Query 003819
Match_columns 793
No_of_seqs 391 out of 2075
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 05:07:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003819.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003819hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ppg_A 5-methyltetrahydroptero 100.0 2E-196 6E-201 1716.1 74.8 751 1-789 24-789 (789)
2 1t7l_A 5-methyltetrahydroptero 100.0 4E-182 1E-186 1587.6 68.2 728 2-790 34-765 (766)
3 1u1j_A 5-methyltetrahydroptero 100.0 2E-177 7E-182 1579.2 72.9 764 1-793 1-765 (765)
4 2nq5_A 5-methyltetrahydroptero 100.0 2E-175 6E-180 1557.5 66.6 741 1-791 4-747 (755)
5 3rpd_A Methionine synthase (B1 100.0 2.9E-77 1E-81 657.2 30.7 330 419-791 5-355 (357)
6 1ypx_A Putative vitamin-B12 in 100.0 6.2E-72 2.1E-76 620.5 25.3 329 429-790 4-369 (375)
7 1t7l_A 5-methyltetrahydroptero 100.0 2.1E-54 7.2E-59 507.6 28.4 314 2-356 438-759 (766)
8 3rpd_A Methionine synthase (B1 100.0 2.3E-49 7.9E-54 435.6 26.2 312 2-369 20-350 (357)
9 1ypx_A Putative vitamin-B12 in 100.0 4.1E-48 1.4E-52 429.4 24.9 325 2-370 9-366 (375)
10 1u1j_A 5-methyltetrahydroptero 100.0 3.6E-45 1.2E-49 437.7 35.8 313 435-787 3-370 (765)
11 3ppg_A 5-methyltetrahydroptero 100.0 2.7E-42 9.2E-47 406.9 29.3 312 2-369 465-786 (789)
12 2nq5_A 5-methyltetrahydroptero 100.0 2.8E-41 9.7E-46 402.8 30.6 314 432-786 3-360 (755)
13 2inf_A URO-D, UPD, uroporphyri 99.7 1.1E-15 3.9E-20 168.4 16.9 201 569-788 133-352 (359)
14 1j93_A UROD, uroporphyrinogen 99.6 7.8E-16 2.7E-20 169.3 11.4 200 569-785 132-351 (353)
15 3cyv_A URO-D, UPD, uroporphyri 99.5 1.9E-13 6.5E-18 150.2 17.9 194 579-789 138-352 (354)
16 1r3s_A URO-D, uroporphyrinogen 99.5 4.6E-13 1.6E-17 148.0 18.9 194 579-789 148-364 (367)
17 2eja_A URO-D, UPD, uroporphyri 99.4 8.5E-13 2.9E-17 144.2 15.1 190 577-785 128-335 (338)
18 4ay7_A Methylcobalamin\: coenz 99.3 3.5E-11 1.2E-15 131.9 19.7 190 579-785 147-346 (348)
19 4exq_A UPD, URO-D, uroporphyri 99.3 2.6E-11 8.9E-16 134.0 17.5 193 580-790 149-363 (368)
20 1j93_A UROD, uroporphyrinogen 99.1 2.4E-09 8.3E-14 117.4 18.2 187 135-331 128-333 (353)
21 2inf_A URO-D, UPD, uroporphyri 99.0 7.3E-09 2.5E-13 114.0 19.7 183 135-331 129-331 (359)
22 3cyv_A URO-D, UPD, uroporphyri 98.4 6.5E-06 2.2E-10 90.1 18.6 186 136-331 123-330 (354)
23 2eja_A URO-D, UPD, uroporphyri 98.4 9E-06 3.1E-10 88.4 18.0 182 136-330 116-316 (338)
24 1r3s_A URO-D, uroporphyrinogen 98.3 1.2E-05 4.1E-10 88.5 18.5 185 137-331 134-342 (367)
25 4exq_A UPD, URO-D, uroporphyri 97.8 0.00086 2.9E-08 73.8 19.9 172 150-331 150-340 (368)
26 4ay7_A Methylcobalamin\: coenz 97.4 0.0053 1.8E-07 66.8 18.6 185 137-331 133-328 (348)
27 3cu2_A Ribulose-5-phosphate 3- 93.0 0.52 1.8E-05 48.4 11.0 80 615-713 28-115 (237)
28 1tx2_A DHPS, dihydropteroate s 92.1 1.9 6.5E-05 45.7 14.3 152 614-778 64-223 (297)
29 1aj0_A DHPS, dihydropteroate s 91.9 2.8 9.5E-05 44.1 15.1 153 615-778 40-204 (282)
30 3inp_A D-ribulose-phosphate 3- 91.1 1.8 6.2E-05 44.6 12.5 95 614-723 41-139 (246)
31 3ctl_A D-allulose-6-phosphate 91.1 0.95 3.3E-05 46.2 10.3 141 615-782 15-161 (231)
32 1tqx_A D-ribulose-5-phosphate 89.5 0.89 3E-05 46.3 8.4 95 615-731 20-126 (227)
33 1eye_A DHPS 1, dihydropteroate 88.4 12 0.00042 39.1 16.4 153 615-779 31-197 (280)
34 3ovp_A Ribulose-phosphate 3-ep 87.9 4.3 0.00015 41.2 12.2 97 614-723 18-117 (228)
35 1tqj_A Ribulose-phosphate 3-ep 87.8 1.2 4.1E-05 45.3 8.1 97 615-725 19-119 (230)
36 3tr9_A Dihydropteroate synthas 80.4 25 0.00085 37.4 14.4 153 615-778 51-221 (314)
37 2vp8_A Dihydropteroate synthas 79.7 21 0.0007 38.1 13.6 151 616-778 68-236 (318)
38 3nl6_A Thiamine biosynthetic b 79.4 2.9 0.0001 48.0 7.4 108 190-326 29-139 (540)
39 2y5s_A DHPS, dihydropteroate s 79.2 57 0.002 34.2 16.7 151 616-778 49-213 (294)
40 3o63_A Probable thiamine-phosp 79.1 27 0.00091 35.7 13.8 112 190-326 47-163 (243)
41 4hb7_A Dihydropteroate synthas 78.1 61 0.0021 33.6 16.1 147 618-778 35-189 (270)
42 2yci_X 5-methyltetrahydrofolat 74.9 50 0.0017 34.2 14.7 146 616-781 37-192 (271)
43 2vef_A Dihydropteroate synthas 74.0 35 0.0012 36.2 13.5 91 616-713 36-127 (314)
44 1ur4_A Galactanase; hydrolase, 73.1 1E+02 0.0035 33.7 17.3 148 603-785 131-310 (399)
45 3o63_A Probable thiamine-phosp 71.5 74 0.0025 32.3 14.8 110 619-759 49-163 (243)
46 1q7z_A 5-methyltetrahydrofolat 70.3 14 0.00048 42.6 10.0 137 182-330 122-275 (566)
47 1q7z_A 5-methyltetrahydrofolat 69.6 51 0.0018 37.9 14.5 211 497-763 44-275 (566)
48 3mcm_A 2-amino-4-hydroxy-6-hyd 69.0 32 0.0011 38.3 12.2 151 616-778 215-385 (442)
49 1h1y_A D-ribulose-5-phosphate 68.3 17 0.00057 36.4 9.0 97 615-725 21-120 (228)
50 1xi3_A Thiamine phosphate pyro 67.9 90 0.0031 30.1 15.0 67 616-701 29-95 (215)
51 4dnh_A Uncharacterized protein 66.6 16 0.00053 38.9 8.3 107 180-291 131-255 (396)
52 1rpx_A Protein (ribulose-phosp 59.3 16 0.00056 36.3 7.0 72 616-701 26-100 (230)
53 2ob3_A Parathion hydrolase; me 59.2 67 0.0023 33.8 12.2 89 671-763 163-270 (330)
54 2dqw_A Dihydropteroate synthas 58.8 93 0.0032 32.6 12.8 148 617-778 56-216 (294)
55 3nl6_A Thiamine biosynthetic b 58.5 27 0.00094 39.9 9.4 66 618-702 30-95 (540)
56 3gtx_A Organophosphorus hydrol 58.2 48 0.0016 35.4 10.8 129 198-331 151-284 (339)
57 1ur4_A Galactanase; hydrolase, 56.8 1.4E+02 0.0049 32.5 14.5 125 176-330 131-268 (399)
58 3rhg_A Putative phophotriester 55.9 1.2E+02 0.0043 32.5 13.7 93 670-765 194-299 (365)
59 3rhg_A Putative phophotriester 55.6 1.5E+02 0.0051 31.9 14.3 192 135-331 75-298 (365)
60 2tps_A Protein (thiamin phosph 55.2 80 0.0027 30.9 11.3 108 189-326 34-144 (227)
61 3gtx_A Organophosphorus hydrol 54.8 1.1E+02 0.0037 32.6 12.9 144 609-764 134-284 (339)
62 3k2g_A Resiniferatoxin-binding 53.7 52 0.0018 35.5 10.2 91 671-764 205-308 (364)
63 3tn4_A Phosphotriesterase; lac 53.0 46 0.0016 35.9 9.6 109 214-329 187-302 (360)
64 2fli_A Ribulose-phosphate 3-ep 52.8 69 0.0024 31.2 10.3 95 615-725 18-116 (220)
65 2bmb_A Folic acid synthesis pr 52.3 1.1E+02 0.0039 34.8 13.0 92 617-713 253-353 (545)
66 2v82_A 2-dehydro-3-deoxy-6-pho 52.2 64 0.0022 31.4 9.9 86 616-724 22-107 (212)
67 3k13_A 5-methyltetrahydrofolat 51.4 1.6E+02 0.0056 30.8 13.3 151 614-779 38-203 (300)
68 1yad_A Regulatory protein TENI 49.9 1.9E+02 0.0065 28.1 13.8 104 192-326 35-138 (221)
69 1vzw_A Phosphoribosyl isomeras 48.4 30 0.001 34.7 6.8 121 193-326 39-167 (244)
70 1xi3_A Thiamine phosphate pyro 48.4 73 0.0025 30.8 9.6 108 189-326 29-136 (215)
71 3o1n_A 3-dehydroquinate dehydr 48.1 1.6E+02 0.0054 30.4 12.5 140 617-778 56-212 (276)
72 2y88_A Phosphoribosyl isomeras 45.5 20 0.00068 35.9 5.0 123 191-326 36-170 (244)
73 3cu2_A Ribulose-5-phosphate 3- 45.1 71 0.0024 32.3 9.0 65 190-268 30-102 (237)
74 1yad_A Regulatory protein TENI 45.0 2.3E+02 0.0077 27.6 14.0 105 619-760 35-139 (221)
75 2ob3_A Parathion hydrolase; me 44.7 2.9E+02 0.0099 28.8 14.2 125 201-330 130-270 (330)
76 3pnz_A Phosphotriesterase fami 44.5 1.5E+02 0.005 31.5 11.8 90 671-765 183-277 (330)
77 1ydn_A Hydroxymethylglutaryl-C 44.5 2.7E+02 0.0093 28.6 13.8 149 616-780 29-195 (295)
78 1vzw_A Phosphoribosyl isomeras 43.4 55 0.0019 32.6 7.9 67 620-700 39-105 (244)
79 2ffi_A 2-pyrone-4,6-dicarboxyl 41.7 2E+02 0.0069 28.8 12.1 108 670-778 138-258 (288)
80 2h9a_B CO dehydrogenase/acetyl 41.2 3.4E+02 0.012 28.5 15.8 147 614-780 75-229 (310)
81 1qo2_A Molecule: N-((5-phospho 41.2 66 0.0023 32.1 8.1 119 191-326 35-165 (241)
82 3k2g_A Resiniferatoxin-binding 41.0 72 0.0025 34.4 8.8 115 214-331 184-308 (364)
83 3pnz_A Phosphotriesterase fami 39.6 1.6E+02 0.0055 31.2 11.2 146 182-332 129-277 (330)
84 3gg7_A Uncharacterized metallo 39.6 1.2E+02 0.0042 30.8 9.9 63 309-384 178-241 (254)
85 3tn4_A Phosphotriesterase; lac 39.5 2E+02 0.0068 30.9 12.0 90 670-762 207-302 (360)
86 1qtw_A Endonuclease IV; DNA re 38.9 1.8E+02 0.0061 28.9 11.1 114 670-788 2-136 (285)
87 3ovg_A Amidohydrolase; structu 38.7 3.2E+02 0.011 29.3 13.5 111 216-331 165-278 (363)
88 2ffi_A 2-pyrone-4,6-dicarboxyl 37.3 1.8E+02 0.0062 29.1 10.9 135 190-332 96-241 (288)
89 1rd5_A Tryptophan synthase alp 36.7 3.4E+02 0.011 27.2 14.1 24 614-637 33-56 (262)
90 3ovg_A Amidohydrolase; structu 35.7 2.3E+02 0.0079 30.4 11.8 90 671-765 184-279 (363)
91 3l5l_A Xenobiotic reductase A; 35.4 2E+02 0.0068 30.8 11.2 93 608-700 153-267 (363)
92 3hgj_A Chromate reductase; TIM 34.6 2.8E+02 0.0095 29.4 12.2 93 608-700 147-260 (349)
93 1thf_D HISF protein; thermophI 34.5 55 0.0019 32.7 6.2 69 193-269 37-105 (253)
94 1tqj_A Ribulose-phosphate 3-ep 34.0 1.3E+02 0.0043 30.1 8.8 67 190-269 21-94 (230)
95 1h5y_A HISF; histidine biosynt 33.9 65 0.0022 31.8 6.6 71 190-268 37-107 (253)
96 1rpx_A Protein (ribulose-phosp 33.9 1E+02 0.0036 30.3 8.1 71 190-269 27-100 (230)
97 4i6k_A Amidohydrolase family p 33.8 59 0.002 33.4 6.5 135 190-333 109-254 (294)
98 3eol_A Isocitrate lyase; seatt 32.4 5.4E+02 0.019 28.3 16.8 94 681-788 265-368 (433)
99 3ctl_A D-allulose-6-phosphate 32.1 2.1E+02 0.0073 28.6 10.1 138 189-366 16-162 (231)
100 3gka_A N-ethylmaleimide reduct 30.8 5E+02 0.017 27.7 13.4 101 609-713 157-284 (361)
101 3kru_A NADH:flavin oxidoreduct 30.8 2.8E+02 0.0096 29.4 11.3 91 608-699 138-249 (343)
102 3tqv_A Nicotinate-nucleotide p 30.3 1.2E+02 0.0039 31.8 7.9 62 190-267 209-270 (287)
103 1lt8_A Betaine-homocysteine me 29.4 1.5E+02 0.0051 32.5 9.0 54 181-244 134-187 (406)
104 3lg3_A Isocitrate lyase; conse 29.2 6.1E+02 0.021 27.9 16.4 93 681-787 270-372 (435)
105 3l0g_A Nicotinate-nucleotide p 28.9 1.4E+02 0.0048 31.4 8.2 63 190-268 218-280 (300)
106 3l0g_A Nicotinate-nucleotide p 28.0 51 0.0018 34.7 4.7 63 617-700 218-280 (300)
107 1hjs_A Beta-1,4-galactanase; 4 28.0 5.4E+02 0.019 26.9 19.6 155 603-785 101-287 (332)
108 3paj_A Nicotinate-nucleotide p 27.9 1.4E+02 0.0047 31.7 8.0 61 191-267 243-303 (320)
109 3i4e_A Isocitrate lyase; struc 27.9 6.5E+02 0.022 27.8 18.8 94 681-788 270-373 (439)
110 1rd5_A Tryptophan synthase alp 27.9 66 0.0023 32.6 5.5 78 187-266 33-124 (262)
111 2fli_A Ribulose-phosphate 3-ep 27.7 1.4E+02 0.0047 29.0 7.7 95 189-292 19-116 (220)
112 1z41_A YQJM, probable NADH-dep 27.7 3.4E+02 0.011 28.5 11.3 85 608-699 139-249 (338)
113 3vnd_A TSA, tryptophan synthas 27.6 1.5E+02 0.005 30.6 8.1 75 188-266 34-129 (267)
114 3iix_A Biotin synthetase, puta 27.4 5.3E+02 0.018 26.6 13.0 129 192-335 93-238 (348)
115 1qpo_A Quinolinate acid phosph 27.4 1.3E+02 0.0044 31.3 7.7 64 191-267 206-269 (284)
116 1vhc_A Putative KHG/KDPG aldol 27.2 2E+02 0.0069 28.6 8.9 84 618-725 34-117 (224)
117 1thf_D HISF protein; thermophI 26.9 2.6E+02 0.0088 27.6 9.8 68 620-700 37-104 (253)
118 2i5g_A Amidohydrolase; NYSGXRC 26.9 4.6E+02 0.016 27.5 12.1 133 618-761 104-250 (325)
119 1o4u_A Type II quinolic acid p 26.0 1.2E+02 0.0042 31.6 7.2 65 191-268 205-269 (285)
120 1f6y_A 5-methyltetrahydrofolat 25.9 5.3E+02 0.018 26.1 15.0 147 614-780 26-182 (262)
121 3gr7_A NADPH dehydrogenase; fl 25.8 3.7E+02 0.013 28.4 11.2 87 608-699 139-249 (340)
122 2v82_A 2-dehydro-3-deoxy-6-pho 25.7 1.5E+02 0.0051 28.7 7.5 64 189-267 22-87 (212)
123 2r14_A Morphinone reductase; H 25.7 2.6E+02 0.0089 30.1 10.0 86 610-699 163-275 (377)
124 1vyr_A Pentaerythritol tetrani 25.6 3E+02 0.01 29.4 10.5 90 610-700 158-272 (364)
125 3t7v_A Methylornithine synthas 25.5 4.4E+02 0.015 27.4 11.8 131 192-335 100-247 (350)
126 2ftp_A Hydroxymethylglutaryl-C 25.3 5.7E+02 0.019 26.3 15.9 149 616-780 33-199 (302)
127 1ete_A FLT3 ligand; four-helix 25.1 42 0.0015 30.1 2.8 13 325-337 1-13 (134)
128 1icp_A OPR1, 12-oxophytodienoa 25.1 2.8E+02 0.0097 29.7 10.2 89 610-699 164-276 (376)
129 3tqv_A Nicotinate-nucleotide p 25.0 1.2E+02 0.004 31.8 6.7 62 617-699 209-270 (287)
130 1j6o_A TATD-related deoxyribon 24.9 2.8E+02 0.0095 27.7 9.7 23 309-331 196-218 (268)
131 1ka9_F Imidazole glycerol phos 24.7 82 0.0028 31.4 5.5 71 191-269 36-106 (252)
132 3iix_A Biotin synthetase, puta 23.9 5.3E+02 0.018 26.5 12.0 82 681-765 141-240 (348)
133 2yw3_A 4-hydroxy-2-oxoglutarat 23.8 3.1E+02 0.011 26.7 9.5 82 618-725 30-111 (207)
134 1nvm_A HOA, 4-hydroxy-2-oxoval 23.3 6.6E+02 0.023 26.3 15.3 135 190-335 34-178 (345)
135 3paj_A Nicotinate-nucleotide p 22.5 1.3E+02 0.0043 32.0 6.5 61 618-699 243-303 (320)
136 3gnn_A Nicotinate-nucleotide p 22.3 1.4E+02 0.0048 31.3 6.8 62 191-268 221-282 (298)
137 1mxs_A KDPG aldolase; 2-keto-3 22.1 2.1E+02 0.007 28.6 7.8 84 618-725 43-126 (225)
138 2w6r_A Imidazole glycerol phos 22.1 88 0.003 31.5 5.2 71 190-268 34-104 (266)
139 3gnn_A Nicotinate-nucleotide p 22.0 1.5E+02 0.0052 31.1 6.9 61 618-699 221-281 (298)
140 2gou_A Oxidoreductase, FMN-bin 22.0 4E+02 0.014 28.4 10.7 88 609-700 157-271 (365)
141 2hsa_B 12-oxophytodienoate red 21.7 2.7E+02 0.0091 30.3 9.2 26 609-634 167-192 (402)
142 3noy_A 4-hydroxy-3-methylbut-2 21.7 6.3E+02 0.022 27.1 11.7 126 187-329 47-187 (366)
143 2qgq_A Protein TM_1862; alpha- 21.6 6.5E+02 0.022 25.6 13.5 163 614-789 37-231 (304)
144 3inp_A D-ribulose-phosphate 3- 21.6 1.8E+02 0.0061 29.6 7.2 73 188-271 42-120 (246)
145 1h5y_A HISF; histidine biosynt 21.1 1.8E+02 0.0062 28.4 7.2 70 617-699 37-106 (253)
146 1wbh_A KHG/KDPG aldolase; lyas 21.0 3.2E+02 0.011 26.9 8.9 84 618-725 33-116 (214)
147 2qiw_A PEP phosphonomutase; st 21.0 6.6E+02 0.022 25.4 13.2 142 617-787 97-252 (255)
148 1nvm_A HOA, 4-hydroxy-2-oxoval 20.9 7.4E+02 0.025 25.9 17.6 142 617-780 34-189 (345)
149 3ewb_X 2-isopropylmalate synth 20.5 7E+02 0.024 25.6 13.8 142 617-779 31-189 (293)
150 3noy_A 4-hydroxy-3-methylbut-2 20.1 3.9E+02 0.013 28.8 9.6 123 614-759 47-184 (366)
151 4ab4_A Xenobiotic reductase B; 20.0 8E+02 0.027 26.1 14.5 124 609-745 149-299 (362)
No 1
>3ppg_A 5-methyltetrahydropteroyltriglutamate--homocystei methyltransferase; cobalamin-independent, surface entropy reduction; 1.98A {Candida albicans} PDB: 3ppf_A 3pph_A 3ppc_A
Probab=100.00 E-value=1.8e-196 Score=1716.10 Aligned_cols=751 Identities=51% Similarity=0.837 Sum_probs=699.4
Q ss_pred CceecccCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHcCCcccCCCCcccchhhhhhHhhhCCCCC
Q 003819 1 MASHVVGYPRMGPKRELKFALESFWDGKSSADELQNVAADLRASIWNQMADAGIKFIPSNTFSYYDQVLDTTAMLGAVPP 80 (793)
Q Consensus 1 ~~t~~lG~PRig~~reLK~A~e~yw~g~is~~eL~~~~~~~~~~~~~~Q~~aGld~ItdGefs~yD~vLD~~~~~g~ip~ 80 (793)
|+||++||||||++||||+|+|+||+|+||+++|.++++++|+++|+.|+++|||+||+|||||||||||+++|||+||+
T Consensus 24 ~~~~~lg~prig~~relk~a~e~yw~g~~~~~eL~~~~~~lr~~~w~~q~~aGid~ip~~dFs~YD~vLd~~~~~g~ip~ 103 (789)
T 3ppg_A 24 VQSSVLGFPRIGGQRELKKITEAYWSGKATVEELLAKGKELREHNWKLQQKAGVDIIPSNDFSYYDQVLDLSLLFNAIPE 103 (789)
T ss_dssp CCEECSCCCCSCTTCHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHTCSBCEESCCCSSCHHHHHHHHTTCCCG
T ss_pred HHHhhcCCCCcCCccHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEecCCCcchHHHHHHHHHhCCCch
Confidence 35899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCccccchhhhhccCCC----------CCCccccceecccCceeecceecCCCccccC---CchhHHHHHHHHHc
Q 003819 81 RYSWNGGEIGFDVYFSMARGNA----------SVPAMEMTKWFDTNYHYIVPELGPDVNFSYA---SHKAVQEYKEAKAL 147 (793)
Q Consensus 81 R~~~~~~~~~l~~yFa~arG~~----------~~~a~~mtKwFdtNYhY~vPe~~~~~~~~l~---~~~~~~e~~~a~~~ 147 (793)
||.... ..++++||+||||.. +++|++|||||||||||+|||+.++++|+++ .++++++|++|+++
T Consensus 104 r~~~~~-~~~l~~yf~~arg~~~~~~~~~~~~~~~a~eMtKWFdTNYHYiVPE~~~~~~f~l~~~~~~k~~~e~~eAk~~ 182 (789)
T 3ppg_A 104 RYTKFD-LAPIDVLFAMGRGLQAAATATQAAVDVTALEMVKWFDSNYHYVRPTFSHSTEFKLNTAAGIKPVDEFNEAKAL 182 (789)
T ss_dssp GGGSSC-CCHHHHHHHHHHCEEECC-----CEEECCCCEEECTTSSCEEECCEECTTCCCCCCGGGCCHHHHHHHHHHHT
T ss_pred hhcccC-CCcHHHHHHHhcCCccccccccccCCcccccccccccCCCCeeceEECCCCCeeeccccchhHHHHHHHHHHc
Confidence 998542 346999999999965 5679999999999999999999999999999 89999999999999
Q ss_pred CCCCceEeehHHHHhhhccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEeeccccccCCChHHHHHHHHHHH
Q 003819 148 GMETVPVLVGPVSYLLLSKPAKGVEKSFSLLSLIDKIIPVYKEVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYS 227 (793)
Q Consensus 148 g~~~K~vl~GP~T~l~ls~~~~~~~~~~~~~~ll~~L~~~Y~~~l~~L~~aG~~~VQiDEP~L~~d~~~~~~~~~~~~y~ 227 (793)
|+.+||||+||+||++|||...+. .++++.+++++|+++|.++|++|.++||+|||||||+|++|+++++.+++.++|+
T Consensus 183 G~~~kpVl~GPvT~L~L~k~~~~~-~~~~~~~lL~~Ll~~Y~~~l~~L~~~G~~wVQiDEP~Lv~dl~~~~~~~~~~aY~ 261 (789)
T 3ppg_A 183 GVQTRPVILGPVSYLYLGKADKDS-LDLEPISLLPKILPVYKELLQKLKEAGAEQVQIDEPVLVLDLPEAVQSKFKEAYD 261 (789)
T ss_dssp TCCCEEEEECHHHHHHTCEECGGG-TTCCGGGGHHHHHHHHHHHHHHHHHHTCCEEEEECGGGGSCCCHHHHTHHHHHHH
T ss_pred CCCCCceeecHHHHHHHhcccccc-ccCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEeeCCeeecCCCHHHHHHHHHHHH
Confidence 999999999999999999832221 1478889999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEEeccCCCChhhHhhhCCCCCEEEEEEeeCCCCCCCCHHHHH
Q 003819 228 ELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLIRGTKTLDLIKTEFPLGKYLFAGVVDGRNIWANDLASSL 307 (793)
Q Consensus 228 ~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~lp~Vd~l~lD~~~~~~~l~~l~~~~p~~k~l~lGvVdgrn~w~ed~~~i~ 307 (793)
.|.+. +.++|+|+||||++ +++++.|.++| ||||||||++++++++.+.+.+|++|.|++|||||||+|++|+++++
T Consensus 262 ~L~~~-~~~kill~TYFg~~-~~~l~~l~~lp-V~gl~lDlv~~~~~l~~v~~~~~~~k~L~aGvVdGRNiWr~dl~~~l 338 (789)
T 3ppg_A 262 ALVGA-DVPELILTTYFGDV-RPNLKAIENLP-VAGFHFDFVRVPEQLDEVASILKDGQTLSAGVVDGRNIWKTDFAKAS 338 (789)
T ss_dssp HHCST-TSCEEEEECCSSCC-GGGHHHHTTCC-CSEEEEETTTCGGGHHHHHHTCCTTCEEEEEEECSSCCBCCCHHHHH
T ss_pred HHhhC-CCCCEEEECCCCCH-HHHHHHHHcCC-CcEEEEEccCCcchHHHHHhhcCCCCeEEEEEecCCccccCCHHHHH
Confidence 99763 35799999999999 89999999999 99999999998899999987899999999999999999999999999
Q ss_pred HHHHHHhhhcCCCcEEEeCCCCCcccccccccccCCcHHHHhHHHHHHHHHHHHHHHHHHccCCccHHHHHHHHHHHHhh
Q 003819 308 TTLQDLAGTVGKDKVVVSTSCSLLHTAVDLENETKLDQEIKSWLAFAAQKVVEVNALAKALSGQKDEAYFSSNAAAQASR 387 (793)
Q Consensus 308 ~~i~~~~~~v~~e~l~vspsCgL~hvP~~~~~E~~l~~~~~~~lafA~qKl~El~~l~~~l~~~~~~~~~~~~~~~~~~~ 387 (793)
++|+++.+.+|.++|||||||||+|||+|++.|++||+++|+|||||.|||.||+.|++++++++..+.+.+|.+++++|
T Consensus 339 ~~l~~l~~~lg~~~l~vspScSLlHvP~~l~~e~~l~~~~~~~lafa~~k~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~ 418 (789)
T 3ppg_A 339 AVVQKAIEKVGKDKVVVATSSSLLHTPVDLESETKLDAVIKDWFSFATQKLDEVVVIAKNVSGEDVSKQLEANAASIKAR 418 (789)
T ss_dssp HHHHHHHHHHCGGGEEEEESSCGGGSCSCGGGCSSSCHHHHTTBCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCeEEEeCCCCCCCCCcccccccCCCHHHHhhcchHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHh
Confidence 99999999899899999999999999999999999999999999999999999999999997655677899999999999
Q ss_pred hcCCCCCCHHHHhHHhhCcCCCCcCCCChHHHHHHHHhccCCCCccccccccCCCcHHHHHHHHHHHccchhhHHHHHHh
Q 003819 388 KSSPRVTNEAVQKPAAALKGSDHRRATNVSARLDAQQKKLNLPNLPTTTIGSFPQTMDLRRVRREFKAKKRVLLLFHILL 467 (793)
Q Consensus 388 ~~~~~~~~~~v~~~~~~~~~~~~~r~~~~~~r~~~q~~~~~~p~~~tt~iGSfPr~~~l~~~~~~~~~g~~~~~~~~~~~ 467 (793)
+.|++++|++||+|+++|+++|++|.+||++|+++||++|+||+||||||||||||.||+++|++|.+|+
T Consensus 419 ~~~~~~~~~~v~~r~~~~~~~~~~r~~~~~~r~~~q~~~~~lp~~ptt~VGSfPRp~~L~~aR~~~~~G~---------- 488 (789)
T 3ppg_A 419 SESSITNDPKVQERLTTINEALATRKAAFPERLTEQKAKYNLPLFPTTTIGSFPQTKDIRINRNKFAKGQ---------- 488 (789)
T ss_dssp HTCSSSCCHHHHHHHHTCCTGGGSCSSCHHHHHHHHHHHHCCCSSCBBCCSCCCCCHHHHHHHHHHHTTS----------
T ss_pred hcccccCCHHHHHHHHhCCHhhhccCCchHHHHHHHHHhcCCCCceeccccCcCCCHHHHHHHHHHhcCC----------
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccceeeeehhhhcccCCHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCccchhHHHHHhhccCceeeccceeeecC
Q 003819 468 LNFHHFQIVFHKLVFYFRISEDDYVKTIKEEINNVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYG 547 (793)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~i~~Q~~~Gldvi~~Ge~~r~d~v~~f~e~l~G~~~~~~g~v~~~~ 547 (793)
||.++|+++++++|+++|+.|+++||||||||||+|+||++||+++|+||.++.+||||+||
T Consensus 489 ------------------is~~el~~~~~~aI~~vV~~Qe~~GLdvvtDGE~~R~d~v~~F~e~L~G~~~~~~g~vq~~g 550 (789)
T 3ppg_A 489 ------------------ITAEEYEAFINKEIETVVRFQEEIGLDVLVHGEPERNDMVQYFGEQLNGFAFTTNGWVQSYG 550 (789)
T ss_dssp ------------------SCHHHHHHHHHHHHHHHHHHHHHHTCSBBCCCCTTCSCTTHHHHTTSEEEECCSSCCEEEET
T ss_pred ------------------CCHHHHHHHHHHHHHHHHHHHHHcCCCeeeCCCccchhHHHHHHHhCCCeeEecCcceEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCcEEEccCCCCCCcchhHHHHHHhcCCCCceeeechHHHHhhcccccCCCChHHHHHHHHHHHHHHHHHHHHcCC
Q 003819 548 SRCVKPPIIYGDVSRPKAMTVFWSSMAQSMTKRPMKGMLTGPVTILNWSFVRNDQPRFETCYQIALAIKDEVEDLEKAGI 627 (793)
Q Consensus 548 ~~~~~~P~i~g~v~~~~~~~~~~~~~aq~~t~kpvK~~LtGPvTll~~s~~~~~~~~~e~~~~lA~al~~ev~~L~~aGv 627 (793)
++|++||+|+|+|++++||+++|++|+|++|++|+|+|||||+|++.|+++++|.++++++.|||.+|++|+++|+++||
T Consensus 551 ~r~~~~p~i~G~V~~~~p~~v~~~~~~qs~t~~pvK~~L~gP~ti~~~s~~r~~~~~ee~~~dlA~A~r~Ei~~L~~AG~ 630 (789)
T 3ppg_A 551 SRYVRPPIIVGDVSRPKAMTVKESVYAQSITSKPMKGMLTGPVTILRWSFPRDDVSGKIQALQLGLALRDEVNDLEGAGI 630 (789)
T ss_dssp TEEECCCEEEEEEECCSCSSHHHHHHHHHTCSSCBEEEEECHHHHHHTSBCCSSSCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CccccCCeeeccCCCCCCCcHHHHHHHHhhccCCCceeccchHhHhhhhccccCCCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEcCcccccCCCCCc-ccHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCchhHHHHHHcCCCcEEEEe-cCCCCh
Q 003819 628 TVIQIDEAALREGLPLRK-SEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDADVITIE-NSRSDE 705 (793)
Q Consensus 628 ~~IQIDEPal~~~l~l~~-~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~C~g~~~~i~~~l~~l~~D~isiE-~~r~~~ 705 (793)
++||||||+++++++++. .++++|++|+++++|.++++++++++||+|||||||+. +.|.++++|+|+|| ++|+++
T Consensus 631 r~IQiDEPal~e~l~~r~g~d~~~~l~~av~a~n~a~~g~p~d~~I~tHiC~Gnf~~--~~I~~l~aD~islE~~~Rs~~ 708 (789)
T 3ppg_A 631 TVIQVDEPAIREGLPLRAGKERSDYLNWAAQSFRVATSGVENSTQIHSHFCYSDLDP--NHIKALDADVVSIEFSKKDDP 708 (789)
T ss_dssp CEEEEECTTTGGGSCSSSSHHHHHHHHHHHHHHHHHHSSSCTTSEEEEECC---CCH--HHHHHHCCSEEEEC-------
T ss_pred CEEEEcccchhhcccccccCCHHHHHHHHHHHHHHHHhcCCCCcEEEEeccCCCCCh--hHHHhCCCCEEEEecCCCcch
Confidence 999999999999998864 68999999999999999999998999999999999988 99999999999999 888888
Q ss_pred hhHHHhhhcccCCCeEeeeeecCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEcCCCCCCCCChhHHHHHHHHHHHHHHHH
Q 003819 706 KLLSVFREGVKYRAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLESNILWVNPDCGLKTRKYSEVKPALSNMVAAAKLL 785 (793)
Q Consensus 706 ~~L~~~~~~~~~~~~i~~GVvD~~s~~ves~eev~~~i~~al~~i~~~~l~vsPdCGL~t~~~~~~~~kL~~mv~aa~~~ 785 (793)
++|+.|.+ +++.|++||||+|+|.+|++|+|+++|+++++++|++++||||||||++++|+++++||++||+||+.+
T Consensus 709 e~L~~~~~---~~k~V~lGVvds~sp~vEs~EeV~~rI~~a~~~v~~erL~lsPdCGl~t~~~~~a~akL~~mveaAk~l 785 (789)
T 3ppg_A 709 NYIQEFSE---YPNHIGLGLFDIHSPRIPSKQEFVSRIEEILKVYPASKFWVNPDCGLKTRGWPEVKESLTNMVEAAKEF 785 (789)
T ss_dssp --CGGGGG---CCSEEEEC-------CCCCHHHHHHHHHHHTTTSCGGGEEECCSCC---CCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHh---cCCeEEeeeecCCCCCCCCHHHHHHHHHHHHHhcCcccEEEeCCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 88888876 568999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHH
Q 003819 786 RTQL 789 (793)
Q Consensus 786 r~~~ 789 (793)
|+++
T Consensus 786 R~~~ 789 (789)
T 3ppg_A 786 RAKY 789 (789)
T ss_dssp HHTC
T ss_pred HhhC
Confidence 9874
No 2
>1t7l_A 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; TIM barrel, methyltetrahydrofolate, zinc; 2.00A {Thermotoga maritima} PDB: 3bq5_A 3bq6_A 1xdj_A 1xr2_A* 1xpg_A*
Probab=100.00 E-value=4e-182 Score=1587.64 Aligned_cols=728 Identities=43% Similarity=0.752 Sum_probs=686.4
Q ss_pred ceecccCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHcCCcccCCCCcccchhhhhhHhhhCCCCCc
Q 003819 2 ASHVVGYPRMGPKRELKFALESFWDGKSSADELQNVAADLRASIWNQMADAGIKFIPSNTFSYYDQVLDTTAMLGAVPPR 81 (793)
Q Consensus 2 ~t~~lG~PRig~~reLK~A~e~yw~g~is~~eL~~~~~~~~~~~~~~Q~~aGld~ItdGefs~yD~vLD~~~~~g~ip~R 81 (793)
+||++||||||++||||+|+|+||+|++|+++|.++++++|.++|+.|++ |||+||+|||||||||||+++|||+||+|
T Consensus 34 ~~~~~g~prig~~relk~a~e~yw~g~~~~~~l~~~~~~lr~~~~~~q~~-g~~~i~~~dfs~yd~vld~~~~~g~~p~r 112 (766)
T 1t7l_A 34 KAYAFGFPKIGEKREFKKALEDFWKGKITEEQFEEEMNKLRMYMVENYRK-NVDVIPSNELSYYDFVLDTAVMVGAVPER 112 (766)
T ss_dssp EECCCCCCSSCTTCHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHH-HCSSCEESCCCSSCHHHHHHHHTTCCCGG
T ss_pred HhhccCCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHc-CCCeeccCCCcchhHHHhHHHHhCCCchh
Confidence 48899999999999999999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred ccCCCCccccchhhhhccCCCCCCccccceecccCceeecceecCCCccccCCchhHHHHHHHHHcCCCCceEeehHHHH
Q 003819 82 YSWNGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHYIVPELGPDVNFSYASHKAVQEYKEAKALGMETVPVLVGPVSY 161 (793)
Q Consensus 82 ~~~~~~~~~l~~yFa~arG~~~~~a~~mtKwFdtNYhY~vPe~~~~~~~~l~~~~~~~e~~~a~~~g~~~K~vl~GP~T~ 161 (793)
|... .++++||+||||. +|++|||||||||||+|||+. ++.|+++.++++++|++|+++|+++||||+||+||
T Consensus 113 ~~~~---~~l~~yf~~arg~---~a~em~kwf~tnyhy~vpe~~-~~~f~~~~~~~~~~~~ea~~~g~~~~pvl~gp~t~ 185 (766)
T 1t7l_A 113 FGEY---RGLSTYFDMARGG---KALEMTKFFNTNYHYLVPEIE-TEEFYLLENKPLEDYLFFKSKGIETAPWVIGPFTF 185 (766)
T ss_dssp GCSC---CSHHHHHHHHSST---TCCEEEECTTSSCEEEECBCC-CSCCCCSCCHHHHHHHHHHTTTCCCEEEEECHHHH
T ss_pred hccc---cchHHHHHHHcCC---cchhhhhhhcCCCCeEeeeec-CceeccCcchHHHHHHHHHhcCCCCeeEEEChHHH
Confidence 9743 2499999999994 799999999999999999999 89999999999999999999999999999999999
Q ss_pred hhhccCCCCcCCC--CCHHHHHHHHHHHHHHHHHHHHHCCCCEEEeeccccccCCChHHHHHHHHHHHHHHhccCCCcEE
Q 003819 162 LLLSKPAKGVEKS--FSLLSLIDKIIPVYKEVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVL 239 (793)
Q Consensus 162 l~ls~~~~~~~~~--~~~~~ll~~L~~~Y~~~l~~L~~aG~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~ 239 (793)
|+|||. +++..+ .+..+++++|+++|.++|++|.++||+|||||||+|++|++.+|.+++..+|+.|. .++|+
T Consensus 186 l~l~k~-~~~~~~~~~~~~~~l~~l~~~y~~~l~~l~~~g~~~vq~dep~l~~d~~~~~~~~~~~~y~~l~----~~~~~ 260 (766)
T 1t7l_A 186 LYLSKR-NGEWIRRPNQMEKLLESLVSVYKEVFEKLVENGCKEILVNEPAFVCDLEKAHWDLILNVYRELS----EFPLT 260 (766)
T ss_dssp HHTCEE-TTEECCSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEECGGGGSCCBHHHHHHHHHHHHTTT----TSCEE
T ss_pred HHHhcc-CCccccccchHHHHHHHHHHHHHHHHHHHHHCCCCEEEecCCeeecCCCHHHHHHHHHHHHHhc----CCcEE
Confidence 999994 331000 01238999999999999999999999999999999999999999999999999993 46999
Q ss_pred EEeccCCCchhhHHHHhcCCCccEEEEEeccCCCChhhHhh-hCCCCCEEEEEEeeCCCCCCCCHHHHHHHHHHHhhhcC
Q 003819 240 IETYFADVPAETYKILTSLKGVTGFGFDLIRGTKTLDLIKT-EFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVG 318 (793)
Q Consensus 240 l~tyfg~~~~~~~~~l~~lp~Vd~l~lD~~~~~~~l~~l~~-~~p~~k~l~lGvVdgrn~w~ed~~~i~~~i~~~~~~v~ 318 (793)
|+||||++ + +++.+.++| |+|||+|+++++++++.+.+ +||++|.|++|||||||||++|+++++++++++.+
T Consensus 261 ~~tyf~~~-~-~~~~~~~l~-v~~~~~d~v~~~~~~~~~~~~~~~~~~~l~~Gvvdgrniw~~d~~~~~~~~~~~~~--- 334 (766)
T 1t7l_A 261 VFTYYDSV-S-DYEACVSLP-VKRLHFDFVSNEENLKNLEKHGFPEDKKLVAGVINGRQPWKVDLRKVASLVEKLGA--- 334 (766)
T ss_dssp EECCSSCC-S-CHHHHHTSS-CSEEEEECSSCSHHHHHHHHHCCCTTSEEEEEEECSSCCBCCCHHHHHHHHHHHTC---
T ss_pred EECCcCCH-H-HHHHHHcCC-CcEEEEEecCCHHHHHHHHhccCCCCceEEEEEecCcchhhcCHHHHHHHHHHhhe---
Confidence 99999999 7 999999999 99999999999888999987 69999999999999999999999999999998753
Q ss_pred CCcEEEeCCCCCcccccccccccCCcHHHHhHHHHHHHHHHHHHHHHHHccCCccHHHHHHHHHHHHhhhcCCCCCCHHH
Q 003819 319 KDKVVVSTSCSLLHTAVDLENETKLDQEIKSWLAFAAQKVVEVNALAKALSGQKDEAYFSSNAAAQASRKSSPRVTNEAV 398 (793)
Q Consensus 319 ~e~l~vspsCgL~hvP~~~~~E~~l~~~~~~~lafA~qKl~El~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 398 (793)
|||+|||||+|||+|++.|++||+++|+|||||.|||+||+.|++++++.. +.+ |.+++++|+ +|++|
T Consensus 335 ---~~~~~s~sllh~p~~~~~e~~l~~~~~~~lafa~~k~~e~~~l~~~~~~~~--~~~--~~~~~~~~~-----~~~~v 402 (766)
T 1t7l_A 335 ---SAISNSCPLFHLPVTLELENNLPGGLKEKLAFAKEKLEELKMLKDFLEGKT--FDL--PNVSFEDFA-----VDLQA 402 (766)
T ss_dssp ---SEEEESSCGGGSCSCSTTCCSSSTTTGGGBCCHHHHHHHHHHHHHHHTTSC--CCC--CCCCCTTTT-----CCHHH
T ss_pred ---EEEECCcCCeeccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHhCCc--HHH--HHHHHHHhh-----cCHHH
Confidence 999999999999999999999999999999999999999999999997542 222 555555555 89999
Q ss_pred HhHHhhCcCCCCcCCCChHHHHHHHHhccCCCCccccccccCCCcHHHHHHHHHHHccchhhHHHHHHhhccccceeeee
Q 003819 399 QKPAAALKGSDHRRATNVSARLDAQQKKLNLPNLPTTTIGSFPQTMDLRRVRREFKAKKRVLLLFHILLLNFHHFQIVFH 478 (793)
Q Consensus 399 ~~~~~~~~~~~~~r~~~~~~r~~~q~~~~~~p~~~tt~iGSfPr~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 478 (793)
|+|+++|+++|++|.+||++|+++|+++|+||+||||||||||||.|||++|++||+|+
T Consensus 403 ~~r~~~~~~~~~~r~~~~~~r~~~q~~~~~lp~~pTt~IGSfPrp~ELK~Are~y~~G~--------------------- 461 (766)
T 1t7l_A 403 VERVRNLPEDSFRREKEYTERDRIQRERLNLPLFPTTTIGSFPQTPEVRKMRSKYRKGE--------------------- 461 (766)
T ss_dssp HHHHHTCCGGGTSCSSCHHHHHHHHHHHHCCCSSCBCCCSCCCCCHHHHHHHHHHHTTS---------------------
T ss_pred HHHHHhCCHhhcccCCchHHHHHHHHHhcCCCCcceeeeCcCCCCHHHHHHHHHHHCCC---------------------
Confidence 99999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccCCHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCccchhHHHHHhhccCceeeccceeeecCCccccCcEEEc
Q 003819 479 KLVFYFRISEDDYVKTIKEEINNVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPPIIYG 558 (793)
Q Consensus 479 ~~~~~~~i~~~~~~~~~~~~i~~~i~~Q~~~Gldvi~~Ge~~r~d~v~~f~e~l~G~~~~~~g~v~~~~~~~~~~P~i~g 558 (793)
||.++|+++++++|+++|+.|+++|||+||||||+|+|||.||++.|+||.++.+||+++||++||+||++.|
T Consensus 462 -------Is~eeL~~~~~~~i~~~V~~QeeaGLDvItdGEFsR~D~Vldf~~~L~Gi~~~~~g~~~~~~~~~~~~pi~~G 534 (766)
T 1t7l_A 462 -------ISKEEYEAFIKEQIKKAIELQEEIGLDVLVHGEFERTDMVEFFAEKLNGIATTQNGWVLSYGSRCYRPPIIYG 534 (766)
T ss_dssp -------SCHHHHHHHHHHHHHHHHHHHHHHTCSSBCCCCTTCSSHHHHHHTTSEEEECCSSCCEEEETTEEECCCEEEE
T ss_pred -------CCHHHHHHHHHHHHHHHHHHHHHcCCCccCCCCcchhhHHHHHHHHhCCccccccccccccccccccCceeec
Confidence 9999999999999999999999999999999999999999999999999998888999999999999999999
Q ss_pred cCCCCCCcchhHHHHHHhcCCCCceeeechHHHHhhcccccCCCChHHHHHHHHHHHHHHHHHHHHcCCcEEEEcCcccc
Q 003819 559 DVSRPKAMTVFWSSMAQSMTKRPMKGMLTGPVTILNWSFVRNDQPRFETCYQIALAIKDEVEDLEKAGITVIQIDEAALR 638 (793)
Q Consensus 559 ~v~~~~~~~~~~~~~aq~~t~kpvK~~LtGPvTll~~s~~~~~~~~~e~~~~lA~al~~ev~~L~~aGv~~IQIDEPal~ 638 (793)
+++++.||+++|+++|++++.+|+|++||||+|++.|++.+++.++++++.+|+.+|++++++|+++||++||||||+|+
T Consensus 535 ~i~ra~pMtlde~~~Aksl~~~pvK~~LtGPvTlL~ls~~r~d~~r~ell~dLA~ayreeI~~L~~AGa~~IQIDEPaL~ 614 (766)
T 1t7l_A 535 TVTRPEPMTLKEITYAQSLTEKPVKGMLTGPVTIMSWSYYREDIPEREIAYQIALAINEEVKDLEEAGIKIVQIDEPAFR 614 (766)
T ss_dssp EEECCSCSSHHHHHHHHHTCSSCBEEEEECHHHHHHTSEECSSSCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECTHHH
T ss_pred CCccCCcChHHHHHHHHHhcCCCeEEEEeCHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEcCCccc
Confidence 99989999999999999999999999999999999999988888999999999999999999999999999999999999
Q ss_pred cCCCCCcccHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCchhHHHHHHcCCCcEEEEecCCCChhhHHHhhhcc-cC
Q 003819 639 EGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDADVITIENSRSDEKLLSVFREGV-KY 717 (793)
Q Consensus 639 ~~l~l~~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~C~g~~~~i~~~l~~l~~D~isiE~~r~~~~~L~~~~~~~-~~ 717 (793)
++++.++.++.++++|+++++|.+ ++++.+++|++|||||+++++++.|.++++|+|++|++|+++++++.+.+ + .+
T Consensus 615 ~~L~~~~~d~~~~l~~a~~aln~a-~gv~~~~~I~lH~C~G~~~di~~~L~~l~VD~IsLE~~Rs~~elL~~l~~-~p~~ 692 (766)
T 1t7l_A 615 EKAPIKKSKWPEYFEWAINAFNLA-ANARPETQIHAHMCYSDFNEIIEYIHQLEFDVISIEASRSKGEIISAFEN-FKGW 692 (766)
T ss_dssp HTSCSSGGGHHHHHHHHHHHHHHH-TCCCTTSEEEEECCCSCCTTTHHHHTTSCCSEEEEECTTTTTGGGHHHHT-STTC
T ss_pred ccCCCcchhHHHHHHHHHHHHHHh-hcCCCCceEEEEEecCchHHHHHHHHcCCCCEEEEecCCCchhHHHHHHh-cccc
Confidence 999888778999999999999999 99987899999999999999999999999999999999988888888876 4 35
Q ss_pred CCeEeeeeecCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEcCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHh
Q 003819 718 RAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLESNILWVNPDCGLKTRKYSEVKPALSNMVAAAKLLRTQLA 790 (793)
Q Consensus 718 ~~~i~~GVvD~~s~~ves~eev~~~i~~al~~i~~~~l~vsPdCGL~t~~~~~~~~kL~~mv~aa~~~r~~~~ 790 (793)
++.|++||||+||+|+|++|+++++|+++++++|.+++||||||||+|+++++++++|++|+++|+++|++++
T Consensus 693 ~k~L~lGVVD~rn~~ved~EeI~~rI~~a~~~Vg~erL~VsPdCGL~~~p~~e~~~kLk~mvaaAkevr~e~~ 765 (766)
T 1t7l_A 693 IKQIGVGVWDIHSPAVPSINEMREIVERVLRVLPKELIWINPDCGLKTRNWDEVIPSLRNMVALAKEMREKFE 765 (766)
T ss_dssp CSEEEEECSCTTSCSCCCHHHHHHHHHHHTTTSCGGGEEEECSSCCTTSCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCeEEEEEECCCCCCCCCHHHHHHHHHHHHHhcCcccEEEeCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999864
No 3
>1u1j_A 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; methionine, synthase, methyltetrahydrofolate; HET: C2F; 2.40A {Arabidopsis thaliana} SCOP: c.1.22.2 c.1.22.2 PDB: 1u1h_A* 1u1u_A 1u22_A*
Probab=100.00 E-value=2.1e-177 Score=1579.16 Aligned_cols=764 Identities=87% Similarity=1.320 Sum_probs=704.0
Q ss_pred CceecccCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHcCCcccCCCCcccchhhhhhHhhhCCCCC
Q 003819 1 MASHVVGYPRMGPKRELKFALESFWDGKSSADELQNVAADLRASIWNQMADAGIKFIPSNTFSYYDQVLDTTAMLGAVPP 80 (793)
Q Consensus 1 ~~t~~lG~PRig~~reLK~A~e~yw~g~is~~eL~~~~~~~~~~~~~~Q~~aGld~ItdGefs~yD~vLD~~~~~g~ip~ 80 (793)
|.||++||||||++||||+|+|+||+|+||+++|+++++++|+++|+.|+++|||+||||||||||||||++++||+||+
T Consensus 1 ~~~~~~g~PR~g~~reLk~a~e~~~~g~i~~~~L~~~~~~~~~~~~~~Q~~aGld~i~~gdfs~yd~vld~~~~l~~ip~ 80 (765)
T 1u1j_A 1 MASHIVGYPRMGPKRELKFALESFWDGKSTAEDLQKVSADLRSSIWKQMSAAGTKFIPSNTFAHYDQVLDTTAMLGAVPP 80 (765)
T ss_dssp -CBBCSCCCCSCTTCHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHTTCSBCEESCCCSSCHHHHHHHHTTCCCG
T ss_pred CCcceecCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEeccCCcccchHHHHHHHHhCCcCc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCccccchhhhhccCCCCCCccccceecccCceeecceecCCCccccCCchhHHHHHHHHHcCCCCceEeehHHH
Q 003819 81 RYSWNGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHYIVPELGPDVNFSYASHKAVQEYKEAKALGMETVPVLVGPVS 160 (793)
Q Consensus 81 R~~~~~~~~~l~~yFa~arG~~~~~a~~mtKwFdtNYhY~vPe~~~~~~~~l~~~~~~~e~~~a~~~g~~~K~vl~GP~T 160 (793)
||....+..++++||+|+||..+++|++|||||||||||+|||++++++|++++++++++|++|+++|+++||+|+||+|
T Consensus 81 r~~~~~~~~~~~~yf~~arG~~~~~a~emtkwfdtNyhy~vPe~~~~~~~~~~~~~~l~~~~~ak~~g~~~K~~l~GP~T 160 (765)
T 1u1j_A 81 RYGYTGGEIGLDVYFSMARGNASVPAMEMTKWFDTNYHYIVPELGPEVNFSYASHKAVNEYKEAKALGVDTVPVLVGPVS 160 (765)
T ss_dssp GGCCCSSSCCHHHHHHHHHCCSSSCCCCEEECTTSSCEEECCEECTTCCCCCCCCHHHHHHHHHHHTTCCCEEEEECHHH
T ss_pred ceeccccCccHHHHHHHhCCCccccchhhheecccCcCceeeEEcCCcccccCCcchHHHHHHHHhcCCCceEEECCHHH
Confidence 99743222358999999999635779999999999999999999999999998899999999999999999999999999
Q ss_pred HhhhccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEeeccccccCCChHHHHHHHHHHHHHHhccCCCcEEE
Q 003819 161 YLLLSKPAKGVEKSFSLLSLIDKIIPVYKEVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLI 240 (793)
Q Consensus 161 ~l~ls~~~~~~~~~~~~~~ll~~L~~~Y~~~l~~L~~aG~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l 240 (793)
|+++++...+.+..+++.+++++|+++|++++++|+++||+|||||||+|+.+++.++.+++..+|+.+.+..++.+++|
T Consensus 161 ll~l~k~~~~~~~~~~~~~ll~~L~~~y~~~l~~L~~aG~~~VQiDEP~L~~~l~~~~~~~~~~a~~~l~~~~~~~~i~l 240 (765)
T 1u1j_A 161 YLLLSKAAKGVDKSFELLSLLPKILPIYKEVITELKAAGATWIQLDEPVLVMDLEGQKLQAFTGAYAELESTLSGLNVLV 240 (765)
T ss_dssp HHHTCEECTTCCTTCCGGGGHHHHHHHHHHHHHHHHHTTCCEEEEECGGGGSCCCHHHHHHHHHHHHHSTTTTCSSEEEE
T ss_pred HHHhhhcccccCccCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEcCCccccCCCHHHHHHHHHHHHHHHhhcCCCeEEE
Confidence 99998743332101478899999999999999999999999999999999999988889999999999975322478999
Q ss_pred EeccCCCch-hhHHHHhcCCCccEEEEEeccCCCChhhHhhhCCCCCEEEEEEeeCCCCCCCCHHHHHHHHHHHhhhcCC
Q 003819 241 ETYFADVPA-ETYKILTSLKGVTGFGFDLIRGTKTLDLIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGK 319 (793)
Q Consensus 241 ~tyfg~~~~-~~~~~l~~lp~Vd~l~lD~~~~~~~l~~l~~~~p~~k~l~lGvVdgrn~w~ed~~~i~~~i~~~~~~v~~ 319 (793)
|||||++ + ++++.|.++|+||+||||+++++++++.+.+.+|++|.|++|||||||+|++|+++++++|+++.+++|.
T Consensus 241 htc~G~~-~~~~~~~l~~l~~vd~l~lD~v~~~~~l~~l~~~l~~~k~L~lGvVdgrni~~~d~e~v~~~l~~~~~~lg~ 319 (765)
T 1u1j_A 241 ETYFADI-PAEAYKTLTSLKGVTAFGFDLVRGTKTLDLVKAGFPEGKYLFAGVVDGRNIWANDFAASLSTLQALEGIVGK 319 (765)
T ss_dssp ECCSSCC-CHHHHHHHTTCTTCCEEEEESSSCTTHHHHHHHCCCSSCEEEEEEECSSSCBCCCHHHHHHHHHHHHHHCCS
T ss_pred EeCCCCc-chHHHHHHHcCCCCcEEEEEecCCcccHHHHHHhcCCCCEEEEEeeCCcccCCCCHHHHHHHHHHHHHhcCC
Confidence 9999999 8 8999999998899999999997788998886688899999999999999999999999999999999998
Q ss_pred CcEEEeCCCCCcccccccccccCCcHHHHhHHHHHHHHHHHHHHHHHHccCCccHHHHHHHHHHHHhhhcCCCCCCHHHH
Q 003819 320 DKVVVSTSCSLLHTAVDLENETKLDQEIKSWLAFAAQKVVEVNALAKALSGQKDEAYFSSNAAAQASRKSSPRVTNEAVQ 399 (793)
Q Consensus 320 e~l~vspsCgL~hvP~~~~~E~~l~~~~~~~lafA~qKl~El~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 399 (793)
+||||||||||+|||+|+..|++|++++++|||||.|||+||+.|++++.+....+.+.+|.+++++|+.|++++|++||
T Consensus 320 ~~l~lspsCgL~hvP~~~~~e~~l~~~~~~~~~fa~~Kl~el~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 399 (765)
T 1u1j_A 320 DKLVVSTSCSLLHTAVDLINETKLDDEIKSWMAFAAQKVVEVNALAKALAGQKDEALFSANAAALASRRSSPRVTNEGVQ 399 (765)
T ss_dssp SCEEEEESSCGGGSCSCGGGCCSSCHHHHTTBCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHCTTTSCTHHH
T ss_pred CcEEEcCCCCccCCccccccccCCCHHHHhhhHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcCcccCCHHHH
Confidence 99999999999999999999999999999999999999999999999998643356789999999999999999999999
Q ss_pred hHHhhCcCCCCcCCCChHHHHHHHHhccCCCCccccccccCCCcHHHHHHHHHHHccchhhHHHHHHhhccccceeeeeh
Q 003819 400 KPAAALKGSDHRRATNVSARLDAQQKKLNLPNLPTTTIGSFPQTMDLRRVRREFKAKKRVLLLFHILLLNFHHFQIVFHK 479 (793)
Q Consensus 400 ~~~~~~~~~~~~r~~~~~~r~~~q~~~~~~p~~~tt~iGSfPr~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 479 (793)
+|+++|+++|++|.+||++|+++|+++|+||+||||||||||||.+|+++|++|.+|+
T Consensus 400 ~~~~~~~~~~~~r~~~~~~r~~~q~~~~~l~~~~tt~vGSfprp~~l~~ar~~~~~g~---------------------- 457 (765)
T 1u1j_A 400 KAAAALKGSDHRRATNVSARLDAQQKKLNLPILPTTTIGSFPQTVELRRVRREYKAKK---------------------- 457 (765)
T ss_dssp HTTTTTSSCCCCCSSCGGGTHHHHHHHSCCCSSCBBCCSBCCCCSCCC--------------------------------
T ss_pred HHHHhCChhhcccCCchHHHHHHHHHhcCCCCCccCccCCCCCCHHHHHHHHHhhcCC----------------------
Confidence 9999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccCCHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCccchhHHHHHhhccCceeeccceeeecCCccccCcEEEcc
Q 003819 480 LVFYFRISEDDYVKTIKEEINNVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPPIIYGD 559 (793)
Q Consensus 480 ~~~~~~i~~~~~~~~~~~~i~~~i~~Q~~~Gldvi~~Ge~~r~d~v~~f~e~l~G~~~~~~g~v~~~~~~~~~~P~i~g~ 559 (793)
|+.++|+++++++|+++|+.|+++||||||||||+|+|||+||+++|+||.++.+||+|+||++|+++|+|+|+
T Consensus 458 ------i~~~~~~~~~~~~i~~~V~~Q~~~GldvvtdGE~~R~~~~~~f~~~l~G~~~~~~g~~~~~~~~~~~~p~i~g~ 531 (765)
T 1u1j_A 458 ------VSEEDYVKAIKEEIKKVVDLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTANGWVQSYGSRCVKPPVIYGD 531 (765)
T ss_dssp ---------CCHHHHHHHHHHHHHHHHHSSCCSBBCCBCTTCSCTTHHHHTTSTTEECCSSCCEEEETTEEECCCEECSC
T ss_pred ------CCHHHHHHHHHHHHHHHHHHHHHhCCCeeecchhccccHHHHHHHHhCCCccccCCcccccccccCcCCeeecC
Confidence 99999999999999999999999999999999999999999999999999999899999999999999999999
Q ss_pred CCCCCCcchhHHHHHHhcCCCCceeeechHHHHhhcccccCCCChHHHHHHHHHHHHHHHHHHHHcCCcEEEEcCccccc
Q 003819 560 VSRPKAMTVFWSSMAQSMTKRPMKGMLTGPVTILNWSFVRNDQPRFETCYQIALAIKDEVEDLEKAGITVIQIDEAALRE 639 (793)
Q Consensus 560 v~~~~~~~~~~~~~aq~~t~kpvK~~LtGPvTll~~s~~~~~~~~~e~~~~lA~al~~ev~~L~~aGv~~IQIDEPal~~ 639 (793)
|+++.||+++|++|+|+++++|||+|||||+|++.|++.+++.++++++.++|.++++|+++|+++||++||||||++++
T Consensus 532 i~~~~p~~ve~~~~l~~~~~~pvK~~l~GP~Tl~~~~~~r~~~~~~~l~~~lA~a~~~ev~~L~~aG~~~IQiDEP~l~~ 611 (765)
T 1u1j_A 532 VSRPKAMTVFWSAMAQSMTSRPMKGMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKGGIGVIQIDEAALRE 611 (765)
T ss_dssp CCCCSCSSTHHHHHHTTSCSSCBEEEEECHHHHHHTSEECTTSCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECTTSST
T ss_pred cCCCCCCHHHHHHHHHHHhcCCeEEEecCHHHHHHHHhccCcCcHHHHHHHHHHHHHHHHHHHHHcCCCEEEECCCcccc
Confidence 99999999999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred CCCCCcccHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCchhHHHHHHcCCCcEEEEecCCCChhhHHHhhhcccCCC
Q 003819 640 GLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDADVITIENSRSDEKLLSVFREGVKYRA 719 (793)
Q Consensus 640 ~l~l~~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~C~g~~~~i~~~l~~l~~D~isiE~~r~~~~~L~~~~~~~~~~~ 719 (793)
++++++.+++.|++|+++++|.++++++++++||+|||||+|+++++.|.++++|+|+||++|++++.|+.|.+.+.+++
T Consensus 612 ~l~~~~~~~~~~~~~av~~~~~~~~~v~~~~~i~~HiC~G~~~~i~~~l~~~~~D~islE~~rs~~e~L~~~~~~~~~~~ 691 (765)
T 1u1j_A 612 GLPLRKSEHAFYLDWAVHSFRITNCGVQDSTQIHTHMCYSHFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGA 691 (765)
T ss_dssp TCCSSGGGHHHHHHHHHHHHHHHHTTSCSSSEEEEECSCSCCTTTHHHHHTTCCSEEECCBSSSCTTGGGGGTTTTCCCS
T ss_pred cccccCCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEeccCCcHHHHHHHHhCCCCEEEEeCCCCCHHHHHHHHhhccCCC
Confidence 99988889999999999999999999988899999999999999999999999999999998888888887753013567
Q ss_pred eEeeeeecCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEcCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHhhcC
Q 003819 720 GIGPGVYDIHSPRIPSTEEIADRINKMLAVLESNILWVNPDCGLKTRKYSEVKPALSNMVAAAKLLRTQLASAK 793 (793)
Q Consensus 720 ~i~~GVvD~~s~~ves~eev~~~i~~al~~i~~~~l~vsPdCGL~t~~~~~~~~kL~~mv~aa~~~r~~~~~~~ 793 (793)
.|++||||+|++.+|++|+|+++|+++++++|++++||||||||++++|+++++||++||+||+.+|+++.++|
T Consensus 692 ~v~lGvvd~~s~~ve~~eev~~ri~~a~~~v~~e~l~lsPdCGl~t~t~~e~~~kL~~mveaA~~vr~~~~~~~ 765 (765)
T 1u1j_A 692 GIGPGVYDIHSPRIPSSEEIADRVNKMLAVLEQNILWVNPDCGLKTRKYTEVKPALKNMVDAAKLIRSQLASAK 765 (765)
T ss_dssp EECCBSSCTTSSSCCTHHHHHHHHHHHHHSSCSTTBCBBCSSCSSSSCHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred eEEEeecCCccCCCCCHHHHHHHHHHHHHhcCcccEEEeCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987765
No 4
>2nq5_A 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; structural genomics, target 6426D, PSI; 1.90A {Streptococcus mutans} PDB: 3l7s_A 3l7r_A 3t0c_A
Probab=100.00 E-value=1.7e-175 Score=1557.49 Aligned_cols=741 Identities=45% Similarity=0.767 Sum_probs=668.4
Q ss_pred CceecccCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHcCCcccCCCCcccchhhhhhHhhhCCCCC
Q 003819 1 MASHVVGYPRMGPKRELKFALESFWDGKSSADELQNVAADLRASIWNQMADAGIKFIPSNTFSYYDQVLDTTAMLGAVPP 80 (793)
Q Consensus 1 ~~t~~lG~PRig~~reLK~A~e~yw~g~is~~eL~~~~~~~~~~~~~~Q~~aGld~ItdGefs~yD~vLD~~~~~g~ip~ 80 (793)
+++|++||||||++||||+|+|+||+|+||+++|+++++++|+++|+.|+++|||+||+|||||||||||+++|||+||+
T Consensus 4 ~~~~~lgyPRig~~relk~a~e~yw~g~i~~~~L~~~~~~~r~~~~~~q~~aGid~i~~gdfs~yD~vl~~~~~~~~~p~ 83 (755)
T 2nq5_A 4 TKVSSLGYPRLGENREWKKLIEAYWAGKVSKNDLFAGAKELRLDFLKKQLNAGLDLIPVGDFSLYDHILDLSVQFNIIPK 83 (755)
T ss_dssp CEEBCSCCCSSCTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHTTCSBEEESCCCSSCHHHHHHHHTTCCCG
T ss_pred cccceecCCCCCCCHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCcccCCccchHHHHHHHHHhCCCch
Confidence 35899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCccccchhhhhccCC-CCCCccccceecccCceeecceecCCCccccCCchhHHHHHHHH-HcCCCCceEeehH
Q 003819 81 RYSWNGGEIGFDVYFSMARGN-ASVPAMEMTKWFDTNYHYIVPELGPDVNFSYASHKAVQEYKEAK-ALGMETVPVLVGP 158 (793)
Q Consensus 81 R~~~~~~~~~l~~yFa~arG~-~~~~a~~mtKwFdtNYhY~vPe~~~~~~~~l~~~~~~~e~~~a~-~~g~~~K~vl~GP 158 (793)
||... ..++++||+||||. .++ +++|||||||||||+|||+++ ++|+++.++++++|++|+ ++|+++||+|+||
T Consensus 84 r~~~~--~~~l~~yFa~aRG~~~~~-a~emtkwfdtNyhY~vPe~~~-~~~~~~~~~~l~~~~eA~~~~g~~vK~vl~GP 159 (755)
T 2nq5_A 84 RFAKE--PIDIDLYFAIARGNKENV-ASSMKKWFNTNYHYIVPEWSK-QRPKLNNNRLLDLYLEAREVVGDKAKPVITGP 159 (755)
T ss_dssp GGTTS--CSSHHHHHHHHHCCSSSC-CCCEEECTTSSCEEECCBCCS-CCCCCCCCHHHHHHHHHHHHHGGGEEEEEECH
T ss_pred hhccc--cccHHHHHHHHhCCCCCC-cccceeeccCCCceeeeeeeC-ceeeecCchHHHHHHHHHHhcCCCcEEEEccH
Confidence 99743 24699999999996 355 899999999999999999999 899999999999999999 7799999999999
Q ss_pred HHHhhhccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEeeccccccCCChHHHHHHHHHHHHHHhccCCCcE
Q 003819 159 VSYLLLSKPAKGVEKSFSLLSLIDKIIPVYKEVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNV 238 (793)
Q Consensus 159 ~T~l~ls~~~~~~~~~~~~~~ll~~L~~~Y~~~l~~L~~aG~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i 238 (793)
+||++|++. . . +..+++++|+++|.+++++|.++||+|||||||+|++++++++.+++..+|+.+.+...+.++
T Consensus 160 ~Tla~l~k~-~----~-~~~dll~~L~~~y~~~l~~L~~~Ga~~VQiDEP~L~~dl~~~~~~~~~~ay~~l~~~~~~~~v 233 (755)
T 2nq5_A 160 ITYVALSTG-V----E-DFTAAVKSLLPLYKQVFTELVKAGASYIQVDEPIFVTDEGKDYLQAAKAVYAYFAKEVPDAKF 233 (755)
T ss_dssp HHHHHTCBS-C----S-CHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECGGGGSSGGGGGHHHHHHHHHHHHHHSTTCEE
T ss_pred HHHHHHhcC-C----c-HHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeCCcccCCCCHHHHHHHHHHHHHHHhcccCCcE
Confidence 999999883 1 1 355999999999999999999999999999999999999888899999999999742113589
Q ss_pred EEEeccCCCchhhHHHHhcCCCccEEEEEeccCC-CChhhHhhhCCCCCEEEEEEeeCCCCCCCCHHHHHHHHHHHhhhc
Q 003819 239 LIETYFADVPAETYKILTSLKGVTGFGFDLIRGT-KTLDLIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTV 317 (793)
Q Consensus 239 ~l~tyfg~~~~~~~~~l~~lp~Vd~l~lD~~~~~-~~l~~l~~~~p~~k~l~lGvVdgrn~w~ed~~~i~~~i~~~~~~v 317 (793)
+||||||++ . +++.|.++| ||+||+|+++++ ++++.+.+.+|++|.|++|||||||+|++|+++++++++++.+.
