Query 003820
Match_columns 793
No_of_seqs 402 out of 2101
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 05:09:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003820.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003820hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dfs_A Myosin-5A; myosin-V, in 100.0 5E-141 2E-145 1298.9 56.8 649 2-653 281-974 (1080)
2 1kk8_A Myosin heavy chain, str 100.0 2E-128 6E-133 1153.9 46.0 508 2-540 305-825 (837)
3 1i84_S Smooth muscle myosin he 100.0 3E-126 1E-130 1192.1 54.5 516 2-540 308-838 (1184)
4 1w7j_A Myosin VA; motor protei 100.0 3E-126 1E-130 1129.4 40.7 493 2-496 281-793 (795)
5 4anj_A Unconventional myosin-V 100.0 5E-124 2E-128 1133.3 39.9 540 2-551 267-854 (1052)
6 2ycu_A Non muscle myosin 2C, a 100.0 1E-121 4E-126 1120.2 46.7 528 2-532 278-824 (995)
7 1g8x_A Myosin II heavy chain f 100.0 2E-120 5E-125 1108.2 54.3 500 2-533 300-808 (1010)
8 1lkx_A Myosin IE heavy chain; 100.0 1E-121 5E-126 1076.0 37.6 455 2-471 222-696 (697)
9 4db1_A Myosin-7; S1DC, cardiac 100.0 4E-121 1E-125 1080.4 38.6 464 2-471 306-781 (783)
10 2v26_A Myosin VI; calmodulin-b 100.0 4E-120 1E-124 1077.1 39.3 475 2-485 263-784 (784)
11 1w9i_A Myosin II heavy chain; 100.0 5E-120 2E-124 1068.0 37.7 458 2-475 300-766 (770)
12 2dfs_A Myosin-5A; myosin-V, in 99.8 6E-18 2E-22 208.5 19.5 185 471-656 816-1040(1080)
13 2ix7_C Myosin-5A; contractIle 99.0 1.9E-10 6.5E-15 92.1 2.7 51 472-523 6-56 (58)
14 2ix7_C Myosin-5A; contractIle 98.9 2E-09 6.8E-14 86.2 7.4 51 519-569 4-54 (58)
15 1n2d_C IQ2 and IQ3 motifs from 98.9 2E-09 7E-14 82.6 6.1 46 493-539 2-47 (48)
16 1n2d_C IQ2 and IQ3 motifs from 98.7 3.3E-08 1.1E-12 75.8 6.4 42 521-562 4-47 (48)
17 1i84_S Smooth muscle myosin he 98.3 7.9E-06 2.7E-10 102.9 18.1 46 519-564 791-839 (1184)
18 2bl0_A Major plasmodial myosin 97.8 1.5E-05 5.3E-10 64.5 4.7 45 494-538 4-48 (63)
19 1wdc_A Scallop myosin; calcium 97.8 2E-05 6.8E-10 64.1 5.2 46 494-539 6-51 (64)
20 1wdc_A Scallop myosin; calcium 96.9 0.0015 5.3E-08 52.8 6.2 43 521-563 7-52 (64)
21 2bl0_A Major plasmodial myosin 96.9 0.0013 4.3E-08 53.1 5.6 43 521-563 5-50 (63)
22 1kk8_A Myosin heavy chain, str 96.8 0.0022 7.7E-08 77.0 8.9 48 519-566 778-828 (837)
23 3gn4_A Myosin-VI; unconvention 96.6 0.01 3.5E-07 55.5 10.1 33 514-546 39-71 (148)
24 3gn4_A Myosin-VI; unconvention 95.5 0.1 3.5E-06 48.8 11.1 21 543-563 45-65 (148)
25 2kxw_B Sodium channel protein 92.8 0.062 2.1E-06 35.4 2.4 19 519-537 5-23 (27)
26 2l53_B CAM, voltage-gated sodi 92.8 0.086 2.9E-06 35.8 3.1 21 519-539 5-25 (31)
27 2l53_B CAM, voltage-gated sodi 88.3 0.3 1E-05 33.2 2.5 20 544-563 7-26 (31)
28 2kxw_B Sodium channel protein 87.0 0.37 1.3E-05 31.7 2.3 19 544-562 7-25 (27)
29 4anj_A Unconventional myosin-V 86.8 0.67 2.3E-05 57.0 6.3 38 522-560 777-814 (1052)
30 3a7p_A Autophagy protein 16; c 83.0 19 0.00066 33.5 12.8 68 580-647 69-136 (152)
31 1w7j_A Myosin VA; motor protei 77.4 2 6.9E-05 51.3 5.4 26 521-546 769-794 (795)
32 3hnw_A Uncharacterized protein 73.6 31 0.0011 31.8 11.3 44 591-634 80-123 (138)
33 2eqb_B RAB guanine nucleotide 73.4 26 0.00089 30.2 9.8 25 604-628 23-47 (97)
34 3na7_A HP0958; flagellar bioge 71.5 57 0.002 33.1 14.1 71 579-649 90-160 (256)
35 3tnu_B Keratin, type II cytosk 70.4 31 0.0011 31.3 10.5 14 590-603 40-53 (129)
36 1ic2_A Tropomyosin alpha chain 69.9 46 0.0016 27.5 11.8 21 603-623 37-57 (81)
37 3o0z_A RHO-associated protein 68.1 60 0.002 30.8 12.0 63 596-658 93-155 (168)
38 2oqq_A Transcription factor HY 68.0 19 0.00064 25.9 6.3 27 598-624 8-34 (42)
39 3cve_A Homer protein homolog 1 67.0 46 0.0016 27.1 9.4 39 599-637 6-44 (72)
40 2jee_A YIIU; FTSZ, septum, coi 67.0 54 0.0019 27.3 11.3 29 589-617 9-37 (81)
41 3tnu_A Keratin, type I cytoske 66.9 25 0.00084 32.1 9.0 15 626-640 89-103 (131)
42 2v71_A Nuclear distribution pr 66.2 32 0.0011 33.4 10.0 50 599-648 48-97 (189)
43 3qh9_A Liprin-beta-2; coiled-c 64.0 40 0.0014 27.9 8.5 36 602-637 21-56 (81)
44 3cvf_A Homer-3, homer protein 63.8 27 0.00092 29.0 7.6 38 600-637 13-50 (79)
45 3bas_A Myosin heavy chain, str 63.2 29 0.001 29.4 8.1 57 580-636 15-71 (89)
46 3bas_A Myosin heavy chain, str 61.3 74 0.0025 26.8 12.1 35 600-634 14-48 (89)
47 2yy0_A C-MYC-binding protein; 60.4 8.1 0.00028 29.6 3.7 30 602-631 21-50 (53)
48 2lw1_A ABC transporter ATP-bin 59.2 64 0.0022 27.1 9.6 13 625-637 67-79 (89)
49 3oja_B Anopheles plasmodium-re 58.9 1.7E+02 0.0057 33.1 16.4 55 583-637 506-560 (597)
50 4dck_A Sodium channel protein 58.9 8.3 0.00028 36.9 4.3 23 519-541 129-151 (168)
51 3na7_A HP0958; flagellar bioge 57.9 1E+02 0.0035 31.2 12.8 65 581-645 99-163 (256)
52 2fxo_A Myosin heavy chain, car 57.1 1.1E+02 0.0038 27.5 12.0 27 606-632 68-94 (129)
53 1wt6_A Myotonin-protein kinase 55.4 88 0.003 25.9 10.2 33 603-635 34-66 (81)
54 3cvf_A Homer-3, homer protein 54.9 87 0.003 25.9 9.2 55 591-645 11-65 (79)
55 1ci6_A Transcription factor AT 54.0 67 0.0023 25.3 8.2 32 595-626 25-56 (63)
56 2fxo_A Myosin heavy chain, car 54.0 1.2E+02 0.0043 27.2 12.0 51 597-651 73-123 (129)
57 1ik9_A DNA repair protein XRCC 52.6 90 0.0031 30.8 10.9 64 591-654 137-204 (213)
58 2ycu_A Non muscle myosin 2C, a 52.5 11 0.00036 46.4 4.9 43 523-565 767-809 (995)
59 2oqq_A Transcription factor HY 52.5 60 0.0021 23.3 6.7 25 591-615 8-32 (42)
60 3ol1_A Vimentin; structural ge 51.6 1.3E+02 0.0045 26.7 12.2 37 601-637 63-99 (119)
61 3qh9_A Liprin-beta-2; coiled-c 51.1 96 0.0033 25.6 8.7 38 585-622 32-69 (81)
62 1t2k_D Cyclic-AMP-dependent tr 50.7 58 0.002 25.3 7.4 31 596-626 25-55 (61)
63 1gd2_E Transcription factor PA 50.1 33 0.0011 27.7 5.9 36 588-623 31-66 (70)
64 1wt6_A Myotonin-protein kinase 49.9 1.1E+02 0.0038 25.3 9.5 34 604-637 28-61 (81)
65 2wt7_A Proto-oncogene protein 49.5 71 0.0024 25.1 7.7 29 596-624 26-54 (63)
66 3vkg_A Dynein heavy chain, cyt 49.4 6.3E+02 0.021 35.1 21.2 35 740-774 2323-2358(3245)
67 1hjb_A Ccaat/enhancer binding 49.4 47 0.0016 28.1 6.9 32 596-627 39-70 (87)
68 2ocy_A RAB guanine nucleotide 49.1 1.7E+02 0.0058 27.3 11.9 71 587-657 66-147 (154)
69 3u1c_A Tropomyosin alpha-1 cha 48.3 1.3E+02 0.0045 25.9 12.9 40 594-633 31-70 (101)
70 3oja_B Anopheles plasmodium-re 48.2 1E+02 0.0034 35.0 12.1 46 591-636 521-566 (597)
71 1x79_B RAB GTPase binding effe 47.5 99 0.0034 27.3 9.0 52 606-657 44-95 (112)
72 2lw1_A ABC transporter ATP-bin 46.8 78 0.0027 26.6 8.2 25 610-634 59-83 (89)
73 4emc_A Monopolin complex subun 46.1 1.2E+02 0.0042 29.2 10.0 44 588-631 22-65 (190)
74 2v66_B Nuclear distribution pr 46.0 1.6E+02 0.0054 26.0 11.6 55 582-636 38-92 (111)
75 3cve_A Homer protein homolog 1 44.8 1.2E+02 0.0043 24.5 9.8 53 593-645 7-59 (72)
76 3mq9_A Bone marrow stromal ant 44.1 2E+02 0.0067 31.5 13.4 13 588-600 406-418 (471)
77 4emc_A Monopolin complex subun 43.9 78 0.0027 30.5 8.3 49 589-637 9-57 (190)
78 1gk4_A Vimentin; intermediate 43.8 83 0.0028 26.2 7.7 15 643-657 65-79 (84)
79 2w83_C C-JUN-amino-terminal ki 43.1 1.2E+02 0.0042 24.7 8.1 41 597-637 34-74 (77)
80 4etp_A Kinesin-like protein KA 42.0 62 0.0021 35.3 8.5 55 597-655 7-61 (403)
81 2v4h_A NF-kappa-B essential mo 40.7 1.9E+02 0.0064 25.4 11.5 9 643-651 94-102 (110)
82 1gd2_E Transcription factor PA 40.7 80 0.0028 25.5 6.8 10 597-606 33-42 (70)
83 2v71_A Nuclear distribution pr 39.8 2.3E+02 0.0079 27.3 11.1 31 605-635 93-123 (189)
84 1go4_E MAD1 (mitotic arrest de 39.7 1.8E+02 0.0063 25.1 9.3 21 637-657 73-93 (100)
85 2jee_A YIIU; FTSZ, septum, coi 39.4 1.6E+02 0.0056 24.4 11.9 32 598-629 25-56 (81)
86 4etp_A Kinesin-like protein KA 38.6 75 0.0025 34.6 8.5 43 584-626 8-50 (403)
87 3m91_A Proteasome-associated A 38.2 1.3E+02 0.0044 22.8 7.2 25 598-622 14-38 (51)
88 2h5n_A Hypothetical protein PG 38.2 17 0.00058 33.2 2.8 80 17-96 31-127 (133)
89 2efr_A General control protein 37.7 2.6E+02 0.0088 26.1 11.2 51 588-638 79-129 (155)
90 1gu4_A CAAT/enhancer binding p 37.0 96 0.0033 25.6 6.9 31 596-626 39-69 (78)
91 3tnu_B Keratin, type II cytosk 36.9 2.3E+02 0.0079 25.3 10.7 20 622-641 83-102 (129)
92 1nkp_B MAX protein, MYC proto- 36.5 90 0.0031 25.7 6.8 37 581-617 42-78 (83)
93 4e61_A Protein BIM1; EB1-like 35.3 2.3E+02 0.0077 24.8 9.4 51 589-639 7-57 (106)
94 1jnm_A Proto-oncogene C-JUN; B 35.3 57 0.0019 25.5 5.0 28 596-623 25-52 (62)
95 3swk_A Vimentin; cytoskeleton, 34.1 2.1E+02 0.007 23.9 8.9 36 602-637 44-79 (86)
96 1fmh_A General control protein 34.1 92 0.0031 20.4 4.8 23 597-619 5-27 (33)
97 2pnv_A Small conductance calci 33.8 72 0.0025 23.2 4.9 30 588-617 11-40 (43)
98 3vkg_A Dynein heavy chain, cyt 33.7 5.5E+02 0.019 35.7 16.9 72 584-655 1932-2003(3245)
99 3mov_A Lamin-B1; LMNB1, B-type 33.6 35 0.0012 29.3 3.8 14 644-657 77-90 (95)
100 3ra3_B P2F; coiled coil domain 33.6 36 0.0012 21.5 2.7 21 604-624 4-24 (28)
101 3efg_A Protein SLYX homolog; x 33.2 1.2E+02 0.0039 25.1 6.8 24 594-617 15-38 (78)
102 2yy0_A C-MYC-binding protein; 33.2 40 0.0014 25.7 3.7 21 595-615 28-48 (53)
103 1t2k_D Cyclic-AMP-dependent tr 32.6 1.6E+02 0.0053 22.8 7.2 16 614-629 29-44 (61)
104 3dvk_B Voltage-dependent R-typ 32.5 18 0.0006 22.7 1.2 16 521-536 7-22 (23)
105 1nkp_A C-MYC, MYC proto-oncoge 32.5 2E+02 0.0067 24.1 8.3 39 581-619 47-85 (88)
106 2eqb_B RAB guanine nucleotide 32.2 2E+02 0.0068 24.7 8.2 29 588-616 35-63 (97)
107 2v4h_A NF-kappa-B essential mo 32.1 2.6E+02 0.0089 24.5 12.0 21 628-648 86-106 (110)
108 1x8y_A Lamin A/C; structural p 31.9 53 0.0018 27.6 4.6 13 644-656 68-80 (86)
109 1ic2_A Tropomyosin alpha chain 31.7 2.1E+02 0.0073 23.4 12.1 60 590-653 17-76 (81)
110 1nlw_A MAD protein, MAX dimeri 31.3 1.2E+02 0.0042 25.0 6.7 38 580-617 41-78 (80)
111 3q8t_A Beclin-1; autophagy, AT 30.8 2.5E+02 0.0086 23.9 12.8 37 586-622 11-47 (96)
112 1ci6_A Transcription factor AT 30.3 2E+02 0.0067 22.5 7.5 28 609-636 25-52 (63)
113 1f5n_A Interferon-induced guan 29.9 5.5E+02 0.019 29.2 14.2 15 152-166 90-104 (592)
114 3u06_A Protein claret segregat 29.5 1.4E+02 0.0047 32.6 8.7 55 597-655 7-61 (412)
115 1lwu_C Fibrinogen gamma chain; 29.4 1.3E+02 0.0046 31.6 8.2 40 595-634 14-53 (323)
116 3u59_A Tropomyosin beta chain; 29.3 2.7E+02 0.0092 23.8 12.5 41 594-634 31-71 (101)
117 3efg_A Protein SLYX homolog; x 29.1 1.6E+02 0.0054 24.2 6.9 14 642-655 45-58 (78)
118 3u59_A Tropomyosin beta chain; 28.4 2.8E+02 0.0095 23.7 12.9 41 594-634 24-64 (101)
119 1fmh_A General control protein 28.4 1.3E+02 0.0043 19.7 4.8 25 590-614 5-29 (33)
120 3he5_A Synzip1; heterodimeric 27.9 1.6E+02 0.0056 20.8 6.8 23 595-617 5-27 (49)
121 2w6b_A RHO guanine nucleotide 27.8 2E+02 0.0069 21.9 7.4 39 595-633 12-50 (56)
122 3u1c_A Tropomyosin alpha-1 cha 26.4 3.1E+02 0.01 23.5 12.7 44 593-636 23-66 (101)
123 1dh3_A Transcription factor CR 26.4 1.4E+02 0.0046 22.8 5.6 26 595-620 24-49 (55)
124 2ou3_A Tellurite resistance pr 26.2 1.2E+02 0.0041 28.1 6.6 74 17-96 42-137 (161)
125 1wle_A Seryl-tRNA synthetase; 26.2 4E+02 0.014 29.7 11.9 9 702-710 225-233 (501)
126 3swk_A Vimentin; cytoskeleton, 25.9 2.9E+02 0.0098 23.0 9.6 38 595-632 16-53 (86)
127 1lwu_C Fibrinogen gamma chain; 25.9 1.6E+02 0.0055 31.0 8.0 36 594-629 20-55 (323)
128 1f5n_A Interferon-induced guan 25.1 2E+02 0.0067 33.0 9.3 11 343-353 261-271 (592)
129 3m91_A Proteasome-associated A 25.1 2.2E+02 0.0076 21.4 7.0 9 609-617 18-26 (51)
130 2efr_A General control protein 24.9 4.3E+02 0.015 24.6 12.0 50 581-630 79-128 (155)
131 2dgc_A Protein (GCN4); basic d 24.5 1.6E+02 0.0055 23.1 5.9 20 597-616 34-53 (63)
132 4dck_A Sodium channel protein 24.2 42 0.0014 32.0 2.9 21 544-564 131-151 (168)
133 2yko_A LINE-1 ORF1P; RNA-bindi 24.1 1.4E+02 0.0048 29.8 6.8 44 592-635 5-48 (233)
134 2ocy_A RAB guanine nucleotide 24.0 3.7E+02 0.013 25.1 9.2 40 586-625 58-97 (154)
135 4h22_A Leucine-rich repeat fli 23.6 1.6E+02 0.0056 25.5 6.2 14 642-655 68-81 (103)
136 3qne_A Seryl-tRNA synthetase, 23.6 4.9E+02 0.017 28.9 11.9 6 724-729 205-210 (485)
137 2w83_C C-JUN-amino-terminal ki 23.3 2E+02 0.007 23.4 6.3 44 588-631 32-75 (77)
138 3o0z_A RHO-associated protein 23.2 4.8E+02 0.016 24.6 17.1 40 588-627 92-138 (168)
139 3mq9_A Bone marrow stromal ant 22.9 7.4E+02 0.025 26.7 14.9 19 600-618 443-461 (471)
140 1kd8_A GABH AIV, GCN4 acid bas 22.7 2E+02 0.0067 20.0 5.5 19 599-617 7-25 (36)
141 3ghg_A Fibrinogen alpha chain; 22.4 3.9E+02 0.013 29.8 10.3 85 559-643 70-160 (562)
142 3u06_A Protein claret segregat 22.2 2E+02 0.0069 31.3 8.3 49 583-631 7-55 (412)
143 2e7s_A RAB guanine nucleotide 21.8 1.8E+02 0.0061 26.5 6.4 23 594-616 61-83 (135)
144 3bxl_B CAM, voltage-dependent 21.7 59 0.002 20.9 2.2 18 521-538 3-20 (26)
145 3iox_A AGI/II, PA; alpha helix 21.6 5.9E+02 0.02 28.2 11.6 21 614-634 73-93 (497)
146 2l5g_B Putative uncharacterize 21.3 2.2E+02 0.0077 20.5 5.4 22 614-635 16-37 (42)
147 3iox_A AGI/II, PA; alpha helix 20.7 8.2E+02 0.028 27.0 12.5 38 616-657 68-105 (497)
148 1go4_E MAD1 (mitotic arrest de 20.4 4.2E+02 0.014 22.9 8.7 16 632-647 75-90 (100)
149 1m1j_B Fibrinogen beta chain; 20.4 5.4E+02 0.018 28.4 11.2 10 698-707 299-308 (464)
150 3iv1_A Tumor susceptibility ge 20.2 3.6E+02 0.012 22.1 12.1 34 620-653 41-74 (78)
No 1
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=100.00 E-value=5.3e-141 Score=1298.92 Aligned_cols=649 Identities=35% Similarity=0.598 Sum_probs=533.8
Q ss_pred CCccCccccCCCccccCCcccHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhcCeeEEeeCCCCceeecCchHHHHH
Q 003820 2 SAKEYKYLRQSSCYSINGVDDAEQFRIVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNENHVEPVADEGLITV 81 (793)
Q Consensus 2 ~~~~y~yL~~~~~~~~~~~dD~~~f~~~~~Al~~lg~~~~~~~~if~ilaaILhLGNi~F~~~~~~~~~~~~~~~~l~~~ 81 (793)
+|++|+||++|+|..++|+||+++|..|+.||++|||+++++.+||+|||||||||||+|...+++....+.+++.++.+
T Consensus 281 ~~~~y~yl~~~~~~~~~~~dD~~~f~~~~~A~~~lg~~~~e~~~i~~ilaaILhLGni~F~~~~~~~~~~~~~~~~l~~~ 360 (1080)
T 2dfs_A 281 NANYFHYTKQGGSPVIDGIDDAKEMVNTRQACTLLGISDSYQMGIFRILAGILHLGNVEFASRDSDSCAIPPKHDPLTIF 360 (1080)
T ss_dssp CTTTCTTTSTTSCCSCTTCCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCCCEEETTTEEECCSSCHHHHHH
T ss_pred CHHhcCcccCCCCCCCCCccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCceEEecCCcceeecCChHHHHHH
Confidence 58899999999999999999999999999999999999999999999999999999999987665433333688899999
Q ss_pred HHHhCCCHHHHHHHHccceeeecCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCcceeEEeecC
Q 003820 82 AKLIGCDIGELKLALSTRKMRVGNDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIY 161 (793)
Q Consensus 82 a~LLgv~~~~L~~~L~~~~i~~~~e~i~~~lt~~qA~~~rdaLak~LY~rLF~wlV~~IN~~l~~~~~~~~~~IgILDI~ 161 (793)
|.||||++++|.++||++++.+++|.|++++|++||.++||||||+||++||+|||.+||.+|.++. ....+|||||||
T Consensus 361 a~LLgv~~~~L~~~l~~~~~~~~~e~i~~~~~~~qa~~~rdalak~lY~~LF~wlV~~iN~~l~~~~-~~~~~IgvLDI~ 439 (1080)
T 2dfs_A 361 CDLMGVDYEEMAHWLCHRKLATATETYIKPISKLHAINARDALAKHIYANLFNWIVDHVNKALHSTV-KQHSFIGVLDIY 439 (1080)
T ss_dssp HHHHTCCHHHHHHHHHEEEECC----EEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSS-CCCEEEEEEEEC
T ss_pred HHHhCCCHHHHHHHhcccEEEeCCceEEeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccCceEEeeccC
Confidence 9999999999999999999999999999999999999999999999999999999999999998654 346799999999
Q ss_pred CCccCCCCChhHHHHHHhhHHHHHHHHHHhhHHHHHHHhhcCCcccccccCCchhHHHhhhcCCCccccccccccCCCCC
Q 003820 162 GFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEKKPLGLLSLLDEESTFPNG 241 (793)
Q Consensus 162 GFE~f~~NsfEQlcINyaNEkLq~~f~~~~f~~eqeeY~~EgI~w~~i~f~dN~~~ldLie~kp~Gil~lLDee~~~p~~ 241 (793)
|||+|+.|||||||||||||+|||+||+|+|+.||+||.+|||+|++|+|.||++|||||+++ .|||+||||||++|+|
T Consensus 440 GFE~f~~NsFEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~dn~~~idlie~~-~Gil~lLdee~~~p~~ 518 (1080)
T 2dfs_A 440 GFETFEINSFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIEAK-MGVLDLLDEECKMPKG 518 (1080)
T ss_dssp CCCCCSSBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTCCCCCCCHHHHHHHHST-TSHHHHHHHHTTSTTC
T ss_pred CccccCcCCHHHHHHHhhhHHHHHHHHHHhhHHHHHHHhhcCCccccccccccHHHHHHHhcC-CceeeeccccccCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999997 9999999999999999
Q ss_pred CcHHHHHHHHHHc-CCCCccccCC--CCCcEEEecCccccccccchhhhccccccHHHHHHHhhc-CCchH-HHhhhccc
Q 003820 242 TDLTFANKLKQHL-NSNPCFRGER--DKSFTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSC-SCHLP-QIFASNML 316 (793)
Q Consensus 242 tD~~f~~kl~~~~-~~~~~~~~~~--~~~F~I~HyaG~V~Y~v~gfleKN~D~l~~~~~~ll~~S-~~~~~-~lf~~~~~ 316 (793)
||.+|++||++.+ ++||+|..|+ ...|+|+||||+|+|++.|||+||+|+|+++++++|.+| +++++ .+|+....
T Consensus 519 tD~~f~~kl~~~~~~~~~~f~~p~~~~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~~~~~v~~lf~~~~~ 598 (1080)
T 2dfs_A 519 SDDTWAQKLYNTHLNKCALFEKPRLSNKAFIIKHFADKVEYQCEGFLEKNKDTVYEEQIKVLKSSKKFKLLPELFQDEEK 598 (1080)
T ss_dssp CHHHHHHHHHHHHBTTBSSEECCTTCSSEEEEECSSCEEEEECTTHHHHHBCCCCHHHHHHHHTCSSCSHHHHSCC----
T ss_pred ChHHHHHHHHHHhhcCCCCccCCCCCCCceEEEecceEEEEehhhHHHhccccccHHHHHHHHcccccHHHHHHhccccc
Confidence 9999999999987 9999998875 579999999999999999999999999999999999999 99875 57864331
Q ss_pred ccC---CC---------CccCCCc--cCCCCCCCCccHHHHHHHHHHHHHHHHhccCCeeeeecCCCCCCCCCccchhHH
Q 003820 317 SQS---NK---------PVVGPLY--KAGGADSQKLSVATKFKGQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLV 382 (793)
Q Consensus 317 ~~~---~~---------~~~~~~~--~~~~~~~~~~tv~~~f~~~L~~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V 382 (793)
..+ .. ....|.+ .+++...+++||+++|+.||+.||++|.+|+||||||||||+.+.|+.||..+|
T Consensus 599 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~fk~sL~~Lm~~L~~t~phfVRCIkPN~~k~p~~fd~~~V 678 (1080)
T 2dfs_A 599 AISPTSATPSGRVPLSRTPVKPAKARPGQTSKEHKKTVGHQFRNSLHLLMETLNATTPHYVRCIKPNDFKFPFTFDEKRA 678 (1080)
T ss_dssp ---------------------------------CCCBHHHHHHHHHHHHHHHHHSSEEEEEEEECCCSSCCTTCCCHHHH
T ss_pred ccccccccccccccccccccccccccccccccCCCCcHHHHHHHHHHHHHHHHHhcCCeeEEEecCCCCCCchhcCHHhh
Confidence 110 00 0000000 001223457899999999999999999999999999999999999999999999
Q ss_pred HHHhhhhChhHHHHHHhcCCCCccChHHHHHHhhccccccCCCCChHHHHHHHHHHcCCCCcceeecceeeeeeeccccc
Q 003820 383 LQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFLLLESVASQDPLSVSVAILHQFNILPEMYQVGYTKLFFRAGQIGM 462 (793)
Q Consensus 383 ~~QLr~~gvle~vri~r~Gyp~r~~~~eF~~RY~~L~~~~~~~~d~~~~~~~il~~~~~~~~~~~vGkTKVFlr~~~~~~ 462 (793)
++||||+||||+|||+|+|||+|++|.+|+.||++|+|...+..|+++.|+.||..++++++.|++|+|||||+.+++..
