Query 003820
Match_columns 793
No_of_seqs 402 out of 2101
Neff 7.3
Searched_HMMs 46136
Date Thu Mar 28 12:38:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003820.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003820hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5022 Myosin heavy chain [Cy 100.0 2E-132 3E-137 1173.0 53.1 542 2-560 279-834 (1463)
2 PTZ00014 myosin-A; Provisional 100.0 2E-126 3E-131 1127.3 44.0 494 2-510 308-816 (821)
3 cd01383 MYSc_type_VIII Myosin 100.0 4E-121 8E-126 1069.5 45.5 464 2-467 214-677 (677)
4 KOG0164 Myosin class I heavy c 100.0 1E-117 3E-122 973.3 39.0 537 2-565 223-789 (1001)
5 cd01381 MYSc_type_VII Myosin m 100.0 6E-117 1E-121 1034.4 44.7 454 2-467 209-671 (671)
6 cd01380 MYSc_type_V Myosin mot 100.0 9E-117 2E-121 1037.7 45.7 465 2-467 215-691 (691)
7 cd01384 MYSc_type_XI Myosin mo 100.0 1E-116 2E-121 1031.7 43.6 453 2-470 214-673 (674)
8 KOG0160 Myosin class V heavy c 100.0 5E-116 1E-120 1014.9 46.5 538 2-560 218-758 (862)
9 cd01378 MYSc_type_I Myosin mot 100.0 2E-116 4E-121 1032.5 43.7 451 2-467 212-674 (674)
10 cd01377 MYSc_type_II Myosin mo 100.0 6E-116 1E-120 1030.9 46.0 460 3-467 226-693 (693)
11 cd01387 MYSc_type_XV Myosin mo 100.0 1E-115 2E-120 1025.1 45.4 462 2-467 210-677 (677)
12 cd01385 MYSc_type_IX Myosin mo 100.0 1E-114 2E-119 1018.8 44.8 460 2-467 220-688 (692)
13 cd01382 MYSc_type_VI Myosin mo 100.0 1E-114 3E-119 1021.3 43.4 456 2-467 214-716 (717)
14 smart00242 MYSc Myosin. Large 100.0 9E-113 2E-117 1006.0 43.6 453 2-468 218-677 (677)
15 KOG0162 Myosin class I heavy c 100.0 1E-113 2E-118 941.9 31.0 494 1-514 229-736 (1106)
16 cd01379 MYSc_type_III Myosin m 100.0 1E-111 2E-116 986.5 43.3 429 2-467 211-653 (653)
17 cd00124 MYSc Myosin motor doma 100.0 1E-111 3E-116 998.3 44.2 463 2-467 210-679 (679)
18 KOG0161 Myosin class II heavy 100.0 1E-110 3E-115 1032.6 48.9 507 2-535 299-814 (1930)
19 cd01386 MYSc_type_XVIII Myosin 100.0 6E-108 1E-112 966.6 43.8 451 14-467 224-767 (767)
20 PF00063 Myosin_head: Myosin h 100.0 3E-107 6E-112 971.6 42.4 455 2-456 213-689 (689)
21 KOG0163 Myosin class VI heavy 100.0 8E-103 2E-107 856.6 51.9 521 2-543 267-836 (1259)
22 KOG4229 Myosin VII, myosin IXB 100.0 4.2E-66 9.2E-71 613.1 15.8 554 3-563 273-1009(1062)
23 KOG0160 Myosin class V heavy c 98.1 4.8E-05 1E-09 91.0 16.1 73 492-568 671-743 (862)
24 KOG0161 Myosin class II heavy 98.1 0.0007 1.5E-08 87.5 25.9 514 77-653 324-922 (1930)
25 KOG0520 Uncharacterized conser 97.8 1.4E-05 3.1E-10 95.4 5.2 97 471-567 810-938 (975)
26 PF00612 IQ: IQ calmodulin-bin 97.2 0.00042 9E-09 44.0 3.3 19 521-539 2-20 (21)
27 KOG2128 Ras GTPase-activating 97.1 0.0027 5.9E-08 78.4 11.1 91 475-567 539-646 (1401)
28 COG5022 Myosin heavy chain [Cy 96.8 0.04 8.6E-07 69.0 18.2 99 471-570 793-892 (1463)
29 PF00612 IQ: IQ calmodulin-bin 96.8 0.0015 3.2E-08 41.5 3.0 21 543-563 1-21 (21)
30 KOG0164 Myosin class I heavy c 96.7 0.0029 6.4E-08 72.9 6.4 60 494-564 696-755 (1001)
31 KOG0520 Uncharacterized conser 96.1 0.0097 2.1E-07 72.0 6.5 50 519-568 809-858 (975)
32 PTZ00014 myosin-A; Provisional 95.9 0.015 3.3E-07 71.1 7.6 41 521-561 778-818 (821)
33 smart00015 IQ Short calmodulin 95.7 0.012 2.5E-07 39.5 3.0 19 521-539 4-22 (26)
34 smart00015 IQ Short calmodulin 95.5 0.0088 1.9E-07 40.1 2.0 20 494-513 3-22 (26)
35 KOG2128 Ras GTPase-activating 94.9 0.31 6.8E-06 61.0 14.0 92 476-567 512-616 (1401)
36 KOG4229 Myosin VII, myosin IXB 93.9 0.038 8.2E-07 68.6 3.2 170 338-509 642-817 (1062)
37 KOG0163 Myosin class VI heavy 89.7 35 0.00076 40.9 20.0 28 27-56 371-398 (1259)
38 PF15290 Syntaphilin: Golgi-lo 89.2 4.7 0.0001 42.5 11.6 40 588-627 70-109 (305)
39 PRK13729 conjugal transfer pil 87.7 5.6 0.00012 45.5 12.0 59 595-657 71-129 (475)
40 PF09755 DUF2046: Uncharacteri 82.4 74 0.0016 34.6 16.8 58 600-657 142-203 (310)
41 KOG3684 Ca2+-activated K+ chan 82.2 55 0.0012 37.3 16.2 39 501-540 346-384 (489)
42 COG3883 Uncharacterized protei 78.5 21 0.00045 37.9 11.0 60 586-645 52-111 (265)
43 TIGR02449 conserved hypothetic 78.3 29 0.00064 28.8 9.5 55 589-643 3-57 (65)
44 PF06005 DUF904: Protein of un 78.1 42 0.0009 28.5 11.5 40 590-629 8-47 (72)
45 PF06005 DUF904: Protein of un 76.8 40 0.00087 28.6 10.2 52 586-637 18-69 (72)
46 KOG0804 Cytoplasmic Zn-finger 76.5 35 0.00076 38.6 12.4 73 583-655 379-451 (493)
47 PF10205 KLRAQ: Predicted coil 75.6 41 0.0009 30.5 10.4 55 583-637 16-70 (102)
48 PRK11637 AmiB activator; Provi 75.1 29 0.00064 39.7 12.2 17 615-631 97-113 (428)
49 KOG0942 E3 ubiquitin protein l 73.9 4.1 8.9E-05 49.4 4.8 40 505-544 14-53 (1001)
50 COG4026 Uncharacterized protei 72.3 64 0.0014 33.1 12.0 36 596-631 152-187 (290)
51 COG4026 Uncharacterized protei 71.0 42 0.00092 34.4 10.4 10 444-453 33-42 (290)
52 PF12718 Tropomyosin_1: Tropom 70.5 51 0.0011 31.8 10.8 63 590-652 77-142 (143)
53 KOG0977 Nuclear envelope prote 70.0 2.3E+02 0.0051 33.4 17.8 76 582-657 116-194 (546)
54 PF10211 Ax_dynein_light: Axon 70.0 1.3E+02 0.0028 30.5 15.7 33 523-555 74-106 (189)
55 TIGR02894 DNA_bind_RsfA transc 69.9 1E+02 0.0022 30.4 12.4 53 597-653 101-153 (161)
56 KOG0971 Microtubule-associated 69.8 1.8E+02 0.0039 36.0 16.7 73 583-655 973-1049(1243)
57 KOG4005 Transcription factor X 69.5 47 0.001 34.4 10.4 30 594-623 91-120 (292)
58 PRK10884 SH3 domain-containing 69.0 33 0.00071 35.3 9.6 53 588-640 120-172 (206)
59 PRK09039 hypothetical protein; 68.6 2E+02 0.0043 32.1 16.4 140 581-726 125-267 (343)
60 PRK09039 hypothetical protein; 68.1 56 0.0012 36.4 12.0 39 595-633 146-184 (343)
61 PF00038 Filament: Intermediat 68.1 66 0.0014 35.0 12.5 18 340-357 48-65 (312)
62 PF04849 HAP1_N: HAP1 N-termin 67.9 65 0.0014 35.1 11.8 70 576-645 224-293 (306)
63 PRK11637 AmiB activator; Provi 67.1 57 0.0012 37.4 12.2 50 587-636 62-111 (428)
64 PRK10884 SH3 domain-containing 66.3 68 0.0015 33.0 11.2 14 445-458 26-39 (206)
65 KOG4427 E3 ubiquitin protein l 66.1 75 0.0016 38.3 12.5 35 517-557 27-61 (1096)
66 KOG4427 E3 ubiquitin protein l 64.9 12 0.00025 44.7 5.8 39 476-514 12-50 (1096)
67 PF08826 DMPK_coil: DMPK coile 64.8 51 0.0011 27.1 7.9 36 602-637 20-55 (61)
68 COG4942 Membrane-bound metallo 64.8 77 0.0017 36.0 12.0 73 582-654 55-127 (420)
69 PF06785 UPF0242: Uncharacteri 64.4 1.8E+02 0.0039 31.8 14.0 17 520-536 67-83 (401)
70 KOG0971 Microtubule-associated 64.0 42 0.00091 41.1 10.2 19 618-636 452-470 (1243)
71 PF12325 TMF_TATA_bd: TATA ele 63.7 1.3E+02 0.0028 28.2 12.0 17 616-632 70-86 (120)
72 COG2433 Uncharacterized conser 63.6 73 0.0016 37.6 11.8 33 735-770 609-642 (652)
73 KOG0942 E3 ubiquitin protein l 63.5 84 0.0018 38.8 12.6 35 532-566 18-52 (1001)
74 PF08614 ATG16: Autophagy prot 63.4 1.4E+02 0.0029 30.4 12.8 57 581-637 118-174 (194)
75 PF12718 Tropomyosin_1: Tropom 63.2 1.1E+02 0.0025 29.4 11.6 13 702-714 106-118 (143)
76 PF04111 APG6: Autophagy prote 62.6 96 0.0021 34.1 12.3 45 583-627 47-91 (314)
77 COG3883 Uncharacterized protei 62.5 1.1E+02 0.0025 32.6 12.1 64 588-651 47-110 (265)
78 KOG0995 Centromere-associated 62.4 2.3E+02 0.0051 33.3 15.5 105 535-648 264-380 (581)
79 COG1579 Zn-ribbon protein, pos 62.2 87 0.0019 33.0 11.2 46 591-636 94-139 (239)
80 PF06785 UPF0242: Uncharacteri 61.3 2.6E+02 0.0055 30.8 16.2 40 588-627 143-182 (401)
81 PF11932 DUF3450: Protein of u 60.8 1.3E+02 0.0028 31.8 12.6 51 587-637 64-114 (251)
82 PF06156 DUF972: Protein of un 59.1 38 0.00083 31.1 7.0 37 586-622 15-51 (107)
83 KOG0377 Protein serine/threoni 59.1 12 0.00026 42.0 4.4 31 521-552 18-48 (631)
84 PRK13729 conjugal transfer pil 58.8 42 0.00092 38.6 8.8 55 583-637 66-120 (475)
85 PF08317 Spc7: Spc7 kinetochor 58.7 2.9E+02 0.0062 30.5 16.2 120 530-653 142-265 (325)
86 COG1579 Zn-ribbon protein, pos 58.7 2.4E+02 0.0053 29.7 15.6 68 583-650 100-167 (239)
87 KOG4005 Transcription factor X 57.6 67 0.0015 33.3 9.0 50 588-637 92-141 (292)
88 PF10473 CENP-F_leu_zip: Leuci 57.4 1.9E+02 0.0041 28.0 12.1 78 578-655 51-128 (140)
89 PF10211 Ax_dynein_light: Axon 57.4 2.2E+02 0.0048 28.8 14.4 23 546-568 74-96 (189)
90 KOG2129 Uncharacterized conser 56.9 1.5E+02 0.0032 33.4 12.1 58 598-655 163-224 (552)
91 PF13851 GAS: Growth-arrest sp 56.7 1.1E+02 0.0024 31.2 10.9 51 587-637 87-137 (201)
92 PF13851 GAS: Growth-arrest sp 56.5 1.5E+02 0.0033 30.3 11.7 26 598-623 60-85 (201)
93 PF09726 Macoilin: Transmembra 56.1 4.2E+02 0.0091 32.6 17.2 31 589-619 548-578 (697)
94 PF04859 DUF641: Plant protein 56.0 37 0.00081 32.3 6.6 52 578-629 79-130 (131)
95 PF12325 TMF_TATA_bd: TATA ele 55.9 1.8E+02 0.0039 27.3 12.2 49 594-642 69-117 (120)
96 PF15294 Leu_zip: Leucine zipp 55.1 1.4E+02 0.003 32.1 11.4 77 580-656 133-225 (278)
97 PF08826 DMPK_coil: DMPK coile 54.7 1.2E+02 0.0026 24.9 9.8 37 590-626 22-58 (61)
98 PF06637 PV-1: PV-1 protein (P 53.6 1.3E+02 0.0029 33.4 11.1 23 637-659 361-383 (442)
99 TIGR03752 conj_TIGR03752 integ 53.1 92 0.002 35.9 10.3 38 579-616 59-96 (472)
100 PF11559 ADIP: Afadin- and alp 52.9 2.2E+02 0.0048 27.4 15.5 55 584-638 64-118 (151)
101 PF08172 CASP_C: CASP C termin 52.7 61 0.0013 34.3 8.4 51 580-630 80-130 (248)
102 PRK13169 DNA replication intia 52.0 61 0.0013 29.9 7.1 39 585-623 14-52 (110)
103 PF06632 XRCC4: DNA double-str 51.7 1.3E+02 0.0028 33.5 11.0 59 595-653 146-208 (342)
104 PF09744 Jnk-SapK_ap_N: JNK_SA 51.4 1.7E+02 0.0036 28.9 10.6 56 595-650 45-100 (158)
105 PF10168 Nup88: Nuclear pore c 51.2 2.4E+02 0.0053 34.7 14.2 35 623-657 630-664 (717)
106 PF03962 Mnd1: Mnd1 family; I 50.6 1.1E+02 0.0023 31.1 9.5 23 597-619 73-95 (188)
107 COG3074 Uncharacterized protei 50.6 1.5E+02 0.0033 24.8 10.5 44 602-645 27-73 (79)
108 PF00170 bZIP_1: bZIP transcri 50.5 1.2E+02 0.0027 24.6 8.2 29 596-624 29-57 (64)
109 PF10805 DUF2730: Protein of u 50.3 1.8E+02 0.0039 26.5 10.0 48 587-634 43-92 (106)
110 PF00769 ERM: Ezrin/radixin/mo 49.3 1.6E+02 0.0034 31.2 10.9 67 589-655 50-126 (246)
111 PF09304 Cortex-I_coil: Cortex 49.1 1.9E+02 0.0041 26.5 9.6 37 596-632 40-76 (107)
112 COG2433 Uncharacterized conser 49.1 1.5E+02 0.0032 35.1 11.2 15 698-712 575-589 (652)
113 KOG0804 Cytoplasmic Zn-finger 48.9 4.3E+02 0.0093 30.3 14.2 12 152-163 74-85 (493)
114 PF13094 CENP-Q: CENP-Q, a CEN 48.3 1.5E+02 0.0033 28.9 10.0 55 589-643 30-84 (160)
115 KOG0162 Myosin class I heavy c 48.0 19 0.0004 43.0 3.9 28 522-549 698-725 (1106)
116 PF04102 SlyX: SlyX; InterPro 46.6 1.1E+02 0.0024 25.6 7.4 40 594-633 5-44 (69)
117 PRK15422 septal ring assembly 46.3 2E+02 0.0042 24.9 9.3 29 602-630 27-55 (79)
118 PF04201 TPD52: Tumour protein 46.1 1.1E+02 0.0025 30.0 8.3 52 596-647 32-88 (162)
119 PF05266 DUF724: Protein of un 44.8 3.5E+02 0.0076 27.5 12.3 13 642-654 169-181 (190)
120 KOG4571 Activating transcripti 44.5 1.1E+02 0.0024 32.9 8.6 36 596-631 251-286 (294)
121 TIGR03752 conj_TIGR03752 integ 44.3 2.2E+02 0.0048 32.9 11.5 46 586-631 59-104 (472)
122 TIGR03185 DNA_S_dndD DNA sulfu 44.2 1.9E+02 0.0041 35.1 12.0 7 526-532 171-177 (650)
123 KOG2391 Vacuolar sorting prote 44.1 1.4E+02 0.0029 32.9 9.3 15 350-364 130-144 (365)
124 PF00038 Filament: Intermediat 44.1 3.8E+02 0.0082 29.0 13.4 56 598-653 221-276 (312)
125 PF11932 DUF3450: Protein of u 44.1 2.6E+02 0.0057 29.5 11.7 50 588-637 51-100 (251)
126 PRK00295 hypothetical protein; 43.8 1.9E+02 0.0041 24.2 8.3 33 595-627 7-39 (68)
127 PRK12704 phosphodiesterase; Pr 43.7 6.2E+02 0.013 30.0 17.8 9 705-713 232-240 (520)
128 PF10779 XhlA: Haemolysin XhlA 43.3 1.4E+02 0.0031 25.0 7.6 46 591-636 4-49 (71)
129 PF04111 APG6: Autophagy prote 43.2 2.8E+02 0.0061 30.5 12.0 26 588-613 66-91 (314)
130 PF14193 DUF4315: Domain of un 43.2 2.2E+02 0.0048 24.9 8.8 31 597-627 5-35 (83)
131 PRK04406 hypothetical protein; 42.8 2.1E+02 0.0045 24.5 8.5 32 592-623 10-41 (75)
132 PF05837 CENP-H: Centromere pr 42.6 2.5E+02 0.0054 25.6 9.7 34 587-620 11-44 (106)
133 smart00338 BRLZ basic region l 42.5 1.5E+02 0.0033 24.1 7.6 31 596-626 29-59 (65)
134 PRK02119 hypothetical protein; 42.5 1.9E+02 0.0042 24.5 8.3 37 591-627 7-43 (73)
135 PF10186 Atg14: UV radiation r 41.6 4.6E+02 0.01 27.9 14.2 19 639-657 133-151 (302)
136 COG3879 Uncharacterized protei 41.5 1.5E+02 0.0034 31.2 9.0 57 606-662 56-112 (247)
137 PRK00736 hypothetical protein; 41.1 1.9E+02 0.0041 24.2 7.9 24 595-618 7-30 (68)
138 COG5185 HEC1 Protein involved 41.0 5.5E+02 0.012 29.6 13.6 46 605-650 373-418 (622)
139 PF04102 SlyX: SlyX; InterPro 40.5 1.5E+02 0.0034 24.7 7.4 41 592-632 10-50 (69)
140 PF07888 CALCOCO1: Calcium bin 40.1 2.8E+02 0.006 32.8 11.7 31 607-637 199-229 (546)
141 PF10481 CENP-F_N: Cenp-F N-te 40.1 1.6E+02 0.0034 31.4 8.8 55 583-637 71-125 (307)
142 PF09726 Macoilin: Transmembra 39.8 2.3E+02 0.0049 34.8 11.5 47 605-655 472-518 (697)
143 PRK10361 DNA recombination pro 39.6 6.8E+02 0.015 29.2 14.9 10 720-729 241-250 (475)
144 PRK04325 hypothetical protein; 39.5 1.9E+02 0.0042 24.6 7.9 39 594-632 10-48 (74)
145 PF10205 KLRAQ: Predicted coil 39.5 3E+02 0.0065 25.1 11.8 55 596-650 15-72 (102)
146 KOG4673 Transcription factor T 39.5 7.8E+02 0.017 29.9 15.0 145 550-701 675-820 (961)
147 PF07106 TBPIP: Tat binding pr 38.6 1.5E+02 0.0033 29.2 8.4 24 737-760 143-166 (169)
148 PF00261 Tropomyosin: Tropomyo 38.6 4.2E+02 0.0091 27.7 12.1 32 603-634 172-203 (237)
149 PF15035 Rootletin: Ciliary ro 38.5 2.8E+02 0.0061 27.9 10.2 44 598-641 86-129 (182)
150 PF10805 DUF2730: Protein of u 38.4 3.1E+02 0.0067 25.0 11.7 52 587-638 36-89 (106)
151 PF08763 Ca_chan_IQ: Voltage g 38.3 34 0.00073 24.8 2.5 18 521-538 10-27 (35)
152 KOG1029 Endocytic adaptor prot 38.3 8.5E+02 0.019 30.0 16.6 9 713-721 544-552 (1118)
153 KOG4403 Cell surface glycoprot 37.4 3.7E+02 0.0079 30.6 11.4 76 580-658 253-328 (575)
154 PRK00409 recombination and DNA 37.3 2.9E+02 0.0062 34.5 12.1 43 13-58 61-104 (782)
155 PF00170 bZIP_1: bZIP transcri 36.8 2E+02 0.0042 23.4 7.4 24 594-617 34-57 (64)
156 PRK00888 ftsB cell division pr 36.7 1.3E+02 0.0028 27.5 6.8 23 595-617 36-58 (105)
157 TIGR01069 mutS2 MutS2 family p 36.3 2.9E+02 0.0063 34.4 12.0 12 43-54 87-98 (771)
158 TIGR02680 conserved hypothetic 36.3 8.1E+02 0.018 32.7 16.6 36 500-535 225-261 (1353)
159 PF04849 HAP1_N: HAP1 N-termin 36.3 3.2E+02 0.0069 29.9 10.7 62 576-637 231-292 (306)
160 PF03962 Mnd1: Mnd1 family; I 36.0 4.6E+02 0.01 26.5 11.4 17 614-630 110-126 (188)
161 PF15254 CCDC14: Coiled-coil d 36.0 5.5E+02 0.012 31.6 13.3 23 637-659 541-563 (861)
162 PF07106 TBPIP: Tat binding pr 36.0 2.7E+02 0.0059 27.4 9.7 23 587-609 80-102 (169)
163 PRK02119 hypothetical protein; 36.0 2.7E+02 0.0058 23.7 8.1 14 642-655 40-53 (73)
164 PRK02793 phi X174 lysis protei 36.0 2.4E+02 0.0051 23.9 7.8 38 593-630 8-45 (72)
165 PF06156 DUF972: Protein of un 35.1 2.1E+02 0.0046 26.2 7.9 30 595-624 10-39 (107)
166 PF10212 TTKRSYEDQ: Predicted 34.9 3E+02 0.0065 32.2 10.7 60 590-653 445-508 (518)
167 PF00769 ERM: Ezrin/radixin/mo 34.8 2.8E+02 0.0061 29.3 10.1 14 755-768 187-200 (246)
168 KOG2264 Exostosin EXT1L [Signa 34.8 3E+02 0.0066 32.3 10.5 10 713-722 217-226 (907)
169 KOG1962 B-cell receptor-associ 34.2 5.5E+02 0.012 26.6 14.0 8 435-442 17-24 (216)
170 PF05377 FlaC_arch: Flagella a 34.2 1.8E+02 0.0038 23.5 6.2 23 595-617 9-31 (55)
171 PRK12704 phosphodiesterase; Pr 34.1 5.6E+02 0.012 30.3 13.3 8 703-710 289-296 (520)
172 KOG0243 Kinesin-like protein [ 34.1 3.3E+02 0.0072 34.6 11.6 63 594-656 484-549 (1041)
173 KOG4360 Uncharacterized coiled 34.0 8.3E+02 0.018 28.6 14.2 35 584-618 231-265 (596)
174 PF15290 Syntaphilin: Golgi-lo 33.7 2.8E+02 0.0062 29.7 9.4 73 581-657 70-142 (305)
175 smart00787 Spc7 Spc7 kinetocho 33.6 3E+02 0.0065 30.2 10.3 62 585-646 203-264 (312)
176 TIGR02894 DNA_bind_RsfA transc 33.5 2.4E+02 0.0053 27.7 8.4 31 590-620 108-138 (161)
177 PF07888 CALCOCO1: Calcium bin 33.5 4.7E+02 0.01 31.0 12.2 15 643-657 280-294 (546)
178 PF07798 DUF1640: Protein of u 33.3 5E+02 0.011 25.8 14.1 31 624-654 123-153 (177)
179 TIGR03185 DNA_S_dndD DNA sulfu 33.2 3E+02 0.0066 33.4 11.4 19 612-630 267-285 (650)
180 PF05377 FlaC_arch: Flagella a 32.9 2E+02 0.0043 23.2 6.3 36 596-631 3-38 (55)
181 PF12709 Kinetocho_Slk19: Cent 32.8 2.2E+02 0.0047 25.2 7.1 38 586-623 42-79 (87)
182 PF07926 TPR_MLP1_2: TPR/MLP1/ 32.7 4.3E+02 0.0093 24.9 11.1 36 597-632 70-105 (132)
183 PF15272 BBP1_C: Spindle pole 32.6 5.6E+02 0.012 26.2 11.5 59 591-649 87-149 (196)
184 PRK00846 hypothetical protein; 32.4 3.3E+02 0.0071 23.5 8.1 51 584-634 11-61 (77)
185 PF06810 Phage_GP20: Phage min 32.3 4.3E+02 0.0094 25.8 10.2 27 617-643 54-80 (155)
186 TIGR03319 YmdA_YtgF conserved 31.7 6.4E+02 0.014 29.8 13.2 20 701-720 281-300 (514)
187 PRK00888 ftsB cell division pr 31.7 1.7E+02 0.0036 26.7 6.7 30 597-626 31-60 (105)
188 PF05667 DUF812: Protein of un 31.7 4.6E+02 0.01 31.5 12.2 10 272-281 79-88 (594)
189 PF07716 bZIP_2: Basic region 31.7 2.3E+02 0.0049 22.3 6.7 25 596-620 28-52 (54)
190 KOG0018 Structural maintenance 31.5 8.8E+02 0.019 31.0 14.4 52 590-641 300-351 (1141)
191 KOG0995 Centromere-associated 31.5 5.2E+02 0.011 30.6 11.9 61 594-654 295-361 (581)
192 PRK02793 phi X174 lysis protei 31.3 3.2E+02 0.007 23.1 8.3 10 642-651 39-48 (72)
193 KOG3684 Ca2+-activated K+ chan 31.3 8.8E+02 0.019 28.1 18.6 42 619-660 428-469 (489)
194 PF05667 DUF812: Protein of un 31.2 4.6E+02 0.01 31.6 12.0 6 217-222 41-46 (594)
195 KOG4603 TBP-1 interacting prot 31.1 4.2E+02 0.0092 26.3 9.5 23 580-602 80-102 (201)
196 KOG4603 TBP-1 interacting prot 31.0 3.2E+02 0.007 27.1 8.7 34 602-635 81-114 (201)
197 PF13094 CENP-Q: CENP-Q, a CEN 30.9 5.1E+02 0.011 25.2 10.6 54 594-647 28-81 (160)
198 PF14282 FlxA: FlxA-like prote 30.9 1.8E+02 0.0039 26.5 6.8 15 589-603 22-36 (106)
199 COG3074 Uncharacterized protei 30.6 3.3E+02 0.0071 22.9 10.4 19 605-623 23-41 (79)
200 PRK00106 hypothetical protein; 30.5 7.1E+02 0.015 29.6 13.2 28 700-729 301-328 (535)
201 PF05278 PEARLI-4: Arabidopsis 30.5 5.1E+02 0.011 27.8 10.9 8 401-408 91-98 (269)
202 PF10146 zf-C4H2: Zinc finger- 30.2 6.6E+02 0.014 26.3 12.3 60 595-654 34-103 (230)
203 PRK13182 racA polar chromosome 30.0 5.8E+02 0.012 25.6 10.8 52 598-650 90-143 (175)
204 KOG0250 DNA repair protein RAD 30.0 1.3E+03 0.028 29.7 15.6 34 736-769 658-701 (1074)
205 TIGR01069 mutS2 MutS2 family p 29.7 4.1E+02 0.0089 33.1 11.7 7 433-439 425-431 (771)
206 PF03938 OmpH: Outer membrane 29.7 4.3E+02 0.0092 25.4 9.8 19 639-657 109-127 (158)
207 KOG0250 DNA repair protein RAD 29.6 1.3E+03 0.029 29.6 15.7 16 756-771 709-724 (1074)
208 PF10168 Nup88: Nuclear pore c 29.6 4.6E+02 0.0099 32.4 11.9 19 358-376 423-441 (717)
209 PRK00409 recombination and DNA 29.5 3.9E+02 0.0085 33.3 11.5 11 389-399 393-403 (782)
210 PF12004 DUF3498: Domain of un 29.5 18 0.00039 42.0 0.0 80 580-662 377-456 (495)
211 PF12128 DUF3584: Protein of u 29.2 1.4E+03 0.031 30.0 18.2 46 395-444 528-573 (1201)
212 PF06810 Phage_GP20: Phage min 29.1 5.5E+02 0.012 25.1 10.7 38 587-624 28-68 (155)
213 KOG2391 Vacuolar sorting prote 29.1 5.2E+02 0.011 28.6 10.7 13 289-301 18-30 (365)
214 KOG0353 ATP-dependent DNA heli 28.8 1.8E+02 0.004 32.3 7.4 68 600-680 11-80 (695)
215 PF05278 PEARLI-4: Arabidopsis 28.8 6.7E+02 0.014 26.9 11.4 15 615-629 215-229 (269)
216 PF02841 GBP_C: Guanylate-bind 28.4 3.6E+02 0.0078 29.2 9.9 10 623-632 245-254 (297)
217 PF12128 DUF3584: Protein of u 28.3 1.4E+03 0.03 30.1 16.8 55 601-655 314-375 (1201)
218 KOG0933 Structural maintenance 28.0 6.3E+02 0.014 32.1 12.3 44 599-642 250-293 (1174)
219 COG3879 Uncharacterized protei 27.8 3.2E+02 0.007 28.9 8.8 53 597-649 54-106 (247)
220 PF12777 MT: Microtubule-bindi 27.8 2E+02 0.0044 31.9 8.0 10 522-531 195-204 (344)
221 PRK13169 DNA replication intia 27.7 3.3E+02 0.0072 25.1 7.9 30 595-624 10-39 (110)
222 PRK00106 hypothetical protein; 27.7 8.7E+02 0.019 28.9 13.3 23 702-724 244-269 (535)
223 PF12240 Angiomotin_C: Angiomo 27.6 6.9E+02 0.015 25.7 11.7 47 608-654 58-104 (205)
224 PF06409 NPIP: Nuclear pore co 26.7 7.5E+02 0.016 25.9 10.8 40 603-642 137-176 (265)
225 PRK00295 hypothetical protein; 26.7 3.8E+02 0.0082 22.4 8.1 34 591-624 10-43 (68)
226 PF04880 NUDE_C: NUDE protein, 26.6 1E+02 0.0022 30.6 4.7 23 596-618 3-25 (166)
227 PF07926 TPR_MLP1_2: TPR/MLP1/ 26.4 5.5E+02 0.012 24.2 12.3 51 603-653 62-112 (132)
228 PRK04406 hypothetical protein; 26.4 4.1E+02 0.0089 22.7 8.7 12 642-653 42-53 (75)
229 KOG3990 Uncharacterized conser 26.3 3.5E+02 0.0075 28.5 8.5 66 585-654 231-296 (305)
230 PF10498 IFT57: Intra-flagella 26.3 9.6E+02 0.021 26.9 15.0 16 642-657 304-319 (359)
231 PF06818 Fez1: Fez1; InterPro 26.3 7.3E+02 0.016 25.5 11.1 17 698-714 136-152 (202)
232 PF10234 Cluap1: Clusterin-ass 26.1 5.6E+02 0.012 27.5 10.4 13 400-412 3-15 (267)
233 PRK00736 hypothetical protein; 26.1 3.9E+02 0.0085 22.3 8.2 29 590-618 9-37 (68)
234 TIGR03319 YmdA_YtgF conserved 25.8 1.1E+03 0.025 27.7 17.7 12 703-714 224-235 (514)
235 KOG0976 Rho/Rac1-interacting s 25.6 9.9E+02 0.022 29.6 12.9 14 754-767 288-301 (1265)
236 PF07195 FliD_C: Flagellar hoo 25.6 1.9E+02 0.0042 30.2 7.0 44 608-651 194-237 (239)
237 PF07499 RuvA_C: RuvA, C-termi 25.3 1E+02 0.0023 23.5 3.6 27 26-55 3-29 (47)
238 KOG0377 Protein serine/threoni 25.0 64 0.0014 36.5 3.2 19 471-489 17-35 (631)
239 KOG2264 Exostosin EXT1L [Signa 25.0 4E+02 0.0087 31.4 9.4 14 698-711 209-222 (907)
240 PF06295 DUF1043: Protein of u 24.7 5.9E+02 0.013 24.0 11.2 55 604-658 29-83 (128)
241 TIGR00219 mreC rod shape-deter 24.6 2E+02 0.0043 31.2 6.9 24 601-624 67-90 (283)
242 PF10267 Tmemb_cc2: Predicted 24.5 5.8E+02 0.013 29.0 10.7 16 642-657 301-316 (395)
243 PHA02562 46 endonuclease subun 24.5 4.4E+02 0.0095 31.1 10.6 47 590-636 355-401 (562)
244 PF09755 DUF2046: Uncharacteri 23.5 1E+03 0.022 26.2 11.7 17 698-714 227-243 (310)
245 KOG4571 Activating transcripti 23.5 6.4E+02 0.014 27.3 10.1 28 610-637 251-278 (294)
246 KOG1003 Actin filament-coating 23.5 6.9E+02 0.015 25.5 9.7 68 585-652 3-73 (205)
247 PF09738 DUF2051: Double stran 23.4 1E+03 0.022 26.1 16.3 18 582-599 80-97 (302)
248 PHA02562 46 endonuclease subun 23.4 5.7E+02 0.012 30.1 11.2 21 692-712 466-486 (562)
249 PF14818 DUF4482: Domain of un 23.1 1.6E+02 0.0036 28.3 5.1 30 625-654 20-49 (141)
250 PF12777 MT: Microtubule-bindi 23.1 6.7E+02 0.014 27.8 11.0 20 738-757 241-260 (344)
251 PF10376 Mei5: Double-strand r 23.0 5.3E+02 0.012 26.9 9.4 54 597-650 142-196 (221)
252 KOG0933 Structural maintenance 22.8 1.6E+03 0.035 28.7 14.4 24 434-457 603-631 (1174)
253 PRK14161 heat shock protein Gr 22.8 5.8E+02 0.013 25.6 9.3 46 591-636 17-62 (178)
254 KOG4360 Uncharacterized coiled 22.7 1.2E+03 0.027 27.2 12.6 17 580-596 234-250 (596)
255 PF10146 zf-C4H2: Zinc finger- 22.7 9E+02 0.02 25.3 12.2 35 602-636 55-89 (230)
256 PF07439 DUF1515: Protein of u 22.4 6.2E+02 0.013 23.3 8.5 54 602-655 10-63 (112)
257 PF03978 Borrelia_REV: Borreli 22.4 5.6E+02 0.012 25.1 8.5 53 603-657 50-102 (160)
258 PRK14160 heat shock protein Gr 22.3 5.5E+02 0.012 26.6 9.2 50 588-637 56-105 (211)
259 PF07407 Seadorna_VP6: Seadorn 22.3 2.6E+02 0.0057 30.5 6.9 39 597-635 36-76 (420)
260 KOG4343 bZIP transcription fac 22.2 2.6E+02 0.0056 32.7 7.3 42 586-627 302-343 (655)
261 KOG0976 Rho/Rac1-interacting s 22.1 6.2E+02 0.014 31.2 10.5 53 584-636 104-156 (1265)
262 KOG0243 Kinesin-like protein [ 21.8 1.4E+03 0.03 29.4 13.9 36 585-620 482-517 (1041)
263 PF09730 BicD: Microtubule-ass 21.7 1.6E+03 0.034 27.8 15.7 37 594-630 122-158 (717)
264 PF03338 Pox_J1: Poxvirus J1 p 21.7 2E+02 0.0043 27.6 5.3 72 290-372 63-135 (145)
265 PF07407 Seadorna_VP6: Seadorn 21.7 4.1E+02 0.0089 29.1 8.2 23 698-720 188-211 (420)
266 PF12329 TMF_DNA_bd: TATA elem 21.6 5E+02 0.011 22.0 10.0 20 610-629 36-55 (74)
267 PF14282 FlxA: FlxA-like prote 21.4 6.2E+02 0.013 23.0 8.8 20 636-655 55-74 (106)
268 KOG1029 Endocytic adaptor prot 21.3 1.6E+03 0.035 27.8 15.8 25 588-612 488-512 (1118)
269 PRK10636 putative ABC transpor 21.1 3.3E+02 0.0072 33.0 8.7 27 35-61 32-60 (638)
270 PF04977 DivIC: Septum formati 21.0 3.4E+02 0.0073 22.6 6.4 21 597-617 28-48 (80)
271 PF09486 HrpB7: Bacterial type 21.0 8.1E+02 0.018 24.2 9.7 55 591-645 91-145 (158)
272 PF10883 DUF2681: Protein of u 20.9 5.9E+02 0.013 22.5 8.9 41 595-635 25-65 (87)
273 PRK03918 chromosome segregatio 20.7 7.6E+02 0.016 31.0 12.1 9 453-461 130-138 (880)
274 PHA02047 phage lambda Rz1-like 20.7 6.3E+02 0.014 22.8 7.8 39 610-648 37-75 (101)
275 PF15619 Lebercilin: Ciliary p 20.6 9.1E+02 0.02 24.6 10.7 30 588-617 120-149 (194)
276 PF02403 Seryl_tRNA_N: Seryl-t 20.6 6.2E+02 0.013 22.7 9.2 63 579-641 36-101 (108)
277 PF15188 CCDC-167: Coiled-coil 20.5 5.3E+02 0.011 22.7 7.3 23 581-603 7-29 (85)
278 PRK10698 phage shock protein P 20.5 9.6E+02 0.021 24.8 13.7 12 737-748 206-217 (222)
279 PF10212 TTKRSYEDQ: Predicted 20.5 1.1E+03 0.023 27.8 11.9 20 402-421 281-300 (518)
280 PF14662 CCDC155: Coiled-coil 20.5 9.2E+02 0.02 24.6 11.8 17 604-620 99-115 (193)
281 PF06008 Laminin_I: Laminin Do 20.4 7.7E+02 0.017 26.1 10.4 75 693-769 123-204 (264)
282 TIGR02680 conserved hypothetic 20.4 2.1E+03 0.046 28.9 22.7 29 737-765 457-485 (1353)
283 PF15035 Rootletin: Ciliary ro 20.4 8.9E+02 0.019 24.4 10.7 61 595-655 97-157 (182)
284 PF12004 DUF3498: Domain of un 20.3 34 0.00074 39.8 0.0 48 603-650 372-419 (495)
No 1
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=100.00 E-value=1.6e-132 Score=1172.96 Aligned_cols=542 Identities=41% Similarity=0.701 Sum_probs=498.6
Q ss_pred CCccCccccCCCccccCCcccHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhcCeeEEeeCCCCceeecCchHHHHH
Q 003820 2 SAKEYKYLRQSSCYSINGVDDAEQFRIVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNENHVEPVADEGLITV 81 (793)
Q Consensus 2 ~~~~y~yL~~~~~~~~~~~dD~~~f~~~~~Al~~lg~~~~~~~~if~ilaaILhLGNi~F~~~~~~~~~~~~~~~~l~~~ 81 (793)
.|++|.||++|+|..|+||||+++|+.|+.||++|||++++|.+||+|||||||||||+|..+. ++.+.+.+++.++.+
T Consensus 279 ~~~dY~Yl~~~~~~~I~gIdD~kefk~t~~AlktiGi~~eeq~~IF~iLAaILhiGNIef~~~r-~g~a~~~~~~~~~~~ 357 (1463)
T COG5022 279 NPKDYIYLSQGGCDKIDGIDDAKEFKITLDALKTIGIDEEEQDQIFKILAAILHIGNIEFKEDR-NGAAIFSDNSVLDKA 357 (1463)
T ss_pred ChHhhHhHhhcCCCcCCCcccHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHhhcceeeeecc-cchhhcCCchHHHHH
Confidence 5899999999999999999999999999999999999999999999999999999999998754 456788899999999
Q ss_pred HHHhCCCHHHHHHHHccceeeecCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCcceeEEeecC
Q 003820 82 AKLIGCDIGELKLALSTRKMRVGNDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIY 161 (793)
Q Consensus 82 a~LLgv~~~~L~~~L~~~~i~~~~e~i~~~lt~~qA~~~rdaLak~LY~rLF~wlV~~IN~~l~~~~~~~~~~IgILDI~ 161 (793)
|.|||||+..|.++|+.|.|++|+|.|.+++|..||...||||||+||++||+|||++||.+|..+.. ..+||||||||
T Consensus 358 c~LLgId~~~f~k~lvk~~ikt~~E~i~~~~n~~QA~~irdslAK~lY~~lFdwiV~rIN~sL~~~~~-~~~fIGVLDIy 436 (1463)
T COG5022 358 CYLLGIDPSLFVKWLVKRQIKTGGEWIVVPLNLEQALAIRDSLAKALYSNLFDWIVDRINKSLDHSAA-ASNFIGVLDIY 436 (1463)
T ss_pred HHHhCCCHHHHHHHHHHhHhhcCceEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccc-cccceeEEeec
Confidence 99999999999999999999999999999999999999999999999999999999999999987554 56899999999
Q ss_pred CCccCCCCChhHHHHHHhhHHHHHHHHHHhhHHHHHHHhhcCCcccccccCCchhHHHhhhc-CCCccccccccccCCCC
Q 003820 162 GFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEK-KPLGLLSLLDEESTFPN 240 (793)
Q Consensus 162 GFE~f~~NsfEQlcINyaNEkLq~~f~~~~f~~eqeeY~~EgI~w~~i~f~dN~~~ldLie~-kp~Gil~lLDee~~~p~ 240 (793)
|||+|+.|||||||||||||||||+||+|||++|||||.+|||+|++|+|.|||+||||||+ .|.|||++|||||.+|.
T Consensus 437 GFEiFEkNSFEQlCINYtNEKLQQ~Fn~h~FklEQEeY~kE~IeW~~Idy~DnQ~~IDLIE~~~p~GIlslLDEE~~~p~ 516 (1463)
T COG5022 437 GFEIFEKNSFEQLCINYTNEKLQQFFNQHMFKLEQEEYVKEGIEWSFIDYFDNQPCIDLIEKKNPLGILSLLDEECVMPH 516 (1463)
T ss_pred chhhhccCcHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCcccccccccCcchhHHHhccCCCchHhhhcHHhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999998 57899999999999999
Q ss_pred CCcHHHHHHHHHHcC--CCCccccCC--CCCcEEEecCccccccccchhhhccccccHHHHHHHhhcCCch-HHHhhhcc
Q 003820 241 GTDLTFANKLKQHLN--SNPCFRGER--DKSFTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCSCHL-PQIFASNM 315 (793)
Q Consensus 241 ~tD~~f~~kl~~~~~--~~~~~~~~~--~~~F~I~HyaG~V~Y~v~gfleKN~D~l~~~~~~ll~~S~~~~-~~lf~~~~ 315 (793)
|||++|..||.+.+. +++.|.++| +..|+|+||||+|+|+|.||++||+|+++.++++||..|++++ ..+|....
T Consensus 517 atd~s~~sKL~~~l~~~~~~~f~~~rf~~~~FvvkHYAgDVeY~veg~ldKNkD~l~~~ll~Ll~~StNe~vs~Lf~~~~ 596 (1463)
T COG5022 517 ATDESFTSKLAQRLNKNSNPKFKKSRFRDNKFVVKHYAGDVEYDVEGFLDKNKDPLNDDLLELLKASTNEFVSTLFDDEE 596 (1463)
T ss_pred CCchHHHHHHHHHhccccCccccccccCCCceEEEeecccceeeccchhhhCcchhhHHHHHHHhhccchHHHHhhhhhh
Confidence 999999999999876 567888775 5689999999999999999999999999999999999999986 56887322
Q ss_pred cccCCCCccCCCccCCCCCCCCccHHHHHHHHHHHHHHHHhccCCeeeeecCCCCCCCCCccchhHHHHHhhhhChhHHH
Q 003820 316 LSQSNKPVVGPLYKAGGADSQKLSVATKFKGQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVV 395 (793)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~tv~~~f~~~L~~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~v 395 (793)
... ..+.++|+|+.|+.||+.||.+|++|+||||||||||..|+|+.||..+|++|||||||+|+|
T Consensus 597 ~~~--------------~K~~~pT~gs~~K~sl~~Lm~tl~sTqphyIRCIkPN~~K~p~~fD~~mVL~QLr~~GVlE~I 662 (1463)
T COG5022 597 NIE--------------SKGRFPTLGSRFKESLNSLMSTLNSTQPHYIRCIKPNEEKSPWTFDNQMVLSQLRCCGVLETI 662 (1463)
T ss_pred hcc--------------ccCCCCcHHHHHHHHHHHHHHHHHhcCCceeEeeCCCcccCccccchHHHHHHHHhcchhhhe
Confidence 111 124579999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCccChHHHHHHhhccccccCCC------CChHHHHHHHHHHcCCCCcceeecceeeeeeecccccccccccc
Q 003820 396 RISRSGFPTRMSHQKFARRYGFLLLESVAS------QDPLSVSVAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTRNR 469 (793)
Q Consensus 396 ri~r~Gyp~r~~~~eF~~RY~~L~~~~~~~------~d~~~~~~~il~~~~~~~~~~~vGkTKVFlr~~~~~~LE~~R~~ 469 (793)
||+|+|||.|++|+||+.||.+|.|...-. .|.+.+|..||..+.+|+..|++|.|||||+.+++..||++|..
T Consensus 663 RIsraGFP~R~~f~EFv~RY~IL~p~~~~~~~~~~~~~~~~~~~~IL~~~~id~~~YqiG~TKvFfKagvL~~LE~~Rd~ 742 (1463)
T COG5022 663 RISRAGFPSRWTFDEFVQRYRILSPSKSWTGEYTWKEDTKNAVKSILEELVIDSSKYQIGNTKVFFKAGVLAALEDMRDA 742 (1463)
T ss_pred eeccccCchhhhHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHhhcCChhheeccceeEEeeCchHHHHHHHHHH
Confidence 999999999999999999999999864321 36789999999999999999999999999999999999999999
Q ss_pred cch-hhHhhhhhhcccccchhhcccccchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHhhhhHHHH
Q 003820 470 TLH-GILRVQSCFRGHQARLCLKELRRGIVALQSFIRGEKIRKEYALVLQRHRAAVVIQRQIKSRVARQKLKNIKYSSIM 548 (793)
Q Consensus 470 ~l~-aa~~IQ~~~Rg~~~R~~~~~~~~a~i~IQs~~Rg~~aRr~~~~l~~~~~AAi~IQ~~~R~~~~R~~~~~~r~aai~ 548 (793)
.++ .++.||+.|||+..|++|......+..||...+|+..|+.+..-. ..++++.||..|+....|..|......++.
T Consensus 743 ~~~~~~~~iq~aiR~~~~rrr~~~~~k~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~r~~~~~~~~~i~~ 821 (1463)
T COG5022 743 KLDNIATRIQRAIRGRYLRRRYLQALKRIKKIQVIQHGFRLRRLVDYEL-KWRLFIKLQPLLSLLGSRKEYRSYLACIIK 821 (1463)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhcccch-HHHhHHHhhHHhHHHhhHHHHHHHHHHHHH
Confidence 886 557899999999999999999999999999999999887664433 346899999999999999999988888888
Q ss_pred HH-HHHhhHHHHh
Q 003820 549 IQ-SVIRGWLVRR 560 (793)
Q Consensus 549 IQ-s~~Rg~~aRr 560 (793)
+| ..+|....+-
T Consensus 822 lq~~i~~~~~~~~ 834 (1463)
T COG5022 822 LQKTIKREKKLRE 834 (1463)
T ss_pred HHHHHHHHHHHhH
Confidence 88 5565555544
No 2
>PTZ00014 myosin-A; Provisional
Probab=100.00 E-value=1.6e-126 Score=1127.29 Aligned_cols=494 Identities=27% Similarity=0.482 Sum_probs=436.5
Q ss_pred CCccCccccCCCccccCCcccHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhcCeeEEeeCC---CCceeecC--ch
Q 003820 2 SAKEYKYLRQSSCYSINGVDDAEQFRIVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDN---ENHVEPVA--DE 76 (793)
Q Consensus 2 ~~~~y~yL~~~~~~~~~~~dD~~~f~~~~~Al~~lg~~~~~~~~if~ilaaILhLGNi~F~~~~~---~~~~~~~~--~~ 76 (793)
++++|+||++ +|..++++||+++|+.|+.||++|||+++++..||+|||||||||||+|...+. ++.+.+.+ .+
T Consensus 308 ~~~~y~yL~~-~~~~~~~~dD~~~f~~~~~A~~~lg~s~~e~~~If~ilaaILhLGNi~F~~~~~~~~~~~~~i~~~~~~ 386 (821)
T PTZ00014 308 SLEEYKYINP-KCLDVPGIDDVKDFEEVMESFDSMGLSESQIEDIFSILSGVLLLGNVEIEGKEEGGLTDAAAISDESLE 386 (821)
T ss_pred ChHhccccCC-CCccCCCCchHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceeEeccccCCCCCceeccCCCHH
Confidence 4789999996 589999999999999999999999999999999999999999999999986532 23455544 45
Q ss_pred HHHHHHHHhCCCHHHHHHHHccceeeecCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCcceeE
Q 003820 77 GLITVAKLIGCDIGELKLALSTRKMRVGNDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSIS 156 (793)
Q Consensus 77 ~l~~~a~LLgv~~~~L~~~L~~~~i~~~~e~i~~~lt~~qA~~~rdaLak~LY~rLF~wlV~~IN~~l~~~~~~~~~~Ig 156 (793)
.+..||+||||++++|.++|+++++.+|++.|++++|++||..+||||||+||++||+|||.+||.+|.+.. ....+||
T Consensus 387 ~l~~~a~LLgv~~~~L~~~L~~~~~~~~~e~i~~~~~~~qA~~~rdalaK~lY~rLF~wiV~~IN~~l~~~~-~~~~~IG 465 (821)
T PTZ00014 387 VFNEACELLFLDYESLKKELTVKVTYAGNQKIEGPWSKDESEMLKDSLSKAVYEKLFLWIIRNLNATIEPPG-GFKVFIG 465 (821)
T ss_pred HHHHHHHHhCCCHHHHHHHhhceEEEeCCeeEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-ccCceEE
Confidence 899999999999999999999999999999999999999999999999999999999999999999998644 3467999
Q ss_pred EeecCCCccCCCCChhHHHHHHhhHHHHHHHHHHhhHHHHHHHhhcCCcccccccCCchhHHHhhhcCCCcccccccccc
Q 003820 157 ILDIYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEKKPLGLLSLLDEES 236 (793)
Q Consensus 157 ILDI~GFE~f~~NsfEQlcINyaNEkLq~~f~~~~f~~eqeeY~~EgI~w~~i~f~dN~~~ldLie~kp~Gil~lLDee~ 236 (793)
||||||||+|+.|||||||||||||+|||+|+++||+.||+||.+|||+|++|+|.||++|||||+++|.|||++|||||
T Consensus 466 iLDI~GFE~f~~NSfEQLcINy~NEkLQq~F~~~vF~~EqeeY~~EgI~~~~i~f~dN~~~idLie~k~~GIl~lLDEec 545 (821)
T PTZ00014 466 MLDIFGFEVFKNNSLEQLFINITNEMLQKNFVDIVFERESKLYKDEGISTEELEYTSNESVIDLLCGKGKSVLSILEDQC 545 (821)
T ss_pred EEecccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCcHHHHHHHhcCCccHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcHHHHHHHHHHcCCCCccccCC---CCCcEEEecCccccccccchhhhccccccHHHHHHHhhcCCchH-HHhh
Q 003820 237 TFPNGTDLTFANKLKQHLNSNPCFRGER---DKSFTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCSCHLP-QIFA 312 (793)
Q Consensus 237 ~~p~~tD~~f~~kl~~~~~~~~~~~~~~---~~~F~I~HyaG~V~Y~v~gfleKN~D~l~~~~~~ll~~S~~~~~-~lf~ 312 (793)
++|++||++|++||++++++||+|..++ +..|+|+||||+|+|+++||++||+|+|+++++++|++|+++++ .+|.
