998 99887643
No 133
>PRK03512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=50.23 E-value=1.1e+02 Score=31.67 Aligned_cols=63 Identities=14% Similarity=0.166 Sum_probs=39.3
Q ss_pred HHHHHHcCCcEEEEcCcccccCCCCCcccHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCchhHHHHHHcCCCcEEEE
Q 003819 619 VEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDADVITI 698 (793)
Q Consensus 619 v~~L~~aGv~~IQIDEPal~~~l~l~~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~C~g~~~~i~~~l~~l~~D~isi 698 (793)
++.+.++|+.+||+-++.+.+ +++.+.+...... +... ...+.+| +-++...++++|++++
T Consensus 25 l~~~l~~G~~~vqLR~k~~~~---------~~~~~la~~l~~~-~~~~--~~~liIn-------d~~~lA~~~~adGVHl 85 (211)
T PRK03512 25 IERLLDAGVRTLQLRIKDRRD---------EEVEADVVAAIAL-GRRY--QARLFIN-------DYWRLAIKHQAYGVHL 85 (211)
T ss_pred HHHHHhCCCCEEEEcCCCCCH---------HHHHHHHHHHHHH-HHHh--CCeEEEe-------CHHHHHHHcCCCEEEc
Confidence 677888999999999887642 3343333333322 2222 2456666 2355666788899988
Q ss_pred ec
Q 003819 699 EN 700 (793)
Q Consensus 699 E~ 700 (793)
..
T Consensus 86 g~ 87 (211)
T PRK03512 86 GQ 87 (211)
T ss_pred Ch
Confidence 64
No 134
>PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=50.07 E-value=94 Score=35.96 Aligned_cols=108 Identities=11% Similarity=0.078 Sum_probs=61.6
Q ss_pred HHHHHHHHCCCCEEEeeccccccCCChHHHHHHHHHHHHHHhccCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEEec
Q 003819 190 EVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLI 269 (793)
Q Consensus 190 ~~l~~L~~aG~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~lp~Vd~l~lD~~ 269 (793)
+.++++.++|+++||+=|.-+. .++.....+....+.+.. +.++++..+ ++....++ .||+||--.
T Consensus 221 ~~ve~aL~aGv~~VQLReK~ls----~~el~~la~~l~~l~~~~-gv~LiIND~--------~dlAl~~g-AdGVHLGQe 286 (437)
T PRK12290 221 EWIERLLPLGINTVQLRIKDPQ----QADLEQQIIRAIALGREY-NAQVFINDY--------WQLAIKHQ-AYGVHLGQE 286 (437)
T ss_pred HHHHHHHhCCCCEEEEeCCCCC----HHHHHHHHHHHHHHHHHh-CCEEEEECH--------HHHHHHcC-CCEEEcChH
Confidence 4588889999999999987653 334433333334444322 357777744 44556778 999999854
Q ss_pred cCCCChhhHhhhCCCCCEEEEEEeeCCCCCCCCHHHHHHHHHHHhhhcCCCcEEEeC
Q 003819 270 RGTKTLDLIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVST 326 (793)
Q Consensus 270 ~~~~~l~~l~~~~p~~k~l~lGvVdgrn~w~ed~~~i~~~i~~~~~~v~~e~l~vsp 326 (793)
+-+ ...++..++.++. +|+= . -+++++ .+|.+ .|++=+.++|
T Consensus 287 DL~--~~~aR~ilg~~~i--IGvS-t-----Hs~eEl----~~A~~-~gaDYI~lGP 328 (437)
T PRK12290 287 DLE--EANLAQLTDAGIR--LGLS-T-----HGYYEL----LRIVQ-IQPSYIALGH 328 (437)
T ss_pred Hcc--hhhhhhhcCCCCE--EEEe-c-----CCHHHH----HHHhh-cCCCEEEECC
Confidence 321 1222322344444 4552 2 345554 23322 4667777766
No 135
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=49.72 E-value=3.5e+02 Score=28.78 Aligned_cols=139 Identities=14% Similarity=0.152 Sum_probs=83.7
Q ss_pred HHHHHHHHHcCCcEEEEcCcccccCCCCCcccHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCchhHHHHHHcCCCcE
Q 003819 616 KDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDADV 695 (793)
Q Consensus 616 ~~ev~~L~~aGv~~IQIDEPal~~~l~l~~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~C~g~~~~i~~~l~~l~~D~ 695 (793)
.+.++.|.++|++.|.+-=|...+ .++ +.++.+.+..+ .+.+..+ |..+.++ ++...+.+++.
T Consensus 23 ~~i~~~L~~~Gv~~iE~g~p~~~~------~~~--------e~~~~l~~~~~-~~~~~~~-~r~~~~~-v~~a~~~g~~~ 85 (259)
T cd07939 23 LAIARALDEAGVDEIEVGIPAMGE------EER--------EAIRAIVALGL-PARLIVW-CRAVKED-IEAALRCGVTA 85 (259)
T ss_pred HHHHHHHHHcCCCEEEEecCCCCH------HHH--------HHHHHHHhcCC-CCEEEEe-ccCCHHH-HHHHHhCCcCE
Confidence 344667889999999996555321 111 22333333222 3444444 4345444 56777889999
Q ss_pred EEEecCCCChh-----------hH-------HHhhhcccCCCeEeeeeecCCCCCCCCHHHHHHHHHHHHhhcCCCcEEE
Q 003819 696 ITIENSRSDEK-----------LL-------SVFREGVKYRAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLESNILWV 757 (793)
Q Consensus 696 isiE~~r~~~~-----------~L-------~~~~~~~~~~~~i~~GVvD~~s~~ves~eev~~~i~~al~~i~~~~l~v 757 (793)
+.+-.+.++.. .+ +..++ .+..+.+|..|... -+++.+.+.++++.+ .|++.+.+
T Consensus 86 i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~---~G~~v~~~~~~~~~---~~~~~~~~~~~~~~~-~G~~~i~l 158 (259)
T cd07939 86 VHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKD---RGLFVSVGAEDASR---ADPDFLIEFAEVAQE-AGADRLRF 158 (259)
T ss_pred EEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHH---CCCeEEEeeccCCC---CCHHHHHHHHHHHHH-CCCCEEEe
Confidence 98875544321 11 12222 23467777766532 478999999998876 58899999
Q ss_pred cCCCCCCCCChhHHHHHHHHHHH
Q 003819 758 NPDCGLKTRKYSEVKPALSNMVA 780 (793)
Q Consensus 758 sPdCGL~t~~~~~~~~kL~~mv~ 780 (793)
.-..|.. +|+++..-++.+.+
T Consensus 159 ~DT~G~~--~P~~v~~lv~~l~~ 179 (259)
T cd07939 159 ADTVGIL--DPFTTYELIRRLRA 179 (259)
T ss_pred CCCCCCC--CHHHHHHHHHHHHH
Confidence 8888865 66666555554443
No 136
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=48.94 E-value=3.6e+02 Score=30.42 Aligned_cols=140 Identities=13% Similarity=0.096 Sum_probs=82.9
Q ss_pred HHHHHHHcCCcEEEEcCcccccCCCCCcccHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCchhHHHHHHcCCCcEEE
Q 003819 618 EVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDADVIT 697 (793)
Q Consensus 618 ev~~L~~aGv~~IQIDEPal~~~l~l~~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~C~g~~~~i~~~l~~l~~D~is 697 (793)
.++.|.++|++.|.+-=|+..+. + .+.++.+.+..+ ...+. ..|..+..+ ++...+.+++.+.
T Consensus 28 ia~~L~~~Gv~~IEvG~p~~~~~------~--------~e~i~~i~~~~~-~~~i~-~~~r~~~~d-i~~a~~~g~~~i~ 90 (365)
T TIGR02660 28 IARALDEAGVDELEVGIPAMGEE------E--------RAVIRAIVALGL-PARLM-AWCRARDAD-IEAAARCGVDAVH 90 (365)
T ss_pred HHHHHHHcCCCEEEEeCCCCCHH------H--------HHHHHHHHHcCC-CcEEE-EEcCCCHHH-HHHHHcCCcCEEE
Confidence 45668889999999976654321 1 122333333322 23443 345555544 6778889999999
Q ss_pred EecCCCCh-----------hhHH----HhhhcccCCCeEeeeeecCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEcCCCC
Q 003819 698 IENSRSDE-----------KLLS----VFREGVKYRAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLESNILWVNPDCG 762 (793)
Q Consensus 698 iE~~r~~~-----------~~L~----~~~~~~~~~~~i~~GVvD~~s~~ves~eev~~~i~~al~~i~~~~l~vsPdCG 762 (793)
+=.+.|+. +.++ .++.....+..+.++.-|.. .-+++.+.+.++.+.+ .|++++.+.-..|
T Consensus 91 i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~~~~ed~~---r~~~~~l~~~~~~~~~-~Ga~~i~l~DT~G 166 (365)
T TIGR02660 91 ISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVSVGGEDAS---RADPDFLVELAEVAAE-AGADRFRFADTVG 166 (365)
T ss_pred EEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEEEeecCCC---CCCHHHHHHHHHHHHH-cCcCEEEEcccCC
Confidence 88655431 1121 11110112445777776642 2368888888888766 6889998888888
Q ss_pred CCCCChhHHHHHHHHHHH
Q 003819 763 LKTRKYSEVKPALSNMVA 780 (793)
Q Consensus 763 L~t~~~~~~~~kL~~mv~ 780 (793)
.. +|.++..-++.+.+
T Consensus 167 ~~--~P~~v~~lv~~l~~ 182 (365)
T TIGR02660 167 IL--DPFSTYELVRALRQ 182 (365)
T ss_pred CC--CHHHHHHHHHHHHH
Confidence 64 66666555555443
No 137
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=47.53 E-value=71 Score=34.66 Aligned_cols=64 Identities=19% Similarity=0.224 Sum_probs=40.0
Q ss_pred HHHHHHHHcCCcEEEEcCcccccCCCCCcccHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCc-hhHHHHHHcCCCcE
Q 003819 617 DEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNF-NDIIHSIMDMDADV 695 (793)
Q Consensus 617 ~ev~~L~~aGv~~IQIDEPal~~~l~l~~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~C~g~~-~~i~~~l~~l~~D~ 695 (793)
+|+....++|+++||+|.+... .+..++... -.+. + ++.+=.. |+. .+-+..+.++++|+
T Consensus 193 eea~~A~~~GaDiI~LDn~~~e------------~l~~~v~~~---~~~~-~--~~~ieAs-GgIt~~ni~~ya~~GvD~ 253 (273)
T PRK05848 193 EEAKNAMNAGADIVMCDNMSVE------------EIKEVVAYR---NANY-P--HVLLEAS-GNITLENINAYAKSGVDA 253 (273)
T ss_pred HHHHHHHHcCCCEEEECCCCHH------------HHHHHHHHh---hccC-C--CeEEEEE-CCCCHHHHHHHHHcCCCE
Confidence 4566667799999999997533 223333321 1111 1 2334444 554 36788899999999
Q ss_pred EEEe
Q 003819 696 ITIE 699 (793)
Q Consensus 696 isiE 699 (793)
|++=
T Consensus 254 IsvG 257 (273)
T PRK05848 254 ISSG 257 (273)
T ss_pred EEeC
Confidence 9986
No 138
>COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism]
Probab=47.30 E-value=4.4e+02 Score=29.28 Aligned_cols=155 Identities=15% Similarity=0.162 Sum_probs=92.2
Q ss_pred HHHHHHcCCcEEEEc---CcccccCCCCC-cccHHHHHHHHHHHHHHHhcCCCCCCeE-EEEeCCCCchhHHHHHHcCCC
Q 003819 619 VEDLEKAGITVIQID---EAALREGLPLR-KSEQDFYLKWAVHSFRITNCGVQDTTQV-HTHMCYSNFNDIIHSIMDMDA 693 (793)
Q Consensus 619 v~~L~~aGv~~IQID---EPal~~~l~l~-~~~~~~~l~~av~a~~~~~~~v~~~~~I-~lH~C~g~~~~i~~~l~~l~~ 693 (793)
+..+.++|++++|+- .=.+..+++-+ ......+-+..++..|+. ++- | ..|+-.- ..++.+.-.+.
T Consensus 114 L~~~~~~GvR~lgltwn~~N~~g~g~~~~~~~GLs~~Gk~lV~~~N~L--gIi----iDlSH~s~k---t~~Dvl~~s~~ 184 (313)
T COG2355 114 LELFHALGVRSLGLTWNRDNLFGDGCYERTGGGLTPFGKELVREMNEL--GII----IDLSHLSDK---TFWDVLDLSKA 184 (313)
T ss_pred HHHHHHhCceEEEeeeccCCcccCccCCCCCCCCCHHHHHHHHHHHhc--CCE----EEecccCCc---cHHHHHhccCC
Confidence 455778999999984 11123333222 112344555666666553 221 2 3455432 23444444554
Q ss_pred cEEE--------EecCCC-ChhhHHHhhhcccCCCeEeeeeecCCCC----CCCCHHHHHHHHHHHHhhcCCCcEEEcCC
Q 003819 694 DVIT--------IENSRS-DEKLLSVFREGVKYRAGIGPGVYDIHSP----RIPSTEEIADRINKMLAVLESNILWVNPD 760 (793)
Q Consensus 694 D~is--------iE~~r~-~~~~L~~~~~~~~~~~~i~~GVvD~~s~----~ves~eev~~~i~~al~~i~~~~l~vsPd 760 (793)
=++. ++..|+ ..+.++++.+ .+..||+=.+...-. ..+|.+++++-|.-+.+.+|.+.+.+.+|
T Consensus 185 PviaSHSN~~al~~h~RNl~D~qlkaI~~---~gGvIgv~~~~~fl~~~~~~~atldd~v~hI~h~v~~~G~dhVglGsD 261 (313)
T COG2355 185 PVVASHSNARALVDHPRNLSDEQLKAIAE---TGGVIGVNFIPAFLRPGGAARATLDDLVRHIDHFVELVGIDHVGLGSD 261 (313)
T ss_pred ceEEecCCchhccCCCCCCCHHHHHHHHh---cCCEEEEEeehhhccCCCCCCCCHHHHHHHHHHHHHhcCcceeEeccc
Confidence 4444 233444 4456777776 244566655554322 46799999999999999999999999998
Q ss_pred CCCCCCC--hhHHHHHHHHHHHHHHHH
Q 003819 761 CGLKTRK--YSEVKPALSNMVAAAKLL 785 (793)
Q Consensus 761 CGL~t~~--~~~~~~kL~~mv~aa~~~ 785 (793)
--=.+-+ .-+...+|.+|.++....
T Consensus 262 f~g~~~~p~gled~~~l~~l~~~L~~~ 288 (313)
T COG2355 262 FDGGTGPPDGLEDVGKLPNLTAALIER 288 (313)
T ss_pred ccCCCCCchhhcChhHHHHHHHHHHHc
Confidence 6555443 334468888887766543
No 139
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=46.98 E-value=40 Score=24.07 Aligned_cols=27 Identities=26% Similarity=0.267 Sum_probs=23.3
Q ss_pred HHHHHHHHHhhCCCCCHHHHHHHHHHH
Q 003819 15 RELKFALESFWDGKSSADELQNVAADL 41 (793)
Q Consensus 15 reLK~A~e~yw~g~is~~eL~~~~~~~ 41 (793)
..|++..+.|-+|.||++|+.+.-+++
T Consensus 3 ~~L~~L~~l~~~G~IseeEy~~~k~~l 29 (31)
T PF09851_consen 3 DRLEKLKELYDKGEISEEEYEQKKARL 29 (31)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 578888899999999999999876655
No 140
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=46.86 E-value=1.9e+02 Score=30.20 Aligned_cols=65 Identities=12% Similarity=0.057 Sum_probs=40.7
Q ss_pred HHHHHHHHcC-CcEEEEcCcccccCCCCCcccHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCchhHHHHHHcCCCcE
Q 003819 617 DEVEDLEKAG-ITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDADV 695 (793)
Q Consensus 617 ~ev~~L~~aG-v~~IQIDEPal~~~l~l~~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~C~g~~~~i~~~l~~l~~D~ 695 (793)
+.++.+.+.| +++||+-|+.+. ..++.+.+..... .+..- ++.+.++ +-++....+++|+
T Consensus 30 ~~l~~al~~G~v~~vQlR~K~l~---------~~~~~~~a~~l~~-l~~~~--gv~liIN-------d~~dlA~~~~adG 90 (221)
T PRK06512 30 KLLRAALQGGDVASVILPQYGLD---------EATFQKQAEKLVP-VIQEA--GAAALIA-------GDSRIAGRVKADG 90 (221)
T ss_pred HHHHHHHcCCCccEEEEeCCCCC---------HHHHHHHHHHHHH-HHHHh--CCEEEEe-------CHHHHHHHhCCCE
Confidence 3455667789 799999988754 2344444444333 33322 2446665 3466677899999
Q ss_pred EEEec
Q 003819 696 ITIEN 700 (793)
Q Consensus 696 isiE~ 700 (793)
+++-.
T Consensus 91 VHLg~ 95 (221)
T PRK06512 91 LHIEG 95 (221)
T ss_pred EEECc
Confidence 99963
No 141
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=45.07 E-value=1e+02 Score=32.19 Aligned_cols=125 Identities=14% Similarity=0.130 Sum_probs=66.6
Q ss_pred HHHHHHHHCCCCEE--EeeccccccCCChHHHHHHHHHHHHHHhccCCCcEEEEeccCCC------chhhHH----HHhc
Q 003819 190 EVVAELKAAGATWI--QFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADV------PAETYK----ILTS 257 (793)
Q Consensus 190 ~~l~~L~~aG~~~V--QiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~------~~~~~~----~l~~ 257 (793)
..+++..++|+..| |+..-.+. ..+..+.+.++.+...+ . .+++++..|..+. ..+.+. ...+
T Consensus 80 ~~v~~a~~~Ga~~v~~~~~~~~~~---~~~~~~~i~~v~~~~~~-~-g~~~iie~~~~g~~~~~~~~~~~i~~~~~~a~~ 154 (235)
T cd00958 80 ASVEDAVRLGADAVGVTVYVGSEE---EREMLEELARVAAEAHK-Y-GLPLIAWMYPRGPAVKNEKDPDLIAYAARIGAE 154 (235)
T ss_pred cCHHHHHHCCCCEEEEEEecCCch---HHHHHHHHHHHHHHHHH-c-CCCEEEEEeccCCcccCccCHHHHHHHHHHHHH
Confidence 35667788999987 88764322 11222233333322222 1 4678877665211 012222 2456
Q ss_pred CCCccEEEEEeccCCCChhhHhhhCCCCCEEEEEEeeCCCCCCCCHHHHHHHHHHHhhhcCCCcEEEeCC
Q 003819 258 LKGVTGFGFDLIRGTKTLDLIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVSTS 327 (793)
Q Consensus 258 lp~Vd~l~lD~~~~~~~l~~l~~~~p~~k~l~lGvVdgrn~w~ed~~~i~~~i~~~~~~v~~e~l~vsps 327 (793)
+. .|.+.+.+..+.+.++.+.+..+-. .+.+ | .+-..|.++.++.++.+.+ .|.+.+.++++
T Consensus 155 ~G-aD~Ik~~~~~~~~~~~~i~~~~~~p-vv~~----G-G~~~~~~~~~l~~~~~~~~-~Ga~gv~vg~~ 216 (235)
T cd00958 155 LG-ADIVKTKYTGDAESFKEVVEGCPVP-VVIA----G-GPKKDSEEEFLKMVYDAME-AGAAGVAVGRN 216 (235)
T ss_pred HC-CCEEEecCCCCHHHHHHHHhcCCCC-EEEe----C-CCCCCCHHHHHHHHHHHHH-cCCcEEEechh
Confidence 77 8999886544323344443323221 2222 3 3334588888888888876 57777766653
No 142
>COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair]
Probab=45.04 E-value=2e+02 Score=30.92 Aligned_cols=51 Identities=18% Similarity=0.320 Sum_probs=33.9
Q ss_pred HHHHHHHhhhcCCCcEEEeCCCCCcccccccccccCCcHHHHhHHHHHHHHHHHHH
Q 003819 307 LTTLQDLAGTVGKDKVVVSTSCSLLHTAVDLENETKLDQEIKSWLAFAAQKVVEVN 362 (793)
Q Consensus 307 ~~~i~~~~~~v~~e~l~vspsCgL~hvP~~~~~E~~l~~~~~~~lafA~qKl~El~ 362 (793)
...++++++.+|.|+|.+=|||+++. |+....-.+-|..++ ...++++|+.
T Consensus 185 a~~~~ev~~~iPldrLL~ETDsPyl~-P~p~rGkrNeP~~v~----~v~~~iAelk 235 (256)
T COG0084 185 AEKLREVARELPLDRLLLETDAPYLA-PVPYRGKRNEPAYVR----HVAEKLAELK 235 (256)
T ss_pred cHHHHHHHHhCCHhHeEeccCCCCCC-CcCCCCCCCCchHHH----HHHHHHHHHh
Confidence 34577778889999999999999984 544333333344333 3566666664
No 143
>PRK12928 lipoyl synthase; Provisional
Probab=44.77 E-value=4.5e+02 Score=28.70 Aligned_cols=140 Identities=21% Similarity=0.268 Sum_probs=77.2
Q ss_pred HHHHHHHHCCCCEEEeeccccccCCChHHHHHHHHHHHHHHhccCCCcEEEEe-ccCC-CchhhHHHHhcCCCccEEEE-
Q 003819 190 EVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIET-YFAD-VPAETYKILTSLKGVTGFGF- 266 (793)
Q Consensus 190 ~~l~~L~~aG~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~t-yfg~-~~~~~~~~l~~lp~Vd~l~l- 266 (793)
++++++.+.|+++|-|---. .-|+++...+.+.+..+.|.+..+...|-+-+ .|.+ . .+.+..+.+.. .+.+..
T Consensus 94 ~~a~~~~~~G~keivitg~~-~dDl~d~g~~~~~ell~~Ik~~~p~~~I~~ltp~~~~~~-~e~L~~l~~Ag-~~i~~hn 170 (290)
T PRK12928 94 RVAEAVAALGLRYVVLTSVA-RDDLPDGGAAHFVATIAAIRARNPGTGIEVLTPDFWGGQ-RERLATVLAAK-PDVFNHN 170 (290)
T ss_pred HHHHHHHHCCCCEEEEEEEe-CCcccccCHHHHHHHHHHHHhcCCCCEEEEeccccccCC-HHHHHHHHHcC-chhhccc
Confidence 44556777899987772211 11222222345566666665433333443222 3322 4 45666666554 444443
Q ss_pred -Eec-------cCCCCh----hhHhh--hCCCCCEEEEEEeeCCCCCCCCHHHHHHHHHHHhhhcCCCcEEEeCCC--CC
Q 003819 267 -DLI-------RGTKTL----DLIKT--EFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVSTSC--SL 330 (793)
Q Consensus 267 -D~~-------~~~~~l----~~l~~--~~p~~k~l~lGvVdgrn~w~ed~~~i~~~i~~~~~~v~~e~l~vspsC--gL 330 (793)
+-+ +...+. +.+.. ...++-.+..|+|=|- -|+.+++.+.++.+.+ ++.+.+-|.+=+ |.
T Consensus 171 lEt~~~vl~~m~r~~t~e~~le~l~~ak~~gp~i~~~s~iIvG~---GET~ed~~etl~~Lre-l~~d~v~i~~Yl~p~~ 246 (290)
T PRK12928 171 LETVPRLQKAVRRGADYQRSLDLLARAKELAPDIPTKSGLMLGL---GETEDEVIETLRDLRA-VGCDRLTIGQYLRPSL 246 (290)
T ss_pred CcCcHHHHHHhCCCCCHHHHHHHHHHHHHhCCCceecccEEEeC---CCCHHHHHHHHHHHHh-cCCCEEEEEcCCCCCc
Confidence 211 111122 22221 1323456777888885 5899999999998876 677888887643 47
Q ss_pred cccccc
Q 003819 331 LHTAVD 336 (793)
Q Consensus 331 ~hvP~~ 336 (793)
.|+|+.
T Consensus 247 ~~~~v~ 252 (290)
T PRK12928 247 AHLPVQ 252 (290)
T ss_pred cCCcee
Confidence 999986
No 144
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=44.71 E-value=1.6e+02 Score=30.06 Aligned_cols=75 Identities=23% Similarity=0.249 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHcCCcEEEEcCcccccCCCCCcccHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCchhHHHHHHcCCC
Q 003819 614 AIKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDA 693 (793)
Q Consensus 614 al~~ev~~L~~aGv~~IQIDEPal~~~l~l~~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~C~g~~~~i~~~l~~l~~ 693 (793)
.+.++++.+.++|+++||+|...... .+ +. .+.-..++.++..+. . ...+|+=++ +..+.++.+.++++
T Consensus 17 ~~~~~~~~~~~~G~~~i~l~~~d~~~-~~----~~-~~~~~~~~~i~~~~~-~--~~~v~l~v~--d~~~~i~~~~~~g~ 85 (220)
T PRK05581 17 RLGEEVKAVEAAGADWIHVDVMDGHF-VP----NL-TIGPPVVEAIRKVTK-L--PLDVHLMVE--NPDRYVPDFAKAGA 85 (220)
T ss_pred HHHHHHHHHHHcCCCEEEEeCccCCc-CC----Cc-CcCHHHHHHHHhcCC-C--cEEEEeeeC--CHHHHHHHHHHcCC
Confidence 35567888999999999998532110 00 00 011112333332222 1 122444333 33445677779999
Q ss_pred cEEEEe
Q 003819 694 DVITIE 699 (793)
Q Consensus 694 D~isiE 699 (793)
|++.+-
T Consensus 86 d~v~vh 91 (220)
T PRK05581 86 DIITFH 91 (220)
T ss_pred CEEEEe
Confidence 995554
No 145
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=44.62 E-value=2.7e+02 Score=29.46 Aligned_cols=127 Identities=7% Similarity=0.049 Sum_probs=61.9
Q ss_pred HHHHHHHCCCCEEEeeccccccCCChHHHHHHHHHHHHHHhccCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEEecc
Q 003819 191 VVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLIR 270 (793)
Q Consensus 191 ~l~~L~~aG~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~lp~Vd~l~lD~~~ 270 (793)
+.+.+.+.|+++|-+-+-.-.-......++.+++..+.+ .+++.+..-..+. ++ +..+.+.. ++++.+.-..
T Consensus 35 ~a~~~~~~G~~~i~i~dl~~~~~~~~~~~~~i~~i~~~~-----~ipv~~~GGi~s~-~~-~~~~l~~G-a~~Viigt~~ 106 (253)
T PRK02083 35 LAKRYNEEGADELVFLDITASSEGRDTMLDVVERVAEQV-----FIPLTVGGGIRSV-ED-ARRLLRAG-ADKVSINSAA 106 (253)
T ss_pred HHHHHHHcCCCEEEEEeCCcccccCcchHHHHHHHHHhC-----CCCEEeeCCCCCH-HH-HHHHHHcC-CCEEEEChhH
Confidence 344455789998877653211111122344444433322 2456666444444 44 34455577 8888776432
Q ss_pred --CCCChhhHhhhCCCCCEE-EEEEee----------CCCCCCCCHHHHHHHHHHHhhhcCCCcEEEeC
Q 003819 271 --GTKTLDLIKTEFPLGKYL-FAGVVD----------GRNIWANDLASSLTTLQDLAGTVGKDKVVVST 326 (793)
Q Consensus 271 --~~~~l~~l~~~~p~~k~l-~lGvVd----------grn~w~ed~~~i~~~i~~~~~~v~~e~l~vsp 326 (793)
++..++.+.+.+++++.+ ++.+-+ .|+.|..+-....+.++++.+ .|.+.+.+.+
T Consensus 107 l~~p~~~~ei~~~~g~~~iv~slD~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~g~~~ii~~~ 174 (253)
T PRK02083 107 VANPELISEAADRFGSQCIVVAIDAKRDPEPGRWEVYTHGGRKPTGLDAVEWAKEVEE-LGAGEILLTS 174 (253)
T ss_pred hhCcHHHHHHHHHcCCCCEEEEEEeccCCCCCCEEEEEcCCceecCCCHHHHHHHHHH-cCCCEEEEcC
Confidence 344555565557655543 443322 222222222233344455433 4667777754
No 146
>PLN02389 biotin synthase
Probab=44.53 E-value=5.3e+02 Score=29.38 Aligned_cols=147 Identities=11% Similarity=0.099 Sum_probs=78.1
Q ss_pred HHHHHHHcCCcEEEEcCcccccCCCCCcccHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCc-hhHHHHHHcCCCcEE
Q 003819 618 EVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNF-NDIIHSIMDMDADVI 696 (793)
Q Consensus 618 ev~~L~~aGv~~IQIDEPal~~~l~l~~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~C~g~~-~~i~~~l~~l~~D~i 696 (793)
+++.+.+.|++-|.|=. +++... +.+...++..+.++.+- ... +.++.+-|-. .+.+..|.+.++|.+
T Consensus 124 ~a~~~~~~G~~~~~ivt-s~rg~~-----~e~~~~e~i~eiir~ik-~~~----l~i~~s~G~l~~E~l~~LkeAGld~~ 192 (379)
T PLN02389 124 AAKRAKEAGSTRFCMGA-AWRDTV-----GRKTNFNQILEYVKEIR-GMG----MEVCCTLGMLEKEQAAQLKEAGLTAY 192 (379)
T ss_pred HHHHHHHcCCCEEEEEe-cccCCC-----CChhHHHHHHHHHHHHh-cCC----cEEEECCCCCCHHHHHHHHHcCCCEE
Confidence 45556677998766521 111111 11123466666666653 222 3355666643 478889999999987
Q ss_pred EEe--cCCC---------C-hhhHHHhhhcccCCCeEeeeeecCCCCCCCCHHHHHHHHHHHHhh------cCCCcEEEc
Q 003819 697 TIE--NSRS---------D-EKLLSVFREGVKYRAGIGPGVYDIHSPRIPSTEEIADRINKMLAV------LESNILWVN 758 (793)
Q Consensus 697 siE--~~r~---------~-~~~L~~~~~~~~~~~~i~~GVvD~~s~~ves~eev~~~i~~al~~------i~~~~l~vs 758 (793)
.+- ++++ . .+-++.++.....+-.++.|++=++ -|+.+++++.+..+.+. ++...+...
T Consensus 193 ~~~LeTs~~~y~~i~~~~s~e~rl~ti~~a~~~Gi~v~sg~IiGl---gEt~edrv~~l~~Lr~L~~~~~~v~l~~l~P~ 269 (379)
T PLN02389 193 NHNLDTSREYYPNVITTRSYDDRLETLEAVREAGISVCSGGIIGL---GEAEEDRVGLLHTLATLPEHPESVPINALVAV 269 (379)
T ss_pred EeeecCChHHhCCcCCCCCHHHHHHHHHHHHHcCCeEeEEEEECC---CCCHHHHHHHHHHHHhcccCCcEEecccceec
Confidence 754 3221 1 1123333322223446777877776 37888877777655332 223345555
Q ss_pred CCCCCCCCChhHHHHHHHHH
Q 003819 759 PDCGLKTRKYSEVKPALSNM 778 (793)
Q Consensus 759 PdCGL~t~~~~~~~~kL~~m 778 (793)
|+..|....+.....-|+.+
T Consensus 270 ~GTpL~~~~~~s~~e~lr~i 289 (379)
T PLN02389 270 KGTPLEDQKPVEIWEMVRMI 289 (379)
T ss_pred CCCcCCCCCCCCHHHHHHHH
Confidence 67777654433334444433
No 147
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=44.19 E-value=2.5e+02 Score=29.34 Aligned_cols=126 Identities=9% Similarity=0.089 Sum_probs=62.7
Q ss_pred HHHHHHHCCCCEEEeeccccccCCChHHHHHHHHHHHHHHhccCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEEec-
Q 003819 191 VVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLI- 269 (793)
Q Consensus 191 ~l~~L~~aG~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~lp~Vd~l~lD~~- 269 (793)
+++.|.++|+++|-+-+-.-.........+.+++..+.+ ..++++..-..+. ++ +..+.+.. ++++.+--.
T Consensus 32 ~a~~~~~~G~~~i~i~d~~~~~~~~~~~~~~i~~i~~~~-----~~pv~~~GGI~s~-~d-~~~~l~~G-~~~v~ig~~~ 103 (243)
T cd04731 32 LAKRYNEQGADELVFLDITASSEGRETMLDVVERVAEEV-----FIPLTVGGGIRSL-ED-ARRLLRAG-ADKVSINSAA 103 (243)
T ss_pred HHHHHHHCCCCEEEEEcCCcccccCcccHHHHHHHHHhC-----CCCEEEeCCCCCH-HH-HHHHHHcC-CceEEECchh
Confidence 455566889997766553322111122334444433322 2456665333333 44 34445566 887655432
Q ss_pred -cCCCChhhHhhhCCCCCEEEEEE-----------eeCCCCCCCCHHHHHHHHHHHhhhcCCCcEEEeC
Q 003819 270 -RGTKTLDLIKTEFPLGKYLFAGV-----------VDGRNIWANDLASSLTTLQDLAGTVGKDKVVVST 326 (793)
Q Consensus 270 -~~~~~l~~l~~~~p~~k~l~lGv-----------Vdgrn~w~ed~~~i~~~i~~~~~~v~~e~l~vsp 326 (793)
.+++-+..+.+.+++++ +++++ |-.|.-+.++..+..+.++.+.+ .|.+.+.++.
T Consensus 104 ~~~p~~~~~i~~~~~~~~-i~~~ld~k~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~-~G~d~i~v~~ 170 (243)
T cd04731 104 VENPELIREIAKRFGSQC-VVVSIDAKRRGDGGYEVYTHGGRKPTGLDAVEWAKEVEE-LGAGEILLTS 170 (243)
T ss_pred hhChHHHHHHHHHcCCCC-EEEEEEeeecCCCceEEEEcCCceecCCCHHHHHHHHHH-CCCCEEEEec
Confidence 23334444444465554 33333 22333344445555566666543 5677888865
No 148
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=44.08 E-value=3.4e+02 Score=27.07 Aligned_cols=110 Identities=17% Similarity=0.204 Sum_probs=60.6
Q ss_pred HHHHHHHHHcCCcEEEEcCcccccCCCCCcccHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCchhHHHHHHcCCCcE
Q 003819 616 KDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDADV 695 (793)
Q Consensus 616 ~~ev~~L~~aGv~~IQIDEPal~~~l~l~~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~C~g~~~~i~~~l~~l~~D~ 695 (793)
.+.+..+.+.|++.||+.++.+. ..++.+++....+.+-+. ...+.+|- -++...+.++|+
T Consensus 15 ~~~l~~~~~~gv~~v~lR~k~~~---------~~~~~~~a~~l~~~~~~~---~~~liin~-------~~~la~~~~~dG 75 (180)
T PF02581_consen 15 LEQLEAALAAGVDLVQLREKDLS---------DEELLELARRLAELCQKY---GVPLIIND-------RVDLALELGADG 75 (180)
T ss_dssp HHHHHHHHHTT-SEEEEE-SSS----------HHHHHHHHHHHHHHHHHT---TGCEEEES--------HHHHHHCT-SE
T ss_pred HHHHHHHHHCCCcEEEEcCCCCC---------ccHHHHHHHHHHHHhhcc---eEEEEecC-------CHHHHHhcCCCE
Confidence 34455677789999999998653 345556655554444322 24577873 255677899999
Q ss_pred EEEecCCCChhhHHHhhhcccCCCeEeeeeecCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEcCC
Q 003819 696 ITIENSRSDEKLLSVFREGVKYRAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLESNILWVNPD 760 (793)
Q Consensus 696 isiE~~r~~~~~L~~~~~~~~~~~~i~~GVvD~~s~~ves~eev~~~i~~al~~i~~~~l~vsPd 760 (793)
+++............. .+.+..||..+ | +.++ ++++. ..+++-+.++|=
T Consensus 76 vHl~~~~~~~~~~r~~---~~~~~~ig~S~---h-----~~~e----~~~a~-~~g~dYv~~gpv 124 (180)
T PF02581_consen 76 VHLGQSDLPPAEARKL---LGPDKIIGASC---H-----SLEE----AREAE-ELGADYVFLGPV 124 (180)
T ss_dssp EEEBTTSSSHHHHHHH---HTTTSEEEEEE---S-----SHHH----HHHHH-HCTTSEEEEETS
T ss_pred EEecccccchHHhhhh---cccceEEEeec---C-----cHHH----HHHhh-hcCCCEEEECCc
Confidence 9998643332222211 12245566554 3 3444 33332 345677778774
No 149
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=43.86 E-value=3.5e+02 Score=30.53 Aligned_cols=140 Identities=15% Similarity=0.180 Sum_probs=0.0
Q ss_pred HHHHHHHHHCCCCEEEeeccccccCCChHHHHHHHHHHHHHHhccCCCcEEEEeccCCCchhhHHHHhcCCCccEEEE--
Q 003819 189 KEVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGF-- 266 (793)
Q Consensus 189 ~~~l~~L~~aG~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~lp~Vd~l~l-- 266 (793)
.++++.|.++|+++|.+=-|.- ++++.+.++..-+.. .+..+.++.-.. .+-++...+.. ++.+++
T Consensus 25 ~~ia~~L~~~Gv~~IEvG~p~~----~~~~~e~i~~i~~~~------~~~~v~~~~r~~-~~di~~a~~~g-~~~i~i~~ 92 (363)
T TIGR02090 25 VEIARKLDELGVDVIEAGFPIA----SEGEFEAIKKISQEG------LNAEICSLARAL-KKDIDKAIDCG-VDSIHTFI 92 (363)
T ss_pred HHHHHHHHHcCCCEEEEeCCCC----ChHHHHHHHHHHhcC------CCcEEEEEcccC-HHHHHHHHHcC-cCEEEEEE
Q ss_pred -----------------EeccCCCChhhHhhhCCCCCEEEEEEeeCCCCCCCCHHHHHHHHHHHhhhcCCCcEEEeCCCC
Q 003819 267 -----------------DLIRGTKTLDLIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVSTSCS 329 (793)
Q Consensus 267 -----------------D~~~~~~~l~~l~~~~p~~k~l~lGvVdgrn~w~ed~~~i~~~i~~~~~~v~~e~l~vspsCg 329 (793)
-+..-..-++..++ .+..+.+++.|+ .+.|++.+.+.++.+.+ .|.+++.+.-..|
T Consensus 93 ~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~---~G~~v~~~~eda---~r~~~~~l~~~~~~~~~-~g~~~i~l~DT~G 165 (363)
T TIGR02090 93 ATSPIHLKYKLKKSRDEVLEKAVEAVEYAKE---HGLIVEFSAEDA---TRTDIDFLIKVFKRAEE-AGADRINIADTVG 165 (363)
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH---cCCEEEEEEeec---CCCCHHHHHHHHHHHHh-CCCCEEEEeCCCC
Q ss_pred CcccccccccccCCcHHHHhHHHHHHHHH
Q 003819 330 LLHTAVDLENETKLDQEIKSWLAFAAQKV 358 (793)
Q Consensus 330 L~hvP~~~~~E~~l~~~~~~~lafA~qKl 358 (793)
.+ .|.++...++-.++++
T Consensus 166 ~~-----------~P~~v~~li~~l~~~~ 183 (363)
T TIGR02090 166 VL-----------TPQKMEELIKKLKENV 183 (363)
T ss_pred cc-----------CHHHHHHHHHHHhccc
No 150
>cd07942 DRE_TIM_LeuA Mycobacterium tuberculosis LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Alpha-isopropylmalate synthase (LeuA), a key enzyme in leucine biosynthesis, catalyzes the first committed step in the pathway, converting acetyl-CoA and alpha-ketoisovalerate to alpha-isopropyl malate and CoA. Although the reaction catalyzed by LeuA is similar to that of the Arabidopsis thaliana IPMS1 protein, the two fall into phylogenetically distinct families within the same superfamily. LeuA has and N-terminal TIM barrel catalytic domain, a helical linker domain, and a C-terminal regulatory domain. LeuA forms a homodimer in which the linker domain of one monomer sits over the catalytic domain of the other, inserting residues into the active site that may be important for catalysis. Homologs of LeuA are found in bacteria as well as fungi. This family includes alpha-isopropylmalate synthases I (LEU4) and II (LEU9) from Saccharomyces cerevisiae. This family belong
Probab=42.75 E-value=2.3e+02 Score=30.98 Aligned_cols=75 Identities=15% Similarity=0.113 Sum_probs=40.7
Q ss_pred HHHHHHHcCCcEEEEcCcccccCCCCCcccHHHHHHHHHHHHHHHhc-CC-CCCCe--EEEEeCCCCchhHHHHHHcCCC
Q 003819 618 EVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNC-GV-QDTTQ--VHTHMCYSNFNDIIHSIMDMDA 693 (793)
Q Consensus 618 ev~~L~~aGv~~IQIDEPal~~~l~l~~~~~~~~l~~av~a~~~~~~-~v-~~~~~--I~lH~C~g~~~~i~~~l~~l~~ 693 (793)
.++.|.++|++.|.+==|+.+.. + .++++.+.+ +. ++.+. .+.+...++.+..++.....+.