T Consensus 679 ~~QLr~~GvlE~iri~r~Gyp~R~~~~eF~~RY~~L~~~~~~~~d~k~~~~~il~~~~~~~~~~~~G~TKVF~r~g~l~~ 758 (1080)
T 2dfs_A 679 VQQLRACGVLETIRISAAGFPSRWTYQEFFSRYRVLMKQKDVLSDRKQTCKNVLEKLILDKDKYQFGKTKIFFRAGQVAY 758 (1080)
T ss_dssp HHHHHTTTHHHHHHHHTTSCCEEEEHHHHHHHHTTTSCGGGCCSSHHHHHHHHHTTTSCCGGGEEECSSEEEECTTHHHH
T ss_pred HHHHhhcccHHHHhHHhcCCCchhhHHHHHHHHHHHCCccCCCCChHHHHHHHHHHhcCChhhheeccccchhccchhhH
Confidence 99999999999999999999999999999999999999866655999999999999999999999999999999999999
Q ss_pred ccccccccch-hhHhhhhhhcccccchhhcccccchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHh
Q 003820 463 LEDTRNRTLH-GILRVQSCFRGHQARLCLKELRRGIVALQSFIRGEKIRKEYALVLQRHRAAVVIQRQIKSRVARQKLKN 541 (793)
Q Consensus 463 LE~~R~~~l~-aa~~IQ~~~Rg~~~R~~~~~~~~a~i~IQs~~Rg~~aRr~~~~l~~~~~AAi~IQ~~~R~~~~R~~~~~ 541 (793)
||.+|...+. +|+.||++||||++|++|++++.+++.||++|||+++|+.+..++ +.+||+.||++||||++|+.|..
T Consensus 759 LE~~R~~~l~~aa~~IQa~~Rg~l~Rk~~~~~r~aai~IQ~~~Rg~~aR~~~~~lr-~~~AAi~IQs~~Rg~~~Rk~y~~ 837 (1080)
T 2dfs_A 759 LEKIRADKLRAACIRIQKTIRGWLMRKKYMRMRRAAITIQRYVRGHQARCYATFLR-RTRAAIIIQKFQRMYVVRKRYQC 837 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhcccccc-cchhHHHHHHHHhhHHHHHHHHH
Confidence 9999988775 677999999999999999999999999999999999999998776 67899999999999999999999
Q ss_pred hhhHHHHHHHHHhhHHHHhhhhhhhhhHh--------------HhhhcCChhHHHHHHHHHHHHHHHHH-----------
Q 003820 542 IKYSSIMIQSVIRGWLVRRCSGDICLLKS--------------VESKGNDSDEVLVKASFLAELQRRVL----------- 596 (793)
Q Consensus 542 ~r~aai~IQs~~Rg~~aRr~~~~l~~~~~--------------~~~~~~~~~e~~~~~~~l~~lq~r~~----------- 596 (793)
.+.+++.||+.|||+++|+.+..++...+ ..........+.++..++..++++..
T Consensus 838 lr~aai~IQs~~Rg~laRr~~~~lr~~~aav~IQ~~~Rg~l~R~~y~~~~~aai~iQs~~R~~laRr~~~~Lk~ear~~~ 917 (1080)
T 2dfs_A 838 MRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVE 917 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHTTTTHHHHHHHHHHHHHHHHHHHTTTC--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 99999999999999999999987764322 11111223445556666555554221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 597 KAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSLSIAKK 653 (793)
Q Consensus 597 ~~e~~l~~~e~e~~~L~~~l~~~e~~~~ele~k~~~~ee~~qkq~~~lq~~L~a~~~ 653 (793)
.+.+....++.++.+|++++++.++++.++++++..+++.++.+.+.|+.+++..++
T Consensus 918 ~l~~~~~~LE~kl~eLq~rL~~~e~~n~~L~~~~~~~~~~~~~e~~~L~~~l~~le~ 974 (1080)
T 2dfs_A 918 RYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRM 974 (1080)
T ss_dssp ---------------------------------CHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 111123456667777777777777777767666666666555555555544444333
No 2
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=100.00 E-value=1.7e-128 Score=1153.87 Aligned_cols=508 Identities=39% Similarity=0.682 Sum_probs=446.5
Q ss_pred CCccCccccCCCccccCCcccHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhcCeeEEeeCCCCceeecCchHHHHH
Q 003820 2 SAKEYKYLRQSSCYSINGVDDAEQFRIVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNENHVEPVADEGLITV 81 (793)
Q Consensus 2 ~~~~y~yL~~~~~~~~~~~dD~~~f~~~~~Al~~lg~~~~~~~~if~ilaaILhLGNi~F~~~~~~~~~~~~~~~~l~~~ 81 (793)
+|++|+||++| +..++++||+++|+.|+.||++|||+++++..||+|||||||||||+|...++++.+.+.+.+.++.+
T Consensus 305 ~~~~y~yL~~g-~~~~~~~dD~~~f~~~~~Am~~lGfs~~e~~~i~~ilAaILhLGNi~F~~~~~~~~~~~~~~~~l~~~ 383 (837)
T 1kk8_A 305 DSGLYSFINQG-CLTVDNIDDVEEFKLCDEAFDILGFTKEEKQSMFKCTASILHMGEMKFKQRPREEQAESDGTAEAEKV 383 (837)
T ss_dssp CGGGCTTTCSS-CSCBTTBCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCCEEC----CCCEESCSHHHHHH
T ss_pred ChhhcccccCC-CcccCCcChHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHhhccceEEecCCCCccccCCHHHHHHH
Confidence 57899999997 57899999999999999999999999999999999999999999999998766677889999999999
Q ss_pred HHHhCCCHHHHHHHHccceeeecCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCcceeEEeecC
Q 003820 82 AKLIGCDIGELKLALSTRKMRVGNDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIY 161 (793)
Q Consensus 82 a~LLgv~~~~L~~~L~~~~i~~~~e~i~~~lt~~qA~~~rdaLak~LY~rLF~wlV~~IN~~l~~~~~~~~~~IgILDI~ 161 (793)
|.||||++++|.++||++++.+|+|.+++++|++||.++||||||+||++||+|||.+||.+|.. +.....+|||||||
T Consensus 384 a~LLgv~~~~L~~aL~~~~~~~~~e~v~~~~~~~qA~~~rdalaK~lY~rLF~wlV~~IN~~l~~-~~~~~~~IGvLDI~ 462 (837)
T 1kk8_A 384 AFLCGINAGDLLKALLKPKVKVGTEMVTKGQNMNQVVNSVGALAKSLYDRMFNWLVRRVNKTLDT-KAKRNYYIGVLDIA 462 (837)
T ss_dssp HHHHTSCHHHHHHHHHSCEEC----CEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCCEEEEEEECC
T ss_pred HHHHCCCHHHHHHHhcCcEEEcCCceEEeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CCCCcceEEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999984 33456799999999
Q ss_pred CCccCCCCChhHHHHHHhhHHHHHHHHHHhhHHHHHHHhhcCCcccccccC-CchhHHHhhhcCCCccccccccccCCCC
Q 003820 162 GFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFE-DNKDCLNLFEKKPLGLLSLLDEESTFPN 240 (793)
Q Consensus 162 GFE~f~~NsfEQlcINyaNEkLq~~f~~~~f~~eqeeY~~EgI~w~~i~f~-dN~~~ldLie~kp~Gil~lLDee~~~p~ 240 (793)
|||+|+.|||||||||||||+|||+||+|+|+.||+||.+|||+|++|+|. ||++|||||++ |.|||+||||||++|+
T Consensus 463 GFE~f~~NsFEQlcINyaNEkLQq~Fn~~~f~~EqeeY~~EgI~w~~i~f~~dn~~~idLiek-p~GIlslLDEec~~p~ 541 (837)
T 1kk8_A 463 GFEIFDFNSFEQLCINYTNERLQQFFNHHMFILEQEEYKKEGIAWEFIDFGMDLQMCIDLIEK-PMGILSILEEECMFPK 541 (837)
T ss_dssp CCCCCSSBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSCCCCHHHHHHHHHHHS-TTSHHHHHHHHTTCTT
T ss_pred CccccccccHHHHHHHHhhHHHHHHHHHhhhHHHHHHhhhcCCceeecccccCHHHHHHHHhc-CCcHHHHHHHHhcCCC
Confidence 999999999999999999999999999999999999999999999999994 99999999998 8999999999999999
Q ss_pred CCcHHHHHHH-HHHcCCCCccccCC--------CCCcEEEecCccccccccchhhhccccccHHHHHHHhhcCCchH-HH
Q 003820 241 GTDLTFANKL-KQHLNSNPCFRGER--------DKSFTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCSCHLP-QI 310 (793)
Q Consensus 241 ~tD~~f~~kl-~~~~~~~~~~~~~~--------~~~F~I~HyaG~V~Y~v~gfleKN~D~l~~~~~~ll~~S~~~~~-~l 310 (793)
+||.+|++|| .+++++||+|..++ ...|+|+||||+|+|++.|||+||+|+|++++++||++|+++++ .+
T Consensus 542 ~tD~tf~~kl~~~~~~~~~~f~~p~~~~~k~~~~~~F~I~HyAG~V~Y~~~gfleKNkD~l~~~~~~ll~~S~~~~v~~L 621 (837)
T 1kk8_A 542 ADDKSFQDKLYQNHMGKNRMFTKPGKPTRPNQGPAHFELHHYAGNVPYSITGWLEKNKDPINENVVALLGASKEPLVAEL 621 (837)
T ss_dssp CCHHHHHHHHHHHHTTTCSSEECCCSCSSTTCCCCSEEEEETTEEEEECCSSHHHHHSCCCCHHHHHHHHTCSSHHHHHH
T ss_pred CChHHHHHHHHHHhcCCCcCccCCCccccccccCCceEEeeccCcccccHHHHHHhccccccHHHHHHHHhchHHHHHHH
Confidence 9999999996 56789999997764 46899999999999999999999999999999999999999975 58
Q ss_pred hhhcccccCCCCccCCCccCCCCCCCCccHHHHHHHHHHHHHHHHhccCCeeeeecCCCCCCCCCccchhHHHHHhhhhC
Q 003820 311 FASNMLSQSNKPVVGPLYKAGGADSQKLSVATKFKGQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCG 390 (793)
Q Consensus 311 f~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~f~~~L~~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~g 390 (793)
|+.... .++ +..+..+.....+||+++|+.||+.||++|.+|+||||||||||+.+.|+.||..+|++||||+|
T Consensus 622 f~~~~~-~~g-----~~~~~k~~~~~~~Tv~~~fk~sL~~Lm~~L~~t~phfVRCIkPN~~k~p~~fd~~~V~~QLr~~G 695 (837)
T 1kk8_A 622 FKAPEE-PAG-----GGKKKKGKSSAFQTISAVHRESLNKLMKNLYSTHPHFVRCIIPNELKQPGLVDAELVLHQLQCNG 695 (837)
T ss_dssp TCC------------------------CCHHHHHHHHHHHHHHHHTTEEEEEEEEECCCSSCCTTCCCHHHHHHHHTTSS
T ss_pred hccccc-ccC-----CCCCCCCCCCCCCchHHHHHHHHHHHHHHHHccCCeeeeeeCCCccCCcccccchheeeeccccC
Confidence 865321 100 00011111234689999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhcCCCCccChHHHHHHhhccccccCCC--CChHHHHHHHHHHcCCCCcceeecceeeeeeeccccccccccc
Q 003820 391 VLEVVRISRSGFPTRMSHQKFARRYGFLLLESVAS--QDPLSVSVAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTRN 468 (793)
Q Consensus 391 vle~vri~r~Gyp~r~~~~eF~~RY~~L~~~~~~~--~d~~~~~~~il~~~~~~~~~~~vGkTKVFlr~~~~~~LE~~R~ 468 (793)
|||+|||+|+|||+|++|.+|+.||++|.|..++. .|+++.|+.+|..+++++++|++|+||||||.+++..||++|.
T Consensus 696 vlE~iri~r~Gfp~R~~f~eF~~RY~~L~~~~~~~~~~d~k~~~~~ll~~~~~~~~~~~~G~TKVF~r~~~~~~LE~~r~ 775 (837)
T 1kk8_A 696 VLEGIRICRKGFPSRLIYSEFKQRYSILAPNAIPQGFVDGKTVSEKILAGLQMDPAEYRLGTTKVFFKAGVLGNLEEMRD 775 (837)
T ss_dssp SCC-----CCCSCEEEEHHHHHHHHGGGSGGGCCC---CHHHHHHHHHHHHTCCGGGEEECSSEEEECTTHHHHHHHHHH
T ss_pred ccHHHHHHHHhccccccHHHHHHHHHHhcccccccCCCCHHHHHHHHHHHcCCCccceeecCEEEEehhhHHHHHHHHHH
Confidence 99999999999999999999999999999987764 4899999999999999999999999999999999999999987
Q ss_pred ccchhhHhhhhhhcccccchhhcccccchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHH
Q 003820 469 RTLHGILRVQSCFRGHQARLCLKELRRGIVALQSFIRGEKIRKEYALVLQRHRAAVVIQRQIKSRVARQKLK 540 (793)
Q Consensus 469 ~~l~aa~~IQ~~~Rg~~~R~~~~~~~~a~i~IQs~~Rg~~aRr~~~~l~~~~~AAi~IQ~~~R~~~~R~~~~ 540 (793)
..+.. .++.||++|||+++|++|.+++.++.|+++||++||+|++|+.|.
T Consensus 776 ~~l~~----------------------~~~~iQa~~Rg~l~R~~~~k~~~~r~a~~~IQ~~~R~~~~~r~~~ 825 (837)
T 1kk8_A 776 ERLSK----------------------IISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNWQ 825 (837)
T ss_dssp HHHHH----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHh----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchH
Confidence 65543 356778888888888888888777788999999999998877654
No 3
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=100.00 E-value=3.4e-126 Score=1192.08 Aligned_cols=516 Identities=34% Similarity=0.587 Sum_probs=457.6
Q ss_pred CCccCccccCCCccccCCcccHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhcCeeEEeeCCCCceeecCchHHHHH
Q 003820 2 SAKEYKYLRQSSCYSINGVDDAEQFRIVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNENHVEPVADEGLITV 81 (793)
Q Consensus 2 ~~~~y~yL~~~~~~~~~~~dD~~~f~~~~~Al~~lg~~~~~~~~if~ilaaILhLGNi~F~~~~~~~~~~~~~~~~l~~~ 81 (793)
+|++|+||++| |..++|+||+++|..|+.||++|||+++++..||+|||||||||||+|...++++.+.+.+.+.+..|
T Consensus 308 ~~~~~~yl~~~-~~~~~~~~d~~~f~~~~~a~~~lg~~~~e~~~i~~ilaaiLhlGni~f~~~~~~~~~~~~~~~~~~~~ 386 (1184)
T 1i84_S 308 GFNNYTFLSNG-HVPIPAQQDDEMFQETLEAMTIMGFTEEEQTSILRVVSSVLQLGNIVFKKERNTDQASMPDNTAAQKV 386 (1184)
T ss_dssp CTTSCSSCTTS-SCCCTTCCHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTTTCCCBCCTTTSCCBCCCSHHHHHH
T ss_pred ChHhCCccCCC-CcCCCCCChHHHHHHHHHHHHhceeCHHHHHHHHHHHHHHHhhcCceeeccCCCcCcccCChHHHHHH
Confidence 68899999997 56899999999999999999999999999999999999999999999987666677888899999999
Q ss_pred HHHhCCCHHHHHHHHccceeeecCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCcceeEEeecC
Q 003820 82 AKLIGCDIGELKLALSTRKMRVGNDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIY 161 (793)
Q Consensus 82 a~LLgv~~~~L~~~L~~~~i~~~~e~i~~~lt~~qA~~~rdaLak~LY~rLF~wlV~~IN~~l~~~~~~~~~~IgILDI~ 161 (793)
|.||||++++|.++||++++.+|++.|++++|++||.++||||||+||++||+|||.+||.+|++.......+|||||||
T Consensus 387 a~lLg~~~~~l~~~l~~~~~~~~~e~~~~~~~~~~a~~~rdalak~lY~~lF~wlv~~iN~~l~~~~~~~~~~IgvLDi~ 466 (1184)
T 1i84_S 387 CHLMGINVTDFTRSILTPRIKVGRDVVQKAQTKEQADFAIEALAKAKFERLFRWILTRVNKALDKTKRQGASFLGILDIA 466 (1184)
T ss_dssp HHHTTSCHHHHHHHHHSCCCCCTTSCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCC------CEEEEEEECC
T ss_pred HHHHCCCHHHHHHHhcCcEEEeCCceEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccCCcceEEEeecC
Confidence 99999999999999999999999999999999999999999999999999999999999999986534456899999999
Q ss_pred CCccCCCCChhHHHHHHhhHHHHHHHHHHhhHHHHHHHhhcCCcccccccC-CchhHHHhhhcC--CCccccccccccCC
Q 003820 162 GFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFE-DNKDCLNLFEKK--PLGLLSLLDEESTF 238 (793)
Q Consensus 162 GFE~f~~NsfEQlcINyaNEkLq~~f~~~~f~~eqeeY~~EgI~w~~i~f~-dN~~~ldLie~k--p~Gil~lLDee~~~ 238 (793)
|||+|+.|||||||||||||+|||+||+|||+.||+||..|||+|++|+|. ||++|||||+++ |.|||+||||||++
T Consensus 467 GFE~f~~NsfeQlciNy~nEkLq~~f~~~~f~~eq~ey~~Egi~~~~i~~~~dn~~~~~lie~~~~~~Gil~lLdee~~~ 546 (1184)
T 1i84_S 467 GFEIFEINSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGLDLQPCIELIERPTNPPGVLALLDEECWF 546 (1184)
T ss_dssp CCCCCSSBCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTCSCCCCCCCCCCHHHHHTTSCCSSSCCHHHHHHHTTSC
T ss_pred CcCCCCcchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCccccccCCCcHHHHHHHhCCCCCCCchhhhhhhhCC
Confidence 999999999999999999999999999999999999999999999999995 999999999973 34999999999999
Q ss_pred CCCCcHHHHHHHHHHcCCCCccccCC----CCCcEEEecCccccccccchhhhccccccHHHHHHHhhcCCchH-HHhhh
Q 003820 239 PNGTDLTFANKLKQHLNSNPCFRGER----DKSFTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCSCHLP-QIFAS 313 (793)
Q Consensus 239 p~~tD~~f~~kl~~~~~~~~~~~~~~----~~~F~I~HyaG~V~Y~v~gfleKN~D~l~~~~~~ll~~S~~~~~-~lf~~ 313 (793)
|++||.+|++||++.+++||+|..|+ +..|+|+||||+|+|++.|||+||+|+|+++++.||.+|+++++ .+|+.
T Consensus 547 p~~td~~~~~kl~~~~~~~~~~~~~~~~~~~~~F~i~Hyag~V~Y~~~gfl~kN~d~l~~~~~~ll~~s~~~~~~~lf~~ 626 (1184)
T 1i84_S 547 PKATDTSFVEKLIQEQGNHAKFQKSKQLKDKTEFCILHYAGKVTYNASAWLTKNMDPLNDNVTSLLNQSSDKFVADLWKD 626 (1184)
T ss_dssp TTCCHHHHHHHHHHHTSSCTTEEECSSCTTTCEEEEECSSCEEEEECTTHHHHHHCCCCHHHHHHHHTCSCHHHHHHHSC
T ss_pred CCCChHHHHHHHHHHhCCCCCccCCCCCCCCCcEEEECCCceEEeccCCchhhccCcccHHHHHHHHhCchHHHHHHhcc
Confidence 99999999999999999999998775 46899999999999999999999999999999999999999975 58865
Q ss_pred cccccCCCCccCC-----CccCCCCCCCCccHHHHHHHHHHHHHHHHhccCCeeeeecCCCCCCCCCccchhHHHHHhhh
Q 003820 314 NMLSQSNKPVVGP-----LYKAGGADSQKLSVATKFKGQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRC 388 (793)
Q Consensus 314 ~~~~~~~~~~~~~-----~~~~~~~~~~~~tv~~~f~~~L~~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~ 388 (793)
.....+.....++ +.........++||+++|+.||+.||.+|.+|+||||||||||+.+.|+.||..+|++||||
T Consensus 627 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~f~~~l~~L~~~l~~t~phfvRCIkPN~~k~p~~fd~~~V~~QLr~ 706 (1184)
T 1i84_S 627 VDRIVGLDQMAKMTESSLPSASKTKKGMFRTVGQLYKEQLTKLMTTLRNTNPNFVRCIIPNHEKRAGKLDAHLVLEQLRC 706 (1184)
T ss_dssp CTTCCCC---------------------CCCHHHHHHHHHHHHHHHHTTSEEEECCEECCCSSCCSSCCCHHHHHHHHHH
T ss_pred ccccccccccccccccccCccccccCCCCCcHHHHHHHHHHHHHHHHHhcCCCceeeeCCCCcCCCCcccHHHHHHHHhh
Confidence 4321111000000 00001112346899999999999999999999999999999999999999999999999999
Q ss_pred hChhHHHHHHhcCCCCccChHHHHHHhhccccccCCC--CChHHHHHHHHHHcCCCCcceeecceeeeeeeccccccccc
Q 003820 389 CGVLEVVRISRSGFPTRMSHQKFARRYGFLLLESVAS--QDPLSVSVAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDT 466 (793)
Q Consensus 389 ~gvle~vri~r~Gyp~r~~~~eF~~RY~~L~~~~~~~--~d~~~~~~~il~~~~~~~~~~~vGkTKVFlr~~~~~~LE~~ 466 (793)
+||||+|||+|+|||+|++|.+|+.||++|.|...+. .|++..|..||..++++++.|+||+|||||+.+++..||.+
T Consensus 707 ~GvlE~iri~r~Gfp~R~~~~~F~~ry~~L~~~~~~~~~~d~k~~~~~lL~~l~l~~~~~~iG~TKVF~r~g~l~~LE~~ 786 (1184)
T 1i84_S 707 NGVLEGIRICRQGFPNRIVFQEFRQRYEILAANAIPKGFMDGKQACILMIKALELDPNLYRIGQSKIFFRTGVLAHLEEE 786 (1184)
T ss_dssp TTHHHHHHHHHHSCCEEEEHHHHHHHTTTTCTTTSCSSCCCHHHHHHHHHHTTTCCTTTCCBCSSEEEECTTHHHHHHHH
T ss_pred cCchHHHHhHhhcCcccccHHHHHHHHHHhccccCCcCCCCHHHHHHHHHHHcCCCccceeEcCeEEEEechHHHHHHHH
Confidence 9999999999999999999999999999999887764 38899999999999999999999999999999999999998
Q ss_pred ccccchhhHhhhhhhcccccchhhcccccchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHH
Q 003820 467 RNRTLHGILRVQSCFRGHQARLCLKELRRGIVALQSFIRGEKIRKEYALVLQRHRAAVVIQRQIKSRVARQKLK 540 (793)
Q Consensus 467 R~~~l~aa~~IQ~~~Rg~~~R~~~~~~~~a~i~IQs~~Rg~~aRr~~~~l~~~~~AAi~IQ~~~R~~~~R~~~~ 540 (793)
|...+.. .++.||++|||+++|+.|.+++.++.|+++||++||+|+.|+.|.
T Consensus 787 r~~~l~~----------------------~~~~iQ~~~Rg~l~R~~~~k~~~~~~a~~~iQ~~~r~~~~~k~~~ 838 (1184)
T 1i84_S 787 RDLKITD----------------------VIIAFQAQCRGYLARKAFAKRQQQLESIFCIQYNVRSFMNVXHWP 838 (1184)
T ss_dssp HHHHTHH----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHH----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 8765443 356777778888888888777766778888888888888887654
No 4
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=100.00 E-value=2.9e-126 Score=1129.41 Aligned_cols=493 Identities=40% Similarity=0.690 Sum_probs=436.7
Q ss_pred CCccCccccCCCccccCCcccHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhcCeeEEeeCCCCceeecCchHHHHH
Q 003820 2 SAKEYKYLRQSSCYSINGVDDAEQFRIVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNENHVEPVADEGLITV 81 (793)
Q Consensus 2 ~~~~y~yL~~~~~~~~~~~dD~~~f~~~~~Al~~lg~~~~~~~~if~ilaaILhLGNi~F~~~~~~~~~~~~~~~~l~~~ 81 (793)
+|++|+||++|+|..++++||+++|+.|+.||++|||+++++..||+|||||||||||+|...+++......+++.++.+
T Consensus 281 ~~~~y~yl~~~~~~~~~~~dD~~~f~~~~~Am~~lG~s~~e~~~i~~ilaaILhLGNi~F~~~~~~~~~v~~~~~~l~~~ 360 (795)
T 1w7j_A 281 NANYFHYTKQGGSPVIDGIDDAKEMVNTRQACTLLGISDSYQMGIFRILAGILHLGNVEFASRDSDSCAIPPKHDPLTIF 360 (795)
T ss_dssp CTTTSHHHHTTSCCCCTTCCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTCCCEEEETTEEECCTTCHHHHHH
T ss_pred ChHhCccccCCCCCcCCCccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCceEeecCCcceeecCChHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999987665433333678899999
Q ss_pred HHHhCCCHHHHHHHHccceeeecCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCcceeEEeecC
Q 003820 82 AKLIGCDIGELKLALSTRKMRVGNDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIY 161 (793)
Q Consensus 82 a~LLgv~~~~L~~~L~~~~i~~~~e~i~~~lt~~qA~~~rdaLak~LY~rLF~wlV~~IN~~l~~~~~~~~~~IgILDI~ 161 (793)
|.||||++++|.++||++++.+++|.+++++|++||.++||||||+||++||+|||.+||.+|.... ....+|||||||
T Consensus 361 a~LLgv~~~~L~~aL~~~~~~~~~e~v~~~~~~~qA~~~rdalaK~lY~rLF~wlV~~IN~~l~~~~-~~~~~IGvLDI~ 439 (795)
T 1w7j_A 361 CDLMGVDYEEMAHWLCHRKLATATETYIKPISKLHAINARDALAKHIYANLFNWIVDHVNKALHSTV-KQHSFIGVLDIY 439 (795)
T ss_dssp HHHHTCCHHHHHHHHSEEEEECSSCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSS-CCSEEEEEEECC
T ss_pred HHHhCCCHHHHHHHhcccEEEeCCceecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc-cccceEEeeccC
Confidence 9999999999999999999999999999999999999999999999999999999999999998654 346799999999
Q ss_pred CCccCCCCChhHHHHHHhhHHHHHHHHHHhhHHHHHHHhhcCCcccccccCCchhHHHhhhcCCCccccccccccCCCCC
Q 003820 162 GFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEKKPLGLLSLLDEESTFPNG 241 (793)
Q Consensus 162 GFE~f~~NsfEQlcINyaNEkLq~~f~~~~f~~eqeeY~~EgI~w~~i~f~dN~~~ldLie~kp~Gil~lLDee~~~p~~ 241 (793)
|||+|+.|||||||||||||||||+||+|+|+.||+||.+|||+|++|+|.||++|||||+++ .|||+||||||++|++
T Consensus 440 GFE~f~~NsFEQlcINyaNEkLQq~Fn~~~F~~EqeeY~~EgI~w~~i~f~DN~~~idLie~~-~GIlslLDEec~~p~~ 518 (795)
T 1w7j_A 440 GFETFEINSFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIEAK-MGVLDLLDEECKMPKG 518 (795)
T ss_dssp CCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCCCCCHHHHHHHHST-TSHHHHHHHHHTSTTC
T ss_pred cccccCcCCHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcCCcccccCccccHHHHHHHHhc-CCHHHhhhhhccCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999997 9999999999999999
Q ss_pred CcHHHHHHHHHHc-CCCCccccCC--CCCcEEEecCccccccccchhhhccccccHHHHHHHhhcC-CchH-HHhhhccc
Q 003820 242 TDLTFANKLKQHL-NSNPCFRGER--DKSFTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCS-CHLP-QIFASNML 316 (793)
Q Consensus 242 tD~~f~~kl~~~~-~~~~~~~~~~--~~~F~I~HyaG~V~Y~v~gfleKN~D~l~~~~~~ll~~S~-~~~~-~lf~~~~~ 316 (793)
||.+|++||++.+ ++||+|..++ ...|+|+||||+|+|++.|||+||+|+|++++++||++|+ ++++ .+|.....
