Query 003821
Match_columns 793
No_of_seqs 595 out of 3682
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 05:11:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003821.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003821hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kg2_A Glutamate receptor 2; I 100.0 3.4E-87 1.2E-91 805.7 48.8 663 4-719 58-809 (823)
2 3o21_A Glutamate receptor 3; p 100.0 5.2E-39 1.8E-43 350.5 26.3 280 5-303 68-379 (389)
3 3hsy_A Glutamate receptor 2; l 100.0 4.8E-39 1.6E-43 349.6 21.8 282 5-303 59-373 (376)
4 3saj_A Glutamate receptor 1; r 100.0 1.2E-37 4.1E-42 339.7 23.7 279 4-302 65-375 (384)
5 3h6g_A Glutamate receptor, ion 100.0 4E-37 1.4E-41 337.2 26.7 284 4-303 69-382 (395)
6 4gpa_A Glutamate receptor 4; P 100.0 7.1E-37 2.4E-41 334.7 26.3 277 4-302 67-376 (389)
7 3om0_A Glutamate receptor, ion 100.0 7.5E-37 2.6E-41 334.7 24.2 283 4-304 68-381 (393)
8 1jdp_A NPR-C, atrial natriuret 100.0 3.9E-35 1.3E-39 326.3 29.2 279 5-300 83-397 (441)
9 4f11_A Gamma-aminobutyric acid 100.0 1.1E-35 3.8E-40 329.9 21.2 270 5-298 84-404 (433)
10 3qek_A NMDA glutamate receptor 100.0 7.9E-35 2.7E-39 317.6 23.7 265 1-297 61-369 (384)
11 1dp4_A Atrial natriuretic pept 100.0 3.4E-34 1.2E-38 318.3 24.8 282 3-300 74-399 (435)
12 2e4u_A Metabotropic glutamate 100.0 3.2E-33 1.1E-37 319.1 32.0 281 4-297 115-464 (555)
13 3sm9_A Mglur3, metabotropic gl 100.0 2.2E-33 7.5E-38 313.5 29.5 278 5-296 115-462 (479)
14 3qel_B Glutamate [NMDA] recept 100.0 1.2E-34 4.1E-39 311.8 16.1 262 3-297 60-351 (364)
15 3ks9_A Mglur1, metabotropic gl 100.0 8.1E-33 2.8E-37 310.3 28.8 282 3-296 125-474 (496)
16 3mq4_A Mglur7, metabotropic gl 100.0 2.2E-32 7.4E-37 306.3 18.6 282 5-296 116-467 (481)
17 3td9_A Branched chain amino ac 100.0 2.4E-29 8.2E-34 272.5 24.2 270 2-299 77-364 (366)
18 3i45_A Twin-arginine transloca 100.0 1.9E-29 6.7E-34 275.3 22.2 277 2-301 69-363 (387)
19 4f06_A Extracellular ligand-bi 100.0 2.2E-29 7.4E-34 273.0 21.3 270 1-289 67-352 (371)
20 3ipc_A ABC transporter, substr 100.0 5.3E-29 1.8E-33 268.7 20.9 269 5-299 68-353 (356)
21 4evq_A Putative ABC transporte 100.0 6.5E-28 2.2E-32 262.1 26.6 274 1-298 77-364 (375)
22 3i09_A Periplasmic branched-ch 100.0 3.3E-28 1.1E-32 264.4 22.5 263 2-288 67-342 (375)
23 3n0w_A ABC branched chain amin 100.0 2.3E-28 7.9E-33 266.0 20.5 264 2-288 69-346 (379)
24 3hut_A Putative branched-chain 100.0 4.4E-28 1.5E-32 261.6 22.4 271 2-298 68-354 (358)
25 3h5l_A Putative branched-chain 100.0 1.6E-28 5.5E-33 271.0 17.6 265 1-289 78-388 (419)
26 4eyg_A Twin-arginine transloca 100.0 7.8E-28 2.7E-32 260.8 21.8 269 2-293 68-353 (368)
27 1usg_A Leucine-specific bindin 100.0 1.2E-27 4.1E-32 256.9 21.3 264 4-292 67-345 (346)
28 3lkb_A Probable branched-chain 99.9 1.7E-27 6E-32 260.3 16.4 278 2-303 71-380 (392)
29 3lop_A Substrate binding perip 99.9 1.6E-26 5.5E-31 250.0 21.1 265 2-290 69-354 (364)
30 3eaf_A ABC transporter, substr 99.9 2.5E-26 8.7E-31 250.9 22.2 269 2-299 72-373 (391)
31 3n0x_A Possible substrate bind 99.9 5.9E-27 2E-31 254.3 16.6 263 1-287 68-347 (374)
32 4gnr_A ABC transporter substra 99.9 8.3E-26 2.9E-30 243.3 24.6 263 1-295 70-351 (353)
33 3sg0_A Extracellular ligand-bi 99.9 4.6E-26 1.6E-30 248.5 17.8 269 2-292 85-385 (386)
34 3snr_A Extracellular ligand-bi 99.9 2.6E-25 8.8E-30 240.3 20.0 267 2-292 65-361 (362)
35 1pea_A Amidase operon; gene re 99.9 2.2E-24 7.4E-29 235.1 22.5 272 3-295 72-357 (385)
36 1yae_A Glutamate receptor, ion 99.9 5.7E-24 2E-28 224.5 14.8 244 344-677 10-294 (312)
37 1pb7_A N-methyl-D-aspartate re 99.9 5.5E-23 1.9E-27 214.5 13.4 215 347-676 41-292 (292)
38 4h5g_A Amino acid ABC superfam 99.9 1.9E-22 6.4E-27 204.6 13.5 213 347-671 12-239 (243)
39 2a5s_A N-methyl-D-aspartate re 99.9 5.1E-23 1.7E-27 214.0 7.0 221 343-675 25-283 (284)
40 3g3k_A Glutamate receptor, ion 99.9 6.4E-22 2.2E-26 202.8 14.8 218 346-675 3-258 (259)
41 2rc8_A Glutamate [NMDA] recept 99.9 6.3E-22 2.1E-26 206.8 13.7 192 375-675 67-293 (294)
42 4gvo_A LMO2349 protein; struct 99.9 4.6E-22 1.6E-26 201.8 11.9 211 346-670 8-236 (243)
43 2h4a_A YRAM (HI1655); perplasm 99.9 1.9E-21 6.4E-26 204.3 15.5 246 4-292 54-317 (325)
44 3ckm_A YRAM (HI1655), LPOA; pe 99.9 4.2E-21 1.4E-25 203.8 17.0 250 2-294 54-321 (327)
45 3kzg_A Arginine 3RD transport 99.8 4.3E-21 1.5E-25 193.7 14.5 212 347-675 3-236 (237)
46 3k4u_A Binding component of AB 99.8 8.2E-21 2.8E-25 192.7 15.0 216 346-674 4-233 (245)
47 4f3p_A Glutamine-binding perip 99.8 2.3E-20 7.9E-25 189.9 16.9 210 345-671 22-244 (249)
48 2v3u_A Glutamate receptor delt 99.8 2.7E-20 9.1E-25 191.3 17.2 220 345-675 1-264 (265)
49 1mqi_A Glutamate receptor 2; G 99.8 6E-20 2.1E-24 188.5 16.5 216 346-675 3-262 (263)
50 3i6v_A Periplasmic His/Glu/Gln 99.8 3.9E-20 1.3E-24 186.1 13.9 206 346-675 4-223 (232)
51 3kbr_A Cyclohexadienyl dehydra 99.8 3.4E-20 1.2E-24 187.3 12.7 210 346-670 14-238 (239)
52 3del_B Arginine binding protei 99.8 7E-20 2.4E-24 185.4 14.2 206 346-671 10-234 (242)
53 3hv1_A Polar amino acid ABC up 99.8 1.9E-19 6.3E-24 185.4 15.3 211 346-671 20-250 (268)
54 3tql_A Arginine-binding protei 99.8 1.6E-19 5.6E-24 180.5 14.2 206 347-668 2-227 (227)
55 1wdn_A GLNBP, glutamine bindin 99.8 3.6E-19 1.2E-23 177.8 16.0 208 347-671 3-224 (226)
56 3h7m_A Sensor protein; histidi 99.8 3.3E-19 1.1E-23 179.2 15.6 210 345-671 9-232 (234)
57 1ii5_A SLR1257 protein; membra 99.8 4.9E-19 1.7E-23 177.8 16.4 208 346-671 3-228 (233)
58 4dz1_A DALS D-alanine transpor 99.8 5.9E-19 2E-23 180.7 15.9 212 346-671 28-255 (259)
59 4eq9_A ABC transporter substra 99.8 4.5E-19 1.5E-23 179.8 13.5 211 346-671 7-237 (246)
60 3mpk_A Virulence sensor protei 99.8 5.9E-19 2E-23 181.5 14.3 207 346-670 31-253 (267)
61 2y7i_A STM4351; arginine-bindi 99.8 1.3E-18 4.4E-23 174.3 15.5 205 346-669 5-228 (229)
62 1lst_A Lysine, arginine, ornit 99.8 8.3E-19 2.9E-23 177.0 13.7 212 346-671 3-234 (239)
63 2iee_A ORF2, probable ABC tran 99.8 1.2E-18 4.1E-23 179.7 11.4 210 345-669 19-246 (271)
64 2q88_A EHUB, putative ABC tran 99.8 5.2E-18 1.8E-22 173.3 14.1 211 346-669 12-240 (257)
65 2pvu_A ARTJ; basic amino acid 99.7 1E-17 3.6E-22 172.7 16.2 210 345-671 40-264 (272)
66 4i62_A Amino acid ABC transpor 99.7 8.6E-18 2.9E-22 172.8 13.4 209 346-670 38-265 (269)
67 2pyy_A Ionotropic glutamate re 99.7 7.5E-18 2.6E-22 168.4 12.6 208 347-671 3-224 (228)
68 3qax_A Probable ABC transporte 99.7 1.4E-17 4.9E-22 171.0 14.4 207 346-671 30-255 (268)
69 2yln_A Putative ABC transporte 99.7 2.8E-17 9.5E-22 170.5 14.8 207 346-671 56-279 (283)
70 1xt8_A Putative amino-acid tra 99.7 1.8E-17 6.3E-22 172.8 13.3 207 346-670 43-266 (292)
71 2yjp_A Putative ABC transporte 99.7 2.1E-17 7.3E-22 172.2 13.3 206 347-670 55-277 (291)
72 2vha_A Periplasmic binding tra 99.7 3.5E-17 1.2E-21 170.2 14.0 211 346-671 16-250 (287)
73 2v25_A Major cell-binding fact 99.6 2.4E-15 8.1E-20 153.4 7.6 203 346-668 37-258 (259)
74 3n5l_A Binding protein compone 98.2 2.8E-06 9.7E-11 88.2 9.4 123 545-667 103-241 (310)
75 2ozz_A Hypothetical protein YH 98.2 9E-07 3.1E-11 85.8 4.8 154 375-651 29-210 (231)
76 3p7i_A PHND, subunit of alkylp 98.1 9.8E-06 3.4E-10 84.4 11.9 123 545-667 113-250 (321)
77 2h3h_A Sugar ABC transporter, 97.1 0.0072 2.5E-07 62.4 14.8 144 5-165 56-206 (313)
78 2qpq_A Protein BUG27; alpha/be 96.8 0.01 3.5E-07 60.7 13.2 122 545-667 113-266 (301)
79 3brq_A HTH-type transcriptiona 96.8 0.0065 2.2E-07 62.0 11.7 155 4-175 75-234 (296)
80 2rjo_A Twin-arginine transloca 96.8 0.017 5.8E-07 60.2 15.1 150 7-166 64-222 (332)
81 2f5x_A BUGD; periplasmic bindi 96.8 0.013 4.4E-07 60.2 13.6 122 545-667 122-275 (312)
82 2h0a_A TTHA0807, transcription 96.8 0.0089 3E-07 60.3 12.5 155 4-175 53-214 (276)
83 1dbq_A Purine repressor; trans 96.8 0.012 4.1E-07 59.8 13.5 156 4-175 61-221 (289)
84 3c3k_A Alanine racemase; struc 96.8 0.021 7.2E-07 57.9 15.2 153 4-175 62-218 (285)
85 3ksm_A ABC-type sugar transpor 96.6 0.02 6.8E-07 57.6 13.8 144 7-165 60-211 (276)
86 2dvz_A BUGE, putative exported 96.6 0.013 4.5E-07 60.2 12.3 122 545-667 126-279 (314)
87 2iks_A DNA-binding transcripti 96.6 0.024 8.4E-07 57.7 14.0 156 4-175 74-231 (293)
88 2k1e_A Water soluble analogue 96.6 0.0016 5.3E-08 54.8 4.0 75 462-540 20-96 (103)
89 2ih3_C Voltage-gated potassium 96.6 0.0042 1.4E-07 53.9 6.8 74 463-540 42-117 (122)
90 3brs_A Periplasmic binding pro 96.6 0.03 1E-06 56.8 14.5 147 5-166 64-215 (289)
91 2qu7_A Putative transcriptiona 96.5 0.0054 1.9E-07 62.4 8.8 157 4-175 61-221 (288)
92 3l49_A ABC sugar (ribose) tran 96.5 0.023 8E-07 57.7 13.4 148 5-166 60-216 (291)
93 3g85_A Transcriptional regulat 96.5 0.028 9.6E-07 57.0 13.8 155 4-175 66-222 (289)
94 3k4h_A Putative transcriptiona 96.4 0.016 5.6E-07 58.9 11.7 158 4-175 67-226 (292)
95 2x7x_A Sensor protein; transfe 96.4 0.042 1.4E-06 56.9 15.0 147 4-165 60-212 (325)
96 3cs3_A Sugar-binding transcrip 96.4 0.048 1.6E-06 54.9 15.0 134 25-175 75-211 (277)
97 2fn9_A Ribose ABC transporter, 96.4 0.027 9.3E-07 57.2 13.2 147 5-165 57-215 (290)
98 3o74_A Fructose transport syst 96.4 0.015 5.3E-07 58.3 11.2 144 5-165 57-204 (272)
99 3d8u_A PURR transcriptional re 96.4 0.037 1.3E-06 55.6 14.0 138 24-175 76-215 (275)
100 3rot_A ABC sugar transporter, 96.4 0.012 3.9E-07 60.3 10.2 151 5-168 60-215 (297)
101 2x26_A Periplasmic aliphatic s 96.4 0.011 3.7E-07 60.9 9.8 121 545-669 96-232 (308)
102 3h75_A Periplasmic sugar-bindi 96.4 0.046 1.6E-06 57.3 14.8 162 5-175 61-239 (350)
103 3clk_A Transcription regulator 96.3 0.019 6.4E-07 58.4 11.3 154 4-175 63-219 (290)