T Consensus 234 ~lhtyfG~~-~-~~~~l~~l~-vd~l~lD~v~~~~~~l~~l~~~~~~~k~L~~GvVdgrniw~~d~e~v~~~l~~~~~~- 309 (755)
T 2nq5_A 234 IFQTYFEGL-I-DSQVLSQLP-VDAFGLDFVYGLEENLEAIKTGAFKGKEIFAGVIDGRNIWSSDFVKTSALLETIEEQ- 309 (755)
T ss_dssp EEECCSSCC-T-THHHHTTSS-CSEEEEESSSSHHHHHHHHHTTTTTTSEEEEEEECTTSCBCCCHHHHHHHHHHHHHT-
T ss_pred EEEEeCCCh-H-HHHHHHhCC-CCEEEEEecCCChhhHHHHHHhcCCCCEEEEEeeCCcccCCCCHHHHHHHHHHHHhh-
Confidence 999999999 6 899999999 999999999987 78888887688899999999999999999999999999999876
Q ss_pred CCCcEEEeCCCCCcccccccccccCCcHHHHhHHHHHHHHHHHHHHHHHHccCCccHHHHHHHHHHHHhhhcCCCCCCHH
Q 003819 318 GKDKVVVSTSCSLLHTAVDLENETKLDQEIKSWLAFAAQKVVEVNALAKALSGQKDEAYFSSNAAAQASRKSSPRVTNEA 397 (793)
Q Consensus 318 ~~e~l~vspsCgL~hvP~~~~~E~~l~~~~~~~lafA~qKl~El~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (793)
.+++||+|||||+|+|++++.|++||+++|+|||||.|||+||+.|+++|++.. .+.+.+|.+++++|+.|++ +|+
T Consensus 310 -~~~l~vsPsCsL~h~P~~l~~e~~~~~~~~~~~~fa~~k~~e~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~- 385 (755)
T 2nq5_A 310 -SAALTIQPSCSLLHVPVTTKNETDLDPVLRNGLAFADEKLTEVKRLAEHLDGRE-DPAYDLHIAHFDALQAADF-RNV- 385 (755)
T ss_dssp -SSEEEEEESSCGGGSCSCSTTCTTSCHHHHTTBCCHHHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHTCGG-GSC-
T ss_pred -cCCEEEcCCCCcCCCCHHHhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhccc-hHHHHHHHHHHHHhccCcc-cCH-
Confidence 589999999999999999999999999999999999999999999999998643 4568999999999999999 887
Q ss_pred HHhHHhhCcCCCCcCCCChHHHHHHHHhccCCCCccccccccCCCcHHHHHHHHHHHccchhhHHHHHHhhccccceeee
Q 003819 398 VQKPAAALKGSDHRRATNVSARLDAQQKKLNLPNLPTTTIGSFPQTMDLRRVRREFKAKKRVLLLFHILLLNFHHFQIVF 477 (793)
Q Consensus 398 v~~~~~~~~~~~~~r~~~~~~r~~~q~~~~~~p~~~tt~iGSfPr~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 477 (793)
|+++|+++|++|.+||++|+++|+++|+||+||||||||||||.+|+++|++|.+|+
T Consensus 386 ---~~~~~~~~~~~r~~~~~~r~~~q~~~~~l~~~~tt~VGSfprp~~l~~ar~~~~~g~-------------------- 442 (755)
T 2nq5_A 386 ---KLEDLSRVATKRPSDFAKRRDIQQEKLHLPLLPTTTIGSFPQSREIRRTRLAWKRGD-------------------- 442 (755)
T ss_dssp ---CCCCGGGSCSSCSSCHHHHHHHHHHHHCCCSSCBBCCSBCCC-----------------------------------
T ss_pred ---HHHhCChhhcccCCchHHHHHHHHHhcCCCCcceeeeCCCCCCHHHHHHHHHhhcCC--------------------
Confidence 999999999999999999999999999999999999999999999999999999999
Q ss_pred ehhhhcccCCHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCccchhHHHHHhhccCceeeccceeeecCCccccCcEEE
Q 003819 478 HKLVFYFRISEDDYVKTIKEEINNVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPPIIY 557 (793)
Q Consensus 478 ~~~~~~~~i~~~~~~~~~~~~i~~~i~~Q~~~Gldvi~~Ge~~r~d~v~~f~e~l~G~~~~~~g~v~~~~~~~~~~P~i~ 557 (793)
|+.++|+++++++|+++|+.|+++||||||||||+|+|||+||+++|+||.++.+||+|+||++|+++|+|+
T Consensus 443 --------i~~~~l~~~~~~~i~~~V~~Q~~~GldvvtdGE~~R~d~v~~F~~~l~G~~~~~~g~~~~~~~~~~~~p~i~ 514 (755)
T 2nq5_A 443 --------ISDAEYKQFIQAEIERWIRIQEDLDLDVLVHGEFERVDMVEFFGQKLAGFTTTKFGWVQSYGSRAVKPPIIY 514 (755)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHHHHTCSBBCCBCTTCSCTTHHHHTTEEEEECCSSCCEEEETTEEECCCEEE
T ss_pred --------CCHHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccHHHHHHHhCCCcccccCCccccccccCCCCCEec
Confidence 999999999999999999999999999999999999999999999999999998999999999999999999
Q ss_pred ccCCCCCCcchhHHHHHHhcCCCCceeeechHHHHhhcccccCCCChHHHHHHHHHHHHHHHHHHHHcCCcEEEEcCccc
Q 003819 558 GDVSRPKAMTVFWSSMAQSMTKRPMKGMLTGPVTILNWSFVRNDQPRFETCYQIALAIKDEVEDLEKAGITVIQIDEAAL 637 (793)
Q Consensus 558 g~v~~~~~~~~~~~~~aq~~t~kpvK~~LtGPvTll~~s~~~~~~~~~e~~~~lA~al~~ev~~L~~aGv~~IQIDEPal 637 (793)
|+|+++.||+++|++|+|+++++|||++||||+|++.|++.+++.++++++.++|.++++|+++|+++||++||||||++
T Consensus 515 G~i~~~~p~~ve~~~~l~~~t~~pvK~~l~GP~Tl~~~~~~r~~~~~~el~~~lA~a~~~ei~~L~~aG~~~IQiDEP~l 594 (755)
T 2nq5_A 515 GDVQHLEPITVEETVYAQSLTDRPVKGMLTGPITITNWSFERTDIPRDQLFNQIGLAIKDEIKLLENAGIAIIQVDEAAL 594 (755)
T ss_dssp EEEEECSCSSHHHHHHHHHTCSSCBEEEEECHHHHHHHSBCCSSSCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCH
T ss_pred CCccCCCCCHHHHHHHHHHhcCCCeEEEecCHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHHHHcCCCEEEEcCCcc
Confidence 99999999999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred ccCCCCCcccHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCchhHHHHHHcCCCcEEEEecCCCChhhHHHhhhcccC
Q 003819 638 REGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDADVITIENSRSDEKLLSVFREGVKY 717 (793)
Q Consensus 638 ~~~l~l~~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~C~g~~~~i~~~l~~l~~D~isiE~~r~~~~~L~~~~~~~~~ 717 (793)
++++++++.+++.|++|+++++|.++++++++++||+|||||+|+++++.|.++++|+|+||++|++++.|+.+.+ +.+
T Consensus 595 ~~~l~~~~~~~~~~~~~av~~l~~~~~~v~~~~~i~~HiC~G~~~~i~~~L~~~~aD~islE~~rsd~e~L~~~~~-~~~ 673 (755)
T 2nq5_A 595 REGLPLRKSKQKAYLDDAVHAFHIATSSVKDETQIHTHMCYSKFDEIIDAIRALDADVISIETSRSHGDIIESFET-AVY 673 (755)
T ss_dssp HHHSCSSHHHHHHHHHHHHHHHHHHHSSSCTTSEEEEEECCSCCSTTHHHHHHHCCSEEEC-------------------
T ss_pred cccccccCCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEeccCCcHHHHHHHHhCCCCEEEEecCCCCHHHHHHHHh-ccC
Confidence 9999888888999999999999999999988899999999999999999999999999999988888888888776 445
Q ss_pred CCeEeeeeecCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEcCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHhh
Q 003819 718 RAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLESNILWVNPDCGLKTRKYSEVKPALSNMVAAAKLLRTQLAS 791 (793)
Q Consensus 718 ~~~i~~GVvD~~s~~ves~eev~~~i~~al~~i~~~~l~vsPdCGL~t~~~~~~~~kL~~mv~aa~~~r~~~~~ 791 (793)
++.|++||||+|++.+|++|+|+++|+++++++|++++||||||||++++|+++++||++||+||+.+|+++++
T Consensus 674 ~~~v~lGvvd~~s~~ve~~eeV~~ri~~a~~~v~~e~l~lsPdCGl~t~t~~e~~~kL~~mveaA~~vr~~~~~ 747 (755)
T 2nq5_A 674 PLGIGLGVYDIHSPRVPTKEEVVANIERPLRQLSPTQFWVNPDCGLKTRQEPETIAALKVLVAATKEVRQKLGN 747 (755)
T ss_dssp -CEEEEECSCTTSSCCCCHHHHHHHHHGGGGSSCGGGEEEECSSCCTTSCHHHHHHHHHHHHHHHHHHHHC---
T ss_pred CCeEEEeeccCccCCCCCHHHHHHHHHHHHHhCCcccEEEeCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 78999999999999999999999999999999999999999999999999999999999999999999998864
No 5
>3rpd_A Methionine synthase (B12-independent); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, rossmann fold, Zn, TRA; HET: MSE; 1.50A {Shewanella SP}
Probab=100.00 E-value=2.9e-77 Score=657.20 Aligned_cols=330 Identities=25% Similarity=0.429 Sum_probs=305.5
Q ss_pred HHHHHHhccCCCCccccccccCCCcHHHHHHHHHHHccchhhHHHHHHhhccccceeeeehhhhcccCCHHHHHHHHHHH
Q 003819 419 RLDAQQKKLNLPNLPTTTIGSFPQTMDLRRVRREFKAKKRVLLLFHILLLNFHHFQIVFHKLVFYFRISEDDYVKTIKEE 498 (793)
Q Consensus 419 r~~~q~~~~~~p~~~tt~iGSfPr~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 498 (793)
..++|+++||||+||||||||||||.||+++|++|++|+ ||.++|+++++++
T Consensus 5 ~~~~~~~~~~~~~~ptt~vGSfprp~~l~~ar~~~~~g~----------------------------i~~~~l~~~~~~a 56 (357)
T 3rpd_A 5 KTRLNKTSLNQALLPTSTAGSLPKPLWLAEPETLWSPWK----------------------------LQGEELITGKHDA 56 (357)
T ss_dssp --------CCCCSSCCCCSSCCCCCTTTBCTTCSSCCBS----------------------------CCHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCcccceeccCCCCHHHHHHHHHHhcCC----------------------------CcHHHHHHHHHHH
Confidence 345799999999999999999999999999999999999 9999999999999
Q ss_pred HHHHHHHHHHcCCCcccCCCCccchhHHHHHhhccCceeeccceeeecCCcc-ccCcEEEccCCCCCCcchhHHHHHHhc
Q 003819 499 INNVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRC-VKPPIIYGDVSRPKAMTVFWSSMAQSM 577 (793)
Q Consensus 499 i~~~i~~Q~~~Gldvi~~Ge~~r~d~v~~f~e~l~G~~~~~~g~v~~~~~~~-~~~P~i~g~v~~~~~~~~~~~~~aq~~ 577 (793)
|+++|+.|+++||||||||||+|+||++||+++|+||.++.+||+++| ++| +++|+|+|+|++++|++++|++|+|++
T Consensus 57 i~~~V~~Q~~~GldvvtdGE~~R~d~~~~f~~~l~G~~~~~~~~v~~~-~~~~~~~p~i~G~v~~~~~~~v~~~~~~~~~ 135 (357)
T 3rpd_A 57 LRLSLQDQQLAGIDIVSDGEQTRQHFVTTFIEHLNGVDFSKRKIVKIR-DRYDASVPTVVGPVSRQKSVFVEDAKFLRKQ 135 (357)
T ss_dssp HHHHHHHHHHTTCSSBCCTTTTCSCTTHHHHHTSEEEEEEEEEEEEET-TTEEEEEEEEEEEEECCSCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcccCCCcchhhHHHHHHHhCCCeeeccCcccccc-CCceeeCCEEEccCCCCCCCcHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999 777 689999999999999999999999999
Q ss_pred CCCCceeeechHHHHhhcccccCCCChHHHHHHHHHHHHHHHHHHHHcCCcEEEEcCcccccCCCCCcccHHHHHHHHHH
Q 003819 578 TKRPMKGMLTGPVTILNWSFVRNDQPRFETCYQIALAIKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVH 657 (793)
Q Consensus 578 t~kpvK~~LtGPvTll~~s~~~~~~~~~e~~~~lA~al~~ev~~L~~aGv~~IQIDEPal~~~l~l~~~~~~~~l~~av~ 657 (793)
|++|+|+|||||+||+.|+++++|.++++++.|||.+|++|+++|+++||++||||||+|++. +++|.+|+++
T Consensus 136 t~~~vK~~lpgP~t~~~~~~~~~y~~~~e~~~dlA~a~~~ei~~l~~aG~~~IQiDeP~l~~~-------~~~~~~~~v~ 208 (357)
T 3rpd_A 136 TTQPIKWALPGPMTMIDTLYDDHYKSREKLAWEFAKILNEEAKELEAAGVDIIQFDEPAFNVF-------FDEVNDWGIA 208 (357)
T ss_dssp CSSCBEEEEECHHHHHTSSEESSSCCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECGGGGTC-------HHHHHHTHHH
T ss_pred ccCCceEEeCCHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEecCcccccc-------HHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999863 5789999999
Q ss_pred HHHHHhcCCCCCCeEEEEeCCC------------------CchhHHHHHHcCCCcEEEEecCCC--ChhhHHHhhhcccC
Q 003819 658 SFRITNCGVQDTTQVHTHMCYS------------------NFNDIIHSIMDMDADVITIENSRS--DEKLLSVFREGVKY 717 (793)
Q Consensus 658 a~~~~~~~v~~~~~I~lH~C~g------------------~~~~i~~~l~~l~~D~isiE~~r~--~~~~L~~~~~~~~~ 717 (793)
++|.++++++. .+.+||||| +|+++++.|.++++|+|++|.+++ ++++++.+.
T Consensus 209 ~~n~~~~~~~~--~~~iHiC~G~~~~~n~d~~~t~~~~~g~y~~i~~~l~~~~~D~i~lE~~~~r~~~e~l~~~~----- 281 (357)
T 3rpd_A 209 CLERAIEGLKC--ETAVHICYGYGIKANTDWKKTLGSEWRQYEEVFPKLQKSNIDIISLECHNSHVPMELLELIR----- 281 (357)
T ss_dssp HHHHHHTTCCS--EEEEEECSCCSSHHHHHHHTTSCSCCCGGGGTHHHHHHSSCCEEEECCTTCCCCGGGGGGGT-----
T ss_pred HHHHHHhCCCC--ceEEEEecCCccCCccccccccccccCcHHHHHHHHHhCCCCEEEEEecCCCCChHHHHhcC-----
Confidence 99999999974 567799996 479999999999999999997654 566666554
Q ss_pred CCeEeeeeecCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEcCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHhh
Q 003819 718 RAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLESNILWVNPDCGLKTRKYSEVKPALSNMVAAAKLLRTQLAS 791 (793)
Q Consensus 718 ~~~i~~GVvD~~s~~ves~eev~~~i~~al~~i~~~~l~vsPdCGL~t~~~~~~~~kL~~mv~aa~~~r~~~~~ 791 (793)
++.|++||||+||+++|++|+|+++|+++++++|++++||||||||++++|+++++||++||+||+.+|+++.+
T Consensus 282 ~k~v~lGvvd~~s~~ve~~eev~~ri~~a~~~v~~~~l~lsPdCGl~~~~~~~a~~kL~~mv~aa~~~r~~l~~ 355 (357)
T 3rpd_A 282 GKKVMVGAIDVATDTIETAEEVADTLRKALKFVDADKLYPCTNCGMTPLSHQVTRGKLNALSAGAEIVRKELLA 355 (357)
T ss_dssp TSEEEEECSCTTCSSCCCHHHHHHHHHHHHTTSCGGGEEEECSSCCTTSCHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCEEEeccccCcCCCCCCHHHHHHHHHHHHHhCCcccEEEeCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999875
No 6
>1ypx_A Putative vitamin-B12 independent methionine synth protein; alpha-beta protein; 2.60A {Listeria monocytogenes}
Probab=100.00 E-value=6.2e-72 Score=620.50 Aligned_cols=329 Identities=17% Similarity=0.204 Sum_probs=284.6
Q ss_pred CCCccccccccCCCcHHHHHHHHHHHccchhhHHHHHHhhccccceeeeehhhhcccCCHHHHHHHHHHHHHHHHHHHHH
Q 003819 429 LPNLPTTTIGSFPQTMDLRRVRREFKAKKRVLLLFHILLLNFHHFQIVFHKLVFYFRISEDDYVKTIKEEINNVVKLQEE 508 (793)
Q Consensus 429 ~p~~~tt~iGSfPr~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~i~~Q~~ 508 (793)
+|+||||||||||||++|+++|++|++|+ ||.++|++.++++|+++|+.|++
T Consensus 4 ~~~~~tt~vGSfprp~~l~~ar~~~~~g~----------------------------i~~~~l~~~~~~~i~~~v~~Q~~ 55 (375)
T 1ypx_A 4 VAPFYADHVGSILRTKGIKDAREKFQSGE----------------------------ITALELRKIENTEIKYIVEKQKE 55 (375)
T ss_dssp SSSCSBCCCSCCCCCHHHHHHHHHHHHTS----------------------------SCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccceeCcCCCCHHHHHHHHHhhcCC----------------------------CCHHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999999999 99999999999999999999999
Q ss_pred cCCCcccCCCCccchhHHHHHhhccCce-eeccceeeec--CCccccCcEEEccCCCC-CCcchhHHHHHHhcCCC-C-c
Q 003819 509 LDIDVLVHGEPERNDMVEYFGEQLSGFA-FTVNGWVQSY--GSRCVKPPIIYGDVSRP-KAMTVFWSSMAQSMTKR-P-M 582 (793)
Q Consensus 509 ~Gldvi~~Ge~~r~d~v~~f~e~l~G~~-~~~~g~v~~~--~~~~~~~P~i~g~v~~~-~~~~~~~~~~aq~~t~k-p-v 582 (793)
+|||+||||||+|+||++||+++|+||. ++.+||+|++ +++ +++|+|+|+|+++ +| +++|++|+++++++ | +
T Consensus 56 ~GldvvtdGE~~R~d~~~~f~~~l~G~~~~~~~~~~~f~~~~~~-~~~p~i~g~i~~~~~p-~~~~~~~l~~~~~~~~~v 133 (375)
T 1ypx_A 56 VGLKSITDGEFRRAWWHFDFLENLDGVEGYDAAGGIQFSKVQTK-SHSVKITGPIDFTTHP-FIEDFIFLKEAVGDNHVA 133 (375)
T ss_dssp HTCSEECCTTTTC--CCHHHHTTSEEEEEC-----------------CEEEEEEEECSCCT-HHHHHHHHHHHHCSSSEE
T ss_pred hCCCcccCCCcchhhHHHHHHHHCCCeeeecCCCceeecCCCCC-ccCceecCCCCCCCCc-hHHHHHHHHHHhcCCCce
Confidence 9999999999999999999999999999 7889999944 444 8899999999988 77 89999999999987 8 5
Q ss_pred eeeechHHHHhhcccccCC--CCh-HHHHHHHHHHHHHHHHHHHHcCCcEEEEcCcccccCC--------CCCcccHHHH
Q 003819 583 KGMLTGPVTILNWSFVRND--QPR-FETCYQIALAIKDEVEDLEKAGITVIQIDEAALREGL--------PLRKSEQDFY 651 (793)
Q Consensus 583 K~~LtGPvTll~~s~~~~~--~~~-~e~~~~lA~al~~ev~~L~~aGv~~IQIDEPal~~~l--------~l~~~~~~~~ 651 (793)
|++||||+|++.|++.+++ .++ ++++.+||.+|++|+++|+++||++||||||++++.+ +.++.+++.|
T Consensus 134 K~~l~gP~tl~~~~~~~~~~Y~~~~~~l~~~la~a~~~ei~~l~~aG~~~IQiDeP~l~~~l~~~~~~~~~~~~~~~~~~ 213 (375)
T 1ypx_A 134 KQTIPSPAMLHYRGDIEYQPYLDDAEKFANDLATAYQKAIQAFYDAGCRYLQLDDTSWSYLCSDEQREVVRQRGFDPETL 213 (375)
T ss_dssp CEEEECTHHHHHHEEECSHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECHHHHTTSCC--------CCSTTTH
T ss_pred EEecCCHHHHHHHHhcchhhccChHHHHHHHHHHHHHHHHHHHHHCCCCEEEecCCchhhhhccchhcccccccCCHHHH
Confidence 9999999999999986543 377 9999999999999999999999999999999999887 5566678899
Q ss_pred HHHHHHHHHHHhcCCCCCCeEEEEeCCC----------CchhHHHHHH-cCCCcEEEEe--cCCC-ChhhHHHhhhcccC
Q 003819 652 LKWAVHSFRITNCGVQDTTQVHTHMCYS----------NFNDIIHSIM-DMDADVITIE--NSRS-DEKLLSVFREGVKY 717 (793)
Q Consensus 652 l~~av~a~~~~~~~v~~~~~I~lH~C~g----------~~~~i~~~l~-~l~~D~isiE--~~r~-~~~~L~~~~~~~~~ 717 (793)
++|+++++|.++++++++++|++||||| +|+++++.|. ++++|+|++| ..|+ +++.|+.+.+ .
T Consensus 214 ~~~~v~~~n~~~~~~~~~~~i~~HiC~gn~~s~~~~~g~~~~i~~~l~~~~~~d~i~lE~~~~r~g~~e~L~~~~~---~ 290 (375)
T 1ypx_A 214 QETYKNLINEAIKHKPADMVITMHICRGNFRSTWIAEGGYGPVAETLFGKLNIDGFFLEYDNERSGDFAPLKYVTR---P 290 (375)
T ss_dssp HHHHHHHHHHHTTTCCTTCEEEEEECCC----------CCSGGGHHHHTTCCCSEEEEECCSCC---CCTTCCCCC---T
T ss_pred HHHHHHHHHHHHhcCCCCCeEEEEEeccccCCccccccchHHHHHHHHhhCCCCEEEEEecCCCCCcHHHHHHhhh---c
Confidence 9999999999999998789999999998 6789999999 9999999999 4566 6666665443 2
Q ss_pred CCeEeeeeecCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEcCCCCCC------CCChhHHHHHHHHHHHHHHHHHHHHh
Q 003819 718 RAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLESNILWVNPDCGLK------TRKYSEVKPALSNMVAAAKLLRTQLA 790 (793)
Q Consensus 718 ~~~i~~GVvD~~s~~ves~eev~~~i~~al~~i~~~~l~vsPdCGL~------t~~~~~~~~kL~~mv~aa~~~r~~~~ 790 (793)
++.|++||||++++++|++|+|+++|+++++++|.+++||||||||+ +++|+++++||++||+||+.+|+++.
T Consensus 291 ~~~v~lGvvd~~~~~~e~~e~v~~ri~~a~~~v~~e~l~lsPdCGl~s~~~g~~~t~~~a~~kL~~~v~~A~~~~~~~~ 369 (375)
T 1ypx_A 291 DLKIVLGLITSKTGELEDEAAIKARIEEASEIVPLSQLRLSPQCGFASTEEGNILTEEEQWDKLRYVVRLANDIWGELE 369 (375)
T ss_dssp TCEEEEEEECSSSCC-CCSHHHHHHHHHHHHHSCGGGEEEEESSCCC--------CHHHHHHHHHHHHHHHHHHSCC--
T ss_pred CCeEEEeeecCcCCCCCCHHHHHHHHHHHHHhcCccceEecCCCCccccccCCCCCHHHHHHHHHHHHHHHHHHHhchh
Confidence 67999999999999999999999999999999999999999999999 89999999999999999999998774
No 7
>1t7l_A 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; TIM barrel, methyltetrahydrofolate, zinc; 2.00A {Thermotoga maritima} PDB: 3bq5_A 3bq6_A 1xdj_A 1xr2_A* 1xpg_A*
Probab=100.00 E-value=2.1e-54 Score=507.57 Aligned_cols=314 Identities=15% Similarity=0.170 Sum_probs=257.8
Q ss_pred ceecccCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHcCCcccCCCCcccchhhhhhHhhhCCCCCc
Q 003819 2 ASHVVGYPRMGPKRELKFALESFWDGKSSADELQNVAADLRASIWNQMADAGIKFIPSNTFSYYDQVLDTTAMLGAVPPR 81 (793)
Q Consensus 2 ~t~~lG~PRig~~reLK~A~e~yw~g~is~~eL~~~~~~~~~~~~~~Q~~aGld~ItdGefs~yD~vLD~~~~~g~ip~R 81 (793)
+|||++|||+ .|||+|+|+||+|+||+++|+++++++|+++|+.|+++|||+||||||||||+|+|++.+||+||.|
T Consensus 438 Tt~IGSfPrp---~ELK~Are~y~~G~Is~eeL~~~~~~~i~~~V~~QeeaGLDvItdGEFsR~D~Vldf~~~L~Gi~~~ 514 (766)
T 1t7l_A 438 TTTIGSFPQT---PEVRKMRSKYRKGEISKEEYEAFIKEQIKKAIELQEEIGLDVLVHGEFERTDMVEFFAEKLNGIATT 514 (766)
T ss_dssp BCCCSCCCCC---HHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHTCSSBCCCCTTCSSHHHHHHTTSEEEECC
T ss_pred eeeeCcCCCC---HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCccCCCCcchhhHHHHHHHHhCCcccc
Confidence 4677779999 9999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred ccCCCCccccchhhhhccCCCCCCccccceecccCceeecceecCCCccccCCchhHHHHHHHHHcCC-CCceEeehHHH
Q 003819 82 YSWNGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHYIVPELGPDVNFSYASHKAVQEYKEAKALGM-ETVPVLVGPVS 160 (793)
Q Consensus 82 ~~~~~~~~~l~~yFa~arG~~~~~a~~mtKwFdtNYhY~vPe~~~~~~~~l~~~~~~~e~~~a~~~g~-~~K~vl~GP~T 160 (793)
+..-....+.+.|| .|.+.|+ .+...+..+++|++|++++. ++|++|+||+|
T Consensus 515 ~~g~~~~~~~~~~~-------------------------~pi~~G~--i~ra~pMtlde~~~Aksl~~~pvK~~LtGPvT 567 (766)
T 1t7l_A 515 QNGWVLSYGSRCYR-------------------------PPIIYGT--VTRPEPMTLKEITYAQSLTEKPVKGMLTGPVT 567 (766)
T ss_dssp SSCCEEEETTEEEC-------------------------CCEEEEE--EECCSCSSHHHHHHHHHTCSSCBEEEEECHHH
T ss_pred cccccccccccccc-------------------------CceeecC--CccCCcChHHHHHHHHHhcCCCeEEEEeCHHH
Confidence 63100000122334 2333332 22223446999999999964 48999999999
Q ss_pred HhhhccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEeeccccccCCChH---HHHHHHHHHHHHHh--cc-C
Q 003819 161 YLLLSKPAKGVEKSFSLLSLIDKIIPVYKEVVAELKAAGATWIQFDEPTLVLDLDSH---KLQAFSDAYSELQS--SL-S 234 (793)
Q Consensus 161 ~l~ls~~~~~~~~~~~~~~ll~~L~~~Y~~~l~~L~~aG~~~VQiDEP~L~~d~~~~---~~~~~~~~y~~l~~--~~-~ 234 (793)
|+.+++..+ +.++.+++++|+++|++++++|+++||+|||||||+|+.+++.. +.+.+..+|+.+.. +. .
T Consensus 568 lL~ls~~r~----d~~r~ell~dLA~ayreeI~~L~~AGa~~IQIDEPaL~~~L~~~~~d~~~~l~~a~~aln~a~gv~~ 643 (766)
T 1t7l_A 568 IMSWSYYRE----DIPEREIAYQIALAINEEVKDLEEAGIKIVQIDEPAFREKAPIKKSKWPEYFEWAINAFNLAANARP 643 (766)
T ss_dssp HHHTSEECS----SSCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECTHHHHTSCSSGGGHHHHHHHHHHHHHHHTCCCT
T ss_pred HHHHhhccC----CCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEcCCcccccCCCcchhHHHHHHHHHHHHHHhhcCCC
Confidence 998887432 24789999999999999999999999999999999999877532 56677777766643 22 2
Q ss_pred CCcEEEEeccCCCchhhHHHHhcCCCccEEEEEeccCCCChhhHhhhCCC-CCEEEEEEeeCCCCCCCCHHHHHHHHHHH
Q 003819 235 GLNVLIETYFADVPAETYKILTSLKGVTGFGFDLIRGTKTLDLIKTEFPL-GKYLFAGVVDGRNIWANDLASSLTTLQDL 313 (793)
Q Consensus 235 ~~~i~l~tyfg~~~~~~~~~l~~lp~Vd~l~lD~~~~~~~l~~l~~~~p~-~k~l~lGvVdgrn~w~ed~~~i~~~i~~~ 313 (793)
+++|++|+|||++ +++++.|.++| ||+|+||.+++..++......+|. +|.|++||||+||+|++|+++++++|+++
T Consensus 644 ~~~I~lH~C~G~~-~di~~~L~~l~-VD~IsLE~~Rs~~elL~~l~~~p~~~k~L~lGVVD~rn~~ved~EeI~~rI~~a 721 (766)
T 1t7l_A 644 ETQIHAHMCYSDF-NEIIEYIHQLE-FDVISIEASRSKGEIISAFENFKGWIKQIGVGVWDIHSPAVPSINEMREIVERV 721 (766)
T ss_dssp TSEEEEECCCSCC-TTTHHHHTTSC-CSEEEEECTTTTTGGGHHHHTSTTCCSEEEEECSCTTSCSCCCHHHHHHHHHHH
T ss_pred CceEEEEEecCch-HHHHHHHHcCC-CCEEEEecCCCchhHHHHHHhccccCCeEEEEEECCCCCCCCCHHHHHHHHHHH
Confidence 4689999999999 89999999999 999999988764333222222432 48999999999999999999999999999
Q ss_pred hhhcCCCcEEEeCCCCCcccccccccccCCcHHHHhHHHHHHH
Q 003819 314 AGTVGKDKVVVSTSCSLLHTAVDLENETKLDQEIKSWLAFAAQ 356 (793)
Q Consensus 314 ~~~v~~e~l~vspsCgL~hvP~~~~~E~~l~~~~~~~lafA~q 356 (793)
.+++|.+||||||||||+|+|++ .+.+.+++|++||+|
T Consensus 722 ~~~Vg~erL~VsPdCGL~~~p~~-----e~~~kLk~mvaaAke 759 (766)
T 1t7l_A 722 LRVLPKELIWINPDCGLKTRNWD-----EVIPSLRNMVALAKE 759 (766)
T ss_dssp TTTSCGGGEEEECSSCCTTSCHH-----HHHHHHHHHHHHHHH
T ss_pred HHhcCcccEEEeCCCCCCCCCHH-----HHHHHHHHHHHHHHH
Confidence 99999999999999999999987 357788888888875
No 8
>3rpd_A Methionine synthase (B12-independent); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, rossmann fold, Zn, TRA; HET: MSE; 1.50A {Shewanella SP}
Probab=100.00 E-value=2.3e-49 Score=435.56 Aligned_cols=312 Identities=18% Similarity=0.148 Sum_probs=265.5
Q ss_pred ceecccCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHcCCcccCCCCcccchhhhhhHhhhCCCCCc
Q 003819 2 ASHVVGYPRMGPKRELKFALESFWDGKSSADELQNVAADLRASIWNQMADAGIKFIPSNTFSYYDQVLDTTAMLGAVPPR 81 (793)
Q Consensus 2 ~t~~lG~PRig~~reLK~A~e~yw~g~is~~eL~~~~~~~~~~~~~~Q~~aGld~ItdGefs~yD~vLD~~~~~g~ip~R 81 (793)
+||+++|||+ .|||+|+++|++|+||.++|.++.++++++.|+.|+++|||+||||||+|.|+|+++...++++-
T Consensus 20 tt~vGSfprp---~~l~~ar~~~~~g~i~~~~l~~~~~~ai~~~V~~Q~~~GldvvtdGE~~R~d~~~~f~~~l~G~~-- 94 (357)
T 3rpd_A 20 TSTAGSLPKP---LWLAEPETLWSPWKLQGEELITGKHDALRLSLQDQQLAGIDIVSDGEQTRQHFVTTFIEHLNGVD-- 94 (357)
T ss_dssp CCCSSCCCCC---TTTBCTTCSSCCBSCCHHHHHHHHHHHHHHHHHHHHHTTCSSBCCTTTTCSCTTHHHHHTSEEEE--
T ss_pred cceeccCCCC---HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCcchhhHHHHHHHhCCCee--
Confidence 3666779999 89999999999999999999999999999999999999999999999999999999987776651
Q ss_pred ccCCCCccccchhhhhccCCCCCCccccceecccCceeecceecCCCccccCCchhHHHHHHHHHc-CCCCceEeehHHH
Q 003819 82 YSWNGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHYIVPELGPDVNFSYASHKAVQEYKEAKAL-GMETVPVLVGPVS 160 (793)
Q Consensus 82 ~~~~~~~~~l~~yFa~arG~~~~~a~~mtKwFdtNYhY~vPe~~~~~~~~l~~~~~~~e~~~a~~~-g~~~K~vl~GP~T 160 (793)
+. ..| -. |+.+||+|.+|.++|+ ++...+.+++++++++++ +.++|.+||||+|
T Consensus 95 ~~--------------~~~--------~v-~~~~~~~~~~p~i~G~--v~~~~~~~v~~~~~~~~~t~~~vK~~lpgP~t 149 (357)
T 3rpd_A 95 FS--------------KRK--------IV-KIRDRYDASVPTVVGP--VSRQKSVFVEDAKFLRKQTTQPIKWALPGPMT 149 (357)
T ss_dssp EE--------------EEE--------EE-EETTTEEEEEEEEEEE--EECCSCSSHHHHHHHHHHCSSCBEEEEECHHH
T ss_pred ec--------------cCc--------cc-cccCCceeeCCEEEcc--CCCCCCCcHHHHHHHHhhccCCceEEeCCHHH
Confidence 10 011 11 2347888999999984 666678899999999987 7899999999999
Q ss_pred HhhhccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEeeccccccCCChHHHHHHHHHHHHHHhccCCCcEEE
Q 003819 161 YLLLSKPAKGVEKSFSLLSLIDKIIPVYKEVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLI 240 (793)
Q Consensus 161 ~l~ls~~~~~~~~~~~~~~ll~~L~~~Y~~~l~~L~~aG~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l 240 (793)
++.++.. .. |.++.+++.+|+.+|++++++|+++||++||||||+|.... .+..+...++++....+.+ ..+.+
T Consensus 150 ~~~~~~~-~~---y~~~~e~~~dlA~a~~~ei~~l~~aG~~~IQiDeP~l~~~~-~~~~~~~v~~~n~~~~~~~-~~~~i 223 (357)
T 3rpd_A 150 MIDTLYD-DH---YKSREKLAWEFAKILNEEAKELEAAGVDIIQFDEPAFNVFF-DEVNDWGIACLERAIEGLK-CETAV 223 (357)
T ss_dssp HHTSSEE-SS---SCCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECGGGGTCH-HHHHHTHHHHHHHHHTTCC-SEEEE
T ss_pred HHHHhhh-cc---CCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEecCccccccH-HHHHHHHHHHHHHHHhCCC-CceEE
Confidence 9877763 22 46889999999999999999999999999999999998642 3334556677777776653 57788
Q ss_pred EeccC------------------CCchhhHHHHhcCCCccEEEEEeccCCCChhhHhhhCCCCCEEEEEEeeCCCCCCCC
Q 003819 241 ETYFA------------------DVPAETYKILTSLKGVTGFGFDLIRGTKTLDLIKTEFPLGKYLFAGVVDGRNIWAND 302 (793)
Q Consensus 241 ~tyfg------------------~~~~~~~~~l~~lp~Vd~l~lD~~~~~~~l~~l~~~~p~~k~l~lGvVdgrn~w~ed 302 (793)
|+||| ++ +++++.|.+++ ||+|+||+++...+++.+.. + ++|.|++||||++++++|+
T Consensus 224 HiC~G~~~~~n~d~~~t~~~~~g~y-~~i~~~l~~~~-~D~i~lE~~~~r~~~e~l~~-~-~~k~v~lGvvd~~s~~ve~ 299 (357)
T 3rpd_A 224 HICYGYGIKANTDWKKTLGSEWRQY-EEVFPKLQKSN-IDIISLECHNSHVPMELLEL-I-RGKKVMVGAIDVATDTIET 299 (357)
T ss_dssp EECSCCSSHHHHHHHTTSCSCCCGG-GGTHHHHHHSS-CCEEEECCTTCCCCGGGGGG-G-TTSEEEEECSCTTCSSCCC
T ss_pred EEecCCccCCccccccccccccCcH-HHHHHHHHhCC-CCEEEEEecCCCCChHHHHh-c-CCCEEEeccccCcCCCCCC
Confidence 99986 35 78999999999 99999999986556776653 4 5899999999999999999
Q ss_pred HHHHHHHHHHHhhhcCCCcEEEeCCCCCcccccccccccCCcHHHHhHHHHHHHHHHHHHHHHHHcc
Q 003819 303 LASSLTTLQDLAGTVGKDKVVVSTSCSLLHTAVDLENETKLDQEIKSWLAFAAQKVVEVNALAKALS 369 (793)
Q Consensus 303 ~~~i~~~i~~~~~~v~~e~l~vspsCgL~hvP~~~~~E~~l~~~~~~~lafA~qKl~El~~l~~~l~ 369 (793)
++++.++|+++.+++|.+++||||||||...|.+ -|.+||+.|+..++.++
T Consensus 300 ~eev~~ri~~a~~~v~~~~l~lsPdCGl~~~~~~----------------~a~~kL~~mv~aa~~~r 350 (357)
T 3rpd_A 300 AEEVADTLRKALKFVDADKLYPCTNCGMTPLSHQ----------------VTRGKLNALSAGAEIVR 350 (357)
T ss_dssp HHHHHHHHHHHHTTSCGGGEEEECSSCCTTSCHH----------------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcccEEEeCCCCCCCCCHH----------------HHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999977654 49999999999988764
No 9
>1ypx_A Putative vitamin-B12 independent methionine synth protein; alpha-beta protein; 2.60A {Listeria monocytogenes}
Probab=100.00 E-value=4.1e-48 Score=429.42 Aligned_cols=325 Identities=16% Similarity=0.186 Sum_probs=255.2
Q ss_pred ceecccCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHcCCcccCCCCcccchhhhhhHhhhCCCCCc
Q 003819 2 ASHVVGYPRMGPKRELKFALESFWDGKSSADELQNVAADLRASIWNQMADAGIKFIPSNTFSYYDQVLDTTAMLGAVPPR 81 (793)
Q Consensus 2 ~t~~lG~PRig~~reLK~A~e~yw~g~is~~eL~~~~~~~~~~~~~~Q~~aGld~ItdGefs~yD~vLD~~~~~g~ip~R 81 (793)
+||+++|||+ ++||+|+++|++|+||.++|.++.++.+++.|+.|+++|||+||||||+|+|+|+|+...|+++. +
T Consensus 9 tt~vGSfprp---~~l~~ar~~~~~g~i~~~~l~~~~~~~i~~~v~~Q~~~GldvvtdGE~~R~d~~~~f~~~l~G~~-~ 84 (375)
T 1ypx_A 9 ADHVGSILRT---KGIKDAREKFQSGEITALELRKIENTEIKYIVEKQKEVGLKSITDGEFRRAWWHFDFLENLDGVE-G 84 (375)
T ss_dssp BCCCSCCCCC---HHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHTCSEECCTTTTC--CCHHHHTTSEEEE-E
T ss_pred cceeCcCCCC---HHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcchhhHHHHHHHHCCCee-e
Confidence 4666779999 99999999999999999999999999999999999999999999999999999999998887762 1
Q ss_pred ccCCCCccccchhhhhccCCCCCCccccceecccCce-eecceecCCCccccCCchhHHHHHHHHHc-CC-C-CceEeeh
Q 003819 82 YSWNGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYH-YIVPELGPDVNFSYASHKAVQEYKEAKAL-GM-E-TVPVLVG 157 (793)
Q Consensus 82 ~~~~~~~~~l~~yFa~arG~~~~~a~~mtKwFdtNYh-Y~vPe~~~~~~~~l~~~~~~~e~~~a~~~-g~-~-~K~vl~G 157 (793)
|. ..++.+ |..|++ |..|.+.|+ +++..+++++++++++++ +. + +|.+|||
T Consensus 85 ~~----------------------~~~~~~-f~~~~~~~~~p~i~g~--i~~~~~p~~~~~~~l~~~~~~~~~vK~~l~g 139 (375)
T 1ypx_A 85 YD----------------------AAGGIQ-FSKVQTKSHSVKITGP--IDFTTHPFIEDFIFLKEAVGDNHVAKQTIPS 139 (375)
T ss_dssp C---------------------------------------CEEEEEE--EECSCCTHHHHHHHHHHHHCSSSEECEEEEC
T ss_pred ec----------------------CCCcee-ecCCCCCccCceecCC--CCCCCCchHHHHHHHHHHhcCCCceEEecCC
Confidence 21 112233 445554 889999985 544445699999999987 33 4 6999999
Q ss_pred HHHHhhhccCCCCcCCCCCH-HHHHHHHHHHHHHHHHHHHHCCCCEEEeeccccccCCC--------------hHHHHHH
Q 003819 158 PVSYLLLSKPAKGVEKSFSL-LSLIDKIIPVYKEVVAELKAAGATWIQFDEPTLVLDLD--------------SHKLQAF 222 (793)
Q Consensus 158 P~T~l~ls~~~~~~~~~~~~-~~ll~~L~~~Y~~~l~~L~~aG~~~VQiDEP~L~~d~~--------------~~~~~~~ 222 (793)
|+|++.++...+.+ |.+. .+++++|+.+|++++++|+++||++||||||+|...++ ++..+.+
T Consensus 140 P~tl~~~~~~~~~~--Y~~~~~~l~~~la~a~~~ei~~l~~aG~~~IQiDeP~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 217 (375)
T 1ypx_A 140 PAMLHYRGDIEYQP--YLDDAEKFANDLATAYQKAIQAFYDAGCRYLQLDDTSWSYLCSDEQREVVRQRGFDPETLQETY 217 (375)
T ss_dssp THHHHHHEEECSHH--HHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECHHHHTTSCC--------CCSTTTHHHHH
T ss_pred HHHHHHHHhcchhh--ccChHHHHHHHHHHHHHHHHHHHHHCCCCEEEecCCchhhhhccchhcccccccCCHHHHHHHH
Confidence 99999776532222 2366 89999999999999999999999999999999986441 2345677
Q ss_pred HHHHHHHHhccC-CCcEEEEeccC----------CCchhhHHHHh-cCCCccEEEEEeccCC-CChhhHhhhCCC-CCEE
Q 003819 223 SDAYSELQSSLS-GLNVLIETYFA----------DVPAETYKILT-SLKGVTGFGFDLIRGT-KTLDLIKTEFPL-GKYL 288 (793)
Q Consensus 223 ~~~y~~l~~~~~-~~~i~l~tyfg----------~~~~~~~~~l~-~lp~Vd~l~lD~~~~~-~~l~~l~~~~p~-~k~l 288 (793)
.++++.+.++.+ +..+.+|+||| ++ +++++.|. +++ ||+|+|||++.+ +++++|.. ++. +|.|
T Consensus 218 v~~~n~~~~~~~~~~~i~~HiC~gn~~s~~~~~g~~-~~i~~~l~~~~~-~d~i~lE~~~~r~g~~e~L~~-~~~~~~~v 294 (375)
T 1ypx_A 218 KNLINEAIKHKPADMVITMHICRGNFRSTWIAEGGY-GPVAETLFGKLN-IDGFFLEYDNERSGDFAPLKY-VTRPDLKI 294 (375)
T ss_dssp HHHHHHHTTTCCTTCEEEEEECCC----------CC-SGGGHHHHTTCC-CSEEEEECCSCC---CCTTCC-CCCTTCEE
T ss_pred HHHHHHHHhcCCCCCeEEEEEeccccCCccccccch-HHHHHHHHhhCC-CCEEEEEecCCCCCcHHHHHH-hhhcCCeE
Confidence 788888776654 47899999998 66 78899999 999 999999999754 48998885 765 7899
Q ss_pred EEEEeeCCCCCCCCHHHHHHHHHHHhhhcCCCcEEEeCCCCCcccccccccccCCcHHHHhHHHHHHHHHHHHHHHHHHc
Q 003819 289 FAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVSTSCSLLHTAVDLENETKLDQEIKSWLAFAAQKVVEVNALAKAL 368 (793)
Q Consensus 289 ~lGvVdgrn~w~ed~~~i~~~i~~~~~~v~~e~l~vspsCgL~hvP~~~~~E~~l~~~~~~~lafA~qKl~El~~l~~~l 368 (793)
++||||++++++|++++++++|+++.+++|.+||||||||||.++--. ..++++ -|.+||+.|+..|+.+
T Consensus 295 ~lGvvd~~~~~~e~~e~v~~ri~~a~~~v~~e~l~lsPdCGl~s~~~g----~~~t~~------~a~~kL~~~v~~A~~~ 364 (375)
T 1ypx_A 295 VLGLITSKTGELEDEAAIKARIEEASEIVPLSQLRLSPQCGFASTEEG----NILTEE------EQWDKLRYVVRLANDI 364 (375)
T ss_dssp EEEEECSSSCC-CCSHHHHHHHHHHHHHSCGGGEEEEESSCCC------------CHH------HHHHHHHHHHHHHHHH
T ss_pred EEeeecCcCCCCCCHHHHHHHHHHHHHhcCccceEecCCCCccccccC----CCCCHH------HHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999932211 012222 4999999999999888
Q ss_pred cC
Q 003819 369 SG 370 (793)
Q Consensus 369 ~~ 370 (793)
.+
T Consensus 365 ~~ 366 (375)
T 1ypx_A 365 WG 366 (375)
T ss_dssp SC
T ss_pred Hh
Confidence 65
No 10
>1u1j_A 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; methionine, synthase, methyltetrahydrofolate; HET: C2F; 2.40A {Arabidopsis thaliana} SCOP: c.1.22.2 c.1.22.2 PDB: 1u1h_A* 1u1u_A 1u22_A*
Probab=100.00 E-value=3.6e-45 Score=437.73 Aligned_cols=313 Identities=16% Similarity=0.170 Sum_probs=268.3
Q ss_pred cccccCCCc---HHHHHHHHHHHccchhhHHHHHHhhccccceeeeehhhhcccCCHHHHHHHHHHHHHHHHHHHHHcCC
Q 003819 435 TTIGSFPQT---MDLRRVRREFKAKKRVLLLFHILLLNFHHFQIVFHKLVFYFRISEDDYVKTIKEEINNVVKLQEELDI 511 (793)
Q Consensus 435 t~iGSfPr~---~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~i~~Q~~~Gl 511 (793)
|++.||||+ +||++|+++||+|+ ||.++|.+..+++++++|+.|+++||
T Consensus 3 ~~~~g~PR~g~~reLk~a~e~~~~g~----------------------------i~~~~L~~~~~~~~~~~~~~Q~~aGl 54 (765)
T 1u1j_A 3 SHIVGYPRMGPKRELKFALESFWDGK----------------------------STAEDLQKVSADLRSSIWKQMSAAGT 54 (765)
T ss_dssp BBCSCCCCSCTTCHHHHHHHHHHHTS----------------------------SCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred cceecCCCCCCCHHHHHHHHHHhCCC----------------------------CCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 556689999 99999999999999 99999999999999999999999999
Q ss_pred CcccCCCCccchhHHHHHhhccCce--e----------------------eccceeeecCCcc-ccCcEEEccCCCC--C
Q 003819 512 DVLVHGEPERNDMVEYFGEQLSGFA--F----------------------TVNGWVQSYGSRC-VKPPIIYGDVSRP--K 564 (793)
Q Consensus 512 dvi~~Ge~~r~d~v~~f~e~l~G~~--~----------------------~~~g~v~~~~~~~-~~~P~i~g~v~~~--~ 564 (793)
|+||+|||+|+|+|.+|...|+|+- + +...|++||+||| |++|++.|+++.. .
T Consensus 55 d~i~~gdfs~yd~vld~~~~l~~ip~r~~~~~~~~~~~~yf~~arG~~~~~a~emtkwfdtNyhy~vPe~~~~~~~~~~~ 134 (765)
T 1u1j_A 55 KFIPSNTFAHYDQVLDTTAMLGAVPPRYGYTGGEIGLDVYFSMARGNASVPAMEMTKWFDTNYHYIVPELGPEVNFSYAS 134 (765)
T ss_dssp SBCEESCCCSSCHHHHHHHHTTCCCGGGCCCSSSCCHHHHHHHHHCCSSSCCCCEEECTTSSCEEECCEECTTCCCCCCC
T ss_pred CEeccCCcccchHHHHHHHHhCCcCcceeccccCccHHHHHHHhCCCccccchhhheecccCcCceeeEEcCCcccccCC
Confidence 9999999999999999988777654 1 1123679999998 8999999998754 3
Q ss_pred CcchhHHHHHHhcCCCCceeeechHHHHhhcccc-cC-C--CChHHHHHHHHHHHHHHHHHHHHcCCcEEEEcCcccccC
Q 003819 565 AMTVFWSSMAQSMTKRPMKGMLTGPVTILNWSFV-RN-D--QPRFETCYQIALAIKDEVEDLEKAGITVIQIDEAALREG 640 (793)
Q Consensus 565 ~~~~~~~~~aq~~t~kpvK~~LtGPvTll~~s~~-~~-~--~~~~e~~~~lA~al~~ev~~L~~aGv~~IQIDEPal~~~ 640 (793)
+..++++++|+++ +.++|++|+||+|++..+.. .. + .++.+++.+|+.+|++++++|.++||++||||||+|...
T Consensus 135 ~~~l~~~~~ak~~-g~~~K~~l~GP~Tll~l~k~~~~~~~~~~~~~ll~~L~~~y~~~l~~L~~aG~~~VQiDEP~L~~~ 213 (765)
T 1u1j_A 135 HKAVNEYKEAKAL-GVDTVPVLVGPVSYLLLSKAAKGVDKSFELLSLLPKILPIYKEVITELKAAGATWIQLDEPVLVMD 213 (765)
T ss_dssp CHHHHHHHHHHHT-TCCCEEEEECHHHHHHTCEECTTCCTTCCGGGGHHHHHHHHHHHHHHHHHTTCCEEEEECGGGGSC
T ss_pred cchHHHHHHHHhc-CCCceEEECCHHHHHHhhhcccccCccCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEcCCccccC
Confidence 4578999999988 68899999999999965552 22 3 268899999999999999999999999999999999977
Q ss_pred CCCCcccHHHHHHHHHHHHHHHhcCCC---CCCeEEEEeCCCCch-hHHHHHHcCC-CcEEEEecCCCChhhHHHhhhcc
Q 003819 641 LPLRKSEQDFYLKWAVHSFRITNCGVQ---DTTQVHTHMCYSNFN-DIIHSIMDMD-ADVITIENSRSDEKLLSVFREGV 715 (793)
Q Consensus 641 l~l~~~~~~~~l~~av~a~~~~~~~v~---~~~~I~lH~C~g~~~-~i~~~l~~l~-~D~isiE~~r~~~~~L~~~~~~~ 715 (793)
++ . . ..++++.+++.+. ++.+|++|+|||++. ++++.|.+++ +|+|++|..+.. +.++.+....
T Consensus 214 l~---~---~----~~~~~~~a~~~l~~~~~~~~i~lhtc~G~~~~~~~~~l~~l~~vd~l~lD~v~~~-~~l~~l~~~l 282 (765)
T 1u1j_A 214 LE---G---Q----KLQAFTGAYAELESTLSGLNVLVETYFADIPAEAYKTLTSLKGVTAFGFDLVRGT-KTLDLVKAGF 282 (765)
T ss_dssp CC---H---H----HHHHHHHHHHHSTTTTCSSEEEEECCSSCCCHHHHHHHTTCTTCCEEEEESSSCT-THHHHHHHCC
T ss_pred CC---H---H----HHHHHHHHHHHHHhhcCCCeEEEEeCCCCcchHHHHHHHcCCCCcEEEEEecCCc-ccHHHHHHhc
Confidence 53 1 1 1445555555552 257899999999999 9999999999 999999977654 4466665423
Q ss_pred cCCCeEeeeeecCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEcCCCCCC----------CCChhHH------HHHHHHHH
Q 003819 716 KYRAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLESNILWVNPDCGLK----------TRKYSEV------KPALSNMV 779 (793)
Q Consensus 716 ~~~~~i~~GVvD~~s~~ves~eev~~~i~~al~~i~~~~l~vsPdCGL~----------t~~~~~~------~~kL~~mv 779 (793)
+.++.+++||||++|+|.++++++.++++++++++|.+++||+|+|||. ..+++.+ ++||+.++
T Consensus 283 ~~~k~L~lGvVdgrni~~~d~e~v~~~l~~~~~~lg~~~l~lspsCgL~hvP~~~~~e~~l~~~~~~~~~fa~~Kl~el~ 362 (765)
T 1u1j_A 283 PEGKYLFAGVVDGRNIWANDFAASLSTLQALEGIVGKDKLVVSTSCSLLHTAVDLINETKLDDEIKSWMAFAAQKVVEVN 362 (765)
T ss_dssp CSSCEEEEEEECSSSCBCCCHHHHHHHHHHHHHHCCSSCEEEEESSCGGGSCSCGGGCCSSCHHHHTTBCCHHHHHHHHH
T ss_pred CCCCEEEEEeeCCcccCCCCHHHHHHHHHHHHHhcCCCcEEEcCCCCccCCccccccccCCCHHHHhhhHHHHHHHHHHH
Confidence 3367899999999999999999999999999999999999999999999 6788888 99999999
Q ss_pred HHHHHHHH
Q 003819 780 AAAKLLRT 787 (793)
Q Consensus 780 ~aa~~~r~ 787 (793)
++|+.+++
T Consensus 363 ~la~~l~~ 370 (765)
T 1u1j_A 363 ALAKALAG 370 (765)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhc
Confidence 99999874
No 11
>3ppg_A 5-methyltetrahydropteroyltriglutamate--homocystei methyltransferase; cobalamin-independent, surface entropy reduction; 1.98A {Candida albicans} PDB: 3ppf_A 3pph_A 3ppc_A
Probab=100.00 E-value=2.7e-42 Score=406.92 Aligned_cols=312 Identities=16% Similarity=0.218 Sum_probs=239.0
Q ss_pred ceecccCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHcCCcccCCCCcccchhhhhhHhhhCCCCCc
Q 003819 2 ASHVVGYPRMGPKRELKFALESFWDGKSSADELQNVAADLRASIWNQMADAGIKFIPSNTFSYYDQVLDTTAMLGAVPPR 81 (793)
Q Consensus 2 ~t~~lG~PRig~~reLK~A~e~yw~g~is~~eL~~~~~~~~~~~~~~Q~~aGld~ItdGefs~yD~vLD~~~~~g~ip~R 81 (793)
+||+++|||+ .||++|+++|.+|+||.++|.++.++.+++.++.|+++|||+||||||+|.|+|.++...++++-
T Consensus 465 tt~VGSfPRp---~~L~~aR~~~~~G~is~~el~~~~~~aI~~vV~~Qe~~GLdvvtDGE~~R~d~v~~F~e~L~G~~-- 539 (789)
T 3ppg_A 465 TTTIGSFPQT---KDIRINRNKFAKGQITAEEYEAFINKEIETVVRFQEEIGLDVLVHGEPERNDMVQYFGEQLNGFA-- 539 (789)
T ss_dssp BBCCSCCCCC---HHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHTCSBBCCCCTTCSCTTHHHHTTSEEEE--
T ss_pred eccccCcCCC---HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeCCCccchhHHHHHHHhCCCee--
Confidence 3677779999 99999999999999999999999999999999999999999999999999999999887776651
Q ss_pred ccCCCCccccchhhhhccCCCCCCccccceecccCceeecceecCCCccccCCchhHHHHHHHHHc-CCCCceEeehHHH
Q 003819 82 YSWNGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHYIVPELGPDVNFSYASHKAVQEYKEAKAL-GMETVPVLVGPVS 160 (793)
Q Consensus 82 ~~~~~~~~~l~~yFa~arG~~~~~a~~mtKwFdtNYhY~vPe~~~~~~~~l~~~~~~~e~~~a~~~-g~~~K~vl~GP~T 160 (793)
+. .. +..++++++| |..|.+.|+ ++...+..+++|++++++ +.++|.+||||+|
T Consensus 540 ~~--------------~~--------g~vq~~g~r~-~~~p~i~G~--V~~~~p~~v~~~~~~qs~t~~pvK~~L~gP~t 594 (789)
T 3ppg_A 540 FT--------------TN--------GWVQSYGSRY-VRPPIIVGD--VSRPKAMTVKESVYAQSITSKPMKGMLTGPVT 594 (789)
T ss_dssp CC--------------SS--------CCEEEETTEE-ECCCEEEEE--EECCSCSSHHHHHHHHHTCSSCBEEEEECHHH
T ss_pred Ee--------------cC--------cceEecCCcc-ccCCeeecc--CCCCCCCcHHHHHHHHhhccCCCceeccchHh
Confidence 10 01 1234455543 667888884 555444459999999987 5689999999999
Q ss_pred HhhhccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEeeccccccCCCh---HH----HHHHHHHHHHHHhcc
Q 003819 161 YLLLSKPAKGVEKSFSLLSLIDKIIPVYKEVVAELKAAGATWIQFDEPTLVLDLDS---HK----LQAFSDAYSELQSSL 233 (793)
Q Consensus 161 ~l~ls~~~~~~~~~~~~~~ll~~L~~~Y~~~l~~L~~aG~~~VQiDEP~L~~d~~~---~~----~~~~~~~y~~l~~~~ 233 (793)
++.++... . +.++.+++.+|+.+|++++++|+++||++||||||+|...++. .+ .+.+.++++....+.
T Consensus 595 i~~~s~~r-~---~~~~ee~~~dlA~A~r~Ei~~L~~AG~r~IQiDEPal~e~l~~r~g~d~~~~l~~av~a~n~a~~g~ 670 (789)
T 3ppg_A 595 ILRWSFPR-D---DVSGKIQALQLGLALRDEVNDLEGAGITVIQVDEPAIREGLPLRAGKERSDYLNWAAQSFRVATSGV 670 (789)
T ss_dssp HHHTSBCC-S---SSCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECTTTGGGSCSSSSHHHHHHHHHHHHHHHHHHSSS
T ss_pred Hhhhhccc-c---CCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEcccchhhcccccccCCHHHHHHHHHHHHHHHHhcC
Confidence 99887642 2 3578999999999999999999999999999999999764431 22 344555666655554
Q ss_pred C-CCcEEEEeccCCCchhhHHHHhcCCCccEEEEEeccCCCChhhHhhhCC-CCCEEEEEEeeCCCCCCCCHHHHHHHHH
Q 003819 234 S-GLNVLIETYFADVPAETYKILTSLKGVTGFGFDLIRGTKTLDLIKTEFP-LGKYLFAGVVDGRNIWANDLASSLTTLQ 311 (793)
Q Consensus 234 ~-~~~i~l~tyfg~~~~~~~~~l~~lp~Vd~l~lD~~~~~~~l~~l~~~~p-~~k~l~lGvVdgrn~w~ed~~~i~~~i~ 311 (793)
+ ++.|.+|.|+|++ .. +.+.+++ ||+|+||| ..+.++++|.. ++ .++.|++||||++++.+|++++++++|+
T Consensus 671 p~d~~I~tHiC~Gnf-~~--~~I~~l~-aD~islE~-~~Rs~~e~L~~-~~~~~k~V~lGVvds~sp~vEs~EeV~~rI~ 744 (789)
T 3ppg_A 671 ENSTQIHSHFCYSDL-DP--NHIKALD-ADVVSIEF-SKKDDPNYIQE-FSEYPNHIGLGLFDIHSPRIPSKQEFVSRIE 744 (789)
T ss_dssp CTTSEEEEECC---C-CH--HHHHHHC-CSEEEEC----------CGG-GGGCCSEEEEC-------CCCCHHHHHHHHH
T ss_pred CCCcEEEEeccCCCC-Ch--hHHHhCC-CCEEEEec-CCCcchHHHHH-HHhcCCeEEeeeecCCCCCCCCHHHHHHHHH
Confidence 3 4688999999999 55 8888999 99999999 43334566654 54 3689999999999999999999999999
Q ss_pred HHhhhcCCCcEEEeCCCCCcccccccccccCCcHHHHhHHHHHHHHHHHHHHHHHHcc
Q 003819 312 DLAGTVGKDKVVVSTSCSLLHTAVDLENETKLDQEIKSWLAFAAQKVVEVNALAKALS 369 (793)
Q Consensus 312 ~~~~~v~~e~l~vspsCgL~hvP~~~~~E~~l~~~~~~~lafA~qKl~El~~l~~~l~ 369 (793)
++.+++|+++|||||||||...+++ -|.+||+.|+..|+.++
T Consensus 745 ~a~~~v~~erL~lsPdCGl~t~~~~----------------~a~akL~~mveaAk~lR 786 (789)
T 3ppg_A 745 EILKVYPASKFWVNPDCGLKTRGWP----------------EVKESLTNMVEAAKEFR 786 (789)
T ss_dssp HHTTTSCGGGEEECCSCC---CCHH----------------HHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCcccEEEeCCCCCCCCCHH----------------HHHHHHHHHHHHHHHHH
Confidence 9999999999999999999976654 49999999999998764
No 12
>2nq5_A 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; structural genomics, target 6426D, PSI; 1.90A {Streptococcus mutans} PDB: 3l7s_A 3l7r_A 3t0c_A
Probab=100.00 E-value=2.8e-41 Score=402.80 Aligned_cols=314 Identities=16% Similarity=0.137 Sum_probs=256.7
Q ss_pred ccccccccCCCc---HHHHHHHHHHHccchhhHHHHHHhhccccceeeeehhhhcccCCHHHHHHHHHHHHHHHHHHHHH
Q 003819 432 LPTTTIGSFPQT---MDLRRVRREFKAKKRVLLLFHILLLNFHHFQIVFHKLVFYFRISEDDYVKTIKEEINNVVKLQEE 508 (793)
Q Consensus 432 ~~tt~iGSfPr~---~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~i~~Q~~ 508 (793)
+.|+++-||||+ +|||+|+++||+|+ ||.+++.+..++++++.|+.|++
T Consensus 3 ~~~~~~lgyPRig~~relk~a~e~yw~g~----------------------------i~~~~L~~~~~~~r~~~~~~q~~ 54 (755)
T 2nq5_A 3 LTKVSSLGYPRLGENREWKKLIEAYWAGK----------------------------VSKNDLFAGAKELRLDFLKKQLN 54 (755)
T ss_dssp CCEEBCSCCCSSCTTCHHHHHHHHHHTTC----------------------------SCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccceecCCCCCCCHHHHHHHHHhhcCC----------------------------CCHHHHHHHHHHHHHHHHHHHHH
Confidence 345555589995 99999999999999 99999999999999999999999
Q ss_pred cCCCcccCCCCccchhH----------------------HHHHh-hccCceeeccceeeecCCcc-ccCcEEEc-cCCCC
Q 003819 509 LDIDVLVHGEPERNDMV----------------------EYFGE-QLSGFAFTVNGWVQSYGSRC-VKPPIIYG-DVSRP 563 (793)
Q Consensus 509 ~Gldvi~~Ge~~r~d~v----------------------~~f~e-~l~G~~~~~~g~v~~~~~~~-~~~P~i~g-~v~~~ 563 (793)
+|||+|++|+|++||+| .||.. +-.|... ..+|++||+||| |++|++.+ +++..