T Consensus 519 tD~~f~~kl~~~~~~~~~~f~~p~~~~~~F~I~HyAG~V~Y~~~gfleKNkD~l~~~~~~ll~~S~~~~~v~~lf~~~~~ 598 (795)
T 1w7j_A 519 SDDTWAQKLYNTHLNKCALFEKPRLSNKAFIIKHFADKVEYQCEGFLEKNKDTVYEEQIKVLKSSKKFKLLPELFQDEEK 598 (795)
T ss_dssp CHHHHHHHHHHHHTTTCTTEECCTTCSSEEEEECSSCEEEEECTTHHHHHHCCCCHHHHHHHHTCSSCSHHHHTTC----
T ss_pred ChHHHHHHHHHHhhccCCccccCCCCCCceEEEecceEEEEechhHHhhccccccHHHHHHHHhccccHHHHHHhccccc
Confidence 9999999999987 9999998876 5799999999999999999999999999999999999999 9875 57864331
Q ss_pred ccC-C--C---------CccCCCc--cCCCCCCCCccHHHHHHHHHHHHHHHHhccCCeeeeecCCCCCCCCCccchhHH
Q 003820 317 SQS-N--K---------PVVGPLY--KAGGADSQKLSVATKFKGQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLV 382 (793)
Q Consensus 317 ~~~-~--~---------~~~~~~~--~~~~~~~~~~tv~~~f~~~L~~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V 382 (793)
..+ . . ....+.+ ..++...+++||+++|+.||+.||++|.+|+||||||||||+.+.|+.||..+|
T Consensus 599 ~~~~~~~~~s~~~~~s~~~~~~~~~~~~~~~~~~~~Tv~~~fk~sL~~Lm~~L~~t~phfVRCIkPN~~k~p~~fd~~~V 678 (795)
T 1w7j_A 599 AISPTSATPSGRVPLSRTPVKPAKARPGQTSKEHKKTVGHQFRNSLHLLMETLNATTPHYVRCIKPNDFKFPFTFDEKRA 678 (795)
T ss_dssp -----------------------------------CCHHHHHHHHHHHHHHHHHTSEEEEEEEECCCTTCCTTCCCHHHH
T ss_pred cccccccccccccccccccccccccccccccCCCCCcHHHHHHHHHHHHHHHHhcCCCeEEEEeCCCCcCChhhcCcccc
Confidence 100 0 0 0000000 001223457899999999999999999999999999999999999999999999
Q ss_pred HHHhhhhChhHHHHHHhcCCCCccChHHHHHHhhccccccCCCCChHHHHHHHHHHcCCCCcceeecceeeeeeeccccc
Q 003820 383 LQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFLLLESVASQDPLSVSVAILHQFNILPEMYQVGYTKLFFRAGQIGM 462 (793)
Q Consensus 383 ~~QLr~~gvle~vri~r~Gyp~r~~~~eF~~RY~~L~~~~~~~~d~~~~~~~il~~~~~~~~~~~vGkTKVFlr~~~~~~ 462 (793)
++||||+||||+|||+|+|||+|++|.+|+.||++|+|...+..|+++.|+.||..+++++++|++|+||||||.+++..
T Consensus 679 ~~QLr~~GvlE~iri~r~Gyp~R~~f~eF~~RY~~L~~~~~~~~d~k~~~~~il~~~~~~~~~~~~G~TKVF~r~~~~~~ 758 (795)
T 1w7j_A 679 VQQLRACGVLETIRISAAGFPSRWTYQEFFSRYRVLMKQKDVLSDRKQTCKNVLEKLILDKDKYQFGKTKIFFRAGQVAY 758 (795)
T ss_dssp HHHHHHTTHHHHHHHHHHSCCEEEEHHHHHHHHGGGSCGGGCCSCHHHHHHHHHHHHCCCGGGEEECSSEEEECTTHHHH
T ss_pred cchhhhCChHHHHHHHHcCCCccccHHHHHHHHHHhCCcccCCCCHHHHHHHHHHHhCCCccceEEcCceEEEchhHHHH
Confidence 99999999999999999999999999999999999999876655999999999999999999999999999999999999
Q ss_pred ccccccccch-hhHhhhhhhcccccchhhcccccc
Q 003820 463 LEDTRNRTLH-GILRVQSCFRGHQARLCLKELRRG 496 (793)
Q Consensus 463 LE~~R~~~l~-aa~~IQ~~~Rg~~~R~~~~~~~~a 496 (793)
||++|...+. +++.||++||||++|++|++++.+
T Consensus 759 LE~~r~~~l~~~~~~iQ~~~Rg~l~R~~~~~~r~a 793 (795)
T 1w7j_A 759 LEKIRADKLRAACIRIQKTIRGWLMRKKYMRMRRG 793 (795)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999987665 445666666666666666655544
No 5
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=100.00 E-value=5.2e-124 Score=1133.26 Aligned_cols=540 Identities=30% Similarity=0.496 Sum_probs=461.6
Q ss_pred CCccCccccCC--------------------------CccccCCcccHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 003820 2 SAKEYKYLRQS--------------------------SCYSINGVDDAEQFRIVVEALDIVHVSKEDQESVFAMLAAVLW 55 (793)
Q Consensus 2 ~~~~y~yL~~~--------------------------~~~~~~~~dD~~~f~~~~~Al~~lg~~~~~~~~if~ilaaILh 55 (793)
+|++|+||++| +|..++++||+++|..|+.||++|||+++++..||+|||||||
T Consensus 267 ~~~~y~yL~qg~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~dD~~~f~~~~~Am~~lGfs~~e~~~I~~iLAaILh 346 (1052)
T 4anj_A 267 SPDNFRYLNRGCTRYFANKETDKQILQNRKSPEYLKAGSLKDPLLDDHGDFIRMCTAMKKIGLDDEEKLDLFRVVAGVLH 346 (1052)
T ss_dssp CGGGCHHHHTSCCCCBCCHHHHTTSCGGGCCHHHHHHCCBCCSSCCHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred ChHhCchhcCCCccccccccchhhhcccccchhhccCCCccCCCcchHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Confidence 58899999985 4678899999999999999999999999999999999999999
Q ss_pred hcCeeEEeeCCCC---ceeecCchHHHHHHHHhCCCHHHHHHHHccceee-----ecCceEEecCCHHHHHHHHHHHHHH
Q 003820 56 LGNVSFTVIDNEN---HVEPVADEGLITVAKLIGCDIGELKLALSTRKMR-----VGNDTIVQNLTLSQATDTRDALAKS 127 (793)
Q Consensus 56 LGNi~F~~~~~~~---~~~~~~~~~l~~~a~LLgv~~~~L~~~L~~~~i~-----~~~e~i~~~lt~~qA~~~rdaLak~ 127 (793)
||||+|.+.++.+ .+.+.+.+.++.||.||||++++|..+||++++. ++||.++++++++||.++||||||+
T Consensus 347 LGNi~F~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~aLt~r~~~~~~~~~~~e~i~~~l~~~qA~~~rDaLAK~ 426 (1052)
T 4anj_A 347 LGNIDFEEAGSTSGGCNLKNKSTQALEYCAELLGLDQDDLRVSLTTRVMLTTAGGAKGTVIKVPLKVEQANNARDALAKT 426 (1052)
T ss_dssp HHTCCEEC-------CEECGGGHHHHHHHHHHTTCCHHHHHHHHHEEC-------------CEECCHHHHHHHHHHHHHH
T ss_pred hcceeEEecCCCCCCcccccCChHHHHHHHHHhCCCHHHHHHHHhhceeeecccccCceEEEecCCHHHHHHHHHHHHHH
Confidence 9999998654322 3445667889999999999999999999998774 6899999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhccCCCCCcceeEEeecCCCccCCCCChhHHHHHHhhHHHHHHHHHHhhHHHHHHHhhcCCccc
Q 003820 128 IYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWA 207 (793)
Q Consensus 128 LY~rLF~wlV~~IN~~l~~~~~~~~~~IgILDI~GFE~f~~NsfEQlcINyaNEkLq~~f~~~~f~~eqeeY~~EgI~w~ 207 (793)
||++||+|||++||.+|... ....+||||||||||+|+.|||||||||||||+|||+||+|+|+.||+||.+|||+|+
T Consensus 427 LY~rLF~wiV~~IN~~l~~~--~~~~~IGILDI~GFE~f~~NsFEQLCINyaNEkLQq~Fn~~vF~~EqeeY~~EgI~w~ 504 (1052)
T 4anj_A 427 VYSHLFDHVVNRVNQCFPFE--TSSYFIGVLDIAGFEYFEHNSFEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVN 504 (1052)
T ss_dssp HHHHHHHHHHHHHHTTSCCS--CCSEEEEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHhhhcccccc--cccceEEEEecCCCcccccCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCcc
Confidence 99999999999999999764 3467999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCchhHHHhhhcCCCccccccccccCCCCCCcHHHHHHHHHHcCCCCccccCC------------CCCcEEEecCc
Q 003820 208 KVDFEDNKDCLNLFEKKPLGLLSLLDEESTFPNGTDLTFANKLKQHLNSNPCFRGER------------DKSFTVSHYAG 275 (793)
Q Consensus 208 ~i~f~dN~~~ldLie~kp~Gil~lLDee~~~p~~tD~~f~~kl~~~~~~~~~~~~~~------------~~~F~I~HyaG 275 (793)
+|+|.||++|||||+++|.|||+||||||++|++||.+|++||++.+++|++|..++ +..|+|+||||
T Consensus 505 ~I~f~DN~~~idLie~kp~GIl~lLDEe~~~p~~tD~~f~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~I~HyAG 584 (1052)
T 4anj_A 505 EVHYVDNQDCIDLIEARLVGILDILDEENRLPQPSDQHFTSAVHQKHKDHFRLSIPRKSKLAIHRNIRDDEGFIIRHFAG 584 (1052)
T ss_dssp CCCCCCCHHHHHHHHCTTTSHHHHHHHHHHSSSCCHHHHHHHHHHTTTTCTTEECGGGCSCSTTTTCCTTSEEEEEETTE
T ss_pred cCCcCCcHHHHHHHHcCcccHHHHHHHHhcCCCCcHHHHHHHHHHHhccCccccCCcccccccccccCCCCCeEEEcCCc
Confidence 999999999999999999999999999999999999999999999999999986542 24699999999
Q ss_pred cccccccchhhhccccccHHHHHHHhhcCCchH-HHhhhcccccCCCCccCCCccCCCCCCCCccHHHHHHHHHHHHHHH
Q 003820 276 EVIYDTTGFLEKNRDLLHLDSIELLSSCSCHLP-QIFASNMLSQSNKPVVGPLYKAGGADSQKLSVATKFKGQLFQLMQR 354 (793)
Q Consensus 276 ~V~Y~v~gfleKN~D~l~~~~~~ll~~S~~~~~-~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~f~~~L~~Lm~~ 354 (793)
+|+|+++||||||+|+|++++++||.+|+++++ .+|.......... +.+......+||+++|+.||+.||++
T Consensus 585 ~V~Y~~~gfleKNrD~l~~~~~~ll~~S~~~~i~~Lf~~~~~~~~~~-------~~~~~~~~~~Tv~~~fk~sL~~Lm~~ 657 (1052)
T 4anj_A 585 AVCYETTQFVEKNNDALHMSLESLICESRDKFIRELFESSTNNNKDT-------KQKAGKLSFISVGNKFKTQLNLLLDK 657 (1052)
T ss_dssp EEEEECTTHHHHHBCCCCHHHHHHHHTCSCHHHHHTTCC-----------------------CCBHHHHHHHHHHHHHHH
T ss_pred cEEEecCChhhhccccccHHHHHHHHhCCcHHHHHhhhccccccccc-------cCCCCCCCCccHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999965 5786433211110 01111234689999999999999999
Q ss_pred HhccCCeeeeecCCCCCCCCCccchhHHHHHhhhhChhHHHHHHhcCCCCccChHHHHHHhhccccccCCCCChHHHHHH
Q 003820 355 LESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFLLLESVASQDPLSVSVA 434 (793)
Q Consensus 355 L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~eF~~RY~~L~~~~~~~~d~~~~~~~ 434 (793)
|.+|+||||||||||+.+.|+.||..+|++||||+||||+|||+|+|||+|++|.+|+.||++|+|...+..|+++.|+.
T Consensus 658 L~~t~phfVRCIkPN~~k~p~~fd~~~V~~QLr~~GvLE~irI~r~Gyp~R~~f~eF~~RY~~L~~~~~~~~d~k~~~~~ 737 (1052)
T 4anj_A 658 LRSTGASFIRCIKPNLKMTSHHFEGAQILSQLQCSGMVSVLDLMQGGFPSRASFHELYNMYKKYMPDKLARLDPRLFCKA 737 (1052)
T ss_dssp HHTSEEEEEEEECCCSSCCSSCCCHHHHHHHHHHHTHHHHHHHTTTCCCEEEEHHHHHHHHHTTSCSSGGGSCHHHHHHH
T ss_pred HcCcCCEEEEEECCCccCCCCcCCHHHHHHHHHHhhHHHHHHHHhcCCCCcCcHHHHHHHHHHhCcccccCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999988888899999999
Q ss_pred HHHHcCCCCcceeecceeeeeeecccccccccccccchhhHhhhhhhcccccchhhcccccchhhhhhHHHHHHHHHHHH
Q 003820 435 ILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTRNRTLHGILRVQSCFRGHQARLCLKELRRGIVALQSFIRGEKIRKEYA 514 (793)
Q Consensus 435 il~~~~~~~~~~~vGkTKVFlr~~~~~~LE~~R~~~l~aa~~IQ~~~Rg~~~R~~~~~~~~a~i~IQs~~Rg~~aRr~~~ 514 (793)
||+.+++++++|++|+||||||.+++..||++|...+..++.+|..+|||++|++|++++.+++.||..+|++..|+.+.
T Consensus 738 iL~~l~l~~~~y~iG~TKVFlr~~~~~~LE~~r~~~~~~~~~~iq~~r~~l~r~~~~k~~~~a~~i~~~~r~~~~r~~~~ 817 (1052)
T 4anj_A 738 LFKALGLNEIDYKFGLTKVFFRPGKFAEFDQIMKSDPDHLAELVKRVNHWLICSRWKKVQWCSLSVIKLKNKIKYRAEAV 817 (1052)
T ss_dssp HHHHTSCCGGGEEECSSEEEECTTCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCcCcccEEecCCEEeeCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 99999999999999999999999999999999999887766555568999999999999999999999998887665442
Q ss_pred HHHh-HHHHHHHHHHHhhhHHHHHHHHhhhhHHHHHHH
Q 003820 515 LVLQ-RHRAAVVIQRQIKSRVARQKLKNIKYSSIMIQS 551 (793)
Q Consensus 515 ~l~~-~~~AAi~IQ~~~R~~~~R~~~~~~r~aai~IQs 551 (793)
-... ...++.-+++.||++..|++|...+ +...||.
T Consensus 818 ~~w~~l~~~v~pll~~~~~~~~~r~~~~~~-~~~~~~~ 854 (1052)
T 4anj_A 818 SKGEELFTGVVPILVELDGDVNGHKFSVSG-EGEGDAT 854 (1052)
T ss_dssp HHHHHTTSSCEEEEEEEEEEETTEEEEEEE-EEEEETT
T ss_pred hHHHHHHHhhhhhHHHHHHHHHhhhhhccC-Cccccch
Confidence 1110 1112333445566666666665433 3334444
No 6
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=100.00 E-value=1.1e-121 Score=1120.16 Aligned_cols=528 Identities=34% Similarity=0.555 Sum_probs=472.1
Q ss_pred CCccCccccCCCccccCCcccHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhcCeeEEeeCCCCceeecCchHHHHH
Q 003820 2 SAKEYKYLRQSSCYSINGVDDAEQFRIVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNENHVEPVADEGLITV 81 (793)
Q Consensus 2 ~~~~y~yL~~~~~~~~~~~dD~~~f~~~~~Al~~lg~~~~~~~~if~ilaaILhLGNi~F~~~~~~~~~~~~~~~~l~~~ 81 (793)
+|++|+||++|+ ..++| ||+++|..|+.||++|||+++++..||+|||||||||||+|...++++.+.+.+.+.++.+
T Consensus 278 ~~~~y~yl~~~~-~~~~~-dD~~~f~~~~~A~~~lg~~~~e~~~i~~ilaaILhlGni~F~~~~~~~~~~~~~~~~l~~~ 355 (995)
T 2ycu_A 278 PCSHYRFLTNGP-SSSPG-QERELFQETLESLRVLGFSHEEIISMLRMVSAVLQFGNIALKRERNTDQATMPDNTAAQKL 355 (995)
T ss_dssp CGGGCTTSTTCS-CSSTT-THHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHGGGCCCEECSSSCCEECSCCHHHHHH
T ss_pred ChHHcccccCCc-cccCC-cHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhccceEeecCCCcccccCChHHHHHH
Confidence 588999999985 68899 9999999999999999999999999999999999999999998776677888999999999
Q ss_pred HHHhCCCHHHHHHHHccceeeecCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCcceeEEeecC
Q 003820 82 AKLIGCDIGELKLALSTRKMRVGNDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIY 161 (793)
Q Consensus 82 a~LLgv~~~~L~~~L~~~~i~~~~e~i~~~lt~~qA~~~rdaLak~LY~rLF~wlV~~IN~~l~~~~~~~~~~IgILDI~ 161 (793)
|.||||++++|.++||++++.+|+|.|++++|++||.++||||||+||++||+|||.+||.+|.........+|||||||
T Consensus 356 a~LLgv~~~~L~~~l~~~~~~~~~e~v~~~~~~~qa~~~rdalak~lY~~LF~wlV~~iN~~l~~~~~~~~~~IgvLDI~ 435 (995)
T 2ycu_A 356 CRLLGLGVTDFSRALLTPRIKVGRDYVQKAQTKEQADFALEALAKATYERLFRWLVLRLNRALDRSPRQGASFLGILDIA 435 (995)
T ss_dssp HHHTTCCHHHHHHHHHSCEEESSSSEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSCCCSEEEEEEECC
T ss_pred HHHHCCCHHHHHHHhcCcEEEcCCceecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccceEEEeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999986443256899999999
Q ss_pred CCccCCCCChhHHHHHHhhHHHHHHHHHHhhHHHHHHHhhcCCccccccc-CCchhHHHhhhc--CCCccccccccccCC
Q 003820 162 GFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDF-EDNKDCLNLFEK--KPLGLLSLLDEESTF 238 (793)
Q Consensus 162 GFE~f~~NsfEQlcINyaNEkLq~~f~~~~f~~eqeeY~~EgI~w~~i~f-~dN~~~ldLie~--kp~Gil~lLDee~~~ 238 (793)
|||+|+.|||||||||||||+|||+||+|+|+.||+||.+|||+|++|+| .||++|||||++ +|.|||+||||||++
T Consensus 436 GFE~f~~NsfEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~~dn~~~idlie~~~~p~Gil~lLdee~~~ 515 (995)
T 2ycu_A 436 GFEIFQLNSFEQLCINYTNEKLQQLFNHTMFVLEQEEYQREGIPWTFLDFGLDLQPCIDLIERPANPPGLLALLDEECWF 515 (995)
T ss_dssp CBCCCSSBCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCCCCCCSCCCHHHHHHHHCCSSSCCHHHHHHHSSSS
T ss_pred cccccccchHHHHHHHhhHHHHHHHHHHhhhHHHHHHHhccCCCccccccccChHHHHHHHhccCCCCchhhhhHHHhcC
Confidence 99999999999999999999999999999999999999999999999999 599999999998 489999999999999
Q ss_pred CCCCcHHHHHHHHHHcCCCCccccCC----CCCcEEEecCccccccccchhhhccccccHHHHHHHhhcCCchH-HHhhh
Q 003820 239 PNGTDLTFANKLKQHLNSNPCFRGER----DKSFTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCSCHLP-QIFAS 313 (793)
Q Consensus 239 p~~tD~~f~~kl~~~~~~~~~~~~~~----~~~F~I~HyaG~V~Y~v~gfleKN~D~l~~~~~~ll~~S~~~~~-~lf~~ 313 (793)
|++||.+|++||...+++||+|..++ +..|+|+||||+|+|++.|||+||+|+|++++++||++|+++++ .+|+.
T Consensus 516 p~~tD~~f~~kl~~~~~~~~~f~~~~~~~~~~~F~i~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~~~~v~~lf~~ 595 (995)
T 2ycu_A 516 PKATDKSFVEKVAQEQGGHPKFQRPRHLRDQADFSVLHYAGKVDYKANEWLMKNMDPLNDNVAALLHQSTDRLTAEIWKD 595 (995)
T ss_dssp TTCCHHHHHHHHHHHHTTSTTEECCCTTTCCSSEEEEETTEEEEECCTTHHHHHHCCCCHHHHHHHHTCSSHHHHHHTSS
T ss_pred CCCchHHHHHHHHHhcCCCCCcccCCccCCCCeeEEECCCCCccccccchhhhccccccHHHHHHHHhCcHHHHHHHhhc
Confidence 99999999999999889999998775 46999999999999999999999999999999999999999975 58865
Q ss_pred cccccCCCCccC--CCc-cCCCCCCCCccHHHHHHHHHHHHHHHHhccCCeeeeecCCCCCCCCCccchhHHHHHhhhhC
Q 003820 314 NMLSQSNKPVVG--PLY-KAGGADSQKLSVATKFKGQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCG 390 (793)
Q Consensus 314 ~~~~~~~~~~~~--~~~-~~~~~~~~~~tv~~~f~~~L~~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~g 390 (793)
.....+.....+ +.. ..+.....++||+++|+.||+.||++|.+|+||||||||||+.+.|+.||..+|++||||+|
T Consensus 596 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~tv~~~fk~sL~~Lm~~L~~t~phfVRCIkPN~~k~p~~fd~~~V~~QLr~~G 675 (995)
T 2ycu_A 596 VEGIVGLEQVSSLGDGPPGGRPRRGMFRTVGQLYKESLSRLMATLSNTNPSFVRCIVPNHEKRAGKLEPRLVLDQLRCNG 675 (995)
T ss_dssp CCSSCSCCC-------------CCCSSCCHHHHHHHHHHHHHHHHHTSEEEEEEEECCCSSCCTTCCCTTTHHHHHHHHT
T ss_pred ccccccccccccccccccccCcCCCCCCchHHHHHHHHHHHHHHHHhcCcceeeeecCCccccccccCHHHHHHHhcccc
Confidence 331111000000 000 00111235689999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhcCCCCccChHHHHHHhhccccccCCC--CChHHHHHHHHHHcCCCCcceeecceeeeeeeccccccccccc
Q 003820 391 VLEVVRISRSGFPTRMSHQKFARRYGFLLLESVAS--QDPLSVSVAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTRN 468 (793)
Q Consensus 391 vle~vri~r~Gyp~r~~~~eF~~RY~~L~~~~~~~--~d~~~~~~~il~~~~~~~~~~~vGkTKVFlr~~~~~~LE~~R~ 468 (793)
|||+|||+|+|||+|++|.+|+.||++|.|..++. .|+++.|+.||..+++++++|++|+||||||.+++..||++|.
T Consensus 676 vlE~iri~r~Gfp~r~~~~~F~~RY~~L~~~~~~~~~~d~~~~~~~ll~~~~~~~~~~~~G~tkVF~r~~~~~~LE~~R~ 755 (995)
T 2ycu_A 676 VLEGIRICRQGFPNRILFQEFRQRYEILTPNAIPKGFMDGKQACEKMIQALELDPNLYRVGQSKIFFRAGVLAQLEEERA 755 (995)
T ss_dssp HHHHHHHHHHSCCEEEEHHHHHHHHGGGSTTTSCSCCCCSCCSCCCSCCCSSEEESSEEEESSCTTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhcCCccccHHHHHHHHHHhCcccccccCCCHHHHHHHHHHHcCCChhheeecceEEEEecchhhhHHHHHH
Confidence 99999999999999999999999999999987764 3888899999999999999999999999999999999999998
Q ss_pred ccchh------hHhhhhhhcccccchhhcccccchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhhh
Q 003820 469 RTLHG------ILRVQSCFRGHQARLCLKELRRGIVALQSFIRGEKIRKEYALVLQRHRAAVVIQRQIKS 532 (793)
Q Consensus 469 ~~l~a------a~~IQ~~~Rg~~~R~~~~~~~~a~i~IQs~~Rg~~aRr~~~~l~~~~~AAi~IQ~~~R~ 532 (793)
..+.. +..++.|+|+..++..+++.+.+++.||++||++..++...+... ......||..++.