T Consensus 28 ia~~L~~~Gv~~IE~gfP~~~~~--------e------~e~~~~i~~~~~~~~~~~~~al~r~~~~die~a~~~~~~~~~ 93 (284)
T cd07942 28 FFKLLVKIGFKEIEVGFPSASQT--------D------FDFVRELIEEDLIPDDVTIQVLTQAREDLIERTFEALRGAKK 93 (284)
T ss_pred HHHHHHHcCCCEEEEeCCCCCHH--------H------HHHHHHHHHccCCCCCCEEEEEcCCChhhHHHHHHHhCCCCC
Confidence 34668889999998876665521 1 123333322 22 12233 3444455555444444444555
Q ss_pred cEEEEecCCCChh
Q 003819 694 DVITIENSRSDEK 706 (793)
Q Consensus 694 D~isiE~~r~~~~ 706 (793)
+.+++-.+.|+.+
T Consensus 94 ~~v~i~~~~Sd~h 106 (284)
T cd07942 94 AIVHLYNATSPLQ 106 (284)
T ss_pred CEEEEEEcCCHHH
Confidence 5788887776544
No 151
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=41.86 E-value=2.4e+02 Score=34.22 Aligned_cols=135 Identities=16% Similarity=0.224 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHHHHHCCCCEEEeeccccccCCChHHHHHHHHHHHHHHhccCCCcEEEEeccC---------CCchhhH
Q 003819 182 DKIIPVYKEVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFA---------DVPAETY 252 (793)
Q Consensus 182 ~~L~~~Y~~~l~~L~~aG~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg---------~~~~~~~ 252 (793)
+++...|.+.++.|.++||+.|=+.- -.+-++..++.++.+... ...++++-.+. ++ .+++
T Consensus 121 ~~~~~~~~~~~~~l~~~gvD~l~~ET-----~~~~~Ea~a~~~a~~~~~----~~p~~~Sf~~~~~g~l~~G~~~-~~~~ 190 (612)
T PRK08645 121 EEIRREFREQIDALLEEGVDGLLLET-----FYDLEELLLALEAAREKT----DLPIIAQVAFHEDGVTQNGTSL-EEAL 190 (612)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEEc-----cCCHHHHHHHHHHHHHhC----CCcEEEEEEECCCCeeCCCCCH-HHHH
Confidence 78899999999999999999876651 122234444444444331 13455553332 12 4667
Q ss_pred HHHhcCCCccEEEEEeccCCCChhhHhhhCCCCCEEEEE------E---eeCCCCCCCCHHHHHHHHHHHhhhcCCCcEE
Q 003819 253 KILTSLKGVTGFGFDLIRGTKTLDLIKTEFPLGKYLFAG------V---VDGRNIWANDLASSLTTLQDLAGTVGKDKVV 323 (793)
Q Consensus 253 ~~l~~lp~Vd~l~lD~~~~~~~l~~l~~~~p~~k~l~lG------v---Vdgrn~w~ed~~~i~~~i~~~~~~v~~e~l~ 323 (793)
..+.+.+ ++++++..+.++..+..+.+.+.....+-+| . .+++..|..+++...+.+.+..+. | =-+
T Consensus 191 ~~~~~~~-~~avGiNC~~~p~~~~~~l~~l~~~~~~pl~vypNaG~~~~~~~~~~~~~~p~~~~~~~~~~~~~-G--a~i 266 (612)
T PRK08645 191 KELVAAG-ADVVGLNCGLGPYHMLEALERIPIPENAPLSAYPNAGLPEYVDGRYVYSANPEYFAEYALEFVEQ-G--VRL 266 (612)
T ss_pred HHHHhCC-CCEEEecCCCCHHHHHHHHHHHHhccCceEEEEECCCCCCCCCCccccCCCHHHHHHHHHHHHHh-C--CCE
Confidence 7777888 9999999887655555444323211112222 1 234445556676666666665542 3 223
Q ss_pred EeCCCCC
Q 003819 324 VSTSCSL 330 (793)
Q Consensus 324 vspsCgL 330 (793)
|.-=||-
T Consensus 267 iGGCCgt 273 (612)
T PRK08645 267 IGGCCGT 273 (612)
T ss_pred EeEecCC
Confidence 5556664
No 152
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=41.77 E-value=2.7e+02 Score=31.19 Aligned_cols=91 Identities=13% Similarity=0.115 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHHHcCCcEEEEcCcc---cccCC-C---CC----c---ccHHHHHHHHHHHHHHHhc-CCCCCCeEE
Q 003819 609 YQIALAIKDEVEDLEKAGITVIQIDEAA---LREGL-P---LR----K---SEQDFYLKWAVHSFRITNC-GVQDTTQVH 673 (793)
Q Consensus 609 ~~lA~al~~ev~~L~~aGv~~IQIDEPa---l~~~l-~---l~----~---~~~~~~l~~av~a~~~~~~-~v~~~~~I~ 673 (793)
.++...+.+-.+.++++|++.|+|.--- |...| | .+ . .+...++...+++.+.++. .++++..|.
T Consensus 140 ~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGslenR~r~~~eii~~vr~~vg~~~~~~~~v~ 219 (353)
T cd04735 140 EDIIDAFGEATRRAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQEVIDKHADKDFILG 219 (353)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCCCcccCCcHHHHHHHHHHHHHHHHHHhccccCCCceEE
Confidence 5667777777788888999999998521 11111 1 11 0 1223344455666665542 112445677
Q ss_pred EEeCCCC----------chhHHHHHHcCCCcEEEEe
Q 003819 674 THMCYSN----------FNDIIHSIMDMDADVITIE 699 (793)
Q Consensus 674 lH~C~g~----------~~~i~~~l~~l~~D~isiE 699 (793)
+.+...+ .-++++.+.+.++|.|++-
T Consensus 220 ~R~s~~~~~~~g~~~ee~~~i~~~L~~~GvD~I~Vs 255 (353)
T cd04735 220 YRFSPEEPEEPGIRMEDTLALVDKLADKGLDYLHIS 255 (353)
T ss_pred EEECcccccCCCCCHHHHHHHHHHHHHcCCCEEEec
Confidence 7776433 2356677788899999985
No 153
>KOG3338 consensus Divalent cation tolerance-related protein [Inorganic ion transport and metabolism]
Probab=41.64 E-value=20 Score=34.21 Aligned_cols=90 Identities=24% Similarity=0.328 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHHHHHcCCcccCCCCcccchhhhhhHhhhCCCCCcccCCCCccccchhhhhccCCCCCCccccceecc
Q 003819 35 QNVAADLRASIWNQMADAGIKFIPSNTFSYYDQVLDTTAMLGAVPPRYSWNGGEIGFDVYFSMARGNASVPAMEMTKWFD 114 (793)
Q Consensus 35 ~~~~~~~~~~~~~~Q~~aGld~ItdGefs~yD~vLD~~~~~g~ip~R~~~~~~~~~l~~yFa~arG~~~~~a~~mtKwFd 114 (793)
++.++++-...++.-.+|=..+||.=+ |-|.| =|.|-+ -..|+-|.+-..+. --.+||+-+
T Consensus 55 rE~a~~~arsiV~~rLAACvNiIpeIt-SIY~W-------kgkI~e----------dsE~ll~iKtrsSl-~~~Lt~fV~ 115 (153)
T KOG3338|consen 55 REVAKELARSIVEERLAACVNIIPEIT-SIYEW-------KGKIVE----------DSEYLLIIKTRSSL-HWPLTKFVR 115 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccce-ehhhh-------hccccc----------chhHHHHHHHhhhh-hhhHHHHHh
Confidence 345556666666666667677776544 44433 122211 12466666432222 237899999
Q ss_pred cCceeecceecCCCccccCCchhHHHHHHH
Q 003819 115 TNYHYIVPELGPDVNFSYASHKAVQEYKEA 144 (793)
Q Consensus 115 tNYhY~vPe~~~~~~~~l~~~~~~~e~~~a 144 (793)
.|..|-|||+.+ .++.+.+.++++..+..
T Consensus 116 ~nHpYeVpEVia-lpi~~gs~~YLeW~~q~ 144 (153)
T KOG3338|consen 116 GNHPYEVPEVIA-LPIHLGSRPYLEWMNQC 144 (153)
T ss_pred cCCCccchhhee-eccccCCcHHHHHHHHh
Confidence 999999999987 57777778888776544
No 154
>PRK08508 biotin synthase; Provisional
Probab=41.34 E-value=4.9e+02 Score=28.10 Aligned_cols=124 Identities=12% Similarity=0.092 Sum_probs=68.0
Q ss_pred HHHHHHHcCCcEEEE--cCcccccCCCCCcccHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCc-hhHHHHHHcCCCc
Q 003819 618 EVEDLEKAGITVIQI--DEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNF-NDIIHSIMDMDAD 694 (793)
Q Consensus 618 ev~~L~~aGv~~IQI--DEPal~~~l~l~~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~C~g~~-~~i~~~l~~l~~D 694 (793)
+++...+.|+.-+.+ ..+.+.+ ..+++..+.++.+-+..+ .+++|.|.|.. .+.+..|.+.++|
T Consensus 48 ~a~~a~~~g~~~~~lv~sg~~~~~----------~~~e~~~ei~~~ik~~~p---~l~i~~s~G~~~~e~l~~Lk~aGld 114 (279)
T PRK08508 48 EAKMAKANGALGFCLVTSGRGLDD----------KKLEYVAEAAKAVKKEVP---GLHLIACNGTASVEQLKELKKAGIF 114 (279)
T ss_pred HHHHHHHCCCCEEEEEeccCCCCc----------ccHHHHHHHHHHHHhhCC---CcEEEecCCCCCHHHHHHHHHcCCC
Confidence 344455668875544 3332211 123455555555433322 36778787753 5788889999999
Q ss_pred EEEEe--cCCC-------C---hhhHHHhhhcccCCCeEeeeeecCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEc
Q 003819 695 VITIE--NSRS-------D---EKLLSVFREGVKYRAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLESNILWVN 758 (793)
Q Consensus 695 ~isiE--~~r~-------~---~~~L~~~~~~~~~~~~i~~GVvD~~s~~ves~eev~~~i~~al~~i~~~~l~vs 758 (793)
.+.+. +++. . .+-++.++.....+-.+.-|++-++ -|+.|++++.+..+.+ ++++-+-++
T Consensus 115 ~~~~~lEt~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~sg~I~Gl---GEt~ed~~~~l~~lr~-L~~~svpl~ 186 (279)
T PRK08508 115 SYNHNLETSKEFFPKICTTHTWEERFQTCENAKEAGLGLCSGGIFGL---GESWEDRISFLKSLAS-LSPHSTPIN 186 (279)
T ss_pred EEcccccchHHHhcCCCCCCCHHHHHHHHHHHHHcCCeecceeEEec---CCCHHHHHHHHHHHHc-CCCCEEeeC
Confidence 98864 3221 1 1222222221122334555555553 4899999999988754 666645444
No 155
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=40.97 E-value=70 Score=35.04 Aligned_cols=62 Identities=15% Similarity=0.178 Sum_probs=39.8
Q ss_pred HHHHHHHHcCCcEEEEcCcccccCCCCCcccHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCchhHHHHHHcCCCcEE
Q 003819 617 DEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDADVI 696 (793)
Q Consensus 617 ~ev~~L~~aGv~~IQIDEPal~~~l~l~~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~C~g~~~~i~~~l~~l~~D~i 696 (793)
+|+.+..++|+++||+|..... -+..+++.. +. ++.+-...|=-.+.+...+.+++|+|
T Consensus 208 eea~~a~~agaDiImLDnmspe------------~l~~av~~~-------~~--~~~leaSGGI~~~ni~~yA~tGVD~I 266 (290)
T PRK06559 208 AAAEEAAAAGADIIMLDNMSLE------------QIEQAITLI-------AG--RSRIECSGNIDMTTISRFRGLAIDYV 266 (290)
T ss_pred HHHHHHHHcCCCEEEECCCCHH------------HHHHHHHHh-------cC--ceEEEEECCCCHHHHHHHHhcCCCEE
Confidence 4566667899999999974422 122333322 11 34455553433467888999999999
Q ss_pred EEe
Q 003819 697 TIE 699 (793)
Q Consensus 697 siE 699 (793)
|.=
T Consensus 267 s~g 269 (290)
T PRK06559 267 SSG 269 (290)
T ss_pred EeC
Confidence 986
No 156
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=40.94 E-value=4.9e+02 Score=28.03 Aligned_cols=150 Identities=11% Similarity=0.095 Sum_probs=84.1
Q ss_pred HHHHHHHcCCcEEEEcCcccccC-CCCCcccHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCC------------chhH
Q 003819 618 EVEDLEKAGITVIQIDEAALREG-LPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSN------------FNDI 684 (793)
Q Consensus 618 ev~~L~~aGv~~IQIDEPal~~~-l~l~~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~C~g~------------~~~i 684 (793)
.+..|.++|+++|.+=-|+.-.. .-....++.++ ++.++. ..+ ++++..+ |.+. ....
T Consensus 26 ia~~L~~~Gv~~iE~G~~a~~~~~~~~~~~~~~e~----i~~~~~---~~~-~~~l~~~-~r~~~~~~~~~~p~~~~~~d 96 (275)
T cd07937 26 IAEALDEAGFFSLEVWGGATFDVCMRFLNEDPWER----LRELRK---AMP-NTPLQML-LRGQNLVGYRHYPDDVVELF 96 (275)
T ss_pred HHHHHHHcCCCEEEccCCcchhhhccccCCCHHHH----HHHHHH---hCC-CCceehh-cccccccCccCCCcHHHHHH
Confidence 36778899999999888873110 00011222222 222322 222 2445444 3331 2455
Q ss_pred HHHHHcCCCcEEEEecCCCChhhHH-HhhhcccCCCeEeeeeecCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEcCCCCC
Q 003819 685 IHSIMDMDADVITIENSRSDEKLLS-VFREGVKYRAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLESNILWVNPDCGL 763 (793)
Q Consensus 685 ~~~l~~l~~D~isiE~~r~~~~~L~-~~~~~~~~~~~i~~GVvD~~s~~ves~eev~~~i~~al~~i~~~~l~vsPdCGL 763 (793)
++...+.++|.+.+-...++.+.+. .++.....+..+.+++--..+ -.-+++.+.+.++++.+ .|++++.+.-..|.
T Consensus 97 i~~~~~~g~~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~i~~~~~-~~~~~~~~~~~~~~~~~-~Ga~~i~l~DT~G~ 174 (275)
T cd07937 97 VEKAAKNGIDIFRIFDALNDVRNLEVAIKAVKKAGKHVEGAICYTGS-PVHTLEYYVKLAKELED-MGADSICIKDMAGL 174 (275)
T ss_pred HHHHHHcCCCEEEEeecCChHHHHHHHHHHHHHCCCeEEEEEEecCC-CCCCHHHHHHHHHHHHH-cCCCEEEEcCCCCC
Confidence 6677788999999876655544333 222111123444444421222 23588999888888876 58999999988888
Q ss_pred CCCChhHHHHHHHHHHH
Q 003819 764 KTRKYSEVKPALSNMVA 780 (793)
Q Consensus 764 ~t~~~~~~~~kL~~mv~ 780 (793)
. +|+++..-++.+.+
T Consensus 175 ~--~P~~v~~lv~~l~~ 189 (275)
T cd07937 175 L--TPYAAYELVKALKK 189 (275)
T ss_pred C--CHHHHHHHHHHHHH
Confidence 6 46555555444443
No 157
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=40.45 E-value=5.3e+02 Score=28.21 Aligned_cols=149 Identities=12% Similarity=0.133 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHcCCcEEEEcCcccccCC---CCC---c-ccHHHHHHHHHHHHHHHhcC-CCCCCeEEEEe-----CCCC
Q 003819 614 AIKDEVEDLEKAGITVIQIDEAALREGL---PLR---K-SEQDFYLKWAVHSFRITNCG-VQDTTQVHTHM-----CYSN 680 (793)
Q Consensus 614 al~~ev~~L~~aGv~~IQIDEPal~~~l---~l~---~-~~~~~~l~~av~a~~~~~~~-v~~~~~I~lH~-----C~g~ 680 (793)
.+++-++.++++|+.-|+|.+-....-+ ... . .+.+ ..++-++.+.+. ..++..|.-.+ +.|
T Consensus 93 ~v~r~V~~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~e----e~~~kI~Aa~~a~~~~~~~IiARTDa~~~~~~- 167 (285)
T TIGR02320 93 HFRRLVRKLERRGVSAVCIEDKLGLKKNSLFGNDVAQPQASVE----EFCGKIRAGKDAQTTEDFMIIARVESLILGKG- 167 (285)
T ss_pred HHHHHHHHHHHcCCeEEEEeccCCCccccccCCCCcccccCHH----HHHHHHHHHHHhccCCCeEEEEecccccccCC-
Confidence 4456678888999999999764321100 000 0 0122 223333333332 12334444442 222
Q ss_pred chhHHHH---HHcCCCcEEEEec-CCCChhhHHHhhhcccC---CCeEeeeeecCCCCCCCCHHHHHHHHHHHHhhcCCC
Q 003819 681 FNDIIHS---IMDMDADVITIEN-SRSDEKLLSVFREGVKY---RAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLESN 753 (793)
Q Consensus 681 ~~~i~~~---l~~l~~D~isiE~-~r~~~~~L~~~~~~~~~---~~~i~~GVvD~~s~~ves~eev~~~i~~al~~i~~~ 753 (793)
+++.+.. ..+.++|++.++. ..+ .+.+..+.+.... +..+. ++.+..+. .+.+++ ..+|..
T Consensus 168 ~~eAi~Ra~ay~eAGAD~ifv~~~~~~-~~ei~~~~~~~~~~~p~~pl~--~~~~~~~~-~~~~eL--------~~lG~~ 235 (285)
T TIGR02320 168 MEDALKRAEAYAEAGADGIMIHSRKKD-PDEILEFARRFRNHYPRTPLV--IVPTSYYT-TPTDEF--------RDAGIS 235 (285)
T ss_pred HHHHHHHHHHHHHcCCCEEEecCCCCC-HHHHHHHHHHhhhhCCCCCEE--EecCCCCC-CCHHHH--------HHcCCC
Confidence 5555554 4589999999995 343 3334333321221 11232 22222222 355554 456777
Q ss_pred cEEEcCCCCCCCCChhHHHHHHHHHHHHHHHHHHH
Q 003819 754 ILWVNPDCGLKTRKYSEVKPALSNMVAAAKLLRTQ 788 (793)
Q Consensus 754 ~l~vsPdCGL~t~~~~~~~~kL~~mv~aa~~~r~~ 788 (793)
++...+. -.+.+++.|.++++.+.+.
T Consensus 236 ~v~~~~~---------~~~aa~~a~~~~~~~~~~~ 261 (285)
T TIGR02320 236 VVIYANH---------LLRAAYAAMQQVAERILEH 261 (285)
T ss_pred EEEEhHH---------HHHHHHHHHHHHHHHHHHc
Confidence 7665332 3368888898888888653
No 158
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=40.32 E-value=6e+02 Score=28.81 Aligned_cols=141 Identities=11% Similarity=0.042 Sum_probs=83.4
Q ss_pred HHHHHHHHcCCcEEEEcCcccccCCCCCcccHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCchhHHHHHHcCCCcEE
Q 003819 617 DEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDADVI 696 (793)
Q Consensus 617 ~ev~~L~~aGv~~IQIDEPal~~~l~l~~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~C~g~~~~i~~~l~~l~~D~i 696 (793)
+.++.|.++|++.|.+=-|+..+. ++ +.++.+.+.. ....+.++ |.... .-++...+.+++.+
T Consensus 30 ~ia~~L~~~GV~~IE~G~p~~~~~------~~--------e~i~~i~~~~-~~~~i~~~-~r~~~-~di~~a~~~g~~~i 92 (378)
T PRK11858 30 AIARMLDEIGVDQIEAGFPAVSED------EK--------EAIKAIAKLG-LNASILAL-NRAVK-SDIDASIDCGVDAV 92 (378)
T ss_pred HHHHHHHHhCCCEEEEeCCCcChH------HH--------HHHHHHHhcC-CCeEEEEE-cccCH-HHHHHHHhCCcCEE
Confidence 345668889999999876665421 11 1223332211 12455554 54443 34677788899998
Q ss_pred EEecCCCCh-----------hhHHH----hhhcccCCCeEeeeeecCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEcCCC
Q 003819 697 TIENSRSDE-----------KLLSV----FREGVKYRAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLESNILWVNPDC 761 (793)
Q Consensus 697 siE~~r~~~-----------~~L~~----~~~~~~~~~~i~~GVvD~~s~~ves~eev~~~i~~al~~i~~~~l~vsPdC 761 (793)
.+=.+.|+. +.++. ++.....+..+.++.-|.. ..+++.+.+.++.+.+ .|++++.+.-..
T Consensus 93 ~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~ed~~---r~~~~~l~~~~~~~~~-~Ga~~I~l~DT~ 168 (378)
T PRK11858 93 HIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFSAEDAS---RTDLDFLIEFAKAAEE-AGADRVRFCDTV 168 (378)
T ss_pred EEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEeccCC---CCCHHHHHHHHHHHHh-CCCCEEEEeccC
Confidence 887555432 22221 1110113445777766543 2478888888888866 588988888777
Q ss_pred CCCCCChhHHHHHHHHHHH
Q 003819 762 GLKTRKYSEVKPALSNMVA 780 (793)
Q Consensus 762 GL~t~~~~~~~~kL~~mv~ 780 (793)
|.. +|.++..-++.+.+
T Consensus 169 G~~--~P~~v~~lv~~l~~ 185 (378)
T PRK11858 169 GIL--DPFTMYELVKELVE 185 (378)
T ss_pred CCC--CHHHHHHHHHHHHH
Confidence 764 67666665555544
No 159
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=39.97 E-value=68 Score=32.89 Aligned_cols=71 Identities=18% Similarity=0.186 Sum_probs=38.2
Q ss_pred HHHHHHHHHHCCCCEEEeec---cccccCCChHHHHHHHHHHHHHHhccC-CCcEEEEeccCCCchhhHHHHhcCCCccE
Q 003819 188 YKEVVAELKAAGATWIQFDE---PTLVLDLDSHKLQAFSDAYSELQSSLS-GLNVLIETYFADVPAETYKILTSLKGVTG 263 (793)
Q Consensus 188 Y~~~l~~L~~aG~~~VQiDE---P~L~~d~~~~~~~~~~~~y~~l~~~~~-~~~i~l~tyfg~~~~~~~~~l~~lp~Vd~ 263 (793)
+.+.++.+.++|+++||+|. +... ... -..+. .+.+.+..+ ...+.|-+| + . ...++.+.+.. +|+
T Consensus 18 ~~~~~~~~~~~G~~~i~l~~~d~~~~~-~~~-~~~~~----~~~i~~~~~~~~~v~l~v~-d-~-~~~i~~~~~~g-~d~ 87 (220)
T PRK05581 18 LGEEVKAVEAAGADWIHVDVMDGHFVP-NLT-IGPPV----VEAIRKVTKLPLDVHLMVE-N-P-DRYVPDFAKAG-ADI 87 (220)
T ss_pred HHHHHHHHHHcCCCEEEEeCccCCcCC-CcC-cCHHH----HHHHHhcCCCcEEEEeeeC-C-H-HHHHHHHHHcC-CCE
Confidence 55678889999999999985 3211 100 01122 222222111 123445555 3 2 33456667888 999
Q ss_pred --EEEEe
Q 003819 264 --FGFDL 268 (793)
Q Consensus 264 --l~lD~ 268 (793)
+|.+-
T Consensus 88 v~vh~~~ 94 (220)
T PRK05581 88 ITFHVEA 94 (220)
T ss_pred EEEeecc
Confidence 66653
No 160
>PRK15108 biotin synthase; Provisional
Probab=39.66 E-value=3.8e+02 Score=30.01 Aligned_cols=114 Identities=14% Similarity=0.149 Sum_probs=66.4
Q ss_pred HHHHHHHCCCCEEEeeccccc-cCCChHHHHHHHHHHHHHHhccCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEEec
Q 003819 191 VVAELKAAGATWIQFDEPTLV-LDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLI 269 (793)
Q Consensus 191 ~l~~L~~aG~~~VQiDEP~L~-~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~lp~Vd~l~lD~~ 269 (793)
..+...+.|++-|-+= .+ .+.+..+.+.+.+++..+.+. .+.++ .+.|.++.+.+..|.+.. +|.+++++.
T Consensus 84 ~a~~~~~~G~~~i~i~---~~g~~p~~~~~e~i~~~i~~ik~~--~i~v~--~s~G~ls~e~l~~LkeAG-ld~~n~~le 155 (345)
T PRK15108 84 SARKAKAAGSTRFCMG---AAWKNPHERDMPYLEQMVQGVKAM--GLETC--MTLGTLSESQAQRLANAG-LDYYNHNLD 155 (345)
T ss_pred HHHHHHHcCCCEEEEE---ecCCCCCcchHHHHHHHHHHHHhC--CCEEE--EeCCcCCHHHHHHHHHcC-CCEEeeccc
Confidence 3345567898865221 00 122233566677777777532 24443 345655467788999998 999999887
Q ss_pred cCC---------CChhhHhh----hCCCCCEEEEEEeeCCCCCCCCHHHHHHHHHHHhh
Q 003819 270 RGT---------KTLDLIKT----EFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAG 315 (793)
Q Consensus 270 ~~~---------~~l~~l~~----~~p~~k~l~lGvVdgrn~w~ed~~~i~~~i~~~~~ 315 (793)
..+ .+++...+ ....+..+..|+|=|- -|+.++.++.+..+.+
T Consensus 156 T~p~~f~~I~~~~~~~~rl~~i~~a~~~G~~v~sg~i~Gl---gEt~ed~v~~~~~l~~ 211 (345)
T PRK15108 156 TSPEFYGNIITTRTYQERLDTLEKVRDAGIKVCSGGIVGL---GETVKDRAGLLLQLAN 211 (345)
T ss_pred cChHhcCCCCCCCCHHHHHHHHHHHHHcCCceeeEEEEeC---CCCHHHHHHHHHHHHh
Confidence 532 23333222 1123557788888886 4566666666666654
No 161
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=39.30 E-value=1.3e+02 Score=32.71 Aligned_cols=69 Identities=19% Similarity=0.198 Sum_probs=41.7
Q ss_pred HHHHHHHHCCCCEEEeeccccccCCChHHHHHHHHHHHHHHhccCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEEec
Q 003819 190 EVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLI 269 (793)
Q Consensus 190 ~~l~~L~~aG~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~lp~Vd~l~lD~~ 269 (793)
+++.+..++|++.||+|-. +. +.++++...+.....++++.+--- |++..++++.+.++. ||.|..=..
T Consensus 193 eea~~a~~agaDiI~LDn~------~~---e~l~~~v~~l~~~~~~~~~~leaS-GGI~~~ni~~yA~tG-vD~Is~gal 261 (278)
T PRK08385 193 EDALKAAKAGADIIMLDNM------TP---EEIREVIEALKREGLRERVKIEVS-GGITPENIEEYAKLD-VDVISLGAL 261 (278)
T ss_pred HHHHHHHHcCcCEEEECCC------CH---HHHHHHHHHHHhcCcCCCEEEEEE-CCCCHHHHHHHHHcC-CCEEEeChh
Confidence 3445566899999999954 33 334444444433210133433322 667457888899998 999887543
No 162
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=39.22 E-value=78 Score=34.73 Aligned_cols=62 Identities=16% Similarity=0.193 Sum_probs=38.8
Q ss_pred HHHHHHHHcCCcEEEEcCcccccCCCCCcccHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCchhHHHHHHcCCCcEE
Q 003819 617 DEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDADVI 696 (793)
Q Consensus 617 ~ev~~L~~aGv~~IQIDEPal~~~l~l~~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~C~g~~~~i~~~l~~l~~D~i 696 (793)
+|+.+..++|+++||+|....- + +..++... +. ++.+-...|=-.+.+..++.+++|+|
T Consensus 216 eea~eA~~aGaDiImLDnmspe-----------~-l~~av~~~-------~~--~~~lEaSGGIt~~ni~~yA~tGVD~I 274 (294)
T PRK06978 216 AQLETALAHGAQSVLLDNFTLD-----------M-MREAVRVT-------AG--RAVLEVSGGVNFDTVRAFAETGVDRI 274 (294)
T ss_pred HHHHHHHHcCCCEEEECCCCHH-----------H-HHHHHHhh-------cC--CeEEEEECCCCHHHHHHHHhcCCCEE
Confidence 3455566899999999974321 1 22233322 21 34455553333467888999999999
Q ss_pred EEe
Q 003819 697 TIE 699 (793)
Q Consensus 697 siE 699 (793)
|.=
T Consensus 275 S~g 277 (294)
T PRK06978 275 SIG 277 (294)
T ss_pred EeC
Confidence 986
No 163
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=38.53 E-value=5.3e+02 Score=27.73 Aligned_cols=146 Identities=16% Similarity=0.175 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHHHHHHcCCcEEEEcC----cccccCCCCCcccHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCchh
Q 003819 608 CYQIALAIKDEVEDLEKAGITVIQIDE----AALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFND 683 (793)
Q Consensus 608 ~~~lA~al~~ev~~L~~aGv~~IQIDE----Pal~~~l~l~~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~C~g~~~~ 683 (793)
..++.+...+|++.|++.|++-|.|.. |.... . . ...-..+...+...+..+ ++ .+++.+=+.+-..
T Consensus 24 ~~~iie~A~~ea~~l~~~GvDgiiveN~~D~Py~~~-~--~-~etvaaM~~i~~~v~~~~-~~----p~GVnvL~nd~~a 94 (254)
T PF03437_consen 24 MEEIIERAVREAEALEEGGVDGIIVENMGDVPYPKR-V--G-PETVAAMARIAREVRREV-SV----PVGVNVLRNDPKA 94 (254)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEecCCCCCccCC-C--C-HHHHHHHHHHHHHHHHhC-CC----CEEeeeecCCCHH
Confidence 456677788999999999999888764 33222 1 1 111122333344444433 23 4666655533333
Q ss_pred HHHHHHcCCCcEEEEec-C---CCC--------hhhHHHhhhcccCCCeEeeeeecCCCCCCCCHHHHHHHHHHHHhhcC
Q 003819 684 IIHSIMDMDADVITIEN-S---RSD--------EKLLSVFREGVKYRAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLE 751 (793)
Q Consensus 684 i~~~l~~l~~D~isiE~-~---r~~--------~~~L~~~~~~~~~~~~i~~GVvD~~s~~ves~eev~~~i~~al~~i~ 751 (793)
-+..-...++|-+=++. + -++ .+.++ .++..+.+-.|..+|-.-|+..+.+. .+.+.++.+.+...
T Consensus 95 alaiA~A~ga~FIRv~~~~g~~~~d~G~~~~~a~e~~r-~R~~l~a~v~ilaDV~~kh~~~l~~~-~~~~~~~~a~~~~~ 172 (254)
T PF03437_consen 95 ALAIAAATGADFIRVNVFVGAYVTDEGIIEGCAGELLR-YRKRLGADVKILADVHVKHSSPLATR-DLEEAAKDAVERGG 172 (254)
T ss_pred HHHHHHHhCCCEEEecCEEceecccCccccccHHHHHH-HHHHcCCCeEEEeeechhhcccCCCC-CHHHHHHHHHHhcC
Confidence 44445567777777662 1 111 12222 22213344457777777788776542 13344556666667
Q ss_pred CCcEEEc-CCCCCC
Q 003819 752 SNILWVN-PDCGLK 764 (793)
Q Consensus 752 ~~~l~vs-PdCGL~ 764 (793)
++=++|+ +.+|-.
T Consensus 173 aDaviVtG~~TG~~ 186 (254)
T PF03437_consen 173 ADAVIVTGKATGEP 186 (254)
T ss_pred CCEEEECCcccCCC
Confidence 7888876 445554
No 164
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=38.21 E-value=1.1e+02 Score=31.49 Aligned_cols=143 Identities=15% Similarity=0.163 Sum_probs=71.2
Q ss_pred HHHHHHHHHHCCCCEEEeec--cccccCC--ChHHHHHHHHHHHHHHhccCCCcEEEEeccCCCchhhHHHHhcCCCccE
Q 003819 188 YKEVVAELKAAGATWIQFDE--PTLVLDL--DSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTG 263 (793)
Q Consensus 188 Y~~~l~~L~~aG~~~VQiDE--P~L~~d~--~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~lp~Vd~ 263 (793)
+.+++++|.++|++|+.+|= -.++-+. ..+.++. +.+. ++..+-+|-...+. ...++.+.+.. +|.
T Consensus 14 l~~~i~~l~~~g~d~lHiDiMDg~fvpn~~~g~~~i~~-------i~~~-~~~~~DvHLMv~~P-~~~i~~~~~~g-~~~ 83 (201)
T PF00834_consen 14 LEEEIKRLEEAGADWLHIDIMDGHFVPNLTFGPDIIKA-------IRKI-TDLPLDVHLMVENP-ERYIEEFAEAG-ADY 83 (201)
T ss_dssp HHHHHHHHHHTT-SEEEEEEEBSSSSSSB-B-HHHHHH-------HHTT-SSSEEEEEEESSSG-GGHHHHHHHHT--SE
T ss_pred HHHHHHHHHHcCCCEEEEeecccccCCcccCCHHHHHH-------Hhhc-CCCcEEEEeeeccH-HHHHHHHHhcC-CCE
Confidence 56789999999999999992 1111111 1222333 3222 12334444444444 56788888887 887
Q ss_pred EEEEeccCCCChhhHhhhCC-CCCEEEEEEeeCCCCCCCCHHHHHHHHHHHhhhcCCCc-EEEeCCCCCccccccccccc
Q 003819 264 FGFDLIRGTKTLDLIKTEFP-LGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDK-VVVSTSCSLLHTAVDLENET 341 (793)
Q Consensus 264 l~lD~~~~~~~l~~l~~~~p-~~k~l~lGvVdgrn~w~ed~~~i~~~i~~~~~~v~~e~-l~vspsCgL~hvP~~~~~E~ 341 (793)
+.+=+.... ++..+.+.+. .+...++.+ |+. ++++ .+++.+..+ |. +..+-+=|+.-=++
T Consensus 84 i~~H~E~~~-~~~~~i~~ik~~g~k~Gial----nP~-T~~~----~~~~~l~~v--D~VlvMsV~PG~~Gq~f------ 145 (201)
T PF00834_consen 84 ITFHAEATE-DPKETIKYIKEAGIKAGIAL----NPE-TPVE----ELEPYLDQV--DMVLVMSVEPGFGGQKF------ 145 (201)
T ss_dssp EEEEGGGTT-THHHHHHHHHHTTSEEEEEE-----TT-S-GG----GGTTTGCCS--SEEEEESS-TTTSSB--------
T ss_pred EEEcccchh-CHHHHHHHHHHhCCCEEEEE----ECC-CCch----HHHHHhhhc--CEEEEEEecCCCCcccc------
Confidence 777665432 2222222121 345555554 221 1222 233344433 45 33344445443222
Q ss_pred CCcHHHHhHHHHHHHHHHHHHHHHHH
Q 003819 342 KLDQEIKSWLAFAAQKVVEVNALAKA 367 (793)
Q Consensus 342 ~l~~~~~~~lafA~qKl~El~~l~~~ 367 (793)
...+.+|+++++.+...