T Consensus 55 aGid~i~~gdfs~yD~vl~~~~~~~~~p~r~~~~~~~l~~yFa~aRG~~~~~-a~emtkwfdtNyhY~vPe~~~~~~~~~ 133 (755)
T 2nq5_A 55 AGLDLIPVGDFSLYDHILDLSVQFNIIPKRFAKEPIDIDLYFAIARGNKENV-ASSMKKWFNTNYHYIVPEWSKQRPKLN 133 (755)
T ss_dssp TTCSBEEESCCCSSCHHHHHHHHTTCCCGGGTTSCSSHHHHHHHHHCCSSSC-CCCEEECTTSSCEEECCBCCSCCCCCC
T ss_pred cCCCCcccCCccchHHHHHHHHHhCCCchhhccccccHHHHHHHHhCCCCCC-cccceeeccCCCceeeeeeeCceeeec
Confidence 99999999999999955 57763 2222122 568999999998 89999997 67777
Q ss_pred CCcchhHHHHHHhcCCCCceeeechHHHHhhcccccCCCChHHHHHHHHHHHHHHHHHHHHcCCcEEEEcCcccccCCCC
Q 003819 564 KAMTVFWSSMAQSMTKRPMKGMLTGPVTILNWSFVRNDQPRFETCYQIALAIKDEVEDLEKAGITVIQIDEAALREGLPL 643 (793)
Q Consensus 564 ~~~~~~~~~~aq~~t~kpvK~~LtGPvTll~~s~~~~~~~~~e~~~~lA~al~~ev~~L~~aGv~~IQIDEPal~~~l~l 643 (793)
.+..++++++|++..+.++|++|+||+|++.+++. .+ ..++++.+++.+|++++++|.++|+++||||||+|..+++
T Consensus 134 ~~~~l~~~~eA~~~~g~~vK~vl~GP~Tla~l~k~-~~-~~~dll~~L~~~y~~~l~~L~~~Ga~~VQiDEP~L~~dl~- 210 (755)
T 2nq5_A 134 NNRLLDLYLEAREVVGDKAKPVITGPITYVALSTG-VE-DFTAAVKSLLPLYKQVFTELVKAGASYIQVDEPIFVTDEG- 210 (755)
T ss_dssp CCHHHHHHHHHHHHHGGGEEEEEECHHHHHHTCBS-CS-CHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECGGGGSSGG-
T ss_pred CchHHHHHHHHHHhcCCCcEEEEccHHHHHHHhcC-Cc-HHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeCCcccCCCC-
Confidence 77789999999844568999999999999998875 22 4669999999999999999999999999999999998753
Q ss_pred CcccHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCchhHHHHHHcCCCcEEEEecCCCChhhHHHhhhcccCCCeEee
Q 003819 644 RKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDADVITIENSRSDEKLLSVFREGVKYRAGIGP 723 (793)
Q Consensus 644 ~~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~C~g~~~~i~~~l~~l~~D~isiE~~r~~~~~L~~~~~~~~~~~~i~~ 723 (793)
..+.+. +..+++.+.+.+. +.++++|+|+|++. +++.|.++++|+|++|..+...+.|+.+.+.++.++.+++
T Consensus 211 --~~~~~~---~~~ay~~l~~~~~-~~~v~lhtyfG~~~-~~~~l~~l~vd~l~lD~v~~~~~~l~~l~~~~~~~k~L~~ 283 (755)
T 2nq5_A 211 --KDYLQA---AKAVYAYFAKEVP-DAKFIFQTYFEGLI-DSQVLSQLPVDAFGLDFVYGLEENLEAIKTGAFKGKEIFA 283 (755)
T ss_dssp --GGGHHH---HHHHHHHHHHHST-TCEEEEECCSSCCT-THHHHTTSSCSEEEEESSSSHHHHHHHHHTTTTTTSEEEE
T ss_pred --HHHHHH---HHHHHHHHHhccc-CCcEEEEEeCCChH-HHHHHHhCCCCEEEEEecCCChhhHHHHHHhcCCCCEEEE
Confidence 223333 3344444433221 35799999999987 8999999999999999877543456666652445689999
Q ss_pred eeecCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEcCCCCCCCCChh----------------HHHHHHHHHHHHHHHHH
Q 003819 724 GVYDIHSPRIPSTEEIADRINKMLAVLESNILWVNPDCGLKTRKYS----------------EVKPALSNMVAAAKLLR 786 (793)
Q Consensus 724 GVvD~~s~~ves~eev~~~i~~al~~i~~~~l~vsPdCGL~t~~~~----------------~~~~kL~~mv~aa~~~r 786 (793)
||||++|+|.++++++.++++++++. .+++||+|+|||.+.+.+ -+.+||.-++..++.+.
T Consensus 284 GvVdgrniw~~d~e~v~~~l~~~~~~--~~~l~vsPsCsL~h~P~~l~~e~~~~~~~~~~~~fa~~k~~e~~~l~~~~~ 360 (755)
T 2nq5_A 284 GVIDGRNIWSSDFVKTSALLETIEEQ--SAALTIQPSCSLLHVPVTTKNETDLDPVLRNGLAFADEKLTEVKRLAEHLD 360 (755)
T ss_dssp EEECTTSCBCCCHHHHHHHHHHHHHT--SSEEEEEESSCGGGSCSCSTTCTTSCHHHHTTBCCHHHHHHHHHHHHHHHT
T ss_pred EeeCCcccCCCCHHHHHHHHHHHHhh--cCCEEEcCCCCcCCCCHHHhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999986 689999999999996543 24678888777777654
No 13
>2inf_A URO-D, UPD, uroporphyrinogen decarboxylase; (alpha-beta)8 barrel, eight parallel beta strands surrounded by eight alpha helices, lyase; 2.30A {Bacillus subtilis}
Probab=99.65 E-value=1.1e-15 Score=168.40 Aligned_cols=201 Identities=15% Similarity=0.081 Sum_probs=157.2
Q ss_pred hHHHHHHh-cCCCCceeeechHHHHhhccc--c--cCC--------CC---hHHHHHHHHHHHHHHHHHHHHcCCcEEEE
Q 003819 569 FWSSMAQS-MTKRPMKGMLTGPVTILNWSF--V--RND--------QP---RFETCYQIALAIKDEVEDLEKAGITVIQI 632 (793)
Q Consensus 569 ~~~~~aq~-~t~kpvK~~LtGPvTll~~s~--~--~~~--------~~---~~e~~~~lA~al~~ev~~L~~aGv~~IQI 632 (793)
+.++..++ +.+.|+++.+.||+|++.... . ++. .+ ..++++.+++++.+.++.+.++|+++|||
T Consensus 133 ea~~~l~~~~~~~~l~g~~~~P~tla~~l~~gg~s~~~~~~~~~~~~~Pe~~~~ll~~i~~~~~~~~~~~~~aGad~i~i 212 (359)
T 2inf_A 133 ETIKLLVNEQLNVPLIGFSGAPFTLASYMTEGGPSKNYNKTKAFMYSMPDAWNLLMSKLADMIIVYVKAQIKAGAKAIQI 212 (359)
T ss_dssp HHHHHHHHHTCSSCEEEEEECHHHHHHHHHHCSCCSSCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHhCCcceEEEcCcHHHHHHHHHcCCCcccHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 33444443 335799999999999986554 1 111 11 34688899999999999999999999999
Q ss_pred cCcccccCCCCCcccHHHHHHHHHHHHHHHhcCCCC-CCeEEEEeCCCCchhHHHHHHcCCCcEEEEecCCCChhhHHHh
Q 003819 633 DEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQD-TTQVHTHMCYSNFNDIIHSIMDMDADVITIENSRSDEKLLSVF 711 (793)
Q Consensus 633 DEPal~~~l~l~~~~~~~~l~~av~a~~~~~~~v~~-~~~I~lH~C~g~~~~i~~~l~~l~~D~isiE~~r~~~~~L~~~ 711 (793)
++| ++..+ +++.|.+++.+.++++++.++. .+.++.|+| |+ ..+++.+.++++|++++|... + ++.+
T Consensus 213 ~D~-~~~~l-----sp~~f~ef~~p~~~~i~~~i~~~g~~~i~~~~-G~-~~~l~~l~~~g~d~~~~d~~~-d---~~~~ 280 (359)
T 2inf_A 213 FDS-WVGAL-----NQADYRTYIKPVMNRIFSELAKENVPLIMFGV-GA-SHLAGDWHDLPLDVVGLDWRL-G---IDEA 280 (359)
T ss_dssp ECT-TGGGS-----CHHHHHHHTHHHHHHHHHHHGGGCSCEEEECT-TC-GGGHHHHHTSSCSEEECCTTS-C---HHHH
T ss_pred eCC-ccccC-----CHHHHHHHhHHHHHHHHHHHHHcCCcEEEEcC-Cc-HHHHHHHHHhCCCEEEeCCCC-C---HHHH
Confidence 999 44433 4678999999999999988863 355667766 77 789999999999999998643 3 3334
Q ss_pred hhcccCCCeEeeeeecCCCCCCCCHHHHHHHHHHHHhhcCC--CcEEEcCCCCCCCCChhHHHHHHHHHHHHHHHHHHH
Q 003819 712 REGVKYRAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLES--NILWVNPDCGLKTRKYSEVKPALSNMVAAAKLLRTQ 788 (793)
Q Consensus 712 ~~~~~~~~~i~~GVvD~~s~~ves~eev~~~i~~al~~i~~--~~l~vsPdCGL~t~~~~~~~~kL~~mv~aa~~~r~~ 788 (793)
++ . .++.+..|.+|. +....++|+|.++++++++. +. ...++||+||+..-++ .++|++|+++++.++..
T Consensus 281 ~~-~-g~~~~l~Gnldp-~~l~~t~e~I~~~v~~~l~~-~~~~~g~Il~~gcgi~~~~~---~enl~a~ve~v~~~~~~ 352 (359)
T 2inf_A 281 RS-K-GITKTVQGNLDP-SILLAPWEVIEQKTKEILDQ-GMESDGFIFNLGHGVFPDVS---PEVLKKLTAFVHEYSQN 352 (359)
T ss_dssp HH-T-TCCSEEECCBCG-GGGGSCHHHHHHHHHHHHHH-HTTSSCEEBCBSSCCCTTSC---HHHHHHHHHHHHHHHHH
T ss_pred HH-c-CCCEEEEecCCh-HHhcCCHHHHHHHHHHHHHh-CCCCCCeEEeCCCCCCCCcC---HHHHHHHHHHHHHhhhh
Confidence 44 3 245799999999 66688999999999999998 65 3799999999976444 89999999999999764
No 14
>1j93_A UROD, uroporphyrinogen decarboxylase; beta barrel, plastidial enzyme, crystallographic dimer, lyase; 2.30A {Nicotiana tabacum} SCOP: c.1.22.1
Probab=99.62 E-value=7.8e-16 Score=169.27 Aligned_cols=200 Identities=14% Similarity=0.106 Sum_probs=153.6
Q ss_pred hHHHHHHhcC--CCCceeeechHHHHhhcccc----cC----------CCC-hHHHHHHHHHHHHHHHHHHHHcCCcEEE
Q 003819 569 FWSSMAQSMT--KRPMKGMLTGPVTILNWSFV----RN----------DQP-RFETCYQIALAIKDEVEDLEKAGITVIQ 631 (793)
Q Consensus 569 ~~~~~aq~~t--~kpvK~~LtGPvTll~~s~~----~~----------~~~-~~e~~~~lA~al~~ev~~L~~aGv~~IQ 631 (793)
+.++.+++.. +.|+++.+.||+|++..... ++ +.+ ..++++.+++++.+.++.+.++|+++||
T Consensus 132 e~~~~l~~~~~~~~~~~g~~~~P~tla~~l~~g~~~~~~~~~~~~~~~~Pe~~~~ll~~l~~~~~~~~~~~~~aGad~iq 211 (353)
T 1j93_A 132 EALTILRKEVNNQAAVLGFVGAPFTLASYVVEGGSSKNFTKIKRLAFAEPKVLHALLQKFATSMAKYIRYQADSGAQAVQ 211 (353)
T ss_dssp HHHHHHHHHHTTSSEEEEEEECHHHHHHHHHHSBCCSSCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEE
T ss_pred HHHHHHHHHhCCCceEEEecChHHHHHHHHHcCCCcccHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEE
Confidence 4444454433 36899999999999965432 11 112 3468889999999999999999999999
Q ss_pred EcCcccccCCCCCcccHHHHHHHHHHHHHHHhcCCCC---CCeEEEEeCCCCchhHHHHHHcCCCcEEEEecCCCChhhH
Q 003819 632 IDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQD---TTQVHTHMCYSNFNDIIHSIMDMDADVITIENSRSDEKLL 708 (793)
Q Consensus 632 IDEPal~~~l~l~~~~~~~~l~~av~a~~~~~~~v~~---~~~I~lH~C~g~~~~i~~~l~~l~~D~isiE~~r~~~~~L 708 (793)
|++|. ...+ +++.|.+++.+.++++++.++. +.. .+|.|.|. ..+++.+.++++|++++|... +.+.
T Consensus 212 i~D~~-~~~l-----sp~~f~ef~~p~~~~i~~~i~~~~~~~~-~ih~c~g~-~~~l~~l~~~g~d~~~~d~~~-d~~~- 281 (353)
T 1j93_A 212 IFDSW-ATEL-----SPVDFEEFSLPYLKQIVDSVKLTHPNLP-LILYASGS-GGLLERLPLTGVDVVSLDWTV-DMAD- 281 (353)
T ss_dssp EECGG-GGGS-----CHHHHHHHTHHHHHHHHHHHHHHSTTCC-EEEECSSC-TTTGGGGGGGCCSEEECCTTS-CHHH-
T ss_pred EeCcc-cccC-----CHHHHHHHhHHHHHHHHHHHHHhCCCCC-EEEECCCh-HHHHHHHHhcCCCEEEeCCCC-CHHH-
Confidence 99994 4333 4678889999999998888752 344 47999655 578999999999999998643 3333
Q ss_pred HHhhhcccCCCeEeeeeecCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEcCCCCCCCCChhHHHHHHHHHHHHHHHH
Q 003819 709 SVFREGVKYRAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLESNILWVNPDCGLKTRKYSEVKPALSNMVAAAKLL 785 (793)
Q Consensus 709 ~~~~~~~~~~~~i~~GVvD~~s~~ves~eev~~~i~~al~~i~~~~l~vsPdCGL~t~~~~~~~~kL~~mv~aa~~~ 785 (793)
.++ .-.++.+..|.+|. +....++|+|.++++++++.++.+..++||+||+..-++ .++|++|+++++.+
T Consensus 282 --~~~-~~g~~~~l~Gnldp-~~l~~~~e~i~~~v~~~l~~~~~~g~I~~~g~gi~~~~~---~enl~a~ve~v~~~ 351 (353)
T 1j93_A 282 --GRR-RLGPNVAIQGNVDP-GVLFGSKEFITNRINDTVKKAGKGKHILNLGHGIKVGTP---EENFAHFFEIAKGL 351 (353)
T ss_dssp --HHH-HTCSSSEEECCBCG-GGGGSCHHHHHHHHHHHHHHHCSSSEEBCBSSCCCTTCC---HHHHHHHHHHHHTC
T ss_pred --HHH-HcCCCeEEEecCCH-HHHcCCHHHHHHHHHHHHHHhCCCCEEEeCCCCCCCCCC---HHHHHHHHHHHHHh
Confidence 332 11135699999999 566789999999999999998878999999999975444 89999999999763
No 15
>3cyv_A URO-D, UPD, uroporphyrinogen decarboxylase; alpha/beta barrel, cytoplasm, lyase, porphyrin biosynthesis; 2.80A {Shigella flexneri}
Probab=99.51 E-value=1.9e-13 Score=150.24 Aligned_cols=194 Identities=14% Similarity=0.085 Sum_probs=152.0
Q ss_pred CCCceeeechHHHHhhcccc----cC--------CCC---hHHHHHHHHHHHHHHHHHHHHcCCcEEEEcCcccccCCCC
Q 003819 579 KRPMKGMLTGPVTILNWSFV----RN--------DQP---RFETCYQIALAIKDEVEDLEKAGITVIQIDEAALREGLPL 643 (793)
Q Consensus 579 ~kpvK~~LtGPvTll~~s~~----~~--------~~~---~~e~~~~lA~al~~ev~~L~~aGv~~IQIDEPal~~~l~l 643 (793)
+.|+.|.+.||+|++.+... +. +.+ ..++++.+++.+.+.++.+.++|+++|||.+|... .+
T Consensus 138 ~~plig~~~~P~tla~~l~~g~~~~~~~~~~~~~~~~Pe~~~~ll~~l~~~~~~~~~~~~~aGad~i~i~d~~~~-~l-- 214 (354)
T 3cyv_A 138 EVPLIGFSGSPWTLATYMVEGGSSKAFTVIKKMMYADPQALHALLDKLAKSVTLYLNAQIKAGAQAVMIFDTWGG-VL-- 214 (354)
T ss_dssp SSCEEEEEECHHHHHHHHHHSSCCSSCHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECTTGG-GS--
T ss_pred CeeEEEeCCcHHHHHHHHhCCCCCccHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCccc-cC--
Confidence 46999999999999976441 11 122 33678889999999999999999999999998543 22
Q ss_pred CcccHHHHHHHHHHHHHHHhcCCCCC-----CeEEEEeCCCCchhHHHHHHcCCCcEEEEecCCCChhhHHHhhhcccCC
Q 003819 644 RKSEQDFYLKWAVHSFRITNCGVQDT-----TQVHTHMCYSNFNDIIHSIMDMDADVITIENSRSDEKLLSVFREGVKYR 718 (793)
Q Consensus 644 ~~~~~~~~l~~av~a~~~~~~~v~~~-----~~I~lH~C~g~~~~i~~~l~~l~~D~isiE~~r~~~~~L~~~~~~~~~~ 718 (793)
+++.|.+++.+.++++++.++.. .. .+|.|.|. ..+++.+.++++|++++|... +.+.++.. . .+
T Consensus 215 ---sp~~f~ef~~p~~k~i~~~i~~~~~~~~~~-ii~~~~g~-~~~l~~l~~~g~d~i~~d~~~-dl~~~~~~---~-g~ 284 (354)
T 3cyv_A 215 ---TGRDYQQFSLYYMHKIVDGLLRENDGRRVP-VTLFTKGG-GQWLEAMAETGCDALGLDWTT-DIADARRR---V-GN 284 (354)
T ss_dssp ---CHHHHHHHTHHHHHHHHHHSCSEETTEECC-EEEECTTT-TTTHHHHHTTSCSEEECCTTS-CHHHHHHH---H-TT
T ss_pred ---CHHHHHHHhHHHHHHHHHHHHHhcCCCCCC-EEEECCCH-HHHHHHHHhcCCCEEEeCCCC-CHHHHHHH---h-CC
Confidence 46889999999999999998732 33 67888555 789999999999999998543 33322221 1 23
Q ss_pred CeEeeeeecCCCCCCCCHHHHHHHHHHHHhhcCC-CcEEEcCCCCCCCCChhHHHHHHHHHHHHHHHHHHHH
Q 003819 719 AGIGPGVYDIHSPRIPSTEEIADRINKMLAVLES-NILWVNPDCGLKTRKYSEVKPALSNMVAAAKLLRTQL 789 (793)
Q Consensus 719 ~~i~~GVvD~~s~~ves~eev~~~i~~al~~i~~-~~l~vsPdCGL~t~~~~~~~~kL~~mv~aa~~~r~~~ 789 (793)
+.+..|.+|.. ....++|+|.+.++++++.++. ...++||+||+..-++ .+++++|+++++.+.+++
T Consensus 285 ~~~l~Gn~dp~-~l~~t~e~i~~~v~~~l~~~g~~~g~I~~~g~gi~~~~p---~env~a~v~~v~~~~~~~ 352 (354)
T 3cyv_A 285 KVALQGNMDPS-MLYAPPARIEEEVATILAGFGHGEGHVFNLGHGIHQDVP---PEHAGVFVEAVHRLSEQY 352 (354)
T ss_dssp TSEEECCBCGG-GGGSCHHHHHHHHHHHHTTTTTSSCEEBCBSSCCCTTSC---HHHHHHHHHHHHHHHGGG
T ss_pred CeEEEecCChH-HhCCCHHHHHHHHHHHHHHhCCCCCeEEecCCCCCCCCC---HHHHHHHHHHHHHHhHHh
Confidence 56899999984 4468999999999999998775 5899999999987665 799999999999987664
No 16
>1r3s_A URO-D, uroporphyrinogen decarboxylase, UPD; uroporphyrinogen decarboxylase coproporphyrinogen, X-RAY crystallography, lyase; HET: 1CP; 1.65A {Homo sapiens} SCOP: c.1.22.1 PDB: 1r3t_A* 1r3r_A 1r3q_A* 1r3y_A* 1uro_A 3gvq_A 3gvr_A 1r3v_A* 3gvv_A 3gvw_A 1jph_A 1r3w_A* 3gw3_A 1jpi_A 1jpk_A 3gw0_A 2q71_A* 2q6z_A*
Probab=99.49 E-value=4.6e-13 Score=147.99 Aligned_cols=194 Identities=16% Similarity=0.149 Sum_probs=151.8
Q ss_pred CCCceeeechHHHHhhccc--c--cC----------CC-ChHHHHHHHHHHHHHHHHHHHHcCCcEEEEcCcccccCCCC
Q 003819 579 KRPMKGMLTGPVTILNWSF--V--RN----------DQ-PRFETCYQIALAIKDEVEDLEKAGITVIQIDEAALREGLPL 643 (793)
Q Consensus 579 ~kpvK~~LtGPvTll~~s~--~--~~----------~~-~~~e~~~~lA~al~~ev~~L~~aGv~~IQIDEPal~~~l~l 643 (793)
+.|+.+.+.||+|++.... . ++ +. ...++++.+++.+.+.++.+.++|+++|||.++.- ..+
T Consensus 148 ~~plig~~~~P~tla~~l~egg~~~~~~~~~~~~~~~Pe~~~~ll~~l~~~~~~~~~~~i~aGad~i~i~D~~~-~~l-- 224 (367)
T 1r3s_A 148 RVPLIGFAGAPWTLMTYMVEGGGSSTMAQAKRWLYQRPQASHQLLRILTDALVPYLVGQVVAGAQALQLFESHA-GHL-- 224 (367)
T ss_dssp SSCEEEEEECHHHHHHHHHHSSCCSSCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEETTG-GGS--
T ss_pred CccEEEEcCcHHHHHHHHHcCCCcccHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCcc-ccC--
Confidence 4799999999999996543 1 11 11 12357788999999999999999999999999844 333
Q ss_pred CcccHHHHHHHHHHHHHHHhcCCC------C--CCeEEEEeCCCCchhHHHHHHcCCCcEEEEecCCCChhhHHHhhhcc
Q 003819 644 RKSEQDFYLKWAVHSFRITNCGVQ------D--TTQVHTHMCYSNFNDIIHSIMDMDADVITIENSRSDEKLLSVFREGV 715 (793)
Q Consensus 644 ~~~~~~~~l~~av~a~~~~~~~v~------~--~~~I~lH~C~g~~~~i~~~l~~l~~D~isiE~~r~~~~~L~~~~~~~ 715 (793)
+++.|.+++.+.++++++.++ + ...+++|+| |. ..+++.+.++++|++++|... +... .++ .
T Consensus 225 ---sp~~f~ef~~p~~k~i~~~i~~~~~~~g~~~~p~i~~~~-G~-~~~l~~l~~~g~d~i~~d~~~-dl~~---a~~-~ 294 (367)
T 1r3s_A 225 ---GPQLFNKFALPYIRDVAKQVKARLREAGLAPVPMIIFAK-DG-HFALEELAQAGYEVVGLDWTV-APKK---ARE-C 294 (367)
T ss_dssp ---CHHHHHHHTHHHHHHHHHHHHHHHHHTTCCCCCEEEEET-TC-GGGHHHHTTSSCSEEECCTTS-CHHH---HHH-H
T ss_pred ---CHHHHHHHhHHHHHHHHHHHhhhhccccCCCCCeEEEcC-Cc-HHHHHHHHhcCCCEEEeCCCC-CHHH---HHH-H
Confidence 467888888888888887775 1 367899988 55 789999999999999998543 3322 222 1
Q ss_pred cCCCeEeeeeecCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEcCCCCCCCCChhHHHHHHHHHHHHHHHHHHHH
Q 003819 716 KYRAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLESNILWVNPDCGLKTRKYSEVKPALSNMVAAAKLLRTQL 789 (793)
Q Consensus 716 ~~~~~i~~GVvD~~s~~ves~eev~~~i~~al~~i~~~~l~vsPdCGL~t~~~~~~~~kL~~mv~aa~~~r~~~ 789 (793)
-.++....|.+|. +....++|+|.+.++++++.++....++|++||+..-++ .+++++|+++++...+++
T Consensus 295 ~g~~~~l~Gnldp-~~L~gt~e~i~~~v~~~l~~~g~~g~I~~~ghgi~~~~p---~env~a~v~~v~~~~~~~ 364 (367)
T 1r3s_A 295 VGKTVTLQGNLDP-CALYASEEEIGQLVKQMLDDFGPHRYIANLGHGLYPDMD---PEHVGAFVDAVHKHSRLL 364 (367)
T ss_dssp HCSSSEEEEEECG-GGGGSCHHHHHHHHHHHHHHHCSSSEEEEESSCCCTTCC---HHHHHHHHHHHHHHHHHH
T ss_pred cCCCeEEEeCCCh-HHhcCCHHHHHHHHHHHHHHhCCCCeeecCCCCCCCCCC---HHHHHHHHHHHHHHHHHh
Confidence 1135688999998 555689999999999999987767899999999987666 799999999999998765
No 17
>2eja_A URO-D, UPD, uroporphyrinogen decarboxylase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.90A {Aquifex aeolicus}
Probab=99.43 E-value=8.5e-13 Score=144.17 Aligned_cols=190 Identities=17% Similarity=0.172 Sum_probs=148.5
Q ss_pred cCCCCceeeechHHHHhhcccc-c---CC--------CC---hHHHHHHHHHHHHHHHHHHHHcCCcEEEEcCcccccCC
Q 003819 577 MTKRPMKGMLTGPVTILNWSFV-R---ND--------QP---RFETCYQIALAIKDEVEDLEKAGITVIQIDEAALREGL 641 (793)
Q Consensus 577 ~t~kpvK~~LtGPvTll~~s~~-~---~~--------~~---~~e~~~~lA~al~~ev~~L~~aGv~~IQIDEPal~~~l 641 (793)
+.+.|+.+.+.||+|++..... . +. .+ ..++++.+++.+.+.++.+.++|+++|||.+|... .+
T Consensus 128 ~~~~plig~~~~P~tla~~l~egg~~~~~~~~~~~~~~~Pe~~~~ll~~i~~~~~~~~~~~~~aGad~i~i~d~~~~-~l 206 (338)
T 2eja_A 128 QDEVPVIGFAGAPFTLLSYLIEGGASKDFKSTKLFMWENPKEYKRLMDILTETVLAYLKEQIKAGADVVQIFDSWVN-NL 206 (338)
T ss_dssp CCSSCEEEEEECHHHHHHHHHHTSCCSSCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEETTGG-GS
T ss_pred hcCccEEEecchHHHHHHHHHcCCCCccHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCccc-cC
Confidence 3357999999999999876541 1 11 12 23688889999999999999999999999998544 22
Q ss_pred CCCcccHHHHHHHHHHHHHHHhcCCCC--CCeEEEEeCCCCchhHHHHHHcCCCcEEEEecCCCChhhHHHhhhcccCCC
Q 003819 642 PLRKSEQDFYLKWAVHSFRITNCGVQD--TTQVHTHMCYSNFNDIIHSIMDMDADVITIENSRSDEKLLSVFREGVKYRA 719 (793)
Q Consensus 642 ~l~~~~~~~~l~~av~a~~~~~~~v~~--~~~I~lH~C~g~~~~i~~~l~~l~~D~isiE~~r~~~~~L~~~~~~~~~~~ 719 (793)
+++.|.+++.+.++++++.++. +..++.|+| |+ ..+++.+.++++|++++|... + ++..++ .+ +
T Consensus 207 -----sp~~f~ef~~p~~k~i~~~i~~~~g~~~i~~~~-g~-~~~l~~l~~~g~d~~~~d~~~-d---l~~~~~--~~-~ 272 (338)
T 2eja_A 207 -----SLEDYGEYVYPYVNYLISELKDFSDTPVIYFFR-GS-SSFIDLAVDYRADALSVDWSV-D---IPELFK--IY-D 272 (338)
T ss_dssp -----CHHHHHHHTHHHHHHHHHHHHHHCCCCEEEEES-SH-HHHHHHHTTSCCSEEECCTTS-C---HHHHHH--HC-C
T ss_pred -----CHHHHHHHhHHHHHHHHHHHhhcCCCCEEEEcC-Cc-HHHHHHHHHcCCCEEEeCCCC-C---HHHHHH--hC-C
Confidence 4678888888888888877741 356788877 66 889999999999999998643 3 333333 13 5
Q ss_pred eEeeeeecCCCCCCCCHHHHHHHHHHHHhhcCC-CcEEEcCCCCCCCCChhHHHHHHHHHHHHHHHH
Q 003819 720 GIGPGVYDIHSPRIPSTEEIADRINKMLAVLES-NILWVNPDCGLKTRKYSEVKPALSNMVAAAKLL 785 (793)
Q Consensus 720 ~i~~GVvD~~s~~ves~eev~~~i~~al~~i~~-~~l~vsPdCGL~t~~~~~~~~kL~~mv~aa~~~ 785 (793)
....|.+|. +....++|+|.+.++++++.++. ...++||+||+..-++ .+++++|+++++..
T Consensus 273 ~~l~Gn~dp-~~l~gt~e~i~~~v~~~l~~~g~~~g~I~~~g~gi~~~~p---~en~~a~v~~v~~~ 335 (338)
T 2eja_A 273 KGFQGNLEP-AVLYASEEVIEEKTLGLLRRIPVKTRYVFNLGHGLAPDME---LEKVKYLVDLVKSF 335 (338)
T ss_dssp SEEECCBCG-GGGGSCHHHHHHHHHHHHTTCCCSSSEEBCBSSCCCTTSC---HHHHHHHHHHHHTC
T ss_pred eEEEECCCH-HHhcCCHHHHHHHHHHHHHHhCCCCCeEEeCCCCCCCCCC---HHHHHHHHHHHHHh
Confidence 789999998 55568999999999999998776 5899999999977666 79999999998764
No 18
>4ay7_A Methylcobalamin\: coenzyme M methyltransferase; TIM barrel; 1.80A {Methanosarcina mazei} PDB: 4ay8_A
Probab=99.33 E-value=3.5e-11 Score=131.95 Aligned_cols=190 Identities=17% Similarity=0.169 Sum_probs=145.2
Q ss_pred CCCceeeechHHHHhhccccc--------CCC-ChHHHHHHHHHHHHHHHHHHHHcCCcEEEEcCcccccCCCCCcccHH
Q 003819 579 KRPMKGMLTGPVTILNWSFVR--------NDQ-PRFETCYQIALAIKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQD 649 (793)
Q Consensus 579 ~kpvK~~LtGPvTll~~s~~~--------~~~-~~~e~~~~lA~al~~ev~~L~~aGv~~IQIDEPal~~~l~l~~~~~~ 649 (793)
+.|+-|.+.||+|++...... .+. ...++++.+++.+.+.++...++|+++|||-++.....+ -+++
T Consensus 147 ~~pligf~g~P~Tla~~l~~~~~~~~~~~~~pe~~~~ll~~i~~~~~~~~~~qi~aGad~i~i~D~~a~~~~----lsp~ 222 (348)
T 4ay7_A 147 DVPIVGGMEGPVTVASDLVSVKSFMKWSIKKTDLLEQALDIATEASIIYANAMVEAGADVIAIADPVASPDL----MSPD 222 (348)
T ss_dssp TSCEEEEEECHHHHHHHHHCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHTCSEEEEECGGGSTTT----SCHH
T ss_pred CeeEEEeccchHHHHHhcccchHHHHHHHHChHhHHHHHHHHHHHHHHHHHHHHhcCCCcceeecccccccc----CCHH
Confidence 479999999999998643321 111 234567778888888999999999999999998765321 2467
Q ss_pred HHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCchhHHHHHHcCCCcEEEEecCCCChhhHHHhhhcccCCCeEeeeeecCC
Q 003819 650 FYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDADVITIENSRSDEKLLSVFREGVKYRAGIGPGVYDIH 729 (793)
Q Consensus 650 ~~l~~av~a~~~~~~~v~~~~~I~lH~C~g~~~~i~~~l~~l~~D~isiE~~r~~~~~L~~~~~~~~~~~~i~~GVvD~~ 729 (793)
.|.+++.+.++++.+.++. ...+|+| |+...+++.+.++++|++++|....+.+..+..- .++....|.+|..
T Consensus 223 ~f~~f~~p~~k~i~~~~~~--~~iih~~-g~~~~~l~~~~~~g~d~i~~d~~~~~~~~~k~~~----g~~~~l~Gnldp~ 295 (348)
T 4ay7_A 223 SFRQFLKSRLQKFASSVNS--VTVLHIC-GNVNPILSDMADCGFEGLSVEEKIGSAKKGKEVI----GTRARLVGNVSSP 295 (348)
T ss_dssp HHHHHHHHHHHHHHHHSSS--EEEEECC-SCCHHHHHHHHTSCCSEEECCGGGCCHHHHHHHH----TTSSEEEEEECCC
T ss_pred HHHHHhhHHHHHHHhhccC--CcEEEec-CCcHHHHHHHHHhccccccccchhhHHHHHHHHh----CCCEEEEcCCCCh
Confidence 8899999999999999863 4578999 7888999999999999999995443333232211 1345677999875
Q ss_pred CC-CCCCHHHHHHHHHHHHhhcCCCcEEEcCCCCCCCCChhHHHHHHHHHHHHHHHH
Q 003819 730 SP-RIPSTEEIADRINKMLAVLESNILWVNPDCGLKTRKYSEVKPALSNMVAAAKLL 785 (793)
Q Consensus 730 s~-~ves~eev~~~i~~al~~i~~~~l~vsPdCGL~t~~~~~~~~kL~~mv~aa~~~ 785 (793)
.. .-.++|+|.+.++++++. ...++||+||+.+-++ .+++++|++|+++.
T Consensus 296 ~~l~~g~~e~i~~~v~~~l~~---~g~I~~~Ghgi~p~tp---~env~a~v~av~ey 346 (348)
T 4ay7_A 296 FTLLPGPVDKIKAEAKEALEG---GIDVLAPGCGIAPMTP---LENVKALVAARDEF 346 (348)
T ss_dssp CCCTTCCHHHHHHHHHHHHHT---TCSEEEESSSCCTTCC---HHHHHHHHHHHHHH
T ss_pred HhhcCCCHHHHHHHHHHHHhC---CCCEEeCCCccCCCCC---HHHHHHHHHHHHHh
Confidence 54 446999999999999883 3458999999988777 78999999999875
No 19
>4exq_A UPD, URO-D, uroporphyrinogen decarboxylase; ssgcid, NIH, SBRI, heme biosynthesis, structural GENO niaid; 1.65A {Burkholderia thailandensis}
Probab=99.31 E-value=2.6e-11 Score=134.02 Aligned_cols=193 Identities=11% Similarity=0.062 Sum_probs=149.1
Q ss_pred CCceeeechHHHHhhcccc----cCC--------C---ChHHHHHHHHHHHHHHHHHHHHcCCcEEEEcCcccccCCCCC
Q 003819 580 RPMKGMLTGPVTILNWSFV----RND--------Q---PRFETCYQIALAIKDEVEDLEKAGITVIQIDEAALREGLPLR 644 (793)
Q Consensus 580 kpvK~~LtGPvTll~~s~~----~~~--------~---~~~e~~~~lA~al~~ev~~L~~aGv~~IQIDEPal~~~l~l~ 644 (793)
.|+.|.+.||+|++..... ++. . ...++++.+++.+.+.++.+.++|++.|||-++. ...+
T Consensus 149 vpligf~gaP~Tla~~l~~g~~s~~~~~~~~~~~~~Pe~~~~ll~~i~~~~~~y~~~qi~aGad~i~ifDs~-~~~L--- 224 (368)
T 4exq_A 149 VPLIGFSGSPWTLACYMVEGGGSDDFRTVKSMAYARPDLMHRILDVNAQAVAAYLNAQIEAGAQAVMIFDTW-GGAL--- 224 (368)
T ss_dssp SCEEEEEECHHHHHHHHHHTBCCSSCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHTCSEEEEEETT-GGGS---
T ss_pred eeEEEeCCcHHHHHHHHHcCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCc-cccC---
Confidence 6999999999999875331 111 1 1246777888899999999999999999997764 4333
Q ss_pred cccHHHHHHHHHHHHHHHhcCCCC-----CCeEEEEeCCCCchhHHHHHHcCCCcEEEEecCCCChhhHH-HhhhcccCC
Q 003819 645 KSEQDFYLKWAVHSFRITNCGVQD-----TTQVHTHMCYSNFNDIIHSIMDMDADVITIENSRSDEKLLS-VFREGVKYR 718 (793)
Q Consensus 645 ~~~~~~~l~~av~a~~~~~~~v~~-----~~~I~lH~C~g~~~~i~~~l~~l~~D~isiE~~r~~~~~L~-~~~~~~~~~ 718 (793)
+++.|.+++.+.++++++.++. .+.++.|.| |. ..+++.+.++++|++++|... +....+ .+. +
T Consensus 225 --sp~~f~ef~~Py~k~i~~~l~~~~~g~~~pvi~f~~-g~-~~~l~~l~~~g~d~i~~d~~~-dl~~ak~~~g-----~ 294 (368)
T 4exq_A 225 --ADGAYQRFSLDYIRRVVAQLKREHDGARVPAIAFTK-GG-GLWLEDLAATGVDAVGLDWTV-NLGRARERVA-----G 294 (368)
T ss_dssp --CTTHHHHHTHHHHHHHHHTSCCEETTEECCEEEEET-TC-GGGHHHHHTSSCSEEECCTTS-CHHHHHHHHT-----T
T ss_pred --CHHHHHHHhHHHHHHHHHHHHHhcCCCCCcEEEEcC-Cc-HHHHHHHHHhCCCEEeeCCCC-CHHHHHHHhC-----C
Confidence 3578899999999999999874 255665666 54 678999999999999998544 333222 222 3
Q ss_pred CeEeeeeecCCCCCCCCHHHHHHHHHHHHhhcCC-CcEEEcCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHh
Q 003819 719 AGIGPGVYDIHSPRIPSTEEIADRINKMLAVLES-NILWVNPDCGLKTRKYSEVKPALSNMVAAAKLLRTQLA 790 (793)
Q Consensus 719 ~~i~~GVvD~~s~~ves~eev~~~i~~al~~i~~-~~l~vsPdCGL~t~~~~~~~~kL~~mv~aa~~~r~~~~ 790 (793)
+....|.+|... ...++|+|.+.++++++..+. ...++|++||+.+-++ .+++++|+++++.....+.
T Consensus 295 ~~~l~Gnldp~~-L~gt~e~I~~~v~~~l~~~g~~~g~I~n~Ghgi~p~tp---~Env~a~veav~~~~~~~~ 363 (368)
T 4exq_A 295 RVALQGNLDPTI-LFAPPEAIRAEARAVLDSYGNHPGHVFNLGHGISQFTP---PEHVAELVDEVHRHSRAIR 363 (368)
T ss_dssp SSEEEEEECGGG-GGSCHHHHHHHHHHHHHHHCSCSCEEEEESSCCCTTCC---HHHHHHHHHHHHHHHHHHC
T ss_pred CEEEEECCCHHH-hCCCHHHHHHHHHHHHHHhCCCCCEEEeCCCCCCCCcC---HHHHHHHHHHHHHhCHHhh
Confidence 567889999864 368999999999999998874 6799999999987666 7899999999999887653
No 20
>1j93_A UROD, uroporphyrinogen decarboxylase; beta barrel, plastidial enzyme, crystallographic dimer, lyase; 2.30A {Nicotiana tabacum} SCOP: c.1.22.1
Probab=99.07 E-value=2.4e-09 Score=117.43 Aligned_cols=187 Identities=11% Similarity=0.081 Sum_probs=134.1
Q ss_pred chhHHHHHHHHHc---CCCCceEeehHHHHhh-hcc--CCCCcC-----CCCCH---HHHHHHHHHHHHHHHHHHHHCCC
Q 003819 135 HKAVQEYKEAKAL---GMETVPVLVGPVSYLL-LSK--PAKGVE-----KSFSL---LSLIDKIIPVYKEVVAELKAAGA 200 (793)
Q Consensus 135 ~~~~~e~~~a~~~---g~~~K~vl~GP~T~l~-ls~--~~~~~~-----~~~~~---~~ll~~L~~~Y~~~l~~L~~aG~ 200 (793)
+.+++.++.+++. +.+++..+.||+|++. +-. ...++. -+.++ .++++.|++++.+.++.+.++||
T Consensus 128 ~~v~e~~~~l~~~~~~~~~~~g~~~~P~tla~~l~~g~~~~~~~~~~~~~~~~Pe~~~~ll~~l~~~~~~~~~~~~~aGa 207 (353)
T 1j93_A 128 PYVGEALTILRKEVNNQAAVLGFVGAPFTLASYVVEGGSSKNFTKIKRLAFAEPKVLHALLQKFATSMAKYIRYQADSGA 207 (353)
T ss_dssp HHHHHHHHHHHHHHTTSSEEEEEEECHHHHHHHHHHSBCCSSCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhCCCceEEEecChHHHHHHHHHcCCCcccHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3456777766643 3567888999999873 311 111110 01123 36999999999999999999999
Q ss_pred CEEEeeccccccCCChHHH-----HHHHHHHHHHHhccCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEEeccCCCCh
Q 003819 201 TWIQFDEPTLVLDLDSHKL-----QAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLIRGTKTL 275 (793)
Q Consensus 201 ~~VQiDEP~L~~d~~~~~~-----~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~lp~Vd~l~lD~~~~~~~l 275 (793)
+.|||+|| |+.-++.++. ..+++..+.+.+..++..+ +|.| ++. ...++.+.+++ +|++++|+.. ++
T Consensus 208 d~iqi~D~-~~~~lsp~~f~ef~~p~~~~i~~~i~~~~~~~~~-ih~c-~g~-~~~l~~l~~~g-~d~~~~d~~~---d~ 279 (353)
T 1j93_A 208 QAVQIFDS-WATELSPVDFEEFSLPYLKQIVDSVKLTHPNLPL-ILYA-SGS-GGLLERLPLTG-VDVVSLDWTV---DM 279 (353)
T ss_dssp SEEEEECG-GGGGSCHHHHHHHTHHHHHHHHHHHHHHSTTCCE-EEEC-SSC-TTTGGGGGGGC-CSEEECCTTS---CH
T ss_pred CEEEEeCc-ccccCCHHHHHHHhHHHHHHHHHHHHHhCCCCCE-EEEC-CCh-HHHHHHHHhcC-CCEEEeCCCC---CH
Confidence 99999999 5555665443 3334444444331112344 4667 444 56789999999 9999998743 67
Q ss_pred hhHhhhCCCCCEEEEEEeeCCCCCCCCHHHHHHHHHHHhhhcCCCcEEEeCCCCCc
Q 003819 276 DLIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVSTSCSLL 331 (793)
Q Consensus 276 ~~l~~~~p~~k~l~lGvVdgrn~w~ed~~~i~~~i~~~~~~v~~e~l~vspsCgL~ 331 (793)
+.+++.++ +|.+..|-||. ..-..+.+++.+.++++++.++..+.++||+||+.
T Consensus 280 ~~~~~~~g-~~~~l~Gnldp-~~l~~~~e~i~~~v~~~l~~~~~~g~I~~~g~gi~ 333 (353)
T 1j93_A 280 ADGRRRLG-PNVAIQGNVDP-GVLFGSKEFITNRINDTVKKAGKGKHILNLGHGIK 333 (353)
T ss_dssp HHHHHHTC-SSSEEECCBCG-GGGGSCHHHHHHHHHHHHHHHCSSSEEBCBSSCCC
T ss_pred HHHHHHcC-CCeEEEecCCH-HHHcCCHHHHHHHHHHHHHHhCCCCEEEeCCCCCC
Confidence 77776565 46789999999 67789999999999999998887789999999984
No 21
>2inf_A URO-D, UPD, uroporphyrinogen decarboxylase; (alpha-beta)8 barrel, eight parallel beta strands surrounded by eight alpha helices, lyase; 2.30A {Bacillus subtilis}
Probab=99.03 E-value=7.3e-09 Score=113.96 Aligned_cols=183 Identities=14% Similarity=0.113 Sum_probs=133.0
Q ss_pred chhHHHHHHHHHc--CCCCceEeehHHHHhh-hc--cCCCCcC-----CCCCH---HHHHHHHHHHHHHHHHHHHHCCCC
Q 003819 135 HKAVQEYKEAKAL--GMETVPVLVGPVSYLL-LS--KPAKGVE-----KSFSL---LSLIDKIIPVYKEVVAELKAAGAT 201 (793)
Q Consensus 135 ~~~~~e~~~a~~~--g~~~K~vl~GP~T~l~-ls--~~~~~~~-----~~~~~---~~ll~~L~~~Y~~~l~~L~~aG~~ 201 (793)
...++.++.+++. +.+++..+.||+|++. +- ..++++. -+.++ .++++.|++++.+.++.+.++||+
T Consensus 129 ~~~~ea~~~l~~~~~~~~l~g~~~~P~tla~~l~~gg~s~~~~~~~~~~~~~Pe~~~~ll~~i~~~~~~~~~~~~~aGad 208 (359)
T 2inf_A 129 PYVLETIKLLVNEQLNVPLIGFSGAPFTLASYMTEGGPSKNYNKTKAFMYSMPDAWNLLMSKLADMIIVYVKAQIKAGAK 208 (359)
T ss_dssp HHHHHHHHHHHHHTCSSCEEEEEECHHHHHHHHHHCSCCSSCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHhCCcceEEEcCcHHHHHHHHHcCCCcccHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3456666666643 4677889999999873 32 2111110 01133 369999999999999999999999
Q ss_pred EEEeeccccccCCChHHHH-----HHHHHHHHHHhccCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEEeccCCCChh
Q 003819 202 WIQFDEPTLVLDLDSHKLQ-----AFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLIRGTKTLD 276 (793)
Q Consensus 202 ~VQiDEP~L~~d~~~~~~~-----~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~lp~Vd~l~lD~~~~~~~l~ 276 (793)
.|||+|| |+.-++.++.+ .+++..+.+.+. +..+++++| |+ ...++.+.+++ +|++++|+.. +++
T Consensus 209 ~i~i~D~-~~~~lsp~~f~ef~~p~~~~i~~~i~~~--g~~~i~~~~-G~--~~~l~~l~~~g-~d~~~~d~~~---d~~ 278 (359)
T 2inf_A 209 AIQIFDS-WVGALNQADYRTYIKPVMNRIFSELAKE--NVPLIMFGV-GA--SHLAGDWHDLP-LDVVGLDWRL---GID 278 (359)
T ss_dssp EEEEECT-TGGGSCHHHHHHHTHHHHHHHHHHHGGG--CSCEEEECT-TC--GGGHHHHHTSS-CSEEECCTTS---CHH
T ss_pred EEEEeCC-ccccCCHHHHHHHhHHHHHHHHHHHHHc--CCcEEEEcC-Cc--HHHHHHHHHhC-CCEEEeCCCC---CHH
Confidence 9999999 66666655432 333444444321 345666655 54 45899999999 9999998743 577
Q ss_pred hHhhhCCCCCEEEEEEeeCCCCCCCCHHHHHHHHHHHhhhcCC--CcEEEeCCCCCc
Q 003819 277 LIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGK--DKVVVSTSCSLL 331 (793)
Q Consensus 277 ~l~~~~p~~k~l~lGvVdgrn~w~ed~~~i~~~i~~~~~~v~~--e~l~vspsCgL~ 331 (793)
.+++ . .+|.++.|-||. .....+.+++.+.++++++. +. .+.+++|+||+.
T Consensus 279 ~~~~-~-g~~~~l~Gnldp-~~l~~t~e~I~~~v~~~l~~-~~~~~g~Il~~gcgi~ 331 (359)
T 2inf_A 279 EARS-K-GITKTVQGNLDP-SILLAPWEVIEQKTKEILDQ-GMESDGFIFNLGHGVF 331 (359)
T ss_dssp HHHH-T-TCCSEEECCBCG-GGGGSCHHHHHHHHHHHHHH-HTTSSCEEBCBSSCCC
T ss_pred HHHH-c-CCCEEEEecCCh-HHhcCCHHHHHHHHHHHHHh-CCCCCCeEEeCCCCCC
Confidence 7776 5 567899999999 67799999999999999987 65 379999999995
No 22
>3cyv_A URO-D, UPD, uroporphyrinogen decarboxylase; alpha/beta barrel, cytoplasm, lyase, porphyrin biosynthesis; 2.80A {Shigella flexneri}
Probab=98.41 E-value=6.5e-06 Score=90.10 Aligned_cols=186 Identities=11% Similarity=0.055 Sum_probs=128.3
Q ss_pred hhHHHHHHHHH-cC--CCCceEeehHHHHhh-hc--cCCCCcC-----CCCCH---HHHHHHHHHHHHHHHHHHHHCCCC
Q 003819 136 KAVQEYKEAKA-LG--METVPVLVGPVSYLL-LS--KPAKGVE-----KSFSL---LSLIDKIIPVYKEVVAELKAAGAT 201 (793)
Q Consensus 136 ~~~~e~~~a~~-~g--~~~K~vl~GP~T~l~-ls--~~~~~~~-----~~~~~---~~ll~~L~~~Y~~~l~~L~~aG~~ 201 (793)
..++..+.+++ ++ +++...+.||+|++. +- ....++. -+.++ .++++.++++..+.++.+.++|++
T Consensus 123 ~v~eai~~l~~~~~~~~plig~~~~P~tla~~l~~g~~~~~~~~~~~~~~~~Pe~~~~ll~~l~~~~~~~~~~~~~aGad 202 (354)
T 3cyv_A 123 YVMNAVRTIRHELKGEVPLIGFSGSPWTLATYMVEGGSSKAFTVIKKMMYADPQALHALLDKLAKSVTLYLNAQIKAGAQ 202 (354)
T ss_dssp HHHHHHHHHHHHTTTSSCEEEEEECHHHHHHHHHHSSCCSSCHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHhCCCeeEEEeCCcHHHHHHHHhCCCCCccHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 34555665553 33 567788899999874 32 1111110 01234 357899999999999999999999
Q ss_pred EEEeeccccccCCChHHH-HHHHHHHHHHHhccC------CCcEEEEeccCCCchhhHHHHhcCCCccEEEEEeccCCCC
Q 003819 202 WIQFDEPTLVLDLDSHKL-QAFSDAYSELQSSLS------GLNVLIETYFADVPAETYKILTSLKGVTGFGFDLIRGTKT 274 (793)
Q Consensus 202 ~VQiDEP~L~~d~~~~~~-~~~~~~y~~l~~~~~------~~~i~l~tyfg~~~~~~~~~l~~lp~Vd~l~lD~~~~~~~ 274 (793)
.|||.+|. +.-++.+.. +.+...++++.+... +.. +++.| ++. ...++.+.+++ +|++++|.. .+
T Consensus 203 ~i~i~d~~-~~~lsp~~f~ef~~p~~k~i~~~i~~~~~~~~~~-ii~~~-~g~-~~~l~~l~~~g-~d~i~~d~~---~d 274 (354)
T 3cyv_A 203 AVMIFDTW-GGVLTGRDYQQFSLYYMHKIVDGLLRENDGRRVP-VTLFT-KGG-GQWLEAMAETG-CDALGLDWT---TD 274 (354)
T ss_dssp EEEEECTT-GGGSCHHHHHHHTHHHHHHHHHHSCSEETTEECC-EEEEC-TTT-TTTHHHHHTTS-CSEEECCTT---SC
T ss_pred EEEEeCCc-cccCCHHHHHHHhHHHHHHHHHHHHHhcCCCCCC-EEEEC-CCH-HHHHHHHHhcC-CCEEEeCCC---CC
Confidence 99999974 445665443 333444444544321 134 34445 444 56899999999 999998753 45
Q ss_pred hhhHhhhCCCCCEEEEEEeeCCCCCCCCHHHHHHHHHHHhhhcCC-CcEEEeCCCCCc
Q 003819 275 LDLIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGK-DKVVVSTSCSLL 331 (793)
Q Consensus 275 l~~l~~~~p~~k~l~lGvVdgrn~w~ed~~~i~~~i~~~~~~v~~-e~l~vspsCgL~ 331 (793)
++.+++.+ .++....|-||. .....+.+++.+.++++++.++. ...+++++||+.
T Consensus 275 l~~~~~~~-g~~~~l~Gn~dp-~~l~~t~e~i~~~v~~~l~~~g~~~g~I~~~g~gi~ 330 (354)
T 3cyv_A 275 IADARRRV-GNKVALQGNMDP-SMLYAPPARIEEEVATILAGFGHGEGHVFNLGHGIH 330 (354)
T ss_dssp HHHHHHHH-TTTSEEECCBCG-GGGGSCHHHHHHHHHHHHTTTTTSSCEEBCBSSCCC
T ss_pred HHHHHHHh-CCCeEEEecCCh-HHhCCCHHHHHHHHHHHHHHhCCCCCeEEecCCCCC
Confidence 66666546 456788999998 55688999999999999988775 479999999983
No 23
>2eja_A URO-D, UPD, uroporphyrinogen decarboxylase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.90A {Aquifex aeolicus}
Probab=98.36 E-value=9e-06 Score=88.42 Aligned_cols=182 Identities=14% Similarity=0.085 Sum_probs=126.7
Q ss_pred hhHHHHHHHHH-c-CCCCceEeehHHHHhh-hc--cCCCCcC-----CCCCHH---HHHHHHHHHHHHHHHHHHHCCCCE
Q 003819 136 KAVQEYKEAKA-L-GMETVPVLVGPVSYLL-LS--KPAKGVE-----KSFSLL---SLIDKIIPVYKEVVAELKAAGATW 202 (793)
Q Consensus 136 ~~~~e~~~a~~-~-g~~~K~vl~GP~T~l~-ls--~~~~~~~-----~~~~~~---~ll~~L~~~Y~~~l~~L~~aG~~~ 202 (793)
..++..+.+++ + +.++...+.||+|++. +- ..+.++. -+.+++ ++++.++++..+.++...++|++.
T Consensus 116 ~v~eai~~l~~~~~~~plig~~~~P~tla~~l~egg~~~~~~~~~~~~~~~Pe~~~~ll~~i~~~~~~~~~~~~~aGad~ 195 (338)
T 2eja_A 116 YVYEIIKRVKEAQDEVPVIGFAGAPFTLLSYLIEGGASKDFKSTKLFMWENPKEYKRLMDILTETVLAYLKEQIKAGADV 195 (338)
T ss_dssp HHHHHHHHHHHHCCSSCEEEEEECHHHHHHHHHHTSCCSSCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTTCSE
T ss_pred HHHHHHHHHHHHhcCccEEEecchHHHHHHHHHcCCCCccHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE
Confidence 34555555553 3 3556677889999873 32 1111110 001333 589999999999999999999999
Q ss_pred EEeeccccccCCChHHH-----HHHHHHHHHHHhccCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEEeccCCCChhh
Q 003819 203 IQFDEPTLVLDLDSHKL-----QAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLIRGTKTLDL 277 (793)
Q Consensus 203 VQiDEP~L~~d~~~~~~-----~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~lp~Vd~l~lD~~~~~~~l~~ 277 (793)
||+.||. +.-++.+.. ..+++..+.+.+. ++..+++++| |+ ...++.+.+++ +|++++|+. -++..
T Consensus 196 i~i~d~~-~~~lsp~~f~ef~~p~~k~i~~~i~~~-~g~~~i~~~~-g~--~~~l~~l~~~g-~d~~~~d~~---~dl~~ 266 (338)
T 2eja_A 196 VQIFDSW-VNNLSLEDYGEYVYPYVNYLISELKDF-SDTPVIYFFR-GS--SSFIDLAVDYR-ADALSVDWS---VDIPE 266 (338)
T ss_dssp EEEEETT-GGGSCHHHHHHHTHHHHHHHHHHHHHH-CCCCEEEEES-SH--HHHHHHHTTSC-CSEEECCTT---SCHHH
T ss_pred EEEecCc-cccCCHHHHHHHhHHHHHHHHHHHhhc-CCCCEEEEcC-Cc--HHHHHHHHHcC-CCEEEeCCC---CCHHH
Confidence 9999984 434555433 2334444444332 2356777765 43 46789999999 999999873 35666
Q ss_pred HhhhCCCCCEEEEEEeeCCCCCCCCHHHHHHHHHHHhhhcCC-CcEEEeCCCCC
Q 003819 278 IKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGK-DKVVVSTSCSL 330 (793)
Q Consensus 278 l~~~~p~~k~l~lGvVdgrn~w~ed~~~i~~~i~~~~~~v~~-e~l~vspsCgL 330 (793)
+++.+ +....|-+|. ..-..+.+++.+.++++++.++. ...++++.||+
T Consensus 267 ~~~~~---~~~l~Gn~dp-~~l~gt~e~i~~~v~~~l~~~g~~~g~I~~~g~gi 316 (338)
T 2eja_A 267 LFKIY---DKGFQGNLEP-AVLYASEEVIEEKTLGLLRRIPVKTRYVFNLGHGL 316 (338)
T ss_dssp HHHHC---CSEEECCBCG-GGGGSCHHHHHHHHHHHHTTCCCSSSEEBCBSSCC
T ss_pred HHHhC---CeEEEECCCH-HHhcCCHHHHHHHHHHHHHHhCCCCCeEEeCCCCC
Confidence 66656 5678899998 66678999999999999988775 57999999998
No 24
>1r3s_A URO-D, uroporphyrinogen decarboxylase, UPD; uroporphyrinogen decarboxylase coproporphyrinogen, X-RAY crystallography, lyase; HET: 1CP; 1.65A {Homo sapiens} SCOP: c.1.22.1 PDB: 1r3t_A* 1r3r_A 1r3q_A* 1r3y_A* 1uro_A 3gvq_A 3gvr_A 1r3v_A* 3gvv_A 3gvw_A 1jph_A 1r3w_A* 3gw3_A 1jpi_A 1jpk_A 3gw0_A 2q71_A* 2q6z_A*
Probab=98.34 E-value=1.2e-05 Score=88.54 Aligned_cols=185 Identities=10% Similarity=0.062 Sum_probs=128.6
Q ss_pred hHHHHHHHHH-c--CCCCceEeehHHHHhh-hc--cCCCCcCC-----CCCH---HHHHHHHHHHHHHHHHHHHHCCCCE
Q 003819 137 AVQEYKEAKA-L--GMETVPVLVGPVSYLL-LS--KPAKGVEK-----SFSL---LSLIDKIIPVYKEVVAELKAAGATW 202 (793)
Q Consensus 137 ~~~e~~~a~~-~--g~~~K~vl~GP~T~l~-ls--~~~~~~~~-----~~~~---~~ll~~L~~~Y~~~l~~L~~aG~~~ 202 (793)
.++..+.+++ + ++++...+.||+|++. +- ...+++.. +.++ .++++.++++..+.++...++|++.
T Consensus 134 v~eai~~l~~~~~~~~plig~~~~P~tla~~l~egg~~~~~~~~~~~~~~~Pe~~~~ll~~l~~~~~~~~~~~i~aGad~ 213 (367)
T 1r3s_A 134 VFQAITLTRQRLAGRVPLIGFAGAPWTLMTYMVEGGGSSTMAQAKRWLYQRPQASHQLLRILTDALVPYLVGQVVAGAQA 213 (367)
T ss_dssp HHHHHHHHHHHHTTSSCEEEEEECHHHHHHHHHHSSCCSSCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTTCSE
T ss_pred HHHHHHHHHHHcCCCccEEEEcCcHHHHHHHHHcCCCcccHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE
Confidence 4455555543 3 3566777889999873 31 11111100 0133 3578899999999999999999999
Q ss_pred EEeeccccccCCChHHH-----HHHHHHHHHHH-hccC----CCcEEEEeccCCCchhhHHHHhcCCCccEEEEEeccCC
Q 003819 203 IQFDEPTLVLDLDSHKL-----QAFSDAYSELQ-SSLS----GLNVLIETYFADVPAETYKILTSLKGVTGFGFDLIRGT 272 (793)
Q Consensus 203 VQiDEP~L~~d~~~~~~-----~~~~~~y~~l~-~~~~----~~~i~l~tyfg~~~~~~~~~l~~lp~Vd~l~lD~~~~~ 272 (793)
|||.|| |+.-++.+.. ..+++..+.+. +..+ ...+++++| |+ ...++.+.+++ +|++++|+.
T Consensus 214 i~i~D~-~~~~lsp~~f~ef~~p~~k~i~~~i~~~~~~~g~~~~p~i~~~~-G~--~~~l~~l~~~g-~d~i~~d~~--- 285 (367)
T 1r3s_A 214 LQLFES-HAGHLGPQLFNKFALPYIRDVAKQVKARLREAGLAPVPMIIFAK-DG--HFALEELAQAG-YEVVGLDWT--- 285 (367)
T ss_dssp EEEEET-TGGGSCHHHHHHHTHHHHHHHHHHHHHHHHHTTCCCCCEEEEET-TC--GGGHHHHTTSS-CSEEECCTT---
T ss_pred EEEecC-ccccCCHHHHHHHhHHHHHHHHHHHhhhhccccCCCCCeEEEcC-Cc--HHHHHHHHhcC-CCEEEeCCC---
Confidence 999998 5555665543 33344444454 2100 256777776 43 45799999999 999999863
Q ss_pred CChhhHhhhCCCCCEEEEEEeeCCCCCCCCHHHHHHHHHHHhhhcCCCcEEEeCCCCCc
Q 003819 273 KTLDLIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVSTSCSLL 331 (793)
Q Consensus 273 ~~l~~l~~~~p~~k~l~lGvVdgrn~w~ed~~~i~~~i~~~~~~v~~e~l~vspsCgL~ 331 (793)
.++..+++.++ ++....|-+|. ..-..+.+++.+.++++++.++....++++.||+.
T Consensus 286 ~dl~~a~~~~g-~~~~l~Gnldp-~~L~gt~e~i~~~v~~~l~~~g~~g~I~~~ghgi~ 342 (367)
T 1r3s_A 286 VAPKKARECVG-KTVTLQGNLDP-CALYASEEEIGQLVKQMLDDFGPHRYIANLGHGLY 342 (367)
T ss_dssp SCHHHHHHHHC-SSSEEEEEECG-GGGGSCHHHHHHHHHHHHHHHCSSSEEEEESSCCC
T ss_pred CCHHHHHHHcC-CCeEEEeCCCh-HHhcCCHHHHHHHHHHHHHHhCCCCeeecCCCCCC
Confidence 35666665564 46788899999 66688999999999999988776679999999983
No 25
>4exq_A UPD, URO-D, uroporphyrinogen decarboxylase; ssgcid, NIH, SBRI, heme biosynthesis, structural GENO niaid; 1.65A {Burkholderia thailandensis}
Probab=97.80 E-value=0.00086 Score=73.80 Aligned_cols=172 Identities=12% Similarity=0.067 Sum_probs=117.7
Q ss_pred CCceEeehHHHHhh-hc--cCCCCcCC-----CCCH---HHHHHHHHHHHHHHHHHHHHCCCCEEEeeccccccCCChHH
Q 003819 150 ETVPVLVGPVSYLL-LS--KPAKGVEK-----SFSL---LSLIDKIIPVYKEVVAELKAAGATWIQFDEPTLVLDLDSHK 218 (793)
Q Consensus 150 ~~K~vl~GP~T~l~-ls--~~~~~~~~-----~~~~---~~ll~~L~~~Y~~~l~~L~~aG~~~VQiDEP~L~~d~~~~~ 218 (793)
+.-..+-||+|++. +- ..++++.. +.++ .++++.++++..+.++...++|++.|||-++ |+.-++.++
T Consensus 150 pligf~gaP~Tla~~l~~g~~s~~~~~~~~~~~~~Pe~~~~ll~~i~~~~~~y~~~qi~aGad~i~ifDs-~~~~Lsp~~ 228 (368)
T 4exq_A 150 PLIGFSGSPWTLACYMVEGGGSDDFRTVKSMAYARPDLMHRILDVNAQAVAAYLNAQIEAGAQAVMIFDT-WGGALADGA 228 (368)
T ss_dssp CEEEEEECHHHHHHHHHHTBCCSSCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHTCSEEEEEET-TGGGSCTTH
T ss_pred eEEEeCCcHHHHHHHHHcCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCC-ccccCCHHH
Confidence 44455679999874 31 11111100 0123 4588889999999999999999999999776 455555554
Q ss_pred HHHH-HHHHHHHHhccC------CCcEEEEeccCCCchhhHHHHhcCCCccEEEEEeccCCCChhhHhhhCCCCCEEEEE
Q 003819 219 LQAF-SDAYSELQSSLS------GLNVLIETYFADVPAETYKILTSLKGVTGFGFDLIRGTKTLDLIKTEFPLGKYLFAG 291 (793)
Q Consensus 219 ~~~~-~~~y~~l~~~~~------~~~i~l~tyfg~~~~~~~~~l~~lp~Vd~l~lD~~~~~~~l~~l~~~~p~~k~l~lG 291 (793)
.+.| ...++++.+... .+.++++++ | . ...++.+.+++ +|++++|.. .++...++.++ ++....|
T Consensus 229 f~ef~~Py~k~i~~~l~~~~~g~~~pvi~f~~-g-~-~~~l~~l~~~g-~d~i~~d~~---~dl~~ak~~~g-~~~~l~G 300 (368)
T 4exq_A 229 YQRFSLDYIRRVVAQLKREHDGARVPAIAFTK-G-G-GLWLEDLAATG-VDAVGLDWT---VNLGRARERVA-GRVALQG 300 (368)
T ss_dssp HHHHTHHHHHHHHHTSCCEETTEECCEEEEET-T-C-GGGHHHHHTSS-CSEEECCTT---SCHHHHHHHHT-TSSEEEE
T ss_pred HHHHhHHHHHHHHHHHHHhcCCCCCcEEEEcC-C-c-HHHHHHHHHhC-CCEEeeCCC---CCHHHHHHHhC-CCEEEEE
Confidence 4433 444455554431 145655554 3 3 56789999999 999999864 35666665564 4566779
Q ss_pred EeeCCCCCCCCHHHHHHHHHHHhhhcCC-CcEEEeCCCCCc
Q 003819 292 VVDGRNIWANDLASSLTTLQDLAGTVGK-DKVVVSTSCSLL 331 (793)
Q Consensus 292 vVdgrn~w~ed~~~i~~~i~~~~~~v~~-e~l~vspsCgL~ 331 (793)
=+|..- -..+.+++.+.++++++..+. ...++++.||+.
T Consensus 301 nldp~~-L~gt~e~I~~~v~~~l~~~g~~~g~I~n~Ghgi~ 340 (368)
T 4exq_A 301 NLDPTI-LFAPPEAIRAEARAVLDSYGNHPGHVFNLGHGIS 340 (368)
T ss_dssp EECGGG-GGSCHHHHHHHHHHHHHHHCSCSCEEEEESSCCC
T ss_pred CCCHHH-hCCCHHHHHHHHHHHHHHhCCCCCEEEeCCCCCC
Confidence 999864 478999999999999988774 569999999984
No 26
>4ay7_A Methylcobalamin\: coenzyme M methyltransferase; TIM barrel; 1.80A {Methanosarcina mazei} PDB: 4ay8_A
Probab=97.38 E-value=0.0053 Score=66.76 Aligned_cols=185 Identities=13% Similarity=0.145 Sum_probs=118.6
Q ss_pred hHHHHHHHHH-cC--CCCceEeehHHHHhhhccCCCCcC--CCCCH---HHHHHHHHHHHHHHHHHHHHCCCCEEEeecc
Q 003819 137 AVQEYKEAKA-LG--METVPVLVGPVSYLLLSKPAKGVE--KSFSL---LSLIDKIIPVYKEVVAELKAAGATWIQFDEP 208 (793)
Q Consensus 137 ~~~e~~~a~~-~g--~~~K~vl~GP~T~l~ls~~~~~~~--~~~~~---~~ll~~L~~~Y~~~l~~L~~aG~~~VQiDEP 208 (793)
.++..+..++ +| ++.-..+-||+|++......++.. -+.++ .++++.++++..+.++...++|++.|||-++
T Consensus 133 v~eai~~l~~~l~~~~pligf~g~P~Tla~~l~~~~~~~~~~~~~pe~~~~ll~~i~~~~~~~~~~qi~aGad~i~i~D~ 212 (348)
T 4ay7_A 133 VLEAIKIIREKVGPDVPIVGGMEGPVTVASDLVSVKSFMKWSIKKTDLLEQALDIATEASIIYANAMVEAGADVIAIADP 212 (348)
T ss_dssp HHHHHHHHHHHHCTTSCEEEEEECHHHHHHHHHCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHTCSEEEEECG
T ss_pred HHHHHHHHHHHhCCCeeEEEeccchHHHHHhcccchHHHHHHHHChHhHHHHHHHHHHHHHHHHHHHHhcCCCcceeecc
Confidence 3444555543 23 444556789999873211100000 00122 4578888888888999999999999999998
Q ss_pred ccccC-CChHHHH-HHHHHHHHHHhccCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEEeccCCCChhhHhhhCCCCC
Q 003819 209 TLVLD-LDSHKLQ-AFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLIRGTKTLDLIKTEFPLGK 286 (793)
Q Consensus 209 ~L~~d-~~~~~~~-~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~lp~Vd~l~lD~~~~~~~l~~l~~~~p~~k 286 (793)
.-..+ ++.+..+ -+...++++.+.... ..+++.| |+. ...++.+.+++ +|++++|..-+ +++..++.++ ++
T Consensus 213 ~a~~~~lsp~~f~~f~~p~~k~i~~~~~~-~~iih~~-g~~-~~~l~~~~~~g-~d~i~~d~~~~--~~~~~k~~~g-~~ 285 (348)
T 4ay7_A 213 VASPDLMSPDSFRQFLKSRLQKFASSVNS-VTVLHIC-GNV-NPILSDMADCG-FEGLSVEEKIG--SAKKGKEVIG-TR 285 (348)
T ss_dssp GGSTTTSCHHHHHHHHHHHHHHHHHHSSS-EEEEECC-SCC-HHHHHHHHTSC-CSEEECCGGGC--CHHHHHHHHT-TS
T ss_pred ccccccCCHHHHHHHhhHHHHHHHhhccC-CcEEEec-CCc-HHHHHHHHHhc-cccccccchhh--HHHHHHHHhC-CC
Confidence 75432 4554443 334445556555433 2356666 777 78899999999 99999986432 4555554454 45
Q ss_pred EEEEEEeeCCC-CCCCCHHHHHHHHHHHhhhcCCCcEEEeCCCCCc
Q 003819 287 YLFAGVVDGRN-IWANDLASSLTTLQDLAGTVGKDKVVVSTSCSLL 331 (793)
Q Consensus 287 ~l~lGvVdgrn-~w~ed~~~i~~~i~~~~~~v~~e~l~vspsCgL~ 331 (793)
....|=+|... .-..+.+++.+.++++.+. ..-++++.||+.