104 3gv0_A Transcriptional regulat 96.3 0.026 9E-07 57.3 12.3 155 5-175 65-222 (288)
105 3bbl_A Regulatory protein of L 96.3 0.022 7.4E-07 57.9 11.5 157 4-175 62-222 (287)
106 2o20_A Catabolite control prot 96.3 0.023 8E-07 59.1 11.8 157 4-175 117-273 (332)
107 3g1w_A Sugar ABC transporter; 96.2 0.08 2.7E-06 54.1 15.5 148 5-166 60-212 (305)
108 3k9c_A Transcriptional regulat 96.2 0.08 2.7E-06 53.7 15.1 154 4-175 64-219 (289)
109 3hcw_A Maltose operon transcri 96.2 0.056 1.9E-06 55.0 13.9 156 4-175 66-226 (295)
110 2fvy_A D-galactose-binding per 96.2 0.076 2.6E-06 54.3 15.1 153 4-164 57-226 (309)
111 2fep_A Catabolite control prot 96.1 0.035 1.2E-06 56.3 12.2 157 4-175 70-229 (289)
112 2a9h_A Voltage-gated potassium 96.1 0.016 5.4E-07 52.5 8.3 76 463-542 65-142 (155)
113 3qk7_A Transcriptional regulat 96.1 0.025 8.5E-07 57.7 10.8 156 4-175 63-221 (294)
114 3gyb_A Transcriptional regulat 96.0 0.018 6E-07 58.2 9.4 151 4-175 58-210 (280)
115 2rgy_A Transcriptional regulat 96.0 0.026 8.9E-07 57.4 10.6 157 4-175 65-223 (290)
116 3dbi_A Sugar-binding transcrip 96.0 0.022 7.7E-07 59.4 10.4 157 5-175 118-276 (338)
117 2ioy_A Periplasmic sugar-bindi 96.0 0.08 2.7E-06 53.4 14.3 146 5-165 56-207 (283)
118 3d02_A Putative LACI-type tran 96.0 0.096 3.3E-06 53.3 15.0 149 5-166 60-214 (303)
119 1qpz_A PURA, protein (purine n 96.0 0.056 1.9E-06 56.4 13.3 158 4-175 112-272 (340)
120 3eff_K Voltage-gated potassium 96.0 0.018 6.2E-07 51.3 8.0 72 464-539 22-95 (139)
121 3uif_A Sulfonate ABC transport 96.0 0.015 5.2E-07 61.0 8.9 108 545-654 110-228 (348)
122 2hsg_A Glucose-resistance amyl 96.0 0.024 8.2E-07 59.0 10.2 150 4-168 114-266 (332)
123 3o1i_D Periplasmic protein TOR 95.9 0.018 6.1E-07 58.9 8.8 150 5-166 62-218 (304)
124 1tjy_A Sugar transport protein 95.9 0.088 3E-06 54.2 14.0 147 5-166 59-213 (316)
125 3egc_A Putative ribose operon 95.9 0.028 9.6E-07 57.1 10.0 157 4-175 62-220 (291)
126 3kke_A LACI family transcripti 95.9 0.056 1.9E-06 55.3 12.3 154 4-174 69-230 (303)
127 3l6u_A ABC-type sugar transpor 95.8 0.088 3E-06 53.3 13.4 147 5-166 63-220 (293)
128 2vk2_A YTFQ, ABC transporter p 95.7 0.1 3.5E-06 53.3 13.7 159 5-175 57-225 (306)
129 4h33_A LMO2059 protein; bilaye 95.7 0.033 1.1E-06 49.3 8.4 55 486-540 43-99 (137)
130 3qsl_A Putative exported prote 95.6 0.057 1.9E-06 56.3 11.5 70 545-617 129-205 (346)
131 3un6_A Hypothetical protein sa 95.6 0.01 3.5E-07 62.2 5.3 121 545-669 144-283 (341)
132 3ctp_A Periplasmic binding pro 95.5 0.028 9.6E-07 58.4 8.6 150 5-175 115-265 (330)
133 3ix1_A N-formyl-4-amino-5-amin 95.4 0.025 8.7E-07 57.9 7.4 64 375-438 16-96 (302)
134 3lft_A Uncharacterized protein 95.3 0.13 4.5E-06 52.2 12.4 142 4-165 60-210 (295)
135 3ksx_A Nitrate transport prote 95.2 0.079 2.7E-06 54.8 10.7 70 545-616 122-195 (324)
136 4fe7_A Xylose operon regulator 95.1 0.21 7.1E-06 53.6 14.1 160 4-175 74-237 (412)
137 2dri_A D-ribose-binding protei 95.1 0.34 1.1E-05 48.4 14.7 147 4-165 55-206 (271)
138 3m9w_A D-xylose-binding peripl 95.1 0.34 1.2E-05 49.5 15.1 148 5-166 57-213 (313)
139 3huu_A Transcription regulator 95.1 0.1 3.5E-06 53.3 10.9 152 4-175 81-236 (305)
140 3e3m_A Transcriptional regulat 95.0 0.24 8.3E-06 51.8 14.0 141 22-175 141-284 (355)
141 3e61_A Putative transcriptiona 95.0 0.091 3.1E-06 52.8 10.0 148 5-175 63-211 (277)
142 3ldc_A Calcium-gated potassium 94.9 0.099 3.4E-06 41.4 8.0 52 486-537 28-81 (82)
143 2qh8_A Uncharacterized protein 94.9 0.083 2.8E-06 54.0 9.7 141 4-164 67-216 (302)
144 3jvd_A Transcriptional regulat 94.8 0.19 6.4E-06 52.1 12.3 147 5-175 118-265 (333)
145 3jy6_A Transcriptional regulat 94.7 0.16 5.6E-06 50.8 11.3 153 4-175 61-215 (276)
146 3gbv_A Putative LACI-family tr 94.6 0.14 4.8E-06 52.1 10.6 148 4-165 67-223 (304)
147 3tb6_A Arabinose metabolism tr 94.6 0.081 2.8E-06 53.7 8.7 159 4-175 69-235 (298)
148 3bil_A Probable LACI-family tr 94.6 0.18 6E-06 52.7 11.4 154 5-175 121-275 (348)
149 1jx6_A LUXP protein; protein-l 94.4 0.15 5E-06 53.1 10.4 152 5-165 103-258 (342)
150 3kjx_A Transcriptional regulat 94.4 0.15 5E-06 53.2 10.4 139 21-175 138-281 (344)
151 3ouf_A Potassium channel prote 94.4 0.069 2.4E-06 43.9 6.0 56 486-541 32-89 (97)
152 1byk_A Protein (trehalose oper 94.4 0.37 1.3E-05 47.5 12.7 119 26-165 75-196 (255)
153 1jye_A Lactose operon represso 94.3 0.36 1.2E-05 50.3 13.0 152 5-175 117-272 (349)
154 3h5o_A Transcriptional regulat 94.1 0.38 1.3E-05 49.8 12.6 154 5-175 117-273 (339)
155 2q67_A Potassium channel prote 94.1 0.15 5E-06 43.4 7.5 54 486-539 49-104 (114)
156 3hs3_A Ribose operon repressor 94.0 0.2 6.8E-06 50.3 9.9 131 25-175 80-212 (277)
157 1gud_A ALBP, D-allose-binding 93.3 1.1 3.8E-05 44.9 14.3 153 4-166 57-218 (288)
158 8abp_A L-arabinose-binding pro 93.2 0.57 1.9E-05 47.5 12.0 162 5-175 56-230 (306)
159 2fqx_A Membrane lipoprotein TM 93.2 1 3.5E-05 46.1 14.0 156 4-175 60-221 (318)
160 1p7b_A Integral membrane chann 92.7 0.22 7.6E-06 51.0 7.6 60 483-542 93-154 (333)
161 3vou_A ION transport 2 domain 92.6 0.37 1.3E-05 43.1 8.3 53 486-538 52-106 (148)
162 1xl4_A Inward rectifier potass 92.3 0.39 1.3E-05 48.5 8.8 58 484-541 80-139 (301)
163 1orq_C Potassium channel; volt 92.3 0.3 1E-05 47.2 7.8 73 463-539 146-220 (223)
164 3h5t_A Transcriptional regulat 92.1 0.38 1.3E-05 50.5 9.0 136 24-174 145-301 (366)
165 3miz_A Putative transcriptiona 91.9 0.084 2.9E-06 53.8 3.5 142 23-175 85-231 (301)
166 3uug_A Multiple sugar-binding 91.8 0.93 3.2E-05 46.5 11.5 153 5-168 58-231 (330)
167 4gx0_A TRKA domain protein; me 91.7 0.41 1.4E-05 53.7 9.1 52 486-537 51-105 (565)
168 3ixl_A Amdase, arylmalonate de 91.5 1.1 3.7E-05 43.8 10.8 82 63-150 104-190 (240)
169 3pjs_K KCSA, voltage-gated pot 90.9 0.012 4.1E-07 54.2 -3.8 56 484-539 65-122 (166)
170 3qi7_A Putative transcriptiona 90.8 2.5 8.4E-05 43.7 13.0 154 3-168 84-252 (371)
171 4ddd_A Immunogenic protein; ss 89.3 0.37 1.3E-05 49.7 5.5 61 545-607 137-203 (327)
172 3beh_A MLL3241 protein; transm 89.2 0.42 1.4E-05 50.0 5.9 72 463-538 142-215 (355)
173 2qks_A KIR3.1-prokaryotic KIR 88.7 1.3 4.3E-05 45.2 8.8 57 486-542 78-136 (321)
174 2x7q_A Ca3427, possible thiami 88.7 1.8 6.1E-05 44.3 10.3 107 545-657 111-236 (321)
175 2hqb_A Transcriptional activat 88.3 13 0.00043 37.3 16.3 141 4-164 61-204 (296)
176 1lnq_A MTHK channels, potassiu 88.0 0.19 6.4E-06 52.2 2.2 125 486-614 45-171 (336)
177 3lkv_A Uncharacterized conserv 83.9 4.4 0.00015 40.9 10.1 144 4-165 67-221 (302)
178 2r9r_B Paddle chimera voltage 82.9 2 6.8E-05 47.2 7.3 56 484-539 373-430 (514)
179 3ukm_A Potassium channel subfa 80.9 2.2 7.4E-05 42.3 6.0 61 486-546 201-270 (280)
180 2g29_A Nitrate transport prote 80.4 2.3 7.9E-05 45.4 6.7 103 550-656 151-272 (417)
181 3bfj_A 1,3-propanediol oxidore 78.2 10 0.00035 39.8 10.7 89 66-160 23-114 (387)
182 2l82_A Designed protein OR32; 78.1 24 0.00082 28.3 10.0 98 53-165 4-104 (162)
183 3jv9_A OXYR, transcriptional r 75.2 24 0.00083 32.5 11.7 104 547-656 94-208 (219)
184 3s99_A Basic membrane lipoprot 74.6 36 0.0012 35.1 13.5 142 4-165 84-230 (356)
185 3oxn_A Putative transcriptiona 74.6 37 0.0012 32.0 13.1 106 546-656 107-217 (241)
186 3ox4_A Alcohol dehydrogenase 2 73.1 5.5 0.00019 41.8 6.9 92 64-161 19-111 (383)
187 2l69_A Rossmann 2X3 fold prote 71.7 22 0.00076 27.6 8.0 100 51-165 26-126 (134)
188 2xed_A Putative maleate isomer 68.4 19 0.00066 35.5 9.4 80 64-149 134-217 (273)
189 2nr1_A NR1 M2, M2; receptor, s 68.2 2 6.9E-05 24.9 1.1 17 486-502 8-24 (27)
190 3k6v_A Solute-binding protein 67.8 51 0.0018 33.8 12.7 86 581-667 222-329 (354)
191 3m9w_A D-xylose-binding peripl 65.4 14 0.00049 37.0 8.0 80 77-165 3-84 (313)
192 1rrm_A Lactaldehyde reductase; 65.4 10 0.00036 39.7 7.1 90 66-161 21-111 (386)
193 1us5_A Putative GLUR0 ligand b 64.7 8.7 0.0003 38.7 6.2 59 545-606 122-187 (314)
194 3um7_A Potassium channel subfa 64.2 6 0.00021 39.8 4.6 52 486-537 115-168 (309)
195 2dgd_A 223AA long hypothetical 63.8 23 0.00079 33.6 8.7 81 64-150 96-181 (223)
196 4ab5_A Transcriptional regulat 62.8 71 0.0024 29.2 12.1 105 547-656 98-207 (222)
197 3r26_A Molybdate-binding perip 62.3 25 0.00086 33.7 8.7 113 546-666 107-231 (237)
198 3g1w_A Sugar ABC transporter; 62.3 12 0.00041 37.4 6.7 81 77-165 5-87 (305)
199 3um7_A Potassium channel subfa 61.4 15 0.00052 36.8 7.0 53 486-538 224-284 (309)
200 3uhj_A Probable glycerol dehyd 61.2 15 0.00052 38.4 7.3 70 66-145 43-112 (387)
201 3l49_A ABC sugar (ribose) tran 60.4 24 0.00083 34.7 8.6 80 77-165 6-87 (291)
202 2xxp_A CPS2A; replication, pep 60.1 7.3 0.00025 40.9 4.6 69 542-615 24-98 (398)
203 3sya_A G protein-activated inw 59.8 23 0.0008 36.0 8.1 59 485-543 90-152 (340)
204 3gzg_A Molybdate-binding perip 59.6 30 0.001 33.6 8.8 92 545-641 119-224 (253)
205 1o2d_A Alcohol dehydrogenase, 58.8 1.1E+02 0.0039 31.4 13.6 101 51-160 19-120 (371)
206 8abp_A L-arabinose-binding pro 58.0 26 0.00089 34.8 8.4 79 77-165 3-83 (306)
207 1vlj_A NADH-dependent butanol 57.6 23 0.00077 37.4 8.0 90 66-160 33-123 (407)
208 1atg_A MODA, periplasmic molyb 57.1 34 0.0012 31.9 8.7 73 583-657 141-216 (231)
209 3umf_A Adenylate kinase; rossm 56.9 4 0.00014 38.9 1.7 35 3-37 27-61 (217)
210 3d02_A Putative LACI-type tran 55.8 26 0.00089 34.7 7.9 81 77-165 5-87 (303)
211 3ho7_A OXYR; beta-alpha-barrel 55.3 73 0.0025 29.4 10.8 77 579-656 136-212 (232)
212 2de3_A Dibenzothiophene desulf 55.2 12 0.00043 38.7 5.4 25 591-615 210-234 (365)
213 3rvy_A ION transport protein; 55.2 19 0.00064 35.8 6.5 59 484-542 178-244 (285)
214 2l69_A Rossmann 2X3 fold prote 54.4 74 0.0025 24.7 10.9 105 14-136 10-121 (134)