T Consensus 756 ~~l~~~eYe~~a~~Ll~WIr~k~a~l~~r~~~~sl~~IQ~~ir~f~~fr~~ekpp~-~~ek~rLeal~~~ 824 (995)
T 2ycu_A 756 SEQTKSDYLKRANELVQWINDKQASLESRDFGDSIESVQSFMNAHKEYKKTEKPPK-GQEVSELEAIYNS 824 (995)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTTCCCSCHHHHHHHHHHHHHHHHHTTHHHHTHHHH-HHHHHHHCSSSCC
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccch-HHHHHHHHHHHHH
Confidence 88753 345788999999999999999999999999999988877654331 1234566766663
No 7
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=100.00 E-value=1.5e-120 Score=1108.24 Aligned_cols=500 Identities=38% Similarity=0.660 Sum_probs=449.4
Q ss_pred CCccCccccCCCccccCCcccHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhcCeeEEeeCCCCceeecCchHHHHH
Q 003820 2 SAKEYKYLRQSSCYSINGVDDAEQFRIVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNENHVEPVADEGLITV 81 (793)
Q Consensus 2 ~~~~y~yL~~~~~~~~~~~dD~~~f~~~~~Al~~lg~~~~~~~~if~ilaaILhLGNi~F~~~~~~~~~~~~~~~~l~~~ 81 (793)
+|++|+||++|+|+.++|+||+++|..|+.||++|||+++++..||+|||||||||||+|...++ +.+.+.+.+.++.+
T Consensus 300 ~~~~y~yl~~~~~~~~~~~dD~~~f~~~~~A~~~lg~~~~e~~~i~~ilaaILhLGni~F~~~~~-~~~~~~~~~~l~~~ 378 (1010)
T 1g8x_A 300 GPESFNYLNQSGCVDIKGVSDEDEFKITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKGAG-EGAVLKDKTALNAA 378 (1010)
T ss_dssp CGGGCGGGSSSSCCCCBTCCHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTCCCBCCTT-SSCBCSCCHHHHHH
T ss_pred ChHhcchhcCCCccccCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhccceEEecCC-CccccCChHHHHHH
Confidence 58899999999999999999999999999999999999999999999999999999999987655 67788899999999
Q ss_pred HHHhCCCHHHHHHHHccceeeecCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCcceeEEeecC
Q 003820 82 AKLIGCDIGELKLALSTRKMRVGNDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIY 161 (793)
Q Consensus 82 a~LLgv~~~~L~~~L~~~~i~~~~e~i~~~lt~~qA~~~rdaLak~LY~rLF~wlV~~IN~~l~~~~~~~~~~IgILDI~ 161 (793)
|.||||++++|.++||++++.+|+|.|++++|++||.++||||||+||++||+|||.+||.+|.... ...+|||||||
T Consensus 379 a~LLgv~~~~L~~~l~~~~~~~~~e~v~~~~~~~qa~~~rdalak~lY~~LF~wlV~~IN~~l~~~~--~~~~IgvLDI~ 456 (1010)
T 1g8x_A 379 STVFGVNPSVLEKALMEPRILAGRDLVAQHLNVEKSSSSRDALVKALYGRLFLWLVKKINNVLCSER--KAYFIGVLDIS 456 (1010)
T ss_dssp HHHHTSCHHHHHHHHHSCEEESSSSEEECCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSS--CSEEEEEEECC
T ss_pred HHHHCCCHHHHHHHHhCcEEEeCCeeEEeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--cCceeeeccCc
Confidence 9999999999999999999999999999999999999999999999999999999999999998643 56799999999
Q ss_pred CCccCCCCChhHHHHHHhhHHHHHHHHHHhhHHHHHHHhhcCCcccccccC-CchhHHHhhhc-CCCccccccccccCCC
Q 003820 162 GFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFE-DNKDCLNLFEK-KPLGLLSLLDEESTFP 239 (793)
Q Consensus 162 GFE~f~~NsfEQlcINyaNEkLq~~f~~~~f~~eqeeY~~EgI~w~~i~f~-dN~~~ldLie~-kp~Gil~lLDee~~~p 239 (793)
|||+|+.|||||||||||||+|||+||+|+|+.||+||.+|||+|++|+|. ||++|||||++ +|.|||+||||||++|
T Consensus 457 GFE~f~~NsfEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~~dn~~~idlie~~~~~Gil~lLdee~~~p 536 (1010)
T 1g8x_A 457 GFEIFKVNSFEQLCINYTNEKLQQFFNHHMFKVEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPGILALLDEQSVFP 536 (1010)
T ss_dssp CCCCCSSBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCCCCCSHHHHHHHHCTTTTCHHHHHHHHTTSS
T ss_pred ccccCCcCcHHHHHHHhhhHHHHHHHHHHhhHHHHHHhhccCCCccccccccChHHHHHHHhcCCCCeeehhhhHHhCCC
Confidence 999999999999999999999999999999999999999999999999995 99999999998 5999999999999999
Q ss_pred CCCcHHHHHHHHHHcC-CCCccccCCC--CCcEEEecCccccccccchhhhccccccHHHHHHHhhcCCchH-HHhhhcc
Q 003820 240 NGTDLTFANKLKQHLN-SNPCFRGERD--KSFTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCSCHLP-QIFASNM 315 (793)
Q Consensus 240 ~~tD~~f~~kl~~~~~-~~~~~~~~~~--~~F~I~HyaG~V~Y~v~gfleKN~D~l~~~~~~ll~~S~~~~~-~lf~~~~ 315 (793)
++||.+|++||.++++ +||+|..|+. ..|+|+||||+|+|++.|||+||+|+|++++++||.+|+++++ .+|+...
T Consensus 537 ~~td~~f~~kl~~~~~~~~~~f~~~~~~~~~F~i~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~~~~~~~lf~~~~ 616 (1010)
T 1g8x_A 537 NATDNTLITKLHSHFSKKNAKYEEPRFSKTEFGVTHYAGQVMYEIQDWLEKNKDPLQQDLELCFKDSSDNVVTKLFNDPN 616 (1010)
T ss_dssp SCCHHHHHHHHHHHHTTTCTTEECCTTCSSEEEEEETTEEEEEECTTHHHHHHCCCCHHHHHHHTTCSCHHHHHHHHCHH
T ss_pred CCChHHHHHHHHHHhcCCCCCcccCCCCCCCEEEeeeceEEEEeecCccccccccccHHHHHHHHhCcHHHHHHHhcccc
Confidence 9999999999999999 9999987753 6999999999999999999999999999999999999999965 6886532
Q ss_pred cccCCCCccCCCccCCCCCCCCccHHHHHHHHHHHHHHHHhccCCeeeeecCCCCCCCCCccchhHHHHHhhhhChhHHH
Q 003820 316 LSQSNKPVVGPLYKAGGADSQKLSVATKFKGQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVV 395 (793)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~tv~~~f~~~L~~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~v 395 (793)
. +++ ++....++||+++|+.||+.||++|.+|+||||||||||+.+.|+.||..+|++||||+||||+|
T Consensus 617 ~--~~~---------~~k~~~~~tv~~~fk~sL~~Lm~~L~~t~phfVRCIkPN~~k~p~~fd~~~V~~QLr~~GvlE~i 685 (1010)
T 1g8x_A 617 I--ASR---------AKKGANFITVAAQYKEQLASLMATLETTNPHFVRCIIPNNKQLPAKLEDKVVLDQLRCNGVLEGI 685 (1010)
T ss_dssp H--HSC---------CCCSSSCCCHHHHHHHHHHHHHHHHTTSEEEEEEEECSCSSCCTTCCCHHHHHHHHHHSSHHHHH
T ss_pred c--ccC---------CCCCCCCCchHHHHHHHHHHHHHHHHhcCCeeeeeecCCcccccCCcChhhcchhcccCccHHHH
Confidence 0 000 01122468999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCccChHHHHHHhhccccccCCC--CChHHHHHHHHHHcCCCCcceeecceeeeeeecccccccccccccchh
Q 003820 396 RISRSGFPTRMSHQKFARRYGFLLLESVAS--QDPLSVSVAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTRNRTLHG 473 (793)
Q Consensus 396 ri~r~Gyp~r~~~~eF~~RY~~L~~~~~~~--~d~~~~~~~il~~~~~~~~~~~vGkTKVFlr~~~~~~LE~~R~~~l~a 473 (793)
||+|+|||+|++|.+|+.||++|.|. ++. .|+++.|+.+|..+++++++|++|+||||||.+++..||++|...+..
T Consensus 686 ri~r~Gfp~r~~~~~F~~RY~~L~~~-~~~~~~d~~~~~~~ll~~~~~~~~~~~~G~tkVF~r~~~l~~LE~~R~~~l~~ 764 (1010)
T 1g8x_A 686 RITRKGFPNRIIYADFVKRYYLLAPN-VPRDAEDSQKATDAVLKHLNIDPEQYRFGITKIFFRAGQLARIEEAREQRLGS 764 (1010)
T ss_dssp HHHTTSCCEEEEHHHHHHHHGGGSTT-CCTTCSCHHHHHHHHHHHTTCCGGGEEECSSEEEECTTHHHHHHHHHHHHHHH
T ss_pred HHHHhCCcccccHHHHHHHHHHhCCC-CCcCCCCHHHHHHHHHHHcCCCccceeehhhhhhhcccchhHHHHHHHHHHHH
Confidence 99999999999999999999999987 553 489999999999999999999999999999999999999999998865
Q ss_pred hH-hhhhhhcccccchhhcccccchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhH
Q 003820 474 IL-RVQSCFRGHQARLCLKELRRGIVALQSFIRGEKIRKEYALVLQRHRAAVVIQRQIKSR 533 (793)
Q Consensus 474 a~-~IQ~~~Rg~~~R~~~~~~~~a~i~IQs~~Rg~~aRr~~~~l~~~~~AAi~IQ~~~R~~ 533 (793)
++ .||-..+ +..++.|+|+..++..... ...+...||+.++.+
T Consensus 765 ~~~~iQY~~~--------------a~~L~~WIr~kqa~l~~r~---~~~sl~~IQ~ll~~f 808 (1010)
T 1g8x_A 765 EQTKSDYLKR--------------ANELVQWINDKQASLESRD---FGDSIESVQSFMNAH 808 (1010)
T ss_dssp HHHHHHHHHH--------------HHHHHHHHHHHHHHHHCCC---CCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHH--------------HHHHHHHHHHHHHHHHhhh---ccccHHHHHHHHHHH
Confidence 54 4553222 2335556666665433211 113566677766644
No 8
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=100.00 E-value=1.4e-121 Score=1075.99 Aligned_cols=455 Identities=36% Similarity=0.633 Sum_probs=408.7
Q ss_pred CCccCccccCCCccccCCcccHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhcCeeEEee----CCCCceeecCchH
Q 003820 2 SAKEYKYLRQSSCYSINGVDDAEQFRIVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVI----DNENHVEPVADEG 77 (793)
Q Consensus 2 ~~~~y~yL~~~~~~~~~~~dD~~~f~~~~~Al~~lg~~~~~~~~if~ilaaILhLGNi~F~~~----~~~~~~~~~~~~~ 77 (793)
+|++|+||++|+|+.++++||+++|+.|+.||++|||+++++..||+|||||||||||+|... ++.+.+.+.+.+.
T Consensus 222 ~~~~y~yL~~~~~~~~~~~dD~~~f~~~~~Am~~lG~~~~e~~~i~~ilaaILhLGNi~F~~~~~~~~~~~~~~v~~~~~ 301 (697)
T 1lkx_A 222 NAPAYEYLKKSGCFDVSTIDDSGEFKIIVKAMETLGLKESDQNSIWRILAAILHIGNITFAEAAEQRTGTTTVKVSDTKS 301 (697)
T ss_dssp CGGGSHHHHHTTCCCCTTCCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCCEEEETTC----CEEEESSHHH
T ss_pred ChhhCccccCCCCcccCCCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccceEeecccccCCCCcceeCCHHH
Confidence 688999999999999999999999999999999999999999999999999999999999872 2225788999999
Q ss_pred HHHHHHHhCCCHHHHHHHHccceeeec----CceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCcc
Q 003820 78 LITVAKLIGCDIGELKLALSTRKMRVG----NDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGR 153 (793)
Q Consensus 78 l~~~a~LLgv~~~~L~~~L~~~~i~~~----~e~i~~~lt~~qA~~~rdaLak~LY~rLF~wlV~~IN~~l~~~~~~~~~ 153 (793)
++.+|.||||++++|.++||++++.++ +|.+++++|++||.++||||||+||++||+|||.+||.+|.+.. ....
T Consensus 302 l~~~a~LLgv~~~~L~~~L~~r~~~~~~g~~~e~i~~~l~~~qA~~~rdalaK~lY~rLF~wlV~~IN~~l~~~~-~~~~ 380 (697)
T 1lkx_A 302 LAAAASCLKTDQQSLSIALCYRSISTGVGKRCSVISVPMDCNQAAYSRDALAKALYERLFNWLVSKINTIINCTT-EKGP 380 (697)
T ss_dssp HHHHHHHHTSCHHHHHHHHHBCC----------CCCCBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCS-CCCC
T ss_pred HHHHHHhhCCCHHHHHHHHhccEEeeccCCCCCeEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC-CCce
Confidence 999999999999999999999999999 99999999999999999999999999999999999999998643 3467
Q ss_pred eeEEeecCCCccCCCCChhHHHHHHhhHHHHHHHHHHhhHHHHHHHhhcCCcccccccCCchhHHHhhhcCCCccccccc
Q 003820 154 SISILDIYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEKKPLGLLSLLD 233 (793)
Q Consensus 154 ~IgILDI~GFE~f~~NsfEQlcINyaNEkLq~~f~~~~f~~eqeeY~~EgI~w~~i~f~dN~~~ldLie~kp~Gil~lLD 233 (793)
+||||||||||+|+.|||||||||||||||||+||+|+|+.||+||.+|||+|++|+|.||++|||||+++|.|||+|||
T Consensus 381 ~IGvLDI~GFE~f~~NsFEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~dN~~~idLie~kp~GilslLD 460 (697)
T 1lkx_A 381 VIGILDIYGFEVFQNNSFEQLNINFCNEKLQQLFIELTLKSEQEEYVREGIEWKNIEYFNNKPICELIEKKPIGLISLLD 460 (697)
T ss_dssp EEEEEECCCCCCCSSBCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCCCCCCSCCCHHHHHTTSSSSSHHHHHH
T ss_pred eEEeeccccccccCcCCHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCcccccCCCCCHHHHHHHhcccCChhhhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCcHHHHHHHHHHcCCCCccccCC--------CCCcEEEecCccccccccchhhhccccccHHHHHHHhhcCC
Q 003820 234 EESTFPNGTDLTFANKLKQHLNSNPCFRGER--------DKSFTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCSC 305 (793)
Q Consensus 234 ee~~~p~~tD~~f~~kl~~~~~~~~~~~~~~--------~~~F~I~HyaG~V~Y~v~gfleKN~D~l~~~~~~ll~~S~~ 305 (793)
|||++|++||.+|++||++++++||+|..++ ...|+|+||||+|+|++.||++||+|+|++++++||++|++
T Consensus 461 Eec~~p~~tD~~f~~kl~~~~~~~~~f~~~~~~~~k~~~~~~F~I~HyAG~V~Y~~~gfleKNkD~l~~~~~~ll~~S~~ 540 (697)
T 1lkx_A 461 EACLIAKSTDQTFLDSICKQFEKNPHLQSYVVSKDRSIGDTCFRLKHYAGDVTYDVRGFLDKNKDTLFGDLISSMQSSSD 540 (697)
T ss_dssp HHHHSTTCCHHHHHHHHHHHSSSSTTEECTTTSCCTTSCTTEEEEEETTEEEEEECTTHHHHHHCCCCHHHHHHHHTCCS
T ss_pred HhhCCCCCChHHHHHHHHHHhcCCCccccCCCCCCCccccCceeeeeeeeEEEEccCChhhhhcccccHHHHHHHhccch
Confidence 9999999999999999999999999997642 46899999999999999999999999999999999999999
Q ss_pred chH-HHhhhcccccCCCCccCCCccCCCCCCCCccHHHHHHHHHHHHHHHHhccCCeeeeecCCCCCCCCCccchhHHHH
Q 003820 306 HLP-QIFASNMLSQSNKPVVGPLYKAGGADSQKLSVATKFKGQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQ 384 (793)
Q Consensus 306 ~~~-~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~f~~~L~~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~ 384 (793)
+++ .+|+..... +...+.+||+++|+.||+.||++|.+|+||||||||||+.+.|+.||..+|++
T Consensus 541 ~~l~~lf~~~~~~--------------~~~~r~~Tv~~~fk~sL~~Lm~~L~~t~phfVRCIkPN~~k~p~~fd~~~V~~ 606 (697)
T 1lkx_A 541 PLVQGLFPPTRPE--------------DSKKRPETAGSQFRNAMNALITTLLACSPHYVRCIKSNDNKQAGVIDEDRVRH 606 (697)
T ss_dssp HHHHHHCC-------------------------CCHHHHHHHHHHHHHHHHTTSEEEEEEEECCCTTCCTTCCCHHHHHH
T ss_pred HHHHHhccccccc--------------cccCCCCcHHHHHHHHHHHHHHHHHccCCcceEeecCCCcCCCCCcChhhccc
Confidence 965 578643210 01123589999999999999999999999999999999999999999999999
Q ss_pred HhhhhChhHHHHHHhcCCCCccChHHHHHHhhccccccCCC--CChHHHHHHHHHHcCCCCcceeecceeeeeeec-ccc
Q 003820 385 QLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFLLLESVAS--QDPLSVSVAILHQFNILPEMYQVGYTKLFFRAG-QIG 461 (793)
Q Consensus 385 QLr~~gvle~vri~r~Gyp~r~~~~eF~~RY~~L~~~~~~~--~d~~~~~~~il~~~~~~~~~~~vGkTKVFlr~~-~~~ 461 (793)
||||+||||+|||+|+|||+|++|.+|+.||++|.|..++. .|+++.|+.||..+++++++|++|+||||||.+ .+.
T Consensus 607 QLr~~GvlE~iri~r~Gyp~R~~~~eF~~RY~~L~~~~~~~~~~~~k~~~~~ll~~~~~~~~~~~~G~TKVF~r~~~~l~ 686 (697)
T 1lkx_A 607 QVRYLGLLENVRVRRAGFAGRIEYTRFYNRYKMLCKKTWPSFNGTAKQATELILQQHNIDKEEIRMGKTKVFIRNPTTLF 686 (697)
T ss_dssp HHHHHTSHHHHHHHHHSCSBCCBSHHHHTTSCSSSCC---------CHHHHHHHHTTCCCGGGEEECSSBEEESSSHHHH
T ss_pred cCcccccHHHHHHHhcCCCccccHHHHHHHHHHhCcccccccCCCHHHHHHHHHHHcCCCcCcEEeCCeeEEEeCCchHH
Confidence 99999999999999999999999999999999999987664 478899999999999999999999999999996 789
Q ss_pred cccccccccc
Q 003820 462 MLEDTRNRTL 471 (793)
Q Consensus 462 ~LE~~R~~~l 471 (793)
.||++|.+.+
T Consensus 687 ~LE~~R~~~l 696 (697)
T 1lkx_A 687 YFEEKRELEM 696 (697)
T ss_dssp HHHTCC----
T ss_pred HHHHHHHhhC
Confidence 9999998754
No 9
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=100.00 E-value=4.1e-121 Score=1080.43 Aligned_cols=464 Identities=37% Similarity=0.664 Sum_probs=393.4
Q ss_pred CCccCccccCCCccccCCcccHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhcCeeEEeeCCCCceeecCchHHHHH
Q 003820 2 SAKEYKYLRQSSCYSINGVDDAEQFRIVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNENHVEPVADEGLITV 81 (793)
Q Consensus 2 ~~~~y~yL~~~~~~~~~~~dD~~~f~~~~~Al~~lg~~~~~~~~if~ilaaILhLGNi~F~~~~~~~~~~~~~~~~l~~~ 81 (793)
+|++|+||++| +..++++||+++|+.|+.||++|||+++++..||+|||||||||||+|...++++.+.+.+.+.++.+
T Consensus 306 ~~~~y~yl~~g-~~~~~~~dD~~~f~~~~~Am~~lGfs~~e~~~i~~ilaaILhLGNi~F~~~~~~~~~~~~~~~~l~~~ 384 (783)
T 4db1_A 306 NPYDYAFISQG-ETTVASIDDAEELMATDNAFDVLGFTSEEKNSMYKLTGAIMHFGNMKFKLKQREEQAEPDGTEEADKS 384 (783)
T ss_dssp CGGGCGGGCSS-CCCCTTCCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCCEEECTTSSCEEESCCHHHHHH
T ss_pred CHHHCccccCC-CcccCCCCcHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhccceeeccCCCcccccCChHHHHHH
Confidence 58899999996 57899999999999999999999999999999999999999999999998777778889999999999
Q ss_pred HHHhCCCHHHHHHHHccceeeecCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCcceeEEeecC
Q 003820 82 AKLIGCDIGELKLALSTRKMRVGNDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIY 161 (793)
Q Consensus 82 a~LLgv~~~~L~~~L~~~~i~~~~e~i~~~lt~~qA~~~rdaLak~LY~rLF~wlV~~IN~~l~~~~~~~~~~IgILDI~ 161 (793)
|.||||++++|.++||++++++|+|.+++++|++||.++||||||+||++||+|||.+||.+|... .....+|||||||
T Consensus 385 a~LLgv~~~~L~~aL~~~~i~~~~e~v~~~~~~~qA~~~rdalAK~lY~rLF~wlV~~IN~~l~~~-~~~~~~IGvLDI~ 463 (783)
T 4db1_A 385 AYLMGLNSADLLKGLCHPRVKVGNEYVTKGQNVQQVIYATGALAKAVYERMFNWMVTRINATLETK-QPRQYFIGVLDIA 463 (783)
T ss_dssp HHHTTCCHHHHHHHHHSCC------CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCS-CCCSEEEEEEECC
T ss_pred HHHhCCCHHHHHHhhcceEEEeCCeeEeeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCCceEEEeccc
Confidence 999999999999999999999999999999999999999999999999999999999999999864 3346799999999
Q ss_pred CCccCCCCChhHHHHHHhhHHHHHHHHHHhhHHHHHHHhhcCCcccccccC-CchhHHHhhhcCCCccccccccccCCCC
Q 003820 162 GFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFE-DNKDCLNLFEKKPLGLLSLLDEESTFPN 240 (793)
Q Consensus 162 GFE~f~~NsfEQlcINyaNEkLq~~f~~~~f~~eqeeY~~EgI~w~~i~f~-dN~~~ldLie~kp~Gil~lLDee~~~p~ 240 (793)
|||+|+.|||||||||||||||||+||+|+|+.||+||.+|||+|+.|+|. ||++|||||++ |.|||+||||||++|+
T Consensus 464 GFE~f~~NsFEQlCINyaNEkLQq~Fn~~~F~~EqeeY~~EgI~w~~i~f~~Dn~~~idLiek-p~Gil~lLDEec~~p~ 542 (783)
T 4db1_A 464 GFEIFDFNSFEQLCINFTNEKLQQFFNHHMFVLEQEEYKKEGIEWTFIDFGMDLQACIDLIEK-PMGIMSILEEECMFPK 542 (783)
T ss_dssp CCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCGGGGGHHHHHHHHS-TTSHHHHHCC-TTCTT
T ss_pred cccccccCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCcccccccCChHHHHHHHhC-CCchHhhhhHHhcCCC
Confidence 999999999999999999999999999999999999999999999999995 99999999997 8999999999999999
Q ss_pred CCcHHHHHHHHHHc-CCCCccccCC------CCCcEEEecCccccccccchhhhccccccHHHHHHHhhcCCchH-HHhh
Q 003820 241 GTDLTFANKLKQHL-NSNPCFRGER------DKSFTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCSCHLP-QIFA 312 (793)
Q Consensus 241 ~tD~~f~~kl~~~~-~~~~~~~~~~------~~~F~I~HyaG~V~Y~v~gfleKN~D~l~~~~~~ll~~S~~~~~-~lf~ 312 (793)
+||.+|++||++.+ ++||+|..++ ...|+|+||||+|+|++.|||+||+|+|++++++||++|+++++ .+|.