T Consensus 546 ~~p~~tD~~f~~kl~~~~~~~~~f~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKNkD~l~~~~~~ll~~S~n~~i~~lf~ 625 (821)
T PTZ00014 546 LAPGGTDEKFVSSCNTNLKNNPKYKPAKVDSNKNFVIKHTIGDIQYCASGFLFKNKDVLRPELVEVVKASPNPLVRDLFE 625 (821)
T ss_pred CCCCCCHHHHHHHHHHHhcCCCCccCCCCCCCCceEEEEeceeeeeccCcHHHhccccchHHHHHHHHhCccHHHHHHhc
Confidence 9999999999999999999999998764 46899999999999999999999999999999999999999976 5786
Q ss_pred hcccccCCCCccCCCccCCCCCCCCccHHHHHHHHHHHHHHHHhccCCeeeeecCCCCCCCCCccchhHHHHHhhhhChh
Q 003820 313 SNMLSQSNKPVVGPLYKAGGADSQKLSVATKFKGQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVL 392 (793)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~f~~~L~~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvl 392 (793)
...... + ...+.+||+++|+.||+.||++|++|+||||||||||+.+.|+.||..+|++||||+|||
T Consensus 626 ~~~~~~-~------------~~~k~~tv~s~Fk~qL~~Lm~~L~~t~phfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvL 692 (821)
T PTZ00014 626 GVEVEK-G------------KLAKGQLIGSQFLNQLDSLMSLINSTEPHFIRCIKPNENKKPLDWNSSKVLIQLHSLSIL 692 (821)
T ss_pred cccccc-c------------cccCCCcHHHHHHHHHHHHHHHHhccCCeEEEEeCcCcccCccccchHhHHHHhhhhhHH
Confidence 432110 0 112347999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCccChHHHHHHhhccccccCCC--CChHHHHHHHHHHcCCCCcceeecceeeeeeeccccccccccccc
Q 003820 393 EVVRISRSGFPTRMSHQKFARRYGFLLLESVAS--QDPLSVSVAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTRNRT 470 (793)
Q Consensus 393 e~vri~r~Gyp~r~~~~eF~~RY~~L~~~~~~~--~d~~~~~~~il~~~~~~~~~~~vGkTKVFlr~~~~~~LE~~R~~~ 470 (793)
|+|||+|.|||+|++|.+|+.||++|.+...+. .|+++.|+.||..+++++++|++|+||||||.+++..||..|...
T Consensus 693 E~iri~r~Gyp~R~~f~~F~~rY~~L~~~~~~~~~~d~k~~~~~il~~~~l~~~~~~iGkTKVFlr~~~~~~Le~~~~~~ 772 (821)
T PTZ00014 693 EALQLRQLGFSYRRTFAEFLSQFKYLDLAVSNDSSLDPKEKAEKLLERSGLPKDSYAIGKTMVFLKKDAAKELTQIQREK 772 (821)
T ss_pred HHHHHHhcCCcccccHHHHHHHHHhcCcccccCCCCCHHHHHHHHHHHcCCCcccEEecCCeEEEcCcHHHHHHHHHHHH
Confidence 999999999999999999999999998876543 489999999999999999999999999999999999999887665
Q ss_pred ch----hhHhhhhhhcccccchhhcccccchhhhhhHHHHHHHH
Q 003820 471 LH----GILRVQSCFRGHQARLCLKELRRGIVALQSFIRGEKIR 510 (793)
Q Consensus 471 l~----aa~~IQ~~~Rg~~~R~~~~~~~~a~i~IQs~~Rg~~aR 510 (793)
+. .+..||++||||++|++|++++.++++||++|||++++
T Consensus 773 ~~~~~~~~~~iq~~~r~~~~r~~~~~~~~~~~~iQ~~~R~~l~~ 816 (821)
T PTZ00014 773 LAAWEPLVSVLEALILKIKKKRKVRKNIKSLVRIQAHLRRHLVI 816 (821)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 23344444444444444444444444444444444333
No 3
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=100.00 E-value=3.7e-121 Score=1069.47 Aligned_cols=464 Identities=85% Similarity=1.312 Sum_probs=435.6
Q ss_pred CCccCccccCCCccccCCcccHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhcCeeEEeeCCCCceeecCchHHHHH
Q 003820 2 SAKEYKYLRQSSCYSINGVDDAEQFRIVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNENHVEPVADEGLITV 81 (793)
Q Consensus 2 ~~~~y~yL~~~~~~~~~~~dD~~~f~~~~~Al~~lg~~~~~~~~if~ilaaILhLGNi~F~~~~~~~~~~~~~~~~l~~~ 81 (793)
++.+|+||++++|..++++||+.+|+.|+.||+.|||+++++..||+|||||||||||+|...++++.+.+.+++.+..|
T Consensus 214 ~~~~y~yL~~~~~~~~~~~dd~~~f~~~~~al~~lG~~~~e~~~I~~iLaaILhLGNi~F~~~~~~~~~~~~~~~~l~~~ 293 (677)
T cd01383 214 SASEYKYLKQSCCYSINGVDDAQRFHTLVEALDIVHISKEDQENVFAMLAAVLWLGNVSFTVIDNENHVEPVADEALSTA 293 (677)
T ss_pred CHHHCceecCCCcccCCCccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceEEEecCCCcccccCChHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999998777667778888999999
Q ss_pred HHHhCCCHHHHHHHHccceeeecCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCcceeEEeecC
Q 003820 82 AKLIGCDIGELKLALSTRKMRVGNDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIY 161 (793)
Q Consensus 82 a~LLgv~~~~L~~~L~~~~i~~~~e~i~~~lt~~qA~~~rdaLak~LY~rLF~wlV~~IN~~l~~~~~~~~~~IgILDI~ 161 (793)
|.||||++++|.++|+++++.++++.+.+++|++||.++||+|||+||++||+|||.+||.+|.++......+|||||||
T Consensus 294 a~LLgv~~~~L~~~l~~~~~~~~~e~~~~~~~~~qa~~~rdalak~lY~~lF~wiV~~IN~~l~~~~~~~~~~IgiLDI~ 373 (677)
T cd01383 294 AKLIGCNIEDLMLALSTRKMHVNNDNIVQKLTLQQAIDARDALAKSIYASLFDWLVEQINKSLEVGKRRTGRSISILDIY 373 (677)
T ss_pred HHHhCCCHHHHHHHhhhcEEEeCCceEeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccceEEEeecc
Confidence 99999999999999999999999999999999999999999999999999999999999999998665567899999999
Q ss_pred CCccCCCCChhHHHHHHhhHHHHHHHHHHhhHHHHHHHhhcCCcccccccCCchhHHHhhhcCCCccccccccccCCCCC
Q 003820 162 GFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEKKPLGLLSLLDEESTFPNG 241 (793)
Q Consensus 162 GFE~f~~NsfEQlcINyaNEkLq~~f~~~~f~~eqeeY~~EgI~w~~i~f~dN~~~ldLie~kp~Gil~lLDee~~~p~~ 241 (793)
|||+|+.||||||||||||||||++|++++|+.||++|.+|||+|++|+|.||++|||||+++|.|||++|||||++|++
T Consensus 374 GFE~f~~NsfEQLcINyaNEkLQ~~f~~~vF~~EqeeY~~EgI~~~~i~f~dN~~~ldLie~kp~Gil~lLdee~~~p~~ 453 (677)
T cd01383 374 GFESFDKNSFEQFCINYANERLQQHFNRHLFKLEQEEYEEDGIDWTKVEFEDNQECLDLFEKKPLGLLSLLDEESTFPNA 453 (677)
T ss_pred ccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCcHHHHHHHhcCCccHHHHhHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHcCCCCccccCCCCCcEEEecCccccccccchhhhccccccHHHHHHHhhcCCchHHHhhhcccccCCC
Q 003820 242 TDLTFANKLKQHLNSNPCFRGERDKSFTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCSCHLPQIFASNMLSQSNK 321 (793)
Q Consensus 242 tD~~f~~kl~~~~~~~~~~~~~~~~~F~I~HyaG~V~Y~v~gfleKN~D~l~~~~~~ll~~S~~~~~~lf~~~~~~~~~~ 321 (793)
||++|++||++++++||+|.++++..|+|+||||+|+|+++||++||+|.++.+++++|++|++++..+|...+..++
T Consensus 454 tD~~f~~kl~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~v~gfleKNrD~l~~~~~~ll~~S~~~~~~~f~~~~~~~s-- 531 (677)
T cd01383 454 TDLTFANKLKQHLKTNSCFRGERGGAFTVRHYAGEVTYDTTGFLEKNRDLLHSDSIQLLSSCKCQLPQLFASSMLIQS-- 531 (677)
T ss_pred CHHHHHHHHHHHhCCCCCCCCCCCCceEEEEeccceeecCCChHHhccccccHHHHHHHHhCchHHHHHHHhhhhccc--
Confidence 999999999999999999998888899999999999999999999999999999999999999999999976543322
Q ss_pred CccCCCccCCCCCCCCccHHHHHHHHHHHHHHHHhccCCeeeeecCCCCCCCCCccchhHHHHHhhhhChhHHHHHHhcC
Q 003820 322 PVVGPLYKAGGADSQKLSVATKFKGQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSG 401 (793)
Q Consensus 322 ~~~~~~~~~~~~~~~~~tv~~~f~~~L~~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~vri~r~G 401 (793)
+..++..+.++...+..||+++|+.||+.||+.|++|+||||||||||+.+.|+.||..+|++||||+||||+|+|+|.|
T Consensus 532 ~~~~~~~~~~~~~~~~~tv~~~fk~qL~~L~~~L~~t~phfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~G 611 (677)
T cd01383 532 PVVGPLYVASAADSQKLSVGTKFKGQLFKLMQQLENTTPHFIRCIKPNNKQLPGIYEQGLVLQQLRCCGVLEVVRISRSG 611 (677)
T ss_pred cccccccccccccccCcchHHHHHHHHHHHHHHHhCCCCeEEEEECcccccCcCccchhhhHHHhhhccHHHHHHHHhcC
Confidence 11122122223345678999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccChHHHHHHhhccccccCCCCChHHHHHHHHHHcCCCCcceeecceeeeeeecccccccccc
Q 003820 402 FPTRMSHQKFARRYGFLLLESVASQDPLSVSVAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTR 467 (793)
Q Consensus 402 yp~r~~~~eF~~RY~~L~~~~~~~~d~~~~~~~il~~~~~~~~~~~vGkTKVFlr~~~~~~LE~~R 467 (793)
||+|++|.+|+.||++|++..+...|++..|+.||+.+++++++|++|+||||||.+++..||+.|
T Consensus 612 yp~R~~~~~F~~rY~~L~~~~~~~~~~~~~~~~il~~~~~~~~~~~~GkTKVFlr~~~~~~LE~~r 677 (677)
T cd01383 612 YPTRMTHQEFARRYGFLLLENIASQDPLSVSVAILQQFNILPEMYQVGYTKLFFRTGQIGALEDTR 677 (677)
T ss_pred CCccccHHHHHHHHHHhCccccCCCCHHHHHHHHHHhcCCCcccEEeccceEEecCcHHHHHhhcC
Confidence 999999999999999999988777799999999999999999999999999999999999999875
No 4
>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=100.00 E-value=1.3e-117 Score=973.27 Aligned_cols=537 Identities=32% Similarity=0.565 Sum_probs=482.7
Q ss_pred CCccCccccCCCccccCCcccHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhcCeeEEeeCCCCceeecCchHHHHH
Q 003820 2 SAKEYKYLRQSSCYSINGVDDAEQFRIVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNENHVEPVADEGLITV 81 (793)
Q Consensus 2 ~~~~y~yL~~~~~~~~~~~dD~~~f~~~~~Al~~lg~~~~~~~~if~ilaaILhLGNi~F~~~~~~~~~~~~~~~~l~~~ 81 (793)
+|..|.||+|| |..+.+++|+.+|+.+..||.+|||+++|+.++|+|+|||||||||.|.+.++ ..-+++...+..+
T Consensus 223 ~~~~Y~ylnqg-~~~v~sinD~~dfk~V~~Am~vIgFs~eEVe~v~~iiAavLhLGNv~f~~~ed--~~~~~~~~~l~~~ 299 (1001)
T KOG0164|consen 223 NPQSYNYLNQG-SAKVSSINDASDFKAVQKAMRVIGFSEEEVESVLSIIAAVLHLGNVEFADNED--SSGIVNGAQLKYI 299 (1001)
T ss_pred Ccchhhhhhhh-hhhhcccccHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccceEEeecCc--ccccchhHHHHHH
Confidence 57899999997 88999999999999999999999999999999999999999999999986543 3344556899999
Q ss_pred HHHhCCCHHHHHHHHccceeeecCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCC----CCcceeEE
Q 003820 82 AKLIGCDIGELKLALSTRKMRVGNDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKR----RTGRSISI 157 (793)
Q Consensus 82 a~LLgv~~~~L~~~L~~~~i~~~~e~i~~~lt~~qA~~~rdaLak~LY~rLF~wlV~~IN~~l~~~~~----~~~~~IgI 157 (793)
|+||++.+++|.++||+|++.+|||.+.+++|++||.++||||||+||+|||+|||.+||.+|.+... .....||+
T Consensus 300 aell~v~~del~~aL~~Rtvaa~~e~v~k~hn~~qA~YaRDAlAKaiY~RlF~Wiv~rIn~~i~~~~~~~~~~~~~Vigv 379 (1001)
T KOG0164|consen 300 AELLSVTGDELERALTSRTVAAGGEIVLKQHNVEQASYARDALAKAIYSRLFTWIVNRINRSIEVKGVITLRKGNTVIGV 379 (1001)
T ss_pred HHHHcCCHHHHHHHHHHHHHHhccchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhheecccccccccCceEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999987532 22368999
Q ss_pred eecCCCccCCCCChhHHHHHHhhHHHHHHHHHHhhHHHHHHHhhcCCcccccccCCchhHHHhhhcCCCccccccccccC
Q 003820 158 LDIYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEKKPLGLLSLLDEEST 237 (793)
Q Consensus 158 LDI~GFE~f~~NsfEQlcINyaNEkLq~~f~~~~f~~eqeeY~~EgI~w~~i~f~dN~~~ldLie~kp~Gil~lLDee~~ 237 (793)
|||||||+|+.|||||||||||||||||.|++-+++.|||||++|||+|++|+|.+|..++||+|.+..|||+||||+|+
T Consensus 380 ldiygfeif~~NSFEQfcINYCNEKLQQlFIel~LKqEQEEY~rEgI~W~~i~YFnN~iIcdLvE~~~~GIlailDe~Cl 459 (1001)
T KOG0164|consen 380 LDIYGFEIFQDNSFEQFCINYCNEKLQQLFIELVLKQEQEEYEREGIEWTHIDYFNNKIICDLVEQPHKGILAILDEACL 459 (1001)
T ss_pred EEeeeEEeecCCcHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcCCCceehhhcCCceeeehhccCccchhhhhhHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC-CCcHHHHHHHHHHcCCCCccccCC---------CCCcEEEecCccccccccchhhhccccccHHHHHHHhhcCCch
Q 003820 238 FPN-GTDLTFANKLKQHLNSNPCFRGER---------DKSFTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCSCHL 307 (793)
Q Consensus 238 ~p~-~tD~~f~~kl~~~~~~~~~~~~~~---------~~~F~I~HyaG~V~Y~v~gfleKN~D~l~~~~~~ll~~S~~~~ 307 (793)
.|+ .||.+|+++|.+.+++|++|.+.. -..|.|.||||+|+|+|.||++||+|.|..|+-.+|..|++++
T Consensus 460 ~~G~vtD~tfL~~l~~~~~~H~Hy~sr~~~~~dksl~~~~Fri~HYAG~V~YsV~gFidKN~D~Lf~dlk~~m~~s~~~~ 539 (1001)
T KOG0164|consen 460 RPGTVTDETFLEKLNQKLKKHPHYTSRKLKQTDKSLGFSDFRITHYAGDVTYSVEGFIDKNNDLLFQDLKRLMYNSKNPL 539 (1001)
T ss_pred CCCccchHHHHHHHHHHhhhCCcchhhhccccccccCccceeEEEeccceEEEEEeeeccCccHHHHHHHHHHHhcCCch
Confidence 985 799999999999999999996531 2589999999999999999999999999999999999999996
Q ss_pred H-HHhhhcccccCCCCccCCCccCCCCCCCCccHHHHHHHHHHHHHHHHhccCCeeeeecCCCCCCCCCccchhHHHHHh
Q 003820 308 P-QIFASNMLSQSNKPVVGPLYKAGGADSQKLSVATKFKGQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQL 386 (793)
Q Consensus 308 ~-~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~f~~~L~~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QL 386 (793)
+ .+|+........ ....++|++++|+.|+..||..|.+-+|+||||||||+.+.|+.||...|.+|+
T Consensus 540 l~~~fpeG~~~~~~------------~tkRP~Tagt~Fk~Sm~~Lv~nL~sKeP~YvRcikPNe~k~~~~fd~e~~~hqv 607 (1001)
T KOG0164|consen 540 LKSLFPEGNPDIAE------------VTKRPPTAGTLFKNSMAALVKNLASKEPNYVRCIKPNEHKQPGQFDEERVRHQV 607 (1001)
T ss_pred HHHhCCCCChhHHh------------hhcCCCcHHHHHHHHHHHHHHHHhhcCCCeEEeeccccccCccccchhhhHHHH
Confidence 5 577632211000 012358999999999999999999999999999999999999999999999999
Q ss_pred hhhChhHHHHHHhcCCCCccChHHHHHHhhccccccCCCC---ChHHHHHHHHHHcCCCCcceeecceeeeeeec-cccc
Q 003820 387 RCCGVLEVVRISRSGFPTRMSHQKFARRYGFLLLESVASQ---DPLSVSVAILHQFNILPEMYQVGYTKLFFRAG-QIGM 462 (793)
Q Consensus 387 r~~gvle~vri~r~Gyp~r~~~~eF~~RY~~L~~~~~~~~---d~~~~~~~il~~~~~~~~~~~vGkTKVFlr~~-~~~~ 462 (793)
+|+|++|.+|++|+||.+|.+|+.|+.||+++++.+||.+ +.++.|..+++..++. +++.+|+||||+|.. .+..
T Consensus 608 ~ylGLleNvrVrrAgfahRq~Y~~FL~RYKmi~~~TWPn~~~g~dkd~v~vL~e~~g~~-~d~a~G~TKIFIRsPrTLF~ 686 (1001)
T KOG0164|consen 608 RYLGLLENVRVRRAGFAHRQPYERFLLRYKMICESTWPNWRGGSDKDGVKVLLEHLGLA-GDVAFGRTKIFIRSPRTLFA 686 (1001)
T ss_pred HHHHHHhhhhhhhcccccccchHHHHHHHHhhCcccCCCCCCCCchhHHHHHHHHhccc-hhhhcCceeEEEecchhHhh
Confidence 9999999999999999999999999999999999999965 5578899999999986 899999999999986 5899
Q ss_pred ccccccccchhh-HhhhhhhcccccchhhcccccchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHh
Q 003820 463 LEDTRNRTLHGI-LRVQSCFRGHQARLCLKELRRGIVALQSFIRGEKIRKEYALVLQRHRAAVVIQRQIKSRVARQKLKN 541 (793)
Q Consensus 463 LE~~R~~~l~aa-~~IQ~~~Rg~~~R~~~~~~~~a~i~IQs~~Rg~~aRr~~~~l~~~~~AAi~IQ~~~R~~~~R~~~~~ 541 (793)
||+.|.+++..+ +.||+.|||+++|.+|++++.++++|+ |||.+.. ..++..||..+|++..++.|.+
T Consensus 687 lEe~r~~~l~~lvtllQK~~RG~~~R~ry~rmka~~~ii~-wyR~~K~----------ks~v~el~~~~rg~k~~r~ygk 755 (1001)
T KOG0164|consen 687 LEEQRAERLPSLVTLLQKAWRGWLARQRYRRMKASATIIR-WYRRYKL----------KSYVQELQRRFRGAKQMRDYGK 755 (1001)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH----------HHHHHHHHHHHHhhhhccccCC
Confidence 999999988765 589999999999999999999999998 8873322 2567788999999999998865
Q ss_pred ----------hhhHHHHHHHHHhhHHHHhhhhhh
Q 003820 542 ----------IKYSSIMIQSVIRGWLVRRCSGDI 565 (793)
Q Consensus 542 ----------~r~aai~IQs~~Rg~~aRr~~~~l 565 (793)
++.+.-.+|..+-.|.+++..+.+
T Consensus 756 ~~~WP~pP~~Lr~~~~~L~~lf~rwra~~~~~~i 789 (1001)
T KOG0164|consen 756 SIRWPAPPLVLREFEELLRELFIRWRAWQILKSI 789 (1001)
T ss_pred CCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 455667777777777777766544
No 5
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=100.00 E-value=6.3e-117 Score=1034.44 Aligned_cols=454 Identities=38% Similarity=0.667 Sum_probs=423.1
Q ss_pred CCccCccccCCCccccCCcccHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhcCeeEEeeC--CCCceeecCchHHH
Q 003820 2 SAKEYKYLRQSSCYSINGVDDAEQFRIVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVID--NENHVEPVADEGLI 79 (793)
Q Consensus 2 ~~~~y~yL~~~~~~~~~~~dD~~~f~~~~~Al~~lg~~~~~~~~if~ilaaILhLGNi~F~~~~--~~~~~~~~~~~~l~ 79 (793)
++.+|+||++++|..++++||+++|+.|+.||++|||+++++..||+|||||||||||+|...+ +.+.+.+.+.+.++
T Consensus 209 ~~~~y~yL~~~~~~~~~~~dD~~~f~~~~~al~~lG~~~~e~~~i~~ilaaILhLGni~F~~~~~~~~~~~~i~~~~~l~ 288 (671)
T cd01381 209 EASDYHYLAQGGCITCEGRDDAKDFADIRSAMKVLMFTDQEIWEIFKLLAAILHIGNLRFEATEVDNLAACEVDDTPNLQ 288 (671)
T ss_pred ChhhceeecCCCCccCCCccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceEEeeccCCCCCceeeCChHHHH
Confidence 4678999999999999999999999999999999999999999999999999999999998753 23568888999999
Q ss_pred HHHHHhCCCHHHHHHHHccceeeecCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCcceeEEee
Q 003820 80 TVAKLIGCDIGELKLALSTRKMRVGNDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILD 159 (793)
Q Consensus 80 ~~a~LLgv~~~~L~~~L~~~~i~~~~e~i~~~lt~~qA~~~rdaLak~LY~rLF~wlV~~IN~~l~~~~~~~~~~IgILD 159 (793)
.||.||||++++|.++||++++.++|+.+.++++++||.++||||||+||++||+|||.+||.+|.++......+|||||
T Consensus 289 ~~a~LLgv~~~~L~~~lt~~~~~~~~e~i~~~~~~~qA~~~rdalak~lY~~lF~wiV~~IN~~l~~~~~~~~~~IgiLD 368 (671)
T cd01381 289 RVAQLLGVPIQDLMDALTSRTIFTRGETVVTPLSREQAVDVRDAFVKGIYGRLFVWIVRKINAAIYKPVQQSRNSIGVLD 368 (671)
T ss_pred HHHHHhCCCHHHHhhhhceEEEEeCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccceEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999865344567999999
Q ss_pred cCCCccCCCCChhHHHHHHhhHHHHHHHHHHhhHHHHHHHhhcCCcccccccCCchhHHHhhhcCCCccccccccccCCC
Q 003820 160 IYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEKKPLGLLSLLDEESTFP 239 (793)
Q Consensus 160 I~GFE~f~~NsfEQlcINyaNEkLq~~f~~~~f~~eqeeY~~EgI~w~~i~f~dN~~~ldLie~kp~Gil~lLDee~~~p 239 (793)
|||||+|+.||||||||||||||||++|++++|+.||++|.+|||+|++|+|.||++|||||+++|.|||++|||||++|
T Consensus 369 IfGFE~f~~NsfEQLcINy~NEkLQ~~f~~~vf~~eq~eY~~EgI~~~~i~f~dN~~~ldLie~kp~Gil~lLDee~~~p 448 (671)
T cd01381 369 IFGFENFDVNSFEQLCINFANENLQQFFVQHIFKLEQEEYNLEHINWQHIEFVDNQDALDLIAIKPLNIMSLIDEESKFP 448 (671)
T ss_pred cCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccCccCcHHHHHHHhcCCCCcceechHhhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHcCCCCccccCC---CCCcEEEecCccccccccchhhhccccccHHHHHHHhhcCCchH-HHhhhcc
Q 003820 240 NGTDLTFANKLKQHLNSNPCFRGER---DKSFTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCSCHLP-QIFASNM 315 (793)
Q Consensus 240 ~~tD~~f~~kl~~~~~~~~~~~~~~---~~~F~I~HyaG~V~Y~v~gfleKN~D~l~~~~~~ll~~S~~~~~-~lf~~~~ 315 (793)
+|||++|++||++.+++|++|..++ +..|+|+||||+|+|+++||++||+|.++++++++|++|+++++ .+|....
T Consensus 449 ~~td~~f~~kl~~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~n~~i~~lf~~~~ 528 (671)
T cd01381 449 KGTDQTMLEKLHSQHGLHSNYLKPKSTQETQFGINHFAGVVFYDTRGFLEKNRDTFSGDLSQLVQSSKNKFLKQIFQADV 528 (671)
T ss_pred CCCHHHHHHHHHHHhcCCCCcccCCCCCCCceEEEEecceEeeccCCHHHhccchhhHHHHHHHHhChHHHHHHHhcccc
Confidence 9999999999999999999997653 46899999999999999999999999999999999999999976 5776433
Q ss_pred cccCCCCccCCCccCCCCCCCCccHHHHHHHHHHHHHHHHhccCCeeeeecCCCCCCCCCccchhHHHHHhhhhChhHHH
Q 003820 316 LSQSNKPVVGPLYKAGGADSQKLSVATKFKGQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVV 395 (793)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~tv~~~f~~~L~~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~v 395 (793)
... .+...+..||+++|+.||+.||++|++|.||||||||||+.+.|+.||..+|++||||+||||+|
T Consensus 529 ~~~------------~~~~~k~~tv~~~fk~qL~~L~~~L~~t~phfIRCIKPN~~k~~~~fd~~~V~~QLr~~Gvle~i 596 (671)
T cd01381 529 EMG------------AETRKKKPTLSSQFRRSLDLLMRTLSSCQPFFIRCIKPNEYKEPMVFDRELCVRQLRYSGMMETI 596 (671)
T ss_pred ccc------------ccccccCCcHHHHHHHHHHHHHHHHhcCCCeEEEEeCcchhhccCccChHHHHHHHHhcchHHHH
Confidence 100 01123468999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCccChHHHHHHhhccccccCCC---CChHHHHHHHHHHcCCCCcceeecceeeeeeecccccccccc
Q 003820 396 RISRSGFPTRMSHQKFARRYGFLLLESVAS---QDPLSVSVAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTR 467 (793)
Q Consensus 396 ri~r~Gyp~r~~~~eF~~RY~~L~~~~~~~---~d~~~~~~~il~~~~~~~~~~~vGkTKVFlr~~~~~~LE~~R 467 (793)
+|+|.|||+|++|.+|+.||++|++...+. .+++..|..+++.+.+++++|++|+||||||.+++..||+.|
T Consensus 597 ri~r~Gyp~r~~~~~F~~rY~~L~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~G~TkVFlr~~~~~~LE~~r 671 (671)
T cd01381 597 RIRRAGYPIRHTFREFVERYRVLVPGVKPAYKQDCLAGLAQRICEAVLLADDDWQLGKTKVFLKDHHDLLLEQER 671 (671)
T ss_pred HHHHcCcCceecHHHHHHHHHHhCcccccccccccHHHHHHHHHHHcCCCcccEEeccceEEECcCHHHHHhhcC
Confidence 999999999999999999999999987652 477889999999999999999999999999999999999875
No 6
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=100.00 E-value=8.8e-117 Score=1037.72 Aligned_cols=465 Identities=45% Similarity=0.760 Sum_probs=423.2
Q ss_pred CCccCccccCCCccccCCcccHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhcCeeEEeeCCCCceeecCchHHHHH
Q 003820 2 SAKEYKYLRQSSCYSINGVDDAEQFRIVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNENHVEPVADEGLITV 81 (793)
Q Consensus 2 ~~~~y~yL~~~~~~~~~~~dD~~~f~~~~~Al~~lg~~~~~~~~if~ilaaILhLGNi~F~~~~~~~~~~~~~~~~l~~~ 81 (793)
++++|+||++++|..++++||+++|+.|+.||++|||+++++..||+|||||||||||+|...++++.+...+.+.++.|
T Consensus 215 ~~~~y~yl~~~~~~~~~~~~d~~~f~~~~~al~~lg~s~~e~~~I~~iLaaILhLGni~F~~~~~~~~~~~~~~~~l~~~ 294 (691)
T cd01380 215 HADKFNYLNQGGAPTIEGVDDAEDFNATVQALTLLGISEEQQMDIFKLLAALLHLGNIEIEATRNDSSSISPKDENLQIA 294 (691)
T ss_pred CHHHCccccCCCCccCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccceeeeccCCccceecCChHHHHHH
Confidence 35789999999999999999999999999999999999999999999999999999999997665543444567799999
Q ss_pred HHHhCCCHHHHHHHHccceeeecCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCC--CCCcceeEEee
Q 003820 82 AKLIGCDIGELKLALSTRKMRVGNDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGK--RRTGRSISILD 159 (793)
Q Consensus 82 a~LLgv~~~~L~~~L~~~~i~~~~e~i~~~lt~~qA~~~rdaLak~LY~rLF~wlV~~IN~~l~~~~--~~~~~~IgILD 159 (793)
|.||||++++|.++|+++++.+++|.+++++|++||.++||+|||+||++||+|||.+||.+|.+.. .....+|||||
T Consensus 295 a~LLgv~~~~L~~~l~~~~~~~~~e~i~~~~~~~qA~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~~~~IgiLD 374 (691)
T cd01380 295 CELLGVDASDLRKWLVKRQIVTRSEKIVKPLTKEQAIVARDALAKHIYSKLFDWIVDVINKSLNTGEVKKKQTSFIGVLD 374 (691)
T ss_pred HHHhCCCHHHHHHHHHhCEEEECCeeEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCcccCCccceEEEEe
Confidence 9999999999999999999999999999999999999999999999999999999999999998753 33567999999
Q ss_pred cCCCccCCCCChhHHHHHHhhHHHHHHHHHHhhHHHHHHHhhcCCcccccccCCchhHHHhhhcCCCccccccccccCCC
Q 003820 160 IYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEKKPLGLLSLLDEESTFP 239 (793)
Q Consensus 160 I~GFE~f~~NsfEQlcINyaNEkLq~~f~~~~f~~eqeeY~~EgI~w~~i~f~dN~~~ldLie~kp~Gil~lLDee~~~p 239 (793)
|||||+|+.|||||||||||||+||++|++++|+.||++|.+|||+|++|+|.||++|||||++ |.|||++|||||++|
T Consensus 375 I~GFE~f~~NsfEQLcINyaNEkLQ~~f~~~iF~~eq~~Y~~EgI~~~~i~f~DN~~~ldLie~-~~Gil~lLdee~~~p 453 (691)
T cd01380 375 IYGFETFEKNSFEQFCINYANEKLQQQFNQHVFKLEQEEYLKEGIEWTFIDFYDNQPCIDLIES-KLGILSLLDEECRLP 453 (691)
T ss_pred cCcccccCCCCHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCCCccccCCCCHHHHHHHhC-CCchHHHhHHhhcCC
Confidence 9999999999999999999999999999999999999999999999999999999999999998 599999999999999
Q ss_pred CCCcHHHHHHHHHHcC--CCCccccCC--CCCcEEEecCccccccccchhhhccccccHHHHHHHhhcCCchH-HHhhhc
Q 003820 240 NGTDLTFANKLKQHLN--SNPCFRGER--DKSFTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCSCHLP-QIFASN 314 (793)
Q Consensus 240 ~~tD~~f~~kl~~~~~--~~~~~~~~~--~~~F~I~HyaG~V~Y~v~gfleKN~D~l~~~~~~ll~~S~~~~~-~lf~~~ 314 (793)
+|||++|++||++.++ +||+|..++ +..|+|+||||+|+|+++||++||+|.++.+++++|++|+++++ .+|...
T Consensus 454 ~~td~~f~~kl~~~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~v~gfleKNrD~l~~~~~~ll~~S~~~~i~~lf~~~ 533 (691)
T cd01380 454 KGSDESWAQKLYNKLPKKKNPHFEKPRFGQTSFTVKHFADDVEYDVDGFLEKNRDTVSDEHLDVLKASKNPFLKEVLDAA 533 (691)
T ss_pred CCChHHHHHHHHHHhcccCCCCccCCCCCCCeeEEEEccCCcccccccHHHhccccccHHHHHHHHhCccHHHHHHhhhh
Confidence 9999999999999998 899998765 46899999999999999999999999999999999999999975 577654
Q ss_pred ccccCCCCc---cCC-CccCCCCCCCCccHHHHHHHHHHHHHHHHhccCCeeeeecCCCCCCCCCccchhHHHHHhhhhC
Q 003820 315 MLSQSNKPV---VGP-LYKAGGADSQKLSVATKFKGQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCG 390 (793)
Q Consensus 315 ~~~~~~~~~---~~~-~~~~~~~~~~~~tv~~~f~~~L~~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~g 390 (793)
....+.... .++ .+..++...+.+||+++|+.||+.||++|++|+||||||||||+.+.|+.||..+|++||||+|
T Consensus 534 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~fk~qL~~L~~~L~~t~phfIRCIKPN~~k~~~~fd~~~V~~QLr~~G 613 (691)
T cd01380 534 ELASSSSSSAKSKPAAKRPPKRAKQHKPTVGSQFKSSLIELMSTLNSTNPHYIRCIKPNDEKKPFKFEPKRVLQQLRACG 613 (691)
T ss_pred cccccccccccccccccccccccccCCCcHHHHHHHHHHHHHHHHhccCCeEEEEeCCCcccCcCccCHHHHHHHHHHhc
Confidence 321111000 000 0111223456789999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhcCCCCccChHHHHHHhhccccccC-CCCChHHHHHHHHHHcCCCCcceeecceeeeeeecccccccccc
Q 003820 391 VLEVVRISRSGFPTRMSHQKFARRYGFLLLESV-ASQDPLSVSVAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTR 467 (793)
Q Consensus 391 vle~vri~r~Gyp~r~~~~eF~~RY~~L~~~~~-~~~d~~~~~~~il~~~~~~~~~~~vGkTKVFlr~~~~~~LE~~R 467 (793)
|||+|||+|.|||+|++|.+|+.||++|++... ...|+++.|+.||+.+.+++++|++|+||||||.+++..||+.|
T Consensus 614 vlE~iri~r~Gyp~R~~~~~F~~ry~~L~~~~~~~~~~~k~~~~~iL~~~~~~~~~~~~G~tkVFlk~~~~~~LE~~R 691 (691)
T cd01380 614 VLETIRISAAGFPSRWTYEEFAQRYRVLVPSKELWKSDPKQLCENILTKVIEDEDKYQFGKTKIFFRAGQVAFLEKLR 691 (691)
T ss_pred hHHHHHHHhccCCccccHHHHHHHHHHhCccccccCCCHHHHHHHHHHHhCCCcccEEecCceEEECcCHHHHHhhcC
Confidence 999999999999999999999999999999876 34589999999999999999999999999999999999999876
No 7
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=100.00 E-value=1e-116 Score=1031.65 Aligned_cols=453 Identities=44% Similarity=0.758 Sum_probs=419.8
Q ss_pred CCccCccccCCCccccCCcccHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhcCeeEEeeCCCCceeecC---chHH
Q 003820 2 SAKEYKYLRQSSCYSINGVDDAEQFRIVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNENHVEPVA---DEGL 78 (793)
Q Consensus 2 ~~~~y~yL~~~~~~~~~~~dD~~~f~~~~~Al~~lg~~~~~~~~if~ilaaILhLGNi~F~~~~~~~~~~~~~---~~~l 78 (793)
++++|+||++++|..++++||+++|+.|+.||+.|||+++++..||+|||||||||||+|...++.+.+.+.+ .+.+
T Consensus 214 ~~~~y~yL~~~~~~~~~~~~D~~~f~~~~~al~~lG~~~~e~~~I~~iLaaILhLGni~F~~~~~~~~~~~~~~~~~~~l 293 (674)
T cd01384 214 DPKEFHYLNQSNCFELDGVDDAEEYLATRRAMDVVGISEEEQDAIFRVVAAILHLGNIEFAKGEEIDSSVLKDEKSEFHL 293 (674)
T ss_pred ChHhCccccCCCCccccccchHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccceeeeccCCCCcccccCcccHHHH
Confidence 5779999999999999999999999999999999999999999999999999999999998765444444433 4789
Q ss_pred HHHHHHhCCCHHHHHHHHccceeeecCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCcceeEEe
Q 003820 79 ITVAKLIGCDIGELKLALSTRKMRVGNDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISIL 158 (793)
Q Consensus 79 ~~~a~LLgv~~~~L~~~L~~~~i~~~~e~i~~~lt~~qA~~~rdaLak~LY~rLF~wlV~~IN~~l~~~~~~~~~~IgIL 158 (793)
..||.||||++++|.++|+++++.++++.++++++++||.++||+|||+||++||+|||.+||.+|.+.. ....+||||
T Consensus 294 ~~~a~LLgv~~~~L~~~L~~~~~~~~~e~i~~~~~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~-~~~~~IgiL 372 (674)
T cd01384 294 KTAAELLMCDEKALEDALCKRVMVTPEEVITKPLDPDSAELSRDALAKTIYSRLFDWLVNKINSSIGQDP-DSKSLIGVL 372 (674)
T ss_pred HHHHHHhCCCHHHHHHHhcccEEEeCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCeEEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999998743 346799999
Q ss_pred ecCCCccCCCCChhHHHHHHhhHHHHHHHHHHhhHHHHHHHhhcCCcccccccCCchhHHHhhhcCCCccccccccccCC
Q 003820 159 DIYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEKKPLGLLSLLDEESTF 238 (793)
Q Consensus 159 DI~GFE~f~~NsfEQlcINyaNEkLq~~f~~~~f~~eqeeY~~EgI~w~~i~f~dN~~~ldLie~kp~Gil~lLDee~~~ 238 (793)
||||||+|+.|||||||||||||+||++|++++|+.||++|.+|||+|+.|+|.||++|||||+++|.|||++|||||++
T Consensus 373 DI~GFE~f~~NsfEQLcINyaNEkLQ~~f~~~if~~eq~eY~~EgI~~~~i~~~DN~~~ldLie~~~~Gil~lLdee~~~ 452 (674)
T cd01384 373 DIYGFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYTKEEIDWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMF 452 (674)
T ss_pred ecccccccCcCCHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccCCChHHHHHHHhcCCccHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcHHHHHHHHHHcCCCCccccCC--CCCcEEEecCccccccccchhhhccccccHHHHHHHhhcCCchH-HHhhhcc
Q 003820 239 PNGTDLTFANKLKQHLNSNPCFRGER--DKSFTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCSCHLP-QIFASNM 315 (793)
Q Consensus 239 p~~tD~~f~~kl~~~~~~~~~~~~~~--~~~F~I~HyaG~V~Y~v~gfleKN~D~l~~~~~~ll~~S~~~~~-~lf~~~~ 315 (793)
|++||.+|++||++++++|++|..++ +..|+|+||||+|+|+++||++||+|.++++++++|++|+++++ .+|+...
T Consensus 453 p~~td~~f~~kl~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~v~gfleKN~D~l~~~~~~ll~~S~n~~i~~lf~~~~ 532 (674)
T cd01384 453 PKSTHETFAQKLYQTFKDHKRFEKPKLSRTAFTIDHYAGDVTYQTDQFLDKNKDYVVAEHQALLNASNCSFVAGLFPPLP 532 (674)
T ss_pred CCCCHHHHHHHHHHHhcCCCCCCCCCCCCCeeEEEEecceeeecCCCHHHhcCCcccHHHHHHHHhCchHHHHHHhcccc
Confidence 99999999999999999999998765 46899999999999999999999999999999999999999976 5775432
Q ss_pred cccCCCCccCCCccCCCCCCCCccHHHHHHHHHHHHHHHHhccCCeeeeecCCCCCCCCCccchhHHHHHhhhhChhHHH
Q 003820 316 LSQSNKPVVGPLYKAGGADSQKLSVATKFKGQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVV 395 (793)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~tv~~~f~~~L~~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~v 395 (793)
... +...+..||+++|+.||+.||++|++|+||||||||||+.++|+.||..+|++||||+||||+|
T Consensus 533 ~~~-------------~~~~k~~tv~~~fk~~L~~L~~~L~~t~~hfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvlE~i 599 (674)
T cd01384 533 EET-------------SKSSKFSSIGSRFKQQLQSLMETLSTTEPHYIRCIKPNNVLKPGIFENENVLQQLRCGGVLEAI 599 (674)
T ss_pred ccc-------------ccccccccHHHHHHHHHHHHHHHHhccCCeEEEEeCCCcccCCCccCHHHHHHHHHHcchHHHH
Confidence 110 1123458999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCccChHHHHHHhhccccccCCC-CChHHHHHHHHHHcCCCCcceeecceeeeeeeccccccccccccc
Q 003820 396 RISRSGFPTRMSHQKFARRYGFLLLESVAS-QDPLSVSVAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTRNRT 470 (793)
Q Consensus 396 ri~r~Gyp~r~~~~eF~~RY~~L~~~~~~~-~d~~~~~~~il~~~~~~~~~~~vGkTKVFlr~~~~~~LE~~R~~~ 470 (793)
||+|.|||+|++|.+|+.||++|++...+. .+.+..|+.||..+++ +.|++|+||||||.+++..||.+|.+.
T Consensus 600 ri~r~Gyp~r~~~~~F~~ry~~L~~~~~~~~~~~~~~~~~il~~~~~--~~~~~GktkVFlr~~~~~~LE~~R~~~ 673 (674)
T cd01384 600 RISCAGYPTRRTFDEFLDRFGILAPEVLKGSSDDKAACKKILDKMGL--KGYQIGKTKVFLRAGQMAELDARRTEV 673 (674)
T ss_pred HHHhcCCCccccHHHHHHHHHHhCcccccCCCcHHHHHHHHHHhCCC--CCEEecCeeEEEcCCHHHHHHHHHHhc
Confidence 999999999999999999999999877653 4788999999998865 589999999999999999999998765
No 8
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=100.00 E-value=4.6e-116 Score=1014.92 Aligned_cols=538 Identities=48% Similarity=0.791 Sum_probs=504.7
Q ss_pred CCccCccccCCCccccCCcccHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhcCeeEEeeCCCCceeecCchHHHHH
Q 003820 2 SAKEYKYLRQSSCYSINGVDDAEQFRIVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNENHVEPVADEGLITV 81 (793)
Q Consensus 2 ~~~~y~yL~~~~~~~~~~~dD~~~f~~~~~Al~~lg~~~~~~~~if~ilaaILhLGNi~F~~~~~~~~~~~~~~~~l~~~ 81 (793)
++..|.||+|++|..++++||+.+|..++.||..+||+.++|+.||++||||||||||+|...++++.+... ++.+..+
T Consensus 218 ~~~~f~yl~q~~~~~i~~v~d~~e~~~t~~A~~~vgi~~~~q~~if~lla~ilhlGni~f~~~~~~~~~~~~-~~~~~~~ 296 (862)
T KOG0160|consen 218 TLRRFSYLNQSACVLISGVSDAEEFLSTTEAMLFVGISESHQELIFRLLAAILHLGNIQFSSGVEETSSSPV-DDHLWTA 296 (862)
T ss_pred ccccceecccccchhhcccccHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhccCceEeeccccccccccc-chHHHHH
Confidence 377899999999999999999999999999999999999999999999999999999999987766444443 4489999
Q ss_pred HHHhCCCHHHHHHHHccceeeecCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCcceeEEeecC
Q 003820 82 AKLIGCDIGELKLALSTRKMRVGNDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIY 161 (793)
Q Consensus 82 a~LLgv~~~~L~~~L~~~~i~~~~e~i~~~lt~~qA~~~rdaLak~LY~rLF~wlV~~IN~~l~~~~~~~~~~IgILDI~ 161 (793)
|.||||+.+.|...|+.+.+.++++.|+++++..+|...||+|||.||++||+|+|..||.+|..+......+|||||||
T Consensus 297 a~Llg~~~~~l~~~L~~r~i~~~~e~i~k~l~~~qa~~~rD~lak~iys~LFdwlV~~in~sL~~~~~~~~~~igVLDiY 376 (862)
T KOG0160|consen 297 AELLGCDEEALEQWLSKRKILTARESIVKPLTLSQAVKRRDALAKQLYSLLFDWLVAKINGSLGANDPKAERFIGVLDIY 376 (862)
T ss_pred HHHhCCCHHHHHHHHHHHHhhcccceeecccCHHHHHHhhhhhHHHHHHHHHHHHHHHhhcccccCCCCccceeeeehcc
Confidence 99999999999999999999999999999999999999999999999999999999999999998766667899999999
Q ss_pred CCccCCCCChhHHHHHHhhHHHHHHHHHHhhHHHHHHHhhcCCcccccccCCchhHHHhhhcCCCccccccccccCCCCC
Q 003820 162 GFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEKKPLGLLSLLDEESTFPNG 241 (793)
Q Consensus 162 GFE~f~~NsfEQlcINyaNEkLq~~f~~~~f~~eqeeY~~EgI~w~~i~f~dN~~~ldLie~kp~Gil~lLDee~~~p~~ 241 (793)
|||.|+.|||||||||||||+|||+||+|+|+.||+||..|+|+|+.|+|.||++|+++|++ |.|+++||||+|++|.+
T Consensus 377 gFEsF~~nsfeQfcINyanEkLqq~fnqHvfk~Eqeey~~e~i~Ws~ief~dNq~~~~lie~-~~Gi~~Llde~c~lp~~ 455 (862)
T KOG0160|consen 377 GFESFEVNSFEQFCINYANEKLQQQFNQHVFKLEQEEYTKEEIDWSGIEFRDNQECLDLIEK-PLGILALLDEECMLPKG 455 (862)
T ss_pred cccccccCcHHHhhhhhHHHHhhHHHHHHHHHHHHHHHHhhccccccccCcCccchhhhhcc-ccchhhccchhccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999 89999999999999999
Q ss_pred CcHHHHHHHHHHcCCCCccccCCC--CCcEEEecCccccccccchhhhccccccHHHHHHHhhcCCchHHHhhhcccccC
Q 003820 242 TDLTFANKLKQHLNSNPCFRGERD--KSFTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCSCHLPQIFASNMLSQS 319 (793)
Q Consensus 242 tD~~f~~kl~~~~~~~~~~~~~~~--~~F~I~HyaG~V~Y~v~gfleKN~D~l~~~~~~ll~~S~~~~~~lf~~~~~~~~ 319 (793)
+|.+|..||.+.+.+|++|.+++. ..|+|.||||+|+|++.|||+||+|++++++++++..|++++...+...+..++
T Consensus 456 t~~~~a~KL~~~~~~~~~f~kpr~~~~~f~v~hyAg~v~y~~~~fL~knrd~v~~el~~ll~~s~~~~~~~~~~~~~~~~ 535 (862)
T KOG0160|consen 456 TDETLAQKLYQTLKRNKRFTKPRLSRTDFRVAHYAGDVTYDTEGFLEKNRDYVSDELIDLLLASDCHFVAGLAPPLRADS 535 (862)
T ss_pred CcchHHHHHHHHhccCCccCCCCCCcCCcccccccCccccchhhhccCCccccCHHHHhhhhhcccchHHHhccchhcch
Confidence 999999999999999999998874 589999999999999999999999999999999999999998765543332221
Q ss_pred CCCccCCCccCCCCCCCCccHHHHHHHHHHHHHHHHhccCCeeeeecCCCCCCCCCccchhHHHHHhhhhChhHHHHHHh
Q 003820 320 NKPVVGPLYKAGGADSQKLSVATKFKGQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISR 399 (793)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~tv~~~f~~~L~~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~vri~r 399 (793)
. +.+++.||+++|+.+|..||.+|++|+||||||||||..+.|..||..+|++|||||||||++||++
T Consensus 536 ~------------~~~~~~tv~s~fk~~l~~Lm~~l~~t~phyircikPn~~~~p~~fe~~~v~~Qlr~~GvLetiRiS~ 603 (862)
T KOG0160|consen 536 S------------AKSKRSTVGSQFKLQLISLMETLNSTPPHYIRCIKPNAEKKPQIFENNLVLQQLRCCGVLETIRISC 603 (862)
T ss_pred h------------hhhhcccHHHHHHHHHHHHHHHhcCCCCCCceeeCcchhcccccccccceeeeccccceehhheecc
Confidence 1 2456799999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCccChHHHHHHhhccccccCCCCChHHHHHHHHHHcCCCCcceeecceeeeeeecccccccccccccchhhH-hhh
Q 003820 400 SGFPTRMSHQKFARRYGFLLLESVASQDPLSVSVAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTRNRTLHGIL-RVQ 478 (793)
Q Consensus 400 ~Gyp~r~~~~eF~~RY~~L~~~~~~~~d~~~~~~~il~~~~~~~~~~~vGkTKVFlr~~~~~~LE~~R~~~l~aa~-~IQ 478 (793)
.|||.|.+|.||+.||++|+| .....|+++.|+.+|+.++++ .|++|+||||++.+++..||..|..++.++. .||
T Consensus 604 ~g~P~r~~~~Ef~~r~~~L~~-~~~~~~~~~~~~~il~~~~~~--~yq~g~tkif~r~gq~~~le~~R~~vl~~~~~~iq 680 (862)
T KOG0160|consen 604 AGFPTRWTFIEFVNRYGILMP-NDSASDDLSLCKVILEKLGLE--LYQIGKTKIFLRAGQIAVLEARRSDVLSAAKVLIQ 680 (862)
T ss_pred ccCCccccHHHHHHHHhhcCc-chhcccchHHHHHHHHHhchh--ceeeeeeeeeeccchhHHHHHHHHHHHhhHHHHHH
Confidence 999999999999999999999 444567799999999999987 9999999999999999999999999997665 699
Q ss_pred hhhcccccchhhcccccchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHhhhhHHHHHHHHHhhHHH
Q 003820 479 SCFRGHQARLCLKELRRGIVALQSFIRGEKIRKEYALVLQRHRAAVVIQRQIKSRVARQKLKNIKYSSIMIQSVIRGWLV 558 (793)
Q Consensus 479 ~~~Rg~~~R~~~~~~~~a~i~IQs~~Rg~~aRr~~~~l~~~~~AAi~IQ~~~R~~~~R~~~~~~r~aai~IQs~~Rg~~a 558 (793)
+.+|+|+.|++|..++++++.||+.+||+++|+ ..+ +..||+.||+.||++..|+.|...+.+++.+|+.+|++++
T Consensus 681 ~~~r~~~~r~~f~~~r~~~~~~Q~~~rG~~~r~--~~~--~~~aai~~q~~~r~~~~r~~y~~~~~~~~~~qs~~r~~~~ 756 (862)
T KOG0160|consen 681 RQIRGYLARKKFLQLRSAVIIIQAYSRGVLARR--ETE--REAAAIGIQKECRSYLNRRRYRALIPASITIQSGVRAMLA 756 (862)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH--hhH--HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999 222 6689999999999999999999999999999999999999
Q ss_pred Hh
Q 003820 559 RR 560 (793)
Q Consensus 559 Rr 560 (793)
|.