T Consensus 286 ~~l~Gnldp~~~l~~g~~e~i~~~v~~~l~~---~g~I~~~Ghgi~ 328 (348)
T 4ay7_A 286 ARLVGNVSSPFTLLPGPVDKIKAEAKEALEG---GIDVLAPGCGIA 328 (348)
T ss_dssp SEEEEEECCCCCCTTCCHHHHHHHHHHHHHT---TCSEEEESSSCC
T ss_pred EEEEcCCCChHhhcCCCHHHHHHHHHHHHhC---CCCEEeCCCccC
Confidence 55668777543 4456899999999998873 235789999963
No 27
>3cu2_A Ribulose-5-phosphate 3-epimerase; YP_718263.1, ribulose-PHOS epimerase family, structural genomics, joint center for STR genomics, JCSG; 1.91A {Haemophilus somnus}
Probab=92.97 E-value=0.52 Score=48.43 Aligned_cols=80 Identities=15% Similarity=0.256 Sum_probs=48.5
Q ss_pred HHHHHHHHHHcCCcEEEEcC------cccccCCCCCcccHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCchhHHHHH
Q 003819 615 IKDEVEDLEKAGITVIQIDE------AALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSI 688 (793)
Q Consensus 615 l~~ev~~L~~aGv~~IQIDE------Pal~~~l~l~~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~C~g~~~~i~~~l 688 (793)
+.++++.+.++|++++|+|. |.+..+. ..+.+++.. +..-+|+.-.+-...++.+
T Consensus 28 l~~~i~~~~~~gad~lhvDvmDG~fvpn~t~G~------------~~v~~lr~~-------~~~DvhLMv~~p~~~i~~~ 88 (237)
T 3cu2_A 28 LNEEVTTLLENQINVLHFDIADGQFSSLFTVGA------------IGIKYFPTH-------CFKDVHLMVRNQLEVAKAV 88 (237)
T ss_dssp HHHHHHHHHHTTCCEEEEEEEBSSSSSCBCBCT------------HHHHTSCTT-------SEEEEEEECSCHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEEEecCccccchhhhH------------HHHHHHhhh-------CCCCeEEEEECHHHHHHHH
Confidence 45678888899999999997 3333321 233333322 2225666534656778999
Q ss_pred HcCCCcEEEEe--cCCCChhhHHHhhh
Q 003819 689 MDMDADVITIE--NSRSDEKLLSVFRE 713 (793)
Q Consensus 689 ~~l~~D~isiE--~~r~~~~~L~~~~~ 713 (793)
.+.++|.+++- ......+.++.+++
T Consensus 89 ~~aGAd~itvH~ea~~~~~~~i~~i~~ 115 (237)
T 3cu2_A 89 VANGANLVTLQLEQYHDFALTIEWLAK 115 (237)
T ss_dssp HHTTCSEEEEETTCTTSHHHHHHHHTT
T ss_pred HHcCCCEEEEecCCcccHHHHHHHHHh
Confidence 99999996655 43322233444444
No 28
>1tx2_A DHPS, dihydropteroate synthase; folate biosynthesis, pterine, MA transferase; HET: 680; 1.83A {Bacillus anthracis} SCOP: c.1.21.1 PDB: 1tww_A* 1twz_A* 1tx0_A* 1tws_A* 3h21_A* 3h22_A* 3h23_A* 3h24_A* 3h26_A* 3h2a_A* 3h2c_A* 3h2e_A* 3h2f_A* 3h2m_A* 3h2n_A* 3h2o_A* 3tya_A* 3tyb_A* 3tyc_A* 3tyd_A* ...
Probab=92.14 E-value=1.9 Score=45.69 Aligned_cols=152 Identities=14% Similarity=0.180 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHcCCcEEEEcCcccccCCCCCcccHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCchhHHHHHHcCCC
Q 003819 614 AIKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDA 693 (793)
Q Consensus 614 al~~ev~~L~~aGv~~IQIDEPal~~~l~l~~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~C~g~~~~i~~~l~~l~~ 693 (793)
...+.++.+.+.|+++|-|---..+.+.+ ..+.++.++..++.++.+.+.. +..|.+.++.. ++++.-++.++
T Consensus 64 ~a~~~a~~~v~~GAdiIDIGgeStrPga~--~v~~~eE~~RvvpvI~~l~~~~--~vpiSIDT~~~---~V~~aAl~aGa 136 (297)
T 1tx2_A 64 AAVRHAKEMRDEGAHIIDIGGESTRPGFA--KVSVEEEIKRVVPMIQAVSKEV--KLPISIDTYKA---EVAKQAIEAGA 136 (297)
T ss_dssp HHHHHHHHHHHTTCSEEEEESCC----CC--CCCHHHHHHHHHHHHHHHHHHS--CSCEEEECSCH---HHHHHHHHHTC
T ss_pred HHHHHHHHHHHcCCCEEEECCCcCCCCCC--CCCHHHHHHHHHHHHHHHHhcC--CceEEEeCCCH---HHHHHHHHcCC
Confidence 34445677889999999998655554422 1234556666666665554432 24588888843 46777777799
Q ss_pred cEEEEecCC--CChhhHHHhhhcccCCCeEeeeeecCCCCCCCC-H----HHHHHHHHHHHhh-cCCCcEEEcCCCCCCC
Q 003819 694 DVITIENSR--SDEKLLSVFREGVKYRAGIGPGVYDIHSPRIPS-T----EEIADRINKMLAV-LESNILWVNPDCGLKT 765 (793)
Q Consensus 694 D~isiE~~r--~~~~~L~~~~~~~~~~~~i~~GVvD~~s~~ves-~----eev~~~i~~al~~-i~~~~l~vsPdCGL~t 765 (793)
+.| -+.+- .+.+.++..++ + +-.+.+--..+ .|.-++ + +.+.++++.+.+. ++.+++++.|..|| .
T Consensus 137 ~iI-Ndvsg~~~d~~m~~~aa~-~--g~~vVlmh~~G-~p~y~d~v~ev~~~l~~~i~~a~~~GI~~~~IilDPg~Gf-g 210 (297)
T 1tx2_A 137 HII-NDIWGAKAEPKIAEVAAH-Y--DVPIILMHNRD-NMNYRNLMADMIADLYDSIKIAKDAGVRDENIILDPGIGF-A 210 (297)
T ss_dssp CEE-EETTTTSSCTHHHHHHHH-H--TCCEEEECCCS-CCCCSSHHHHHHHHHHHHHHHHHHTTCCGGGEEEECCTTS-S
T ss_pred CEE-EECCCCCCCHHHHHHHHH-h--CCcEEEEeCCC-CCCcchHHHHHHHHHHHHHHHHHHcCCChhcEEEeCCCCc-C
Confidence 888 33222 13455666665 2 22222221111 122111 2 4455566666543 34569999999999 4
Q ss_pred CChhHHHHHHHHH
Q 003819 766 RKYSEVKPALSNM 778 (793)
Q Consensus 766 ~~~~~~~~kL~~m 778 (793)
-+.+..+.-|+++
T Consensus 211 k~~~~n~~ll~~l 223 (297)
T 1tx2_A 211 KTPEQNLEAMRNL 223 (297)
T ss_dssp CCHHHHHHHHHTG
T ss_pred CCHHHHHHHHHHH
Confidence 5555445555444
No 29
>1aj0_A DHPS, dihydropteroate synthase; antibiotic, resistance, transferase, folate, biosynthesis; HET: PH2 SAN; 2.00A {Escherichia coli} SCOP: c.1.21.1 PDB: 1aj2_A* 1ajz_A 3tyz_A* 3tyu_A* 3tzf_A* 3tzn_A
Probab=91.86 E-value=2.8 Score=44.08 Aligned_cols=153 Identities=13% Similarity=0.146 Sum_probs=85.7
Q ss_pred HHHHHHHHHHcCCcEEEEcCcccccCCCCCcccHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCchhHHHHHHcCCCc
Q 003819 615 IKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDAD 694 (793)
Q Consensus 615 l~~ev~~L~~aGv~~IQIDEPal~~~l~l~~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~C~g~~~~i~~~l~~l~~D 694 (793)
+.+.++.+.++|+++|=|---..+.+-. .....+.++..++.++.+.+.. +..|.++++.. ++++.-++.+++
T Consensus 40 a~~~a~~~v~~GAdiIDIGgestrPga~--~v~~~eE~~rv~pvi~~l~~~~--~~piSIDT~~~---~va~aAl~aGa~ 112 (282)
T 1aj0_A 40 AVKHANLMINAGATIIDVGGESTRPGAA--EVSVEEELQRVIPVVEAIAQRF--EVWISVDTSKP---EVIRESAKVGAH 112 (282)
T ss_dssp HHHHHHHHHHHTCSEEEEESSCCSTTCC--CCCHHHHHHHHHHHHHHHHHHC--CCEEEEECCCH---HHHHHHHHTTCC
T ss_pred HHHHHHHHHHCCCCEEEECCCcCCCCCC--cCCHHHHHHHHHHHHHHHHhhc--CCeEEEeCCCH---HHHHHHHHcCCC
Confidence 3445677888999999888655443311 1233455555555555554433 35688888753 577777777888
Q ss_pred EEEEecCCCChhhHHHhhhcccCCCeEeeeeecCCCC------CCCC-----HHHHHHHHHHHHhh-cCCCcEEEcCCCC
Q 003819 695 VITIENSRSDEKLLSVFREGVKYRAGIGPGVYDIHSP------RIPS-----TEEIADRINKMLAV-LESNILWVNPDCG 762 (793)
Q Consensus 695 ~isiE~~r~~~~~L~~~~~~~~~~~~i~~GVvD~~s~------~ves-----~eev~~~i~~al~~-i~~~~l~vsPdCG 762 (793)
.|.==..-.+.+.++..++ ++ -.+.+=-..+... .-.+ .+.+.++++++.+. ++++++++.|..|
T Consensus 113 iINdvsg~~d~~~~~~~a~-~~--~~vVlmh~~G~p~tm~~~~~y~d~~~ev~~~l~~~i~~a~~~Gi~~~~IilDPg~g 189 (282)
T 1aj0_A 113 IINDIRSLSEPGALEAAAE-TG--LPVCLMHMQGNPKTMQEAPKYDDVFAEVNRYFIEQIARCEQAGIAKEKLLLDPGFG 189 (282)
T ss_dssp EEEETTTTCSTTHHHHHHH-HT--CCEEEECCSSCTTCCSCCCCCSCHHHHHHHHHHHHHHHHHHTTCCGGGEEEECCTT
T ss_pred EEEECCCCCCHHHHHHHHH-hC--CeEEEEccCCCCccccccCccchHHHHHHHHHHHHHHHHHHcCCChhhEEEeCCCC
Confidence 7742111134455666665 22 2222211111100 0011 55666777777653 4456999999999
Q ss_pred CCCCChhHHHHHHHHH
Q 003819 763 LKTRKYSEVKPALSNM 778 (793)
Q Consensus 763 L~t~~~~~~~~kL~~m 778 (793)
|.. +.+..+.-|+++
T Consensus 190 f~k-~~~~n~~ll~~l 204 (282)
T 1aj0_A 190 FGK-NLSHNYSLLARL 204 (282)
T ss_dssp SSC-CHHHHHHHHHTG
T ss_pred ccc-CHHHHHHHHHHH
Confidence 944 555445555444
No 30
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=91.14 E-value=1.8 Score=44.59 Aligned_cols=95 Identities=17% Similarity=0.253 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHcCCcEEEEcCcc--cccCCCCCcccHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCchhHHHHHHcC
Q 003819 614 AIKDEVEDLEKAGITVIQIDEAA--LREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDM 691 (793)
Q Consensus 614 al~~ev~~L~~aGv~~IQIDEPa--l~~~l~l~~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~C~g~~~~i~~~l~~l 691 (793)
-+.++++.++++|++++++|=.- +...+. +-...+++++..+..+ .+-+|+-..+-.+.++.+.+.
T Consensus 41 ~L~~~i~~l~~~G~d~lHvDVmDg~FVpnit--------~G~~~v~~lr~~~p~~----~ldvHLmv~~p~~~i~~~~~a 108 (246)
T 3inp_A 41 RLGDDVKAVLAAGADNIHFDVMDNHYVPNLT--------FGPMVLKALRDYGITA----GMDVHLMVKPVDALIESFAKA 108 (246)
T ss_dssp GHHHHHHHHHHTTCCCEEEEEEBSSSSSCBC--------CCHHHHHHHHHHTCCS----CEEEEEECSSCHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCCEEEEEecCCCcCcchh--------cCHHHHHHHHHhCCCC----eEEEEEeeCCHHHHHHHHHHc
Confidence 35678889999999999999533 111111 1124677888775233 245555445667788999999
Q ss_pred CCcEEEEec--CCCChhhHHHhhhcccCCCeEee
Q 003819 692 DADVITIEN--SRSDEKLLSVFREGVKYRAGIGP 723 (793)
Q Consensus 692 ~~D~isiE~--~r~~~~~L~~~~~~~~~~~~i~~ 723 (793)
++|.+++=. ...-.+.++.+++ ++..+|+
T Consensus 109 GAd~itvH~Ea~~~~~~~i~~ir~---~G~k~Gv 139 (246)
T 3inp_A 109 GATSIVFHPEASEHIDRSLQLIKS---FGIQAGL 139 (246)
T ss_dssp TCSEEEECGGGCSCHHHHHHHHHT---TTSEEEE
T ss_pred CCCEEEEccccchhHHHHHHHHHH---cCCeEEE
Confidence 999999863 3222334566655 3445555
No 31
>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A*
Probab=91.06 E-value=0.95 Score=46.21 Aligned_cols=141 Identities=16% Similarity=0.198 Sum_probs=75.1
Q ss_pred HHHHHHHHHHcCCcEEEEcCcccccCCCCCcccHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCchhHHHHHHcCCCc
Q 003819 615 IKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDAD 694 (793)
Q Consensus 615 l~~ev~~L~~aGv~~IQIDEPal~~~l~l~~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~C~g~~~~i~~~l~~l~~D 694 (793)
+.++++.+ ++|++++++|-..-. ..|... +.-..+.+++..+ .. .+.+|+---|-+..++.+.+.++|
T Consensus 15 l~~~i~~~-~~gad~lHvDvmDG~-fvpn~t-----~G~~~v~~lr~~~-~~----~~dvhLmv~dp~~~i~~~~~aGAd 82 (231)
T 3ctl_A 15 FKEQIEFI-DSHADYFHIDIMDGH-FVPNLT-----LSPFFVSQVKKLA-TK----PLDCHLMVTRPQDYIAQLARAGAD 82 (231)
T ss_dssp HHHHHHHH-HTTCSCEEEEEECSS-SSSCCC-----BCHHHHHHHHTTC-CS----CEEEEEESSCGGGTHHHHHHHTCS
T ss_pred HHHHHHHH-HcCCCEEEEEEEeCc-cCccch-----hcHHHHHHHHhcc-CC----cEEEEEEecCHHHHHHHHHHcCCC
Confidence 56778888 999999999952111 011111 1123567776653 22 244454334666778999999999
Q ss_pred EEEEe--c-CCCChhhHHHhhhcccCCCeEeeeeecCCCCCCCCHHHHHHHHHHHHhhcCCCcEE---EcCCCCCCCCCh
Q 003819 695 VITIE--N-SRSDEKLLSVFREGVKYRAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLESNILW---VNPDCGLKTRKY 768 (793)
Q Consensus 695 ~isiE--~-~r~~~~~L~~~~~~~~~~~~i~~GVvD~~s~~ves~eev~~~i~~al~~i~~~~l~---vsPdCGL~t~~~ 768 (793)
.+++- . ...-.+.++.+++ .+..+|+-+ +..+| ++ +++..++. .+.+. |+|..|=... .
T Consensus 83 ~itvh~Ea~~~~~~~~i~~i~~---~G~k~gv~l-np~tp-~~-------~~~~~l~~--~D~VlvmsV~pGfggQ~f-~ 147 (231)
T 3ctl_A 83 FITLHPETINGQAFRLIDEIRR---HDMKVGLIL-NPETP-VE-------AMKYYIHK--ADKITVMTVDPGFAGQPF-I 147 (231)
T ss_dssp EEEECGGGCTTTHHHHHHHHHH---TTCEEEEEE-CTTCC-GG-------GGTTTGGG--CSEEEEESSCTTCSSCCC-C
T ss_pred EEEECcccCCccHHHHHHHHHH---cCCeEEEEE-ECCCc-HH-------HHHHHHhc--CCEEEEeeeccCcCCccc-c
Confidence 99875 3 3322334555555 355565544 33333 11 22222232 34554 5665553223 3
Q ss_pred hHHHHHHHHHHHHH
Q 003819 769 SEVKPALSNMVAAA 782 (793)
Q Consensus 769 ~~~~~kL~~mv~aa 782 (793)
+....|++.+.+..
T Consensus 148 ~~~l~kI~~lr~~~ 161 (231)
T 3ctl_A 148 PEMLDKLAELKAWR 161 (231)
T ss_dssp TTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 35566666555433
No 32
>1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2
Probab=89.52 E-value=0.89 Score=46.34 Aligned_cols=95 Identities=13% Similarity=0.202 Sum_probs=56.0
Q ss_pred HHHHHHHHHHcCCcEEEEcCc------ccccCCCCCcccHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCchhHHHHH
Q 003819 615 IKDEVEDLEKAGITVIQIDEA------ALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSI 688 (793)
Q Consensus 615 l~~ev~~L~~aGv~~IQIDEP------al~~~l~l~~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~C~g~~~~i~~~l 688 (793)
+.++++.++++|++++|+|-. .+..+ + ..+.+++..+. +..+.+|+--.|-...++.+
T Consensus 20 l~~~i~~~~~~g~d~iHvDvmDg~fvpn~t~G-------~-----~~v~~lr~~~p----~~~~dvhLmv~dp~~~i~~~ 83 (227)
T 1tqx_A 20 LAEETQRMESLGAEWIHLDVMDMHFVPNLSFG-------P-----PVINNLKKYTK----SIFFDVHLMVEYPEKYVPLL 83 (227)
T ss_dssp HHHHHHHHHHTTCSEEEEEEEBSSSSSCBCCC-------H-----HHHHHHGGGCS----SCEEEEEEESSCGGGGGGGC
T ss_pred HHHHHHHHHHcCCCEEEEEEEeCCcCcchhcC-------H-----HHHHHHHHhCC----CCcEEEEEEEcCHHHHHHHH
Confidence 556788889999999999963 33322 1 35666665432 23466776655655556666
Q ss_pred HcCCCcEE--EEecCC-CChhhHH---HhhhcccCCCeEeeeeecCCCC
Q 003819 689 MDMDADVI--TIENSR-SDEKLLS---VFREGVKYRAGIGPGVYDIHSP 731 (793)
Q Consensus 689 ~~l~~D~i--siE~~r-~~~~~L~---~~~~~~~~~~~i~~GVvD~~s~ 731 (793)
.+ +|.+ +.|... .....++ .+++ .+..+|+-+ +.++|
T Consensus 84 ~~--Ad~itvH~ea~~~~~~~~i~~~~~i~~---~G~k~gval-np~tp 126 (227)
T 1tqx_A 84 KT--SNQLTFHFEALNEDTERCIQLAKEIRD---NNLWCGISI-KPKTD 126 (227)
T ss_dssp TT--SSEEEEEGGGGTTCHHHHHHHHHHHHT---TTCEEEEEE-CTTSC
T ss_pred Hh--CCEEEEeecCCccCHHHHHHHHHHHHH---cCCeEEEEe-CCCCc
Confidence 66 6666 555554 2233456 5555 455666644 44433
No 33
>1eye_A DHPS 1, dihydropteroate synthase I; alpha-beta barrel, transferase; HET: PMM; 1.70A {Mycobacterium tuberculosis H37RV} SCOP: c.1.21.1
Probab=88.42 E-value=12 Score=39.13 Aligned_cols=153 Identities=10% Similarity=0.139 Sum_probs=81.9
Q ss_pred HHHHHHHHHHcCCcEEEEcCcccccCCCCCcccHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCchhHHHHHHcCCCc
Q 003819 615 IKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDAD 694 (793)
Q Consensus 615 l~~ev~~L~~aGv~~IQIDEPal~~~l~l~~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~C~g~~~~i~~~l~~l~~D 694 (793)
..+.++.+.+.|+++|=|---+.+.+.+ ..+.++.++..++.++.+.+. +..|.++++.. ++++.-++.+++
T Consensus 31 a~~~a~~~v~~GAdiIDIGgestrpga~--~v~~~eE~~Rv~pvi~~l~~~---~~piSIDT~~~---~va~aAl~aGa~ 102 (280)
T 1eye_A 31 AVKHGLAMAAAGAGIVDVGGESSRPGAT--RVDPAVETSRVIPVVKELAAQ---GITVSIDTMRA---DVARAALQNGAQ 102 (280)
T ss_dssp HHHHHHHHHHTTCSEEEEECC----------------HHHHHHHHHHHHHT---TCCEEEECSCH---HHHHHHHHTTCC
T ss_pred HHHHHHHHHHCCCCEEEECCccCCCCCC--CCCHHHHHHHHHHHHHHhhcC---CCEEEEeCCCH---HHHHHHHHcCCC
Confidence 3345677889999999888544333321 123345566666776665542 34588888753 577777778888
Q ss_pred EEEEecC-CCChhhHHHhhhcccCCCeEeeeeecCC--C-----CCCCC-----HHHHHHHHHHHHhh-cCCCcEEEcCC
Q 003819 695 VITIENS-RSDEKLLSVFREGVKYRAGIGPGVYDIH--S-----PRIPS-----TEEIADRINKMLAV-LESNILWVNPD 760 (793)
Q Consensus 695 ~isiE~~-r~~~~~L~~~~~~~~~~~~i~~GVvD~~--s-----~~ves-----~eev~~~i~~al~~-i~~~~l~vsPd 760 (793)
.|.==.. ..+.+.++..++ + +-.+++--..+. + +.-.+ .+.+.++++.+.+. ++.+++++-|.
T Consensus 103 iINdvsg~~~d~~m~~~~a~-~--~~~vVlmh~~G~p~tm~~~~~~y~dv~~~v~~~l~~~i~~a~~~Gi~~~~IilDPg 179 (280)
T 1eye_A 103 MVNDVSGGRADPAMGPLLAE-A--DVPWVLMHWRAVSADTPHVPVRYGNVVAEVRADLLASVADAVAAGVDPARLVLDPG 179 (280)
T ss_dssp EEEETTTTSSCTTHHHHHHH-H--TCCEEEECCCCSCTTCTTSCCCCSSHHHHHHHHHHHHHHHHHHTTCCGGGEEEECC
T ss_pred EEEECCCCCCCHHHHHHHHH-h--CCeEEEEcCCCCCcchhhcCcchhHHHHHHHHHHHHHHHHHHHcCCChhhEEEECC
Confidence 7742111 113455666665 2 222322222211 1 11122 45566677777653 44569999999
Q ss_pred CCCCCCChhHHHHHHHHHH
Q 003819 761 CGLKTRKYSEVKPALSNMV 779 (793)
Q Consensus 761 CGL~t~~~~~~~~kL~~mv 779 (793)
.||.- +.+..+.-|+++.
T Consensus 180 ~Gf~k-~~~~n~~ll~~l~ 197 (280)
T 1eye_A 180 LGFAK-TAQHNWAILHALP 197 (280)
T ss_dssp TTSSC-CHHHHHHHHHTHH
T ss_pred CCccc-CHHHHHHHHHHHH
Confidence 88864 4544445454443
No 34
>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A
Probab=87.87 E-value=4.3 Score=41.20 Aligned_cols=97 Identities=15% Similarity=0.115 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHcCCcEEEEcCcccccCCCCCcccHHHHHHHHHHHHHHHh-cCCCCCCeEEEEeCCCCchhHHHHHHcCC
Q 003819 614 AIKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITN-CGVQDTTQVHTHMCYSNFNDIIHSIMDMD 692 (793)
Q Consensus 614 al~~ev~~L~~aGv~~IQIDEPal~~~l~l~~~~~~~~l~~av~a~~~~~-~~v~~~~~I~lH~C~g~~~~i~~~l~~l~ 692 (793)
-+.++++.++++|++++++|=.--.. .|....+ ...+.+++..+ ..++ ..+|+++ .+..+.++.+.+.+
T Consensus 18 ~l~~~i~~l~~~g~d~~h~DVmDg~F-vpn~~~G-----~~~v~~ir~~~~~~~~--~dvhLmv--~~p~~~i~~~~~aG 87 (228)
T 3ovp_A 18 NLGAECLRMLDSGADYLHLDVMDGHF-VPNITFG-----HPVVESLRKQLGQDPF--FDMHMMV--SKPEQWVKPMAVAG 87 (228)
T ss_dssp GHHHHHHHHHHTTCSCEEEEEEBSSS-SSCBCBC-----HHHHHHHHHHHCSSSC--EEEEEEC--SCGGGGHHHHHHHT
T ss_pred hHHHHHHHHHHcCCCEEEEEecCCCc-CcccccC-----HHHHHHHHHhhCCCCc--EEEEEEe--CCHHHHHHHHHHcC
Confidence 35678889999999999998432111 1111111 24677787775 4443 3455554 46667889999999
Q ss_pred CcEEEEecC--CCChhhHHHhhhcccCCCeEee
Q 003819 693 ADVITIENS--RSDEKLLSVFREGVKYRAGIGP 723 (793)
Q Consensus 693 ~D~isiE~~--r~~~~~L~~~~~~~~~~~~i~~ 723 (793)
+|.+++-.. ..-.+.++.+++ .+..+|+
T Consensus 88 ad~itvH~Ea~~~~~~~i~~i~~---~G~k~gv 117 (228)
T 3ovp_A 88 ANQYTFHLEATENPGALIKDIRE---NGMKVGL 117 (228)
T ss_dssp CSEEEEEGGGCSCHHHHHHHHHH---TTCEEEE
T ss_pred CCEEEEccCCchhHHHHHHHHHH---cCCCEEE
Confidence 999998632 222234566655 3444544
No 35
>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2
Probab=87.83 E-value=1.2 Score=45.26 Aligned_cols=97 Identities=18% Similarity=0.256 Sum_probs=54.6
Q ss_pred HHHHHHHHHHcCCcEEEEcCcccccCCCCCcccHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCchhHHHHHHcCCCc
Q 003819 615 IKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDAD 694 (793)
Q Consensus 615 l~~ev~~L~~aGv~~IQIDEPal~~~l~l~~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~C~g~~~~i~~~l~~l~~D 694 (793)
+.++++.+.++|+++||+|...-. ..|.....+ ..+..++..+ +..+.+|+---|-+..++...+.++|
T Consensus 19 l~~~i~~~~~~Gad~ihldi~DG~-fvp~~~~g~-----~~v~~lr~~~-----~~~~~vhlmv~dp~~~i~~~~~aGad 87 (230)
T 1tqj_A 19 LGEEIKAVDEAGADWIHVDVMDGR-FVPNITIGP-----LIVDAIRPLT-----KKTLDVHLMIVEPEKYVEDFAKAGAD 87 (230)
T ss_dssp HHHHHHHHHHTTCSEEEEEEEBSS-SSSCBCBCH-----HHHHHHGGGC-----CSEEEEEEESSSGGGTHHHHHHHTCS
T ss_pred HHHHHHHHHHcCCCEEEEEEEecC-CCcchhhhH-----HHHHHHHhhc-----CCcEEEEEEccCHHHHHHHHHHcCCC
Confidence 456778888999999999983211 111111111 3445555433 13456665434545578889999999
Q ss_pred EEEEecC----CCChhhHHHhhhcccCCCeEeeee
Q 003819 695 VITIENS----RSDEKLLSVFREGVKYRAGIGPGV 725 (793)
Q Consensus 695 ~isiE~~----r~~~~~L~~~~~~~~~~~~i~~GV 725 (793)
++++=.. ....+.++.+++ .+..+|+-+
T Consensus 88 gv~vh~e~~~~~~~~~~~~~i~~---~g~~~gv~~ 119 (230)
T 1tqj_A 88 IISVHVEHNASPHLHRTLCQIRE---LGKKAGAVL 119 (230)
T ss_dssp EEEEECSTTTCTTHHHHHHHHHH---TTCEEEEEE
T ss_pred EEEECcccccchhHHHHHHHHHH---cCCcEEEEE
Confidence 9976543 222233444444 345555544
No 36
>3tr9_A Dihydropteroate synthase; biosynthesis of cofactors, prosthetic groups, and carriers, transferase; HET: PT1; 1.90A {Coxiella burnetii}
Probab=80.35 E-value=25 Score=37.40 Aligned_cols=153 Identities=11% Similarity=0.202 Sum_probs=80.3
Q ss_pred HHHHHHHHHHcCCcEEEEcCcccccCCCCC--cccHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCchhHHHHHHcCC
Q 003819 615 IKDEVEDLEKAGITVIQIDEAALREGLPLR--KSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMD 692 (793)
Q Consensus 615 l~~ev~~L~~aGv~~IQIDEPal~~~l~l~--~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~C~g~~~~i~~~l~~l~ 692 (793)
..+.++.+.++|+++|=|--.+-+.+-..+ ..+.++.++..++.++.+.+.. +..|.+-++.. ++++.-.+.+
T Consensus 51 al~~A~~~v~~GAdIIDIGgeSTrPga~~~~~~V~~~eE~~Rv~pvI~~l~~~~--~vpISIDT~~~---~Va~aAl~aG 125 (314)
T 3tr9_A 51 ALRTAEKMVDEGADILDIGGEATNPFVDIKTDSPSTQIELDRLLPVIDAIKKRF--PQLISVDTSRP---RVMREAVNTG 125 (314)
T ss_dssp HHHHHHHHHHTTCSEEEEECCCSCTTC-----CHHHHHHHHHHHHHHHHHHHHC--CSEEEEECSCH---HHHHHHHHHT
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCCCcccccCCCCHHHHHHHHHHHHHHHHhhC--CCeEEEeCCCH---HHHHHHHHcC
Confidence 344567788999999988754444332100 1234455555666655544332 35677777643 4666766678
Q ss_pred CcEEEEecCC-CChhhHHHhhhcccCCCeEeeeeecCCCCCC----C-------CHHHHHHHHHHHHhh-cCCCcEEEcC
Q 003819 693 ADVITIENSR-SDEKLLSVFREGVKYRAGIGPGVYDIHSPRI----P-------STEEIADRINKMLAV-LESNILWVNP 759 (793)
Q Consensus 693 ~D~isiE~~r-~~~~~L~~~~~~~~~~~~i~~GVvD~~s~~v----e-------s~eev~~~i~~al~~-i~~~~l~vsP 759 (793)
++.|. +.+- ...+.++..++ + +-.+.+--.. ..|.- + -.+.+.++++++.+. ++.+++++.|
T Consensus 126 a~iIN-DVsg~~~~~m~~v~a~-~--g~~vVlMh~~-G~P~tmq~~~~ydvv~ev~~~l~~~i~~a~~~GI~~~~IilDP 200 (314)
T 3tr9_A 126 ADMIN-DQRALQLDDALTTVSA-L--KTPVCLMHFP-SETRKPGSTTHFYFLQSVKKELQESIQRCKKAGISEDRIIIDP 200 (314)
T ss_dssp CCEEE-ETTTTCSTTHHHHHHH-H--TCCEEEECCC-CTTCCTTSSCHHHHHHHHHHHHHHHHHHHHHTTCCGGGEEEEC
T ss_pred CCEEE-ECCCCCchHHHHHHHH-h--CCeEEEECCC-CCCcccccccccchHHHHHHHHHHHHHHHHHcCCCHhHEEEeC
Confidence 88664 2221 13345566555 2 2222221111 11211 1 134455566666553 4456999999
Q ss_pred CCC---CCCCChhHHHHHHHHH
Q 003819 760 DCG---LKTRKYSEVKPALSNM 778 (793)
Q Consensus 760 dCG---L~t~~~~~~~~kL~~m 778 (793)
..| |. .+.+..+.-|+++
T Consensus 201 G~G~~~F~-Kt~~~n~~lL~~l 221 (314)
T 3tr9_A 201 GFGQGNYG-KNVSENFYLLNKL 221 (314)
T ss_dssp CCCSGGGC-CCHHHHHHHHHTT
T ss_pred CCCchhhc-CCHHHHHHHHHHH
Confidence 888 64 3444444444443
No 37
>2vp8_A Dihydropteroate synthase 2; RV1207 transferase, folate biosynthesis, antibiotic resistance; 2.64A {Mycobacterium tuberculosis}
Probab=79.66 E-value=21 Score=38.10 Aligned_cols=151 Identities=15% Similarity=0.144 Sum_probs=76.8
Q ss_pred HHHHHHHHHcCCcEEEEcCcccccCCCCCcccHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCchhHHHHHHcCCCcE
Q 003819 616 KDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDADV 695 (793)
Q Consensus 616 ~~ev~~L~~aGv~~IQIDEPal~~~l~l~~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~C~g~~~~i~~~l~~l~~D~ 695 (793)
.+.++.+.+.|+++|=|---+.+.+ +. .+.++.++..++.++.+.+..+ +..|.+-++.. ++++.-++.+++.
T Consensus 68 ~~~A~~~v~~GAdIIDIGgeSTrPG-~~--v~~~eEl~Rv~pvI~~l~~~~~-~vpISIDT~~~---~VaeaAl~aGa~i 140 (318)
T 2vp8_A 68 RDAVHRAVADGADVIDVGGVKAGPG-ER--VDVDTEITRLVPFIEWLRGAYP-DQLISVDTWRA---QVAKAACAAGADL 140 (318)
T ss_dssp HHHHHHHHHTTCSEEEEC-------------CHHHHHHHHHHHHHHHHHHST-TCEEEEECSCH---HHHHHHHHHTCCE
T ss_pred HHHHHHHHHCCCCEEEECCCcCCCC-CC--CCHHHHHHHHHHHHHHHHhhCC-CCeEEEeCCCH---HHHHHHHHhCCCE
Confidence 3456778899999998886444433 21 2345666666666665544332 24577766643 5677777778886
Q ss_pred EEEecCC-CChhhHHHhhhcccCCCeEeeeeecCCCCC----CCC------------HHHHHHHHHHHHhh-cCCCcEEE
Q 003819 696 ITIENSR-SDEKLLSVFREGVKYRAGIGPGVYDIHSPR----IPS------------TEEIADRINKMLAV-LESNILWV 757 (793)
Q Consensus 696 isiE~~r-~~~~~L~~~~~~~~~~~~i~~GVvD~~s~~----ves------------~eev~~~i~~al~~-i~~~~l~v 757 (793)
|. +.+- .+.+.++..++ + +-.+.+--..+..|. .++ .+.+.++++++.+. ++.+++++
T Consensus 141 IN-DVsg~~d~~m~~vaa~-~--g~~vVlmh~~G~~p~tmq~~~~y~~~~~dv~~ev~~~l~~~i~~a~~aGI~~~~Iil 216 (318)
T 2vp8_A 141 IN-DTWGGVDPAMPEVAAE-F--GAGLVCAHTGGALPRTRPFRVSYGTTTRGVVDAVISQVTAAAERAVAAGVAREKVLI 216 (318)
T ss_dssp EE-ETTSSSSTTHHHHHHH-H--TCEEEEECC-------------CCSCHHHHHHHHHHHHHHHHHHHHHTTCCGGGEEE
T ss_pred EE-ECCCCCchHHHHHHHH-h--CCCEEEECCCCCCccccccccccccccccHHHHHHHHHHHHHHHHHHcCCChhhEEE
Confidence 63 3221 14455666565 2 222222111111011 011 13445556666553 34569999
Q ss_pred cCCCCCCCCChhHHHHHHHHH
Q 003819 758 NPDCGLKTRKYSEVKPALSNM 778 (793)
Q Consensus 758 sPdCGL~t~~~~~~~~kL~~m 778 (793)
.|..||.- +.+..+.-|+++
T Consensus 217 DPG~GF~K-t~~~nl~ll~~l 236 (318)
T 2vp8_A 217 DPAHDFGK-NTFHGLLLLRHV 236 (318)
T ss_dssp ETTTTCCT-TSHHHHHHHHTH
T ss_pred cCCCCccc-CHHHHHHHHHHH
Confidence 99999954 443334444443
No 38
>3nl6_A Thiamine biosynthetic bifunctional enzyme; thiamin biosynthesis, eukaryoyes, transferase; HET: TPS ACP; 2.61A {Candida glabrata} PDB: 3nl2_A* 3nl5_A* 3nl3_A* 3nm3_A* 3nm1_A*
Probab=79.40 E-value=2.9 Score=47.96 Aligned_cols=108 Identities=14% Similarity=0.048 Sum_probs=63.2
Q ss_pred HHHHHHHHCCCCEEEeeccccccCCChHHHHHHHHHHHHHHhccCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEEec
Q 003819 190 EVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLI 269 (793)
Q Consensus 190 ~~l~~L~~aG~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~lp~Vd~l~lD~~ 269 (793)
+.++++.+.|+++||+.|+-+.. .+...+.+....+.... +++++|+.+ + +....+. .||+||.-.
T Consensus 29 ~~ve~al~~Gv~~vQlR~K~~~~----~~~~~~a~~l~~l~~~~-~v~liIND~---~-----dlA~~~g-AdGVHLgq~ 94 (540)
T 3nl6_A 29 GQVEAGLQNGVTLVQIREKDADT----KFFIEEALQIKELCHAH-NVPLIINDR---I-----DVAMAIG-ADGIHVGQD 94 (540)
T ss_dssp HHHHHHHHTTCSEEEECCSSSCT----THHHHHHHHHHHHHHHT-TCCEEECSC---S-----HHHHHTT-CSEEEECTT
T ss_pred HHHHHHHHCCCCEEEEecCCCCH----HHHHHHHHHHHHHHHhc-CCEEEEeCc---H-----HHHHHcC-CCEEEEChh
Confidence 44555668899999999987542 23333333333333322 467888743 2 3455678 999999754
Q ss_pred cCCCChhhHhhhCCCCCEEEEEEeeCCCCCCCCHHHHHHHHHHHhhhcC---CCcEEEeC
Q 003819 270 RGTKTLDLIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVG---KDKVVVST 326 (793)
Q Consensus 270 ~~~~~l~~l~~~~p~~k~l~lGvVdgrn~w~ed~~~i~~~i~~~~~~v~---~e~l~vsp 326 (793)
+- ....+++.++.++.|++.+ .+++++.+.. + .| .|-|.++|
T Consensus 95 dl--~~~~ar~~lg~~~iiG~S~--------ht~eea~~A~----~-~G~~~aDYv~~Gp 139 (540)
T 3nl6_A 95 DM--PIPMIRKLVGPDMVIGWSV--------GFPEEVDELS----K-MGPDMVDYIGVGT 139 (540)
T ss_dssp SS--CHHHHHHHHCTTSEEEEEE--------CSHHHHHHHH----H-TCC--CCEEEESC
T ss_pred hc--CHHHHHHHhCCCCEEEEEC--------CCHHHHHHHH----H-cCCCCCCEEEEcC
Confidence 32 2334444456777777666 2566654322 2 35 67777765
No 39
>2y5s_A DHPS, dihydropteroate synthase; transferase, folate biosynthesis; HET: 78H; 1.95A {Burkholderia cenocepacia} PDB: 2y5j_A*
Probab=79.22 E-value=57 Score=34.22 Aligned_cols=151 Identities=13% Similarity=0.174 Sum_probs=84.9
Q ss_pred HHHHHHHHHcCCcEEEEcCcccccCCCCCcccHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCchhHHHHHHcCCCcE
Q 003819 616 KDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDADV 695 (793)
Q Consensus 616 ~~ev~~L~~aGv~~IQIDEPal~~~l~l~~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~C~g~~~~i~~~l~~l~~D~ 695 (793)
.+.++.+.++|+++|=|---+.+.+.+ +.+.++.++..++.++.+.+. +..|.+-++.. ++++.-++.+++.
T Consensus 49 ~~~a~~~v~~GAdiIDIGgeSTrPga~--~v~~~eE~~Rv~pvi~~l~~~---~vpiSIDT~~~---~Va~aAl~aGa~i 120 (294)
T 2y5s_A 49 LRRAERMIAEGADLLDIGGESTRPGAP--PVPLDEELARVIPLVEALRPL---NVPLSIDTYKP---AVMRAALAAGADL 120 (294)
T ss_dssp HHHHHHHHHTTCSEEEEESSCCSTTCC--CCCHHHHHHHHHHHHHHHGGG---CSCEEEECCCH---HHHHHHHHHTCSE
T ss_pred HHHHHHHHHCCCCEEEECCCcCCCCCC--CCCHHHHHHHHHHHHHHHhhC---CCeEEEECCCH---HHHHHHHHcCCCE
Confidence 345677889999999988755554422 234566777778888776543 34577766643 4677766678877
Q ss_pred EEEecCC-CChhhHHHhhhcccCCCeEeeeeec----C---CCCCCCC-----HHHHHHHHHHHHhh-cCCCcEEEcCCC
Q 003819 696 ITIENSR-SDEKLLSVFREGVKYRAGIGPGVYD----I---HSPRIPS-----TEEIADRINKMLAV-LESNILWVNPDC 761 (793)
Q Consensus 696 isiE~~r-~~~~~L~~~~~~~~~~~~i~~GVvD----~---~s~~ves-----~eev~~~i~~al~~-i~~~~l~vsPdC 761 (793)
|. +.+- .+.+.++..++ ++-.+.+--.. + ..+.-++ .+.+.++++.+.+. ++++++++-|..
T Consensus 121 IN-dVsg~~d~~m~~~~a~---~~~~vVlmh~~G~p~tm~~~~~~y~dv~~ev~~~l~~~i~~a~~~Gi~~~~IilDPG~ 196 (294)
T 2y5s_A 121 IN-DIWGFRQPGAIDAVRD---GNSGLCAMHMLGEPQTMQVGEPDYGDVVTDVRDFLAARAQALRDAGVAAERICVDPGF 196 (294)
T ss_dssp EE-ETTTTCSTTHHHHHSS---SSCEEEEECCCEETTTTEECCCCCSSHHHHHHHHHHHHHHHHHHTTCCGGGEEEECCT
T ss_pred EE-ECCCCCchHHHHHHHH---hCCCEEEECCCCCCccccccCCccccHHHHHHHHHHHHHHHHHHcCCChhhEEEeCCC
Confidence 74 2211 13445565554 33333221111 1 1111223 34455666666553 445699999988
Q ss_pred CCCCCChhHHHHHHHHH
Q 003819 762 GLKTRKYSEVKPALSNM 778 (793)
Q Consensus 762 GL~t~~~~~~~~kL~~m 778 (793)
||.-...+..+.-|+++
T Consensus 197 Gf~kt~~~~n~~ll~~l 213 (294)
T 2y5s_A 197 GFGKAVVDDNYALLAAL 213 (294)
T ss_dssp TSSSCTTHHHHHHHHTG
T ss_pred cccccchHHHHHHHHHH
Confidence 88543314444444433
No 40
>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis}
Probab=79.07 E-value=27 Score=35.66 Aligned_cols=112 Identities=11% Similarity=0.053 Sum_probs=63.8
Q ss_pred HHHHHHHHCCCCEEEeeccccc-----cCCChHHHHHHHHHHHHHHhccCCCcEEEEeccCCCchhhHHHHhcCCCccEE
Q 003819 190 EVVAELKAAGATWIQFDEPTLV-----LDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGF 264 (793)
Q Consensus 190 ~~l~~L~~aG~~~VQiDEP~L~-----~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~lp~Vd~l 264 (793)
+.++++.+.|+++||+=|+-.. ..++..+...+.+....+.... ++.++|... ++....+. .||+
T Consensus 47 ~~~~~al~~Gv~~vqlR~K~~~~~~~~~~l~~~~~~~~a~~l~~l~~~~-~~~liInd~--------~~lA~~~g-AdGV 116 (243)
T 3o63_A 47 QFAEAALAGGVDIIQLRDKGSPGELRFGPLQARDELAACEILADAAHRY-GALFAVNDR--------ADIARAAG-ADVL 116 (243)
T ss_dssp HHHHHHHHTTCSEEEECCTTCHHHHHHCSCCHHHHHHHHHHHHHHHHHT-TCEEEEESC--------HHHHHHHT-CSEE
T ss_pred HHHHHHHHCCCCEEEEccCCCCccccccCCCHHHHHHHHHHHHHHHHhh-CCEEEEeCH--------HHHHHHhC-CCEE
Confidence 3444556789999999998732 1133344333334444443322 367787733 23345567 9999
Q ss_pred EEEeccCCCChhhHhhhCCCCCEEEEEEeeCCCCCCCCHHHHHHHHHHHhhhcCCCcEEEeC
Q 003819 265 GFDLIRGTKTLDLIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVST 326 (793)
Q Consensus 265 ~lD~~~~~~~l~~l~~~~p~~k~l~lGvVdgrn~w~ed~~~i~~~i~~~~~~v~~e~l~vsp 326 (793)
||.-..- ....+++.++.++.+++-+ .+++++.+ +.+ .|.|=|.++|
T Consensus 117 HLg~~dl--~~~~~r~~~~~~~~iG~S~--------ht~~Ea~~----A~~-~GaDyI~vgp 163 (243)
T 3o63_A 117 HLGQRDL--PVNVARQILAPDTLIGRST--------HDPDQVAA----AAA-GDADYFCVGP 163 (243)
T ss_dssp EECTTSS--CHHHHHHHSCTTCEEEEEE--------CSHHHHHH----HHH-SSCSEEEECC
T ss_pred EecCCcC--CHHHHHHhhCCCCEEEEeC--------CCHHHHHH----Hhh-CCCCEEEEcC
Confidence 9975432 2333444356677776654 55666433 322 4677788876
No 41
>4hb7_A Dihydropteroate synthase; transferase; 1.95A {Staphylococcus aureus} PDB: 1ad1_A 1ad4_A*
Probab=78.10 E-value=61 Score=33.64 Aligned_cols=147 Identities=15% Similarity=0.255 Sum_probs=86.9
Q ss_pred HHHHHHHcCCcEEEEcCcccccCCCCCcccHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCchhHHHHHHcCCCcEEE
Q 003819 618 EVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDADVIT 697 (793)
Q Consensus 618 ev~~L~~aGv~~IQIDEPal~~~l~l~~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~C~g~~~~i~~~l~~l~~D~is 697 (793)
.++.+.+.|+++|=|=--+.+.+-. ..+.++.++..++.++.+.+ .++.|.+-++.. ++...-.+.+++.|.
T Consensus 35 ~a~~m~~~GAdiIDIGgeSTRPga~--~vs~eeE~~Rv~pvi~~l~~---~~v~iSIDT~~~---~Va~~al~aGa~iIN 106 (270)
T 4hb7_A 35 RVKAMIDEGADIIDVGGVSTRPGHE--MVTLEEELNRVLPVVEAIVG---FDVKISVDTFRS---EVAEACLKLGVDMIN 106 (270)
T ss_dssp HHHHHHHTTCSEEEEESCCCSTTCC--CCCHHHHHHHHHHHHHHHTT---SSSEEEEECSCH---HHHHHHHHHTCCEEE
T ss_pred HHHHHHHCCCCEEEECCccCCCCCC--CCchHHHHHHHHHHHHHhhc---CCCeEEEECCCH---HHHHHHHHhccceec
Confidence 4667888999999886555554422 23456677777888776643 257788888865 477888889999876
Q ss_pred EecC--CCChhhHHHhhhcccCCCeEeeeeecCCCCCCCC-HHH----HHHHHHHHHhh-cCCCcEEEcCCCCCCCCChh
Q 003819 698 IENS--RSDEKLLSVFREGVKYRAGIGPGVYDIHSPRIPS-TEE----IADRINKMLAV-LESNILWVNPDCGLKTRKYS 769 (793)
Q Consensus 698 iE~~--r~~~~~L~~~~~~~~~~~~i~~GVvD~~s~~ves-~ee----v~~~i~~al~~-i~~~~l~vsPdCGL~t~~~~ 769 (793)
|.+ ..+.+.++...+ ++-.+.+=- ...+|.-++ +++ +.++++.+.+. ++.+++++-|+-||.- +.+
T Consensus 107 -DVs~g~~d~~m~~~va~---~~~~~vlMH-~~~~p~~~~vv~ev~~~l~~~i~~a~~aGI~~~~IilDPGiGFgK-t~~ 180 (270)
T 4hb7_A 107 -DQWAGLYDHRMFQIVAK---YDAEIILMH-NGNGNRDEPVVEEMLTSLLAQAHQAKIAGIPSNKIWLDPGIGFAK-TRN 180 (270)
T ss_dssp -ETTTTSSCTHHHHHHHH---TTCEEEEEC-CCSSCCSSCHHHHHHHHHHHHHHHHHHTTCCGGGEEEECCTTSSC-CHH
T ss_pred -cccccccchhHHHHHHH---cCCCeEEec-cccCCccccchhHHHHHHHHHHHHHHHcCCCCceEEEeCCCCccc-ccc
Confidence 322 224566777666 222222210 011232222 233 34555555543 4457999999999963 443
Q ss_pred HHHHHHHHH
Q 003819 770 EVKPALSNM 778 (793)
Q Consensus 770 ~~~~kL~~m 778 (793)
.-++-|+++
T Consensus 181 ~N~~ll~~l 189 (270)
T 4hb7_A 181 EEAEVMARL 189 (270)
T ss_dssp HHHHHHTCH
T ss_pred cHHHHHhhH
Confidence 334444333
No 42
>2yci_X 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; 1.78A {Carboxydothermus hydrogenoformans} PDB: 2ycj_A* 2yck_X*
Probab=74.87 E-value=50 Score=34.21 Aligned_cols=146 Identities=9% Similarity=0.109 Sum_probs=77.4
Q ss_pred HHHHHHHHHcCCcEEEEcCcccccCCCCCcccHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCchhHHHHHHcC--CC
Q 003819 616 KDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDM--DA 693 (793)
Q Consensus 616 ~~ev~~L~~aGv~~IQIDEPal~~~l~l~~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~C~g~~~~i~~~l~~l--~~ 693 (793)
.+.++.+.+.|+++|-|---.-. .+-.+.+.+++++++..+ + +.|.+-++.. ++++.-++. ++
T Consensus 37 ~~~a~~~v~~GAdiIDIg~~s~~-------~eE~~rv~~vi~~l~~~~-~----~pisIDT~~~---~v~~aal~a~~Ga 101 (271)
T 2yci_X 37 QEWARRQAEKGAHYLDVNTGPTA-------DDPVRVMEWLVKTIQEVV-D----LPCCLDSTNP---DAIEAGLKVHRGH 101 (271)
T ss_dssp HHHHHHHHHTTCSEEEEECCSCS-------SCHHHHHHHHHHHHHHHC-C----CCEEEECSCH---HHHHHHHHHCCSC
T ss_pred HHHHHHHHHCCCCEEEEcCCcCc-------hhHHHHHHHHHHHHHHhC-C----CeEEEeCCCH---HHHHHHHHhCCCC
Confidence 33456677899999988743311 112234555666665432 3 3477777743 466666666 77
Q ss_pred cEEE-EecCCCC--hhhHHHhhhcccCCCeEeeeeecCCCCCCCCHHHH----HHHHHHHHhh-cCCCcEEEcCCCCCCC
Q 003819 694 DVIT-IENSRSD--EKLLSVFREGVKYRAGIGPGVYDIHSPRIPSTEEI----ADRINKMLAV-LESNILWVNPDCGLKT 765 (793)
Q Consensus 694 D~is-iE~~r~~--~~~L~~~~~~~~~~~~i~~GVvD~~s~~ves~eev----~~~i~~al~~-i~~~~l~vsPdCGL~t 765 (793)
+.|. +-... + .+.+...++ ++-.+.+--.|.+. .-.+.+++ .++++.+.+. ++++++++.|.+|+-.
T Consensus 102 ~iINdvs~~~-d~~~~~~~~~a~---~~~~vv~m~~d~~G-~p~t~~~~~~~l~~~~~~a~~~Gi~~~~IilDPg~gfig 176 (271)
T 2yci_X 102 AMINSTSADQ-WKMDIFFPMAKK---YEAAIIGLTMNEKG-VPKDANDRSQLAMELVANADAHGIPMTELYIDPLILPVN 176 (271)
T ss_dssp CEEEEECSCH-HHHHHHHHHHHH---HTCEEEEESCBTTB-CCCSHHHHHHHHHHHHHHHHHTTCCGGGEEEECCCCCTT
T ss_pred CEEEECCCCc-cccHHHHHHHHH---cCCCEEEEecCCCC-CCCCHHHHHHHHHHHHHHHHHCCCCcccEEEecCCCccc
Confidence 7774 43221 2 234454454 23333332222111 11244444 4444555432 4456899999999944
Q ss_pred CChhHHHHHHHHHHHH
Q 003819 766 RKYSEVKPALSNMVAA 781 (793)
Q Consensus 766 ~~~~~~~~kL~~mv~a 781 (793)
-+.+....-|+++.+.
T Consensus 177 k~~~~~~~~l~~l~~~ 192 (271)
T 2yci_X 177 VAQEHAVEVLETIRQI 192 (271)
T ss_dssp TSTHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHH
Confidence 4555555556555443
No 43
>2vef_A Dihydropteroate synthase; antibiotic resistance, transferase, folate biosynthesis; 1.8A {Streptococcus pneumoniae} PDB: 2veg_A*
Probab=73.99 E-value=35 Score=36.18 Aligned_cols=91 Identities=18% Similarity=0.226 Sum_probs=51.1
Q ss_pred HHHHHHHHHcCCcEEEEcCcccccCCCCCcccHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCchhHHHHHHcCCCcE
Q 003819 616 KDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDADV 695 (793)
Q Consensus 616 ~~ev~~L~~aGv~~IQIDEPal~~~l~l~~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~C~g~~~~i~~~l~~l~~D~ 695 (793)
.+.++.+.++|+++|=|---+.+.+.+ ..+.++.++..++.++.+.+.. +..|.+-++.. ++++.-++.+++.
T Consensus 36 ~~~a~~~v~~GAdIIDIGgeSTrPGa~--~v~~~eE~~Rv~pvI~~l~~~~--~vpiSIDT~~~---~Va~aAl~aGa~i 108 (314)
T 2vef_A 36 LQQARKLIAEGASMLDIGGESTRPGSS--YVEIEEEIQRVVPVIKAIRKES--DVLISIDTWKS---QVAEAALAAGADL 108 (314)
T ss_dssp HHHHHHHHHTTCSEEEEECCC-----C--HHHHHHHHHHHHHHHHHHHHHC--CCEEEEECSCH---HHHHHHHHTTCCE
T ss_pred HHHHHHHHHCCCCEEEECCCcCCCCCC--CCCHHHHHHHHHHHHHHHHhhC--CceEEEeCCCH---HHHHHHHHcCCCE
Confidence 345678889999999888655443321 1233455666666655544332 24577766643 5777777789887
Q ss_pred EE-EecCCCChhhHHHhhh
Q 003819 696 IT-IENSRSDEKLLSVFRE 713 (793)
Q Consensus 696 is-iE~~r~~~~~L~~~~~ 713 (793)
|. +-.-..+.+.++..++
T Consensus 109 INDVsg~~~d~~m~~v~a~ 127 (314)
T 2vef_A 109 VNDITGLMGDEKMPHVVAE 127 (314)
T ss_dssp EEETTTTCSCTTHHHHHHH
T ss_pred EEECCCCCCChHHHHHHHH
Confidence 74 2111113345565555
No 44
>1ur4_A Galactanase; hydrolase, beta-1, glycoside hydrolase, substrate specificity, pectin, GH-A, family 53, plant cell WALL degradation; HET: B2G PGE; 2.2A {Bacillus licheniformis} SCOP: c.1.8.3 PDB: 1r8l_A* 1ur0_A* 2ccr_A* 2j74_A* 2gft_A*
Probab=73.06 E-value=1e+02 Score=33.72 Aligned_cols=148 Identities=11% Similarity=0.117 Sum_probs=86.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHcCCc--EEEEc-CcccccCCCCCcccHHHH---HHHHHHHHHHHhcCCCCCCeEEEEe
Q 003819 603 PRFETCYQIALAIKDEVEDLEKAGIT--VIQID-EAALREGLPLRKSEQDFY---LKWAVHSFRITNCGVQDTTQVHTHM 676 (793)
Q Consensus 603 ~~~e~~~~lA~al~~ev~~L~~aGv~--~IQID-EPal~~~l~l~~~~~~~~---l~~av~a~~~~~~~v~~~~~I~lH~ 676 (793)
+..++...++..-++-+..|.+.|+. +|||= |+....+ ....++.+ +..++.++|.+. +..+|.+|.
T Consensus 131 ~~~~l~~~~~~yt~~~l~~l~~~g~~~~~vqvGNEi~~g~~---~~~~~~~la~ll~ag~~aVR~v~----p~~~V~ih~ 203 (399)
T 1ur4_A 131 NFEDKKTALYQYTKQSLKAMKAAGIDIGMVQVGNETNGGLA---GETDWAKMSQLFNAGSQAVRETD----SNILVALHF 203 (399)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEESSSCSSCBT---TBCCHHHHHHHHHHHHHHHHHHC----TTSEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEccccccccC---CcccHHHHHHHHHHHHHHHHHhC----CCCeEEEEe
Confidence 55677778877777888888888864 67664 6655321 12345443 555566665553 346799999
Q ss_pred CCCC----chhHHHHHHc--CCCcEEEEecCCCChhhHHHhhhcccCCCeEeeeeecCCCCCCCCHHHHHHHHHHHHhhc
Q 003819 677 CYSN----FNDIIHSIMD--MDADVITIENSRSDEKLLSVFREGVKYRAGIGPGVYDIHSPRIPSTEEIADRINKMLAVL 750 (793)
Q Consensus 677 C~g~----~~~i~~~l~~--l~~D~isiE~~r~~~~~L~~~~~~~~~~~~i~~GVvD~~s~~ves~eev~~~i~~al~~i 750 (793)
|.+. |.-.++.+.. .++|+|++-.=.. |-.+.+.+...++.+.+..
T Consensus 204 ~~~~~~~~~~~~~d~l~~~g~d~DvIG~syYp~----------------------------W~~~l~~l~~~l~~l~~ry 255 (399)
T 1ur4_A 204 TNPETSGRYAWIAETLHRHHVDYDVFASSYYPF----------------------------WHGTLKNLTSVLTSVADTY 255 (399)
T ss_dssp CCTTSTTHHHHHHHHHHHTTCCCSEEEEEECTT----------------------------TSCCHHHHHHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHHHcCCCcCeEeEecCcc----------------------------chhhHHHHHHHHHHHHHHh
Confidence 9774 2233455543 4567777752110 1123556666666666555
Q ss_pred CCCcEEEcCCCCCC--------------------CCChhHHHHHHHHHHHHHHHH
Q 003819 751 ESNILWVNPDCGLK--------------------TRKYSEVKPALSNMVAAAKLL 785 (793)
Q Consensus 751 ~~~~l~vsPdCGL~--------------------t~~~~~~~~kL~~mv~aa~~~ 785 (793)
+..-+++-++|... .++++.+..-|+.|.++++.+
T Consensus 256 gKpV~v~EtG~~~~~~~~d~~~n~~~~~~~~~~~~~s~~gQa~~l~~l~~~v~~~ 310 (399)
T 1ur4_A 256 GKKVMVAETSYTYTAEDGDGHGNTAPKNGQTLNNPVTVQGQANAVRDVIQAVSDV 310 (399)
T ss_dssp CCEEEEEEECCCSCSCCSSSSCCSSSCTTSCCCSCSSHHHHHHHHHHHHHHHHTT
T ss_pred CCcEEEEEecCCccCCCCCCcccccccccccCCCCCCHHHHHHHHHHHHHHHHhc
Confidence 54444444454432 235566777787777766543
No 45
>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis}
Probab=71.48 E-value=74 Score=32.32 Aligned_cols=110 Identities=14% Similarity=0.081 Sum_probs=60.6
Q ss_pred HHHHHHcCCcEEEEcCcccc-----cCCCCCcccHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCchhHHHHHHcCCC
Q 003819 619 VEDLEKAGITVIQIDEAALR-----EGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDA 693 (793)
Q Consensus 619 v~~L~~aGv~~IQIDEPal~-----~~l~l~~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~C~g~~~~i~~~l~~l~~ 693 (793)
++.+.+.|+++||+-|+... ..+ +..++++.+...... +... .+.+.+|- -++...++++
T Consensus 49 ~~~al~~Gv~~vqlR~K~~~~~~~~~~l-----~~~~~~~~a~~l~~l-~~~~--~~~liInd-------~~~lA~~~gA 113 (243)
T 3o63_A 49 AEAALAGGVDIIQLRDKGSPGELRFGPL-----QARDELAACEILADA-AHRY--GALFAVND-------RADIARAAGA 113 (243)
T ss_dssp HHHHHHTTCSEEEECCTTCHHHHHHCSC-----CHHHHHHHHHHHHHH-HHHT--TCEEEEES-------CHHHHHHHTC
T ss_pred HHHHHHCCCCEEEEccCCCCccccccCC-----CHHHHHHHHHHHHHH-HHhh--CCEEEEeC-------HHHHHHHhCC
Confidence 33455789999999998732 001 234556655444333 3332 25677762 2445667899
Q ss_pred cEEEEecCCCChhhHHHhhhcccCCCeEeeeeecCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEcC
Q 003819 694 DVITIENSRSDEKLLSVFREGVKYRAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLESNILWVNP 759 (793)
Q Consensus 694 D~isiE~~r~~~~~L~~~~~~~~~~~~i~~GVvD~~s~~ves~eev~~~i~~al~~i~~~~l~vsP 759 (793)
|++++.........++.+. +.+..||+-+ -+++|+.. +.+ .+++-+.++|
T Consensus 114 dGVHLg~~dl~~~~~r~~~---~~~~~iG~S~--------ht~~Ea~~----A~~-~GaDyI~vgp 163 (243)
T 3o63_A 114 DVLHLGQRDLPVNVARQIL---APDTLIGRST--------HDPDQVAA----AAA-GDADYFCVGP 163 (243)
T ss_dssp SEEEECTTSSCHHHHHHHS---CTTCEEEEEE--------CSHHHHHH----HHH-SSCSEEEECC
T ss_pred CEEEecCCcCCHHHHHHhh---CCCCEEEEeC--------CCHHHHHH----Hhh-CCCCEEEEcC
Confidence 9999985543333333322 2234555543 45666533 322 4667677766
No 46
>1q7z_A 5-methyltetrahydrofolate S-homocysteine methyltransferase; methionine, cobalamin, vitamin B12; 1.70A {Thermotoga maritima} SCOP: c.1.21.2 c.1.26.1 PDB: 1q7q_A 1q7m_A 1q85_A 1q8a_A 1q8j_A* 3bof_A 3bol_A
Probab=70.35 E-value=14 Score=42.57 Aligned_cols=137 Identities=18% Similarity=0.251 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHHHHHCCCCEEEeeccccccCCChHHHHHHHHHHHHHHhccCCCcEEEEeccCCCc--------hhhHH
Q 003819 182 DKIIPVYKEVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVP--------AETYK 253 (793)
Q Consensus 182 ~~L~~~Y~~~l~~L~~aG~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~--------~~~~~ 253 (793)
+++...|++.++.|.+.||+.+-+. |-.+-.+..+...+.+.... +..++++.-|.+-+ .+.+.