T Consensus 543 ~tD~tf~~kl~~~~~~~~~~f~~~~~~k~~~~~~F~I~HyAG~V~Y~~~gfleKNkD~l~~~~~~ll~~S~~~~v~~lf~ 622 (783)
T 4db1_A 543 ATDMTFKAKLFDNHLGKSANFQKPRNIKGKPEAHFSLIHYAGIVDYNIIGWLQKNKDPLNETVVGLYQKSSLKLLSTLFA 622 (783)
T ss_dssp CCHHHHHHHHHHHHTTTCTTEECCCC----C-CCEEEEETTEEEEECCTTHHHHHHCCCCHHHHHHHHTCSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCCCccCCCCCCCCCCCCeEEeCcCCceEEeCcChhhhccccccHHHHHHHHHCccHHHHHHhh
Confidence 99999999998765 8999997664 35899999999999999999999999999999999999999965 6887
Q ss_pred hcccccCCCCccCCCccCCCCCCCCccHHHHHHHHHHHHHHHHhccCCeeeeecCCCCCCCCCccchhHHHHHhhhhChh
Q 003820 313 SNMLSQSNKPVVGPLYKAGGADSQKLSVATKFKGQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVL 392 (793)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~f~~~L~~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvl 392 (793)
......+ +. ++....+......+||+++|+.||+.||++|.+|+||||||||||+.+.|+.||..+|++||||+|||
T Consensus 623 ~~~~~~~--~~-~~~~~~~~~~~~~~Tv~~~fk~sL~~Lm~~L~~t~phfVRCIkPN~~k~p~~fd~~~V~~QLr~~Gvl 699 (783)
T 4db1_A 623 NYAGADA--PI-EKGKGKAKKGSSFQTVSALHRENLNKLMTNLRSTHPHFVRCIIPNETKSPGVMDNPLVMHQLRCNGVL 699 (783)
T ss_dssp SCC---------------------CCCHHHHHHHHHHHHHHHHHTSEEEEEEEECCCSSCCTTCCCHHHHHHHHHHSSHH
T ss_pred ccccccc--cc-cCccCCCCcCCCCccHHHHHHHHHHHHHHHHHccCCEEEEeeCCCcccCCCcccchhhheeccccChH
Confidence 6432211 00 00000001122458999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCccChHHHHHHhhccccccCCCC---ChHHHHHHHHHHcCCCCcceeecceeeeeeecccccccccccc
Q 003820 393 EVVRISRSGFPTRMSHQKFARRYGFLLLESVASQ---DPLSVSVAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTRNR 469 (793)
Q Consensus 393 e~vri~r~Gyp~r~~~~eF~~RY~~L~~~~~~~~---d~~~~~~~il~~~~~~~~~~~vGkTKVFlr~~~~~~LE~~R~~ 469 (793)
|+|||+|+|||+|++|.+|+.||++|.|..++.+ |+++.|+.||..++++++.|++|+||||||.+++..||++|.+
T Consensus 700 E~iri~r~Gyp~R~~f~eF~~RY~~L~~~~~~~~~~~d~k~~~~~ll~~~~~~~~~~~~G~TKVFlr~g~~~~LE~~R~~ 779 (783)
T 4db1_A 700 EGIRICRKGFPNRILYGDFRQRYRILNPAAIPEGQFIDSRKGAEKLLSSLDIDHNQYKFGHTKVFFKAGLLGLLEEMRDE 779 (783)
T ss_dssp HHHHHHHTSCCEEEEC--------------------------CCHHHHSSSSCGGGEEECSSEEEECTTHHHHHHHHC--
T ss_pred hheeehhcCCCccCcHHHHHHHHHHhCccccCCCCCCCHHHHHHHHHHhCCCCcCeEEECCEEEEECcCHHHHHHHHHHH
Confidence 9999999999999999999999999999877643 7899999999999999999999999999999999999999987
Q ss_pred cc
Q 003820 470 TL 471 (793)
Q Consensus 470 ~l 471 (793)
.+
T Consensus 780 ~l 781 (783)
T 4db1_A 780 RL 781 (783)
T ss_dssp --
T ss_pred Hh
Confidence 65
No 10
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=100.00 E-value=4e-120 Score=1077.11 Aligned_cols=475 Identities=32% Similarity=0.559 Sum_probs=419.8
Q ss_pred CCccCccccCCCc--------------------------cccCCcccHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 003820 2 SAKEYKYLRQSSC--------------------------YSINGVDDAEQFRIVVEALDIVHVSKEDQESVFAMLAAVLW 55 (793)
Q Consensus 2 ~~~~y~yL~~~~~--------------------------~~~~~~dD~~~f~~~~~Al~~lg~~~~~~~~if~ilaaILh 55 (793)
+|++|+||++|++ ..++++||+++|+.|+.||++|||+++++..||+|||||||
T Consensus 263 ~~~~y~yL~~g~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~dD~~~f~~~~~Am~~lG~~~~e~~~i~~ilaaILh 342 (784)
T 2v26_A 263 SPDNFRYLNRGCTRYFANKETDKQILQNRKSPEYLKAGSLKDPLLDDHGDFIRMCTAMKKIGLDDEEKLDLFRVVAGVLH 342 (784)
T ss_dssp CGGGCHHHHTSCCCCBCCHHHHTTSCGGGCCHHHHHHCCBCCSSCCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred ChhhCccccCCCccccccccccccccccccccccccccccCCCCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Confidence 5789999999753 24678999999999999999999999999999999999999
Q ss_pred hcCeeEEeeCC-CCceee--cCchHHHHHHHHhCCCHHHHHHHHccceee-----ecCceEEecCCHHHHHHHHHHHHHH
Q 003820 56 LGNVSFTVIDN-ENHVEP--VADEGLITVAKLIGCDIGELKLALSTRKMR-----VGNDTIVQNLTLSQATDTRDALAKS 127 (793)
Q Consensus 56 LGNi~F~~~~~-~~~~~~--~~~~~l~~~a~LLgv~~~~L~~~L~~~~i~-----~~~e~i~~~lt~~qA~~~rdaLak~ 127 (793)
||||+|...++ ++.+.+ .+.+.++.||.||||++++|.++||+|++. ++|+.+++++|++||.++||||||+
T Consensus 343 LGNi~F~~~~~~~~~~~v~~~~~~~l~~~a~LLgv~~~~L~~aL~~r~~~t~~g~~~ge~i~~~l~~~qA~~~rdalaK~ 422 (784)
T 2v26_A 343 LGNIDFEEAGSTSGGCNLKNKSTQALEYCAELLGLDQDDLRVSLTTRVMLTTAGGAKGTVIKVPLKVEQANNARDALAKT 422 (784)
T ss_dssp HHTCCEEECTTTTSSEEECGGGHHHHHHHHHHHTCCHHHHHHHHHEEEC-----------CEEECCHHHHHHHHHHHHHH
T ss_pred cccceeeeccCCCCccccccCCHHHHHHHHHHhCCCHHHHHHHHhhcEEeccccCCCCCeEeecCCHHHHHHHHHHHHHH
Confidence 99999987532 233444 457899999999999999999999999987 6789999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhccCCCCCcceeEEeecCCCccCCCCChhHHHHHHhhHHHHHHHHHHhhHHHHHHHhhcCCccc
Q 003820 128 IYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWA 207 (793)
Q Consensus 128 LY~rLF~wlV~~IN~~l~~~~~~~~~~IgILDI~GFE~f~~NsfEQlcINyaNEkLq~~f~~~~f~~eqeeY~~EgI~w~ 207 (793)
||++||+|||.+||.+|... ....+||||||||||+|+.|||||||||||||||||+||+|+|+.||+||.+|||+|+
T Consensus 423 lY~rLF~wlV~~IN~~l~~~--~~~~~IGvLDI~GFE~f~~NsFEQlcINyaNEkLQq~F~~~~f~~EqeeY~~EgI~w~ 500 (784)
T 2v26_A 423 VYSHLFDHVVNRVNQCFPFE--TSSYFIGVLDIAGFEYFEHNSFEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVN 500 (784)
T ss_dssp HHHHHHHHHHHHHHTTSCCS--CCSEEEEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHHHhcCcc--cccceeeecccCCcccCCcCCHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCcc
Confidence 99999999999999999753 3467999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCchhHHHhhhcCCCccccccccccCCCCCCcHHHHHHHHHHcCCCCccccCC------------CCCcEEEecCc
Q 003820 208 KVDFEDNKDCLNLFEKKPLGLLSLLDEESTFPNGTDLTFANKLKQHLNSNPCFRGER------------DKSFTVSHYAG 275 (793)
Q Consensus 208 ~i~f~dN~~~ldLie~kp~Gil~lLDee~~~p~~tD~~f~~kl~~~~~~~~~~~~~~------------~~~F~I~HyaG 275 (793)
+|+|.||++|||||+++|.|||+||||||++|++||.+|++||++++++|++|..|+ +..|+|+||||
T Consensus 501 ~i~f~DN~~~idLie~kp~GIlslLDEe~~~p~~tD~~f~~kl~~~~~~~~~~~~p~~~~~~~~~~~~~~~~F~I~HyAG 580 (784)
T 2v26_A 501 EVHYVDNQDCIDLIEARLVGILDILDEENRLPQPSDQHFTSAVHQKHKDHFRLSIPRKSKLAIHRNIRDDEGFIIRHFAG 580 (784)
T ss_dssp CCCCCCCHHHHHHHHCTTTSHHHHHHHHHHSSSCCHHHHHHHHHHHTTTCTTEECGGGCSSGGGTTSCTTSEEEEEETTE
T ss_pred cccccChHHHHHHHhhccccHHHHHHHHhcCCCCChHHHHHHHHHHhCCCcccccCCCccccccccccCCCceEeeecCc
Confidence 999999999999999999999999999999999999999999999999999886543 24899999999
Q ss_pred cccccccchhhhccccccHHHHHHHhhcCCchH-HHhhhcccccCCCCccCCCccCCCCCCCCccHHHHHHHHHHHHHHH
Q 003820 276 EVIYDTTGFLEKNRDLLHLDSIELLSSCSCHLP-QIFASNMLSQSNKPVVGPLYKAGGADSQKLSVATKFKGQLFQLMQR 354 (793)
Q Consensus 276 ~V~Y~v~gfleKN~D~l~~~~~~ll~~S~~~~~-~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~f~~~L~~Lm~~ 354 (793)
+|+|++.|||+||+|+|++++++||++|+++++ .+|+....... . . +........+||+++|+.||+.||++
T Consensus 581 ~V~Y~~~gfleKN~D~l~~~~~~ll~~S~~~~l~~Lf~~~~~~~~-~-----~-~~~~~~~~~~Tv~~~fk~sL~~Lm~~ 653 (784)
T 2v26_A 581 AVCYETTQFVEKNNDALHMSLESLICESRDKFIRELFESSTNNNK-D-----T-KQKAGKLSFISVGNKFKTQLNLLLDK 653 (784)
T ss_dssp EEEEECTTHHHHTBCCCCHHHHHHHHTCSCHHHHHHC-----------------------CCCCBHHHHHHHHHHHHHHH
T ss_pred cEeeeccCHHHhccchhhHHHHHHHHhchhhHHHHHccccccccc-C-----c-ccCCCCCccccHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999975 58875431110 0 0 00011234589999999999999999
Q ss_pred HhccCCeeeeecCCCCCCCCCccchhHHHHHhhhhChhHHHHHHhcCCCCccChHHHHHHhhccccccCCCCChHHHHHH
Q 003820 355 LESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFLLLESVASQDPLSVSVA 434 (793)
Q Consensus 355 L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~eF~~RY~~L~~~~~~~~d~~~~~~~ 434 (793)
|.+|+||||||||||+.+.|+.||..+|++||||+||||+|||+|+|||+|++|.+|+.||++|+|..++..|+++.|+.
T Consensus 654 L~~t~phfVRCIkPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~R~~f~eF~~RY~~L~~~~~~~~d~~~~~~~ 733 (784)
T 2v26_A 654 LRSTGASFIRCIKPNLKMTSHHFEGAQILSQLQCSGMVSVLDLMQGGFPSRASFHELYNMYKKYMPDKLARLDPRLFCKA 733 (784)
T ss_dssp HHTSEEEEEEEECCCSSCCSSCCCHHHHHHHHHHTTHHHHHHHHTSCCSEEEEHHHHHHHHGGGCCHHHHTSCHHHHHHH
T ss_pred HHccCCeeEEEecCCcccccCccccccccccccccccHHHHHHHHhcCCccccHHHHHHHHhhcCCcccCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999987767799999999
Q ss_pred HHHHcCCCCcceeecceeeeeeecccccccccccccchhhHhhhhhhcccc
Q 003820 435 ILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTRNRTLHGILRVQSCFRGHQ 485 (793)
Q Consensus 435 il~~~~~~~~~~~vGkTKVFlr~~~~~~LE~~R~~~l~aa~~IQ~~~Rg~~ 485 (793)
+|..+++++++|++|+||||||.+++..||.++.........|++.+|+|+
T Consensus 734 ll~~~~~~~~~~~~G~TKVF~r~g~~~~le~~~~~~~~~~~~ii~~v~~wl 784 (784)
T 2v26_A 734 LFKALGLNEIDYKFGLTKVFFRPGKFAEFDQIMKSDPDHLAELVKRVNHWL 784 (784)
T ss_dssp HHHHTTCCGGGEEECSSEEEECTTCHHHHHHHHCCCHHHHHHHHHHHHHHC
T ss_pred HHHHcCCCcCcEEeCCceEEEcCCHHHHHHHHHhhCHHHHHHHHHHHHhhC
Confidence 999999999999999999999999999999987666555555667777664
No 11
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=100.00 E-value=4.7e-120 Score=1068.00 Aligned_cols=458 Identities=40% Similarity=0.701 Sum_probs=384.6
Q ss_pred CCccCcc-ccCCCccccCCcccHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhcCeeEEeeCCCCceeecCchHHHH
Q 003820 2 SAKEYKY-LRQSSCYSINGVDDAEQFRIVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNENHVEPVADEGLIT 80 (793)
Q Consensus 2 ~~~~y~y-L~~~~~~~~~~~dD~~~f~~~~~Al~~lg~~~~~~~~if~ilaaILhLGNi~F~~~~~~~~~~~~~~~~l~~ 80 (793)
+|++|+| |++| |..++++||+++|+.|+.||++|||+++++..||+|||||||||||+|. .++++.+.+.+.+.++.
T Consensus 300 ~~~~y~yll~~g-~~~~~~~dD~~~f~~~~~Am~~lGf~~~e~~~i~~ilaaILhLGNi~F~-~~~~~~~~~~~~~~l~~ 377 (770)
T 1w9i_A 300 GPESFNYLNQSG-CVDIKGVSDSEEFKITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFE-KGAGEGAVLKDKTALNA 377 (770)
T ss_dssp CGGGCTTTSSSS-CCCCTTCCHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHTCCCE-ECSSSSEECSCCHHHHH
T ss_pred ChhhccccccCC-ccccCCCchHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcCceEe-cCCCCccccCChHHHHH
Confidence 5789999 8775 7899999999999999999999999999999999999999999999999 55667788899999999
Q ss_pred HHHHhCCCHHHHHHHHccceeeecCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCcceeEEeec
Q 003820 81 VAKLIGCDIGELKLALSTRKMRVGNDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDI 160 (793)
Q Consensus 81 ~a~LLgv~~~~L~~~L~~~~i~~~~e~i~~~lt~~qA~~~rdaLak~LY~rLF~wlV~~IN~~l~~~~~~~~~~IgILDI 160 (793)
+|.||||++++|.++||++++.+|+|.+++++|++||.++||||||+||++||+|||.+||.+|..... ..+||||||
T Consensus 378 ~a~LLgv~~~~L~~aL~~~~~~~~~e~v~~~~~~~qA~~~rdalaK~lY~rLF~wlV~~IN~~l~~~~~--~~~IGvLDI 455 (770)
T 1w9i_A 378 ASTVFGVNPSVLEKALMEPRILAGRDLVAQHLNVEKSSSSRDALVKALYGRLFLWLVKKINNVLCQERK--AYFIGVLDI 455 (770)
T ss_dssp HHHHHTCCHHHHHHHHHSCEEEETTEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSCC--SEEEEEEEC
T ss_pred HHHHhCCCHHHHHHHhhCcEEEeCCeeEEeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--CCeeeeccC
Confidence 999999999999999999999999999999999999999999999999999999999999999986433 789999999
Q ss_pred CCCccCCCCChhHHHHHHhhHHHHHHHHHHhhHHHHHHHhhcCCcccccccC-CchhHHHhhhcC-CCccccccccccCC
Q 003820 161 YGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFE-DNKDCLNLFEKK-PLGLLSLLDEESTF 238 (793)
Q Consensus 161 ~GFE~f~~NsfEQlcINyaNEkLq~~f~~~~f~~eqeeY~~EgI~w~~i~f~-dN~~~ldLie~k-p~Gil~lLDee~~~ 238 (793)
||||+|+.|||||||||||||||||+||+|+|+.||+||.+|||+|+.|+|. ||++|||||+++ |.|||+||||||++
T Consensus 456 ~GFE~F~~NsFEQlCINyaNEkLQq~Fn~~~f~~EqeeY~~EgI~w~~i~f~~dn~~~idLiek~~p~GilslLDEec~~ 535 (770)
T 1w9i_A 456 YGFEIFKVNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPGILALLDEQSVF 535 (770)
T ss_dssp CCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCGGGGGHHHHHHHHCTTTTCHHHHHHHHHSS
T ss_pred ccccccccCCHHHHHHHhhHHHHHHHHHhhhhHHHHHHhhccCCCceeeccccCcHHHHHHHhCCCCCchhhhhhhhhCC
Confidence 9999999999999999999999999999999999999999999999999995 999999999984 99999999999999
Q ss_pred CCCCcHHHHHHH-HHHcCCCCccccCCC--CCcEEEecCccccccccchhhhccccccHHHHHHHhhcCCchH-HHhhhc
Q 003820 239 PNGTDLTFANKL-KQHLNSNPCFRGERD--KSFTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCSCHLP-QIFASN 314 (793)
Q Consensus 239 p~~tD~~f~~kl-~~~~~~~~~~~~~~~--~~F~I~HyaG~V~Y~v~gfleKN~D~l~~~~~~ll~~S~~~~~-~lf~~~ 314 (793)
|++||.+|++|| .+++++||+|..++. ..|+|+||||+|+|++.||++||+|+|++++++||++|+++++ .+|...
T Consensus 536 p~~tD~~f~~kL~~~~~~~~~~f~~p~~~~~~F~I~HyAG~V~Y~~~gfleKNkD~l~~~~~~ll~~S~~~~v~~Lf~~~ 615 (770)
T 1w9i_A 536 PNATDNTLITKLHSHFSKKNAKYEEPRFSKTEFGVTHYAGQVMYEIQDWLEKNKDPLQQDLELCFKDSSDNVVTKLFNDP 615 (770)
T ss_dssp SSCCHHHHHHHHHHHHTTTSTTEECCSSCSSEEEEEETTEEEEEECTTHHHHHHCCCCHHHHHHHHTCSSTTHHHHHHCH
T ss_pred CCCChHHHHHHHHHHhcCCCCCccCCCCCCCceEeeccCccccccccChhhhccCcccHHHHHHHHhchHHHHHHHhhcc
Confidence 999999999996 567889999987763 7999999999999999999999999999999999999999865 688754
Q ss_pred ccccCCCCccCCCccCCCCCCCCccHHHHHHHHHHHHHHHHhccCCeeeeecCCCCCCCCCccchhHHHHHhhhhChhHH
Q 003820 315 MLSQSNKPVVGPLYKAGGADSQKLSVATKFKGQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEV 394 (793)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~tv~~~f~~~L~~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~ 394 (793)
... +. ++ .....+||+++|+.||+.||++|.+|+||||||||||+.+.|+.||..+|++||||+||||+
T Consensus 616 ~~~-------~~-~~---k~~~~~Tv~~~fk~sL~~Lm~~L~~t~phfVRCIkPN~~k~p~~fd~~~V~~QLr~~GvlE~ 684 (770)
T 1w9i_A 616 NIA-------SR-AK---KGANFITVAAQYKEQLASLMATLETTNPHFVRCIIPNNKQLPAKLEDKVVLDQLRCNGVLEG 684 (770)
T ss_dssp HHH-------CC-CE---ETTEECCHHHHHHHHHHHHHHHHHTSEEEEEEEECSCSSCCSSCCCHHHHHHHHHHSSHHHH
T ss_pred CCC-------CC-CC---CCCCCcchhHHHHHHHHHHHHHHHhcCceeeeeecCCcccccCccCchhhHhHhcccchHHH
Confidence 310 00 00 11235899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCccChHHHHHHhhccccccCCC--CChHHHHHHHHHHcCCCCcceeecceeeeeeecccccccccccccch
Q 003820 395 VRISRSGFPTRMSHQKFARRYGFLLLESVAS--QDPLSVSVAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTRNRTLH 472 (793)
Q Consensus 395 vri~r~Gyp~r~~~~eF~~RY~~L~~~~~~~--~d~~~~~~~il~~~~~~~~~~~vGkTKVFlr~~~~~~LE~~R~~~l~ 472 (793)
|||+|+|||+|++|.+|+.||++|.| .++. .|+++.|+.||..+++++++|++|+||||||.+++..||++|.+.+.
T Consensus 685 iri~r~Gyp~R~~f~eF~~RY~~L~~-~~~~~~~d~k~~~~~lL~~~~~~~~~~~~G~TKVF~r~~~l~~LE~~R~~~l~ 763 (770)
T 1w9i_A 685 IRITRKGFPNRIIYADFVKRYYLLAP-NVPRDAEDSQKATDAVLKHLNIDPEQFRFGITKIFFRAGQLARIEEARELRGD 763 (770)
T ss_dssp HHHTTSSCCEEEESCC------------------------------------CCCCCSSEEEECTTTTTC----------
T ss_pred HHHHHhcCcccccHHHHHHHHHHhcc-ccccCCCCHHHHHHHHHHhcCCCcccEEeCCeeEEecccHHHHHHHHHHHHHH
Confidence 99999999999999999999999998 6554 38899999999999999999999999999999999999999998886
Q ss_pred hhH
Q 003820 473 GIL 475 (793)
Q Consensus 473 aa~ 475 (793)
.++
T Consensus 764 ~~~ 766 (770)
T 1w9i_A 764 YKD 766 (770)
T ss_dssp ---
T ss_pred HHh
Confidence 543
No 12
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=99.76 E-value=6e-18 Score=208.52 Aligned_cols=185 Identities=17% Similarity=0.210 Sum_probs=136.0
Q ss_pred chhhHhhhhhhcccccchhhcccccchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHhhhhHHHHHH
Q 003820 471 LHGILRVQSCFRGHQARLCLKELRRGIVALQSFIRGEKIRKEYALVLQRHRAAVVIQRQIKSRVARQKLKNIKYSSIMIQ 550 (793)
Q Consensus 471 l~aa~~IQ~~~Rg~~~R~~~~~~~~a~i~IQs~~Rg~~aRr~~~~l~~~~~AAi~IQ~~~R~~~~R~~~~~~r~aai~IQ 550 (793)
..+|+.||++||||.+|+.|..++.+++.||++|||+++|+.|..++ ...||+.||++||||++|+.|...+++++.||
T Consensus 816 ~~AAi~IQs~~Rg~~~Rk~y~~lr~aai~IQs~~Rg~laRr~~~~lr-~~~aav~IQ~~~Rg~l~R~~y~~~~~aai~iQ 894 (1080)
T 2dfs_A 816 TRAAIIIQKFQRMYVVRKRYQCMRDATIALQALLRGYLVRNKYQMML-REHKSIIIQKHVRGWLARVHYHRTLKAIVYLQ 894 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHTTTHHHHHTTTTHHHHHHHH
T ss_pred chhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 46889999999999999999999999999999999999999998876 55799999999999999999999999999999
Q ss_pred HHHhhHHHHhhhhhhhhhHhHhh----------hc--------------CC-------------hhHHHHHHHHH---HH
Q 003820 551 SVIRGWLVRRCSGDICLLKSVES----------KG--------------ND-------------SDEVLVKASFL---AE 590 (793)
Q Consensus 551 s~~Rg~~aRr~~~~l~~~~~~~~----------~~--------------~~-------------~~e~~~~~~~l---~~ 590 (793)
+.|||+++|+.+..++..++... .+ .. ..++..+...+ ..
T Consensus 895 s~~R~~laRr~~~~Lk~ear~~~~l~~~~~~LE~kl~eLq~rL~~~e~~n~~L~~~~~~~~~~~~~e~~~L~~~l~~le~ 974 (1080)
T 2dfs_A 895 CCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRM 974 (1080)
T ss_dssp HHHHHHHHHHHTTTC-----------------------------------------CHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998876654110 00 00 00111111111 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 003820 591 LQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSLSIAKKSLA 656 (793)
Q Consensus 591 lq~r~~~~e~~l~~~e~e~~~L~~~l~~~e~~~~ele~k~~~~ee~~qkq~~~lq~~L~a~~~sla 656 (793)
++.+..+++.++.++++++++|+++++.+.++.+++|++...+.+.++....+|+++....+.++.
T Consensus 975 ~~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~~e~~~L~qq~~ 1040 (1080)
T 2dfs_A 975 SEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKE 1040 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122333444556677788888888888888888888888777777777777777776666655543
No 13
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus}
Probab=98.96 E-value=1.9e-10 Score=92.13 Aligned_cols=51 Identities=25% Similarity=0.392 Sum_probs=36.5
Q ss_pred hhhHhhhhhhcccccchhhcccccchhhhhhHHHHHHHHHHHHHHHhHHHHH
Q 003820 472 HGILRVQSCFRGHQARLCLKELRRGIVALQSFIRGEKIRKEYALVLQRHRAA 523 (793)
Q Consensus 472 ~aa~~IQ~~~Rg~~~R~~~~~~~~a~i~IQs~~Rg~~aRr~~~~l~~~~~AA 523 (793)
.+++.||++||||++|+.|..++.+++.||++|||+++|+.|..++ .++||
T Consensus 6 ~aai~IQ~~~Rg~~~Rk~~~~~r~aai~IQ~~~Rg~~aR~~~~~~r-~~~aA 56 (58)
T 2ix7_C 6 AACIRIQKTIRGWLLRKRYLCMQRAAITVQRYVRGYQARCYAKFLR-RTKAA 56 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCc
Confidence 4567777777777777777777777777777777777777776665 33444
No 14
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus}
Probab=98.92 E-value=2e-09 Score=86.16 Aligned_cols=51 Identities=22% Similarity=0.324 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHhhhhHHHHHHHHHhhHHHHhhhhhhhhhH
Q 003820 519 RHRAAVVIQRQIKSRVARQKLKNIKYSSIMIQSVIRGWLVRRCSGDICLLK 569 (793)
Q Consensus 519 ~~~AAi~IQ~~~R~~~~R~~~~~~r~aai~IQs~~Rg~~aRr~~~~l~~~~ 569 (793)
.+.||++||++||||++|+.|..++.+++.||+.|||+++|+.+..++...
T Consensus 4 ~~~aai~IQ~~~Rg~~~Rk~~~~~r~aai~IQ~~~Rg~~aR~~~~~~r~~~ 54 (58)
T 2ix7_C 4 LRAACIRIQKTIRGWLLRKRYLCMQRAAITVQRYVRGYQARCYAKFLRRTK 54 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 346888889999999999988888889999999999999998888766543
No 15
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}
Probab=98.89 E-value=2e-09 Score=82.60 Aligned_cols=46 Identities=22% Similarity=0.301 Sum_probs=35.9
Q ss_pred cccchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHH
Q 003820 493 LRRGIVALQSFIRGEKIRKEYALVLQRHRAAVVIQRQIKSRVARQKL 539 (793)
Q Consensus 493 ~~~a~i~IQs~~Rg~~aRr~~~~l~~~~~AAi~IQ~~~R~~~~R~~~ 539 (793)
++.+++.||++|||+++|+.|..++ +..||++||++||||++|+.|
T Consensus 2 ~r~a~i~iQ~~~Rg~l~R~~~~~~~-~~~aai~IQ~~~Rg~~~Rk~y 47 (48)
T 1n2d_C 2 ISQAIKYLQNNIKGFIIRQRVNDEM-KVNCATLLQAAYRGHSIRANV 47 (48)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhHHHHHhh
Confidence 4567888888888888888887765 456888888888888888766
No 16
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}
Probab=98.67 E-value=3.3e-08 Score=75.75 Aligned_cols=42 Identities=24% Similarity=0.354 Sum_probs=39.8
Q ss_pred HHHHHHHHHhhhHHHHHHHHhhhh--HHHHHHHHHhhHHHHhhh
Q 003820 521 RAAVVIQRQIKSRVARQKLKNIKY--SSIMIQSVIRGWLVRRCS 562 (793)
Q Consensus 521 ~AAi~IQ~~~R~~~~R~~~~~~r~--aai~IQs~~Rg~~aRr~~ 562 (793)
.|++.||++|||+++|+.|...+. |++.||+.||||++|+.|
T Consensus 4 ~a~i~iQ~~~Rg~l~R~~~~~~~~~~aai~IQ~~~Rg~~~Rk~y 47 (48)
T 1n2d_C 4 QAIKYLQNNIKGFIIRQRVNDEMKVNCATLLQAAYRGHSIRANV 47 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhh
Confidence 589999999999999999999887 999999999999999876
No 17
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.30 E-value=7.9e-06 Score=102.85 Aligned_cols=46 Identities=17% Similarity=0.119 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHhhh---hHHHHHHHHHhhHHHHhhhhh
Q 003820 519 RHRAAVVIQRQIKSRVARQKLKNIK---YSSIMIQSVIRGWLVRRCSGD 564 (793)
Q Consensus 519 ~~~AAi~IQ~~~R~~~~R~~~~~~r---~aai~IQs~~Rg~~aRr~~~~ 564 (793)
...+++.||++||||++|+.|.+++ .|++.||+.||+|++++.+..
T Consensus 791 l~~~~~~iQ~~~Rg~l~R~~~~k~~~~~~a~~~iQ~~~r~~~~~k~~~~ 839 (1184)
T 1i84_S 791 ITDVIIAFQAQCRGYLARKAFAKRQQQLESIFCIQYNVRSFMNVXHWPW 839 (1184)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 3468999999999999999999874 699999999999999987643
No 18
>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=97.82 E-value=1.5e-05 Score=64.49 Aligned_cols=45 Identities=20% Similarity=0.234 Sum_probs=38.5
Q ss_pred ccchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHH
Q 003820 494 RRGIVALQSFIRGEKIRKEYALVLQRHRAAVVIQRQIKSRVARQK 538 (793)
Q Consensus 494 ~~a~i~IQs~~Rg~~aRr~~~~l~~~~~AAi~IQ~~~R~~~~R~~ 538 (793)
...++.||+.+||+++|+.|.++..++.|+.+||+++|+|..++.