T Consensus 757 r~ 758 (862)
T KOG0160|consen 757 RN 758 (862)
T ss_pred cc
Confidence 88
No 9
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=100.00 E-value=1.8e-116 Score=1032.48 Aligned_cols=451 Identities=40% Similarity=0.673 Sum_probs=419.8
Q ss_pred CCccCccccCCCccccCCcccHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhcCeeEEeeCCCCceeecCchHHHHH
Q 003820 2 SAKEYKYLRQSSCYSINGVDDAEQFRIVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNENHVEPVADEGLITV 81 (793)
Q Consensus 2 ~~~~y~yL~~~~~~~~~~~dD~~~f~~~~~Al~~lg~~~~~~~~if~ilaaILhLGNi~F~~~~~~~~~~~~~~~~l~~~ 81 (793)
++++|+||++++|..++++||+++|++|+.||++|||+++++..||+|||||||||||+|...+++ .+.+.+.+.++.|
T Consensus 212 ~~~~y~yL~~~~~~~~~~~~d~~~f~~~~~al~~lG~s~~e~~~i~~ilaaILhLGni~f~~~~~~-~~~~~~~~~l~~~ 290 (674)
T cd01378 212 KPEYYYYLNQSQCYTVDGIDDKKDFKETQNAMKVIGFSEDEQDEIFRIVAAILHLGNVQFAENGDG-AAVISDKDVLDFA 290 (674)
T ss_pred ChhhCeeecCCCccCCCCccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceEEeccCCC-ccccCChHHHHHH
Confidence 357899999999999999999999999999999999999999999999999999999999875543 3678889999999
Q ss_pred HHHhCCCHHHHHHHHccceeeecC----ceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCcceeEE
Q 003820 82 AKLIGCDIGELKLALSTRKMRVGN----DTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISI 157 (793)
Q Consensus 82 a~LLgv~~~~L~~~L~~~~i~~~~----e~i~~~lt~~qA~~~rdaLak~LY~rLF~wlV~~IN~~l~~~~~~~~~~IgI 157 (793)
|.||||++++|.++|+++++.+++ |.+++++|++||.++||+|||+||++||+|||.+||.+|.+.......+|||
T Consensus 291 a~LLgv~~~~L~~~l~~~~~~~~~~~~~e~i~~~~~~~~a~~~rdalak~lY~~lF~wiV~~IN~~l~~~~~~~~~~IgI 370 (674)
T cd01378 291 AYLLGVDPSELEKALTSRTIETGGGGRGEVYDVPLNVEQAAYTRDALAKAIYSRLFDWLVSRINKALQVKSPGKNKVIGV 370 (674)
T ss_pred HHHcCCCHHHHHHHhcccEEEeCCCCCceeEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCcceEEE
Confidence 999999999999999999999998 9999999999999999999999999999999999999999764455679999
Q ss_pred eecCCCccCCCCChhHHHHHHhhHHHHHHHHHHhhHHHHHHHhhcCCcccccccCCchhHHHhhhc-CCCcccccccccc
Q 003820 158 LDIYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEK-KPLGLLSLLDEES 236 (793)
Q Consensus 158 LDI~GFE~f~~NsfEQlcINyaNEkLq~~f~~~~f~~eqeeY~~EgI~w~~i~f~dN~~~ldLie~-kp~Gil~lLDee~ 236 (793)
|||||||+|+.|||||||||||||+||++||+++|+.||++|.+|||+|++|+|.||++|||||++ +|.|||++|||||
T Consensus 371 LDIfGFE~f~~NsfEQLcINyaNEkLQ~~f~~~~F~~eq~~Y~~EgI~~~~i~f~DN~~~ldLie~~~~~Gil~lLdee~ 450 (674)
T cd01378 371 LDIYGFEIFQKNSFEQFCINYVNEKLQQIFIELTLKAEQEEYVREGIKWTPIEYFNNKIVCDLIEGKRPPGIFSILDDVC 450 (674)
T ss_pred EecccccccccccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcCcCChHHHHHHHhcCCCcchHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999 8999999999999
Q ss_pred CCC-CCCcHHHHHHHHHHcCCCCccccCC--CCCcEEEecCccccccccchhhhccccccHHHHHHHhhcCCchH-HHhh
Q 003820 237 TFP-NGTDLTFANKLKQHLNSNPCFRGER--DKSFTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCSCHLP-QIFA 312 (793)
Q Consensus 237 ~~p-~~tD~~f~~kl~~~~~~~~~~~~~~--~~~F~I~HyaG~V~Y~v~gfleKN~D~l~~~~~~ll~~S~~~~~-~lf~ 312 (793)
++| ++||++|++||++++++||++..++ +..|+|+||||+|+|+++||++||+|+++++++++|++|+++++ .+|+
T Consensus 451 ~~p~~~tD~~~~~kl~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKNrD~l~~~~~~ll~~S~n~~i~~lf~ 530 (674)
T cd01378 451 ATPHEGTDQTFLEKLNKKFSSHPHSDHFSSGSDEFRIKHYAGDVTYSVEGFCDKNKDTLFKDLIELMQSSSNPFLRSLFP 530 (674)
T ss_pred cCCCCCChHHHHHHHHHHhccCCCCCCCCCCCCcEEEEEeceeeeecCcCHHHhhcchhhHHHHHHHHhCchHHHHHHhc
Confidence 999 9999999999999999999865543 57999999999999999999999999999999999999999976 5775
Q ss_pred hcccccCCCCccCCCccCCCCCCCCccHHHHHHHHHHHHHHHHhccCCeeeeecCCCCCCCCCccchhHHHHHhhhhChh
Q 003820 313 SNMLSQSNKPVVGPLYKAGGADSQKLSVATKFKGQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVL 392 (793)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~f~~~L~~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvl 392 (793)
...... ...+.+||+++|+.||+.||++|++|+||||||||||+.++|+.||..+|++||||+|||
T Consensus 531 ~~~~~~--------------~~~~~~tv~~~fk~qL~~Lm~~L~~t~phfIRCIKPN~~k~p~~Fd~~~V~~QLr~~GvL 596 (674)
T cd01378 531 EKSDAD--------------SKKRPTTAGFKIKTSANALVETLMKCTPHYIRCIKPNETKSPNDFDESRVLHQVKYLGLL 596 (674)
T ss_pred cccccc--------------ccCCCCcHHHHHHHHHHHHHHHHHccCCeEEEEECCCccCCchhcCHHHHHHHHHhcChH
Confidence 321100 012357999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCccChHHHHHHhhccccccCC--CCChHHHHHHHHHHcCCCCcceeecceeeeeeec-ccccccccc
Q 003820 393 EVVRISRSGFPTRMSHQKFARRYGFLLLESVA--SQDPLSVSVAILHQFNILPEMYQVGYTKLFFRAG-QIGMLEDTR 467 (793)
Q Consensus 393 e~vri~r~Gyp~r~~~~eF~~RY~~L~~~~~~--~~d~~~~~~~il~~~~~~~~~~~vGkTKVFlr~~-~~~~LE~~R 467 (793)
|+|+|+|.|||+|++|.+|+.||++|++...+ ..|+++.|+.||..+++++++|++|+||||||.+ ++..||++|
T Consensus 597 E~iri~r~Gyp~R~~~~~F~~rY~~L~~~~~~~~~~~~k~~~~~iL~~~~~~~~~~~~GkTkVFlr~~~~l~~le~~R 674 (674)
T cd01378 597 ENVRVRRAGFAYRQTFDKFLQRYKLLSPKTWPTWPGDAKSGVEVILKDLNIDPEEYQMGKTKIFIRNPETLFALEEMR 674 (674)
T ss_pred HHHHHHhcCCCccccHHHHHHHHHHhCcccccccCCCHHHHHHHHHHHcCCCcccEEecCceEEEeCchhHHHHHhcC
Confidence 99999999999999999999999999987643 3589999999999999999999999999999997 699999876
No 10
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=100.00 E-value=6.1e-116 Score=1030.86 Aligned_cols=460 Identities=42% Similarity=0.689 Sum_probs=421.2
Q ss_pred CccCccccCCCccccCCcccHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhcCeeEEeeCCCCceeecCchHHHHHH
Q 003820 3 AKEYKYLRQSSCYSINGVDDAEQFRIVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNENHVEPVADEGLITVA 82 (793)
Q Consensus 3 ~~~y~yL~~~~~~~~~~~dD~~~f~~~~~Al~~lg~~~~~~~~if~ilaaILhLGNi~F~~~~~~~~~~~~~~~~l~~~a 82 (793)
+.+|+||++++| .++++||+++|++|+.||+.|||+++++..||+|||||||||||+|...++++.+.+.+.+.+..||
T Consensus 226 ~~~y~yL~~~~~-~~~~~~d~~~f~~~~~al~~lG~~~~e~~~i~~iLaaILhLGni~F~~~~~~~~~~~~~~~~l~~~a 304 (693)
T cd01377 226 PNDYRYLSQGEL-TIPGVDDAEEFKLTDEAFDILGFSDEEKNSIFKIVAAILHLGNIKFKQRQREEQAELDGTEEADKAA 304 (693)
T ss_pred hhcCeeeCCCCc-cCCCCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceEEEecCCCCccccCChHHHHHHH
Confidence 479999999875 5889999999999999999999999999999999999999999999987666778889999999999
Q ss_pred HHhCCCHHHHHHHHccceeeecCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCcceeEEeecCC
Q 003820 83 KLIGCDIGELKLALSTRKMRVGNDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYG 162 (793)
Q Consensus 83 ~LLgv~~~~L~~~L~~~~i~~~~e~i~~~lt~~qA~~~rdaLak~LY~rLF~wlV~~IN~~l~~~~~~~~~~IgILDI~G 162 (793)
.||||++++|.++|+++++.++++.+.+++|++||.++||+|||+||++||+|||.+||.+|.+. .....+||||||||
T Consensus 305 ~LLgv~~~~L~~~l~~~~~~~~~e~i~~~~~~~~A~~~rDalak~lY~~LF~wiV~~IN~~l~~~-~~~~~~IgiLDIfG 383 (693)
T cd01377 305 HLLGVNSADLLKALLHPRIKVGREWVTKGQNVEQVSFSVGALAKALYERLFLWLVKRINKTLDTK-QQRAYFIGVLDIAG 383 (693)
T ss_pred HHhCCCHHHHHHHhcceEEEECCeeEeeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCCCceEEEEeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999875 34567999999999
Q ss_pred CccCCCCChhHHHHHHhhHHHHHHHHHHhhHHHHHHHhhcCCcccccccC-CchhHHHhhhcCCCccccccccccCCCCC
Q 003820 163 FESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFE-DNKDCLNLFEKKPLGLLSLLDEESTFPNG 241 (793)
Q Consensus 163 FE~f~~NsfEQlcINyaNEkLq~~f~~~~f~~eqeeY~~EgI~w~~i~f~-dN~~~ldLie~kp~Gil~lLDee~~~p~~ 241 (793)
||+|+.|||||||||||||+||++|++++|+.||++|.+|||+|+.|+|. ||++|||||+++|.|||++|||||++|++
T Consensus 384 FE~f~~NsfEQLcINyaNEkLQ~~f~~~vf~~eq~~Y~~EgI~~~~i~~~~dn~~~ldLie~~~~Gil~lLdee~~~~~~ 463 (693)
T cd01377 384 FEIFDFNSFEQLCINYTNEKLQQFFNHHMFVLEQEEYQREGIEWTFIDFGLDLQPTIDLIEKNPMGILSLLDEECVFPKA 463 (693)
T ss_pred ccccCCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccCCCcHHHHHHHhcCCCchHhhhhHHhcCCCC
Confidence 99999999999999999999999999999999999999999999999995 99999999999999999999999999999
Q ss_pred CcHHHHHHHHHHcCCCCcccc--C--CCCCcEEEecCccccccccchhhhccccccHHHHHHHhhcCCchH-HHhhhccc
Q 003820 242 TDLTFANKLKQHLNSNPCFRG--E--RDKSFTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCSCHLP-QIFASNML 316 (793)
Q Consensus 242 tD~~f~~kl~~~~~~~~~~~~--~--~~~~F~I~HyaG~V~Y~v~gfleKN~D~l~~~~~~ll~~S~~~~~-~lf~~~~~ 316 (793)
||.+|++||++.+.+|++|.. + .+..|+|+||||+|+|+++||++||+|.++++++++|++|+++++ .+|.....
T Consensus 464 tD~~~~~kl~~~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~~~~i~~lf~~~~~ 543 (693)
T cd01377 464 TDKTFVEKLYDNHLGKSKFKKPKKGKAKAHFSLVHYAGTVDYNIDGWLEKNKDPLNDNVVGLLKKSSDKLVAELFKDYAE 543 (693)
T ss_pred CHHHHHHHHHHHhcCCCcccccCCCCCCCcEEEEeeceeEeeccccHHHhccccccHHHHHHHHhCchHHHHHHhhhhcc
Confidence 999999999999999998732 2 246899999999999999999999999999999999999999976 57765432
Q ss_pred ccCCCCccCCCccCCCCCCCCccHHHHHHHHHHHHHHHHhccCCeeeeecCCCCCCCCCccchhHHHHHhhhhChhHHHH
Q 003820 317 SQSNKPVVGPLYKAGGADSQKLSVATKFKGQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVR 396 (793)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~tv~~~f~~~L~~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~vr 396 (793)
..+. ..++.. .+....+.+||+++|+.||+.||++|++|+||||||||||+.+.|+.||..+|++||||+||||+||
T Consensus 544 ~~~~--~~~~~~-~~~~~~~~~tv~~~F~~qL~~L~~~L~~t~~hfIRCIKPN~~k~p~~Fd~~~V~~QLr~~GvlEtvr 620 (693)
T cd01377 544 ASGD--GGGGGG-KKKKGGSFRTVSQLYKEQLNKLMTTLRSTNPHFVRCIIPNEEKKPGKLDAHLVLDQLRCNGVLEGIR 620 (693)
T ss_pred cccc--cccccC-CCCcCCccccHHHHHHHHHHHHHHHHhccCCeEEEEeCcCccCCCCccCHHHHHHHHHhcchHHHHH
Confidence 1110 001111 1111234589999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCccChHHHHHHhhccccccCC--CCChHHHHHHHHHHcCCCCcceeecceeeeeeecccccccccc
Q 003820 397 ISRSGFPTRMSHQKFARRYGFLLLESVA--SQDPLSVSVAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTR 467 (793)
Q Consensus 397 i~r~Gyp~r~~~~eF~~RY~~L~~~~~~--~~d~~~~~~~il~~~~~~~~~~~vGkTKVFlr~~~~~~LE~~R 467 (793)
|+|.|||+|++|.+|+.||++|++..++ ..|+++.|+.||+.+++++++|++|+||||||.+++..||.+|
T Consensus 621 irr~Gyp~R~~f~~F~~rY~~L~~~~~~~~~~d~k~~~~~iL~~~~~~~~~~~~G~TKVFlk~~~~~~LE~~R 693 (693)
T cd01377 621 ICRKGFPNRILYAEFRQRYEILAPNAIPKGFMDSKKASEKILKSLELDPEQYRFGHTKVFFRAGVLAHLEEMR 693 (693)
T ss_pred HHHcCCCccccHHHHHHHHHHhCcccccccCCCHHHHHHHHHHhcCCCcccEEecCCeEeECccHHHHHhhcC
Confidence 9999999999999999999999998754 3588999999999999999999999999999999999999876
No 11
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=100.00 E-value=1e-115 Score=1025.10 Aligned_cols=462 Identities=38% Similarity=0.663 Sum_probs=419.1
Q ss_pred CCccCccccCCCccccCCcccHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhcCeeEEeeCC--CCceeecCchHHH
Q 003820 2 SAKEYKYLRQSSCYSINGVDDAEQFRIVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDN--ENHVEPVADEGLI 79 (793)
Q Consensus 2 ~~~~y~yL~~~~~~~~~~~dD~~~f~~~~~Al~~lg~~~~~~~~if~ilaaILhLGNi~F~~~~~--~~~~~~~~~~~l~ 79 (793)
++++|+||++++|..+++++|+++|+.|+.||++|||+++++..||+|||||||||||+|...++ .+.+.+.+++.+.
T Consensus 210 ~~~~y~yL~~~~~~~~~~~~d~~~f~~~~~al~~lg~~~~e~~~i~~iLaaILhLGni~F~~~~~~~~~~~~~~~~~~l~ 289 (677)
T cd01387 210 EAETYYYLNQGGNCEIAGKSDADDFRRLLAAMEVLGFSSEDQDSIFRILASILHLGNVYFEKRETDAQEVASVVSAREIQ 289 (677)
T ss_pred CHHhCchhcCCCcccCCCcCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcCeEEeeccCCCCcccccCCHHHHH
Confidence 46789999999998899999999999999999999999999999999999999999999987542 2347788889999
Q ss_pred HHHHHhCCCHHHHHHHHccceeeecCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCcceeEEee
Q 003820 80 TVAKLIGCDIGELKLALSTRKMRVGNDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILD 159 (793)
Q Consensus 80 ~~a~LLgv~~~~L~~~L~~~~i~~~~e~i~~~lt~~qA~~~rdaLak~LY~rLF~wlV~~IN~~l~~~~~~~~~~IgILD 159 (793)
.||.||||++++|.++||++++.+++|.+.++++++||.++||+|||+||++||+|||.+||.+|.+. ....+|||||
T Consensus 290 ~~a~LLgv~~~~L~~~lt~~~~~~~~e~i~~~~~~~~a~~~rdalak~lY~~lF~wiV~~iN~~l~~~--~~~~~IgILD 367 (677)
T cd01387 290 AVAELLQISPEGLQKAITFKVTETRREKIFTPLTVESAVDARDAIAKVLYALLFNWLITRVNALVSPT--QDTLSIAILD 367 (677)
T ss_pred HHHHHhCCCHHHHHHHhccCeEEeCCceEeccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CCCceEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999863 3457999999
Q ss_pred cCCCccCCCCChhHHHHHHhhHHHHHHHHHHhhHHHHHHHhhcCCcccccccCCchhHHHhhhcCCCccccccccccCCC
Q 003820 160 IYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEKKPLGLLSLLDEESTFP 239 (793)
Q Consensus 160 I~GFE~f~~NsfEQlcINyaNEkLq~~f~~~~f~~eqeeY~~EgI~w~~i~f~dN~~~ldLie~kp~Gil~lLDee~~~p 239 (793)
|||||+|+.|||||||||||||+||++||+++|+.||++|.+|||+|++|+|.||++|||||+++|.|||+||||||++|
T Consensus 368 IfGFE~f~~NsfEQLcINyaNEkLQ~~f~~~vF~~eq~eY~~EgI~~~~i~f~dN~~~ldLi~~kp~Gil~lLdee~~~p 447 (677)
T cd01387 368 IYGFEDLSFNSFEQLCINYANENLQYLFNKIVFQEEQEEYIREQLDWTEIAFADNQPVINLISLKPYGILRILDDQCCFP 447 (677)
T ss_pred cCccccCCCCCHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCcCChHHHHHHHhcCCCchHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHcCCCCccccCC--CCCcEEEecCccccccccchhhhccccccHHHHHHHhhcCCchHH-Hhhhccc
Q 003820 240 NGTDLTFANKLKQHLNSNPCFRGER--DKSFTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCSCHLPQ-IFASNML 316 (793)
Q Consensus 240 ~~tD~~f~~kl~~~~~~~~~~~~~~--~~~F~I~HyaG~V~Y~v~gfleKN~D~l~~~~~~ll~~S~~~~~~-lf~~~~~ 316 (793)
++||.+|++|++..+++|++|..++ ...|+|+||||+|+|+++||++||+|.++++++++|.+|++++++ +|+....
T Consensus 448 ~~td~~~~~kl~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~~~~i~~lf~~~~~ 527 (677)
T cd01387 448 QATDHTFLQKCHYHHGANPLYSKPKMPLPEFTIKHYAGKVTYQVHKFLDKNHDQVRQDVLDLFVSSRTRVVAHLFSSHAA 527 (677)
T ss_pred CCchHHHHHHHHHhccCCccccCCCCCCCeeEEEEeCceeeecCCChHHhccchhhHHHHHHHHhCCcHHHHHHHhhhhc
Confidence 9999999999999999999998765 468999999999999999999999999999999999999999764 6754322
Q ss_pred ccCCCCccCCCccCCCCCCCCccHHHHHHHHHHHHHHHHhccCCeeeeecCCCCCCCCCccchhHHHHHhhhhChhHHHH
Q 003820 317 SQSNKPVVGPLYKAGGADSQKLSVATKFKGQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVR 396 (793)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~tv~~~f~~~L~~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~vr 396 (793)
..+.++ .+...+++...+.+||+++|+.||+.||+.|++|+||||||||||+.+.|+.||..+|++||||+||||+|+
T Consensus 528 ~~~~~~--~~~~s~~~~~~~~~tv~~~f~~sL~~L~~~l~~t~phfIRCIKPN~~k~~~~Fd~~~V~~QLr~~GvlE~vr 605 (677)
T cd01387 528 QRAPKR--LGKSSSGTRLYKAHTVAAKFQQSLLDLVEKMERCNPLFVRCLKPNHKKEPGLFEPDVVMAQLRYSGVLETVR 605 (677)
T ss_pred cccccc--ccCCCccccccCCCcHHHHHHHHHHHHHHHHhcCCCeEEEEECCCCcCCccccChHHHHHHHHHhchHHHHH
Confidence 111111 001111112335689999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCccChHHHHHHhhccccccCCCCChHHH-HHHHHHHcCCCCcceeecceeeeeeecccccccccc
Q 003820 397 ISRSGFPTRMSHQKFARRYGFLLLESVASQDPLSV-SVAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTR 467 (793)
Q Consensus 397 i~r~Gyp~r~~~~eF~~RY~~L~~~~~~~~d~~~~-~~~il~~~~~~~~~~~vGkTKVFlr~~~~~~LE~~R 467 (793)
|+|.|||+|++|.+|+.||++|++......++.+. +..+++.+++++++|+||+||||||.+++..||.+|
T Consensus 606 i~r~Gyp~r~~~~~F~~rY~~L~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~iG~TkVFlk~~~~~~LE~~r 677 (677)
T cd01387 606 IRKEGFPVRLPFQHFIDRYRCLVALKLARPAPGDMCVSELSRLCGVEPPMYRVGASKLFLKEHLHQLLESMR 677 (677)
T ss_pred HHHccCCccccHHHHHHHHHHhCcccccCCCcHHHHHHHHHHHcCCCcccEEecceeEEEcCCHHHHHHhcC
Confidence 99999999999999999999999976544444444 467889999999999999999999999999999876
No 12
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=100.00 E-value=1e-114 Score=1018.83 Aligned_cols=460 Identities=37% Similarity=0.628 Sum_probs=417.9
Q ss_pred CCccCccccCCCccccCCcccHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhcCeeEEeeC---CCCceeecCchHH
Q 003820 2 SAKEYKYLRQSSCYSINGVDDAEQFRIVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVID---NENHVEPVADEGL 78 (793)
Q Consensus 2 ~~~~y~yL~~~~~~~~~~~dD~~~f~~~~~Al~~lg~~~~~~~~if~ilaaILhLGNi~F~~~~---~~~~~~~~~~~~l 78 (793)
++.+|+||++++|...+++||+.+|..|+.||++|||+++++..||+|||||||||||+|...+ .++.+.+.+.+.+
T Consensus 220 ~~~~y~yL~~~~~~~~~~~dd~~~f~~~~~al~~lG~~~~~~~~i~~iLaaILhLGni~F~~~~~~~~~~~~~~~~~~~l 299 (692)
T cd01385 220 KQPDYFYLNQHNLKIEDGEDEKHEFERLKQAMEMVGFLAATQKQIFAVLSAVLLLGNVTYKKRATYHRDESLEVGNPEVV 299 (692)
T ss_pred ChhcCCeeCCCCCccCCCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCceeeecccCCCCCceecCCHHHH
Confidence 3568999999988877899999999999999999999999999999999999999999998753 2456778899999
Q ss_pred HHHHHHhCCCHHHHHHHHccceeeecCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCC--CCcceeE
Q 003820 79 ITVAKLIGCDIGELKLALSTRKMRVGNDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKR--RTGRSIS 156 (793)
Q Consensus 79 ~~~a~LLgv~~~~L~~~L~~~~i~~~~e~i~~~lt~~qA~~~rdaLak~LY~rLF~wlV~~IN~~l~~~~~--~~~~~Ig 156 (793)
..||.||||++++|.++||++++.++||.++++++++||.++||+|||+||++||+|||.+||.+|.+... ....+||
T Consensus 300 ~~~a~LLgv~~~~L~~~l~~~~~~~~~e~i~~~~~~~qa~~~rdalak~lY~~LF~wiV~~IN~~l~~~~~~~~~~~~Ig 379 (692)
T cd01385 300 DLLSQLLKVKRETLMEALTKKRTVTVNETLILPYSLSEAITARDAMAKCLYSALFDWIVLRINHALLNKDDVAVSGLSIG 379 (692)
T ss_pred HHHHHHhCCCHHHHHHHhccCeEEeCCCeEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999987542 2457999
Q ss_pred EeecCCCccCCC-CChhHHHHHHhhHHHHHHHHHHhhHHHHHHHhhcCCcccccccCCchhHHHhhhcCCCccccccccc
Q 003820 157 ILDIYGFESFDR-NSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEKKPLGLLSLLDEE 235 (793)
Q Consensus 157 ILDI~GFE~f~~-NsfEQlcINyaNEkLq~~f~~~~f~~eqeeY~~EgI~w~~i~f~dN~~~ldLie~kp~Gil~lLDee 235 (793)
||||||||+|+. |||||||||||||+||++|++++|+.||++|.+|||+|++|+|.||++|||||+++|.|||++||||
T Consensus 380 iLDI~GFE~f~~~NsfEQLcINyaNEkLQ~~f~~~vf~~eq~~Y~~EgI~~~~i~f~dN~~~ldLie~k~~Gil~lLdee 459 (692)
T cd01385 380 VLDIFGFEDFGRCNSFEQLCINYANEQLQYYFNQHIFKLEQEEYQGEGITWTNIEYTDNVGCIQLFSKKPTGLLYLLDEE 459 (692)
T ss_pred EEecCccccCCCCCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCcHHHHHHHhcCCccHHHHhHHH
Confidence 999999999999 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCcHHHHHHHHHHcCCCCccccCC--CCCcEEEecCccccccccchhhhccccccHHHHHHHhhcCCchH-HHhh
Q 003820 236 STFPNGTDLTFANKLKQHLNSNPCFRGER--DKSFTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCSCHLP-QIFA 312 (793)
Q Consensus 236 ~~~p~~tD~~f~~kl~~~~~~~~~~~~~~--~~~F~I~HyaG~V~Y~v~gfleKN~D~l~~~~~~ll~~S~~~~~-~lf~ 312 (793)
|++|++||.+|++|+++++++|++|..++ ...|+|+||||+|+|+++||++||+|.|+++++++|++|+++++ .+|.
T Consensus 460 ~~~p~~td~~~l~kl~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~n~~i~~lf~ 539 (692)
T cd01385 460 SNFPHATSQTLLAKFNQQHKDNKYYEGPQVKEPAFIIQHYAGKVKYQIKDFREKNMDLMRQDIVALLKGSDSSYVRELIG 539 (692)
T ss_pred hcCCCCCHHHHHHHHHHHhCCCCCccCCCCCCCeEEEEEecceeeecCCCHHHhccccccHHHHHHHHhCccHHHHHHhc
Confidence 99999999999999999999999997764 56899999999999999999999999999999999999999976 5775
Q ss_pred hcccccCCCCccCCCccCCCCCCCCccHHHHHHHHHHHHHHHHhccCCeeeeecCCCCCCCCCccchhHHHHHhhhhChh
Q 003820 313 SNMLSQSNKPVVGPLYKAGGADSQKLSVATKFKGQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVL 392 (793)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~f~~~L~~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvl 392 (793)
....... . .+..++.......+||+++|+.||+.||+.|++|.||||||||||+.+.|+.||..+|++||||+||+
T Consensus 540 ~~~~~~~-~---~~~~~~~~~~~~~~tV~~~f~~~L~~L~~~L~~t~~hfIRCIKPN~~k~p~~Fd~~~V~~QLr~~Gvl 615 (692)
T cd01385 540 MDPVAVF-R---WAVLRAAFRAMAAPSVSAQFQTSLNKLMETLGKAEPFFIRCIKSNAEKIENCFDDELVLRQLRYTGML 615 (692)
T ss_pred cCccccc-c---cccccccccCccCCcHHHHHHHHHHHHHHHHhccCCeEEEEeCCCCccCcCccCHHHHHHHHHhhchH
Confidence 3221100 0 00011111122347999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCccChHHHHHHhhccccccCCCCChHHHHHHHHHHcCCCCcceeecceeeeeeecccccccccc
Q 003820 393 EVVRISRSGFPTRMSHQKFARRYGFLLLESVASQDPLSVSVAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTR 467 (793)
Q Consensus 393 e~vri~r~Gyp~r~~~~eF~~RY~~L~~~~~~~~d~~~~~~~il~~~~~~~~~~~vGkTKVFlr~~~~~~LE~~R 467 (793)
|+|+|+|.|||+|++|.+|+.||++|+|.... ..++.|+.||+.+++++++|+||+||||||.+++..||+..
T Consensus 616 E~irirr~Gyp~R~~~~~F~~rY~~L~~~~~~--~~~~~~~~il~~~~~~~~~~~iGkTkVFlr~~~~~~Le~~~ 688 (692)
T cd01385 616 ETVRIRRAGYSVRYTYQDFTQQYRILLPKGAQ--SCREDISTLLSKMKIDKRNYQIGKTKIFMRETEKQALDETL 688 (692)
T ss_pred HHHHHHhccCCccccHHHHHHHHHHhCccccc--chHHHHHHHHHhcCCCcccEEeeCceEEEcccHHHHHHHHH
Confidence 99999999999999999999999999987542 34567999999999999999999999999999999998763
No 13
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=100.00 E-value=1.4e-114 Score=1021.28 Aligned_cols=456 Identities=34% Similarity=0.585 Sum_probs=413.8
Q ss_pred CCccCccccCCC--------------------------ccccCCcccHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 003820 2 SAKEYKYLRQSS--------------------------CYSINGVDDAEQFRIVVEALDIVHVSKEDQESVFAMLAAVLW 55 (793)
Q Consensus 2 ~~~~y~yL~~~~--------------------------~~~~~~~dD~~~f~~~~~Al~~lg~~~~~~~~if~ilaaILh 55 (793)
++++|+||++|. |..++++||+.+|+.|+.||++|||+++++..||+|||||||
T Consensus 214 ~~~~y~yL~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~dD~~~f~~~~~Al~~lg~s~~e~~~i~~iLaaILh 293 (717)
T cd01382 214 SPDDFRYLNRGCTRYFANKETDKQILQNRKSPEHLKKGALKDPLLDDYGDFQRMCVALKKIGLDDTEKLDLFRVVAGVLH 293 (717)
T ss_pred ChhhCeeecCCcccccccccccccccccccccccccccccCCCCCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Confidence 478899999752 334678999999999999999999999999999999999999
Q ss_pred hcCeeEEeeCCC-Ccee--ecCchHHHHHHHHhCCCHHHHHHHHccceee-----ecCceEEecCCHHHHHHHHHHHHHH
Q 003820 56 LGNVSFTVIDNE-NHVE--PVADEGLITVAKLIGCDIGELKLALSTRKMR-----VGNDTIVQNLTLSQATDTRDALAKS 127 (793)
Q Consensus 56 LGNi~F~~~~~~-~~~~--~~~~~~l~~~a~LLgv~~~~L~~~L~~~~i~-----~~~e~i~~~lt~~qA~~~rdaLak~ 127 (793)
||||+|...+++ +.+. ..+.+.+..||.||||++++|.++|+++++. ++|+.+.++++++||.++||+|||+
T Consensus 294 LGni~F~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~r~~~~~~g~~~~~~i~~~l~~~qA~~~rdalak~ 373 (717)
T cd01382 294 LGNIDFEEAGSTSGGCNVKNQSEQSLEYCAELLGLDQDDLRVSLTTRVMLTTAGGAKGTVIKVPLKVEQANNARDALAKA 373 (717)
T ss_pred cCceeEeccCCCCCcceecCCCHHHHHHHHHHcCCCHHHHHHHHhheEEecccccCCCceEEecCCHHHHHHHHHHHHHH
Confidence 999999875432 2233 3456899999999999999999999999988 7889999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhccCCCCCcceeEEeecCCCccCCCCChhHHHHHHhhHHHHHHHHHHhhHHHHHHHhhcCCccc
Q 003820 128 IYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWA 207 (793)
Q Consensus 128 LY~rLF~wlV~~IN~~l~~~~~~~~~~IgILDI~GFE~f~~NsfEQlcINyaNEkLq~~f~~~~f~~eqeeY~~EgI~w~ 207 (793)
||++||+|||.+||.+|.... ...+||||||||||+|+.||||||||||||||||++|++++|+.||++|.+|||+|+
T Consensus 374 lY~~LF~wiV~~IN~~l~~~~--~~~~IgiLDIfGFE~f~~NsfEQLcINyaNEkLQ~~f~~~if~~Eq~~Y~~EgI~~~ 451 (717)
T cd01382 374 VYSHLFDHVVSRVNQCFPFET--SSNFIGVLDIAGFEYFEHNSFEQFCINYCNEKLQQFFNERILKEEQELYQREGLGVN 451 (717)
T ss_pred HHHHHHHHHHHHHHHhcCCCC--CCcEEEEEeccccccCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 999999999999999997643 457999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCchhHHHhhhcCCCccccccccccCCCCCCcHHHHHHHHHHcCCCCccccCC------------CCCcEEEecCc
Q 003820 208 KVDFEDNKDCLNLFEKKPLGLLSLLDEESTFPNGTDLTFANKLKQHLNSNPCFRGER------------DKSFTVSHYAG 275 (793)
Q Consensus 208 ~i~f~dN~~~ldLie~kp~Gil~lLDee~~~p~~tD~~f~~kl~~~~~~~~~~~~~~------------~~~F~I~HyaG 275 (793)
+|+|.||++|||||+++|.|||++|||||++|++||.+|++||++.+++|++|..++ +..|+|+||||
T Consensus 452 ~i~~~DN~~~ldLie~k~~Gil~lLDee~~~p~~tD~~f~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~I~HyAG 531 (717)
T cd01382 452 EVHYVDNQDCIDLIEAKLNGILDILDEENRLPQPSDQHFTSVVHQKHKDHFRLTIPRKSKLAVHRNLRDDEGFIIRHFAG 531 (717)
T ss_pred cccccccHHHHHHHhcCCccHHHHhHHHhcCCCCCHHHHHHHHHHHhcCCcCccCCCccccccccccCCCCCEEEEecce
Confidence 999999999999999999999999999999999999999999999999988875442 24799999999
Q ss_pred cccccccchhhhccccccHHHHHHHhhcCCchH-HHhhhcccccCCCCccCCCccCCCCCCCCccHHHHHHHHHHHHHHH
Q 003820 276 EVIYDTTGFLEKNRDLLHLDSIELLSSCSCHLP-QIFASNMLSQSNKPVVGPLYKAGGADSQKLSVATKFKGQLFQLMQR 354 (793)
Q Consensus 276 ~V~Y~v~gfleKN~D~l~~~~~~ll~~S~~~~~-~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~f~~~L~~Lm~~ 354 (793)
+|+|+++||++||+|.|+.+++++|++|+++++ .+|..........+ .....+..||+++|+.||+.||++
T Consensus 532 ~V~Y~v~gfleKNkD~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~~~~--------~~~k~~~~tv~~~fk~qL~~Lm~~ 603 (717)
T cd01382 532 AVCYETTQFVEKNNDALHMSLESLICESKDKFLRSLFESSTNNNDTKQ--------KAGKLSFISVGNKFKTQLNLLLEK 603 (717)
T ss_pred eEeecCCChHHhcCccccHHHHHHHHhCchHHHHHHhccccccccccc--------cccCccCccHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999976 57764331110000 001234579999999999999999
Q ss_pred HhccCCeeeeecCCCCCCCCCccchhHHHHHhhhhChhHHHHHHhcCCCCccChHHHHHHhhccccccCCCCChHHHHHH
Q 003820 355 LESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFLLLESVASQDPLSVSVA 434 (793)
Q Consensus 355 L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~eF~~RY~~L~~~~~~~~d~~~~~~~ 434 (793)
|++|+||||||||||+.+.|+.||..+|++||||+||||+|+|+|.|||+|++|.+|+.||+.|+|......|++..|+.
T Consensus 604 L~~t~~hfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvLE~vri~r~Gyp~R~~f~~F~~ry~~l~~~~~~~~~~~~~~~~ 683 (717)
T cd01382 604 LRSTGSSFIRCIKPNLKMVSHQFEGAQILSQLQCSGMVSVLDLMQGGFPSRASFHELYNMYKKYMPPKLVRLDPRLFCKA 683 (717)
T ss_pred HhccCCeeeeeeCCCcccCCCCCChHHHHHHHHhcchHHHHHHHHccCchhhhHHHHHHHHHHhCCcccCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999887767789999999
Q ss_pred HHHHcCCCCcceeecceeeeeeecccccccccc
Q 003820 435 ILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTR 467 (793)
Q Consensus 435 il~~~~~~~~~~~vGkTKVFlr~~~~~~LE~~R 467 (793)
||+.+++++++|++|+||||||.+++..||.+.
T Consensus 684 iL~~~~~~~~~~~~GkTKVFlr~g~~~~le~~~ 716 (717)
T cd01382 684 LFKALGLNENDYKFGLTKVFFRPGKFAEFDQIM 716 (717)
T ss_pred HHHHcCCCcccEEecceeEEecccHHHHHHHHh
Confidence 999999999999999999999999999998753
No 14
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=100.00 E-value=8.6e-113 Score=1005.97 Aligned_cols=453 Identities=49% Similarity=0.821 Sum_probs=422.3
Q ss_pred CCccCccccCCCccccCCcccHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhcCeeEEeeCCCCc-eeecCchHHHH
Q 003820 2 SAKEYKYLRQSSCYSINGVDDAEQFRIVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNENH-VEPVADEGLIT 80 (793)
Q Consensus 2 ~~~~y~yL~~~~~~~~~~~dD~~~f~~~~~Al~~lg~~~~~~~~if~ilaaILhLGNi~F~~~~~~~~-~~~~~~~~l~~ 80 (793)
++++|+||++++|..++++||+++|++|+.||+.|||+++++..||+|||||||||||+|...++++. ..+.+.+.++.
T Consensus 218 ~~~~y~yL~~~~~~~~~~~~d~~~f~~~~~al~~lG~~~~e~~~I~~iLaaILhLGni~F~~~~~~~~~~~~~~~~~l~~ 297 (677)
T smart00242 218 SPEDYRYLNQGGCLSVDGIDDAEEFKETLNAMRVLGFSEEEQESIFKILAAILHLGNIEFEEGRNDNAASTVKDKEELEN 297 (677)
T ss_pred ChhhCceeCCCCCccCCCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceeEEecCCCCcccccCCHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999987654332 34778899999
Q ss_pred HHHHhCCCHHHHHHHHccceeeecCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCcceeEEeec
Q 003820 81 VAKLIGCDIGELKLALSTRKMRVGNDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDI 160 (793)
Q Consensus 81 ~a~LLgv~~~~L~~~L~~~~i~~~~e~i~~~lt~~qA~~~rdaLak~LY~rLF~wlV~~IN~~l~~~~~~~~~~IgILDI 160 (793)
||.||||++++|.++|+++++.+++|.+++++++++|.+.||+|||+||++||+|||.+||.+|.+.. ....+||||||
T Consensus 298 ~a~LLgv~~~~L~~~l~~~~~~~~~e~~~~~~~~~~a~~~rd~lak~lY~~lF~wiV~~iN~~l~~~~-~~~~~IgiLDi 376 (677)
T smart00242 298 AAELLGVDPEELEKALTKRKIKTGGEVITKPLNVEQALDARDALAKALYSRLFDWLVKRINKSLSFKD-GSTYFIGVLDI 376 (677)
T ss_pred HHHHhCCCHHHHHHHhcccEEEeCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCceEEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999998743 45679999999
Q ss_pred CCCccCCCCChhHHHHHHhhHHHHHHHHHHhhHHHHHHHhhcCCcccccccCCchhHHHhhhcCCCccccccccccCCCC
Q 003820 161 YGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEKKPLGLLSLLDEESTFPN 240 (793)
Q Consensus 161 ~GFE~f~~NsfEQlcINyaNEkLq~~f~~~~f~~eqeeY~~EgI~w~~i~f~dN~~~ldLie~kp~Gil~lLDee~~~p~ 240 (793)
||||+|+.|||||||||||||+||++|++++|+.||++|.+|||+|+.|+|.||++|||||+++|.|||++|||||++|+
T Consensus 377 fGFE~f~~NsfEQLcINyaNEkLq~~f~~~~f~~eq~~y~~EgI~~~~i~~~dN~~~l~li~~~~~Gil~lLdee~~~~~ 456 (677)
T smart00242 377 YGFEIFEVNSFEQLCINYANEKLQQFFNQHVFKLEQEEYEREGIDWTFIDFFDNQDCIDLIEKKPPGILSLLDEECRFPK 456 (677)
T ss_pred ccccccccCCHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHHcCCccHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHcCCCCccccCC---CCCcEEEecCccccccccchhhhccccccHHHHHHHhhcCCchH-HHhhhccc
Q 003820 241 GTDLTFANKLKQHLNSNPCFRGER---DKSFTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCSCHLP-QIFASNML 316 (793)
Q Consensus 241 ~tD~~f~~kl~~~~~~~~~~~~~~---~~~F~I~HyaG~V~Y~v~gfleKN~D~l~~~~~~ll~~S~~~~~-~lf~~~~~ 316 (793)
+||++|++||++++++|++|..++ +..|+|+||||+|+|+++||++||+|.++++++++|++|+++++ .+|+....
T Consensus 457 ~td~~~~~kl~~~~~~~~~~~~~~~~~~~~F~I~H~AG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~n~~i~~lf~~~~~ 536 (677)
T smart00242 457 ATDQTFLEKLNQTHEKHPHFSKPRKKGRTEFIIKHYAGDVTYDVTGFLEKNKDTLFKDLIELLQSSKNPLIASLFPSGES 536 (677)
T ss_pred CCHHHHHHHHHHHhcCCCCccCCCCCCCCeEEEEecceeEeecCccHHHHccchhhHHHHHHHHhCCcHHHHHHhccccc
Confidence 999999999999999999998763 56899999999999999999999999999999999999999976 47754331
Q ss_pred ccCCCCccCCCccCCCCCCCCccHHHHHHHHHHHHHHHHhccCCeeeeecCCCCCCCCCccchhHHHHHhhhhChhHHHH
Q 003820 317 SQSNKPVVGPLYKAGGADSQKLSVATKFKGQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVR 396 (793)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~tv~~~f~~~L~~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~vr 396 (793)
.. +...+.+||+++|+.||+.||+.|++|+||||||||||+.+.|+.||..+|++||||+||||+++
T Consensus 537 ~~-------------~~~~~~~tv~~~fk~~L~~L~~~l~~t~~hfIRCIKPN~~k~~~~Fd~~~V~~QLr~~Gvle~ir 603 (677)
T smart00242 537 NA-------------GSKKRFRTVGSQFKESLNKLMDTLNSTNPHFIRCIKPNEEKKPGDFDSSLVLHQLRYLGVLETIR 603 (677)
T ss_pred cc-------------cccCCCCcHHHHHHHHHHHHHHHHhccCCeEEEEeCCCcccCcccccHHHHHHHHHhcccHHHHH
Confidence 10 01224589999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCccChHHHHHHhhccccccCCC--CChHHHHHHHHHHcCCCCcceeecceeeeeeeccccccccccc
Q 003820 397 ISRSGFPTRMSHQKFARRYGFLLLESVAS--QDPLSVSVAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTRN 468 (793)
Q Consensus 397 i~r~Gyp~r~~~~eF~~RY~~L~~~~~~~--~d~~~~~~~il~~~~~~~~~~~vGkTKVFlr~~~~~~LE~~R~ 468 (793)
|++.|||+|++|.+|+.||++|++..++. .|+++.|+.||+.+++++.+|++|+||||||.+++..||+.|.
T Consensus 604 i~r~Gyp~r~~~~~F~~ry~~L~~~~~~~~~~~~k~~~~~iL~~~~~~~~~~~iGkTkVFlk~~~~~~Le~~R~ 677 (677)
T smart00242 604 IRRAGFPYRLPFDEFLQRYRVLLPDTWPPWGGDAKEACEALLQSLGLDEDEYQLGKTKVFLRPGQLAELEELRE 677 (677)
T ss_pred HHHccccceecHHHHHHHHHHhCcccccccCCCHHHHHHHHHHhcCCCcccEEecCceEeECccHHHHHHhhcC
Confidence 99999999999999999999999976653 3689999999999999999999999999999999999998873
No 15
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=100.00 E-value=1.1e-113 Score=941.93 Aligned_cols=494 Identities=37% Similarity=0.638 Sum_probs=451.5
Q ss_pred CCCccCccccCCCccccCCcccHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhcCeeEEeeCCCCceeecCchHHHH
Q 003820 1 MSAKEYKYLRQSSCYSINGVDDAEQFRIVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNENHVEPVADEGLIT 80 (793)
Q Consensus 1 ~~~~~y~yL~~~~~~~~~~~dD~~~f~~~~~Al~~lg~~~~~~~~if~ilaaILhLGNi~F~~~~~~~~~~~~~~~~l~~ 80 (793)
+.|+.|.||+.++|+.++++||..+|+.|+.||+++||.+++|+.||++||+|||||||+|.+. ++.+.|.+.+.++-
T Consensus 229 ~~pe~Y~Y~~~sg~~s~D~idd~kdfq~Tl~AM~vIGi~~~eQ~~v~rmva~IL~lGNIsF~Ee--~~~a~V~~~~~~~f 306 (1106)
T KOG0162|consen 229 QEPEYYVYLNASGCYSVDDIDDRKDFQETLHAMKVIGINQEEQDEVLRMVAGILHLGNISFIEE--GNYAAVSDKSVLEF 306 (1106)
T ss_pred CCchheeeeccccceeccccchHHHHHHHHHHheeccCChHHHHHHHHHHHHHHhccceeEEee--CCcceeccchHHHh
Confidence 4689999999999999999999999999999999999999999999999999999999999974 34577888899999
Q ss_pred HHHHhCCCHHHHHHHHccceeee----cCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCcceeE
Q 003820 81 VAKLIGCDIGELKLALSTRKMRV----GNDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSIS 156 (793)
Q Consensus 81 ~a~LLgv~~~~L~~~L~~~~i~~----~~e~i~~~lt~~qA~~~rdaLak~LY~rLF~wlV~~IN~~l~~~~~~~~~~Ig 156 (793)
.|.||||++..|.+.||.|.+.. ..+.+..+|+++||.+.||||||+||.+||||||++||.+|...+.....+||
T Consensus 307 ~ayLlgi~s~~l~~~Lt~R~M~s~~G~kr~~~~v~LNv~QA~~~RDAlakaiy~~lFD~lV~rvNkam~~~~~~~~~sIG 386 (1106)
T KOG0162|consen 307 PAYLLGIDSARLEEKLTSRIMESKWGGKREVIHVPLNVEQASYTRDALAKAIYARLFDWLVERVNKAMQAFKGSEEYSIG 386 (1106)
T ss_pred HHHHhcCCHHHHHHHHHHHHHhhcccccceeEEecccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccee
Confidence 99999999999999999999863 35889999999999999999999999999999999999999965555668999
Q ss_pred EeecCCCccCCCCChhHHHHHHhhHHHHHHHHHHhhHHHHHHHhhcCCcccccccCCchhHHHhhhc-CCCccccccccc
Q 003820 157 ILDIYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEK-KPLGLLSLLDEE 235 (793)
Q Consensus 157 ILDI~GFE~f~~NsfEQlcINyaNEkLq~~f~~~~f~~eqeeY~~EgI~w~~i~f~dN~~~ldLie~-kp~Gil~lLDee 235 (793)
||||||||+|++||||||||||.||||||.|++-+++.|||||.+|||.|++|.|.||.-++||||. .|.||+++|||.
T Consensus 387 iLDIYGFEIFe~N~FEQ~CINfVNEKLQQIFIeLTLKaEQEeYvrE~I~WTpIkYFnNKvVCDLIE~K~PPGims~ldD~ 466 (1106)
T KOG0162|consen 387 ILDIYGFEIFENNGFEQFCINFVNEKLQQIFIELTLKAEQEEYVREGIKWTPIKYFNNKVVCDLIENKRPPGIMSALDDV 466 (1106)
T ss_pred eEEeeeeeecccCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcccccchhhcCCeeeeehhhccCCchHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999995 589999999999
Q ss_pred cCC----CCCCcHHHHHHHHHHcCCCCccccCCCCCcEEEecCccccccccchhhhccccccHHHHHHHhhcCCchH-HH
Q 003820 236 STF----PNGTDLTFANKLKQHLNSNPCFRGERDKSFTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCSCHLP-QI 310 (793)
Q Consensus 236 ~~~----p~~tD~~f~~kl~~~~~~~~~~~~~~~~~F~I~HyaG~V~Y~v~gfleKN~D~l~~~~~~ll~~S~~~~~-~l 310 (793)
|.- ..|.|.+|+++|...+++||+|.. +...|+|+||||+|+||++||.+||+|.|..|+++||.+|.++|+ .+
T Consensus 467 ~At~Ha~~~~aDqa~~qrLn~~~~s~phF~~-~s~~FvIkHYAGdVtYdi~G~~drNrD~L~~DlieLm~ts~~~Fl~sl 545 (1106)
T KOG0162|consen 467 CATAHADSEGADQALLQRLNKLFGSHPHFES-RSNGFVIKHYAGDVTYDIDGFCDRNRDVLFKDLIELMQTSENPFLKSL 545 (1106)
T ss_pred HHHhccccchhHHHHHHHHHHHhcCCCcccc-ccCceEEEEeccceeeecccccccchhHHHHHHHHHHhccchHHHHHh
Confidence 974 357899999999999999999975 467899999999999999999999999999999999999999976 57
Q ss_pred hhhcccccCCCCccCCCccCCCCCCCCccHHHHHHHHHHHHHHHHhccCCeeeeecCCCCCCCCCccchhHHHHHhhhhC
Q 003820 311 FASNMLSQSNKPVVGPLYKAGGADSQKLSVATKFKGQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCG 390 (793)
Q Consensus 311 f~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~f~~~L~~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~g 390 (793)
|+.....++ ...++|.+++.+.|-+.|+++|..|.||||||||||+.|+|+.||...|++|+.|+|
T Consensus 546 FPe~v~~ds--------------krRP~Tag~kIkkqANdLVeTLmKc~P~YIR~IKPNeTK~pnD~ee~~V~HQveYLG 611 (1106)
T KOG0162|consen 546 FPENVDADS--------------KRRPPTAGDKIKKQANDLVETLMKCQPHYIRCIKPNETKSPNDWEESRVKHQVEYLG 611 (1106)
T ss_pred Cchhhcccc--------------cCCCCCchhhHHhhHHHHHHHHHhcCcceeEeeCCCCCCCCccHHHHHHHHHHHhcc
Confidence 876553222 123589999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhcCCCCccChHHHHHHhhccccccCCCC--ChHHHHHHHHHHcCCCCcceeecceeeeeeec-ccccccccc
Q 003820 391 VLEVVRISRSGFPTRMSHQKFARRYGFLLLESVASQ--DPLSVSVAILHQFNILPEMYQVGYTKLFFRAG-QIGMLEDTR 467 (793)
Q Consensus 391 vle~vri~r~Gyp~r~~~~eF~~RY~~L~~~~~~~~--d~~~~~~~il~~~~~~~~~~~vGkTKVFlr~~-~~~~LE~~R 467 (793)
+-|.|||+|+||.+|..|+.|++||.+|.|.+++.| |.+++|+.||...++++++||+|.||||++.. .+..||++|
T Consensus 612 LqENiRvRRAGfAYRr~F~kF~qRyailsp~t~~twqGD~~~av~~il~~~~m~~~qyQmG~tkVFiKnPEsLF~LEemR 691 (1106)
T KOG0162|consen 612 LQENIRVRRAGFAYRRAFDKFAQRYAILSPQTWPTWQGDEKQAVEHILRDVNMPSDQYQMGVTKVFIKNPESLFLLEEMR 691 (1106)
T ss_pred hhhheeehhhhhHHHHHHHHHHHHheecCcccccccccchHHHHHHHHHhcCCChhHhhccceeEEecChHHHHHHHHHH
Confidence 999999999999999999999999999999999876 88999999999999999999999999999975 589999999
Q ss_pred cccchh-hHhhhhhhcccccchhhcccccchhhhhhHHHHHHHHHHHH
Q 003820 468 NRTLHG-ILRVQSCFRGHQARLCLKELRRGIVALQSFIRGEKIRKEYA 514 (793)
Q Consensus 468 ~~~l~a-a~~IQ~~~Rg~~~R~~~~~~~~a~i~IQs~~Rg~~aRr~~~ 514 (793)
.+.... |.+||++||.|++|+.|.++|.-++.| .-|...||+|-
T Consensus 692 er~~d~~A~~IQkAWRrfv~rrky~k~ree~t~l---l~gKKeRRr~S 736 (1106)
T KOG0162|consen 692 ERKWDGMARRIQKAWRRFVARRKYEKMREEATKL---LLGKKERRRYS 736 (1106)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcchHHHHHHH
Confidence 998864 568999999988888888888655443 23555666553
No 16
>cd01379 MYSc_type_III Myosin motor domain, type III myosins. Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the
Probab=100.00 E-value=9.9e-112 Score=986.55 Aligned_cols=429 Identities=38% Similarity=0.657 Sum_probs=397.5
Q ss_pred CCccCccccCCCccccCCcc----cHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhcCeeEEeeCC---CCceeecC
Q 003820 2 SAKEYKYLRQSSCYSINGVD----DAEQFRIVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDN---ENHVEPVA 74 (793)
Q Consensus 2 ~~~~y~yL~~~~~~~~~~~d----D~~~f~~~~~Al~~lg~~~~~~~~if~ilaaILhLGNi~F~~~~~---~~~~~~~~ 74 (793)
++++|+||++++|..+++++ |+.+|+.|+.||++|||+++++..||+|||||||||||+|.+.++ .+.+.+.+
T Consensus 211 ~~~~~~yL~~~~~~~~~~~~~~~~~~~~f~~~~~al~~lg~~~~e~~~I~~iLaaILhLGNi~F~~~~~~~~~~~~~i~~ 290 (653)
T cd01379 211 ESKTPRYLQNEATRVVQDITSNKFYKDQFEQIEQCFRVIGFTDEEVGSVYRILAAILNLGDIEFGSVASEHQTDKSRVSN 290 (653)
T ss_pred CccccCccCCCCccccCCCccchhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceEEEeccccCCCcccccCC
Confidence 35689999999887777775 478999999999999999999999999999999999999987543 24567888
Q ss_pred chHHHHHHHHhCCCHHHHHHHHccceeeecCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCC----C
Q 003820 75 DEGLITVAKLIGCDIGELKLALSTRKMRVGNDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKR----R 150 (793)
Q Consensus 75 ~~~l~~~a~LLgv~~~~L~~~L~~~~i~~~~e~i~~~lt~~qA~~~rdaLak~LY~rLF~wlV~~IN~~l~~~~~----~ 150 (793)
.+.+..||.||||++++|.++|+++++.++|+.++++++++||.++||||||+||++||+|||.+||.+|.+... .