215 3l6u_A ABC-type sugar transpor 54.0 29 0.00099 34.2 7.9 81 76-165 8-90 (293)
216 3gbv_A Putative LACI-family tr 53.8 40 0.0014 33.2 9.0 85 75-165 7-95 (304)
217 3uug_A Multiple sugar-binding 51.7 30 0.001 34.8 7.7 80 77-165 4-85 (330)
218 2q5c_A NTRC family transcripti 51.3 1.4E+02 0.0049 27.4 11.5 131 7-166 31-162 (196)
219 1tjy_A Sugar transport protein 50.3 19 0.00064 36.3 5.7 81 77-165 4-86 (316)
220 1mkz_A Molybdenum cofactor bio 50.2 57 0.0019 29.5 8.4 63 77-145 11-75 (172)
221 3ukm_A Potassium channel subfa 48.0 16 0.00055 36.0 4.5 52 486-537 93-146 (280)
222 1zbm_A Hypothetical protein AF 47.9 12 0.00041 36.9 3.7 102 550-657 99-210 (280)
223 1jq5_A Glycerol dehydrogenase; 47.7 31 0.0011 35.7 7.1 84 66-158 22-106 (370)
224 3spc_A Inward-rectifier K+ cha 47.1 44 0.0015 34.0 7.6 59 485-543 93-155 (343)
225 3lte_A Response regulator; str 46.3 1.2E+02 0.0042 24.8 10.1 60 92-165 16-77 (132)
226 2fn9_A Ribose ABC transporter, 45.9 35 0.0012 33.5 6.9 80 77-165 3-84 (290)
227 3kto_A Response regulator rece 45.3 1E+02 0.0035 25.7 9.1 68 92-175 16-87 (136)
228 3ce9_A Glycerol dehydrogenase; 45.2 54 0.0018 33.6 8.4 96 51-158 12-108 (354)
229 3rot_A ABC sugar transporter, 44.1 29 0.001 34.3 6.0 82 77-165 4-87 (297)
230 2zsk_A PH1733, 226AA long hypo 43.7 45 0.0015 31.7 7.0 40 65-109 104-143 (226)
231 3gl9_A Response regulator; bet 43.4 1.3E+02 0.0045 24.4 9.8 58 93-164 13-72 (122)
232 2h3h_A Sugar ABC transporter, 43.0 34 0.0012 34.1 6.4 80 78-165 3-83 (313)
233 3h75_A Periplasmic sugar-bindi 43.0 35 0.0012 34.7 6.6 80 76-165 3-87 (350)
234 3ksm_A ABC-type sugar transpor 43.0 32 0.0011 33.4 6.0 81 78-165 2-85 (276)
235 3tb6_A Arabinose metabolism tr 43.0 62 0.0021 31.7 8.3 80 77-165 16-100 (298)
236 4esw_A Pyrimidine biosynthesis 42.7 31 0.0011 35.2 6.0 74 537-613 94-170 (342)
237 3lua_A Response regulator rece 42.5 1.5E+02 0.005 24.7 10.1 57 92-162 14-75 (140)
238 3hl0_A Maleylacetate reductase 42.2 24 0.00081 36.4 5.0 71 65-145 23-93 (353)
239 2fvy_A D-galactose-binding per 41.2 71 0.0024 31.4 8.5 80 77-165 3-85 (309)
240 3jy6_A Transcriptional regulat 41.2 55 0.0019 31.8 7.4 78 76-165 7-86 (276)
241 3o74_A Fructose transport syst 40.3 32 0.0011 33.3 5.5 79 77-165 3-83 (272)
242 3t6k_A Response regulator rece 40.2 65 0.0022 27.1 7.0 59 92-164 14-74 (136)
243 3sr0_A Adenylate kinase; phosp 40.1 10 0.00035 35.7 1.7 31 7-37 2-32 (206)
244 3p6l_A Sugar phosphate isomera 40.0 1.2E+02 0.0042 29.0 9.8 93 65-165 25-129 (262)
245 2l2t_A Receptor tyrosine-prote 39.8 39 0.0013 22.6 3.9 7 713-719 30-36 (44)
246 3gt7_A Sensor protein; structu 38.0 1.2E+02 0.0041 26.0 8.6 59 92-164 17-77 (154)
247 3kht_A Response regulator; PSI 37.9 1.8E+02 0.0061 24.3 10.6 72 92-175 15-88 (144)
248 3jzd_A Iron-containing alcohol 37.9 25 0.00085 36.3 4.3 83 65-158 25-109 (358)
249 3i42_A Response regulator rece 37.1 1.2E+02 0.0041 24.7 8.1 59 92-164 13-73 (127)
250 4dik_A Flavoprotein; TM0755, e 36.8 1.2E+02 0.004 31.8 9.4 90 76-175 265-360 (410)
251 2qr3_A Two-component system re 36.1 1.2E+02 0.0041 25.2 8.1 59 92-164 13-78 (140)
252 1jx6_A LUXP protein; protein-l 35.5 71 0.0024 32.2 7.5 83 77-165 44-129 (342)
253 2rjo_A Twin-arginine transloca 35.5 77 0.0026 31.8 7.7 80 77-165 6-89 (332)
254 1ta9_A Glycerol dehydrogenase; 35.5 61 0.0021 34.5 7.0 84 66-158 81-165 (450)
255 2ioy_A Periplasmic sugar-bindi 35.3 71 0.0024 31.1 7.2 80 77-165 2-83 (283)
256 2rjn_A Response regulator rece 34.6 95 0.0032 26.6 7.3 59 92-164 17-77 (154)
257 3fxq_A LYSR type regulator of 34.5 2.7E+02 0.0092 27.0 11.6 104 547-656 182-293 (305)
258 2is8_A Molybdopterin biosynthe 34.4 80 0.0027 28.1 6.6 62 78-145 3-68 (164)
259 3eod_A Protein HNR; response r 34.4 1.6E+02 0.0056 24.0 8.6 59 93-165 18-78 (130)
260 2x7x_A Sensor protein; transfe 34.2 1.1E+02 0.0039 30.4 8.7 81 76-165 6-88 (325)
261 3iwt_A 178AA long hypothetical 34.1 89 0.003 28.2 7.1 62 78-145 17-87 (178)
262 3cg4_A Response regulator rece 34.1 2E+02 0.0068 23.8 11.1 58 92-163 17-76 (142)
263 3hzh_A Chemotaxis response reg 34.1 1.7E+02 0.006 25.0 9.0 61 92-165 46-110 (157)
264 3rfq_A Pterin-4-alpha-carbinol 33.3 96 0.0033 28.3 7.0 63 77-145 31-95 (185)
265 3tsm_A IGPS, indole-3-glycerol 33.2 2.3E+02 0.0079 27.6 10.2 88 65-166 82-171 (272)
266 1y5e_A Molybdenum cofactor bio 33.0 1.4E+02 0.0048 26.7 8.1 66 74-145 11-78 (169)
267 2pjk_A 178AA long hypothetical 32.9 1.2E+02 0.0042 27.4 7.7 66 74-145 13-87 (178)
268 2qxy_A Response regulator; reg 32.8 1.8E+02 0.0062 24.1 8.8 60 92-165 14-74 (142)
269 3hdv_A Response regulator; PSI 32.6 2.1E+02 0.0071 23.5 9.6 58 93-164 18-78 (136)
270 3dbi_A Sugar-binding transcrip 32.2 99 0.0034 31.0 7.9 85 71-165 56-144 (338)
271 2dri_A D-ribose-binding protei 32.0 92 0.0031 30.0 7.3 80 77-165 2-83 (271)
272 3brq_A HTH-type transcriptiona 31.6 84 0.0029 30.6 7.1 80 75-165 18-102 (296)
273 3kke_A LACI family transcripti 30.9 91 0.0031 30.7 7.2 84 71-165 10-95 (303)
274 3grc_A Sensor protein, kinase; 30.8 1.2E+02 0.0043 25.2 7.3 58 92-163 16-75 (140)
275 3s99_A Basic membrane lipoprot 30.7 64 0.0022 33.1 6.0 76 76-162 26-107 (356)
276 4es6_A Uroporphyrinogen-III sy 30.3 48 0.0016 32.0 4.8 87 63-162 115-206 (254)
277 2rdm_A Response regulator rece 30.2 1.6E+02 0.0054 24.1 7.7 59 92-164 15-77 (132)
278 3brs_A Periplasmic binding pro 30.1 30 0.001 33.9 3.3 82 77-165 6-91 (289)
279 3a10_A Response regulator; pho 30.0 2E+02 0.0069 22.7 8.2 59 92-164 11-71 (116)
280 2zay_A Response regulator rece 29.7 1.5E+02 0.0052 24.9 7.7 57 93-163 19-77 (147)
281 3k4h_A Putative transcriptiona 29.4 56 0.0019 31.9 5.3 80 75-165 7-93 (292)
282 3c3m_A Response regulator rece 29.1 2.1E+02 0.007 23.7 8.4 59 92-164 13-73 (138)
283 3to5_A CHEY homolog; alpha(5)b 28.9 2.6E+02 0.0091 23.6 8.8 71 92-175 22-94 (134)
284 2eq5_A 228AA long hypothetical 28.8 49 0.0017 31.3 4.5 118 2-162 71-196 (228)
285 3hv2_A Response regulator/HD d 28.6 1.4E+02 0.0047 25.5 7.3 57 94-164 26-84 (153)
286 3zy2_A Putative GDP-fucose pro 28.3 2.7E+02 0.0094 28.1 9.7 88 57-164 261-348 (362)
287 3k9c_A Transcriptional regulat 28.2 1.5E+02 0.0051 28.8 8.2 81 71-165 7-89 (289)
288 2zzv_A ABC transporter, solute 28.1 56 0.0019 33.6 5.1 60 543-610 163-222 (361)
289 3huu_A Transcription regulator 28.0 43 0.0015 33.2 4.1 85 70-165 16-107 (305)
290 1xs5_A 29 kDa protein, membran 27.9 1.8E+02 0.0062 27.7 8.3 117 543-667 89-232 (241)
291 2bon_A Lipid kinase; DAG kinas 27.6 1.4E+02 0.0049 30.1 8.0 95 52-163 11-105 (332)
292 3f6p_A Transcriptional regulat 27.4 1.5E+02 0.0051 23.9 6.9 58 92-163 12-71 (120)
293 3cnb_A DNA-binding response re 27.3 2E+02 0.007 23.7 8.1 59 92-163 18-79 (143)
294 3lmz_A Putative sugar isomeras 27.3 1.7E+02 0.0057 28.0 8.2 96 64-165 32-127 (257)
295 2pju_A Propionate catabolism o 26.7 3.7E+02 0.013 25.2 10.2 109 32-166 66-174 (225)
296 3o1i_D Periplasmic protein TOR 26.5 56 0.0019 32.1 4.7 81 77-165 6-88 (304)
297 2hpg_A ABC transporter, peripl 26.5 78 0.0027 32.0 5.8 61 543-610 147-207 (327)
298 1q9u_A Uncharacterized protein 26.4 94 0.0032 26.3 5.4 70 92-175 16-87 (130)
299 2b4a_A BH3024; flavodoxin-like 26.3 1.2E+02 0.0041 25.2 6.3 58 92-163 25-85 (138)
300 2gkg_A Response regulator homo 26.1 95 0.0033 25.2 5.5 58 92-163 15-75 (127)
301 2vk2_A YTFQ, ABC transporter p 25.6 94 0.0032 30.6 6.2 79 77-165 3-84 (306)
302 3e61_A Putative transcriptiona 25.6 1.2E+02 0.0043 29.0 7.0 76 77-165 9-87 (277)
303 3cfy_A Putative LUXO repressor 25.3 1.8E+02 0.006 24.2 7.2 57 94-164 16-74 (137)
304 2j48_A Two-component sensor ki 25.2 2.2E+02 0.0076 22.2 7.6 59 92-164 11-71 (119)
305 1gud_A ALBP, D-allose-binding 25.1 1.4E+02 0.0049 28.9 7.4 82 77-165 2-85 (288)
306 2fep_A Catabolite control prot 25.1 1.2E+02 0.004 29.6 6.8 78 77-165 17-96 (289)
307 3fzv_A Probable transcriptiona 24.9 4.3E+02 0.015 25.3 11.1 105 547-656 186-296 (306)
308 3cz5_A Two-component response 24.7 2.3E+02 0.0079 23.9 8.0 61 92-165 15-78 (153)
309 2fqx_A Membrane lipoprotein TM 24.7 1.4E+02 0.0048 29.8 7.3 59 77-145 5-68 (318)
310 3nhm_A Response regulator; pro 24.7 2.7E+02 0.0092 22.6 8.3 68 93-175 15-84 (133)
311 3qk7_A Transcriptional regulat 24.5 86 0.0029 30.7 5.6 77 77-165 7-89 (294)
312 2i49_A Bicarbonate transporter 24.0 1.9E+02 0.0065 30.4 8.4 67 549-617 153-230 (429)
313 2pl1_A Transcriptional regulat 23.9 2.7E+02 0.0093 22.0 8.4 58 93-164 11-70 (121)
314 1i6a_A OXYR, hydrogen peroxide 23.7 1.2E+02 0.0043 27.6 6.4 68 584-654 134-203 (219)
315 3h5i_A Response regulator/sens 23.6 3.1E+02 0.011 22.6 10.4 58 92-163 15-76 (140)
316 3ojc_A Putative aspartate/glut 23.6 23 0.00078 34.0 0.9 40 65-109 107-147 (231)
317 3jte_A Response regulator rece 23.6 2.4E+02 0.0082 23.4 7.8 59 92-164 13-75 (143)
318 2qip_A Protein of unknown func 23.5 3.8E+02 0.013 23.5 9.2 96 65-165 36-134 (165)
319 2g2c_A Putative molybdenum cof 23.4 1.4E+02 0.0048 26.6 6.2 62 78-145 7-75 (167)
320 1uuy_A CNX1, molybdopterin bio 23.4 2.3E+02 0.0077 25.2 7.6 66 77-149 6-80 (167)
321 1dbw_A Transcriptional regulat 23.3 2.9E+02 0.0099 22.2 8.8 58 93-164 14-73 (126)
322 1qkk_A DCTD, C4-dicarboxylate 23.2 2.1E+02 0.007 24.3 7.4 58 93-164 14-73 (155)
323 3crn_A Response regulator rece 23.0 2.3E+02 0.0077 23.2 7.4 59 92-164 13-73 (132)
324 2rgy_A Transcriptional regulat 22.9 1.3E+02 0.0045 29.2 6.6 78 77-165 9-91 (290)
325 2y7p_A LYSR-type regulatory pr 22.7 4.3E+02 0.015 23.8 12.4 56 378-439 21-91 (218)
326 1jfl_A Aspartate racemase; alp 22.6 54 0.0019 31.1 3.5 30 75-109 115-144 (228)
327 2pfz_A Putative exported prote 22.6 98 0.0034 30.7 5.6 56 544-607 128-183 (301)