T Consensus 4 ~~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~lr~ 48 (63)
T 2bl0_A 4 GEIVKVVQAAARGWVERKHFRQAREKSVSARIIQDNIRAYLEFKN 48 (63)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 456789999999999999999988777888899999999987653
No 19
>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A
Probab=97.81 E-value=2e-05 Score=64.07 Aligned_cols=46 Identities=30% Similarity=0.398 Sum_probs=38.7
Q ss_pred ccchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHH
Q 003820 494 RRGIVALQSFIRGEKIRKEYALVLQRHRAAVVIQRQIKSRVARQKL 539 (793)
Q Consensus 494 ~~a~i~IQs~~Rg~~aRr~~~~l~~~~~AAi~IQ~~~R~~~~R~~~ 539 (793)
...++.||+.+||+++|+.|.++..+..|+.+||+++|+|..++.+
T Consensus 6 ~~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~l~~w 51 (64)
T 1wdc_A 6 SKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNW 51 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 4567889999999999999998887778888999999999876543
No 20
>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A
Probab=96.91 E-value=0.0015 Score=52.76 Aligned_cols=43 Identities=28% Similarity=0.427 Sum_probs=38.7
Q ss_pred HHHHHHHHHhhhHHHHHHHHhh---hhHHHHHHHHHhhHHHHhhhh
Q 003820 521 RAAVVIQRQIKSRVARQKLKNI---KYSSIMIQSVIRGWLVRRCSG 563 (793)
Q Consensus 521 ~AAi~IQ~~~R~~~~R~~~~~~---r~aai~IQs~~Rg~~aRr~~~ 563 (793)
..++.||+.+||+++|+.|.+. +.|+..||..+|+|+.++...
T Consensus 7 ~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~l~~w~ 52 (64)
T 1wdc_A 7 KIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNWQ 52 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCh
Confidence 5789999999999999999998 778899999999999987653
No 21
>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=96.90 E-value=0.0013 Score=53.12 Aligned_cols=43 Identities=23% Similarity=0.308 Sum_probs=38.6
Q ss_pred HHHHHHHHHhhhHHHHHHHHhh---hhHHHHHHHHHhhHHHHhhhh
Q 003820 521 RAAVVIQRQIKSRVARQKLKNI---KYSSIMIQSVIRGWLVRRCSG 563 (793)
Q Consensus 521 ~AAi~IQ~~~R~~~~R~~~~~~---r~aai~IQs~~Rg~~aRr~~~ 563 (793)
..++.||+.+||+++|+.|.+. +.|+..||..+|+|+.++...
T Consensus 5 ~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~lr~w~ 50 (63)
T 2bl0_A 5 EIVKVVQAAARGWVERKHFRQAREKSVSARIIQDNIRAYLEFKNWA 50 (63)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCh
Confidence 4689999999999999999998 778899999999999987653
No 22
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=96.78 E-value=0.0022 Score=77.04 Aligned_cols=48 Identities=25% Similarity=0.298 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHhh---hhHHHHHHHHHhhHHHHhhhhhhh
Q 003820 519 RHRAAVVIQRQIKSRVARQKLKNI---KYSSIMIQSVIRGWLVRRCSGDIC 566 (793)
Q Consensus 519 ~~~AAi~IQ~~~R~~~~R~~~~~~---r~aai~IQs~~Rg~~aRr~~~~l~ 566 (793)
...+|+.||++||||++|++|.++ +.|+++||+.||+|++||.+.-++
T Consensus 778 l~~~~~~iQa~~Rg~l~R~~~~k~~~~r~a~~~IQ~~~R~~~~~r~~~w~~ 828 (837)
T 1kk8_A 778 LSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNWQWWK 828 (837)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHH
Confidence 346899999999999999999988 679999999999999999875443
No 23
>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa}
Probab=96.60 E-value=0.01 Score=55.49 Aligned_cols=33 Identities=15% Similarity=0.181 Sum_probs=25.3
Q ss_pred HHHHhHHHHHHHHHHHhhhHHHHHHHHhhhhHH
Q 003820 514 ALVLQRHRAAVVIQRQIKSRVARQKLKNIKYSS 546 (793)
Q Consensus 514 ~~l~~~~~AAi~IQ~~~R~~~~R~~~~~~r~aa 546 (793)
+++..+..|++.||+++|||++|++|+....+.
T Consensus 39 nKI~yR~~~~i~iQktvR~~L~rkkhkPRi~g~ 71 (148)
T 3gn4_A 39 NKIKYRAEACIKMQKTIRMWLCKRRHKPRIDGL 71 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 445567788999999999999999888864433
No 24
>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa}
Probab=95.52 E-value=0.1 Score=48.81 Aligned_cols=21 Identities=33% Similarity=0.529 Sum_probs=19.2
Q ss_pred hhHHHHHHHHHhhHHHHhhhh
Q 003820 543 KYSSIMIQSVIRGWLVRRCSG 563 (793)
Q Consensus 543 r~aai~IQs~~Rg~~aRr~~~ 563 (793)
..++++||+.+|||++|+.++
T Consensus 45 ~~~~i~iQktvR~~L~rkkhk 65 (148)
T 3gn4_A 45 AEACIKMQKTIRMWLCKRRHK 65 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 469999999999999999986
No 25
>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus}
Probab=92.84 E-value=0.062 Score=35.38 Aligned_cols=19 Identities=32% Similarity=0.457 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHhhhHHHHH
Q 003820 519 RHRAAVVIQRQIKSRVARQ 537 (793)
Q Consensus 519 ~~~AAi~IQ~~~R~~~~R~ 537 (793)
...||++||..||+|+.++
T Consensus 5 Ee~aA~vIQrA~R~yl~~~ 23 (27)
T 2kxw_B 5 EEVSAIVIQRAYRRYLLKQ 23 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4467888888888887654
No 26
>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens}
Probab=92.78 E-value=0.086 Score=35.81 Aligned_cols=21 Identities=29% Similarity=0.482 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHhhhHHHHHHH
Q 003820 519 RHRAAVVIQRQIKSRVARQKL 539 (793)
Q Consensus 519 ~~~AAi~IQ~~~R~~~~R~~~ 539 (793)
...||++||..||+|+.|+..
T Consensus 5 Ee~aA~vIQrA~R~yl~rr~~ 25 (31)
T 2l53_B 5 EEVSAMVIQRAFRRHLLQRSL 25 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 446888888888888877543
No 27
>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens}
Probab=88.31 E-value=0.3 Score=33.19 Aligned_cols=20 Identities=30% Similarity=0.429 Sum_probs=17.6
Q ss_pred hHHHHHHHHHhhHHHHhhhh
Q 003820 544 YSSIMIQSVIRGWLVRRCSG 563 (793)
Q Consensus 544 ~aai~IQs~~Rg~~aRr~~~ 563 (793)
.+|++||.+||+|+.|+...
T Consensus 7 ~aA~vIQrA~R~yl~rr~~~ 26 (31)
T 2l53_B 7 VSAMVIQRAFRRHLLQRSLK 26 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 48999999999999988754
No 28
>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus}
Probab=86.97 E-value=0.37 Score=31.71 Aligned_cols=19 Identities=32% Similarity=0.487 Sum_probs=16.6
Q ss_pred hHHHHHHHHHhhHHHHhhh
Q 003820 544 YSSIMIQSVIRGWLVRRCS 562 (793)
Q Consensus 544 ~aai~IQs~~Rg~~aRr~~ 562 (793)
.+|++||.+||+++.++..
T Consensus 7 ~aA~vIQrA~R~yl~~~~~ 25 (27)
T 2kxw_B 7 VSAIVIQRAYRRYLLKQKV 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHHHHHHHHhhh
Confidence 5899999999999998753
No 29
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=86.79 E-value=0.67 Score=57.02 Aligned_cols=38 Identities=11% Similarity=0.230 Sum_probs=19.8
Q ss_pred HHHHHHHHhhhHHHHHHHHhhhhHHHHHHHHHhhHHHHh
Q 003820 522 AAVVIQRQIKSRVARQKLKNIKYSSIMIQSVIRGWLVRR 560 (793)
Q Consensus 522 AAi~IQ~~~R~~~~R~~~~~~r~aai~IQs~~Rg~~aRr 560 (793)
+|++|| .+|+|++|++|++++.+++.||..+|++..|+
T Consensus 777 ~~~~iq-~~r~~l~r~~~~k~~~~a~~i~~~~r~~~~r~ 814 (1052)
T 4anj_A 777 LAELVK-RVNHWLICSRWKKVQWCSLSVIKLKNKIKYRA 814 (1052)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444 34555555555555555555555555544443
No 30
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=83.01 E-value=19 Score=33.54 Aligned_cols=68 Identities=9% Similarity=0.109 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 580 EVLVKASFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSS 647 (793)
Q Consensus 580 e~~~~~~~l~~lq~r~~~~e~~l~~~e~e~~~L~~~l~~~e~~~~ele~k~~~~ee~~qkq~~~lq~~ 647 (793)
.+..+...+..++.++..++.++..+..-++.++.++..+.-+...+|.++..++++-+.-...|=..
T Consensus 69 ~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM~r 136 (152)
T 3a7p_A 69 TLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARWLKK 136 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456667777888888888888888888888888888888888888888888777654444444333
No 31
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=77.45 E-value=2 Score=51.34 Aligned_cols=26 Identities=23% Similarity=0.411 Sum_probs=16.4
Q ss_pred HHHHHHHHHhhhHHHHHHHHhhhhHH
Q 003820 521 RAAVVIQRQIKSRVARQKLKNIKYSS 546 (793)
Q Consensus 521 ~AAi~IQ~~~R~~~~R~~~~~~r~aa 546 (793)
.+|+.||++||||++|++|+++++|+
T Consensus 769 ~~~~~iQ~~~Rg~l~R~~~~~~r~a~ 794 (795)
T 1w7j_A 769 AACIRIQKTIRGWLMRKKYMRMRRGD 794 (795)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46677777777777777776666543
No 32
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=73.58 E-value=31 Score=31.77 Aligned_cols=44 Identities=7% Similarity=0.104 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 591 LQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSME 634 (793)
Q Consensus 591 lq~r~~~~e~~l~~~e~e~~~L~~~l~~~e~~~~ele~k~~~~e 634 (793)
++..+.+.+.++..+..++..++.++...+++..++..+...++
T Consensus 80 L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~ 123 (138)
T 3hnw_A 80 LSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQ 123 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444444444444444433333
No 33
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=73.45 E-value=26 Score=30.20 Aligned_cols=25 Identities=12% Similarity=0.279 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 604 EKEEENDILHQRLQQYESRWSEYEQ 628 (793)
Q Consensus 604 ~~e~e~~~L~~~l~~~e~~~~ele~ 628 (793)
..+.+...|...+......+.+.|.
T Consensus 23 ~~~~e~~~L~~~l~eE~~~R~~aE~ 47 (97)
T 2eqb_B 23 DRDDEVKRLREDIAKENELRTKAEE 47 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 34
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=71.52 E-value=57 Score=33.08 Aligned_cols=71 Identities=10% Similarity=0.108 Sum_probs=40.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 579 DEVLVKASFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSLS 649 (793)
Q Consensus 579 ~e~~~~~~~l~~lq~r~~~~e~~l~~~e~e~~~L~~~l~~~e~~~~ele~k~~~~ee~~qkq~~~lq~~L~ 649 (793)
.+...+...+..++++...++.++.++.++.+.++..+...+.+..+++..+..........+..+..+++
T Consensus 90 kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~e~~~e~~ 160 (256)
T 3na7_A 90 RELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVENEVKNIKETQQ 160 (256)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555566666666666666666666666666666666666665555555555555555554444
No 35
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=70.41 E-value=31 Score=31.27 Aligned_cols=14 Identities=21% Similarity=0.439 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHHH
Q 003820 590 ELQRRVLKAEAALR 603 (793)
Q Consensus 590 ~lq~r~~~~e~~l~ 603 (793)
++.+.+..++.++.
T Consensus 40 elrr~iq~L~~el~ 53 (129)
T 3tnu_B 40 EMNRMIQRLRAEID 53 (129)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 36
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=69.95 E-value=46 Score=27.54 Aligned_cols=21 Identities=24% Similarity=0.340 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 003820 603 REKEEENDILHQRLQQYESRW 623 (793)
Q Consensus 603 ~~~e~e~~~L~~~l~~~e~~~ 623 (793)
..++.++..|+..++.++.+.
T Consensus 37 ~~~E~ev~~L~kKiq~lE~el 57 (81)
T 1ic2_A 37 KQLEDELVALQKKLKGTEDEL 57 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHH
Confidence 333334444444443333333
No 37
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=68.06 E-value=60 Score=30.84 Aligned_cols=63 Identities=17% Similarity=0.165 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 003820 596 LKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSLSIAKKSLAID 658 (793)
Q Consensus 596 ~~~e~~l~~~e~e~~~L~~~l~~~e~~~~ele~k~~~~ee~~qkq~~~lq~~L~a~~~sla~~ 658 (793)
.+++.++..+..++..++..+...+.+...+..++..+|.+.....-+|--+|.+++..+..+
T Consensus 93 ~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~eid~~~eLKalQ~~~eqE 155 (168)
T 3o0z_A 93 GDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLEIDLNYKLKSLQQRLEQE 155 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 344555556666666666666666666666667776666666444445556677777666543
No 38
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=68.03 E-value=19 Score=25.91 Aligned_cols=27 Identities=22% Similarity=0.353 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 598 AEAALREKEEENDILHQRLQQYESRWS 624 (793)
Q Consensus 598 ~e~~l~~~e~e~~~L~~~l~~~e~~~~ 624 (793)
+|.+.++++..+.+|.+.+..++++..
T Consensus 8 LE~r~k~le~~naeLEervstLq~EN~ 34 (42)
T 2oqq_A 8 LENRVKDLENKNSELEERLSTLQNENQ 34 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 333444444444444444444444433
No 39
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=67.04 E-value=46 Score=27.07 Aligned_cols=39 Identities=21% Similarity=0.253 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 599 EAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVW 637 (793)
Q Consensus 599 e~~l~~~e~e~~~L~~~l~~~e~~~~ele~k~~~~ee~~ 637 (793)
..++.+++.+|..|+++++.++.+..+-..+-.....++
T Consensus 6 ~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~El 44 (72)
T 3cve_A 6 HMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNL 44 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555544444444444333
No 40
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=66.96 E-value=54 Score=27.26 Aligned_cols=29 Identities=17% Similarity=0.200 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 589 AELQRRVLKAEAALREKEEENDILHQRLQ 617 (793)
Q Consensus 589 ~~lq~r~~~~e~~l~~~e~e~~~L~~~l~ 617 (793)
..|+.++..+-..+.-+..|+.+|+++..
T Consensus 9 eqLE~KIq~avdtI~lLqmEieELKekN~ 37 (81)
T 2jee_A 9 EKLEAKVQQAIDTITLLQMEIEELKEKNN 37 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444433333333333333333
No 41
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=66.89 E-value=25 Score=32.07 Aligned_cols=15 Identities=13% Similarity=0.257 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHHH
Q 003820 626 YEQKMKSMEEVWQKQ 640 (793)
Q Consensus 626 le~k~~~~ee~~qkq 640 (793)
+|..+..+...+..+
T Consensus 89 lE~eL~~~r~em~~q 103 (131)
T 3tnu_A 89 VEEQLAQLRCEMEQQ 103 (131)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 42
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=66.15 E-value=32 Score=33.38 Aligned_cols=50 Identities=24% Similarity=0.231 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 599 EAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSL 648 (793)
Q Consensus 599 e~~l~~~e~e~~~L~~~l~~~e~~~~ele~k~~~~ee~~qkq~~~lq~~L 648 (793)
+..+...+..+..|+.++..+..+...+..|......+..+++..|+.++
T Consensus 48 E~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el 97 (189)
T 2v71_A 48 EAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDL 97 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444444334444444433
No 43
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=64.04 E-value=40 Score=27.90 Aligned_cols=36 Identities=22% Similarity=0.273 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 602 LREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVW 637 (793)
Q Consensus 602 l~~~e~e~~~L~~~l~~~e~~~~ele~k~~~~ee~~ 637 (793)
...+-.|+..|+-.+.++++++..||.++++-.+++
T Consensus 21 ~E~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El 56 (81)
T 3qh9_A 21 AEELLQELRHLKIKVEELENERNQYEWKLKATKAEV 56 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 345667777888888888888888888887766554
No 44
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=63.80 E-value=27 Score=28.98 Aligned_cols=38 Identities=16% Similarity=0.179 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 600 AALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVW 637 (793)
Q Consensus 600 ~~l~~~e~e~~~L~~~l~~~e~~~~ele~k~~~~ee~~ 637 (793)
.++..++.+|..|+++++.++.+..+-..+-.....++
T Consensus 13 ~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~El 50 (79)
T 3cvf_A 13 QKVQDLETRNAELEHQLRAMERSLEEARAERERARAEV 50 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555555544444444433333333
No 45
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=63.22 E-value=29 Score=29.36 Aligned_cols=57 Identities=18% Similarity=0.213 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 580 EVLVKASFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEV 636 (793)
Q Consensus 580 e~~~~~~~l~~lq~r~~~~e~~l~~~e~e~~~L~~~l~~~e~~~~ele~k~~~~ee~ 636 (793)
++......+..++..+.+.+.....++..+..|.++...+..+..+.+.++..+...
T Consensus 15 Em~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~ 71 (89)
T 3bas_A 15 EMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSK 71 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 344444455555555555555555555555555555555555555555555554433
No 46
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=61.32 E-value=74 Score=26.83 Aligned_cols=35 Identities=17% Similarity=0.239 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 600 AALREKEEENDILHQRLQQYESRWSEYEQKMKSME 634 (793)
Q Consensus 600 ~~l~~~e~e~~~L~~~l~~~e~~~~ele~k~~~~e 634 (793)
.++..++++...++..++..+..+.+++.++..+.
T Consensus 14 eEm~~~eeel~~lke~l~k~e~~rkele~~~~~l~ 48 (89)
T 3bas_A 14 EEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLL 48 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444433
No 47
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=60.44 E-value=8.1 Score=29.59 Aligned_cols=30 Identities=7% Similarity=0.059 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 602 LREKEEENDILHQRLQQYESRWSEYEQKMK 631 (793)
Q Consensus 602 l~~~e~e~~~L~~~l~~~e~~~~ele~k~~ 631 (793)
+..+..|+++|+.++..+.++..++..++.
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344445555555555555555555555443
No 48
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=59.24 E-value=64 Score=27.14 Aligned_cols=13 Identities=31% Similarity=0.532 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHHH
Q 003820 625 EYEQKMKSMEEVW 637 (793)
Q Consensus 625 ele~k~~~~ee~~ 637 (793)
+++..+....+.|
T Consensus 67 ~~e~eLe~~~erW 79 (89)
T 2lw1_A 67 AAEQELEQAFERW 79 (89)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 49
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=58.91 E-value=1.7e+02 Score=33.11 Aligned_cols=55 Identities=11% Similarity=0.101 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 583 VKASFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVW 637 (793)
Q Consensus 583 ~~~~~l~~lq~r~~~~e~~l~~~e~e~~~L~~~l~~~e~~~~ele~k~~~~ee~~ 637 (793)
.+......++.+....+.++...+++..+++++++.++++..++|.+.+.+.+..
T Consensus 506 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~ 560 (597)
T 3oja_B 506 NLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQ 560 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHH
Confidence 3444445555555555666666666666666666666666666666555555443
No 50
>4dck_A Sodium channel protein type 5 subunit alpha; IQ-motif, EF-hand, voltage-gated sodium channel regulation, CTD binds to FGF13 and CAM. CAM binds to Ca2+.; 2.20A {Homo sapiens} PDB: 2kbi_A
Probab=58.89 E-value=8.3 Score=36.87 Aligned_cols=23 Identities=30% Similarity=0.504 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHh
Q 003820 519 RHRAAVVIQRQIKSRVARQKLKN 541 (793)
Q Consensus 519 ~~~AAi~IQ~~~R~~~~R~~~~~ 541 (793)
...||++||.+||.|+.|+.+..
T Consensus 129 e~~aA~~IQra~R~~~~r~~~~~ 151 (168)
T 4dck_A 129 EEVSAMVIQRAFRRHLLQRSLKH 151 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccccc
Confidence 34589999999999888766554
No 51
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=57.91 E-value=1e+02 Score=31.15 Aligned_cols=65 Identities=11% Similarity=0.112 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 581 VLVKASFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQ 645 (793)
Q Consensus 581 ~~~~~~~l~~lq~r~~~~e~~l~~~e~e~~~L~~~l~~~e~~~~ele~k~~~~ee~~qkq~~~lq 645 (793)
+..+......+..+..++..++..++.+...++..+...+....+.........+..+++...+.
T Consensus 99 ie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~e~~~e~~~l~ 163 (256)
T 3na7_A 99 EDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVENEVKNIKETQQIIF 163 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444445555555555555555555555555555554444444444444444433333333
No 52
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=57.14 E-value=1.1e+02 Score=27.55 Aligned_cols=27 Identities=26% Similarity=0.357 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 606 EEENDILHQRLQQYESRWSEYEQKMKS 632 (793)
Q Consensus 606 e~e~~~L~~~l~~~e~~~~ele~k~~~ 632 (793)
++....|...-..++..+.+++.++..
T Consensus 68 EE~~~~L~~~k~eLe~~l~el~~rlee 94 (129)
T 2fxo_A 68 EERCDQLIKNKIQLEAKVKEMNKRLED 94 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333
No 53
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=55.44 E-value=88 Score=25.89 Aligned_cols=33 Identities=18% Similarity=0.365 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 603 REKEEENDILHQRLQQYESRWSEYEQKMKSMEE 635 (793)
Q Consensus 603 ~~~e~e~~~L~~~l~~~e~~~~ele~k~~~~ee 635 (793)
......+...+.+|+..+.+..++...|..+++
T Consensus 34 s~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~ 66 (81)
T 1wt6_A 34 EAIRTDNQNFASQLREAEARNRDLEAHVRQLQE 66 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444555555555555444444443
No 54
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=54.86 E-value=87 Score=25.91 Aligned_cols=55 Identities=13% Similarity=0.156 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 591 LQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQ 645 (793)
Q Consensus 591 lq~r~~~~e~~l~~~e~e~~~L~~~l~~~e~~~~ele~k~~~~ee~~qkq~~~lq 645 (793)
+..++..++.+-..+++.+..|+.+++....+..-....++...+.+.-.+-+|.
T Consensus 11 ~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~ 65 (79)
T 3cvf_A 11 TQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELS 65 (79)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 3345556666666777777777777777776666666666666666655554443
No 55
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=54.04 E-value=67 Score=25.25 Aligned_cols=32 Identities=16% Similarity=0.169 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 595 VLKAEAALREKEEENDILHQRLQQYESRWSEY 626 (793)
Q Consensus 595 ~~~~e~~l~~~e~e~~~L~~~l~~~e~~~~el 626 (793)
...++.++..++.+|.+|..++..++.+..-+
T Consensus 25 ~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~L 56 (63)
T 1ci6_A 25 QEALTGECKELEKKNEALKERADSLAKEIQYL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555444333
No 56
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=54.02 E-value=1.2e+02 Score=27.20 Aligned_cols=51 Identities=16% Similarity=0.161 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 597 KAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSLSIA 651 (793)
Q Consensus 597 ~~e~~l~~~e~e~~~L~~~l~~~e~~~~ele~k~~~~ee~~qkq~~~lq~~L~a~ 651 (793)
.+...-..++..+..+...+...+....++....+.++... ..|..++...
T Consensus 73 ~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~----~~Lk~~led~ 123 (129)
T 2fxo_A 73 QLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDEC----SELKRDIDDL 123 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
Confidence 33333344444455555555555555555554444444333 4444444443
No 57
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=52.57 E-value=90 Score=30.84 Aligned_cols=64 Identities=14% Similarity=0.070 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHh
Q 003820 591 LQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMK----SMEEVWQKQMRSLQSSLSIAKKS 654 (793)
Q Consensus 591 lq~r~~~~e~~l~~~e~e~~~L~~~l~~~e~~~~ele~k~~----~~ee~~qkq~~~lq~~L~a~~~s 654 (793)
++.+...+..+...++.+...|..+++++.....+.|..+- .+--+.+..+.+++..|.+..++
T Consensus 137 ~~~~~~~L~~e~~~l~~~~~~l~~qlE~~v~~K~~~E~~L~~KF~~lLNeKK~KIR~lq~~Ll~~~~~ 204 (213)
T 1ik9_A 137 NQAKNEHLQKENERLLRDWNDVQGRFEKAVSAKEALETDLYKRFILVLNEKKTKIRSLHNKLLNAAQE 204 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 44445555666667777777788888888888877776543 34444557788888666554443
No 58
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=52.50 E-value=11 Score=46.40 Aligned_cols=43 Identities=14% Similarity=0.051 Sum_probs=34.6
Q ss_pred HHHHHHHhhhHHHHHHHHhhhhHHHHHHHHHhhHHHHhhhhhh
Q 003820 523 AVVIQRQIKSRVARQKLKNIKYSSIMIQSVIRGWLVRRCSGDI 565 (793)
Q Consensus 523 Ai~IQ~~~R~~~~R~~~~~~r~aai~IQs~~Rg~~aRr~~~~l 565 (793)
|..++.|+|+..++..++..+.+++.||+.+|++.+++...+.
T Consensus 767 a~~Ll~WIr~k~a~l~~r~~~~sl~~IQ~~ir~f~~fr~~ekp 809 (995)
T 2ycu_A 767 ANELVQWINDKQASLESRDFGDSIESVQSFMNAHKEYKKTEKP 809 (995)
T ss_dssp HHHHHHHTTTTTCCCSCHHHHHHHHHHHHHHHHHTTHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhcc
Confidence 4567788888888888888888999999999998777766543
No 59
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=52.50 E-value=60 Score=23.33 Aligned_cols=25 Identities=32% Similarity=0.312 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 591 LQRRVLKAEAALREKEEENDILHQR 615 (793)
Q Consensus 591 lq~r~~~~e~~l~~~e~e~~~L~~~ 615 (793)
|+.++..++....++++++.-|+.+
T Consensus 8 LE~r~k~le~~naeLEervstLq~E 32 (42)
T 2oqq_A 8 LENRVKDLENKNSELEERLSTLQNE 32 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333333333333333333333
No 60
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=51.61 E-value=1.3e+02 Score=26.72 Aligned_cols=37 Identities=19% Similarity=0.201 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 601 ALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVW 637 (793)
Q Consensus 601 ~l~~~e~e~~~L~~~l~~~e~~~~ele~k~~~~ee~~ 637 (793)
.-...|.+...|+..+....-.+.++|.++.++.+++
T Consensus 63 ~r~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl 99 (119)
T 3ol1_A 63 QREEAENTLQSFRQDVDNASLARLDLERKVESLQEEI 99 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHH
Confidence 3455677788888888888888888888888888775
No 61
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=51.10 E-value=96 Score=25.64 Aligned_cols=38 Identities=16% Similarity=0.159 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 585 ASFLAELQRRVLKAEAALREKEEENDILHQRLQQYESR 622 (793)
Q Consensus 585 ~~~l~~lq~r~~~~e~~l~~~e~e~~~L~~~l~~~e~~ 622 (793)
..-+.++.....+.+..+.+-.+|+..|+++|..-+..