T Consensus 291 ~~~l~~~A~LLgv~~~~L~~~L~~~~~~~~ge~i~~~~~~~qA~~~rdalak~lY~~LF~wiV~~IN~~l~~~~~~~~~~ 370 (653)
T cd01379 291 VAALENAASLLCIRSDELQEALTSHCVVTRGETIVRHNTVEKATDARDAMAKALYGRLFSWIVNRINSLLKHDRNASNSS 370 (653)
T ss_pred HHHHHHHHHHhCCCHHHHHHHhcccEEEeCCceeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999987432 2
Q ss_pred CcceeEEeecCCCccCCCCChhHHHHHHhhHHHHHHHHHHhhHHHHHHHhhcCCcccccccCCchhHHHhhhcCCCcccc
Q 003820 151 TGRSISILDIYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEKKPLGLLS 230 (793)
Q Consensus 151 ~~~~IgILDI~GFE~f~~NsfEQlcINyaNEkLq~~f~~~~f~~eqeeY~~EgI~w~~i~f~dN~~~ldLie~kp~Gil~ 230 (793)
...+||||||||||+|+.||||||||||||||||++|++++|+.||++|.+|||+|+.|+|.||++|||||+++|.|||+
T Consensus 371 ~~~~IgiLDI~GFE~f~~NsfEQLcINyaNEkLQ~~f~~~vf~~Eq~eY~~EgI~~~~i~~~dN~~~ldli~~kp~Gil~ 450 (653)
T cd01379 371 DQLNVGILDIFGFENFKKNSFEQLCINIANEQIQYYFNQHIFAWEQQEYLNEGVDARLVEYEDNRPLLDMFLQKPLGLLA 450 (653)
T ss_pred ccceEEEEeccccccCCCCCHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcHHHHHhHccCCCcHHH
Confidence 35699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCCcHHHHHHHHHHcCCCCccccCC--CCCcEEEecCccccccccchhhhccccccHHHHHHHhhcCCchH
Q 003820 231 LLDEESTFPNGTDLTFANKLKQHLNSNPCFRGER--DKSFTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCSCHLP 308 (793)
Q Consensus 231 lLDee~~~p~~tD~~f~~kl~~~~~~~~~~~~~~--~~~F~I~HyaG~V~Y~v~gfleKN~D~l~~~~~~ll~~S~~~~~ 308 (793)
+|||||++|+|||.+|++|++..+++ +.|..++ ...|+|+||||+|+|+++||++||+|.++.+++++|++|
T Consensus 451 lLdee~~~~~~td~~~~~kl~~~~~~-~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKNkD~l~~~~~~ll~~S----- 524 (653)
T cd01379 451 LLDEESRFPQATDQTLVEKFEDNLKS-KFFWRPKRVELSFGIHHYAGKVLYNASGFLEKNRDFLPADIVLLLRSS----- 524 (653)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHhcCC-CCccCCCCCCCceEEEEeceeEeecCCCHHHhccccccHHHHHHHHhC-----
Confidence 99999999999999999999998864 4554443 468999999999999999999999999999999999865
Q ss_pred HHhhhcccccCCCCccCCCccCCCCCCCCccHHHHHHHHHHHHHHHHhccCCeeeeecCCCCCCCCCccchhHHHHHhhh
Q 003820 309 QIFASNMLSQSNKPVVGPLYKAGGADSQKLSVATKFKGQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRC 388 (793)
Q Consensus 309 ~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~f~~~L~~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~ 388 (793)
+||+++|+.||+.||.+|.+|+||||||||||+.+.|+.||..+|++||||
T Consensus 525 -----------------------------~tv~~~fr~~l~~L~~~l~~t~~hfIRCIKPN~~k~~~~fd~~~V~~QLr~ 575 (653)
T cd01379 525 -----------------------------QTVASYFRYSLMDLLSKMVVGQPHFVRCIKPNEDRQAKKFDAEKVLKQLRY 575 (653)
T ss_pred -----------------------------cHHHHHHHHHHHHHHHHHhccCCceEEeeCCCcccCccccCHHHHHHHHHH
Confidence 479999999999999999999999999999999999999999999999999
Q ss_pred hChhHHHHHHhcCCCCccChHHHHHHhhccccccCC-CCChHHHHHHHHHHcCCCCcceeecceeeeeeecccccccccc
Q 003820 389 CGVLEVVRISRSGFPTRMSHQKFARRYGFLLLESVA-SQDPLSVSVAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTR 467 (793)
Q Consensus 389 ~gvle~vri~r~Gyp~r~~~~eF~~RY~~L~~~~~~-~~d~~~~~~~il~~~~~~~~~~~vGkTKVFlr~~~~~~LE~~R 467 (793)
+||||+|+|+|.|||+|++|.+|+.||++|++.... ..+.++.|+.||..+++ ++|++|+||||||.+++..||.+|
T Consensus 576 ~GvlE~iri~r~Gyp~r~~~~~F~~rY~~l~~~~~~~~~~~~~~~~~il~~~~~--~~~~~GktkvFlk~~~~~~le~~~ 653 (653)
T cd01379 576 TGILETARIRRQGFSHRILFANFIRRYCFLAYRFEEEPVSSPESCALILEKAKL--DNWALGKTKVFLKYYHVEQLNLMR 653 (653)
T ss_pred cchHHHHHHHHcCCCccccHHHHHHHHHHhccccccccCChHHHHHHHHHhCCC--CCEEecceEEEEecCHHHHHHhcC
Confidence 999999999999999999999999999999876543 34778999999998876 579999999999999999999875
No 17
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=100.00 E-value=1.5e-111 Score=998.30 Aligned_cols=463 Identities=45% Similarity=0.755 Sum_probs=420.3
Q ss_pred CCccCccccCCCccccCCcccHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhcCeeEEeeCCCCc--eeecCchHHH
Q 003820 2 SAKEYKYLRQSSCYSINGVDDAEQFRIVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNENH--VEPVADEGLI 79 (793)
Q Consensus 2 ~~~~y~yL~~~~~~~~~~~dD~~~f~~~~~Al~~lg~~~~~~~~if~ilaaILhLGNi~F~~~~~~~~--~~~~~~~~l~ 79 (793)
++++|+||++++|..++++||+++|+.++.||++|||+++++..||+|||||||||||+|...++++. +.+.+.+.++
T Consensus 210 ~~~~y~yL~~~~~~~~~~~~d~~~f~~~~~al~~lg~~~~e~~~i~~iLaaILhLGni~f~~~~~~~~~~~~~~~~~~l~ 289 (679)
T cd00124 210 RPESYRYLNQGGCNDVDGIDDAEEFEELKEALKSLGFSEEEIESIFRILAAILHLGNIEFKSVGGEGQEAAEVKNTEVLS 289 (679)
T ss_pred CcccCeeeCCCCcccCCCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcCeeEEecCCCCcceeecCCHHHHH
Confidence 45789999999999889999999999999999999999999999999999999999999987655443 6788899999
Q ss_pred HHHHHhCCCHHHHHHHHccceeeecCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCcceeEEee
Q 003820 80 TVAKLIGCDIGELKLALSTRKMRVGNDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILD 159 (793)
Q Consensus 80 ~~a~LLgv~~~~L~~~L~~~~i~~~~e~i~~~lt~~qA~~~rdaLak~LY~rLF~wlV~~IN~~l~~~~~~~~~~IgILD 159 (793)
.+|.||||++++|.++|+++++.++|+.+++++++++|..+||+|||+||++||+|||.+||.+|.+. .....+|||||
T Consensus 290 ~~a~LLgv~~~~L~~~l~~~~~~~~~~~~~~~~~~~~a~~~rdalak~lY~~lF~wiV~~iN~~l~~~-~~~~~~IgiLD 368 (679)
T cd00124 290 KAAELLGLDPEELEEALTYKVTKVGGEVITIPLTKEEAVDSRDSLAKALYSRLFDWIVSRINSSLKPK-DGRSLFIGILD 368 (679)
T ss_pred HHHHHhCCCHHHHHHHhhccEEEeCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCCceeeEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999874 33567999999
Q ss_pred cCCCccCCCCChhHHHHHHhhHHHHHHHHHHhhHHHHHHHhhcCCcccccccCCchhHHHhhhcCCCccccccccccCCC
Q 003820 160 IYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEKKPLGLLSLLDEESTFP 239 (793)
Q Consensus 160 I~GFE~f~~NsfEQlcINyaNEkLq~~f~~~~f~~eqeeY~~EgI~w~~i~f~dN~~~ldLie~kp~Gil~lLDee~~~p 239 (793)
|||||+|+.|||||||||||||+||++|++++|+.||++|.+|||+|+.|+|.||++|||||+++|.|||++|||||++|
T Consensus 369 i~GFE~f~~NsfEQLcINy~NEkLq~~f~~~~f~~eq~~y~~EgI~~~~i~~~dn~~~ldli~~~~~Gi~~lLdee~~~~ 448 (679)
T cd00124 369 IFGFEIFEKNSFEQLCINYANEKLQQFFNQHVFKLEQEEYQEEGIDWESIDFTDNQEVIDLIEKKPGGLLSLLDEECLFP 448 (679)
T ss_pred ccccccCCCCCHHHHhcccchHHHHHHHHHHHHHHHHHHHHhcCCCccCCcCCCCHHHHHHHhcCCCcHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHcCCCCccccC---CCCCcEEEecCccccccccchhhhccccccHHHHHHHhhcCCchH-HHhhhcc
Q 003820 240 NGTDLTFANKLKQHLNSNPCFRGE---RDKSFTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCSCHLP-QIFASNM 315 (793)
Q Consensus 240 ~~tD~~f~~kl~~~~~~~~~~~~~---~~~~F~I~HyaG~V~Y~v~gfleKN~D~l~~~~~~ll~~S~~~~~-~lf~~~~ 315 (793)
++||.+|++||++.+++|++|..+ .+..|+|+||||+|+|+++||++||+|.++++++++|++|+++++ .+|....
T Consensus 449 ~~~d~~~~~kl~~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~v~gfleKN~D~l~~~~~~ll~~S~~~~i~~lf~~~~ 528 (679)
T cd00124 449 KGTDETFLEKLNNKLKSNNAFYPAKKNAPTEFTIKHYAGDVTYDARGFLEKNKDVLSPELVSLLKSSSNPFIRELFESEL 528 (679)
T ss_pred CCCHHHHHHHHHHHhcCCcccccCCCCCCCceEEEeeceeEEecCCCHHHhcCCcccHHHHHHHHhCCcHHHHHHhcccc
Confidence 999999999999999999986332 256999999999999999999999999999999999999999976 5775433
Q ss_pred cccCCCCccCCCccCCCCCCCCccHHHHHHHHHHHHHHHHhccCCeeeeecCCCCCCCCCccchhHHHHHhhhhChhHHH
Q 003820 316 LSQSNKPVVGPLYKAGGADSQKLSVATKFKGQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVV 395 (793)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~tv~~~f~~~L~~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~v 395 (793)
...+..+ .+ ....+....+.+||+++|+.||+.||++|++|+||||||||||+.+.|+.||..+|++||||+||+|+|
T Consensus 529 ~~~~~~~-~~-~~~~~~~~~~~~tv~~~f~~qL~~L~~~L~~t~~hfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvlE~i 606 (679)
T cd00124 529 SKTGNSS-TG-STSSKGKKKKGQTVGSQFRTSLDALMATLNSTEPHFIRCIKPNEEKKPNAFDSGKVLQQLRYLGILETI 606 (679)
T ss_pred ccccccc-cc-cccccccccCCCcHHHHHHHHHHHHHHHHhcCCCeEEEEECCCcccCCCccChHHHHHHHHHhchHHHH
Confidence 2111100 00 011112234578999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCccChHHHHHHhhccccccCCCC-ChHHHHHHHHHHcCCCCcceeecceeeeeeecccccccccc
Q 003820 396 RISRSGFPTRMSHQKFARRYGFLLLESVASQ-DPLSVSVAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTR 467 (793)
Q Consensus 396 ri~r~Gyp~r~~~~eF~~RY~~L~~~~~~~~-d~~~~~~~il~~~~~~~~~~~vGkTKVFlr~~~~~~LE~~R 467 (793)
+|+|.|||+|++|.+|+.||++|++...+.. .....|..+|..+++++++|++|+||||||.+++..||.+|
T Consensus 607 rirr~Gyp~R~~~~eF~~rY~~L~~~~~~~~~~~~~~~~~il~~~~~~~~~~~vGkTkVFlr~~~~~~LE~~r 679 (679)
T cd00124 607 RIRRLGFSVRIPFDEFLSRYRFLAPDLLEKVSLTKKQVECLLELLGLPKDEWQVGKTKVFLKEGQLSELEKMR 679 (679)
T ss_pred HHHHccCCceeeHHHHHHHHHHhCcccccccCCcHHHHHHHHHhcCCCccCEEecCCeEEECcCHHHHHhccC
Confidence 9999999999999999999999998876543 22334999999999999999999999999999999999875
No 18
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=100.00 E-value=1.3e-110 Score=1032.60 Aligned_cols=507 Identities=40% Similarity=0.660 Sum_probs=460.7
Q ss_pred CCccCccccCCCccccCCcccHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhcCeeEEeeCCCCceeecCchHHHHH
Q 003820 2 SAKEYKYLRQSSCYSINGVDDAEQFRIVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNENHVEPVADEGLITV 81 (793)
Q Consensus 2 ~~~~y~yL~~~~~~~~~~~dD~~~f~~~~~Al~~lg~~~~~~~~if~ilaaILhLGNi~F~~~~~~~~~~~~~~~~l~~~ 81 (793)
++.+|.|+.++.. .+||+||+++|+.|..||++|||+++++.+||+|+|||||||||.|....+.+.+.+.+.+.++.+
T Consensus 299 ~~~~Y~f~~~~~~-~i~g~dd~eef~~t~~a~~ilgfs~~E~~~~~~i~sailhlGn~~f~~~~~~~qa~~~~~~~a~ka 377 (1930)
T KOG0161|consen 299 NVKDYKFLSNGES-TIPGVDDAEEFQETDEAMDILGFSEEEKISIFRIVSAILHLGNIKFKQEPREEQAEFDNTEVADKA 377 (1930)
T ss_pred cchhhhhhccccC-CCCCcchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcchhhhccccccccCCCCchHHHHH
Confidence 4789999999865 999999999999999999999999999999999999999999999998777788999999999999
Q ss_pred HHHhCCCHHHHHHHHccceeeecCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCcceeEEeecC
Q 003820 82 AKLIGCDIGELKLALSTRKMRVGNDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIY 161 (793)
Q Consensus 82 a~LLgv~~~~L~~~L~~~~i~~~~e~i~~~lt~~qA~~~rdaLak~LY~rLF~wlV~~IN~~l~~~~~~~~~~IgILDI~ 161 (793)
|.||||++.+|..+++++.+++|++.|.+..+.+|+..+..+|||++|+|||.|||.+||.+|... .+...|||||||+
T Consensus 378 ~~llg~~~~~~~~al~~priKvg~e~v~k~q~~~q~~~~v~alAk~lYerlF~wlV~riN~sld~~-~~~~~fIgvLDia 456 (1930)
T KOG0161|consen 378 CHLLGINVEEFLKALLRPRIKVGREWVSKAQNVEQVLFAVEALAKALYERLFGWLVKRINKSLDSK-QQRDYFIGVLDIA 456 (1930)
T ss_pred HHHcCCCHHHHHHHhcccceeccchhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-cccCCcceeeeec
Confidence 999999999999999999999999999999999999999999999999999999999999999976 5667899999999
Q ss_pred CCccCCCCChhHHHHHHhhHHHHHHHHHHhhHHHHHHHhhcCCcccccccC-CchhHHHhhhcCCCccccccccccCCCC
Q 003820 162 GFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFE-DNKDCLNLFEKKPLGLLSLLDEESTFPN 240 (793)
Q Consensus 162 GFE~f~~NsfEQlcINyaNEkLq~~f~~~~f~~eqeeY~~EgI~w~~i~f~-dN~~~ldLie~kp~Gil~lLDee~~~p~ 240 (793)
|||+|+.||||||||||+||+|||+||+|||.+||++|.+|||.|.+|+|. |-++|||||++ |.||+++|||||++|+
T Consensus 457 GFEIfe~nSFEQLciNytnEkLQqfFnh~mFvlEqeeY~~EgIew~fidfG~Dlq~~idLIEk-p~Gi~slLdEEc~~Pk 535 (1930)
T KOG0161|consen 457 GFEIFEFNSFEQLCINYTNEKLQQFFNHHMFVLEQEEYQREGIEWDFIDFGLDLQPTIDLIEK-PMGILSLLDEECVVPK 535 (1930)
T ss_pred cccccCcCCHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHhCCceeeeccccchhhhHHHHhc-hhhHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999999999999997 99999999998 6799999999999999
Q ss_pred CCcHHHHHHHHHHc-CCCCccccCC----CCCcEEEecCccccccccchhhhccccccHHHHHHHhhcCCch-HHHhhhc
Q 003820 241 GTDLTFANKLKQHL-NSNPCFRGER----DKSFTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCSCHL-PQIFASN 314 (793)
Q Consensus 241 ~tD~~f~~kl~~~~-~~~~~~~~~~----~~~F~I~HyaG~V~Y~v~gfleKN~D~l~~~~~~ll~~S~~~~-~~lf~~~ 314 (793)
+||.+|++||...+ ++||.|.+|+ +.+|.|.||||+|.|++.||++||+||++..++.+|..|++++ ..+|.+.
T Consensus 536 Atd~tf~~kL~~~~~gk~~~f~~~k~~~~~~~F~l~HyaG~V~Y~~~~WL~Knkdpln~~v~~ll~~s~~~~v~~l~~~~ 615 (1930)
T KOG0161|consen 536 ATDKTFLEKLCDQHLGKHPKFQKPKGKKAEAHFALVHYAGTVDYNVDGWLEKNKDPLNDNVVSLLKQSTNKLVSSLFQDY 615 (1930)
T ss_pred CccchHHHHHHHHhhccCccccCcccccchhhhheeeecceeccCccchhhcCCCCchHHHHHHHHhcccHHHHHHhhhh
Confidence 99999999999877 8999999884 4699999999999999999999999999999999999999875 5788763
Q ss_pred ccccCCCCccCCCccCCCCCCCCccHHHHHHHHHHHHHHHHhccCCeeeeecCCCCCCCCCccchhHHHHHhhhhChhHH
Q 003820 315 MLSQSNKPVVGPLYKAGGADSQKLSVATKFKGQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEV 394 (793)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~tv~~~f~~~L~~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~ 394 (793)
...... ...+.+ ...+..+.+.||+..|+.||+.||.+|.+|.|||||||.||+.+.|+.+|.++|+.||+|.||||.
T Consensus 616 ~~~~~~-~~~~~~-~~~~K~g~F~Tvs~~~keql~~Lm~~l~~T~phFvRCiIPn~~K~~g~ld~~lvl~QLrcngVLEg 693 (1930)
T KOG0161|consen 616 AGAAAA-AKGGEA-LKKTKKGSFRTVSQLYKEQLNKLMTTLRSTHPHFVRCIIPNEEKKPGKLDAPLVLNQLRCNGVLEG 693 (1930)
T ss_pred hccchh-hhhhhh-hcccCCcchhhHHHHHHHHHHHHHHHhccCCCceeEEeccCccccccccCHHHHHHHhhccCcHHH
Confidence 211100 000100 012234467899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCccChHHHHHHhhccccccCCC--CChHHHHHHHHHHcCCCCcceeecceeeeeeecccccccccccccch
Q 003820 395 VRISRSGFPTRMSHQKFARRYGFLLLESVAS--QDPLSVSVAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTRNRTLH 472 (793)
Q Consensus 395 vri~r~Gyp~r~~~~eF~~RY~~L~~~~~~~--~d~~~~~~~il~~~~~~~~~~~vGkTKVFlr~~~~~~LE~~R~~~l~ 472 (793)
|||+|.|||.|++|.+|..||.++.+...+. .|.+..|+.++..+.++.+.|+||.|||||+.|++..||++|...+.
T Consensus 694 IRicR~GfPnr~~~~eFrqRy~lla~~~~~~~~~d~k~~~~~~~~~l~~d~~lyriG~tKvFfkaGvla~LEe~Rd~~ls 773 (1930)
T KOG0161|consen 694 IRICRQGFPNRMPFQEFRQRYELLAADEPKKGFSDGKKACEKILEELLLDKNLYRIGHTKVFFKAGVLAHLEEMRDEKLS 773 (1930)
T ss_pred HHHHHhhCccccchHHHHHhHHhhhhhhccccccccchhHHHHHHHHhcccceEeecceeeeehHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999444444333 47889999999999999999999999999999999999999988766
Q ss_pred hhHhhhhhhcccccchhhcccccchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHH
Q 003820 473 GILRVQSCFRGHQARLCLKELRRGIVALQSFIRGEKIRKEYALVLQRHRAAVVIQRQIKSRVA 535 (793)
Q Consensus 473 aa~~IQ~~~Rg~~~R~~~~~~~~a~i~IQs~~Rg~~aRr~~~~l~~~~~AAi~IQ~~~R~~~~ 535 (793)
.+ ++.+|+.+|||++|+.|.+...+..|+.+||..+|.|..
T Consensus 774 ~i----------------------i~~fQA~~Rg~l~r~~~~kr~~~~~ai~~iQ~N~r~~~~ 814 (1930)
T KOG0161|consen 774 QI----------------------ITLFQAAIRGYLARKEFKKRLQQLDAIKVIQRNIRAYLK 814 (1930)
T ss_pred HH----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 54 466788888888898888888788899999999988854
No 19
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the
Probab=100.00 E-value=5.8e-108 Score=966.57 Aligned_cols=451 Identities=26% Similarity=0.402 Sum_probs=392.4
Q ss_pred ccccCCcccHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhcCeeEEeeCCCCceeecCchHHHHHHHHhCCCHHHHH
Q 003820 14 CYSINGVDDAEQFRIVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLIGCDIGELK 93 (793)
Q Consensus 14 ~~~~~~~dD~~~f~~~~~Al~~lg~~~~~~~~if~ilaaILhLGNi~F~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~ 93 (793)
+...+++||+++|+.|+.||++|||+++++..||+|||||||||||+|... .+.+.+.+.+.++.||.||||++++|.
T Consensus 224 ~~~~d~~~D~~~f~~~~~Al~~lGfs~~e~~~If~iLaaILhLGNi~f~~~--~~~~~~~~~~~~~~vA~LLgv~~~~L~ 301 (767)
T cd01386 224 SKPEDKQKAAIDFSRLQQAMEVLGISEGEQRAIWRVLAAIYHLGAAGATKV--AGRKQFARPEWAQKAAELLGCPLEELS 301 (767)
T ss_pred CCCcCcccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCceeeec--CCccccCCHHHHHHHHHHhCCCHHHHH
Confidence 334678999999999999999999999999999999999999999999862 234677888999999999999999999
Q ss_pred HHHccceeeecCce-------------EEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCcceeEEeec
Q 003820 94 LALSTRKMRVGNDT-------------IVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDI 160 (793)
Q Consensus 94 ~~L~~~~i~~~~e~-------------i~~~lt~~qA~~~rdaLak~LY~rLF~wlV~~IN~~l~~~~~~~~~~IgILDI 160 (793)
++|+++++.++++. +...+++.+|.++||||||+||++||+|||.+||.+|.+.. ....+||||||
T Consensus 302 ~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~rdalaK~lY~rLF~wiV~~IN~~l~~~~-~~~~~IgiLDI 380 (767)
T cd01386 302 SATFKHTLRGGINQMTTGPQRPGLSDTETSSGLKMTAVECLEGMASGLYSELFAAVVSLINRSISSSH-HSIASIMLVDT 380 (767)
T ss_pred HHhcccEEeecceeeeccccccccccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-CCCcEEEEEec
Confidence 99999888766432 33467889999999999999999999999999999998753 34579999999
Q ss_pred CCCccCCC------CChhHHHHHHhhHHHHHHHHHHhhHHHHHHHhhcCCccccccc-CCchhHHHhhhcCC--------
Q 003820 161 YGFESFDR------NSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDF-EDNKDCLNLFEKKP-------- 225 (793)
Q Consensus 161 ~GFE~f~~------NsfEQlcINyaNEkLq~~f~~~~f~~eqeeY~~EgI~w~~i~f-~dN~~~ldLie~kp-------- 225 (793)
||||+|++ |||||||||||||+|||+|++++|+.||+||.+|||+|+.+++ .||++|||||+++|
T Consensus 381 fGFE~f~~n~~~~~NsfEQLcINyaNEkLQq~f~~~vF~~Eq~eY~~EGI~~~~~~~~~dn~~~i~lid~~p~~~~~~~~ 460 (767)
T cd01386 381 PGFQNPASQGKDRAATFEELCHNYLQERLQLLFHHRTFVQPLERYAEEGVEVEFDLAEPSPGTTVALVDQAPQQVVVPAG 460 (767)
T ss_pred ccccccccccccCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCccccccCCCchhhHHHhhcccccccccch
Confidence 99999984 8999999999999999999999999999999999999987655 69999999999865
Q ss_pred ------CccccccccccCCCCCCcHHHHHHHHHHcCCCCccccC--------CCCCcEEEecCcc--ccccccchhhhcc
Q 003820 226 ------LGLLSLLDEESTFPNGTDLTFANKLKQHLNSNPCFRGE--------RDKSFTVSHYAGE--VIYDTTGFLEKNR 289 (793)
Q Consensus 226 ------~Gil~lLDee~~~p~~tD~~f~~kl~~~~~~~~~~~~~--------~~~~F~I~HyaG~--V~Y~v~gfleKN~ 289 (793)
.|||++|||||++|++||++|++||++.+++|++|... .+..|+|+||||+ |+|++.||+|||+
T Consensus 461 ~~~~~~~GIl~lLDEec~~p~~tD~~f~~kl~~~~~~~~~~~~~~~~~~~~~~~~~F~I~HyAG~~~V~Y~~~gfleKNk 540 (767)
T cd01386 461 LRAEDARGLLWLLDEEALVPGSSDDTFLERLFAAYGDRETRETGLSRLRTCEGPLQFVLFHLLGTNPVLYDVTGWLRRAK 540 (767)
T ss_pred hhccCCCchhhhhhHhhcCCCCcHHHHHHHHHHHhccCCCcccCccccccCCCCCcEEEEEcCCCCceEecCCCHHHhcC
Confidence 59999999999999999999999999999988887541 2358999999995 9999999999999
Q ss_pred ccc-cHHHHHHHhhcCCchH-HHhhhccccc-----C--------CCCcc-CCC-ccC---CCCCCCCccHHHHHHHHHH
Q 003820 290 DLL-HLDSIELLSSCSCHLP-QIFASNMLSQ-----S--------NKPVV-GPL-YKA---GGADSQKLSVATKFKGQLF 349 (793)
Q Consensus 290 D~l-~~~~~~ll~~S~~~~~-~lf~~~~~~~-----~--------~~~~~-~~~-~~~---~~~~~~~~tv~~~f~~~L~ 349 (793)
|.+ +.+++++|++|+++++ .+|....... + ..+.. ++. ++. +....++.||+++|+.||+
T Consensus 541 D~~~~~~~~~ll~~S~~~~i~~lF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~tv~~qFk~qL~ 620 (767)
T cd01386 541 PNPAALNAPQLLQDSKREEINSLFQGRAGLAPVCLGAGAGLEGTSQQALRRSSSIRRTFTSSTAAVKRKSPCVQVKLQVD 620 (767)
T ss_pred CCCChHHHHHHHHhCCcHHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHH
Confidence 965 6899999999999865 6886432110 0 00000 000 110 0112346799999999999
Q ss_pred HHHHHHhccCCeeeeecCCCCCCC----------------------CCccchhHHHHHhhhhChhHHHHHHhcCCCCccC
Q 003820 350 QLMQRLESTTPHFIRCIKPNNFQS----------------------PGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMS 407 (793)
Q Consensus 350 ~Lm~~L~~t~~hfIrCIkPN~~~~----------------------p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~ 407 (793)
.||++|++|+||||||||||+.+. |+.||..+|++||||+||||+|||+|+|||+|++
T Consensus 621 ~Lm~~L~~t~phfIRCIKPN~~k~~~~~~~~~~~~~~~~~~~~~~~p~~fd~~~V~~QLr~~GvlE~iri~r~Gfp~R~~ 700 (767)
T cd01386 621 ALIDTLRRSGLHFVHCYLPQHNGGKAMARTASPSPQQSEDNGVAAEPLALDIPLLRSQLRGSQILEAARLHRLGFPISVP 700 (767)
T ss_pred HHHHHHhccCCeeEEEeCccccccccccccccccccccccccccccccccCHHHHHHHHHhcccHHHHHHHhcCCccccc
Confidence 999999999999999999999874 7899999999999999999999999999999999
Q ss_pred hHHHHHHhhccccccCC-------CCChHHHHHHHHHHcCCCCcceeecceeeeeeecccccccccc
Q 003820 408 HQKFARRYGFLLLESVA-------SQDPLSVSVAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTR 467 (793)
Q Consensus 408 ~~eF~~RY~~L~~~~~~-------~~d~~~~~~~il~~~~~~~~~~~vGkTKVFlr~~~~~~LE~~R 467 (793)
|.+|+.||++|.+..++ ..|+++.|..||..+++++++|++|+||||||.+++..||+.|
T Consensus 701 ~~~F~~RY~~L~~~~~~~~~~~~~~~d~r~~~~~il~~~~~~~~~~~iGkTKVFlr~~~~~~LE~~R 767 (767)
T cd01386 701 LGEFVRRFGLLAEGLTKKVGGAGGGADERAAVEEILENLELDKSSYRIGHSQVFFRAGVLSRLEAQR 767 (767)
T ss_pred HHHHHHHHHhhChhhcccccccccCCCHHHHHHHHHHHcCCCcceEEeecceEEecccHHHHHhccC
Confidence 99999999999886543 2488999999999999999999999999999999999999876
No 20
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=100.00 E-value=2.9e-107 Score=971.58 Aligned_cols=455 Identities=46% Similarity=0.802 Sum_probs=396.0
Q ss_pred CCccCccccCCCccccCCcccHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhcCeeEEeeCCCCceeecCchHHHHH
Q 003820 2 SAKEYKYLRQSSCYSINGVDDAEQFRIVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNENHVEPVADEGLITV 81 (793)
Q Consensus 2 ~~~~y~yL~~~~~~~~~~~dD~~~f~~~~~Al~~lg~~~~~~~~if~ilaaILhLGNi~F~~~~~~~~~~~~~~~~l~~~ 81 (793)
++++|+||++++|..+++.||+.+|+.++.||++|||+++++..||+|||||||||||+|...++++.+.+.+.+.++.|
T Consensus 213 ~~~~~~yL~~~~~~~~~~~~d~~~f~~l~~al~~lg~~~~e~~~I~~iLaaILhLGni~F~~~~~~~~~~~~~~~~l~~~ 292 (689)
T PF00063_consen 213 DASDYRYLNQSGCSTIPGIDDAEEFQELKDALKTLGFSDEEIDDIFRILAAILHLGNIEFVEDESDESAEVENSEELQKA 292 (689)
T ss_dssp -GGGSTTCCTTSSSSBTTCTHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTTSSEEEETTSSSEEESTSHHHHHH
T ss_pred ccccccceecccccccCCccCHHHhhhhhhhhccccCchhHHHHHHHHHHHHhhhccccccccccccceeechHHHHHHh
Confidence 57899999999999999999999999999999999999999999999999999999999999887777889999999999
Q ss_pred HHHhCCCHHHHHHHHccceeeecCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCcceeEEeecC
Q 003820 82 AKLIGCDIGELKLALSTRKMRVGNDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIY 161 (793)
Q Consensus 82 a~LLgv~~~~L~~~L~~~~i~~~~e~i~~~lt~~qA~~~rdaLak~LY~rLF~wlV~~IN~~l~~~~~~~~~~IgILDI~ 161 (793)
|.||||++++|.++||++++.+++|.++++++++||.++||+|||+||++||+|||++||.+|++.......+|||||||
T Consensus 293 a~LLgv~~~~L~~~l~~~~~~~~~e~~~~~~~~~~a~~~rdalak~LY~~LF~wIV~~iN~~L~~~~~~~~~~IgILDi~ 372 (689)
T PF00063_consen 293 AELLGVDSEELEKALTTRTIKVGGETVTKPLSVEQASDARDALAKALYSRLFDWIVERINSALSPSESENSSSIGILDIF 372 (689)
T ss_dssp HHHTTS-HHHHHHHHHSEEEESTTSEEEEE-BHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--SS-S-SEEEEEEEEE
T ss_pred hhhcCCCHHHHHHHHhhccccccccccccccchhhhhhhhhhhhhhhhhHHHHHHHHhhhhccccccccccccCcccCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999998664567899999999
Q ss_pred CCccCCCCChhHHHHHHhhHHHHHHHHHHhhHHHHHHHhhcCCccccccc-CCchhHHHhhhcCCCccccccccccCCCC
Q 003820 162 GFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDF-EDNKDCLNLFEKKPLGLLSLLDEESTFPN 240 (793)
Q Consensus 162 GFE~f~~NsfEQlcINyaNEkLq~~f~~~~f~~eqeeY~~EgI~w~~i~f-~dN~~~ldLie~kp~Gil~lLDee~~~p~ 240 (793)
|||+|..||||||||||||||||++|++++|+.||++|.+|||+|+.++| .||++|||||+++|.|||++|||||.+|+
T Consensus 373 GFE~~~~N~fEQLciNyanErLq~~f~~~~f~~e~~~y~~EgI~~~~i~~~~dn~~~ldLi~~~~~Gil~lLdee~~~~~ 452 (689)
T PF00063_consen 373 GFENFSVNSFEQLCINYANERLQQFFNQHIFKSEQEEYKEEGIDWPFIDFNPDNQPCLDLIEKKPKGILSLLDEECLLPR 452 (689)
T ss_dssp -B---SSB-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCSCS-GCGHHHHHHHHHHSSTTSHHHHHHHHCTSTT
T ss_pred ccccccccccccceeeeccccccceeeeecccccccccccccccccccccccCchhhhhhhccccCCHHHHhhhhhhccc
Confidence 99999999999999999999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHc-CCCCccccC------CCCCcEEEecCccccccccchhhhccccccHHHHHHHhhcCCchH-HHhh
Q 003820 241 GTDLTFANKLKQHL-NSNPCFRGE------RDKSFTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCSCHLP-QIFA 312 (793)
Q Consensus 241 ~tD~~f~~kl~~~~-~~~~~~~~~------~~~~F~I~HyaG~V~Y~v~gfleKN~D~l~~~~~~ll~~S~~~~~-~lf~ 312 (793)
+||++|+++|.+.+ ++|++|.++ .+..|+|+||||+|.|++.||++||+|.++++++++|++|+++++ .+|+
T Consensus 453 ~sd~~fl~kl~~~~~~~~~~~~~~~~~~~~~~~~F~I~HyaG~V~Y~v~gfleKNrD~l~~~~~~ll~~S~n~~v~~lf~ 532 (689)
T PF00063_consen 453 GSDESFLEKLLKRHSGKHPSFVKPRFSRSTSKSSFTIKHYAGDVTYDVEGFLEKNRDPLSQDFVSLLRSSTNSFVSSLFS 532 (689)
T ss_dssp S-HHHHHHHHHHHHTTTSTTEECTSSSTSSTTSCEEEEETTEEEEEE-TTHHHHHHE-S-HHHHHHHHTSSSHHHHHHTH
T ss_pred chhhHHHHHHHhhcccCCCcccccccccccCCCceEeecccCcceeccccccccccchHHHHHHHHHHhCcCcccccccc
Confidence 99999999999999 888998665 357999999999999999999999999999999999999999865 6786
Q ss_pred hcccccCCCC--------ccCCCccCCCCCCCCccHHHHHHHHHHHHHHHHhccCCeeeeecCCCCCCCCCccchhHHHH
Q 003820 313 SNMLSQSNKP--------VVGPLYKAGGADSQKLSVATKFKGQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQ 384 (793)
Q Consensus 313 ~~~~~~~~~~--------~~~~~~~~~~~~~~~~tv~~~f~~~L~~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~ 384 (793)
.........+ ..+......+...+..||+++|+.||+.||+.|++|.||||||||||+.+.|+.||..+|.+
T Consensus 533 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~qf~~sL~~L~~~L~~t~~hfIrCIkPN~~~~~~~FD~~~V~~ 612 (689)
T PF00063_consen 533 SEATATSSSSSSLSRRSSSSSTQSRSSGSKKKKSTVSSQFRSSLDELMDTLRSTQPHFIRCIKPNDQKKPNQFDSKLVLR 612 (689)
T ss_dssp SHHH---S-S-S-BTTTTCCCTTSSCCCGGTCSSBHHHHHHHHHHHHHHHHCTSEEEEEEEE-SSSS--TT---HHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccHHHHHhhhhhcccceEEEeccccccccccccchheeh
Confidence 5542100000 00011112222345699999999999999999999999999999999999999999999999
Q ss_pred HhhhhChhHHHHHHhcCCCCccChHHHHHHhhccccccCC-----CCChHHHHHHHHHHcCCCCcceeecceeeeee
Q 003820 385 QLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFLLLESVA-----SQDPLSVSVAILHQFNILPEMYQVGYTKLFFR 456 (793)
Q Consensus 385 QLr~~gvle~vri~r~Gyp~r~~~~eF~~RY~~L~~~~~~-----~~d~~~~~~~il~~~~~~~~~~~vGkTKVFlr 456 (793)
||+|+||+|+++|++.|||+|++|.+|++||++|++.... ..++++.|+.||+.++++++.|++|+||||||
T Consensus 613 QLr~~gile~vri~~~Gyp~r~~~~eF~~RY~~L~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~iG~TkVFLk 689 (689)
T PF00063_consen 613 QLRYSGILETVRIRRQGYPVRLTFDEFLRRYKCLLPSSSSSSDSSKEDDKEACEALLEQLDLESSDYQIGKTKVFLK 689 (689)
T ss_dssp HHHHTTHHHHHHHHHCSSSEEEEHHHHHHHHGGGSTTCSHSS--HCSSHHHHHHHHHHHTTSEGTCEEEESSEEEEC
T ss_pred hhhhhhhhhhhhhhhcccceecchhhhhhhhceechhhcccccccCCCHHHHHHHHHHhCCCCccCEEECCcEEEEC
Confidence 9999999999999999999999999999999999998764 35899999999999999999999999999996
No 21
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=100.00 E-value=8.5e-103 Score=856.64 Aligned_cols=521 Identities=33% Similarity=0.552 Sum_probs=440.8
Q ss_pred CCccCccccCCCcc---------------------------ccCCcccHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHH
Q 003820 2 SAKEYKYLRQSSCY---------------------------SINGVDDAEQFRIVVEALDIVHVSKEDQESVFAMLAAVL 54 (793)
Q Consensus 2 ~~~~y~yL~~~~~~---------------------------~~~~~dD~~~f~~~~~Al~~lg~~~~~~~~if~ilaaIL 54 (793)
.|++|+||+.| |+ .-+-+||-.+|+.+..||..+|++++|+..||+++||||
T Consensus 267 ~pd~f~YL~rG-~t~yFan~~t~~ki~~nr~S~~~~~~~~~kD~iidD~~dF~rl~~Al~~~Glsd~Ekl~i~s~vA~vL 345 (1259)
T KOG0163|consen 267 KPDDFRYLKRG-CTQYFANAKTEQKIPGNRKSKNHQQKGSLKDPIIDDYQDFHRLEKALKLLGLSDTEKLFIWSTVAAVL 345 (1259)
T ss_pred CchhhhHHhcc-hhhhccCcchhhcCcccccCccccccCcccCcccccHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Confidence 58899999975 42 122379999999999999999999999999999999999
Q ss_pred HhcCeeEEeeCC--CCceee--cCchHHHHHHHHhCCCHHHHHHHHccceeee-----cCceEEecCCHHHHHHHHHHHH
Q 003820 55 WLGNVSFTVIDN--ENHVEP--VADEGLITVAKLIGCDIGELKLALSTRKMRV-----GNDTIVQNLTLSQATDTRDALA 125 (793)
Q Consensus 55 hLGNi~F~~~~~--~~~~~~--~~~~~l~~~a~LLgv~~~~L~~~L~~~~i~~-----~~e~i~~~lt~~qA~~~rdaLa 125 (793)
|||||+|++..+ .+.|.+ .+..+|..+|+|||++.++|...||.|.+.+ .|..|.+||.+.+|..+|||||
T Consensus 346 HLGNieFEE~~ddsrGGC~v~n~seqsL~~~a~LLGld~~elr~~L~aRvMqtt~GG~kGTvIrVPLK~~eA~n~RDALa 425 (1259)
T KOG0163|consen 346 HLGNIEFEEIPDDSRGGCQVSNGSEQSLTIAAELLGLDQTELRTGLCARVMQTTKGGFKGTVIRVPLKIHEASNARDALA 425 (1259)
T ss_pred HccccchhcccCcCCCceecccCchhhHHHHHHHhCCCHHHHHHHHHHHHHHhccCCccceEEEeeccHHhhcchHHHHH
Confidence 999999987643 234544 4567899999999999999999999998863 4678999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhccCCCCCcceeEEeecCCCccCCCCChhHHHHHHhhHHHHHHHHHHhhHHHHHHHhhcCCc
Q 003820 126 KSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGID 205 (793)
Q Consensus 126 k~LY~rLF~wlV~~IN~~l~~~~~~~~~~IgILDI~GFE~f~~NsfEQlcINyaNEkLq~~f~~~~f~~eqeeY~~EgI~ 205 (793)
|+||++||||||.+||+++.... +..+||||||.|||.|.+|||||||||||||+||++||+.|++.|||.|+.||+.
T Consensus 426 KaiYSkLFD~lV~~iNqsiPFe~--St~fiGVLDiAGFEyf~~NSFEQFCINyCNEKLQ~FFNerILkeEQElYekEGLn 503 (1259)
T KOG0163|consen 426 KAIYSKLFDWLVGRINQSIPFEK--STFFIGVLDIAGFEYFAVNSFEQFCINYCNEKLQKFFNERILKEEQELYEKEGLN 503 (1259)
T ss_pred HHHHHHHHHHHHHHhhccccccc--ccceeEEEeeccceeeecccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999997543 4579999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCchhHHHhhhcCCCccccccccccCCCCCCcHHHHHHHHHHcCCCCccccCC------------CCCcEEEec
Q 003820 206 WAKVDFEDNKDCLNLFEKKPLGLLSLLDEESTFPNGTDLTFANKLKQHLNSNPCFRGER------------DKSFTVSHY 273 (793)
Q Consensus 206 w~~i~f~dN~~~ldLie~kp~Gil~lLDee~~~p~~tD~~f~~kl~~~~~~~~~~~~~~------------~~~F~I~Hy 273 (793)
...|.|.||++||+|||.|..|||.|||||..+|+.++..|....++.+++|-....|| +..|.|+||
T Consensus 504 v~ei~f~DNqDcIeL~E~K~~GifdlLDEEaklP~~s~qhFT~~vHe~~k~HfRL~~PRkSklksHR~lRDdEG~liRHf 583 (1259)
T KOG0163|consen 504 VPEIEFTDNQDCIELIEAKSNGIFDLLDEEAKLPKPSYQHFTARVHESNKNHFRLDLPRKSKLKSHRELRDDEGFLIRHF 583 (1259)
T ss_pred CCceEeccchhHHHHHHHhccchhhhhhhhccCCCcchHHHHHHHHHhhhcceeecCCchhhhhhhhhhccccceeeeec
Confidence 99999999999999999999999999999999999999999999999887764443332 358999999
Q ss_pred CccccccccchhhhccccccHHHHHHHhhcCCch-HHHhhhcccccCCCCccCCCccCCCCCCCCccHHHHHHHHHHHHH
Q 003820 274 AGEVIYDTTGFLEKNRDLLHLDSIELLSSCSCHL-PQIFASNMLSQSNKPVVGPLYKAGGADSQKLSVATKFKGQLFQLM 352 (793)
Q Consensus 274 aG~V~Y~v~gfleKN~D~l~~~~~~ll~~S~~~~-~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~f~~~L~~Lm 352 (793)
||.|.|++.-|+|||.|.|+..+..|+..|++++ ..||.+...+ +.++.. ...+.-||+++|++||..||
T Consensus 584 AGaVCYeT~~FvEKNnD~LH~SLe~Li~es~~~ll~sLF~S~s~t-~a~~~~--------gkL~~iSVGaKFKtQL~~Ll 654 (1259)
T KOG0163|consen 584 AGAVCYETEQFVEKNNDALHNSLEGLIEESDNPLLVSLFPSGSST-SAKQTR--------GKLKFISVGAKFKTQLSELL 654 (1259)
T ss_pred ccceeechHHHHHhccHHHHHHHHHHHHhccchHHHHHccCCCCC-cccccc--------ceeeEEehhHHHHHHHHHHH
Confidence 9999999999999999999999999999999996 5688643211 111111 13456899999999999999
Q ss_pred HHHhccCCeeeeecCCCCCCCCCccchhHHHHHhhhhChhHHHHHHhcCCCCccChHHHHHHhhccccccCCCCChHHHH
Q 003820 353 QRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFLLLESVASQDPLSVS 432 (793)
Q Consensus 353 ~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~eF~~RY~~L~~~~~~~~d~~~~~ 432 (793)
+.|++|..|||||||||..+.|.+||...++.||+|+||+.++++++.|||.|..|.+.+.-|+..+|+.....||+-.|
T Consensus 655 dKL~stGt~FiRCiKPN~kM~~~~FeGs~iLsQLqCsGm~SVL~LMq~GyPSR~~F~dLYamYkk~lPpkLarLdpRlFc 734 (1259)
T KOG0163|consen 655 DKLESTGTHFIRCIKPNSKMIDRHFEGSAILSQLQCSGMISVLELMQHGYPSRTSFADLYAMYKKVLPPKLARLDPRLFC 734 (1259)
T ss_pred HHHHhcCCeeEEeecCccccccccccHHHHHHHhhhccHHHHHHHHhcCCCccccHHHHHHHHHhhCCHhhhcCChHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988888999999
Q ss_pred HHHHHHcCCCCcceeecceeeeeeecccccccccccccchhhHhhhhhhcccccchhhcccccchhhhhhHHHHHHHHHH
Q 003820 433 VAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTRNRTLHGILRVQSCFRGHQARLCLKELRRGIVALQSFIRGEKIRKE 512 (793)
Q Consensus 433 ~~il~~~~~~~~~~~vGkTKVFlr~~~~~~LE~~R~~~l~aa~~IQ~~~Rg~~~R~~~~~~~~a~i~IQs~~Rg~~aRr~ 512 (793)
+++.+.+|++.++|++|.|||||+.|-....+.+..........+-+.+--|+.+.++++..-++ +-.-+.
T Consensus 735 k~lF~aLgL~q~DfkFGlTKVFFr~GKFaEFDqiMksDPe~m~~lv~kVn~WLv~sRWkk~q~~a---------~sVIKL 805 (1259)
T KOG0163|consen 735 KALFQALGLDQNDFKFGLTKVFFRPGKFAEFDQIMKSDPETMLELVAKVNKWLVRSRWKKSQYGA---------LSVIKL 805 (1259)
T ss_pred HHHHHHhCCCcccccccceeEeecCcchHHHHHHHhcCHHHHHHHHHHHHHHHHHhHHHHhhhhh---------hheeeh
Confidence 99999999999999999999999999998888877665554443333344556666555433221 111111
Q ss_pred HHHHHhHHHHHHHHHHHhhhHHHHHHHHhhh
Q 003820 513 YALVLQRHRAAVVIQRQIKSRVARQKLKNIK 543 (793)
Q Consensus 513 ~~~l~~~~~AAi~IQ~~~R~~~~R~~~~~~r 543 (793)
-+++..+..+.+.+|++.|||++|+++....
T Consensus 806 kNkI~yRae~v~k~Q~~~Rg~L~rkr~~~ri 836 (1259)
T KOG0163|consen 806 KNKIIYRAECVLKAQRIARGYLARKRHRPRI 836 (1259)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhchHH
Confidence 1222334445566666666666666655443
No 22
>KOG4229 consensus Myosin VII, myosin IXB and related myosins [Cell motility]
Probab=100.00 E-value=4.2e-66 Score=613.12 Aligned_cols=554 Identities=31% Similarity=0.410 Sum_probs=455.9
Q ss_pred CccCccccCCCcccc-CCcccHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhcCeeEEeeC--CCCceeecCchHHH
Q 003820 3 AKEYKYLRQSSCYSI-NGVDDAEQFRIVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVID--NENHVEPVADEGLI 79 (793)
Q Consensus 3 ~~~y~yL~~~~~~~~-~~~dD~~~f~~~~~Al~~lg~~~~~~~~if~ilaaILhLGNi~F~~~~--~~~~~~~~~~~~l~ 79 (793)
+++|.||+++.+..+ ++.+|...|..+..||.++||+..++.+||+++|||||+|||+|.... ..+.+.+.+...++
T Consensus 273 ~e~y~yL~~~~~~~~~d~~~~~~~~~~l~~~m~v~~f~~~~~~si~~~la~il~~gni~~~~~~~~~~d~~~v~~~~~v~ 352 (1062)
T KOG4229|consen 273 AENYEYLEQGALFTISDGEDDVAQFIRLEAAMSVVGFTDKVLGSIFKSLAAILHIGNISYIKFALDQQDSAEVENEEAVE 352 (1062)
T ss_pred CCCHHHhhccccccccchHHHHHhHHHHHHHHHHhccchhHHHHHHHhcccceeecceeHHhhhcccccchhcccchHHH
Confidence 678999999999999 999999999999999999999999999999999999999999996532 34557788999999
Q ss_pred HHHHHhCCCHHHHHHHHccceeeecCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCC-CcceeEEe
Q 003820 80 TVAKLIGCDIGELKLALSTRKMRVGNDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRR-TGRSISIL 158 (793)
Q Consensus 80 ~~a~LLgv~~~~L~~~L~~~~i~~~~e~i~~~lt~~qA~~~rdaLak~LY~rLF~wlV~~IN~~l~~~~~~-~~~~IgIL 158 (793)
.+|.||+++...|.+++|.++....|+.+..++++++|.+.||++||+||++||.|||.+||..+.+.... ...+||||
T Consensus 353 ~vA~lL~~~~~~l~~alt~~~~~~~ge~~~~~l~~~~A~d~rda~ak~ly~~lf~~iv~rIn~~~~~~~~~~~~~~IgiL 432 (1062)
T KOG4229|consen 353 RVACLLLIKEKLLQEALTARVNVTRGELLLAPLLVERAVDVRDAMAKTLYGRLFDWIVLRINAALSPESDISDILSIGIL 432 (1062)
T ss_pred HHHHHhhcCHHHhhhhhcccceeeehhhhhhhhhHHHhccCchHHHHHHHHHHHHHHHhhHHhccCccccccccceeehh
Confidence 99999999999999999999999999999999999999999999999999999999999999999764321 35799999
Q ss_pred ecCCCccCCCCChhHHHHHHhhHHHHHHHHHHhhHHHHHHHhhcCCcccccccCCchhHHHhhhcCCCccccccccccCC
Q 003820 159 DIYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEKKPLGLLSLLDEESTF 238 (793)
Q Consensus 159 DI~GFE~f~~NsfEQlcINyaNEkLq~~f~~~~f~~eqeeY~~EgI~w~~i~f~dN~~~ldLie~kp~Gil~lLDee~~~ 238 (793)
||||||+|+.|||||+|||||||+||++||+|+|..||+||..|+|+|..|.|.||..|+|+|..+|.||+.+||||+.+
T Consensus 433 diFgfE~f~~nsfEq~~in~Ane~lQ~~fnqhIf~~Eq~ey~~e~I~w~~i~~~dN~~~ldli~~kp~gil~liDees~f 512 (1062)
T KOG4229|consen 433 DIFGFENFERNSFEQLCINLANEQLQYYFNQHIFALEQEEYDNESIDWRNIEFADNRRRLDLISPKPMGILSLIDEESRF 512 (1062)
T ss_pred hhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCCCeeeeeeeeccchhhhhccCccchhheecccCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcHHHHHHHHHHcCCCCccccC---CCCCcEEEecCccccccccchhhhccccccHHHHHHHhhcCCchHHHhhhcc
Q 003820 239 PNGTDLTFANKLKQHLNSNPCFRGE---RDKSFTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCSCHLPQIFASNM 315 (793)
Q Consensus 239 p~~tD~~f~~kl~~~~~~~~~~~~~---~~~~F~I~HyaG~V~Y~v~gfleKN~D~l~~~~~~ll~~S~~~~~~lf~~~~ 315 (793)
|+++|.+++.|++..++.+..+..+ ....|+|.||||.|.|++.||+|||+|.++.|+..++.+|.+.+...+.+..