328 2vpn_A Periplasmic substrate b 22.4 82 0.0028 31.6 5.0 60 543-609 129-188 (316)
329 2vyc_A Biodegradative arginine 22.2 2.7E+02 0.0093 31.8 9.8 65 95-175 21-92 (755)
330 1oj7_A Hypothetical oxidoreduc 22.2 1.1E+02 0.0036 32.1 5.9 86 66-160 42-128 (408)
331 2esn_A Probable transcriptiona 22.1 5.3E+02 0.018 24.7 13.6 105 546-656 192-303 (310)
332 2dgd_A 223AA long hypothetical 22.0 2.4E+02 0.0083 26.2 8.0 70 74-151 2-77 (223)
333 2iks_A DNA-binding transcripti 22.0 84 0.0029 30.7 5.0 81 75-165 19-101 (293)
334 3egc_A Putative ribose operon 22.0 81 0.0028 30.8 4.8 79 76-165 8-88 (291)
335 1srr_A SPO0F, sporulation resp 22.0 2.3E+02 0.0078 22.7 7.1 59 92-164 13-73 (124)
336 1yio_A Response regulatory pro 21.8 2.7E+02 0.0091 25.1 8.2 60 92-165 14-75 (208)
337 2jfn_A Glutamate racemase; cel 21.7 2.8E+02 0.0095 27.2 8.6 33 4-36 82-114 (285)
338 2qvg_A Two component response 21.7 3.4E+02 0.012 22.3 8.4 59 92-164 17-85 (143)
339 1mb3_A Cell division response 21.6 2.5E+02 0.0086 22.4 7.3 59 92-164 11-71 (124)
340 3hdg_A Uncharacterized protein 21.6 1.9E+02 0.0064 23.8 6.6 59 92-164 17-77 (137)
341 2qzj_A Two-component response 21.5 2.5E+02 0.0085 23.2 7.4 59 92-164 14-74 (136)
342 1k68_A Phytochrome response re 21.5 2.8E+02 0.0094 22.6 7.7 59 92-164 12-81 (140)
343 3okf_A 3-dehydroquinate syntha 21.1 3.3E+02 0.011 28.1 9.2 113 51-175 41-157 (390)
344 1mvo_A PHOP response regulator 21.1 2.8E+02 0.0097 22.6 7.7 59 93-165 14-74 (136)
345 3kjx_A Transcriptional regulat 21.0 1.6E+02 0.0055 29.5 7.0 78 77-165 69-148 (344)
346 1tmy_A CHEY protein, TMY; chem 20.8 3.1E+02 0.011 21.6 7.7 61 92-165 12-74 (120)
347 3c3k_A Alanine racemase; struc 20.7 1.5E+02 0.0053 28.6 6.6 78 76-165 8-87 (285)
348 3hcw_A Maltose operon transcri 20.7 73 0.0025 31.3 4.1 78 77-165 8-92 (295)
349 3h5o_A Transcriptional regulat 20.6 1.5E+02 0.0052 29.6 6.7 81 74-165 60-142 (339)
350 3rqi_A Response regulator prot 20.5 1.8E+02 0.0063 25.8 6.6 60 92-165 17-78 (184)
351 3d8u_A PURR transcriptional re 20.5 1E+02 0.0035 29.6 5.2 78 77-165 4-83 (275)
352 2jba_A Phosphate regulon trans 20.4 2E+02 0.007 23.1 6.5 58 93-164 13-72 (127)
353 2xwv_A Sialic acid-binding per 20.4 96 0.0033 31.0 4.9 60 544-610 133-192 (312)
354 4e7p_A Response regulator; DNA 20.4 3E+02 0.01 23.1 7.8 61 92-164 30-92 (150)
355 1jlj_A Gephyrin; globular alph 20.4 1.3E+02 0.0044 27.5 5.4 69 74-149 12-87 (189)
356 3r0j_A Possible two component 20.3 2.4E+02 0.0082 26.6 7.8 59 93-165 34-94 (250)
357 3pzy_A MOG; ssgcid, seattle st 20.3 1.8E+02 0.0061 25.9 6.2 62 77-145 8-72 (164)
358 3r8n_P 30S ribosomal protein S 20.2 1.9E+02 0.0064 22.4 5.2 35 265-299 3-43 (82)
359 3gv0_A Transcriptional regulat 20.2 89 0.003 30.5 4.7 80 75-165 7-90 (288)
360 3heb_A Response regulator rece 20.1 3.6E+02 0.012 22.5 8.4 72 92-175 14-96 (152)
361 3hs3_A Ribose operon repressor 20.1 1.6E+02 0.0055 28.3 6.5 66 71-145 5-73 (277)
362 3kbq_A Protein TA0487; structu 20.1 1.8E+02 0.0063 26.1 6.2 61 78-145 5-68 (172)
363 2gzm_A Glutamate racemase; enz 20.1 2.9E+02 0.0098 26.7 8.2 32 4-35 63-94 (267)
No 1
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=100.00 E-value=3.4e-87 Score=805.68 Aligned_cols=663 Identities=19% Similarity=0.280 Sum_probs=545.3
Q ss_pred ccceEEEEcCCChhhHHHHHHhccCCCccEEeeeCCCCCCCCCCCCCCeEEEecCChHHHHHHHHHHHhhcCceEEEEEE
Q 003821 4 EKEVKVIVGMETWGAATMVADIGSRAQVPVLSFAEPAIAPPLTSTRWPFLVRMANSSAEQITCTAALVGSYNWRKVIIIY 83 (793)
Q Consensus 4 ~~~V~aiiGp~~s~~~~~va~i~~~~~iP~Is~~~~~~~~~l~~~~~~~~~r~~p~~~~~~~ai~~ll~~~~w~~vaii~ 83 (793)
+++|.|||||.+|..+.+++++++.++||+|+++. +.+ ..++|+||+.|+ |+.+++++++++||++|++||
T Consensus 58 ~~~V~aiiG~~~S~~~~a~~~i~~~~~iP~is~~~----~~~--~~~~~~~r~~p~---~~~a~~~l~~~~gw~~v~ii~ 128 (823)
T 3kg2_A 58 SRGVYAIFGFYDKKSVNTITSFCGTLHVSFITPSF----PTD--GTHPFVIQMRPD---LKGALLSLIEYYQWDKFAYLY 128 (823)
T ss_dssp HTTCSEEEECCCTTTHHHHHHHHHHTTCEEEECSC----CCS--SCCSSEEECSCC---CHHHHHHHHHHTTCSEEEEEE
T ss_pred hcCcEEEEcCCChhHHHHHHHHhhcCCCceeeccc----CCC--CCCceEEEeCCC---HHHHHHHHHHHCCCCEEEEEE
Confidence 45899999999999999999999999999999733 333 357899999999 899999999999999999999
Q ss_pred EcCCCccccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcCCceEEEEeccChHHHHHHHHHHHHc
Q 003821 84 EDDATNADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRTESRVFIILQSSLAMGIHLFREAKEM 163 (793)
Q Consensus 84 ~dd~~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivvl~~~~~~~~~~l~~a~~~ 163 (793)
||+|| .+.++.+.+++++.|+||+....++... .....|+..++.+|+++++|+||+ ++..+++..++++|+++
T Consensus 129 -d~~~g--~~~~~~~~~~~~~~g~~v~~~~~~~~~~--~~~~~d~~~~l~~i~~~~~~vii~-~~~~~~~~~~~~~a~~~ 202 (823)
T 3kg2_A 129 -DSDRG--LSTLQAVLDSAAEKKWQVTAINVGNINN--DKKDETYRSLFQDLELKKERRVIL-DCERDKVNDIVDQVITI 202 (823)
T ss_dssp -CGGGC--THHHHHHHHHHHHTTCEEEEEECSSCCS--SSTTTTTTTHHHHTTTTTCCEEEE-ECCHHHHHHHHHHHHHH
T ss_pred -eCChh--HHHHHHHHHHhhccCCceEEEEeecCCC--CccchhHHHHHHHHHhcCCeEEEE-ECCHHHHHHHHHHHHHc
Confidence 77889 9999999999999999999887776541 011256888999999999999999 99999999999999999
Q ss_pred CCCCCCeEEEEeCCcccc------------ceeecccccCCchhhhHHHHHHHHhhhhcCCCCCCCCcchhhHhHhHHHH
Q 003821 164 GLVGPDSVWVIASDTITS------------ALGIKTHFSQDSSSYKIFEDQFRSYFRSEYPEDDVSEPGIYALRAYDSIT 231 (793)
Q Consensus 164 g~~~~~~~wi~~~~~~~~------------~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~ 231 (793)
||.+++|+||.++.+..+ ++++..+.+. .|.+++|.++|+++++.+++......|+.+++++||||+
T Consensus 203 g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~ 281 (823)
T 3kg2_A 203 GKHVKGYHYIIANLGFTDGDLLKIQFGGAEVSGFQIVDYD-DSLVSKFIERWSTLEEKEYPGAHTATIKYTSALTYDAVQ 281 (823)
T ss_dssp TTTBTTCEEEECSSBSSSSCCSSSSSSBCEEEEEESSCTT-SHHHHHHHHHHTTSCTTTSTTCCSSCCCHHHHHHHHHHH
T ss_pred CcCCCCeEEEEecccccccchHHhhcCCCCceEeeeecCC-chHHHHHHHHHHhhcccccCCCCccccchhhHHHHHHHH
Confidence 999999999999323221 3444444333 488999999999988877766555668889999999999
Q ss_pred HHHHHHhhccCC--------------------CCChhhHHHhhhhcccccceeeEEEeCCCcCCCCcEEEEEeecceeEE
Q 003821 232 VVAKSIDGMTSD--------------------NSSSKISLGYILSSNFTGLSGPISFRGGKLLNSPILRIINMVGKKYKE 291 (793)
Q Consensus 232 ~la~Al~~~~~~--------------------~~~g~~l~~~l~~~~f~G~tG~i~Fd~~g~~~~~~~~I~~~~~~~~~~ 291 (793)
++|+|+++++.+ +.+|.+|.++|++++|+|++|+++||++|++.++.++|+++.++++++
T Consensus 282 ~la~Al~~~~~~~~~~~~~~~~~~c~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~fd~~G~~~~~~~~I~~~~~~g~~~ 361 (823)
T 3kg2_A 282 VMTEAFRNLRKQRIEISRRGNAGDCLANPAVPWGQGVEIERALKQVQVEGLSGNIKFDQNGKRINYTINIMELKTNGPRK 361 (823)
T ss_dssp HHHHHHHHHHTTTCCCCCSSCCCCTTCSSCCCCTHHHHHHHHHTTCCCEETTEECCBCSSSCBCSCEEEEEEECSSCEEE
T ss_pred HHHHHHHHHHhhccccccCCCCCCccCCCCCcccchHHHHHHHHhcccCCcccCeEECCCCcccccEEEEEEEcCCCCee
Confidence 999999997641 356889999999999999999999999999988999999999999999
Q ss_pred EEEecCCCCCccccccccccCCCcccCcccCCcceeecCCCCccCCCccccCCCCCcEEEEecCCCCccceEEeccC--C
Q 003821 292 IDFWLPKFGLSKTLKMEEDKNSSKVGDIRNGLIGAVIWPGDLKRDPKGRAMPTDAKPLIIGVPARTTFDKFVKLISS--D 369 (793)
Q Consensus 292 VG~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~Wp~~~~~~P~~~~~~~~~~~lrv~~~~~~~~~p~~~~~~~--~ 369 (793)
||.|++..|+..... +. ...++++|+|++...+|| ++.+++ +
T Consensus 362 vg~w~~~~g~~~~~~-------------------------------~~--~~~~~~~l~v~~~~~~P~---~~~~~~~~~ 405 (823)
T 3kg2_A 362 IGYWSEVDKMVLTED-------------------------------DT--SGLEQKTVVVTTILESPY---VMMKANHAA 405 (823)
T ss_dssp EEEEETTTEEEECCC-------------------------------CC--SSCCCCCEEEEECCCTTT---SEECTTGGG
T ss_pred EEEEcCCCCceeccC-------------------------------cc--cccCCCEEEEEEecCCCc---EEEecCccc
Confidence 999999887653220 00 012468899999766544 554321 1
Q ss_pred CCCcceeeeeeHHHHHHHHHHCCCccceeEE-------------------------EEeEEEecEEEecccccceeeccc
Q 003821 370 NPHKIIYDGYCIELFYKVLQVLKYDLPYEFS-------------------------DYDAAIGDITILVNRTRFVEFSQP 424 (793)
Q Consensus 370 ~~~~~~~~G~~~dll~~ia~~ln~~~~~~~~-------------------------~~Di~~~~~~~t~~R~~~~dfs~p 424 (793)
.+++.++.|||+||++++++++||++++... ++|++++++++|++|.+.+|||.|
T Consensus 406 ~~~~~~~~G~~~dl~~~~a~~l~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~l~~~~~D~~~~~~~~t~~R~~~~dfs~p 485 (823)
T 3kg2_A 406 LAGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKP 485 (823)
T ss_dssp CCGGGGEESHHHHHHHHHHHHHTCCEEEEECSSCCCCCBCTTTCCBCHHHHHHHTTSCSEECSCCBCCHHHHTTEEECSC
T ss_pred cCCCCceEEEHHHHHHHHHHHcCCcEEEEEccCCcccccCCCCCchhhHHHhhccccCcEEecceecchhheeeEEeccc
Confidence 1234489999999999999999999555441 899999999999999999999999
Q ss_pred ccccceEEEEecCCC--CCCcEEecCCChhHHHHHHHHHHHHHHHHHhhhcccCCCCCCCc--------------cccch
Q 003821 425 YTESGLSMVVPAKAE--QSPWIFIKPFTWGMWIVTGAILIYTMSVVWFLEHRWNPEFNGPW--------------NIQIG 488 (793)
Q Consensus 425 ~~~~~~~~~v~~~~~--~~~~~~l~PF~~~vWl~i~~~~i~~~~~~~~~~~~~~~~~~~~~--------------~~~~~ 488 (793)
|+.+++++++|++.+ .+++.|++||++.+|++++++++++++++|+++|..+.+++.+. ..++.
T Consensus 486 y~~~~~~~~v~~~~~~~~~~~~fl~Pf~~~vW~~i~~~~~~~~~~l~~~~~~~p~~w~~~~~~~~~~~~~~~~~~~~~~~ 565 (823)
T 3kg2_A 486 FMSLGISIMIKKPQKSKPGVFSFLDPLAYEIWMCIVFAYIGVSVVLFLVSRFSPYEWHTEEFEDGRETQSSESTNEFGIF 565 (823)
T ss_dssp SEEECEEEEEECCCCCCCCGGGTTTTSCHHHHHHHHHHHHHHHTTGGGTC-----------------------CHHHHHH
T ss_pred hhhCCEEEEEECCCcccccchHhhcCCchhHHHHHHHHHHHHHHHHHHHHhcChhhccCcccccccccccccccccccHH
Confidence 999999999998864 34889999999999999999999999999999998654433211 22477
Q ss_pred hHHHHHHHHHhhccc-cccccchhhHHHHHHHHHHHHHHHHHHhhhheeeeeccCCCCCCChHHhhh-CCCcccccCchH
Q 003821 489 TALWFTFSSLFFAHR-ERIYSNLTRLVVVVWLFVVLILNSSYTASLSSMLTVQRLKPNVTDIGWLKA-SNLNVGFDGDSF 566 (793)
Q Consensus 489 ~~~~~~~~~l~~~~~-~~~~s~s~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~-~~~~~g~~~~~~ 566 (793)
+++|++++++++||. ..|++.++|+++++||+++||++++|||+|+|+||.+++.++|+|++||.+ +++++|+..++.