T Consensus 32 r~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~e 69 (81)
T 3qh9_A 32 KIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAE 69 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHH
Confidence 33344444444444555555555555555555544433
No 62
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=50.73 E-value=58 Score=25.31 Aligned_cols=31 Identities=10% Similarity=0.082 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 596 LKAEAALREKEEENDILHQRLQQYESRWSEY 626 (793)
Q Consensus 596 ~~~e~~l~~~e~e~~~L~~~l~~~e~~~~el 626 (793)
..++.++..++.+|..|..++..++.+...+
T Consensus 25 ~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~L 55 (61)
T 1t2k_D 25 QSLEKKAEDLSSLNGQLQSEVTLLRNEVAQL 55 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555544444333
No 63
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=50.14 E-value=33 Score=27.74 Aligned_cols=36 Identities=28% Similarity=0.369 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 588 LAELQRRVLKAEAALREKEEENDILHQRLQQYESRW 623 (793)
Q Consensus 588 l~~lq~r~~~~e~~l~~~e~e~~~L~~~l~~~e~~~ 623 (793)
+.+|+.++..++.....+..||..|+.++..+..+.
T Consensus 31 i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El 66 (70)
T 1gd2_E 31 LKALETQVVTLKELHSSTTLENDQLRQKVRQLEEEL 66 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444445555544444444433
No 64
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=49.86 E-value=1.1e+02 Score=25.33 Aligned_cols=34 Identities=18% Similarity=0.234 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 604 EKEEENDILHQRLQQYESRWSEYEQKMKSMEEVW 637 (793)
Q Consensus 604 ~~e~e~~~L~~~l~~~e~~~~ele~k~~~~ee~~ 637 (793)
...+|+...+..+...+.+..+.+.+...+..++
T Consensus 28 ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~ 61 (81)
T 1wt6_A 28 SLSREMEAIRTDNQNFASQLREAEARNRDLEAHV 61 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666666677776666665544
No 65
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=49.54 E-value=71 Score=25.06 Aligned_cols=29 Identities=14% Similarity=0.125 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 596 LKAEAALREKEEENDILHQRLQQYESRWS 624 (793)
Q Consensus 596 ~~~e~~l~~~e~e~~~L~~~l~~~e~~~~ 624 (793)
..++.++..++.+|..|..++..++.+..
T Consensus 26 ~~Le~~v~~L~~~n~~L~~ei~~L~~e~~ 54 (63)
T 2wt7_A 26 DTLQAETDQLEDEKSALQTEIANLLKEKE 54 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555544444443
No 66
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=49.40 E-value=6.3e+02 Score=35.12 Aligned_cols=35 Identities=17% Similarity=0.284 Sum_probs=21.7
Q ss_pred HHHHHHHhHHHHHhHHHHhhHHHHHH-HhhhcCCcc
Q 003820 740 ELRRLKQMFEAWKKDYGSRLRETKVI-LNKLGSEEG 774 (793)
Q Consensus 740 el~~lk~~f~~wkk~~~~rlr~~~~~-~~~~~~~~~ 774 (793)
||.+-|...=.=--+||.+|++..-. |+.|..++|
T Consensus 2323 eLE~~r~~Li~~~~~~k~~L~~LEd~lL~~Ls~s~G 2358 (3245)
T 3vkg_A 2323 DTHKKRSDLLKIQGEFQVKLRILEKSLLNALSQASG 2358 (3245)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHTTTHHHHHHHHTTSS
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 55555555555556777777776554 666665554
No 67
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=49.35 E-value=47 Score=28.07 Aligned_cols=32 Identities=22% Similarity=0.343 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 596 LKAEAALREKEEENDILHQRLQQYESRWSEYE 627 (793)
Q Consensus 596 ~~~e~~l~~~e~e~~~L~~~l~~~e~~~~ele 627 (793)
.+++.++..++.||..|+.++++++.+...+.
T Consensus 39 ~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr 70 (87)
T 1hjb_A 39 LETQHKVLELTAENERLQKKVEQLSRELSTLR 70 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666666666666665555544443
No 68
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=49.10 E-value=1.7e+02 Score=27.33 Aligned_cols=71 Identities=20% Similarity=0.086 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhc
Q 003820 587 FLAELQRRVLKAEAALREKEEENDILHQRLQQ--------YESRWSEYEQKMKSMEEVW---QKQMRSLQSSLSIAKKSL 655 (793)
Q Consensus 587 ~l~~lq~r~~~~e~~l~~~e~e~~~L~~~l~~--------~e~~~~ele~k~~~~ee~~---qkq~~~lq~~L~a~~~sl 655 (793)
.+.+-+.+...++......+.|+++|.-.|=. .......++.+...+++.+ ...+.++|.+|...+.-+
T Consensus 66 ~l~~E~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~~lq~ql~~LK~v~ 145 (154)
T 2ocy_A 66 DIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLREKDTLLDTLTLQLKNLKKVM 145 (154)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344445555555555555555444421 1222233333333333332 234466777777777665
Q ss_pred cc
Q 003820 656 AI 657 (793)
Q Consensus 656 a~ 657 (793)
..
T Consensus 146 ~~ 147 (154)
T 2ocy_A 146 HS 147 (154)
T ss_dssp SC
T ss_pred HH
Confidence 54
No 69
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=48.34 E-value=1.3e+02 Score=25.86 Aligned_cols=40 Identities=15% Similarity=0.149 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 594 RVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSM 633 (793)
Q Consensus 594 r~~~~e~~l~~~e~e~~~L~~~l~~~e~~~~ele~k~~~~ 633 (793)
.+..++.+...++.++..|+.+++.++.+...++.++...
T Consensus 31 ~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea 70 (101)
T 3u1c_A 31 DKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKS 70 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444555555555555555555555555444433
No 70
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=48.15 E-value=1e+02 Score=34.98 Aligned_cols=46 Identities=15% Similarity=0.138 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 591 LQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEV 636 (793)
Q Consensus 591 lq~r~~~~e~~l~~~e~e~~~L~~~l~~~e~~~~ele~k~~~~ee~ 636 (793)
+++...+.+++..++.++.+.++++..+++.+..+.+++...+.++
T Consensus 521 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e 566 (597)
T 3oja_B 521 KLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQE 566 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHH
Confidence 3333334444444444444444444444444444444444444433
No 71
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=47.50 E-value=99 Score=27.33 Aligned_cols=52 Identities=23% Similarity=0.145 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 003820 606 EEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSLSIAKKSLAI 657 (793)
Q Consensus 606 e~e~~~L~~~l~~~e~~~~ele~k~~~~ee~~qkq~~~lq~~L~a~~~sla~ 657 (793)
..++..|....+..|....++...........+.+|..|..+-......|..
T Consensus 44 k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~vq~qL~~Lt~~Re~V~~eL~r 95 (112)
T 1x79_B 44 SHQISALVLRAQASEILLEELQQGLSQAKRDVQEQMAVLMQSREQVSEELVR 95 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567778888888888888888888888888878887777776666665543
No 72
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=46.81 E-value=78 Score=26.56 Aligned_cols=25 Identities=8% Similarity=0.093 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 610 DILHQRLQQYESRWSEYEQKMKSME 634 (793)
Q Consensus 610 ~~L~~~l~~~e~~~~ele~k~~~~e 634 (793)
..+..++..++.+..++..+|..++
T Consensus 59 ~~l~~~l~~~e~eLe~~~erWeeLe 83 (89)
T 2lw1_A 59 QKVLADMAAAEQELEQAFERWEYLE 83 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444333
No 73
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=46.13 E-value=1.2e+02 Score=29.16 Aligned_cols=44 Identities=16% Similarity=0.229 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 588 LAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMK 631 (793)
Q Consensus 588 l~~lq~r~~~~e~~l~~~e~e~~~L~~~l~~~e~~~~ele~k~~ 631 (793)
+..|+.+...+...+..+..|+..|+++++.++++...++....
T Consensus 22 V~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~~ 65 (190)
T 4emc_A 22 VANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQTS 65 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHH
Confidence 34445555555555666666666666666666655554444443
No 74
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=45.98 E-value=1.6e+02 Score=26.02 Aligned_cols=55 Identities=20% Similarity=0.171 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 582 LVKASFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEV 636 (793)
Q Consensus 582 ~~~~~~l~~lq~r~~~~e~~l~~~e~e~~~L~~~l~~~e~~~~ele~k~~~~ee~ 636 (793)
..+...+..+......+...++.+|..|..|.+.-.....-..++|.++....|.
T Consensus 38 ~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n~aiEr 92 (111)
T 2v66_B 38 SVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLNQAIER 92 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3344455555555556666677777777777766666666666666666655444
No 75
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=44.84 E-value=1.2e+02 Score=24.53 Aligned_cols=53 Identities=17% Similarity=0.298 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 593 RRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQ 645 (793)
Q Consensus 593 ~r~~~~e~~l~~~e~e~~~L~~~l~~~e~~~~ele~k~~~~ee~~qkq~~~lq 645 (793)
.++.+++.+-..+++.+..|+++++....+..-....++..-+.+.-.+-+|.
T Consensus 7 ~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~ 59 (72)
T 3cve_A 7 MKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFELT 59 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 34556666667777777777777777776666666666666666655554443
No 76
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=44.09 E-value=2e+02 Score=31.54 Aligned_cols=13 Identities=38% Similarity=0.424 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHH
Q 003820 588 LAELQRRVLKAEA 600 (793)
Q Consensus 588 l~~lq~r~~~~e~ 600 (793)
+.+.+..+.+++.
T Consensus 406 ~~~~~~~~~~~~~ 418 (471)
T 3mq9_A 406 LTEAQKGFQDVEA 418 (471)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHH
Confidence 3333333333333
No 77
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=43.86 E-value=78 Score=30.50 Aligned_cols=49 Identities=12% Similarity=0.243 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 589 AELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVW 637 (793)
Q Consensus 589 ~~lq~r~~~~e~~l~~~e~e~~~L~~~l~~~e~~~~ele~k~~~~ee~~ 637 (793)
..++.++......+..+..||..|.++|+....+++.++.++.+.++..
T Consensus 9 ~~~q~ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~ 57 (190)
T 4emc_A 9 NSVKQQIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQV 57 (190)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3445555566666777777788887777777777777777776666655
No 78
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=43.84 E-value=83 Score=26.17 Aligned_cols=15 Identities=20% Similarity=0.197 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHhccc
Q 003820 643 SLQSSLSIAKKSLAI 657 (793)
Q Consensus 643 ~lq~~L~a~~~sla~ 657 (793)
.|..++++-++-|..
T Consensus 65 ~Ld~EIatYRkLLEG 79 (84)
T 1gk4_A 65 ALDIEIATYRKLLEG 79 (84)
T ss_dssp HHHHHHHHHHHHHTC
T ss_pred hhHHHHHHHHHHHcC
Confidence 344455555555543
No 79
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=43.14 E-value=1.2e+02 Score=24.73 Aligned_cols=41 Identities=24% Similarity=0.268 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 597 KAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVW 637 (793)
Q Consensus 597 ~~e~~l~~~e~e~~~L~~~l~~~e~~~~ele~k~~~~ee~~ 637 (793)
.+-+++.++..|...|+.++...+.-...++.++..+|+++
T Consensus 34 DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeEl 74 (77)
T 2w83_C 34 DLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEEL 74 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555556666666666666666666666666666655
No 80
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=41.97 E-value=62 Score=35.30 Aligned_cols=55 Identities=16% Similarity=0.242 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 003820 597 KAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSLSIAKKSL 655 (793)
Q Consensus 597 ~~e~~l~~~e~e~~~L~~~l~~~e~~~~ele~k~~~~ee~~qkq~~~lq~~L~a~~~sl 655 (793)
.++.++..++++..+|+++++.++.+..++++++..++... ..|+..+...+...
T Consensus 7 ~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r----r~l~n~~~elkgnI 61 (403)
T 4etp_A 7 ALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVR----RTLHNELQELRGNI 61 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHCSE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHcCCCe
Confidence 44555555666666666666666666666666665555444 44566666655544
No 81
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=40.67 E-value=1.9e+02 Score=25.39 Aligned_cols=9 Identities=33% Similarity=0.235 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 003820 643 SLQSSLSIA 651 (793)
Q Consensus 643 ~lq~~L~a~ 651 (793)
.|+.+++..
T Consensus 94 ~L~~ql~~L 102 (110)
T 2v4h_A 94 YLQEQLEQL 102 (110)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333344333
No 82
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=40.66 E-value=80 Score=25.48 Aligned_cols=10 Identities=10% Similarity=0.043 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 003820 597 KAEAALREKE 606 (793)
Q Consensus 597 ~~e~~l~~~e 606 (793)
+++..+..++
T Consensus 33 ~LE~~v~~le 42 (70)
T 1gd2_E 33 ALETQVVTLK 42 (70)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 83
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=39.81 E-value=2.3e+02 Score=27.35 Aligned_cols=31 Identities=19% Similarity=0.137 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 605 KEEENDILHQRLQQYESRWSEYEQKMKSMEE 635 (793)
Q Consensus 605 ~e~e~~~L~~~l~~~e~~~~ele~k~~~~ee 635 (793)
+..++..|+.....+..++.++|..--.++.
T Consensus 93 Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr 123 (189)
T 2v71_A 93 LEDDLSQTRAIKEQLHKYVRELEQANDDLER 123 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 3333444444444444444444444333333
No 84
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=39.73 E-value=1.8e+02 Score=25.07 Aligned_cols=21 Identities=14% Similarity=0.110 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHhccc
Q 003820 637 WQKQMRSLQSSLSIAKKSLAI 657 (793)
Q Consensus 637 ~qkq~~~lq~~L~a~~~sla~ 657 (793)
.++.++.|+.+++..+..+..
T Consensus 73 ~~~~~e~Lq~E~erLr~~v~~ 93 (100)
T 1go4_E 73 LREDHSQLQAECERLRGLLRA 93 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 446667777777777766654
No 85
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=39.41 E-value=1.6e+02 Score=24.37 Aligned_cols=32 Identities=25% Similarity=0.377 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 598 AEAALREKEEENDILHQRLQQYESRWSEYEQK 629 (793)
Q Consensus 598 ~e~~l~~~e~e~~~L~~~l~~~e~~~~ele~k 629 (793)
++-++.+++++|..|.++.+........+...
T Consensus 25 LqmEieELKekN~~L~~e~~e~~~~~~~L~~e 56 (81)
T 2jee_A 25 LQMEIEELKEKNNSLSQEVQNAQHQREELERE 56 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 33444455555555555555544444444433
No 86
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=38.62 E-value=75 Score=34.63 Aligned_cols=43 Identities=14% Similarity=0.156 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 584 KASFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEY 626 (793)
Q Consensus 584 ~~~~l~~lq~r~~~~e~~l~~~e~e~~~L~~~l~~~e~~~~el 626 (793)
+...+..++++..+++..+.+++.++.++++++.+.+..+..+
T Consensus 8 ~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l 50 (403)
T 4etp_A 8 LKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTL 50 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555555555555554444444333
No 87
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=38.23 E-value=1.3e+02 Score=22.75 Aligned_cols=25 Identities=20% Similarity=0.251 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 598 AEAALREKEEENDILHQRLQQYESR 622 (793)
Q Consensus 598 ~e~~l~~~e~e~~~L~~~l~~~e~~ 622 (793)
+...+..+...|..|..-|+....+
T Consensus 14 l~~~l~~L~~rN~rL~~~L~~AR~e 38 (51)
T 3m91_A 14 LEARIDSLAARNSKLMETLKEARQQ 38 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444443333
No 88
>2h5n_A Hypothetical protein PG_1108; SAD, MCSG,PSI, structural genomics, PR structure initiative; 2.01A {Porphyromonas gingivalis} SCOP: a.287.1.2
Probab=38.18 E-value=17 Score=33.17 Aligned_cols=80 Identities=6% Similarity=0.117 Sum_probs=47.8
Q ss_pred cCCcccHHHHHHHHHHHhhcCCCHHHHHHHHHHHHH------HHHhcCeeE-----------EeeCCCCceeecCchHHH
Q 003820 17 INGVDDAEQFRIVVEALDIVHVSKEDQESVFAMLAA------VLWLGNVSF-----------TVIDNENHVEPVADEGLI 79 (793)
Q Consensus 17 ~~~~dD~~~f~~~~~Al~~lg~~~~~~~~if~ilaa------ILhLGNi~F-----------~~~~~~~~~~~~~~~~l~ 79 (793)
.||.=+..+-+.+...+..+|+++++...++...-. +-.+.++.. .....++.........+.
T Consensus 31 ADG~v~~~E~~~l~~~l~~lgl~~~e~~~l~~~~~~~~~~~~~~~~~~~~~e~r~~ll~~L~~IA~ADG~i~~~E~~lLr 110 (133)
T 2h5n_A 31 ADGKIKPAEIAVMTREFMRFGILQDQVDLLLKASDSIEASQAVALIARMDEERKKYVASYLGVIMASDGDIDDNELALWT 110 (133)
T ss_dssp TTSCCCHHHHHHHHHHHGGGTCCHHHHHHHHHHHTTSCHHHHHHHHHTSCHHHHHHHHHHHHHHSCBTTBCCHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHhccHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCCCCHHHHHHHH
Confidence 356555677777777777789998877777665420 111122210 000112233334456799
Q ss_pred HHHHHhCCCHHHHHHHH
Q 003820 80 TVAKLIGCDIGELKLAL 96 (793)
Q Consensus 80 ~~a~LLgv~~~~L~~~L 96 (793)
.+|.+||+++.++..+.
T Consensus 111 ~ia~~Lgls~~d~~~~~ 127 (133)
T 2h5n_A 111 LISTLCGLPTMTVMEAI 127 (133)
T ss_dssp HHHHHHTCCCCCHHHHH
T ss_pred HHHHHcCCCHHHHHHHH
Confidence 99999999998885543
No 89
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=37.74 E-value=2.6e+02 Score=26.14 Aligned_cols=51 Identities=18% Similarity=0.205 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 588 LAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQ 638 (793)
Q Consensus 588 l~~lq~r~~~~e~~l~~~e~e~~~L~~~l~~~e~~~~ele~k~~~~ee~~q 638 (793)
+..|..++.+++.+....+..+..|+..+..++..+.....+...+.+++.
T Consensus 79 Ik~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd 129 (155)
T 2efr_A 79 IKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMK 129 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444455555555555555555555555555555555555555555443
No 90
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=37.03 E-value=96 Score=25.57 Aligned_cols=31 Identities=23% Similarity=0.350 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 596 LKAEAALREKEEENDILHQRLQQYESRWSEY 626 (793)
Q Consensus 596 ~~~e~~l~~~e~e~~~L~~~l~~~e~~~~el 626 (793)
.+++.++..++.||..|+.+++.++.+...+
T Consensus 39 ~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~L 69 (78)
T 1gu4_A 39 LETQHKVLELTAENERLQKKVEQLSRELSTL 69 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666666666655554433
No 91
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=36.87 E-value=2.3e+02 Score=25.33 Aligned_cols=20 Identities=10% Similarity=0.302 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 003820 622 RWSEYEQKMKSMEEVWQKQM 641 (793)
Q Consensus 622 ~~~ele~k~~~~ee~~qkq~ 641 (793)
.+..+|..+..+...+..+.
T Consensus 83 ~i~~lE~eL~~~r~e~~~ql 102 (129)
T 3tnu_B 83 KLAELEEALQKAKQDMARLL 102 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHH
Confidence 33334433333333333333
No 92
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=36.53 E-value=90 Score=25.73 Aligned_cols=37 Identities=11% Similarity=0.310 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 581 VLVKASFLAELQRRVLKAEAALREKEEENDILHQRLQ 617 (793)
Q Consensus 581 ~~~~~~~l~~lq~r~~~~e~~l~~~e~e~~~L~~~l~ 617 (793)
+.....++..|+.+..+++.++..+..++..|+.++.
T Consensus 42 L~~Ai~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~ 78 (83)
T 1nkp_B 42 LDKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVR 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556666666666666666556555555555554
No 93
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=35.33 E-value=2.3e+02 Score=24.77 Aligned_cols=51 Identities=16% Similarity=0.227 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 589 AELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQK 639 (793)
Q Consensus 589 ~~lq~r~~~~e~~l~~~e~e~~~L~~~l~~~e~~~~ele~k~~~~ee~~qk 639 (793)
..++..+.....++.++.+++..|+..++.+++++.-|=.|+...|-..|.
T Consensus 7 ~al~~eL~~~~~ei~~L~~ei~eLk~~ve~lEkERDFYF~KLRdIEiLcQe 57 (106)
T 4e61_A 7 VAIQAELTKSQETIGSLNEEIEQYKGTVSTLEIEREFYFNKLRDIEILVHT 57 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666677777777888888888888888888888887777766644
No 94
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=35.25 E-value=57 Score=25.48 Aligned_cols=28 Identities=11% Similarity=0.139 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 596 LKAEAALREKEEENDILHQRLQQYESRW 623 (793)
Q Consensus 596 ~~~e~~l~~~e~e~~~L~~~l~~~e~~~ 623 (793)
..++.++..++.+|..|..++..++.+.
T Consensus 25 ~~Le~~v~~L~~~n~~L~~~v~~L~~e~ 52 (62)
T 1jnm_A 25 ARLEEKVKTLKAQNSELASTANMLREQV 52 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555555554444444443
No 95
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=34.10 E-value=2.1e+02 Score=23.93 Aligned_cols=36 Identities=19% Similarity=0.208 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 602 LREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVW 637 (793)
Q Consensus 602 l~~~e~e~~~L~~~l~~~e~~~~ele~k~~~~ee~~ 637 (793)
-...|.+...|++.+....-.+.++|.++.++.+++
T Consensus 44 R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl 79 (86)
T 3swk_A 44 REEAENTLQSFRQDVDNASLARLDLERKVESLQEEI 79 (86)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777777777777777777777766654
No 96
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=34.07 E-value=92 Score=20.35 Aligned_cols=23 Identities=30% Similarity=0.351 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 003820 597 KAEAALREKEEENDILHQRLQQY 619 (793)
Q Consensus 597 ~~e~~l~~~e~e~~~L~~~l~~~ 619 (793)
++++++.+.+.||-.|.++..++
T Consensus 5 qlekevaqaeaenyqleqevaql 27 (33)
T 1fmh_A 5 QLEKEVAQAEAENYQLEQEVAQL 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHH
Confidence 34444444444444444444443
No 97
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=33.79 E-value=72 Score=23.23 Aligned_cols=30 Identities=17% Similarity=0.228 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 588 LAELQRRVLKAEAALREKEEENDILHQRLQ 617 (793)
Q Consensus 588 l~~lq~r~~~~e~~l~~~e~e~~~L~~~l~ 617 (793)
+.++..+-..+++++..+|.+++.|++.++
T Consensus 11 vsel~~r~e~LE~Ri~~LE~KLd~L~~~l~ 40 (43)
T 2pnv_A 11 ISDLNERSEDFEKRIVTLETKLETLIGSIH 40 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555555443
No 98
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=33.67 E-value=5.5e+02 Score=35.65 Aligned_cols=72 Identities=11% Similarity=0.106 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 003820 584 KASFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSLSIAKKSL 655 (793)
Q Consensus 584 ~~~~l~~lq~r~~~~e~~l~~~e~e~~~L~~~l~~~e~~~~ele~k~~~~ee~~qkq~~~lq~~L~a~~~sl 655 (793)
....+.+++.++...+..|.++.++.+++-+++...+++..+-++.+...+++.+++..+.+..-+.+.+.|
T Consensus 1932 t~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~~~~~ae~~k~~v~~~~~~~~~~~~ei~~~k~~~e~dL 2003 (3245)
T 3vkg_A 1932 TEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQAAEIKQKDARELQVQLDVRNKEIAVQKVKAYADL 2003 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555554444444333333333333444444444444443334444444
No 99
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=33.60 E-value=35 Score=29.31 Aligned_cols=14 Identities=29% Similarity=0.216 Sum_probs=6.5
Q ss_pred HHHHHHHHHHhccc
Q 003820 644 LQSSLSIAKKSLAI 657 (793)
Q Consensus 644 lq~~L~a~~~sla~ 657 (793)
|..+++.-++-|..
T Consensus 77 Le~EIatYrkLLEG 90 (95)
T 3mov_A 77 LDMEISAYRKLLEG 90 (95)
T ss_dssp HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHcc
Confidence 34444555554443
No 100
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=33.55 E-value=36 Score=21.46 Aligned_cols=21 Identities=19% Similarity=0.240 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 003820 604 EKEEENDILHQRLQQYESRWS 624 (793)
Q Consensus 604 ~~e~e~~~L~~~l~~~e~~~~ 624 (793)
.+.++|+.|++++..++-++.
T Consensus 4 rlkqknarlkqeiaaleyeia 24 (28)
T 3ra3_B 4 RLKQKNARLKQEIAALEYEIA 24 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHHH
Confidence 344555666666655554443
No 101
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=33.24 E-value=1.2e+02 Score=25.05 Aligned_cols=24 Identities=25% Similarity=0.302 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 594 RVLKAEAALREKEEENDILHQRLQ 617 (793)
Q Consensus 594 r~~~~e~~l~~~e~e~~~L~~~l~ 617 (793)
|+.++|.++.=.+.-+++|-+.+.
T Consensus 15 Ri~~LE~klAfqE~tIeeLn~~v~ 38 (78)
T 3efg_A 15 RLVELETRLSFQEQALTELSEALA 38 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444333333333333333
No 102
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=33.19 E-value=40 Score=25.68 Aligned_cols=21 Identities=19% Similarity=0.237 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 003820 595 VLKAEAALREKEEENDILHQR 615 (793)
Q Consensus 595 ~~~~e~~l~~~e~e~~~L~~~ 615 (793)
..+++.++..+.+++++|..+
T Consensus 28 ~~eLk~k~~~L~~~~~el~~~ 48 (53)
T 2yy0_A 28 LAEMKEKYEAIVEENKKLKAK 48 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 103
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=32.56 E-value=1.6e+02 Score=22.79 Aligned_cols=16 Identities=6% Similarity=0.156 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 003820 614 QRLQQYESRWSEYEQK 629 (793)
Q Consensus 614 ~~l~~~e~~~~ele~k 629 (793)
.+...++.+..++...
T Consensus 29 ~~~~~L~~~n~~L~~~ 44 (61)
T 1t2k_D 29 KKAEDLSSLNGQLQSE 44 (61)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 104
>3dvk_B Voltage-dependent R-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.30A {Rattus norvegicus} PDB: 3dvm_B
Probab=32.49 E-value=18 Score=22.75 Aligned_cols=16 Identities=25% Similarity=0.227 Sum_probs=12.2
Q ss_pred HHHHHHHHHhhhHHHH
Q 003820 521 RAAVVIQRQIKSRVAR 536 (793)
Q Consensus 521 ~AAi~IQ~~~R~~~~R 536 (793)
-|+..||.+||.+..|
T Consensus 7 YA~llI~d~~r~~k~r 22 (23)
T 3dvk_B 7 YAAMMIMDYYKQSKVK 22 (26)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcc
Confidence 3788888888877654
No 105
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=32.46 E-value=2e+02 Score=24.12 Aligned_cols=39 Identities=13% Similarity=0.168 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 581 VLVKASFLAELQRRVLKAEAALREKEEENDILHQRLQQY 619 (793)
Q Consensus 581 ~~~~~~~l~~lq~r~~~~e~~l~~~e~e~~~L~~~l~~~ 619 (793)
+.....++..|+.+...+..+...+..++..|+.+++++
T Consensus 47 L~~A~~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L 85 (88)
T 1nkp_A 47 LKKATAYILSVQAEEQKLISEEDLLRKRREQLKHKLEQL 85 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444456676777666666666666666666666665544
No 106
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=32.21 E-value=2e+02 Score=24.69 Aligned_cols=29 Identities=24% Similarity=0.182 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 588 LAELQRRVLKAEAALREKEEENDILHQRL 616 (793)
Q Consensus 588 l~~lq~r~~~~e~~l~~~e~e~~~L~~~l 616 (793)
+.+-+.+...++.....++.|++.|.-.|
T Consensus 35 l~eE~~~R~~aE~~~~~ie~ElEeLTasL 63 (97)
T 2eqb_B 35 IAKENELRTKAEEEADKLNKEVEDLTASL 63 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444555555554444
No 107
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=32.13 E-value=2.6e+02 Score=24.50 Aligned_cols=21 Identities=29% Similarity=0.422 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 003820 628 QKMKSMEEVWQKQMRSLQSSL 648 (793)
Q Consensus 628 ~k~~~~ee~~qkq~~~lq~~L 648 (793)
+++.+..+.++.+.+.|+.++
T Consensus 86 Ekl~~eKe~L~~ql~~Lq~q~ 106 (110)
T 2v4h_A 86 EKLVEKKEYLQEQLEQLQREF 106 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHH
Confidence 445555555666666666554
No 108
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=31.87 E-value=53 Score=27.58 Aligned_cols=13 Identities=23% Similarity=0.286 Sum_probs=5.9
Q ss_pred HHHHHHHHHHhcc
Q 003820 644 LQSSLSIAKKSLA 656 (793)
Q Consensus 644 lq~~L~a~~~sla 656 (793)
|..++++-++-|.