T Consensus 513 P~~td~tl~~k~~~q~~~~~~y~~~k~~~e~~f~I~Hyagkv~y~~~~flekNrD~~~~d~~~~~~s~~~~~~~~~~~~~ 592 (1062)
T KOG4229|consen 513 PKATDQTLLLKLNMQHGSNNLYVFPKSRVETVFGITHYAGKVQYNIRGFLEKNRDTVRNDLVNLLRSSDESLLRQLVNGD 592 (1062)
T ss_pred CchHHHHHHHHhhhhhhcccccccccccccceeeeeeecceehhhhhhHHHhhhhhhhhhHHhhcccccchhhcccCCCC
Confidence 9999999999999999876655433 2579999999999999999999999999999999999998765443221000
Q ss_pred -----------------------------c----cc----------------C-----------CCCccC----------
Q 003820 316 -----------------------------L----SQ----------------S-----------NKPVVG---------- 325 (793)
Q Consensus 316 -----------------------------~----~~----------------~-----------~~~~~~---------- 325 (793)
. .. + +....|
T Consensus 593 ~~~~~~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~s~l~rg~~~~~~~i~~ 672 (1062)
T KOG4229|consen 593 PTAVSRWFELRALKVAMPVPLEVTLRRPVRKTLTADSSRSAPETTNCLPDKVLPEDRPSLFEELSALARGQDHFMRAISQ 672 (1062)
T ss_pred CccCCcchhhhhhcccccccchhhhccccccccccccccchHHHHHhhhccccccCChhhhcchhhcCCCccchhhhhhc
Confidence 0 00 0 000000
Q ss_pred ---------------C------------CccCCCC-------------C------C------------------------
Q 003820 326 ---------------P------------LYKAGGA-------------D------S------------------------ 335 (793)
Q Consensus 326 ---------------~------------~~~~~~~-------------~------~------------------------ 335 (793)
| .....+. . +
T Consensus 673 ~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ 752 (1062)
T KOG4229|consen 673 NPRYALEQGSQERKGPRRLSSRGSTATPSHDRPGRKTNLLYSEVVNGRKNSEYLCSPRPDLAERARVQLLEKNAINMKSE 752 (1062)
T ss_pred CchhhhhhcCcccCchhhhhhcccccCCCCCCccccccccchhhhcccccccccCCCCHHHHHHHHHHHHhhccccchhh
Confidence 0 0000000 0 0
Q ss_pred ------------------CCccHHHHHH----------------HHHHHHHHHHhccCCeeeeecCCCCCCCCCccchhH
Q 003820 336 ------------------QKLSVATKFK----------------GQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGL 381 (793)
Q Consensus 336 ------------------~~~tv~~~f~----------------~~L~~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~~ 381 (793)
.+..++.... .....++..+....|.|++|++-|..+....|+...
T Consensus 753 ~~~~~l~~~~~~~~~~~~~~e~~t~~~l~~~~kk~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 832 (1062)
T KOG4229|consen 753 RLTTLLPRYIPDPCLDPVRRERVTQLRLHQHKKKAFPQPLRSPQVRKSKLESYLAIAKELFVRRFLENQKKIGLRFPDNV 832 (1062)
T ss_pred hhcccccccCccccCCccccchhhhHHHHHhhccccCccccccchhhccchhhhhhhhHHHHHHHHHhhhhhccCCChHH
Confidence 0001222222 233447778888899999999999888888999999
Q ss_pred HHHHhhhhChhHHHHHHhcCCCCccChHHHHHHhhccccccCCCCChHHHHHHHHHHcCCCCcceeecceeeeeeecccc
Q 003820 382 VLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFLLLESVASQDPLSVSVAILHQFNILPEMYQVGYTKLFFRAGQIG 461 (793)
Q Consensus 382 V~~QLr~~gvle~vri~r~Gyp~r~~~~eF~~RY~~L~~~~~~~~d~~~~~~~il~~~~~~~~~~~vGkTKVFlr~~~~~ 461 (793)
|..|+.+.|+++.++++..+|+..++..+|..-+.+..+.... .........+....+.++.|.+++|+...-..
T Consensus 833 v~~~~~~t~~~~~~~v~~~~~~~~i~~~~~~~~~~i~~~~~~~-----~v~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~ 907 (1062)
T KOG4229|consen 833 VLRQVSYTGELDQEQVRRSLYFAEISPQDSVNQSRIGLPETVD-----TVADEEFSTLSCNADTIRLGVHVVFLLLNERS 907 (1062)
T ss_pred HHHhhhchhhhccchheeccccccccchhccccccccCCccch-----hhchhheeecccCccchhccceEEeecccchH
Confidence 9999999999999999999999999999999999988873221 11122233334467899999999999876544
Q ss_pred ccccc-ccccch-hhHhhhhhhcccccchhhcccccchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHH
Q 003820 462 MLEDT-RNRTLH-GILRVQSCFRGHQARLCLKELRRGIVALQSFIRGEKIRKEYALVLQRHRAAVVIQRQIKSRVARQKL 539 (793)
Q Consensus 462 ~LE~~-R~~~l~-aa~~IQ~~~Rg~~~R~~~~~~~~a~i~IQs~~Rg~~aRr~~~~l~~~~~AAi~IQ~~~R~~~~R~~~ 539 (793)
.++.. ...... -+...|++++....++.+..+..+.+.+| |+++..|+..........+++.+|..|+.+..+..+
T Consensus 908 ~~~~~l~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 985 (1062)
T KOG4229|consen 908 RTEVALKDEANDELSFFKQKWFRLTLERKGLLRLSEGSVLIQ--RLELLGRRTCPVAGAPAVAAASLQNAWPVYRELSGR 985 (1062)
T ss_pred HHHHHHhHhhHHHHHHHHHHHHHhhhccccchhhcchhHHHH--HHHHhcccCCcchhhhhhhhhhccccchhhhhhhhh
Confidence 33322 112222 25578999999999999999999999999 888888875432333556899999999999999999
Q ss_pred HhhhhHHHHHHHHHhhHHHHhhhh
Q 003820 540 KNIKYSSIMIQSVIRGWLVRRCSG 563 (793)
Q Consensus 540 ~~~r~aai~IQs~~Rg~~aRr~~~ 563 (793)
...+++.+.+|+.+++...+..+.
T Consensus 986 ~~~~~s~~~~~~~~~~~~~~~~~~ 1009 (1062)
T KOG4229|consen 986 LGLRRSFIADQSPRSRPAYTMIFA 1009 (1062)
T ss_pred HHHhhhhcchhcccccchhhhhHH
Confidence 999999999999999887666654
No 23
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=98.11 E-value=4.8e-05 Score=90.99 Aligned_cols=73 Identities=27% Similarity=0.300 Sum_probs=62.8
Q ss_pred ccccchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHhhhhHHHHHHHHHhhHHHHhhhhhhhhh
Q 003820 492 ELRRGIVALQSFIRGEKIRKEYALVLQRHRAAVVIQRQIKSRVARQKLKNIKYSSIMIQSVIRGWLVRRCSGDICLL 568 (793)
Q Consensus 492 ~~~~a~i~IQs~~Rg~~aRr~~~~l~~~~~AAi~IQ~~~R~~~~R~~~~~~r~aai~IQs~~Rg~~aRr~~~~l~~~ 568 (793)
-+..+++.||+.+|||+.|+.|..++ .+++.||+.+||+++|+... ...|++.||..+|++..|+.|..++..
T Consensus 671 vl~~~~~~iq~~~r~~~~r~~f~~~r---~~~~~~Q~~~rG~~~r~~~~-~~~aai~~q~~~r~~~~r~~y~~~~~~ 743 (862)
T KOG0160|consen 671 VLSAAKVLIQRQIRGYLARKKFLQLR---SAVIIIQAYSRGVLARRETE-REAAAIGIQKECRSYLNRRRYRALIPA 743 (862)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhhhhHHHHHHhhH-HHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 34457788999999999999997766 79999999999999998444 667999999999999999999876553
No 24
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=98.06 E-value=0.0007 Score=87.49 Aligned_cols=514 Identities=16% Similarity=0.145 Sum_probs=240.7
Q ss_pred HHHHHHHHhCCCHHHHHHHHccce--eeecCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCcce
Q 003820 77 GLITVAKLIGCDIGELKLALSTRK--MRVGNDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRS 154 (793)
Q Consensus 77 ~l~~~a~LLgv~~~~L~~~L~~~~--i~~~~e~i~~~lt~~qA~~~rdaLak~LY~rLF~wlV~~IN~~l~~~~~~~~~~ 154 (793)
.+..+=..||+++++...++..-. +..|+-.+...-..+||.-.....|-.+- .|+..=+.-...++..+. ...
T Consensus 324 ~t~~a~~ilgfs~~E~~~~~~i~sailhlGn~~f~~~~~~~qa~~~~~~~a~ka~-~llg~~~~~~~~al~~pr---iKv 399 (1930)
T KOG0161|consen 324 ETDEAMDILGFSEEEKISIFRIVSAILHLGNIKFKQEPREEQAEFDNTEVADKAC-HLLGINVEEFLKALLRPR---IKV 399 (1930)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHhcchhhhccccccccCCCCchHHHHHH-HHcCCCHHHHHHHhcccc---eec
Confidence 356667899999998887753222 23454444333345555433333332221 122222333333333221 224
Q ss_pred eEEeecCCCccCCCCChhHHHHHHhhHHHHHHHHHHhhHHHHHHHhhcCCcccccccCCchhHHHhhhcCCCcccccccc
Q 003820 155 ISILDIYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEKKPLGLLSLLDE 234 (793)
Q Consensus 155 IgILDI~GFE~f~~NsfEQlcINyaNEkLq~~f~~~~f~~eqeeY~~EgI~w~~i~f~dN~~~ldLie~kp~Gil~lLDe 234 (793)
.+-.++.|+.. +| .++|=+-|....++.+|.. ...+...+++|+ .+-..+|.+++-...-||..
T Consensus 400 g~e~v~k~q~~------~q--~~~~v~alAk~lYerlF~w-lV~riN~sld~~----~~~~~fIgvLDiaGFEIfe~--- 463 (1930)
T KOG0161|consen 400 GREWVSKAQNV------EQ--VLFAVEALAKALYERLFGW-LVKRINKSLDSK----QQRDYFIGVLDIAGFEIFEF--- 463 (1930)
T ss_pred cchhhhhcchH------HH--HHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhc----cccCCcceeeeeccccccCc---
Confidence 44566666643 34 7778888888777778765 677888888887 45555666666543333322
Q ss_pred ccCCCCCCcHH----H-HHHHHHHcCCCCccccC-----CCCCcEEEecCccccccccchhhhccccccHHHHHHHh---
Q 003820 235 ESTFPNGTDLT----F-ANKLKQHLNSNPCFRGE-----RDKSFTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLS--- 301 (793)
Q Consensus 235 e~~~p~~tD~~----f-~~kl~~~~~~~~~~~~~-----~~~~F~I~HyaG~V~Y~v~gfleKN~D~l~~~~~~ll~--- 301 (793)
.+=+- | .+||++.++.|..+.-. -+-.|..-||+=+ .=.+.+-|+|=. -++.+|.
T Consensus 464 ------nSFEQLciNytnEkLQqfFnh~mFvlEqeeY~~EgIew~fidfG~D-lq~~idLIEkp~-----Gi~slLdEEc 531 (1930)
T KOG0161|consen 464 ------NSFEQLCINYTNEKLQQFFNHHMFVLEQEEYQREGIEWDFIDFGLD-LQPTIDLIEKPM-----GILSLLDEEC 531 (1930)
T ss_pred ------CCHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHhCCceeeeccccc-hhhhHHHHhchh-----hHHHHHHHHH
Confidence 11111 1 25666666544332211 1456888888222 122334444411 2222221
Q ss_pred ---hcC-CchH-HHhhhcccccCCCCccCCCccCCCCCCCCccHHHHHHHHHHHHHHHHhccCCeeeeecCCCCCCCCCc
Q 003820 302 ---SCS-CHLP-QIFASNMLSQSNKPVVGPLYKAGGADSQKLSVATKFKGQLFQLMQRLESTTPHFIRCIKPNNFQSPGL 376 (793)
Q Consensus 302 ---~S~-~~~~-~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~f~~~L~~Lm~~L~~t~~hfIrCIkPN~~~~p~~ 376 (793)
+++ ..|+ +++....+.. | ..+++. ..+....+....-+.+ |+|.-|+-..++..
T Consensus 532 ~~PkAtd~tf~~kL~~~~~gk~---~-----------~f~~~k-----~~~~~~~F~l~HyaG~--V~Y~~~~WL~Knkd 590 (1930)
T KOG0161|consen 532 VVPKATDKTFLEKLCDQHLGKH---P-----------KFQKPK-----GKKAEAHFALVHYAGT--VDYNVDGWLEKNKD 590 (1930)
T ss_pred hcCCCccchHHHHHHHHhhccC---c-----------cccCcc-----cccchhhhheeeecce--eccCccchhhcCCC
Confidence 222 2222 2332221100 0 011111 1112222222222223 99999999888888
Q ss_pred cchhHHHHHhhhhChhHHHHHHhcCCCCccChHHHHHHhhccccccCCC------CChHHHHHHHHHHcCCC-Ccceeec
Q 003820 377 YEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFLLLESVAS------QDPLSVSVAILHQFNIL-PEMYQVG 449 (793)
Q Consensus 377 fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~eF~~RY~~L~~~~~~~------~d~~~~~~~il~~~~~~-~~~~~vG 449 (793)
-....|+.+|+|++ .+.|.....| +..+..+..++.. ......+ .-.+...-.++..+.-. |...++
T Consensus 591 pln~~v~~ll~~s~-~~~v~~l~~~---~~~~~~~~~~~~~-~~~~K~g~F~Tvs~~~keql~~Lm~~l~~T~phFvRC- 664 (1930)
T KOG0161|consen 591 PLNDNVVSLLKQST-NKLVSSLFQD---YAGAAAAAKGGEA-LKKTKKGSFRTVSQLYKEQLNKLMTTLRSTHPHFVRC- 664 (1930)
T ss_pred CchHHHHHHHHhcc-cHHHHHHhhh---hhccchhhhhhhh-hcccCCcchhhHHHHHHHHHHHHHHHhccCCCceeEE-
Confidence 88899999999999 8888776665 6666666666654 2111110 01111122233332211 111111
Q ss_pred ceeeeee---ecc---cccccccccccchhhHhhhhhhcccccchhhcccc-------------------cchhhhh---
Q 003820 450 YTKLFFR---AGQ---IGMLEDTRNRTLHGILRVQSCFRGHQARLCLKELR-------------------RGIVALQ--- 501 (793)
Q Consensus 450 kTKVFlr---~~~---~~~LE~~R~~~l~aa~~IQ~~~Rg~~~R~~~~~~~-------------------~a~i~IQ--- 501 (793)
-|+.. .|. ..+|...|.-.+--.++| +-.||-.|..|...+ .+...|.
T Consensus 665 --iIPn~~K~~g~ld~~lvl~QLrcngVLEgIRi--cR~GfPnr~~~~eFrqRy~lla~~~~~~~~~d~k~~~~~~~~~l 740 (1930)
T KOG0161|consen 665 --IIPNEEKKPGKLDAPLVLNQLRCNGVLEGIRI--CRQGFPNRMPFQEFRQRYELLAADEPKKGFSDGKKACEKILEEL 740 (1930)
T ss_pred --eccCccccccccCHHHHHHHhhccCcHHHHHH--HHhhCccccchHHHHHhHHhhhhhhccccccccchhHHHHHHHH
Confidence 00000 000 111222221111111222 223444333222111 0111110
Q ss_pred -------------hHHH-HHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHhhh---hHHHHHHHHHhhHHH------
Q 003820 502 -------------SFIR-GEKIRKEYALVLQRHRAAVVIQRQIKSRVARQKLKNIK---YSSIMIQSVIRGWLV------ 558 (793)
Q Consensus 502 -------------s~~R-g~~aRr~~~~l~~~~~AAi~IQ~~~R~~~~R~~~~~~r---~aai~IQs~~Rg~~a------ 558 (793)
-++| |.+++-.=.+......-.+.+|+.+|||++|+.|.+.. .|+.+||..+|.|+.
T Consensus 741 ~~d~~lyriG~tKvFfkaGvla~LEe~Rd~~ls~ii~~fQA~~Rg~l~r~~~~kr~~~~~ai~~iQ~N~r~~~~lr~w~W 820 (1930)
T KOG0161|consen 741 LLDKNLYRIGHTKVFFKAGVLAHLEEMRDEKLSQIITLFQAAIRGYLARKEFKKRLQQLDAIKVIQRNIRAYLKLRTWPW 820 (1930)
T ss_pred hcccceEeecceeeeehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHH
Confidence 0111 23332211111123345788999999999999998764 488889988776654
Q ss_pred HhhhhhhhhhHh----HhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 003820 559 RRCSGDICLLKS----VESKGNDSDEVLVKASFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSM- 633 (793)
Q Consensus 559 Rr~~~~l~~~~~----~~~~~~~~~e~~~~~~~l~~lq~r~~~~e~~l~~~e~e~~~L~~~l~~~e~~~~ele~k~~~~- 633 (793)
-+.|.+++++.. ..+.....+++......+.+.+....+++.....+..+...|..+++.......+.++....+
T Consensus 821 ~~Lf~kvkPLL~~~~~ee~~~~~~~e~~~l~~~l~~~e~~~~ele~~~~~~~~e~~~l~~~l~~e~~~~~~aee~~~~~~ 900 (1930)
T KOG0161|consen 821 WRLFTKVKPLLKVTKTEEEMRAKEEEIQKLKEELQKSESKRKELEEKLVKLLEEKNDLQEQLQAEKENLAEAEELLERLR 900 (1930)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556666543 111122223333333444444444444444445555566666666655554444444433333
Q ss_pred --HHHHHHHHHHHHHHHHHHHH
Q 003820 634 --EEVWQKQMRSLQSSLSIAKK 653 (793)
Q Consensus 634 --ee~~qkq~~~lq~~L~a~~~ 653 (793)
...++..+..+..++.....
T Consensus 901 ~~k~~le~~l~~~~~~~e~~ee 922 (1930)
T KOG0161|consen 901 AEKQELEKELKELKERLEEEEE 922 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455555544444
No 25
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=97.85 E-value=1.4e-05 Score=95.42 Aligned_cols=97 Identities=25% Similarity=0.307 Sum_probs=75.3
Q ss_pred chhhHhhhhhhcccccchhhcccccchhhhhhHHHHHHHHHHHHHHH-------h-----------------------HH
Q 003820 471 LHGILRVQSCFRGHQARLCLKELRRGIVALQSFIRGEKIRKEYALVL-------Q-----------------------RH 520 (793)
Q Consensus 471 l~aa~~IQ~~~Rg~~~R~~~~~~~~a~i~IQs~~Rg~~aRr~~~~l~-------~-----------------------~~ 520 (793)
..++..||..+|+|..|+.|..++.-++.||+.+||+..|+.|.++- + ..
T Consensus 810 ~~aa~~iq~~f~~yk~r~~~l~tr~p~v~iqa~~rg~q~r~dy~ki~wSv~~lek~~lrwR~k~~g~Rgfk~~~~~e~~~ 889 (975)
T KOG0520|consen 810 PAAASRIQKKFRGYKQRKEFLSTRQPIVKIQAAVRGYQVRKDYRKITWSVGVLEKLILRWRRKGKGFRGFKGRALFEEQE 889 (975)
T ss_pred hhHHHHhhhhhhhHHhhhhhcccCCccccchhhhhchhHhhhhheechhhhHHHHHHHHHHHhhhhhcccccccchhccc
Confidence 35678999999999999999999999999999999999999995431 1 22
Q ss_pred HHHHHHHHHhhhHHHH--HHHHhhhhHHHHHHHHHhhHHHHhhhhhhhh
Q 003820 521 RAAVVIQRQIKSRVAR--QKLKNIKYSSIMIQSVIRGWLVRRCSGDICL 567 (793)
Q Consensus 521 ~AAi~IQ~~~R~~~~R--~~~~~~r~aai~IQs~~Rg~~aRr~~~~l~~ 567 (793)
.||+.||..+|-|+.- ..|.++-+|+++||+.+|.+.++.+|+++..
T Consensus 890 ~a~t~~e~~yd~yKq~~~~~~~r~~~A~~~VQsm~rs~~a~qqyrR~~~ 938 (975)
T KOG0520|consen 890 TAATVIEDCYDFYKQLRKQTEERLTRAVVRVQSMFRSPKAQQQYRRLLL 938 (975)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 2566666666666655 4566667788888888888888877775544
No 26
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=97.20 E-value=0.00042 Score=44.04 Aligned_cols=19 Identities=32% Similarity=0.546 Sum_probs=10.7
Q ss_pred HHHHHHHHHhhhHHHHHHH
Q 003820 521 RAAVVIQRQIKSRVARQKL 539 (793)
Q Consensus 521 ~AAi~IQ~~~R~~~~R~~~ 539 (793)
.||++||++||||++|+.|
T Consensus 2 ~aai~iQ~~~R~~~~Rk~~ 20 (21)
T PF00612_consen 2 KAAIIIQSYWRGYLARKRY 20 (21)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 3555555555555555554
No 27
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]
Probab=97.07 E-value=0.0027 Score=78.38 Aligned_cols=91 Identities=25% Similarity=0.277 Sum_probs=69.8
Q ss_pred Hhhhhhhcccccchhhccc-------ccchhhhhhHHHHHHH---HHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHhhh-
Q 003820 475 LRVQSCFRGHQARLCLKEL-------RRGIVALQSFIRGEKI---RKEYALVLQRHRAAVVIQRQIKSRVARQKLKNIK- 543 (793)
Q Consensus 475 ~~IQ~~~Rg~~~R~~~~~~-------~~a~i~IQs~~Rg~~a---Rr~~~~l~~~~~AAi~IQ~~~R~~~~R~~~~~~r- 543 (793)
.++|+..||+..|..+... .-.+.-||+.|||++. +..|. .....-++.+|++.||+..|+.|.+..
T Consensus 539 ~~~qa~~rg~~~r~~~~~~~~fl~~~~P~~~diq~~vr~~~~~~~~~~~~--~~~~~evv~~qs~~R~~lsrk~~~~~~q 616 (1401)
T KOG2128|consen 539 LRIQASERGFSTRNKFRSRLDFLKKQTPFVVDIQALVRGILQYIPRDVYL--DSAKKEVVKFQSLTRGALSRKKYSRKLQ 616 (1401)
T ss_pred hhhhhhccccchHHHHHhhhhHHHhcCchHHHHHHHHHHHhhhchHHHHH--HHhhHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 4559999999988876543 2467889999999984 22221 113356899999999999999887654
Q ss_pred ------hHHHHHHHHHhhHHHHhhhhhhhh
Q 003820 544 ------YSSIMIQSVIRGWLVRRCSGDICL 567 (793)
Q Consensus 544 ------~aai~IQs~~Rg~~aRr~~~~l~~ 567 (793)
.+++.||+.+|+...|..|+.+.-
T Consensus 617 ~~~~~~~~~i~iqs~~r~f~~r~~y~~L~~ 646 (1401)
T KOG2128|consen 617 YFKDNMTKIIKIQSKIRKFPNRKDYKLLFT 646 (1401)
T ss_pred HHHHhhhhHHHHHHHHHhcccchHHHHHhc
Confidence 488999999999999999987754
No 28
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=96.83 E-value=0.04 Score=68.98 Aligned_cols=99 Identities=21% Similarity=0.219 Sum_probs=85.3
Q ss_pred chhhHhhhhhhcccccchhhcccccchhhhh-hHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHhhhhHHHHH
Q 003820 471 LHGILRVQSCFRGHQARLCLKELRRGIVALQ-SFIRGEKIRKEYALVLQRHRAAVVIQRQIKSRVARQKLKNIKYSSIMI 549 (793)
Q Consensus 471 l~aa~~IQ~~~Rg~~~R~~~~~~~~a~i~IQ-s~~Rg~~aRr~~~~l~~~~~AAi~IQ~~~R~~~~R~~~~~~r~aai~I 549 (793)
...++.+|..|+....|..|+.....++.+| ..+|....+....... .+.|++.+|+.||.+..+++|..+.+.++.+
T Consensus 793 ~~~~~~l~~~~~~~~~r~~~~~~~~~i~~lq~~i~~~~~~~~~~e~~~-~~~~~~L~~~~~rs~~~~kr~~~L~k~~i~~ 871 (1463)
T COG5022 793 WRLFIKLQPLLSLLGSRKEYRSYLACIIKLQKTIKREKKLRETEEVEF-SLKAEVLIQKFGRSLKAKKRFSLLKKETIYL 871 (1463)
T ss_pred HHhHHHhhHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHHHhhhhhHHHHHhhhHHHHH
Confidence 3577899999999999999999999999999 7777776666544333 5679999999999999999999999999999
Q ss_pred HHHHhhHHHHhhhhhhhhhHh
Q 003820 550 QSVIRGWLVRRCSGDICLLKS 570 (793)
Q Consensus 550 Qs~~Rg~~aRr~~~~l~~~~~ 570 (793)
|+.+|.-.|++++..++...+
T Consensus 872 ~~~~r~~~a~r~~~e~k~~~~ 892 (1463)
T COG5022 872 QSAQRVELAERQLQELKIDVK 892 (1463)
T ss_pred HHHHHHHHHHHHHHHHHHhHH
Confidence 999999999999987765443
No 29
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=96.78 E-value=0.0015 Score=41.52 Aligned_cols=21 Identities=38% Similarity=0.588 Sum_probs=18.7
Q ss_pred hhHHHHHHHHHhhHHHHhhhh
Q 003820 543 KYSSIMIQSVIRGWLVRRCSG 563 (793)
Q Consensus 543 r~aai~IQs~~Rg~~aRr~~~ 563 (793)
+++++.||+.||||++|+.|+
T Consensus 1 ~~aai~iQ~~~R~~~~Rk~~k 21 (21)
T PF00612_consen 1 RKAAIIIQSYWRGYLARKRYK 21 (21)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcC
Confidence 368999999999999999874
No 30
>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=96.66 E-value=0.0029 Score=72.86 Aligned_cols=60 Identities=23% Similarity=0.158 Sum_probs=47.6
Q ss_pred ccchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHhhhhHHHHHHHHHhhHHHHhhhhh
Q 003820 494 RRGIVALQSFIRGEKIRKEYALVLQRHRAAVVIQRQIKSRVARQKLKNIKYSSIMIQSVIRGWLVRRCSGD 564 (793)
Q Consensus 494 ~~a~i~IQs~~Rg~~aRr~~~~l~~~~~AAi~IQ~~~R~~~~R~~~~~~r~aai~IQs~~Rg~~aRr~~~~ 564 (793)
..-++.||..|||+++|.+|.+++ .++++|+ |||.|+. +..+..||..+||+..++.|++
T Consensus 696 ~~lvtllQK~~RG~~~R~ry~rmk---a~~~ii~-wyR~~K~-------ks~v~el~~~~rg~k~~r~ygk 755 (1001)
T KOG0164|consen 696 PSLVTLLQKAWRGWLARQRYRRMK---ASATIIR-WYRRYKL-------KSYVQELQRRFRGAKQMRDYGK 755 (1001)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH-HHHHHHH-------HHHHHHHHHHHHhhhhccccCC
Confidence 346789999999999999998776 4666666 8885543 4567788999999999998864
No 31
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=96.06 E-value=0.0097 Score=71.97 Aligned_cols=50 Identities=24% Similarity=0.339 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHhhhhHHHHHHHHHhhHHHHhhhhhhhhh
Q 003820 519 RHRAAVVIQRQIKSRVARQKLKNIKYSSIMIQSVIRGWLVRRCSGDICLL 568 (793)
Q Consensus 519 ~~~AAi~IQ~~~R~~~~R~~~~~~r~aai~IQs~~Rg~~aRr~~~~l~~~ 568 (793)
...||..||..+|+|+.|+.|...+..++.||+++||+..|+.|+++-+.
T Consensus 809 ~~~aa~~iq~~f~~yk~r~~~l~tr~p~v~iqa~~rg~q~r~dy~ki~wS 858 (975)
T KOG0520|consen 809 DPAAASRIQKKFRGYKQRKEFLSTRQPIVKIQAAVRGYQVRKDYRKITWS 858 (975)
T ss_pred chhHHHHhhhhhhhHHhhhhhcccCCccccchhhhhchhHhhhhheechh
Confidence 34589999999999999999999999999999999999999999887654
No 32
>PTZ00014 myosin-A; Provisional
Probab=95.93 E-value=0.015 Score=71.05 Aligned_cols=41 Identities=22% Similarity=0.167 Sum_probs=38.3
Q ss_pred HHHHHHHHHhhhHHHHHHHHhhhhHHHHHHHHHhhHHHHhh
Q 003820 521 RAAVVIQRQIKSRVARQKLKNIKYSSIMIQSVIRGWLVRRC 561 (793)
Q Consensus 521 ~AAi~IQ~~~R~~~~R~~~~~~r~aai~IQs~~Rg~~aRr~ 561 (793)
..++.||++||+|++|++|.+.+.++++||+.+|+|++++.
T Consensus 778 ~~~~~iq~~~r~~~~r~~~~~~~~~~~~iQ~~~R~~l~~~~ 818 (821)
T PTZ00014 778 PLVSVLEALILKIKKKRKVRKNIKSLVRIQAHLRRHLVIAE 818 (821)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 57899999999999999999999999999999999998875
No 33
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=95.71 E-value=0.012 Score=39.51 Aligned_cols=19 Identities=37% Similarity=0.600 Sum_probs=13.4
Q ss_pred HHHHHHHHHhhhHHHHHHH
Q 003820 521 RAAVVIQRQIKSRVARQKL 539 (793)
Q Consensus 521 ~AAi~IQ~~~R~~~~R~~~ 539 (793)
.+|+.||++||||++|+.|
T Consensus 4 ~aa~~IQa~~Rg~~~r~~y 22 (26)
T smart00015 4 RAAIIIQAAWRGYLARKRY 22 (26)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 4677777777777777766
No 34
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=95.54 E-value=0.0088 Score=40.08 Aligned_cols=20 Identities=35% Similarity=0.514 Sum_probs=16.6
Q ss_pred ccchhhhhhHHHHHHHHHHH
Q 003820 494 RRGIVALQSFIRGEKIRKEY 513 (793)
Q Consensus 494 ~~a~i~IQs~~Rg~~aRr~~ 513 (793)
..+++.||++|||+++|+.|
T Consensus 3 ~~aa~~IQa~~Rg~~~r~~y 22 (26)
T smart00015 3 TRAAIIIQAAWRGYLARKRY 22 (26)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 45688889999999988887
No 35
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]
Probab=94.94 E-value=0.31 Score=61.01 Aligned_cols=92 Identities=24% Similarity=0.242 Sum_probs=64.5
Q ss_pred hhhhhhcccccchhhccc-----ccchhhhhhHHHHHHHHHHHHHHH----hHHHHHHHHHHHhhhHHH----HHHHHhh
Q 003820 476 RVQSCFRGHQARLCLKEL-----RRGIVALQSFIRGEKIRKEYALVL----QRHRAAVVIQRQIKSRVA----RQKLKNI 542 (793)
Q Consensus 476 ~IQ~~~Rg~~~R~~~~~~-----~~a~i~IQs~~Rg~~aRr~~~~l~----~~~~AAi~IQ~~~R~~~~----R~~~~~~ 542 (793)
..|+..||...|.....+ ..-..++|+..||+..|-.+.... ........||+.|||++. .......
T Consensus 512 s~q~~v~~i~~~~~l~~~~~s~~~s~~~~~qa~~rg~~~r~~~~~~~~fl~~~~P~~~diq~~vr~~~~~~~~~~~~~~~ 591 (1401)
T KOG2128|consen 512 SLQALVRGIVLRSALFSLYPSLGKSEKLRIQASERGFSTRNKFRSRLDFLKKQTPFVVDIQALVRGILQYIPRDVYLDSA 591 (1401)
T ss_pred hHHHHhhhhHHHhhHHHHhhhhccccchhhhhhccccchHHHHHhhhhHHHhcCchHHHHHHHHHHHhhhchHHHHHHHh
Confidence 477777777766643222 233455699999999887775432 245678999999999984 1122334
Q ss_pred hhHHHHHHHHHhhHHHHhhhhhhhh
Q 003820 543 KYSSIMIQSVIRGWLVRRCSGDICL 567 (793)
Q Consensus 543 r~aai~IQs~~Rg~~aRr~~~~l~~ 567 (793)
..-++.+|+..||.++|+.+.+...
T Consensus 592 ~~evv~~qs~~R~~lsrk~~~~~~q 616 (1401)
T KOG2128|consen 592 KKEVVKFQSLTRGALSRKKYSRKLQ 616 (1401)
T ss_pred hHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 5689999999999999999865443
No 36
>KOG4229 consensus Myosin VII, myosin IXB and related myosins [Cell motility]
Probab=93.95 E-value=0.038 Score=68.57 Aligned_cols=170 Identities=16% Similarity=0.079 Sum_probs=115.9
Q ss_pred ccHHHHHHHHHHHHHHHHhccCCeeeeecCCCCCCCCCccchh-HHHHHhhhhChhHHHHHHhcCCCCccChHHHHHHhh
Q 003820 338 LSVATKFKGQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQG-LVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYG 416 (793)
Q Consensus 338 ~tv~~~f~~~L~~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~-~V~~QLr~~gvle~vri~r~Gyp~r~~~~eF~~RY~ 416 (793)
.+++.++.-++......|....+||.|||+||..-.+..++.. -...++...|...+....+.|+..++.|.+++..++
T Consensus 642 ~~~~~~~~~~~~~~~s~l~rg~~~~~~~i~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 721 (1062)
T KOG4229|consen 642 DKVLPEDRPSLFEELSALARGQDHFMRAISQNPRYALEQGSQERKGPRRLSSRGSTATPSHDRPGRKTNLLYSEVVNGRK 721 (1062)
T ss_pred ccccccCChhhhcchhhcCCCccchhhhhhcCchhhhhhcCcccCchhhhhhcccccCCCCCCccccccccchhhhcccc
Confidence 4566666778888888999999999999999999999999877 899999999999999999999999999999888776
Q ss_pred ccccccCCCCCh-HHHHHHHHHHcCCCCcceeecceeeeeeecccccccccccccchhhHhhhhhhcccccchhhcccc-
Q 003820 417 FLLLESVASQDP-LSVSVAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTRNRTLHGILRVQSCFRGHQARLCLKELR- 494 (793)
Q Consensus 417 ~L~~~~~~~~d~-~~~~~~il~~~~~~~~~~~vGkTKVFlr~~~~~~LE~~R~~~l~aa~~IQ~~~Rg~~~R~~~~~~~- 494 (793)
...-...+..+. ...|..++..- +-+++..+.++++.+..--..+.-.+.......+..|..++.|..+.++...+
T Consensus 722 ~~~y~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~e~~t~~~l~~~~kk~~~~~~~~~~~~~ 799 (1062)
T KOG4229|consen 722 NSEYLCSPRPDLAERARVQLLEKN--AINMKSERLTTLLPRYIPDPCLDPVRRERVTQLRLHQHKKKAFPQPLRSPQVRK 799 (1062)
T ss_pred cccccCCCCHHHHHHHHHHHHhhc--cccchhhhhcccccccCccccCCccccchhhhHHHHHhhccccCccccccchhh
Confidence 543221111121 22333444433 33678889999888765544444444444444556677776766666543322
Q ss_pred ---cchhhhhhHHHHHHH
Q 003820 495 ---RGIVALQSFIRGEKI 509 (793)
Q Consensus 495 ---~a~i~IQs~~Rg~~a 509 (793)
.....+|.-+++...
T Consensus 800 ~k~~~~~~~~~~~~~~~~ 817 (1062)
T KOG4229|consen 800 SKLESYLAIAKELFVRRF 817 (1062)
T ss_pred ccchhhhhhhhHHHHHHH
Confidence 134445554444333
No 37
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=89.66 E-value=35 Score=40.91 Aligned_cols=28 Identities=11% Similarity=0.177 Sum_probs=18.8
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHHh
Q 003820 27 RIVVEALDIVHVSKEDQESVFAMLAAVLWL 56 (793)
Q Consensus 27 ~~~~~Al~~lg~~~~~~~~if~ilaaILhL 56 (793)
+.+..|-..||+..++.. ..++|-|+.-
T Consensus 371 qsL~~~a~LLGld~~elr--~~L~aRvMqt 398 (1259)
T KOG0163|consen 371 QSLTIAAELLGLDQTELR--TGLCARVMQT 398 (1259)
T ss_pred hhHHHHHHHhCCCHHHHH--HHHHHHHHHh
Confidence 456778888999877643 3556666654
No 38
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=89.18 E-value=4.7 Score=42.49 Aligned_cols=40 Identities=28% Similarity=0.499 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 588 LAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYE 627 (793)
Q Consensus 588 l~~lq~r~~~~e~~l~~~e~e~~~L~~~l~~~e~~~~ele 627 (793)
+..|+.++.+.+.+|...+.|+.+|+.+|..+++.|.|-|
T Consensus 70 iRHLkakLkes~~~l~dRetEI~eLksQL~RMrEDWIEEE 109 (305)
T PF15290_consen 70 IRHLKAKLKESENRLHDRETEIDELKSQLARMREDWIEEE 109 (305)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555555555555555554433
No 39
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=87.72 E-value=5.6 Score=45.49 Aligned_cols=59 Identities=3% Similarity=0.123 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 003820 595 VLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSLSIAKKSLAI 657 (793)
Q Consensus 595 ~~~~e~~l~~~e~e~~~L~~~l~~~e~~~~ele~k~~~~ee~~qkq~~~lq~~L~a~~~sla~ 657 (793)
+.+.+.++.++|++++.|+++++.+.++..+++++++.++++. ..|+.++++++..+..
T Consensus 71 LteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~----~~Lk~Ql~a~~~~~~~ 129 (475)
T PRK13729 71 TTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDN----AALAEQVKALGANPVT 129 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH----HHHHHHHHhhhcCCCC
Confidence 3344556666677777777777777777888888888777766 6666777666665543
No 40
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=82.37 E-value=74 Score=34.63 Aligned_cols=58 Identities=17% Similarity=0.240 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhccc
Q 003820 600 AALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEV----WQKQMRSLQSSLSIAKKSLAI 657 (793)
Q Consensus 600 ~~l~~~e~e~~~L~~~l~~~e~~~~ele~k~~~~ee~----~qkq~~~lq~~L~a~~~sla~ 657 (793)
..+..++.+...++..|..+..+..++|..+...++. +.++|..|...-...+..|..
T Consensus 142 k~i~~Le~e~~~~q~~le~Lr~EKVdlEn~LE~EQE~lvN~L~Kqm~~l~~eKr~Lq~~l~~ 203 (310)
T PF09755_consen 142 KKIERLEKEKSAKQEELERLRREKVDLENTLEQEQEALVNRLWKQMDKLEAEKRRLQEKLEQ 203 (310)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3344444444555666677777777777777665554 557776666666666555543
No 41
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=82.20 E-value=55 Score=37.32 Aligned_cols=39 Identities=10% Similarity=0.049 Sum_probs=25.0
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHH
Q 003820 501 QSFIRGEKIRKEYALVLQRHRAAVVIQRQIKSRVARQKLK 540 (793)
Q Consensus 501 Qs~~Rg~~aRr~~~~l~~~~~AAi~IQ~~~R~~~~R~~~~ 540 (793)
+.++--+..=.++.+.. ++.||-++|..|.-|+..+.+.
T Consensus 346 EKhVhNFMmDtqLTk~~-KnAAA~VLqeTW~i~K~trl~~ 384 (489)
T KOG3684|consen 346 EKHVHNFMMDTQLTKEH-KNAAANVLQETWLIYKHTKLVS 384 (489)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhhc
Confidence 44444444444443333 5679999999998888776653
No 42
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=78.54 E-value=21 Score=37.94 Aligned_cols=60 Identities=15% Similarity=0.313 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 586 SFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQ 645 (793)
Q Consensus 586 ~~l~~lq~r~~~~e~~l~~~e~e~~~L~~~l~~~e~~~~ele~k~~~~ee~~qkq~~~lq 645 (793)
..+..|...+.+......++.+++.+++.++..++.++.+++.++.+-.+.+.++++.++
T Consensus 52 ~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAmq 111 (265)
T COG3883 52 NEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARAMQ 111 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455555555555555555555555555555555555555555544444444
No 43
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=78.29 E-value=29 Score=28.80 Aligned_cols=55 Identities=13% Similarity=0.155 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 589 AELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRS 643 (793)
Q Consensus 589 ~~lq~r~~~~e~~l~~~e~e~~~L~~~l~~~e~~~~ele~k~~~~ee~~qkq~~~ 643 (793)
..|+.++..+-....++..||..|.+++...+.++..+.+++..-....+..++.
T Consensus 3 ~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~R 57 (65)
T TIGR02449 3 QALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITR 57 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456677777777778888888888888888877777777766655555444433
No 44
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=78.10 E-value=42 Score=28.51 Aligned_cols=40 Identities=15% Similarity=0.281 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 590 ELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQK 629 (793)
Q Consensus 590 ~lq~r~~~~e~~l~~~e~e~~~L~~~l~~~e~~~~ele~k 629 (793)
.|+.++..+-..+..+..|+.+|+++...+.....+++..
T Consensus 8 ~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~e 47 (72)
T PF06005_consen 8 QLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEE 47 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444433
No 45
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=76.80 E-value=40 Score=28.60 Aligned_cols=52 Identities=19% Similarity=0.236 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 586 SFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVW 637 (793)
Q Consensus 586 ~~l~~lq~r~~~~e~~l~~~e~e~~~L~~~l~~~e~~~~ele~k~~~~ee~~ 637 (793)
..+..|+.++.+++.+..++.+++..|.++++++..+......++.++-..+
T Consensus 18 eti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl 69 (72)
T PF06005_consen 18 ETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGKL 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455566666777777777777777777777777766666666665554443
No 46
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=76.48 E-value=35 Score=38.58 Aligned_cols=73 Identities=23% Similarity=0.276 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 003820 583 VKASFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSLSIAKKSL 655 (793)
Q Consensus 583 ~~~~~l~~lq~r~~~~e~~l~~~e~e~~~L~~~l~~~e~~~~ele~k~~~~ee~~qkq~~~lq~~L~a~~~sl 655 (793)
.....+..++.++.+...++...++++..|.+....-....++++++.+......++++.+||++|...---+
T Consensus 379 ~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQlrDlmf~l 451 (493)
T KOG0804|consen 379 IVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREKEALGSKDEKITDLQEQLRDLMFFL 451 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHheeh
Confidence 3444556666677777777777777788887777777777777777777777777777888888776554433
No 47
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=75.59 E-value=41 Score=30.45 Aligned_cols=55 Identities=20% Similarity=0.204 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 583 VKASFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVW 637 (793)
Q Consensus 583 ~~~~~l~~lq~r~~~~e~~l~~~e~e~~~L~~~l~~~e~~~~ele~k~~~~ee~~ 637 (793)
++...+-+-+.+...+...|.+++..+..+++++..+.=+...|+.|+..+.+++
T Consensus 16 vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El 70 (102)
T PF10205_consen 16 VLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEEL 70 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444445555566666666666666666666666666666666665555544
No 48
>PRK11637 AmiB activator; Provisional
Probab=75.09 E-value=29 Score=39.73 Aligned_cols=17 Identities=18% Similarity=0.294 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 003820 615 RLQQYESRWSEYEQKMK 631 (793)
Q Consensus 615 ~l~~~e~~~~ele~k~~ 631 (793)
++...+.++.+++..+.
T Consensus 97 ~i~~~~~ei~~l~~eI~ 113 (428)
T PRK11637 97 TLNQLNKQIDELNASIA 113 (428)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 49
>KOG0942 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=73.92 E-value=4.1 Score=49.40 Aligned_cols=40 Identities=18% Similarity=0.116 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHhhhh
Q 003820 505 RGEKIRKEYALVLQRHRAAVVIQRQIKSRVARQKLKNIKY 544 (793)
Q Consensus 505 Rg~~aRr~~~~l~~~~~AAi~IQ~~~R~~~~R~~~~~~r~ 544 (793)
|....|++-++.+++.++|+++|+.|||+++|++.+..-+
T Consensus 14 r~~~er~kRee~rk~e~~av~vQs~~Rg~~~r~~~~~~~R 53 (1001)
T KOG0942|consen 14 RAAEERHKREEERKQEKNAVKVQSFWRGFRVRHNQKLLFR 53 (1001)
T ss_pred HHHHHHHhhHHHHHHhccchHHHHHHHHHHHHHHHHHHHH
Confidence 3345566666666677888999999999988888766543
No 50
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=72.31 E-value=64 Score=33.14 Aligned_cols=36 Identities=28% Similarity=0.316 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 596 LKAEAALREKEEENDILHQRLQQYESRWSEYEQKMK 631 (793)
Q Consensus 596 ~~~e~~l~~~e~e~~~L~~~l~~~e~~~~ele~k~~ 631 (793)
.++-.++.+++.+..+++++|..++.+.+.++++.+
T Consensus 152 eeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~ 187 (290)
T COG4026 152 EELLKELEELEAEYEEVQERLKRLEVENSRLEEMLK 187 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444444444433
No 51
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=70.96 E-value=42 Score=34.39 Aligned_cols=10 Identities=10% Similarity=0.414 Sum_probs=4.3
Q ss_pred cceeecceee
Q 003820 444 EMYQVGYTKL 453 (793)
Q Consensus 444 ~~~~vGkTKV 453 (793)
..|-+-.|.|
T Consensus 33 ~eYnITisSI 42 (290)
T COG4026 33 SEYNITISSI 42 (290)
T ss_pred ccceeEEEee
Confidence 3444444443
No 52
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=70.53 E-value=51 Score=31.84 Aligned_cols=63 Identities=25% Similarity=0.470 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Q 003820 590 ELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEV---WQKQMRSLQSSLSIAK 652 (793)
Q Consensus 590 ~lq~r~~~~e~~l~~~e~e~~~L~~~l~~~e~~~~ele~k~~~~ee~---~qkq~~~lq~~L~a~~ 652 (793)
.+.+++..++.++...+..+....+.|.+......+++.++..++.. |...+..+......++
T Consensus 77 ~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~k~~~~k 142 (143)
T PF12718_consen 77 QLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEELEEKYKEAK 142 (143)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhc
Confidence 56677777777777777777777777777777777777777776654 5555566665555543
No 53
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=70.03 E-value=2.3e+02 Score=33.43 Aligned_cols=76 Identities=25% Similarity=0.308 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhccc
Q 003820 582 LVKASFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEV---WQKQMRSLQSSLSIAKKSLAI 657 (793)
Q Consensus 582 ~~~~~~l~~lq~r~~~~e~~l~~~e~e~~~L~~~l~~~e~~~~ele~k~~~~ee~---~qkq~~~lq~~L~a~~~sla~ 657 (793)
..+...+.++..++.+.+..+....++.......+..++++...+..+.+.++++ +.++...|..+|..+++.+..
T Consensus 116 ~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~ 194 (546)
T KOG0977|consen 116 TKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDD 194 (546)
T ss_pred HHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 3344444445555555555544445555555555555555555555555555554 445666677777777776654
No 54
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=69.98 E-value=1.3e+02 Score=30.48 Aligned_cols=33 Identities=9% Similarity=0.037 Sum_probs=17.6
Q ss_pred HHHHHHHhhhHHHHHHHHhhhhHHHHHHHHHhh
Q 003820 523 AVVIQRQIKSRVARQKLKNIKYSSIMIQSVIRG 555 (793)
Q Consensus 523 Ai~IQ~~~R~~~~R~~~~~~r~aai~IQs~~Rg 555 (793)
-++|.+.=||.+--+-....+...-.+|..+.+
T Consensus 74 QVTi~C~ERGlLL~rvrde~~~~l~~y~~l~~s 106 (189)
T PF10211_consen 74 QVTIDCPERGLLLLRVRDEYRMTLDAYQTLYES 106 (189)
T ss_pred HHHhCcHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366777777776554444444333334444443
No 55
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=69.86 E-value=1e+02 Score=30.36 Aligned_cols=53 Identities=19% Similarity=0.345 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 597 KAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSLSIAKK 653 (793)
Q Consensus 597 ~~e~~l~~~e~e~~~L~~~l~~~e~~~~ele~k~~~~ee~~qkq~~~lq~~L~a~~~ 653 (793)
.++.+...+++++.+|+.+++.++.+...++.+...+++.- ..|-.-|..+++
T Consensus 101 ~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY----~~L~~Im~RARk 153 (161)
T TIGR02894 101 ALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDY----QTLIDIMDRARK 153 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 44455566666666677777777766666666666666655 444455555555
No 56
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=69.84 E-value=1.8e+02 Score=36.05 Aligned_cols=73 Identities=21% Similarity=0.278 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 003820 583 VKASFLAELQRRVLKAEAALR----EKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSLSIAKKSL 655 (793)
Q Consensus 583 ~~~~~l~~lq~r~~~~e~~l~----~~e~e~~~L~~~l~~~e~~~~ele~k~~~~ee~~qkq~~~lq~~L~a~~~sl 655 (793)
.....+.+++-|+..+|++|. .....++.+++.+++.+....--|.....-...++..|..|+.+-+..+..+
T Consensus 973 mkqeelSe~qvRldmaEkkLss~~k~~~h~v~~~~ek~ee~~a~lr~Ke~efeetmdaLq~di~~lEsek~elKqrl 1049 (1243)
T KOG0971|consen 973 MKQEELSEAQVRLDLAEKKLSSAAKDADHRVEKVQEKLEETQALLRKKEKEFEETMDALQADIDQLESEKAELKQRL 1049 (1243)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHh
Confidence 344556677777777777775 3344555666666555544322222222222223334444444444444443
No 57
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=69.50 E-value=47 Score=34.37 Aligned_cols=30 Identities=23% Similarity=0.324 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 594 RVLKAEAALREKEEENDILHQRLQQYESRW 623 (793)
Q Consensus 594 r~~~~e~~l~~~e~e~~~L~~~l~~~e~~~ 623 (793)
|..+++-.++.+++|++.|+.+.+.+....