T Consensus 566 ~~~~~~~~~l~~~g~~~~p~~~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~I~s~~dL~~~~~i~~~~~~~~~ 645 (823)
T 3kg2_A 566 NSLWFSLGAFMQQGADISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVERMVSPIESAEDLSKQTEIAYGTLDSGS 645 (823)
T ss_dssp HHHHHTTTTSCC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSHHHHHCCSSEEECBSSSH
T ss_pred HHHHHHHHHHHhcCCCcCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCHHHHhhCCCeeEEEEeCCc
Confidence 999999999999994 467999999999999999999999999999999999999999999999975 467888876666
Q ss_pred HHHHHHhhcCCC----------CccccccCCHHHHHHHhh-cCceEEEEechhhHHHHHhcc-CCceEEeCccccccceE
Q 003821 567 VRNYLENVLGFK----------PENILKVDHEYKYITDFE-SNRIAAAFLELSYERAFLSQH-CKEYTATIPTYRFGGFA 634 (793)
Q Consensus 567 ~~~~l~~~~~~~----------~~~~~~~~~~~~~~~~l~-~g~~~a~~~~~~~~~~~~~~~-c~~~~~~~~~~~~~~~~ 634 (793)
...++.+..... ......+.+.++++++++ +++.+|++.+.+.++|+.+++ |+ ++.+++.+...+|+
T Consensus 646 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~y~~~~~~c~-l~~v~~~~~~~~~~ 724 (823)
T 3kg2_A 646 TKEFFRRSKIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCD-TMKVGGNLDSKGYG 724 (823)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHCSSCCCBSSHHHHHHHHHTTTTSEEEEEEHHHHHHHHTSTTCC-EEEESCCSSCEEEC
T ss_pred HHHHHHhccchHHHHHHHHHHhcCCccccCCHHHHHHHHhccCCceEEEechHHHHHHHhcCCCc-eEEcccccccccee
Confidence 777776531100 001123468899999997 566689999999999888776 88 88889999999999
Q ss_pred EEecCCCcChHHHHHHHHhhhccCchHHHHHHHcCCCCCCCCCcccCCCccccccccchhHHHHHHHHHHHHHHHHHHHH
Q 003821 635 FVFQKGSPLAADFSEAILKLSENGELRSLEEKWFAPSPECSGSAEVNNNKTECLSLQDFWGLFLISGTTSTICALVFLVR 714 (793)
Q Consensus 635 ~~~~k~spl~~~in~~i~~l~e~G~~~~~~~~w~~~~~~c~~~~~~~~~~~~~L~l~~l~g~f~il~~g~~ls~lvf~~E 714 (793)
+++||||||++.||++|++|+|+|++++|.++|+...+.|............+|+++++.|+|+++++|+++|+++|++|
T Consensus 725 ~~~~k~spl~~~~~~~il~l~e~G~~~~~~~~w~~~~~~c~~~~~~~~~~~~~L~l~~l~g~f~il~~g~~la~~vf~~E 804 (823)
T 3kg2_A 725 IATPKGSSLGTPVNLAVLKLSEQGLLDKLKNKWWYDKGECGAKDSGSKEKTSALSLSNVAGVFYILVGGLGLAMLVALIE 804 (823)
T ss_dssp CEEETTCSSHHHHHHHHHHHHHTTHHHHHHHHHHTTSCSCSSTTTSTTTCCCSCCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EeecCCChHHHHHHHHHHHHHhCCcHHHHHHhhCcCCCCCCCCCccccccCCccchhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998888998763233356679999999999999999999999999999
Q ss_pred Hhhhc
Q 003821 715 NYTSR 719 (793)
Q Consensus 715 ~~~~~ 719 (793)
+..++
T Consensus 805 ~~~~~ 809 (823)
T 3kg2_A 805 FCYKS 809 (823)
T ss_dssp HHHC-
T ss_pred HHHHc
Confidence 54443
No 2
>3o21_A Glutamate receptor 3; periplasmatic binding protein, oligomerization, membrane, TR protein; HET: NAG; 2.20A {Rattus norvegicus} PDB: 3p3w_A
Probab=100.00 E-value=5.2e-39 Score=350.48 Aligned_cols=280 Identities=14% Similarity=0.173 Sum_probs=239.2
Q ss_pred cceEEEEcCCChhhHHHHHHhccCCCccEEeeeCCCCCCCCCCCCCCeEEEecCChHHHHHHHHHHHhhcCceEEEEEEE
Q 003821 5 KEVKVIVGMETWGAATMVADIGSRAQVPVLSFAEPAIAPPLTSTRWPFLVRMANSSAEQITCTAALVGSYNWRKVIIIYE 84 (793)
Q Consensus 5 ~~V~aiiGp~~s~~~~~va~i~~~~~iP~Is~~~~~~~~~l~~~~~~~~~r~~p~~~~~~~ai~~ll~~~~w~~vaii~~ 84 (793)
++|.|||||.+|..+.+++++++.++||+|+++. |.++ ..+|.||+.|+ |+.+++++++++||++|++||
T Consensus 68 ~~V~aiiG~~~S~~~~a~~~i~~~~~iP~Is~s~----~~~~--~~~~~~~~~p~---~~~a~~~~~~~~gw~~vaii~- 137 (389)
T 3o21_A 68 RGVYAIFGFYDQMSMNTLTSFCGALHTSFVTPSF----PTDA--DVQFVIQMRPA---LKGAILSLLSYYKWEKFVYLY- 137 (389)
T ss_dssp TTCSCEEECCCTTTHHHHHHHHHHHTCCEEECSC----CCSS--CCSSEEECSCC---SHHHHHHHHHHHTCCEEEEEE-
T ss_pred cCcEEEEeCCChhHHHHHHHHhccCCCceeecCC----CCcc--CCceEEEEccC---HHHHHHHHHHhCCCCEEEEEE-
Confidence 4899999999999999999999999999998753 3332 45677888887 999999999999999999999
Q ss_pred cCCCccccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcCCceEEEEeccChHHHHHHHHHHHHcC
Q 003821 85 DDATNADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRTESRVFIILQSSLAMGIHLFREAKEMG 164 (793)
Q Consensus 85 dd~~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivvl~~~~~~~~~~l~~a~~~g 164 (793)
|++|| ...++.+.+.+++.|+||+....++... ..|+..+|.+|+++++|+||+ +++.+++..+++||+++|
T Consensus 138 d~~~g--~~~~~~~~~~~~~~g~~v~~~~~~~~~~-----~~d~~~~l~~ik~~~~~vii~-~~~~~~~~~i~~qa~~~g 209 (389)
T 3o21_A 138 DTERG--FSVLQAIMEAAVQNNWQVTARSVGNIKD-----VQEFRRIIEEMDRRQEKRYLI-DCEVERINTILEQVVILG 209 (389)
T ss_dssp CSTTC--SHHHHHHHHHHHHTTCEEEEEECTTCCC-----THHHHHHHHHHHTTTCCEEEE-ESCHHHHHHHHHHHHHHC
T ss_pred cCcHH--HHHHHHHHHHhhcCCCeEEEEEecCCCC-----cHHHHHHHHHHHhCCCeEEEE-ECCHHHHHHHHHHHHHcC
Confidence 77999 9999999999999999999876665322 258999999999999999999 999999999999999999
Q ss_pred CCCCCeEEEEeCCcccc------------ceeecccccCCchhhhHHHHHHHHhhhhcCCCCCCCCcchhhHhHhHHHHH
Q 003821 165 LVGPDSVWVIASDTITS------------ALGIKTHFSQDSSSYKIFEDQFRSYFRSEYPEDDVSEPGIYALRAYDSITV 232 (793)
Q Consensus 165 ~~~~~~~wi~~~~~~~~------------~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~~ 232 (793)
|.+++|+||+++++..+ +.++..+.+ .+|.+++|.++|+++|+.+++......++.+++++||||++
T Consensus 210 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~~ 288 (389)
T 3o21_A 210 KHSRGYHYMLANLGFTDILLERVMHGGANITGFQIVNN-ENPMVQQFIQRWVRLDEREFPEAKNAPLKYTSALTHDAILV 288 (389)
T ss_dssp SCSTTCEEEECCTTGGGCCCHHHHHTTCEEEEEESCCT-TCHHHHHHHHHHTTSCTTTSTTSSSSCCCHHHHHHHHHHHH
T ss_pred cccCCeEEEEccCCcccccHHHHhcCCcceEEEEEecC-CChhHHHHHHHHHhccccccCCCCCCccchhHHHHHHHHHH
Confidence 99999999998545432 334433333 35899999999998887655543334567899999999999
Q ss_pred HHHHHhhccC--------------------CCCChhhHHHhhhhcccccceeeEEEeCCCcCCCCcEEEEEeecceeEEE
Q 003821 233 VAKSIDGMTS--------------------DNSSSKISLGYILSSNFTGLSGPISFRGGKLLNSPILRIINMVGKKYKEI 292 (793)
Q Consensus 233 la~Al~~~~~--------------------~~~~g~~l~~~l~~~~f~G~tG~i~Fd~~g~~~~~~~~I~~~~~~~~~~V 292 (793)
+++|+++++. .|.+|..|+++|++++|+|++|+++||++|++.++.++|+++.++++++|
T Consensus 289 ~a~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~Fd~~G~~~~~~~~i~~~~~~g~~~V 368 (389)
T 3o21_A 289 IAEAFRYLRRQRVDVSRRGSAGDCLANPAVPWSQGIDIERALKMVQVQGMTGNIQFDTYGRRTNYTIDVYEMKVSGSRKA 368 (389)
T ss_dssp HHHHHHHHHHTTCCCC-----CCSCSSSCCCTTTTHHHHHHHHTCCEEETTEEECBCTTSBBCSCCEEEEEEETTEEEEE
T ss_pred HHHHHHHHHhhCcccccCCCCCcCCCCCCCCCCCcHHHHHHHHhCcccccceeeeeCCCCCcccceEEEEEEcCCCceee
Confidence 9999998762 23568899999999999999999999999999889999999999999999
Q ss_pred EEecCCCCCcc
Q 003821 293 DFWLPKFGLSK 303 (793)
Q Consensus 293 G~w~~~~g~~~ 303 (793)
|+|++..|++.
T Consensus 369 G~w~~~~g~~~ 379 (389)
T 3o21_A 369 GYWNEYERFVP 379 (389)
T ss_dssp EEEETTTEEEC
T ss_pred eEEcCCCCccc
Confidence 99999998764
No 3
>3hsy_A Glutamate receptor 2; ligand-gated ION channel, synapse, cell CELL membrane, endoplasmic reticulum, glycoprotein, ION TRA ionic channel; HET: NAG BMA; 1.75A {Rattus norvegicus} PDB: 3h5v_A* 3h5w_A 3o2j_A* 2wjw_A* 2wjx_A 3n6v_A
Probab=100.00 E-value=4.8e-39 Score=349.58 Aligned_cols=282 Identities=15% Similarity=0.204 Sum_probs=225.1
Q ss_pred cceEEEEcCCChhhHHHHHHhccCCCccEEeeeCCCCCCCCCCCCCCeEEEecCChHHHHHHHHHHHhhcCceEEEEEEE
Q 003821 5 KEVKVIVGMETWGAATMVADIGSRAQVPVLSFAEPAIAPPLTSTRWPFLVRMANSSAEQITCTAALVGSYNWRKVIIIYE 84 (793)
Q Consensus 5 ~~V~aiiGp~~s~~~~~va~i~~~~~iP~Is~~~~~~~~~l~~~~~~~~~r~~p~~~~~~~ai~~ll~~~~w~~vaii~~ 84 (793)
++|.|||||.+|..+.+++++++.++||+|+++++ + ....+|+||+.|+ |+.+++++++++||++|++||
T Consensus 59 ~~V~aiiG~~~S~~~~av~~~~~~~~ip~is~~~~--~----~~~~~~~~~~~p~---~~~a~~~~~~~~gw~~vaii~- 128 (376)
T 3hsy_A 59 RGVYAIFGFYDKKSVNTITSFCGTLHVSFITPSFP--T----DGTHPFVIQMRPD---LKGALLSLIEYYQWDKFAYLY- 128 (376)
T ss_dssp TTCSEEEECCCTTTHHHHHHHHHHHTCEEEECSCC--C----CSCCTTEEECSCC---CHHHHHHHHHHTTCCEEEEEE-
T ss_pred cCcEEEECCCchhHHHHHHHHhccCcCceeecCCC--C----cccCCceEEeCcc---HHHHHHHHHHhcCCCEEEEEE-
Confidence 48999999999999999999999999999998765 2 2356789999987 899999999999999999999
Q ss_pred cCCCccccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcCCceEEEEeccChHHHHHHHHHHHHcC
Q 003821 85 DDATNADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRTESRVFIILQSSLAMGIHLFREAKEMG 164 (793)
Q Consensus 85 dd~~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivvl~~~~~~~~~~l~~a~~~g 164 (793)
|++|| .+.++.+.+.+++.|++|+....++... .....|+..+|.+|+++++|+|++ ++..+++..+++||+++|
T Consensus 129 d~~~g--~~~~~~~~~~~~~~g~~v~~~~~~~~~~--~~~~~d~~~~l~~i~~~~~~vii~-~~~~~~~~~~~~qa~~~g 203 (376)
T 3hsy_A 129 DSDRG--LSTLQAVLDSAAEKKWQVTAINVGNINN--DKKDETYRSLFQDLELKKERRVIL-DCERDKVNDIVDQVITIG 203 (376)
T ss_dssp CSTTC--SHHHHHHHHHHHHHTCEEEEEECTTCC----------------------CEEEE-ESCHHHHHHHHHHHHHHT
T ss_pred eCchh--HHHHHHHHHHhhhcCCeEEEEEeccccc--cccchhHHHHHHHHhhCCCeEEEE-ECCHHHHHHHHHHHHHcc
Confidence 78899 9999999999999999998776554220 001267999999999999999999 999999999999999999
Q ss_pred CCCCCeEEEEeCCc-ccc------------ceeecccccCCchhhhHHHHHHHHhhhhcCCCCCCCCcchhhHhHhHHHH
Q 003821 165 LVGPDSVWVIASDT-ITS------------ALGIKTHFSQDSSSYKIFEDQFRSYFRSEYPEDDVSEPGIYALRAYDSIT 231 (793)
Q Consensus 165 ~~~~~~~wi~~~~~-~~~------------~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~ 231 (793)
|.++.|+||++ ++ ... +.++..+.+ .+|.+++|.++|+++|+++++......|+.+++++||||+
T Consensus 204 ~~~~~~~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~aa~~YDav~ 281 (376)
T 3hsy_A 204 KHVKGYHYIIA-NLGFTDGDLLKIQFGGANVSGFQIVDY-DDSLVSKFIERWSTLEEKEYPGAHTATIKYTSALTYDAVQ 281 (376)
T ss_dssp SSGGGCEEEEC-SSBTTSTTGGGSCCTTCEEEEEESCCT-TSHHHHHHHHHHTTSCTTTSTTCSCSSCCHHHHHHHHHHH
T ss_pred cCCCCcEEEEc-CCCccccchHHhhcCCcCceEEEEecC-CchHHHHHHHHHHhccccccCCCCCcccchhHHHHHHHHH
Confidence 99999999999 53 221 233333333 3588999999999988776654434468899999999999
Q ss_pred HHHHHHhhccC--------------------CCCChhhHHHhhhhcccccceeeEEEeCCCcCCCCcEEEEEeecceeEE
Q 003821 232 VVAKSIDGMTS--------------------DNSSSKISLGYILSSNFTGLSGPISFRGGKLLNSPILRIINMVGKKYKE 291 (793)
Q Consensus 232 ~la~Al~~~~~--------------------~~~~g~~l~~~l~~~~f~G~tG~i~Fd~~g~~~~~~~~I~~~~~~~~~~ 291 (793)
++++|+++++. .|.+|..|+++|++++|+|++|+|+||++|++.++.++|+++.++++++
T Consensus 282 ~la~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~fd~~G~~~~~~~~i~~~~~~g~~~ 361 (376)
T 3hsy_A 282 VMTEAFRNLRKQRIEISRRGNAGDCLANPAVPWGQGVEIERALKQVQVEGLSGNIKFDQNGKRINYTINIMELKTNGPRK 361 (376)
T ss_dssp HHHHHHHHHHHTTCCCSCCCCCCCTTCSSCCCCHHHHHHHHHHHHCCEEETTEEECBCTTSBBCSCEEEEEEEETTEEEE
T ss_pred HHHHHHHHHHhcCCccccCCCCCccCCCCCCCcCCcHHHHHHHHhcCcCCCccceeECCCCCCccceEEEEEecCCCceE
Confidence 99999999753 1245689999999999999999999999999989999999999999999
Q ss_pred EEEecCCCCCcc
Q 003821 292 IDFWLPKFGLSK 303 (793)
Q Consensus 292 VG~w~~~~g~~~ 303 (793)
||+|++..|++.
T Consensus 362 VG~w~~~~g~~~ 373 (376)
T 3hsy_A 362 IGYWSEVDKMVV 373 (376)
T ss_dssp EEEEETTTEEEE
T ss_pred EEEEcCCCCcee
Confidence 999999988663
No 4
>3saj_A Glutamate receptor 1; rossman fold, ION channel, membrane, transport protein; HET: NAG BMA MAN; 2.50A {Rattus norvegicus}
Probab=100.00 E-value=1.2e-37 Score=339.70 Aligned_cols=279 Identities=14% Similarity=0.201 Sum_probs=237.3
Q ss_pred ccceEEEEcCCChhhHHHHHHhccCCCccEEeeeCCCCCCCCCCCCCCeEEEecCChHHHHHHHHHHHhhcCceEEEEEE
Q 003821 4 EKEVKVIVGMETWGAATMVADIGSRAQVPVLSFAEPAIAPPLTSTRWPFLVRMANSSAEQITCTAALVGSYNWRKVIIIY 83 (793)
Q Consensus 4 ~~~V~aiiGp~~s~~~~~va~i~~~~~iP~Is~~~~~~~~~l~~~~~~~~~r~~p~~~~~~~ai~~ll~~~~w~~vaii~ 83 (793)
+++|.|||||.+|..+.+++++++.++||+|++++ |.++ ..+|+||+.|+ |+.+++++++++||++|++||
T Consensus 65 ~~~V~aiiG~~~S~~~~a~~~~~~~~~iP~is~~~----~~~~--~~~~~~~~~p~---~~~a~~~~~~~~g~~~v~ii~ 135 (384)
T 3saj_A 65 SKGVYAIFGFYERRTVNMLTSFCGALHVCFITPSF----PVDT--SNQFVLQLRPE---LQEALISIIDHYKWQTFVYIY 135 (384)
T ss_dssp HTTCSCEEECCCHHHHHHHHHHHHHHTCCEEECSC----CCSS--CCTTEEECSCC---CHHHHHHHHHHTTCCEEEEEE
T ss_pred hcCeEEEECCCCHHHHHHHHHHhccCCCCeEeccc----cCcC--ccCceEEeccc---HHHHHHHHHHHCCCcEEEEEE
Confidence 34899999999999999999999999999999843 4443 45678899887 899999999999999999999
Q ss_pred EcCCCccccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcCCceEEEEeccChHHHHHHHHHHHHc
Q 003821 84 EDDATNADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRTESRVFIILQSSLAMGIHLFREAKEM 163 (793)
Q Consensus 84 ~dd~~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivvl~~~~~~~~~~l~~a~~~ 163 (793)
|++|| ...++.+.+.+++.|+||+....++... .|+..+|.+|+++++|+|++ ++..+++..++++|+++
T Consensus 136 -d~~~g--~~~~~~~~~~~~~~g~~v~~~~~~~~~~------~d~~~~l~~ik~~~~~vii~-~~~~~~~~~~~~qa~~~ 205 (384)
T 3saj_A 136 -DADRG--LSVLQRVLDTAAEKNWQVTAVNILTTTE------EGYRMLFQDLEKKKERLVVV-DCESERLNAILGQIVKL 205 (384)
T ss_dssp -CSTTC--SHHHHHHHHHHHHHTCEEEEEEGGGCCH------HHHHHTTTTCCSCSEEEEEE-ECCGGGHHHHHHHHHHT
T ss_pred -eCchh--HHHHHHHHHHhhhcCceEEEEEeccCCc------hhHHHHHHHHhccCCcEEEE-EcCHHHHHHHHHHHHHc
Confidence 66899 9999999999999999999876544433 68999999999999999999 89999999999999999
Q ss_pred CCCCCCeEEEEeCCcccc------------ceeecccccCCchhhhHHHHHHHHhhhhcCCCCCCCCcchhhHhHhHHHH
Q 003821 164 GLVGPDSVWVIASDTITS------------ALGIKTHFSQDSSSYKIFEDQFRSYFRSEYPEDDVSEPGIYALRAYDSIT 231 (793)
Q Consensus 164 g~~~~~~~wi~~~~~~~~------------~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~ 231 (793)
||.+++|+|++++.+... +.++..+.+ .+|.+++|.++|+++++.++|......++.+++++|||++
T Consensus 206 g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~F~~~~~~~~~~~~p~~~~~~~~~~aa~~YDav~ 284 (384)
T 3saj_A 206 EKNGIGYHYILANLGFMDIDLNKFKESGANVTGFQLVNY-TDTIPARIMQQWRTSDSRDHTRVDWKRPKYTSALTYDGVK 284 (384)
T ss_dssp CCTTCEEEEEESSSCGGGSCHHHHHHTTCCEEEEECCCT-TSHHHHHHHHHHHHHHHHC------CCCCHHHHHHHHHHH
T ss_pred CCCCCCcEEEEECCCcccccHHHhhCCCcceEEEEeecC-CChHHHHHHHHHHhcCccccCCCCCCccchhHHHHHHHHH
Confidence 999999999999433321 334443333 3588999999999999887665444466889999999999
Q ss_pred HHHHHHhhccC--------------------CCCChhhHHHhhhhcccccceeeEEEeCCCcCCCCcEEEEEeecceeEE
Q 003821 232 VVAKSIDGMTS--------------------DNSSSKISLGYILSSNFTGLSGPISFRGGKLLNSPILRIINMVGKKYKE 291 (793)
Q Consensus 232 ~la~Al~~~~~--------------------~~~~g~~l~~~l~~~~f~G~tG~i~Fd~~g~~~~~~~~I~~~~~~~~~~ 291 (793)
++++|++++++ .|.+|..|+++|++++|+|++|+++||++|++.++.|+|+++.++++++
T Consensus 285 ~~a~Al~~~~~~~~~~~~~~~~~~c~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~fd~~G~~~~~~~~i~~~~~~g~~~ 364 (384)
T 3saj_A 285 VMAEAFQSLRRQRIDISRRGNAGDCLANPAVPWGQGIDIQRALQQVRFEGLTGNVQFNEKGRRTNYTLHVIEMKHDGIRK 364 (384)
T ss_dssp HHHHHHHHHHHTTCCCCCCCSCCCSCCBSCCCCTTHHHHHHHHHSCCEEETTEEECBCTTSBBCSCCEEEEEEETTEEEE
T ss_pred HHHHHHHHHHhhccceecCCCCCCCCCCCCCCcCCcHHHHHHHHhCcCcccceeeEeCCCCCcccceEEEEEeccCCcce
Confidence 99999998864 1368899999999999999999999999999989999999999999999
Q ss_pred EEEecCCCCCc
Q 003821 292 IDFWLPKFGLS 302 (793)
Q Consensus 292 VG~w~~~~g~~ 302 (793)
||+|++..|+.