T Consensus 146 ---------~~~~~~KI~~l~~~~~~ 162 (201)
T PF00834_consen 146 ---------IPEVLEKIRELRKLIPE 162 (201)
T ss_dssp ---------HGGHHHHHHHHHHHHHH
T ss_pred ---------cHHHHHHHHHHHHHHHh
Confidence 23488999999988765
No 165
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=38.17 E-value=1e+02 Score=33.60 Aligned_cols=80 Identities=25% Similarity=0.316 Sum_probs=51.5
Q ss_pred CCEEEeeccccccCCCh-HHHHHHHHHHHHHHhccCCCcEEEEec-cCCCchhhHHHHhcCCCccEEEEEecc--CCCCh
Q 003819 200 ATWIQFDEPTLVLDLDS-HKLQAFSDAYSELQSSLSGLNVLIETY-FADVPAETYKILTSLKGVTGFGFDLIR--GTKTL 275 (793)
Q Consensus 200 ~~~VQiDEP~L~~d~~~-~~~~~~~~~y~~l~~~~~~~~i~l~ty-fg~~~~~~~~~l~~lp~Vd~l~lD~~~--~~~~l 275 (793)
-+.+-+|||.+.+|... +.+-.|-+.|+.-.+ ..|+++|+ |+++ ..++ =..+++|--. -.+++
T Consensus 175 p~VLfLDEpTvgLDV~aq~~ir~Flke~n~~~~----aTVllTTH~~~di--------~~lc-~rv~~I~~Gqlv~dg~l 241 (325)
T COG4586 175 PKVLFLDEPTVGLDVNAQANIREFLKEYNEERQ----ATVLLTTHIFDDI--------ATLC-DRVLLIDQGQLVFDGTL 241 (325)
T ss_pred CcEEEecCCccCcchhHHHHHHHHHHHHHHhhC----ceEEEEecchhhH--------HHhh-hheEEeeCCcEeecccH
Confidence 46899999999998754 234444444544432 57888885 4444 2334 4457777543 13678
Q ss_pred hhHhhhCCCCCEEEEEE
Q 003819 276 DLIKTEFPLGKYLFAGV 292 (793)
Q Consensus 276 ~~l~~~~p~~k~l~lGv 292 (793)
+.+...|.+.|.+++=+
T Consensus 242 ~~l~~~f~~~k~~~~el 258 (325)
T COG4586 242 AQLQEQFGPYKEFSVEL 258 (325)
T ss_pred HHHHHHhCCceEEEEEE
Confidence 88887787788887765
No 166
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=38.10 E-value=90 Score=34.28 Aligned_cols=62 Identities=18% Similarity=0.261 Sum_probs=39.6
Q ss_pred HHHHHHHHcCCcEEEEcCcccccCCCCCcccHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCchhHHHHHHcCCCcEE
Q 003819 617 DEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDADVI 696 (793)
Q Consensus 617 ~ev~~L~~aGv~~IQIDEPal~~~l~l~~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~C~g~~~~i~~~l~~l~~D~i 696 (793)
+|+.+..++|+++||+|..... -+..+++.. ++ ++.+-...|=-.+.+..++.+++|+|
T Consensus 219 eea~ea~~~gaDiI~LDn~s~e------------~~~~av~~~-------~~--~~~ieaSGGI~~~ni~~yA~tGVD~I 277 (296)
T PRK09016 219 DELDQALKAGADIIMLDNFTTE------------QMREAVKRT-------NG--RALLEVSGNVTLETLREFAETGVDFI 277 (296)
T ss_pred HHHHHHHHcCCCEEEeCCCChH------------HHHHHHHhh-------cC--CeEEEEECCCCHHHHHHHHhcCCCEE
Confidence 4566667799999999986532 122333321 21 34455553323367888999999999
Q ss_pred EEe
Q 003819 697 TIE 699 (793)
Q Consensus 697 siE 699 (793)
|+=
T Consensus 278 s~g 280 (296)
T PRK09016 278 SVG 280 (296)
T ss_pred EeC
Confidence 986
No 167
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=37.86 E-value=3.6e+02 Score=28.78 Aligned_cols=107 Identities=20% Similarity=0.210 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHcCCcEEEEcCcccccCCCCCcccHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCchhHHH---HHH
Q 003819 613 LAIKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIH---SIM 689 (793)
Q Consensus 613 ~al~~ev~~L~~aGv~~IQIDEPal~~~l~l~~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~C~g~~~~i~~---~l~ 689 (793)
+++++.++.|.+.|++-|-+-- ...|...+..++..+.++.++++ +++.+.|.+|++..+..+.++ ...
T Consensus 18 ~~~~~~i~~l~~~Gv~gi~~~G-stGE~~~ls~~Er~~l~~~~~~~-------~~~~~~vi~gv~~~~~~~~i~~a~~a~ 89 (281)
T cd00408 18 DALRRLVEFLIEAGVDGLVVLG-TTGEAPTLTDEERKEVIEAVVEA-------VAGRVPVIAGVGANSTREAIELARHAE 89 (281)
T ss_pred HHHHHHHHHHHHcCCCEEEECC-CCcccccCCHHHHHHHHHHHHHH-------hCCCCeEEEecCCccHHHHHHHHHHHH
Confidence 4778888899999999776553 22333333322333333333332 223467889988666655554 456
Q ss_pred cCCCcEEEEecC----CCChhhHHHhhhcccCCCeEeeeeecC
Q 003819 690 DMDADVITIENS----RSDEKLLSVFREGVKYRAGIGPGVYDI 728 (793)
Q Consensus 690 ~l~~D~isiE~~----r~~~~~L~~~~~~~~~~~~i~~GVvD~ 728 (793)
++++|++.+=.. -++.+.++.|.. ....-.+-+.+|+.
T Consensus 90 ~~Gad~v~v~pP~y~~~~~~~~~~~~~~-ia~~~~~pi~iYn~ 131 (281)
T cd00408 90 EAGADGVLVVPPYYNKPSQEGIVAHFKA-VADASDLPVILYNI 131 (281)
T ss_pred HcCCCEEEECCCcCCCCCHHHHHHHHHH-HHhcCCCCEEEEEC
Confidence 899999998632 123444555544 11112344455554
No 168
>COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only]
Probab=37.67 E-value=1.6e+02 Score=31.16 Aligned_cols=85 Identities=15% Similarity=0.237 Sum_probs=54.7
Q ss_pred CCeEEEEeCCCCc----hhHHHHHHc--CCCcEEEEecCCCChhhHHHhhhcccCCCeEeeeeecCCCCCCCCHHHHHHH
Q 003819 669 TTQVHTHMCYSNF----NDIIHSIMD--MDADVITIENSRSDEKLLSVFREGVKYRAGIGPGVYDIHSPRIPSTEEIADR 742 (793)
Q Consensus 669 ~~~I~lH~C~g~~----~~i~~~l~~--l~~D~isiE~~r~~~~~L~~~~~~~~~~~~i~~GVvD~~s~~ves~eev~~~ 742 (793)
++.+++|+..+|= ..+++.+.+ ++.+-+-+|.. +++.++.+-+ .+-.+|+-|..++ =++++.++-
T Consensus 127 dvPviVHTPr~nK~e~t~~ildi~~~~~l~~~lvvIDH~--N~etv~~vld---~e~~vGlTvqPgK----lt~~eAveI 197 (254)
T COG1099 127 DVPVIVHTPRRNKKEATSKILDILIESGLKPSLVVIDHV--NEETVDEVLD---EEFYVGLTVQPGK----LTVEEAVEI 197 (254)
T ss_pred CCcEEEeCCCCcchhHHHHHHHHHHHcCCChhheehhcc--cHHHHHHHHh---ccceEEEEecCCc----CCHHHHHHH
Confidence 3679999999883 455665553 55577778754 3555664433 1224666666543 366666655
Q ss_pred HHHHHhhcCCCcEEEcCCCCCCCC
Q 003819 743 INKMLAVLESNILWVNPDCGLKTR 766 (793)
Q Consensus 743 i~~al~~i~~~~l~vsPdCGL~t~ 766 (793)
+++- +++++++|.|||-...
T Consensus 198 V~ey----~~~r~ilnSD~~s~~s 217 (254)
T COG1099 198 VREY----GAERIILNSDAGSAAS 217 (254)
T ss_pred HHHh----CcceEEEecccccccc
Confidence 5543 4799999999998754
No 169
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=37.62 E-value=1.4e+02 Score=32.81 Aligned_cols=66 Identities=17% Similarity=0.210 Sum_probs=40.9
Q ss_pred HHHHHHHCCCCEEEeeccccccCCChHHHHHHHHHHHHHHhccCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEEec
Q 003819 191 VVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLI 269 (793)
Q Consensus 191 ~l~~L~~aG~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~lp~Vd~l~lD~~ 269 (793)
++.+..++|++.||+| +.+. +.++++...+... .+++.+-.- |++..++++.+.++. ||.|..=..
T Consensus 211 ea~eal~~gaDiI~LD------nm~~---e~vk~av~~~~~~--~~~v~ieaS-GGI~~~ni~~yA~tG-vD~Is~gal 276 (289)
T PRK07896 211 QLDEVLAEGAELVLLD------NFPV---WQTQEAVQRRDAR--APTVLLESS-GGLTLDTAAAYAETG-VDYLAVGAL 276 (289)
T ss_pred HHHHHHHcCCCEEEeC------CCCH---HHHHHHHHHHhcc--CCCEEEEEE-CCCCHHHHHHHHhcC-CCEEEeChh
Confidence 3444568999999999 4443 3444444443322 133433322 667457888899998 999887654
No 170
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=37.62 E-value=5.5e+02 Score=27.60 Aligned_cols=147 Identities=12% Similarity=0.163 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHcCCcEEEEcCcccccCCCCCcccHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCchhHHHHHHcC--
Q 003819 614 AIKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDM-- 691 (793)
Q Consensus 614 al~~ev~~L~~aGv~~IQIDEPal~~~l~l~~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~C~g~~~~i~~~l~~l-- 691 (793)
.+.+.+..+.++|+++|=|---. ...+-.+.+.++++.++..+ + ..|.+-+... ++++.-++.
T Consensus 26 ~i~~~A~~~~~~GAdiIDVg~~~-------~~~eE~~r~~~~v~~l~~~~-~----~plsIDT~~~---~v~eaaL~~~~ 90 (261)
T PRK07535 26 FIQKLALKQAEAGADYLDVNAGT-------AVEEEPETMEWLVETVQEVV-D----VPLCIDSPNP---AAIEAGLKVAK 90 (261)
T ss_pred HHHHHHHHHHHCCCCEEEECCCC-------CchhHHHHHHHHHHHHHHhC-C----CCEEEeCCCH---HHHHHHHHhCC
Confidence 45566777889999998877421 11121234666677765432 2 3366655532 456655554
Q ss_pred CCcEEE-EecCC-CChhhHHHhhhcccCCCeEeeeeecCCCCCCC-CH----HHHHHHHHHHHhh-cCCCcEEEcCCCCC
Q 003819 692 DADVIT-IENSR-SDEKLLSVFREGVKYRAGIGPGVYDIHSPRIP-ST----EEIADRINKMLAV-LESNILWVNPDCGL 763 (793)
Q Consensus 692 ~~D~is-iE~~r-~~~~~L~~~~~~~~~~~~i~~GVvD~~s~~ve-s~----eev~~~i~~al~~-i~~~~l~vsPdCGL 763 (793)
+++.|. +-... ...+.++..++ ++-.+.+=..|.+ -.| +. +.....+..+.+. ++++++++-|..|.
T Consensus 91 G~~iINsIs~~~~~~~~~~~l~~~---~g~~vv~m~~~~~--g~P~t~~~~~~~l~~~v~~a~~~GI~~~~IilDPgi~~ 165 (261)
T PRK07535 91 GPPLINSVSAEGEKLEVVLPLVKK---YNAPVVALTMDDT--GIPKDAEDRLAVAKELVEKADEYGIPPEDIYIDPLVLP 165 (261)
T ss_pred CCCEEEeCCCCCccCHHHHHHHHH---hCCCEEEEecCCC--CCCCCHHHHHHHHHHHHHHHHHcCCCHhHEEEeCCCCc
Confidence 665443 11111 12334555555 2222222222222 122 33 3334445555432 34579999888885
Q ss_pred CCCChhHHHHHHHHHHH
Q 003819 764 KTRKYSEVKPALSNMVA 780 (793)
Q Consensus 764 ~t~~~~~~~~kL~~mv~ 780 (793)
-..+.+.....|+++..
T Consensus 166 ~~~~~~~~~~~l~~i~~ 182 (261)
T PRK07535 166 LSAAQDAGPEVLETIRR 182 (261)
T ss_pred ccCChHHHHHHHHHHHH
Confidence 33344445555555533
No 171
>PF05120 GvpG: Gas vesicle protein G ; InterPro: IPR007804 Gas vesicles are intracellular, protein-coated, and hollow organelles found in cyanobacteria and halophilic archaea. They are permeable to ambient gases by diffusion and provide buoyancy, enabling cells to move upwards in water to access oxygen and/or light. Proteins containing this family are involved in the formation of gas vesicles [].
Probab=37.40 E-value=77 Score=27.87 Aligned_cols=36 Identities=22% Similarity=0.258 Sum_probs=29.7
Q ss_pred CHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHH
Q 003819 14 KRELKFALESFWDGKSSADELQNVAADLRASIWNQM 49 (793)
Q Consensus 14 ~reLK~A~e~yw~g~is~~eL~~~~~~~~~~~~~~Q 49 (793)
+++|...-.+|-.|+||++++.+..+++-.+.-..+
T Consensus 34 ~~~L~~L~~~~e~GEIseeEf~~~E~eLL~rL~~~~ 69 (79)
T PF05120_consen 34 RRELAELQEALEAGEISEEEFERREDELLDRLEEAR 69 (79)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 477888888999999999999999998866655444
No 172
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=37.02 E-value=2.3e+02 Score=31.86 Aligned_cols=64 Identities=19% Similarity=0.195 Sum_probs=38.3
Q ss_pred HHHHHHHcCCcEEEEcCcccccCCCCCcccHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCchhHHHHHHcCCCcEEE
Q 003819 618 EVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDADVIT 697 (793)
Q Consensus 618 ev~~L~~aGv~~IQIDEPal~~~l~l~~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~C~g~~~~i~~~l~~l~~D~is 697 (793)
.+..+.++|+.+||+-++.+. ..++++.+.. +..++..-. ..+.+| +-++.-...++|+++
T Consensus 162 ~l~~al~~Gv~~VQLR~K~~~---------~~~~~~~a~~-L~~l~~~~~--~~lIIN-------D~vdlAl~~~aDGVH 222 (347)
T PRK02615 162 VVEAALKGGVTLVQYRDKTAD---------DRQRLEEAKK-LKELCHRYG--ALFIVN-------DRVDIALAVDADGVH 222 (347)
T ss_pred HHHHHHHcCCCEEEECCCCCC---------HHHHHHHHHH-HHHHHHHhC--CeEEEe-------ChHHHHHHcCCCEEE
Confidence 355667889999999987653 2234444333 333333221 345555 235666788899999
Q ss_pred Eec
Q 003819 698 IEN 700 (793)
Q Consensus 698 iE~ 700 (793)
+-.
T Consensus 223 Lgq 225 (347)
T PRK02615 223 LGQ 225 (347)
T ss_pred eCh
Confidence 863
No 173
>COG3462 Predicted membrane protein [Function unknown]
Probab=36.91 E-value=38 Score=31.36 Aligned_cols=25 Identities=16% Similarity=0.417 Sum_probs=20.6
Q ss_pred HHHHHHHHHccchhhHHHHHHhhccccceeeeehhhhcccCCHHHHHHHHHHH
Q 003819 446 LRRVRREFKAKKRVLLLFHILLLNFHHFQIVFHKLVFYFRISEDDYVKTIKEE 498 (793)
Q Consensus 446 l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 498 (793)
.--++++|.+|+ ||+|||++.+++.
T Consensus 91 ~eIlkER~AkGE----------------------------ItEEEY~r~~~~i 115 (117)
T COG3462 91 EEILKERYAKGE----------------------------ITEEEYRRIIRTI 115 (117)
T ss_pred HHHHHHHHhcCC----------------------------CCHHHHHHHHHHh
Confidence 344678999999 9999999988753
No 174
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=36.86 E-value=3.8e+02 Score=28.39 Aligned_cols=127 Identities=6% Similarity=0.043 Sum_probs=61.0
Q ss_pred HHHHHHHCCCCEEEeeccccccCCChHHHHHHHHHHHHHHhccCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEEec-
Q 003819 191 VVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLI- 269 (793)
Q Consensus 191 ~l~~L~~aG~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~lp~Vd~l~lD~~- 269 (793)
.++.+.+.|++++.+=+-.=.........+.++ .+.+.. ..++.+..-..+. ++ +..+..+. ++.+-+--.
T Consensus 35 ~a~~~~~~G~~~l~v~Dl~~~~~~~~~n~~~i~----~i~~~~-~~pv~~~GGi~s~-~d-~~~~~~~G-a~~vivgt~~ 106 (254)
T TIGR00735 35 LAQRYDEEGADELVFLDITASSEGRTTMIDVVE----RTAETV-FIPLTVGGGIKSI-ED-VDKLLRAG-ADKVSINTAA 106 (254)
T ss_pred HHHHHHHcCCCEEEEEcCCcccccChhhHHHHH----HHHHhc-CCCEEEECCCCCH-HH-HHHHHHcC-CCEEEEChhH
Confidence 344455789998876543211111111233333 333322 2466666333333 44 44556677 887755432
Q ss_pred -cCCCChhhHhhhCCCCC-EEEEEEeeCC-----------CCCCC-CHHHHHHHHHHHhhhcCCCcEEEeC
Q 003819 270 -RGTKTLDLIKTEFPLGK-YLFAGVVDGR-----------NIWAN-DLASSLTTLQDLAGTVGKDKVVVST 326 (793)
Q Consensus 270 -~~~~~l~~l~~~~p~~k-~l~lGvVdgr-----------n~w~e-d~~~i~~~i~~~~~~v~~e~l~vsp 326 (793)
.++.-+..+.+.+++++ .+++-+-++. +.|.+ +.....+.++.+. ..|.+.+.++.
T Consensus 107 ~~~p~~~~~~~~~~~~~~iv~slD~~~g~~~~~~~~~v~i~gw~~~~~~~~~~~~~~l~-~~G~~~iivt~ 176 (254)
T TIGR00735 107 VKNPELIYELADRFGSQCIVVAIDAKRVYVNSYCWYEVYIYGGRESTGLDAVEWAKEVE-KLGAGEILLTS 176 (254)
T ss_pred hhChHHHHHHHHHcCCCCEEEEEEeccCCCCCCccEEEEEeCCcccCCCCHHHHHHHHH-HcCCCEEEEeC
Confidence 23444444554576555 3455444442 22322 2333344444443 35667888854
No 175
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=36.59 E-value=1.1e+02 Score=33.46 Aligned_cols=64 Identities=11% Similarity=0.124 Sum_probs=40.7
Q ss_pred HHHHHHHcCCcEEEEcCcccccCCCCCcccHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCchhHHHHHHcCCCcEEE
Q 003819 618 EVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDADVIT 697 (793)
Q Consensus 618 ev~~L~~aGv~~IQIDEPal~~~l~l~~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~C~g~~~~i~~~l~~l~~D~is 697 (793)
|+.+..++|+++||+|.... +-+++++..++. ..+ ++.+-...|=-.+.+...+++++|+||
T Consensus 211 ea~eal~~gaDiI~LDnm~~------------e~vk~av~~~~~----~~~--~v~ieaSGGI~~~ni~~yA~tGvD~Is 272 (289)
T PRK07896 211 QLDEVLAEGAELVLLDNFPV------------WQTQEAVQRRDA----RAP--TVLLESSGGLTLDTAAAYAETGVDYLA 272 (289)
T ss_pred HHHHHHHcCCCEEEeCCCCH------------HHHHHHHHHHhc----cCC--CEEEEEECCCCHHHHHHHHhcCCCEEE
Confidence 44445678999999995331 234556654433 222 344555533234778889999999999
Q ss_pred Ee
Q 003819 698 IE 699 (793)
Q Consensus 698 iE 699 (793)
+=
T Consensus 273 ~g 274 (289)
T PRK07896 273 VG 274 (289)
T ss_pred eC
Confidence 86
No 176
>PRK08999 hypothetical protein; Provisional
Probab=36.58 E-value=1.6e+02 Score=32.00 Aligned_cols=65 Identities=18% Similarity=0.112 Sum_probs=40.9
Q ss_pred HHHHHHHHcCCcEEEEcCcccccCCCCCcccHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCchhHHHHHHcCCCcEE
Q 003819 617 DEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDADVI 696 (793)
Q Consensus 617 ~ev~~L~~aGv~~IQIDEPal~~~l~l~~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~C~g~~~~i~~~l~~l~~D~i 696 (793)
+.++.+.+.|+.+||+-++.+. ..++... ...++..+..- +..+.+|- -++...++++|++
T Consensus 148 ~~~~~~l~~g~~~vqlR~k~~~---------~~~~~~~-~~~l~~~~~~~--~~~liind-------~~~la~~~~~~Gv 208 (312)
T PRK08999 148 ARLERALAAGIRLIQLRAPQLP---------PAAYRAL-ARAALGLCRRA--GAQLLLNG-------DPELAEDLGADGV 208 (312)
T ss_pred HHHHHHHHCCCcEEEEeCCCCC---------HHHHHHH-HHHHHHHHHHh--CCEEEEEC-------cHHHHHhcCCCEE
Confidence 4455556889999999988643 2233333 33344444332 24577772 2466778999999
Q ss_pred EEec
Q 003819 697 TIEN 700 (793)
Q Consensus 697 siE~ 700 (793)
++-.
T Consensus 209 Hl~~ 212 (312)
T PRK08999 209 HLTS 212 (312)
T ss_pred EcCh
Confidence 9974
No 177
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=36.39 E-value=5.1e+02 Score=26.86 Aligned_cols=124 Identities=15% Similarity=0.121 Sum_probs=66.0
Q ss_pred HHHHHHHHcCCcEE--EEcCcccccCCCCCcccHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCC-C------CchhHHHH
Q 003819 617 DEVEDLEKAGITVI--QIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCY-S------NFNDIIHS 687 (793)
Q Consensus 617 ~ev~~L~~aGv~~I--QIDEPal~~~l~l~~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~C~-g------~~~~i~~~ 687 (793)
.++++..++|++.| |+..-.+. ....++.+....+.+ .+.. +.+.+.++. | ...+.+..
T Consensus 80 ~~v~~a~~~Ga~~v~~~~~~~~~~---------~~~~~~~i~~v~~~~-~~~g--~~~iie~~~~g~~~~~~~~~~~i~~ 147 (235)
T cd00958 80 ASVEDAVRLGADAVGVTVYVGSEE---------EREMLEELARVAAEA-HKYG--LPLIAWMYPRGPAVKNEKDPDLIAY 147 (235)
T ss_pred cCHHHHHHCCCCEEEEEEecCCch---------HHHHHHHHHHHHHHH-HHcC--CCEEEEEeccCCcccCccCHHHHHH
Confidence 35667788999866 88754321 223333333333332 3322 345554443 1 01123333
Q ss_pred ----HHcCCCcEEEEecCCCChhhHHHhhhcccCCCeEeeeeecCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEcCC
Q 003819 688 ----IMDMDADVITIENSRSDEKLLSVFREGVKYRAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLESNILWVNPD 760 (793)
Q Consensus 688 ----l~~l~~D~isiE~~r~~~~~L~~~~~~~~~~~~i~~GVvD~~s~~ves~eev~~~i~~al~~i~~~~l~vsPd 760 (793)
..++++|.|.+-... +.+.++.+.+..+.| |+=+-.+...++++..+.+..+.+ .|.+.+.+...
T Consensus 148 ~~~~a~~~GaD~Ik~~~~~-~~~~~~~i~~~~~~p------vv~~GG~~~~~~~~~l~~~~~~~~-~Ga~gv~vg~~ 216 (235)
T cd00958 148 AARIGAELGADIVKTKYTG-DAESFKEVVEGCPVP------VVIAGGPKKDSEEEFLKMVYDAME-AGAAGVAVGRN 216 (235)
T ss_pred HHHHHHHHCCCEEEecCCC-CHHHHHHHHhcCCCC------EEEeCCCCCCCHHHHHHHHHHHHH-cCCcEEEechh
Confidence 567899999996433 445555554411222 222223345688888888888876 56665555443
No 178
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=36.28 E-value=1.5e+02 Score=32.23 Aligned_cols=65 Identities=12% Similarity=0.060 Sum_probs=40.4
Q ss_pred HHHHHHHHCCCCEEEeeccccccCCChHHHHHHHHHHHHHHhccCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEE
Q 003819 190 EVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFD 267 (793)
Q Consensus 190 ~~l~~L~~aG~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~lp~Vd~l~lD 267 (793)
+++++..++|++.||+| ..+. +.++++...+.+. .+++.+.-- |++..++++.+.+++ ||.|..=
T Consensus 199 eea~ea~~~GaDiI~lD------n~~~---e~l~~~v~~l~~~--~~~~~leas-GGI~~~ni~~ya~~G-vD~is~g 263 (277)
T TIGR01334 199 EQALTVLQASPDILQLD------KFTP---QQLHHLHERLKFF--DHIPTLAAA-GGINPENIADYIEAG-IDLFITS 263 (277)
T ss_pred HHHHHHHHcCcCEEEEC------CCCH---HHHHHHHHHHhcc--CCCEEEEEE-CCCCHHHHHHHHhcC-CCEEEeC
Confidence 34556678999999999 3433 3344444444321 234444333 777557788889998 9988654
No 179
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=36.26 E-value=73 Score=22.70 Aligned_cols=26 Identities=19% Similarity=0.409 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHccchhhHHHHHHhhccccceeeeehhhhcccCCHHHHHHHHHH
Q 003819 444 MDLRRVRREFKAKKRVLLLFHILLLNFHHFQIVFHKLVFYFRISEDDYVKTIKE 497 (793)
Q Consensus 444 ~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 497 (793)
..|+...+.|.+|. ||+++|++.-+.
T Consensus 3 ~~L~~L~~l~~~G~----------------------------IseeEy~~~k~~ 28 (31)
T PF09851_consen 3 DRLEKLKELYDKGE----------------------------ISEEEYEQKKAR 28 (31)
T ss_pred HHHHHHHHHHHcCC----------------------------CCHHHHHHHHHH
Confidence 35777888999999 999999987554
No 180
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=36.09 E-value=2.1e+02 Score=29.97 Aligned_cols=77 Identities=13% Similarity=0.200 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHCCCCEEEeec--cccccCCChHHHHHHHHHHHHHHhccCCCcEEEEeccCCCchhhHHHHhcCCCccEE
Q 003819 187 VYKEVVAELKAAGATWIQFDE--PTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGF 264 (793)
Q Consensus 187 ~Y~~~l~~L~~aG~~~VQiDE--P~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~lp~Vd~l 264 (793)
-+.+++++|.++|++|+.+|= -.++-+..- - .+..+.+.+..++..+-+|..-.+. ...++.+.+.. +|.+
T Consensus 20 ~l~~~~~~l~~~~~~~~H~DimDg~fvpn~~~-G----~~~v~~lr~~~~~~~lDvHLm~~~p-~~~i~~~~~~G-ad~i 92 (228)
T PTZ00170 20 KLADEAQDVLSGGADWLHVDVMDGHFVPNLSF-G----PPVVKSLRKHLPNTFLDCHLMVSNP-EKWVDDFAKAG-ASQF 92 (228)
T ss_pred HHHHHHHHHHHcCCCEEEEecccCccCCCcCc-C----HHHHHHHHhcCCCCCEEEEECCCCH-HHHHHHHHHcC-CCEE
Confidence 367889999999999999992 122211110 0 1222223221112233334332333 44567777777 8877
Q ss_pred EEEecc
Q 003819 265 GFDLIR 270 (793)
Q Consensus 265 ~lD~~~ 270 (793)
.+=+..
T Consensus 93 tvH~ea 98 (228)
T PTZ00170 93 TFHIEA 98 (228)
T ss_pred EEeccC
Confidence 665543
No 181
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=35.66 E-value=5.8e+02 Score=27.36 Aligned_cols=140 Identities=11% Similarity=0.087 Sum_probs=81.8
Q ss_pred HHHHHHHHcCCcEEEEcCcccccCCCCCcccHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCchhHHHHHHcCCCcEE
Q 003819 617 DEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDADVI 696 (793)
Q Consensus 617 ~ev~~L~~aGv~~IQIDEPal~~~l~l~~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~C~g~~~~i~~~l~~l~~D~i 696 (793)
+.++.|.++|++.|++=-|+.... . .++.+.+.+ ......+..+ +..+..+ ++...+.++|.|
T Consensus 26 ~i~~~L~~~Gv~~IEvG~P~~~~~---------~-----~~~~~~l~~-~~~~~~v~~~-~r~~~~d-i~~a~~~g~~~i 88 (262)
T cd07948 26 EIAKALDAFGVDYIELTSPAASPQ---------S-----RADCEAIAK-LGLKAKILTH-IRCHMDD-ARIAVETGVDGV 88 (262)
T ss_pred HHHHHHHHcCCCEEEEECCCCCHH---------H-----HHHHHHHHh-CCCCCcEEEE-ecCCHHH-HHHHHHcCcCEE
Confidence 345678899999999987764321 1 112222211 1212456554 4456655 567778899999
Q ss_pred EEecCCCC-----------hhhHHHhhhc----ccCCCeEeeeeecCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEcCCC
Q 003819 697 TIENSRSD-----------EKLLSVFREG----VKYRAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLESNILWVNPDC 761 (793)
Q Consensus 697 siE~~r~~-----------~~~L~~~~~~----~~~~~~i~~GVvD~~s~~ves~eev~~~i~~al~~i~~~~l~vsPdC 761 (793)
.+-.+.|+ .+.++.+.+. ...+-.+.+++-|+... +++.+.+.++++.+ .|++++.+.-.-
T Consensus 89 ~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~eda~r~---~~~~l~~~~~~~~~-~g~~~i~l~Dt~ 164 (262)
T cd07948 89 DLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSSEDSFRS---DLVDLLRVYRAVDK-LGVNRVGIADTV 164 (262)
T ss_pred EEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeeCCC---CHHHHHHHHHHHHH-cCCCEEEECCcC
Confidence 98754332 2223322110 12245688888876432 37777777777755 588999888777
Q ss_pred CCCCCChhHHHHHHHHHH
Q 003819 762 GLKTRKYSEVKPALSNMV 779 (793)
Q Consensus 762 GL~t~~~~~~~~kL~~mv 779 (793)
|.. +|+++..-++.+.
T Consensus 165 G~~--~P~~v~~~~~~~~ 180 (262)
T cd07948 165 GIA--TPRQVYELVRTLR 180 (262)
T ss_pred CCC--CHHHHHHHHHHHH
Confidence 754 6665555554443
No 182
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=35.32 E-value=5.3e+02 Score=28.26 Aligned_cols=76 Identities=16% Similarity=0.130 Sum_probs=42.9
Q ss_pred HHHcCCcEEEEcCccccc--CCCC-CcccHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCchhH---HHHHHcCCCcE
Q 003819 622 LEKAGITVIQIDEAALRE--GLPL-RKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDI---IHSIMDMDADV 695 (793)
Q Consensus 622 L~~aGv~~IQIDEPal~~--~l~l-~~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~C~g~~~~i---~~~l~~l~~D~ 695 (793)
++++|.+.|.+---++.. ++|= ..-++++ .+...+.+...++-++-+=.-..||+...+ +..+.+.++.+
T Consensus 31 ~e~aGf~ai~~ss~~va~slG~pD~g~l~~~e----~~~~~~~I~~~~~lPv~aD~d~GyG~~~~v~~tV~~~~~aGvag 106 (290)
T TIGR02321 31 AEQAGFGGIWGSGFELSASYAVPDANILSMST----HLEMMRAIASTVSIPLIADIDTGFGNAVNVHYVVPQYEAAGASA 106 (290)
T ss_pred HHHcCCCEEEECHHHHHHHCCCCCcccCCHHH----HHHHHHHHHhccCCCEEEECCCCCCCcHHHHHHHHHHHHcCCeE
Confidence 455688877776544332 2221 0112333 344444554444322334445678875555 66677899999
Q ss_pred EEEecC
Q 003819 696 ITIENS 701 (793)
Q Consensus 696 isiE~~ 701 (793)
|+||..
T Consensus 107 i~IEDq 112 (290)
T TIGR02321 107 IVMEDK 112 (290)
T ss_pred EEEeCC
Confidence 999964
No 183
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=35.13 E-value=3.5e+02 Score=29.54 Aligned_cols=138 Identities=20% Similarity=0.152 Sum_probs=73.4
Q ss_pred CceeeechHHHHhhcccccC-CCChHHHHHHHHHHHHHHHHHHHHcCCcEEEEcCcccccCCCCCcccHHHHHHHHHHHH
Q 003819 581 PMKGMLTGPVTILNWSFVRN-DQPRFETCYQIALAIKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSF 659 (793)
Q Consensus 581 pvK~~LtGPvTll~~s~~~~-~~~~~e~~~~lA~al~~ev~~L~~aGv~~IQIDEPal~~~l~l~~~~~~~~l~~av~a~ 659 (793)
..+|.++-++|- |+.+ ..+ -.++++.++.|.++||+-|-+--- ..|...+..+++...++.+++
T Consensus 7 ~~~Gv~~a~vTP----f~~dg~iD--------~~~l~~li~~l~~~Gv~Gi~~~Gs-tGE~~~Lt~eEr~~~~~~~~~-- 71 (303)
T PRK03620 7 LGSGLLSFPVTP----FDADGSFD--------EAAYREHLEWLAPYGAAALFAAGG-TGEFFSLTPDEYSQVVRAAVE-- 71 (303)
T ss_pred CcCceEEeeeCC----CCCCCCcC--------HHHHHHHHHHHHHcCCCEEEECcC-CcCcccCCHHHHHHHHHHHHH--
Confidence 456777666664 3222 233 246788888999999997776532 223333333333333333322
Q ss_pred HHHhcCCCCCCeEEEEeCCCCchhHHHH---HHcCCCcEEEEecC---C-CChhhHHHhhhcccCCCeEeeeeecCCCCC
Q 003819 660 RITNCGVQDTTQVHTHMCYSNFNDIIHS---IMDMDADVITIENS---R-SDEKLLSVFREGVKYRAGIGPGVYDIHSPR 732 (793)
Q Consensus 660 ~~~~~~v~~~~~I~lH~C~g~~~~i~~~---l~~l~~D~isiE~~---r-~~~~~L~~~~~~~~~~~~i~~GVvD~~s~~ 732 (793)
.+.+...|..|++ ++..+.++. ..++++|++.+=.. + +..+..+.|+. ..-...+-+.+|+. +-
T Consensus 72 -----~~~~~~pvi~gv~-~~t~~~i~~~~~a~~~Gadav~~~pP~y~~~~~~~i~~~f~~-va~~~~lpi~lYn~--~g 142 (303)
T PRK03620 72 -----TTAGRVPVIAGAG-GGTAQAIEYAQAAERAGADGILLLPPYLTEAPQEGLAAHVEA-VCKSTDLGVIVYNR--DN 142 (303)
T ss_pred -----HhCCCCcEEEecC-CCHHHHHHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHH-HHHhCCCCEEEEcC--CC
Confidence 2333456888888 476655554 46799999987522 1 23334455544 21112366667772 22
Q ss_pred CC-CHHHHHHH
Q 003819 733 IP-STEEIADR 742 (793)
Q Consensus 733 ve-s~eev~~~ 742 (793)
+. +++.+.+.
T Consensus 143 ~~l~~~~l~~L 153 (303)
T PRK03620 143 AVLTADTLARL 153 (303)
T ss_pred CCCCHHHHHHH
Confidence 22 55554433
No 184
>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional
Probab=35.02 E-value=4.1e+02 Score=33.18 Aligned_cols=111 Identities=13% Similarity=0.167 Sum_probs=61.0
Q ss_pred HHHHHHHHCCCCEEEeeccccccCCChHHHHHHHHHHHHHHhccCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEEec
Q 003819 190 EVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLI 269 (793)
Q Consensus 190 ~~l~~L~~aG~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~lp~Vd~l~lD~~ 269 (793)
+.++++.++|+.+||+-|+-+ +.++...+.+....+.+.. ++.++|+.. .+....++ .| +||--.