T Consensus 91 Rm~eme~~i~dL~een~~L~~en~~Lr~~n 120 (292)
T KOG4005|consen 91 RMEEMEYEIKDLTEENEILQNENDSLRAIN 120 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555554444444433
No 58
>PRK10884 SH3 domain-containing protein; Provisional
Probab=68.96 E-value=33 Score=35.29 Aligned_cols=53 Identities=19% Similarity=0.270 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 588 LAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQ 640 (793)
Q Consensus 588 l~~lq~r~~~~e~~l~~~e~e~~~L~~~l~~~e~~~~ele~k~~~~ee~~qkq 640 (793)
..+++.++...+..+.+++++|++|+++++..+.+..+++++...+......+
T Consensus 120 ~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~~~~ 172 (206)
T PRK10884 120 TAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTIIMQ 172 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666667777888888888888888888877777777766655433
No 59
>PRK09039 hypothetical protein; Validated
Probab=68.63 E-value=2e+02 Score=32.07 Aligned_cols=140 Identities=11% Similarity=0.047 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-
Q 003820 581 VLVKASFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSLSIAKKSLAIDD- 659 (793)
Q Consensus 581 ~~~~~~~l~~lq~r~~~~e~~l~~~e~e~~~L~~~l~~~e~~~~ele~k~~~~ee~~qkq~~~lq~~L~a~~~sla~~~- 659 (793)
+........+....+..+.+++..++..+..|+..|...+.+..+.+.++.+++..++..+...-.+|+..+..+-..-
T Consensus 125 L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~~~~~l~~~~~~~~~~l~ 204 (343)
T PRK09039 125 LDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQRVQELNRYRSEFFGRLR 204 (343)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3333444444455555666666666666666666666666666666666666666665555554445555555441100
Q ss_pred -cccccccCCCCCccccccccCCC-CCCCCCCCCCccCCCCcchhhhhHHHHHhhhcccccccceeeee
Q 003820 660 -SERNSDASVNASDEVEYSWDTGS-NCKGQESNGVRPMSAGLSVISRLAEEFDQRSQVFGDDAKFLVEV 726 (793)
Q Consensus 660 -~~~~~~~s~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~l~~e~~~~~q~~~~~~~~~~e~ 726 (793)
.....+...-.++ .+..++ ....+ ++..-.+.+...+..++..+.....-.+++....|.|
T Consensus 205 ~~~~~~~~iri~g~----~~~~~~~vlF~~--gsa~L~~~~~~~L~~ia~~l~~~~~~~p~~i~~~I~I 267 (343)
T PRK09039 205 EILGDREGIRIVGD----RFVFQSEVLFPT--GSAELNPEGQAEIAKLAAALIELAKEIPPEINWVLRV 267 (343)
T ss_pred HHhCCCCCcEEECC----EEEecCCceeCC--CCcccCHHHHHHHHHHHHHHHHhhhccCCcCCeeEEE
Confidence 0000000000011 011111 11111 1122224667778888888877654455666555555
No 60
>PRK09039 hypothetical protein; Validated
Probab=68.15 E-value=56 Score=36.38 Aligned_cols=39 Identities=10% Similarity=0.175 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 595 VLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSM 633 (793)
Q Consensus 595 ~~~~e~~l~~~e~e~~~L~~~l~~~e~~~~ele~k~~~~ 633 (793)
+..++..+..++.++...+++....+.++.+++.++...
T Consensus 146 I~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a 184 (343)
T PRK09039 146 IAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVA 184 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333344444444444444333
No 61
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=68.10 E-value=66 Score=34.97 Aligned_cols=18 Identities=11% Similarity=0.412 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 003820 340 VATKFKGQLFQLMQRLES 357 (793)
Q Consensus 340 v~~~f~~~L~~Lm~~L~~ 357 (793)
+...|...|..|-..|..
T Consensus 48 ~~~~ye~el~~lr~~id~ 65 (312)
T PF00038_consen 48 IKEMYEEELRELRRQIDD 65 (312)
T ss_dssp HHHHHHHHHHCHHHHHHH
T ss_pred cccchhhHHHHhHHhhhh
Confidence 556666666655555543
No 62
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=67.85 E-value=65 Score=35.06 Aligned_cols=70 Identities=14% Similarity=0.270 Sum_probs=51.5
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 576 NDSDEVLVKASFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQ 645 (793)
Q Consensus 576 ~~~~e~~~~~~~l~~lq~r~~~~e~~l~~~e~e~~~L~~~l~~~e~~~~ele~k~~~~ee~~qkq~~~lq 645 (793)
.+.++...+...+..|..++..++.++++.-.|+++|.+.|.........+...+..+.+.-..-+..|+
T Consensus 224 ~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~ 293 (306)
T PF04849_consen 224 RKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLH 293 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666777888889999999999999999999999998887776666666666666665543333333
No 63
>PRK11637 AmiB activator; Provisional
Probab=67.14 E-value=57 Score=37.40 Aligned_cols=50 Identities=12% Similarity=0.228 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 587 FLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEV 636 (793)
Q Consensus 587 ~l~~lq~r~~~~e~~l~~~e~e~~~L~~~l~~~e~~~~ele~k~~~~ee~ 636 (793)
.+..++.+..+++.++..++.++..+.+++...+.++.+++.++..++++
T Consensus 62 ~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~e 111 (428)
T PRK11637 62 SVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNAS 111 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444444444444444444444444433
No 64
>PRK10884 SH3 domain-containing protein; Provisional
Probab=66.26 E-value=68 Score=33.01 Aligned_cols=14 Identities=21% Similarity=0.401 Sum_probs=8.6
Q ss_pred ceeecceeeeeeec
Q 003820 445 MYQVGYTKLFFRAG 458 (793)
Q Consensus 445 ~~~vGkTKVFlr~~ 458 (793)
.|.--..-|++|.+
T Consensus 26 ~YIsD~l~v~lRsG 39 (206)
T PRK10884 26 RYVSDELNTYVRSG 39 (206)
T ss_pred EEEEcceeEEEEcC
Confidence 45555566677665
No 65
>KOG4427 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=66.09 E-value=75 Score=38.32 Aligned_cols=35 Identities=34% Similarity=0.451 Sum_probs=24.8
Q ss_pred HhHHHHHHHHHHHhhhHHHHHHHHhhhhHHHHHHHHHhhHH
Q 003820 517 LQRHRAAVVIQRQIKSRVARQKLKNIKYSSIMIQSVIRGWL 557 (793)
Q Consensus 517 ~~~~~AAi~IQ~~~R~~~~R~~~~~~r~aai~IQs~~Rg~~ 557 (793)
+++..||+.||++||+|++|++|. +.||.-|+..+
T Consensus 27 rrr~~aa~~iq~~lrsyl~Rkk~~------~~I~~e~d~~f 61 (1096)
T KOG4427|consen 27 RRREAAALFIQRVLRSYLVRKKAQ------IEIQEEFDNLF 61 (1096)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHhh
Confidence 345678999999999999888664 45665555443
No 66
>KOG4427 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=64.88 E-value=12 Score=44.74 Aligned_cols=39 Identities=13% Similarity=0.151 Sum_probs=27.3
Q ss_pred hhhhhhcccccchhhcccccchhhhhhHHHHHHHHHHHH
Q 003820 476 RVQSCFRGHQARLCLKELRRGIVALQSFIRGEKIRKEYA 514 (793)
Q Consensus 476 ~IQ~~~Rg~~~R~~~~~~~~a~i~IQs~~Rg~~aRr~~~ 514 (793)
.+++.-+..-.|..-++...+++.||++||||++|++|+
T Consensus 12 fl~k~~qeREer~~qrrr~~aa~~iq~~lrsyl~Rkk~~ 50 (1096)
T KOG4427|consen 12 FLAKVSQEREERSYQRRREAAALFIQRVLRSYLVRKKAQ 50 (1096)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355554444444444555678999999999999999764
No 67
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=64.80 E-value=51 Score=27.08 Aligned_cols=36 Identities=25% Similarity=0.341 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 602 LREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVW 637 (793)
Q Consensus 602 l~~~e~e~~~L~~~l~~~e~~~~ele~k~~~~ee~~ 637 (793)
|......+.....+|+..+.+..+++..+..+++.+
T Consensus 20 L~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ 55 (61)
T PF08826_consen 20 LTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEM 55 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444555555555555555555555554443
No 68
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=64.79 E-value=77 Score=36.03 Aligned_cols=73 Identities=15% Similarity=0.201 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003820 582 LVKASFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSLSIAKKS 654 (793)
Q Consensus 582 ~~~~~~l~~lq~r~~~~e~~l~~~e~e~~~L~~~l~~~e~~~~ele~k~~~~ee~~qkq~~~lq~~L~a~~~s 654 (793)
.........|+..+.+++.++..++.++.+....+..+++++.+++.++..++.+..++-..|-..|+++..+
T Consensus 55 ~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~r~qr~~La~~L~A~~r~ 127 (420)
T COG4942 55 REQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQEREQRRRLAEQLAALQRS 127 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444455566666666666666666666666777777777777777777777766656656666666665554
No 69
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=64.40 E-value=1.8e+02 Score=31.84 Aligned_cols=17 Identities=18% Similarity=0.319 Sum_probs=11.2
Q ss_pred HHHHHHHHHHhhhHHHH
Q 003820 520 HRAAVVIQRQIKSRVAR 536 (793)
Q Consensus 520 ~~AAi~IQ~~~R~~~~R 536 (793)
..|.-.+|..+|.-...
T Consensus 67 ~aa~~llq~kirk~~e~ 83 (401)
T PF06785_consen 67 TAAGQLLQTKIRKITEK 83 (401)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 35667788887765543
No 70
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=64.04 E-value=42 Score=41.08 Aligned_cols=19 Identities=32% Similarity=0.391 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 003820 618 QYESRWSEYEQKMKSMEEV 636 (793)
Q Consensus 618 ~~e~~~~ele~k~~~~ee~ 636 (793)
++...+.++|+|++.++++
T Consensus 452 qLtdknlnlEekVklLeet 470 (1243)
T KOG0971|consen 452 QLTDKNLNLEEKVKLLEET 470 (1243)
T ss_pred HHHhhccCHHHHHHHHHHH
Confidence 3344444555555554444
No 71
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=63.69 E-value=1.3e+02 Score=28.20 Aligned_cols=17 Identities=18% Similarity=0.440 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 003820 616 LQQYESRWSEYEQKMKS 632 (793)
Q Consensus 616 l~~~e~~~~ele~k~~~ 632 (793)
+..++.+..+++.|...
T Consensus 70 ~~~L~~el~~l~~ry~t 86 (120)
T PF12325_consen 70 VEELEQELEELQQRYQT 86 (120)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33334444444444433
No 72
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=63.58 E-value=73 Score=37.61 Aligned_cols=33 Identities=33% Similarity=0.528 Sum_probs=24.1
Q ss_pred CCCHHHHHHHHHhHHHHHhHHHHhhHHHHHH-Hhhhc
Q 003820 735 LNPDKELRRLKQMFEAWKKDYGSRLRETKVI-LNKLG 770 (793)
Q Consensus 735 ~~~~~el~~lk~~f~~wkk~~~~rlr~~~~~-~~~~~ 770 (793)
+...+|||+. .+.|+|.+..|-|+.|-. |.++.
T Consensus 609 vv~~eelr~~---~e~~~kr~ee~~r~~k~~~i~rii 642 (652)
T COG2433 609 VVDSEELRRA---IEEWKKRFEERERRQKEEDILRII 642 (652)
T ss_pred eecHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666654 789999999998887755 55553
No 73
>KOG0942 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=63.50 E-value=84 Score=38.78 Aligned_cols=35 Identities=23% Similarity=0.332 Sum_probs=26.7
Q ss_pred hHHHHHHHHhhhhHHHHHHHHHhhHHHHhhhhhhh
Q 003820 532 SRVARQKLKNIKYSSIMIQSVIRGWLVRRCSGDIC 566 (793)
Q Consensus 532 ~~~~R~~~~~~r~aai~IQs~~Rg~~aRr~~~~l~ 566 (793)
....|..-++..++++++|+.|||+++|+..+.+.
T Consensus 18 er~kRee~rk~e~~av~vQs~~Rg~~~r~~~~~~~ 52 (1001)
T KOG0942|consen 18 ERHKREEERKQEKNAVKVQSFWRGFRVRHNQKLLF 52 (1001)
T ss_pred HHHhhHHHHHHhccchHHHHHHHHHHHHHHHHHHH
Confidence 33445555666679999999999999999876543
No 74
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=63.41 E-value=1.4e+02 Score=30.35 Aligned_cols=57 Identities=28% Similarity=0.420 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 581 VLVKASFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVW 637 (793)
Q Consensus 581 ~~~~~~~l~~lq~r~~~~e~~l~~~e~e~~~L~~~l~~~e~~~~ele~k~~~~ee~~ 637 (793)
+..+...+..++.++..++.++.++..-++.++.++..+.-+...+|.++..++++-
T Consensus 118 l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En 174 (194)
T PF08614_consen 118 LAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEEN 174 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555566666666666666666666666666666666666666666666666554
No 75
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=63.23 E-value=1.1e+02 Score=29.44 Aligned_cols=13 Identities=23% Similarity=0.422 Sum_probs=8.3
Q ss_pred hhhhHHHHHhhhc
Q 003820 702 ISRLAEEFDQRSQ 714 (793)
Q Consensus 702 v~~l~~e~~~~~q 714 (793)
++.-|.+|+++.+
T Consensus 106 ~d~~ae~~eRkv~ 118 (143)
T PF12718_consen 106 ADVKAEHFERKVK 118 (143)
T ss_pred HHHHhHHHHHHHH
Confidence 4555666777666
No 76
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=62.64 E-value=96 Score=34.09 Aligned_cols=45 Identities=24% Similarity=0.275 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 583 VKASFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYE 627 (793)
Q Consensus 583 ~~~~~l~~lq~r~~~~e~~l~~~e~e~~~L~~~l~~~e~~~~ele 627 (793)
.....+..++....++.+++.+++.+.+++.+++..++.+..+++
T Consensus 47 ~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~ 91 (314)
T PF04111_consen 47 ELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELD 91 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555556666666666666666666666555554443
No 77
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=62.47 E-value=1.1e+02 Score=32.57 Aligned_cols=64 Identities=11% Similarity=0.200 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 588 LAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSLSIA 651 (793)
Q Consensus 588 l~~lq~r~~~~e~~l~~~e~e~~~L~~~l~~~e~~~~ele~k~~~~ee~~qkq~~~lq~~L~a~ 651 (793)
...++..+..+...+.+...+..+++.++.+.+.+...++.++...++....+-..|...+.+.
T Consensus 47 ~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAm 110 (265)
T COG3883 47 KKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARAM 110 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444445555555555555555544444444444444333
No 78
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=62.44 E-value=2.3e+02 Score=33.35 Aligned_cols=105 Identities=13% Similarity=0.183 Sum_probs=55.2
Q ss_pred HHHHHHhhhhHHHHHHHHHhhHHHHhhhhh--hhhhHhHhhhcCChhHHHHHHHHHHHHHHHHHHHHH----------HH
Q 003820 535 ARQKLKNIKYSSIMIQSVIRGWLVRRCSGD--ICLLKSVESKGNDSDEVLVKASFLAELQRRVLKAEA----------AL 602 (793)
Q Consensus 535 ~R~~~~~~r~aai~IQs~~Rg~~aRr~~~~--l~~~~~~~~~~~~~~e~~~~~~~l~~lq~r~~~~e~----------~l 602 (793)
-|+.+..++.-+.+.|++.-++..+++-.. +..++ .++....+++..++.....++. ++
T Consensus 264 lre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~---------~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dv 334 (581)
T KOG0995|consen 264 LREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLK---------SEIEEKEEEIEKLQKENDELKKQIELQGISGEDV 334 (581)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 455666666777777888777766655421 11111 1222233333333333333332 23
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 603 REKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSL 648 (793)
Q Consensus 603 ~~~e~e~~~L~~~l~~~e~~~~ele~k~~~~ee~~qkq~~~lq~~L 648 (793)
+.+..|..+|++.+...+.+...+..++-..+-+.+....+++..+
T Consensus 335 e~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l~~~~~f~~le~~~ 380 (581)
T KOG0995|consen 335 ERMNLERNKLKRELNKIQSELDRLSKEVWELKLEIEDFFKELEKKF 380 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 4455566666666666666666666666555555555555554443
No 79
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=62.22 E-value=87 Score=32.97 Aligned_cols=46 Identities=15% Similarity=0.299 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 591 LQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEV 636 (793)
Q Consensus 591 lq~r~~~~e~~l~~~e~e~~~L~~~l~~~e~~~~ele~k~~~~ee~ 636 (793)
|..+...++.+..+++.++..+..+++.++.++..+..++..++..
T Consensus 94 L~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~ 139 (239)
T COG1579 94 LNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKN 139 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444444444444444444433
No 80
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=61.25 E-value=2.6e+02 Score=30.75 Aligned_cols=40 Identities=25% Similarity=0.191 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 588 LAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYE 627 (793)
Q Consensus 588 l~~lq~r~~~~e~~l~~~e~e~~~L~~~l~~~e~~~~ele 627 (793)
-..++-.+..+..+.+++++|.+.|-++|.+.-+...++-
T Consensus 143 n~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq~L~ 182 (401)
T PF06785_consen 143 NQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQQELN 182 (401)
T ss_pred HHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445556666667777777777766666554444433
No 81
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=60.79 E-value=1.3e+02 Score=31.84 Aligned_cols=51 Identities=22% Similarity=0.202 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 587 FLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVW 637 (793)
Q Consensus 587 ~l~~lq~r~~~~e~~l~~~e~e~~~L~~~l~~~e~~~~ele~k~~~~ee~~ 637 (793)
.+..++.....++..+.+.++++.+|++++...+.-..++.--|..|.+.+
T Consensus 64 e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L 114 (251)
T PF11932_consen 64 EIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDEL 114 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444445555555555555555555555555454444444
No 82
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=59.06 E-value=38 Score=31.05 Aligned_cols=37 Identities=24% Similarity=0.249 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 586 SFLAELQRRVLKAEAALREKEEENDILHQRLQQYESR 622 (793)
Q Consensus 586 ~~l~~lq~r~~~~e~~l~~~e~e~~~L~~~l~~~e~~ 622 (793)
..+..+-..+.+++..+.++.+||+.|+-+++.+..+
T Consensus 15 ~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~ 51 (107)
T PF06156_consen 15 QQLGQLLEELEELKKQLQELLEENARLRIENEHLRER 51 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444444433
No 83
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=59.06 E-value=12 Score=42.00 Aligned_cols=31 Identities=26% Similarity=0.316 Sum_probs=20.0
Q ss_pred HHHHHHHHHhhhHHHHHHHHhhhhHHHHHHHH
Q 003820 521 RAAVVIQRQIKSRVARQKLKNIKYSSIMIQSV 552 (793)
Q Consensus 521 ~AAi~IQ~~~R~~~~R~~~~~~r~aai~IQs~ 552 (793)
+||+.||+|+|+|.+|...++. .+..+.|+.
T Consensus 18 kaAilIQkWYRr~~ARle~rrr-~twqIFqsl 48 (631)
T KOG0377|consen 18 KAAILIQKWYRRYEARLEARRR-CTWQIFQSL 48 (631)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-hHHHHHhHH
Confidence 4788888888888887765542 344444544
No 84
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=58.78 E-value=42 Score=38.58 Aligned_cols=55 Identities=18% Similarity=0.206 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 583 VKASFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVW 637 (793)
Q Consensus 583 ~~~~~l~~lq~r~~~~e~~l~~~e~e~~~L~~~l~~~e~~~~ele~k~~~~ee~~ 637 (793)
+..+.+.+-|.+..++|+++..++.|++.+..+++.++.++++++.....+++++
T Consensus 66 VnqSALteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 66 VRQHATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3344555555556666666666655555555555555655655555555555444
No 85
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=58.70 E-value=2.9e+02 Score=30.49 Aligned_cols=120 Identities=18% Similarity=0.165 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHhhhhHHHHHHHHHhhHHHHhhhhhhhhhHhHhhhcCChhHHHHHHHHHHHHHH----HHHHHHHHHHHH
Q 003820 530 IKSRVARQKLKNIKYSSIMIQSVIRGWLVRRCSGDICLLKSVESKGNDSDEVLVKASFLAELQR----RVLKAEAALREK 605 (793)
Q Consensus 530 ~R~~~~R~~~~~~r~aai~IQs~~Rg~~aRr~~~~l~~~~~~~~~~~~~~e~~~~~~~l~~lq~----r~~~~e~~l~~~ 605 (793)
||.-+.-.-...+....-.++.-..........-.--.-.-......-..++..+......+.. ++..+..++.+.
T Consensus 142 WR~~ll~gl~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~ 221 (325)
T PF08317_consen 142 WRMQLLEGLKEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQ 221 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 606 EEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSLSIAKK 653 (793)
Q Consensus 606 e~e~~~L~~~l~~~e~~~~ele~k~~~~ee~~qkq~~~lq~~L~a~~~ 653 (793)
..+++.++.++.+++.+..+++.++..+.+.. ..++.+++.+.+
T Consensus 222 ~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k----~~l~~eI~e~~~ 265 (325)
T PF08317_consen 222 KEEIEAKKKELAELQEELEELEEKIEELEEQK----QELLAEIAEAEK 265 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
No 86
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=58.69 E-value=2.4e+02 Score=29.69 Aligned_cols=68 Identities=16% Similarity=0.219 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 583 VKASFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSLSI 650 (793)
Q Consensus 583 ~~~~~l~~lq~r~~~~e~~l~~~e~e~~~L~~~l~~~e~~~~ele~k~~~~ee~~qkq~~~lq~~L~a 650 (793)
........+...+..+..+...++++...++.++...+....+++.......+...++...+..+-+.
T Consensus 100 ~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e~~~~~~~~~~~ 167 (239)
T COG1579 100 IAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIREEGQELSSKREE 167 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444455555556666666666666666666666655555554444444443333
No 87
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=57.56 E-value=67 Score=33.28 Aligned_cols=50 Identities=12% Similarity=0.170 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 588 LAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVW 637 (793)
Q Consensus 588 l~~lq~r~~~~e~~l~~~e~e~~~L~~~l~~~e~~~~ele~k~~~~ee~~ 637 (793)
..+++-.+..+..+-+.+..|++.|+....-+-.+..|+...+..+.+++
T Consensus 92 m~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l 141 (292)
T KOG4005|consen 92 MEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQEL 141 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 33444455556666666666666666666666666666666555544443
No 88
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=57.36 E-value=1.9e+02 Score=27.95 Aligned_cols=78 Identities=22% Similarity=0.217 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 003820 578 SDEVLVKASFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSLSIAKKSL 655 (793)
Q Consensus 578 ~~e~~~~~~~l~~lq~r~~~~e~~l~~~e~e~~~L~~~l~~~e~~~~ele~k~~~~ee~~qkq~~~lq~~L~a~~~sl 655 (793)
..++..+...+..+......++.++..+..+...|.+.++..+.+..+++....+....++......-......+.+.
T Consensus 51 k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~E~ek~q~~e~~~~~v 128 (140)
T PF10473_consen 51 KAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNSSLENLLQEKEQEKVQLKEESKSAV 128 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
No 89
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=57.35 E-value=2.2e+02 Score=28.81 Aligned_cols=23 Identities=22% Similarity=0.339 Sum_probs=15.0
Q ss_pred HHHHHHHHhhHHHHhhhhhhhhh
Q 003820 546 SIMIQSVIRGWLVRRCSGDICLL 568 (793)
Q Consensus 546 ai~IQs~~Rg~~aRr~~~~l~~~ 568 (793)
=|.|.|.=||-+--+....++..
T Consensus 74 QVTi~C~ERGlLL~rvrde~~~~ 96 (189)
T PF10211_consen 74 QVTIDCPERGLLLLRVRDEYRMT 96 (189)
T ss_pred HHHhCcHHHhHHHHHHHHHHHHH
Confidence 35678888888766655544443
No 90
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=56.92 E-value=1.5e+02 Score=33.40 Aligned_cols=58 Identities=19% Similarity=0.247 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhc
Q 003820 598 AEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQ----KQMRSLQSSLSIAKKSL 655 (793)
Q Consensus 598 ~e~~l~~~e~e~~~L~~~l~~~e~~~~ele~k~~~~ee~~q----kq~~~lq~~L~a~~~sl 655 (793)
+-..++.++.+-...+.-|+++..+..+++..+++++|.+- |.|..|..+-...++-|
T Consensus 163 lm~ki~Klen~t~~kq~~leQLRre~V~lentlEQEqEalvN~LwKrmdkLe~ekr~Lq~Kl 224 (552)
T KOG2129|consen 163 LMNKIRKLENKTLLKQNTLEQLRREAVQLENTLEQEQEALVNSLWKRMDKLEQEKRYLQKKL 224 (552)
T ss_pred HHHHHHHhhhhhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444444444444557788888888888887777522 55665555555555544
No 91
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=56.66 E-value=1.1e+02 Score=31.25 Aligned_cols=51 Identities=25% Similarity=0.352 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 587 FLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVW 637 (793)
Q Consensus 587 ~l~~lq~r~~~~e~~l~~~e~e~~~L~~~l~~~e~~~~ele~k~~~~ee~~ 637 (793)
.+..+..++..++.++..++.+.+.|.+++..++.++.++..+........
T Consensus 87 ~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~ev 137 (201)
T PF13851_consen 87 SLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEV 137 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555677777888888888999999999999999988888877655554
No 92
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=56.50 E-value=1.5e+02 Score=30.34 Aligned_cols=26 Identities=31% Similarity=0.474 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 598 AEAALREKEEENDILHQRLQQYESRW 623 (793)
Q Consensus 598 ~e~~l~~~e~e~~~L~~~l~~~e~~~ 623 (793)
+...+..++.++.+|+.++..++...
T Consensus 60 L~epL~~a~~e~~eL~k~L~~y~kdK 85 (201)
T PF13851_consen 60 LSEPLKKAEEEVEELRKQLKNYEKDK 85 (201)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444443333
No 93
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=56.08 E-value=4.2e+02 Score=32.57 Aligned_cols=31 Identities=29% Similarity=0.395 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 589 AELQRRVLKAEAALREKEEENDILHQRLQQY 619 (793)
Q Consensus 589 ~~lq~r~~~~e~~l~~~e~e~~~L~~~l~~~ 619 (793)
.+|+.++.+++.+++.+|+.+..|+.+++++
T Consensus 548 ~~lE~E~~~lr~elk~kee~~~~~e~~~~~l 578 (697)
T PF09726_consen 548 RQLESELKKLRRELKQKEEQIRELESELQEL 578 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555555555555555555555433
No 94
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=56.04 E-value=37 Score=32.26 Aligned_cols=52 Identities=27% Similarity=0.364 Sum_probs=42.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 578 SDEVLVKASFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQK 629 (793)
Q Consensus 578 ~~e~~~~~~~l~~lq~r~~~~e~~l~~~e~e~~~L~~~l~~~e~~~~ele~k 629 (793)
..++..+.+.+...+..+.++++++..+..|+..|+++|......+..++.|
T Consensus 79 ~a~~~e~qsli~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~~n~~Lekr 130 (131)
T PF04859_consen 79 AAEIQEQQSLIKTYEIVVKKLEAELRAKDSEIDRLREKLDELNRANKSLEKR 130 (131)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3456667777777788888999999999999999999999988888777765
No 95
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=55.93 E-value=1.8e+02 Score=27.30 Aligned_cols=49 Identities=18% Similarity=0.304 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 594 RVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMR 642 (793)
Q Consensus 594 r~~~~e~~l~~~e~e~~~L~~~l~~~e~~~~ele~k~~~~ee~~qkq~~ 642 (793)
++..++.++.+++.+...+-+-+.+...+..|++.-+..+.++.+.|+.
T Consensus 69 ~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~myr~Qi~ 117 (120)
T PF12325_consen 69 EVEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQDLKEMYREQID 117 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444455555555555555555544443
No 96
>PF15294 Leu_zip: Leucine zipper
Probab=55.07 E-value=1.4e+02 Score=32.11 Aligned_cols=77 Identities=18% Similarity=0.240 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHH
Q 003820 580 EVLVKASFLAELQRRVLKAEAALREKEEENDILHQRLQQYES----------------RWSEYEQKMKSMEEVWQKQMRS 643 (793)
Q Consensus 580 e~~~~~~~l~~lq~r~~~~e~~l~~~e~e~~~L~~~l~~~e~----------------~~~ele~k~~~~ee~~qkq~~~ 643 (793)
++..+..+-..++.|+..++......-+|...|+.+|..++. ...++|.+|..+..++++.+..
T Consensus 133 Ei~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~~~~~k~~~~~~~q~l~dLE~k~a~lK~e~ek~~~d 212 (278)
T PF15294_consen 133 EIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDEQGDQKGKKDLSFKAQDLSDLENKMAALKSELEKALQD 212 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccchhhHHHHHHHHHHHHHHHHHH
Confidence 344444444455555555555544444555666666665554 2345666666666665555555
Q ss_pred HHHHHHHHHHhcc
Q 003820 644 LQSSLSIAKKSLA 656 (793)
Q Consensus 644 lq~~L~a~~~sla 656 (793)
...++.+.+..|.
T Consensus 213 ~~~~~k~L~e~L~ 225 (278)
T PF15294_consen 213 KESQQKALEETLQ 225 (278)
T ss_pred HHHHHHHHHHHHH
Confidence 5444444444443
No 97
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=54.67 E-value=1.2e+02 Score=24.92 Aligned_cols=37 Identities=24% Similarity=0.360 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 590 ELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEY 626 (793)
Q Consensus 590 ~lq~r~~~~e~~l~~~e~e~~~L~~~l~~~e~~~~el 626 (793)
+.+.....++.+|.+.+..|.+|..++..++.+..++
T Consensus 22 kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~ 58 (61)
T PF08826_consen 22 KVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEEL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333444455555555555555555555555554443
No 98
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=53.57 E-value=1.3e+02 Score=33.39 Aligned_cols=23 Identities=22% Similarity=0.290 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHhccccc
Q 003820 637 WQKQMRSLQSSLSIAKKSLAIDD 659 (793)
Q Consensus 637 ~qkq~~~lq~~L~a~~~sla~~~ 659 (793)
+.+++++.+.+++..+.+++..+
T Consensus 361 L~keLeekkreleql~~q~~v~~ 383 (442)
T PF06637_consen 361 LAKELEEKKRELEQLKMQLAVKT 383 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Confidence 44444555555555555554433
No 99
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=53.11 E-value=92 Score=35.87 Aligned_cols=38 Identities=24% Similarity=0.274 Sum_probs=17.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 579 DEVLVKASFLAELQRRVLKAEAALREKEEENDILHQRL 616 (793)
Q Consensus 579 ~e~~~~~~~l~~lq~r~~~~e~~l~~~e~e~~~L~~~l 616 (793)
..++-+-..+.+++.++..+..+.+.+.+||+.|+++.
T Consensus 59 DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~ 96 (472)
T TIGR03752 59 DTLRTLVAEVKELRKRLAKLISENEALKAENERLQKRE 96 (472)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444444444444444444444444445555544433
No 100
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=52.93 E-value=2.2e+02 Score=27.43 Aligned_cols=55 Identities=25% Similarity=0.244 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 584 KASFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQ 638 (793)
Q Consensus 584 ~~~~l~~lq~r~~~~e~~l~~~e~e~~~L~~~l~~~e~~~~ele~k~~~~ee~~q 638 (793)
.......++..+..++..+..++.++...+.+...++.....++..++...++++
T Consensus 64 l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~ 118 (151)
T PF11559_consen 64 LRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQ 118 (151)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555555555555555555555556655555555553
No 101
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=52.72 E-value=61 Score=34.34 Aligned_cols=51 Identities=14% Similarity=0.195 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 580 EVLVKASFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKM 630 (793)
Q Consensus 580 e~~~~~~~l~~lq~r~~~~e~~l~~~e~e~~~L~~~l~~~e~~~~ele~k~ 630 (793)
-+.+..+.+.+...|..++|++++...+++..|+.++..+++....|=+|+
T Consensus 80 iLpIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKi 130 (248)
T PF08172_consen 80 ILPIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKI 130 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677888888889999999999999999999988888888765544443
No 102
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=52.03 E-value=61 Score=29.92 Aligned_cols=39 Identities=23% Similarity=0.184 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 585 ASFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRW 623 (793)
Q Consensus 585 ~~~l~~lq~r~~~~e~~l~~~e~e~~~L~~~l~~~e~~~ 623 (793)
...+..+...+..++..+.++.+||+.|+-+++.+..+.
T Consensus 14 e~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l 52 (110)
T PRK13169 14 EQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERL 52 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444555555555555555555544444433
No 103
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=51.65 E-value=1.3e+02 Score=33.45 Aligned_cols=59 Identities=20% Similarity=0.206 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Q 003820 595 VLKAEAALREKEEENDILHQRLQQYESRWSEYEQKM----KSMEEVWQKQMRSLQSSLSIAKK 653 (793)
Q Consensus 595 ~~~~e~~l~~~e~e~~~L~~~l~~~e~~~~ele~k~----~~~ee~~qkq~~~lq~~L~a~~~ 653 (793)
...+..+...++.+...+..+|+++.....++|..+ ..+--+.+..+.+|+..|++++.
T Consensus 146 ~~~L~~enerL~~e~~~~~~qlE~~v~~K~~~E~~L~~KF~~vLNeKK~KIR~lq~~L~~~~~ 208 (342)
T PF06632_consen 146 NEHLQKENERLESEANKLLKQLEKFVNAKEEHEEDLYAKFVLVLNEKKAKIRELQRLLASAKE 208 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhc
Confidence 334444455556666666667777666666666443 33444455777888888877776
No 104
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=51.39 E-value=1.7e+02 Score=28.88 Aligned_cols=56 Identities=20% Similarity=0.354 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 595 VLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSLSI 650 (793)
Q Consensus 595 ~~~~e~~l~~~e~e~~~L~~~l~~~e~~~~ele~k~~~~ee~~qkq~~~lq~~L~a 650 (793)
....+.++..+..++..|..+...........+.++..+++.|......|+..++.
T Consensus 45 n~~~~~e~~~L~~d~e~L~~q~~~ek~~r~~~e~~l~~~Ed~~~~e~k~L~~~v~~ 100 (158)
T PF09744_consen 45 NQEHEVELELLREDNEQLETQYEREKELRKQAEEELLELEDQWRQERKDLQSQVEQ 100 (158)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555566666667766666666666666666666666666555555544433
No 105
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=51.17 E-value=2.4e+02 Score=34.67 Aligned_cols=35 Identities=31% Similarity=0.360 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 003820 623 WSEYEQKMKSMEEVWQKQMRSLQSSLSIAKKSLAI 657 (793)
Q Consensus 623 ~~ele~k~~~~ee~~qkq~~~lq~~L~a~~~sla~ 657 (793)
..+.|.+|+++-+.++.++..++..++.+++-+..
T Consensus 630 LS~AEr~~~~EL~~~~~~l~~l~~si~~lk~k~~~ 664 (717)
T PF10168_consen 630 LSEAEREFKKELERMKDQLQDLKASIEQLKKKLDY 664 (717)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666677766666665544
No 106
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=50.62 E-value=1.1e+02 Score=31.08 Aligned_cols=23 Identities=17% Similarity=0.349 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 003820 597 KAEAALREKEEENDILHQRLQQY 619 (793)
Q Consensus 597 ~~e~~l~~~e~e~~~L~~~l~~~ 619 (793)
++.+++..++.+...|+.+++..
T Consensus 73 ~l~~~~~~~~~~i~~l~~~i~~~ 95 (188)
T PF03962_consen 73 KLQKEIEELEKKIEELEEKIEEA 95 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333343333333
No 107
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=50.59 E-value=1.5e+02 Score=24.84 Aligned_cols=44 Identities=25% Similarity=0.454 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Q 003820 602 LREKEEENDILHQRLQQYESRWSEYEQKMKS---MEEVWQKQMRSLQ 645 (793)
Q Consensus 602 l~~~e~e~~~L~~~l~~~e~~~~ele~k~~~---~ee~~qkq~~~lq 645 (793)
+.++.++|..|.++.+.....+..++..-.+ ....||..+.+|-
T Consensus 27 ieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsLL 73 (79)
T COG3074 27 IEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRALL 73 (79)
T ss_pred HHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555544445445443333 3334555555443
No 108
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=50.47 E-value=1.2e+02 Score=24.62 Aligned_cols=29 Identities=28% Similarity=0.350 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 596 LKAEAALREKEEENDILHQRLQQYESRWS 624 (793)
Q Consensus 596 ~~~e~~l~~~e~e~~~L~~~l~~~e~~~~ 624 (793)
..++..+..++.++..|..++..++....
T Consensus 29 ~~Le~~~~~L~~en~~L~~~~~~L~~~~~ 57 (64)
T PF00170_consen 29 EELEEKVEELESENEELKKELEQLKKEIQ 57 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444433
No 109
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=50.27 E-value=1.8e+02 Score=26.51 Aligned_cols=48 Identities=19% Similarity=0.284 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 587 FLAELQRRVLKAEAALREK--EEENDILHQRLQQYESRWSEYEQKMKSME 634 (793)
Q Consensus 587 ~l~~lq~r~~~~e~~l~~~--e~e~~~L~~~l~~~e~~~~ele~k~~~~e 634 (793)
.+....+|+..+|.++..+ .+++..|+-.+.+++.+..++++++..+.
T Consensus 43 ~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~ 92 (106)
T PF10805_consen 43 RLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVS 92 (106)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3334444555555555554 44455555555555555555554444443
No 110
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=49.28 E-value=1.6e+02 Score=31.23 Aligned_cols=67 Identities=25% Similarity=0.340 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHhc
Q 003820 589 AELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEE----------VWQKQMRSLQSSLSIAKKSL 655 (793)
Q Consensus 589 ~~lq~r~~~~e~~l~~~e~e~~~L~~~l~~~e~~~~ele~k~~~~ee----------~~qkq~~~lq~~L~a~~~sl 655 (793)
..|+.+..+++.....++.+......+-..++.+..+++..+..+.+ .|+......+..+..++..|
T Consensus 50 ~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~~ak~~L 126 (246)
T PF00769_consen 50 EELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEAEIARLEEESERKEEEAEELQEELEEAREDEEEAKEEL 126 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444333333333333334444444444333333 24444444444444444444
No 111
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=49.14 E-value=1.9e+02 Score=26.48 Aligned_cols=37 Identities=16% Similarity=0.281 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 596 LKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKS 632 (793)
Q Consensus 596 ~~~e~~l~~~e~e~~~L~~~l~~~e~~~~ele~k~~~ 632 (793)
..++..+..+..++....+.+..++++..++...+..
T Consensus 40 d~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~ 76 (107)
T PF09304_consen 40 DQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLED 76 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444443333
No 112
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=49.07 E-value=1.5e+02 Score=35.15 Aligned_cols=15 Identities=33% Similarity=0.350 Sum_probs=7.4
Q ss_pred CcchhhhhHHHHHhh
Q 003820 698 GLSVISRLAEEFDQR 712 (793)
Q Consensus 698 ~~~~v~~l~~e~~~~ 712 (793)
+.....+-+++|...
T Consensus 575 ~~~~s~~A~e~f~~~ 589 (652)
T COG2433 575 GEEMSHAAAEEFFKN 589 (652)
T ss_pred cCccchHHHHHHhhc
Confidence 333345556666443
No 113
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=48.90 E-value=4.3e+02 Score=30.34 Aligned_cols=12 Identities=17% Similarity=0.418 Sum_probs=6.3
Q ss_pred cceeEEeecCCC
Q 003820 152 GRSISILDIYGF 163 (793)
Q Consensus 152 ~~~IgILDI~GF 163 (793)
+..+.||-+|-+
T Consensus 74 ~~mLcilaVP~~ 85 (493)
T KOG0804|consen 74 STMLCILAVPAY 85 (493)
T ss_pred CcEEEEEecccc
Confidence 345555555543
No 114
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=48.33 E-value=1.5e+02 Score=28.90 Aligned_cols=55 Identities=18% Similarity=0.195 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 589 AELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRS 643 (793)
Q Consensus 589 ~~lq~r~~~~e~~l~~~e~e~~~L~~~l~~~e~~~~ele~k~~~~ee~~qkq~~~ 643 (793)
..+++.+......+..+++|+...+..++.....+.+++..++..+..|.++...
T Consensus 30 ~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~ 84 (160)
T PF13094_consen 30 RALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKK 84 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344445555555666666777777777777777777777777777666554443
No 115
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=48.03 E-value=19 Score=42.96 Aligned_cols=28 Identities=25% Similarity=0.313 Sum_probs=23.4
Q ss_pred HHHHHHHHhhhHHHHHHHHhhhhHHHHH
Q 003820 522 AAVVIQRQIKSRVARQKLKNIKYSSIMI 549 (793)
Q Consensus 522 AAi~IQ~~~R~~~~R~~~~~~r~aai~I 549 (793)
-|..||+.||.+++|+.|.++|.-+..+
T Consensus 698 ~A~~IQkAWRrfv~rrky~k~ree~t~l 725 (1106)
T KOG0162|consen 698 MARRIQKAWRRFVARRKYEKMREEATKL 725 (1106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999988755544
No 116
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=46.62 E-value=1.1e+02 Score=25.61 Aligned_cols=40 Identities=13% Similarity=0.258 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 594 RVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSM 633 (793)
Q Consensus 594 r~~~~e~~l~~~e~e~~~L~~~l~~~e~~~~ele~k~~~~ 633 (793)
|+.++|.++.=.++-+++|.+.+.....++..++..+..+
T Consensus 5 Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L 44 (69)
T PF04102_consen 5 RIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLL 44 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444433333333333333333
No 117
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=46.28 E-value=2e+02 Score=24.91 Aligned_cols=29 Identities=28% Similarity=0.393 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 602 LREKEEENDILHQRLQQYESRWSEYEQKM 630 (793)
Q Consensus 602 l~~~e~e~~~L~~~l~~~e~~~~ele~k~ 630 (793)
+.+++++|..|.++.+.....+.+++...
T Consensus 27 ieELKekn~~L~~e~~~~~~~r~~L~~en 55 (79)
T PRK15422 27 IEELKEKNNSLSQEVQNAQHQREELEREN 55 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 34444444444444444444444444433
No 118
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=46.12 E-value=1.1e+02 Score=30.03 Aligned_cols=52 Identities=25% Similarity=0.296 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHH
Q 003820 596 LKAEAALREKEEENDILHQRLQQYESRWSEYEQKM-----KSMEEVWQKQMRSLQSS 647 (793)
Q Consensus 596 ~~~e~~l~~~e~e~~~L~~~l~~~e~~~~ele~k~-----~~~ee~~qkq~~~lq~~ 647 (793)
.++..+|.+.|+|+.-|++-|...+++..++..++ ..+.+.+.+-+.+.+.+
T Consensus 32 eeLr~EL~KvEeEI~TLrqvL~aKer~~~eLKrkLGit~l~elkqnlskg~~~vq~S 88 (162)
T PF04201_consen 32 EELRSELAKVEEEIQTLRQVLAAKERHCAELKRKLGITPLSELKQNLSKGWHDVQDS 88 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCCchHHHHHHHHHHHhHhhhch
Confidence 45666777888888888888888888888888773 45555554444444443
No 119
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=44.83 E-value=3.5e+02 Score=27.46 Aligned_cols=13 Identities=15% Similarity=0.240 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHh
Q 003820 642 RSLQSSLSIAKKS 654 (793)
Q Consensus 642 ~~lq~~L~a~~~s 654 (793)
..+..++..++-.
T Consensus 169 ~~l~~~~~~~e~~ 181 (190)
T PF05266_consen 169 EALKEEIENAELE 181 (190)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444433
No 120
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=44.46 E-value=1.1e+02 Score=32.88 Aligned_cols=36 Identities=17% Similarity=0.121 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 596 LKAEAALREKEEENDILHQRLQQYESRWSEYEQKMK 631 (793)
Q Consensus 596 ~~~e~~l~~~e~e~~~L~~~l~~~e~~~~ele~k~~ 631 (793)
..++.++..++.+|++|+++...+++++..+..-+.
T Consensus 251 E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~ 286 (294)
T KOG4571|consen 251 EALLGELEGLEKRNEELKDQASELEREIRYLKQLIL 286 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566677777888888888777777765554443
No 121
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=44.33 E-value=2.2e+02 Score=32.89 Aligned_cols=46 Identities=20% Similarity=0.232 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 586 SFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMK 631 (793)
Q Consensus 586 ~~l~~lq~r~~~~e~~l~~~e~e~~~L~~~l~~~e~~~~ele~k~~ 631 (793)
.-++-|--++.+++.++..+..+|+.|+++++.++++......++.
T Consensus 59 DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~ 104 (472)
T TIGR03752 59 DTLRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQ 104 (472)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 4466666778888888888888888888888888776655555443
No 122
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=44.24 E-value=1.9e+02 Score=35.12 Aligned_cols=7 Identities=14% Similarity=0.415 Sum_probs=2.6
Q ss_pred HHHHhhh
Q 003820 526 IQRQIKS 532 (793)
Q Consensus 526 IQ~~~R~ 532 (793)
|...+.+
T Consensus 171 l~~Ai~~ 177 (650)
T TIGR03185 171 LKEAIEV 177 (650)
T ss_pred HHHHHHH
Confidence 3333333
No 123
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=44.10 E-value=1.4e+02 Score=32.92 Aligned_cols=15 Identities=20% Similarity=0.523 Sum_probs=6.4
Q ss_pred HHHHHHhccCCeeee
Q 003820 350 QLMQRLESTTPHFIR 364 (793)
Q Consensus 350 ~Lm~~L~~t~~hfIr 364 (793)
.||..+....|-|-+
T Consensus 130 ~l~a~f~~~pP~ys~ 144 (365)
T KOG2391|consen 130 ELIAAFSEDPPVYSR 144 (365)
T ss_pred HHHHHhcCCCccccC
Confidence 334444444444443
No 124
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=44.08 E-value=3.8e+02 Score=29.02 Aligned_cols=56 Identities=18% Similarity=0.297 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 598 AEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSLSIAKK 653 (793)
Q Consensus 598 ~e~~l~~~e~e~~~L~~~l~~~e~~~~ele~k~~~~ee~~qkq~~~lq~~L~a~~~ 653 (793)
+...+..+..++..|+.....++.+..+++.......+.++..+..++.++...+.
T Consensus 221 ~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~ 276 (312)
T PF00038_consen 221 LRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELRE 276 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHH
Confidence 33333334444444444444444444444444444444444444444444444333
No 125
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=44.05 E-value=2.6e+02 Score=29.47 Aligned_cols=50 Identities=22% Similarity=0.276 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 588 LAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVW 637 (793)
Q Consensus 588 l~~lq~r~~~~e~~l~~~e~e~~~L~~~l~~~e~~~~ele~k~~~~ee~~ 637 (793)
...+..+...++.++..++..+..++..+...+.++.+++.++..+++..
T Consensus 51 ~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~ 100 (251)
T PF11932_consen 51 KQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETR 100 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455555555555555555555555555555555555555443
No 126
>PRK00295 hypothetical protein; Provisional
Probab=43.76 E-value=1.9e+02 Score=24.20 Aligned_cols=33 Identities=12% Similarity=0.111 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 595 VLKAEAALREKEEENDILHQRLQQYESRWSEYE 627 (793)
Q Consensus 595 ~~~~e~~l~~~e~e~~~L~~~l~~~e~~~~ele 627 (793)
+.++|.++.=.++-+++|-+.+.+-.+++..++
T Consensus 7 i~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~ 39 (68)
T PRK00295 7 VTELESRQAFQDDTIQALNDVLVEQQRVIERLQ 39 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444443333333444333333333333333
No 127
>PRK12704 phosphodiesterase; Provisional
Probab=43.67 E-value=6.2e+02 Score=29.95 Aligned_cols=9 Identities=0% Similarity=0.025 Sum_probs=3.7
Q ss_pred hHHHHHhhh
Q 003820 705 LAEEFDQRS 713 (793)
Q Consensus 705 l~~e~~~~~ 713 (793)
.-+-||+=+
T Consensus 232 nir~~e~~t 240 (520)
T PRK12704 232 NIRALETLT 240 (520)
T ss_pred hHHHHHHHh
Confidence 334444443
No 128
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=43.33 E-value=1.4e+02 Score=25.00 Aligned_cols=46 Identities=17% Similarity=0.303 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 591 LQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEV 636 (793)
Q Consensus 591 lq~r~~~~e~~l~~~e~e~~~L~~~l~~~e~~~~ele~k~~~~ee~ 636 (793)
++.++...+.++...++....|+......+.....+..+++++++.
T Consensus 4 i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n 49 (71)
T PF10779_consen 4 IKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKSN 49 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666666666666666666666666666666654
No 129
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=43.20 E-value=2.8e+02 Score=30.47 Aligned_cols=26 Identities=35% Similarity=0.414 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 588 LAELQRRVLKAEAALREKEEENDILH 613 (793)
Q Consensus 588 l~~lq~r~~~~e~~l~~~e~e~~~L~ 613 (793)
+..++....++.+++..++.+...+.
T Consensus 66 L~~LE~e~~~l~~el~~le~e~~~l~ 91 (314)
T PF04111_consen 66 LEELEKEREELDQELEELEEELEELD 91 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444443
No 130
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=43.18 E-value=2.2e+02 Score=24.91 Aligned_cols=31 Identities=29% Similarity=0.388 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 597 KAEAALREKEEENDILHQRLQQYESRWSEYE 627 (793)
Q Consensus 597 ~~e~~l~~~e~e~~~L~~~l~~~e~~~~ele 627 (793)
++..++....++..+++.+|..++.+..|.|
T Consensus 5 Ki~~eieK~k~Kiae~Q~rlK~Le~qk~E~E 35 (83)
T PF14193_consen 5 KIRAEIEKTKEKIAELQARLKELEAQKTEAE 35 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444555555555555555555554
No 131
>PRK04406 hypothetical protein; Provisional
Probab=42.80 E-value=2.1e+02 Score=24.50 Aligned_cols=32 Identities=22% Similarity=0.208 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 592 QRRVLKAEAALREKEEENDILHQRLQQYESRW 623 (793)
Q Consensus 592 q~r~~~~e~~l~~~e~e~~~L~~~l~~~e~~~ 623 (793)
+.|+..+|.++.=.+.-+++|-+.+..-..++
T Consensus 10 e~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I 41 (75)
T PRK04406 10 EERINDLECQLAFQEQTIEELNDALSQQQLLI 41 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444443333333
No 132
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=42.61 E-value=2.5e+02 Score=25.57 Aligned_cols=34 Identities=21% Similarity=0.147 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 587 FLAELQRRVLKAEAALREKEEENDILHQRLQQYE 620 (793)
Q Consensus 587 ~l~~lq~r~~~~e~~l~~~e~e~~~L~~~l~~~e 620 (793)
....++.++...+.+...+...+.+|-.++..+.
T Consensus 11 ~~~~l~~~L~~v~~~~l~l~~~n~el~~el~~l~ 44 (106)
T PF05837_consen 11 ESRSLQEKLSDVEKKRLRLKRRNQELAQELLELA 44 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444555444444443
No 133
>smart00338 BRLZ basic region leucin zipper.
Probab=42.55 E-value=1.5e+02 Score=24.13 Aligned_cols=31 Identities=16% Similarity=0.289 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 596 LKAEAALREKEEENDILHQRLQQYESRWSEY 626 (793)
Q Consensus 596 ~~~e~~l~~~e~e~~~L~~~l~~~e~~~~el 626 (793)
..++.++..++.+|..|..++..++.+...+
T Consensus 29 ~~Le~~~~~L~~en~~L~~~~~~l~~e~~~l 59 (65)
T smart00338 29 EELERKVEQLEAENERLKKEIERLRRELEKL 59 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444455555555554444444433
No 134
>PRK02119 hypothetical protein; Provisional
Probab=42.50 E-value=1.9e+02 Score=24.52 Aligned_cols=37 Identities=19% Similarity=0.194 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 591 LQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYE 627 (793)
Q Consensus 591 lq~r~~~~e~~l~~~e~e~~~L~~~l~~~e~~~~ele 627 (793)
++.|+..+|.++.=.++-+.+|-+.+..-.+++..++
T Consensus 7 ~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~ 43 (73)
T PRK02119 7 LENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQ 43 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444443333333333
No 135
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=41.61 E-value=4.6e+02 Score=27.87 Aligned_cols=19 Identities=26% Similarity=0.420 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHhccc
Q 003820 639 KQMRSLQSSLSIAKKSLAI 657 (793)
Q Consensus 639 kq~~~lq~~L~a~~~sla~ 657 (793)
..+..++..+...+..+..