T Consensus 122 ~e~~~~~~~qi~~l~~~gvD~l~~E-----T~~~~~Ea~aa~~a~~~~~~---~~Pv~vS~t~~~~g~~~~G~~~~~~~~ 193 (566)
T 1q7z_A 122 EEFYENFRETVEIMVEEGVDGIIFE-----TFSDILELKAAVLAAREVSR---DVFLIAHMTFDEKGRSLTGTDPANFAI 193 (566)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEEEE-----EECCHHHHHHHHHHHHHHCS---SSCEEEEECCCTTSCCTTSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEe-----ccCCHHHHHHHHHHHHHhCC---CCcEEEEEEEcCCCeeCCCCcHHHHHH
Confidence 7889999999999999999998665 11222455555555554322 35677775553110 56677
Q ss_pred HHhcCCCccEEEEEeccCCCChhhHhhhCC--CCCEEE----EEEe---eCCCCCCCCHHHHHHHHHHHhhhcCCCcEEE
Q 003819 254 ILTSLKGVTGFGFDLIRGTKTLDLIKTEFP--LGKYLF----AGVV---DGRNIWANDLASSLTTLQDLAGTVGKDKVVV 324 (793)
Q Consensus 254 ~l~~lp~Vd~l~lD~~~~~~~l~~l~~~~p--~~k~l~----lGvV---dgrn~w~ed~~~i~~~i~~~~~~v~~e~l~v 324 (793)
.+..++ ++++++....++..+.++.+.+. .++.++ .|+. |++..|..++++..+.+++..+. | ==+|
T Consensus 194 ~l~~~~-~~avG~NC~~gp~~~~~~l~~l~~~~~~p~~vyPNaG~p~~~~~~~~~~~~p~~~a~~~~~~~~~-G--~~ii 269 (566)
T 1q7z_A 194 TFDELD-IDALGINCSLGPEEILPIFQELSQYTDKFLVVEPNAGKPIVENGKTVYPLKPHDFAVHIDSYYEL-G--VNIF 269 (566)
T ss_dssp HHHTSS-CSEEEEESSSCHHHHHHHHHHHHHTCCSEEEEECCSSSCEEETTEEECCCCHHHHHTTHHHHHHT-T--CSEE
T ss_pred HhhccC-CCEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEEcCCCCCcccCCccccCCCHHHHHHHHHHHHHc-C--CcEE
Confidence 777888 99999999766555544443221 122222 1332 77778888888887777776542 3 1245
Q ss_pred eCCCCC
Q 003819 325 STSCSL 330 (793)
Q Consensus 325 spsCgL 330 (793)
.-=||-
T Consensus 270 GGCCGT 275 (566)
T 1q7z_A 270 GGCCGT 275 (566)
T ss_dssp CCCTTC
T ss_pred ccccCC
Confidence 667774
No 47
>1q7z_A 5-methyltetrahydrofolate S-homocysteine methyltransferase; methionine, cobalamin, vitamin B12; 1.70A {Thermotoga maritima} SCOP: c.1.21.2 c.1.26.1 PDB: 1q7q_A 1q7m_A 1q85_A 1q8a_A 1q8j_A* 3bof_A 3bol_A
Probab=69.65 E-value=51 Score=37.86 Aligned_cols=211 Identities=16% Similarity=0.131 Sum_probs=120.1
Q ss_pred HHHHHHHHHHHHcCCCcccCCCCccchhHHHHHhhccCceeeccceeeecCCccccCcEEEccCCCCCCcchhHHHHHHh
Q 003819 497 EEINNVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSMAQS 576 (793)
Q Consensus 497 ~~i~~~i~~Q~~~Gldvi~~Ge~~r~d~v~~f~e~l~G~~~~~~g~v~~~~~~~~~~P~i~g~v~~~~~~~~~~~~~aq~ 576 (793)
+.|+++-+.-.++|-|||+..-|.=+-. .+. .||-. . .-..+...-.+.|++
T Consensus 44 e~V~~iH~~Yl~AGAdii~TnTf~a~~~--~l~---------------~~g~~--------~---~~~el~~~av~lAr~ 95 (566)
T 1q7z_A 44 DVVLKVHRSYIESGSDVILTNTFGATRM--KLR---------------KHGLE--------D---KLDPIVRNAVRIARR 95 (566)
T ss_dssp HHHHHHHHHHHHHTCSEEECSCTTCSHH--HHG---------------GGTCG--------G---GHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcceeecCcccCCHH--HHH---------------hcCch--------H---HHHHHHHHHHHHHHH
Confidence 4566777788889999998876532211 000 11100 0 001122233444444
Q ss_pred cCCCCceeeechHHHHhhcccccCCCChHHHHHHHHHHHHHHHHHHHHcCCcEEEEcCcccccCCCCCcccHHHHHHHHH
Q 003819 577 MTKRPMKGMLTGPVTILNWSFVRNDQPRFETCYQIALAIKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAV 656 (793)
Q Consensus 577 ~t~kpvK~~LtGPvTll~~s~~~~~~~~~e~~~~lA~al~~ev~~L~~aGv~~IQIDEPal~~~l~l~~~~~~~~l~~av 656 (793)
..+....+--.||..-..-. ....+ .+++...+++.++.|.++|+++|-+.= ++ +. .....++
T Consensus 96 a~~~~~VAGsiGP~g~~~~~--~~~~~----~~e~~~~~~~qi~~l~~~gvD~l~~ET------~~----~~-~Ea~aa~ 158 (566)
T 1q7z_A 96 AAGEKLVFGDIGPTGELPYP--LGSTL----FEEFYENFRETVEIMVEEGVDGIIFET------FS----DI-LELKAAV 158 (566)
T ss_dssp HHTTSEEEEEECCCSCCBTT--TSSBC----HHHHHHHHHHHHHHHHHTTCSEEEEEE------EC----CH-HHHHHHH
T ss_pred HHhCCeEEEeCCCcccCCCC--CCCCC----HHHHHHHHHHHHHHHHhCCCCEEEEec------cC----CH-HHHHHHH
Confidence 32221334455886543211 01122 356788999999999999999876652 11 11 1234566
Q ss_pred HHHHHHhcCCCCCCeEEEEeCCC---------CchhHHHHHHcCCCcEEEEecCCCChhhH---HHhhhcccCCCeEeee
Q 003819 657 HSFRITNCGVQDTTQVHTHMCYS---------NFNDIIHSIMDMDADVITIENSRSDEKLL---SVFREGVKYRAGIGPG 724 (793)
Q Consensus 657 ~a~~~~~~~v~~~~~I~lH~C~g---------~~~~i~~~l~~l~~D~isiE~~r~~~~~L---~~~~~~~~~~~~i~~G 724 (793)
.+.+....++| +++.++.. ++.+.+..+..++++++++-.+.+..... +.+.. . . .+-++
T Consensus 159 ~a~~~~~~~~P----v~vS~t~~~~g~~~~G~~~~~~~~~l~~~~~~avG~NC~~gp~~~~~~l~~l~~-~-~--~~p~~ 230 (566)
T 1q7z_A 159 LAAREVSRDVF----LIAHMTFDEKGRSLTGTDPANFAITFDELDIDALGINCSLGPEEILPIFQELSQ-Y-T--DKFLV 230 (566)
T ss_dssp HHHHHHCSSSC----EEEEECCCTTSCCTTSCCHHHHHHHHHTSSCSEEEEESSSCHHHHHHHHHHHHH-T-C--CSEEE
T ss_pred HHHHHhCCCCc----EEEEEEEcCCCeeCCCCcHHHHHHHhhccCCCEEEEeCCCCHHHHHHHHHHHHh-c-C--CCEEE
Confidence 66666544543 66666652 25788888999999999999765433333 33333 1 1 22233
Q ss_pred ee---------cCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEcCCCCC
Q 003819 725 VY---------DIHSPRIPSTEEIADRINKMLAVLESNILWVNPDCGL 763 (793)
Q Consensus 725 Vv---------D~~s~~ves~eev~~~i~~al~~i~~~~l~vsPdCGL 763 (793)
++ |....|-.+|+++.+.+.+..+. |. -+|.=-||-
T Consensus 231 vyPNaG~p~~~~~~~~~~~~p~~~a~~~~~~~~~-G~--~iiGGCCGT 275 (566)
T 1q7z_A 231 VEPNAGKPIVENGKTVYPLKPHDFAVHIDSYYEL-GV--NIFGGCCGT 275 (566)
T ss_dssp EECCSSSCEEETTEEECCCCHHHHHTTHHHHHHT-TC--SEECCCTTC
T ss_pred EEcCCCCCcccCCccccCCCHHHHHHHHHHHHHc-CC--cEEccccCC
Confidence 33 33334567899999888887763 43 378888996
No 48
>3mcm_A 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase/dihydropteroate...; folate, TIM barrel, synthase, HPPK, DHPS; 2.20A {Francisella tularensis subsp} PDB: 3mcn_A* 3mco_A*
Probab=69.04 E-value=32 Score=38.25 Aligned_cols=151 Identities=13% Similarity=0.140 Sum_probs=76.2
Q ss_pred HHHHHHHHHcCCcEEEEcCcccccCCCCCcccHHHHHHHHHHHHHHHhc---CCCCCCeEEEEeCCCCchhHHHHHHc--
Q 003819 616 KDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNC---GVQDTTQVHTHMCYSNFNDIIHSIMD-- 690 (793)
Q Consensus 616 ~~ev~~L~~aGv~~IQIDEPal~~~l~l~~~~~~~~l~~av~a~~~~~~---~v~~~~~I~lH~C~g~~~~i~~~l~~-- 690 (793)
.+.++.+.++|+++|=|--.+-+.+.+ ..+.++.+++.++.++.+.+ .++.++.|.+-++.. ++++.-.+
T Consensus 215 l~~A~~mv~~GAdIIDIGgeSTrPGa~--~Vs~~EE~~Rv~pvI~~l~~~~~~~~~~vpISIDT~~~---~VaeaAL~~~ 289 (442)
T 3mcm_A 215 KLNLDELIQSGAEIIDIGAESTKPDAK--PISIEEEFNKLNEFLEYFKSQLANLIYKPLVSIDTRKL---EVMQKILAKH 289 (442)
T ss_dssp HHHHHHHHHHTCSEEEEECCCCCC------CCHHHHHHHHHHHHHHHHHHTTTCSSCCEEEEECCCH---HHHHHHHHHH
T ss_pred HHHHHHHHHCCCCEEEECCCCCCCCCC--CCCHHHHHHHHHHHHHHHHhhccccCCCCeEEEeCCCH---HHHHHHHhhC
Confidence 445677888999999888555444321 12345667777666666544 221135677777643 46666666
Q ss_pred CCCcE-EE-EecCCCChhhHHHhhhcccCCCeEeeeeecCC-CCC----------C-CCHHHHHHHHHHHHhh-cCCCcE
Q 003819 691 MDADV-IT-IENSRSDEKLLSVFREGVKYRAGIGPGVYDIH-SPR----------I-PSTEEIADRINKMLAV-LESNIL 755 (793)
Q Consensus 691 l~~D~-is-iE~~r~~~~~L~~~~~~~~~~~~i~~GVvD~~-s~~----------v-es~eev~~~i~~al~~-i~~~~l 755 (793)
.+++. |. +-. ..+.+.++..++ ++-.+.+ ...+ .|. + +-.+.+.++++++.+. ++.+++
T Consensus 290 aGa~i~INDVsg-~~d~~m~~v~a~---~g~~vVl--Mh~~G~P~tmq~~~y~dvv~ev~~~l~~~i~~a~~aGI~~~~I 363 (442)
T 3mcm_A 290 HDIIWMINDVEC-NNIEQKAQLIAK---YNKKYVI--IHNLGITDRNQYLDKENAIDNVCDYIEQKKQILLKHGIAQQNI 363 (442)
T ss_dssp GGGCCEEEECCC-TTHHHHHHHHHH---HTCEEEE--ECC----------------CTHHHHHHHHHHHHHHHTCCGGGE
T ss_pred CCCCEEEEcCCC-CCChHHHHHHHH---hCCeEEE--ECCCCCCccccccCcccHHHHHHHHHHHHHHHHHHcCCCHHHE
Confidence 77776 42 211 223445566555 2333332 1111 110 1 1234556777777664 455899
Q ss_pred EEcCCCCCCCCChhHHHHHHHHH
Q 003819 756 WVNPDCGLKTRKYSEVKPALSNM 778 (793)
Q Consensus 756 ~vsPdCGL~t~~~~~~~~kL~~m 778 (793)
++-|.-||. .+.+..++-|+++
T Consensus 364 ilDPGiGF~-Kt~~~nl~lL~~l 385 (442)
T 3mcm_A 364 YFDIGFGFG-KKSDTARYLLENI 385 (442)
T ss_dssp EEECCCC-------------CCH
T ss_pred EEeCCCCCC-CCHHHHHHHHHHH
Confidence 999988884 3333333444433
No 49
>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A
Probab=68.31 E-value=17 Score=36.43 Aligned_cols=97 Identities=15% Similarity=0.227 Sum_probs=51.5
Q ss_pred HHHHHHHHHHcCCcEEEEcCcccccCCCCCcccHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCchhHHHHHHcCCCc
Q 003819 615 IKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDAD 694 (793)
Q Consensus 615 l~~ev~~L~~aGv~~IQIDEPal~~~l~l~~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~C~g~~~~i~~~l~~l~~D 694 (793)
+.++++.+.++|+++||+|..-.. ..|.....+ ..+..++..+ + ..+.+|+---|-.+.++...+.++|
T Consensus 21 l~~~i~~~~~~Gad~i~l~i~Dg~-fv~~~~~~~-----~~~~~lr~~~---~--~~~~v~lmv~d~~~~i~~~~~agad 89 (228)
T 1h1y_A 21 LAAEADRMVRLGADWLHMDIMDGH-FVPNLTIGA-----PVIQSLRKHT---K--AYLDCHLMVTNPSDYVEPLAKAGAS 89 (228)
T ss_dssp HHHHHHHHHHTTCSEEEEEEEBSS-SSSCBCBCH-----HHHHHHHTTC---C--SEEEEEEESSCGGGGHHHHHHHTCS
T ss_pred HHHHHHHHHHcCCCEEEEEEecCC-cCcchhhCH-----HHHHHHHhhc---C--CcEEEEEEecCHHHHHHHHHHcCCC
Confidence 345677788999999999963211 011100111 2334444332 1 2345554433544567888889999
Q ss_pred EEEEe--cCCCC-hhhHHHhhhcccCCCeEeeee
Q 003819 695 VITIE--NSRSD-EKLLSVFREGVKYRAGIGPGV 725 (793)
Q Consensus 695 ~isiE--~~r~~-~~~L~~~~~~~~~~~~i~~GV 725 (793)
++++- ..... .+.++.+++ .+..+|+-+
T Consensus 90 ~v~vH~~~~~~~~~~~~~~i~~---~g~~igv~~ 120 (228)
T 1h1y_A 90 GFTFHIEVSRDNWQELIQSIKA---KGMRPGVSL 120 (228)
T ss_dssp EEEEEGGGCTTTHHHHHHHHHH---TTCEEEEEE
T ss_pred EEEECCCCcccHHHHHHHHHHH---cCCCEEEEE
Confidence 99554 33323 333555554 244555433
No 50
>1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1
Probab=67.92 E-value=90 Score=30.11 Aligned_cols=67 Identities=15% Similarity=0.158 Sum_probs=40.8
Q ss_pred HHHHHHHHHcCCcEEEEcCcccccCCCCCcccHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCchhHHHHHHcCCCcE
Q 003819 616 KDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDADV 695 (793)
Q Consensus 616 ~~ev~~L~~aGv~~IQIDEPal~~~l~l~~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~C~g~~~~i~~~l~~l~~D~ 695 (793)
.+.++.+.++|+++||+++|... ...+.+. +..++..+... .+.+.++ +-++...++++|+
T Consensus 29 ~~~~~~~~~~G~~~i~l~~~~~~---------~~~~~~~-~~~l~~~~~~~--~v~v~v~-------~~~~~a~~~gad~ 89 (215)
T 1xi3_A 29 VESVREALEGGATAIQMRIKNAP---------TREMYEI-GKTLRQLTREY--DALFFVD-------DRVDVALAVDADG 89 (215)
T ss_dssp HHHHHHHHHTTCSEEEECCCSCC---------HHHHHHH-HHHHHHHHHHT--TCEEEEE-------SCHHHHHHHTCSE
T ss_pred HHHHHHHHHCCCCEEEECCCCCC---------HHHHHHH-HHHHHHHHHHc--CCeEEEc-------ChHHHHHHcCCCE
Confidence 34566778899999999987532 2223333 22333333332 2445554 2356778899999
Q ss_pred EEEecC
Q 003819 696 ITIENS 701 (793)
Q Consensus 696 isiE~~ 701 (793)
+.+...
T Consensus 90 v~l~~~ 95 (215)
T 1xi3_A 90 VQLGPE 95 (215)
T ss_dssp EEECTT
T ss_pred EEECCc
Confidence 999743
No 51
>4dnh_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati YORK structural genomics research consortium; 2.50A {Sinorhizobium meliloti}
Probab=66.56 E-value=16 Score=38.92 Aligned_cols=107 Identities=21% Similarity=0.435 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEeeccccccCCChHHHHHHHHHHHHHHhccCCCcEEEE-----------eccCCCc
Q 003819 180 LIDKIIPVYKEVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIE-----------TYFADVP 248 (793)
Q Consensus 180 ll~~L~~~Y~~~l~~L~~aG~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~-----------tyfg~~~ 248 (793)
-++++..+|.|.+....++|.+.|-.--=+|+--. .-.+-+.++|.++...... +++|| .|||+-.
T Consensus 131 ~l~~V~~AY~EQ~~~Ve~~G~~~ILMASRaLA~~A--~~pdDY~~VY~~vL~q~~~-PVILHWLG~mFDPaL~GYWGs~d 207 (396)
T 4dnh_A 131 SIDDILAAYESQIEAIEAEGGRIILMASRALAAAA--KGPEDYIRVYDRVLSQVKE-PVIIHWLGEMFDPALEGYWGNAD 207 (396)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCEEECCCHHHHHHC--CSHHHHHHHHHHHHHHCSS-CEEEEEECTTTCGGGTTTTSCSS
T ss_pred CHHHHHHHHHHHHHHHHHcCCeEEEehhHHHHHHh--CCHHHHHHHHHHHHHhcCC-CEEEEecccccChhhccccCCCC
Confidence 46899999999999999999998876555544211 1357789999998876533 46665 5888542
Q ss_pred -h----hhHHHHh--cCCCccEEEEEeccCCCChhhHhhhCCCCCEEEEE
Q 003819 249 -A----ETYKILT--SLKGVTGFGFDLIRGTKTLDLIKTEFPLGKYLFAG 291 (793)
Q Consensus 249 -~----~~~~~l~--~lp~Vd~l~lD~~~~~~~l~~l~~~~p~~k~l~lG 291 (793)
+ -+++.+. .-. ||||-+-+-+...+.. ++..+|.+-.+.=|
T Consensus 208 ~~~A~~t~l~lI~~~~~k-VDGIKiSLLDa~~Ei~-lRrrLP~gVrmYTG 255 (396)
T 4dnh_A 208 HMAAMKTCLDVLEAHAAK-VDGIKISLLSKEKEIV-MRRQLPKGVRMYTG 255 (396)
T ss_dssp HHHHHHHHHHHHHHTGGG-EEEEEEESCCHHHHHH-HHTSCCTTCEEEEC
T ss_pred HHHHHHHHHHHHHhChhh-cCceEEeeeccHhHHH-HHHhCCCcceeecC
Confidence 2 2334443 236 9999998866322222 33357876555443
No 52
>1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2
Probab=59.29 E-value=16 Score=36.34 Aligned_cols=72 Identities=17% Similarity=0.312 Sum_probs=43.7
Q ss_pred HHHHHHHHHcCCcEEEEcC---cccccCCCCCcccHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCchhHHHHHHcCC
Q 003819 616 KDEVEDLEKAGITVIQIDE---AALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMD 692 (793)
Q Consensus 616 ~~ev~~L~~aGv~~IQIDE---Pal~~~l~l~~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~C~g~~~~i~~~l~~l~ 692 (793)
.+.++.+.++|+++||++. |... .+. ..+ ..+..++..+ +..+.+|+..-+.++.++.+.+++
T Consensus 26 ~~~i~~~~~~G~d~i~l~~~dg~f~~-~~~---~~~-----~~i~~l~~~~-----~~~~~v~l~vnd~~~~v~~~~~~G 91 (230)
T 1rpx_A 26 GEQVKAIEQAGCDWIHVDVMDGRFVP-NIT---IGP-----LVVDSLRPIT-----DLPLDVHLMIVEPDQRVPDFIKAG 91 (230)
T ss_dssp HHHHHHHHHTTCCCEEEEEEBSSSSS-CBC---CCH-----HHHHHHGGGC-----CSCEEEEEESSSHHHHHHHHHHTT
T ss_pred HHHHHHHHHCCCCEEEEeeccCCccc-ccc---cCH-----HHHHHHHhcc-----CCcEEEEEEecCHHHHHHHHHHcC
Confidence 4456778889999999975 2211 111 011 1233333322 134677877666555777888999
Q ss_pred CcEEEEecC
Q 003819 693 ADVITIENS 701 (793)
Q Consensus 693 ~D~isiE~~ 701 (793)
+|.+++-..
T Consensus 92 ad~v~vh~~ 100 (230)
T 1rpx_A 92 ADIVSVHCE 100 (230)
T ss_dssp CSEEEEECS
T ss_pred CCEEEEEec
Confidence 999987754
No 53
>2ob3_A Parathion hydrolase; metalloenzyme, TIM barrel, nerve agents; HET: KCX BTB; 1.04A {Brevundimonas diminuta} PDB: 1psc_A* 1jgm_A* 3cak_A* 1ez2_A* 1eyw_A* 1hzy_A 1i0b_A 1i0d_A 1p6b_A* 1p6c_A* 2oql_A* 2o4q_A* 3cs2_A* 3e3h_A* 1qw7_A* 1dpm_A* 2o4m_A* 1pta_A 3c86_A* 2d2j_A ...
Probab=59.20 E-value=67 Score=33.84 Aligned_cols=89 Identities=17% Similarity=0.053 Sum_probs=52.2
Q ss_pred eEEEEeC---CCCchhHHHHHHcCCCc--EEEEecC--CCChhhHHHhhhcccCCCeEeeeeecCCCC------------
Q 003819 671 QVHTHMC---YSNFNDIIHSIMDMDAD--VITIENS--RSDEKLLSVFREGVKYRAGIGPGVYDIHSP------------ 731 (793)
Q Consensus 671 ~I~lH~C---~g~~~~i~~~l~~l~~D--~isiE~~--r~~~~~L~~~~~~~~~~~~i~~GVvD~~s~------------ 731 (793)
.|++|+. .... ++++.+.+.+++ .+.+..+ ..+.+....+.+ .+-.|+++.+-.-+-
T Consensus 163 Pv~iH~~~~~r~a~-e~l~iL~~~g~~~~~~~i~H~f~~~~~e~a~~~~~---~G~~i~~~~~G~~tf~~~~~~~~~~~~ 238 (330)
T 2ob3_A 163 PVTTHTAASQRDGE-QQAAIFESEGLSPSRVCIGHSDDTDDLSYLTALAA---RGYLIGLDHIPYSAIGLEDNASASALL 238 (330)
T ss_dssp CEEEECCGGGTHHH-HHHHHHHHTTCCGGGEEECSGGGCCCHHHHHHHHH---TTCEEEECCTTCCCTTCTTCHHHHHHH
T ss_pred eEEEECCCCCCCHH-HHHHHHHHcCcCcccEEEeCCCCCCCHHHHHHHHh---CCCEEEeCCCccccccccccccccccc
Confidence 4889974 2223 667766665553 3344422 234444555544 244566663211110
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCcEEEcCCCCC
Q 003819 732 RIPSTEEIADRINKMLAVLESNILWVNPDCGL 763 (793)
Q Consensus 732 ~ves~eev~~~i~~al~~i~~~~l~vsPdCGL 763 (793)
.+.+.+.-.+.++++++.++.+++.+++||+.
T Consensus 239 ~~~~~~~~~~~l~~~~~~~p~drilleTD~p~ 270 (330)
T 2ob3_A 239 GIRSWQTRALLIKALIDQGYMKQILVSNDWTF 270 (330)
T ss_dssp CSSCHHHHHHHHHHHHHTTCGGGEEECCCCCS
T ss_pred cCCCHHHHHHHHHHHHHhCCCCeEEEeCCCCC
Confidence 01344455677889999999999999999995
No 54
>2dqw_A Dihydropteroate synthase; dimer, structural genomics; 1.65A {Thermus thermophilus} PDB: 2dza_A* 2dzb_A*
Probab=58.77 E-value=93 Score=32.63 Aligned_cols=148 Identities=8% Similarity=0.127 Sum_probs=77.3
Q ss_pred HHHHHHHHcCCcEEEEcCcccccCCCCCcccHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCchhHHHHHHcCCCcEE
Q 003819 617 DEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDADVI 696 (793)
Q Consensus 617 ~ev~~L~~aGv~~IQIDEPal~~~l~l~~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~C~g~~~~i~~~l~~l~~D~i 696 (793)
+..+.+.++|+++|=|---+.+.+.+. .+.++.++..++.++.+.+. +..|.+-++.. ++++.-++.+++.|
T Consensus 56 ~~a~~~v~~GAdIIDIGgeSTrPga~~--v~~~eE~~Rv~pvI~~l~~~---~vpiSIDT~~~---~Va~aAl~aGa~iI 127 (294)
T 2dqw_A 56 ERAREMVAEGADILDLGAESTRPGAAP--VPVEEEKRRLLPVLEAVLSL---GVPVSVDTRKP---EVAEEALKLGAHLL 127 (294)
T ss_dssp HHHHHHHHHTCSEEEEECC-------------CCHHHHHHHHHHHHHTT---CSCEEEECSCH---HHHHHHHHHTCSEE
T ss_pred HHHHHHHHCCCCEEEECCCcCCCCCCC--CCHHHHHHHHHHHHHHHHhC---CCeEEEECCCH---HHHHHHHHhCCCEE
Confidence 456778889999998886554443211 12334556666666665542 34577766643 46777667788866
Q ss_pred EEecCC-CChhhHHHhhhcccCCCeEeeeeec-CC--C----CCCCC-----HHHHHHHHHHHHhhcCCCcEEEcCCCCC
Q 003819 697 TIENSR-SDEKLLSVFREGVKYRAGIGPGVYD-IH--S----PRIPS-----TEEIADRINKMLAVLESNILWVNPDCGL 763 (793)
Q Consensus 697 siE~~r-~~~~~L~~~~~~~~~~~~i~~GVvD-~~--s----~~ves-----~eev~~~i~~al~~i~~~~l~vsPdCGL 763 (793)
. +.+- .+.+.++..++ ++-.+.+--.+ +. + +.-++ .+.+.++++.+.+ .|..++++.|..||
T Consensus 128 N-dVsg~~d~~m~~v~a~---~~~~vVlmh~~eG~p~tm~~~~~y~dv~~ev~~~l~~~i~~a~~-~Gi~~IilDPG~Gf 202 (294)
T 2dqw_A 128 N-DVTGLRDERMVALAAR---HGVAAVVMHMPVPDPATMMAHARYRDVVAEVKAFLEAQARRALS-AGVPQVVLDPGFGF 202 (294)
T ss_dssp E-CSSCSCCHHHHHHHHH---HTCEEEEECCSSSCTTTGGGGCCCSSHHHHHHHHHHHHHHHHHH-TTCSCEEEECCTTS
T ss_pred E-ECCCCCChHHHHHHHH---hCCCEEEEcCCCCCCccccccCccccHHHHHHHHHHHHHHHHHH-CCCCcEEEcCCCCc
Confidence 3 2221 24455665555 23333332222 11 1 11122 3344555666654 46669999998888
Q ss_pred CCCChhHHHHHHHHH
Q 003819 764 KTRKYSEVKPALSNM 778 (793)
Q Consensus 764 ~t~~~~~~~~kL~~m 778 (793)
+. +.+..+.-|+++
T Consensus 203 ~k-t~~~n~~ll~~l 216 (294)
T 2dqw_A 203 GK-LLEHNLALLRRL 216 (294)
T ss_dssp SC-CHHHHHHHHHTH
T ss_pred cc-CHHHHHHHHHHH
Confidence 53 444444444444
No 55
>3nl6_A Thiamine biosynthetic bifunctional enzyme; thiamin biosynthesis, eukaryoyes, transferase; HET: TPS ACP; 2.61A {Candida glabrata} PDB: 3nl2_A* 3nl5_A* 3nl3_A* 3nm3_A* 3nm1_A*
Probab=58.55 E-value=27 Score=39.89 Aligned_cols=66 Identities=21% Similarity=0.235 Sum_probs=40.8
Q ss_pred HHHHHHHcCCcEEEEcCcccccCCCCCcccHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCchhHHHHHHcCCCcEEE
Q 003819 618 EVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDADVIT 697 (793)
Q Consensus 618 ev~~L~~aGv~~IQIDEPal~~~l~l~~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~C~g~~~~i~~~l~~l~~D~is 697 (793)
.++.+.+.|+++||+.|+.+.. .++.+.+.... .++... .+.+.+|- -++...++++|+++
T Consensus 30 ~ve~al~~Gv~~vQlR~K~~~~---------~~~~~~a~~l~-~l~~~~--~v~liIND-------~~dlA~~~gAdGVH 90 (540)
T 3nl6_A 30 QVEAGLQNGVTLVQIREKDADT---------KFFIEEALQIK-ELCHAH--NVPLIIND-------RIDVAMAIGADGIH 90 (540)
T ss_dssp HHHHHHHTTCSEEEECCSSSCT---------THHHHHHHHHH-HHHHHT--TCCEEECS-------CSHHHHHTTCSEEE
T ss_pred HHHHHHHCCCCEEEEecCCCCH---------HHHHHHHHHHH-HHHHhc--CCEEEEeC-------cHHHHHHcCCCEEE
Confidence 3455667899999999987542 23444444433 333332 24466652 34566788999999
Q ss_pred EecCC
Q 003819 698 IENSR 702 (793)
Q Consensus 698 iE~~r 702 (793)
+....
T Consensus 91 Lgq~d 95 (540)
T 3nl6_A 91 VGQDD 95 (540)
T ss_dssp ECTTS
T ss_pred EChhh
Confidence 97543
No 56
>3gtx_A Organophosphorus hydrolase; mutant, amidohydrolase, alpha-beta barrel; HET: KCX; 1.62A {Deinococcus radiodurans} PDB: 2zc1_A* 3gti_A* 3gu9_A* 3gtf_A* 3gth_A* 3gu2_A* 3gu1_A* 3fdk_A* 3htw_A*
Probab=58.20 E-value=48 Score=35.39 Aligned_cols=129 Identities=15% Similarity=0.094 Sum_probs=71.1
Q ss_pred CCCCEEEeecccccc-CCChHHHHHHHHHHHHHHhccCCCcEEEEeccCCCchhhHHHHhcC--CCccEEEEEeccCCCC
Q 003819 198 AGATWIQFDEPTLVL-DLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSL--KGVTGFGFDLIRGTKT 274 (793)
Q Consensus 198 aG~~~VQiDEP~L~~-d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~l--p~Vd~l~lD~~~~~~~ 274 (793)
.|++.+.| |-.|.. .....+.+.|+...+. +... +..+++|+-.|.-..+.++.|.+. | ...+.+.-....++
T Consensus 151 tg~k~g~I-Eigld~~~~~~~q~~~f~aq~~l-A~~~-glPViiH~~~gr~a~~~~~iL~~~~~~-~~~~vi~H~~~~~~ 226 (339)
T 3gtx_A 151 TGIRAGVI-KLASSRDAITPYEQLFFRAAARV-QRET-GVPIITHTQEGQQGPQQAELLTSLGAD-PARIMIGHMDGNTD 226 (339)
T ss_dssp SSCCCSEE-EEECCSSCCCHHHHHHHHHHHHH-HHHH-CCCEEEECSTTCCHHHHHHHHHHTTCC-GGGEEECCGGGCCC
T ss_pred cCcccceE-EEEcCCCCCCHHHHHHHHHHHHH-HHHH-CCeEEEeCCCCcCHHHHHHHHHHcCCC-cccEEEEccCCCCC
Confidence 34555566 666654 3444555666555443 2222 356899985542213456666654 4 34444433322245
Q ss_pred hhhHhhhCCCCCEEEEEEeeCCCCCC--CCHHHHHHHHHHHhhhcCCCcEEEeCCCCCc
Q 003819 275 LDLIKTEFPLGKYLFAGVVDGRNIWA--NDLASSLTTLQDLAGTVGKDKVVVSTSCSLL 331 (793)
Q Consensus 275 l~~l~~~~p~~k~l~lGvVdgrn~w~--ed~~~i~~~i~~~~~~v~~e~l~vspsCgL~ 331 (793)
++...+.+..+-.|+++-+- ..... .+-.+-.+.++++.+..+.|||.+++||+..
T Consensus 227 ~e~a~~~l~~G~~i~~~g~~-t~~~~~~p~~~~~~~~l~~li~~~~~drilleTD~p~~ 284 (339)
T 3gtx_A 227 PAYHRETLRHGVSIAFDRIG-LQGMVGTPTDAERLSVLTTLLGEGYADRLLLSHDSIWH 284 (339)
T ss_dssp HHHHHHHHTTTCEEEECCTT-CCSSTTCCCHHHHHHHHHHHHHTTCGGGEEECCCCEEE
T ss_pred HHHHHHHHHcCcEEEEccCc-cccccCCCchHHHHHHHHHHHHhcCCCeEEEecCCCcc
Confidence 65555433345567775541 11111 1222455677888887888999999999975
No 57
>1ur4_A Galactanase; hydrolase, beta-1, glycoside hydrolase, substrate specificity, pectin, GH-A, family 53, plant cell WALL degradation; HET: B2G PGE; 2.2A {Bacillus licheniformis} SCOP: c.1.8.3 PDB: 1r8l_A* 1ur0_A* 2ccr_A* 2j74_A* 2gft_A*
Probab=56.84 E-value=1.4e+02 Score=32.53 Aligned_cols=125 Identities=20% Similarity=0.188 Sum_probs=76.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHCCC--CEEEe-eccccccCC---ChHHHHHHHHHHHHHHhccCCCcEEEEeccCCCch
Q 003819 176 SLLSLIDKIIPVYKEVVAELKAAGA--TWIQF-DEPTLVLDL---DSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPA 249 (793)
Q Consensus 176 ~~~~ll~~L~~~Y~~~l~~L~~aG~--~~VQi-DEP~L~~d~---~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~ 249 (793)
+..++...+..--++.++.|.+.|+ .+||+ .|+.....- .+...+.+..+|..+.+..+.++|++|..++.- .
T Consensus 131 ~~~~l~~~~~~yt~~~l~~l~~~g~~~~~vqvGNEi~~g~~~~~~~~~la~ll~ag~~aVR~v~p~~~V~ih~~~~~~-~ 209 (399)
T 1ur4_A 131 NFEDKKTALYQYTKQSLKAMKAAGIDIGMVQVGNETNGGLAGETDWAKMSQLFNAGSQAVRETDSNILVALHFTNPET-S 209 (399)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEESSSCSSCBTTBCCHHHHHHHHHHHHHHHHHHCTTSEEEEEECCTTS-T
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEccccccccCCcccHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCCcc-h
Confidence 4567777777656678889988885 57866 576653311 112345677777777665556788888877643 2
Q ss_pred hh----HHHHhcC--CCccEEEEEeccCCCChhhHhhhCCCCCEEEEEEeeCCCCCCCCHHHHHHHHHHHhhhcCCCcEE
Q 003819 250 ET----YKILTSL--KGVTGFGFDLIRGTKTLDLIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVV 323 (793)
Q Consensus 250 ~~----~~~l~~l--p~Vd~l~lD~~~~~~~l~~l~~~~p~~k~l~lGvVdgrn~w~ed~~~i~~~i~~~~~~v~~e~l~ 323 (793)
+. ++.+... . +|.|++.|-.. |-.+++.+.+.|+.+.+..+ ..|+
T Consensus 210 ~~~~~~~d~l~~~g~d-~DvIG~syYp~---------------------------W~~~l~~l~~~l~~l~~ryg-KpV~ 260 (399)
T 1ur4_A 210 GRYAWIAETLHRHHVD-YDVFASSYYPF---------------------------WHGTLKNLTSVLTSVADTYG-KKVM 260 (399)
T ss_dssp THHHHHHHHHHHTTCC-CSEEEEEECTT---------------------------TSCCHHHHHHHHHHHHHHHC-CEEE
T ss_pred HHHHHHHHHHHHcCCC-cCeEeEecCcc---------------------------chhhHHHHHHHHHHHHHHhC-CcEE
Confidence 22 3544433 4 66666665221 22346777778888866666 4455
Q ss_pred E-eCCCCC
Q 003819 324 V-STSCSL 330 (793)
Q Consensus 324 v-spsCgL 330 (793)
| =+.|..
T Consensus 261 v~EtG~~~ 268 (399)
T 1ur4_A 261 VAETSYTY 268 (399)
T ss_dssp EEEECCCS
T ss_pred EEEecCCc
Confidence 5 455553
No 58
>3rhg_A Putative phophotriesterase; hydrolase, amidohydrolase, zinc binding site, enzyme functio initiative, EFI; HET: SO4; 1.53A {Proteus mirabilis}
Probab=55.86 E-value=1.2e+02 Score=32.51 Aligned_cols=93 Identities=15% Similarity=0.182 Sum_probs=57.4
Q ss_pred CeEEEEeCC-C-CchhHHHHHHcC-CCc--EEEEe---cCCCChhhHHHhhhcccCCCeEeeeeec--CCCC---CCCCH
Q 003819 670 TQVHTHMCY-S-NFNDIIHSIMDM-DAD--VITIE---NSRSDEKLLSVFREGVKYRAGIGPGVYD--IHSP---RIPST 736 (793)
Q Consensus 670 ~~I~lH~C~-g-~~~~i~~~l~~l-~~D--~isiE---~~r~~~~~L~~~~~~~~~~~~i~~GVvD--~~s~---~ves~ 736 (793)
..|++|+.. | ...++++.|.+. +++ .+.+- .+..+.+....+.+ .+-.|+++-+- ..-+ ..++-
T Consensus 194 lPV~iH~~r~~~a~~e~l~iL~e~~~~~~~~vvi~H~~rs~~~~e~a~~~l~---~G~~I~~~g~g~~~tf~~~~~~~~d 270 (365)
T 3rhg_A 194 ASMNIHMPGWQRRGDEVLDILLTEMGCDPAKISLAHSDPSGKDIDYQCKMLD---RGVWLEFDMIGLDISFPKEGAAPSV 270 (365)
T ss_dssp CEEEEECCTTSCCHHHHHHHHTTTTCCCGGGEEESCCGGGTTCHHHHHHHHH---TTCEEEECCTTCCCBCSSSCBCCCH
T ss_pred CcEEEECCCCCcCHHHHHHHHHhccCCCCCceEEecCCCCCCCHHHHHHHHh---CCCEEEecCCCccccccccccccch
Confidence 459999733 2 356778777765 554 34333 12134444544544 24467766441 1111 13455
Q ss_pred HHHHHHHHHHHhhcCCCcEEEcCCCCCCC
Q 003819 737 EEIADRINKMLAVLESNILWVNPDCGLKT 765 (793)
Q Consensus 737 eev~~~i~~al~~i~~~~l~vsPdCGL~t 765 (793)
+.-.+.++++++..+.+|+.+++||+..+
T Consensus 271 ~~~a~~l~~li~~g~~drilleTD~p~l~ 299 (365)
T 3rhg_A 271 MDTVEAVATLIERGYGNQIVLSHDVFLKQ 299 (365)
T ss_dssp HHHHHHHHHHHHTTCGGGEEECCCCCSGG
T ss_pred HHHHHHHHHHHHhCCCCcEEEeCCCCCCC
Confidence 66778899999988899999999998865
No 59
>3rhg_A Putative phophotriesterase; hydrolase, amidohydrolase, zinc binding site, enzyme functio initiative, EFI; HET: SO4; 1.53A {Proteus mirabilis}
Probab=55.64 E-value=1.5e+02 Score=31.85 Aligned_cols=192 Identities=14% Similarity=0.100 Sum_probs=96.1
Q ss_pred chhHHHHHHHHHcCCCCceEeehHHHH-------hhhccCC-------CCcCCCCC---HHH---HHHHHHHHHHHHHHH
Q 003819 135 HKAVQEYKEAKALGMETVPVLVGPVSY-------LLLSKPA-------KGVEKSFS---LLS---LIDKIIPVYKEVVAE 194 (793)
Q Consensus 135 ~~~~~e~~~a~~~g~~~K~vl~GP~T~-------l~ls~~~-------~~~~~~~~---~~~---ll~~L~~~Y~~~l~~ 194 (793)
...+++.+.+++.|+.+=+.+.||... ..+++.. .|+ +.. +.. -+++|...+..++..
T Consensus 75 ~~~~~el~~~~~aGv~tiV~~~g~~g~~r~~~~l~~la~~~gi~i~~~tG~--y~~~~~P~~~~~~~~~L~~~~~~ei~~ 152 (365)
T 3rhg_A 75 EDVIFELNNFKELGGKTIVDATGSSSIGRDIRKLKQVAELTGINVVASSGL--YIEKFEGKRLADDIDAMAKMIDDELNI 152 (365)
T ss_dssp HHHHHHHHHHHHTTEEEEEECCCSGGGTCCHHHHHHHHHHHCCEEECEECC--CCHHHHGGGGGSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCCeEEEcCCCCCCCCCHHHHHHHHHHHCCcEEEEeCc--cCCCCCchhhcCCHHHHHHHHHHHHHh
Confidence 456788888888886554444435422 2233211 121 100 100 225555555444433
Q ss_pred H-HHCCCCEEEeeccccccCCChHHHHHHHHHHHHHHhccCCCcEEEEe-ccCCCchhhHHHHhcC---CCccEEEEEec
Q 003819 195 L-KAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIET-YFADVPAETYKILTSL---KGVTGFGFDLI 269 (793)
Q Consensus 195 L-~~aG~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~t-yfg~~~~~~~~~l~~l---p~Vd~l~lD~~ 269 (793)
. ...|++-.-|=|-.+.......+.+.|+...+ ++...++..|++|+ -.+.-..+.+..|.+- | ...+.+--.
T Consensus 153 gi~~t~vkag~IGEiGld~~~t~~q~~~f~aq~~-~A~~~~glPV~iH~~r~~~a~~e~l~iL~e~~~~~-~~~vvi~H~ 230 (365)
T 3rhg_A 153 GIDGTDIRAGMIGEIGVSPFFTDGEKNSLRAAAL-AQNNNPYASMNIHMPGWQRRGDEVLDILLTEMGCD-PAKISLAHS 230 (365)
T ss_dssp CSTTSSCCCCEEEEEECCTTCCHHHHHHHHHHHH-HHTTCTTCEEEEECCTTSCCHHHHHHHHTTTTCCC-GGGEEESCC
T ss_pred ccccCCceeEEEEEEEcCCCCCHHHHHHHHHHHH-HHHHhcCCcEEEECCCCCcCHHHHHHHHHhccCCC-CCceEEecC
Confidence 1 11233433333333332344455555555443 33333245688886 4443325677777644 3 334433222
Q ss_pred c-CCCChhhHhhhCCCCCEEEEEEeeCCCC-CC-----CCHHHHHHHHHHHhhhcCCCcEEEeCCCCCc
Q 003819 270 R-GTKTLDLIKTEFPLGKYLFAGVVDGRNI-WA-----NDLASSLTTLQDLAGTVGKDKVVVSTSCSLL 331 (793)
Q Consensus 270 ~-~~~~l~~l~~~~p~~k~l~lGvVdgrn~-w~-----ed~~~i~~~i~~~~~~v~~e~l~vspsCgL~ 331 (793)
. +.++++...+.+..+-.|+++-+ |+++ .. .+-++-.+.|+++.+..+.+||.|++||+.+
T Consensus 231 ~rs~~~~e~a~~~l~~G~~I~~~g~-g~~~tf~~~~~~~~d~~~a~~l~~li~~g~~drilleTD~p~l 298 (365)
T 3rhg_A 231 DPSGKDIDYQCKMLDRGVWLEFDMI-GLDISFPKEGAAPSVMDTVEAVATLIERGYGNQIVLSHDVFLK 298 (365)
T ss_dssp GGGTTCHHHHHHHHHTTCEEEECCT-TCCCBCSSSCBCCCHHHHHHHHHHHHHTTCGGGEEECCCCCSG
T ss_pred CCCCCCHHHHHHHHhCCCEEEecCC-CccccccccccccchHHHHHHHHHHHHhCCCCcEEEeCCCCCC
Confidence 2 11455554432223556777654 3221 11 1234566678888887788999999999885
No 60
>2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP: c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A* 3o16_A 1g4s_A* 1g4p_A* 1g67_A*
Probab=55.23 E-value=80 Score=30.88 Aligned_cols=108 Identities=17% Similarity=0.174 Sum_probs=56.9
Q ss_pred HHHHHHHHHCCCCEEEeeccccccCCChHHH---HHHHHHHHHHHhccCCCcEEEEeccCCCchhhHHHHhcCCCccEEE
Q 003819 189 KEVVAELKAAGATWIQFDEPTLVLDLDSHKL---QAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFG 265 (793)
Q Consensus 189 ~~~l~~L~~aG~~~VQiDEP~L~~d~~~~~~---~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~lp~Vd~l~ 265 (793)
.+.++.+.++|+++||++++.... ... ..+.+....+.... ++++++..+ .+...++. +|+++
T Consensus 34 ~~~~~~~~~~G~~~i~l~~~~~~~----~~~~~~~~~~~~l~~~~~~~-~v~v~v~~~--------~~~a~~~g-ad~v~ 99 (227)
T 2tps_A 34 VTVVQKALKGGATLYQFREKGGDA----LTGEARIKFAEKAQAACREA-GVPFIVNDD--------VELALNLK-ADGIH 99 (227)
T ss_dssp HHHHHHHHHHTCSEEEECCCSTTC----CCHHHHHHHHHHHHHHHHHH-TCCEEEESC--------HHHHHHHT-CSEEE
T ss_pred HHHHHHHHHCCCCEEEEecCCCCH----hHHHHHHHHHHHHHHHHHHc-CCeEEEcCH--------HHHHHHcC-CCEEE
Confidence 345667778999999999876432 112 22223333332221 356766522 34566778 99999
Q ss_pred EEeccCCCChhhHhhhCCCCCEEEEEEeeCCCCCCCCHHHHHHHHHHHhhhcCCCcEEEeC
Q 003819 266 FDLIRGTKTLDLIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVST 326 (793)
Q Consensus 266 lD~~~~~~~l~~l~~~~p~~k~l~lGvVdgrn~w~ed~~~i~~~i~~~~~~v~~e~l~vsp 326 (793)
+.-.. ..+..+.+.++. +.+|+ +. .+++++. .+. ..|.+-+.++|
T Consensus 100 l~~~~--~~~~~~~~~~g~---~~~~~-s~-----~t~~e~~----~a~-~~g~d~v~~~~ 144 (227)
T 2tps_A 100 IGQED--ANAKEVRAAIGD---MILGV-SA-----HTMSEVK----QAE-EDGADYVGLGP 144 (227)
T ss_dssp ECTTS--SCHHHHHHHHTT---SEEEE-EE-----CSHHHHH----HHH-HHTCSEEEECC
T ss_pred ECCCc--cCHHHHHHhcCC---cEEEE-ec-----CCHHHHH----HHH-hCCCCEEEECC
Confidence 94222 234444432432 34454 11 3555532 222 24667788755
No 61
>3gtx_A Organophosphorus hydrolase; mutant, amidohydrolase, alpha-beta barrel; HET: KCX; 1.62A {Deinococcus radiodurans} PDB: 2zc1_A* 3gti_A* 3gu9_A* 3gtf_A* 3gth_A* 3gu2_A* 3gu1_A* 3fdk_A* 3htw_A*
Probab=54.81 E-value=1.1e+02 Score=32.59 Aligned_cols=144 Identities=15% Similarity=0.108 Sum_probs=74.9
Q ss_pred HHHHHHHHHHH-HHHHHcCCcEEEEcCcccccCCCCCcccHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCC-CchhHHH
Q 003819 609 YQIALAIKDEV-EDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYS-NFNDIIH 686 (793)
Q Consensus 609 ~~lA~al~~ev-~~L~~aGv~~IQIDEPal~~~l~l~~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~C~g-~~~~i~~ 686 (793)
++|+..+.+++ ..+.+.|++...| |-++... ... ..-.+.....++.+.+ . +..|++|+..| +-.+.++
T Consensus 134 ~~L~~~~~~e~~~gIg~tg~k~g~I-Eigld~~-~~~----~~q~~~f~aq~~lA~~-~--glPViiH~~~gr~a~~~~~ 204 (339)
T 3gtx_A 134 SEIYEMMRTEVTEGIAGTGIRAGVI-KLASSRD-AIT----PYEQLFFRAAARVQRE-T--GVPIITHTQEGQQGPQQAE 204 (339)
T ss_dssp HHHHHHHHHHHHTCSTTSSCCCSEE-EEECCSS-CCC----HHHHHHHHHHHHHHHH-H--CCCEEEECSTTCCHHHHHH
T ss_pred HHHHHHHHHHHHhcccccCcccceE-EEEcCCC-CCC----HHHHHHHHHHHHHHHH-H--CCeEEEeCCCCcCHHHHHH
Confidence 45555554443 2233345555556 6655543 111 1112222223333322 1 13499998653 2224677
Q ss_pred HHHcCCCc--EEEEe-cC-CCChhhHHHhhhcccCCCeEeeeeecCC-CCCCCCHHHHHHHHHHHHhhcCCCcEEEcCCC
Q 003819 687 SIMDMDAD--VITIE-NS-RSDEKLLSVFREGVKYRAGIGPGVYDIH-SPRIPSTEEIADRINKMLAVLESNILWVNPDC 761 (793)
Q Consensus 687 ~l~~l~~D--~isiE-~~-r~~~~~L~~~~~~~~~~~~i~~GVvD~~-s~~ves~eev~~~i~~al~~i~~~~l~vsPdC 761 (793)
.|.+.+++ .+.+- .- ..+.+....+.+ .+-.|+++-+.+. ....++-..-.+.++++++..+.+|+.+++||
T Consensus 205 iL~~~~~~~~~~vi~H~~~~~~~e~a~~~l~---~G~~i~~~g~~t~~~~~~p~~~~~~~~l~~li~~~~~drilleTD~ 281 (339)
T 3gtx_A 205 LLTSLGADPARIMIGHMDGNTDPAYHRETLR---HGVSIAFDRIGLQGMVGTPTDAERLSVLTTLLGEGYADRLLLSHDS 281 (339)
T ss_dssp HHHHTTCCGGGEEECCGGGCCCHHHHHHHHT---TTCEEEECCTTCCSSTTCCCHHHHHHHHHHHHHTTCGGGEEECCCC
T ss_pred HHHHcCCCcccEEEEccCCCCCHHHHHHHHH---cCcEEEEccCccccccCCCchHHHHHHHHHHHHhcCCCeEEEecCC
Confidence 77766554 34333 21 134454555544 3456777554221 11123433556788888898899999999999
Q ss_pred CCC
Q 003819 762 GLK 764 (793)
Q Consensus 762 GL~ 764 (793)
+..
T Consensus 282 p~~ 284 (339)
T 3gtx_A 282 IWH 284 (339)
T ss_dssp EEE
T ss_pred Ccc
Confidence 963
No 62
>3k2g_A Resiniferatoxin-binding, phosphotriesterase- related protein; TIM barrel, binuclear zinc, protein structure initiative II (PSI II); 1.80A {Rhodobacter sphaeroides 2}
Probab=53.70 E-value=52 Score=35.51 Aligned_cols=91 Identities=14% Similarity=0.136 Sum_probs=56.9
Q ss_pred eEEEEeC-CC-CchhHHHHHHcCCCc--EEE---EecCCCChhhHHHhhhcccCCCeEeeeeecCC--CC----CCCCHH
Q 003819 671 QVHTHMC-YS-NFNDIIHSIMDMDAD--VIT---IENSRSDEKLLSVFREGVKYRAGIGPGVYDIH--SP----RIPSTE 737 (793)
Q Consensus 671 ~I~lH~C-~g-~~~~i~~~l~~l~~D--~is---iE~~r~~~~~L~~~~~~~~~~~~i~~GVvD~~--s~----~ves~e 737 (793)
.|++|+. .| ...++++.+.+.+++ .+. +..+..+.+....+.+ .+-.|+++-+-+- -+ +.++-+
T Consensus 205 PV~iH~~gr~~a~~e~l~iL~e~g~~~~~vvi~H~~~s~~~~e~a~~~l~---~G~~I~f~g~gt~~~f~~~~~~~~~d~ 281 (364)
T 3k2g_A 205 PLMVHLPGWFRLAHRVLDLVEEEGADLRHTVLCHMNPSHMDPVYQATLAQ---RGAFLEFDMIGMDFFYADQGVQCPSDD 281 (364)
T ss_dssp CEEEECCTTSCCHHHHHHHHHHTTCCGGGEEECCCGGGTTCHHHHHHHHH---HTCEEEECCTTCCCEETTTTEECCCHH
T ss_pred eEEEecCCCCccHHHHHHHHHHcCCCCCceEEECCCCCCCCHHHHHHHHh---CCcEEEecCCcccccccccccccccHH
Confidence 4999973 43 356778877766654 333 3322214444444444 2445666643221 11 246667
Q ss_pred HHHHHHHHHHhhcCCCcEEEcCCCCCC
Q 003819 738 EIADRINKMLAVLESNILWVNPDCGLK 764 (793)
Q Consensus 738 ev~~~i~~al~~i~~~~l~vsPdCGL~ 764 (793)
+-.+.++++++..+.+|+.+++||+..
T Consensus 282 ~ra~~l~~lv~~gp~drilleTD~p~~ 308 (364)
T 3k2g_A 282 EVARAILGLADHGYLDRILLSHDVFVK 308 (364)
T ss_dssp HHHHHHHHHHHTTCGGGEEECCCCCSG
T ss_pred HHHHHHHHHHHhCCcccEEEeCCCCCC
Confidence 788899999999999999999999754
No 63
>3tn4_A Phosphotriesterase; lactonase, hydrolase; HET: KCX; 1.50A {Geobacillus kaustophilus} PDB: 3tnb_A* 3tn3_A* 3tn5_A* 3tn6_A* 3ojg_A* 3orw_A* 3f4c_A* 3f4d_A*
Probab=53.02 E-value=46 Score=35.92 Aligned_cols=109 Identities=13% Similarity=0.047 Sum_probs=60.2
Q ss_pred CChHHHHHHHHHHHHHHhccCCCcEEEEeccCCCchhhHHHHhcCCCcc--EE---EEEeccCCCChhhHhhhCCCCCEE
Q 003819 214 LDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVT--GF---GFDLIRGTKTLDLIKTEFPLGKYL 288 (793)
Q Consensus 214 ~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~lp~Vd--~l---~lD~~~~~~~l~~l~~~~p~~k~l 288 (793)
+++.+...|+.+...- ... +..|++||--+.-..+.+..|.+.. ++ .+ |+++.. +.+..++-+..+-.|
T Consensus 187 ~t~~E~k~frA~a~aa-~et-G~Pv~iHt~~~~~~~e~l~iL~eeG-~~~~~vvi~H~~~~~---d~~~~~~~l~~G~yl 260 (360)
T 3tn4_A 187 ITEYEKMFFRAAARAQ-KET-GAVIITHTQEGTMGPEQAAYLLEHG-ADPKKIVIGHMCDNT---DPDYHRKTLAYGVYI 260 (360)
T ss_dssp CCHHHHHHHHHHHHHH-HHH-CCEEEEECSTTCCHHHHHHHHHHTT-CCGGGEEECCGGGCC---CHHHHHHHHTTTCEE
T ss_pred CCHHHHHHHHHHHHHH-HHh-CCcEEEEcCcccCCHHHHHHHHHcC-CCCCceEEEcCCCCC---CHHHHHHHHHcCCEE
Confidence 3444555555444332 222 4679999876543124567777655 54 23 334433 344333323345567
Q ss_pred EEEEe--eCCCCCCCCHHHHHHHHHHHhhhcCCCcEEEeCCCC
Q 003819 289 FAGVV--DGRNIWANDLASSLTTLQDLAGTVGKDKVVVSTSCS 329 (793)
Q Consensus 289 ~lGvV--dgrn~w~ed~~~i~~~i~~~~~~v~~e~l~vspsCg 329 (793)
++.-+ ++.-... +-++-.+.|.++.+..+.|||.||+||+
T Consensus 261 ~fD~iG~~~~~~~p-~d~~r~~~l~~lv~~g~~drILLstDa~ 302 (360)
T 3tn4_A 261 AFDRFGIQGMVGAP-TDEERVRTLLALLRDGYEKQIMLSHDTV 302 (360)
T ss_dssp EECCTTCCCSTTCC-CHHHHHHHHHHHHHTTCGGGEEECCCCE
T ss_pred EEcccccccccCCC-ChHHHHHHHHHHHHhcCcceEEEecCCC
Confidence 66322 2222222 2355567788888888889999999994
No 64
>2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2
Probab=52.81 E-value=69 Score=31.24 Aligned_cols=95 Identities=15% Similarity=0.180 Sum_probs=52.3
Q ss_pred HHHHHHHHHHcCCcEEEEcCccc--ccCCCCCcccHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCchhHHHHHHcCC
Q 003819 615 IKDEVEDLEKAGITVIQIDEAAL--REGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMD 692 (793)
Q Consensus 615 l~~ev~~L~~aGv~~IQIDEPal--~~~l~l~~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~C~g~~~~i~~~l~~l~ 692 (793)
+.+.++.+.++|+++||+|.-.- ...+ ...+ ..+..++..+ +..+.+|+.--+-.+.++.+.+++
T Consensus 18 ~~~~~~~~~~~G~~~i~~~~~dg~~~~~~---~~g~-----~~i~~i~~~~-----~~~~~v~l~v~d~~~~i~~~~~~g 84 (220)
T 2fli_A 18 FASELARIEETDAEYVHIDIMDGQFVPNI---SFGA-----DVVASMRKHS-----KLVFDCHLMVVDPERYVEAFAQAG 84 (220)
T ss_dssp HHHHHHHHHHTTCCEEEEEEEBSSSSSCB---CBCH-----HHHHHHHTTC-----CSEEEEEEESSSGGGGHHHHHHHT
T ss_pred HHHHHHHHHHcCCCEEEEEeecCCCCCcc---ccCH-----HHHHHHHHhC-----CCCEEEEEeecCHHHHHHHHHHcC
Confidence 34556778889999999995221 1111 0011 1233343322 235677766545444568889999
Q ss_pred CcEEEEecCCC-C-hhhHHHhhhcccCCCeEeeee
Q 003819 693 ADVITIENSRS-D-EKLLSVFREGVKYRAGIGPGV 725 (793)
Q Consensus 693 ~D~isiE~~r~-~-~~~L~~~~~~~~~~~~i~~GV 725 (793)
+|.+.+-.... . ....+.+++ .+..+++.+
T Consensus 85 ad~v~vh~~~~~~~~~~~~~~~~---~g~~i~~~~ 116 (220)
T 2fli_A 85 ADIMTIHTESTRHIHGALQKIKA---AGMKAGVVI 116 (220)
T ss_dssp CSEEEEEGGGCSCHHHHHHHHHH---TTSEEEEEE
T ss_pred CCEEEEccCccccHHHHHHHHHH---cCCcEEEEE
Confidence 99998853222 2 223344444 244566665
No 65
>2bmb_A Folic acid synthesis protein FOL1; folate biosynthesis, transferase, ligase, multifunctional enzyme; HET: PMM; 2.3A {Saccharomyces cerevisiae}
Probab=52.31 E-value=1.1e+02 Score=34.81 Aligned_cols=92 Identities=13% Similarity=0.238 Sum_probs=57.1
Q ss_pred HHHHHHHHcC-----CcEEEEcCcccccCCCCCcccHHHHHHHHHHHHHHHhcC-CC--CCCeEEEEeCCCCchhHHHHH
Q 003819 617 DEVEDLEKAG-----ITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCG-VQ--DTTQVHTHMCYSNFNDIIHSI 688 (793)
Q Consensus 617 ~ev~~L~~aG-----v~~IQIDEPal~~~l~l~~~~~~~~l~~av~a~~~~~~~-v~--~~~~I~lH~C~g~~~~i~~~l 688 (793)
+.++.+.+.| +++|=|---+.+.+.+ ..+.++.++..++.++.+.+. .+ .++.|.+-++.. ++++.-
T Consensus 253 ~~a~~mv~~G~~~~~AdIIDIGgeSTRPGa~--~vs~eEEl~RvvpvI~~i~~~~~~~~~~vpISIDT~~a---~VaeaA 327 (545)
T 2bmb_A 253 NDIIKLCKDALYLHESVIIDVGGCSTRPNSI--QASEEEEIRRSIPLIKAIRESTELPQDKVILSIDTYRS---NVAKEA 327 (545)
T ss_dssp HHHHHHHHHHHTTCSCEEEEEECSCCSTTCC--CCCHHHHHHHHHHHHHHHHHCSSSCGGGEEEEEECCCH---HHHHHH
T ss_pred HHHHHHHHcCCCCCCceEEEECCCCCCCCCC--CCCHHHHHHHHHHHHHHHHhhccccCCCCeEEEeCCcH---HHHHHH
Confidence 3456778889 9999888655554432 234566777777777776541 11 134577777754 577787
Q ss_pred HcCCCcEEE-EecCCCChhhHHHhhh
Q 003819 689 MDMDADVIT-IENSRSDEKLLSVFRE 713 (793)
Q Consensus 689 ~~l~~D~is-iE~~r~~~~~L~~~~~ 713 (793)
.+.++|.|. +-....+.+.++..++
T Consensus 328 l~aGadIINDVsg~~~d~~m~~vva~ 353 (545)
T 2bmb_A 328 IKVGVDIINDISGGLFDSNMFAVIAE 353 (545)
T ss_dssp HHTTCCEEEETTTTSSCTTHHHHHHT
T ss_pred HHcCCCEEEeCCCCcCChHHHHHHHH
Confidence 788999885 2211123455666665
No 66
>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*
Probab=52.18 E-value=64 Score=31.40 Aligned_cols=86 Identities=14% Similarity=0.189 Sum_probs=46.5
Q ss_pred HHHHHHHHHcCCcEEEEcCcccccCCCCCcccHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCchhHHHHHHcCCCcE
Q 003819 616 KDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDADV 695 (793)
Q Consensus 616 ~~ev~~L~~aGv~~IQIDEPal~~~l~l~~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~C~g~~~~i~~~l~~l~~D~ 695 (793)
.+.++.+.+.|+++||++++... . .+.++.+.+..+....|..-.++. ++-++...++++|.
T Consensus 22 ~~~~~~~~~~G~~~i~l~~~~~~---------~-------~~~i~~i~~~~~~~l~vg~g~~~~--~~~i~~a~~~Gad~ 83 (212)
T 2v82_A 22 LAHVGAVIDAGFDAVEIPLNSPQ---------W-------EQSIPAIVDAYGDKALIGAGTVLK--PEQVDALARMGCQL 83 (212)
T ss_dssp HHHHHHHHHHTCCEEEEETTSTT---------H-------HHHHHHHHHHHTTTSEEEEECCCS--HHHHHHHHHTTCCE
T ss_pred HHHHHHHHHCCCCEEEEeCCChh---------H-------HHHHHHHHHhCCCCeEEEeccccC--HHHHHHHHHcCCCE
Confidence 44566777899999999987411 1 112222222222123342222322 35678888999999
Q ss_pred EEEecCCCChhhHHHhhhcccCCCeEeee
Q 003819 696 ITIENSRSDEKLLSVFREGVKYRAGIGPG 724 (793)
Q Consensus 696 isiE~~r~~~~~L~~~~~~~~~~~~i~~G 724 (793)
+++... +.+.++..+. ++..+.+|
T Consensus 84 V~~~~~--~~~~~~~~~~---~g~~~~~g 107 (212)
T 2v82_A 84 IVTPNI--HSEVIRRAVG---YGMTVCPG 107 (212)
T ss_dssp EECSSC--CHHHHHHHHH---TTCEEECE
T ss_pred EEeCCC--CHHHHHHHHH---cCCCEEee
Confidence 986532 3444444443 34455566
No 67
>3k13_A 5-methyltetrahydrofolate-homocysteine methyltrans; 5-methyltetrahydrofolate,methyltransferase, TIM barrel, STRU genomics, PSI-2; HET: MSE THH GOL; 2.00A {Bacteroides thetaiotaomicron}
Probab=51.36 E-value=1.6e+02 Score=30.80 Aligned_cols=151 Identities=10% Similarity=0.085 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHcCCcEEEEcCcccccCCCCCcccHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCchhHHHHHHc--C
Q 003819 614 AIKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMD--M 691 (793)
Q Consensus 614 al~~ev~~L~~aGv~~IQIDEPal~~~l~l~~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~C~g~~~~i~~~l~~--l 691 (793)
...+.++.+.++|+++|=|--. . ...+..+.++++++.++...+.. ++.|.+-+... ++++.-++ .
T Consensus 38 ~a~~~A~~~v~~GAdiIDIg~g-----~--~~v~~~eem~rvv~~i~~~~~~~--~vpisIDT~~~---~V~eaaL~~~~ 105 (300)
T 3k13_A 38 EALSIARQQVEDGALVIDVNMD-----D--GLLDARTEMTTFLNLIMSEPEIA--RVPVMIDSSKW---EVIEAGLKCLQ 105 (300)
T ss_dssp HHHHHHHHHHHTTCSEEEEECC-----C--TTSCHHHHHHHHHHHHHTCHHHH--TSCEEEECSCH---HHHHHHHHHCS
T ss_pred HHHHHHHHHHHCCCCEEEECCC-----C--CCCCHHHHHHHHHHHHHHhhhcC--CCeEEEeCCCH---HHHHHHHHhcC
Confidence 3444566778899999877641 1 11234566778888776321111 23477776632 46666555 5
Q ss_pred CCcEEE-EecCCCCh---hhHHHhhhcccCCCeEeeeeecCC-CC-CCCCHHHHHHHHHHHH-hhc--CCCcEEEcCCCC
Q 003819 692 DADVIT-IENSRSDE---KLLSVFREGVKYRAGIGPGVYDIH-SP-RIPSTEEIADRINKML-AVL--ESNILWVNPDCG 762 (793)
Q Consensus 692 ~~D~is-iE~~r~~~---~~L~~~~~~~~~~~~i~~GVvD~~-s~-~ves~eev~~~i~~al-~~i--~~~~l~vsPdCG 762 (793)
+++.|. +-....+. +.+...++ ++-.+.+--.|.+ .| ..+..-++.+++.+++ ... +++++++-|..|
T Consensus 106 Ga~iINdIs~~~~d~~~~~~~~l~a~---~ga~vV~mh~d~~G~p~t~~~~~~i~~r~~~~~~~~~Gi~~~~IilDPgig 182 (300)
T 3k13_A 106 GKSIVNSISLKEGEEVFLEHARIIKQ---YGAATVVMAFDEKGQADTAARKIEVCERAYRLLVDKVGFNPHDIIFDPNVL 182 (300)
T ss_dssp SCCEEEEECSTTCHHHHHHHHHHHHH---HTCEEEEESEETTEECCSHHHHHHHHHHHHHHHHHHTCCCGGGEEEECCCC
T ss_pred CCCEEEeCCcccCChhHHHHHHHHHH---hCCeEEEEeeCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCHHHEEEeCCCC
Confidence 776553 22222122 33455554 3444554444321 11 1222335677777774 444 458999999986
Q ss_pred -CCCCChhH---HHHHHHHHH
Q 003819 763 -LKTRKYSE---VKPALSNMV 779 (793)
Q Consensus 763 -L~t~~~~~---~~~kL~~mv 779 (793)
|++...+. ...-|+++-
T Consensus 183 ~~gk~~~~~~~~~~~~l~~l~ 203 (300)
T 3k13_A 183 AVATGIEEHNNYAVDFIEATG 203 (300)
T ss_dssp CCSSSCGGGTTHHHHHHHHHH
T ss_pred ccCCChHHhhHHHHHHHHHHH
Confidence 76654432 444444443
No 68
>1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} PDB: 3qh2_A*
Probab=49.95 E-value=1.9e+02 Score=28.13 Aligned_cols=104 Identities=12% Similarity=0.088 Sum_probs=56.7
Q ss_pred HHHHHHCCCCEEEeeccccccCCChHHHHHHHHHHHHHHhccCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEEeccC
Q 003819 192 VAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLIRG 271 (793)
Q Consensus 192 l~~L~~aG~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~lp~Vd~l~lD~~~~ 271 (793)
+..+.++|++|||++++- .+.++...+.+....+. .+..++++.. ..+.+.+.. +|++|+....
T Consensus 35 ~~~~~~~G~~~v~lr~~~----~~~~~~~~~~~~l~~~~--~~~~~l~v~~--------~~~~a~~~g-ad~v~l~~~~- 98 (221)
T 1yad_A 35 IIITIQNEVDFIHIRERS----KSAADILKLLDLIFEGG--IDKRKLVMNG--------RVDIALFST-IHRVQLPSGS- 98 (221)
T ss_dssp HHHHHGGGCSEEEECCTT----SCHHHHHHHHHHHHHTT--CCGGGEEEES--------CHHHHHTTT-CCEEEECTTS-
T ss_pred HHHHHHCCCCEEEEccCC----CCHHHHHHHHHHHHHhc--CcCCeEEEeC--------hHHHHHHcC-CCEEEeCCCc-
Confidence 455668899999999764 33333332322222221 1112566652 145677888 9999996432
Q ss_pred CCChhhHhhhCCCCCEEEEEEeeCCCCCCCCHHHHHHHHHHHhhhcCCCcEEEeC
Q 003819 272 TKTLDLIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVST 326 (793)
Q Consensus 272 ~~~l~~l~~~~p~~k~l~lGvVdgrn~w~ed~~~i~~~i~~~~~~v~~e~l~vsp 326 (793)
...+.++...+ +..+++.+ .+++++ +++.+ .|.|-|.++|
T Consensus 99 -~~~~~~~~~~~-~~~ig~sv--------~t~~~~----~~a~~-~gaD~i~~~~ 138 (221)
T 1yad_A 99 -FSPKQIRARFP-HLHIGRSV--------HSLEEA----VQAEK-EDADYVLFGH 138 (221)
T ss_dssp -CCHHHHHHHCT-TCEEEEEE--------CSHHHH----HHHHH-TTCSEEEEEC
T ss_pred -cCHHHHHHHCC-CCEEEEEc--------CCHHHH----HHHHh-CCCCEEEECC
Confidence 23444554344 55555433 245553 23322 4667788876
No 69
>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A
Probab=48.42 E-value=30 Score=34.67 Aligned_cols=121 Identities=16% Similarity=0.223 Sum_probs=60.2
Q ss_pred HHHHHCCCCEEEeeccccccCCChHHHHHHHHHHHHHHhccCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEEecc--
Q 003819 193 AELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLIR-- 270 (793)
Q Consensus 193 ~~L~~aG~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~lp~Vd~l~lD~~~-- 270 (793)
+.+.++|+++||+++---........ + ....+.+.. ...+.++.-..+. + -++.+.+.. +|++++-...