T Consensus 23 ~~l~~~l~~g~~~iqlR~K~~----~~~~~~~~a~~l~~l~~~~-~~~liind~--------~~la~~~~-~d-VHlg~~ 87 (755)
T PRK09517 23 GIVDSAISGGVSVVQLRDKNA----GVEDVRAAAKELKELCDAR-GVALVVNDR--------LDVAVELG-LH-VHIGQG 87 (755)
T ss_pred HHHHHHHhcCCCEEEEeCCCC----CHHHHHHHHHHHHHHHHHh-CCeEEEeCh--------HHHHHHcC-CC-eecCCC
Confidence 456667788999999998764 3344444444444444322 367777733 34556778 88 888643
Q ss_pred cCCCChhhHhhhCCCCCEEEEEEeeCCCCCCCCHHHHHHHHHHHhhhc---CCCcEEEeC
Q 003819 270 RGTKTLDLIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTV---GKDKVVVST 326 (793)
Q Consensus 270 ~~~~~l~~l~~~~p~~k~l~lGvVdgrn~w~ed~~~i~~~i~~~~~~v---~~e~l~vsp 326 (793)
+- .....++.++.++.| |+ +. .+.+++......+. .+ |.|=+.++|
T Consensus 88 dl--~~~~~r~~~~~~~~i--G~-S~-----h~~~e~~~~~~~~~-~~g~~gaDYi~~Gp 136 (755)
T PRK09517 88 DT--PYTQARRLLPAHLEL--GL-TI-----ETLDQLEAVIAQCA-ETGVALPDVIGIGP 136 (755)
T ss_pred cC--CHHHHHHhcCCCCEE--EE-eC-----CCHHHHHHHHhhhc-cCCCCCCCEEEECC
Confidence 21 234444435555555 44 22 34555432222221 12 267777776
No 185
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=34.63 E-value=4.9e+02 Score=28.16 Aligned_cols=120 Identities=19% Similarity=0.144 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHcCCcEEEEcCcccccCCCCCcccHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCchhHHH---HHH
Q 003819 613 LAIKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIH---SIM 689 (793)
Q Consensus 613 ~al~~ev~~L~~aGv~~IQIDEPal~~~l~l~~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~C~g~~~~i~~---~l~ 689 (793)
..++..++.+.+.|++-|-+--- ..|...+..+++...++.+++. +.+++.|..|+|. +..+.++ ...
T Consensus 21 ~~l~~l~~~l~~~Gv~gi~v~Gs-tGE~~~Ls~eEr~~l~~~~~~~-------~~~~~pvi~gv~~-~t~~~i~~a~~a~ 91 (289)
T cd00951 21 DAYRAHVEWLLSYGAAALFAAGG-TGEFFSLTPDEYAQVVRAAVEE-------TAGRVPVLAGAGY-GTATAIAYAQAAE 91 (289)
T ss_pred HHHHHHHHHHHHcCCCEEEECcC-CcCcccCCHHHHHHHHHHHHHH-------hCCCCCEEEecCC-CHHHHHHHHHHHH
Confidence 46778888899999987765431 2333333333333333333332 3334568888885 7665554 446
Q ss_pred cCCCcEEEEecC----CCChhhHHHhhhcccCCCeEeeeeecCCCCCCCCHHHHHHHH
Q 003819 690 DMDADVITIENS----RSDEKLLSVFREGVKYRAGIGPGVYDIHSPRIPSTEEIADRI 743 (793)
Q Consensus 690 ~l~~D~isiE~~----r~~~~~L~~~~~~~~~~~~i~~GVvD~~s~~ves~eev~~~i 743 (793)
++++|++.+=.. .+..+..+.|++ ......+-+.+|+- +...=+++.+.+..
T Consensus 92 ~~Gad~v~~~pP~y~~~~~~~i~~~f~~-v~~~~~~pi~lYn~-~g~~l~~~~l~~L~ 147 (289)
T cd00951 92 KAGADGILLLPPYLTEAPQEGLYAHVEA-VCKSTDLGVIVYNR-ANAVLTADSLARLA 147 (289)
T ss_pred HhCCCEEEECCCCCCCCCHHHHHHHHHH-HHhcCCCCEEEEeC-CCCCCCHHHHHHHH
Confidence 899999988622 122334455544 21112366667772 21112565554443
No 186
>PRK14847 hypothetical protein; Provisional
Probab=34.27 E-value=4.5e+02 Score=29.49 Aligned_cols=142 Identities=8% Similarity=0.025 Sum_probs=74.0
Q ss_pred HHHHHcCCcEEEEcCcccccCCCCCcccHHHHHHHHHHHHHHHhcC--CCCCCeE--EEEeCCCCchhHHHHHHcCCCcE
Q 003819 620 EDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCG--VQDTTQV--HTHMCYSNFNDIIHSIMDMDADV 695 (793)
Q Consensus 620 ~~L~~aGv~~IQIDEPal~~~l~l~~~~~~~~l~~av~a~~~~~~~--v~~~~~I--~lH~C~g~~~~i~~~l~~l~~D~ 695 (793)
+.|.+.|++.|.+==|+..+. + .++++.+.+. ++.++.| +.++.-.+.+..++.....+.+.
T Consensus 61 ~~L~~lGVd~IEvG~Pa~s~~---------e-----~e~ir~I~~~~~~~~~~~i~~~~r~~~~dId~a~e~~~~~~~~~ 126 (333)
T PRK14847 61 EQLVAVGLKEIEVAFPSASQT---------D-----FDFVRKLIDERRIPDDVTIEALTQSRPDLIARTFEALAGSPRAI 126 (333)
T ss_pred HHHHHcCCCEEEeeCCCCCHH---------H-----HHHHHHHHHhCCCCCCcEEEEEecCcHHHHHHHHHHhCCCCCCE
Confidence 457788999999988886532 1 2344444333 2122333 33332233344555555666677
Q ss_pred EEEecCCCChh-----------hHHHhhhccc----C-----CC--eEeeeeecCCCCCCCCHHHHHHHHHHHHhhcCCC
Q 003819 696 ITIENSRSDEK-----------LLSVFREGVK----Y-----RA--GIGPGVYDIHSPRIPSTEEIADRINKMLAVLESN 753 (793)
Q Consensus 696 isiE~~r~~~~-----------~L~~~~~~~~----~-----~~--~i~~GVvD~~s~~ves~eev~~~i~~al~~i~~~ 753 (793)
+++-...|+.+ .++...+... . +. .+-+|.=|.. ..+++-+.+.++.+.+..|+.
T Consensus 127 Vhi~~p~Sd~h~~~kl~~s~~~vl~~~~~~v~~Ak~~~~~~~g~~~~V~~~~EDas---Rad~dfL~~~~~~a~~~~ga~ 203 (333)
T PRK14847 127 VHLYNPIAPQWRRIVFGMSRAEIKEIALAGTRQIRALADANPGTQWIYEYSPETFS---LAELDFAREVCDAVSAIWGPT 203 (333)
T ss_pred EEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhccccCCCceEEEEeeecCC---CCCHHHHHHHHHHHHHHhCCC
Confidence 88886554321 1221111000 1 11 3455555532 246777777777777767777
Q ss_pred c-----EEEcCCCCCCCCChhHHHHHHHHHHH
Q 003819 754 I-----LWVNPDCGLKTRKYSEVKPALSNMVA 780 (793)
Q Consensus 754 ~-----l~vsPdCGL~t~~~~~~~~kL~~mv~ 780 (793)
+ +-++--.|. .++.+....++.|.+
T Consensus 204 r~~a~~i~l~DTVG~--~~P~~~~~~i~~l~~ 233 (333)
T PRK14847 204 PQRKMIINLPATVES--STANVYADQIEWMHR 233 (333)
T ss_pred ccCCcEEEeCCcccc--CCHHHHHHHHHHHHH
Confidence 6 333333444 466666666666553
No 187
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=34.15 E-value=6.1e+02 Score=27.34 Aligned_cols=79 Identities=16% Similarity=0.135 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHcCCcEEEEcCcccccCCCCCcccHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCchhHHHH---HH
Q 003819 613 LAIKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHS---IM 689 (793)
Q Consensus 613 ~al~~ev~~L~~aGv~~IQIDEPal~~~l~l~~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~C~g~~~~i~~~---l~ 689 (793)
.++++.++.|.+.|++-|-+- =...|...+..+++...++.++++ +++++.|.+|++-.+.++.++. ..
T Consensus 22 ~~l~~~i~~l~~~Gv~gi~~~-Gs~GE~~~ls~~Er~~~~~~~~~~-------~~~~~~vi~gv~~~~~~~~i~~a~~a~ 93 (292)
T PRK03170 22 AALRKLVDYLIANGTDGLVVV-GTTGESPTLTHEEHEELIRAVVEA-------VNGRVPVIAGTGSNSTAEAIELTKFAE 93 (292)
T ss_pred HHHHHHHHHHHHcCCCEEEEC-CcCCccccCCHHHHHHHHHHHHHH-------hCCCCcEEeecCCchHHHHHHHHHHHH
Confidence 477888999999999987764 223344334433344434443333 2334568899986676655554 46
Q ss_pred cCCCcEEEEe
Q 003819 690 DMDADVITIE 699 (793)
Q Consensus 690 ~l~~D~isiE 699 (793)
++++|++.+=
T Consensus 94 ~~G~d~v~~~ 103 (292)
T PRK03170 94 KAGADGALVV 103 (292)
T ss_pred HcCCCEEEEC
Confidence 7999999885
No 188
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=33.57 E-value=1.7e+02 Score=31.96 Aligned_cols=67 Identities=10% Similarity=0.021 Sum_probs=40.0
Q ss_pred HHHHHHHHCCCCEEEeeccccccCCChHHHHHHHHHHHHHHhccCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEEec
Q 003819 190 EVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLI 269 (793)
Q Consensus 190 ~~l~~L~~aG~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~lp~Vd~l~lD~~ 269 (793)
+++++..++|++.||+| ..+.+++. ++...+.+. .+++.+..- |++..+++..+..+. ||.|..=..
T Consensus 200 eqa~ea~~agaDiI~LD------n~~~e~l~---~av~~~~~~--~~~~~leaS-GGI~~~ni~~yA~tG-vD~Is~gal 266 (284)
T PRK06096 200 KEAIAALRAQPDVLQLD------KFSPQQAT---EIAQIAPSL--APHCTLSLA-GGINLNTLKNYADCG-IRLFITSAP 266 (284)
T ss_pred HHHHHHHHcCCCEEEEC------CCCHHHHH---HHHHHhhcc--CCCeEEEEE-CCCCHHHHHHHHhcC-CCEEEECcc
Confidence 34455678899999998 34444443 333333221 133433322 777557788888998 998865443
No 189
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=33.48 E-value=2.1e+02 Score=31.23 Aligned_cols=66 Identities=18% Similarity=0.398 Sum_probs=41.7
Q ss_pred HHHHHHHHcCCcEEEEcCcccccCCCCCcccHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCc-hhHHHHHHcCCCcE
Q 003819 617 DEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNF-NDIIHSIMDMDADV 695 (793)
Q Consensus 617 ~ev~~L~~aGv~~IQIDEPal~~~l~l~~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~C~g~~-~~i~~~l~~l~~D~ 695 (793)
+|+....++|+++||+|-+... -+..+++.++.. +.++ ++.+-.. |+. .+.+..++++++|+
T Consensus 193 eea~~a~~agaDiI~LDn~~~e------------~l~~~v~~l~~~--~~~~--~~~leaS-GGI~~~ni~~yA~tGvD~ 255 (278)
T PRK08385 193 EDALKAAKAGADIIMLDNMTPE------------EIREVIEALKRE--GLRE--RVKIEVS-GGITPENIEEYAKLDVDV 255 (278)
T ss_pred HHHHHHHHcCcCEEEECCCCHH------------HHHHHHHHHHhc--CcCC--CEEEEEE-CCCCHHHHHHHHHcCCCE
Confidence 4566667899999999986421 233344443322 1112 3445555 444 36788899999999
Q ss_pred EEEe
Q 003819 696 ITIE 699 (793)
Q Consensus 696 isiE 699 (793)
||.=
T Consensus 256 Is~g 259 (278)
T PRK08385 256 ISLG 259 (278)
T ss_pred EEeC
Confidence 9986
No 190
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=33.07 E-value=1.2e+02 Score=32.99 Aligned_cols=60 Identities=17% Similarity=0.248 Sum_probs=38.4
Q ss_pred HHHHHHHcCCcEEEEcCcccccCCCCCcccHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCc-hhHHHHHHcCCCcEE
Q 003819 618 EVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNF-NDIIHSIMDMDADVI 696 (793)
Q Consensus 618 ev~~L~~aGv~~IQIDEPal~~~l~l~~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~C~g~~-~~i~~~l~~l~~D~i 696 (793)
|+.+..++|+++||+|-.... -+.++++..+ .. ..+-.. |+. .+.+..+.++++|+|
T Consensus 206 ea~ea~~~gaDiI~LDn~s~e------------~l~~av~~~~-------~~--~~leaS-GGI~~~ni~~yA~tGVD~I 263 (281)
T PRK06106 206 QLEEALELGVDAVLLDNMTPD------------TLREAVAIVA-------GR--AITEAS-GRITPETAPAIAASGVDLI 263 (281)
T ss_pred HHHHHHHcCCCEEEeCCCCHH------------HHHHHHHHhC-------CC--ceEEEE-CCCCHHHHHHHHhcCCCEE
Confidence 445556889999999986532 2334444331 11 123334 544 367888999999999
Q ss_pred EEe
Q 003819 697 TIE 699 (793)
Q Consensus 697 siE 699 (793)
|+=
T Consensus 264 s~G 266 (281)
T PRK06106 264 SVG 266 (281)
T ss_pred EeC
Confidence 986
No 191
>PRK08508 biotin synthase; Provisional
Probab=32.93 E-value=6.5e+02 Score=27.11 Aligned_cols=131 Identities=17% Similarity=0.151 Sum_probs=78.6
Q ss_pred HHHHCCCCEEEe--eccccccCCChHHHHHHHHHHHHHHhccCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEEeccC
Q 003819 194 ELKAAGATWIQF--DEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLIRG 271 (793)
Q Consensus 194 ~L~~aG~~~VQi--DEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~lp~Vd~l~lD~~~~ 271 (793)
+..+.|+.-+-+ ..+.+ ++.+.+.+.+.++.+.+.. +++.+..+.|....+.+..|.+.. +|.+++++..+
T Consensus 51 ~a~~~g~~~~~lv~sg~~~----~~~~~e~~~ei~~~ik~~~--p~l~i~~s~G~~~~e~l~~Lk~aG-ld~~~~~lEt~ 123 (279)
T PRK08508 51 MAKANGALGFCLVTSGRGL----DDKKLEYVAEAAKAVKKEV--PGLHLIACNGTASVEQLKELKKAG-IFSYNHNLETS 123 (279)
T ss_pred HHHHCCCCEEEEEeccCCC----CcccHHHHHHHHHHHHhhC--CCcEEEecCCCCCHHHHHHHHHcC-CCEEcccccch
Confidence 344568865433 22221 2235677777777776532 456666666755467788888888 99999876432
Q ss_pred ---------CCChhhHhhh---C-CCCCEEEEEEeeCCCCCCCCHHHHHHHHHHHhhhcCCCcEEEeCCCCCccccc
Q 003819 272 ---------TKTLDLIKTE---F-PLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVSTSCSLLHTAV 335 (793)
Q Consensus 272 ---------~~~l~~l~~~---~-p~~k~l~lGvVdgrn~w~ed~~~i~~~i~~~~~~v~~e~l~vspsCgL~hvP~ 335 (793)
..+++...+. . ..+-.+..|+|=|- -|+.+++++.+..+.+ ++++.+-++...+.-.+|.
T Consensus 124 ~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~sg~I~Gl---GEt~ed~~~~l~~lr~-L~~~svpl~~~~p~~~t~~ 196 (279)
T PRK08508 124 KEFFPKICTTHTWEERFQTCENAKEAGLGLCSGGIFGL---GESWEDRISFLKSLAS-LSPHSTPINFFIPNPALPL 196 (279)
T ss_pred HHHhcCCCCCCCHHHHHHHHHHHHHcCCeecceeEEec---CCCHHHHHHHHHHHHc-CCCCEEeeCCcCCCCCCCC
Confidence 1223331110 0 12345666666664 5788888888888765 6666677777666555554
No 192
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=32.79 E-value=7.4e+02 Score=28.86 Aligned_cols=161 Identities=13% Similarity=0.148 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHcCCcEEEEc---CcccccCCCCCcccHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCC--chhHHHHH
Q 003819 614 AIKDEVEDLEKAGITVIQID---EAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSN--FNDIIHSI 688 (793)
Q Consensus 614 al~~ev~~L~~aGv~~IQID---EPal~~~l~l~~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~C~g~--~~~i~~~l 688 (793)
.+-.|++.|.++|++-|.|= =-+...+++. . ..-..+.++.+.+ +++...|.+||.+.. .+++++.+
T Consensus 177 ~Il~ev~~Lv~~G~kEI~L~gqdv~aYG~D~~~------~-~~~l~~Ll~~l~~-I~G~~riR~~~~~P~~~~d~lI~~~ 248 (437)
T COG0621 177 DILKEVKRLVAQGVKEIVLTGQDVNAYGKDLGG------G-KPNLADLLRELSK-IPGIERIRFGSSHPLEFTDDLIEAI 248 (437)
T ss_pred HHHHHHHHHHHCCCeEEEEEEEehhhccccCCC------C-ccCHHHHHHHHhc-CCCceEEEEecCCchhcCHHHHHHH
Confidence 55678999999999966653 2333322221 0 0123455666555 665568999998753 46788888
Q ss_pred HcCC--CcEEEEecCCCChhh----------------HHHhhhc---ccCCCeEeeeeecCCCCCCCCHHHHHHHHHHHH
Q 003819 689 MDMD--ADVITIENSRSDEKL----------------LSVFREG---VKYRAGIGPGVYDIHSPRIPSTEEIADRINKML 747 (793)
Q Consensus 689 ~~l~--~D~isiE~~r~~~~~----------------L~~~~~~---~~~~~~i~~GVvD~~s~~ves~eev~~~i~~al 747 (793)
.+.+ ...+++-.-.++... ++.|+.. ......+.+|.-- ||-|+-.+.++ .+
T Consensus 249 ~~~~kv~~~lHlPvQsGsd~ILk~M~R~yt~e~~~~~i~k~R~~~Pd~~i~tDiIVGFPg------ETeedFe~tl~-lv 321 (437)
T COG0621 249 AETPKVCPHLHLPVQSGSDRILKRMKRGYTVEEYLEIIEKLRAARPDIAISTDIIVGFPG------ETEEDFEETLD-LV 321 (437)
T ss_pred hcCCcccccccCccccCCHHHHHHhCCCcCHHHHHHHHHHHHHhCCCceEeccEEEECCC------CCHHHHHHHHH-HH
Confidence 8865 355555521111112 2333321 1112234444421 45555544433 33
Q ss_pred hhcCCCcEEEcCC---CCCC------CCChhHHHHHHHHHHHHHHHHHHHH
Q 003819 748 AVLESNILWVNPD---CGLK------TRKYSEVKPALSNMVAAAKLLRTQL 789 (793)
Q Consensus 748 ~~i~~~~l~vsPd---CGL~------t~~~~~~~~kL~~mv~aa~~~r~~~ 789 (793)
+.++.+++.+.+= =|=. ..+.+...+-++.|.+..+....+.
T Consensus 322 ~e~~fd~~~~F~YSpRpGTpAa~~~~qvp~~vkkeR~~~L~~l~~~~~~~~ 372 (437)
T COG0621 322 EEVRFDRLHVFKYSPRPGTPAALMPDQVPEEVKKERLRRLQELQQQISAEF 372 (437)
T ss_pred HHhCCCEEeeeecCCCCCCccccCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777766432 1111 1344444677777777777766554
No 193
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=32.04 E-value=4.2e+02 Score=26.47 Aligned_cols=65 Identities=15% Similarity=0.164 Sum_probs=38.2
Q ss_pred HHHHHHHHcCCcEEEEcCcccccCCCCCcccHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCchhHHHHHHcCCCcEE
Q 003819 617 DEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDADVI 696 (793)
Q Consensus 617 ~ev~~L~~aGv~~IQIDEPal~~~l~l~~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~C~g~~~~i~~~l~~l~~D~i 696 (793)
+.+..+.+.|+++||+.++.+. ..++.+.+.. +...+.... ..+.+|- -++...+.++|++
T Consensus 17 ~~~~~~~~~g~~~v~lR~~~~~---------~~~~~~~~~~-l~~~~~~~~--~~l~i~~-------~~~la~~~g~~Gv 77 (196)
T TIGR00693 17 NRVEAALKGGVTLVQLRDKGSN---------TRERLALAEK-LQELCRRYG--VPFIVND-------RVDLALALGADGV 77 (196)
T ss_pred HHHHHHHhcCCCEEEEecCCCC---------HHHHHHHHHH-HHHHHHHhC--CeEEEEC-------HHHHHHHcCCCEE
Confidence 3455677889999999887543 2233333322 333322221 3455552 3566778999999
Q ss_pred EEec
Q 003819 697 TIEN 700 (793)
Q Consensus 697 siE~ 700 (793)
++..
T Consensus 78 Hl~~ 81 (196)
T TIGR00693 78 HLGQ 81 (196)
T ss_pred ecCc
Confidence 9963
No 194
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=31.91 E-value=1.2e+02 Score=32.85 Aligned_cols=62 Identities=24% Similarity=0.306 Sum_probs=39.1
Q ss_pred HHHHHHHcCCcEEEEcCcccccCCCCCcccHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCc-hhHHHHHHcCCCcEE
Q 003819 618 EVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNF-NDIIHSIMDMDADVI 696 (793)
Q Consensus 618 ev~~L~~aGv~~IQIDEPal~~~l~l~~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~C~g~~-~~i~~~l~~l~~D~i 696 (793)
++.+..++|+++|++|.... +-+..++..+ ++.+ .+.+- |-|+. .+-++..+.+++|+|
T Consensus 200 ~~~eAl~agaDiImLDNm~~------------e~~~~av~~l-----~~~~--~~~lE-aSGgIt~~ni~~yA~tGVD~I 259 (280)
T COG0157 200 EAEEALEAGADIIMLDNMSP------------EELKEAVKLL-----GLAG--RALLE-ASGGITLENIREYAETGVDVI 259 (280)
T ss_pred HHHHHHHcCCCEEEecCCCH------------HHHHHHHHHh-----ccCC--ceEEE-EeCCCCHHHHHHHhhcCCCEE
Confidence 45556678999999997432 1122333333 3332 34444 33554 467889999999999
Q ss_pred EEe
Q 003819 697 TIE 699 (793)
Q Consensus 697 siE 699 (793)
|+=
T Consensus 260 S~g 262 (280)
T COG0157 260 SVG 262 (280)
T ss_pred EeC
Confidence 986
No 195
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=31.83 E-value=4.4e+02 Score=28.77 Aligned_cols=92 Identities=14% Similarity=0.163 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHHcCCcEEEEcCc--cc-ccC-CCC---Cc----ccHHHHHHHHHHHHHHHhcCCCCCCeEEEEe
Q 003819 608 CYQIALAIKDEVEDLEKAGITVIQIDEA--AL-REG-LPL---RK----SEQDFYLKWAVHSFRITNCGVQDTTQVHTHM 676 (793)
Q Consensus 608 ~~~lA~al~~ev~~L~~aGv~~IQIDEP--al-~~~-l~l---~~----~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~ 676 (793)
..++...+.+-.+.+.++|++-|+|.-- .| ... .|. +. .+.....++..+.++.+-+.++++..|.+-+
T Consensus 136 i~~~i~~~~~aA~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~d~~i~vri 215 (327)
T cd02803 136 IEQIIEDFAAAARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPDFPVGVRL 215 (327)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCceEEEEe
Confidence 3567777777788888999999999852 11 111 111 11 1122333444444444444444344454443
Q ss_pred CCC----------CchhHHHHHHcCCCcEEEEe
Q 003819 677 CYS----------NFNDIIHSIMDMDADVITIE 699 (793)
Q Consensus 677 C~g----------~~~~i~~~l~~l~~D~isiE 699 (793)
..+ +...+++.+.+.++|.|++-
T Consensus 216 s~~~~~~~g~~~~e~~~la~~l~~~G~d~i~vs 248 (327)
T cd02803 216 SADDFVPGGLTLEEAIEIAKALEEAGVDALHVS 248 (327)
T ss_pred chhccCCCCCCHHHHHHHHHHHHHcCCCEEEeC
Confidence 321 12345677888999999874
No 196
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=31.45 E-value=5.8e+02 Score=27.70 Aligned_cols=113 Identities=21% Similarity=0.200 Sum_probs=64.1
Q ss_pred CCceeeechHHHHhhcccccC-CCChHHHHHHHHHHHHHHHHHHHHcCCcEEEEcCcccccCCCCCcccHHHHHHHHHHH
Q 003819 580 RPMKGMLTGPVTILNWSFVRN-DQPRFETCYQIALAIKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHS 658 (793)
Q Consensus 580 kpvK~~LtGPvTll~~s~~~~-~~~~~e~~~~lA~al~~ev~~L~~aGv~~IQIDEPal~~~l~l~~~~~~~~l~~av~a 658 (793)
+..+|.++-++|- |+.+ ..+ ..++++.++.+.+.||+-|-+-- ...|...+..+++...++.++++
T Consensus 4 ~~~~Gi~~a~vTP----f~~dg~iD--------~~~l~~li~~l~~~Gv~gi~v~G-stGE~~~Lt~eEr~~v~~~~~~~ 70 (296)
T TIGR03249 4 KAGSGLLSFPVTP----FDADGSFD--------EAAYRENIEWLLGYGLEALFAAG-GTGEFFSLTPAEYEQVVEIAVST 70 (296)
T ss_pred cccCceEEeeeCC----cCCCCCcC--------HHHHHHHHHHHHhcCCCEEEECC-CCcCcccCCHHHHHHHHHHHHHH
Confidence 4566777666664 3332 233 24678888899999999777542 12333333333444444444433
Q ss_pred HHHHhcCCCCCCeEEEEeCCCCchhHHHH---HHcCCCcEEEEecC----CCChhhHHHhhh
Q 003819 659 FRITNCGVQDTTQVHTHMCYSNFNDIIHS---IMDMDADVITIENS----RSDEKLLSVFRE 713 (793)
Q Consensus 659 ~~~~~~~v~~~~~I~lH~C~g~~~~i~~~---l~~l~~D~isiE~~----r~~~~~L~~~~~ 713 (793)
+++++.|..|++ ++..+.++. ..++++|++.+=.. .+..+..+.|+.
T Consensus 71 -------~~g~~pvi~gv~-~~t~~ai~~a~~a~~~Gadav~~~pP~y~~~s~~~i~~~f~~ 124 (296)
T TIGR03249 71 -------AKGKVPVYTGVG-GNTSDAIEIARLAEKAGADGYLLLPPYLINGEQEGLYAHVEA 124 (296)
T ss_pred -------hCCCCcEEEecC-ccHHHHHHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHH
Confidence 233456888887 456555443 45799999987522 123444555544
No 197
>PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=30.66 E-value=4.1e+02 Score=30.92 Aligned_cols=63 Identities=16% Similarity=0.158 Sum_probs=41.5
Q ss_pred HHHHHHcCCcEEEEcCcccccCCCCCcccHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCchhHHHHHHcCCCcEEEE
Q 003819 619 VEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDADVITI 698 (793)
Q Consensus 619 v~~L~~aGv~~IQIDEPal~~~l~l~~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~C~g~~~~i~~~l~~l~~D~isi 698 (793)
++.+.++|+++||+-|..+. ..++.+.+..+...+ ..- ++++.++ +-++...++++|++++
T Consensus 223 ve~aL~aGv~~VQLReK~ls---------~~el~~la~~l~~l~-~~~--gv~LiIN-------D~~dlAl~~gAdGVHL 283 (437)
T PRK12290 223 IERLLPLGINTVQLRIKDPQ---------QADLEQQIIRAIALG-REY--NAQVFIN-------DYWQLAIKHQAYGVHL 283 (437)
T ss_pred HHHHHhCCCCEEEEeCCCCC---------HHHHHHHHHHHHHHH-HHh--CCEEEEE-------CHHHHHHHcCCCEEEc
Confidence 66778899999999987753 234555554444332 322 2456666 3466777899999998
Q ss_pred ec
Q 003819 699 EN 700 (793)
Q Consensus 699 E~ 700 (793)
-.
T Consensus 284 GQ 285 (437)
T PRK12290 284 GQ 285 (437)
T ss_pred Ch
Confidence 63
No 198
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=30.25 E-value=7.7e+02 Score=27.08 Aligned_cols=149 Identities=15% Similarity=0.177 Sum_probs=77.7
Q ss_pred HHHHHHHHHHcCCcEEEEcCcccc---cCCCCCc-ccHHHHHHHHHHHHHHHhcCCC-CCCeEEEEeC-C--CCchhHHH
Q 003819 615 IKDEVEDLEKAGITVIQIDEAALR---EGLPLRK-SEQDFYLKWAVHSFRITNCGVQ-DTTQVHTHMC-Y--SNFNDIIH 686 (793)
Q Consensus 615 l~~ev~~L~~aGv~~IQIDEPal~---~~l~l~~-~~~~~~l~~av~a~~~~~~~v~-~~~~I~lH~C-~--g~~~~i~~ 686 (793)
+..-++.++++|+.-|+|.+-... ..++... .+.+ .++.-++.+.+... ++.-|.--+. + ..+++.+.
T Consensus 95 v~r~V~~~~~aGaagi~IEDq~~pK~cg~~~~~~lv~~e----e~~~kI~Aa~~a~~~~d~~IiARTDa~~~~g~deAI~ 170 (292)
T PRK11320 95 IARTVKSMIKAGAAAVHIEDQVGAKRCGHRPNKEIVSQE----EMVDRIKAAVDARTDPDFVIMARTDALAVEGLDAAIE 170 (292)
T ss_pred HHHHHHHHHHcCCeEEEEecCCCccccCCCCCCcccCHH----HHHHHHHHHHHhccCCCeEEEEecCcccccCHHHHHH
Confidence 345578899999999999885431 1111110 1122 23333333333222 2222221111 1 13555555
Q ss_pred H---HHcCCCcEEEEecCCCChhhHHHhhhcccCCCeEeeeeecCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEcCCCCC
Q 003819 687 S---IMDMDADVITIENSRSDEKLLSVFREGVKYRAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLESNILWVNPDCGL 763 (793)
Q Consensus 687 ~---l~~l~~D~isiE~~r~~~~~L~~~~~~~~~~~~i~~GVvD~~s~~ves~eev~~~i~~al~~i~~~~l~vsPdCGL 763 (793)
. -.+.++|++.+|...+ .+.++.|.+.. +..+.+-++....+-..+.+++ ..+|..++...+.
T Consensus 171 Ra~aY~eAGAD~ifi~~~~~-~~~i~~~~~~~--~~Pl~~n~~~~~~~p~~s~~~L--------~~lGv~~v~~~~~--- 236 (292)
T PRK11320 171 RAQAYVEAGADMIFPEAMTE-LEMYRRFADAV--KVPILANITEFGATPLFTTEEL--------ASAGVAMVLYPLS--- 236 (292)
T ss_pred HHHHHHHcCCCEEEecCCCC-HHHHHHHHHhc--CCCEEEEeccCCCCCCCCHHHH--------HHcCCcEEEEChH---
Confidence 4 3579999999997653 44566665422 3334333343222222356654 4567777766443
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHH
Q 003819 764 KTRKYSEVKPALSNMVAAAKLLRT 787 (793)
Q Consensus 764 ~t~~~~~~~~kL~~mv~aa~~~r~ 787 (793)
-....+++|.++++.+++
T Consensus 237 ------~~~aa~~a~~~~~~~l~~ 254 (292)
T PRK11320 237 ------AFRAMNKAAENVYEAIRR 254 (292)
T ss_pred ------HHHHHHHHHHHHHHHHHH
Confidence 235777777777777765
No 199
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=30.06 E-value=4.7e+02 Score=28.16 Aligned_cols=89 Identities=10% Similarity=-0.022 Sum_probs=52.1
Q ss_pred HHHHHHHCCCCEEEeeccccccCCChHHHHHHHHHHHHHHhccCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEEec-
Q 003819 191 VVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLI- 269 (793)
Q Consensus 191 ~l~~L~~aG~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~lp~Vd~l~lD~~- 269 (793)
..+.+.++|++|+.+=+= .....+.+++..+.. ..++.+. |+++.+.++.++++. ++.+.+=-.
T Consensus 43 ~A~~~~~~Ga~~lHvVDL------g~~n~~~i~~i~~~~-----~~~v~vG---GGIr~e~v~~~l~aG-a~rVvIGS~a 107 (253)
T TIGR02129 43 YAKLYKDDGVKGCHVIML------GPNNDDAAKEALHAY-----PGGLQVG---GGINDTNAQEWLDEG-ASHVIVTSWL 107 (253)
T ss_pred HHHHHHHcCCCEEEEEEC------CCCcHHHHHHHHHhC-----CCCEEEe---CCcCHHHHHHHHHcC-CCEEEECcHH
Confidence 455677899999976542 111334444433322 2456555 666556677888898 999888542
Q ss_pred -cC----CCChhhHhhhCCCCCEEEEEEeeCC
Q 003819 270 -RG----TKTLDLIKTEFPLGKYLFAGVVDGR 296 (793)
Q Consensus 270 -~~----~~~l~~l~~~~p~~k~l~lGvVdgr 296 (793)
.. ++.++.+.+.|.+++ ++++| |.|
T Consensus 108 v~~~~i~~~~~~~i~~~fG~~~-Ivvsi-D~k 137 (253)
T TIGR02129 108 FTKGKFDLKRLKEIVSLVGKDR-LIVDL-SCR 137 (253)
T ss_pred HhCCCCCHHHHHHHHHHhCCCC-EEEEE-EEE
Confidence 12 335555555575544 55555 555
No 200
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=29.41 E-value=1.6e+02 Score=30.08 Aligned_cols=95 Identities=14% Similarity=0.069 Sum_probs=45.3
Q ss_pred HHHHHHHCCCCEEEeecccccc-CCChHHHHHHHHHHHHHHhccCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEEec
Q 003819 191 VVAELKAAGATWIQFDEPTLVL-DLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLI 269 (793)
Q Consensus 191 ~l~~L~~aG~~~VQiDEP~L~~-d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~lp~Vd~l~lD~~ 269 (793)
.++...++|+++||+=.--... ..+ .+..++.-..+......+.+++. .+. +.+.+....++ +|++||--.
T Consensus 11 d~~~a~~~Gvd~ig~i~~~~s~R~v~---~~~a~~l~~~~~~~~~~V~v~vn---~~~-~~i~~ia~~~~-~d~Vqlhg~ 82 (203)
T cd00405 11 DALAAAEAGADAIGFIFAPKSPRYVS---PEQAREIVAALPPFVKRVGVFVN---EDL-EEILEIAEELG-LDVVQLHGD 82 (203)
T ss_pred HHHHHHHcCCCEEEEecCCCCCCCCC---HHHHHHHHHhCCCCCcEEEEEeC---CCH-HHHHHHHHhcC-CCEEEECCC
Confidence 4566678999999997422111 111 22222222222110001112111 234 55566777888 999999754
Q ss_pred cCCCChhhHhhhCCCCCEEEEEEe
Q 003819 270 RGTKTLDLIKTEFPLGKYLFAGVV 293 (793)
Q Consensus 270 ~~~~~l~~l~~~~p~~k~l~lGvV 293 (793)
........+++.++.+...++|+-
T Consensus 83 e~~~~~~~l~~~~~~~~i~~i~~~ 106 (203)
T cd00405 83 ESPEYCAQLRARLGLPVIKAIRVK 106 (203)
T ss_pred CCHHHHHHHHhhcCCcEEEEEecC
Confidence 322233334332333334446764
No 201
>cd01096 Alkanal_monooxygenase Alkanal monooxygenase are flavin monoxygenases. Molecular oxygen is activated by reaction with reduced flavin mononucleotide (FMNH2) and reacts with an aldehyde to yield the carboxylic acid, oxidized flavin (FMN) and a blue-green light. Bacterial luciferases are heterodimers made of alpha and beta subunits which are homologous. The single activer center is on the alpha subunit. The alpha subunit has a stretch of 30 amino acid residues that is not present in the beta subunit. The beta subunit does not contain the active site and is required for the formation of the fully active heterodimer. The beta subunit does not contribute anything directly to the active site. Its role is probably to stabilize the high quantum yield conformation of the alpha subunit through interactionbs across the subunit interface.