T Consensus 133 ~~l~~l~~~l~~~r~~l~~ 151 (302)
T PF10186_consen 133 QRLSQLQSQLARRRRQLIQ 151 (302)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334455555555555533
No 136
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.46 E-value=1.5e+02 Score=31.18 Aligned_cols=57 Identities=12% Similarity=0.108 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc
Q 003820 606 EEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSLSIAKKSLAIDDSER 662 (793)
Q Consensus 606 e~e~~~L~~~l~~~e~~~~ele~k~~~~ee~~qkq~~~lq~~L~a~~~sla~~~~~~ 662 (793)
.+++..++++..++..+..+|+.++++..+.-......++..++..+......+-++
T Consensus 56 ~~e~~s~Q~~~~~L~~ev~~~~~~~~s~~~~~~t~~~~ie~~l~~l~~~aG~v~V~G 112 (247)
T COG3879 56 VKELRSLQKKVNTLAAEVEDLENKLDSVRRSVLTDDAALEDRLEKLRMLAGSVPVTG 112 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHhccCCCcC
Confidence 344444455555555555555555555552222223444556666666665544333
No 137
>PRK00736 hypothetical protein; Provisional
Probab=41.08 E-value=1.9e+02 Score=24.23 Aligned_cols=24 Identities=21% Similarity=0.315 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 595 VLKAEAALREKEEENDILHQRLQQ 618 (793)
Q Consensus 595 ~~~~e~~l~~~e~e~~~L~~~l~~ 618 (793)
+.++|.++.=.+.-+++|-+.+.+
T Consensus 7 i~~LE~klafqe~tie~Ln~~v~~ 30 (68)
T PRK00736 7 LTELEIRVAEQEKTIEELSDQLAE 30 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344433333333333333333
No 138
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=41.04 E-value=5.5e+02 Score=29.63 Aligned_cols=46 Identities=20% Similarity=0.227 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 605 KEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSLSI 650 (793)
Q Consensus 605 ~e~e~~~L~~~l~~~e~~~~ele~k~~~~ee~~qkq~~~lq~~L~a 650 (793)
...|-.+|.++|....-+..++...+.+-+-+.|....++.+.+..
T Consensus 373 mn~Ere~L~reL~~i~~~~~~L~k~V~~~~leaq~~~~slek~~~~ 418 (622)
T COG5185 373 MNQEREKLTRELDKINIQSDKLTKSVKSRKLEAQGIFKSLEKTLRQ 418 (622)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3445556666666665556666655555555555555555554433
No 139
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=40.50 E-value=1.5e+02 Score=24.70 Aligned_cols=41 Identities=5% Similarity=0.182 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 592 QRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKS 632 (793)
Q Consensus 592 q~r~~~~e~~l~~~e~e~~~L~~~l~~~e~~~~ele~k~~~ 632 (793)
+.++.-.+..+.++.+.+...++++..++.+...+..++.+
T Consensus 10 E~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 50 (69)
T PF04102_consen 10 EIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRE 50 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333444444444444444444444444444333
No 140
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=40.13 E-value=2.8e+02 Score=32.82 Aligned_cols=31 Identities=19% Similarity=0.349 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 607 EENDILHQRLQQYESRWSEYEQKMKSMEEVW 637 (793)
Q Consensus 607 ~e~~~L~~~l~~~e~~~~ele~k~~~~ee~~ 637 (793)
.....+..+...+..+..+...++..+++..
T Consensus 199 ~~~e~l~~E~~~L~~q~~e~~~ri~~LEedi 229 (546)
T PF07888_consen 199 ESSEELKEERESLKEQLAEARQRIRELEEDI 229 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444445555555555443
No 141
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=40.11 E-value=1.6e+02 Score=31.41 Aligned_cols=55 Identities=18% Similarity=0.213 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 583 VKASFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVW 637 (793)
Q Consensus 583 ~~~~~l~~lq~r~~~~e~~l~~~e~e~~~L~~~l~~~e~~~~ele~k~~~~ee~~ 637 (793)
.+......+++...++..++..++..+.-|.-+|.....++.-++..++.+..++
T Consensus 71 ~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsEL 125 (307)
T PF10481_consen 71 SLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSEL 125 (307)
T ss_pred hHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555556666666666666666666555555555555554444444
No 142
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=39.82 E-value=2.3e+02 Score=34.83 Aligned_cols=47 Identities=19% Similarity=0.170 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 003820 605 KEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSLSIAKKSL 655 (793)
Q Consensus 605 ~e~e~~~L~~~l~~~e~~~~ele~k~~~~ee~~qkq~~~lq~~L~a~~~sl 655 (793)
++.++..|....+........+|.|+..+.+.. ..++.+|.+.+++.
T Consensus 472 Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R----~~lEkQL~eErk~r 518 (697)
T PF09726_consen 472 LQNKLQNLVQARQQDKQSLQQLEKRLAEERRQR----ASLEKQLQEERKAR 518 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 333333333333333333344444443333333 34444454444443
No 143
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=39.62 E-value=6.8e+02 Score=29.24 Aligned_cols=10 Identities=20% Similarity=0.517 Sum_probs=6.7
Q ss_pred cceeeeecCC
Q 003820 720 AKFLVEVKSG 729 (793)
Q Consensus 720 ~~~~~e~~~~ 729 (793)
.++||-...|
T Consensus 241 PDviV~LP~~ 250 (475)
T PRK10361 241 PDVIVRLPQG 250 (475)
T ss_pred CeEEEECCCC
Confidence 6777776655
No 144
>PRK04325 hypothetical protein; Provisional
Probab=39.52 E-value=1.9e+02 Score=24.56 Aligned_cols=39 Identities=15% Similarity=0.192 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 594 RVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKS 632 (793)
Q Consensus 594 r~~~~e~~l~~~e~e~~~L~~~l~~~e~~~~ele~k~~~ 632 (793)
|+.++|.++.=.+.-+++|-+.+.+-++++..++..+..
T Consensus 10 Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~ 48 (74)
T PRK04325 10 RITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRL 48 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444333333333
No 145
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=39.51 E-value=3e+02 Score=25.09 Aligned_cols=55 Identities=24% Similarity=0.290 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Q 003820 596 LKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSME---EVWQKQMRSLQSSLSI 650 (793)
Q Consensus 596 ~~~e~~l~~~e~e~~~L~~~l~~~e~~~~ele~k~~~~e---e~~qkq~~~lq~~L~a 650 (793)
.-++..+-+-...+..|.++|...+..+..++..+.++. ..+.+.++.||.++..
T Consensus 15 ~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~~ 72 (102)
T PF10205_consen 15 QVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELEE 72 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333334444555555544444444444444432 2344666777777764
No 146
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=39.49 E-value=7.8e+02 Score=29.89 Aligned_cols=145 Identities=12% Similarity=0.126 Sum_probs=0.0
Q ss_pred HHHHhhHHHHhhhhhhhhhHhHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 550 QSVIRGWLVRRCSGDICLLKSVESKGNDSDEVLVKASFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQK 629 (793)
Q Consensus 550 Qs~~Rg~~aRr~~~~l~~~~~~~~~~~~~~e~~~~~~~l~~lq~r~~~~e~~l~~~e~e~~~L~~~l~~~e~~~~ele~k 629 (793)
|...|....+-+-.+--.+.-..-.-...-....+...-..++..+.+...++...++++..++++++.++.+...++..
T Consensus 675 Qtllr~~v~~eqgekqElL~~~~~l~s~~~q~sllraE~~~l~~~le~e~nr~~~~~~e~~~~qeE~~~l~~r~~~le~e 754 (961)
T KOG4673|consen 675 QTLLRINVLEEQGEKQELLSLNFSLPSSPIQLSLLRAEQGQLSKSLEKERNRAAENRQEYLAAQEEADTLEGRANQLEVE 754 (961)
T ss_pred HHHHHHHHHHHhhhHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccccccc-cccCCCCCccccccccCCCCCCCCCCCCCccCCCCcch
Q 003820 630 MKSMEEVWQKQMRSLQSSLSIAKKSLAIDDSERN-SDASVNASDEVEYSWDTGSNCKGQESNGVRPMSAGLSV 701 (793)
Q Consensus 630 ~~~~ee~~qkq~~~lq~~L~a~~~sla~~~~~~~-~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 701 (793)
+..+......+...--......++.+.......- .+.+..+ ...+-+..-.++++..++.|+.++
T Consensus 755 ~r~~k~~~~q~lq~~ll~ve~~~k~~e~~~~~~~~lers~a~-------i~Ssp~~s~~~SgSnee~ag~~~~ 820 (961)
T KOG4673|consen 755 IRELKRKHKQELQEVLLHVELIQKDLEREKASRLDLERSTAR-------INSSPVSSQLPSGSNEEIAGQNSA 820 (961)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhhhCHHHHhhcccccCc-------cCCCCchhhCCCCchHhHhcccch
No 147
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=38.63 E-value=1.5e+02 Score=29.15 Aligned_cols=24 Identities=25% Similarity=0.685 Sum_probs=17.1
Q ss_pred CHHHHHHHHHhHHHHHhHHHHhhH
Q 003820 737 PDKELRRLKQMFEAWKKDYGSRLR 760 (793)
Q Consensus 737 ~~~el~~lk~~f~~wkk~~~~rlr 760 (793)
+.+|..++...|..|.+.|+.|=|
T Consensus 143 s~ee~~~~~~~~~~~~k~w~kRKr 166 (169)
T PF07106_consen 143 SPEEKEKLEKEYKKWRKEWKKRKR 166 (169)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777777777777777754
No 148
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=38.56 E-value=4.2e+02 Score=27.71 Aligned_cols=32 Identities=31% Similarity=0.369 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 603 REKEEENDILHQRLQQYESRWSEYEQKMKSME 634 (793)
Q Consensus 603 ~~~e~e~~~L~~~l~~~e~~~~ele~k~~~~e 634 (793)
...++++..|..+|...+.+....+.++..++
T Consensus 172 ~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le 203 (237)
T PF00261_consen 172 DEYEEKIRDLEEKLKEAENRAEFAERRVKKLE 203 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444443
No 149
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=38.46 E-value=2.8e+02 Score=27.94 Aligned_cols=44 Identities=18% Similarity=0.493 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 598 AEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQM 641 (793)
Q Consensus 598 ~e~~l~~~e~e~~~L~~~l~~~e~~~~ele~k~~~~ee~~qkq~ 641 (793)
+...+......|..|..+++.+...|..+...+..-+..|+...
T Consensus 86 LReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~ke~~~~~ee 129 (182)
T PF15035_consen 86 LREQLEQARKANEALQEDLQKLTQDWERLRDELEQKEAEWREEE 129 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445556666666666666666666555555555554433
No 150
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=38.41 E-value=3.1e+02 Score=24.97 Aligned_cols=52 Identities=15% Similarity=0.249 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 587 FLAELQRRVLKAEAALREKEEENDIL--HQRLQQYESRWSEYEQKMKSMEEVWQ 638 (793)
Q Consensus 587 ~l~~lq~r~~~~e~~l~~~e~e~~~L--~~~l~~~e~~~~ele~k~~~~ee~~q 638 (793)
.+..++.++...+.++..+|.++..| .+++..++.+..+++..++.+++.++
T Consensus 36 ~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~ 89 (106)
T PF10805_consen 36 DIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQ 89 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 45567778888888888888888888 88888888888888888888888874
No 151
>PF08763 Ca_chan_IQ: Voltage gated calcium channel IQ domain; InterPro: IPR014873 Ca2+ ions are unique in that they not only carry charge but they are also the most widely used of diffusible second messengers. Voltage-dependent Ca2+ channels (VDCC) are a family of molecules that allow cells to couple electrical activity to intracellular Ca2+ signalling. The opening and closing of these channels by depolarizing stimuli, such as action potentials, allows Ca2+ ions to enter neurons down a steep electrochemical gradient, producing transient intracellular Ca2+ signals. Many of the processes that occur in neurons, including transmitter release, gene transcription and metabolism are controlled by Ca2+ influx occurring simultaneously at different cellular locales. The pore is formed by the alpha-1 subunit which incorporates the conduction pore, the voltage sensor and gating apparatus, and the known sites of channel regulation by second messengers, drugs, and toxins []. The activity of this pore is modulated by 4 tightly-coupled subunits: an intracellular beta subunit; a transmembrane gamma subunit; and a disulphide-linked complex of alpha-2 and delta subunits, which are proteolytically cleaved from the same gene product. Properties of the protein including gating voltage-dependence, G protein modulation and kinase susceptibility can be influenced by these subunits. Voltage-gated calcium channels are classified as T, L, N, P, Q and R, and are distinguished by their sensitivity to pharmacological blocks, single-channel conductance kinetics, and voltage-dependence. On the basis of their voltage activation properties, the voltage-gated calcium classes can be further divided into two broad groups: the low (T-type) and high (L, N, P, Q and R-type) threshold-activated channels. The voltage-gated calcium channel alpha 1 subunit contains an IQ domain, named for its isoleucine-glutamine (IQ) motif, which interacts with hydrophobic pockets of Ca2+/calmodulin []. The interaction regulates two self-regulatory calcium dependent feedback mechanisms, calcium dependent inactivation (CDI), and calcium-dependent facilitation (CDF). ; PDB: 3OXQ_F 2F3Z_B 3G43_E 2F3Y_B 2BE6_D 3DVM_B 3BXK_D 2VAY_B 3DVK_B 3BXL_B ....
Probab=38.33 E-value=34 Score=24.77 Aligned_cols=18 Identities=22% Similarity=0.288 Sum_probs=14.9
Q ss_pred HHHHHHHHHhhhHHHHHH
Q 003820 521 RAAVVIQRQIKSRVARQK 538 (793)
Q Consensus 521 ~AAi~IQ~~~R~~~~R~~ 538 (793)
-|+..||.+||.+..|+.
T Consensus 10 YAt~lI~dyfr~~K~rk~ 27 (35)
T PF08763_consen 10 YATLLIQDYFRQFKKRKE 27 (35)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 488999999998888765
No 152
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=38.28 E-value=8.5e+02 Score=30.03 Aligned_cols=9 Identities=22% Similarity=0.276 Sum_probs=3.6
Q ss_pred hcccccccc
Q 003820 713 SQVFGDDAK 721 (793)
Q Consensus 713 ~q~~~~~~~ 721 (793)
+|...|.++
T Consensus 544 rq~ikdqld 552 (1118)
T KOG1029|consen 544 RQAIKDQLD 552 (1118)
T ss_pred HHHHHHHHH
Confidence 343444443
No 153
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=37.45 E-value=3.7e+02 Score=30.59 Aligned_cols=76 Identities=26% Similarity=0.327 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 003820 580 EVLVKASFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSLSIAKKSLAID 658 (793)
Q Consensus 580 e~~~~~~~l~~lq~r~~~~e~~l~~~e~e~~~L~~~l~~~e~~~~ele~k~~~~ee~~qkq~~~lq~~L~a~~~sla~~ 658 (793)
.++.....+.++|+++.++..+-+...-|...|+..+.+ --+..|+.+=. +.+...++++.+..+|..|.+.|...
T Consensus 253 ~Lq~aEqsl~dlQk~Lekar~e~rnvavek~~lerkl~e-a~rl~elreg~--e~e~~rkelE~lR~~L~kAEkele~n 328 (575)
T KOG4403|consen 253 GLQRAEQSLEDLQKRLEKAREEQRNVAVEKLDLERKLDE-APRLSELREGV--ENETSRKELEQLRVALEKAEKELEAN 328 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHhh-hhhhhhhhcch--hHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344444456666666666555544444444444444331 11112222111 12222245677777888887777653
No 154
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=37.34 E-value=2.9e+02 Score=34.50 Aligned_cols=43 Identities=14% Similarity=0.114 Sum_probs=21.2
Q ss_pred CccccCCcccHHHHHHHHHHHhhcC-CCHHHHHHHHHHHHHHHHhcC
Q 003820 13 SCYSINGVDDAEQFRIVVEALDIVH-VSKEDQESVFAMLAAVLWLGN 58 (793)
Q Consensus 13 ~~~~~~~~dD~~~f~~~~~Al~~lg-~~~~~~~~if~ilaaILhLGN 58 (793)
....+.++.|.... ..-+..=| ++..+...|.++|.++-.+-+
T Consensus 61 ~~~~l~~~~Di~~~---l~r~~~g~~l~~~eL~~i~~~l~~~~~l~~ 104 (782)
T PRK00409 61 GLPPFEGVKDIDDA---LKRAEKGGVLSGDELLEIAKTLRYFRQLKR 104 (782)
T ss_pred CCCCCCCCccHHHH---HHHHhCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 33445555553333 33333212 456666666666666554433
No 155
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=36.77 E-value=2e+02 Score=23.44 Aligned_cols=24 Identities=25% Similarity=0.317 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 594 RVLKAEAALREKEEENDILHQRLQ 617 (793)
Q Consensus 594 r~~~~e~~l~~~e~e~~~L~~~l~ 617 (793)
++..++.+...+..++..|..++.
T Consensus 34 ~~~~L~~en~~L~~~~~~L~~~~~ 57 (64)
T PF00170_consen 34 KVEELESENEELKKELEQLKKEIQ 57 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 156
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=36.68 E-value=1.3e+02 Score=27.49 Aligned_cols=23 Identities=17% Similarity=0.222 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 003820 595 VLKAEAALREKEEENDILHQRLQ 617 (793)
Q Consensus 595 ~~~~e~~l~~~e~e~~~L~~~l~ 617 (793)
+..+++++.+++++|+.|+.++.
T Consensus 36 ~~~~~~e~~~l~~~n~~L~~eI~ 58 (105)
T PRK00888 36 VAAQQQTNAKLKARNDQLFAEID 58 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444443
No 157
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=36.35 E-value=2.9e+02 Score=34.35 Aligned_cols=12 Identities=17% Similarity=-0.017 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHH
Q 003820 43 QESVFAMLAAVL 54 (793)
Q Consensus 43 ~~~if~ilaaIL 54 (793)
...|.++|.++-
T Consensus 87 l~~i~~~l~~~~ 98 (771)
T TIGR01069 87 ILVIQNALKTVK 98 (771)
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
No 158
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=36.31 E-value=8.1e+02 Score=32.71 Aligned_cols=36 Identities=11% Similarity=0.060 Sum_probs=20.8
Q ss_pred hhhHHHHHH-HHHHHHHHHhHHHHHHHHHHHhhhHHH
Q 003820 500 LQSFIRGEK-IRKEYALVLQRHRAAVVIQRQIKSRVA 535 (793)
Q Consensus 500 IQs~~Rg~~-aRr~~~~l~~~~~AAi~IQ~~~R~~~~ 535 (793)
++..++.+- .+.....+.....+...|...|+.|..
T Consensus 225 l~e~~~~~~~~~~~le~l~~~~~~l~~i~~~y~~y~~ 261 (1353)
T TIGR02680 225 VADALEQLDEYRDELERLEALERALRNFLQRYRRYAR 261 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444332 244445555566677778888877765
No 159
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=36.25 E-value=3.2e+02 Score=29.91 Aligned_cols=62 Identities=16% Similarity=0.196 Sum_probs=34.6
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 576 NDSDEVLVKASFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVW 637 (793)
Q Consensus 576 ~~~~e~~~~~~~l~~lq~r~~~~e~~l~~~e~e~~~L~~~l~~~e~~~~ele~k~~~~ee~~ 637 (793)
...++|..+...+.+++.+....-.+..++..-+...++.=..+..+..+++.|......++
T Consensus 231 rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL 292 (306)
T PF04849_consen 231 RQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAML 292 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455656666666666666655555555554444444444455555556665555555554
No 160
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=36.03 E-value=4.6e+02 Score=26.49 Aligned_cols=17 Identities=12% Similarity=0.411 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 003820 614 QRLQQYESRWSEYEQKM 630 (793)
Q Consensus 614 ~~l~~~e~~~~ele~k~ 630 (793)
++++.++.+..+++..+
T Consensus 110 ~~l~~l~~~~~~l~~el 126 (188)
T PF03962_consen 110 EELEELKKELKELKKEL 126 (188)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 161
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=35.99 E-value=5.5e+02 Score=31.56 Aligned_cols=23 Identities=26% Similarity=0.411 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHhccccc
Q 003820 637 WQKQMRSLQSSLSIAKKSLAIDD 659 (793)
Q Consensus 637 ~qkq~~~lq~~L~a~~~sla~~~ 659 (793)
+..-...||.+|+..-..|..+.
T Consensus 541 L~eLtR~LQ~Sma~lL~dls~D~ 563 (861)
T PF15254_consen 541 LRELTRTLQNSMAKLLSDLSVDS 563 (861)
T ss_pred HHHHHHHHHHHHHHHhhhccccc
Confidence 33444566666666666555443
No 162
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=35.99 E-value=2.7e+02 Score=27.38 Aligned_cols=23 Identities=17% Similarity=0.242 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 003820 587 FLAELQRRVLKAEAALREKEEEN 609 (793)
Q Consensus 587 ~l~~lq~r~~~~e~~l~~~e~e~ 609 (793)
.+..|+.++..++.++..++.++
T Consensus 80 ei~~L~~el~~l~~~~k~l~~eL 102 (169)
T PF07106_consen 80 EIKELREELAELKKEVKSLEAEL 102 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444433333333
No 163
>PRK02119 hypothetical protein; Provisional
Probab=35.97 E-value=2.7e+02 Score=23.66 Aligned_cols=14 Identities=21% Similarity=0.273 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHhc
Q 003820 642 RSLQSSLSIAKKSL 655 (793)
Q Consensus 642 ~~lq~~L~a~~~sl 655 (793)
..|+.++......+
T Consensus 40 d~L~~ql~~L~~rl 53 (73)
T PRK02119 40 DKMQVQLRYMANKL 53 (73)
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444433333
No 164
>PRK02793 phi X174 lysis protein; Provisional
Probab=35.97 E-value=2.4e+02 Score=23.92 Aligned_cols=38 Identities=16% Similarity=0.171 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 593 RRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKM 630 (793)
Q Consensus 593 ~r~~~~e~~l~~~e~e~~~L~~~l~~~e~~~~ele~k~ 630 (793)
.|+.++|.++.=.+.-+++|-+.+.+.+.++..++..+
T Consensus 8 ~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l 45 (72)
T PRK02793 8 ARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHL 45 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444443333333333
No 165
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=35.06 E-value=2.1e+02 Score=26.24 Aligned_cols=30 Identities=23% Similarity=0.186 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 595 VLKAEAALREKEEENDILHQRLQQYESRWS 624 (793)
Q Consensus 595 ~~~~e~~l~~~e~e~~~L~~~l~~~e~~~~ 624 (793)
+..++..+..+-+++.+|+..+..+..+..
T Consensus 10 l~~le~~l~~l~~~~~~LK~~~~~l~EEN~ 39 (107)
T PF06156_consen 10 LDQLEQQLGQLLEELEELKKQLQELLEENA 39 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444443333
No 166
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=34.90 E-value=3e+02 Score=32.24 Aligned_cols=60 Identities=25% Similarity=0.380 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 590 ELQRRVLKAEAALREKEEENDILHQRLQQYESRW----SEYEQKMKSMEEVWQKQMRSLQSSLSIAKK 653 (793)
Q Consensus 590 ~lq~r~~~~e~~l~~~e~e~~~L~~~l~~~e~~~----~ele~k~~~~ee~~qkq~~~lq~~L~a~~~ 653 (793)
.|..++..++++...+.+++..+.+.+..++.+. .-||.++..|-|- +.+|.+.|+..+.
T Consensus 445 aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr~NYE~QLs~MSEH----LasmNeqL~~Q~e 508 (518)
T PF10212_consen 445 ALQKRLESAEKEKESLEEELKEANQNISRLQDELETTRRNYEEQLSMMSEH----LASMNEQLAKQRE 508 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 3444455555555555555555555554444443 3344444444433 3555555554443
No 167
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=34.79 E-value=2.8e+02 Score=29.29 Aligned_cols=14 Identities=29% Similarity=0.373 Sum_probs=6.6
Q ss_pred HHHhhHHHHHHHhh
Q 003820 755 YGSRLRETKVILNK 768 (793)
Q Consensus 755 ~~~rlr~~~~~~~~ 768 (793)
....|++-+..|.-
T Consensus 187 lq~QL~~L~~EL~~ 200 (246)
T PF00769_consen 187 LQEQLKELKSELEQ 200 (246)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH
Confidence 34455555555533
No 168
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=34.76 E-value=3e+02 Score=32.32 Aligned_cols=10 Identities=30% Similarity=0.348 Sum_probs=5.3
Q ss_pred hcccccccce
Q 003820 713 SQVFGDDAKF 722 (793)
Q Consensus 713 ~q~~~~~~~~ 722 (793)
.|+|..-+..
T Consensus 217 k~~fq~t~~~ 226 (907)
T KOG2264|consen 217 KQVFQETIPN 226 (907)
T ss_pred HHHHHHhccc
Confidence 4555555555
No 169
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=34.21 E-value=5.5e+02 Score=26.64 Aligned_cols=8 Identities=13% Similarity=0.206 Sum_probs=3.2
Q ss_pred HHHHcCCC
Q 003820 435 ILHQFNIL 442 (793)
Q Consensus 435 il~~~~~~ 442 (793)
++-.+.+|
T Consensus 17 ~iL~Lpip 24 (216)
T KOG1962|consen 17 LILLLPIP 24 (216)
T ss_pred HHHHcCCC
Confidence 33344443
No 170
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=34.19 E-value=1.8e+02 Score=23.47 Aligned_cols=23 Identities=13% Similarity=0.377 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 003820 595 VLKAEAALREKEEENDILHQRLQ 617 (793)
Q Consensus 595 ~~~~e~~l~~~e~e~~~L~~~l~ 617 (793)
+..++..+..++.+++++...++
T Consensus 9 ~~~~~~~i~tvk~en~~i~~~ve 31 (55)
T PF05377_consen 9 LPRIESSINTVKKENEEISESVE 31 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 171
>PRK12704 phosphodiesterase; Provisional
Probab=34.10 E-value=5.6e+02 Score=30.32 Aligned_cols=8 Identities=25% Similarity=0.447 Sum_probs=3.1
Q ss_pred hhhHHHHH
Q 003820 703 SRLAEEFD 710 (793)
Q Consensus 703 ~~l~~e~~ 710 (793)
...-+||+
T Consensus 289 ~~~~~~~~ 296 (520)
T PRK12704 289 EKARKEVD 296 (520)
T ss_pred HHHHHHHH
Confidence 33334443
No 172
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=34.06 E-value=3.3e+02 Score=34.61 Aligned_cols=63 Identities=25% Similarity=0.304 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 003820 594 RVLKAEAALREKEEENDILHQRLQQYESRWSEYEQ---KMKSMEEVWQKQMRSLQSSLSIAKKSLA 656 (793)
Q Consensus 594 r~~~~e~~l~~~e~e~~~L~~~l~~~e~~~~ele~---k~~~~ee~~qkq~~~lq~~L~a~~~sla 656 (793)
+..+++..+.....+...+++++++.+....+.+. ++...+..+..+...++.+++.++..+.
T Consensus 484 ~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~~~e~ii~~~~~se~~l~~~a~~l~~~~~~s~~d~s 549 (1041)
T KOG0243|consen 484 EKEKLKSKLQNKNKELESLKEELQQAKATLKEEEEIISQQEKSEEKLVDRATKLRRSLEESQDDLS 549 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444333332 2223333444444555555555555443
No 173
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=34.04 E-value=8.3e+02 Score=28.61 Aligned_cols=35 Identities=14% Similarity=0.226 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 584 KASFLAELQRRVLKAEAALREKEEENDILHQRLQQ 618 (793)
Q Consensus 584 ~~~~l~~lq~r~~~~e~~l~~~e~e~~~L~~~l~~ 618 (793)
+.....+|...+..+.++++...-|++++.+-|+.
T Consensus 231 q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~ 265 (596)
T KOG4360|consen 231 QQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQA 265 (596)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444433333
No 174
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=33.67 E-value=2.8e+02 Score=29.71 Aligned_cols=73 Identities=18% Similarity=0.224 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 003820 581 VLVKASFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSLSIAKKSLAI 657 (793)
Q Consensus 581 ~~~~~~~l~~lq~r~~~~e~~l~~~e~e~~~L~~~l~~~e~~~~ele~k~~~~ee~~qkq~~~lq~~L~a~~~sla~ 657 (793)
|+.+...+.+-++++.+-+.++.++...+..+++..=+.| -.-.|+++..-|+ .+++..|+..++..+.+|+.
T Consensus 70 iRHLkakLkes~~~l~dRetEI~eLksQL~RMrEDWIEEE--CHRVEAQLALKEA--RkEIkQLkQvieTmrssL~e 142 (305)
T PF15290_consen 70 IRHLKAKLKESENRLHDRETEIDELKSQLARMREDWIEEE--CHRVEAQLALKEA--RKEIKQLKQVIETMRSSLAE 142 (305)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH--HHHHHHHHHHHHHHHhhhch
Confidence 3444445555555555556666666666666655553332 2222222221111 13444555555555555554
No 175
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=33.60 E-value=3e+02 Score=30.24 Aligned_cols=62 Identities=16% Similarity=0.205 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 585 ASFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQS 646 (793)
Q Consensus 585 ~~~l~~lq~r~~~~e~~l~~~e~e~~~L~~~l~~~e~~~~ele~k~~~~ee~~qkq~~~lq~ 646 (793)
+..+..++.++.+...++..+..+..+++++++.++..+.+..+++....++.++....+..
T Consensus 203 ~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~ 264 (312)
T smart00787 203 PTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQ 264 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 176
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=33.53 E-value=2.4e+02 Score=27.75 Aligned_cols=31 Identities=29% Similarity=0.284 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 590 ELQRRVLKAEAALREKEEENDILHQRLQQYE 620 (793)
Q Consensus 590 ~lq~r~~~~e~~l~~~e~e~~~L~~~l~~~e 620 (793)
.++....++..++..++.|+..|.+++..++
T Consensus 108 ~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~ 138 (161)
T TIGR02894 108 RLKNQNESLQKRNEELEKELEKLRQRLSTIE 138 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444433
No 177
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=33.53 E-value=4.7e+02 Score=30.98 Aligned_cols=15 Identities=27% Similarity=0.195 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHhccc
Q 003820 643 SLQSSLSIAKKSLAI 657 (793)
Q Consensus 643 ~lq~~L~a~~~sla~ 657 (793)
.++.++.+.+..|..
T Consensus 280 ~~~~e~e~LkeqLr~ 294 (546)
T PF07888_consen 280 QLQQENEALKEQLRS 294 (546)
T ss_pred hHHHHHHHHHHHHHH
Confidence 444445555555544
No 178
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=33.33 E-value=5e+02 Score=25.84 Aligned_cols=31 Identities=13% Similarity=0.260 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003820 624 SEYEQKMKSMEEVWQKQMRSLQSSLSIAKKS 654 (793)
Q Consensus 624 ~ele~k~~~~ee~~qkq~~~lq~~L~a~~~s 654 (793)
...+.++..+.......+..+..++++.+-.
T Consensus 123 ~~~~~ki~e~~~ki~~ei~~lr~~iE~~K~~ 153 (177)
T PF07798_consen 123 AKQELKIQELNNKIDTEIANLRTEIESLKWD 153 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444555555555555555443
No 179
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=33.24 E-value=3e+02 Score=33.42 Aligned_cols=19 Identities=16% Similarity=0.345 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 003820 612 LHQRLQQYESRWSEYEQKM 630 (793)
Q Consensus 612 L~~~l~~~e~~~~ele~k~ 630 (793)
|+.++..++.+..+.+..+
T Consensus 267 Le~ei~~le~e~~e~~~~l 285 (650)
T TIGR03185 267 LERQLKEIEAARKANRAQL 285 (650)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 180
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=32.85 E-value=2e+02 Score=23.20 Aligned_cols=36 Identities=14% Similarity=0.157 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 596 LKAEAALREKEEENDILHQRLQQYESRWSEYEQKMK 631 (793)
Q Consensus 596 ~~~e~~l~~~e~e~~~L~~~l~~~e~~~~ele~k~~ 631 (793)
.++|.++..++-.+.-++.+++++.....++++.++
T Consensus 3 ~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk 38 (55)
T PF05377_consen 3 DELENELPRIESSINTVKKENEEISESVEKIEENVK 38 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555544444443
No 181
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=32.85 E-value=2.2e+02 Score=25.19 Aligned_cols=38 Identities=21% Similarity=0.285 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 586 SFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRW 623 (793)
Q Consensus 586 ~~l~~lq~r~~~~e~~l~~~e~e~~~L~~~l~~~e~~~ 623 (793)
++=.+.+.++.+++.++..+.+|+..|+.++.....+.
T Consensus 42 sYe~rwek~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek 79 (87)
T PF12709_consen 42 SYEARWEKKVDELENENKALKRENEQLKKKLDTEREEK 79 (87)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666667777777777777777766665544443
No 182
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=32.69 E-value=4.3e+02 Score=24.92 Aligned_cols=36 Identities=17% Similarity=0.426 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 597 KAEAALREKEEENDILHQRLQQYESRWSEYEQKMKS 632 (793)
Q Consensus 597 ~~e~~l~~~e~e~~~L~~~l~~~e~~~~ele~k~~~ 632 (793)
.++..+..+..+....+..|...+..|.+-+..+..
T Consensus 70 ~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~ 105 (132)
T PF07926_consen 70 ELQQEINELKAEAESAKAELEESEASWEEQKEQLEK 105 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 333333444444444444444444444333333333
No 183
>PF15272 BBP1_C: Spindle pole body component BBP1, C-terminal
Probab=32.63 E-value=5.6e+02 Score=26.20 Aligned_cols=59 Identities=25% Similarity=0.344 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 591 LQRRVLKAEAAL----REKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSLS 649 (793)
Q Consensus 591 lq~r~~~~e~~l----~~~e~e~~~L~~~l~~~e~~~~ele~k~~~~ee~~qkq~~~lq~~L~ 649 (793)
++.++..++..+ .++..+...+.+++-.++-+..+++.+.......-+..+.+|+.+|.
T Consensus 87 l~~~i~~le~~lvd~~~~kd~~i~~~~~~l~~~~~r~~el~~~r~~e~~~YesRI~dLE~~L~ 149 (196)
T PF15272_consen 87 LQSRISNLEKQLVDQMIEKDREIRTLQDELLSLELRNKELQNERERERIAYESRIADLERQLN 149 (196)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444443 33455666677777777777777776666555566666677777666
No 184
>PRK00846 hypothetical protein; Provisional
Probab=32.44 E-value=3.3e+02 Score=23.51 Aligned_cols=51 Identities=18% Similarity=0.070 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 584 KASFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSME 634 (793)
Q Consensus 584 ~~~~l~~lq~r~~~~e~~l~~~e~e~~~L~~~l~~~e~~~~ele~k~~~~e 634 (793)
...-+.+|+.++.-.+..+.++.+.+...++.+..++.+..-+-.+++.++
T Consensus 11 le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 11 LEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 185
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=32.28 E-value=4.3e+02 Score=25.84 Aligned_cols=27 Identities=15% Similarity=0.334 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 617 QQYESRWSEYEQKMKSMEEVWQKQMRS 643 (793)
Q Consensus 617 ~~~e~~~~ele~k~~~~ee~~qkq~~~ 643 (793)
+.++.++.+|+...+...+.++.++..
T Consensus 54 eeLk~~i~~lq~~~~~~~~~~e~~l~~ 80 (155)
T PF06810_consen 54 EELKKQIEELQAKNKTAKEEYEAKLAQ 80 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444443
No 186
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=31.74 E-value=6.4e+02 Score=29.80 Aligned_cols=20 Identities=20% Similarity=0.388 Sum_probs=8.6
Q ss_pred hhhhhHHHHHhhhccccccc
Q 003820 701 VISRLAEEFDQRSQVFGDDA 720 (793)
Q Consensus 701 ~v~~l~~e~~~~~q~~~~~~ 720 (793)
+|..-.+||++.-.--+++|
T Consensus 281 ~~~~~~~~~~~~i~~~g~~~ 300 (514)
T TIGR03319 281 MVEKATKEVDNAIREEGEQA 300 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444445554443333333
No 187
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=31.74 E-value=1.7e+02 Score=26.75 Aligned_cols=30 Identities=13% Similarity=0.216 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 597 KAEAALREKEEENDILHQRLQQYESRWSEY 626 (793)
Q Consensus 597 ~~e~~l~~~e~e~~~L~~~l~~~e~~~~el 626 (793)
++++++.++++++++++++.+.++.+...+
T Consensus 31 ~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L 60 (105)
T PRK00888 31 RVNDQVAAQQQTNAKLKARNDQLFAEIDDL 60 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444555555555555555555444444333
No 188
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=31.69 E-value=4.6e+02 Score=31.54 Aligned_cols=10 Identities=40% Similarity=0.830 Sum_probs=7.4
Q ss_pred ecCccccccc
Q 003820 272 HYAGEVIYDT 281 (793)
Q Consensus 272 HyaG~V~Y~v 281 (793)
+|.|++-|+.
T Consensus 79 Gy~~digyq~ 88 (594)
T PF05667_consen 79 GYRGDIGYQT 88 (594)
T ss_pred CCCCCCcchh
Confidence 5778888863
No 189
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=31.66 E-value=2.3e+02 Score=22.31 Aligned_cols=25 Identities=40% Similarity=0.500 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 596 LKAEAALREKEEENDILHQRLQQYE 620 (793)
Q Consensus 596 ~~~e~~l~~~e~e~~~L~~~l~~~e 620 (793)
..++..+..++.+|..|..++..++
T Consensus 28 ~~le~~~~~L~~en~~L~~~i~~L~ 52 (54)
T PF07716_consen 28 EELEQEVQELEEENEQLRQEIAQLE 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444455555555555555554443
No 190
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=31.53 E-value=8.8e+02 Score=31.03 Aligned_cols=52 Identities=13% Similarity=0.279 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 590 ELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQM 641 (793)
Q Consensus 590 ~lq~r~~~~e~~l~~~e~e~~~L~~~l~~~e~~~~ele~k~~~~ee~~qkq~ 641 (793)
.+..++...+..+...+.....+...++.+++++.+++...+.++++.+...
T Consensus 300 ~~k~rl~~~~k~i~~~kk~~~~~~~~ie~~ek~l~av~~~~~~fekei~~~~ 351 (1141)
T KOG0018|consen 300 HLKKRLEEIEKDIETAKKDYRALKETIERLEKELKAVEGAKEEFEKEIEERS 351 (1141)
T ss_pred cchhHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555666667777777777777788888888877777777777665443
No 191
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=31.48 E-value=5.2e+02 Score=30.60 Aligned_cols=61 Identities=20% Similarity=0.289 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003820 594 RVLKAEAALREKEEENDILHQRLQQYESRWS------EYEQKMKSMEEVWQKQMRSLQSSLSIAKKS 654 (793)
Q Consensus 594 r~~~~e~~l~~~e~e~~~L~~~l~~~e~~~~------ele~k~~~~ee~~qkq~~~lq~~L~a~~~s 654 (793)
.+.++..++..+|+|++.|+.+...+.+... +-=.+|....+++++....++.+++...+.
T Consensus 295 ~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~ 361 (581)
T KOG0995|consen 295 KLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRLSKE 361 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555555444443321 011334444444444444444444444433
No 192
>PRK02793 phi X174 lysis protein; Provisional
Probab=31.35 E-value=3.2e+02 Score=23.08 Aligned_cols=10 Identities=20% Similarity=0.358 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 003820 642 RSLQSSLSIA 651 (793)
Q Consensus 642 ~~lq~~L~a~ 651 (793)
..|+.++...
T Consensus 39 ~~L~~~l~~L 48 (72)
T PRK02793 39 AKLRDHLRLL 48 (72)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 193
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=31.30 E-value=8.8e+02 Score=28.07 Aligned_cols=42 Identities=24% Similarity=0.242 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 003820 619 YESRWSEYEQKMKSMEEVWQKQMRSLQSSLSIAKKSLAIDDS 660 (793)
Q Consensus 619 ~e~~~~ele~k~~~~ee~~qkq~~~lq~~L~a~~~sla~~~~ 660 (793)
....--|+-..+.+-.+++++++..|...|++...++.+-+.
T Consensus 428 ~~~~myd~~~~l~~~q~~le~qI~~Le~kl~~l~~~l~s~~~ 469 (489)
T KOG3684|consen 428 TQNDMYDLLQELHSRQEELEKQIDTLESKLEALTASLSSLPG 469 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCch
Confidence 334444445555566666666777777777777777665443
No 194
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=31.18 E-value=4.6e+02 Score=31.55 Aligned_cols=6 Identities=33% Similarity=1.182 Sum_probs=2.8
Q ss_pred HHHhhh
Q 003820 217 CLNLFE 222 (793)
Q Consensus 217 ~ldLie 222 (793)
||.+|.
T Consensus 41 cL~~I~ 46 (594)
T PF05667_consen 41 CLRVID 46 (594)
T ss_pred HHHHhC
Confidence 444444
No 195
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=31.08 E-value=4.2e+02 Score=26.33 Aligned_cols=23 Identities=17% Similarity=0.193 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 003820 580 EVLVKASFLAELQRRVLKAEAAL 602 (793)
Q Consensus 580 e~~~~~~~l~~lq~r~~~~e~~l 602 (793)
++.++.....+++.++..+....
T Consensus 80 el~~ld~~i~~l~ek~q~l~~t~ 102 (201)
T KOG4603|consen 80 ELQVLDGKIVALTEKVQSLQQTC 102 (201)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 196
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=31.01 E-value=3.2e+02 Score=27.13 Aligned_cols=34 Identities=18% Similarity=0.234 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 602 LREKEEENDILHQRLQQYESRWSEYEQKMKSMEE 635 (793)
Q Consensus 602 l~~~e~e~~~L~~~l~~~e~~~~ele~k~~~~ee 635 (793)
+..+..+++.|+++++.+....+..|+.++.+..
T Consensus 81 l~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s 114 (201)
T KOG4603|consen 81 LQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSS 114 (201)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555555444444444433
No 197
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=30.89 E-value=5.1e+02 Score=25.20 Aligned_cols=54 Identities=13% Similarity=0.158 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 594 RVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSS 647 (793)
Q Consensus 594 r~~~~e~~l~~~e~e~~~L~~~l~~~e~~~~ele~k~~~~ee~~qkq~~~lq~~ 647 (793)
+...++..+....+.++.|++++...+.....-...+.+++...+....++...
T Consensus 28 ~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~ 81 (160)
T PF13094_consen 28 RKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEE 81 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555556666665555555555555555555554444443333
No 198
>PF14282 FlxA: FlxA-like protein
Probab=30.88 E-value=1.8e+02 Score=26.54 Aligned_cols=15 Identities=20% Similarity=0.465 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHH
Q 003820 589 AELQRRVLKAEAALR 603 (793)
Q Consensus 589 ~~lq~r~~~~e~~l~ 603 (793)
..|++++..+...+.
T Consensus 22 ~~L~~Qi~~Lq~ql~ 36 (106)
T PF14282_consen 22 EQLQKQIKQLQEQLQ 36 (106)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444433
No 199
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.56 E-value=3.3e+02 Score=22.91 Aligned_cols=19 Identities=11% Similarity=0.064 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 003820 605 KEEENDILHQRLQQYESRW 623 (793)
Q Consensus 605 ~e~e~~~L~~~l~~~e~~~ 623 (793)
+.-|+++|+++...+..+.
T Consensus 23 LQmEieELKEknn~l~~e~ 41 (79)
T COG3074 23 LQMEIEELKEKNNSLSQEV 41 (79)
T ss_pred HHHHHHHHHHHhhHhHHHH
Confidence 3334444444444443333
No 200
>PRK00106 hypothetical protein; Provisional
Probab=30.47 E-value=7.1e+02 Score=29.59 Aligned_cols=28 Identities=21% Similarity=0.406 Sum_probs=14.3
Q ss_pred chhhhhHHHHHhhhcccccccceeeeecCC
Q 003820 700 SVISRLAEEFDQRSQVFGDDAKFLVEVKSG 729 (793)
Q Consensus 700 ~~v~~l~~e~~~~~q~~~~~~~~~~e~~~~ 729 (793)
.+|..-.+||++.-.--+++| +.|+..+
T Consensus 301 e~v~k~~~e~~~~i~~~Ge~a--~~~lg~~ 328 (535)
T PRK00106 301 ELVEKNRLEMDNRIREYGEAA--AYEIGAP 328 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHcCCC
Confidence 455566666666555444443 3344443
No 201
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=30.47 E-value=5.1e+02 Score=27.77 Aligned_cols=8 Identities=25% Similarity=0.634 Sum_probs=3.3
Q ss_pred CCCCccCh
Q 003820 401 GFPTRMSH 408 (793)
Q Consensus 401 Gyp~r~~~ 408 (793)
||-++.++
T Consensus 91 gY~Vk~S~ 98 (269)
T PF05278_consen 91 GYQVKPSQ 98 (269)
T ss_pred CEEEcHhH
Confidence 44444333
No 202
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=30.20 E-value=6.6e+02 Score=26.33 Aligned_cols=60 Identities=15% Similarity=0.180 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHh
Q 003820 595 VLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEV----------WQKQMRSLQSSLSIAKKS 654 (793)
Q Consensus 595 ~~~~e~~l~~~e~e~~~L~~~l~~~e~~~~ele~k~~~~ee~----------~qkq~~~lq~~L~a~~~s 654 (793)
+.+.+.+...+..|-....++|.+....+..+|.-+++.+++ +..+...|..++...+++
T Consensus 34 L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 34 LEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444445544444454444444333332 223334555566666666
No 203
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=30.02 E-value=5.8e+02 Score=25.57 Aligned_cols=52 Identities=27% Similarity=0.341 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Q 003820 598 AEAALREKEEENDILHQRLQQYESRWSEYEQK--MKSMEEVWQKQMRSLQSSLSI 650 (793)
Q Consensus 598 ~e~~l~~~e~e~~~L~~~l~~~e~~~~ele~k--~~~~ee~~qkq~~~lq~~L~a 650 (793)
++.....+.++.++|++.+........-|+.- -..||+++ +++..|...++.
T Consensus 90 Le~~~~~l~~ri~eLe~~l~~kad~vvsYqll~hr~e~ee~~-~~l~~le~~~~~ 143 (175)
T PRK13182 90 LEAQLNTITRRLDELERQLQQKADDVVSYQLLQHRREMEEML-ERLQKLEARLKK 143 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHH-HHHHHHHHHHHH
Confidence 34444444444444444444444444444321 12333333 444444444444
No 204
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=29.95 E-value=1.3e+03 Score=29.68 Aligned_cols=34 Identities=24% Similarity=0.281 Sum_probs=17.3
Q ss_pred CCHHHHHHHHHhHHHHHh----------HHHHhhHHHHHHHhhh
Q 003820 736 NPDKELRRLKQMFEAWKK----------DYGSRLRETKVILNKL 769 (793)
Q Consensus 736 ~~~~el~~lk~~f~~wkk----------~~~~rlr~~~~~~~~~ 769 (793)
+.+++.+.|+.=-+.=++ .+|..|-+++-.|++|
T Consensus 658 s~d~~ie~le~e~~~l~~~~~~l~~~~~~~e~~l~e~~~~~~~l 701 (1074)
T KOG0250|consen 658 SFDDEIEDLEREASRLQKEILELENQRREAEKNLEELEKKLREL 701 (1074)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555544443333 4455555555555555
No 205
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=29.68 E-value=4.1e+02 Score=33.07 Aligned_cols=7 Identities=29% Similarity=0.614 Sum_probs=3.8
Q ss_pred HHHHHHc
Q 003820 433 VAILHQF 439 (793)
Q Consensus 433 ~~il~~~ 439 (793)
.++|+.+
T Consensus 425 ~aiLe~l 431 (771)
T TIGR01069 425 ISILEYL 431 (771)
T ss_pred HHHHHHH
Confidence 4556654
No 206
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=29.65 E-value=4.3e+02 Score=25.36 Aligned_cols=19 Identities=16% Similarity=0.247 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHhccc
Q 003820 639 KQMRSLQSSLSIAKKSLAI 657 (793)
Q Consensus 639 kq~~~lq~~L~a~~~sla~ 657 (793)
+.+..+...+..+-+..+.
T Consensus 109 ~~~~~i~~~i~~~v~~~a~ 127 (158)
T PF03938_consen 109 ELLQPIQKKINKAVEEYAK 127 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555444
No 207
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=29.62 E-value=1.3e+03 Score=29.61 Aligned_cols=16 Identities=19% Similarity=0.430 Sum_probs=9.4
Q ss_pred HHhhHHHHHHHhhhcC
Q 003820 756 GSRLRETKVILNKLGS 771 (793)
Q Consensus 756 ~~rlr~~~~~~~~~~~ 771 (793)
+-+++.+++++.-|.+
T Consensus 709 ~~~~~~~~~em~el~n 724 (1074)
T KOG0250|consen 709 KRRIRKKRAEMTELKN 724 (1074)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 3455666666666655
No 208
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=29.55 E-value=4.6e+02 Score=32.38 Aligned_cols=19 Identities=21% Similarity=0.474 Sum_probs=13.6
Q ss_pred cCCeeeeecCCCCCCCCCc
Q 003820 358 TTPHFIRCIKPNNFQSPGL 376 (793)
Q Consensus 358 t~~hfIrCIkPN~~~~p~~ 376 (793)
|..+||.|-+|.....|..
T Consensus 423 ~~Ve~llcT~~~~~~~~~P 441 (717)
T PF10168_consen 423 CIVEYLLCTKPLSSSAPNP 441 (717)
T ss_pred cceEEEeccCCCCCCCCCC
Confidence 3468999999877665544
No 209
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=29.47 E-value=3.9e+02 Score=33.31 Aligned_cols=11 Identities=27% Similarity=0.344 Sum_probs=5.0
Q ss_pred hChhHHHHHHh
Q 003820 389 CGVLEVVRISR 399 (793)
Q Consensus 389 ~gvle~vri~r 399 (793)
.|+.+.+.|.+
T Consensus 393 ~~m~~~~~Il~ 403 (782)
T PRK00409 393 GHMTNIVRILE 403 (782)
T ss_pred HHHHHHHHHHH
Confidence 34444444443
No 210
>PF12004 DUF3498: Domain of unknown function (DUF3498); InterPro: IPR021887 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with PF00616 from PFAM, PF00168 from PFAM. This domain has two conserved sequence motifs: DLQ and PLSFQNP. ; PDB: 3BXJ_B.
Probab=29.46 E-value=18 Score=41.98 Aligned_cols=80 Identities=24% Similarity=0.328 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 003820 580 EVLVKASFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSLSIAKKSLAIDD 659 (793)
Q Consensus 580 e~~~~~~~l~~lq~r~~~~e~~l~~~e~e~~~L~~~l~~~e~~~~ele~k~~~~ee~~qkq~~~lq~~L~a~~~sla~~~ 659 (793)
||..++.-+....+++.+.|.+|..-|+... +-|.+++++..+-|.+++...++...+|.++-.-|-+...+|..+-
T Consensus 377 EI~~LkErL~~S~rkLeEyErrLl~QEqqt~---Kll~qyq~RLedSE~RLr~QQ~eKd~qmksII~RL~~vEeELrre~ 453 (495)
T PF12004_consen 377 EIQSLKERLRMSHRKLEEYERRLLSQEQQTQ---KLLLQYQARLEDSEERLRRQQEEKDSQMKSIISRLMAVEEELRREH 453 (495)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH---HHHHHHHHhhhhhHHHHHHHhhhhHHHHHHHHhhhhhhhhhhhhhH
Confidence 4444444444444455555555544444322 3355566666667777766666666666666666666666666554
Q ss_pred ccc
Q 003820 660 SER 662 (793)
Q Consensus 660 ~~~ 662 (793)
...
T Consensus 454 ~~m 456 (495)
T PF12004_consen 454 AEM 456 (495)
T ss_dssp ---
T ss_pred HHH
Confidence 433
No 211
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=29.19 E-value=1.4e+03 Score=29.95 Aligned_cols=46 Identities=15% Similarity=0.148 Sum_probs=26.2
Q ss_pred HHHHhcCCCCccChHHHHHHhhccccccCCCCChHHHHHHHHHHcCCCCc
Q 003820 395 VRISRSGFPTRMSHQKFARRYGFLLLESVASQDPLSVSVAILHQFNILPE 444 (793)
Q Consensus 395 vri~r~Gyp~r~~~~eF~~RY~~L~~~~~~~~d~~~~~~~il~~~~~~~~ 444 (793)
..+.+.-+|-.-++-+|+..= .| .|...-.+-....+|..-++.|.
T Consensus 528 ~~l~~~L~p~~gSL~~fL~~~---~p-~We~tIGKVid~eLL~r~dL~P~ 573 (1201)
T PF12128_consen 528 AELQRQLDPQKGSLLEFLRKN---KP-GWEQTIGKVIDEELLYRTDLEPQ 573 (1201)
T ss_pred HHHHHhhCCCCCcHHHHHHhC---CC-cHHHHhHhhCCHHHhcCCCCCCe
Confidence 356677789899998888543 22 22111112223357777777663
No 212
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=29.15 E-value=5.5e+02 Score=25.09 Aligned_cols=38 Identities=11% Similarity=0.330 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q 003820 587 FLAELQRRVLKAEAALREKEE---ENDILHQRLQQYESRWS 624 (793)
Q Consensus 587 ~l~~lq~r~~~~e~~l~~~e~---e~~~L~~~l~~~e~~~~ 624 (793)
.+..++.++..+...+..+.. .+++|+.+++.++....