T Consensus 39 ~~~~~~Gad~i~v~~~d~~~~~~~~~-~----~i~~i~~~~-~ipv~v~ggI~~~-~-~~~~~l~~G-ad~V~lg~~~l~ 109 (244)
T 1vzw_A 39 LAWQRSGAEWLHLVDLDAAFGTGDNR-A----LIAEVAQAM-DIKVELSGGIRDD-D-TLAAALATG-CTRVNLGTAALE 109 (244)
T ss_dssp HHHHHTTCSEEEEEEHHHHHTSCCCH-H----HHHHHHHHC-SSEEEEESSCCSH-H-HHHHHHHTT-CSEEEECHHHHH
T ss_pred HHHHHcCCCEEEEecCchhhcCCChH-H----HHHHHHHhc-CCcEEEECCcCCH-H-HHHHHHHcC-CCEEEECchHhh
Confidence 56678999999998622111111111 2 223333322 3567776433333 3 366777788 9999987542
Q ss_pred CCCChhhHhhhCCCCCEEEEEEeeC------CCCCCCCHHHHHHHHHHHhhhcCCCcEEEeC
Q 003819 271 GTKTLDLIKTEFPLGKYLFAGVVDG------RNIWANDLASSLTTLQDLAGTVGKDKVVVST 326 (793)
Q Consensus 271 ~~~~l~~l~~~~p~~k~l~lGvVdg------rn~w~ed~~~i~~~i~~~~~~v~~e~l~vsp 326 (793)
++..+..+.+.++ . .+.+|+ |. .+.|.++-....+.++++.+ .|.+.+.+.+
T Consensus 110 ~p~~~~~~~~~~g-~-~~~~~l-~~~~g~v~~~g~~~~~~~~~e~~~~~~~-~G~~~i~~~~ 167 (244)
T 1vzw_A 110 TPEWVAKVIAEHG-D-KIAVGL-DVRGTTLRGRGWTRDGGDLYETLDRLNK-EGCARYVVTD 167 (244)
T ss_dssp CHHHHHHHHHHHG-G-GEEEEE-EEETTEECCSSSCCCCCBHHHHHHHHHH-TTCCCEEEEE
T ss_pred CHHHHHHHHHHcC-C-cEEEEE-EccCCEEEEcCcccCCCCHHHHHHHHHh-CCCCEEEEec
Confidence 2222333333343 2 233443 22 34565522222333444433 4667787754
No 70
>1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1
Probab=48.41 E-value=73 Score=30.75 Aligned_cols=108 Identities=16% Similarity=0.159 Sum_probs=57.2
Q ss_pred HHHHHHHHHCCCCEEEeeccccccCCChHHHHHHHHHHHHHHhccCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEEe
Q 003819 189 KEVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDL 268 (793)
Q Consensus 189 ~~~l~~L~~aG~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~lp~Vd~l~lD~ 268 (793)
.+.++.+.++|+++||+++|... ........+....+.... ++++++.. . .+.+.+.. +|++++..
T Consensus 29 ~~~~~~~~~~G~~~i~l~~~~~~----~~~~~~~~~~l~~~~~~~-~v~v~v~~----~----~~~a~~~g-ad~v~l~~ 94 (215)
T 1xi3_A 29 VESVREALEGGATAIQMRIKNAP----TREMYEIGKTLRQLTREY-DALFFVDD----R----VDVALAVD-ADGVQLGP 94 (215)
T ss_dssp HHHHHHHHHTTCSEEEECCCSCC----HHHHHHHHHHHHHHHHHT-TCEEEEES----C----HHHHHHHT-CSEEEECT
T ss_pred HHHHHHHHHCCCCEEEECCCCCC----HHHHHHHHHHHHHHHHHc-CCeEEEcC----h----HHHHHHcC-CCEEEECC
Confidence 35567778899999999987543 222222222222232221 35666641 1 34566778 99999863
Q ss_pred ccCCCChhhHhhhCCCCCEEEEEEeeCCCCCCCCHHHHHHHHHHHhhhcCCCcEEEeC
Q 003819 269 IRGTKTLDLIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVST 326 (793)
Q Consensus 269 ~~~~~~l~~l~~~~p~~k~l~lGvVdgrn~w~ed~~~i~~~i~~~~~~v~~e~l~vsp 326 (793)
.. ...+.+.... .+..+++.+ .+++++.. +.+ .|.+-+.++|
T Consensus 95 ~~--~~~~~~~~~~-~~~~~~v~~--------~t~~e~~~----~~~-~g~d~i~~~~ 136 (215)
T 1xi3_A 95 ED--MPIEVAKEIA-PNLIIGASV--------YSLEEALE----AEK-KGADYLGAGS 136 (215)
T ss_dssp TS--CCHHHHHHHC-TTSEEEEEE--------SSHHHHHH----HHH-HTCSEEEEEC
T ss_pred cc--CCHHHHHHhC-CCCEEEEec--------CCHHHHHH----HHh-cCCCEEEEcC
Confidence 22 1234444322 344444333 45566432 222 3667888765
No 71
>3o1n_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, lyase; 1.03A {Salmonella enterica subsp} PDB: 3s42_A 3l2i_A* 3lb0_A 4guf_A 4gug_A* 4guh_A* 3nnt_A* 4guj_A* 3m7w_A 3oex_A 4gfs_A* 4gui_A* 1gqn_A 1l9w_A* 1qfe_A*
Probab=48.14 E-value=1.6e+02 Score=30.44 Aligned_cols=140 Identities=16% Similarity=0.171 Sum_probs=76.9
Q ss_pred HHHHHHHHcCCcEEEEcCcccccCCCCCcccHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCC-----CC-------chhH
Q 003819 617 DEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCY-----SN-------FNDI 684 (793)
Q Consensus 617 ~ev~~L~~aGv~~IQIDEPal~~~l~l~~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~C~-----g~-------~~~i 684 (793)
.+++.+.+.|+++|.+-==.|.. .+..+++...+..++..+.++| |+++ |. |. +-++
T Consensus 56 ~~~~~~~~~gaD~VElRvD~l~~------~~~~~~v~~~l~~lr~~~~~~P----iI~T-~Rt~~eGG~~~~~~~~~~~l 124 (276)
T 3o1n_A 56 SEALAYREADFDILEWRVDHFAN------VTTAESVLEAAGAIREIITDKP----LLFT-FRSAKEGGEQALTTGQYIDL 124 (276)
T ss_dssp HHHHHHTTSCCSEEEEEGGGCTT------TTCHHHHHHHHHHHHHHCCSSC----EEEE-CCBGGGTCSBCCCHHHHHHH
T ss_pred HHHHHHhhCCCCEEEEEeccccc------cCcHHHHHHHHHHHHHhcCCCC----EEEE-EEEhhhCCCCCCCHHHHHHH
Confidence 34455566899987664212211 1112445556667777665654 5444 43 32 2357
Q ss_pred HHHHHcCC-CcEEEEecCCCChhhHHHhhh-cccCCCeEeeeeecCCCC-CCCCHHHHHHHHHHHHhhcCCC--cEEEcC
Q 003819 685 IHSIMDMD-ADVITIENSRSDEKLLSVFRE-GVKYRAGIGPGVYDIHSP-RIPSTEEIADRINKMLAVLESN--ILWVNP 759 (793)
Q Consensus 685 ~~~l~~l~-~D~isiE~~r~~~~~L~~~~~-~~~~~~~i~~GVvD~~s~-~ves~eev~~~i~~al~~i~~~--~l~vsP 759 (793)
+....+++ +|.|.+|.... .+.++.+.+ ....+..|. ++-|+. ..|+.+++..+++++.+ .|++ ++.+.|
T Consensus 125 l~~~l~~g~~dyIDvEl~~~-~~~~~~l~~~a~~~~~kvI---~S~Hdf~~tP~~~el~~~~~~~~~-~GaDIvKia~~a 199 (276)
T 3o1n_A 125 NRAAVDSGLVDMIDLELFTG-DDEVKATVGYAHQHNVAVI---MSNHDFHKTPAAEEIVQRLRKMQE-LGADIPKIAVMP 199 (276)
T ss_dssp HHHHHHHTCCSEEEEEGGGC-HHHHHHHHHHHHHTTCEEE---EEEEESSCCCCHHHHHHHHHHHHH-TTCSEEEEEECC
T ss_pred HHHHHhcCCCCEEEEECcCC-HHHHHHHHHHHHhCCCEEE---EEeecCCCCcCHHHHHHHHHHHHH-cCCCEEEEEecC
Confidence 77777888 99999997653 233433321 011233442 333442 24578999999999865 4555 455554
Q ss_pred CCCCCCCChhHHHHHHHHH
Q 003819 760 DCGLKTRKYSEVKPALSNM 778 (793)
Q Consensus 760 dCGL~t~~~~~~~~kL~~m 778 (793)
. +.+++..-|+..
T Consensus 200 ~------s~~Dvl~Ll~~~ 212 (276)
T 3o1n_A 200 Q------TKADVLTLLTAT 212 (276)
T ss_dssp S------SHHHHHHHHHHH
T ss_pred C------ChHHHHHHHHHH
Confidence 3 445554444433
No 72
>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A*
Probab=45.45 E-value=20 Score=35.87 Aligned_cols=123 Identities=15% Similarity=0.198 Sum_probs=60.8
Q ss_pred HHHHHHHCCCCEEEeeccccccCCChHHHHHHHHHHHHHHhccCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEEecc
Q 003819 191 VVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLIR 270 (793)
Q Consensus 191 ~l~~L~~aG~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~lp~Vd~l~lD~~~ 270 (793)
..+.+.++|+++||+++---........ +.+ ..+.+.. .+.+.++....+. + -++.+.+.. +|++++....
T Consensus 36 ~a~~~~~~Gad~i~v~~~d~~~~~~~~~-~~i----~~i~~~~-~ipv~v~ggi~~~-~-~~~~~l~~G-ad~V~lg~~~ 106 (244)
T 2y88_A 36 AALGWQRDGAEWIHLVDLDAAFGRGSNH-ELL----AEVVGKL-DVQVELSGGIRDD-E-SLAAALATG-CARVNVGTAA 106 (244)
T ss_dssp HHHHHHHTTCSEEEEEEHHHHTTSCCCH-HHH----HHHHHHC-SSEEEEESSCCSH-H-HHHHHHHTT-CSEEEECHHH
T ss_pred HHHHHHHcCCCEEEEEcCcccccCCChH-HHH----HHHHHhc-CCcEEEECCCCCH-H-HHHHHHHcC-CCEEEECchH
Confidence 3446778999999998621111111111 222 2333322 3567776443333 3 366777788 9999987643
Q ss_pred --CCCChhhHhhhCCCCCEEEEEEeeCC----C------CCCCCHHHHHHHHHHHhhhcCCCcEEEeC
Q 003819 271 --GTKTLDLIKTEFPLGKYLFAGVVDGR----N------IWANDLASSLTTLQDLAGTVGKDKVVVST 326 (793)
Q Consensus 271 --~~~~l~~l~~~~p~~k~l~lGvVdgr----n------~w~ed~~~i~~~i~~~~~~v~~e~l~vsp 326 (793)
++..+..+.+.++. .+.+|+ |.+ + .|.++.....+.++.+.+ .|.+.+.+++
T Consensus 107 l~~p~~~~~~~~~~g~--~~~~~l-d~~~~~~~~~v~~~g~~~~~~~~~e~~~~~~~-~G~~~i~~~~ 170 (244)
T 2y88_A 107 LENPQWCARVIGEHGD--QVAVGL-DVQIIDGEHRLRGRGWETDGGDLWDVLERLDS-EGCSRFVVTD 170 (244)
T ss_dssp HHCHHHHHHHHHHHGG--GEEEEE-EEEEETTEEEEEEGGGTEEEEEHHHHHHHHHH-TTCCCEEEEE
T ss_pred hhChHHHHHHHHHcCC--CEEEEE-eccccCCCCEEEECCccCCCCCHHHHHHHHHh-CCCCEEEEEe
Confidence 22223333333442 233343 222 1 444321123333444433 3667888765
No 73
>3cu2_A Ribulose-5-phosphate 3-epimerase; YP_718263.1, ribulose-PHOS epimerase family, structural genomics, joint center for STR genomics, JCSG; 1.91A {Haemophilus somnus}
Probab=45.10 E-value=71 Score=32.35 Aligned_cols=65 Identities=12% Similarity=0.094 Sum_probs=37.8
Q ss_pred HHHHHHHHCCCCEEEeec------cccccCCChHHHHHHHHHHHHHHhccCCCcEEEEeccCCCchhhHHHHhcCCCccE
Q 003819 190 EVVAELKAAGATWIQFDE------PTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTG 263 (793)
Q Consensus 190 ~~l~~L~~aG~~~VQiDE------P~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~lp~Vd~ 263 (793)
++++.+.++|++|+|+|. |.+.... ..+ +.+.+..+. ++++-.. +. ...++.+.+.. +|+
T Consensus 30 ~~i~~~~~~gad~lhvDvmDG~fvpn~t~G~--~~v-------~~lr~~~~~-DvhLMv~--~p-~~~i~~~~~aG-Ad~ 95 (237)
T 3cu2_A 30 EEVTTLLENQINVLHFDIADGQFSSLFTVGA--IGI-------KYFPTHCFK-DVHLMVR--NQ-LEVAKAVVANG-ANL 95 (237)
T ss_dssp HHHHHHHHTTCCEEEEEEEBSSSSSCBCBCT--HHH-------HTSCTTSEE-EEEEECS--CH-HHHHHHHHHTT-CSE
T ss_pred HHHHHHHHcCCCEEEEEEecCccccchhhhH--HHH-------HHHhhhCCC-CeEEEEE--CH-HHHHHHHHHcC-CCE
Confidence 457778899999999996 6555433 112 222221111 3333322 22 45577888888 999
Q ss_pred --EEEEe
Q 003819 264 --FGFDL 268 (793)
Q Consensus 264 --l~lD~ 268 (793)
+|.+-
T Consensus 96 itvH~ea 102 (237)
T 3cu2_A 96 VTLQLEQ 102 (237)
T ss_dssp EEEETTC
T ss_pred EEEecCC
Confidence 66554
No 74
>1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} PDB: 3qh2_A*
Probab=44.97 E-value=2.3e+02 Score=27.56 Aligned_cols=105 Identities=12% Similarity=0.094 Sum_probs=55.8
Q ss_pred HHHHHHcCCcEEEEcCcccccCCCCCcccHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCchhHHHHHHcCCCcEEEE
Q 003819 619 VEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDADVITI 698 (793)
Q Consensus 619 v~~L~~aGv~~IQIDEPal~~~l~l~~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~C~g~~~~i~~~l~~l~~D~isi 698 (793)
+..+.++|+++||++++.+. ..++.+. +..++... .+.. .+.++ +-++...+.++|++++
T Consensus 35 ~~~~~~~G~~~v~lr~~~~~---------~~~~~~~-~~~l~~~~--~~~~-~l~v~-------~~~~~a~~~gad~v~l 94 (221)
T 1yad_A 35 IIITIQNEVDFIHIRERSKS---------AADILKL-LDLIFEGG--IDKR-KLVMN-------GRVDIALFSTIHRVQL 94 (221)
T ss_dssp HHHHHGGGCSEEEECCTTSC---------HHHHHHH-HHHHHHTT--CCGG-GEEEE-------SCHHHHHTTTCCEEEE
T ss_pred HHHHHHCCCCEEEEccCCCC---------HHHHHHH-HHHHHHhc--CcCC-eEEEe-------ChHHHHHHcCCCEEEe
Confidence 55677889999999976532 2233332 33333321 2211 34444 2357788999999999
Q ss_pred ecCCCChhhHHHhhhcccCCCeEeeeeecCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEcCC
Q 003819 699 ENSRSDEKLLSVFREGVKYRAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLESNILWVNPD 760 (793)
Q Consensus 699 E~~r~~~~~L~~~~~~~~~~~~i~~GVvD~~s~~ves~eev~~~i~~al~~i~~~~l~vsPd 760 (793)
...... .+.++...+ +..+|+.+ + +++++. ++.+ .+.+-+.++|-
T Consensus 95 ~~~~~~---~~~~~~~~~-~~~ig~sv---~-----t~~~~~----~a~~-~gaD~i~~~~~ 139 (221)
T 1yad_A 95 PSGSFS---PKQIRARFP-HLHIGRSV---H-----SLEEAV----QAEK-EDADYVLFGHV 139 (221)
T ss_dssp CTTSCC---HHHHHHHCT-TCEEEEEE---C-----SHHHHH----HHHH-TTCSEEEEECC
T ss_pred CCCccC---HHHHHHHCC-CCEEEEEc---C-----CHHHHH----HHHh-CCCCEEEECCc
Confidence 744322 233333111 33444432 3 455543 3322 45677777663
No 75
>2ob3_A Parathion hydrolase; metalloenzyme, TIM barrel, nerve agents; HET: KCX BTB; 1.04A {Brevundimonas diminuta} PDB: 1psc_A* 1jgm_A* 3cak_A* 1ez2_A* 1eyw_A* 1hzy_A 1i0b_A 1i0d_A 1p6b_A* 1p6c_A* 2oql_A* 2o4q_A* 3cs2_A* 3e3h_A* 1qw7_A* 1dpm_A* 2o4m_A* 1pta_A 3c86_A* 2d2j_A ...
Probab=44.68 E-value=2.9e+02 Score=28.82 Aligned_cols=125 Identities=10% Similarity=-0.028 Sum_probs=61.9
Q ss_pred CEEEeeccccccCCChHHHHHHHHHHHHHHhccCCCcEEEEec-cCCCchhhHHHHhcCCCcc--EEEEEeccCCCChhh
Q 003819 201 TWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETY-FADVPAETYKILTSLKGVT--GFGFDLIRGTKTLDL 277 (793)
Q Consensus 201 ~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~ty-fg~~~~~~~~~l~~lp~Vd--~l~lD~~~~~~~l~~ 277 (793)
+.+-| |.-|.......+.+.|....+ ++... +..+++|+. .|.-..+.++.|.+.. ++ .+.+--....++.+.
T Consensus 130 k~~ai-EiGld~~~~~~q~~~f~~q~~-lA~~~-glPv~iH~~~~~r~a~e~l~iL~~~g-~~~~~~~i~H~f~~~~~e~ 205 (330)
T 2ob3_A 130 RAGII-KVATTGKATPFQELVLKAAAR-ASLAT-GVPVTTHTAASQRDGEQQAAIFESEG-LSPSRVCIGHSDDTDDLSY 205 (330)
T ss_dssp CCSEE-EEECSSSCCHHHHHHHHHHHH-HHHHH-CCCEEEECCGGGTHHHHHHHHHHHTT-CCGGGEEECSGGGCCCHHH
T ss_pred ceeEE-EEeCCCCCCHHHHHHHHHHHH-HHHHh-CCeEEEECCCCCCCHHHHHHHHHHcC-cCcccEEEeCCCCCCCHHH
Confidence 44555 554432233344455544433 33322 357888874 2211023455555444 43 322222211234444
Q ss_pred HhhhCCCCCEEEEEEeeCCCCC-------------CCCHHHHHHHHHHHhhhcCCCcEEEeCCCCC
Q 003819 278 IKTEFPLGKYLFAGVVDGRNIW-------------ANDLASSLTTLQDLAGTVGKDKVVVSTSCSL 330 (793)
Q Consensus 278 l~~~~p~~k~l~lGvVdgrn~w-------------~ed~~~i~~~i~~~~~~v~~e~l~vspsCgL 330 (793)
..+.+..+-.|+++. -|.... ..+.++-.+.++++.+.++.++|.|+|||+.
T Consensus 206 a~~~~~~G~~i~~~~-~G~~tf~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~drilleTD~p~ 270 (330)
T 2ob3_A 206 LTALAARGYLIGLDH-IPYSAIGLEDNASASALLGIRSWQTRALLIKALIDQGYMKQILVSNDWTF 270 (330)
T ss_dssp HHHHHHTTCEEEECC-TTCCCTTCTTCHHHHHHHCSSCHHHHHHHHHHHHHTTCGGGEEECCCCCS
T ss_pred HHHHHhCCCEEEeCC-CccccccccccccccccccCCCHHHHHHHHHHHHHhCCCCeEEEeCCCCC
Confidence 443222345666653 132222 1233455566888888888899999999996
No 76
>3pnz_A Phosphotriesterase family protein; amidohydrolase fold; HET: KCX; 1.60A {Listeria monocytogenes serotype 4b strorganism_taxid} SCOP: c.1.9.0
Probab=44.52 E-value=1.5e+02 Score=31.45 Aligned_cols=90 Identities=13% Similarity=0.021 Sum_probs=53.6
Q ss_pred eEEEEeCCC-CchhHHHHHHcCCCc--EEEEecC-C-CChhhHHHhhhcccCCCeEeeeeecCCCCCCCCHHHHHHHHHH
Q 003819 671 QVHTHMCYS-NFNDIIHSIMDMDAD--VITIENS-R-SDEKLLSVFREGVKYRAGIGPGVYDIHSPRIPSTEEIADRINK 745 (793)
Q Consensus 671 ~I~lH~C~g-~~~~i~~~l~~l~~D--~isiE~~-r-~~~~~L~~~~~~~~~~~~i~~GVvD~~s~~ves~eev~~~i~~ 745 (793)
.|++|+-.| ...+.++.|.+.+++ .+.+-.+ + .+.+....+.+ .+-.|+++-+-.-+ ..+-++-.+.+.+
T Consensus 183 PViiH~r~g~~a~~~l~iL~e~~~~~~~vvi~H~~~s~~~e~a~~~l~---~G~~i~~~g~~t~~--~~~~~~~~~~l~~ 257 (330)
T 3pnz_A 183 PIHSHTEAGTMALEQIEILKQENIPLEYLSIGHMDRNLDPYYHKQVAK---TGAFMSFDGIAKIK--YAPESARIAAILY 257 (330)
T ss_dssp CEEEECGGGCCHHHHHHHHHHTTCCGGGEEETTGGGSCCHHHHHHHHT---TTCEEEECCTTCTT--TCCHHHHHHHHHH
T ss_pred eEEEeCCCCcChHHHHHHHHHcCCCCCeEEEecCCCCCCHHHHHHHHH---cCcEEEEccCcccC--CCChHHHHHHHHH
Confidence 499996543 233457777766654 4444322 1 34444544544 24456666432111 1123445677888
Q ss_pred HHhhcCCCcEEEcCCCCCCC
Q 003819 746 MLAVLESNILWVNPDCGLKT 765 (793)
Q Consensus 746 al~~i~~~~l~vsPdCGL~t 765 (793)
+++..+.+|+.+++||+..+
T Consensus 258 lv~~g~~drilleTD~p~~~ 277 (330)
T 3pnz_A 258 LVSEGFEDQILVSGDTARKT 277 (330)
T ss_dssp HHHTTCGGGEEECCCCCSGG
T ss_pred HHHcCCCCeEEEeCCCCCCC
Confidence 88888899999999999654
No 77
>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis}
Probab=44.51 E-value=2.7e+02 Score=28.56 Aligned_cols=149 Identities=12% Similarity=0.082 Sum_probs=84.1
Q ss_pred HHHHHHHHHcCCcEEEEcCcccccCCCCCcccHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCchhHHHHHHcCCCcE
Q 003819 616 KDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDADV 695 (793)
Q Consensus 616 ~~ev~~L~~aGv~~IQIDEPal~~~l~l~~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~C~g~~~~i~~~l~~l~~D~ 695 (793)
.+.++.|.++|+++|.+=-|.-...+|... + ..+.++.+.+ . +.+++.+|+ .+. +-++...+.+++.
T Consensus 29 ~~i~~~L~~~Gv~~IE~g~~~~~~~~p~~~-~-------~~e~~~~i~~-~-~~~~v~~l~--~n~-~~i~~a~~~G~~~ 95 (295)
T 1ydn_A 29 IALINRLSDCGYARIEATSFVSPKWVPQLA-D-------SREVMAGIRR-A-DGVRYSVLV--PNM-KGYEAAAAAHADE 95 (295)
T ss_dssp HHHHHHHTTTTCSEEEEEECSCTTTCGGGT-T-------HHHHHHHSCC-C-SSSEEEEEC--SSH-HHHHHHHHTTCSE
T ss_pred HHHHHHHHHcCcCEEEEccCcCcccccccc-C-------HHHHHHHHHh-C-CCCEEEEEe--CCH-HHHHHHHHCCCCE
Confidence 344566788999998885443222222111 1 1233444432 2 356787776 354 4567778899999
Q ss_pred EEEecCCC-----------ChhhHHHhhhc----ccCCCeEe--eeee-cCCCCCCCCHHHHHHHHHHHHhhcCCCcEEE
Q 003819 696 ITIENSRS-----------DEKLLSVFREG----VKYRAGIG--PGVY-DIHSPRIPSTEEIADRINKMLAVLESNILWV 757 (793)
Q Consensus 696 isiE~~r~-----------~~~~L~~~~~~----~~~~~~i~--~GVv-D~~s~~ves~eev~~~i~~al~~i~~~~l~v 757 (793)
+.+..+.| ..+.++.+.+. ...+..+. +|.+ +.-.-..-+++++.+.++.+.+ .|++.+.+
T Consensus 96 V~i~~~~S~~h~~~~~~~~~~e~~~~~~~~v~~a~~~G~~V~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~-~G~d~i~l 174 (295)
T 1ydn_A 96 IAVFISASEGFSKANINCTIAESIERLSPVIGAAINDGLAIRGYVSCVVECPYDGPVTPQAVASVTEQLFS-LGCHEVSL 174 (295)
T ss_dssp EEEEEESCHHHHHHHTSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSEETTTEECCHHHHHHHHHHHHH-HTCSEEEE
T ss_pred EEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEEEecCCcCCCCCHHHHHHHHHHHHh-cCCCEEEe
Confidence 99984332 22233322110 12334443 2221 1000123578999888888776 58899999
Q ss_pred cCCCCCCCCChhHHHHHHHHHHH
Q 003819 758 NPDCGLKTRKYSEVKPALSNMVA 780 (793)
Q Consensus 758 sPdCGL~t~~~~~~~~kL~~mv~ 780 (793)
...-|. .+|.+...-++.+.+
T Consensus 175 ~Dt~G~--~~P~~~~~lv~~l~~ 195 (295)
T 1ydn_A 175 GDTIGR--GTPDTVAAMLDAVLA 195 (295)
T ss_dssp EETTSC--CCHHHHHHHHHHHHT
T ss_pred cCCCCC--cCHHHHHHHHHHHHH
Confidence 977777 467777666666554
No 78
>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A
Probab=43.37 E-value=55 Score=32.65 Aligned_cols=67 Identities=4% Similarity=0.065 Sum_probs=39.4
Q ss_pred HHHHHcCCcEEEEcCcccccCCCCCcccHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCchhHHHHHHcCCCcEEEEe
Q 003819 620 EDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDADVITIE 699 (793)
Q Consensus 620 ~~L~~aGv~~IQIDEPal~~~l~l~~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~C~g~~~~i~~~l~~l~~D~isiE 699 (793)
+.++++|+++|++++..-... + ... + ..+..++.. . ...+.+|.--.+.++ ++.+.++++|.+.+-
T Consensus 39 ~~~~~~Gad~i~v~~~d~~~~-~-~~~----~--~~i~~i~~~---~--~ipv~v~ggI~~~~~-~~~~l~~Gad~V~lg 104 (244)
T 1vzw_A 39 LAWQRSGAEWLHLVDLDAAFG-T-GDN----R--ALIAEVAQA---M--DIKVELSGGIRDDDT-LAAALATGCTRVNLG 104 (244)
T ss_dssp HHHHHTTCSEEEEEEHHHHHT-S-CCC----H--HHHHHHHHH---C--SSEEEEESSCCSHHH-HHHHHHTTCSEEEEC
T ss_pred HHHHHcCCCEEEEecCchhhc-C-CCh----H--HHHHHHHHh---c--CCcEEEECCcCCHHH-HHHHHHcCCCEEEEC
Confidence 567789999999987332210 0 000 1 223333332 2 245777755445444 777788999999987
Q ss_pred c
Q 003819 700 N 700 (793)
Q Consensus 700 ~ 700 (793)
.
T Consensus 105 ~ 105 (244)
T 1vzw_A 105 T 105 (244)
T ss_dssp H
T ss_pred c
Confidence 4
No 79
>2ffi_A 2-pyrone-4,6-dicarboxylic acid hydrolase, putativ; TIM-barrel protein., structural genomics, PSI, protein struc initiative; 2.61A {Pseudomonas putida} SCOP: c.1.9.15
Probab=41.74 E-value=2e+02 Score=28.78 Aligned_cols=108 Identities=8% Similarity=-0.012 Sum_probs=57.5
Q ss_pred CeEEEEeCCCCchhHHHHHHcCCCcEEEEe-cCCCCh------hhHHHhhhcccCCC-eEeeeeecCCCCC-CCCHHHHH
Q 003819 670 TQVHTHMCYSNFNDIIHSIMDMDADVITIE-NSRSDE------KLLSVFREGVKYRA-GIGPGVYDIHSPR-IPSTEEIA 740 (793)
Q Consensus 670 ~~I~lH~C~g~~~~i~~~l~~l~~D~isiE-~~r~~~------~~L~~~~~~~~~~~-~i~~GVvD~~s~~-ves~eev~ 740 (793)
..|.+|+-.+.+.++...+.+.+. .+.+. ...... ..++.+.+....++ .+.++-+-..+.. -.+.....
T Consensus 138 lpv~iH~~~~~~~~~~~~~~~~pl-~~vi~H~g~~~~~~~~~~~~~~~~~~l~~~~n~y~~~sg~~~~~~~~~~~~~~~~ 216 (288)
T 2ffi_A 138 WHVELHRQVADIPVLVRALQPYGL-DIVIDHFGRPDARRGLGQPGFAELLTLSGRGKVWVKVSGIYRLQGSPEENLAFAR 216 (288)
T ss_dssp CEEEECSCTTTHHHHHHHHTTTTC-CEEESGGGSCCTTSCTTCTTHHHHTTCCCCSCEEEEEECGGGSSSCHHHHHHHHH
T ss_pred CeEEEeechhhHHHHHHHHHHCCC-CEEEECCCCCCCCCCCCChhHHHHHHHHhCCCEEEEeCcchhhccccCCCHHHHH
Confidence 457888765556677777777774 45554 222110 01233333111222 1232211111111 01234455
Q ss_pred HHHHHHHhhcCCCcEEEcCCCCCCCC----ChhHHHHHHHHH
Q 003819 741 DRINKMLAVLESNILWVNPDCGLKTR----KYSEVKPALSNM 778 (793)
Q Consensus 741 ~~i~~al~~i~~~~l~vsPdCGL~t~----~~~~~~~kL~~m 778 (793)
..++.+++.+|++|+...+|+..... ++....+.++.+
T Consensus 217 ~~~~~~~~~~g~drll~gSD~P~~~~~~~~~~~~~~~~~~~~ 258 (288)
T 2ffi_A 217 QALCALEAHYGAERLMWGSDWPHTQHESEVSFGSAVEQFEAL 258 (288)
T ss_dssp HHHHHHHHHTCGGGEEEECCTTCTTCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCceEEecCCCCCCCCCCCCHHHHHHHHHHH
Confidence 77888899999999999999998653 344445555544
No 80
>2h9a_B CO dehydrogenase/acetyl-COA synthase, iron- sulfur protein; heterodimer, beta-alpha-barrels, oxidoreductase; HET: B12; 1.90A {Carboxydothermus hydrogenoformans} PDB: 2ycl_B*
Probab=41.23 E-value=3.4e+02 Score=28.51 Aligned_cols=147 Identities=6% Similarity=-0.002 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHcCCcEEEEcCcccccCCCCCcccHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCc---hhHHHHHHc
Q 003819 614 AIKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNF---NDIIHSIMD 690 (793)
Q Consensus 614 al~~ev~~L~~aGv~~IQIDEPal~~~l~l~~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~C~g~~---~~i~~~l~~ 690 (793)
...+..+.+.+.|+++|-|---+.+.+- ...+.++..+ +++.+...+ + ..|.+--| ||- .++++.-++
T Consensus 75 ~~~~~A~~~v~~GAdiIDIg~~StrP~~--~~vs~eee~~-vV~~v~~~~-~----vplsI~DT-~~~~~~~~V~eaal~ 145 (310)
T 2h9a_B 75 DPVAWAKKCVEYGADIVALRLVSAHPDG--QNRSGAELAE-VCKAVADAI-D----VPLMIIGC-GVEEKDAEIFPVIGE 145 (310)
T ss_dssp CHHHHHHHHHHTTCSEEEEECGGGCTTT--TCCCHHHHHH-HHHHHHHHC-S----SCEEEECC-SCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcEEEEeCccCCCCC--CCCCHHHHHH-HHHHHHHhC-C----ceEEEECC-CCCCCCHHHHHHHHH
Confidence 4455566677999999888754333221 1122333333 555554432 3 33544222 331 357777777
Q ss_pred CCCc---EE-EEecCCCChhhHHHhhhcccCCCeEeeeeecCCCCCCCCHHHHHHHHHHHHhh-cCCCcEEEcCCCCCCC
Q 003819 691 MDAD---VI-TIENSRSDEKLLSVFREGVKYRAGIGPGVYDIHSPRIPSTEEIADRINKMLAV-LESNILWVNPDCGLKT 765 (793)
Q Consensus 691 l~~D---~i-siE~~r~~~~~L~~~~~~~~~~~~i~~GVvD~~s~~ves~eev~~~i~~al~~-i~~~~l~vsPdCGL~t 765 (793)
..++ .| ++-.. ...+.+....+ ++-.+++- |. .+.+.+.++++.+.+. ++++++++.|.+|+..
T Consensus 146 aga~~k~iINdvs~~-~~~~~~~~aa~---~g~~vv~m----~~---~dv~~l~~~~~~a~~~Gi~~e~IilDPg~g~~g 214 (310)
T 2h9a_B 146 ALSGRNCLLSSATKD-NYKPIVATCMV---HGHSVVAS----AP---LDINLSKQLNIMIMEMNLAPNRIIMDPLIGALG 214 (310)
T ss_dssp HTTTSCCEEEEECTT-THHHHHHHHHH---HTCEEEEE----CS---SCHHHHHHHHHHHHTTTCCGGGEEEECCCCCTT
T ss_pred hCCCCCCEEEECCCC-ccHHHHHHHHH---hCCCEEEE----Ch---hHHHHHHHHHHHHHHCCCChhhEEEeCCCcccc
Confidence 7776 22 33322 22334444444 23333332 21 1467777777777764 4558999999999534
Q ss_pred CChhHHHHHHHHHHH
Q 003819 766 RKYSEVKPALSNMVA 780 (793)
Q Consensus 766 ~~~~~~~~kL~~mv~ 780 (793)
-+.+.+...|+.+..
T Consensus 215 ~~~e~~~~~l~~ir~ 229 (310)
T 2h9a_B 215 YGIEYSYSIIERMRL 229 (310)
T ss_dssp TTHHHHHHHHHHHHH
T ss_pred CchHhHHHHHHHHHH
Confidence 344444445555444
No 81
>1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A
Probab=41.21 E-value=66 Score=32.05 Aligned_cols=119 Identities=18% Similarity=0.181 Sum_probs=65.1
Q ss_pred HHHHHHHCCCCEEEeeccccccCCChHHHHHHHHHHHHHHhccCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEEec-
Q 003819 191 VVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLI- 269 (793)
Q Consensus 191 ~l~~L~~aG~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~lp~Vd~l~lD~~- 269 (793)
.++.+.++|+++||+-++.-.........+.+++ +. .. .+++++..+..+. .+ +..+.+.. +|++++--.
T Consensus 35 ~a~~~~~~Gad~i~v~d~~~~~~~~~~~~~~i~~----i~-~~-~ipvi~~Ggi~~~-~~-~~~~~~~G-ad~V~lg~~~ 105 (241)
T 1qo2_A 35 LVEKLIEEGFTLIHVVDLSNAIENSGENLPVLEK----LS-EF-AEHIQIGGGIRSL-DY-AEKLRKLG-YRRQIVSSKV 105 (241)
T ss_dssp HHHHHHHTTCCCEEEEEHHHHHHCCCTTHHHHHH----GG-GG-GGGEEEESSCCSH-HH-HHHHHHTT-CCEEEECHHH
T ss_pred HHHHHHHcCCCEEEEecccccccCCchhHHHHHH----HH-hc-CCcEEEECCCCCH-HH-HHHHHHCC-CCEEEECchH
Confidence 4455668999999998865431111112333332 32 21 3567777666554 43 45566678 999988643
Q ss_pred -cCCCChhhHhhhCCCCCEEEEEEeeCC------CCCCC----CHHHHHHHHHHHhhhcCCCcEEEeC
Q 003819 270 -RGTKTLDLIKTEFPLGKYLFAGVVDGR------NIWAN----DLASSLTTLQDLAGTVGKDKVVVST 326 (793)
Q Consensus 270 -~~~~~l~~l~~~~p~~k~l~lGvVdgr------n~w~e----d~~~i~~~i~~~~~~v~~e~l~vsp 326 (793)
.++..+..+ +.++ ..+.+|+ |.| +.|.+ +..+. ++++.+ .|.+.+++++
T Consensus 106 l~~p~~~~~~-~~~g--~~i~~~~-d~~~~~v~~~g~~~~~~~~~~e~---~~~~~~-~G~~~i~~t~ 165 (241)
T 1qo2_A 106 LEDPSFLKSL-REID--VEPVFSL-DTRGGRVAFKGWLAEEEIDPVSL---LKRLKE-YGLEEIVHTE 165 (241)
T ss_dssp HHCTTHHHHH-HTTT--CEEEEEE-EEETTEECCTTCSSCSCCCHHHH---HHHHHT-TTCCEEEEEE
T ss_pred hhChHHHHHH-HHcC--CcEEEEE-EecCCEEEECCceecCCCCHHHH---HHHHHh-CCCCEEEEEe
Confidence 234445555 4464 3455554 333 34554 44454 333333 5667777754
No 82
>3k2g_A Resiniferatoxin-binding, phosphotriesterase- related protein; TIM barrel, binuclear zinc, protein structure initiative II (PSI II); 1.80A {Rhodobacter sphaeroides 2}
Probab=41.01 E-value=72 Score=34.39 Aligned_cols=115 Identities=10% Similarity=0.101 Sum_probs=62.6
Q ss_pred CChHHHHHHHHHHHHHHhccCCCcEEEEec-cCCCchhhHHHHhcCCC-ccEEEEEeccCCC-ChhhHhhhCCCCCEEEE
Q 003819 214 LDSHKLQAFSDAYSELQSSLSGLNVLIETY-FADVPAETYKILTSLKG-VTGFGFDLIRGTK-TLDLIKTEFPLGKYLFA 290 (793)
Q Consensus 214 ~~~~~~~~~~~~y~~l~~~~~~~~i~l~ty-fg~~~~~~~~~l~~lp~-Vd~l~lD~~~~~~-~l~~l~~~~p~~k~l~l 290 (793)
....+.+.|+...+. +... +..|++|+- -+.-..+.++.|.+... ...+.+--....+ +++..++.+..+-.|++
T Consensus 184 ~t~~q~~~f~aq~~~-A~~~-glPV~iH~~gr~~a~~e~l~iL~e~g~~~~~vvi~H~~~s~~~~e~a~~~l~~G~~I~f 261 (364)
T 3k2g_A 184 FTAEEEKSLRGAARA-QVRT-GLPLMVHLPGWFRLAHRVLDLVEEEGADLRHTVLCHMNPSHMDPVYQATLAQRGAFLEF 261 (364)
T ss_dssp CCHHHHHHHHHHHHH-HHHH-CCCEEEECCTTSCCHHHHHHHHHHTTCCGGGEEECCCGGGTTCHHHHHHHHHHTCEEEE
T ss_pred CCHHHHHHHHHHHHH-HHHH-CCeEEEecCCCCccHHHHHHHHHHcCCCCCceEEECCCCCCCCHHHHHHHHhCCcEEEe
Confidence 344555566555443 2222 356889972 33332667777765430 3333322111112 44444432222446666
Q ss_pred EEeeCCC-------CCCCCHHHHHHHHHHHhhhcCCCcEEEeCCCCCc
Q 003819 291 GVVDGRN-------IWANDLASSLTTLQDLAGTVGKDKVVVSTSCSLL 331 (793)
Q Consensus 291 GvVdgrn-------~w~ed~~~i~~~i~~~~~~v~~e~l~vspsCgL~ 331 (793)
+-+ |.. .|..+-++-.+.|+++.+..+.+||.|++||+.+
T Consensus 262 ~g~-gt~~~f~~~~~~~~~d~~ra~~l~~lv~~gp~drilleTD~p~~ 308 (364)
T 3k2g_A 262 DMI-GMDFFYADQGVQCPSDDEVARAILGLADHGYLDRILLSHDVFVK 308 (364)
T ss_dssp CCT-TCCCEETTTTEECCCHHHHHHHHHHHHHTTCGGGEEECCCCCSG
T ss_pred cCC-cccccccccccccccHHHHHHHHHHHHHhCCcccEEEeCCCCCC
Confidence 643 221 1233445677788888888888999999999874
No 83
>3pnz_A Phosphotriesterase family protein; amidohydrolase fold; HET: KCX; 1.60A {Listeria monocytogenes serotype 4b strorganism_taxid} SCOP: c.1.9.0
Probab=39.63 E-value=1.6e+02 Score=31.15 Aligned_cols=146 Identities=10% Similarity=-0.002 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHHH-HHCCCCEEEeecccccc-CCChHHHHHHHHHHHHHHhccCCCcEEEEeccCCCchhhHHHHhcCC
Q 003819 182 DKIIPVYKEVVAEL-KAAGATWIQFDEPTLVL-DLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLK 259 (793)
Q Consensus 182 ~~L~~~Y~~~l~~L-~~aG~~~VQiDEP~L~~-d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~lp 259 (793)
++|++.+..++.+. ..-|++-=.| |-.+.. ...+.+.+.|+...+.- ... +..|++|+--|.-..+.++.|.+..
T Consensus 129 e~l~~~~~~ei~~Gi~~t~vkaGvI-EiGld~~~~~~~q~~~f~aq~~~A-~~~-glPViiH~r~g~~a~~~l~iL~e~~ 205 (330)
T 3pnz_A 129 DKLTEFVVNEVENGLEGTPYKAGQV-KFGTGYNMITPLEEKTIRAVARAH-HET-KAPIHSHTEAGTMALEQIEILKQEN 205 (330)
T ss_dssp HHHHHHHHHHHHTCSTTSSCCEEEE-EEECBTTBCCHHHHHHHHHHHHHH-HHH-CCCEEEECGGGCCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhCCCcCcCcCeE-EEEcCCCCCCHHHHHHHHHHHHHH-HHH-CCeEEEeCCCCcChHHHHHHHHHcC
Confidence 56666666666543 2334443222 433332 23344555665554432 222 3568999865421134577776543
Q ss_pred C-ccEEEEEeccCCCChhhHhhhCCCCCEEEEEEeeCCCCCCCCHHHHHHHHHHHhhhcCCCcEEEeCCCCCcc
Q 003819 260 G-VTGFGFDLIRGTKTLDLIKTEFPLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVSTSCSLLH 332 (793)
Q Consensus 260 ~-Vd~l~lD~~~~~~~l~~l~~~~p~~k~l~lGvVdgrn~w~ed~~~i~~~i~~~~~~v~~e~l~vspsCgL~h 332 (793)
. ...+.+......++++..++.+..+-.|+++-+ +...... -++..+.++++.+..+.|||.+++||+..+
T Consensus 206 ~~~~~vvi~H~~~s~~~e~a~~~l~~G~~i~~~g~-~t~~~~~-~~~~~~~l~~lv~~g~~drilleTD~p~~~ 277 (330)
T 3pnz_A 206 IPLEYLSIGHMDRNLDPYYHKQVAKTGAFMSFDGI-AKIKYAP-ESARIAAILYLVSEGFEDQILVSGDTARKT 277 (330)
T ss_dssp CCGGGEEETTGGGSCCHHHHHHHHTTTCEEEECCT-TCTTTCC-HHHHHHHHHHHHHTTCGGGEEECCCCCSGG
T ss_pred CCCCeEEEecCCCCCCHHHHHHHHHcCcEEEEccC-cccCCCC-hHHHHHHHHHHHHcCCCCeEEEeCCCCCCC
Confidence 0 345544433212455555442334556666643 1111111 244556677777777789999999999753
No 84
>3gg7_A Uncharacterized metalloprotein; structural genomics, unknown function, plasmid, PSI-2, protein structure initiative; 1.50A {Deinococcus radiodurans} SCOP: c.1.9.0
Probab=39.57 E-value=1.2e+02 Score=30.84 Aligned_cols=63 Identities=11% Similarity=0.102 Sum_probs=36.3
Q ss_pred HHHHHhhhcCCCcEEEeCCCCCccccc-ccccccCCcHHHHhHHHHHHHHHHHHHHHHHHccCCccHHHHHHHHHHH
Q 003819 309 TLQDLAGTVGKDKVVVSTSCSLLHTAV-DLENETKLDQEIKSWLAFAAQKVVEVNALAKALSGQKDEAYFSSNAAAQ 384 (793)
Q Consensus 309 ~i~~~~~~v~~e~l~vspsCgL~hvP~-~~~~E~~l~~~~~~~lafA~qKl~El~~l~~~l~~~~~~~~~~~~~~~~ 384 (793)
.++++.+.+|.|||.+-|||+.+ |+ ...+| |. .+....++++++..+ +.......+..|...+
T Consensus 178 ~~~~~v~~ip~drlLlETD~P~~--~~rg~~n~---P~----~v~~v~~~iA~~~g~----~~ee~~~~~~~N~~~l 241 (254)
T 3gg7_A 178 KGAALIRSMPRDRVLTETDGPFL--ELDGQAAL---PW----DVKSVVEGLSKIWQI----PASEVERIVKENVSRL 241 (254)
T ss_dssp HHHHHHHHSCGGGEEECCCTTTS--EETTEECC---GG----GHHHHHHHHHHHHTS----CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCeEEEeCCCCcc--ccCCCCCC---HH----HHHHHHHHHHHHhCc----CHHHHHHHHHHHHHHH
Confidence 45677778899999999999986 43 21222 22 234456666666332 1122234455565544
No 85
>3tn4_A Phosphotriesterase; lactonase, hydrolase; HET: KCX; 1.50A {Geobacillus kaustophilus} PDB: 3tnb_A* 3tn3_A* 3tn5_A* 3tn6_A* 3ojg_A* 3orw_A* 3f4c_A* 3f4d_A*
Probab=39.51 E-value=2e+02 Score=30.88 Aligned_cols=90 Identities=17% Similarity=0.144 Sum_probs=54.1
Q ss_pred CeEEEEeCCCCc-hhHHHHHHcCCCc--EEEEec--CCCChhhHHHhhhcccCCCeEeeeeecC-CCCCCCCHHHHHHHH
Q 003819 670 TQVHTHMCYSNF-NDIIHSIMDMDAD--VITIEN--SRSDEKLLSVFREGVKYRAGIGPGVYDI-HSPRIPSTEEIADRI 743 (793)
Q Consensus 670 ~~I~lH~C~g~~-~~i~~~l~~l~~D--~isiE~--~r~~~~~L~~~~~~~~~~~~i~~GVvD~-~s~~ves~eev~~~i 743 (793)
..|.+|+-.+.- .+.++.|.+.++| .+.+-- -..+.+.++.+.+ .+-.|++.-+-. -....++-++-++.|
T Consensus 207 ~Pv~iHt~~~~~~~e~l~iL~eeG~~~~~vvi~H~~~~~d~~~~~~~l~---~G~yl~fD~iG~~~~~~~p~d~~r~~~l 283 (360)
T 3tn4_A 207 AVIITHTQEGTMGPEQAAYLLEHGADPKKIVIGHMCDNTDPDYHRKTLA---YGVYIAFDRFGIQGMVGAPTDEERVRTL 283 (360)
T ss_dssp CEEEEECSTTCCHHHHHHHHHHTTCCGGGEEECCGGGCCCHHHHHHHHT---TTCEEEECCTTCCCSTTCCCHHHHHHHH
T ss_pred CcEEEEcCcccCCHHHHHHHHHcCCCCCceEEEcCCCCCCHHHHHHHHH---cCCEEEEcccccccccCCCChHHHHHHH
Confidence 569999876542 2456777776664 444431 1224444444444 233455432211 112235567777889
Q ss_pred HHHHhhcCCCcEEEcCCCC
Q 003819 744 NKMLAVLESNILWVNPDCG 762 (793)
Q Consensus 744 ~~al~~i~~~~l~vsPdCG 762 (793)
.++++..+.+|+.+++||+
T Consensus 284 ~~lv~~g~~drILLstDa~ 302 (360)
T 3tn4_A 284 LALLRDGYEKQIMLSHDTV 302 (360)
T ss_dssp HHHHHTTCGGGEEECCCCE
T ss_pred HHHHHhcCcceEEEecCCC
Confidence 9999998999999999993
No 86
>1qtw_A Endonuclease IV; DNA repair enzyme, TIM barrel, trinuclear Zn cluster, hydrolase; 1.02A {Escherichia coli} SCOP: c.1.15.1 PDB: 1qum_A* 2nqh_A 2nqj_A* 2nq9_A*
Probab=38.92 E-value=1.8e+02 Score=28.94 Aligned_cols=114 Identities=11% Similarity=0.142 Sum_probs=0.0
Q ss_pred CeEEEE-eCCCCchhHHHHHHcCCCcEEEEecCCCCh---------hhHHHhhhcccCCCeEeeeeecCCCCCC-----C
Q 003819 670 TQVHTH-MCYSNFNDIIHSIMDMDADVITIENSRSDE---------KLLSVFREGVKYRAGIGPGVYDIHSPRI-----P 734 (793)
Q Consensus 670 ~~I~lH-~C~g~~~~i~~~l~~l~~D~isiE~~r~~~---------~~L~~~~~~~~~~~~i~~GVvD~~s~~v-----e 734 (793)
++|+.| .+++++.+.++.+.++++|+|-+ ...+.. +.++.+++ .-...+|-+..+.+|.+.. +
T Consensus 2 m~~G~~~~~~~~l~~~l~~~~~~G~~~vEl-~~~~~~~~~~~~~~~~~~~~~~~-~l~~~gl~~~~~~~~~~~~~~l~~~ 79 (285)
T 1qtw_A 2 KYIGAHVSAAGGLANAAIRAAEIDATAFAL-FTKNQRQWRAAPLTTQTIDEFKA-ACEKYHYTSAQILPHDSYLINLGHP 79 (285)
T ss_dssp CEEEEECCCTTCHHHHHHHHHHTTCSEEEC-CSSCSSCSSCCCCCHHHHHHHHH-HHHHTTCCGGGBCCBCCTTCCTTCS
T ss_pred CceeEEeccccCHHHHHHHHHHcCCCEEEe-eCCCCCcCcCCCCCHHHHHHHHH-HHHHcCCCceeEEecCCcccccCCC
Q ss_pred CHH------HHHHHHHHHHhhcCCCcEEEcCCCCCCCCChhHHHHHHHHHHHHHHHHHHH
Q 003819 735 STE------EIADRINKMLAVLESNILWVNPDCGLKTRKYSEVKPALSNMVAAAKLLRTQ 788 (793)
Q Consensus 735 s~e------ev~~~i~~al~~i~~~~l~vsPdCGL~t~~~~~~~~kL~~mv~aa~~~r~~ 788 (793)
+++ +...+..+.+..+|...+.+.|.......+. ...++.+++.-+.+-++
T Consensus 80 ~~~~r~~~~~~~~~~i~~A~~lGa~~v~~~~g~~~~~~~~---~~~~~~~~~~l~~l~a~ 136 (285)
T 1qtw_A 80 VTEALEKSRDAFIDEMQRCEQLGLSLLNFHPGSHLMQISE---EDCLARIAESINIALDK 136 (285)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTTCCEEEECCCBCTTTSCH---HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCEEEECcCCCCCCCCH---HHHHHHHHHHHHHHHhc
No 87
>3ovg_A Amidohydrolase; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, NYSGXRC, HAD, PSI; HET: KCX; 2.06A {Mycoplasma synoviae} PDB: 3msr_A*
Probab=38.75 E-value=3.2e+02 Score=29.25 Aligned_cols=111 Identities=14% Similarity=0.084 Sum_probs=62.0
Q ss_pred hHHHHHHHHHHHHHHhccCCCcEEEEeccCCCchhhHHHHhc--CCCccEEEEEeccCCCChhhHhhhC-CCCCEEEEEE
Q 003819 216 SHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTS--LKGVTGFGFDLIRGTKTLDLIKTEF-PLGKYLFAGV 292 (793)
Q Consensus 216 ~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~--lp~Vd~l~lD~~~~~~~l~~l~~~~-p~~k~l~lGv 292 (793)
+.+.+.|+...+. +... +..|++|+-.|.-..+.++.|.+ .| ..++.+....+.++++...+.+ ..+-.|+++=
T Consensus 165 ~~Q~~~f~aq~~~-A~e~-glPViiH~r~gr~a~d~l~iL~e~g~~-~~~vvi~H~~~~~~~~~a~~~l~~~G~yI~f~g 241 (363)
T 3ovg_A 165 RLELKALEVAART-SILT-GCPILVHTQLGTMALEVAKHLIGFGAN-PDKIQISHLNKNPDKYYYEKVIKETGVTLCFDG 241 (363)
T ss_dssp HHHHHHHHHHHHH-HHHH-CCCEEEEEETTCSHHHHHHHHHHHTCC-GGGEEEECGGGSCCHHHHHHHHHHHCCEEEECC
T ss_pred HHHHHHHHHHHHH-HHHh-CCEEEEeCCCCCCHHHHHHHHHhcCCC-CCcEEEEcCCCCCCHHHHHHHHHHCCcEEEECC
Confidence 3455566555443 2222 35689998654211356666654 45 5566666655334443322212 1244566653
Q ss_pred eeCCCCCCCCHHHHHHHHHHHhhhcCCCcEEEeCCCCCc
Q 003819 293 VDGRNIWANDLASSLTTLQDLAGTVGKDKVVVSTSCSLL 331 (793)
Q Consensus 293 Vdgrn~w~ed~~~i~~~i~~~~~~v~~e~l~vspsCgL~ 331 (793)
+ ++..+..| ++-.+.|+++.+..+.|||.+++||+.+
T Consensus 242 ~-~~~~~~~~-~~ra~~l~~lv~~~p~drILleTDap~~ 278 (363)
T 3ovg_A 242 P-DRVKYYPD-SLLAENIKYLVDKGLQKHITLSLDAGRI 278 (363)
T ss_dssp T-TCTTTCCH-HHHHHHHHHHHHTTCGGGEEECCCCCSG
T ss_pred e-eccccCCh-hHHHHHHHHHHHhcCCCeEEEeCCCCCC
Confidence 2 12223222 3456678888888888999999999865
No 88
>2ffi_A 2-pyrone-4,6-dicarboxylic acid hydrolase, putativ; TIM-barrel protein., structural genomics, PSI, protein struc initiative; 2.61A {Pseudomonas putida} SCOP: c.1.9.15
Probab=37.29 E-value=1.8e+02 Score=29.13 Aligned_cols=135 Identities=12% Similarity=0.096 Sum_probs=70.7
Q ss_pred HHHHHHHHCCCCEEEeeccccccCCChHHHHHHHHHHHHHHhccCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEEec
Q 003819 190 EVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLI 269 (793)
Q Consensus 190 ~~l~~L~~aG~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~lp~Vd~l~lD~~ 269 (793)
++|+++.+.|+.=|.+-- ....+. .-....+...|+.+.+. +..+.+|+.-... ......+.+.| +. +-++-.
T Consensus 96 ~el~~~~~~g~~Gi~~~~-~~~~~~-~~~~~~~~~~~~~a~~~--~lpv~iH~~~~~~-~~~~~~~~~~p-l~-~vi~H~ 168 (288)
T 2ffi_A 96 ATLAEMARLGVRGVRLNL-MGQDMP-DLTGAQWRPLLERIGEQ--GWHVELHRQVADI-PVLVRALQPYG-LD-IVIDHF 168 (288)
T ss_dssp HHHHHHHTTTCCEEECCC-SSSCCC-CTTSTTTHHHHHHHHHH--TCEEEECSCTTTH-HHHHHHHTTTT-CC-EEESGG
T ss_pred HHHHHHHHCCCeEEEEec-ccCCCC-CcccHHHHHHHHHHHHC--CCeEEEeechhhH-HHHHHHHHHCC-CC-EEEECC
Confidence 567777778988775531 111001 11123455555555432 3567777654334 45666777778 65 444322
Q ss_pred cCCC--------ChhhHhhhCCCCCEEEEEE--eeCCCCC-CCCHHHHHHHHHHHhhhcCCCcEEEeCCCCCcc
Q 003819 270 RGTK--------TLDLIKTEFPLGKYLFAGV--VDGRNIW-ANDLASSLTTLQDLAGTVGKDKVVVSTSCSLLH 332 (793)
Q Consensus 270 ~~~~--------~l~~l~~~~p~~k~l~lGv--Vdgrn~w-~ed~~~i~~~i~~~~~~v~~e~l~vspsCgL~h 332 (793)
.... .++.+.. +.....+.+++ +-..+.+ ..+.......++.+.+.+|++||..+++++...
T Consensus 169 g~~~~~~~~~~~~~~~~~~-l~~~~n~y~~~sg~~~~~~~~~~~~~~~~~~~~~~~~~~g~drll~gSD~P~~~ 241 (288)
T 2ffi_A 169 GRPDARRGLGQPGFAELLT-LSGRGKVWVKVSGIYRLQGSPEENLAFARQALCALEAHYGAERLMWGSDWPHTQ 241 (288)
T ss_dssp GSCCTTSCTTCTTHHHHTT-CCCCSCEEEEEECGGGSSSCHHHHHHHHHHHHHHHHHHTCGGGEEEECCTTCTT
T ss_pred CCCCCCCCCCChhHHHHHH-HHhCCCEEEEeCcchhhccccCCCHHHHHHHHHHHHHHhCCCceEEecCCCCCC
Confidence 2111 1344433 32222455544 1111111 111234446688888888999999999998753
No 89
>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A
Probab=36.73 E-value=3.4e+02 Score=27.18 Aligned_cols=24 Identities=17% Similarity=0.296 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHcCCcEEEEcCccc
Q 003819 614 AIKDEVEDLEKAGITVIQIDEAAL 637 (793)
Q Consensus 614 al~~ev~~L~~aGv~~IQIDEPal 637 (793)
...+.++.|+++|+++|+++-|.-
T Consensus 33 ~~~~~~~~l~~~Gad~ielg~p~~ 56 (262)
T 1rd5_A 33 TTAEALRLLDGCGADVIELGVPCS 56 (262)
T ss_dssp HHHHHHHHHHHTTCSSEEEECCCS
T ss_pred HHHHHHHHHHHcCCCEEEECCCCC
Confidence 344567889999999999998863
No 90
>3ovg_A Amidohydrolase; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, NYSGXRC, HAD, PSI; HET: KCX; 2.06A {Mycoplasma synoviae} PDB: 3msr_A*
Probab=35.73 E-value=2.3e+02 Score=30.39 Aligned_cols=90 Identities=13% Similarity=0.077 Sum_probs=51.3
Q ss_pred eEEEEeCCC-CchhHHHHHHcCCC--cEEEEecCC--CChhhHHHhh-hcccCCCeEeeeeecCCCCCCCCHHHHHHHHH
Q 003819 671 QVHTHMCYS-NFNDIIHSIMDMDA--DVITIENSR--SDEKLLSVFR-EGVKYRAGIGPGVYDIHSPRIPSTEEIADRIN 744 (793)
Q Consensus 671 ~I~lH~C~g-~~~~i~~~l~~l~~--D~isiE~~r--~~~~~L~~~~-~~~~~~~~i~~GVvD~~s~~ves~eev~~~i~ 744 (793)
.|++|+-.| +-.++++.|.+.++ ..+.+-.+. .+.+..+.+. + .+-.|+++-+-. ..+. +-+.-.+.++
T Consensus 184 PViiH~r~gr~a~d~l~iL~e~g~~~~~vvi~H~~~~~~~~~a~~~l~~---~G~yI~f~g~~~-~~~~-~~~~ra~~l~ 258 (363)
T 3ovg_A 184 PILVHTQLGTMALEVAKHLIGFGANPDKIQISHLNKNPDKYYYEKVIKE---TGVTLCFDGPDR-VKYY-PDSLLAENIK 258 (363)
T ss_dssp CEEEEEETTCSHHHHHHHHHHHTCCGGGEEEECGGGSCCHHHHHHHHHH---HCCEEEECCTTC-TTTC-CHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHhcCCCCCcEEEEcCCCCCCHHHHHHHHHH---CCcEEEECCeec-cccC-ChhHHHHHHH
Confidence 489997544 22367777766444 344443222 2333233333 3 134566653321 1111 2344667888
Q ss_pred HHHhhcCCCcEEEcCCCCCCC
Q 003819 745 KMLAVLESNILWVNPDCGLKT 765 (793)
Q Consensus 745 ~al~~i~~~~l~vsPdCGL~t 765 (793)
++++.++.+|+.+++||+.++
T Consensus 259 ~lv~~~p~drILleTDap~~~ 279 (363)
T 3ovg_A 259 YLVDKGLQKHITLSLDAGRIL 279 (363)
T ss_dssp HHHHTTCGGGEEECCCCCSGG
T ss_pred HHHHhcCCCeEEEeCCCCCCc
Confidence 889989999999999998543
No 91
>3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN; 1.03A {Pseudomonas putida} SCOP: c.1.4.0 PDB: 3l5m_A* 3n19_B* 3n16_A* 3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A* 2h8x_A*
Probab=35.38 E-value=2e+02 Score=30.77 Aligned_cols=93 Identities=10% Similarity=0.095 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHHHHHcCCcEEEEcCcc-------cccCCCCC----cccHHHHHHHHHHHHHHHhcCCCCCCeEEEEe
Q 003819 608 CYQIALAIKDEVEDLEKAGITVIQIDEAA-------LREGLPLR----KSEQDFYLKWAVHSFRITNCGVQDTTQVHTHM 676 (793)
Q Consensus 608 ~~~lA~al~~ev~~L~~aGv~~IQIDEPa-------l~~~l~l~----~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~ 676 (793)
..++...+.+-.+...++|++.|+|.--- +......+ ..+.+.-.+++.+.++.+-+.++++..|.+=+
T Consensus 153 I~~ii~~f~~aA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~aVr~avg~d~pV~vRi 232 (363)
T 3l5l_A 153 IARVKQDFVDAARRARDAGFEWIELHFAHGYLGQSFFSEHSNKRTDAYGGSFDNRSRFLLETLAAVREVWPENLPLTARF 232 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHTTSCTTSCEEEEE
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHccCCCcCCCCcccCcCHHHHHHHHHHHHHHHHHHcCCCceEEEEe
Confidence 34566777777778888999999999531 11111111 11234445566666666666665444344433
Q ss_pred CC------C-----CchhHHHHHHcCCCcEEEEec
Q 003819 677 CY------S-----NFNDIIHSIMDMDADVITIEN 700 (793)
Q Consensus 677 C~------g-----~~~~i~~~l~~l~~D~isiE~ 700 (793)
.- | ++..+...+.+.++|.|++-.
T Consensus 233 s~~~~~~~G~~~~~~~~~la~~L~~~Gvd~i~vs~ 267 (363)
T 3l5l_A 233 GVLEYDGRDEQTLEESIELARRFKAGGLDLLSVSV 267 (363)
T ss_dssp EEECSSSCHHHHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred cchhcCCCCCCCHHHHHHHHHHHHHcCCCEEEEec
Confidence 31 1 233567778889999999863
No 92
>3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A*
Probab=34.65 E-value=2.8e+02 Score=29.41 Aligned_cols=93 Identities=12% Similarity=0.143 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHHHcCCcEEEEcCcc-------cccCCCCC----cccHHHHHHHHHHHHHHHhcCCCCCCeEEEEe
Q 003819 608 CYQIALAIKDEVEDLEKAGITVIQIDEAA-------LREGLPLR----KSEQDFYLKWAVHSFRITNCGVQDTTQVHTHM 676 (793)
Q Consensus 608 ~~~lA~al~~ev~~L~~aGv~~IQIDEPa-------l~~~l~l~----~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~ 676 (793)
..++...+.+-.+.+.++|++.|+|.--- |......+ ..+...-.+++.+.++.+-+.++++..|.+-+
T Consensus 147 I~~ii~~f~~aA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~aVR~avG~d~pV~vRl 226 (349)
T 3hgj_A 147 MERILQAFVEGARRALRAGFQVIELHMAHGYLLSSFLSPLSNQRTDAYGGSLENRMRFPLQVAQAVREVVPRELPLFVRV 226 (349)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHSCTTSCEEEEE
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEECCccchHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHHHHHHHhcCCceEEEEe
Confidence 35566777777778888999999998632 01100011 11233333444444444444454443344433
Q ss_pred CC------C----CchhHHHHHHcCCCcEEEEec
Q 003819 677 CY------S----NFNDIIHSIMDMDADVITIEN 700 (793)
Q Consensus 677 C~------g----~~~~i~~~l~~l~~D~isiE~ 700 (793)
.- | ++..+...+.+.++|.|++-.
T Consensus 227 s~~~~~~~g~~~~~~~~la~~L~~~Gvd~i~vs~ 260 (349)
T 3hgj_A 227 SATDWGEGGWSLEDTLAFARRLKELGVDLLDCSS 260 (349)
T ss_dssp ESCCCSTTSCCHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred ccccccCCCCCHHHHHHHHHHHHHcCCCEEEEec
Confidence 32 1 133566778889999999863
No 93
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Probab=34.52 E-value=55 Score=32.75 Aligned_cols=69 Identities=9% Similarity=0.058 Sum_probs=42.6
Q ss_pred HHHHHCCCCEEEeeccccccCCChHHHHHHHHHHHHHHhccCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEEec
Q 003819 193 AELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLI 269 (793)
Q Consensus 193 ~~L~~aG~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~lp~Vd~l~lD~~ 269 (793)
+.+.++|+++|++.++.-... ......+....+.+.. .+.+++..+..+. ++ ++.+.+.. +|++++--.
T Consensus 37 ~~~~~~Gad~i~v~d~~~~~~----~~~~~~~~i~~i~~~~-~ipvi~~ggI~~~-~~-~~~~~~~G-ad~V~lg~~ 105 (253)
T 1thf_D 37 KFYSEIGIDELVFLDITASVE----KRKTMLELVEKVAEQI-DIPFTVGGGIHDF-ET-ASELILRG-ADKVSINTA 105 (253)
T ss_dssp HHHHHTTCCEEEEEESSCSSS----HHHHHHHHHHHHHTTC-CSCEEEESSCCSH-HH-HHHHHHTT-CSEEEESHH
T ss_pred HHHHHcCCCEEEEECCchhhc----CCcccHHHHHHHHHhC-CCCEEEeCCCCCH-HH-HHHHHHcC-CCEEEEChH
Confidence 566789999999998643211 1122223334444433 3678888766555 44 56666778 999988654
No 94
>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2
Probab=34.00 E-value=1.3e+02 Score=30.06 Aligned_cols=67 Identities=15% Similarity=0.250 Sum_probs=37.5
Q ss_pred HHHHHHHHCCCCEEEeec------cccccCCChHHHHHHHHHHHHHHhccC-CCcEEEEeccCCCchhhHHHHhcCCCcc
Q 003819 190 EVVAELKAAGATWIQFDE------PTLVLDLDSHKLQAFSDAYSELQSSLS-GLNVLIETYFADVPAETYKILTSLKGVT 262 (793)
Q Consensus 190 ~~l~~L~~aG~~~VQiDE------P~L~~d~~~~~~~~~~~~y~~l~~~~~-~~~i~l~tyfg~~~~~~~~~l~~lp~Vd 262 (793)
+.++.+.++|++|||+|. |.+... . +..+.+.+..+ ...+++-++ +. +..++.+.+.. +|
T Consensus 21 ~~i~~~~~~Gad~ihldi~DG~fvp~~~~g--~-------~~v~~lr~~~~~~~~vhlmv~--dp-~~~i~~~~~aG-ad 87 (230)
T 1tqj_A 21 EEIKAVDEAGADWIHVDVMDGRFVPNITIG--P-------LIVDAIRPLTKKTLDVHLMIV--EP-EKYVEDFAKAG-AD 87 (230)
T ss_dssp HHHHHHHHTTCSEEEEEEEBSSSSSCBCBC--H-------HHHHHHGGGCCSEEEEEEESS--SG-GGTHHHHHHHT-CS
T ss_pred HHHHHHHHcCCCEEEEEEEecCCCcchhhh--H-------HHHHHHHhhcCCcEEEEEEcc--CH-HHHHHHHHHcC-CC
Confidence 567778889999999998 222211 1 22233332211 123333332 22 33467788888 99
Q ss_pred EEEEEec
Q 003819 263 GFGFDLI 269 (793)
Q Consensus 263 ~l~lD~~ 269 (793)
++++=..