Probab=29.27 E-value=90 Score=34.22 Aligned_cols=41 Identities=10% Similarity=0.092 Sum_probs=34.4
Q ss_pred CCCHHHHHHHHHHHHhhcCCCcEEEcCCCCCCCCChhHHHHHHH
Q 003819 733 IPSTEEIADRINKMLAVLESNILWVNPDCGLKTRKYSEVKPALS 776 (793)
Q Consensus 733 ves~eev~~~i~~al~~i~~~~l~vsPdCGL~t~~~~~~~~kL~ 776 (793)
+.|||+|+++|++..+..|.+++.+.+++|+ +.+++.+.|+
T Consensus 273 vGtpe~v~~~l~~~~~~~G~~~~~~~~~~~~---~~~~~~~~~~ 313 (315)
T cd01096 273 VGTPEECIEIIQLAIEATGIKNILLSFESMG---SEDEIIASIN 313 (315)
T ss_pred CCCHHHHHHHHHHHHHHhCCCeEEEeccCCC---CHHHHHHHHh
Confidence 6899999999988778889999999888765 7777777765
No 202
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=29.23 E-value=1e+02 Score=33.78 Aligned_cols=65 Identities=18% Similarity=0.280 Sum_probs=38.3
Q ss_pred HHHHHHHHcCCcEEEEcCcccccCCCCCcccHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCchhHHHHHHcCCCcEE
Q 003819 617 DEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDADVI 696 (793)
Q Consensus 617 ~ev~~L~~aGv~~IQIDEPal~~~l~l~~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~C~g~~~~i~~~l~~l~~D~i 696 (793)
+|+.+..++|+++||+|-.. ++ -++.+++.++.. .+ ++.+--..|=-.+.++.+.++++|+|
T Consensus 207 eea~eA~~~GaD~I~LDn~~-----------~e-~l~~av~~~~~~----~~--~i~leAsGGIt~~ni~~ya~tGvD~I 268 (288)
T PRK07428 207 EQVQEALEYGADIIMLDNMP-----------VD-LMQQAVQLIRQQ----NP--RVKIEASGNITLETIRAVAETGVDYI 268 (288)
T ss_pred HHHHHHHHcCCCEEEECCCC-----------HH-HHHHHHHHHHhc----CC--CeEEEEECCCCHHHHHHHHHcCCCEE
Confidence 35555667999999999422 22 233334433321 11 23333342333467788899999999
Q ss_pred EEe
Q 003819 697 TIE 699 (793)
Q Consensus 697 siE 699 (793)
++=
T Consensus 269 svg 271 (288)
T PRK07428 269 SSS 271 (288)
T ss_pred EEc
Confidence 986
No 203
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=29.21 E-value=5.6e+02 Score=28.64 Aligned_cols=96 Identities=13% Similarity=0.116 Sum_probs=53.7
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHcCCcEEEEcCcc---cccCCCC----Cc----ccHHHHHHHHHHHHHHHhcCCCCCC
Q 003819 602 QPRFETCYQIALAIKDEVEDLEKAGITVIQIDEAA---LREGLPL----RK----SEQDFYLKWAVHSFRITNCGVQDTT 670 (793)
Q Consensus 602 ~~~~e~~~~lA~al~~ev~~L~~aGv~~IQIDEPa---l~~~l~l----~~----~~~~~~l~~av~a~~~~~~~v~~~~ 670 (793)
.+.+| .+++.+.+.+-++.+.++|.+.|+|.-.- |...|.. +. .+...-.+...+.++.+-+.++++.
T Consensus 127 mt~~e-I~~i~~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~aIR~~vG~d~ 205 (353)
T cd02930 127 LSEEE-IEQTIEDFARCAALAREAGYDGVEIMGSEGYLINQFLAPRTNKRTDEWGGSFENRMRFPVEIVRAVRAAVGEDF 205 (353)
T ss_pred CCHHH-HHHHHHHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCccCCCcCccCCCHHHHhHHHHHHHHHHHHHcCCCc
Confidence 34433 34667777777888889999999995310 1111111 11 1122234444444554445555455
Q ss_pred eEEEEeCCC-------C---chhHHHHHHcCCCcEEEE
Q 003819 671 QVHTHMCYS-------N---FNDIIHSIMDMDADVITI 698 (793)
Q Consensus 671 ~I~lH~C~g-------~---~~~i~~~l~~l~~D~isi 698 (793)
.|.+-+..- + .-.+.+.|.++++|.|++
T Consensus 206 ~v~iRi~~~D~~~~g~~~~e~~~i~~~Le~~G~d~i~v 243 (353)
T cd02930 206 IIIYRLSMLDLVEGGSTWEEVVALAKALEAAGADILNT 243 (353)
T ss_pred eEEEEecccccCCCCCCHHHHHHHHHHHHHcCCCEEEe
Confidence 555544421 1 125667778889999988
No 204
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=29.19 E-value=7.4e+02 Score=26.56 Aligned_cols=136 Identities=10% Similarity=0.065 Sum_probs=79.8
Q ss_pred HHHHHHHHCCCCEEEeeccccccCCC-h----HHHHHHHHHHHHHHhccCCCcEEEEeccCCCchhhHHHHhcCCCccEE
Q 003819 190 EVVAELKAAGATWIQFDEPTLVLDLD-S----HKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGF 264 (793)
Q Consensus 190 ~~l~~L~~aG~~~VQiDEP~L~~d~~-~----~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~lp~Vd~l 264 (793)
++.+.|.++|+++|.+==|.-..... . -+.+.+++...... ++.++....--+....+-++...+.. |+.+
T Consensus 24 ~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~~~~~~~~~~~~~~~~l~~a~~~g-v~~i 99 (266)
T cd07944 24 AIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSK---GNTKIAVMVDYGNDDIDLLEPASGSV-VDMI 99 (266)
T ss_pred HHHHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhc---cCCEEEEEECCCCCCHHHHHHHhcCC-cCEE
Confidence 45566889999999887555321100 0 01223333322221 13455443332322012344456777 9998
Q ss_pred EEEeccCCCChhhHhh---hC-CCCCEEEEEEeeCCCCCCCCHHHHHHHHHHHhhhcCCCcEEEeCCCCCcccccc
Q 003819 265 GFDLIRGTKTLDLIKT---EF-PLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVSTSCSLLHTAVD 336 (793)
Q Consensus 265 ~lD~~~~~~~l~~l~~---~~-p~~k~l~lGvVdgrn~w~ed~~~i~~~i~~~~~~v~~e~l~vspsCgL~hvP~~ 336 (793)
++=+.. ..++.+.+ .. ..+..+.+++.|+-. .+++.+.+.++++.+ .|++++++.-+.|.+ .|.+
T Consensus 100 ri~~~~--~~~~~~~~~i~~ak~~G~~v~~~~~~a~~---~~~~~~~~~~~~~~~-~g~~~i~l~DT~G~~-~P~~ 168 (266)
T cd07944 100 RVAFHK--HEFDEALPLIKAIKEKGYEVFFNLMAISG---YSDEELLELLELVNE-IKPDVFYIVDSFGSM-YPED 168 (266)
T ss_pred EEeccc--ccHHHHHHHHHHHHHCCCeEEEEEEeecC---CCHHHHHHHHHHHHh-CCCCEEEEecCCCCC-CHHH
Confidence 886543 23443332 11 135679999998754 688999999999876 588999999999987 3644
No 205
>COG1031 Uncharacterized Fe-S oxidoreductase [Energy production and conversion]
Probab=29.07 E-value=5.9e+02 Score=29.82 Aligned_cols=115 Identities=17% Similarity=0.231 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHCCCCEEEeec--cccccCC-------ChHHHHHHHHHHHHHHhccCCCcE---------EEEeccCCCc
Q 003819 187 VYKEVVAELKAAGATWIQFDE--PTLVLDL-------DSHKLQAFSDAYSELQSSLSGLNV---------LIETYFADVP 248 (793)
Q Consensus 187 ~Y~~~l~~L~~aG~~~VQiDE--P~L~~d~-------~~~~~~~~~~~y~~l~~~~~~~~i---------~l~tyfg~~~ 248 (793)
...++++.||++||+...|-- -++++.. +..-.+++++.|..+.+..|+++. .+++|=...
T Consensus 219 ~Vv~EVkaLY~~GvrhFRlGRQ~difsy~~~~~g~e~P~PnPealekL~~Gir~~AP~l~tLHiDNaNP~tIa~yp~eS- 297 (560)
T COG1031 219 DVVEEVKALYRAGVRHFRLGRQADIFSYGADDNGGEVPRPNPEALEKLFRGIRNVAPNLKTLHIDNANPATIARYPEES- 297 (560)
T ss_pred HHHHHHHHHHHhccceeeeccccceeeecccccCCCCCCCCHHHHHHHHHHHHhhCCCCeeeeecCCCchhhhcChHHH-
Confidence 345789999999999886643 2444421 122378999999999887655432 223343322
Q ss_pred hhhHHHHh--cCCC-ccEEEEEeccCCCChhhHhhhCCCCCEEEEEEeeCCCCCCCCHHHHHHHHHHHhhhcCCCcEE
Q 003819 249 AETYKILT--SLKG-VTGFGFDLIRGTKTLDLIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVV 323 (793)
Q Consensus 249 ~~~~~~l~--~lp~-Vd~l~lD~~~~~~~l~~l~~~~p~~k~l~lGvVdgrn~w~ed~~~i~~~i~~~~~~v~~e~l~ 323 (793)
.++++.|. .+|| |.++++|-.+. .+. -+|.-..++|++++.|+-+.+ +|..+-|
T Consensus 298 r~i~K~ivky~TpGnVaAfGlEsaDp-----~V~---------------r~NnL~~spEEvl~AV~ivn~-vG~~rg~ 354 (560)
T COG1031 298 REIAKVIVKYGTPGNVAAFGLESADP-----RVA---------------RKNNLNASPEEVLEAVEIVNE-VGGGRGY 354 (560)
T ss_pred HHHHHHHHhhCCCCceeeeeccccCH-----HHH---------------hhccccCCHHHHHHHHHHHHH-hcCccCc
Confidence 45666664 3443 66676663221 011 125557899999988877754 5655544
No 206
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=28.40 E-value=8.9e+02 Score=27.23 Aligned_cols=130 Identities=11% Similarity=0.091 Sum_probs=79.2
Q ss_pred HHHHHHHHCCCCEEEeeccccccCCChHHHHHHHHHHHHHHhccCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEEec
Q 003819 190 EVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLI 269 (793)
Q Consensus 190 ~~l~~L~~aG~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~lp~Vd~l~lD~~ 269 (793)
++++.|.++|++.|.+==|... +.+.+.++..- +..+..++ .++ .....+-++...+.. ++.+++=+.
T Consensus 27 ~ia~~L~~~Gv~~IEvG~p~~~----~~~~e~i~~i~----~~~~~~~i--~~~-~r~~~~di~~a~~~g-~~~i~i~~~ 94 (365)
T TIGR02660 27 AIARALDEAGVDELEVGIPAMG----EEERAVIRAIV----ALGLPARL--MAW-CRARDADIEAAARCG-VDAVHISIP 94 (365)
T ss_pred HHHHHHHHcCCCEEEEeCCCCC----HHHHHHHHHHH----HcCCCcEE--EEE-cCCCHHHHHHHHcCC-cCEEEEEEc
Confidence 3556688899999999766543 33444444432 22112233 332 211133456677888 998888765
Q ss_pred cCC------------CChhhHhhh----CCCCCEEEEEEeeCCCCCCCCHHHHHHHHHHHhhhcCCCcEEEeCCCCCccc
Q 003819 270 RGT------------KTLDLIKTE----FPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVSTSCSLLHT 333 (793)
Q Consensus 270 ~~~------------~~l~~l~~~----~p~~k~l~lGvVdgrn~w~ed~~~i~~~i~~~~~~v~~e~l~vspsCgL~hv 333 (793)
.+. +.++.+.+. -..+..+.++.-| ..+.|++.+.+.++.+.+ .|++++.+.-..|.+ .
T Consensus 95 ~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~~~~ed---~~r~~~~~l~~~~~~~~~-~Ga~~i~l~DT~G~~-~ 169 (365)
T TIGR02660 95 VSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVSVGGED---ASRADPDFLVELAEVAAE-AGADRFRFADTVGIL-D 169 (365)
T ss_pred cCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEEEeecC---CCCCCHHHHHHHHHHHHH-cCcCEEEEcccCCCC-C
Confidence 321 112222110 1135678888776 467789999999998876 688999999999976 3
Q ss_pred ccc
Q 003819 334 AVD 336 (793)
Q Consensus 334 P~~ 336 (793)
|..
T Consensus 170 P~~ 172 (365)
T TIGR02660 170 PFS 172 (365)
T ss_pred HHH
Confidence 543
No 207
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=28.33 E-value=1.5e+02 Score=32.41 Aligned_cols=62 Identities=21% Similarity=0.278 Sum_probs=37.9
Q ss_pred HHHHHHHHcCCcEEEEcCcccccCCCCCcccHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCchhHHHHHHcCCCcEE
Q 003819 617 DEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDADVI 696 (793)
Q Consensus 617 ~ev~~L~~aGv~~IQIDEPal~~~l~l~~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~C~g~~~~i~~~l~~l~~D~i 696 (793)
+++.+..++|+++||+|..... -+..++... ++ +..+-...|=-.+.+...+.+++|+|
T Consensus 204 ee~~ea~~~gaDiImLDn~s~e------------~l~~av~~~-------~~--~~~leaSGgI~~~ni~~yA~tGVD~I 262 (281)
T PRK06543 204 DQIEPVLAAGVDTIMLDNFSLD------------DLREGVELV-------DG--RAIVEASGNVNLNTVGAIASTGVDVI 262 (281)
T ss_pred HHHHHHHhcCCCEEEECCCCHH------------HHHHHHHHh-------CC--CeEEEEECCCCHHHHHHHHhcCCCEE
Confidence 3455556789999999974422 122333332 21 12344443333466788899999999
Q ss_pred EEe
Q 003819 697 TIE 699 (793)
Q Consensus 697 siE 699 (793)
|+=
T Consensus 263 s~g 265 (281)
T PRK06543 263 SVG 265 (281)
T ss_pred EeC
Confidence 986
No 208
>PRK15124 2'-5' RNA ligase; Provisional
Probab=28.30 E-value=3.5e+02 Score=26.95 Aligned_cols=95 Identities=17% Similarity=0.265 Sum_probs=52.3
Q ss_pred ccCCChHHHHHHHHHHHHHHhc-----cCCCcEEEEec-cCCCchhhHH----HHhcCCCccEEEEEeccCCCChhhHhh
Q 003819 211 VLDLDSHKLQAFSDAYSELQSS-----LSGLNVLIETY-FADVPAETYK----ILTSLKGVTGFGFDLIRGTKTLDLIKT 280 (793)
Q Consensus 211 ~~d~~~~~~~~~~~~y~~l~~~-----~~~~~i~l~ty-fg~~~~~~~~----~l~~lp~Vd~l~lD~~~~~~~l~~l~~ 280 (793)
+.+++++..+.+.+....+... ++.-+++|+-. .|+++.+.++ .+.++. ...+.+.+..- +
T Consensus 10 Al~~p~~~~~~l~~~~~~~~~~~~~rwv~~~nlHiTL~FlG~v~~~~~~~l~~~l~~~~-~~pF~l~l~~~-g------- 80 (176)
T PRK15124 10 AIDLPDEIRQQIIHWRATHFPPEAGRPVAAANLHLTLAFLGEVSAEKQQALSQLAGRIR-QPGFTLTLDDA-G------- 80 (176)
T ss_pred EeCCCHHHHHHHHHHHHHhccccCcccccccccEEEEEecCCCCHHHHHHHHHHHHhcc-cCCeEEEECcc-c-------
Confidence 4455555555555555544221 11125566654 4777533333 333444 55577776541 1
Q ss_pred hCCCCCEEEEEEeeCCCCCCCCHHHHHHHHHHHhhhcC
Q 003819 281 EFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVG 318 (793)
Q Consensus 281 ~~p~~k~l~lGvVdgrn~w~ed~~~i~~~i~~~~~~v~ 318 (793)
.||..++|.+|+-.+ .+.+..+.+.|++++...|
T Consensus 81 ~Fp~prvlwlg~~~~----~~~L~~L~~~l~~~l~~~G 114 (176)
T PRK15124 81 QWPRSRVVWLGMRQP----PRGLLQLANMLRSQAARSG 114 (176)
T ss_pred CcCCCCEEEEEcCCC----CHHHHHHHHHHHHHHHHcC
Confidence 256568999999544 2457777777877766444
No 209
>PRK06256 biotin synthase; Validated
Probab=28.21 E-value=8.3e+02 Score=26.83 Aligned_cols=137 Identities=12% Similarity=0.093 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHcCCcEEEEcCcccccCCCCCcccHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCc-hhHHHHHHcCC
Q 003819 614 AIKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNF-NDIIHSIMDMD 692 (793)
Q Consensus 614 al~~ev~~L~~aGv~~IQIDEPal~~~l~l~~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~C~g~~-~~i~~~l~~l~ 692 (793)
.+.++++.+.+.|+..+.+-- .+-.... ..+++..+.++.+.+.. .+.++++.|-. .+.+..|.+.+
T Consensus 95 eI~~~~~~~~~~g~~~~~l~~----~g~~p~~----~~~~~~~e~i~~i~~~~----~i~~~~~~g~l~~e~l~~LkeaG 162 (336)
T PRK06256 95 ELIEAAKEAIEEGAGTFCIVA----SGRGPSG----KEVDQVVEAVKAIKEET----DLEICACLGLLTEEQAERLKEAG 162 (336)
T ss_pred HHHHHHHHHHHCCCCEEEEEe----cCCCCCc----hHHHHHHHHHHHHHhcC----CCcEEecCCcCCHHHHHHHHHhC
Confidence 344456667778986544421 0110010 11344455555544332 23444454433 47788899999
Q ss_pred CcEEEE--ecCC--------C-C-hhhHHHhhhcccCCCeEeeeeecCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEc--
Q 003819 693 ADVITI--ENSR--------S-D-EKLLSVFREGVKYRAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLESNILWVN-- 758 (793)
Q Consensus 693 ~D~isi--E~~r--------~-~-~~~L~~~~~~~~~~~~i~~GVvD~~s~~ves~eev~~~i~~al~~i~~~~l~vs-- 758 (793)
++.+++ |++. . . .+.++.++.....+-.+..|++=+. -|+.+++.+.+..+ +.++++.+.++
T Consensus 163 ~~~v~~~lEts~~~~~~i~~~~t~~~~i~~i~~a~~~Gi~v~~~~I~Gl---gEt~ed~~~~~~~l-~~l~~~~v~i~~l 238 (336)
T PRK06256 163 VDRYNHNLETSRSYFPNVVTTHTYEDRIDTCEMVKAAGIEPCSGGIIGM---GESLEDRVEHAFFL-KELDADSIPINFL 238 (336)
T ss_pred CCEEecCCccCHHHHhhcCCCCCHHHHHHHHHHHHHcCCeeccCeEEeC---CCCHHHHHHHHHHH-HhCCCCEEeeccc
Confidence 998875 4311 0 1 1112333221112334565655554 37899988888755 45677766554
Q ss_pred ---CCCCCCCC
Q 003819 759 ---PDCGLKTR 766 (793)
Q Consensus 759 ---PdCGL~t~ 766 (793)
|+..|...
T Consensus 239 ~P~pGT~l~~~ 249 (336)
T PRK06256 239 NPIPGTPLENH 249 (336)
T ss_pred ccCCCCCCCCC
Confidence 45545443
No 210
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=28.13 E-value=4.8e+02 Score=26.99 Aligned_cols=146 Identities=14% Similarity=0.201 Sum_probs=85.0
Q ss_pred HHHHHHHHCCCCEEEeeccccccCCChHHHHHHHHHHHHHHhccCCCcEEEEeccC--CCchhhHHHHhcCCCccEEEEE
Q 003819 190 EVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFA--DVPAETYKILTSLKGVTGFGFD 267 (793)
Q Consensus 190 ~~l~~L~~aG~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg--~~~~~~~~~l~~lp~Vd~l~lD 267 (793)
++++.|.++|++.|.+==|.. .+.+.+.+++.-+.+.+ .++...+... ++ ...++.+.... +|.+++=
T Consensus 18 ~i~~~L~~~Gv~~iEvg~~~~----~~~~~~~v~~~~~~~~~----~~~~~~~~~~~~~i-~~~~~~~~~~g-~~~i~i~ 87 (237)
T PF00682_consen 18 EIAKALDEAGVDYIEVGFPFA----SEDDFEQVRRLREALPN----ARLQALCRANEEDI-ERAVEAAKEAG-IDIIRIF 87 (237)
T ss_dssp HHHHHHHHHTTSEEEEEHCTS----SHHHHHHHHHHHHHHHS----SEEEEEEESCHHHH-HHHHHHHHHTT-SSEEEEE
T ss_pred HHHHHHHHhCCCEEEEccccc----CHHHHHHhhhhhhhhcc----cccceeeeehHHHH-HHHHHhhHhcc-CCEEEec
Confidence 355668888999999984443 34456666665555543 2333322222 22 33344555677 8888877
Q ss_pred eccCC------------CChhhHhhh--C--CCCCEEEEEEeeCCCCCCCCHHHHHHHHHHHhhhcCCCcEEEeCCCCCc
Q 003819 268 LIRGT------------KTLDLIKTE--F--PLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVSTSCSLL 331 (793)
Q Consensus 268 ~~~~~------------~~l~~l~~~--~--p~~k~l~lGvVdgrn~w~ed~~~i~~~i~~~~~~v~~e~l~vspsCgL~ 331 (793)
+.-+. +.++.+.+. + ..+..+.+|+.|. .+.+++.+.+.++.+.+. |.+.+++.-+-|..
T Consensus 88 ~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~---~~~~~~~~~~~~~~~~~~-g~~~i~l~Dt~G~~ 163 (237)
T PF00682_consen 88 ISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCEDA---SRTDPEELLELAEALAEA-GADIIYLADTVGIM 163 (237)
T ss_dssp EETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTT---GGSSHHHHHHHHHHHHHH-T-SEEEEEETTS-S
T ss_pred CcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCcccc---ccccHHHHHHHHHHHHHc-CCeEEEeeCccCCc
Confidence 64321 013332221 1 1356788888765 456788888888888664 78999999888887
Q ss_pred ccccccccccCCcHHHHhHHHHHHHHHHH
Q 003819 332 HTAVDLENETKLDQEIKSWLAFAAQKVVE 360 (793)
Q Consensus 332 hvP~~~~~E~~l~~~~~~~lafA~qKl~E 360 (793)
. |. ++.+.++..++.+.+
T Consensus 164 ~-P~----------~v~~lv~~~~~~~~~ 181 (237)
T PF00682_consen 164 T-PE----------DVAELVRALREALPD 181 (237)
T ss_dssp --HH----------HHHHHHHHHHHHSTT
T ss_pred C-HH----------HHHHHHHHHHHhccC
Confidence 3 53 445555555554443
No 211
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=28.06 E-value=5.3e+02 Score=27.62 Aligned_cols=93 Identities=18% Similarity=0.164 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHcCCcEEEEcCcccccCCCCCcccHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCchhHHH---HHH
Q 003819 613 LAIKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIH---SIM 689 (793)
Q Consensus 613 ~al~~ev~~L~~aGv~~IQIDEPal~~~l~l~~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~C~g~~~~i~~---~l~ 689 (793)
.++++.++.|.++|++-|-+-- ...|...+...++...++.+++. +.+++.|..+++-.+..+.++ ...
T Consensus 21 ~~~~~~i~~l~~~Gv~gl~v~G-stGE~~~lt~~Er~~l~~~~~~~-------~~~~~~vi~gv~~~~~~~~~~~a~~a~ 92 (284)
T cd00950 21 DALERLIEFQIENGTDGLVVCG-TTGESPTLSDEEHEAVIEAVVEA-------VNGRVPVIAGTGSNNTAEAIELTKRAE 92 (284)
T ss_pred HHHHHHHHHHHHcCCCEEEECC-CCcchhhCCHHHHHHHHHHHHHH-------hCCCCcEEeccCCccHHHHHHHHHHHH
Confidence 4677888889999999777652 23343333333333333333332 223456888888556655544 456
Q ss_pred cCCCcEEEEecC----CCChhhHHHhhh
Q 003819 690 DMDADVITIENS----RSDEKLLSVFRE 713 (793)
Q Consensus 690 ~l~~D~isiE~~----r~~~~~L~~~~~ 713 (793)
++++|++.+=.. -++.+.++.+++
T Consensus 93 ~~G~d~v~~~~P~~~~~~~~~l~~~~~~ 120 (284)
T cd00950 93 KAGADAALVVTPYYNKPSQEGLYAHFKA 120 (284)
T ss_pred HcCCCEEEEcccccCCCCHHHHHHHHHH
Confidence 899998887632 123444555544
No 212
>TIGR03558 oxido_grp_1 luciferase family oxidoreductase, group 1. The Pfam domain family pfam00296 is named for luciferase-like monooxygenases, but the family also contains several coenzyme F420-dependent enzymes. This protein family represents a well-resolved clade within family pfam00296 and shows no restriction to coenzyme F420-positive species, unlike some other clades within pfam00296.
Probab=27.80 E-value=87 Score=34.45 Aligned_cols=45 Identities=9% Similarity=0.085 Sum_probs=35.4
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCcEEEcCCCCCCCCChhHHHHHHHHHHH
Q 003819 732 RIPSTEEIADRINKMLAVLESNILWVNPDCGLKTRKYSEVKPALSNMVA 780 (793)
Q Consensus 732 ~ves~eev~~~i~~al~~i~~~~l~vsPdCGL~t~~~~~~~~kL~~mv~ 780 (793)
-+.|||+|+++|++..+..|.+++++.|+. .+.++..+.++.+.+
T Consensus 278 iiGspe~v~~~l~~~~~~~G~d~~~~~~~~----~~~~~~~~s~~l~a~ 322 (323)
T TIGR03558 278 IVGSPETVREQLEALAERTGADELMVTTPI----YDHEARLRSYELLAE 322 (323)
T ss_pred EEcCHHHHHHHHHHHHHHHCCCEEEEECCC----CCHHHHHHHHHHHhc
Confidence 357899999999998888899999998872 456666777776554
No 213
>PRK10812 putative DNAse; Provisional
Probab=27.75 E-value=7.8e+02 Score=26.37 Aligned_cols=83 Identities=11% Similarity=0.053 Sum_probs=49.8
Q ss_pred CeEEEEeCCCCchhHHHHHHcCCCc---EEEEecCCCChhhHHHhhhcccCCCeEeeeeecCCCCCCCCHHHHHHHHHHH
Q 003819 670 TQVHTHMCYSNFNDIIHSIMDMDAD---VITIENSRSDEKLLSVFREGVKYRAGIGPGVYDIHSPRIPSTEEIADRINKM 746 (793)
Q Consensus 670 ~~I~lH~C~g~~~~i~~~l~~l~~D---~isiE~~r~~~~~L~~~~~~~~~~~~i~~GVvD~~s~~ves~eev~~~i~~a 746 (793)
..|.+|+ .+...++++.|.+.+++ ++ +-.-.++.+.++.+.+ .+-.+++|-+-+. .+ .+.++++
T Consensus 125 ~Pv~iH~-r~a~~~~l~iL~~~~~~~~~~v-~H~fsG~~~~a~~~~~---~G~~is~~g~~t~----~~----~~~~~~~ 191 (265)
T PRK10812 125 KPVIVHT-RDARADTLAILREEKVTDCGGV-LHCFTEDRETAGKLLD---LGFYISFSGIVTF----RN----AEQLRDA 191 (265)
T ss_pred CCeEEEe-eCchHHHHHHHHhhcCCCCCEE-EEeecCCHHHHHHHHH---CCCEEEECeeeec----Cc----cHHHHHH
Confidence 4588994 45667888877765442 22 2211234555655554 2334555432221 11 2456777
Q ss_pred HhhcCCCcEEEcCCCCCCC
Q 003819 747 LAVLESNILWVNPDCGLKT 765 (793)
Q Consensus 747 l~~i~~~~l~vsPdCGL~t 765 (793)
++.+|.+++.+.+||...+
T Consensus 192 ~~~ipldrlLlETD~P~~~ 210 (265)
T PRK10812 192 ARYVPLDRLLVETDSPYLA 210 (265)
T ss_pred HHhCChhhEEEecCCCCCC
Confidence 8889999999999998763
No 214
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=27.68 E-value=1.9e+02 Score=30.19 Aligned_cols=145 Identities=21% Similarity=0.277 Sum_probs=79.7
Q ss_pred chhHHHHHHhcCCCCceeeechHHHHhhcccccCCCChHHHHHHHHHHHHHHHHHHHHcCCcEEEEcCcccccCCCCCcc
Q 003819 567 TVFWSSMAQSMTKRPMKGMLTGPVTILNWSFVRNDQPRFETCYQIALAIKDEVEDLEKAGITVIQIDEAALREGLPLRKS 646 (793)
Q Consensus 567 ~~~~~~~aq~~t~kpvK~~LtGPvTll~~s~~~~~~~~~e~~~~lA~al~~ev~~L~~aGv~~IQIDEPal~~~l~l~~~ 646 (793)
+++.++..+..++.|+-|.+ -+++.+. +. ......+||.+|.++|+++|-+|-.. |. |+
T Consensus 54 gv~dIkai~~~v~vPIIGIi-----------Krd~~~s-~v---~ITptlkeVd~L~~~Ga~IIA~DaT~-R~----RP- 112 (229)
T COG3010 54 GVEDIKAIRAVVDVPIIGII-----------KRDYPDS-PV---RITPTLKEVDALAEAGADIIAFDATD-RP----RP- 112 (229)
T ss_pred chhhHHHHHhhCCCCeEEEE-----------ecCCCCC-Cc---eecccHHHHHHHHHCCCcEEEeeccc-CC----CC-
Confidence 46677777777777766653 1222110 00 01245678999999999999999632 21 22
Q ss_pred cHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCchhHHHHHHcCCCcEEEEecC----------CCChhhHHHhhhccc
Q 003819 647 EQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDADVITIENS----------RSDEKLLSVFREGVK 716 (793)
Q Consensus 647 ~~~~~l~~av~a~~~~~~~v~~~~~I~lH~C~g~~~~i~~~l~~l~~D~isiE~~----------r~~~~~L~~~~~~~~ 716 (793)
++-++..+.. .+...++.+.-| +++++.+ .-.++++|.|+==.+ ..++++++.+.+ .+
T Consensus 113 --~~~~~~~i~~-------~k~~~~l~MAD~-St~ee~l-~a~~~G~D~IGTTLsGYT~~~~~~~~pDf~lvk~l~~-~~ 180 (229)
T COG3010 113 --DGDLEELIAR-------IKYPGQLAMADC-STFEEGL-NAHKLGFDIIGTTLSGYTGYTEKPTEPDFQLVKQLSD-AG 180 (229)
T ss_pred --cchHHHHHHH-------hhcCCcEEEecc-CCHHHHH-HHHHcCCcEEecccccccCCCCCCCCCcHHHHHHHHh-CC
Confidence 2112222222 222357888889 7887765 345778887764321 125566666654 11
Q ss_pred CCCeEeeeeecCCCCCCCCHHHHHHHHHHHHhhcCCCcEEE
Q 003819 717 YRAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLESNILWV 757 (793)
Q Consensus 717 ~~~~i~~GVvD~~s~~ves~eev~~~i~~al~~i~~~~l~v 757 (793)
-..|.=|-| .||+..++.++ +|..-+.|
T Consensus 181 -~~vIAEGr~-------~tP~~Ak~a~~-----~Ga~aVvV 208 (229)
T COG3010 181 -CRVIAEGRY-------NTPEQAKKAIE-----IGADAVVV 208 (229)
T ss_pred -CeEEeeCCC-------CCHHHHHHHHH-----hCCeEEEE
Confidence 124555655 46776544333 34445555
No 215
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=27.36 E-value=1.6e+02 Score=32.28 Aligned_cols=65 Identities=9% Similarity=0.003 Sum_probs=39.3
Q ss_pred HHHHHHHHcCCcEEEEcCcccccCCCCCcccHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCchhHHHHHHcCCCcEE
Q 003819 617 DEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDADVI 696 (793)
Q Consensus 617 ~ev~~L~~aGv~~IQIDEPal~~~l~l~~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~C~g~~~~i~~~l~~l~~D~i 696 (793)
+++++..++|+++||+|.... +-+..++...+ ... .++.+-...|=-.+.+..+..+++|+|
T Consensus 200 eqa~ea~~agaDiI~LDn~~~------------e~l~~av~~~~----~~~--~~~~leaSGGI~~~ni~~yA~tGvD~I 261 (284)
T PRK06096 200 KEAIAALRAQPDVLQLDKFSP------------QQATEIAQIAP----SLA--PHCTLSLAGGINLNTLKNYADCGIRLF 261 (284)
T ss_pred HHHHHHHHcCCCEEEECCCCH------------HHHHHHHHHhh----ccC--CCeEEEEECCCCHHHHHHHHhcCCCEE
Confidence 345556689999999986332 12333444332 111 134455553433467888999999999
Q ss_pred EEe
Q 003819 697 TIE 699 (793)
Q Consensus 697 siE 699 (793)
+.=
T Consensus 262 s~g 264 (284)
T PRK06096 262 ITS 264 (284)
T ss_pred EEC
Confidence 875
No 216
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=27.32 E-value=3.9e+02 Score=31.47 Aligned_cols=64 Identities=16% Similarity=0.205 Sum_probs=38.7
Q ss_pred HHHHHHHcCCcEEEEcCcccccCCCCCcccHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCchhHHHHHHcCCCcEEE
Q 003819 618 EVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDADVIT 697 (793)
Q Consensus 618 ev~~L~~aGv~~IQIDEPal~~~l~l~~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~C~g~~~~i~~~l~~l~~D~is 697 (793)
.++.+.++|+.+||+.++.+. ...+.+.+..... .+... .+.+.+| +-++...+.++|+++
T Consensus 312 ~l~~~l~~Gv~~vqlR~k~~~---------~~~~~~~a~~l~~-~~~~~--~~~liin-------d~~~lA~~~~adGvH 372 (502)
T PLN02898 312 AVRAAIEGGATIVQLREKEAE---------TREFIEEAKACLA-ICRSY--GVPLLIN-------DRVDVALACDADGVH 372 (502)
T ss_pred HHHHHHHcCCCEEEEccCCCC---------HHHHHHHHHHHHH-HHHHh--CCEEEEc-------ChHHHHHhcCCCEEE
Confidence 356677899999999987643 2234444433333 33322 2456665 235556678889998
Q ss_pred Eec
Q 003819 698 IEN 700 (793)
Q Consensus 698 iE~ 700 (793)
+..
T Consensus 373 l~~ 375 (502)
T PLN02898 373 LGQ 375 (502)
T ss_pred eCh
Confidence 863
No 217
>PRK09875 putative hydrolase; Provisional
Probab=27.10 E-value=8.6e+02 Score=26.63 Aligned_cols=89 Identities=11% Similarity=0.111 Sum_probs=50.6
Q ss_pred CeEEEEeCCCC-chhHHHHHHcCCC--cEEEEecCC--CChhhHHHhhhcccCCCeEeeeeecC-CCCCCCCHHHHHHHH
Q 003819 670 TQVHTHMCYSN-FNDIIHSIMDMDA--DVITIENSR--SDEKLLSVFREGVKYRAGIGPGVYDI-HSPRIPSTEEIADRI 743 (793)
Q Consensus 670 ~~I~lH~C~g~-~~~i~~~l~~l~~--D~isiE~~r--~~~~~L~~~~~~~~~~~~i~~GVvD~-~s~~ves~eev~~~i 743 (793)
..|++|+..|+ -.++++.+.+.++ +.+.+.... .+.+.+..+.+ .+..++.-.. +....++ ++..+.|
T Consensus 153 ~pi~~Ht~~~~~g~e~l~il~e~Gvd~~rvvi~H~d~~~d~~~~~~l~~-----~G~~l~fD~~g~~~~~pd-~~r~~~i 226 (292)
T PRK09875 153 RPISTHTSFSTMGLEQLALLQAHGVDLSRVTVGHCDLKDNLDNILKMID-----LGAYVQFDTIGKNSYYPD-EKRIAML 226 (292)
T ss_pred CcEEEcCCCccchHHHHHHHHHcCcCcceEEEeCCCCCCCHHHHHHHHH-----cCCEEEeccCCCcccCCH-HHHHHHH
Confidence 35999998874 3356777877777 778877432 24444444444 2222222110 1111222 3455556
Q ss_pred HHHHhhcC-CCcEEEcCCCCCCC
Q 003819 744 NKMLAVLE-SNILWVNPDCGLKT 765 (793)
Q Consensus 744 ~~al~~i~-~~~l~vsPdCGL~t 765 (793)
....+. | .+|+++|.|-|-++
T Consensus 227 ~~L~~~-Gy~drilLS~D~~~~~ 248 (292)
T PRK09875 227 HALRDR-GLLNRVMLSMDITRRS 248 (292)
T ss_pred HHHHhc-CCCCeEEEeCCCCCcc
Confidence 555553 5 79999999987664
No 218
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=27.01 E-value=7.8e+02 Score=26.35 Aligned_cols=65 Identities=17% Similarity=0.189 Sum_probs=38.7
Q ss_pred HHHHHHCCCCEEEee----ccccccCCChHHHHHHHHHHHHHHhccCCCcEEEEeccCCCchhhHHHHhcCCCcc
Q 003819 192 VAELKAAGATWIQFD----EPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVT 262 (793)
Q Consensus 192 l~~L~~aG~~~VQiD----EP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~lp~Vd 262 (793)
..++.++|+.+|=|= .|-...-..+++++.+..+.+.+.... +..+.+-||.- ++++..++.. ++
T Consensus 30 a~~~~~~GAdiIDIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~~~-~~plSIDT~~~----~v~e~al~~G-~~ 98 (257)
T cd00739 30 AEKMIAEGADIIDIGGESTRPGADPVSVEEELERVIPVLEALRGEL-DVLISVDTFRA----EVARAALEAG-AD 98 (257)
T ss_pred HHHHHHCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcC-CCcEEEeCCCH----HHHHHHHHhC-CC
Confidence 445568999999886 233221122457778887888886543 24577777743 3455444444 55
No 219
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=26.92 E-value=8.5e+02 Score=26.49 Aligned_cols=80 Identities=16% Similarity=0.111 Sum_probs=48.4
Q ss_pred HHHHHHHHHHcCCc-EEEEcCcccccCCCCCcccHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCchhHHHHHHcCCC
Q 003819 615 IKDEVEDLEKAGIT-VIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDA 693 (793)
Q Consensus 615 l~~ev~~L~~aGv~-~IQIDEPal~~~l~l~~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~C~g~~~~i~~~l~~l~~ 693 (793)
++.-+++.++.+.. +||+.+-.+... + .. +......+.+.+..+. +.|.+|.|-|..-+.+....+.++
T Consensus 29 ~~avi~aAe~~~~PvIl~~~~~~~~~~-~----~~----~~~~~~~~~~a~~~~~-vpv~lhlDH~~~~e~i~~ai~~Gf 98 (282)
T TIGR01859 29 TQAILEAAEEENSPVIIQVSEGAIKYM-G----GY----KMAVAMVKTLIERMSI-VPVALHLDHGSSYESCIKAIKAGF 98 (282)
T ss_pred HHHHHHHHHHhCCCEEEEcCcchhhcc-C----cH----HHHHHHHHHHHHHCCC-CeEEEECCCCCCHHHHHHHHHcCC
Confidence 34445555666666 588877654321 1 01 1233344444444321 469999998865556667778899
Q ss_pred cEEEEecCCCC
Q 003819 694 DVITIENSRSD 704 (793)
Q Consensus 694 D~isiE~~r~~ 704 (793)
+.+.+|.+..+
T Consensus 99 ~sVmid~s~l~ 109 (282)
T TIGR01859 99 SSVMIDGSHLP 109 (282)
T ss_pred CEEEECCCCCC
Confidence 99999977654
No 220
>TIGR00695 uxuA mannonate dehydratase. This Fe2+-requiring enzyme plays a role in D-glucuronate catabolism in Escherichia coli. Mannonate dehydratase converts D-mannonate to 2-dehydro-3-deoxy-D-gluconate. An apparent equivalog is found in a glucuronate utilization operon in Bacillus stearothermophilus T-6.