T Consensus 28 e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~ 68 (155)
T PF06810_consen 28 ERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNK 68 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 344444444555555554444 55666666666665555
No 213
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=29.14 E-value=5.2e+02 Score=28.63 Aligned_cols=13 Identities=46% Similarity=0.657 Sum_probs=5.0
Q ss_pred cccccHHHHHHHh
Q 003820 289 RDLLHLDSIELLS 301 (793)
Q Consensus 289 ~D~l~~~~~~ll~ 301 (793)
+|....+.+.++.
T Consensus 18 ~~~~~~~~l~lls 30 (365)
T KOG2391|consen 18 KDLTRQDLLNLLS 30 (365)
T ss_pred hhhHHHHHHHHHH
Confidence 3333333443333
No 214
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=28.81 E-value=1.8e+02 Score=32.33 Aligned_cols=68 Identities=25% Similarity=0.363 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc--cccccccCCCCCcccccc
Q 003820 600 AALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSLSIAKKSLAIDD--SERNSDASVNASDEVEYS 677 (793)
Q Consensus 600 ~~l~~~e~e~~~L~~~l~~~e~~~~ele~k~~~~ee~~qkq~~~lq~~L~a~~~sla~~~--~~~~~~~s~~~~~~~~~~ 677 (793)
.++..+.-|+-....+++++.++.+|+-++.+.++...+ | +-+..++ .+...+.|+..-|-+|++
T Consensus 11 ~el~~i~~ei~~id~qiqel~~kkqel~qkkk~i~kkie---------l----k~~edsdag~~~eyd~spaawdkd~fp 77 (695)
T KOG0353|consen 11 EELADIDGEIGAIDIQIQELREKKQELIQKKKAIEKKIE---------L----KCLEDSDAGASNEYDRSPAAWDKDDFP 77 (695)
T ss_pred HHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------h----hhcccccccccccccCCccccccCCCC
Confidence 344444444444455555555555555555444443331 1 1111111 233345666667778888
Q ss_pred ccC
Q 003820 678 WDT 680 (793)
Q Consensus 678 ~~~ 680 (793)
|+.
T Consensus 78 ws~ 80 (695)
T KOG0353|consen 78 WSD 80 (695)
T ss_pred Cch
Confidence 876
No 215
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=28.79 E-value=6.7e+02 Score=26.95 Aligned_cols=15 Identities=27% Similarity=0.370 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHHHH
Q 003820 615 RLQQYESRWSEYEQK 629 (793)
Q Consensus 615 ~l~~~e~~~~ele~k 629 (793)
++.+.+++..+...+
T Consensus 215 eL~~~Eke~~e~~~~ 229 (269)
T PF05278_consen 215 ELKQKEKEVKEIKER 229 (269)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 216
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=28.39 E-value=3.6e+02 Score=29.21 Aligned_cols=10 Identities=20% Similarity=0.395 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 003820 623 WSEYEQKMKS 632 (793)
Q Consensus 623 ~~ele~k~~~ 632 (793)
...+..+|..
T Consensus 245 ~~~L~ekme~ 254 (297)
T PF02841_consen 245 IKQLKEKMEE 254 (297)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 217
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=28.30 E-value=1.4e+03 Score=30.11 Aligned_cols=55 Identities=16% Similarity=0.377 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH------HHHHHHHHHHHHHHHHHHhc
Q 003820 601 ALREKEEENDILHQRLQQYESRWSEYEQK-MKSMEE------VWQKQMRSLQSSLSIAKKSL 655 (793)
Q Consensus 601 ~l~~~e~e~~~L~~~l~~~e~~~~ele~k-~~~~ee------~~qkq~~~lq~~L~a~~~sl 655 (793)
++..+..++..++.+|...+.+...|+.. +..+.. .|+.+...++..+...-...
T Consensus 314 ~~~~~~~~l~~~~~~L~~i~~~~~~ye~~~i~~~~~~~~~l~~~~~~~~~l~~~~~~Lt~~~ 375 (1201)
T PF12128_consen 314 ELSALNADLARIKSELDEIEQQKKDYEDADIEQLIARVDQLPEWRNELENLQEQLDLLTSKH 375 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444555555555555555555432 333333 34444444444444444443
No 218
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=27.97 E-value=6.3e+02 Score=32.07 Aligned_cols=44 Identities=16% Similarity=0.284 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 599 EAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMR 642 (793)
Q Consensus 599 e~~l~~~e~e~~~L~~~l~~~e~~~~ele~k~~~~ee~~qkq~~ 642 (793)
..++.+.+..+..+.+.+.....+...+|.+++.++....++|.
T Consensus 250 ~~~i~e~~~~i~~l~e~~~k~~~ei~~le~~ikei~~~rd~em~ 293 (1174)
T KOG0933|consen 250 AHEIEEMKDKIAKLDESLGKTDKEIESLEKEIKEIEQQRDAEMG 293 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33444445555555555555555555555555555555444443
No 219
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.83 E-value=3.2e+02 Score=28.86 Aligned_cols=53 Identities=9% Similarity=0.200 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 597 KAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSLS 649 (793)
Q Consensus 597 ~~e~~l~~~e~e~~~L~~~l~~~e~~~~ele~k~~~~ee~~qkq~~~lq~~L~ 649 (793)
.+..+++++.++...|+.+...+++....+.....+....++.+.+.|.+...
T Consensus 54 ~L~~e~~s~Q~~~~~L~~ev~~~~~~~~s~~~~~~t~~~~ie~~l~~l~~~aG 106 (247)
T COG3879 54 DLVKELRSLQKKVNTLAAEVEDLENKLDSVRRSVLTDDAALEDRLEKLRMLAG 106 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHhc
Confidence 44455556666666666666666666666664444455555444555554433
No 220
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=27.76 E-value=2e+02 Score=31.89 Aligned_cols=10 Identities=20% Similarity=0.225 Sum_probs=5.1
Q ss_pred HHHHHHHHhh
Q 003820 522 AAVVIQRQIK 531 (793)
Q Consensus 522 AAi~IQ~~~R 531 (793)
||--|..|++
T Consensus 195 Aa~~Lc~WV~ 204 (344)
T PF12777_consen 195 AAGSLCKWVR 204 (344)
T ss_dssp THHHHHHHHH
T ss_pred cchHHHHHHH
Confidence 4555555554
No 221
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=27.70 E-value=3.3e+02 Score=25.14 Aligned_cols=30 Identities=17% Similarity=0.072 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 595 VLKAEAALREKEEENDILHQRLQQYESRWS 624 (793)
Q Consensus 595 ~~~~e~~l~~~e~e~~~L~~~l~~~e~~~~ 624 (793)
+..++..+..+-+++.+|+..+..+..+..
T Consensus 10 l~~le~~l~~l~~el~~LK~~~~el~EEN~ 39 (110)
T PRK13169 10 LDDLEQNLGVLLKELGALKKQLAELLEENT 39 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444443333
No 222
>PRK00106 hypothetical protein; Provisional
Probab=27.67 E-value=8.7e+02 Score=28.85 Aligned_cols=23 Identities=13% Similarity=0.260 Sum_probs=13.5
Q ss_pred hhhhHHHHHhhhcc---cccccceee
Q 003820 702 ISRLAEEFDQRSQV---FGDDAKFLV 724 (793)
Q Consensus 702 v~~l~~e~~~~~q~---~~~~~~~~~ 724 (793)
-++.-+-||+-+-| +||+..++|
T Consensus 244 eGrNir~~E~~tGvdliiddtp~~v~ 269 (535)
T PRK00106 244 EGRNIRTLESLTGIDVIIDDTPEVVV 269 (535)
T ss_pred CcchHHHHHHHhCceEEEcCCCCeEE
Confidence 35666777777763 455554444
No 223
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=27.63 E-value=6.9e+02 Score=25.67 Aligned_cols=47 Identities=19% Similarity=0.212 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003820 608 ENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSLSIAKKS 654 (793)
Q Consensus 608 e~~~L~~~l~~~e~~~~ele~k~~~~ee~~qkq~~~lq~~L~a~~~s 654 (793)
....|++.|.+.+.++..+|+-|...|+.--.+...-|-.+.++..+
T Consensus 58 ~~~~L~~~LrEkEErILaLEad~~kWEqkYLEEs~mrq~a~dAaa~a 104 (205)
T PF12240_consen 58 NASNLKELLREKEERILALEADMTKWEQKYLEESAMRQFAMDAAATA 104 (205)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 35667888888888888888888777776544445555556555444
No 224
>PF06409 NPIP: Nuclear pore complex interacting protein (NPIP); InterPro: IPR009443 This family consists of a series of primate specific nuclear pore complex interacting protein (NPIP) sequences. The function of this family is unknown but is well conserved from African apes to humans [].
Probab=26.72 E-value=7.5e+02 Score=25.89 Aligned_cols=40 Identities=20% Similarity=0.189 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 603 REKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMR 642 (793)
Q Consensus 603 ~~~e~e~~~L~~~l~~~e~~~~ele~k~~~~ee~~qkq~~ 642 (793)
.++|.++.+-.+....-.+++..|..+...|+|..++...
T Consensus 137 ~EKErqlSeAeEn~kl~mkei~tY~~~fQ~~Qel~~RaEd 176 (265)
T PF06409_consen 137 AEKERQLSEAEENGKLAMKEIHTYKQMFQRMQELQQRAED 176 (265)
T ss_pred HHHHhhhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333445556666666666666654443
No 225
>PRK00295 hypothetical protein; Provisional
Probab=26.70 E-value=3.8e+02 Score=22.39 Aligned_cols=34 Identities=6% Similarity=0.087 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 591 LQRRVLKAEAALREKEEENDILHQRLQQYESRWS 624 (793)
Q Consensus 591 lq~r~~~~e~~l~~~e~e~~~L~~~l~~~e~~~~ 624 (793)
|+.++.-.+..+.++.+.+...++++..++.+..
T Consensus 10 LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~ 43 (68)
T PRK00295 10 LESRQAFQDDTIQALNDVLVEQQRVIERLQLQMA 43 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444444444444444444433
No 226
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=26.61 E-value=1e+02 Score=30.55 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 003820 596 LKAEAALREKEEENDILHQRLQQ 618 (793)
Q Consensus 596 ~~~e~~l~~~e~e~~~L~~~l~~ 618 (793)
..+|.++.+..|+++-|+.+|++
T Consensus 3 eD~EsklN~AIERnalLE~ELdE 25 (166)
T PF04880_consen 3 EDFESKLNQAIERNALLESELDE 25 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHH
Confidence 35566666666666666666643
No 227
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=26.41 E-value=5.5e+02 Score=24.18 Aligned_cols=51 Identities=20% Similarity=0.343 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 603 REKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSLSIAKK 653 (793)
Q Consensus 603 ~~~e~e~~~L~~~l~~~e~~~~ele~k~~~~ee~~qkq~~~lq~~L~a~~~ 653 (793)
..+.++...++.++..++.........+...+..|..+-..|+.++..+..
T Consensus 62 ~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~ 112 (132)
T PF07926_consen 62 QQLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQ 112 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444444444444433
No 228
>PRK04406 hypothetical protein; Provisional
Probab=26.39 E-value=4.1e+02 Score=22.70 Aligned_cols=12 Identities=8% Similarity=0.158 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q 003820 642 RSLQSSLSIAKK 653 (793)
Q Consensus 642 ~~lq~~L~a~~~ 653 (793)
..|+.++.....
T Consensus 42 ~~L~~ql~~L~~ 53 (75)
T PRK04406 42 TKMQDQMKYVVG 53 (75)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 229
>KOG3990 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.34 E-value=3.5e+02 Score=28.55 Aligned_cols=66 Identities=18% Similarity=0.200 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003820 585 ASFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSLSIAKKS 654 (793)
Q Consensus 585 ~~~l~~lq~r~~~~e~~l~~~e~e~~~L~~~l~~~e~~~~ele~k~~~~ee~~qkq~~~lq~~L~a~~~s 654 (793)
...++.|+..+.+-...+-++...+.+|+-. ++...++|...+.-.+.+++..++.-.+++..++|
T Consensus 231 keeia~Lkk~L~qkdq~ileKdkqisnLKad----~e~~~~~ek~Hke~v~qL~~k~~~~lk~~a~l~~s 296 (305)
T KOG3990|consen 231 KEEIARLKKLLHQKDQLILEKDKQISNLKAD----KEYQKELEKKHKERVQQLQKKKEESLKAIAQLRNS 296 (305)
T ss_pred HHHHHHHHHHHhhhHHHHHhhhhhhhccCcc----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3344444444333333344444444444332 11124455555555566666666665666665544
No 230
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=26.31 E-value=9.6e+02 Score=26.93 Aligned_cols=16 Identities=13% Similarity=0.219 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHhccc
Q 003820 642 RSLQSSLSIAKKSLAI 657 (793)
Q Consensus 642 ~~lq~~L~a~~~sla~ 657 (793)
..+..+|+..+..+..
T Consensus 304 ~~IseeLe~vK~emee 319 (359)
T PF10498_consen 304 AEISEELEQVKQEMEE 319 (359)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4555566666665543
No 231
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=26.26 E-value=7.3e+02 Score=25.51 Aligned_cols=17 Identities=24% Similarity=0.268 Sum_probs=11.0
Q ss_pred CcchhhhhHHHHHhhhc
Q 003820 698 GLSVISRLAEEFDQRSQ 714 (793)
Q Consensus 698 ~~~~v~~l~~e~~~~~q 714 (793)
-..-|.+|..|+...+|
T Consensus 136 l~~e~erL~aeL~~er~ 152 (202)
T PF06818_consen 136 LRREVERLRAELQRERQ 152 (202)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34456777777776666
No 232
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=26.14 E-value=5.6e+02 Score=27.54 Aligned_cols=13 Identities=31% Similarity=0.695 Sum_probs=8.9
Q ss_pred cCCCCccChHHHH
Q 003820 400 SGFPTRMSHQKFA 412 (793)
Q Consensus 400 ~Gyp~r~~~~eF~ 412 (793)
-|||--++...|.
T Consensus 3 LGypr~iSmenFr 15 (267)
T PF10234_consen 3 LGYPRLISMENFR 15 (267)
T ss_pred CCCCCCCcHHHcC
Confidence 4788777776664
No 233
>PRK00736 hypothetical protein; Provisional
Probab=26.07 E-value=3.9e+02 Score=22.32 Aligned_cols=29 Identities=24% Similarity=0.312 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 590 ELQRRVLKAEAALREKEEENDILHQRLQQ 618 (793)
Q Consensus 590 ~lq~r~~~~e~~l~~~e~e~~~L~~~l~~ 618 (793)
+|+.++.-.+..+.++.+.+...++++..
T Consensus 9 ~LE~klafqe~tie~Ln~~v~~Qq~~i~~ 37 (68)
T PRK00736 9 ELEIRVAEQEKTIEELSDQLAEQWKTVEQ 37 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444433
No 234
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=25.85 E-value=1.1e+03 Score=27.68 Aligned_cols=12 Identities=8% Similarity=0.133 Sum_probs=7.6
Q ss_pred hhhHHHHHhhhc
Q 003820 703 SRLAEEFDQRSQ 714 (793)
Q Consensus 703 ~~l~~e~~~~~q 714 (793)
++.-+-||+-+-
T Consensus 224 Grnir~~e~~tg 235 (514)
T TIGR03319 224 GRNIRALETLTG 235 (514)
T ss_pred cchHHHHHHHhC
Confidence 555666776665
No 235
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=25.58 E-value=9.9e+02 Score=29.59 Aligned_cols=14 Identities=14% Similarity=0.143 Sum_probs=6.2
Q ss_pred HHHHhhHHHHHHHh
Q 003820 754 DYGSRLRETKVILN 767 (793)
Q Consensus 754 ~~~~rlr~~~~~~~ 767 (793)
++..|.|+++-+|.
T Consensus 288 qkeelVk~~qeeLd 301 (1265)
T KOG0976|consen 288 QKEELVKELQEELD 301 (1265)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444443
No 236
>PF07195 FliD_C: Flagellar hook-associated protein 2 C-terminus; InterPro: IPR010809 The flagellar hook-associated protein 2 (HAP2 or FliD) forms the distal end of the flagella, and plays a role in mucin specific adhesion of the bacteria []. This alignment covers the C-terminal region of the flagellar hook-associated protein 2.; GO: 0007155 cell adhesion, 0009288 bacterial-type flagellum
Probab=25.58 E-value=1.9e+02 Score=30.21 Aligned_cols=44 Identities=23% Similarity=0.388 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 608 ENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSLSIA 651 (793)
Q Consensus 608 e~~~L~~~l~~~e~~~~ele~k~~~~ee~~qkq~~~lq~~L~a~ 651 (793)
+...|..++..++.++..++.++...++.+.+|...|+..+...
T Consensus 194 ~~~~l~~~~~~~~~~i~~~~~rl~~~~~~l~~qf~~me~~i~~l 237 (239)
T PF07195_consen 194 RIDSLNSQIKSLDKQIEDLEERLESKEERLRKQFSAMESLISQL 237 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34456666677777777777778777777777777777666543
No 237
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=25.32 E-value=1e+02 Score=23.54 Aligned_cols=27 Identities=22% Similarity=0.155 Sum_probs=19.1
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 003820 26 FRIVVEALDIVHVSKEDQESVFAMLAAVLW 55 (793)
Q Consensus 26 f~~~~~Al~~lg~~~~~~~~if~ilaaILh 55 (793)
..++..||..|||++.++ -+++..|+-
T Consensus 3 ~~d~~~AL~~LGy~~~e~---~~av~~~~~ 29 (47)
T PF07499_consen 3 LEDALEALISLGYSKAEA---QKAVSKLLE 29 (47)
T ss_dssp HHHHHHHHHHTTS-HHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHH---HHHHHHhhc
Confidence 567899999999999884 445555543
No 238
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=25.01 E-value=64 Score=36.49 Aligned_cols=19 Identities=26% Similarity=0.440 Sum_probs=11.6
Q ss_pred chhhHhhhhhhcccccchh
Q 003820 471 LHGILRVQSCFRGHQARLC 489 (793)
Q Consensus 471 l~aa~~IQ~~~Rg~~~R~~ 489 (793)
++||+.||+|+|+|.+|..
T Consensus 17 ikaAilIQkWYRr~~ARle 35 (631)
T KOG0377|consen 17 IKAAILIQKWYRRYEARLE 35 (631)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666543
No 239
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=24.98 E-value=4e+02 Score=31.36 Aligned_cols=14 Identities=29% Similarity=0.314 Sum_probs=6.1
Q ss_pred CcchhhhhHHHHHh
Q 003820 698 GLSVISRLAEEFDQ 711 (793)
Q Consensus 698 ~~~~v~~l~~e~~~ 711 (793)
|.+...-|-.-|++
T Consensus 209 G~~~d~~lk~~fq~ 222 (907)
T KOG2264|consen 209 GQSEDEWLKQVFQE 222 (907)
T ss_pred ccchHHHHHHHHHH
Confidence 33334444445544
No 240
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=24.68 E-value=5.9e+02 Score=23.96 Aligned_cols=55 Identities=18% Similarity=0.226 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 003820 604 EKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSLSIAKKSLAID 658 (793)
Q Consensus 604 ~~e~e~~~L~~~l~~~e~~~~ele~k~~~~ee~~qkq~~~lq~~L~a~~~sla~~ 658 (793)
.+++++++.+.+|.+++.+..+.=..-..+-..+...-..+...|+.....|..+
T Consensus 29 ~l~~eL~~~k~el~~yk~~V~~HF~~ta~Ll~~l~~~Y~~l~~Hla~~a~~Ll~~ 83 (128)
T PF06295_consen 29 KLEQELEQAKQELEQYKQEVNDHFAQTAELLDNLTQDYQKLYQHLAKGAEELLPD 83 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 3444455555566666655555444444455555566677888888888887643
No 241
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=24.63 E-value=2e+02 Score=31.16 Aligned_cols=24 Identities=25% Similarity=0.219 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 601 ALREKEEENDILHQRLQQYESRWS 624 (793)
Q Consensus 601 ~l~~~e~e~~~L~~~l~~~e~~~~ 624 (793)
.+.++.+||++|++++.++..+..
T Consensus 67 ~~~~l~~EN~~Lr~e~~~l~~~~~ 90 (283)
T TIGR00219 67 DVNNLEYENYKLRQELLKKNQQLE 90 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777777777766544433
No 242
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=24.51 E-value=5.8e+02 Score=29.03 Aligned_cols=16 Identities=6% Similarity=0.198 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHhccc
Q 003820 642 RSLQSSLSIAKKSLAI 657 (793)
Q Consensus 642 ~~lq~~L~a~~~sla~ 657 (793)
.++++.|+.-+.-+..
T Consensus 301 Rdi~E~~Es~qtRisk 316 (395)
T PF10267_consen 301 RDIWEVMESCQTRISK 316 (395)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 4455555555554444
No 243
>PHA02562 46 endonuclease subunit; Provisional
Probab=24.45 E-value=4.4e+02 Score=31.07 Aligned_cols=47 Identities=15% Similarity=0.127 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 590 ELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEV 636 (793)
Q Consensus 590 ~lq~r~~~~e~~l~~~e~e~~~L~~~l~~~e~~~~ele~k~~~~ee~ 636 (793)
.+..+...++.++.+++.+..++..+|..++.++.++......++.+
T Consensus 355 ~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~ke 401 (562)
T PHA02562 355 TLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKE 401 (562)
T ss_pred HHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444455555555555555555555555555555554444444
No 244
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=23.54 E-value=1e+03 Score=26.19 Aligned_cols=17 Identities=29% Similarity=0.167 Sum_probs=11.9
Q ss_pred CcchhhhhHHHHHhhhc
Q 003820 698 GLSVISRLAEEFDQRSQ 714 (793)
Q Consensus 698 ~~~~v~~l~~e~~~~~q 714 (793)
..+.|..|..|+.+-++
T Consensus 227 ~~shI~~Lr~EV~RLR~ 243 (310)
T PF09755_consen 227 LSSHIRSLRQEVSRLRQ 243 (310)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44567888888876655
No 245
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=23.51 E-value=6.4e+02 Score=27.32 Aligned_cols=28 Identities=21% Similarity=0.276 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 610 DILHQRLQQYESRWSEYEQKMKSMEEVW 637 (793)
Q Consensus 610 ~~L~~~l~~~e~~~~ele~k~~~~ee~~ 637 (793)
+.|.-+++.+++++.+|..+..+++.++
T Consensus 251 E~l~ge~~~Le~rN~~LK~qa~~lerEI 278 (294)
T KOG4571|consen 251 EALLGELEGLEKRNEELKDQASELEREI 278 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555544443
No 246
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=23.47 E-value=6.9e+02 Score=25.52 Aligned_cols=68 Identities=29% Similarity=0.310 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Q 003820 585 ASFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQ---KQMRSLQSSLSIAK 652 (793)
Q Consensus 585 ~~~l~~lq~r~~~~e~~l~~~e~e~~~L~~~l~~~e~~~~ele~k~~~~ee~~q---kq~~~lq~~L~a~~ 652 (793)
...+..+.+++.-++.++...++....++++|.+.+....+-+.-++.++...+ ..|..+..+|..++
T Consensus 3 e~~va~lnrri~~leeele~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~~e~qLkEAk 73 (205)
T KOG1003|consen 3 EADVAALNRRIQLLEEELDRAQERLATALQKLEEAEQAADESERGMKVIENRAQKLEEKMEAQEAQLKEAK 73 (205)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
No 247
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=23.41 E-value=1e+03 Score=26.12 Aligned_cols=18 Identities=28% Similarity=0.132 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 003820 582 LVKASFLAELQRRVLKAE 599 (793)
Q Consensus 582 ~~~~~~l~~lq~r~~~~e 599 (793)
..+...+.+++.+..++-
T Consensus 80 r~lk~~l~evEekyrkAM 97 (302)
T PF09738_consen 80 RDLKDSLAEVEEKYRKAM 97 (302)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444455554444443
No 248
>PHA02562 46 endonuclease subunit; Provisional
Probab=23.36 E-value=5.7e+02 Score=30.10 Aligned_cols=21 Identities=29% Similarity=0.186 Sum_probs=13.4
Q ss_pred CccCCCCcchhhhhHHHHHhh
Q 003820 692 VRPMSAGLSVISRLAEEFDQR 712 (793)
Q Consensus 692 ~~~~~~~~~~v~~l~~e~~~~ 712 (793)
...+++|...--.||.-|-.|
T Consensus 466 ~~~lS~Ge~~r~~la~~l~~~ 486 (562)
T PHA02562 466 YASFSQGEKARIDLALLFTWR 486 (562)
T ss_pred hhhcChhHHHHHHHHHHHHHH
Confidence 356677776666677666543
No 249
>PF14818 DUF4482: Domain of unknown function (DUF4482)
Probab=23.08 E-value=1.6e+02 Score=28.33 Aligned_cols=30 Identities=17% Similarity=0.409 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003820 625 EYEQKMKSMEEVWQKQMRSLQSSLSIAKKS 654 (793)
Q Consensus 625 ele~k~~~~ee~~qkq~~~lq~~L~a~~~s 654 (793)
||=.+...+..+|..|+..||..++.+.+.
T Consensus 20 ELLdrfd~ER~eWE~Q~kemq~kieql~~e 49 (141)
T PF14818_consen 20 ELLDRFDRERQEWEQQWKEMQRKIEQLQKE 49 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333444444444555555555554444443
No 250
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=23.07 E-value=6.7e+02 Score=27.82 Aligned_cols=20 Identities=30% Similarity=0.529 Sum_probs=12.7
Q ss_pred HHHHHHHHHhHHHHHhHHHH
Q 003820 738 DKELRRLKQMFEAWKKDYGS 757 (793)
Q Consensus 738 ~~el~~lk~~f~~wkk~~~~ 757 (793)
.++|..|..+...=+++|..
T Consensus 241 ~~~l~~l~~~l~~l~~~~~~ 260 (344)
T PF12777_consen 241 QAELAELEEKLAALQKEYEE 260 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34566666677777777644
No 251
>PF10376 Mei5: Double-strand recombination repair protein ; InterPro: IPR018468 Mei5 is one of a pair of meiosis-specific proteins which facilitate the loading of Dmc1 on to Rad51 on DNA at double-strand breaks during recombination. Recombination is carried out by a large protein complex based around the two RecA homologues, Rad51 and Dmc1 []. This complex may play both a catalytic and a structural role in the interaction between homologous chromosomes during meiosis. Mei5 is seen to contain a coiled-coli region.
Probab=23.03 E-value=5.3e+02 Score=26.85 Aligned_cols=54 Identities=26% Similarity=0.227 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 597 KAEAALREKEEENDILHQRL-QQYESRWSEYEQKMKSMEEVWQKQMRSLQSSLSI 650 (793)
Q Consensus 597 ~~e~~l~~~e~e~~~L~~~l-~~~e~~~~ele~k~~~~ee~~qkq~~~lq~~L~a 650 (793)
+++..+.+++++...|...- .+...+..+|+..+...+...|....+|+..+..
T Consensus 142 kL~~q~~e~~e~lr~L~~~k~~r~Kn~~~~Lq~lI~Kwr~~~q~~l~eL~~~~~~ 196 (221)
T PF10376_consen 142 KLEKQVDEKEEELRRLKLVKQYRSKNDLEQLQSLIKKWRSASQEALYELQSEMSE 196 (221)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444444444444443222 1223334466666666666666666677766655
No 252
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=22.83 E-value=1.6e+03 Score=28.67 Aligned_cols=24 Identities=17% Similarity=0.026 Sum_probs=15.3
Q ss_pred HHHHHcCCCCc-----ceeecceeeeeee
Q 003820 434 AILHQFNILPE-----MYQVGYTKLFFRA 457 (793)
Q Consensus 434 ~il~~~~~~~~-----~~~vGkTKVFlr~ 457 (793)
-.|.-+++|+. .|.||.|-|+=..
T Consensus 603 ~al~Li~yd~~l~~amefvFG~tlVc~~~ 631 (1174)
T KOG0933|consen 603 LALSLIGYDDELKKAMEFVFGSTLVCDSL 631 (1174)
T ss_pred HHHHHhcCCHHHHHHHHHHhCceEEecCH
Confidence 34455555542 6899999887543
No 253
>PRK14161 heat shock protein GrpE; Provisional
Probab=22.79 E-value=5.8e+02 Score=25.65 Aligned_cols=46 Identities=11% Similarity=0.172 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 591 LQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEV 636 (793)
Q Consensus 591 lq~r~~~~e~~l~~~e~e~~~L~~~l~~~e~~~~ele~k~~~~ee~ 636 (793)
++.-+.-++.++..+++++.+++.++....++...+..|+....+.
T Consensus 17 ~~~~~~~~~~ei~~l~~e~~elkd~~lR~~AefeN~rkR~~ke~~~ 62 (178)
T PRK14161 17 AEEIVETANPEITALKAEIEELKDKLIRTTAEIDNTRKRLEKARDE 62 (178)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555556666667777777777776666666666666555544
No 254
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=22.72 E-value=1.2e+03 Score=27.23 Aligned_cols=17 Identities=29% Similarity=0.272 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 003820 580 EVLVKASFLAELQRRVL 596 (793)
Q Consensus 580 e~~~~~~~l~~lq~r~~ 596 (793)
++..+.+.+..++++..
T Consensus 234 e~skLlsql~d~qkk~k 250 (596)
T KOG4360|consen 234 ENSKLLSQLVDLQKKIK 250 (596)
T ss_pred HHHHHHHHHHhhHHHHH
Confidence 33444444444444333
No 255
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=22.71 E-value=9e+02 Score=25.34 Aligned_cols=35 Identities=23% Similarity=0.354 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 602 LREKEEENDILHQRLQQYESRWSEYEQKMKSMEEV 636 (793)
Q Consensus 602 l~~~e~e~~~L~~~l~~~e~~~~ele~k~~~~ee~ 636 (793)
|+...+....|...+.+.+.+....+.....+.++
T Consensus 55 LrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~ee 89 (230)
T PF10146_consen 55 LRQINQDINTLENIIKQAESERNKRQEKIQRLYEE 89 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444433333333333333333333
No 256
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=22.45 E-value=6.2e+02 Score=23.32 Aligned_cols=54 Identities=20% Similarity=0.234 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 003820 602 LREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSLSIAKKSL 655 (793)
Q Consensus 602 l~~~e~e~~~L~~~l~~~e~~~~ele~k~~~~ee~~qkq~~~lq~~L~a~~~sl 655 (793)
+..+..++.++++.+.+.|.+-..-...|-.--.++.+....++.++...+...
T Consensus 10 ~~~l~~~v~~lRed~r~SEdrsa~SRa~mhrRlDElV~Rv~~lEs~~~~lk~dV 63 (112)
T PF07439_consen 10 LGTLNAEVKELREDIRRSEDRSAASRASMHRRLDELVERVTTLESSVSTLKADV 63 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHhhH
Confidence 334444444444444444444444444443333333344444444444444433
No 257
>PF03978 Borrelia_REV: Borrelia burgdorferi REV protein; InterPro: IPR007126 This family consists of several REV proteins from Borrelia burgdorferi (Lyme disease spirochete) and Borrelia garinii. The function of REV is unknown although it has been shown that the gene is induced during the ingesting of host blood suggesting a role in the metabolic activation of borreliae to adapt to physiological stimuli [].
Probab=22.36 E-value=5.6e+02 Score=25.09 Aligned_cols=53 Identities=17% Similarity=0.323 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 003820 603 REKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSLSIAKKSLAI 657 (793)
Q Consensus 603 ~~~e~e~~~L~~~l~~~e~~~~ele~k~~~~ee~~qkq~~~lq~~L~a~~~sla~ 657 (793)
..-.+++.+|++.+...- ..||++++..+++.++..++.--..|.+++.....
T Consensus 50 knyk~ki~eLke~lK~~~--NAEleekll~lq~lfq~Kl~aKL~aLKAak~~i~~ 102 (160)
T PF03978_consen 50 KNYKKKINELKEDLKDVS--NAELEEKLLKLQKLFQDKLEAKLAALKAAKQKIEG 102 (160)
T ss_pred HHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 444556666666665533 33888888888888877777766677776665543
No 258
>PRK14160 heat shock protein GrpE; Provisional
Probab=22.33 E-value=5.5e+02 Score=26.56 Aligned_cols=50 Identities=20% Similarity=0.284 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 588 LAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVW 637 (793)
Q Consensus 588 l~~lq~r~~~~e~~l~~~e~e~~~L~~~l~~~e~~~~ele~k~~~~ee~~ 637 (793)
...++.+...++.++..+++++.+++.++..+.+....|..|+....+..
T Consensus 56 ~~~l~~e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~~kE~e~~ 105 (211)
T PRK14160 56 IEELKDENNKLKEENKKLENELEALKDRLLRTVAEYDNYRKRTAKEKEGI 105 (211)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666777777777778888888777777777777777776655543
No 259
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=22.26 E-value=2.6e+02 Score=30.54 Aligned_cols=39 Identities=10% Similarity=0.116 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Q 003820 597 KAEAALREKEEENDILHQRLQQYESRWSE--YEQKMKSMEE 635 (793)
Q Consensus 597 ~~e~~l~~~e~e~~~L~~~l~~~e~~~~e--le~k~~~~ee 635 (793)
.++.+-.++.+||.+|+.+++++|+++.. ..+++..+++
T Consensus 36 aLr~EN~~LKkEN~~Lk~eVerLE~e~l~s~V~E~vet~dv 76 (420)
T PF07407_consen 36 ALRMENHSLKKENNDLKIEVERLENEMLRSHVCEDVETNDV 76 (420)
T ss_pred hHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHH
Confidence 34455556666677777777777666643 5555555544
No 260
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=22.23 E-value=2.6e+02 Score=32.65 Aligned_cols=42 Identities=17% Similarity=0.254 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 586 SFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYE 627 (793)
Q Consensus 586 ~~l~~lq~r~~~~e~~l~~~e~e~~~L~~~l~~~e~~~~ele 627 (793)
+++..|+.|+.++.++-..+..||+.|+++|..+..+...++
T Consensus 302 Ey~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~En~~~k 343 (655)
T KOG4343|consen 302 EYMLGLEARLQALLSENEQLKKENATLKRQLDELVSENQRLK 343 (655)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcCcccc
Confidence 456667777778888888888888888888888776655544
No 261
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=22.11 E-value=6.2e+02 Score=31.21 Aligned_cols=53 Identities=13% Similarity=0.194 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 584 KASFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEV 636 (793)
Q Consensus 584 ~~~~l~~lq~r~~~~e~~l~~~e~e~~~L~~~l~~~e~~~~ele~k~~~~ee~ 636 (793)
..+.+..||.+..+++.++..+.+..+.++.++.+-+-++.++..+...++.+
T Consensus 104 ~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~e 156 (1265)
T KOG0976|consen 104 HESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDE 156 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 33444445544444444444444444444444444444444444444444433
No 262
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=21.77 E-value=1.4e+03 Score=29.41 Aligned_cols=36 Identities=17% Similarity=0.170 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 585 ASFLAELQRRVLKAEAALREKEEENDILHQRLQQYE 620 (793)
Q Consensus 585 ~~~l~~lq~r~~~~e~~l~~~e~e~~~L~~~l~~~e 620 (793)
...+..++.++..-..++..++++..+++..|...+
T Consensus 482 ~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~~~e 517 (1041)
T KOG0243|consen 482 KEEKEKLKSKLQNKNKELESLKEELQQAKATLKEEE 517 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555555555555555555544433
No 263
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=21.72 E-value=1.6e+03 Score=27.79 Aligned_cols=37 Identities=16% Similarity=0.218 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 594 RVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKM 630 (793)
Q Consensus 594 r~~~~e~~l~~~e~e~~~L~~~l~~~e~~~~ele~k~ 630 (793)
...-++-+++.+++|...|..++++....+.-.|..+
T Consensus 122 efE~~Khei~rl~Ee~~~l~~qlee~~rLk~iae~ql 158 (717)
T PF09730_consen 122 EFEGLKHEIKRLEEEIELLNSQLEEAARLKEIAEKQL 158 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556667777777777777766655554444433
No 264
>PF03338 Pox_J1: Poxvirus J1 protein; InterPro: IPR005006 This is a family of proteins expressed by members of the Poxviridae.
Probab=21.71 E-value=2e+02 Score=27.65 Aligned_cols=72 Identities=18% Similarity=0.199 Sum_probs=47.3
Q ss_pred ccccHHHHHHHhhcCC-chHHHhhhcccccCCCCccCCCccCCCCCCCCccHHHHHHHHHHHHHHHHhccCCeeeeecCC
Q 003820 290 DLLHLDSIELLSSCSC-HLPQIFASNMLSQSNKPVVGPLYKAGGADSQKLSVATKFKGQLFQLMQRLESTTPHFIRCIKP 368 (793)
Q Consensus 290 D~l~~~~~~ll~~S~~-~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~f~~~L~~Lm~~L~~t~~hfIrCIkP 368 (793)
++|++++-.++.-+.. .+.++|.......+. ++. .-...-.+.|--++..|+..+.-..|--++||-|
T Consensus 63 eplSe~~ral~~f~d~~~lr~lfnr~p~~~~~----~~V-------~v~~Gyl~DFV~s~~rL~ke~~~~~p~~~~YIdP 131 (145)
T PF03338_consen 63 EPLSEEFRALFEFRDMKELRKLFNRIPINVSD----GRV-------QVNKGYLSDFVISLIRLKKELGFDLPEPTTYIDP 131 (145)
T ss_pred cchhHHHHHHhhccccHHHHHHhccCCCCCCC----Cce-------EeccccHHHHHHHHHHHHHhcCCCCCCCceeeCC
Confidence 3677776667666543 477788532211110 100 0113346789999999999999999999999999
Q ss_pred CCCC
Q 003820 369 NNFQ 372 (793)
Q Consensus 369 N~~~ 372 (793)
|...
T Consensus 132 r~~~ 135 (145)
T PF03338_consen 132 RDDI 135 (145)
T ss_pred ccch
Confidence 9864
No 265
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=21.69 E-value=4.1e+02 Score=29.13 Aligned_cols=23 Identities=9% Similarity=0.239 Sum_probs=11.6
Q ss_pred CcchhhhhHHHHHhh-hccccccc
Q 003820 698 GLSVISRLAEEFDQR-SQVFGDDA 720 (793)
Q Consensus 698 ~~~~v~~l~~e~~~~-~q~~~~~~ 720 (793)
|++++|--+.+..+- +|-+++|+
T Consensus 188 ~fN~~Nv~~q~~~dvt~~KY~hni 211 (420)
T PF07407_consen 188 GFNYENVTAQNLRDVTGRKYNHNI 211 (420)
T ss_pred CcccccchHHHHHHHhhhhccccc
Confidence 445555555554432 34466666
No 266
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=21.62 E-value=5e+02 Score=22.02 Aligned_cols=20 Identities=20% Similarity=0.410 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 003820 610 DILHQRLQQYESRWSEYEQK 629 (793)
Q Consensus 610 ~~L~~~l~~~e~~~~ele~k 629 (793)
..|+..+...+....++..+
T Consensus 36 KKLr~~~~e~e~~~~~l~~~ 55 (74)
T PF12329_consen 36 KKLRAKIKELEKQIKELKKK 55 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 267
>PF14282 FlxA: FlxA-like protein
Probab=21.43 E-value=6.2e+02 Score=22.99 Aligned_cols=20 Identities=20% Similarity=0.323 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q 003820 636 VWQKQMRSLQSSLSIAKKSL 655 (793)
Q Consensus 636 ~~qkq~~~lq~~L~a~~~sl 655 (793)
+++.++..|+.+|.......
T Consensus 55 ~Lq~QI~~LqaQI~qlq~q~ 74 (106)
T PF14282_consen 55 LLQAQIQQLQAQIAQLQSQQ 74 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444555555554444443
No 268
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=21.31 E-value=1.6e+03 Score=27.80 Aligned_cols=25 Identities=24% Similarity=0.375 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 588 LAELQRRVLKAEAALREKEEENDIL 612 (793)
Q Consensus 588 l~~lq~r~~~~e~~l~~~e~e~~~L 612 (793)
+..|+.++.+..+.+..+.-|-+.|
T Consensus 488 i~qlqarikE~q~kl~~l~~Ekq~l 512 (1118)
T KOG1029|consen 488 IDQLQARIKELQEKLQKLAPEKQEL 512 (1118)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 3444444444444444333333333
No 269
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=21.12 E-value=3.3e+02 Score=32.97 Aligned_cols=27 Identities=19% Similarity=0.332 Sum_probs=14.9
Q ss_pred hcCCCHHHHHHHHHHHHHHHHh--cCeeE
Q 003820 35 IVHVSKEDQESVFAMLAAVLWL--GNVSF 61 (793)
Q Consensus 35 ~lg~~~~~~~~if~ilaaILhL--GNi~F 61 (793)
.+|-+..-...++++|++++.- |.|.+
T Consensus 32 LvG~NGsGKSTLLkiL~G~~~pd~G~I~~ 60 (638)
T PRK10636 32 LVGKNGCGKSTLLALLKNEISADGGSYTF 60 (638)
T ss_pred EECCCCCCHHHHHHHHhCCCCCCCceEEe
Confidence 4555555566666666665432 44444
No 270
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=21.00 E-value=3.4e+02 Score=22.61 Aligned_cols=21 Identities=19% Similarity=0.430 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 003820 597 KAEAALREKEEENDILHQRLQ 617 (793)
Q Consensus 597 ~~e~~l~~~e~e~~~L~~~l~ 617 (793)
+++.++..+.+++..|+.+++
T Consensus 28 ~l~~~i~~l~~e~~~L~~ei~ 48 (80)
T PF04977_consen 28 ELQKEIEELKKENEELKEEIE 48 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333334333333
No 271
>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=20.99 E-value=8.1e+02 Score=24.16 Aligned_cols=55 Identities=13% Similarity=0.210 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 591 LQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQ 645 (793)
Q Consensus 591 lq~r~~~~e~~l~~~e~e~~~L~~~l~~~e~~~~ele~k~~~~ee~~qkq~~~lq 645 (793)
++..+..+...+..+..++......+.....++.-+.+++..+...++.+.+..+
T Consensus 91 ~e~~~a~l~~~l~~~~~~ia~~~raIarn~a~id~~~er~~~l~r~~ea~~eda~ 145 (158)
T PF09486_consen 91 AEAELAALRQALRAAEDEIAATRRAIARNDARIDVCRERIDRLRRAAEAAAEDAQ 145 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhHHHhc
Confidence 3334444445555556666666666666666666666666666666655444433
No 272
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=20.91 E-value=5.9e+02 Score=22.53 Aligned_cols=41 Identities=22% Similarity=0.196 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 595 VLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEE 635 (793)
Q Consensus 595 ~~~~e~~l~~~e~e~~~L~~~l~~~e~~~~ele~k~~~~ee 635 (793)
+.+++++...+.+|++.|+.+.+.-+.+.+.++.+-+-.|.
T Consensus 25 ~~ka~~~~~kL~~en~qlk~Ek~~~~~qvkn~~vrqknee~ 65 (87)
T PF10883_consen 25 VKKAKKQNAKLQKENEQLKTEKAVAETQVKNAKVRQKNEEN 65 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Confidence 34444555556666666666666666555555555444443
No 273
>PRK03918 chromosome segregation protein; Provisional
Probab=20.73 E-value=7.6e+02 Score=30.97 Aligned_cols=9 Identities=33% Similarity=0.955 Sum_probs=4.8
Q ss_pred eeeeecccc
Q 003820 453 LFFRAGQIG 461 (793)
Q Consensus 453 VFlr~~~~~ 461 (793)
||+..|.+.
T Consensus 130 ~~~~Qg~~~ 138 (880)
T PRK03918 130 IYIRQGEID 138 (880)
T ss_pred EEEeccchH
Confidence 556555443
No 274
>PHA02047 phage lambda Rz1-like protein
Probab=20.72 E-value=6.3e+02 Score=22.75 Aligned_cols=39 Identities=18% Similarity=0.321 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 610 DILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSL 648 (793)
Q Consensus 610 ~~L~~~l~~~e~~~~ele~k~~~~ee~~qkq~~~lq~~L 648 (793)
..|..+|+..+.+...|...+..++....++..++...|
T Consensus 37 ~~la~qLE~a~~r~~~~Q~~V~~l~~kae~~t~Ei~~aL 75 (101)
T PHA02047 37 KRQTARLEALEVRYATLQRHVQAVEARTNTQRQEVDRAL 75 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555444444444333
No 275
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=20.62 E-value=9.1e+02 Score=24.58 Aligned_cols=30 Identities=37% Similarity=0.504 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 588 LAELQRRVLKAEAALREKEEENDILHQRLQ 617 (793)
Q Consensus 588 l~~lq~r~~~~e~~l~~~e~e~~~L~~~l~ 617 (793)
+.+|+.++..++.++...+.++..|..+++
T Consensus 120 ReeL~~kL~~~~~~l~~~~~ki~~Lek~le 149 (194)
T PF15619_consen 120 REELQRKLSQLEQKLQEKEKKIQELEKQLE 149 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555544443
No 276
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=20.62 E-value=6.2e+02 Score=22.66 Aligned_cols=63 Identities=16% Similarity=0.228 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 579 DEVLVKASFLAELQRRVLKAEAALREKEE---ENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQM 641 (793)
Q Consensus 579 ~e~~~~~~~l~~lq~r~~~~e~~l~~~e~---e~~~L~~~l~~~e~~~~ele~k~~~~ee~~qkq~ 641 (793)
.+...+...+..++.+.-.+.+.+..+.. +..+|..+...+..+..+++..+...++++...+
T Consensus 36 ~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~l 101 (108)
T PF02403_consen 36 QERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEELNELL 101 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 277
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=20.53 E-value=5.3e+02 Score=22.74 Aligned_cols=23 Identities=30% Similarity=0.286 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 003820 581 VLVKASFLAELQRRVLKAEAALR 603 (793)
Q Consensus 581 ~~~~~~~l~~lq~r~~~~e~~l~ 603 (793)
|......+.....++...+.++.
T Consensus 7 Id~lEekl~~cr~~le~ve~rL~ 29 (85)
T PF15188_consen 7 IDGLEEKLAQCRRRLEAVESRLR 29 (85)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHc
Confidence 44444455555555665555553
No 278
>PRK10698 phage shock protein PspA; Provisional
Probab=20.50 E-value=9.6e+02 Score=24.85 Aligned_cols=12 Identities=25% Similarity=0.301 Sum_probs=9.7
Q ss_pred CHHHHHHHHHhH
Q 003820 737 PDKELRRLKQMF 748 (793)
Q Consensus 737 ~~~el~~lk~~f 748 (793)
-++||-+||.+.
T Consensus 206 ve~ELa~LK~~~ 217 (222)
T PRK10698 206 ISEQLAALKAKM 217 (222)
T ss_pred HHHHHHHHHHHh
Confidence 688999999764
No 279
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=20.48 E-value=1.1e+03 Score=27.82 Aligned_cols=20 Identities=15% Similarity=0.164 Sum_probs=11.8
Q ss_pred CCCccChHHHHHHhhccccc
Q 003820 402 FPTRMSHQKFARRYGFLLLE 421 (793)
Q Consensus 402 yp~r~~~~eF~~RY~~L~~~ 421 (793)
-|..+||.+=+..-++|...
T Consensus 281 ~~~svpy~~a~~n~ril~ss 300 (518)
T PF10212_consen 281 CPESVPYEEALANRRILLSS 300 (518)
T ss_pred CCccCChHHHHhhhHHHhhh
Confidence 45566666666655555543
No 280
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=20.47 E-value=9.2e+02 Score=24.58 Aligned_cols=17 Identities=12% Similarity=0.024 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 003820 604 EKEEENDILHQRLQQYE 620 (793)
Q Consensus 604 ~~e~e~~~L~~~l~~~e 620 (793)
.+..++..|+++...+.
T Consensus 99 ~L~~~i~~Lqeen~kl~ 115 (193)
T PF14662_consen 99 SLVAEIETLQEENGKLL 115 (193)
T ss_pred HHHHHHHHHHHHHhHHH
Confidence 33333333333333333
No 281
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=20.43 E-value=7.7e+02 Score=26.06 Aligned_cols=75 Identities=20% Similarity=0.325 Sum_probs=46.3
Q ss_pred ccCCCCcchhhhhHHHHHhhhcccccccceeeeecC------CcccCC-CCCHHHHHHHHHhHHHHHhHHHHhhHHHHHH
Q 003820 693 RPMSAGLSVISRLAEEFDQRSQVFGDDAKFLVEVKS------GQVEAS-LNPDKELRRLKQMFEAWKKDYGSRLRETKVI 765 (793)
Q Consensus 693 ~~~~~~~~~v~~l~~e~~~~~q~~~~~~~~~~e~~~------~~~~~~-~~~~~el~~lk~~f~~wkk~~~~rlr~~~~~ 765 (793)
.++.....-+.++-+|++.|. |..-=...-+.+. ..+... ..|-+|.+.|+.....+=.+|.++|...+..
T Consensus 123 ~~l~~~l~ea~~mL~emr~r~--f~~~~~~Ae~El~~A~~LL~~v~~~~~~~~~~~~~l~~~i~~~L~~~~~kL~Dl~~~ 200 (264)
T PF06008_consen 123 EDLQRALAEAQRMLEEMRKRD--FTPQRQNAEDELKEAEDLLSRVQKWFQKPQQENESLAEAIRDDLNDYNAKLQDLRDL 200 (264)
T ss_pred HHHHHHHHHHHHHHHHHHhcc--chhHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555677777776662 4432111111110 001111 3488899999999999999999999999888
Q ss_pred Hhhh
Q 003820 766 LNKL 769 (793)
Q Consensus 766 ~~~~ 769 (793)
|+.-
T Consensus 201 l~eA 204 (264)
T PF06008_consen 201 LNEA 204 (264)
T ss_pred HHHH
Confidence 8764
No 282
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=20.41 E-value=2.1e+03 Score=28.86 Aligned_cols=29 Identities=7% Similarity=0.042 Sum_probs=20.5
Q ss_pred CHHHHHHHHHhHHHHHhHHHHhhHHHHHH
Q 003820 737 PDKELRRLKQMFEAWKKDYGSRLRETKVI 765 (793)
Q Consensus 737 ~~~el~~lk~~f~~wkk~~~~rlr~~~~~ 765 (793)
-..+++.+...-+.|++....+.+...+.
T Consensus 457 ~~~~~~~~~~el~~~~~~~~e~~~~~~~~ 485 (1353)
T TIGR02680 457 THAAARARRDELDEEAEQAAARAELADEA 485 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777788888888888777664433
No 283
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=20.40 E-value=8.9e+02 Score=24.39 Aligned_cols=61 Identities=16% Similarity=0.256 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 003820 595 VLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSLSIAKKSL 655 (793)
Q Consensus 595 ~~~~e~~l~~~e~e~~~L~~~l~~~e~~~~ele~k~~~~ee~~qkq~~~lq~~L~a~~~sl 655 (793)
-..+..++..+..+...+..+|..-+..|..-+.....+-..-+..+-.|..++.+.+..+
T Consensus 97 N~~L~~dl~klt~~~~~l~~eL~~ke~~~~~ee~~~~~y~~~eh~rll~LWr~v~~lRr~f 157 (182)
T PF15035_consen 97 NEALQEDLQKLTQDWERLRDELEQKEAEWREEEENFNQYLSSEHSRLLSLWREVVALRRQF 157 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHH
Confidence 3344444455555555555666666666666666655554444444555555555555544
No 284
>PF12004 DUF3498: Domain of unknown function (DUF3498); InterPro: IPR021887 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with PF00616 from PFAM, PF00168 from PFAM. This domain has two conserved sequence motifs: DLQ and PLSFQNP. ; PDB: 3BXJ_B.
Probab=20.32 E-value=34 Score=39.77 Aligned_cols=48 Identities=29% Similarity=0.357 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 603 REKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSLSI 650 (793)
Q Consensus 603 ~~~e~e~~~L~~~l~~~e~~~~ele~k~~~~ee~~qkq~~~lq~~L~a 650 (793)
+.-|+|+..|++.|........|||.++..-|+.++|-+.+.+..|+.
T Consensus 372 e~YEqEI~~LkErL~~S~rkLeEyErrLl~QEqqt~Kll~qyq~RLed 419 (495)
T PF12004_consen 372 EKYEQEIQSLKERLRMSHRKLEEYERRLLSQEQQTQKLLLQYQARLED 419 (495)
T ss_dssp ------------------------------------------------
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhh
Confidence 346678888888888888888888888888777776665555555544
Done!