T Consensus 68 Le~EIatYRkLLE 80 (86)
T 1x8y_A 68 LDMEIHAYRKLLE 80 (86)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHc
Confidence 3444444444443
No 109
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=31.73 E-value=2.1e+02 Score=23.39 Aligned_cols=60 Identities=23% Similarity=0.307 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 590 ELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSLSIAKK 653 (793)
Q Consensus 590 ~lq~r~~~~e~~l~~~e~e~~~L~~~l~~~e~~~~ele~k~~~~ee~~qkq~~~lq~~L~a~~~ 653 (793)
....++..++..+...+.....+..++..+..++..+|.-+...++.+ .+.+..|..+.+
T Consensus 17 ~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l----~~a~~kLeeaek 76 (81)
T 1ic2_A 17 NALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESL----KDAQEKLELADK 76 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 334445555555555555555555555555555555555544444444 334444444433
No 110
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=31.35 E-value=1.2e+02 Score=24.95 Aligned_cols=38 Identities=16% Similarity=0.166 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 580 EVLVKASFLAELQRRVLKAEAALREKEEENDILHQRLQ 617 (793)
Q Consensus 580 e~~~~~~~l~~lq~r~~~~e~~l~~~e~e~~~L~~~l~ 617 (793)
.+.....++..|+.+..++..+...+..++..|+.+|+
T Consensus 41 iL~kA~~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~L~ 78 (80)
T 1nlw_A 41 LLTKAKLHIKKLEDSDRKAVHQIDQLQREQRHLKRQLE 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444556666666665666555555555555555544
No 111
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=30.76 E-value=2.5e+02 Score=23.91 Aligned_cols=37 Identities=16% Similarity=0.239 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 586 SFLAELQRRVLKAEAALREKEEENDILHQRLQQYESR 622 (793)
Q Consensus 586 ~~l~~lq~r~~~~e~~l~~~e~e~~~L~~~l~~~e~~ 622 (793)
..+..+...-..+..+|..++.+.+.+..++..++.+
T Consensus 11 ~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E 47 (96)
T 3q8t_A 11 RELKELALEEERLIQELEDVEKNRKVVAENLEKVQAE 47 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3344444444444444455555444444444444333
No 112
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=30.28 E-value=2e+02 Score=22.51 Aligned_cols=28 Identities=11% Similarity=0.241 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 609 NDILHQRLQQYESRWSEYEQKMKSMEEV 636 (793)
Q Consensus 609 ~~~L~~~l~~~e~~~~ele~k~~~~ee~ 636 (793)
...|..+.+.++.+..+|+.++..++.+
T Consensus 25 ~~~le~~~~~L~~~N~~L~~~i~~L~~E 52 (63)
T 1ci6_A 25 QEALTGECKELEKKNEALKERADSLAKE 52 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444433
No 113
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=29.90 E-value=5.5e+02 Score=29.22 Aligned_cols=15 Identities=27% Similarity=0.530 Sum_probs=11.8
Q ss_pred cceeEEeecCCCccC
Q 003820 152 GRSISILDIYGFESF 166 (793)
Q Consensus 152 ~~~IgILDI~GFE~f 166 (793)
+..|-|+|++||-..
T Consensus 90 ~~~i~LiDTpGi~~~ 104 (592)
T 1f5n_A 90 GHILVLLDTEGLGDV 104 (592)
T ss_dssp TCEEEEEEECCBCCG
T ss_pred CceEEEecCCCcCcc
Confidence 346889999999654
No 114
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=29.55 E-value=1.4e+02 Score=32.61 Aligned_cols=55 Identities=5% Similarity=0.079 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 003820 597 KAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSLSIAKKSL 655 (793)
Q Consensus 597 ~~e~~l~~~e~e~~~L~~~l~~~e~~~~ele~k~~~~ee~~qkq~~~lq~~L~a~~~sl 655 (793)
.++.++.++.+++.+|++++++++.+..++++++...+.+. ..|...+...+...
T Consensus 7 ~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~r----r~l~n~~~~l~gnI 61 (412)
T 3u06_A 7 ALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMER----KELHNTVMDLRDNI 61 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHTCSE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhCCCE
Confidence 34455555555555555555555555555555554433332 44555555554443
No 115
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=29.38 E-value=1.3e+02 Score=31.58 Aligned_cols=40 Identities=10% Similarity=0.042 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 595 VLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSME 634 (793)
Q Consensus 595 ~~~~e~~l~~~e~e~~~L~~~l~~~e~~~~ele~k~~~~e 634 (793)
+.+++..+...+.++..|+..+...+.++.+++.++..++
T Consensus 14 ~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~ 53 (323)
T 1lwu_C 14 VRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIR 53 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444443333
No 116
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=29.33 E-value=2.7e+02 Score=23.79 Aligned_cols=41 Identities=24% Similarity=0.345 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 594 RVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSME 634 (793)
Q Consensus 594 r~~~~e~~l~~~e~e~~~L~~~l~~~e~~~~ele~k~~~~e 634 (793)
.+..++.+...+++++..|+..++.++.....++.++....
T Consensus 31 ~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~ 71 (101)
T 3u59_A 31 DKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQ 71 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444555555555555555555555555444433
No 117
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=29.08 E-value=1.6e+02 Score=24.19 Aligned_cols=14 Identities=7% Similarity=-0.071 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHhc
Q 003820 642 RSLQSSLSIAKKSL 655 (793)
Q Consensus 642 ~~lq~~L~a~~~sl 655 (793)
..|+..+......+
T Consensus 45 d~L~~ql~~L~~rl 58 (78)
T 3efg_A 45 ARNAELIRHLLEDL 58 (78)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHH
Confidence 33334444433333
No 118
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=28.41 E-value=2.8e+02 Score=23.69 Aligned_cols=41 Identities=20% Similarity=0.273 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 594 RVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSME 634 (793)
Q Consensus 594 r~~~~e~~l~~~e~e~~~L~~~l~~~e~~~~ele~k~~~~e 634 (793)
++..++..+...+.+...+..++..+..+..-++.-+...+
T Consensus 24 ~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~ 64 (101)
T 3u59_A 24 RAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYS 64 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444443333333
No 119
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=28.35 E-value=1.3e+02 Score=19.70 Aligned_cols=25 Identities=32% Similarity=0.368 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 590 ELQRRVLKAEAALREKEEENDILHQ 614 (793)
Q Consensus 590 ~lq~r~~~~e~~l~~~e~e~~~L~~ 614 (793)
.|++.+.+++++.-++++|++.|..
T Consensus 5 qlekevaqaeaenyqleqevaqleh 29 (33)
T 1fmh_A 5 QLEKEVAQAEAENYQLEQEVAQLEH 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3455555566666666666665543
No 120
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=27.88 E-value=1.6e+02 Score=20.82 Aligned_cols=23 Identities=26% Similarity=0.339 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 003820 595 VLKAEAALREKEEENDILHQRLQ 617 (793)
Q Consensus 595 ~~~~e~~l~~~e~e~~~L~~~l~ 617 (793)
+.+++.++.+++.|++-|+...-
T Consensus 5 vaqlenevaslenenetlkkknl 27 (49)
T 3he5_A 5 VAQLENEVASLENENETLKKKNL 27 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccHHHHHhcc
Confidence 34556666677777766655543
No 121
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=27.83 E-value=2e+02 Score=21.87 Aligned_cols=39 Identities=13% Similarity=0.301 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 595 VLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSM 633 (793)
Q Consensus 595 ~~~~e~~l~~~e~e~~~L~~~l~~~e~~~~ele~k~~~~ 633 (793)
+..+.-++.++..++..|++.+++.++-+.++|.-+..+
T Consensus 12 VYaLkDqV~eL~qe~k~m~k~lEeEqkARk~LE~~vrk~ 50 (56)
T 2w6b_A 12 VYALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKV 50 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666777777777777777666666655544
No 122
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=26.43 E-value=3.1e+02 Score=23.51 Aligned_cols=44 Identities=25% Similarity=0.246 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 593 RRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEV 636 (793)
Q Consensus 593 ~r~~~~e~~l~~~e~e~~~L~~~l~~~e~~~~ele~k~~~~ee~ 636 (793)
.++..++..+...+.+...+..++..+..++..++.-+...++.
T Consensus 23 drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~ 66 (101)
T 3u1c_A 23 DRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEE 66 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444443333
No 123
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=26.38 E-value=1.4e+02 Score=22.82 Aligned_cols=26 Identities=23% Similarity=0.263 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 595 VLKAEAALREKEEENDILHQRLQQYE 620 (793)
Q Consensus 595 ~~~~e~~l~~~e~e~~~L~~~l~~~e 620 (793)
+..++..+..++.+|..|..++..+.
T Consensus 24 ~~~LE~~v~~L~~eN~~L~~~~~~L~ 49 (55)
T 1dh3_A 24 VKSLENRVAVLENQNKTLIEELKALK 49 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555556666666666555543
No 124
>2ou3_A Tellurite resistance protein of COG3793; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE I3A; 1.85A {Nostoc punctiforme} SCOP: a.287.1.1
Probab=26.23 E-value=1.2e+02 Score=28.15 Aligned_cols=74 Identities=9% Similarity=0.043 Sum_probs=43.7
Q ss_pred cCCcccHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhcCeeEEe----------------------eCCCCceeecC
Q 003820 17 INGVDDAEQFRIVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTV----------------------IDNENHVEPVA 74 (793)
Q Consensus 17 ~~~~dD~~~f~~~~~Al~~lg~~~~~~~~if~ilaaILhLGNi~F~~----------------------~~~~~~~~~~~ 74 (793)
.||.=|..+-+.+..-|..+|+++++...+.. .-+...+.. .-.++......
T Consensus 42 ADG~v~~~E~~~i~~~~~~~~l~~~~~~~l~~------~~~~~~l~~~~~~i~~~~~~~~~~l~~l~~vA~ADG~~~~~E 115 (161)
T 2ou3_A 42 ADGVISPEEKDWALGFCASWGVADWVIEDLKT------YEADEALEEVIARSPQVSMAQRDILLSAIWVSAADGELHEKE 115 (161)
T ss_dssp SSSCCCHHHHHHHHHHHHHTTCCHHHHHHHHH------CCCCSCHHHHHTTCTTGGGCHHHHHHHHHHHHHTTSSCCHHH
T ss_pred hcCCCCHHHHHHHHHHHHHcCCCHHHHHHHhh------ccCCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCCHHH
Confidence 35555667777777777788888877655544 011111100 00011122233
Q ss_pred chHHHHHHHHhCCCHHHHHHHH
Q 003820 75 DEGLITVAKLIGCDIGELKLAL 96 (793)
Q Consensus 75 ~~~l~~~a~LLgv~~~~L~~~L 96 (793)
...+..+|.+||+++.++....
T Consensus 116 ~~~L~~iA~~Lgls~~~~~~l~ 137 (161)
T 2ou3_A 116 KAKIRKMATILGIKEEIVDQLE 137 (161)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHH
Confidence 4579999999999999887664
No 125
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=26.20 E-value=4e+02 Score=29.69 Aligned_cols=9 Identities=0% Similarity=-0.164 Sum_probs=3.7
Q ss_pred hhhhHHHHH
Q 003820 702 ISRLAEEFD 710 (793)
Q Consensus 702 v~~l~~e~~ 710 (793)
+.+.+.++-
T Consensus 225 L~~~~~d~~ 233 (501)
T 1wle_A 225 LVNFTLNKL 233 (501)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 334444433
No 126
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=25.92 E-value=2.9e+02 Score=23.01 Aligned_cols=38 Identities=21% Similarity=0.186 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 595 VLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKS 632 (793)
Q Consensus 595 ~~~~e~~l~~~e~e~~~L~~~l~~~e~~~~ele~k~~~ 632 (793)
...+..++..+...+..++.+++..-..+...|.-+..
T Consensus 16 ~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~ 53 (86)
T 3swk_A 16 KARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQS 53 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555555555555555555544443
No 127
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=25.89 E-value=1.6e+02 Score=30.99 Aligned_cols=36 Identities=14% Similarity=0.141 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 594 RVLKAEAALREKEEENDILHQRLQQYESRWSEYEQK 629 (793)
Q Consensus 594 r~~~~e~~l~~~e~e~~~L~~~l~~~e~~~~ele~k 629 (793)
.+...+..+..++..+..++.++++++.+..+++.+
T Consensus 20 ~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~~ 55 (323)
T 1lwu_C 20 IGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQT 55 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344444444444444444444444433
No 128
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=25.07 E-value=2e+02 Score=32.98 Aligned_cols=11 Identities=18% Similarity=0.301 Sum_probs=4.6
Q ss_pred HHHHHHHHHHH
Q 003820 343 KFKGQLFQLMQ 353 (793)
Q Consensus 343 ~f~~~L~~Lm~ 353 (793)
.|..+++.|..
T Consensus 261 eF~~~l~~l~~ 271 (592)
T 1f5n_A 261 EFVQQVADFCS 271 (592)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34444444443
No 129
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=25.06 E-value=2.2e+02 Score=21.43 Aligned_cols=9 Identities=33% Similarity=0.187 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 003820 609 NDILHQRLQ 617 (793)
Q Consensus 609 ~~~L~~~l~ 617 (793)
+..|..++.
T Consensus 18 l~~L~~rN~ 26 (51)
T 3m91_A 18 IDSLAARNS 26 (51)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 130
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=24.89 E-value=4.3e+02 Score=24.64 Aligned_cols=50 Identities=22% Similarity=0.241 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 581 VLVKASFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKM 630 (793)
Q Consensus 581 ~~~~~~~l~~lq~r~~~~e~~l~~~e~e~~~L~~~l~~~e~~~~ele~k~ 630 (793)
|..+...+.....|...++..+..++.++..|...|...+.....+...+
T Consensus 79 Ik~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eL 128 (155)
T 2efr_A 79 IKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEM 128 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444445555555555555555444444444443333333
No 131
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=24.49 E-value=1.6e+02 Score=23.08 Aligned_cols=20 Identities=20% Similarity=0.195 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 003820 597 KAEAALREKEEENDILHQRL 616 (793)
Q Consensus 597 ~~e~~l~~~e~e~~~L~~~l 616 (793)
.++.++..++.+|..|..++
T Consensus 34 ~Le~~v~~L~~eN~~L~~ev 53 (63)
T 2dgc_A 34 QLEDKVEELLSKNYHLENEV 53 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444443333
No 132
>4dck_A Sodium channel protein type 5 subunit alpha; IQ-motif, EF-hand, voltage-gated sodium channel regulation, CTD binds to FGF13 and CAM. CAM binds to Ca2+.; 2.20A {Homo sapiens} PDB: 2kbi_A
Probab=24.15 E-value=42 Score=31.99 Aligned_cols=21 Identities=29% Similarity=0.415 Sum_probs=18.0
Q ss_pred hHHHHHHHHHhhHHHHhhhhh
Q 003820 544 YSSIMIQSVIRGWLVRRCSGD 564 (793)
Q Consensus 544 ~aai~IQs~~Rg~~aRr~~~~ 564 (793)
.||++||.+||+|+.|+..+.
T Consensus 131 ~aA~~IQra~R~~~~r~~~~~ 151 (168)
T 4dck_A 131 VSAMVIQRAFRRHLLQRSLKH 151 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccccc
Confidence 599999999999998877653
No 133
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=24.12 E-value=1.4e+02 Score=29.80 Aligned_cols=44 Identities=18% Similarity=0.219 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 592 QRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEE 635 (793)
Q Consensus 592 q~r~~~~e~~l~~~e~e~~~L~~~l~~~e~~~~ele~k~~~~ee 635 (793)
-.|+.++|..+.++++.++++.+..+..+++...++..+..++.
T Consensus 5 nsRvd~~EErIs~le~rleei~q~eq~~ekrik~ne~sL~dL~d 48 (233)
T 2yko_A 5 RSRCDQLEERVSAAEDEINEIKREGKFREKRIKRNEQSLQEIWD 48 (233)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666666555555555555544444433
No 134
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=24.01 E-value=3.7e+02 Score=25.07 Aligned_cols=40 Identities=18% Similarity=0.267 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 586 SFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSE 625 (793)
Q Consensus 586 ~~l~~lq~r~~~~e~~l~~~e~e~~~L~~~l~~~e~~~~e 625 (793)
..+.+|..++.+....-...+.+...+..+++.+..-.-+
T Consensus 58 ~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasLFe 97 (154)
T 2ocy_A 58 DEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFD 97 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444555666666666666666655533
No 135
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=23.64 E-value=1.6e+02 Score=25.47 Aligned_cols=14 Identities=29% Similarity=0.290 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHhc
Q 003820 642 RSLQSSLSIAKKSL 655 (793)
Q Consensus 642 ~~lq~~L~a~~~sl 655 (793)
..|+..++..+..|
T Consensus 68 ~~L~~~~~~lk~~L 81 (103)
T 4h22_A 68 SILQFQFAEVKEAL 81 (103)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444443
No 136
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=23.58 E-value=4.9e+02 Score=28.85 Aligned_cols=6 Identities=17% Similarity=0.318 Sum_probs=2.7
Q ss_pred eeecCC
Q 003820 724 VEVKSG 729 (793)
Q Consensus 724 ~e~~~~ 729 (793)
.||-++
T Consensus 205 ~eV~~P 210 (485)
T 3qne_A 205 VPLQAP 210 (485)
T ss_dssp EEEECC
T ss_pred EEEeCC
Confidence 444443
No 137
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=23.27 E-value=2e+02 Score=23.44 Aligned_cols=44 Identities=16% Similarity=0.168 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 588 LAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMK 631 (793)
Q Consensus 588 l~~lq~r~~~~e~~l~~~e~e~~~L~~~l~~~e~~~~ele~k~~ 631 (793)
..+|=.++.++..+-..+..|+..+++..+.++.+..|+|+.++
T Consensus 32 k~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeElk 75 (77)
T 2w83_C 32 KNDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEELR 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444466666666666666666676666666666666666544
No 138
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=23.19 E-value=4.8e+02 Score=24.63 Aligned_cols=40 Identities=20% Similarity=0.302 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Q 003820 588 LAELQRRVLKAEAALRE-------KEEENDILHQRLQQYESRWSEYE 627 (793)
Q Consensus 588 l~~lq~r~~~~e~~l~~-------~e~e~~~L~~~l~~~e~~~~ele 627 (793)
..+++.++..+..++.. .+.++..|++.+..++++...++
T Consensus 92 ~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~e 138 (168)
T 3o0z_A 92 IGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLE 138 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34444444444444444 34444444444444444443333
No 139
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=22.92 E-value=7.4e+02 Score=26.72 Aligned_cols=19 Identities=32% Similarity=0.398 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 003820 600 AALREKEEENDILHQRLQQ 618 (793)
Q Consensus 600 ~~l~~~e~e~~~L~~~l~~ 618 (793)
+++.++|.|+.+|..+|+.
T Consensus 443 ~~~~~~~~~~~~~~~~~~~ 461 (471)
T 3mq9_A 443 KKVEELEGEITTLNHKLQD 461 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444443333333
No 140
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=22.73 E-value=2e+02 Score=19.96 Aligned_cols=19 Identities=32% Similarity=0.258 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 003820 599 EAALREKEEENDILHQRLQ 617 (793)
Q Consensus 599 e~~l~~~e~e~~~L~~~l~ 617 (793)
+.++.++..++..|+.+..
T Consensus 7 E~kVEeLl~~~~~Le~EV~ 25 (36)
T 1kd8_A 7 EAEVEEIESEVWHLENEVA 25 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHH
Confidence 3333333334334333333
No 141
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=22.42 E-value=3.9e+02 Score=29.85 Aligned_cols=85 Identities=12% Similarity=-0.046 Sum_probs=0.0
Q ss_pred HhhhhhhhhhHh-----HhhhcCChhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 559 RRCSGDICLLKS-----VESKGNDSDEVLVKASFLAELQRRVL-KAEAALREKEEENDILHQRLQQYESRWSEYEQKMKS 632 (793)
Q Consensus 559 Rr~~~~l~~~~~-----~~~~~~~~~e~~~~~~~l~~lq~r~~-~~e~~l~~~e~e~~~L~~~l~~~e~~~~ele~k~~~ 632 (793)
|..|..+....+ .............+.......-.++. +|+..+.-+++++......++.|+..+.++..+|+.
T Consensus 70 KnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQR 149 (562)
T 3ghg_A 70 KNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKR 149 (562)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHH
Q 003820 633 MEEVWQKQMRS 643 (793)
Q Consensus 633 ~ee~~qkq~~~ 643 (793)
+|-....|++.
T Consensus 150 LEvDIdiqirs 160 (562)
T 3ghg_A 150 LEVDIDIKIRS 160 (562)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
No 142
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=22.18 E-value=2e+02 Score=31.26 Aligned_cols=49 Identities=12% Similarity=0.112 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 583 VKASFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMK 631 (793)
Q Consensus 583 ~~~~~l~~lq~r~~~~e~~l~~~e~e~~~L~~~l~~~e~~~~ele~k~~ 631 (793)
.+..++.+++.+..++++...+...++..++++|.+.+.++..+...+.
T Consensus 7 ~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~ 55 (412)
T 3u06_A 7 ALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVM 55 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555566666666666666666666665555544444444433
No 143
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=21.77 E-value=1.8e+02 Score=26.54 Aligned_cols=23 Identities=26% Similarity=0.161 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 003820 594 RVLKAEAALREKEEENDILHQRL 616 (793)
Q Consensus 594 r~~~~e~~l~~~e~e~~~L~~~l 616 (793)
+...++.....++.|+++|.-.|
T Consensus 61 ~R~~aE~~~~~ie~ElE~LTasL 83 (135)
T 2e7s_A 61 LRTKAEEEADKLNKEVEDLTASL 83 (135)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444443
No 144
>3bxl_B CAM, voltage-dependent R-type calcium channel subunit alpha-1E peptide; ION channel, calmodulin, IQ domain, facillitation, inactivation; 2.30A {Rattus norvegicus} PDB: 3bxk_B
Probab=21.72 E-value=59 Score=20.89 Aligned_cols=18 Identities=22% Similarity=0.257 Sum_probs=14.0
Q ss_pred HHHHHHHHHhhhHHHHHH
Q 003820 521 RAAVVIQRQIKSRVARQK 538 (793)
Q Consensus 521 ~AAi~IQ~~~R~~~~R~~ 538 (793)
-||..|+.+||.+..|+.
T Consensus 3 YAa~mI~e~yrq~K~~r~ 20 (26)
T 3bxl_B 3 YAAMMIMDYYKQSKVKKQ 20 (26)
T ss_pred hHHHHHHHHHHHHHhhhh
Confidence 378889999988877654
No 145
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=21.64 E-value=5.9e+02 Score=28.19 Aligned_cols=21 Identities=29% Similarity=0.583 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 003820 614 QRLQQYESRWSEYEQKMKSME 634 (793)
Q Consensus 614 ~~l~~~e~~~~ele~k~~~~e 634 (793)
+.|..+++...+|+.+++.++
T Consensus 73 ~dlakY~~~~AeY~~kl~aYe 93 (497)
T 3iox_A 73 ADLAKYQKDLADYPVKLKAYE 93 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444433
No 146
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=21.34 E-value=2.2e+02 Score=20.47 Aligned_cols=22 Identities=23% Similarity=0.397 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 003820 614 QRLQQYESRWSEYEQKMKSMEE 635 (793)
Q Consensus 614 ~~l~~~e~~~~ele~k~~~~ee 635 (793)
.+++.-++++.++..+.+.+++
T Consensus 16 rEI~Kte~kI~~lqkKlkeLee 37 (42)
T 2l5g_B 16 REITMVEQQISKLKKKQQQLEE 37 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444443
No 147
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=20.71 E-value=8.2e+02 Score=27.04 Aligned_cols=38 Identities=16% Similarity=0.363 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 003820 616 LQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSLSIAKKSLAI 657 (793)
Q Consensus 616 l~~~e~~~~ele~k~~~~ee~~qkq~~~lq~~L~a~~~sla~ 657 (793)
|.++++.+..|+..+..++.+ ....+..+++..+.++.
T Consensus 68 l~kY~~dlakY~~~~AeY~~k----l~aYe~~~~~~~k~lae 105 (497)
T 3iox_A 68 LAKYQADLAKYQKDLADYPVK----LKAYEDEQTSIKAALAE 105 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 344444444444444444433 35556666666666664
No 148
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=20.39 E-value=4.2e+02 Score=22.85 Aligned_cols=16 Identities=13% Similarity=0.059 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 003820 632 SMEEVWQKQMRSLQSS 647 (793)
Q Consensus 632 ~~ee~~qkq~~~lq~~ 647 (793)
...+.++...+.|...
T Consensus 75 ~~~e~Lq~E~erLr~~ 90 (100)
T 1go4_E 75 EDHSQLQAECERLRGL 90 (100)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333444444444433
No 149
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=20.37 E-value=5.4e+02 Score=28.40 Aligned_cols=10 Identities=40% Similarity=0.531 Sum_probs=4.8
Q ss_pred CcchhhhhHH
Q 003820 698 GLSVISRLAE 707 (793)
Q Consensus 698 ~~~~v~~l~~ 707 (793)
|+..+.+|..
T Consensus 299 Gle~ih~LT~ 308 (464)
T 1m1j_B 299 GNDKISQLTK 308 (464)
T ss_dssp CHHHHHHHHT
T ss_pred cccceeeccC
Confidence 3444555554
No 150
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=20.21 E-value=3.6e+02 Score=22.13 Aligned_cols=34 Identities=9% Similarity=0.060 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 620 ESRWSEYEQKMKSMEEVWQKQMRSLQSSLSIAKK 653 (793)
Q Consensus 620 e~~~~ele~k~~~~ee~~qkq~~~lq~~L~a~~~ 653 (793)
...+.++-.++...+..+++.++.++...+...+
T Consensus 41 ~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~~ 74 (78)
T 3iv1_A 41 HQKLEEMVTRLDQEVAEVDKNIELLKKKDEELSS 74 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444455555555555544444333
Done!