Probab=26.83 E-value=6.2e+02 Score=29.09 Aligned_cols=67 Identities=19% Similarity=0.441 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHcCCcEEEEcCcccccCCCCCcccHHHHHHHHHHHHHHH-hcCCCCCCeEEEEeCCCCchhHHHHH
Q 003819 614 AIKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRIT-NCGVQDTTQVHTHMCYSNFNDIIHSI 688 (793)
Q Consensus 614 al~~ev~~L~~aGv~~IQIDEPal~~~l~l~~~~~~~~l~~av~a~~~~-~~~v~~~~~I~lH~C~g~~~~i~~~l 688 (793)
.+.+.-+.++++|..+=-|.---..+.+.+...+.+.+++.....++.+ -.|++ -+|| ||-.+++..
T Consensus 44 ~i~~~k~~ie~~GL~~~vvEs~pv~e~Ik~g~~~rd~~Ienyk~~irNla~~GI~-------vicY-NFMPv~dW~ 111 (394)
T TIGR00695 44 EIRKRKEYIESAGLHWSVVESVPVHEAIKTGTGNYGRWIENYKQTLRNLAQCGIK-------TVCY-NFMPVLDWT 111 (394)
T ss_pred HHHHHHHHHHHcCCeEEEEeCCCccHHHHcCCCcHHHHHHHHHHHHHHHHHcCCC-------EEEE-Eeccccccc
Confidence 3444445566789986444321122333334456788888877777654 33454 2688 776666653
No 221
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=26.63 E-value=2.3e+02 Score=31.43 Aligned_cols=72 Identities=14% Similarity=0.149 Sum_probs=44.9
Q ss_pred HHHHHHH------CCCCEEEeeccccccCCChHHHHHHHHHHHHHHhccCCCcEEEEeccCCCchhhHHHHhcCCCccEE
Q 003819 191 VVAELKA------AGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGF 264 (793)
Q Consensus 191 ~l~~L~~------aG~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~lp~Vd~l 264 (793)
++.+..+ +|++.||+|-=.+..+......+.++++...+.+ ...+-.+ |++..+++..+..+. ||.|
T Consensus 215 ea~ea~~~~~~~~agaDiImLDnm~~~~~~~~~~~e~l~~av~~~~~---~~~lEaS---GGIt~~ni~~yA~tG-VD~I 287 (308)
T PLN02716 215 EVKEVLEYLSDTKTSLTRVMLDNMVVPLENGDVDVSMLKEAVELING---RFETEAS---GNVTLDTVHKIGQTG-VTYI 287 (308)
T ss_pred HHHHHHHhcccccCCCCEEEeCCCcccccccCCCHHHHHHHHHhhCC---CceEEEE---CCCCHHHHHHHHHcC-CCEE
Confidence 4455567 9999999996433322222246667777765532 2222222 666457788888888 9988
Q ss_pred EEEec
Q 003819 265 GFDLI 269 (793)
Q Consensus 265 ~lD~~ 269 (793)
..=..
T Consensus 288 s~Gal 292 (308)
T PLN02716 288 SSGAL 292 (308)
T ss_pred EeCcc
Confidence 77554
No 222
>PRK11449 putative deoxyribonuclease YjjV; Provisional
Probab=26.56 E-value=7.7e+02 Score=26.25 Aligned_cols=108 Identities=12% Similarity=0.129 Sum_probs=55.7
Q ss_pred CcEEEEeccCCCchhhHHHHhcCCCc--cEEEEEeccCCCChhhHhhhCCCCCEEEEEEeeCCCCCCCCHHHHHHHHHHH
Q 003819 236 LNVLIETYFADVPAETYKILTSLKGV--TGFGFDLIRGTKTLDLIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQDL 313 (793)
Q Consensus 236 ~~i~l~tyfg~~~~~~~~~l~~lp~V--d~l~lD~~~~~~~l~~l~~~~p~~k~l~lGvVdgrn~w~ed~~~i~~~i~~~ 313 (793)
..+.+|+- +.. ++.++.|.+.. + .++.-=|. ++.+...+.+..+-.+|+|- ...+. + .+.++++
T Consensus 128 ~Pv~iH~r-~a~-~~~~~il~~~~-~~~~~i~H~fs---G~~~~a~~~l~~G~~iS~~g---~it~~-~----~~~~~~~ 193 (258)
T PRK11449 128 LPVILHSR-RTH-DKLAMHLKRHD-LPRTGVVHGFS---GSLQQAERFVQLGYKIGVGG---TITYP-R----ASKTRDV 193 (258)
T ss_pred CCEEEEec-Ccc-HHHHHHHHhcC-CCCCeEEEcCC---CCHHHHHHHHHCCCEEEeCc---ccccc-C----cHHHHHH
Confidence 46777764 445 66777777643 2 23322233 33444333222233455432 11111 1 1345677
Q ss_pred hhhcCCCcEEEeCCCCCcccccccccccCCcHHHHhHHHHHHHHHHHHH
Q 003819 314 AGTVGKDKVVVSTSCSLLHTAVDLENETKLDQEIKSWLAFAAQKVVEVN 362 (793)
Q Consensus 314 ~~~v~~e~l~vspsCgL~hvP~~~~~E~~l~~~~~~~lafA~qKl~El~ 362 (793)
++.+|.++|.+-|||+++ .|......++-|.. +....++++++.
T Consensus 194 ~~~ipldriL~ETD~P~l-~p~~~~~~~n~p~~----~~~~~~~ia~l~ 237 (258)
T PRK11449 194 IAKLPLASLLLETDAPDM-PLNGFQGQPNRPEQ----AARVFDVLCELR 237 (258)
T ss_pred HHhCChhhEEEecCCCCC-CCCCCCCCCCCChH----HHHHHHHHHHHH
Confidence 778899999999999987 34322323333333 333445555553
No 223
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=26.47 E-value=1.8e+02 Score=33.29 Aligned_cols=74 Identities=19% Similarity=0.167 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHcCCcEEEEcCcccccCCCCCcccHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCchhH-HHHHHcCC
Q 003819 614 AIKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDI-IHSIMDMD 692 (793)
Q Consensus 614 al~~ev~~L~~aGv~~IQIDEPal~~~l~l~~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~C~g~~~~i-~~~l~~l~ 692 (793)
.|-+..++|.+.||+.|+|-+.+-- + . |.. .-..|.+++..+. ++ ..+|+|.. +.+..+ +=...+.+
T Consensus 157 ~yv~~akel~~~g~DSIciKDmaGl--l--t---P~~-ayelVk~iK~~~~-~p--v~lHtH~T-sG~a~m~ylkAvEAG 224 (472)
T COG5016 157 YYVELAKELLEMGVDSICIKDMAGL--L--T---PYE-AYELVKAIKKELP-VP--VELHTHAT-SGMAEMTYLKAVEAG 224 (472)
T ss_pred HHHHHHHHHHHcCCCEEEeeccccc--C--C---hHH-HHHHHHHHHHhcC-Ce--eEEecccc-cchHHHHHHHHHHhC
Confidence 4555667888999999999986632 1 1 211 1123445554433 32 55666644 333322 22234677
Q ss_pred CcEEEEe
Q 003819 693 ADVITIE 699 (793)
Q Consensus 693 ~D~isiE 699 (793)
+|.|.--
T Consensus 225 vD~iDTA 231 (472)
T COG5016 225 VDGIDTA 231 (472)
T ss_pred cchhhhh
Confidence 7776544
No 224
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=26.39 E-value=8.9e+02 Score=26.59 Aligned_cols=141 Identities=17% Similarity=0.154 Sum_probs=0.0
Q ss_pred HHHHHHcCCcEEEEcCcccccCCCCCcccHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCC---chhHHHHHHcCCCcE
Q 003819 619 VEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSN---FNDIIHSIMDMDADV 695 (793)
Q Consensus 619 v~~L~~aGv~~IQIDEPal~~~l~l~~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~C~g~---~~~i~~~l~~l~~D~ 695 (793)
.+-++++|.+.|-+---.++..+.+....... ++.++.-.+++++.+.=++-+=+-+.||+ ....+..+.+.++.+
T Consensus 31 A~la~~aGF~al~~sg~~vA~slG~pD~~~~t-~~e~~~~vrrI~~a~~lPv~vD~dtGfG~~~nvartV~~~~~aG~ag 109 (289)
T COG2513 31 ALLAERAGFKALYLSGAGVAASLGLPDLGITT-LDEVLADARRITDAVDLPVLVDIDTGFGEALNVARTVRELEQAGAAG 109 (289)
T ss_pred HHHHHHcCCeEEEeccHHHHHhcCCCcccccc-HHHHHHHHHHHHhhcCCceEEeccCCCCcHHHHHHHHHHHHHcCcce
Q ss_pred EEEecCCCChhhHHHhhhcccCCCeEeeeeecCC--CCCCCCHHHHHHHHHHHHhhcCCCcEEEc--CCCCCCCCChhHH
Q 003819 696 ITIENSRSDEKLLSVFREGVKYRAGIGPGVYDIH--SPRIPSTEEIADRINKMLAVLESNILWVN--PDCGLKTRKYSEV 771 (793)
Q Consensus 696 isiE~~r~~~~~L~~~~~~~~~~~~i~~GVvD~~--s~~ves~eev~~~i~~al~~i~~~~l~vs--PdCGL~t~~~~~~ 771 (793)
++||....+-. .+| +..+-++++++++|+.+.+.-+...+.|+ +|--+... -+++
T Consensus 110 i~iEDq~~pk~--------------------cgh~~gk~l~~~~e~v~rIkAa~~a~~~~~fvi~ARTda~~~~~-ld~A 168 (289)
T COG2513 110 IHIEDQVGPKR--------------------CGHLPGKELVSIDEMVDRIKAAVEARRDPDFVIIARTDALLVEG-LDDA 168 (289)
T ss_pred eeeeecccchh--------------------cCCCCCCCcCCHHHHHHHHHHHHHhccCCCeEEEeehHHHHhcc-HHHH
Q ss_pred HHHHHHHHHH
Q 003819 772 KPALSNMVAA 781 (793)
Q Consensus 772 ~~kL~~mv~a 781 (793)
.+-.++.++|
T Consensus 169 I~Ra~AY~eA 178 (289)
T COG2513 169 IERAQAYVEA 178 (289)
T ss_pred HHHHHHHHHc
No 225
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=26.27 E-value=8.8e+02 Score=26.49 Aligned_cols=147 Identities=14% Similarity=0.192 Sum_probs=76.9
Q ss_pred HHHHHHHHHcCCcEEEEcCcccc---cCCCCCc-ccHHHHHHHHHHHHHHHhcCCC-CCCeEEEEeC-C--CCchhHHHH
Q 003819 616 KDEVEDLEKAGITVIQIDEAALR---EGLPLRK-SEQDFYLKWAVHSFRITNCGVQ-DTTQVHTHMC-Y--SNFNDIIHS 687 (793)
Q Consensus 616 ~~ev~~L~~aGv~~IQIDEPal~---~~l~l~~-~~~~~~l~~av~a~~~~~~~v~-~~~~I~lH~C-~--g~~~~i~~~ 687 (793)
..-++.++++|+.-|+|.+-... ..++... .+.+++ +.-++.+.+... ++.-|.--+. + ..+++.++.
T Consensus 91 ~~tv~~~~~aG~agi~IEDq~~pK~cgh~~g~~lv~~ee~----~~kI~Aa~~a~~~~d~~IiARTDa~~~~g~deAI~R 166 (285)
T TIGR02317 91 ARTVREMEDAGAAAVHIEDQVLPKRCGHLPGKELVSREEM----VDKIAAAVDAKRDEDFVIIARTDARAVEGLDAAIER 166 (285)
T ss_pred HHHHHHHHHcCCeEEEEecCCCccccCCCCCccccCHHHH----HHHHHHHHHhccCCCEEEEEEcCcccccCHHHHHHH
Confidence 34578899999999999885532 1111110 122222 222333322222 1222222211 1 135555554
Q ss_pred ---HHcCCCcEEEEecCCCChhhHHHhhhcccCCCeEeeeeecC-CCCCCCCHHHHHHHHHHHHhhcCCCcEEEcCCCCC
Q 003819 688 ---IMDMDADVITIENSRSDEKLLSVFREGVKYRAGIGPGVYDI-HSPRIPSTEEIADRINKMLAVLESNILWVNPDCGL 763 (793)
Q Consensus 688 ---l~~l~~D~isiE~~r~~~~~L~~~~~~~~~~~~i~~GVvD~-~s~~ves~eev~~~i~~al~~i~~~~l~vsPdCGL 763 (793)
..+.++|++.+|...+ .+.++.|.+.. +..+.+-++.. .+|. .+.+++ ..+|..++...+
T Consensus 167 a~ay~~AGAD~vfi~g~~~-~e~i~~~~~~i--~~Pl~~n~~~~~~~p~-~s~~eL--------~~lGv~~v~~~~---- 230 (285)
T TIGR02317 167 AKAYVEAGADMIFPEALTS-LEEFRQFAKAV--KVPLLANMTEFGKTPL-FTADEL--------REAGYKMVIYPV---- 230 (285)
T ss_pred HHHHHHcCCCEEEeCCCCC-HHHHHHHHHhc--CCCEEEEeccCCCCCC-CCHHHH--------HHcCCcEEEEch----
Confidence 3579999999997664 44566665522 23343333322 2232 355554 456777776643
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHH
Q 003819 764 KTRKYSEVKPALSNMVAAAKLLRT 787 (793)
Q Consensus 764 ~t~~~~~~~~kL~~mv~aa~~~r~ 787 (793)
.-....++.|.+++..+++
T Consensus 231 -----~~~~aa~~a~~~~~~~l~~ 249 (285)
T TIGR02317 231 -----TAFRAMNKAAEAVYNEIKE 249 (285)
T ss_pred -----HHHHHHHHHHHHHHHHHHH
Confidence 2335778888888887764
No 226
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=26.22 E-value=2.4e+02 Score=30.43 Aligned_cols=62 Identities=16% Similarity=0.148 Sum_probs=39.0
Q ss_pred HHHHHHHHCCCCEEEeeccccccCCChHHHHHHHHHHHHHHhccCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEE
Q 003819 190 EVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFD 267 (793)
Q Consensus 190 ~~l~~L~~aG~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~lp~Vd~l~lD 267 (793)
+++.+..++|++|||+|-... +.++++.+.+.+ .+.+... |++..++++.+.+.. ||++.+=
T Consensus 189 eea~~A~~~gaDyI~ld~~~~---------e~lk~~v~~~~~---~ipi~As---GGI~~~ni~~~a~~G-vd~Isvg 250 (265)
T TIGR00078 189 EEAEEAAEAGADIIMLDNMKP---------EEIKEAVQLLKG---RVLLEAS---GGITLDNLEEYAETG-VDVISSG 250 (265)
T ss_pred HHHHHHHHcCCCEEEECCCCH---------HHHHHHHHHhcC---CCcEEEE---CCCCHHHHHHHHHcC-CCEEEeC
Confidence 344455689999999985322 334444443322 2334333 666567888999999 9999883
No 227
>PRK07534 methionine synthase I; Validated
Probab=26.10 E-value=8.1e+02 Score=27.35 Aligned_cols=136 Identities=17% Similarity=0.190 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHHHHHCCCCEEEeeccccccCCChHHHHHHHHHHHHHHhccCCCcEEEEeccC---------CCchhhH
Q 003819 182 DKIIPVYKEVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFA---------DVPAETY 252 (793)
Q Consensus 182 ~~L~~~Y~~~l~~L~~aG~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg---------~~~~~~~ 252 (793)
+++...|.+.++.|.+.||+.|=+.- -.+-.+..++.++.+.. +..++++.-+. ++ .+++
T Consensus 127 ~e~~~~~~~qi~~l~~~gvD~l~~ET-----~p~l~E~~a~~~~~~~~-----~~Pv~vSft~~~~g~l~~G~~~-~~~~ 195 (336)
T PRK07534 127 ALAVEAFHEQAEGLKAGGADVLWVET-----ISAPEEIRAAAEAAKLA-----GMPWCGTMSFDTAGRTMMGLTP-ADLA 195 (336)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEec-----cCCHHHHHHHHHHHHHc-----CCeEEEEEEECCCCeeCCCCcH-HHHH
Confidence 56788999999999999999876652 12223444444444432 24555553332 12 4566
Q ss_pred HHHhcCC-CccEEEEEeccCCCCh-hhHhhhCCC--CCEEE----EEE---eeCCCCCCCCHHHHHHHHHHHhhhcCCCc
Q 003819 253 KILTSLK-GVTGFGFDLIRGTKTL-DLIKTEFPL--GKYLF----AGV---VDGRNIWANDLASSLTTLQDLAGTVGKDK 321 (793)
Q Consensus 253 ~~l~~lp-~Vd~l~lD~~~~~~~l-~~l~~~~p~--~k~l~----lGv---Vdgrn~w~ed~~~i~~~i~~~~~~v~~e~ 321 (793)
..+.+++ .++++++....++..+ ..+...... ++-|+ .|. .|++..|..+++...+.+++..+ .| =
T Consensus 196 ~~~~~~~~~~~avGvNC~~gp~~~~~~l~~~~~~~~~~pl~vyPNaG~p~~~~~~~~~~~~p~~~~~~~~~~~~-~G--a 272 (336)
T PRK07534 196 DLVEKLGEPPLAFGANCGVGASDLLRTVLGFTAQGPERPIIAKGNAGIPKYVDGHIHYDGTPELMAEYAVLARD-AG--A 272 (336)
T ss_pred HHHHhcCCCceEEEecCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCCCcccCCCccccCCCHHHHHHHHHHHHH-cC--C
Confidence 6666553 1599999998765443 444331111 12222 122 36666777888877777766643 23 3
Q ss_pred EEEeCCCCCc
Q 003819 322 VVVSTSCSLL 331 (793)
Q Consensus 322 l~vspsCgL~ 331 (793)
-+|.==||--
T Consensus 273 ~iIGGCCGTt 282 (336)
T PRK07534 273 RIIGGCCGTM 282 (336)
T ss_pred cEEeeecCCC
Confidence 4567778763
No 228
>PRK08005 epimerase; Validated
Probab=25.50 E-value=7.8e+02 Score=25.62 Aligned_cols=141 Identities=12% Similarity=0.086 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHCCCCEEEeec--cccccCC--ChHHHHHHHHHHHHHHhccCCCcEEEEeccCCCchhhHHHHhcCCCcc
Q 003819 187 VYKEVVAELKAAGATWIQFDE--PTLVLDL--DSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVT 262 (793)
Q Consensus 187 ~Y~~~l~~L~~aG~~~VQiDE--P~L~~d~--~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~lp~Vd 262 (793)
-+.+++++|.++|++||.+|= -.++-++ ....++.+++. . ...+-+|-...+. ...++.+.+.. +|
T Consensus 14 ~l~~el~~l~~~g~d~lHiDvMDG~FVPN~tfG~~~i~~l~~~----t----~~~~DvHLMv~~P-~~~i~~~~~~g-ad 83 (210)
T PRK08005 14 RYAEALTALHDAPLGSLHLDIEDTSFINNITFGMKTIQAVAQQ----T----RHPLSFHLMVSSP-QRWLPWLAAIR-PG 83 (210)
T ss_pred HHHHHHHHHHHCCCCEEEEeccCCCcCCccccCHHHHHHHHhc----C----CCCeEEEeccCCH-HHHHHHHHHhC-CC
Confidence 467889999999999999992 1111111 12233443332 1 1122223222333 55678888877 77
Q ss_pred EEEEEeccCC---CChhhHhhhCCCCCEEEEEEeeCCCCCCCCHHHHHHHHHHHhhhcCCCc-EEEeCCCCCcccccccc
Q 003819 263 GFGFDLIRGT---KTLDLIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDK-VVVSTSCSLLHTAVDLE 338 (793)
Q Consensus 263 ~l~lD~~~~~---~~l~~l~~~~p~~k~l~lGvVdgrn~w~ed~~~i~~~i~~~~~~v~~e~-l~vspsCgL~hvP~~~~ 338 (793)
.+.+-+-... ..+..+++ .+...++-+ |+- ++++.+...|. .+ |. +..+-.=|+.-=+
T Consensus 84 ~It~H~Ea~~~~~~~l~~Ik~---~G~k~GlAl----nP~-Tp~~~i~~~l~----~v--D~VlvMsV~PGf~GQ~---- 145 (210)
T PRK08005 84 WIFIHAESVQNPSEILADIRA---IGAKAGLAL----NPA-TPLLPYRYLAL----QL--DALMIMTSEPDGRGQQ---- 145 (210)
T ss_pred EEEEcccCccCHHHHHHHHHH---cCCcEEEEE----CCC-CCHHHHHHHHH----hc--CEEEEEEecCCCccce----
Confidence 6666554321 22333333 244444444 332 45555443333 33 34 3333333433111
Q ss_pred cccCCcHHHHhHHHHHHHHHHHHHHHHH
Q 003819 339 NETKLDQEIKSWLAFAAQKVVEVNALAK 366 (793)
Q Consensus 339 ~E~~l~~~~~~~lafA~qKl~El~~l~~ 366 (793)
+...+.+|+++++.+..
T Consensus 146 -----------f~~~~~~KI~~l~~~~~ 162 (210)
T PRK08005 146 -----------FIAAMCEKVSQSREHFP 162 (210)
T ss_pred -----------ecHHHHHHHHHHHHhcc
Confidence 22358889998887643
No 229
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=25.47 E-value=5.3e+02 Score=28.56 Aligned_cols=96 Identities=15% Similarity=0.235 Sum_probs=52.3
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHcCCcEEEEcCcc---cccCCC----CC----cccHHHHHHHHHHHHHHHhcCCCCCC
Q 003819 602 QPRFETCYQIALAIKDEVEDLEKAGITVIQIDEAA---LREGLP----LR----KSEQDFYLKWAVHSFRITNCGVQDTT 670 (793)
Q Consensus 602 ~~~~e~~~~lA~al~~ev~~L~~aGv~~IQIDEPa---l~~~l~----l~----~~~~~~~l~~av~a~~~~~~~v~~~~ 670 (793)
.+.+|+ .++...+.+-.+.+.++|++.|+|.--- +...|. .+ ......-.++..+.++.+-+.++++.
T Consensus 144 mt~~eI-~~ii~~~~~aA~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~vG~d~ 222 (336)
T cd02932 144 LTREEI-AEVVDAFVAAARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVWPEDK 222 (336)
T ss_pred CCHHHH-HHHHHHHHHHHHHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHHcCCCc
Confidence 444443 5677777777888889999999998411 111111 01 11222333444444444444554444
Q ss_pred eEEEEeCC------C-Cc---hhHHHHHHcCCCcEEEE
Q 003819 671 QVHTHMCY------S-NF---NDIIHSIMDMDADVITI 698 (793)
Q Consensus 671 ~I~lH~C~------g-~~---~~i~~~l~~l~~D~isi 698 (793)
.|.+-+.. | +. -.+++.+.+.++|.|++
T Consensus 223 ~v~vri~~~~~~~~g~~~~e~~~ia~~Le~~gvd~iev 260 (336)
T cd02932 223 PLFVRISATDWVEGGWDLEDSVELAKALKELGVDLIDV 260 (336)
T ss_pred eEEEEEcccccCCCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 55555441 1 12 24556677788888875
No 230
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=25.47 E-value=8.2e+02 Score=25.85 Aligned_cols=144 Identities=15% Similarity=0.131 Sum_probs=0.0
Q ss_pred HHHHHHcCCcEEEEcCcccccCCCCCcccHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCchhH---HHHHHcCCCcE
Q 003819 619 VEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDI---IHSIMDMDADV 695 (793)
Q Consensus 619 v~~L~~aGv~~IQIDEPal~~~l~l~~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~C~g~~~~i---~~~l~~l~~D~ 695 (793)
.+-++++|++.|.+-.-+....+ ..+..-.--++..+...+.+...+.-..-.-.-+.||+...+ +..+.+.++++
T Consensus 22 A~~~e~~G~~ai~~s~~~~~~s~-G~pD~~~~~~~e~~~~~~~I~~~~~~Pv~~D~~~G~g~~~~~~~~v~~~~~~G~~g 100 (243)
T cd00377 22 ARLAERAGFKAIYTSGAGVAASL-GLPDGGLLTLDEVLAAVRRIARAVDLPVIADADTGYGNALNVARTVRELEEAGAAG 100 (243)
T ss_pred HHHHHHcCCCEEEeccHHHHHhc-CCCCCCcCCHHHHHHHHHHHHhhccCCEEEEcCCCCCCHHHHHHHHHHHHHcCCEE
Q ss_pred EEEecCCCChhhHHHhhhcccCCCeEeeeeecCCCCCCCCHHHHHHHHHHHHhhcCC--CcEEEcCCCCCCC--CChhHH
Q 003819 696 ITIENSRSDEKLLSVFREGVKYRAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLES--NILWVNPDCGLKT--RKYSEV 771 (793)
Q Consensus 696 isiE~~r~~~~~L~~~~~~~~~~~~i~~GVvD~~s~~ves~eev~~~i~~al~~i~~--~~l~vsPdCGL~t--~~~~~~ 771 (793)
+.+|.... ++.-|-- ....+-+.||..++|+.+.+.... +-+++.--..+.. ...+++
T Consensus 101 v~iED~~~--------------~k~~g~~----~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiARTDa~~~~~~~~~ea 162 (243)
T cd00377 101 IHIEDQVG--------------PKKCGHH----GGKVLVPIEEFVAKIKAARDARDDLPDFVIIARTDALLAGEEGLDEA 162 (243)
T ss_pred EEEecCCC--------------CccccCC----CCCeecCHHHHHHHHHHHHHHHhccCCeEEEEEcCchhccCCCHHHH
Q ss_pred HHHHHHHHHH
Q 003819 772 KPALSNMVAA 781 (793)
Q Consensus 772 ~~kL~~mv~a 781 (793)
.+-.+...+|
T Consensus 163 i~Ra~ay~~A 172 (243)
T cd00377 163 IERAKAYAEA 172 (243)
T ss_pred HHHHHHHHHc
No 231
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=25.35 E-value=7.9e+02 Score=25.62 Aligned_cols=149 Identities=11% Similarity=0.102 Sum_probs=85.5
Q ss_pred HHHHHHHHCCCCEEEeeccccccC--CChHHHHHHHHHHHHHHhccCCCcE-EEEeccCCCchhhHHHHhcCCCccEEEE
Q 003819 190 EVVAELKAAGATWIQFDEPTLVLD--LDSHKLQAFSDAYSELQSSLSGLNV-LIETYFADVPAETYKILTSLKGVTGFGF 266 (793)
Q Consensus 190 ~~l~~L~~aG~~~VQiDEP~L~~d--~~~~~~~~~~~~y~~l~~~~~~~~i-~l~tyfg~~~~~~~~~l~~lp~Vd~l~l 266 (793)
++++.|.++|+++|.+==|.-.-- .-.+..+. .+.+.+..++.++ .+.+. . ...+..+.+.+ ++.+++
T Consensus 23 ~i~~~L~~~GV~~IEvg~~~~~~~~p~~~~~~~~----i~~l~~~~~~~~~~~l~~~---~-~~~i~~a~~~g-~~~i~i 93 (265)
T cd03174 23 EIAEALDEAGVDSIEVGSGASPKAVPQMEDDWEV----LRAIRKLVPNVKLQALVRN---R-EKGIERALEAG-VDEVRI 93 (265)
T ss_pred HHHHHHHHcCCCEEEeccCcCccccccCCCHHHH----HHHHHhccCCcEEEEEccC---c-hhhHHHHHhCC-cCEEEE
Confidence 456778889999999876553200 00112222 2333332212334 22222 1 33467777887 888887
Q ss_pred EeccC---------C---CChhhHhhh----CCCCCEEEEEEeeCCCCCCCCHHHHHHHHHHHhhhcCCCcEEEeCCCCC
Q 003819 267 DLIRG---------T---KTLDLIKTE----FPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVSTSCSL 330 (793)
Q Consensus 267 D~~~~---------~---~~l~~l~~~----~p~~k~l~lGvVdgrn~w~ed~~~i~~~i~~~~~~v~~e~l~vspsCgL 330 (793)
=+... . +.++.+... -..+..+.+.+.+.-.. ..+++.+.+.++.+.+ .|.+.+.+..+-|.
T Consensus 94 ~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~-~~~~~~l~~~~~~~~~-~g~~~i~l~Dt~G~ 171 (265)
T cd03174 94 FDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGC-KTDPEYVLEVAKALEE-AGADEISLKDTVGL 171 (265)
T ss_pred EEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCC-CCCHHHHHHHHHHHHH-cCCCEEEechhcCC
Confidence 76532 0 123332221 12456788888654332 5899999999999876 57889999888665
Q ss_pred cccccccccccCCcHHHHhHHHHHHHHHHH
Q 003819 331 LHTAVDLENETKLDQEIKSWLAFAAQKVVE 360 (793)
Q Consensus 331 ~hvP~~~~~E~~l~~~~~~~lafA~qKl~E 360 (793)
. . |.++.+.++..++.+..
T Consensus 172 ~-~----------P~~v~~li~~l~~~~~~ 190 (265)
T cd03174 172 A-T----------PEEVAELVKALREALPD 190 (265)
T ss_pred c-C----------HHHHHHHHHHHHHhCCC
Confidence 3 2 45566666665555543
No 232
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=25.27 E-value=2.4e+02 Score=31.11 Aligned_cols=63 Identities=21% Similarity=0.252 Sum_probs=39.6
Q ss_pred HHHHHHHCCCCEEEeeccccccCCChHHHHHHHHHHHHHHhccCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEEec
Q 003819 191 VVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLI 269 (793)
Q Consensus 191 ~l~~L~~aG~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~lp~Vd~l~lD~~ 269 (793)
++.+..++|++.||+|-.. .++ ++++...+.. ++.+-.- |++..+++..+..+. ||.|..=..
T Consensus 220 ea~ea~~~gaDiI~LDn~s------~e~---~~~av~~~~~-----~~~ieaS-GGI~~~ni~~yA~tG-VD~Is~gal 282 (296)
T PRK09016 220 ELDQALKAGADIIMLDNFT------TEQ---MREAVKRTNG-----RALLEVS-GNVTLETLREFAETG-VDFISVGAL 282 (296)
T ss_pred HHHHHHHcCCCEEEeCCCC------hHH---HHHHHHhhcC-----CeEEEEE-CCCCHHHHHHHHhcC-CCEEEeCcc
Confidence 4556678999999999533 233 3333333321 3333322 767457888889998 999887654
No 233
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=24.99 E-value=2.3e+02 Score=30.92 Aligned_cols=63 Identities=16% Similarity=0.206 Sum_probs=38.9
Q ss_pred HHHHHHHCCCCEEEeeccccccCCChHHHHHHHHHHHHHHhccCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEEec
Q 003819 191 VVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLI 269 (793)
Q Consensus 191 ~l~~L~~aG~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~lp~Vd~l~lD~~ 269 (793)
++.+..++|+++||+|- .+.+ .++++.+.+.. ++.+... |++..++++.+.+.. ||+|..=..
T Consensus 201 ea~eA~~~gaD~I~LD~------~~~e---~l~~~v~~~~~---~i~leAs---GGIt~~ni~~~a~tG-vD~Isvg~l 263 (277)
T PRK05742 201 ELRQALAAGADIVMLDE------LSLD---DMREAVRLTAG---RAKLEAS---GGINESTLRVIAETG-VDYISIGAM 263 (277)
T ss_pred HHHHHHHcCCCEEEECC------CCHH---HHHHHHHHhCC---CCcEEEE---CCCCHHHHHHHHHcC-CCEEEEChh
Confidence 34555688999999982 2222 33333333321 3344443 666457888999998 999887654
No 234
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=24.85 E-value=57 Score=22.78 Aligned_cols=25 Identities=32% Similarity=0.429 Sum_probs=20.8
Q ss_pred HHHHHHHHhhC---CCCCHHHHHHHHHH
Q 003819 16 ELKFALESFWD---GKSSADELQNVAAD 40 (793)
Q Consensus 16 eLK~A~e~yw~---g~is~~eL~~~~~~ 40 (793)
|++++...|-+ |.||.+||.+..+.
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 67888888875 88999999988764
No 235
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=24.76 E-value=9.3e+02 Score=26.26 Aligned_cols=116 Identities=16% Similarity=0.189 Sum_probs=63.4
Q ss_pred HHHHHHHHcCCc-EEEE-----cCcccccCCCCCcccHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCC-------Cchh
Q 003819 617 DEVEDLEKAGIT-VIQI-----DEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYS-------NFND 683 (793)
Q Consensus 617 ~ev~~L~~aGv~-~IQI-----DEPal~~~l~l~~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~C~g-------~~~~ 683 (793)
+++++|.++|++ .|.+ |+-.|... -+..+.+ ...++++.+-+. ...+.+|+-+| ++.+
T Consensus 127 ~~L~~l~~~G~~~~i~lGlQS~~d~~L~~i--~Rg~t~~----~~~~ai~~l~~~---gi~v~~~lI~GlPget~e~~~~ 197 (302)
T TIGR01212 127 DLLAEYVERGYEVWVELGLQTAHDKTLKKI--NRGHDFA----CYVDAVKRARKR---GIKVCSHVILGLPGEDREEMME 197 (302)
T ss_pred HHHHHhhhCCceEEEEEccCcCCHHHHHHH--cCcChHH----HHHHHHHHHHHc---CCEEEEeEEECCCCCCHHHHHH
Confidence 445566678884 4655 33333211 1112222 234444444322 24577787766 2445
Q ss_pred HHHHHHcCCCcEEEEecC-CCChhhHHHhhhcccCCCeEeeeeecCCCCCCCCHHHHHHHHHHHHhhcCCCcE
Q 003819 684 IIHSIMDMDADVITIENS-RSDEKLLSVFREGVKYRAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLESNIL 755 (793)
Q Consensus 684 i~~~l~~l~~D~isiE~~-r~~~~~L~~~~~~~~~~~~i~~GVvD~~s~~ves~eev~~~i~~al~~i~~~~l 755 (793)
.+..+.++++|.+++=.- .-....|..... + | .-...+.++..+.+..+++.++++.+
T Consensus 198 t~~~l~~l~~d~i~i~~l~~~pgT~L~~~~~-----~----g-----~~~~~~~~e~~~~~~~~l~~l~~~~~ 256 (302)
T TIGR01212 198 TAKIVSLLDVDGIKIHPLHVVKGTKMAKMYE-----K----G-----ELKTLSLEEYISLACDFLEHLPPEVV 256 (302)
T ss_pred HHHHHHhcCCCEEEEEEEEecCCCHHHHHHH-----c----C-----CCCCCCHHHHHHHHHHHHHhCCcCeE
Confidence 667778899998887521 111122322211 1 1 11246788999999999999988754
No 236
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=24.76 E-value=2.7e+02 Score=28.02 Aligned_cols=20 Identities=40% Similarity=0.704 Sum_probs=17.2
Q ss_pred HHHHHHHHHHCCCCEEEeec
Q 003819 188 YKEVVAELKAAGATWIQFDE 207 (793)
Q Consensus 188 Y~~~l~~L~~aG~~~VQiDE 207 (793)
|.+.++.+.++|+++||+|.