T Consensus 365 VG~W~~~~gl~ 375 (384)
T 3saj_A 365 IGYWNEDDKFV 375 (384)
T ss_dssp EEEEETTTEEE
T ss_pred eEEEcCCCCcc
Confidence 99999988765
No 5
>3h6g_A Glutamate receptor, ionotropic kainate 2; membrane protein glycoprotein, cell junction, cell membrane, glycoprotein, ION transport; HET: NAG TLA; 2.70A {Rattus norvegicus} PDB: 3h6h_A* 3qlv_C 3qlu_C* 3qlt_A* 3olz_A*
Probab=100.00 E-value=4e-37 Score=337.18 Aligned_cols=284 Identities=19% Similarity=0.238 Sum_probs=242.1
Q ss_pred ccceEEEEcCCChhhHHHHHHhccCCCccEEeeeCCCCCCCCCCCCCCeEEEecCChHHHHHHHHHHHhhcCceEEEEEE
Q 003821 4 EKEVKVIVGMETWGAATMVADIGSRAQVPVLSFAEPAIAPPLTSTRWPFLVRMANSSAEQITCTAALVGSYNWRKVIIIY 83 (793)
Q Consensus 4 ~~~V~aiiGp~~s~~~~~va~i~~~~~iP~Is~~~~~~~~~l~~~~~~~~~r~~p~~~~~~~ai~~ll~~~~w~~vaii~ 83 (793)
+++|.|||||.+|..+.+++++++.++||+|+++++ ++.+++ +.+|+||+.|++..|+.+++++++++||++|++||
T Consensus 69 ~~~V~aiiG~~~S~~~~a~~~~~~~~~ip~is~~~~--~~~l~~-~~~~~~r~~~~~~~~~~~~~~~~~~~g~~~v~ii~ 145 (395)
T 3h6g_A 69 SLGVAAIFGPSHSSSANAVQSICNALGVPHIQTRWK--HQVSDN-KDSFYVSLYPDFSSLSRAILDLVQFFKWKTVTVVY 145 (395)
T ss_dssp HHCCSCEECCSSHHHHHHHHHHHHHTTCCEEECSCC--CCCTTC-CCCSEEEEEECHHHHHHHHHHHHHHTTCSEEEEEE
T ss_pred hcCcEEEECCCChhHHHHHHHHHhcCCCCeEeeccC--cccccc-cCceEEEecCCHHHHHHHHHHHHHHCCCeEEEEEE
Confidence 368999999999999999999999999999999998 788865 46889999999999999999999999999999998
Q ss_pred EcCCCccccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcCCceEEEEeccChHHHHHHHHHHHHc
Q 003821 84 EDDATNADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRTESRVFIILQSSLAMGIHLFREAKEM 163 (793)
Q Consensus 84 ~dd~~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivvl~~~~~~~~~~l~~a~~~ 163 (793)
|++|| ...++.+++.+++.|++++... ++... .|+..++.+|+++++|+|++ ++..+++..+++||+++
T Consensus 146 -d~~~g--~~~~~~~~~~~~~~g~~v~~~~-~~~~~------~d~~~~l~~i~~~~~~vi~~-~~~~~~~~~~~~qa~~~ 214 (395)
T 3h6g_A 146 -DDSTG--LIRLQELIKAPSRYNLRLKIRQ-LPADT------KDAKPLLKEMKRGKEFHVIF-DCSHEMAAGILKQALAM 214 (395)
T ss_dssp -SSTHH--HHHTHHHHTGGGTSSCEEEEEE-CCSSG------GGGHHHHHHHHHTTCCEEEE-ESCHHHHHHHHHHHHHT
T ss_pred -EChhH--HHHHHHHHHhhhcCCceEEEEE-eCCCc------hhHHHHHHHHhhcCCeEEEE-ECCHHHHHHHHHHHHHc
Confidence 56789 9999999999999999998764 76654 67999999999999999999 99999999999999999
Q ss_pred CCCCCCeEEEEeCCcccc-------------ceeecccccCCchhhhHHHHHHHHhhhhcCCCCC----CCCcchhhHhH
Q 003821 164 GLVGPDSVWVIASDTITS-------------ALGIKTHFSQDSSSYKIFEDQFRSYFRSEYPEDD----VSEPGIYALRA 226 (793)
Q Consensus 164 g~~~~~~~wi~~~~~~~~-------------~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~----~~~~~~~a~~~ 226 (793)
||.++.|+|+++ .+... +.++..+ ...+|..++|.++|++++....|... ...++.+++++
T Consensus 215 gl~~~~~~~i~~-~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~p~~~~~~~~~~~~~~aa~~ 292 (395)
T 3h6g_A 215 GMMTEYYHYIFT-TLDLFALDVEPYRYSGVNMTGFRIL-NTENTQVSSIIEKWSMERLQAPPKPDSGLLDGFMTTDAALM 292 (395)
T ss_dssp TCCSTTCEEEEC-CTTGGGBCCTTTTTSCCEEEEEECS-CTTSHHHHHHHHHHHHC------CCSSCBCTTCCCHHHHHH
T ss_pred cccCCceEEEEe-cCceeEechHHhccCccceEEEEEe-cCCcHHHHHHHHHHHhcccccCcccCCCcCCCccchhHHHH
Confidence 999999999998 44321 2233322 22358899999999987644332211 12367799999
Q ss_pred hHHHHHHHHHHhhccC------------CCCChhhHHHhhhhcccccceeeEEEeC-CCcCCCCcEEEEEeecceeEEEE
Q 003821 227 YDSITVVAKSIDGMTS------------DNSSSKISLGYILSSNFTGLSGPISFRG-GKLLNSPILRIINMVGKKYKEID 293 (793)
Q Consensus 227 YDAv~~la~Al~~~~~------------~~~~g~~l~~~l~~~~f~G~tG~i~Fd~-~g~~~~~~~~I~~~~~~~~~~VG 293 (793)
|||++++++|++++++ .|.++..+.++|++++|+|++|+++||+ +|++.++.+.|+++.++++++||
T Consensus 293 YDav~~~a~Al~~a~~~~~~~~~c~~~~~~~~~~~l~~al~~~~~~G~tG~i~fd~~~G~~~~~~~~i~~~~~~~~~~vG 372 (395)
T 3h6g_A 293 YDAVHVVSVAVQQFPQMTVSSLQCNRHKPWRFGTRFMSLIKEAHWEGLTGRITFNKTNGLRTDFDLDVISLKEEGLEKIG 372 (395)
T ss_dssp HHHHHHHHHHHHTCTTCCCCCCCTTSCCCCTTHHHHHHHHHHCEEEETTEEEECCTTTSEECCCCEEEEEEETTEEEEEE
T ss_pred HhHHHHHHHHHHhhhcCCCcCCCCCCCCcCcccHHHHHHHhcCCCcCcceeeEecCCCCeecCCeEEEEEeccCCceEEE
Confidence 9999999999999975 2368899999999999999999999998 99998889999999999999999
Q ss_pred EecCCCCCcc
Q 003821 294 FWLPKFGLSK 303 (793)
Q Consensus 294 ~w~~~~g~~~ 303 (793)
+|++..|+..
T Consensus 373 ~w~~~~g~~~ 382 (395)
T 3h6g_A 373 TWDPASGLNM 382 (395)
T ss_dssp EEETTTEECC
T ss_pred EEcCCCCccc
Confidence 9999888663
No 6
>4gpa_A Glutamate receptor 4; PBP fold, ligand-gated ION channel, ION transport, transmembrane AMPA receptor regulating proteins, cornichons, ckamp44; HET: NAG; 2.25A {Rattus norvegicus}
Probab=100.00 E-value=7.1e-37 Score=334.72 Aligned_cols=277 Identities=14% Similarity=0.204 Sum_probs=233.1
Q ss_pred ccceEEEEcCCChhhHHHHHHhccCCCccEEeeeCCCCCCCCCCCCCCeEEEecCChHHHHHHHHHHHhhcCceEEEEEE
Q 003821 4 EKEVKVIVGMETWGAATMVADIGSRAQVPVLSFAEPAIAPPLTSTRWPFLVRMANSSAEQITCTAALVGSYNWRKVIIIY 83 (793)
Q Consensus 4 ~~~V~aiiGp~~s~~~~~va~i~~~~~iP~Is~~~~~~~~~l~~~~~~~~~r~~p~~~~~~~ai~~ll~~~~w~~vaii~ 83 (793)
+++|+|||||.+|.++.+++++++.++||+|+++++ .+. ..+|.+++.|. +++++++++++|||++|++||
T Consensus 67 ~~~V~aiiG~~~S~~~~~v~~i~~~~~ip~is~~~~--~~~----~~~~~~~~~~~---~~~a~~~l~~~~~w~~vaii~ 137 (389)
T 4gpa_A 67 SRGVFAIFGLYDKRSVHTLTSFCSALHISLITPSFP--TEG----ESQFVLQLRPS---LRGALLSLLDHYEWNCFVFLY 137 (389)
T ss_dssp HTTCSEEEECCCTTTHHHHHHHHHHTTCEEEECSCC--CSS----CCSSEEECSCC---CHHHHHHHHHHTTCCEEEEEE
T ss_pred hcCCEEEEeCCccHHHHHHHHHHHHhCCCceecccc--ccc----cccCCccccCC---HHHHHHHHHHHcCCcEEEEEE
Confidence 478999999999999999999999999999998766 332 23455556665 457999999999999999999
Q ss_pred EcCCCccccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcCCceEEEEeccChHHHHHHHHHHHHc
Q 003821 84 EDDATNADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRTESRVFIILQSSLAMGIHLFREAKEM 163 (793)
Q Consensus 84 ~dd~~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivvl~~~~~~~~~~l~~a~~~ 163 (793)
++|+++ . .++.+.+.+++.|++++....++... .++..+|.++++.++++||+ .+..+++..++++|+++
T Consensus 138 ~~d~~~--~-~~~~~~~~~~~~g~~v~~~~~~~~~~------~d~~~~l~~i~~~~~~vIv~-~~~~~~~~~il~~a~~~ 207 (389)
T 4gpa_A 138 DTDRGY--S-ILQAIMEKAGQNGWHVSAICVENFND------VSYRQLLEELDRRQEKKFVI-DCEIERLQNILEQIVSV 207 (389)
T ss_dssp CSTTCS--H-HHHHHHHHHHTTTCEEEEEECTTCCH------HHHHHHHHHHHHHTCCEEEE-ECCHHHHHHHHHHHHHH
T ss_pred ecchhh--H-HHHHHHHHHHhcCceEEEEeecCCcc------hhHHHHHHHhhccCCcEEEE-EechhHHHHHHHHHHHh
Confidence 888765 4 46778888999999998877666544 78999999999999999999 99999999999999999
Q ss_pred CCCCCCeEEEEeCCcccc-------------ceeecccccCCchhhhHHHHHHHHhhhhcCCCCCCCCcchhhHhHhHHH
Q 003821 164 GLVGPDSVWVIASDTITS-------------ALGIKTHFSQDSSSYKIFEDQFRSYFRSEYPEDDVSEPGIYALRAYDSI 230 (793)
Q Consensus 164 g~~~~~~~wi~~~~~~~~-------------~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv 230 (793)
||.+++++|+++ ++... +.++..+.+ ..+.+++|.++|++.+.+.++. .+..|+.+++++||||
T Consensus 208 g~~~~~~~~i~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~f~~~~~~~~~~~~~~-~~~~~~~~~a~~YDAV 284 (389)
T 4gpa_A 208 GKHVKGYHYIIA-NLGFKDISLERFIHGGANVTGFQLVDF-NTPMVTKLMDRWKKLDQREYPG-SETPPKYTSALTYDGV 284 (389)
T ss_dssp TCSBTTCEEEEC-SSBGGGSCCHHHHHHBCEEEEEECSCT-TSHHHHHHHHHHTTSCTTTSTT-TTSCCCHHHHHHHHHH
T ss_pred CCCCCceEEEEe-CccccchhhhhhhhcccceEEEEeecC-CChHHHHHHHHHHHHhhhhccc-CCCChhHHHHHHHHHH
Confidence 999999999999 55443 334444433 3488999999998877654433 3456788999999999
Q ss_pred HHHHHHHhhccCC--------------------CCChhhHHHhhhhcccccceeeEEEeCCCcCCCCcEEEEEeecceeE
Q 003821 231 TVVAKSIDGMTSD--------------------NSSSKISLGYILSSNFTGLSGPISFRGGKLLNSPILRIINMVGKKYK 290 (793)
Q Consensus 231 ~~la~Al~~~~~~--------------------~~~g~~l~~~l~~~~f~G~tG~i~Fd~~g~~~~~~~~I~~~~~~~~~ 290 (793)
+++|+||+++... |.+|..|+++|++++|+|+||+|+||++|+|.++.|+|+|+++++++
T Consensus 285 ~~~A~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~~~l~~v~f~G~tG~v~Fd~~G~r~~~~~~I~~l~~~~~~ 364 (389)
T 4gpa_A 285 LVMAETFRSLRRQKIDISRRGNAGDCLANPAAPWGQGIDMERTLKQVRIQGLTGNVQFDHYGRRVNYTMDVFELKSTGPR 364 (389)
T ss_dssp HHHHHHHHHHHHTTCCCCCTTCCCCTTCSSCCCCTTHHHHHHHHHTCEEEETTEEEEBCTTSCBCSCEEEEEEEETTEEE
T ss_pred HHHHHHHHHHHhhcccccccCCccccccCCCcccchHHHHHHHHHhCceecCceeEEECCCCCCCCCEEEEEEEECCEEE
Confidence 9999999987431 34678899999999999999999999999998899999999999999
Q ss_pred EEEEecCCCCCc
Q 003821 291 EIDFWLPKFGLS 302 (793)
Q Consensus 291 ~VG~w~~~~g~~ 302 (793)
+||.|++..|+.