T Consensus 88 gv~vh~e 94 (230)
T 1tqj_A 88 IISVHVE 94 (230)
T ss_dssp EEEEECS
T ss_pred EEEECcc
Confidence 9966554
No 95
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1
Probab=33.95 E-value=65 Score=31.79 Aligned_cols=71 Identities=14% Similarity=0.172 Sum_probs=41.9
Q ss_pred HHHHHHHHCCCCEEEeeccccccCCChHHHHHHHHHHHHHHhccCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEEe
Q 003819 190 EVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDL 268 (793)
Q Consensus 190 ~~l~~L~~aG~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~lp~Vd~l~lD~ 268 (793)
+.++.+.++|+++|+++++..... . .....+....+.+.. ...++++.+..+. .. ++.+.+.. +|++++--
T Consensus 37 ~~a~~~~~~G~d~i~v~~~~~~~~-~---~~~~~~~i~~i~~~~-~ipvi~~g~i~~~-~~-~~~~~~~G-ad~V~i~~ 107 (253)
T 1h5y_A 37 EMAVRYEEEGADEIAILDITAAPE-G---RATFIDSVKRVAEAV-SIPVLVGGGVRSL-ED-ATTLFRAG-ADKVSVNT 107 (253)
T ss_dssp HHHHHHHHTTCSCEEEEECCCCTT-T---HHHHHHHHHHHHHHC-SSCEEEESSCCSH-HH-HHHHHHHT-CSEEEESH
T ss_pred HHHHHHHHcCCCEEEEEeCCcccc-C---CcccHHHHHHHHHhc-CCCEEEECCCCCH-HH-HHHHHHcC-CCEEEECh
Confidence 455667889999999997653321 1 111122233343332 3567777665555 44 46666777 99988753
No 96
>1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2
Probab=33.94 E-value=1e+02 Score=30.31 Aligned_cols=71 Identities=13% Similarity=0.144 Sum_probs=42.1
Q ss_pred HHHHHHHHCCCCEEEeec---cccccCCChHHHHHHHHHHHHHHhccCCCcEEEEeccCCCchhhHHHHhcCCCccEEEE
Q 003819 190 EVVAELKAAGATWIQFDE---PTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGF 266 (793)
Q Consensus 190 ~~l~~L~~aG~~~VQiDE---P~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~lp~Vd~l~l 266 (793)
+.++.+.++|++|||+|. |+.- ... ...+. ...+.+.. +..+.++.|+.+. .+.++.+.+.. +|++++
T Consensus 27 ~~i~~~~~~G~d~i~l~~~dg~f~~-~~~-~~~~~----i~~l~~~~-~~~~~v~l~vnd~-~~~v~~~~~~G-ad~v~v 97 (230)
T 1rpx_A 27 EQVKAIEQAGCDWIHVDVMDGRFVP-NIT-IGPLV----VDSLRPIT-DLPLDVHLMIVEP-DQRVPDFIKAG-ADIVSV 97 (230)
T ss_dssp HHHHHHHHTTCCCEEEEEEBSSSSS-CBC-CCHHH----HHHHGGGC-CSCEEEEEESSSH-HHHHHHHHHTT-CSEEEE
T ss_pred HHHHHHHHCCCCEEEEeeccCCccc-ccc-cCHHH----HHHHHhcc-CCcEEEEEEecCH-HHHHHHHHHcC-CCEEEE
Confidence 456677889999999974 3311 111 01121 22233322 2356667776654 44577778888 999988
Q ss_pred Eec
Q 003819 267 DLI 269 (793)
Q Consensus 267 D~~ 269 (793)
-..
T Consensus 98 h~~ 100 (230)
T 1rpx_A 98 HCE 100 (230)
T ss_dssp ECS
T ss_pred Eec
Confidence 765
No 97
>4i6k_A Amidohydrolase family protein; enzyme function initiative, isomerase, structural; HET: CIT; 2.28A {Acinetobacter baumannii}
Probab=33.82 E-value=59 Score=33.44 Aligned_cols=135 Identities=10% Similarity=0.024 Sum_probs=74.9
Q ss_pred HHHHHHHHCCCCEEEeeccccccCCChHHHHHHHHHHHHHHhccCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEEec
Q 003819 190 EVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLI 269 (793)
Q Consensus 190 ~~l~~L~~aG~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~lp~Vd~l~lD~~ 269 (793)
++|+++.+.|+.=|-++-- .........+.+...++.+.+- +..+.+++.-..+ .+..+.+.+.| +. +-++--
T Consensus 109 ~eL~~l~~~gv~Gi~l~~~--~~~~~~~~~~~~~~~~~~a~~~--glpv~iH~~~~~l-~~~~~~l~~~p-~~-~Vi~H~ 181 (294)
T 4i6k_A 109 NELVNLKAQGIVGVRLNLF--GLNLPALNTPDWQKFLRNVESL--NWQVELHAPPKYL-VQLLPQLNEYS-FD-VVIDHF 181 (294)
T ss_dssp HHHHHHHTTTEEEEEEECT--TSCCCCSSSHHHHHHHHHHHHT--TCEEEEECCHHHH-HHHHHHHTTSS-SC-EEESGG
T ss_pred HHHHHHHHCCCcEEEeccC--CCCCCCcccHHHHHHHHHHHHc--CCEEEEeeCcchH-HHHHHHHHHCC-CC-EEEECC
Confidence 5677788889888887631 1100111235666677666542 4567777653334 45666777788 75 444433
Q ss_pred cCCC--------ChhhHhhhCCCCCEEEEEE---eeCCCCCCCCHHHHHHHHHHHhhhcCCCcEEEeCCCCCccc
Q 003819 270 RGTK--------TLDLIKTEFPLGKYLFAGV---VDGRNIWANDLASSLTTLQDLAGTVGKDKVVVSTSCSLLHT 333 (793)
Q Consensus 270 ~~~~--------~l~~l~~~~p~~k~l~lGv---Vdgrn~w~ed~~~i~~~i~~~~~~v~~e~l~vspsCgL~hv 333 (793)
.++. .++.+.. +.+...+.+++ +.-.+ +..........++++.+.+|++||...|+|+....
T Consensus 182 g~p~~~~g~~~~~~~~~~~-l~~~~nv~~k~Sg~~~~~~-~~~~~~~~~~~l~~~~~~~g~dRll~gSD~P~~~~ 254 (294)
T 4i6k_A 182 GRVDPVKGIEDPDYQKFLS-LLNVKQHWIKVSGFYRLGA-TPSNINIAQQAYNIFKEKGFLHKLIWGSDWPHTQH 254 (294)
T ss_dssp GCCCTTTCTTCHHHHHHHH-HCCTTTEEEECCCGGGSSS-TTHHHHHHHHHHHHHHHHTCGGGEECCCCBTCTTC
T ss_pred CCCCCCCCCCCHHHHHHHH-HHhCCCEEEEecccccccc-cCCCchhhHHHHHHHHHHhCcccEEEeCCCCCCCC
Confidence 3211 1233332 22222355553 21111 11122344567888888899999999999998754
No 98
>3eol_A Isocitrate lyase; seattle structural center for infectious disease, ssgcid; 2.00A {Brucella melitensis} PDB: 3oq8_A 3e5b_A 3p0x_A*
Probab=32.44 E-value=5.4e+02 Score=28.32 Aligned_cols=94 Identities=17% Similarity=0.146 Sum_probs=55.9
Q ss_pred chhHHHH---HHcCCCcEEEEecCCCChhhHHHhhhccc--CCCeEeeeeecCCCCCCC-----CHHHHHHHHHHHHhhc
Q 003819 681 FNDIIHS---IMDMDADVITIENSRSDEKLLSVFREGVK--YRAGIGPGVYDIHSPRIP-----STEEIADRINKMLAVL 750 (793)
Q Consensus 681 ~~~i~~~---l~~l~~D~isiE~~r~~~~~L~~~~~~~~--~~~~i~~GVvD~~s~~ve-----s~eev~~~i~~al~~i 750 (793)
+++.+.. ..+ ++|.|.+|....+.+.++.|.+... .|..+..+. .+|... +.+++...+.+..+ +
T Consensus 265 ld~AI~Ra~AY~~-GAD~If~e~~~~~~eei~~f~~~v~~~~P~~~L~~~---~sPsfnw~~~~~~~~~~~f~~eLa~-l 339 (433)
T 3eol_A 265 IEPCIARAIAYAP-YCDLIWMETSKPDLAQARRFAEAVHKAHPGKLLAYN---CSPSFNWKKNLDDATIAKFQRELGA-M 339 (433)
T ss_dssp HHHHHHHHHHHGG-GCSEEEECCSSCCHHHHHHHHHHHHHHSTTCCEEEE---CCSSSCHHHHSCHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHh-cCCEEEEeCCCCCHHHHHHHHHHhcccCCCcccccC---CCCCCcccccCChhHHhHHHHHHHH-c
Confidence 4555443 346 9999999987656666666654222 344333322 233333 67777666666654 5
Q ss_pred CCCcEEEcCCCCCCCCChhHHHHHHHHHHHHHHHHHHH
Q 003819 751 ESNILWVNPDCGLKTRKYSEVKPALSNMVAAAKLLRTQ 788 (793)
Q Consensus 751 ~~~~l~vsPdCGL~t~~~~~~~~kL~~mv~aa~~~r~~ 788 (793)
|...+.+ +..-.......|.++++.++++
T Consensus 340 Gv~~v~~---------~~a~~raa~~A~~~~a~~i~~~ 368 (433)
T 3eol_A 340 GYKFQFI---------TLAGFHQLNYGMFELARGYKDR 368 (433)
T ss_dssp TEEEEEE---------TTHHHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEe---------CcHHHHHHHHHHHHHHHHHHHc
Confidence 7666655 2333467777777877777664
No 99
>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A*
Probab=32.07 E-value=2.1e+02 Score=28.56 Aligned_cols=138 Identities=12% Similarity=0.073 Sum_probs=69.1
Q ss_pred HHHHHHHHHCCCCEEEeec------cccccCCChHHHHHHHHHHHHHHhccCCCcEEEEeccCCCchhhHHHHhcCCCcc
Q 003819 189 KEVVAELKAAGATWIQFDE------PTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVT 262 (793)
Q Consensus 189 ~~~l~~L~~aG~~~VQiDE------P~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~lp~Vd 262 (793)
.++++.+ ++|++|+++|- |.+... ...++.+++ ..+ . ...+++-++ +. +..++.+.+.. +|
T Consensus 16 ~~~i~~~-~~gad~lHvDvmDG~fvpn~t~G--~~~v~~lr~----~~~-~-~~dvhLmv~--dp-~~~i~~~~~aG-Ad 82 (231)
T 3ctl_A 16 KEQIEFI-DSHADYFHIDIMDGHFVPNLTLS--PFFVSQVKK----LAT-K-PLDCHLMVT--RP-QDYIAQLARAG-AD 82 (231)
T ss_dssp HHHHHHH-HTTCSCEEEEEECSSSSSCCCBC--HHHHHHHHT----TCC-S-CEEEEEESS--CG-GGTHHHHHHHT-CS
T ss_pred HHHHHHH-HcCCCEEEEEEEeCccCccchhc--HHHHHHHHh----ccC-C-cEEEEEEec--CH-HHHHHHHHHcC-CC
Confidence 4577778 89999999994 444332 122233222 111 1 123333333 33 44567888888 89
Q ss_pred EEEEEecc-CCCChhhHhhhC-CCCCEEEEEEeeCCCCCCCCHHHHHHHHHHHhhhcCCCcEE-EeCCCCCccccccccc
Q 003819 263 GFGFDLIR-GTKTLDLIKTEF-PLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVV-VSTSCSLLHTAVDLEN 339 (793)
Q Consensus 263 ~l~lD~~~-~~~~l~~l~~~~-p~~k~l~lGvVdgrn~w~ed~~~i~~~i~~~~~~v~~e~l~-vspsCgL~hvP~~~~~ 339 (793)
++.+=+.. .. .+..+.+.. ..++.+++-+ +..++ .+ +++.....+ |.|. .+-+.||.--.+
T Consensus 83 ~itvh~Ea~~~-~~~~~i~~i~~~G~k~gv~l-np~tp----~~----~~~~~l~~~--D~VlvmsV~pGfggQ~f---- 146 (231)
T 3ctl_A 83 FITLHPETING-QAFRLIDEIRRHDMKVGLIL-NPETP----VE----AMKYYIHKA--DKITVMTVDPGFAGQPF---- 146 (231)
T ss_dssp EEEECGGGCTT-THHHHHHHHHHTTCEEEEEE-CTTCC----GG----GGTTTGGGC--SEEEEESSCTTCSSCCC----
T ss_pred EEEECcccCCc-cHHHHHHHHHHcCCeEEEEE-ECCCc----HH----HHHHHHhcC--CEEEEeeeccCcCCccc----
Confidence 88665544 32 333332211 1355555544 33222 22 233333333 5554 244445543221
Q ss_pred ccCCcHHHHhHHHHHHHHHHHHHHHHH
Q 003819 340 ETKLDQEIKSWLAFAAQKVVEVNALAK 366 (793)
Q Consensus 340 E~~l~~~~~~~lafA~qKl~El~~l~~ 366 (793)
.+ ...+|+++++.+..
T Consensus 147 ----~~-------~~l~kI~~lr~~~~ 162 (231)
T 3ctl_A 147 ----IP-------EMLDKLAELKAWRE 162 (231)
T ss_dssp ----CT-------THHHHHHHHHHHHH
T ss_pred ----cH-------HHHHHHHHHHHHHh
Confidence 11 37789999888864
No 100
>3gka_A N-ethylmaleimide reductase; decode biostructures, ssgcid, niaid, targetdb bupsa00093A, structural genomics; HET: FMN; 2.30A {Burkholderia pseudomallei} SCOP: c.1.4.0
Probab=30.83 E-value=5e+02 Score=27.67 Aligned_cols=101 Identities=13% Similarity=0.142 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHHcCCcEEEEcCcc-------cccCCCCCc----ccH---HHHHHHHHHHHHHHhcCCCCCCeEEE
Q 003819 609 YQIALAIKDEVEDLEKAGITVIQIDEAA-------LREGLPLRK----SEQ---DFYLKWAVHSFRITNCGVQDTTQVHT 674 (793)
Q Consensus 609 ~~lA~al~~ev~~L~~aGv~~IQIDEPa-------l~~~l~l~~----~~~---~~~l~~av~a~~~~~~~v~~~~~I~l 674 (793)
.++...+.+-.+...++|.+.|+|.--- |......+. .+. ..++-..+++.+.++. ++ .|.+
T Consensus 157 ~~ii~~f~~AA~~A~~aGfDgVEih~a~GYLl~QFLsp~~N~RtD~yGGslenR~rf~~evv~aVr~~vg---~~-~v~v 232 (361)
T 3gka_A 157 PGVVAAFRRGAENARAAGFDGVEVHGANGYLLDQFLQDSANRRTDAYGGSIENRARLLLEVVDAAIDVWS---AA-RVGV 232 (361)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEEEECCTTSHHHHHHSTTTCCCCSTTSSSHHHHSHHHHHHHHHHHHHHC---GG-GEEE
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEECCcCccHHHhccCcccccccCCCCCChhhcHHHHHHHHHHHHHHcC---CC-eEEE
Confidence 4555666666677788999999999642 111111111 112 2334445566665542 22 3444
Q ss_pred EeCCC---------C----chhHHHHHHcCCCcEEEEecCCCChhhHHHhhh
Q 003819 675 HMCYS---------N----FNDIIHSIMDMDADVITIENSRSDEKLLSVFRE 713 (793)
Q Consensus 675 H~C~g---------~----~~~i~~~l~~l~~D~isiE~~r~~~~~L~~~~~ 713 (793)
-+.-. + +..+.+.+.+.++|.|++-....+.+..+.+++
T Consensus 233 Rls~~~~~~g~~~~~~~~~~~~la~~l~~~Gvd~i~v~~~~~~~~~~~~ik~ 284 (361)
T 3gka_A 233 HLAPRGDAHTMGDSDPAATFGHVARELGRRRIAFLFARESFGGDAIGQQLKA 284 (361)
T ss_dssp EECTTCCSSSCCCSCHHHHHHHHHHHHHHTTCSEEEEECCCSTTCCHHHHHH
T ss_pred ecccccccCCCCCCCcHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHH
Confidence 44321 1 234667788899999998643222234455554
No 101
>3kru_A NADH:flavin oxidoreductase/NADH oxidase; homotetramer, dimer of dimers, TIM barrel, thermophilic, OLD enzyme; HET: FMN; 1.60A {Thermoanaerobacter pseudethanolicus AT} SCOP: c.1.4.0 PDB: 3krz_A*
Probab=30.81 E-value=2.8e+02 Score=29.44 Aligned_cols=91 Identities=15% Similarity=0.190 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHHHcCCcEEEEcCc-------ccccCCCCC----cccHHHHHHHHHHHHHHHhcCCCCCCeEEEEe
Q 003819 608 CYQIALAIKDEVEDLEKAGITVIQIDEA-------ALREGLPLR----KSEQDFYLKWAVHSFRITNCGVQDTTQVHTHM 676 (793)
Q Consensus 608 ~~~lA~al~~ev~~L~~aGv~~IQIDEP-------al~~~l~l~----~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~ 676 (793)
..++...+.+-.+.+.++|++.|+|.-- .+......+ ..+...-.+++.+.++.+-+.++++..|.+=+
T Consensus 138 I~~ii~~f~~AA~~a~~aGfDgVEih~ahGYLl~qFlsp~~N~R~D~yGGslenR~rf~~eiv~aVr~avg~d~pv~vRl 217 (343)
T 3kru_A 138 IKSIVKAFGEAAKRANLAGYDVVEIHAAHGYLIHEFLSPLSNKRKDEYGNSIENRARFLIEVIDEVRKNWPENKPIFVRV 217 (343)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHTSCTTSCEEEEE
T ss_pred HHHHHHHHHHHHhhccccCCceEEEecccchhHHHhhcccccccchhhccchHhHHHHHHHHHHHHHhcCCccCCeEEEe
Confidence 3456666777777788899999999932 111111011 11233334455555555555565444455544
Q ss_pred CCCC----------chhHHHHHHcCCCcEEEEe
Q 003819 677 CYSN----------FNDIIHSIMDMDADVITIE 699 (793)
Q Consensus 677 C~g~----------~~~i~~~l~~l~~D~isiE 699 (793)
.-.+ +..+...|.+. +|.|++-
T Consensus 218 s~~~~~~~g~~~~~~~~~a~~l~~~-vd~i~vs 249 (343)
T 3kru_A 218 SADDYMEGGINIDMMVEYINMIKDK-VDLIDVS 249 (343)
T ss_dssp ECCCSSTTSCCHHHHHHHHHHHTTT-CSEEEEE
T ss_pred echhhhccCccHHHHHHHHHHhhcc-ccEEecc
Confidence 4222 23567777788 9999984
No 102
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}
Probab=30.34 E-value=1.2e+02 Score=31.82 Aligned_cols=62 Identities=11% Similarity=0.114 Sum_probs=40.2
Q ss_pred HHHHHHHHCCCCEEEeeccccccCCChHHHHHHHHHHHHHHhccCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEE
Q 003819 190 EVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFD 267 (793)
Q Consensus 190 ~~l~~L~~aG~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~lp~Vd~l~lD 267 (793)
+++++..++|+++||+|-.. . +.++++.+.+.. ++++..+ |++..+++..+.+.. ||.|.+=
T Consensus 209 ~ea~eAl~aGaD~I~LDn~~------~---~~l~~av~~~~~---~v~ieaS---GGIt~~~i~~~a~tG-VD~IsvG 270 (287)
T 3tqv_A 209 DELNQAIAAKADIVMLDNFS------G---EDIDIAVSIARG---KVALEVS---GNIDRNSIVAIAKTG-VDFISVG 270 (287)
T ss_dssp HHHHHHHHTTCSEEEEESCC------H---HHHHHHHHHHTT---TCEEEEE---SSCCTTTHHHHHTTT-CSEEECS
T ss_pred HHHHHHHHcCCCEEEEcCCC------H---HHHHHHHHhhcC---CceEEEE---CCCCHHHHHHHHHcC-CCEEEEC
Confidence 34555567899999999632 2 334444444432 3455444 666456788999998 9998863
No 103
>1lt8_A Betaine-homocysteine methyltransferase; homocysteine metabolism, homocysteinemia, zinc, thiol alkyl transfer; HET: CBH CIT; 2.05A {Homo sapiens} SCOP: c.1.26.1 PDB: 1lt7_A* 1umy_A
Probab=29.36 E-value=1.5e+02 Score=32.48 Aligned_cols=54 Identities=6% Similarity=-0.020 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHCCCCEEEeeccccccCCChHHHHHHHHHHHHHHhccCCCcEEEEecc
Q 003819 181 IDKIIPVYKEVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYF 244 (793)
Q Consensus 181 l~~L~~~Y~~~l~~L~~aG~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyf 244 (793)
.+++...|++.++.|.+.||+.|-+. .+ .+-.+..++.++.+. . .+.++++..|
T Consensus 134 ~eel~~~~~eqi~~L~~~GvDlll~E-Ti----~~~~Eakaa~~a~~~----~-~lPv~iS~T~ 187 (406)
T 1lt8_A 134 ETEVKKVFLQQLEVFMKKNVDFLIAE-YF----EHVEEAVWAVETLIA----S-GKPVAATMAI 187 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSEEEEC-CC----SCHHHHHHHHHHHGG----G-TSCEEEEECC
T ss_pred HHHHHHHHHHHHHHHhhCCCCEEEEc-cc----CCHHHHHHHHHHHHH----h-CCcEEEEEEE
Confidence 37899999999999999999998665 11 122344444333322 1 3567777666
No 104
>3lg3_A Isocitrate lyase; conserved, CD, proteomics evidence (cytopl periplasmic), drug target functions; 1.40A {Yersinia pestis} SCOP: c.1.12.7 PDB: 1igw_A
Probab=29.20 E-value=6.1e+02 Score=27.92 Aligned_cols=93 Identities=19% Similarity=0.233 Sum_probs=54.2
Q ss_pred chhHHHH---HHcCCCcEEEEecCCCChhhHHHhhhccc--CCCeEeeeeecCCCCCCC-----CHHHHHHHHHHHHhhc
Q 003819 681 FNDIIHS---IMDMDADVITIENSRSDEKLLSVFREGVK--YRAGIGPGVYDIHSPRIP-----STEEIADRINKMLAVL 750 (793)
Q Consensus 681 ~~~i~~~---l~~l~~D~isiE~~r~~~~~L~~~~~~~~--~~~~i~~GVvD~~s~~ve-----s~eev~~~i~~al~~i 750 (793)
+++.+.. ..+ ++|.|.+|....+.+.++.|.+... .|..+..+. .+|... +.++++.-..+..+ +
T Consensus 270 ld~AI~Ra~AY~~-GAD~if~E~~~~~~~ei~~f~~~v~~~~P~~~La~~---~sPsfnw~~~~~d~~~~~f~~eLa~-l 344 (435)
T 3lg3_A 270 IEQAISRGLAYAP-YADLVWCETSTPDLALAKRFADAVHAQFPGKLLAYN---CSPSFNWKKNLTDQQIASFQDELSA-M 344 (435)
T ss_dssp HHHHHHHHHHHGG-GCSEEEECCSSCCHHHHHHHHHHHHHHSTTCEEEEE---CCSSSCHHHHSCHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHHHHc-cCCEEEecCCCCCHHHHHHHHHHhccccCCeEEEeC---CCCCccccccCCHHHHHHHHHHHHH-c
Confidence 4554443 346 9999999987656666666654222 454444433 223222 66777776777655 5
Q ss_pred CCCcEEEcCCCCCCCCChhHHHHHHHHHHHHHHHHHH
Q 003819 751 ESNILWVNPDCGLKTRKYSEVKPALSNMVAAAKLLRT 787 (793)
Q Consensus 751 ~~~~l~vsPdCGL~t~~~~~~~~kL~~mv~aa~~~r~ 787 (793)
|...+.+ |.-+ .......|.+.++.+++
T Consensus 345 G~~~v~~-~la~--------~raa~~a~~~~a~~~~~ 372 (435)
T 3lg3_A 345 GYKYQFI-TLAG--------IHSMWFNMFDLAHAYAQ 372 (435)
T ss_dssp TEEEEEE-TTHH--------HHHHHHHHHHHHHHHHH
T ss_pred CCcEEEe-CcHH--------HHHHHHHHHHHHHHHHh
Confidence 6554444 2222 35666777777777766
No 105
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}
Probab=28.89 E-value=1.4e+02 Score=31.38 Aligned_cols=63 Identities=11% Similarity=0.038 Sum_probs=40.8
Q ss_pred HHHHHHHHCCCCEEEeeccccccCCChHHHHHHHHHHHHHHhccCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEEe
Q 003819 190 EVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDL 268 (793)
Q Consensus 190 ~~l~~L~~aG~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~lp~Vd~l~lD~ 268 (793)
+++++..++|++.||+|-. +. +.++++...+.. ++.+-.+ |++..+++..+.+.. ||.|.+=.
T Consensus 218 ~e~~eAl~aGaDiImLDn~------s~---~~l~~av~~~~~---~v~leaS---GGIt~~~i~~~A~tG-VD~IsvGa 280 (300)
T 3l0g_A 218 SQVEESLSNNVDMILLDNM------SI---SEIKKAVDIVNG---KSVLEVS---GCVNIRNVRNIALTG-VDYISIGC 280 (300)
T ss_dssp HHHHHHHHTTCSEEEEESC------CH---HHHHHHHHHHTT---SSEEEEE---SSCCTTTHHHHHTTT-CSEEECGG
T ss_pred HHHHHHHHcCCCEEEECCC------CH---HHHHHHHHhhcC---ceEEEEE---CCCCHHHHHHHHHcC-CCEEEeCc
Confidence 3445556789999999953 32 334444444432 3444444 666456788999999 99988754
No 106
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}
Probab=27.99 E-value=51 Score=34.71 Aligned_cols=63 Identities=17% Similarity=0.132 Sum_probs=39.4
Q ss_pred HHHHHHHHcCCcEEEEcCcccccCCCCCcccHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCchhHHHHHHcCCCcEE
Q 003819 617 DEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDADVI 696 (793)
Q Consensus 617 ~ev~~L~~aGv~~IQIDEPal~~~l~l~~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~C~g~~~~i~~~l~~l~~D~i 696 (793)
+|+.+..++|+++|++|.+.. +-+..++...+ +. +.+=...|--.+.+..+.+.++|.|
T Consensus 218 ~e~~eAl~aGaDiImLDn~s~------------~~l~~av~~~~-------~~--v~leaSGGIt~~~i~~~A~tGVD~I 276 (300)
T 3l0g_A 218 SQVEESLSNNVDMILLDNMSI------------SEIKKAVDIVN-------GK--SVLEVSGCVNIRNVRNIALTGVDYI 276 (300)
T ss_dssp HHHHHHHHTTCSEEEEESCCH------------HHHHHHHHHHT-------TS--SEEEEESSCCTTTHHHHHTTTCSEE
T ss_pred HHHHHHHHcCCCEEEECCCCH------------HHHHHHHHhhc-------Cc--eEEEEECCCCHHHHHHHHHcCCCEE
Confidence 566667778999999998543 12333343332 12 2333342323456788999999999
Q ss_pred EEec
Q 003819 697 TIEN 700 (793)
Q Consensus 697 siE~ 700 (793)
|+=.
T Consensus 277 svGa 280 (300)
T 3l0g_A 277 SIGC 280 (300)
T ss_dssp ECGG
T ss_pred EeCc
Confidence 9863
No 107
>1hjs_A Beta-1,4-galactanase; 4-galactanases, family 53 glycoside hydrolase, thermostability, PH optimum, CLAN GH-A, thermophIle, alkalophIle; HET: NAG EPE; 1.87A {Thielavia heterothallica} SCOP: c.1.8.3 PDB: 1hju_A* 1hjq_A*
Probab=27.98 E-value=5.4e+02 Score=26.89 Aligned_cols=155 Identities=12% Similarity=0.118 Sum_probs=89.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHcC--CcEEEEc-CcccccCCCCC-cccHHH---HHHHHHHHHHHHhcCCCCCCeEEEE
Q 003819 603 PRFETCYQIALAIKDEVEDLEKAG--ITVIQID-EAALREGLPLR-KSEQDF---YLKWAVHSFRITNCGVQDTTQVHTH 675 (793)
Q Consensus 603 ~~~e~~~~lA~al~~ev~~L~~aG--v~~IQID-EPal~~~l~l~-~~~~~~---~l~~av~a~~~~~~~v~~~~~I~lH 675 (793)
+..++..++....++-++.|.+.| +.+|||= |+......|.- ..+++. ++..++.+.|.+.. .+.++|.+|
T Consensus 101 ~~~~~~~~~~~yt~~vl~~l~~~g~~~~~v~vGNEi~~g~~w~~g~~~~~~~~~~l~~~~~~avR~~~~--~p~~~v~ih 178 (332)
T 1hjs_A 101 DIDNLSWKLYNYTLDAANKLQNAGIQPTIVSIGNEIRAGLLWPTGRTENWANIARLLHSAAWGIKDSSL--SPKPKIMIH 178 (332)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHTTCCCSEEEESSSGGGEETBTTEETTCHHHHHHHHHHHHHHHHTSCC--SSCCEEEEE
T ss_pred chHHHHHHHHHHHHHHHHHHHHcCCCCCEEEEeecccccccCcCCCccCHHHHHHHHHHHHHHHHHhcc--CCCCeEEEE
Confidence 446677777777777778888877 4667764 55442222211 113333 34444444443321 145789999
Q ss_pred eCCCC----chhHHHHHHc---C---CCcEEEEecCCCChhhHHHhhhcccCCCeEeeeeecCCCCCCCCHHHHHHHHHH
Q 003819 676 MCYSN----FNDIIHSIMD---M---DADVITIENSRSDEKLLSVFREGVKYRAGIGPGVYDIHSPRIPSTEEIADRINK 745 (793)
Q Consensus 676 ~C~g~----~~~i~~~l~~---l---~~D~isiE~~r~~~~~L~~~~~~~~~~~~i~~GVvD~~s~~ves~eev~~~i~~ 745 (793)
.+.|. +...++.+.+ . ++|+|++..=.. +.. + .+++.+...++.
T Consensus 179 ~~~~~~~~~~~~~~d~~~~~g~~~~~~~DvIG~syYp~-------w~~----~---------------~~~~~l~~~l~~ 232 (332)
T 1hjs_A 179 LDNGWDWGTQNWWYTNVLKQGTLELSDFDMMGVSFYPF-------YSS----S---------------ATLSALKSSLDN 232 (332)
T ss_dssp ESCTTCHHHHHHHHHHHHTTSSSCGGGCCEEEEECCSS-------SCT----T---------------CCHHHHHHHHHH
T ss_pred eCCccchHHHHHHHHHHHhcCCCCCCCcCEEEEecCcc-------cCC----C---------------CCHHHHHHHHHH
Confidence 99763 2223355543 3 578888873210 100 0 256788888888
Q ss_pred HHhhcCCCcEEEcCCCCCC---------------CCChhHHHHHHHHHHHHHHHH
Q 003819 746 MLAVLESNILWVNPDCGLK---------------TRKYSEVKPALSNMVAAAKLL 785 (793)
Q Consensus 746 al~~i~~~~l~vsPdCGL~---------------t~~~~~~~~kL~~mv~aa~~~ 785 (793)
..+..+..-+++-++|... +++++.+..-|+.+.++++.+
T Consensus 233 ~~~rygKpv~v~EtG~~~~~~~~~~~~~~~~~~~~~s~~~Qa~~l~~~~~~~~~~ 287 (332)
T 1hjs_A 233 MAKTWNKEIAVVETNWPISCPNPRYSFPSDVKNIPFSPEGQTTFITNVANIVSSV 287 (332)
T ss_dssp HHHHHCCEEEEEECCCCSBCSSCSSCCCGGGTTSCSSHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHCCCEEEEEccCccCCCCCcccccccccCCCCCHHHHHHHHHHHHHHHHhc
Confidence 8877776556666777542 245566677787777766544
No 108
>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor}
Probab=27.93 E-value=1.4e+02 Score=31.74 Aligned_cols=61 Identities=16% Similarity=0.130 Sum_probs=40.0
Q ss_pred HHHHHHHCCCCEEEeeccccccCCChHHHHHHHHHHHHHHhccCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEE
Q 003819 191 VVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFD 267 (793)
Q Consensus 191 ~l~~L~~aG~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~lp~Vd~l~lD 267 (793)
++++..++|++.|++|-. + .+.++++-..+.. +++|..+ |++..+++..+.+.+ ||.|.+=
T Consensus 243 ea~eAl~aGaD~I~LDn~------~---~~~l~~av~~l~~---~v~ieaS---GGIt~~~I~~~a~tG-VD~isvG 303 (320)
T 3paj_A 243 ELEEAISAGADIIMLDNF------S---LEMMREAVKINAG---RAALENS---GNITLDNLKECAETG-VDYISVG 303 (320)
T ss_dssp HHHHHHHTTCSEEEEESC------C---HHHHHHHHHHHTT---SSEEEEE---SSCCHHHHHHHHTTT-CSEEECT
T ss_pred HHHHHHHcCCCEEEECCC------C---HHHHHHHHHHhCC---CCeEEEE---CCCCHHHHHHHHHcC-CCEEEEC
Confidence 445556789999999963 2 2334444444432 4566655 666466788889999 9988763
No 109
>3i4e_A Isocitrate lyase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.69A {Burkholderia pseudomallei}
Probab=27.91 E-value=6.5e+02 Score=27.77 Aligned_cols=94 Identities=16% Similarity=0.150 Sum_probs=55.9
Q ss_pred chhHHHHH---HcCCCcEEEEecCCCChhhHHHhhhccc--CCCeEeeeeecCCCCCCC-----CHHHHHHHHHHHHhhc
Q 003819 681 FNDIIHSI---MDMDADVITIENSRSDEKLLSVFREGVK--YRAGIGPGVYDIHSPRIP-----STEEIADRINKMLAVL 750 (793)
Q Consensus 681 ~~~i~~~l---~~l~~D~isiE~~r~~~~~L~~~~~~~~--~~~~i~~GVvD~~s~~ve-----s~eev~~~i~~al~~i 750 (793)
+++.+... .+ ++|.|.+|....+.+.++.|.+... .|..+..+. .+|... +.++++.-+.+..+ +
T Consensus 270 ldeAI~Ra~AY~~-GAD~if~E~~~~~~eei~~f~~~v~~~~P~~~l~~~---~sPsfnw~~~~~~~~~~~f~~eL~~-l 344 (439)
T 3i4e_A 270 LEQAISRGLAYAP-YADLIWCETGKPDLEYAKKFAEAIHKQFPGKLLSYN---CSPSFNWKKNLDDATIAKFQKELGA-M 344 (439)
T ss_dssp HHHHHHHHHHHTT-TCSEEEECCSSCCHHHHHHHHHHHHHHSTTCEEEEE---CCSSSCHHHHSCHHHHHTHHHHHHH-H
T ss_pred HHHHHHHHHHHHh-hCCEEEecCCCCCHHHHHHHHHHhcccCCceEEeeC---CCCCCcCcccCCHHHHHHHHHHHHH-c
Confidence 55555543 45 9999999986556666666654222 454443332 233333 66777666666655 6
Q ss_pred CCCcEEEcCCCCCCCCChhHHHHHHHHHHHHHHHHHHH
Q 003819 751 ESNILWVNPDCGLKTRKYSEVKPALSNMVAAAKLLRTQ 788 (793)
Q Consensus 751 ~~~~l~vsPdCGL~t~~~~~~~~kL~~mv~aa~~~r~~ 788 (793)
|...+.+ +-.-.......|.+.++.++++
T Consensus 345 Gv~~v~~---------~la~~raa~~A~~~~a~~i~~~ 373 (439)
T 3i4e_A 345 GYKFQFI---------TLAGFHALNYSMFNLAHGYART 373 (439)
T ss_dssp TCCEEEE---------TTHHHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEe---------ChHHHHHHHHHHHHHHHHHHHh
Confidence 7666665 2223356777777777777664
No 110
>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A
Probab=27.88 E-value=66 Score=32.59 Aligned_cols=78 Identities=18% Similarity=0.248 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHCCCCEEEeeccccccCCChHH--------------HHHHHHHHHHHHhccCCCcEEEEeccCCCchhhH
Q 003819 187 VYKEVVAELKAAGATWIQFDEPTLVLDLDSHK--------------LQAFSDAYSELQSSLSGLNVLIETYFADVPAETY 252 (793)
Q Consensus 187 ~Y~~~l~~L~~aG~~~VQiDEP~L~~d~~~~~--------------~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~ 252 (793)
...++++.|.++|+++||++-|.--.-.+... .+...+..+.+.+.. +..+++-+|+...-..-+
T Consensus 33 ~~~~~~~~l~~~Gad~ielg~p~~dp~~dg~~i~~a~~~al~~g~~~~~~~~~i~~ir~~~-~~Pv~~m~~~~~~~~~~~ 111 (262)
T 1rd5_A 33 TTAEALRLLDGCGADVIELGVPCSDPYIDGPIIQASVARALASGTTMDAVLEMLREVTPEL-SCPVVLLSYYKPIMFRSL 111 (262)
T ss_dssp HHHHHHHHHHHTTCSSEEEECCCSCCTTSCHHHHHHHHHHHTTTCCHHHHHHHHHHHGGGC-SSCEEEECCSHHHHSCCT
T ss_pred HHHHHHHHHHHcCCCEEEECCCCCCcccCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcC-CCCEEEEecCcHHHHHHH
Confidence 34467788899999999999887411111111 122223334444332 345666566541100012
Q ss_pred HHHhcCCCccEEEE
Q 003819 253 KILTSLKGVTGFGF 266 (793)
Q Consensus 253 ~~l~~lp~Vd~l~l 266 (793)
+.+.+.. +||+++
T Consensus 112 ~~a~~aG-adgv~v 124 (262)
T 1rd5_A 112 AKMKEAG-VHGLIV 124 (262)
T ss_dssp HHHHHTT-CCEEEC
T ss_pred HHHHHcC-CCEEEE
Confidence 3467788 999997
No 111
>2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2
Probab=27.73 E-value=1.4e+02 Score=29.00 Aligned_cols=95 Identities=7% Similarity=0.043 Sum_probs=49.8
Q ss_pred HHHHHHHHHCCCCEEEeec--cccccCCChHHHHHHHHHHHHHHhccCCCcEEEEeccCCCchhhHHHHhcCCCccEEEE
Q 003819 189 KEVVAELKAAGATWIQFDE--PTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGF 266 (793)
Q Consensus 189 ~~~l~~L~~aG~~~VQiDE--P~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~lp~Vd~l~l 266 (793)
.+.++.+.++|++|||+|. -.+....+. -.+.+ +.+.+.. +..+.++.+..+. .+..+.+.++. +|++.+
T Consensus 19 ~~~~~~~~~~G~~~i~~~~~dg~~~~~~~~-g~~~i----~~i~~~~-~~~~~v~l~v~d~-~~~i~~~~~~g-ad~v~v 90 (220)
T 2fli_A 19 ASELARIEETDAEYVHIDIMDGQFVPNISF-GADVV----ASMRKHS-KLVFDCHLMVVDP-ERYVEAFAQAG-ADIMTI 90 (220)
T ss_dssp HHHHHHHHHTTCCEEEEEEEBSSSSSCBCB-CHHHH----HHHHTTC-CSEEEEEEESSSG-GGGHHHHHHHT-CSEEEE
T ss_pred HHHHHHHHHcCCCEEEEEeecCCCCCcccc-CHHHH----HHHHHhC-CCCEEEEEeecCH-HHHHHHHHHcC-CCEEEE
Confidence 3456667789999999995 111111110 01222 2232221 2356666665555 44458888888 999977
Q ss_pred EeccCCCChhhHhhhC-CCCCEEEEEE
Q 003819 267 DLIRGTKTLDLIKTEF-PLGKYLFAGV 292 (793)
Q Consensus 267 D~~~~~~~l~~l~~~~-p~~k~l~lGv 292 (793)
-.... .....+.+.+ ..++.+++.+
T Consensus 91 h~~~~-~~~~~~~~~~~~~g~~i~~~~ 116 (220)
T 2fli_A 91 HTEST-RHIHGALQKIKAAGMKAGVVI 116 (220)
T ss_dssp EGGGC-SCHHHHHHHHHHTTSEEEEEE
T ss_pred ccCcc-ccHHHHHHHHHHcCCcEEEEE
Confidence 65443 2332222211 1245666665
No 112
>1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A*
Probab=27.68 E-value=3.4e+02 Score=28.54 Aligned_cols=85 Identities=13% Similarity=0.171 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHHcCCcEEEEcC-----------ccc--ccCCCCCcccHH---HHHHHHHHHHHHHhcCCCCCCe
Q 003819 608 CYQIALAIKDEVEDLEKAGITVIQIDE-----------AAL--REGLPLRKSEQD---FYLKWAVHSFRITNCGVQDTTQ 671 (793)
Q Consensus 608 ~~~lA~al~~ev~~L~~aGv~~IQIDE-----------Pal--~~~l~l~~~~~~---~~l~~av~a~~~~~~~v~~~~~ 671 (793)
..++...+.+-.+.+.++|++.|+|.- |.. +.+ .-..+.. .+.-..+++.+.++ . ..
T Consensus 139 I~~~i~~~~~aA~~a~~aGfDgVeih~~~gyLl~qFlsp~~n~R~d--~yGGslenr~r~~~eiv~avr~~v-~----~p 211 (338)
T 1z41_A 139 VKETVQEFKQAAARAKEAGFDVIEIHAAHGYLIHEFLSPLSNHRTD--EYGGSPENRYRFLREIIDEVKQVW-D----GP 211 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCS--TTSSSHHHHHHHHHHHHHHHHHHC-C----SC
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEeccccchHHHHccCCCcCCcCc--ccCcchhhhHHHHHHHHHHHHHHc-C----Cc
Confidence 355666777777788899999999985 221 110 0011122 23344555555554 2 33
Q ss_pred EEEEeCCCC----------chhHHHHHHcCCCcEEEEe
Q 003819 672 VHTHMCYSN----------FNDIIHSIMDMDADVITIE 699 (793)
Q Consensus 672 I~lH~C~g~----------~~~i~~~l~~l~~D~isiE 699 (793)
|.+-+.-.+ +..+...+.+.++|.|++-
T Consensus 212 v~vris~~~~~~~g~~~~~~~~~a~~l~~~Gvd~i~v~ 249 (338)
T 1z41_A 212 LFVRVSASDYTDKGLDIADHIGFAKWMKEQGVDLIDCS 249 (338)
T ss_dssp EEEEEECCCCSTTSCCHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEecCcccCCCCCCHHHHHHHHHHHHHcCCCEEEEe
Confidence 555554321 2356777888999999985
No 113
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}
Probab=27.60 E-value=1.5e+02 Score=30.56 Aligned_cols=75 Identities=15% Similarity=0.146 Sum_probs=45.6
Q ss_pred HHHHHHHHHHCCCCEEEeeccccccCCC--hHHHHH--------------HHHHHHHHHhccCCCcEEEEeccCC-----
Q 003819 188 YKEVVAELKAAGATWIQFDEPTLVLDLD--SHKLQA--------------FSDAYSELQSSLSGLNVLIETYFAD----- 246 (793)
Q Consensus 188 Y~~~l~~L~~aG~~~VQiDEP~L~~d~~--~~~~~~--------------~~~~y~~l~~~~~~~~i~l~tyfg~----- 246 (793)
..++++.|.++|+++|.|+=|. .|.- ...++. +-+..+.+.+......+++-+||..
T Consensus 34 ~~~~~~~l~~~GaD~iElgiPf--SDP~aDGp~Iq~a~~~AL~~G~~~~~~~~~v~~ir~~~~~~Pivlm~Y~npv~~~g 111 (267)
T 3vnd_A 34 SLKIIQTLVDNGADALELGFPF--SDPLADGPVIQGANLRSLAAGTTSSDCFDIITKVRAQHPDMPIGLLLYANLVFANG 111 (267)
T ss_dssp HHHHHHHHHHTTCSSEEEECCC--SCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCCEEEEECHHHHHHHC
T ss_pred HHHHHHHHHHcCCCEEEECCCC--CCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEecCcHHHHhh
Confidence 4567788999999999999876 2321 112221 1223333433212356888889753
Q ss_pred CchhhHHHHhcCCCccEEEE
Q 003819 247 VPAETYKILTSLKGVTGFGF 266 (793)
Q Consensus 247 ~~~~~~~~l~~lp~Vd~l~l 266 (793)
+ +.-++.+.+.. |||+-+
T Consensus 112 ~-e~f~~~~~~aG-vdgvii 129 (267)
T 3vnd_A 112 I-DEFYTKAQAAG-VDSVLI 129 (267)
T ss_dssp H-HHHHHHHHHHT-CCEEEE
T ss_pred H-HHHHHHHHHcC-CCEEEe
Confidence 3 44566777888 999655
No 114
>3iix_A Biotin synthetase, putative; adoMet radical, SAM radical, adoMet cleavage, Fe4S4 cluster, HYDE, hydrogenase, maturation, beta barrel; HET: OTY CSO 5AD CPS; 1.25A {Thermotoga maritima} PDB: 3ciw_A* 3iiz_A* 3cix_A*
Probab=27.45 E-value=5.3e+02 Score=26.57 Aligned_cols=129 Identities=18% Similarity=0.145 Sum_probs=71.8
Q ss_pred HHHHHHCCCCEEEe--ec-cccccCCChHHHHHHHHHHHHHHhccCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEEe
Q 003819 192 VAELKAAGATWIQF--DE-PTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDL 268 (793)
Q Consensus 192 l~~L~~aG~~~VQi--DE-P~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~lp~Vd~l~lD~ 268 (793)
++.+.+.|++.|.| .| |.+. .+.+.+.++.+.+. +..+.++ -|.+..+.+..|.+.. ++.+.+.+
T Consensus 93 i~~~~~~g~~~i~~~gGe~p~~~-------~~~~~~li~~i~~~--~~~i~~s--~g~l~~e~l~~L~~ag-~~~v~i~l 160 (348)
T 3iix_A 93 ARLAVQFGAKTIVLQSGEDPYXM-------PDVISDIVKEIKKM--GVAVTLS--LGEWPREYYEKWKEAG-ADRYLLRH 160 (348)
T ss_dssp HHHHHHTTCSEEEEEESCCGGGT-------THHHHHHHHHHHTT--SCEEEEE--CCCCCHHHHHHHHHHT-CCEEECCC
T ss_pred HHHHHHCCCCEEEEEeCCCCCcc-------HHHHHHHHHHHHhc--CceEEEe--cCCCCHHHHHHHHHhC-CCEEeeee
Confidence 34456679886544 44 4432 23455555555442 2344433 2434367788888888 88888776
Q ss_pred ccC----------CCChhhHhhh---C-CCCCEEEEEEeeCCCCCCCCHHHHHHHHHHHhhhcCCCcEEEeCCCCCcccc
Q 003819 269 IRG----------TKTLDLIKTE---F-PLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVSTSCSLLHTA 334 (793)
Q Consensus 269 ~~~----------~~~l~~l~~~---~-p~~k~l~lGvVdgrn~w~ed~~~i~~~i~~~~~~v~~e~l~vspsCgL~hvP 334 (793)
... ..+++.+.+. + ..+-.+..|++-|... ++.+++.+.++.+.+ ++.+.+.++|=.+.-.+|
T Consensus 161 et~~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~G~p~--et~e~~~~~~~~l~~-l~~~~i~i~~~~p~~gt~ 237 (348)
T 3iix_A 161 ETANPVLHRKLRPDTSFENRLNCLLTLKELGYETGAGSMVGLPG--QTIDDLVDDLLFLKE-HDFDMVGIGPFIPHPDTP 237 (348)
T ss_dssp BCSCHHHHHHHSTTSCHHHHHHHHHHHHHTTCEEEECBEESCTT--CCHHHHHHHHHHHHH-HTCSEECCEECCCCTTST
T ss_pred eeCCHHHHHHhCCCcCHHHHHHHHHHHHHhCCeeccceEEeCCC--CCHHHHHHHHHHHHh-cCCCEEeeeeeecCCCCC
Confidence 532 1233333221 1 1245688899888732 566666666666544 455667766654444444
Q ss_pred c
Q 003819 335 V 335 (793)
Q Consensus 335 ~ 335 (793)
.
T Consensus 238 l 238 (348)
T 3iix_A 238 L 238 (348)
T ss_dssp T
T ss_pred c
Confidence 3
No 115
>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*
Probab=27.35 E-value=1.3e+02 Score=31.31 Aligned_cols=64 Identities=11% Similarity=0.035 Sum_probs=40.0
Q ss_pred HHHHHHHCCCCEEEeeccccccCCChHHHHHHHHHHHHHHhccCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEE
Q 003819 191 VVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFD 267 (793)
Q Consensus 191 ~l~~L~~aG~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~lp~Vd~l~lD 267 (793)
++++..++|+++|++|-. +.++.. ++-+.+....+++++.++ |++..++++.+.+.+ ||+|.+=
T Consensus 206 ea~eal~aGaD~I~LDn~------~~~~~~---~~v~~l~~~~~~v~ieaS---GGIt~~~i~~~a~tG-VD~isvG 269 (284)
T 1qpo_A 206 QLDAVLPEKPELILLDNF------AVWQTQ---TAVQRRDSRAPTVMLESS---GGLSLQTAATYAETG-VDYLAVG 269 (284)
T ss_dssp HHHHHGGGCCSEEEEETC------CHHHHH---HHHHHHHHHCTTCEEEEE---SSCCTTTHHHHHHTT-CSEEECG
T ss_pred HHHHHHHcCCCEEEECCC------CHHHHH---HHHHHhhccCCCeEEEEE---CCCCHHHHHHHHhcC-CCEEEEC
Confidence 556666789999999962 333333 333333321123555555 655456788999999 9998843
No 116
>1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1
Probab=27.17 E-value=2e+02 Score=28.60 Aligned_cols=84 Identities=15% Similarity=0.244 Sum_probs=47.8
Q ss_pred HHHHHHHcCCcEEEEcCcccccCCCCCcccHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCchhHHHHHHcCCCcEEE
Q 003819 618 EVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDADVIT 697 (793)
Q Consensus 618 ev~~L~~aGv~~IQIDEPal~~~l~l~~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~C~g~~~~i~~~l~~l~~D~is 697 (793)
-++.+.+.|+++||+.+-. .+. .+.++...+..+ +..+...+.. .++-++...+.++|.+.
T Consensus 34 ~~~al~~gGv~~iel~~k~---------~~~-------~~~i~~l~~~~~-~l~vgaGtvl--~~d~~~~A~~aGAd~v~ 94 (224)
T 1vhc_A 34 LADTLAKNGLSVAEITFRS---------EAA-------ADAIRLLRANRP-DFLIAAGTVL--TAEQVVLAKSSGADFVV 94 (224)
T ss_dssp HHHHHHHTTCCEEEEETTS---------TTH-------HHHHHHHHHHCT-TCEEEEESCC--SHHHHHHHHHHTCSEEE
T ss_pred HHHHHHHcCCCEEEEeccC---------chH-------HHHHHHHHHhCc-CcEEeeCcEe--eHHHHHHHHHCCCCEEE
Confidence 4566788999999998521 111 123333333343 3345444443 24677888899999996
Q ss_pred EecCCCChhhHHHhhhcccCCCeEeeee
Q 003819 698 IENSRSDEKLLSVFREGVKYRAGIGPGV 725 (793)
Q Consensus 698 iE~~r~~~~~L~~~~~~~~~~~~i~~GV 725 (793)
.-. .+.+.++.-++ ++..+.+|+
T Consensus 95 ~p~--~d~~v~~~ar~---~g~~~i~Gv 117 (224)
T 1vhc_A 95 TPG--LNPKIVKLCQD---LNFPITPGV 117 (224)
T ss_dssp CSS--CCHHHHHHHHH---TTCCEECEE
T ss_pred ECC--CCHHHHHHHHH---hCCCEEecc
Confidence 542 24444454443 344556673
No 117
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Probab=26.89 E-value=2.6e+02 Score=27.64 Aligned_cols=68 Identities=10% Similarity=0.091 Sum_probs=42.4
Q ss_pred HHHHHcCCcEEEEcCcccccCCCCCcccHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCchhHHHHHHcCCCcEEEEe
Q 003819 620 EDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDADVITIE 699 (793)
Q Consensus 620 ~~L~~aGv~~IQIDEPal~~~l~l~~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~C~g~~~~i~~~l~~l~~D~isiE 699 (793)
+.++++|++.|++.++..... .. ....+.++.+.+..+ ..+.+|-...+.++ ++.+.+.++|.+.+-
T Consensus 37 ~~~~~~Gad~i~v~d~~~~~~------~~----~~~~~~i~~i~~~~~--ipvi~~ggI~~~~~-~~~~~~~Gad~V~lg 103 (253)
T 1thf_D 37 KFYSEIGIDELVFLDITASVE------KR----KTMLELVEKVAEQID--IPFTVGGGIHDFET-ASELILRGADKVSIN 103 (253)
T ss_dssp HHHHHTTCCEEEEEESSCSSS------HH----HHHHHHHHHHHTTCC--SCEEEESSCCSHHH-HHHHHHTTCSEEEES
T ss_pred HHHHHcCCCEEEEECCchhhc------CC----cccHHHHHHHHHhCC--CCEEEeCCCCCHHH-HHHHHHcCCCEEEEC
Confidence 567889999999998643210 11 122334444444432 45788866655555 666778899999986
Q ss_pred c
Q 003819 700 N 700 (793)
Q Consensus 700 ~ 700 (793)
.
T Consensus 104 ~ 104 (253)
T 1thf_D 104 T 104 (253)
T ss_dssp H
T ss_pred h
Confidence 3
No 118
>2i5g_A Amidohydrolase; NYSGXRC, NYSGXRC-9311A, PSI2, structural genomics, protein structure initiative; 2.60A {Pseudomonas aeruginosa}
Probab=26.88 E-value=4.6e+02 Score=27.55 Aligned_cols=133 Identities=12% Similarity=0.159 Sum_probs=73.3
Q ss_pred HHHHHHHcCCcEEEEc---CcccccCCCCCcccHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCchhHHHHHHcCCCc
Q 003819 618 EVEDLEKAGITVIQID---EAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDAD 694 (793)
Q Consensus 618 ev~~L~~aGv~~IQID---EPal~~~l~l~~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~C~g~~~~i~~~l~~l~~D 694 (793)
.++.+.+.|++++|+- .-.+..+..........+-..+++..|+. ++--+ ..|++. ...++.+.-...-
T Consensus 104 ~l~~~y~lGvR~~~Lt~n~~N~~~~g~~~~~~GLT~~G~~vV~emnrl--GmivD---lSH~s~---~~~~dvl~~s~~P 175 (325)
T 2i5g_A 104 YVEVFKQLGVGIVQMCYNTQNLVGTGCYERDGGLSGFGREIVAEMNRV--GIMCD---LSHVGS---KTSEEVILESKKP 175 (325)
T ss_dssp HHHHHHHTTEEEEESCCSSBCSSCBBTTSCCCCCCHHHHHHHHHHHHH--TCEEE---CTTBCH---HHHHHHHHHCSSC
T ss_pred HHHHHHHcCCeEEEeeccCCCCCCCCCCCCCCCCCHHHHHHHHHHHHc--CcEEE---cCcCCH---HHHHHHHHHhCCC
Confidence 4566778899999984 11122211001112334555666666654 21000 123332 2233333322222
Q ss_pred -EEEEec-------CCC-ChhhHHHhhhcccCCCeEeeeeecCCC--CCCCCHHHHHHHHHHHHhhcCCCcEEEcCCC
Q 003819 695 -VITIEN-------SRS-DEKLLSVFREGVKYRAGIGPGVYDIHS--PRIPSTEEIADRINKMLAVLESNILWVNPDC 761 (793)
Q Consensus 695 -~isiE~-------~r~-~~~~L~~~~~~~~~~~~i~~GVvD~~s--~~ves~eev~~~i~~al~~i~~~~l~vsPdC 761 (793)
++|-=. .|+ ..+.++.+.+ .+..||+-.++..- ..-.+++.+++-|..+.+.+|.+++.+.+|.
T Consensus 176 vi~SHsn~~al~~h~RNl~De~irala~---~GGvigv~~~~~fl~~~~~~t~~~~~~hi~~i~~~~G~dhVgiGsDf 250 (325)
T 2i5g_A 176 VCYSHCLPSGLKEHPRNKSDEELKFIAD---HGGFVGVTMFAPFLKKGIDSTIDDYAEAIEYVMNIVGEDAIGIGTDF 250 (325)
T ss_dssp CEEEEECBTTTCCCTTSBCHHHHHHHHH---TTCEEEECCCGGGSSSGGGCBHHHHHHHHHHHHHHHCTTSEEECCCB
T ss_pred EEEeCCCccccCCCCCCCCHHHHHHHHH---cCCeEEEeecchhcCCCCCCCHHHHHHHHHHHHHhcCCceEEECCcC
Confidence 222221 232 3456777776 34556665555432 2345899999999999999999999999997
No 119
>1o4u_A Type II quinolic acid phosphoribosyltransferase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1
Probab=25.98 E-value=1.2e+02 Score=31.55 Aligned_cols=65 Identities=14% Similarity=0.154 Sum_probs=38.3
Q ss_pred HHHHHHHCCCCEEEeeccccccCCChHHHHHHHHHHHHHHhccCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEEe
Q 003819 191 VVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDL 268 (793)
Q Consensus 191 ~l~~L~~aG~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~lp~Vd~l~lD~ 268 (793)
++++..++|+++|++|- .+.+++. ++-+.+....+++++..+ |++..+++..+.+.. ||+|.+=-
T Consensus 205 ea~eA~~aGaD~I~LDn------~~~e~l~---~av~~l~~~~~~v~ieAS---GGIt~eni~~~a~tG-VD~IsvGs 269 (285)
T 1o4u_A 205 DALRAVEAGADIVMLDN------LSPEEVK---DISRRIKDINPNVIVEVS---GGITEENVSLYDFET-VDVISSSR 269 (285)
T ss_dssp HHHHHHHTTCSEEEEES------CCHHHHH---HHHHHHHHHCTTSEEEEE---ECCCTTTGGGGCCTT-CCEEEEGG
T ss_pred HHHHHHHcCCCEEEECC------CCHHHHH---HHHHHhhccCCCceEEEE---CCCCHHHHHHHHHcC-CCEEEEeH
Confidence 34445668999999996 2333333 333333221123455555 545346677888888 99988543
No 120
>1f6y_A 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; carbon dioxide fixation, cobalamin, methyltatrahydrofolate; 2.20A {Moorella thermoacetica} SCOP: c.1.21.2 PDB: 2e7f_A* 4djd_A* 4dje_A* 4djf_A* 2ogy_A*
Probab=25.93 E-value=5.3e+02 Score=26.12 Aligned_cols=147 Identities=11% Similarity=0.122 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHcCCcEEEEcCcccccCCCCCcccHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCchhHHHHHHcC--
Q 003819 614 AIKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDM-- 691 (793)
Q Consensus 614 al~~ev~~L~~aGv~~IQIDEPal~~~l~l~~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~C~g~~~~i~~~l~~l-- 691 (793)
...+.++.+.+.|+++|-|---+ ...+..+.++++++.++.. . ++.|.+-++.. ++++.-++.
T Consensus 26 ~a~~~a~~~v~~GAdiIDIg~g~-------~~v~~~ee~~rvv~~i~~~---~--~~pisIDT~~~---~v~~aAl~a~~ 90 (262)
T 1f6y_A 26 PVQEWARRQEEGGARALDLNVGP-------AVQDKVSAMEWLVEVTQEV---S--NLTLCLDSTNI---KAIEAGLKKCK 90 (262)
T ss_dssp HHHHHHHHHHHHTCSEEEEBCC-----------CHHHHHHHHHHHHHTT---C--CSEEEEECSCH---HHHHHHHHHCS
T ss_pred HHHHHHHHHHHCCCcEEEECCCC-------CCCChHHHHHHHHHHHHHh---C--CCeEEEeCCCH---HHHHHHHhhCC
Confidence 33445677788999999887411 1123456677888877642 1 35677777743 466665555
Q ss_pred CCcEEE-EecCCCCh-hhHHHhhhcccCCCeEeeeeecCC-CCCCCCHH----HHHHHHHHHHhh-cCCCcEEEcCCCCC
Q 003819 692 DADVIT-IENSRSDE-KLLSVFREGVKYRAGIGPGVYDIH-SPRIPSTE----EIADRINKMLAV-LESNILWVNPDCGL 763 (793)
Q Consensus 692 ~~D~is-iE~~r~~~-~~L~~~~~~~~~~~~i~~GVvD~~-s~~ves~e----ev~~~i~~al~~-i~~~~l~vsPdCGL 763 (793)
+++.|. +-....++ +.+...++ ++-.+.+=-.|.+ .| .+.+ ...++++.+.+. ++++++++.|..|.
T Consensus 91 Ga~iINdvs~~~d~~~~~~~~~a~---~~~~vvlmh~~~~G~p--~t~~~~~~~~~~~~~~a~~~Gi~~~~IilDPg~g~ 165 (262)
T 1f6y_A 91 NRAMINSTNAEREKVEKLFPLAVE---HGAALIGLTMNKTGIP--KDSDTRLAFAMELVAAADEFGLPMEDLYIDPLILP 165 (262)
T ss_dssp SCEEEEEECSCHHHHHHHHHHHHH---TTCEEEEESCCSSCSC--SSHHHHHHHHHHHHHHHHHHTCCGGGEEEECCCCC
T ss_pred CCCEEEECCCCcccHHHHHHHHHH---hCCcEEEEcCCCCCCC--CCHHHHHHHHHHHHHHHHHCCCCcccEEEeCCCCc
Confidence 777664 32111111 34454454 2332222222211 11 1333 334555555543 44579999999883
Q ss_pred CCCChhHHHHHHHHHHH
Q 003819 764 KTRKYSEVKPALSNMVA 780 (793)
Q Consensus 764 ~t~~~~~~~~kL~~mv~ 780 (793)
...+.+..+..|+++.+
T Consensus 166 ~g~~~~~~~~~l~~l~~ 182 (262)
T 1f6y_A 166 ANVAQDHAPEVLKTLQQ 182 (262)
T ss_dssp TTTCTTHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHH
Confidence 33444555566665544
No 121
>3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A*
Probab=25.82 E-value=3.7e+02 Score=28.36 Aligned_cols=87 Identities=15% Similarity=0.207 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHHHcCCcEEEEcCcc-------cccCCCCC----cccHH---HHHHHHHHHHHHHhcCCCCCCeEE
Q 003819 608 CYQIALAIKDEVEDLEKAGITVIQIDEAA-------LREGLPLR----KSEQD---FYLKWAVHSFRITNCGVQDTTQVH 673 (793)
Q Consensus 608 ~~~lA~al~~ev~~L~~aGv~~IQIDEPa-------l~~~l~l~----~~~~~---~~l~~av~a~~~~~~~v~~~~~I~ 673 (793)
..++...+.+-.+.+.++|++.|+|.--- |......+ ..+.. .++-..+++.+.++ .. .|.
T Consensus 139 I~~ii~~f~~aA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~avr~~v-~~----pv~ 213 (340)
T 3gr7_A 139 IEETVQAFQNGARRAKEAGFDVIEIHAAHGYLINEFLSPLSNRRQDEYGGSPENRYRFLGEVIDAVREVW-DG----PLF 213 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSEEEEEECTTCHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHC-CS----CEE
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHcCCCccCcCCCcccCCHHHHHHHHHHHHHHHHHhc-CC----ceE
Confidence 34566677777777888999999998431 11100011 11122 33445566666655 32 244
Q ss_pred EEeCCC----------CchhHHHHHHcCCCcEEEEe
Q 003819 674 THMCYS----------NFNDIIHSIMDMDADVITIE 699 (793)
Q Consensus 674 lH~C~g----------~~~~i~~~l~~l~~D~isiE 699 (793)
+-+.-. ++..+...+.+.++|.|++-
T Consensus 214 vRls~~~~~~~g~~~~~~~~la~~L~~~Gvd~i~vs 249 (340)
T 3gr7_A 214 VRISASDYHPDGLTAKDYVPYAKRMKEQGVDLVDVS 249 (340)
T ss_dssp EEEESCCCSTTSCCGGGHHHHHHHHHHTTCCEEEEE
T ss_pred EEeccccccCCCCCHHHHHHHHHHHHHcCCCEEEEe
Confidence 443322 23467778889999999985
No 122
>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*
Probab=25.74 E-value=1.5e+02 Score=28.69 Aligned_cols=64 Identities=16% Similarity=0.075 Sum_probs=37.6
Q ss_pred HHHHHHHHHCCCCEEEeeccccccCCChHHHHHHHHHHHHHHhccCCCcEEEE--eccCCCchhhHHHHhcCCCccEEEE
Q 003819 189 KEVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIE--TYFADVPAETYKILTSLKGVTGFGF 266 (793)
Q Consensus 189 ~~~l~~L~~aG~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~--tyfg~~~~~~~~~l~~lp~Vd~l~l 266 (793)
.+.++.+.+.|+++||++++. . ...+.+++..+.. +.++++. +... .+-++...+.. +|++++
T Consensus 22 ~~~~~~~~~~G~~~i~l~~~~----~--~~~~~i~~i~~~~-----~~~l~vg~g~~~~---~~~i~~a~~~G-ad~V~~ 86 (212)
T 2v82_A 22 LAHVGAVIDAGFDAVEIPLNS----P--QWEQSIPAIVDAY-----GDKALIGAGTVLK---PEQVDALARMG-CQLIVT 86 (212)
T ss_dssp HHHHHHHHHHTCCEEEEETTS----T--THHHHHHHHHHHH-----TTTSEEEEECCCS---HHHHHHHHHTT-CCEEEC
T ss_pred HHHHHHHHHCCCCEEEEeCCC----h--hHHHHHHHHHHhC-----CCCeEEEeccccC---HHHHHHHHHcC-CCEEEe
Confidence 345666778899999999874 1 1233333332222 2345552 2221 33467778888 999984
Q ss_pred E
Q 003819 267 D 267 (793)
Q Consensus 267 D 267 (793)
.
T Consensus 87 ~ 87 (212)
T 2v82_A 87 P 87 (212)
T ss_dssp S
T ss_pred C
Confidence 3
No 123
>2r14_A Morphinone reductase; H-tunnelling, flavoprotein, NADH, hydride transfer, oxidoreductase; HET: FMN TXD; 1.40A {Pseudomonas putida} PDB: 3gx9_A* 1gwj_A*
Probab=25.72 E-value=2.6e+02 Score=30.10 Aligned_cols=86 Identities=6% Similarity=0.048 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHcCCcEEEEcC-----------cccccCCCCCcccHHHHHHHH---HHHHHHHhcCCCCCCeEEEE
Q 003819 610 QIALAIKDEVEDLEKAGITVIQIDE-----------AALREGLPLRKSEQDFYLKWA---VHSFRITNCGVQDTTQVHTH 675 (793)
Q Consensus 610 ~lA~al~~ev~~L~~aGv~~IQIDE-----------Pal~~~l~l~~~~~~~~l~~a---v~a~~~~~~~v~~~~~I~lH 675 (793)
++...+.+-.+.+.++|++.|+|.- |..-.--+.-..+.....+.+ +++.+.++ +++ .|.+-
T Consensus 163 ~~i~~f~~aA~~a~~aGfDgVEIh~a~GYLl~QFlsp~~N~R~D~yGGslenR~r~~~eiv~aVr~av---g~~-~v~vr 238 (377)
T 2r14_A 163 GIVEDYRQAAQRAKRAGFDMVEVHAANACLPNQFLATGTNRRTDQYGGSIENRARFPLEVVDAVAEVF---GPE-RVGIR 238 (377)
T ss_dssp HHHHHHHHHHHHHHHHTCSEEEEEECTTCHHHHHHSTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHH---CGG-GEEEE
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEcCcccchHHhccCCccccCCCccCcchhhchHHHHHHHHHHHHHc---CCC-cEEEE
Confidence 4455555566667789999999984 221100000011122333344 55555544 322 35555
Q ss_pred eCCC---------C----chhHHHHHHcCCCcEEEEe
Q 003819 676 MCYS---------N----FNDIIHSIMDMDADVITIE 699 (793)
Q Consensus 676 ~C~g---------~----~~~i~~~l~~l~~D~isiE 699 (793)
+.-. + +..+...+.+.++|.|++-
T Consensus 239 ls~~~~~~~~~~~~~~~~~~~la~~le~~Gvd~i~v~ 275 (377)
T 2r14_A 239 LTPFLELFGLTDDEPEAMAFYLAGELDRRGLAYLHFN 275 (377)
T ss_dssp ECTTCCCTTCCCSCHHHHHHHHHHHHHHTTCSEEEEE
T ss_pred eccccccCCCCCCCCHHHHHHHHHHHHHcCCCEEEEe
Confidence 5321 1 2345677788999999985
No 124
>1vyr_A Pentaerythritol tetranitrate reductase; oxidoreductase, flavoenzyme, explosive degradation, steroid binding; HET: FMN TNF; 0.9A {Enterobacter cloacae} SCOP: c.1.4.1 PDB: 1gvq_A* 1gvr_A* 1gvs_A* 1h50_A* 1h51_A* 1h60_A* 1h61_A* 1h62_A* 1h63_A* 1gvo_A* 2aba_A* 3f03_K* 3kft_A* 3p7y_A* 3p80_A* 3p81_A* 3p62_A* 3p8i_A* 2abb_A* 3p67_A* ...