T Consensus 14 ~~~~~~~~~~~G~~~i~l~~ 33 (211)
T cd00429 14 LGEELKRLEEAGADWIHIDV 33 (211)
T ss_pred HHHHHHHHHHcCCCEEEEec
Confidence 56678889999999999985
No 237
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=24.62 E-value=9.2e+02 Score=28.65 Aligned_cols=141 Identities=10% Similarity=0.081 Sum_probs=74.4
Q ss_pred HHHHHHHcCCcEEEEcCcccccCCCCCcccHHHHHHHHHHHHHHHhcCCCC--------CCeEEEEeCCC---CchhHHH
Q 003819 618 EVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQD--------TTQVHTHMCYS---NFNDIIH 686 (793)
Q Consensus 618 ev~~L~~aGv~~IQIDEPal~~~l~l~~~~~~~~l~~av~a~~~~~~~v~~--------~~~I~lH~C~g---~~~~i~~ 686 (793)
.++.|.++|+++|.+=-|+... +++ ++++.+.+..+. ...|..| |.. +.+..++
T Consensus 111 Ia~~L~~~GVd~IEvG~Pa~s~---------~e~-----e~i~~i~~~~~~~~~~~~~l~~~i~a~-~R~~~~dId~a~~ 175 (503)
T PLN03228 111 IARQLAKLRVDIMEVGFPGSSE---------EEF-----EAVKTIAKTVGNEVDEETGYVPVICGI-ARCKKRDIEAAWE 175 (503)
T ss_pred HHHHHHHcCCCEEEEeCCCCCH---------HHH-----HHHHHHHHhcccccccccccceEEeee-cccCHhhHHHHHH
Confidence 3566888999999996665432 111 122222221110 0122222 222 3344444
Q ss_pred HHHcCCCcEEEEecCCCChh-----------hHHHhhhc----ccCCC-eEeeeeecCCCCCCCCHHHHHHHHHHHHhhc
Q 003819 687 SIMDMDADVITIENSRSDEK-----------LLSVFREG----VKYRA-GIGPGVYDIHSPRIPSTEEIADRINKMLAVL 750 (793)
Q Consensus 687 ~l~~l~~D~isiE~~r~~~~-----------~L~~~~~~----~~~~~-~i~~GVvD~~s~~ves~eev~~~i~~al~~i 750 (793)
.+...+++.+++-.+.|+.+ .++.+.+. ...+. .+.+|.-|.. .-+++-+.+.++++.+ .
T Consensus 176 a~~~a~~~~V~i~i~~Sd~h~~~kl~~s~ee~l~~~~~~V~~Ak~~G~~~v~f~~EDa~---Rtd~efl~~~~~~a~~-~ 251 (503)
T PLN03228 176 ALKYAKRPRILAFTSTSDIHMKYKLKKTKEEVIEMAVSSIRYAKSLGFHDIQFGCEDGG---RSDKEFLCKILGEAIK-A 251 (503)
T ss_pred hhcccCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEecccccc---ccCHHHHHHHHHHHHh-c
Confidence 44445778888875554322 12211110 01122 3566665543 2357888888888876 5
Q ss_pred CCCcEEEcCCCCCCCCChhHHHHHHHHHH
Q 003819 751 ESNILWVNPDCGLKTRKYSEVKPALSNMV 779 (793)
Q Consensus 751 ~~~~l~vsPdCGL~t~~~~~~~~kL~~mv 779 (793)
|++++.+.-.-|.. +|.++..-++.+.
T Consensus 252 Gad~I~l~DTvG~~--tP~~v~~lV~~l~ 278 (503)
T PLN03228 252 GATSVGIADTVGIN--MPHEFGELVTYVK 278 (503)
T ss_pred CCCEEEEecCCCCC--CHHHHHHHHHHHH
Confidence 88999888777775 5655544444443
No 238
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=24.62 E-value=2.8e+02 Score=30.45 Aligned_cols=64 Identities=19% Similarity=0.232 Sum_probs=39.9
Q ss_pred HHHHHHHHCCCCEEEeeccccccCCChHHHHHHHHHHHHHHhccCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEEec
Q 003819 190 EVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLI 269 (793)
Q Consensus 190 ~~l~~L~~aG~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~lp~Vd~l~lD~~ 269 (793)
+++.+..++|++.||+| ..+.++ ++++...+.+ ++.+--- |++..++++....+. ||.|..=..
T Consensus 208 eea~~a~~agaDiImLD------nmspe~---l~~av~~~~~-----~~~leaS-GGI~~~ni~~yA~tG-VD~Is~gal 271 (290)
T PRK06559 208 AAAEEAAAAGADIIMLD------NMSLEQ---IEQAITLIAG-----RSRIECS-GNIDMTTISRFRGLA-IDYVSSGSL 271 (290)
T ss_pred HHHHHHHHcCCCEEEEC------CCCHHH---HHHHHHHhcC-----ceEEEEE-CCCCHHHHHHHHhcC-CCEEEeCcc
Confidence 34556668999999999 344333 4444443322 2333222 666557788888888 998887654
No 239
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=24.48 E-value=9.7e+02 Score=26.34 Aligned_cols=148 Identities=14% Similarity=0.121 Sum_probs=77.6
Q ss_pred HHHHHHHHHcCCcEEEEcCcccc---cCCCCCc-ccHHHHHHHHHHHHHHHhcCCC-CCCeEEEEeC-C--CCchhHHHH
Q 003819 616 KDEVEDLEKAGITVIQIDEAALR---EGLPLRK-SEQDFYLKWAVHSFRITNCGVQ-DTTQVHTHMC-Y--SNFNDIIHS 687 (793)
Q Consensus 616 ~~ev~~L~~aGv~~IQIDEPal~---~~l~l~~-~~~~~~l~~av~a~~~~~~~v~-~~~~I~lH~C-~--g~~~~i~~~ 687 (793)
..-|+.++++|+.-|+|.+-... ..++.+. .+.++ .+.-++.+.+... ++.-|.--+. + ..+++.++.
T Consensus 95 ~r~V~~~~~aGaagi~IEDq~~pK~cg~~~~k~lv~~ee----~~~kI~Aa~~A~~~~d~~I~ARTDa~~~~g~deaI~R 170 (294)
T TIGR02319 95 WRATREFERVGIVGYHLEDQVNPKRCGHLEGKRLISTEE----MTGKIEAAVEAREDEDFTIIARTDARESFGLDEAIRR 170 (294)
T ss_pred HHHHHHHHHcCCeEEEEECCCCccccCCCCCccccCHHH----HHHHHHHHHHhccCCCeEEEEEecccccCCHHHHHHH
Confidence 44578899999999999885432 1111110 11222 2223333322221 1222211111 1 235555554
Q ss_pred H---HcCCCcEEEEecCCCChhhHHHhhhcccCCCeEeeeeecC-CCCCCCCHHHHHHHHHHHHhhcCCCcEEEcCCCCC
Q 003819 688 I---MDMDADVITIENSRSDEKLLSVFREGVKYRAGIGPGVYDI-HSPRIPSTEEIADRINKMLAVLESNILWVNPDCGL 763 (793)
Q Consensus 688 l---~~l~~D~isiE~~r~~~~~L~~~~~~~~~~~~i~~GVvD~-~s~~ves~eev~~~i~~al~~i~~~~l~vsPdCGL 763 (793)
. .+.++|++.++...+ .+.++.|.+..+ ..+.+-++.+ .+| ..+.+++ ..+|..++...+
T Consensus 171 a~aY~eAGAD~ifi~~~~~-~~ei~~~~~~~~--~P~~~nv~~~~~~p-~~s~~eL--------~~lG~~~v~~~~---- 234 (294)
T TIGR02319 171 SREYVAAGADCIFLEAMLD-VEEMKRVRDEID--APLLANMVEGGKTP-WLTTKEL--------ESIGYNLAIYPL---- 234 (294)
T ss_pred HHHHHHhCCCEEEecCCCC-HHHHHHHHHhcC--CCeeEEEEecCCCC-CCCHHHH--------HHcCCcEEEEcH----
Confidence 3 579999999997554 445666654222 2333333332 233 2366664 446777776633
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHH
Q 003819 764 KTRKYSEVKPALSNMVAAAKLLRTQ 788 (793)
Q Consensus 764 ~t~~~~~~~~kL~~mv~aa~~~r~~ 788 (793)
.-.+..+++|.++++.+++.
T Consensus 235 -----~~~~aa~~a~~~~~~~l~~~ 254 (294)
T TIGR02319 235 -----SGWMAAASVLRKLFTELREA 254 (294)
T ss_pred -----HHHHHHHHHHHHHHHHHHHc
Confidence 33467888888888888753
No 240
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=24.44 E-value=1.3e+03 Score=27.91 Aligned_cols=135 Identities=12% Similarity=0.206 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHHHHHcCCcEEEEcC-cccccCCCCCcccHHHHHHHHHHHHHHHhcCCCCCCeEEEE--------eCCC
Q 003819 609 YQIALAIKDEVEDLEKAGITVIQIDE-AALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTH--------MCYS 679 (793)
Q Consensus 609 ~~lA~al~~ev~~L~~aGv~~IQIDE-Pal~~~l~l~~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH--------~C~g 679 (793)
+++...+++.++.|.++|+++|-+.- |.+. ....++.+.+... .++ +++- ++-|
T Consensus 121 ~~~~~~~~~~~~~l~~~gvD~l~~ET~~~~~------------Ea~a~~~a~~~~~-~~p----~~~Sf~~~~~g~l~~G 183 (612)
T PRK08645 121 EEIRREFREQIDALLEEGVDGLLLETFYDLE------------ELLLALEAAREKT-DLP----IIAQVAFHEDGVTQNG 183 (612)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEEccCCHH------------HHHHHHHHHHHhC-CCc----EEEEEEECCCCeeCCC
Confidence 66778888999999999999876652 2221 2334555555432 122 2222 2222
Q ss_pred -CchhHHHHHHcCCCcEEEEecCCCChhhHHHhhhcccCCCeEeeeeecC---------CCCCCCCHHHHHHHHHHHHhh
Q 003819 680 -NFNDIIHSIMDMDADVITIENSRSDEKLLSVFREGVKYRAGIGPGVYDI---------HSPRIPSTEEIADRINKMLAV 749 (793)
Q Consensus 680 -~~~~i~~~l~~l~~D~isiE~~r~~~~~L~~~~~~~~~~~~i~~GVvD~---------~s~~ves~eev~~~i~~al~~ 749 (793)
++.+++..+.+++++++++-.+.+.......++. ......+-+||+.- +..+-.++++..+.+.+..+.
T Consensus 184 ~~~~~~~~~~~~~~~~avGiNC~~~p~~~~~~l~~-l~~~~~~pl~vypNaG~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 262 (612)
T PRK08645 184 TSLEEALKELVAAGADVVGLNCGLGPYHMLEALER-IPIPENAPLSAYPNAGLPEYVDGRYVYSANPEYFAEYALEFVEQ 262 (612)
T ss_pred CCHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHH-HHhccCceEEEEECCCCCCCCCCccccCCCHHHHHHHHHHHHHh
Confidence 3678888888899999999876533223333322 11111233443322 223445888888888887764
Q ss_pred cCCCcEEEcCCCCCC
Q 003819 750 LESNILWVNPDCGLK 764 (793)
Q Consensus 750 i~~~~l~vsPdCGL~ 764 (793)
|.. +|.=-||-.
T Consensus 263 -Ga~--iiGGCCgt~ 274 (612)
T PRK08645 263 -GVR--LIGGCCGTT 274 (612)
T ss_pred -CCC--EEeEecCCC
Confidence 443 788889974
No 241
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=24.39 E-value=1.9e+02 Score=31.98 Aligned_cols=71 Identities=18% Similarity=0.195 Sum_probs=39.9
Q ss_pred HHHHHHHH------cCCcEEEEcCcccccCCCCCcccHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCchhHHHHHHc
Q 003819 617 DEVEDLEK------AGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMD 690 (793)
Q Consensus 617 ~ev~~L~~------aGv~~IQIDEPal~~~l~l~~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~C~g~~~~i~~~l~~ 690 (793)
+|+.+..+ +|+++||+|..-+... -.+.++++ +..+++.. +.. +.+-...|=-.+.+..++.
T Consensus 214 eea~ea~~~~~~~~agaDiImLDnm~~~~~--~~~~~~e~-l~~av~~~-------~~~--~~lEaSGGIt~~ni~~yA~ 281 (308)
T PLN02716 214 EEVKEVLEYLSDTKTSLTRVMLDNMVVPLE--NGDVDVSM-LKEAVELI-------NGR--FETEASGNVTLDTVHKIGQ 281 (308)
T ss_pred HHHHHHHHhcccccCCCCEEEeCCCccccc--ccCCCHHH-HHHHHHhh-------CCC--ceEEEECCCCHHHHHHHHH
Confidence 35555567 9999999998633211 00112322 33333322 211 2244443333467888899
Q ss_pred CCCcEEEEe
Q 003819 691 MDADVITIE 699 (793)
Q Consensus 691 l~~D~isiE 699 (793)
+++|+||+=
T Consensus 282 tGVD~Is~G 290 (308)
T PLN02716 282 TGVTYISSG 290 (308)
T ss_pred cCCCEEEeC
Confidence 999999986
No 242
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=24.36 E-value=5e+02 Score=27.44 Aligned_cols=138 Identities=10% Similarity=0.127 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHCCCCEEEeec--cccccCC--ChHHHHHHHHHHHHHHhccC-CCcEEEEeccCCCchhhHHHHhcCCCc
Q 003819 187 VYKEVVAELKAAGATWIQFDE--PTLVLDL--DSHKLQAFSDAYSELQSSLS-GLNVLIETYFADVPAETYKILTSLKGV 261 (793)
Q Consensus 187 ~Y~~~l~~L~~aG~~~VQiDE--P~L~~d~--~~~~~~~~~~~y~~l~~~~~-~~~i~l~tyfg~~~~~~~~~l~~lp~V 261 (793)
-+.+++++|.++|++|+.+|= -.++-+. ....++.++ +..+ ++++++. +. ...++.+.+.. +
T Consensus 26 ~l~~el~~l~~~g~d~lHiDVMDG~FVPNitfGp~~i~~i~-------~~~~~DvHLMv~----~P-~~~i~~~~~aG-a 92 (228)
T PRK08091 26 KFNETLTTLSENQLRLLHFDIADGQFSPFFTVGAIAIKQFP-------THCFKDVHLMVR----DQ-FEVAKACVAAG-A 92 (228)
T ss_pred HHHHHHHHHHHCCCCEEEEeccCCCcCCccccCHHHHHHhC-------CCCCEEEEeccC----CH-HHHHHHHHHhC-C
Confidence 366889999999999999992 1111111 122333332 1111 2333333 33 55678888776 7
Q ss_pred cEEEEEeccCC---CChhhHhhhCCCCCEEEEEEeeCCCCCCCCHHHHHHHHHHHhhhcCCCc---EEEeCCCCCccccc
Q 003819 262 TGFGFDLIRGT---KTLDLIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDK---VVVSTSCSLLHTAV 335 (793)
Q Consensus 262 d~l~lD~~~~~---~~l~~l~~~~p~~k~l~lGvVdgrn~w~ed~~~i~~~i~~~~~~v~~e~---l~vspsCgL~hvP~ 335 (793)
|.+.+=+-... ..+..+++ .++.+-+||+=.=. ++++.+...| ..+ |. +.|.| ||.-=
T Consensus 93 d~It~H~Ea~~~~~~~l~~Ik~---~g~~~kaGlalnP~---Tp~~~i~~~l----~~v--D~VLiMtV~P--GfgGQ-- 156 (228)
T PRK08091 93 DIVTLQVEQTHDLALTIEWLAK---QKTTVLIGLCLCPE---TPISLLEPYL----DQI--DLIQILTLDP--RTGTK-- 156 (228)
T ss_pred CEEEEcccCcccHHHHHHHHHH---CCCCceEEEEECCC---CCHHHHHHHH----hhc--CEEEEEEECC--CCCCc--
Confidence 76655443221 22333333 24434566642222 3444443333 333 34 33344 43321
Q ss_pred ccccccCCcHHHHhHHHHHHHHHHHHHHHHH
Q 003819 336 DLENETKLDQEIKSWLAFAAQKVVEVNALAK 366 (793)
Q Consensus 336 ~~~~E~~l~~~~~~~lafA~qKl~El~~l~~ 366 (793)
++...+.+|+++++.+-.
T Consensus 157 -------------~f~~~~l~KI~~lr~~~~ 174 (228)
T PRK08091 157 -------------APSDLILDRVIQVENRLG 174 (228)
T ss_pred -------------cccHHHHHHHHHHHHHHH
Confidence 223368899999988754
No 243
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=24.32 E-value=3.5e+02 Score=31.59 Aligned_cols=74 Identities=18% Similarity=0.129 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHcCCcEEEEcCcccccCCCCCcccHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCchhHHHHHHcCC
Q 003819 613 LAIKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMD 692 (793)
Q Consensus 613 ~al~~ev~~L~~aGv~~IQIDEPal~~~l~l~~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~C~g~~~~i~~~l~~l~ 692 (793)
+.+.+.++.+.++|++.|.|-+.+=... ..-....+.+++..+. ++ ..+|+|--+|---...-.-.+.+
T Consensus 154 ~~~~~~a~~l~~~Gad~I~i~Dt~G~l~--------P~~v~~lv~alk~~~~-~p--i~~H~Hnt~GlA~AN~laAieaG 222 (448)
T PRK12331 154 DYFVKLAKEMQEMGADSICIKDMAGILT--------PYVAYELVKRIKEAVT-VP--LEVHTHATSGIAEMTYLKAIEAG 222 (448)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCCCCC--------HHHHHHHHHHHHHhcC-Ce--EEEEecCCCCcHHHHHHHHHHcC
Q ss_pred CcEEE
Q 003819 693 ADVIT 697 (793)
Q Consensus 693 ~D~is 697 (793)
+|.+.
T Consensus 223 ad~vD 227 (448)
T PRK12331 223 ADIID 227 (448)
T ss_pred CCEEE
No 244
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=24.23 E-value=2.1e+02 Score=33.95 Aligned_cols=217 Identities=18% Similarity=0.213 Sum_probs=100.6
Q ss_pred hhHHHHHhhccCceeeccceeeecCCccccC-cEEEccCCCCCCcchhHHHHHHh--------cCCCCceeeec-hHHHH
Q 003819 523 DMVEYFGEQLSGFAFTVNGWVQSYGSRCVKP-PIIYGDVSRPKAMTVFWSSMAQS--------MTKRPMKGMLT-GPVTI 592 (793)
Q Consensus 523 d~v~~f~e~l~G~~~~~~g~v~~~~~~~~~~-P~i~g~v~~~~~~~~~~~~~aq~--------~t~kpvK~~Lt-GPvTl 592 (793)
||..-..+-|+||.. +|.+.--.| -+++||-+.-+.-.++-+.-|+- .|..|||++|. ||+.+
T Consensus 286 DMYSEVLD~Ls~YD~-------sYnt~DhLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHV 358 (980)
T KOG0447|consen 286 DMYSEVLDVLSDYDA-------SYNTQDHLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHV 358 (980)
T ss_pred HHHHHHHHHHhcccc-------cccccccCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchh
Confidence 777777777888753 354432223 35779887655434444444432 25579999874 99998
Q ss_pred hhcc--cccCCCChHHHHHHHHHHHHHHHHHHHHcCCcE------EEEcCccccc----CCCCCcccHH-HHHHHHHHH-
Q 003819 593 LNWS--FVRNDQPRFETCYQIALAIKDEVEDLEKAGITV------IQIDEAALRE----GLPLRKSEQD-FYLKWAVHS- 658 (793)
Q Consensus 593 l~~s--~~~~~~~~~e~~~~lA~al~~ev~~L~~aGv~~------IQIDEPal~~----~l~l~~~~~~-~~l~~av~a- 658 (793)
+..- --..|..+++-+.+|-.-+.--.+.-.+-|+.+ +-+--|.|.- +||..-+... +......+.
T Consensus 359 AqFrDSsREfDLTKE~DLq~LR~e~E~RMr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I 438 (980)
T KOG0447|consen 359 ALFKDSSREFDLTKEEDLAALRHEIELRMRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETI 438 (980)
T ss_pred hhhccccccccccchhHHHHHHHHHHHHHHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHH
Confidence 8631 112355555544443332222223333345532 2233344321 1221100000 000000111
Q ss_pred HHHHhcCCCCCCeEEEEeCCCCch----hHHHHHHcCCC---cEEEE----ecCCC---ChhhH-HHhhhcccCC-CeEe
Q 003819 659 FRITNCGVQDTTQVHTHMCYSNFN----DIIHSIMDMDA---DVITI----ENSRS---DEKLL-SVFREGVKYR-AGIG 722 (793)
Q Consensus 659 ~~~~~~~v~~~~~I~lH~C~g~~~----~i~~~l~~l~~---D~isi----E~~r~---~~~~L-~~~~~~~~~~-~~i~ 722 (793)
++..-.-...+.-|++.+--|..+ .+-+.+.++|. -.|.+ |.+.. +..-+ +.+.. ..+| +.+|
T Consensus 439 ~~msKayM~NPNAIILCIQDGSVDAERSnVTDLVsq~DP~GrRTIfVLTKVDlAEknlA~PdRI~kIleG-KLFPMKALG 517 (980)
T KOG0447|consen 439 FSISKAYMQNPNAIILCIQDGSVDAERSIVTDLVSQMDPHGRRTIFVLTKVDLAEKNVASPSRIQQIIEG-KLFPMKALG 517 (980)
T ss_pred HHHHHHHhcCCCeEEEEeccCCcchhhhhHHHHHHhcCCCCCeeEEEEeecchhhhccCCHHHHHHHHhc-Cccchhhcc
Confidence 111111222234567666555432 23344445543 23332 21111 11112 22222 2233 2343
Q ss_pred -eeeecCCCCCCCCHHHHHHHHHHHH
Q 003819 723 -PGVYDIHSPRIPSTEEIADRINKML 747 (793)
Q Consensus 723 -~GVvD~~s~~ves~eev~~~i~~al 747 (793)
.|||.++-..-+|.++|..-=+.+.
T Consensus 518 YfaVVTGrGnssdSIdaIR~YEE~FF 543 (980)
T KOG0447|consen 518 YFAVVTGKGNSSESIEAIREYEEEFF 543 (980)
T ss_pred eeEEEecCCCcchhHHHHHHHHHHHh
Confidence 6899999888889998876655553
No 245
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=24.14 E-value=1.2e+03 Score=27.12 Aligned_cols=147 Identities=9% Similarity=0.085 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCcEEEEcCcccccCCCCCcccHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCC-chhH
Q 003819 606 ETCYQIALAIKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSN-FNDI 684 (793)
Q Consensus 606 e~~~~lA~al~~ev~~L~~aGv~~IQIDEPal~~~l~l~~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~C~g~-~~~i 684 (793)
+.......++.+|++...+....-..+..-.+..+.|..- ....+....+.++... .+...+.+.+-+=... -.+.
T Consensus 78 ~~~~~y~~~L~~Ei~~~~~~~~~~~~v~~i~fgGGTPs~l--~~~~l~~ll~~i~~~~-~~~~~~e~tie~~p~~lt~e~ 154 (453)
T PRK13347 78 APVEAYVAALIREIRLVAASLPQRRRVSQLHWGGGTPTIL--NPDQFERLMAALRDAF-DFAPEAEIAVEIDPRTVTAEM 154 (453)
T ss_pred chHHHHHHHHHHHHHHHHHhcCCCCeEEEEEEcCcccccC--CHHHHHHHHHHHHHhC-CCCCCceEEEEeccccCCHHH
Confidence 4455677888888876655421112334444555544210 1223333344443322 2222234443322122 2578
Q ss_pred HHHHHcCCCcEEEEecCCCChh-------------hHH---HhhhcccCCCeEeeeeecCCCCCCCCHHHHHHHHHHHHh
Q 003819 685 IHSIMDMDADVITIENSRSDEK-------------LLS---VFREGVKYRAGIGPGVYDIHSPRIPSTEEIADRINKMLA 748 (793)
Q Consensus 685 ~~~l~~l~~D~isiE~~r~~~~-------------~L~---~~~~~~~~~~~i~~GVvD~~s~~ves~eev~~~i~~al~ 748 (793)
+..+.+++++.++|=.-..+.+ .++ .+++ .++. .|.+.++=+- --.|++++.+.++.+.+
T Consensus 155 l~~L~~~G~~rvsiGvQS~~~~vl~~l~R~~~~~~~~~ai~~lr~-~G~~-~v~~dli~Gl--Pgqt~e~~~~tl~~~~~ 230 (453)
T PRK13347 155 LQALAALGFNRASFGVQDFDPQVQKAINRIQPEEMVARAVELLRA-AGFE-SINFDLIYGL--PHQTVESFRETLDKVIA 230 (453)
T ss_pred HHHHHHcCCCEEEECCCCCCHHHHHHhCCCCCHHHHHHHHHHHHh-cCCC-cEEEeEEEeC--CCCCHHHHHHHHHHHHh
Confidence 8999999999988762111111 122 2222 2222 1222222111 12699999999999876
Q ss_pred hcCCCcEEEcCC
Q 003819 749 VLESNILWVNPD 760 (793)
Q Consensus 749 ~i~~~~l~vsPd 760 (793)
++++++.+-+=
T Consensus 231 -l~p~~i~~y~l 241 (453)
T PRK13347 231 -LSPDRIAVFGY 241 (453)
T ss_pred -cCCCEEEEecc
Confidence 67888877543
No 246
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=23.51 E-value=3.5e+02 Score=32.00 Aligned_cols=74 Identities=14% Similarity=0.169 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHcCCcEEEEcCcccccCCCCCcccHHHHHHHHHHHHHHHhc-CCCCCCeEEEEeCCCCchhHHHHH--Hc
Q 003819 614 AIKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNC-GVQDTTQVHTHMCYSNFNDIIHSI--MD 690 (793)
Q Consensus 614 al~~ev~~L~~aGv~~IQIDEPal~~~l~l~~~~~~~~l~~av~a~~~~~~-~v~~~~~I~lH~C~g~~~~i~~~l--~~ 690 (793)
.+.+.++.+.++|++.|.|-+.+=.. .|.. ....+.+++..+. +++ ..+|+|--+|- .+...+ .+
T Consensus 156 ~~~~~a~~l~~~Gad~I~IkDtaGll-------~P~~-~~~LV~~Lk~~~~~~ip--I~~H~Hnt~Gl--A~An~laAie 223 (499)
T PRK12330 156 GFVEQAKRLLDMGADSICIKDMAALL-------KPQP-AYDIVKGIKEACGEDTR--INLHCHSTTGV--TLVSLMKAIE 223 (499)
T ss_pred HHHHHHHHHHHcCCCEEEeCCCccCC-------CHHH-HHHHHHHHHHhCCCCCe--EEEEeCCCCCc--HHHHHHHHHH
Confidence 34455666788999999998876331 1222 2233444444332 222 45666656664 233344 45
Q ss_pred CCCcEEEEe
Q 003819 691 MDADVITIE 699 (793)
Q Consensus 691 l~~D~isiE 699 (793)
.++|.|..=
T Consensus 224 AGad~vDta 232 (499)
T PRK12330 224 AGVDVVDTA 232 (499)
T ss_pred cCCCEEEee
Confidence 667765443
No 247
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=23.50 E-value=3.1e+02 Score=29.93 Aligned_cols=65 Identities=9% Similarity=0.077 Sum_probs=40.2
Q ss_pred HHHHHHHHcCCcEEEEcCcccccCCCCCcccHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCchhHHHHHHcCCCcEE
Q 003819 617 DEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDADVI 696 (793)
Q Consensus 617 ~ev~~L~~aGv~~IQIDEPal~~~l~l~~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~C~g~~~~i~~~l~~l~~D~i 696 (793)
+++++..++|+++||+|.-. ++ -+..+++.++ ... .++.+-...|=-.+.+..+.++++|+|
T Consensus 199 eea~ea~~~GaDiI~lDn~~-----------~e-~l~~~v~~l~----~~~--~~~~leasGGI~~~ni~~ya~~GvD~i 260 (277)
T TIGR01334 199 EQALTVLQASPDILQLDKFT-----------PQ-QLHHLHERLK----FFD--HIPTLAAAGGINPENIADYIEAGIDLF 260 (277)
T ss_pred HHHHHHHHcCcCEEEECCCC-----------HH-HHHHHHHHHh----ccC--CCEEEEEECCCCHHHHHHHHhcCCCEE
Confidence 45666778999999999421 12 2333344332 222 234555564433467888999999999
Q ss_pred EEe
Q 003819 697 TIE 699 (793)
Q Consensus 697 siE 699 (793)
+.=
T Consensus 261 s~g 263 (277)
T TIGR01334 261 ITS 263 (277)
T ss_pred EeC
Confidence 875
No 248
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=23.39 E-value=8.1e+02 Score=25.76 Aligned_cols=93 Identities=16% Similarity=0.217 Sum_probs=52.1
Q ss_pred HHHHHHHH-HcCCCCceEeehHHHHhhhccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEeeccccccCCCh
Q 003819 138 VQEYKEAK-ALGMETVPVLVGPVSYLLLSKPAKGVEKSFSLLSLIDKIIPVYKEVVAELKAAGATWIQFDEPTLVLDLDS 216 (793)
Q Consensus 138 ~~e~~~a~-~~g~~~K~vl~GP~T~l~ls~~~~~~~~~~~~~~ll~~L~~~Y~~~l~~L~~aG~~~VQiDEP~L~~d~~~ 216 (793)
+++++... +.|+ +.++-||+.+ .++. .++ +..++-+..+.+.++...+.||..|.+.-........+
T Consensus 47 ~~~l~~~~~~~gl--~ls~h~p~~~-nl~s--------~d~-~~r~~~~~~l~~~i~~A~~lGa~~vv~h~g~~~~~~~e 114 (273)
T smart00518 47 AEKFKEALKENNI--DVSVHAPYLI-NLAS--------PDK-EKVEKSIERLIDEIKRCEELGIKALVFHPGSYLKQSKE 114 (273)
T ss_pred HHHHHHHHHHcCC--CEEEECCcee-cCCC--------CCH-HHHHHHHHHHHHHHHHHHHcCCCEEEEccccccCCCHH
Confidence 44444443 3354 5777888653 1221 122 33445556677788888899999999864432111123
Q ss_pred HHHHHHHHHHHHHHhccCCCcEEEEe
Q 003819 217 HKLQAFSDAYSELQSSLSGLNVLIET 242 (793)
Q Consensus 217 ~~~~~~~~~y~~l~~~~~~~~i~l~t 242 (793)
+..+.+.+.++.+.+...++.+.+-+
T Consensus 115 ~~~~~~~~~l~~l~~~~~gv~l~lEn 140 (273)
T smart00518 115 EALNRIIESLNEVIDETKGVVILLET 140 (273)
T ss_pred HHHHHHHHHHHHHHhccCCcEEEEec
Confidence 34566666666666532245676654
No 249
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=23.29 E-value=1e+03 Score=26.17 Aligned_cols=76 Identities=12% Similarity=0.125 Sum_probs=41.5
Q ss_pred HHHcCCcEEEEcCccc---ccCCCC-CcccHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCchhH---HHHHHcCCCc
Q 003819 622 LEKAGITVIQIDEAAL---REGLPL-RKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDI---IHSIMDMDAD 694 (793)
Q Consensus 622 L~~aGv~~IQIDEPal---~~~l~l-~~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~C~g~~~~i---~~~l~~l~~D 694 (793)
++++|.+.|.+---+. ..++|= ..-+++++ ....+.++..++-++-+=.-..||+...+ +..+.+.++.
T Consensus 32 ~e~aGf~ai~~sg~~~~as~lG~pD~g~l~~~e~----~~~~~~I~~~~~lPv~aD~dtGyG~~~~v~r~V~~~~~aGaa 107 (294)
T TIGR02319 32 IQQAGFPAVHMTGSGTSASMLGLPDLGFTSVSEQ----AINAKNIVLAVDVPVIMDADAGYGNAMSVWRATREFERVGIV 107 (294)
T ss_pred HHHcCCCEEEecHHHHHHHHcCCCCcCCCCHHHH----HHHHHHHHhccCCCEEEECCCCCCCcHHHHHHHHHHHHcCCe
Confidence 4556888777643221 123321 11223333 33444444444322333444678876555 5677899999
Q ss_pred EEEEecC
Q 003819 695 VITIENS 701 (793)
Q Consensus 695 ~isiE~~ 701 (793)
+|+||..
T Consensus 108 gi~IEDq 114 (294)
T TIGR02319 108 GYHLEDQ 114 (294)
T ss_pred EEEEECC
Confidence 9999964
No 250
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=23.09 E-value=9.8e+02 Score=26.73 Aligned_cols=31 Identities=16% Similarity=0.252 Sum_probs=24.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHcCCCcc-cCC
Q 003819 486 ISEDDYVKTIKEEINNVVKLQEELDIDVL-VHG 517 (793)
Q Consensus 486 i~~~~~~~~~~~~i~~~i~~Q~~~Gldvi-~~G 517 (793)
+|.++.++++++-...+.+. +++|.|.| .|+
T Consensus 134 mt~~eI~~ii~~f~~aA~~a-~~aGfDgVeih~ 165 (353)
T cd04735 134 LTHEEIEDIIDAFGEATRRA-IEAGFDGVEIHG 165 (353)
T ss_pred CCHHHHHHHHHHHHHHHHHH-HHcCCCEEEEcc
Confidence 89999999999988766655 46899987 343
No 251
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=23.09 E-value=4.6e+02 Score=26.60 Aligned_cols=101 Identities=13% Similarity=0.106 Sum_probs=53.0
Q ss_pred HHHHHHHcCCcEEEEcCcccccCCCCCcccHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCchhHHHHHHcCCCcEEE
Q 003819 618 EVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDADVIT 697 (793)
Q Consensus 618 ev~~L~~aGv~~IQIDEPal~~~l~l~~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~C~g~~~~i~~~l~~l~~D~is 697 (793)
.++.+.+.|+++||+-+-.. ++.+.++.+...+ +.+.++-.+..-+ +-++...++++|.++
T Consensus 29 ~~~~~~~~Gv~~vqlr~k~~---------~~~e~~~~~~~~~--------~~~~~g~gtvl~~--d~~~~A~~~gAdgv~ 89 (187)
T PRK07455 29 MAEAVAAGGMRLIEITWNSD---------QPAELISQLREKL--------PECIIGTGTILTL--EDLEEAIAAGAQFCF 89 (187)
T ss_pred HHHHHHHCCCCEEEEeCCCC---------CHHHHHHHHHHhC--------CCcEEeEEEEEcH--HHHHHHHHcCCCEEE
Confidence 45567789999999975332 2223333222211 1233333333322 667778899999996
Q ss_pred EecCCCChhhHHHhhhcccCCCeEeeeeecCCCCCCCCHHHHHHHHHHHHhhc
Q 003819 698 IENSRSDEKLLSVFREGVKYRAGIGPGVYDIHSPRIPSTEEIADRINKMLAVL 750 (793)
Q Consensus 698 iE~~r~~~~~L~~~~~~~~~~~~i~~GVvD~~s~~ves~eev~~~i~~al~~i 750 (793)
.-.. +.+.++.-+. .+....+| +.|++|+....+.-.+++
T Consensus 90 ~p~~--~~~~~~~~~~---~~~~~i~G--------~~t~~e~~~A~~~Gadyv 129 (187)
T PRK07455 90 TPHV--DPELIEAAVA---QDIPIIPG--------ALTPTEIVTAWQAGASCV 129 (187)
T ss_pred CCCC--CHHHHHHHHH---cCCCEEcC--------cCCHHHHHHHHHCCCCEE
Confidence 6532 2233332222 12335566 356777766555444443
No 252
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=23.06 E-value=8.1e+02 Score=26.01 Aligned_cols=134 Identities=12% Similarity=0.152 Sum_probs=70.0
Q ss_pred HHHHHHHHCCCCEEEeeccccccCC----ChHHHHHHHHHHHHHHhccCCCcEEEEeccCCCchhhHHHHhcCCCccEEE
Q 003819 190 EVVAELKAAGATWIQFDEPTLVLDL----DSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFG 265 (793)
Q Consensus 190 ~~l~~L~~aG~~~VQiDEP~L~~d~----~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~lp~Vd~l~ 265 (793)
+..+++.++|+++|=|-=-.-..+. ..++.+.+..+.+.+.+.. +..+.+-||. .++++.-++.. ++ +-
T Consensus 28 ~~a~~~~~~GAdiIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~-~~piSIDT~~----~~v~~aaL~~g-~~-iI 100 (258)
T cd00423 28 EHARRMVEEGADIIDIGGESTRPGAEPVSVEEELERVIPVLRALAGEP-DVPISVDTFN----AEVAEAALKAG-AD-II 100 (258)
T ss_pred HHHHHHHHCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhcC-CCeEEEeCCc----HHHHHHHHHhC-CC-EE
Confidence 3455677899999988732211111 2456788888888886533 3456666663 23444444433 33 33
Q ss_pred EEeccCC--CChhhHhhhCCCCCEEEEEEeeCCCC-------CCCC----HHHHHHHHHHHhhh-cCCCcEEEeCCCCCc
Q 003819 266 FDLIRGT--KTLDLIKTEFPLGKYLFAGVVDGRNI-------WAND----LASSLTTLQDLAGT-VGKDKVVVSTSCSLL 331 (793)
Q Consensus 266 lD~~~~~--~~l~~l~~~~p~~k~l~lGvVdgrn~-------w~ed----~~~i~~~i~~~~~~-v~~e~l~vspsCgL~ 331 (793)
-|..... ..+-.+.+.. +..+++--.++... +-.. .+...++++.+.+. ++.+++++.|--|+.
T Consensus 101 Ndis~~~~~~~~~~l~~~~--~~~vV~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Gi~~~~IilDPg~g~~ 178 (258)
T cd00423 101 NDVSGGRGDPEMAPLAAEY--GAPVVLMHMDGTPQTMQNNPYYADVVDEVVEFLEERVEAATEAGIPPEDIILDPGIGFG 178 (258)
T ss_pred EeCCCCCCChHHHHHHHHc--CCCEEEECcCCCCcccccCCCcchHHHHHHHHHHHHHHHHHHcCCCHHHEEEeCCCCcc
Confidence 3322211 1222222222 33455444555433 1233 34444555555542 336899999988775
Q ss_pred c
Q 003819 332 H 332 (793)
Q Consensus 332 h 332 (793)
.