T Consensus 365 ~VG~W~~~~gl~ 376 (389)
T 4gpa_A 365 KVGYWNDMDKLV 376 (389)
T ss_dssp EEEEEETTTEEE
T ss_pred EEEEEECCCCeE
Confidence 999999988865
No 7
>3om0_A Glutamate receptor, ionotropic kainate 5; membrane protein, ION channel; HET: NAG BMA GOL; 1.40A {Rattus norvegicus} PDB: 3om1_A* 3qlu_A* 3qlv_A
Probab=100.00 E-value=7.5e-37 Score=334.72 Aligned_cols=283 Identities=17% Similarity=0.267 Sum_probs=230.0
Q ss_pred ccceEEEEcCCChhh-HHHHHHhccCCCccEEeeeCCCCCCCCCCCCCCeE--EEecCChHHHHHHHHHHHhhcCceEEE
Q 003821 4 EKEVKVIVGMETWGA-ATMVADIGSRAQVPVLSFAEPAIAPPLTSTRWPFL--VRMANSSAEQITCTAALVGSYNWRKVI 80 (793)
Q Consensus 4 ~~~V~aiiGp~~s~~-~~~va~i~~~~~iP~Is~~~~~~~~~l~~~~~~~~--~r~~p~~~~~~~ai~~ll~~~~w~~va 80 (793)
+++|.|||||.+|+. +.+++++++.++||+|+++++ + .....+|++ ||+.|++..|+.+++++++++||++|+
T Consensus 68 ~~~V~aiiG~~~S~~~~~a~~~i~~~~~ip~is~~a~--~--~~~~~~~~~~~fr~~p~~~~~~~~~~~~~~~~g~~~va 143 (393)
T 3om0_A 68 PKGVVSVLGPSSSPASASTVSHICGEKEIPHIKVGPE--E--TPRLQYLRFASVSLYPSNEDVSLAVSRILKSFNYPSAS 143 (393)
T ss_dssp GGCCSCEECCSSCHHHHHHHHHHHHHHTCCEEECSCC--C--CC----CCSCCEESSCCHHHHHHHHHHHHHHTTSCCEE
T ss_pred hcCcEEEECCCCchhHHHHHHHHHhccCCCeEeccCC--c--CccccccccceEEecCCHHHHHHHHHHHHHhCCCcEEE
Confidence 568999999999965 579999999999999999877 3 123567888 999999999999999999999999999
Q ss_pred EEEEcCCCccccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcCCceEEEEeccChHHHHHHHHHH
Q 003821 81 IIYEDDATNADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRTESRVFIILQSSLAMGIHLFREA 160 (793)
Q Consensus 81 ii~~dd~~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivvl~~~~~~~~~~l~~a 160 (793)
+||+|++|| ..+.+.+ +.+++.|+++.... ++ .. .|+..++.+|+++++|+|++ ++..+++..++++|
T Consensus 144 ii~~~~~~g--~~l~~~~-~~~~~~g~~v~~~~-~~-~~------~d~~~~l~~i~~~~~~vii~-~~~~~~~~~~~~~a 211 (393)
T 3om0_A 144 LICAKAECL--LRLEELV-RGFLISKETLSVRM-LD-DS------RDPTPLLKEIRDDKVSTIII-DANASISHLVLRKA 211 (393)
T ss_dssp EEESSTTHH--HHTHHHH-HHHHHSSSCEEEEE-CC--C------CCSHHHHHHHHHHTCSEEEE-ESCHHHHHHHHHHH
T ss_pred EEEeCchHH--HHHHHHH-HhhhccCCeEEEEe-cC-CC------CCHHHHHHHHHhcCCeEEEE-ECCHHHHHHHHHHH
Confidence 999999998 7765555 45677899987553 42 32 46788999999999999999 99999999999999
Q ss_pred HHcCCCCCCeEEEEeCCcccc-------------ceeecccccCCchhhhHHHHHHHHhhhhcCCCCCCCCcchhhHhHh
Q 003821 161 KEMGLVGPDSVWVIASDTITS-------------ALGIKTHFSQDSSSYKIFEDQFRSYFRSEYPEDDVSEPGIYALRAY 227 (793)
Q Consensus 161 ~~~g~~~~~~~wi~~~~~~~~-------------~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~a~~~Y 227 (793)
+++||.++.|+|+++ ++... +.++..+.+ .+|.+++|.++|+++|+..+.......|+.+++++|
T Consensus 212 ~~~g~~~~~~~~i~~-~~~~~~~~l~~~~~~~~~~~g~~~~~~-~~~~~~~f~~~~~~~~~~~~~~~~~~~p~~~a~~~Y 289 (393)
T 3om0_A 212 SELGMTSAFYKYILT-TMDFPILHLDGIVEDSSNILGFSMFNT-SHPFYPEFVRSLNMSWRENCEASTYPGPALSAALMF 289 (393)
T ss_dssp HHTTTTSTTCEEEEC-CTTGGGCCCTTTCCSSCSEEEEECCCT-TSTTHHHHHHHHHHHHTTTSCGGGCCSCCHHHHHHH
T ss_pred HHcCcccCCeEEEEe-cccccccchhhhhccCCcEEEEEEecC-CccHHHHHHHHHHHHhhhhccCCCCCCCchHHHHHH
Confidence 999999999999998 55432 333333322 357889999999999875332222235788999999
Q ss_pred HHHHHHHHHHhhccC---------------CCCChhhHHHhhhhcccccceeeEEEeCCCcCCCCcEEEEEeecceeEEE
Q 003821 228 DSITVVAKSIDGMTS---------------DNSSSKISLGYILSSNFTGLSGPISFRGGKLLNSPILRIINMVGKKYKEI 292 (793)
Q Consensus 228 DAv~~la~Al~~~~~---------------~~~~g~~l~~~l~~~~f~G~tG~i~Fd~~g~~~~~~~~I~~~~~~~~~~V 292 (793)
||++++++|++++++ .|.+|..|.++|++++|+|++|+++||++|++.++.|+|+++.++++++|
T Consensus 290 DAv~~la~Al~~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~f~G~tG~i~fd~~G~~~~~~~~i~~~~~~g~~~V 369 (393)
T 3om0_A 290 DAVHVVVSAVRELNRSQEIGVKPLACTSANIWPHGTSLMNYLRMVEYDGLTGRVEFNSKGQRTNYTLRILEKSRQGHREI 369 (393)
T ss_dssp HHHHHHHHHHHHHTTTSCCCCCCCCTTCCCCCTTHHHHHHHHTTCCEEETTEEECBCTTSCBCSCEEEEEEEETTEEEEE
T ss_pred hHHHHHHHHHHHHhhcccCcCCCcCCCCCCcccCchHHHHHHHhCCCCCccceEEeCCCCcccceeEEEEEeccCCceEe
Confidence 999999999999874 13689999999999999999999999999999889999999999999999
Q ss_pred EEecCCCCCccc
Q 003821 293 DFWLPKFGLSKT 304 (793)
Q Consensus 293 G~w~~~~g~~~~ 304 (793)
|+|++..|++.+
T Consensus 370 G~w~~~~gl~~~ 381 (393)
T 3om0_A 370 GVWYSNRTLAMN 381 (393)
T ss_dssp EEEECC------
T ss_pred eeEcCCCCcccc
Confidence 999999887643
No 8
>1jdp_A NPR-C, atrial natriuretic peptide clearance receptor; hormone-receptor complex, natriuretic peptide receptor, ALLO activation, signaling protein; HET: NDG NAG; 2.00A {Homo sapiens} SCOP: c.93.1.1 PDB: 1jdn_A* 1yk0_A* 1yk1_A*
Probab=100.00 E-value=3.9e-35 Score=326.31 Aligned_cols=279 Identities=16% Similarity=0.170 Sum_probs=235.0
Q ss_pred cceEEEEcCCChhhHHHHHHhccCCCccEEeeeCCCCCCCCCCC--CCCeEEEecCChHHHHHHHHHHHhhcCceEEEEE
Q 003821 5 KEVKVIVGMETWGAATMVADIGSRAQVPVLSFAEPAIAPPLTST--RWPFLVRMANSSAEQITCTAALVGSYNWRKVIII 82 (793)
Q Consensus 5 ~~V~aiiGp~~s~~~~~va~i~~~~~iP~Is~~~~~~~~~l~~~--~~~~~~r~~p~~~~~~~ai~~ll~~~~w~~vaii 82 (793)
++|.|||||.+|..+.+++++++.+++|+|+++++ ++.+++. .+||+||+.|++..|+.++++++++|||+||++|
T Consensus 83 ~~v~aiiG~~~S~~~~~v~~~~~~~~ip~is~~~~--~~~ls~~~~~~~~~fr~~p~~~~~~~a~~~~~~~~~w~~v~ii 160 (441)
T 1jdp_A 83 AKPDLILGPVCEYAAAPVARLASHWDLPMLSAGAL--AAGFQHKDSEYSHLTRVAPAYAKMGEMMLALFRHHHWSRAALV 160 (441)
T ss_dssp CCCSEEECCCSHHHHHHHHHHHHHHTCCEEESCCC--SGGGGCTTTTTTTEEECSCCHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCceEEECCCchhhHHHHHHHHhhcCCcEEcCCCC--chhhccccccCCceEEecCcHHHHHHHHHHHHHhcCCcEEEEE
Confidence 48999999999999999999999999999999999 8888764 6999999999999999999999999999999999
Q ss_pred EEcCCCccccc---cHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcCCceEEEEeccChHHHHHHHHH
Q 003821 83 YEDDATNADTG---NLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRTESRVFIILQSSLAMGIHLFRE 159 (793)
Q Consensus 83 ~~dd~~G~~~~---~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivvl~~~~~~~~~~l~~ 159 (793)
|+|++|| .. .++.+++.+++.|+||+....++... .++...+.+|+ +++|||++ ++..+++..++++
T Consensus 161 ~~d~~~g--~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~------~d~~~~l~~i~-~~~~vii~-~~~~~~~~~~~~~ 230 (441)
T 1jdp_A 161 YSDDKLE--RNCYFTLEGVHEVFQEEGLHTSIYSFDETKD------LDLEDIVRNIQ-ASERVVIM-CASSDTIRSIMLV 230 (441)
T ss_dssp EECCSSS--CHHHHHHHHHHHHHHHHTCEEEEEEECTTSC------CCHHHHHHHHH-HHCSEEEE-ESCHHHHHHHHHH
T ss_pred EEcCCcc--cchHHHHHHHHHHHHhcCcEEEEEEecCCcc------cCHHHHHHHhh-cCCcEEEE-ecCHHHHHHHHHH
Confidence 9999999 98 89999999999999998876655433 35788899999 89999998 8999999999999
Q ss_pred HHHcCCCCCCeEEEEeCCc----------c-cc-------------ceeecccccCCchhhhHHHHHHHHhhhhc-CCCC
Q 003821 160 AKEMGLVGPDSVWVIASDT----------I-TS-------------ALGIKTHFSQDSSSYKIFEDQFRSYFRSE-YPED 214 (793)
Q Consensus 160 a~~~g~~~~~~~wi~~~~~----------~-~~-------------~~g~~~~~~~~~~~~~~f~~~~~~~~~~~-~~~~ 214 (793)
++++||.++.++||.+ ++ + .. +.|+..+.+ ..|.+++|.++|+++++.. +. .
T Consensus 231 ~~~~gl~~~~~v~i~~-~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~g~~~~~~-~~p~~~~F~~~~~~~~~~~~~~-~ 307 (441)
T 1jdp_A 231 AHRHGMTSGDYAFFNI-ELFNSSSYGDGSWKRGDKHDFEAKQAYSSLQTVTLLRT-VKPEFEKFSMEVKSSVEKQGLN-M 307 (441)
T ss_dssp HHHTTCTTTTCEEEEE-CSSCCCSTTTCTTCCSSTTHHHHHHHGGGEEEEEECCC-CCHHHHHHHHHHHHHHHTTTCC-C
T ss_pred HHHcCCCCCCEEEEEE-eccccccccCCCCccCCcccHHHHHHHHhheEEeecCC-CCchHHHHHHHHHHHHhhCCCC-c
Confidence 9999999888999988 52 1 10 223332222 3488999999998875432 11 0
Q ss_pred CCCCcchhhHhHhHHHHHHHHHHhhcc---CCCCChhhHHHhhhhcccccceeeEEEeCCCcCCCCcEEEEEee---cce
Q 003821 215 DVSEPGIYALRAYDSITVVAKSIDGMT---SDNSSSKISLGYILSSNFTGLSGPISFRGGKLLNSPILRIINMV---GKK 288 (793)
Q Consensus 215 ~~~~~~~~a~~~YDAv~~la~Al~~~~---~~~~~g~~l~~~l~~~~f~G~tG~i~Fd~~g~~~~~~~~I~~~~---~~~ 288 (793)
...++.+++.+||||+++|+|++++. ..+.++.+|.++|++++|.|++|+++||++|++. ..|.|++++ ++.