Probab=25.59 E-value=3e+02 Score=29.42 Aligned_cols=90 Identities=6% Similarity=0.075 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHcCCcEEEEcC-----------cccccCCCCCcccHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCC
Q 003819 610 QIALAIKDEVEDLEKAGITVIQIDE-----------AALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCY 678 (793)
Q Consensus 610 ~lA~al~~ev~~L~~aGv~~IQIDE-----------Pal~~~l~l~~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~C~ 678 (793)
++...+.+-.+.+.++|++.|+|.- |..-.--+.-..+.....+.+.+.++.+-+.++++ .|.+-+.-
T Consensus 158 ~~i~~f~~aA~~a~~aGfDgVeih~a~GyLl~qFlsp~~N~R~D~yGGslenr~r~~~eiv~avr~~vg~~-~v~vrls~ 236 (364)
T 1vyr_A 158 GIVNDFRQAVANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAVCNEWSAD-RIGIRVSP 236 (364)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHSCGG-GEEEEECC
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEcCccchHHHhccCCcccccCCcCCcchhcChhhHHHHHHHHHHhcCCC-cEEEEEcc
Confidence 4455555566667889999999974 22110000001113333444444444444444433 45553332
Q ss_pred CC--------------chhHHHHHHcCCCcEEEEec
Q 003819 679 SN--------------FNDIIHSIMDMDADVITIEN 700 (793)
Q Consensus 679 g~--------------~~~i~~~l~~l~~D~isiE~ 700 (793)
++ +..+...+.+.++|.|++-.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~a~~l~~~G~d~i~v~~ 272 (364)
T 1vyr_A 237 IGTFQNVDNGPNEEADALYLIEELAKRGIAYLHMSE 272 (364)
T ss_dssp SSCBTTBCCCTTHHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCCCEEEEec
Confidence 21 22356777889999999863
No 125
>3t7v_A Methylornithine synthase PYLB; TIM-barrel fold, mutase, [4Fe-4S]-cluster, SAM, lysine, transferase; HET: SAM MD0; 1.50A {Methanosarcina barkeri}
Probab=25.52 E-value=4.4e+02 Score=27.38 Aligned_cols=131 Identities=20% Similarity=0.196 Sum_probs=75.4
Q ss_pred HHHHHHCCCCEEEe--ec-cccccCCChHHHHHHHHHHHHHHhccCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEEe
Q 003819 192 VAELKAAGATWIQF--DE-PTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDL 268 (793)
Q Consensus 192 l~~L~~aG~~~VQi--DE-P~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~lp~Vd~l~lD~ 268 (793)
++++.+.|++.|-| .| |.+..+ .+.+.+..+.+.+.. ++.+.++ -|.+..+.+..|.+.. ++.+.+.+
T Consensus 100 ~~~~~~~G~~~i~l~gGe~p~~~~~-----~~~~~~l~~~ik~~~-~i~i~~s--~g~~~~e~l~~L~~aG-~~~i~i~l 170 (350)
T 3t7v_A 100 CKTLKGAGFHMVDLTMGEDPYYYED-----PNRFVELVQIVKEEL-GLPIMIS--PGLMDNATLLKAREKG-ANFLALYQ 170 (350)
T ss_dssp HHHHTTSCCSEEEEEECCCHHHHHS-----THHHHHHHHHHHHHH-CSCEEEE--CSSCCHHHHHHHHHTT-EEEEECCC
T ss_pred HHHHHHCCCCEEEEeeCCCCccccC-----HHHHHHHHHHHHhhc-CceEEEe--CCCCCHHHHHHHHHcC-CCEEEEee
Confidence 34456789986644 45 653211 233444455554322 2455443 3433366788999988 99888755
Q ss_pred ccC----------CCChhhHhhh---C-CCCCEEEEEEeeCCCCCCCCHHHHHHHHHHHhhhcCCCcEEEeCCCCCcccc
Q 003819 269 IRG----------TKTLDLIKTE---F-PLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVSTSCSLLHTA 334 (793)
Q Consensus 269 ~~~----------~~~l~~l~~~---~-p~~k~l~lGvVdgrn~w~ed~~~i~~~i~~~~~~v~~e~l~vspsCgL~hvP 334 (793)
... ..+++.+.+. + ..+-.+..|++=|- -++.+++.+.++.+.+ ++++.+.+.+=.+.-.+|
T Consensus 171 Et~~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Gl---get~e~~~~~l~~l~~-l~~~~v~~~~f~p~~gT~ 246 (350)
T 3t7v_A 171 ETYDTELYRKLRVGQSFDGRVNARRFAKQQGYCVEDGILTGV---GNDIESTILSLRGMST-NDPDMVRVMTFLPQEGTP 246 (350)
T ss_dssp BCSCHHHHHHHSTTCCHHHHHHHHHHHHHHTCEEEEEEEESS---SCCHHHHHHHHHHHHH-TCCSEEEEEECCCCTTST
T ss_pred ecCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCeEccceEeec---CCCHHHHHHHHHHHHh-CCCCEEEecceeeCCCCc
Confidence 421 1233332211 1 12346888999887 4788888888877765 566778877655544444
Q ss_pred c
Q 003819 335 V 335 (793)
Q Consensus 335 ~ 335 (793)
.
T Consensus 247 l 247 (350)
T 3t7v_A 247 L 247 (350)
T ss_dssp T
T ss_pred C
Confidence 3
No 126
>2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=25.29 E-value=5.7e+02 Score=26.25 Aligned_cols=149 Identities=9% Similarity=0.067 Sum_probs=81.9
Q ss_pred HHHHHHHHHcCCcEEEEcCcccccCCCCCcccHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCchhHHHHHHcCCCcE
Q 003819 616 KDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDADV 695 (793)
Q Consensus 616 ~~ev~~L~~aGv~~IQIDEPal~~~l~l~~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~C~g~~~~i~~~l~~l~~D~ 695 (793)
.+.++.|.++|+++|.+=-|.-....|.. .+.. +.++.+.+ . +.+.+.+|++ +.. -++...+.+++.
T Consensus 33 ~~i~~~L~~~Gv~~IE~g~~~~~~~~~~~-~d~~-------~~~~~~~~-~-~~~~~~~l~~--~~~-~i~~a~~aG~~~ 99 (302)
T 2ftp_A 33 IRLVDDLSAAGLDYIEVGSFVSPKWVPQM-AGSA-------EVFAGIRQ-R-PGVTYAALAP--NLK-GFEAALESGVKE 99 (302)
T ss_dssp HHHHHHHHHTTCSEEEEEECSCTTTCGGG-TTHH-------HHHHHSCC-C-TTSEEEEECC--SHH-HHHHHHHTTCCE
T ss_pred HHHHHHHHHcCcCEEEECCCcCccccccc-cCHH-------HHHHHhhh-c-CCCEEEEEeC--CHH-HHHHHHhCCcCE
Confidence 34466788899999887432211111111 1111 12333322 2 3567888873 554 456677789999
Q ss_pred EEEecCCCC-----------hhhHHHhhhc----ccCCCeEeeeeecCCCC---CCCCHHHHHHHHHHHHhhcCCCcEEE
Q 003819 696 ITIENSRSD-----------EKLLSVFREG----VKYRAGIGPGVYDIHSP---RIPSTEEIADRINKMLAVLESNILWV 757 (793)
Q Consensus 696 isiE~~r~~-----------~~~L~~~~~~----~~~~~~i~~GVvD~~s~---~ves~eev~~~i~~al~~i~~~~l~v 757 (793)
+.+-.+.++ .+.++.+.+. ...+..+-..+-.+-+. -.-+++.+.+.++++.+ .|++.+.+
T Consensus 100 v~i~~~~s~~~~~~~~~~s~ee~l~~~~~~v~~a~~~G~~V~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~-~G~d~i~l 178 (302)
T 2ftp_A 100 VAVFAAASEAFSQRNINCSIKDSLERFVPVLEAARQHQVRVRGYISCVLGCPYDGDVDPRQVAWVARELQQ-MGCYEVSL 178 (302)
T ss_dssp EEEEEESCHHHHHHHHSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCBTTTBCCCHHHHHHHHHHHHH-TTCSEEEE
T ss_pred EEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEEEeeCCcCCCCCHHHHHHHHHHHHH-cCCCEEEE
Confidence 998432222 1222222111 12344443222222111 24588999888888876 58999999
Q ss_pred cCCCCCCCCChhHHHHHHHHHHH
Q 003819 758 NPDCGLKTRKYSEVKPALSNMVA 780 (793)
Q Consensus 758 sPdCGL~t~~~~~~~~kL~~mv~ 780 (793)
...-|. .+|.+...-++.+.+
T Consensus 179 ~DT~G~--~~P~~~~~lv~~l~~ 199 (302)
T 2ftp_A 179 GDTIGV--GTAGATRRLIEAVAS 199 (302)
T ss_dssp EESSSC--CCHHHHHHHHHHHTT
T ss_pred eCCCCC--cCHHHHHHHHHHHHH
Confidence 877777 467777666666544
No 127
>1ete_A FLT3 ligand; four-helix bundle, cytokine; 2.20A {Homo sapiens} SCOP: a.26.1.2 PDB: 3qs7_A* 3qs9_A
Probab=25.11 E-value=42 Score=30.12 Aligned_cols=13 Identities=23% Similarity=0.652 Sum_probs=11.6
Q ss_pred eCCCCCccccccc
Q 003819 325 STSCSLLHTAVDL 337 (793)
Q Consensus 325 spsCgL~hvP~~~ 337 (793)
+|+|+|.|.|++-
T Consensus 1 ~pdCsF~~SPISS 13 (134)
T 1ete_A 1 TQDCSFQHSPISS 13 (134)
T ss_dssp CCCCCCSSCCCCT
T ss_pred CCCCccCCCcchh
Confidence 5899999999984
No 128
>1icp_A OPR1, 12-oxophytodienoate reductase 1; beta-alpha-barrel, protein-FMN-PEG complex, oxidoreductase; HET: FMN 2PE; 1.90A {Solanum lycopersicum} SCOP: c.1.4.1 PDB: 1icq_A* 1ics_A* 3hgr_A* 1vji_A* 2q3r_A*
Probab=25.10 E-value=2.8e+02 Score=29.74 Aligned_cols=89 Identities=13% Similarity=0.143 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHcCCcEEEEcCcc---cccCC-CC---Cc----ccHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCC
Q 003819 610 QIALAIKDEVEDLEKAGITVIQIDEAA---LREGL-PL---RK----SEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCY 678 (793)
Q Consensus 610 ~lA~al~~ev~~L~~aGv~~IQIDEPa---l~~~l-~l---~~----~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~C~ 678 (793)
++...+.+-.+.+.++|++.|+|+--- +...+ |. +. .+.....+.+.+.++.+-+.++++ .|.+-+.-
T Consensus 164 ~~i~~f~~AA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~aVr~avg~~-~V~vrls~ 242 (376)
T 1icp_A 164 QIVNEFRVAARNAIEAGFDGVEIHGAHGYLIDQFMKDQVNDRSDKYGGSLENRCRFALEIVEAVANEIGSD-RVGIRISP 242 (376)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGG-GEEEEECT
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEcCccchhhhhccCCcccCCCCccCccHHHhHHHHHHHHHHHHHHhcCC-ceEEEecc
Confidence 445555556667778999999998521 00000 11 11 113333344443333333333322 34444431
Q ss_pred ---------CC----chhHHHHHHcCCCcEEEEe
Q 003819 679 ---------SN----FNDIIHSIMDMDADVITIE 699 (793)
Q Consensus 679 ---------g~----~~~i~~~l~~l~~D~isiE 699 (793)
++ +..+.+.+.+.++|.|++-
T Consensus 243 ~~~~~g~~~~~~~~~~~~la~~le~~Gvd~i~v~ 276 (376)
T 1icp_A 243 FAHYNEAGDTNPTALGLYMVESLNKYDLAYCHVV 276 (376)
T ss_dssp TCCTTTCCCSCHHHHHHHHHHHHGGGCCSEEEEE
T ss_pred ccccCCCCCCCCHHHHHHHHHHHHHcCCCEEEEc
Confidence 11 2456777888999999885
No 129
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}
Probab=25.01 E-value=1.2e+02 Score=31.82 Aligned_cols=62 Identities=19% Similarity=0.164 Sum_probs=38.1
Q ss_pred HHHHHHHHcCCcEEEEcCcccccCCCCCcccHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCchhHHHHHHcCCCcEE
Q 003819 617 DEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDADVI 696 (793)
Q Consensus 617 ~ev~~L~~aGv~~IQIDEPal~~~l~l~~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~C~g~~~~i~~~l~~l~~D~i 696 (793)
+|+++..++|+++|++|.+.. +.+..++...+ +. +.+-...|--.+.+..+.+.++|.|
T Consensus 209 ~ea~eAl~aGaD~I~LDn~~~------------~~l~~av~~~~-------~~--v~ieaSGGIt~~~i~~~a~tGVD~I 267 (287)
T 3tqv_A 209 DELNQAIAAKADIVMLDNFSG------------EDIDIAVSIAR-------GK--VALEVSGNIDRNSIVAIAKTGVDFI 267 (287)
T ss_dssp HHHHHHHHTTCSEEEEESCCH------------HHHHHHHHHHT-------TT--CEEEEESSCCTTTHHHHHTTTCSEE
T ss_pred HHHHHHHHcCCCEEEEcCCCH------------HHHHHHHHhhc-------CC--ceEEEECCCCHHHHHHHHHcCCCEE
Confidence 455556678999999998443 12333443332 12 2333342323456788999999999
Q ss_pred EEe
Q 003819 697 TIE 699 (793)
Q Consensus 697 siE 699 (793)
|+=
T Consensus 268 svG 270 (287)
T 3tqv_A 268 SVG 270 (287)
T ss_dssp ECS
T ss_pred EEC
Confidence 984
No 130
>1j6o_A TATD-related deoxyribonuclease; structural genomics, TM0667, JCSG, PSI, protein structure initiative, joint center for structural genomics; 1.80A {Thermotoga maritima} SCOP: c.1.9.12
Probab=24.88 E-value=2.8e+02 Score=27.73 Aligned_cols=23 Identities=30% Similarity=0.686 Sum_probs=18.9
Q ss_pred HHHHHhhhcCCCcEEEeCCCCCc
Q 003819 309 TLQDLAGTVGKDKVVVSTSCSLL 331 (793)
Q Consensus 309 ~i~~~~~~v~~e~l~vspsCgL~ 331 (793)
.++++.+.+|.+||.++|||++.
T Consensus 196 ~l~~~i~~~~~driL~eTD~P~~ 218 (268)
T 1j6o_A 196 ALREVVKRVGLEYIVLETDCPFL 218 (268)
T ss_dssp HHHHHHHHHCGGGEEECCCBTSC
T ss_pred HHHHHHHhCChhhEEEecCCCCC
Confidence 45666777889999999999875
No 131
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1
Probab=24.72 E-value=82 Score=31.38 Aligned_cols=71 Identities=8% Similarity=0.069 Sum_probs=42.5
Q ss_pred HHHHHHHCCCCEEEeeccccccCCChHHHHHHHHHHHHHHhccCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEEec
Q 003819 191 VVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDLI 269 (793)
Q Consensus 191 ~l~~L~~aG~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~lp~Vd~l~lD~~ 269 (793)
.++.+.++|+++||+-++.-... . .....+....+.+.. ++++++..++-+. .. +..+.+.. +|++++--.
T Consensus 36 ~a~~~~~~Gad~i~v~d~~~~~~-~---~~~~~~~i~~i~~~~-~iPvi~~Ggi~~~-~~-~~~~~~~G-ad~V~lg~~ 106 (252)
T 1ka9_F 36 AARAYDEAGADELVFLDISATHE-E---RAILLDVVARVAERV-FIPLTVGGGVRSL-ED-ARKLLLSG-ADKVSVNSA 106 (252)
T ss_dssp HHHHHHHHTCSCEEEEECCSSTT-C---HHHHHHHHHHHHTTC-CSCEEEESSCCSH-HH-HHHHHHHT-CSEEEECHH
T ss_pred HHHHHHHcCCCEEEEEcCCcccc-C---ccccHHHHHHHHHhC-CCCEEEECCcCCH-HH-HHHHHHcC-CCEEEEChH
Confidence 44556778999999976643211 1 111223334444433 4678888777655 43 55666677 999998643
No 132
>3iix_A Biotin synthetase, putative; adoMet radical, SAM radical, adoMet cleavage, Fe4S4 cluster, HYDE, hydrogenase, maturation, beta barrel; HET: OTY CSO 5AD CPS; 1.25A {Thermotoga maritima} PDB: 3ciw_A* 3iiz_A* 3cix_A*
Probab=23.88 E-value=5.3e+02 Score=26.52 Aligned_cols=82 Identities=12% Similarity=0.133 Sum_probs=44.6
Q ss_pred chhHHHHHHcCCCcEEEEe--cCC---------C-C-hhhHHHhhhcccCCCeEeeeeecCCCCCCCCHHHHHHHHHHHH
Q 003819 681 FNDIIHSIMDMDADVITIE--NSR---------S-D-EKLLSVFREGVKYRAGIGPGVYDIHSPRIPSTEEIADRINKML 747 (793)
Q Consensus 681 ~~~i~~~l~~l~~D~isiE--~~r---------~-~-~~~L~~~~~~~~~~~~i~~GVvD~~s~~ves~eev~~~i~~al 747 (793)
..+.+..+.+.++|.+.+- +.. . . .+.++.++.....+-.+..|++-+.. -++.+++.+.+..+.
T Consensus 141 ~~e~l~~L~~ag~~~v~i~let~~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~G~p--~et~e~~~~~~~~l~ 218 (348)
T 3iix_A 141 PREYYEKWKEAGADRYLLRHETANPVLHRKLRPDTSFENRLNCLLTLKELGYETGAGSMVGLP--GQTIDDLVDDLLFLK 218 (348)
T ss_dssp CHHHHHHHHHHTCCEEECCCBCSCHHHHHHHSTTSCHHHHHHHHHHHHHTTCEEEECBEESCT--TCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCEEeeeeeeCCHHHHHHhCCCcCHHHHHHHHHHHHHhCCeeccceEEeCC--CCCHHHHHHHHHHHH
Confidence 3678889998888887654 321 0 1 11222222211123457777776652 257888877776664
Q ss_pred hhcCCCcEEE-----cCCCCCCC
Q 003819 748 AVLESNILWV-----NPDCGLKT 765 (793)
Q Consensus 748 ~~i~~~~l~v-----sPdCGL~t 765 (793)
+ ++++.+.+ .|+..|..
T Consensus 219 ~-l~~~~i~i~~~~p~~gt~l~~ 240 (348)
T 3iix_A 219 E-HDFDMVGIGPFIPHPDTPLAN 240 (348)
T ss_dssp H-HTCSEECCEECCCCTTSTTTT
T ss_pred h-cCCCEEeeeeeecCCCCCccc
Confidence 4 45554333 34555543
No 133
>2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus} PDB: 2yw4_A
Probab=23.83 E-value=3.1e+02 Score=26.67 Aligned_cols=82 Identities=11% Similarity=0.117 Sum_probs=47.4
Q ss_pred HHHHHHHcCCcEEEEcCcccccCCCCCcccHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCchhHHHHHHcCCCcEEE
Q 003819 618 EVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDADVIT 697 (793)
Q Consensus 618 ev~~L~~aGv~~IQIDEPal~~~l~l~~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~C~g~~~~i~~~l~~l~~D~is 697 (793)
-++.+.+.|+++||+.+-. .+ ..+.++.+.+ + +..+...+.. .++-++...+.++|.++
T Consensus 30 ~~~~l~~gGv~~iel~~k~---------~~-------~~~~i~~~~~--~-~~~~gag~vl--~~d~~~~A~~~GAd~v~ 88 (207)
T 2yw3_A 30 LARVLEEEGVGALEITLRT---------EK-------GLEALKALRK--S-GLLLGAGTVR--SPKEAEAALEAGAAFLV 88 (207)
T ss_dssp HHHHHHHTTCCEEEEECSS---------TH-------HHHHHHHHTT--S-SCEEEEESCC--SHHHHHHHHHHTCSEEE
T ss_pred HHHHHHHcCCCEEEEeCCC---------hH-------HHHHHHHHhC--C-CCEEEeCeEe--eHHHHHHHHHcCCCEEE
Confidence 3556778899999998521 11 1234444444 2 3345555443 24677888889999998
Q ss_pred EecCCCChhhHHHhhhcccCCCeEeeee
Q 003819 698 IENSRSDEKLLSVFREGVKYRAGIGPGV 725 (793)
Q Consensus 698 iE~~r~~~~~L~~~~~~~~~~~~i~~GV 725 (793)
.-. .+.+..+..+. ++..+.+|+
T Consensus 89 ~~~--~d~~v~~~~~~---~g~~~i~G~ 111 (207)
T 2yw3_A 89 SPG--LLEEVAALAQA---RGVPYLPGV 111 (207)
T ss_dssp ESS--CCHHHHHHHHH---HTCCEEEEE
T ss_pred cCC--CCHHHHHHHHH---hCCCEEecC
Confidence 652 34444454443 234466774
No 134
>1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5
Probab=23.30 E-value=6.6e+02 Score=26.31 Aligned_cols=135 Identities=7% Similarity=-0.079 Sum_probs=79.1
Q ss_pred HHHHHHHHCCCCEEEee--------ccccccCCChHHHHHHHHHHHHHHhccCCCcEEEEeccCCCchhhHHHHhcCCCc
Q 003819 190 EVVAELKAAGATWIQFD--------EPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGV 261 (793)
Q Consensus 190 ~~l~~L~~aG~~~VQiD--------EP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~lp~V 261 (793)
++++.|.++|++.|.+= .|.+..-. ....+.++. +.+..+++++.+-++.+....+-++...+.. |
T Consensus 34 ~i~~~L~~~Gvd~IEvG~~~g~p~ssp~~g~~~-~~~~e~l~~----i~~~~~~~~i~~l~~p~~~~~~~i~~a~~aG-v 107 (345)
T 1nvm_A 34 AIARALDKAKVDSIEVAHGDGLQGSSFNYGFGR-HTDLEYIEA----VAGEISHAQIATLLLPGIGSVHDLKNAYQAG-A 107 (345)
T ss_dssp HHHHHHHHHTCSEEECSCTTSTTCCBTTTBCCS-SCHHHHHHH----HHTTCSSSEEEEEECBTTBCHHHHHHHHHHT-C
T ss_pred HHHHHHHHcCCCEEEEecCCCCCCCCCcccCCC-CCHHHHHHH----HHhhCCCCEEEEEecCCcccHHHHHHHHhCC-c
Confidence 45566778899999992 34432211 123343333 3232234555444343321134466666777 9
Q ss_pred cEEEEEeccC-CCChhhHhhhC-CCCCEEEEEEeeCCCCCCCCHHHHHHHHHHHhhhcCCCcEEEeCCCCCccccc
Q 003819 262 TGFGFDLIRG-TKTLDLIKTEF-PLGKYLFAGVVDGRNIWANDLASSLTTLQDLAGTVGKDKVVVSTSCSLLHTAV 335 (793)
Q Consensus 262 d~l~lD~~~~-~~~l~~l~~~~-p~~k~l~lGvVdgrn~w~ed~~~i~~~i~~~~~~v~~e~l~vspsCgL~hvP~ 335 (793)
|++++-..-+ .+......+.. ..+..+...+-|+ .+.+++.+.+.++.+.+ .|.+.|.+.-.-|.+. |.
T Consensus 108 d~v~I~~~~s~~~~~~~~i~~ak~~G~~v~~~~~~a---~~~~~e~~~~ia~~~~~-~Ga~~i~l~DT~G~~~-P~ 178 (345)
T 1nvm_A 108 RVVRVATHCTEADVSKQHIEYARNLGMDTVGFLMMS---HMIPAEKLAEQGKLMES-YGATCIYMADSGGAMS-MN 178 (345)
T ss_dssp CEEEEEEETTCGGGGHHHHHHHHHHTCEEEEEEEST---TSSCHHHHHHHHHHHHH-HTCSEEEEECTTCCCC-HH
T ss_pred CEEEEEEeccHHHHHHHHHHHHHHCCCEEEEEEEeC---CCCCHHHHHHHHHHHHH-CCCCEEEECCCcCccC-HH
Confidence 9999864322 12333322211 1356777777665 57788999888888876 4778999999999874 54
No 135
>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor}
Probab=22.47 E-value=1.3e+02 Score=32.02 Aligned_cols=61 Identities=20% Similarity=0.210 Sum_probs=37.2
Q ss_pred HHHHHHHcCCcEEEEcCcccccCCCCCcccHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCchhHHHHHHcCCCcEEE
Q 003819 618 EVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDADVIT 697 (793)
Q Consensus 618 ev~~L~~aGv~~IQIDEPal~~~l~l~~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~C~g~~~~i~~~l~~l~~D~is 697 (793)
|+++..++|+++|++|-..+ +.+..++..++ +.+.| =...|--.+.+..+.+.++|.|+
T Consensus 243 ea~eAl~aGaD~I~LDn~~~------------~~l~~av~~l~-------~~v~i--eaSGGIt~~~I~~~a~tGVD~is 301 (320)
T 3paj_A 243 ELEEAISAGADIIMLDNFSL------------EMMREAVKINA-------GRAAL--ENSGNITLDNLKECAETGVDYIS 301 (320)
T ss_dssp HHHHHHHTTCSEEEEESCCH------------HHHHHHHHHHT-------TSSEE--EEESSCCHHHHHHHHTTTCSEEE
T ss_pred HHHHHHHcCCCEEEECCCCH------------HHHHHHHHHhC-------CCCeE--EEECCCCHHHHHHHHHcCCCEEE
Confidence 44445568999999998432 22344444332 22333 23323234677889999999998
Q ss_pred Ee
Q 003819 698 IE 699 (793)
Q Consensus 698 iE 699 (793)
+=
T Consensus 302 vG 303 (320)
T 3paj_A 302 VG 303 (320)
T ss_dssp CT
T ss_pred EC
Confidence 74
No 136
>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei}
Probab=22.25 E-value=1.4e+02 Score=31.32 Aligned_cols=62 Identities=16% Similarity=0.137 Sum_probs=39.0
Q ss_pred HHHHHHHCCCCEEEeeccccccCCChHHHHHHHHHHHHHHhccCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEEe
Q 003819 191 VVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDL 268 (793)
Q Consensus 191 ~l~~L~~aG~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~lp~Vd~l~lD~ 268 (793)
++++..++|++.||+|-.. . +.++++.+.+.. ++++..+ |++..+++..+.+.. ||.|++=.
T Consensus 221 e~~eAl~aGaD~I~LDn~~------~---~~l~~av~~i~~---~v~ieaS---GGI~~~~i~~~a~tG-VD~isvG~ 282 (298)
T 3gnn_A 221 QLRTALAHGARSVLLDNFT------L---DMMRDAVRVTEG---RAVLEVS---GGVNFDTVRAIAETG-VDRISIGA 282 (298)
T ss_dssp HHHHHHHTTCEEEEEESCC------H---HHHHHHHHHHTT---SEEEEEE---SSCSTTTHHHHHHTT-CSEEECGG
T ss_pred HHHHHHHcCCCEEEECCCC------H---HHHHHHHHHhCC---CCeEEEE---cCCCHHHHHHHHHcC-CCEEEECC
Confidence 4455567899999999632 2 334444444422 3445444 666456788899998 99887643
No 137
>1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1
Probab=22.14 E-value=2.1e+02 Score=28.56 Aligned_cols=84 Identities=11% Similarity=0.158 Sum_probs=47.3
Q ss_pred HHHHHHHcCCcEEEEcCcccccCCCCCcccHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCchhHHHHHHcCCCcEEE
Q 003819 618 EVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDADVIT 697 (793)
Q Consensus 618 ev~~L~~aGv~~IQIDEPal~~~l~l~~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~C~g~~~~i~~~l~~l~~D~is 697 (793)
-++.+.+.|+++||+.+-. ... .+.++...+..+ +..+...+.. .++-++...+.++|.++
T Consensus 43 ~~~al~~gGv~~iel~~k~---------~~~-------~~~i~~l~~~~~-~~~igagtvl--~~d~~~~A~~aGAd~v~ 103 (225)
T 1mxs_A 43 LADALAAGGIRTLEVTLRS---------QHG-------LKAIQVLREQRP-ELCVGAGTVL--DRSMFAAVEAAGAQFVV 103 (225)
T ss_dssp HHHHHHHTTCCEEEEESSS---------THH-------HHHHHHHHHHCT-TSEEEEECCC--SHHHHHHHHHHTCSSEE
T ss_pred HHHHHHHCCCCEEEEecCC---------ccH-------HHHHHHHHHhCc-ccEEeeCeEe--eHHHHHHHHHCCCCEEE
Confidence 4566788999999998521 111 223333333443 3445444443 23667788889999998
Q ss_pred EecCCCChhhHHHhhhcccCCCeEeeee
Q 003819 698 IENSRSDEKLLSVFREGVKYRAGIGPGV 725 (793)
Q Consensus 698 iE~~r~~~~~L~~~~~~~~~~~~i~~GV 725 (793)
.- ..+.+..+.-+. ++..+.+|+
T Consensus 104 ~p--~~d~~v~~~~~~---~g~~~i~G~ 126 (225)
T 1mxs_A 104 TP--GITEDILEAGVD---SEIPLLPGI 126 (225)
T ss_dssp CS--SCCHHHHHHHHH---CSSCEECEE
T ss_pred eC--CCCHHHHHHHHH---hCCCEEEee
Confidence 54 224444444333 334566674
No 138
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}
Probab=22.08 E-value=88 Score=31.48 Aligned_cols=71 Identities=8% Similarity=-0.080 Sum_probs=42.3
Q ss_pred HHHHHHHHCCCCEEEeeccccccCCChHHHHHHHHHHHHHHhccCCCcEEEEeccCCCchhhHHHHhcCCCccEEEEEe
Q 003819 190 EVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGFDL 268 (793)
Q Consensus 190 ~~l~~L~~aG~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~lp~Vd~l~lD~ 268 (793)
+.++.+.++|+++|++-++.-.........+.+ ..+.+.. .+++++..++.+. .+ +..+.+.. +|++++--
T Consensus 34 ~~a~~~~~~Ga~~i~v~d~~~~~~~~g~~~~~i----~~i~~~~-~iPvi~~ggi~~~-~~-i~~~~~~G-ad~v~lg~ 104 (266)
T 2w6r_A 34 DWVVEVEKRGAGEILLTSIDRDGTKSGYDTEMI----RFVRPLT-TLPIIASGGAGKM-EH-FLEAFLAG-ADKALAAS 104 (266)
T ss_dssp HHHHHHHHHTCSEEEEEETTTSSCSSCCCHHHH----HHHGGGC-CSCEEEESCCCST-HH-HHHHHHHT-CSEEECCC
T ss_pred HHHHHHHHCCCCEEEEEecCcccCCCcccHHHH----HHHHHhc-CCCEEEECCCCCH-HH-HHHHHHcC-CcHhhhhH
Confidence 345556788999999966543211111123333 3343332 3678888777776 55 44555677 99988863
No 139
>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei}
Probab=22.01 E-value=1.5e+02 Score=31.07 Aligned_cols=61 Identities=16% Similarity=0.191 Sum_probs=36.8
Q ss_pred HHHHHHHcCCcEEEEcCcccccCCCCCcccHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCchhHHHHHHcCCCcEEE
Q 003819 618 EVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDADVIT 697 (793)
Q Consensus 618 ev~~L~~aGv~~IQIDEPal~~~l~l~~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~C~g~~~~i~~~l~~l~~D~is 697 (793)
|+++..++|+++|++|...+. .+..++... .+ ++.+-...|--.+-+..+.+.++|.||
T Consensus 221 e~~eAl~aGaD~I~LDn~~~~------------~l~~av~~i-------~~--~v~ieaSGGI~~~~i~~~a~tGVD~is 279 (298)
T 3gnn_A 221 QLRTALAHGARSVLLDNFTLD------------MMRDAVRVT-------EG--RAVLEVSGGVNFDTVRAIAETGVDRIS 279 (298)
T ss_dssp HHHHHHHTTCEEEEEESCCHH------------HHHHHHHHH-------TT--SEEEEEESSCSTTTHHHHHHTTCSEEE
T ss_pred HHHHHHHcCCCEEEECCCCHH------------HHHHHHHHh-------CC--CCeEEEEcCCCHHHHHHHHHcCCCEEE
Confidence 344445589999999984431 233333332 12 234444433234567889999999999
Q ss_pred Ee
Q 003819 698 IE 699 (793)
Q Consensus 698 iE 699 (793)
+=
T Consensus 280 vG 281 (298)
T 3gnn_A 280 IG 281 (298)
T ss_dssp CG
T ss_pred EC
Confidence 86
No 140
>2gou_A Oxidoreductase, FMN-binding; OLD yeallow enzyme, flavoenzyme; HET: BOG FMN PE4; 1.40A {Shewanella oneidensis} PDB: 2gq8_A* 2gq9_A* 2gqa_A*
Probab=22.01 E-value=4e+02 Score=28.36 Aligned_cols=88 Identities=9% Similarity=0.072 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHcCCcEEEEcC-----------cccccCCCCCcccHHH---HHHHHHHHHHHHhcCCCCCCeEEE
Q 003819 609 YQIALAIKDEVEDLEKAGITVIQIDE-----------AALREGLPLRKSEQDF---YLKWAVHSFRITNCGVQDTTQVHT 674 (793)
Q Consensus 609 ~~lA~al~~ev~~L~~aGv~~IQIDE-----------Pal~~~l~l~~~~~~~---~l~~av~a~~~~~~~v~~~~~I~l 674 (793)
.++...+.+-.+.+.++|++.|+|.- |..-.--+.-..+... +....+++.+.++ +++ .|.+
T Consensus 157 ~~~i~~f~~aA~~a~~aGfDgVeih~a~gYLl~qFlsp~~N~R~D~yGGslenr~r~~~eiv~avr~~v---g~~-pv~v 232 (365)
T 2gou_A 157 AQVIADYRQAALNAMEAGFDGIELHAANGYLINQFIDSEANNRSDEYGGSLENRLRFLDEVVAALVDAI---GAE-RVGV 232 (365)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEEEECCTTSHHHHHHSGGGCCCCSTTSSSHHHHTHHHHHHHHHHHHHH---CGG-GEEE
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEecccchhHhhccCCCccCcCcccCcchhhhHHHHHHHHHHHHHHc---CCC-cEEE
Confidence 44555666666777889999999975 3321000000111222 3334455555554 222 3444
Q ss_pred EeCC-CC------------chhHHHHHHcCCCcEEEEec
Q 003819 675 HMCY-SN------------FNDIIHSIMDMDADVITIEN 700 (793)
Q Consensus 675 H~C~-g~------------~~~i~~~l~~l~~D~isiE~ 700 (793)
-+.- +. +..+...+.+.++|.|++-.
T Consensus 233 ris~~~~~~~~~~~~~~~~~~~~a~~l~~~G~d~i~v~~ 271 (365)
T 2gou_A 233 RLAPLTTLNGTVDADPILTYTAAAALLNKHRIVYLHIAE 271 (365)
T ss_dssp EECSSCCTTSCCCSSHHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred EEccccccCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeC
Confidence 3331 11 23456778889999999863
No 141
>2hsa_B 12-oxophytodienoate reductase 3; alpha beta 8 barrel, flavoprotein, jasmonate biosynthesis, oxidoreductase; HET: FMN; 1.50A {Solanum lycopersicum} PDB: 2hs6_A* 3hgs_A* 2hs8_A* 3hgo_A* 1q45_A* 2g5w_A* 2q3o_A*
Probab=21.70 E-value=2.7e+02 Score=30.33 Aligned_cols=26 Identities=19% Similarity=0.202 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHcCCcEEEEcC
Q 003819 609 YQIALAIKDEVEDLEKAGITVIQIDE 634 (793)
Q Consensus 609 ~~lA~al~~ev~~L~~aGv~~IQIDE 634 (793)
.++...+.+-.+.+.++|++.|+|.-
T Consensus 167 ~~ii~~f~~AA~~a~~AGfDgVEIh~ 192 (402)
T 2hsa_B 167 SQVVEDYRRSALNAIEAGFDGIEIHG 192 (402)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEECC
Confidence 44555666666777889999999996
No 142
>3noy_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; iron-sulfur protein, non-mevalonate pathway, terpene biosynt isoprenoid biosynthesis; 2.70A {Aquifex aeolicus}
Probab=21.66 E-value=6.3e+02 Score=27.13 Aligned_cols=126 Identities=16% Similarity=0.125 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHCCCCEEEeeccccccCCChHHHHHHHHHHHHHHhccCCCcEEEEeccCCCchhhHHHHhcCCCccEEEE
Q 003819 187 VYKEVVAELKAAGATWIQFDEPTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGVTGFGF 266 (793)
Q Consensus 187 ~Y~~~l~~L~~aG~~~VQiDEP~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~lp~Vd~l~l 266 (793)
+-.+.+++|.++||+.|-+-=| +.+..+++. .+.+.. .+.+..-.+|. + ..+-.-.+.. +|.+-+
T Consensus 47 atv~Qi~~l~~aG~diVRvavp------~~~~a~al~----~I~~~~-~vPlvaDiHf~-~--~lal~a~e~G-~dklRI 111 (366)
T 3noy_A 47 ATLNQIKRLYEAGCEIVRVAVP------HKEDVEALE----EIVKKS-PMPVIADIHFA-P--SYAFLSMEKG-VHGIRI 111 (366)
T ss_dssp HHHHHHHHHHHTTCCEEEEECC------SHHHHHHHH----HHHHHC-SSCEEEECCSC-H--HHHHHHHHTT-CSEEEE
T ss_pred HHHHHHHHHHHcCCCEEEeCCC------ChHHHHHHH----HHHhcC-CCCEEEeCCCC-H--HHHHHHHHhC-CCeEEE
Confidence 3445677899999999998533 223344444 333322 35666666665 2 2233344556 888776
Q ss_pred Eecc-C-CCChhhHhh-hCCCCCEEEEEEeeCCCCCC--------CCHHHHHH----HHHHHhhhcCCCcEEEeCCCC
Q 003819 267 DLIR-G-TKTLDLIKT-EFPLGKYLFAGVVDGRNIWA--------NDLASSLT----TLQDLAGTVGKDKVVVSTSCS 329 (793)
Q Consensus 267 D~~~-~-~~~l~~l~~-~~p~~k~l~lGvVdgrn~w~--------ed~~~i~~----~i~~~~~~v~~e~l~vspsCg 329 (793)
+=-+ + ...++.+.+ .-..++-+-+|| |+-+... .+++...+ .++. .+..+-+++.+|.-.|
T Consensus 112 NPGNig~~~~~~~vv~~ak~~~~piRIGv-N~GSL~~~ll~~yg~~~~eamVeSAl~~~~~-~e~~gf~~iviS~K~S 187 (366)
T 3noy_A 112 NPGNIGKEEIVREIVEEAKRRGVAVRIGV-NSGSLEKDLLEKYGYPSAEALAESALRWSEK-FEKWGFTNYKVSIKGS 187 (366)
T ss_dssp CHHHHSCHHHHHHHHHHHHHHTCEEEEEE-EGGGCCHHHHHHHSSCCHHHHHHHHHHHHHH-HHHTTCCCEEEEEECS
T ss_pred CCcccCchhHHHHHHHHHHHcCCCEEEec-CCcCCCHHHHHhcCCCCHHHHHHHHHHHHHH-HHhCCCCeEEEeeecC
Confidence 6322 1 112233332 112467799997 4444432 34444322 2222 2345668888876554
No 143
>2qgq_A Protein TM_1862; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: CXS; 2.00A {Thermotoga maritima MSB8}
Probab=21.59 E-value=6.5e+02 Score=25.61 Aligned_cols=163 Identities=15% Similarity=0.103 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHcCCcEEEE-cCcccccC--CCCCcccHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCC--chhHHHHH
Q 003819 614 AIKDEVEDLEKAGITVIQI-DEAALREG--LPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSN--FNDIIHSI 688 (793)
Q Consensus 614 al~~ev~~L~~aGv~~IQI-DEPal~~~--l~l~~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~C~g~--~~~i~~~l 688 (793)
.+.+|++.+.+.|++-|.+ +.-....+ +|. .. ...+.++.+.+ +++-..+.+.++.++ -.++++.|
T Consensus 37 ~i~~ei~~l~~~G~~ei~l~g~~~~~yG~~~~~-~~-------~l~~Ll~~l~~-~~gi~~ir~~~~~p~~l~~e~l~~l 107 (304)
T 2qgq_A 37 DITREVEDLLKEGKKEIILVAQDTTSYGIDLYR-KQ-------ALPDLLRRLNS-LNGEFWIRVMYLHPDHLTEEIISAM 107 (304)
T ss_dssp HHHHHHHHHHHTTCCEEEEECTTGGGTTHHHHS-SC-------CHHHHHHHHHT-SSSSCEEEECCCCGGGCCHHHHHHH
T ss_pred HHHHHHHHHHHCCCcEEEEEeEcccccCCCCCc-HH-------HHHHHHHHHHh-cCCCcEEEEeeeecccCCHHHHHHH
Confidence 4456677788889986654 32221111 110 01 12223333222 221123444333332 24688999
Q ss_pred HcCC--CcEEEEecCCCCh-------------hhH---HHhhhcccCCCeEeeeeecCCCCCCCCHHHHHHHHHHHHhhc
Q 003819 689 MDMD--ADVITIENSRSDE-------------KLL---SVFREGVKYRAGIGPGVYDIHSPRIPSTEEIADRINKMLAVL 750 (793)
Q Consensus 689 ~~l~--~D~isiE~~r~~~-------------~~L---~~~~~~~~~~~~i~~GVvD~~s~~ves~eev~~~i~~al~~i 750 (793)
.+.+ ++.+++-.-..+. +.+ +.+++ ...+-.+...++-+.. -++.+++.+.++-+.+ +
T Consensus 108 ~~~g~~~~~l~i~lqs~s~~vl~~m~r~~t~e~~~~~i~~l~~-~~~gi~i~~~~IvG~P--gEt~ed~~~t~~~l~~-l 183 (304)
T 2qgq_A 108 LELDKVVKYFDVPVQHGSDKILKLMGRTKSSEELKKMLSSIRE-RFPDAVLRTSIIVGFP--GETEEDFEELKQFVEE-I 183 (304)
T ss_dssp HHCTTBCCEEECCCBCSCHHHHHHTTCCSCHHHHHHHHHHHHH-HCTTCEEEEEEEECCT--TCCHHHHHHHHHHHHH-H
T ss_pred HhCCCCccEEEEecccCCHHHHHHhCCCCCHHHHHHHHHHHHh-hCCCCEEEEEEEEeCC--CCCHHHHHHHHHHHHH-c
Confidence 9988 7887764211111 112 22222 1011233333333221 2688888877776654 6
Q ss_pred CCCcEEEcC-----CCCCCC----CChhHHHHHHHHHHHHHHHHHHHH
Q 003819 751 ESNILWVNP-----DCGLKT----RKYSEVKPALSNMVAAAKLLRTQL 789 (793)
Q Consensus 751 ~~~~l~vsP-----dCGL~t----~~~~~~~~kL~~mv~aa~~~r~~~ 789 (793)
+++.+.+.| +..+.. .+.++..+.++.+.+..+.++.+.
T Consensus 184 ~~~~v~~~~~~p~pgT~~~~~~~~v~~~~~~~r~~~l~~~~~~~~~~~ 231 (304)
T 2qgq_A 184 QFDKLGAFVYSDEEGTVAFNLKEKVDPEMAKRRQEELLLLQAEISNSR 231 (304)
T ss_dssp CCSEEEEEECCC-----------CCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEeeCCCCChhHhCcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777664 233222 244455677777888777776654
No 144
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=21.58 E-value=1.8e+02 Score=29.58 Aligned_cols=73 Identities=22% Similarity=0.208 Sum_probs=42.7
Q ss_pred HHHHHHHHHHCCCCEEEeec------cccccCCChHHHHHHHHHHHHHHhccCCCcEEEEeccCCCchhhHHHHhcCCCc
Q 003819 188 YKEVVAELKAAGATWIQFDE------PTLVLDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADVPAETYKILTSLKGV 261 (793)
Q Consensus 188 Y~~~l~~L~~aG~~~VQiDE------P~L~~d~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~~~~~~~l~~lp~V 261 (793)
..++++.+.++|++|+++|= |.++. ....++.+++.+ ++..+-++.-..+. +..++.+.+.. +
T Consensus 42 L~~~i~~l~~~G~d~lHvDVmDg~FVpnit~--G~~~v~~lr~~~-------p~~~ldvHLmv~~p-~~~i~~~~~aG-A 110 (246)
T 3inp_A 42 LGDDVKAVLAAGADNIHFDVMDNHYVPNLTF--GPMVLKALRDYG-------ITAGMDVHLMVKPV-DALIESFAKAG-A 110 (246)
T ss_dssp HHHHHHHHHHTTCCCEEEEEEBSSSSSCBCC--CHHHHHHHHHHT-------CCSCEEEEEECSSC-HHHHHHHHHHT-C
T ss_pred HHHHHHHHHHcCCCEEEEEecCCCcCcchhc--CHHHHHHHHHhC-------CCCeEEEEEeeCCH-HHHHHHHHHcC-C
Confidence 34677888899999999983 22222 122344444332 12233333333444 55677888888 8
Q ss_pred cEEEEEeccC
Q 003819 262 TGFGFDLIRG 271 (793)
Q Consensus 262 d~l~lD~~~~ 271 (793)
|.+.+=....
T Consensus 111 d~itvH~Ea~ 120 (246)
T 3inp_A 111 TSIVFHPEAS 120 (246)
T ss_dssp SEEEECGGGC
T ss_pred CEEEEccccc
Confidence 9888865543
No 145
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1
Probab=21.07 E-value=1.8e+02 Score=28.37 Aligned_cols=70 Identities=14% Similarity=0.157 Sum_probs=41.5
Q ss_pred HHHHHHHHcCCcEEEEcCcccccCCCCCcccHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCchhHHHHHHcCCCcEE
Q 003819 617 DEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDADVI 696 (793)
Q Consensus 617 ~ev~~L~~aGv~~IQIDEPal~~~l~l~~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~C~g~~~~i~~~l~~l~~D~i 696 (793)
+.++.++++|++.|++.++.... + .... ..+.++.+.+... ..+..|....+..++ +.+.++++|.+
T Consensus 37 ~~a~~~~~~G~d~i~v~~~~~~~--~----~~~~----~~~~i~~i~~~~~--ipvi~~g~i~~~~~~-~~~~~~Gad~V 103 (253)
T 1h5y_A 37 EMAVRYEEEGADEIAILDITAAP--E----GRAT----FIDSVKRVAEAVS--IPVLVGGGVRSLEDA-TTLFRAGADKV 103 (253)
T ss_dssp HHHHHHHHTTCSCEEEEECCCCT--T----THHH----HHHHHHHHHHHCS--SCEEEESSCCSHHHH-HHHHHHTCSEE
T ss_pred HHHHHHHHcCCCEEEEEeCCccc--c----CCcc----cHHHHHHHHHhcC--CCEEEECCCCCHHHH-HHHHHcCCCEE
Confidence 44566788999999998764321 0 1111 1222333333222 347777665565554 66777899999
Q ss_pred EEe
Q 003819 697 TIE 699 (793)
Q Consensus 697 siE 699 (793)
.+-
T Consensus 104 ~i~ 106 (253)
T 1h5y_A 104 SVN 106 (253)
T ss_dssp EES
T ss_pred EEC
Confidence 986
No 146
>1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A*
Probab=21.04 E-value=3.2e+02 Score=26.88 Aligned_cols=84 Identities=17% Similarity=0.179 Sum_probs=45.9
Q ss_pred HHHHHHHcCCcEEEEcCcccccCCCCCcccHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCchhHHHHHHcCCCcEEE
Q 003819 618 EVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDADVIT 697 (793)
Q Consensus 618 ev~~L~~aGv~~IQIDEPal~~~l~l~~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~C~g~~~~i~~~l~~l~~D~is 697 (793)
-++.+.+.|+++||+.+-.. .. .+.++...+..+ +..+...+..- ++-++...+.++|.++
T Consensus 33 ~~~al~~gGv~~iel~~k~~---------~~-------~~~i~~l~~~~~-~~~vgagtvi~--~d~~~~A~~aGAd~v~ 93 (214)
T 1wbh_A 33 MAKALVAGGVRVLNVTLRTE---------CA-------VDAIRAIAKEVP-EAIVGAGTVLN--PQQLAEVTEAGAQFAI 93 (214)
T ss_dssp HHHHHHHTTCCEEEEESCST---------TH-------HHHHHHHHHHCT-TSEEEEESCCS--HHHHHHHHHHTCSCEE
T ss_pred HHHHHHHcCCCEEEEeCCCh---------hH-------HHHHHHHHHHCc-CCEEeeCEEEE--HHHHHHHHHcCCCEEE
Confidence 45667789999999996321 11 123333333333 23333333222 3667778888999988
Q ss_pred EecCCCChhhHHHhhhcccCCCeEeeee
Q 003819 698 IENSRSDEKLLSVFREGVKYRAGIGPGV 725 (793)
Q Consensus 698 iE~~r~~~~~L~~~~~~~~~~~~i~~GV 725 (793)
.-. .+.+..+.-+. ++..+.+|+
T Consensus 94 ~p~--~d~~v~~~~~~---~g~~~i~G~ 116 (214)
T 1wbh_A 94 SPG--LTEPLLKAATE---GTIPLIPGI 116 (214)
T ss_dssp ESS--CCHHHHHHHHH---SSSCEEEEE
T ss_pred cCC--CCHHHHHHHHH---hCCCEEEec
Confidence 652 34444444333 334556673
No 147
>2qiw_A PEP phosphonomutase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: P6G; 1.80A {Corynebacterium glutamicum atcc 13032}
Probab=20.95 E-value=6.6e+02 Score=25.39 Aligned_cols=142 Identities=13% Similarity=0.081 Sum_probs=76.8
Q ss_pred HHHHHHHHcCCcEEEEcCcccccCCCCCcccHHHHHHHHHHHHHHHhc--CCCCCCeEEEEeCC---C------CchhHH
Q 003819 617 DEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNC--GVQDTTQVHTHMCY---S------NFNDII 685 (793)
Q Consensus 617 ~ev~~L~~aGv~~IQIDEPal~~~l~l~~~~~~~~l~~av~a~~~~~~--~v~~~~~I~lH~C~---g------~~~~i~ 685 (793)
+-++.+.++|+.-|+|.+-.-..+-.+. +.+++.+. +.+...+.. +++ ..|.=|+-- | ..++.+
T Consensus 97 ~~~~~l~~aGa~gv~iEd~~~~~~k~l~--~~~e~~~~-I~a~~~a~~~~g~~--~~v~aRtd~~~~g~~~~~~~~~~ai 171 (255)
T 2qiw_A 97 DLIAQILEAGAVGINVEDVVHSEGKRVR--EAQEHADY-IAAARQAADVAGVD--VVINGRTDAVKLGADVFEDPMVEAI 171 (255)
T ss_dssp HHHHHHHHTTCCEEEECSEEGGGTTEEC--CHHHHHHH-HHHHHHHHHHHTCC--CEEEEEECHHHHCTTTSSSHHHHHH
T ss_pred HHHHHHHHcCCcEEEECCCCCCCCCccc--CHHHHHHH-HHHHHHHHHhcCCC--eEEEEEechhhccCCcchHHHHHHH
Confidence 4456677899999999885422111111 12222222 222222222 443 456666541 1 144555
Q ss_pred H---HHHcCCCcEEEEecCCCChhhHHHhhhcccCCCeEeeeeecCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEcCCCC
Q 003819 686 H---SIMDMDADVITIENSRSDEKLLSVFREGVKYRAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLESNILWVNPDCG 762 (793)
Q Consensus 686 ~---~l~~l~~D~isiE~~r~~~~~L~~~~~~~~~~~~i~~GVvD~~s~~ves~eev~~~i~~al~~i~~~~l~vsPdCG 762 (793)
+ .+.+.++|.|.+|... +.+..+.|.+....|..+. +.-..++| ..+++++ ..+|..++...+.
T Consensus 172 ~ra~a~~eAGAd~i~~e~~~-~~~~~~~i~~~~~~P~n~~-~~~~~~~p-~~~~~eL--------~~lGv~~v~~~~~-- 238 (255)
T 2qiw_A 172 KRIKLMEQAGARSVYPVGLS-TAEQVERLVDAVSVPVNIT-AHPVDGHG-AGDLATL--------AGLGVRRVTFGPL-- 238 (255)
T ss_dssp HHHHHHHHHTCSEEEECCCC-SHHHHHHHHTTCSSCBEEE-CBTTTBBT-TBCHHHH--------HHTTCCEEECTTH--
T ss_pred HHHHHHHHcCCcEEEEcCCC-CHHHHHHHHHhCCCCEEEE-ecCCCCCC-CCCHHHH--------HHcCCCEEEEHHH--
Confidence 4 3457999999999754 3455666655344444322 11111222 3566664 5578787766544
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHH
Q 003819 763 LKTRKYSEVKPALSNMVAAAKLLRT 787 (793)
Q Consensus 763 L~t~~~~~~~~kL~~mv~aa~~~r~ 787 (793)
.++.|.++++.+++
T Consensus 239 -----------a~~a~~~~~~~i~~ 252 (255)
T 2qiw_A 239 -----------WQKWLAATSAQQLK 252 (255)
T ss_dssp -----------HHHHHHHHHHHHHG
T ss_pred -----------HHHHHHHHHHHHHh
Confidence 67777777777765
No 148
>1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5
Probab=20.88 E-value=7.4e+02 Score=25.95 Aligned_cols=142 Identities=11% Similarity=0.146 Sum_probs=82.1
Q ss_pred HHHHHHHHcCCcEEEEc--------CcccccCCCCCcccHHHHHHHHHHHHHHHhcCCCCCCeEEEEe--CCCCchhHHH
Q 003819 617 DEVEDLEKAGITVIQID--------EAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHM--CYSNFNDIIH 686 (793)
Q Consensus 617 ~ev~~L~~aGv~~IQID--------EPal~~~l~l~~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~--C~g~~~~i~~ 686 (793)
+.++.|.++|+++|.+= .|..+ . ....++ + .++.+.+.++ .+.+.+.+ +++. .+-++
T Consensus 34 ~i~~~L~~~Gvd~IEvG~~~g~p~ssp~~g--~-~~~~~~-e-------~l~~i~~~~~-~~~i~~l~~p~~~~-~~~i~ 100 (345)
T 1nvm_A 34 AIARALDKAKVDSIEVAHGDGLQGSSFNYG--F-GRHTDL-E-------YIEAVAGEIS-HAQIATLLLPGIGS-VHDLK 100 (345)
T ss_dssp HHHHHHHHHTCSEEECSCTTSTTCCBTTTB--C-CSSCHH-H-------HHHHHHTTCS-SSEEEEEECBTTBC-HHHHH
T ss_pred HHHHHHHHcCCCEEEEecCCCCCCCCCccc--C-CCCCHH-H-------HHHHHHhhCC-CCEEEEEecCCccc-HHHHH
Confidence 34566777899999993 23321 1 111112 1 2333334443 45565543 3444 34567
Q ss_pred HHHcCCCcEEEEecCCCChhhH----HHhhhcccCCCeEeeeeecCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEcCCCC
Q 003819 687 SIMDMDADVITIENSRSDEKLL----SVFREGVKYRAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLESNILWVNPDCG 762 (793)
Q Consensus 687 ~l~~l~~D~isiE~~r~~~~~L----~~~~~~~~~~~~i~~GVvD~~s~~ves~eev~~~i~~al~~i~~~~l~vsPdCG 762 (793)
...+.++|.+.+-.+.++.+.. +..++ .+..+...+-|.. .-+++.+.+.++.+.+. |+..+.+.-.-|
T Consensus 101 ~a~~aGvd~v~I~~~~s~~~~~~~~i~~ak~---~G~~v~~~~~~a~---~~~~e~~~~ia~~~~~~-Ga~~i~l~DT~G 173 (345)
T 1nvm_A 101 NAYQAGARVVRVATHCTEADVSKQHIEYARN---LGMDTVGFLMMSH---MIPAEKLAEQGKLMESY-GATCIYMADSGG 173 (345)
T ss_dssp HHHHHTCCEEEEEEETTCGGGGHHHHHHHHH---HTCEEEEEEESTT---SSCHHHHHHHHHHHHHH-TCSEEEEECTTC
T ss_pred HHHhCCcCEEEEEEeccHHHHHHHHHHHHHH---CCCEEEEEEEeCC---CCCHHHHHHHHHHHHHC-CCCEEEECCCcC
Confidence 7778899999887544432222 33333 2456666666653 34678888877777664 778888877777
Q ss_pred CCCCChhHHHHHHHHHHH
Q 003819 763 LKTRKYSEVKPALSNMVA 780 (793)
Q Consensus 763 L~t~~~~~~~~kL~~mv~ 780 (793)
.. ++.++..-++.+.+
T Consensus 174 ~~--~P~~v~~lv~~l~~ 189 (345)
T 1nvm_A 174 AM--SMNDIRDRMRAFKA 189 (345)
T ss_dssp CC--CHHHHHHHHHHHHH
T ss_pred cc--CHHHHHHHHHHHHH
Confidence 76 46666555555543
No 149
>3ewb_X 2-isopropylmalate synthase; LEUA, structural genomics, unknown function, amino-acid biosynthesis; 2.10A {Listeria monocytogenes str}
Probab=20.54 E-value=7e+02 Score=25.57 Aligned_cols=142 Identities=13% Similarity=0.164 Sum_probs=78.8
Q ss_pred HHHHHHHHcCCcEEEEcCcccccCCCCCcccHHHHHHHHHHHHHHHhcCCCCCCeEEEEe-CC-CCchhHHHHHHcCCCc
Q 003819 617 DEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHM-CY-SNFNDIIHSIMDMDAD 694 (793)
Q Consensus 617 ~ev~~L~~aGv~~IQIDEPal~~~l~l~~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~-C~-g~~~~i~~~l~~l~~D 694 (793)
+.++.|.++|++.|.+=-|+..+ .+++ .+..+.. .++ .+++.... |. .+++..++.+...+++
T Consensus 31 ~i~~~L~~~Gv~~IE~g~p~~~~------~d~e-----~v~~i~~---~~~-~~~i~~l~~~~~~di~~a~~~~~~ag~~ 95 (293)
T 3ewb_X 31 QIALQLEKLGIDVIEAGFPISSP------GDFE-----CVKAIAK---AIK-HCSVTGLARCVEGDIDRAEEALKDAVSP 95 (293)
T ss_dssp HHHHHHHHHTCSEEEEECGGGCH------HHHH-----HHHHHHH---HCC-SSEEEEEEESSHHHHHHHHHHHTTCSSE
T ss_pred HHHHHHHHcCCCEEEEeCCCCCc------cHHH-----HHHHHHH---hcC-CCEEEEEecCCHHHHHHHHHHHhhcCCC
Confidence 34566888999999987666421 1121 1222222 222 34444433 21 1234455555567889
Q ss_pred EEEEecCCCCh-----------hhHHHhhhc----ccCCCeEeeeeecCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEcC
Q 003819 695 VITIENSRSDE-----------KLLSVFREG----VKYRAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLESNILWVNP 759 (793)
Q Consensus 695 ~isiE~~r~~~-----------~~L~~~~~~----~~~~~~i~~GVvD~~s~~ves~eev~~~i~~al~~i~~~~l~vsP 759 (793)
.+.+=.+.|+. +.|+.+.+. ...+..+..+.-|.. .-+++.+.+.++++.+ .|++.+.+.-
T Consensus 96 ~v~i~~~~Sd~~~~~nl~~s~~e~l~~~~~~v~~a~~~g~~v~~~~~d~~---~~~~~~~~~~~~~~~~-~G~~~i~l~D 171 (293)
T 3ewb_X 96 QIHIFLATSDVHMEYKLKMSRAEVLASIKHHISYARQKFDVVQFSPEDAT---RSDRAFLIEAVQTAID-AGATVINIPD 171 (293)
T ss_dssp EEEEEEECSHHHHHHTTCCCHHHHHHHHHHHHHHHHTTCSCEEEEEETGG---GSCHHHHHHHHHHHHH-TTCCEEEEEC
T ss_pred EEEEEecCcHHHHHHHhCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccCC---CCCHHHHHHHHHHHHH-cCCCEEEecC
Confidence 88876444321 222222211 123445667776642 3477888888877765 5888888887
Q ss_pred CCCCCCCChhHHHHHHHHHH
Q 003819 760 DCGLKTRKYSEVKPALSNMV 779 (793)
Q Consensus 760 dCGL~t~~~~~~~~kL~~mv 779 (793)
.-|.. +|.++..-++.+.
T Consensus 172 T~G~~--~P~~v~~lv~~l~ 189 (293)
T 3ewb_X 172 TVGYT--NPTEFGQLFQDLR 189 (293)
T ss_dssp SSSCC--CHHHHHHHHHHHH
T ss_pred CCCCC--CHHHHHHHHHHHH
Confidence 77774 6666555554443
No 150
>3noy_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; iron-sulfur protein, non-mevalonate pathway, terpene biosynt isoprenoid biosynthesis; 2.70A {Aquifex aeolicus}
Probab=20.10 E-value=3.9e+02 Score=28.79 Aligned_cols=123 Identities=14% Similarity=0.136 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHcCCcEEEEcCcccccCCCCCcccHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCchhHHHHHHcCCC
Q 003819 614 AIKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQDFYLKWAVHSFRITNCGVQDTTQVHTHMCYSNFNDIIHSIMDMDA 693 (793)
Q Consensus 614 al~~ev~~L~~aGv~~IQIDEPal~~~l~l~~~~~~~~l~~av~a~~~~~~~v~~~~~I~lH~C~g~~~~i~~~l~~l~~ 693 (793)
+..+.+.+|+++||++|-+-=|... +.+++..+.+..+ +.+..-+=| |+...+ .-.+.++
T Consensus 47 atv~Qi~~l~~aG~diVRvavp~~~----------------~a~al~~I~~~~~--vPlvaDiHf-~~~lal-~a~e~G~ 106 (366)
T 3noy_A 47 ATLNQIKRLYEAGCEIVRVAVPHKE----------------DVEALEEIVKKSP--MPVIADIHF-APSYAF-LSMEKGV 106 (366)
T ss_dssp HHHHHHHHHHHTTCCEEEEECCSHH----------------HHHHHHHHHHHCS--SCEEEECCS-CHHHHH-HHHHTTC
T ss_pred HHHHHHHHHHHcCCCEEEeCCCChH----------------HHHHHHHHHhcCC--CCEEEeCCC-CHHHHH-HHHHhCC
Confidence 4455678899999999998654311 1234444333333 334444322 333333 3466789
Q ss_pred cEEEEecCC--CCh---hhHHHhhhcccCCCeEeeeeecCCCC------C-CCCHHHHHHHHHHH---HhhcCCCcEEEc
Q 003819 694 DVITIENSR--SDE---KLLSVFREGVKYRAGIGPGVYDIHSP------R-IPSTEEIADRINKM---LAVLESNILWVN 758 (793)
Q Consensus 694 D~isiE~~r--~~~---~~L~~~~~~~~~~~~i~~GVvD~~s~------~-ves~eev~~~i~~a---l~~i~~~~l~vs 758 (793)
|.+.|.-.+ ++. +.++..++ ++..|-+||=.+.=+ + -+++|.+++...+. ++.++-+++.+|
T Consensus 107 dklRINPGNig~~~~~~~vv~~ak~---~~~piRIGvN~GSL~~~ll~~yg~~~~eamVeSAl~~~~~~e~~gf~~iviS 183 (366)
T 3noy_A 107 HGIRINPGNIGKEEIVREIVEEAKR---RGVAVRIGVNSGSLEKDLLEKYGYPSAEALAESALRWSEKFEKWGFTNYKVS 183 (366)
T ss_dssp SEEEECHHHHSCHHHHHHHHHHHHH---HTCEEEEEEEGGGCCHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred CeEEECCcccCchhHHHHHHHHHHH---cCCCEEEecCCcCCCHHHHHhcCCCCHHHHHHHHHHHHHHHHhCCCCeEEEe
Confidence 999998321 111 22333343 456677776433211 1 15777665554333 344677888886
Q ss_pred C
Q 003819 759 P 759 (793)
Q Consensus 759 P 759 (793)
.
T Consensus 184 ~ 184 (366)
T 3noy_A 184 I 184 (366)
T ss_dssp E
T ss_pred e
Confidence 4
No 151
>4ab4_A Xenobiotic reductase B; oxidoreductase, OLD yellow enzyme; HET: FMN TNL EDO; 1.50A {Pseudomonas putida KT2440}
Probab=20.04 E-value=8e+02 Score=26.06 Aligned_cols=124 Identities=14% Similarity=0.124 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHHHHcCCcEEEEcCcc-------cccCCCCCc----ccHH---HHHHHHHHHHHHHhcCCCCCCeEEE
Q 003819 609 YQIALAIKDEVEDLEKAGITVIQIDEAA-------LREGLPLRK----SEQD---FYLKWAVHSFRITNCGVQDTTQVHT 674 (793)
Q Consensus 609 ~~lA~al~~ev~~L~~aGv~~IQIDEPa-------l~~~l~l~~----~~~~---~~l~~av~a~~~~~~~v~~~~~I~l 674 (793)
.++...+.+-.+...++|.+.|+|.--- |......+. .+.. .++-..+++.+.++ +++ .|.+
T Consensus 149 ~~ii~~f~~AA~~a~~aGfDgVEih~a~GYLl~QFLSp~~N~RtD~yGGslenR~rf~~eiv~aVr~~v---g~~-~v~v 224 (362)
T 4ab4_A 149 NDIVEAYRSGAENAKAAGFDGVEIHGANGYLLDQFLQSSTNQRTDRYGGSLENRARLLLEVTDAAIEVW---GAQ-RVGV 224 (362)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEEEECCTTSHHHHHHSTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHH---CGG-GEEE
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEECCcCccHHHhhcCCccccccCCCCCchhhHHHHHHHHHHHHHHhc---CCC-ceEE
Confidence 4566667777777888999999999642 111111111 1122 33444555555554 222 3444
Q ss_pred EeCCCC-------------chhHHHHHHcCCCcEEEEecCCCChhhHHHhhhcccCCCeEeeeeecCCCCCCCCHHHHHH
Q 003819 675 HMCYSN-------------FNDIIHSIMDMDADVITIENSRSDEKLLSVFREGVKYRAGIGPGVYDIHSPRIPSTEEIAD 741 (793)
Q Consensus 675 H~C~g~-------------~~~i~~~l~~l~~D~isiE~~r~~~~~L~~~~~~~~~~~~i~~GVvD~~s~~ves~eev~~ 741 (793)
-+.-.+ +..+...+.+.++|.|++-....+.+..+.+++.... -.++.|- + ++++..+
T Consensus 225 Rls~~~~~~g~~~~~~~~~~~~la~~l~~~Gvd~i~v~~~~~~~~~~~~ik~~~~i-Pvi~~Gg-------i-t~e~a~~ 295 (362)
T 4ab4_A 225 HLAPRADAHDMGDADRAETFTYVARELGKRGIAFICSREREADDSIGPLIKEAFGG-PYIVNER-------F-DKASANA 295 (362)
T ss_dssp EECTTCCSSSCCCTTHHHHHHHHHHHHHHTTCSEEEEECCCCTTCCHHHHHHHHCS-CEEEESS-------C-CHHHHHH
T ss_pred EeeccccccccCCCCcHHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHCCC-CEEEeCC-------C-CHHHHHH
Confidence 443211 2345677788999999986432222344555542222 2344443 3 4566555
Q ss_pred HHHH
Q 003819 742 RINK 745 (793)
Q Consensus 742 ~i~~ 745 (793)
.|+.
T Consensus 296 ~l~~ 299 (362)
T 4ab4_A 296 ALAS 299 (362)
T ss_dssp HHHT
T ss_pred HHHc
Confidence 4443
Done!