T Consensus 179 k 179 (258)
T cd00423 179 K 179 (258)
T ss_pred C
Confidence 4
No 253
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=22.74 E-value=7.9e+02 Score=24.69 Aligned_cols=107 Identities=18% Similarity=0.227 Sum_probs=57.1
Q ss_pred HHHHHHHHHcCCcEEEEcCcccccCCCCCcccHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCchhHHHHHHcCCCcE
Q 003819 616 KDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDADV 695 (793)
Q Consensus 616 ~~ev~~L~~aGv~~IQIDEPal~~~l~l~~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~C~g~~~~i~~~l~~l~~D~ 695 (793)
.+.++.+.++|+++||++.- ... ..+.++.+.+..+ +..|+-.+... .+-++....+++|.
T Consensus 19 ~~~~~~l~~~G~~~vev~~~---------~~~-------~~~~i~~l~~~~~-~~~iGag~v~~--~~~~~~a~~~Ga~~ 79 (190)
T cd00452 19 LALAEALIEGGIRAIEITLR---------TPG-------ALEAIRALRKEFP-EALIGAGTVLT--PEQADAAIAAGAQF 79 (190)
T ss_pred HHHHHHHHHCCCCEEEEeCC---------Chh-------HHHHHHHHHHHCC-CCEEEEEeCCC--HHHHHHHHHcCCCE
Confidence 34456788899999999841 111 2224444444443 23344333321 35677888899999
Q ss_pred EEEecCCCChhhHHHhhhcccCCCeEeeeeecCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEcC
Q 003819 696 ITIENSRSDEKLLSVFREGVKYRAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLESNILWVNP 759 (793)
Q Consensus 696 isiE~~r~~~~~L~~~~~~~~~~~~i~~GVvD~~s~~ves~eev~~~i~~al~~i~~~~l~vsP 759 (793)
+..-. .+.+..+.-+. ++..+.+|+- |++|+...++ .|.+-+-+-|
T Consensus 80 i~~p~--~~~~~~~~~~~---~~~~~i~gv~--------t~~e~~~A~~-----~Gad~i~~~p 125 (190)
T cd00452 80 IVSPG--LDPEVVKAANR---AGIPLLPGVA--------TPTEIMQALE-----LGADIVKLFP 125 (190)
T ss_pred EEcCC--CCHHHHHHHHH---cCCcEECCcC--------CHHHHHHHHH-----CCCCEEEEcC
Confidence 97542 23343443333 2334555553 6677654443 3444444444
No 254
>PRK03906 mannonate dehydratase; Provisional
Probab=22.44 E-value=8.2e+02 Score=27.98 Aligned_cols=104 Identities=20% Similarity=0.254 Sum_probs=63.3
Q ss_pred CCceeeech---HHHHhhc---ccccCCCChHHHHHHHHHHHHHHHHHHHHcCCcE-EEEcCcccc-cCCCCCcccHHHH
Q 003819 580 RPMKGMLTG---PVTILNW---SFVRNDQPRFETCYQIALAIKDEVEDLEKAGITV-IQIDEAALR-EGLPLRKSEQDFY 651 (793)
Q Consensus 580 kpvK~~LtG---PvTll~~---s~~~~~~~~~e~~~~lA~al~~ev~~L~~aGv~~-IQIDEPal~-~~l~l~~~~~~~~ 651 (793)
..+-..+|| |+|+... .....+.+.+++-+.++..+++.+.-.++.|+++ |--|+|-+. .+++-.-.+.
T Consensus 175 ~~~i~~lpG~~~~~~~~~~~~~~~~y~~i~~e~lw~~l~~fL~~v~p~Aee~GV~LaihPdDPp~~~~Gl~riv~t~--- 251 (385)
T PRK03906 175 RNIIAGLPGWEEPYTLEQFRALLELYKDIDEEKLRENLAYFLKAIIPVAEEVGVKMAIHPDDPPRPIFGLPRIVSTE--- 251 (385)
T ss_pred ccEEEeCCCCCccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEeeCCccccccccCceeCCH---
Confidence 466677888 5555432 1112356888888999999999999999999984 777777532 1222110112
Q ss_pred HHHHHHHHHHHhcCCCCCCeEEEEeCCCCc-----hhHHHHHHcCC
Q 003819 652 LKWAVHSFRITNCGVQDTTQVHTHMCYSNF-----NDIIHSIMDMD 692 (793)
Q Consensus 652 l~~av~a~~~~~~~v~~~~~I~lH~C~g~~-----~~i~~~l~~l~ 692 (793)
+.+.++++.++ ...+.++.|-|++ +++.+.|....
T Consensus 252 -----~d~~rll~~v~-Sp~~gl~lDtG~l~~~~e~D~~~~I~~~g 291 (385)
T PRK03906 252 -----EDLQRLLDAVD-SPANGLTLCTGSLGARPDNDLPAMIREFG 291 (385)
T ss_pred -----HHHHHHHHhcC-CCceeEEEchhhhhhcCCCCHHHHHHHhh
Confidence 22334445554 2357889998875 24555555443
No 255
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=22.28 E-value=4.1e+02 Score=31.20 Aligned_cols=73 Identities=16% Similarity=0.135 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHcCCcEEEEcCcccccCCCCCcccHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCchhHHHHH--HcC
Q 003819 614 AIKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSI--MDM 691 (793)
Q Consensus 614 al~~ev~~L~~aGv~~IQIDEPal~~~l~l~~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~C~g~~~~i~~~l--~~l 691 (793)
.+.+.++.+.++|++.|.|=+.+=.. .|.+ ....+.+++..+. ++ ..+|+|--+|- .+...+ .+.
T Consensus 154 ~~~~~a~~l~~~Gad~I~i~Dt~G~l-------~P~~-v~~Lv~~lk~~~~-vp--I~~H~Hnt~Gl--A~AN~laAiea 220 (467)
T PRK14041 154 YYLEFARELVDMGVDSICIKDMAGLL-------TPKR-AYELVKALKKKFG-VP--VEVHSHCTTGL--ASLAYLAAVEA 220 (467)
T ss_pred HHHHHHHHHHHcCCCEEEECCccCCc-------CHHH-HHHHHHHHHHhcC-Cc--eEEEecCCCCc--HHHHHHHHHHh
Confidence 34445566788999999998876331 1222 2334455554432 33 56777766665 233444 356
Q ss_pred CCcEEEEe
Q 003819 692 DADVITIE 699 (793)
Q Consensus 692 ~~D~isiE 699 (793)
++|.+..=
T Consensus 221 Gad~vD~s 228 (467)
T PRK14041 221 GADMFDTA 228 (467)
T ss_pred CCCEEEee
Confidence 67765543
No 256
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=22.15 E-value=6.7e+02 Score=26.68 Aligned_cols=127 Identities=9% Similarity=0.075 Sum_probs=61.1
Q ss_pred HHHHHHHCCCCEEEeeccccccCCChH--HHHHHHHHHHHHHhccCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEEe
Q 003819 191 VVAELKAAGATWIQFDEPTLVLDLDSH--KLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDL 268 (793)
Q Consensus 191 ~l~~L~~aG~~~VQiDEP~L~~d~~~~--~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~lp~Vd~l~lD~ 268 (793)
.++.+.+.|+++|.+=+ ++.. ....-.+.+..+.+.. ..++.+..-..+. ++ +..+.++. ++++-+.-
T Consensus 35 ~a~~~~~~g~~~l~i~D------l~~~~~~~~~n~~~i~~i~~~~-~~pv~~gGGi~s~-~d-~~~l~~~G-~~~vvigs 104 (258)
T PRK01033 35 AVRIFNEKEVDELIVLD------IDASKRGSEPNYELIENLASEC-FMPLCYGGGIKTL-EQ-AKKIFSLG-VEKVSINT 104 (258)
T ss_pred HHHHHHHcCCCEEEEEE------CCCCcCCCcccHHHHHHHHHhC-CCCEEECCCCCCH-HH-HHHHHHCC-CCEEEECh
Confidence 45567788998865543 3211 1111233344444322 2455444322233 44 34455777 88876653
Q ss_pred cc--CCCChhhHhhhCCCCCEEEEEEeeCCCC-----------C----CCCHHHHHHHHHHHhhhcCCCcEEEe--CCCC
Q 003819 269 IR--GTKTLDLIKTEFPLGKYLFAGVVDGRNI-----------W----ANDLASSLTTLQDLAGTVGKDKVVVS--TSCS 329 (793)
Q Consensus 269 ~~--~~~~l~~l~~~~p~~k~l~lGvVdgrn~-----------w----~ed~~~i~~~i~~~~~~v~~e~l~vs--psCg 329 (793)
.. ++.-+..+.+.+++++ ++++| |.|+. | ..++.+.++++++ .|.+.+.+. +..|
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~-i~vsi-D~k~g~~~~~~v~~~gw~~~~~~~~~e~~~~~~~----~g~~~ii~~~i~~~G 178 (258)
T PRK01033 105 AALEDPDLITEAAERFGSQS-VVVSI-DVKKNLGGKFDVYTHNGTKKLKKDPLELAKEYEA----LGAGEILLNSIDRDG 178 (258)
T ss_pred HHhcCHHHHHHHHHHhCCCc-EEEEE-EEecCCCCcEEEEEcCCeecCCCCHHHHHHHHHH----cCCCEEEEEccCCCC
Confidence 21 2223333433465444 44444 65543 3 2245555444433 455777776 5555
Q ss_pred Cccc
Q 003819 330 LLHT 333 (793)
Q Consensus 330 L~hv 333 (793)
...=
T Consensus 179 ~~~G 182 (258)
T PRK01033 179 TMKG 182 (258)
T ss_pred CcCC
Confidence 5443
No 257
>TIGR03858 LLM_2I7G probable oxidoreductase, LLM family. This model describes a highly conserved, somewhat broadly distributed family withing the luciferase-like monooxygenase (LLM) superfamily. Most members are from species incapable of synthesizing coenzyme F420, bound by some members of the LLM superfamily. Members, therefore, are more likely to use FMN as a cofactor.
Probab=22.13 E-value=1.4e+02 Score=33.03 Aligned_cols=46 Identities=17% Similarity=0.201 Sum_probs=34.9
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCCcEEEcCCCCCCCCChhHHHHHHHHH
Q 003819 731 PRIPSTEEIADRINKMLAVLESNILWVNPDCGLKTRKYSEVKPALSNM 778 (793)
Q Consensus 731 ~~ves~eev~~~i~~al~~i~~~~l~vsPdCGL~t~~~~~~~~kL~~m 778 (793)
.-+.|||+|+++|++..+..|.+.+.+.+++|. .+.++..+.|+.+
T Consensus 283 ~lvGtPe~V~e~i~~~~~~~G~d~~~l~~~~~~--~~~~~~~~~i~~f 328 (337)
T TIGR03858 283 LYVGSPETVAEKIADTIETLGLDRFMLHYSVGS--LPHEQVMRAIELY 328 (337)
T ss_pred eeeeCHHHHHHHHHHHHHHcCCCeEEEEecCCC--CCHHHHHHHHHHH
Confidence 346899999999999887779999999998763 2555555555544
No 258
>cd01301 rDP_like renal dipeptidase (rDP), best studied in mammals and also called membrane or microsomal dipeptidase, is a membrane-bound glycoprotein hydrolyzing dipeptides and is involved in hydrolytic metabolism of penem and carbapenem beta-lactam antibiotics. Although the biological function of the enzyme is still unknown, it has been suggested to play a role in the renal glutathione metabolism.
Probab=22.09 E-value=1.1e+03 Score=26.02 Aligned_cols=132 Identities=14% Similarity=0.209 Sum_probs=73.6
Q ss_pred HHHHHHHcCCcEEEEc---CcccccCCCC-CcccHHHHHHHHHHHHHHHhcCCCCCCeE-EEEeCCCCchhHHHHHHcCC
Q 003819 618 EVEDLEKAGITVIQID---EAALREGLPL-RKSEQDFYLKWAVHSFRITNCGVQDTTQV-HTHMCYSNFNDIIHSIMDMD 692 (793)
Q Consensus 618 ev~~L~~aGv~~IQID---EPal~~~l~l-~~~~~~~~l~~av~a~~~~~~~v~~~~~I-~lH~C~g~~~~i~~~l~~l~ 692 (793)
.++.+.+.|+++||+- +=.+..++.. .......+-..+++..+.. ++ -| .-|++... .++.+.-..
T Consensus 118 ~l~~~~~lGvR~i~Lt~n~~N~~a~g~~~~~~~GLt~~G~~vv~~mn~l--Gm----iiDvSH~s~~~---~~dv~~~s~ 188 (309)
T cd01301 118 LLRLLYRLGVRYLGLTWNGDNKFADGCGEKRGGGLTPFGKELVREMNRL--GI----IIDLSHLSERT---FWDVLDISN 188 (309)
T ss_pred HHHHHHHcCCeEEEeeecCCCccccCCCCCCCCCCCHHHHHHHHHHHHc--CC----EEEcCCCCHHH---HHHHHHhcC
Confidence 5677888999999986 2334432211 1122334445555555442 11 11 23444222 233332222
Q ss_pred CcEEE--------EecCCC-ChhhHHHhhhcccCCCeEeeeeecCCC--CCCCCHHHHHHHHHHHHhhcCCCcEEEcCCC
Q 003819 693 ADVIT--------IENSRS-DEKLLSVFREGVKYRAGIGPGVYDIHS--PRIPSTEEIADRINKMLAVLESNILWVNPDC 761 (793)
Q Consensus 693 ~D~is--------iE~~r~-~~~~L~~~~~~~~~~~~i~~GVvD~~s--~~ves~eev~~~i~~al~~i~~~~l~vsPdC 761 (793)
.-+|. .+..|+ ..+.++.+.+ .+..||+-.+...- ....+++++++-|+-+.+.+|.+.+.+.+|=
T Consensus 189 ~PviaSHsn~ral~~h~RNltD~~i~~ia~---~GGvigi~~~~~fl~~~~~~~~~~~~~hi~~i~~l~G~dhVgiGsDf 265 (309)
T cd01301 189 APVIASHSNARALCDHPRNLTDAQLKAIAE---TGGVIGVNFYPAFLSPGADATLDDVVRHIDYIVDLIGIDHVGLGSDF 265 (309)
T ss_pred CCEEEeccChHHhcCCCCCCCHHHHHHHHH---cCCEEEEeeeHHHhCCCCCCCHHHHHHHHHHHHHhcCCCeEEECccc
Confidence 22221 112333 4455777766 24457666655432 2357999999999999999999999999983
No 259
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=21.85 E-value=1.2e+03 Score=26.35 Aligned_cols=74 Identities=19% Similarity=0.179 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHcCCcEEEEcCcccccCCCCCcccHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCchhHHHHHHcCCC
Q 003819 614 AIKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDA 693 (793)
Q Consensus 614 al~~ev~~L~~aGv~~IQIDEPal~~~l~l~~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~C~g~~~~i~~~l~~l~~ 693 (793)
.+.++++.+.+.|++-|.|= .+.+....+ -+++..++..++. ..+ .|++|.. .-..+-+..|.+.++
T Consensus 108 EI~~~a~~~~~~Gv~~i~lv-----gGe~p~~~~-~e~l~~~i~~Ik~---~~p---~i~i~~g-~lt~e~l~~Lk~aGv 174 (371)
T PRK09240 108 EIEREMAAIKKLGFEHILLL-----TGEHEAKVG-VDYIRRALPIARE---YFS---SVSIEVQ-PLSEEEYAELVELGL 174 (371)
T ss_pred HHHHHHHHHHhCCCCEEEEe-----eCCCCCCCC-HHHHHHHHHHHHH---hCC---CceeccC-CCCHHHHHHHHHcCC
Confidence 34455666778899876652 111111111 2344444444443 332 2344432 223466788999999
Q ss_pred cEEE--Eec
Q 003819 694 DVIT--IEN 700 (793)
Q Consensus 694 D~is--iE~ 700 (793)
+.++ +|+
T Consensus 175 ~r~~i~lET 183 (371)
T PRK09240 175 DGVTVYQET 183 (371)
T ss_pred CEEEEEEec
Confidence 9888 565
No 260
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=21.63 E-value=9.2e+02 Score=25.30 Aligned_cols=20 Identities=15% Similarity=0.151 Sum_probs=17.2
Q ss_pred CchhHHHHHHcCCCcEEEEe
Q 003819 680 NFNDIIHSIMDMDADVITIE 699 (793)
Q Consensus 680 ~~~~i~~~l~~l~~D~isiE 699 (793)
++.+.++.+.+++++.+-+-
T Consensus 14 ~l~~~l~~~~~~G~~~vEl~ 33 (275)
T PRK09856 14 PIEHAFRDASELGYDGIEIW 33 (275)
T ss_pred CHHHHHHHHHHcCCCEEEEc
Confidence 47788999999999998884
No 261
>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....
Probab=21.58 E-value=8.9e+02 Score=24.89 Aligned_cols=127 Identities=17% Similarity=0.224 Sum_probs=64.6
Q ss_pred HHHHHHHHHHcCCcEEEEcCcccccCCCCCcccHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCC-----CC-------ch
Q 003819 615 IKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCY-----SN-------FN 682 (793)
Q Consensus 615 l~~ev~~L~~aGv~~IQIDEPal~~~l~l~~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~C~-----g~-------~~ 682 (793)
+..++..+...|+++|.+.==.+.. .-...+...+..++..+ .+ .++++ |. |. +-
T Consensus 12 ~~~~~~~~~~~~~D~vElRlD~l~~-------~~~~~~~~~l~~lr~~~-~~----piI~T-~R~~~eGG~~~~~~~~~~ 78 (224)
T PF01487_consen 12 LLAELEEAESSGADAVELRLDYLEN-------DSAEDISEQLAELRRSL-DL----PIIFT-VRTKEEGGRFQGSEEEYL 78 (224)
T ss_dssp HHHHHHHHHHTTTSEEEEEGGGSTT-------TSHHHHHHHHHHHHHHC-TS----EEEEE---BGGGTSSBSS-HHHHH
T ss_pred HHHHHHHHHhcCCCEEEEEeccccc-------cChHHHHHHHHHHHHhC-CC----CEEEE-ecccccCCCCcCCHHHHH
Confidence 3455666666799988765222221 11233344444555444 33 35544 43 32 33
Q ss_pred hHHHHHHcCCCcEEEEecCCCChhhHHHhhhcccCCCeEeeeeecCCC-CCCCCHHHHHHHHHHHHhhcCCC--cEEEcC
Q 003819 683 DIIHSIMDMDADVITIENSRSDEKLLSVFREGVKYRAGIGPGVYDIHS-PRIPSTEEIADRINKMLAVLESN--ILWVNP 759 (793)
Q Consensus 683 ~i~~~l~~l~~D~isiE~~r~~~~~L~~~~~~~~~~~~i~~GVvD~~s-~~ves~eev~~~i~~al~~i~~~--~l~vsP 759 (793)
+++..+.++++|.+.+|....+......... ......|.. +-|+ ...|+-+++...++++.+ .|++ ++.+.|
T Consensus 79 ~ll~~~~~~~~d~iDiE~~~~~~~~~~~~~~-~~~~~~iI~---S~H~f~~tp~~~~l~~~~~~~~~-~gadivKia~~~ 153 (224)
T PF01487_consen 79 ELLERAIRLGPDYIDIELDLFPDDLKSRLAA-RKGGTKIIL---SYHDFEKTPSWEELIELLEEMQE-LGADIVKIAVMA 153 (224)
T ss_dssp HHHHHHHHHTSSEEEEEGGCCHHHHHHHHHH-HHTTSEEEE---EEEESS---THHHHHHHHHHHHH-TT-SEEEEEEE-
T ss_pred HHHHHHHHcCCCEEEEEcccchhHHHHHHHH-hhCCCeEEE---EeccCCCCCCHHHHHHHHHHHHh-cCCCeEEEEecc
Confidence 7888888899999999976432211111111 112233322 2242 345677889898888875 4555 444444
No 262
>TIGR00970 leuA_yeast 2-isopropylmalate synthase, yeast type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases as found in yeasts and in a minority of studied bacteria.
Probab=21.38 E-value=3.6e+02 Score=32.48 Aligned_cols=97 Identities=14% Similarity=0.089 Sum_probs=55.5
Q ss_pred HHHHHHcCCcEEEEcCcccccCCCCCcccHHHHHHHHHHHHHHHhcC--CCCCCeE--EEEeCCCCchhHHHHHHcCCCc
Q 003819 619 VEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCG--VQDTTQV--HTHMCYSNFNDIIHSIMDMDAD 694 (793)
Q Consensus 619 v~~L~~aGv~~IQIDEPal~~~l~l~~~~~~~~l~~av~a~~~~~~~--v~~~~~I--~lH~C~g~~~~i~~~l~~l~~D 694 (793)
++.|.++|++.|.+==|+-. +.+ . ++++.+.+. +++.+.+ ..+...++.+..++.+...+.+
T Consensus 54 a~~L~~~Gvd~IE~Gfp~~s---------~~D-~----e~v~~i~~~~l~~~~~~i~al~~~~~~did~a~~a~~~~~~~ 119 (564)
T TIGR00970 54 FDLLVRIGFKEIEVGFPSAS---------QTD-F----DFVREIIEQGAIPDDVTIQVLTQSREELIERTFEALSGAKRA 119 (564)
T ss_pred HHHHHHcCCCEEEEeCCCCC---------HHH-H----HHHHHHHHhcCCCCCcEEEEEcCCchhhHHHHHHHhcCCCCC
Confidence 45678899999988766643 111 1 223333222 2222333 4444445566666666677777
Q ss_pred EEEEecCCCChhhHHHhhhcccCCCeEeeeeecCCCCCCCCHHHHHHHHHHHHhhc
Q 003819 695 VITIENSRSDEKLLSVFREGVKYRAGIGPGVYDIHSPRIPSTEEIADRINKMLAVL 750 (793)
Q Consensus 695 ~isiE~~r~~~~~L~~~~~~~~~~~~i~~GVvD~~s~~ves~eev~~~i~~al~~i 750 (793)
.+++=.+.|+.+....++ -|.+++.+.+.++++++
T Consensus 120 ~v~i~~~~Sd~h~~~~l~---------------------~s~ee~l~~~~~~v~~a 154 (564)
T TIGR00970 120 TVHFYNATSILFREVVFR---------------------ASRAEVQAIATDGTKLV 154 (564)
T ss_pred EEEEEEcCCHHHHHHHhC---------------------CCHHHHHHHHHHHHHHH
Confidence 888887776544323222 25677777777775554
No 263
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=21.34 E-value=3.6e+02 Score=29.46 Aligned_cols=64 Identities=16% Similarity=0.184 Sum_probs=38.9
Q ss_pred HHHHHHHHCCCCEEEeeccccccCCChHHHHHHHHHHHHHHhccCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEEec
Q 003819 190 EVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLI 269 (793)
Q Consensus 190 ~~l~~L~~aG~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~lp~Vd~l~lD~~ 269 (793)
+++.+..++|++.||+| +.+.++ ++++...+.+ ...+-.+ |++..+++..+..+. ||.|..=..
T Consensus 204 ee~~ea~~~gaDiImLD------n~s~e~---l~~av~~~~~---~~~leaS---GgI~~~ni~~yA~tG-VD~Is~gal 267 (281)
T PRK06543 204 DQIEPVLAAGVDTIMLD------NFSLDD---LREGVELVDG---RAIVEAS---GNVNLNTVGAIASTG-VDVISVGAL 267 (281)
T ss_pred HHHHHHHhcCCCEEEEC------CCCHHH---HHHHHHHhCC---CeEEEEE---CCCCHHHHHHHHhcC-CCEEEeCcc
Confidence 34455668899999999 344433 3334443322 2222222 666457788888888 998876543
No 264
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=21.32 E-value=1e+03 Score=25.48 Aligned_cols=126 Identities=15% Similarity=0.217 Sum_probs=75.7
Q ss_pred HHHHHHHHCCCCEEEeeccccccCCChHHHHHHHHHHHHHHhccCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEEec
Q 003819 190 EVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLI 269 (793)
Q Consensus 190 ~~l~~L~~aG~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~lp~Vd~l~lD~~ 269 (793)
++++.|.++|++.|++=-|... +.+.+..+. +........+... .-.+. . -++...+.. ++.+++=+.
T Consensus 26 ~i~~~L~~~Gv~~IEvG~P~~~----~~~~~~~~~----l~~~~~~~~v~~~-~r~~~-~-di~~a~~~g-~~~i~i~~~ 93 (262)
T cd07948 26 EIAKALDAFGVDYIELTSPAAS----PQSRADCEA----IAKLGLKAKILTH-IRCHM-D-DARIAVETG-VDGVDLVFG 93 (262)
T ss_pred HHHHHHHHcCCCEEEEECCCCC----HHHHHHHHH----HHhCCCCCcEEEE-ecCCH-H-HHHHHHHcC-cCEEEEEEe
Confidence 4667788999999999877654 223333322 2211111333211 11222 2 255666777 999998764
Q ss_pred cC------------CCChhhHhhh--C--CCCCEEEEEEeeCCCCCCCCHHHHHHHHHHHhhhcCCCcEEEeCCCCCc
Q 003819 270 RG------------TKTLDLIKTE--F--PLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVSTSCSLL 331 (793)
Q Consensus 270 ~~------------~~~l~~l~~~--~--p~~k~l~lGvVdgrn~w~ed~~~i~~~i~~~~~~v~~e~l~vspsCgL~ 331 (793)
-+ .+.++.+.+. . ..+..+.+++.| ..+.+++.+.+.++.+.+ .|++++++.-.-|.+
T Consensus 94 ~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~ed---a~r~~~~~l~~~~~~~~~-~g~~~i~l~Dt~G~~ 167 (262)
T cd07948 94 TSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSSED---SFRSDLVDLLRVYRAVDK-LGVNRVGIADTVGIA 167 (262)
T ss_pred cCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEe---eCCCCHHHHHHHHHHHHH-cCCCEEEECCcCCCC
Confidence 21 1223333221 1 235689999986 456778888888888865 588999999988876
No 265
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=21.26 E-value=3.3e+02 Score=29.38 Aligned_cols=59 Identities=17% Similarity=0.178 Sum_probs=35.7
Q ss_pred HHHHCCCCEEEeeccccccCCChHHHHHHHHHHHHHHhccCCCcEEEEeccCCCchhhHHHHhcCCCccEEEE
Q 003819 194 ELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGF 266 (793)
Q Consensus 194 ~L~~aG~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~lp~Vd~l~l 266 (793)
+..++|+++||+|-.. . +.++++.+.+.+. +++.+... |++..++++.+.+.. ||++.+
T Consensus 196 ~A~~~gaD~I~ld~~~------~---e~l~~~v~~i~~~-~~i~i~as---GGIt~~ni~~~a~~G-ad~Isv 254 (269)
T cd01568 196 EALEAGADIIMLDNMS------P---EELKEAVKLLKGL-PRVLLEAS---GGITLENIRAYAETG-VDVIST 254 (269)
T ss_pred HHHHcCCCEEEECCCC------H---HHHHHHHHHhccC-CCeEEEEE---CCCCHHHHHHHHHcC-CCEEEE
Confidence 3346799999998522 2 3333333333221 12333333 666457888999999 999986
No 266
>PTZ00413 lipoate synthase; Provisional
Probab=21.17 E-value=1.3e+03 Score=26.56 Aligned_cols=125 Identities=14% Similarity=0.175 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHcCCcEEEEcCcccccCCCCCcccHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCc---hhHHHHHH
Q 003819 613 LAIKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNF---NDIIHSIM 689 (793)
Q Consensus 613 ~al~~ev~~L~~aGv~~IQIDEPal~~~l~l~~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~C~g~~---~~i~~~l~ 689 (793)
+.+.+..+...+.|++++ |==-.-+.+++ +.-.+...++++.+-+..+ .+.+..+-|+| .+.+..|.
T Consensus 180 eEp~~vA~av~~~Gl~~~-VVTSv~RDDL~------D~ga~~~a~~I~~Ir~~~p---~~~IevligDf~g~~e~l~~L~ 249 (398)
T PTZ00413 180 NEPEKVAKAVAEMGVDYI-VMTMVDRDDLP------DGGASHVARCVELIKESNP---ELLLEALVGDFHGDLKSVEKLA 249 (398)
T ss_pred HHHHHHHHHHHHcCCCEE-EEEEEcCCCCC------hhhHHHHHHHHHHHHccCC---CCeEEEcCCccccCHHHHHHHH
Q ss_pred cCCCcEEE--EecCCCC--------------hhhHHHhhhcc-------cCCCeEeeeeecCCCCCCCCHHHHHHHHHHH
Q 003819 690 DMDADVIT--IENSRSD--------------EKLLSVFREGV-------KYRAGIGPGVYDIHSPRIPSTEEIADRINKM 746 (793)
Q Consensus 690 ~l~~D~is--iE~~r~~--------------~~~L~~~~~~~-------~~~~~i~~GVvD~~s~~ves~eev~~~i~~a 746 (793)
+.++|+++ +|++++- .+.|+..++ . ..+-.||+| |+.+|+.+.+..+
T Consensus 250 eAG~dvynHNLETv~rLyp~VRt~~atYe~sLe~Lr~AKe-~f~~gi~tcSGiIVGLG---------ET~eEvie~m~dL 319 (398)
T PTZ00413 250 NSPLSVYAHNIECVERITPYVRDRRASYRQSLKVLEHVKE-FTNGAMLTKSSIMLGLG---------ETEEEVRQTLRDL 319 (398)
T ss_pred hcCCCEEecccccCHhHHHHHccCcCCHHHHHHHHHHHHH-HhcCCceEeeeeEecCC---------CCHHHHHHHHHHH
Q ss_pred HhhcCCCcEEEc
Q 003819 747 LAVLESNILWVN 758 (793)
Q Consensus 747 l~~i~~~~l~vs 758 (793)
.+ ++.+-+-++
T Consensus 320 re-lGVDivtIG 330 (398)
T PTZ00413 320 RT-AGVSAVTLG 330 (398)
T ss_pred HH-cCCcEEeec
No 267
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=21.08 E-value=3.6e+02 Score=29.70 Aligned_cols=64 Identities=14% Similarity=0.196 Sum_probs=39.7
Q ss_pred HHHHHHHHCCCCEEEeeccccccCCChHHHHHHHHHHHHHHhccCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEEec
Q 003819 190 EVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLI 269 (793)
Q Consensus 190 ~~l~~L~~aG~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~lp~Vd~l~lD~~ 269 (793)
+++++..++|++.||+| +.+.+++ +++...+.. ++.+--- |++..+++..+..+. ||.|..=..
T Consensus 216 eea~eA~~aGaDiImLD------nmspe~l---~~av~~~~~-----~~~lEaS-GGIt~~ni~~yA~tG-VD~IS~gal 279 (294)
T PRK06978 216 AQLETALAHGAQSVLLD------NFTLDMM---REAVRVTAG-----RAVLEVS-GGVNFDTVRAFAETG-VDRISIGAL 279 (294)
T ss_pred HHHHHHHHcCCCEEEEC------CCCHHHH---HHHHHhhcC-----CeEEEEE-CCCCHHHHHHHHhcC-CCEEEeCcc
Confidence 44566678999999999 3444333 334333321 2333222 666457788888888 998877654
No 268
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=21.04 E-value=1e+03 Score=26.22 Aligned_cols=93 Identities=15% Similarity=0.203 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCcEEEEcCcc---cccCC-CC---C----cccHHHHHHHHHHHHHHHhcCCCCCCeEEE
Q 003819 606 ETCYQIALAIKDEVEDLEKAGITVIQIDEAA---LREGL-PL---R----KSEQDFYLKWAVHSFRITNCGVQDTTQVHT 674 (793)
Q Consensus 606 e~~~~lA~al~~ev~~L~~aGv~~IQIDEPa---l~~~l-~l---~----~~~~~~~l~~av~a~~~~~~~v~~~~~I~l 674 (793)
+-..++.+.+.+-.+.+.++|++.|+|.--- +...| |. + ..+.+...++.++.++.+-+.++++..|.+
T Consensus 142 ~eI~~~i~~~~~aA~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~avG~d~~v~v 221 (338)
T cd04733 142 EEIEDVIDRFAHAARLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAVGPGFPVGI 221 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEE
Confidence 3445666677777788889999999998432 11111 11 1 112334455555555555555655555666
Q ss_pred EeCC------C-Cc---hhHHHHHHcCCCcEEEE
Q 003819 675 HMCY------S-NF---NDIIHSIMDMDADVITI 698 (793)
Q Consensus 675 H~C~------g-~~---~~i~~~l~~l~~D~isi 698 (793)
-+.. | +. -.+++.|.+.++|.|++
T Consensus 222 ris~~~~~~~g~~~eea~~ia~~Le~~Gvd~iev 255 (338)
T cd04733 222 KLNSADFQRGGFTEEDALEVVEALEEAGVDLVEL 255 (338)
T ss_pred EEcHHHcCCCCCCHHHHHHHHHHHHHcCCCEEEe
Confidence 6541 1 11 25667777888888875
No 269
>COG0320 LipA Lipoate synthase [Coenzyme metabolism]
Probab=20.75 E-value=1.1e+03 Score=25.77 Aligned_cols=128 Identities=18% Similarity=0.331 Sum_probs=80.4
Q ss_pred HHHCCCCEEEeecccccc-CCChHHHHHHHHHHHHHHhccCCCcE-EEEeccCCCchhhHHHHhcCCCccEEEEEe--c-
Q 003819 195 LKAAGATWIQFDEPTLVL-DLDSHKLQAFSDAYSELQSSLSGLNV-LIETYFADVPAETYKILTSLKGVTGFGFDL--I- 269 (793)
Q Consensus 195 L~~aG~~~VQiDEP~L~~-d~~~~~~~~~~~~y~~l~~~~~~~~i-~l~tyfg~~~~~~~~~l~~lp~Vd~l~lD~--~- 269 (793)
..+.|.+||-|-- ... |+.+.-...|.+....+.+..|...| +|..=|.+. ...++.+.+.+ .|.|.-.. +
T Consensus 109 V~~mgLkyVViTs--VdRDDL~DGGA~hfa~~i~~Ire~~P~t~iEvL~PDF~G~-~~al~~v~~~~-pdV~nHNvETVp 184 (306)
T COG0320 109 VKDMGLKYVVITS--VDRDDLPDGGAQHFAECIRAIRELNPQTTIEVLTPDFRGN-DDALEIVADAG-PDVFNHNVETVP 184 (306)
T ss_pred HHHhCCCeEEEEe--eccccccccchHHHHHHHHHHHhhCCCceEEEeCccccCC-HHHHHHHHhcC-cchhhcccccch
Confidence 4466999988752 111 45555567888888888765443333 233345545 67788888887 77776443 2
Q ss_pred ------cC----CCChhhHhh--h----CCCCCEEEEEEeeCCCCCCCCHHHHHHHHHHHhhhcCCCcEEE----eCCCC
Q 003819 270 ------RG----TKTLDLIKT--E----FPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVV----STSCS 329 (793)
Q Consensus 270 ------~~----~~~l~~l~~--~----~p~~k~l~lGvVdgrn~w~ed~~~i~~~i~~~~~~v~~e~l~v----spsCg 329 (793)
+. ...|..|.. . ++....|.+|+ =|+.+++++.++.+.+ .|-|-|.| .| |
T Consensus 185 rL~~~VRp~A~Y~~SL~~L~~~k~~~P~i~TKSgiMlGL-------GEt~~Ev~e~m~DLr~-~gvdilTiGQYlqP--S 254 (306)
T COG0320 185 RLYPRVRPGATYERSLSLLERAKELGPDIPTKSGLMVGL-------GETDEEVIEVMDDLRS-AGVDILTIGQYLQP--S 254 (306)
T ss_pred hcccccCCCCcHHHHHHHHHHHHHhCCCcccccceeeec-------CCcHHHHHHHHHHHHH-cCCCEEEeccccCC--c
Confidence 21 124554443 1 33444577777 4889999999999876 45566544 56 7
Q ss_pred Ccccccc
Q 003819 330 LLHTAVD 336 (793)
Q Consensus 330 L~hvP~~ 336 (793)
..|+|+.
T Consensus 255 ~~HlpV~ 261 (306)
T COG0320 255 RKHLPVQ 261 (306)
T ss_pred cccCCce
Confidence 8899985
No 270
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=20.44 E-value=3.7e+02 Score=29.03 Aligned_cols=63 Identities=16% Similarity=0.186 Sum_probs=39.5
Q ss_pred HHHHHHHCCCCEEEeeccccccCCChHHHHHHHHHHHHHHhccCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEEec
Q 003819 191 VVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLI 269 (793)
Q Consensus 191 ~l~~L~~aG~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~lp~Vd~l~lD~~ 269 (793)
++.+..++|+++||+|- + . .+.++++.+.+.+ ++.+... |++..++++.+.+.. ||++.+=..
T Consensus 194 ea~~A~~~gaDyI~ld~-~-----~---~e~l~~~~~~~~~---~ipi~Ai---GGI~~~ni~~~a~~G-vd~Iav~sl 256 (268)
T cd01572 194 QLKEALEAGADIIMLDN-M-----S---PEELREAVALLKG---RVLLEAS---GGITLENIRAYAETG-VDYISVGAL 256 (268)
T ss_pred HHHHHHHcCCCEEEECC-c-----C---HHHHHHHHHHcCC---CCcEEEE---CCCCHHHHHHHHHcC-CCEEEEEee
Confidence 44555678999999983 2 1 2344444443321 2334333 666457888999998 999887543
Done!