T Consensus 308 -~~~~~~~~~~~YdAv~~~A~Al~~~~~~~~~~~~~~~l~~~l~~~~f~g~~G~v~fd~~Gd~~-~~~~I~~~~~~~~g~ 385 (441)
T 1jdp_A 308 -EDYVNMFVEGFHDAILLYVLALHEVLRAGYSKKDGGKIIQQTWNRTFEGIAGQVSIDANGDRY-GDFSVIAMTDVEAGT 385 (441)
T ss_dssp -CSSCCHHHHHHHHHHHHHHHHHHHHHHTTCCTTCHHHHHHHHSSEEEEETTEEEEECTTSBBC-CEEEEEEEEETTTTE
T ss_pred -cchhhhHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhCCeeECCccceEECCCCCcc-ccEEEEecccCCCCc
Confidence 11356688999999999999999983 3335789999999999999999999999999974 789999986 356
Q ss_pred eEEEEEecCCCC
Q 003821 289 YKEIDFWLPKFG 300 (793)
Q Consensus 289 ~~~VG~w~~~~g 300 (793)
+++||.|++..+
T Consensus 386 ~~~VG~~~~~~~ 397 (441)
T 1jdp_A 386 QEVIGDYFGKEG 397 (441)
T ss_dssp EEEEEEEETTTT
T ss_pred eEEEEEEcCCCC
Confidence 999999998654
No 9
>4f11_A Gamma-aminobutyric acid type B receptor subunit 2; venus flytrap module, G-protein coupled receptor, signaling; 2.38A {Homo sapiens} PDB: 4f12_A*
Probab=100.00 E-value=1.1e-35 Score=329.89 Aligned_cols=270 Identities=18% Similarity=0.237 Sum_probs=232.8
Q ss_pred cceEEEEcCCChhhHHHHHHhccCCCccEEeeeCCCCCCCCCC-CCCCeEEEecCChHHHHHHHHHHHhhcCceEEEEEE
Q 003821 5 KEVKVIVGMETWGAATMVADIGSRAQVPVLSFAEPAIAPPLTS-TRWPFLVRMANSSAEQITCTAALVGSYNWRKVIIIY 83 (793)
Q Consensus 5 ~~V~aiiGp~~s~~~~~va~i~~~~~iP~Is~~~~~~~~~l~~-~~~~~~~r~~p~~~~~~~ai~~ll~~~~w~~vaii~ 83 (793)
++|.|||||.+|..+.+++++++.++||+|+++++ ++.+++ ..+||+||+.|++..++.+++++++++||++|++||
T Consensus 84 ~~v~aviG~~~S~~~~a~~~~~~~~~ip~is~~~~--~~~l~~~~~~~~~fr~~~~~~~~~~~~~~~~~~~g~~~v~ii~ 161 (433)
T 4f11_A 84 PNHLMVFGGVCPSVTSIIAESLQGWNLVQLSFAAT--TPVLADKKKYPYFFRTVPSDNAVNPAILKLLKHYQWKRVGTLT 161 (433)
T ss_dssp CCCSEEEECCSHHHHHHHHHTHHHHTCEEEESSCC--CGGGGCTTTCTTEEESSCCGGGHHHHHHHHHHHTTCCEEEEEE
T ss_pred CceEEEECCCcchHHHHHHHHHHhcCceEEEcccC--CccccccccCCceEEecCchHHHHHHHHHHHHHcCCcEEEEEE
Confidence 48999999999999999999999999999999998 888876 468999999999999999999999999999999999
Q ss_pred EcCCCccccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcCCceEEEEeccChHHHHHHHHHHHHc
Q 003821 84 EDDATNADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRTESRVFIILQSSLAMGIHLFREAKEM 163 (793)
Q Consensus 84 ~dd~~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivvl~~~~~~~~~~l~~a~~~ 163 (793)
+|++|| ....+.+++.+++.|+||+....++. |+..++.+|+++++|+|++ ++..+++..++++|+++
T Consensus 162 ~~~~~g--~~~~~~~~~~~~~~g~~v~~~~~~~~---------d~~~~l~~i~~~~~~vii~-~~~~~~~~~~~~~a~~~ 229 (433)
T 4f11_A 162 QDVQRF--SEVRNDLTGVLYGEDIEISDTESFSN---------DPCTSVKKLKGNDVRIILG-QFDQNMAAKVFCCAYEE 229 (433)
T ss_dssp ESSHHH--HHHHHHHHHHSSSSSCEEEEEEEESS---------CCHHHHHHHHHTTCCEEEE-ECCHHHHHHHHHHHHHT
T ss_pred ecchhh--HHHHHHHHHHHHHcCceEEEEeccCc---------CHHHHHHHHhhCCCeEEEE-eCcHHHHHHHHHHHHHc
Confidence 999999 99999999999999999998887763 3567899999999999999 89999999999999999
Q ss_pred CCCCCCeEEEEeCCc----cc----------------------cceeecccccCC-------chhhhHHHHHHHHhhhhc
Q 003821 164 GLVGPDSVWVIASDT----IT----------------------SALGIKTHFSQD-------SSSYKIFEDQFRSYFRSE 210 (793)
Q Consensus 164 g~~~~~~~wi~~~~~----~~----------------------~~~g~~~~~~~~-------~~~~~~f~~~~~~~~~~~ 210 (793)
|+.+++++||.+ ++ +. .++++..+.+.. .+..++|.++|+++.
T Consensus 230 g~~~~~~~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~f~~~y~~~~--- 305 (433)
T 4f11_A 230 NMYGSKYQWIIP-GWYEPSWWEQVHTEANSSRCLRKNLLAAMEGYIGVDFEPLSSKQIKTISGKTPQQYEREYNNKR--- 305 (433)
T ss_dssp TCCSTTCEEEEE-SCSCTTTTTCC------CCSCHHHHHHHHTTCEEEEECSSCCCCCCCTTSCCHHHHHHHHHHHH---
T ss_pred CCCCCCeEEEEc-CcchHhHhcccccCCCCCCCCHHHHHHHHhCEEEEEEeecCCCCCcccCCCCHHHHHHHHHHhc---
Confidence 999988999999 55 21 034444332211 134678888888762
Q ss_pred CCCCCCCCcchhhHhHhHHHHHHHHHHhhccCC-----------------CCChhhHHHhhhhcccccceeeEEEeCCCc
Q 003821 211 YPEDDVSEPGIYALRAYDSITVVAKSIDGMTSD-----------------NSSSKISLGYILSSNFTGLSGPISFRGGKL 273 (793)
Q Consensus 211 ~~~~~~~~~~~~a~~~YDAv~~la~Al~~~~~~-----------------~~~g~~l~~~l~~~~f~G~tG~i~Fd~~g~ 273 (793)
.+..|+.+++++||||+++|+|+++++.. +.++..|.++|++++|+|++|+|+| ++|+
T Consensus 306 ----~~~~~~~~a~~~YDAv~~la~Al~~a~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~f~G~tG~v~f-~~Gd 380 (433)
T 4f11_A 306 ----SGVGPSKFHGYAYDGIWVIAKTLQRAMETLHASSRHQRIQDFNYTDHTLGRIILNAMNETNFFGVTGQVVF-RNGE 380 (433)
T ss_dssp ----TTSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCGGGCSSCCHHHHHHHHHHHHTCEEEETTEEEEE-ETTE
T ss_pred ----CCCCcccchhhHHHHHHHHHHHHHHHHHHHhccCCCCcccccccccHHHHHHHHHHHHhcEEEccceEEEE-ecCc
Confidence 13467788999999999999999998531 1247899999999999999999999 8999
Q ss_pred CCCCcEEEEEeecceeEEEEEecCC
Q 003821 274 LNSPILRIINMVGKKYKEIDFWLPK 298 (793)
Q Consensus 274 ~~~~~~~I~~~~~~~~~~VG~w~~~ 298 (793)
+. ..+.|++++++++++||.|++.
T Consensus 381 ~~-~~~~I~~~~~g~~~~VG~~~~~ 404 (433)
T 4f11_A 381 RM-GTIKFTQFQDSREVKVGEYNAV 404 (433)
T ss_dssp EE-CEEEEEEEETTEEEEEEEEETT
T ss_pred ee-eeEEEEEEECCceEEEEEEECC
Confidence 75 7999999999999999999864
No 10
>3qek_A NMDA glutamate receptor subunit; amino terminal domain, ION channel, NMDA receptor, allosteri modulation, phenylethanolamine, polyamine; HET: NAG BMA; 2.00A {Xenopus laevis} PDB: 3qel_A* 3qem_A* 3q41_A*
Probab=100.00 E-value=7.9e-35 Score=317.60 Aligned_cols=265 Identities=18% Similarity=0.254 Sum_probs=207.2
Q ss_pred CCcccceEEEEc-----CCChhhHHHHHHhccCCCccEEeeeCCCCCCCCCC-CCCCeEEEecCChHHHHHHHHHHHhhc
Q 003821 1 MIKEKEVKVIVG-----METWGAATMVADIGSRAQVPVLSFAEPAIAPPLTS-TRWPFLVRMANSSAEQITCTAALVGSY 74 (793)
Q Consensus 1 Li~~~~V~aiiG-----p~~s~~~~~va~i~~~~~iP~Is~~~~~~~~~l~~-~~~~~~~r~~p~~~~~~~ai~~ll~~~ 74 (793)
|++ ++|.|||| |.+|..+.+++++++.+++|+|+++++ ++.+++ ..+||+||+.|++..|+.+++++++++
T Consensus 61 Li~-~~V~aiiG~~~~~~~~s~~~~a~~~~~~~~~iP~is~~~~--~~~ls~~~~~~~~fr~~~~~~~~~~a~~~~~~~~ 137 (384)
T 3qek_A 61 LIS-SQVYAILVSHPPAPTDHLTPTPISYTAGFYRIPVIGLTTR--MSIYSDKSIHLSFLRTVPPYSHQALVWFEMMRLF 137 (384)
T ss_dssp TGG-GTEEEEEECC--------CCHHHHHHHHTTTCCEEESSCC--CGGGGCSSSCTTEEESSCCGGGHHHHHHHHHHHT
T ss_pred HHH-cCceEEEEecCCCCccchhHHHHHHHHhcCCCCEEecccC--chhccCcccCCceEEecCChHHHHHHHHHHHHHc
Confidence 455 48999999 678889999999999999999999988 788874 568999999999999999999999999
Q ss_pred CceEEEEEEEcCCCccccccHHHHHHHHHhcCcee-----------eEE-------e---ecCCCCCCCCChHHHHHHHH
Q 003821 75 NWRKVIIIYEDDATNADTGNLALLSEALQISNSEI-----------EYR-------L---VLPPISYLTDPKQFLQEKLL 133 (793)
Q Consensus 75 ~w~~vaii~~dd~~G~~~~~~~~l~~~l~~~g~~v-----------~~~-------~---~~~~~~~~~~~~~~~~~~l~ 133 (793)
||+||++||+|++|| .++.+.|++++++.|+++ .+. . .+.... .|+...|.
T Consensus 138 gw~~v~ii~~d~~~G--~~~~~~~~~~~~~~g~~v~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~------~d~~~~l~ 209 (384)
T 3qek_A 138 NWNHVILIVSDDHEG--RAAQKKLETLLEGKESKSKKRNYENLDQLSYDNKRGPKADKVLQFEPGT------KNLTALLL 209 (384)
T ss_dssp TCCEEEEEEESSHHH--HHHHHHHHHHHC--------------CCSCCCCCCCCEEEEEEEECTTC------SCCHHHHH
T ss_pred CCeEEEEEEEcCccc--HHHHHHHHHHHHhccCccccccccccceeeeccccCcccceecccCCch------hhHHHHHH
Confidence 999999999999999 999999999999999743 211 1 122222 46888999
Q ss_pred HhhcCCceEEEEeccChHHHHHHHHHHHHcCCCCCCeEEEEeCCccccceeecccccCCchhhhHHHHHHHHhhhhcCCC
Q 003821 134 KLLRTESRVFIILQSSLAMGIHLFREAKEMGLVGPDSVWVIASDTITSALGIKTHFSQDSSSYKIFEDQFRSYFRSEYPE 213 (793)
Q Consensus 134 ~l~~~~~~vivvl~~~~~~~~~~l~~a~~~g~~~~~~~wi~~~~~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~ 213 (793)
+++++++|+||+ ++..+++..++++|+++||.+++++||.+ ++......+.. .....-.+.
T Consensus 210 ~i~~~~~~vii~-~~~~~~~~~~~~~a~~~g~~~~~~~~i~~-~~~~~~~~~~~-~~~g~lg~~---------------- 270 (384)
T 3qek_A 210 EAKELEARVIIL-SASEDDATAVYKSAAMLDMTGAGYVWLVG-EREISGSALRY-APDGIIGLQ---------------- 270 (384)
T ss_dssp HHHTSSCCEEEE-ECCHHHHHHHHHHHHHTTCSSTTCEEECC-SGGGSGGGGSS-CCTTCEEEE----------------
T ss_pred HHHhcCCcEEEE-ECCHHHHHHHHHHHHHcCCccCCeEEEEe-ccccccccccc-cCCccEEEE----------------
Confidence 999999999999 99999999999999999999988999999 54322100000 000000000
Q ss_pred CCCCCcchhhHhHhHHHHHHHHHHhhccC----------------CCCChhhHHHhhhhccc-ccceeeEEEeCCCcCCC
Q 003821 214 DDVSEPGIYALRAYDSITVVAKSIDGMTS----------------DNSSSKISLGYILSSNF-TGLSGPISFRGGKLLNS 276 (793)
Q Consensus 214 ~~~~~~~~~a~~~YDAv~~la~Al~~~~~----------------~~~~g~~l~~~l~~~~f-~G~tG~i~Fd~~g~~~~ 276 (793)
...+...++.+||||+++|+|++++.. .|..+..|.+.+++++| +|++|+++||++|++.+
T Consensus 271 --~~~~~~~~~~~YdAV~~~a~Al~~~~~~~~~~~~~~~c~~~~~~~~~~~~l~~~~~~~~f~~G~~G~v~fd~~G~~~~ 348 (384)
T 3qek_A 271 --LINGKNESAHISDAVAVVAQAIHELFEMENITDPPRGCVGNTNIWKTGPLFKRVLMSSKYPDGVTGRIEFNEDGDRKF 348 (384)
T ss_dssp --ETTTTCHHHHHHHHHHHHHHHHHHHHTSSSCCCCCSCCTTCCCCCTTHHHHHHHHHTCCEEEETTEEECBCTTSCBCS
T ss_pred --EcCCCchhHHHHHHHHHHHHHHHHHHhccCCCCCCCccccCCCccccHHHHHHHHhcCCccCCCCcceEECCCCCCCc
Confidence 011233478999999999999998742 23467789999999998 99999999999999878
Q ss_pred CcEEEEEeecceeEEEEEecC
Q 003821 277 PILRIINMVGKKYKEIDFWLP 297 (793)
Q Consensus 277 ~~~~I~~~~~~~~~~VG~w~~ 297 (793)
..|+|++++++++++||.|+.
T Consensus 349 ~~~~I~~~~~~~~~~VG~w~~ 369 (384)
T 3qek_A 349 AQYSIMNLQNRKLVQVGIFNG 369 (384)
T ss_dssp CCEEEEEEETTEEEEEEEECS
T ss_pred ccEEEEEEcCCceEEEEEEeC
Confidence 999999999999999999983
No 11
>1dp4_A Atrial natriuretic peptide receptor A; periplasmic binding protein fold, dimer, hormone/growth FACT receptor, lyase complex; HET: NAG; 2.00A {Rattus norvegicus} SCOP: c.93.1.1 PDB: 1t34_A* 3a3k_A*
Probab=100.00 E-value=3.4e-34 Score=318.26 Aligned_cols=282 Identities=16% Similarity=0.140 Sum_probs=229.6
Q ss_pred cccceEEEEcCCChhhHHHHHHhccCCCccEEeeeCCCCCCCCCCC-CCCeEEEecCChHHHHHHHHHHHhhcCceEEEE
Q 003821 3 KEKEVKVIVGMETWGAATMVADIGSRAQVPVLSFAEPAIAPPLTST-RWPFLVRMANSSAEQITCTAALVGSYNWRKVII 81 (793)
Q Consensus 3 ~~~~V~aiiGp~~s~~~~~va~i~~~~~iP~Is~~~~~~~~~l~~~-~~~~~~r~~p~~~~~~~ai~~ll~~~~w~~vai 81 (793)
.+++|.|||||.+|..+.+++++++.++||+|+++++ ++.+++. .+||+||+.|++..|+.+++++++++||+||++
T Consensus 74 ~~~~v~aviG~~~S~~~~av~~~~~~~~ip~is~~~~--~~~ls~~~~~~~~fr~~p~~~~~~~a~~~~l~~~~w~~v~i 151 (435)
T 1dp4_A 74 WEHSPAVFLGPGCVYSAAPVGRFTAHWRVPLLTAGAP--ALGIGVKDEYALTTRTGPSHVKLGDFVTALHRRLGWEHQAL 151 (435)
T ss_dssp HHHCCSEEECCCSHHHHHHHHHHHHHHTCCEEESCCC--CGGGGCTTTSTTEEECSCCHHHHHHHHHHHHHHHTCCSEEE
T ss_pred HhcCceEEECCCChHHHHHHHHHHHhcCCcEEccccc--ccccCcccccCeEEEecCcHHHHHHHHHHHHHHCCCcEEEE
Confidence 4568999999999999999999999999999999998 8888764 599999999999999999999999999999999
Q ss_pred E------EEcCCCccccccHHHHHHHHHh-cCceeeEEeecCCCCCCCCChHHHHHHHHHhhcCCceEEEEeccChHHHH
Q 003821 82 I------YEDDATNADTGNLALLSEALQI-SNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRTESRVFIILQSSLAMGI 154 (793)
Q Consensus 82 i------~~dd~~G~~~~~~~~l~~~l~~-~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivvl~~~~~~~~ 154 (793)
| ++|++|| .. ++.+.+.+++ .|+||+....++... .++...+.+|++ ++|+||+ ++..+++.
T Consensus 152 i~~~d~~~~~~~~g--~~-~~~~~~~~~~~~g~~v~~~~~~~~~~------~d~~~~l~~i~~-~~~viv~-~~~~~~~~ 220 (435)
T 1dp4_A 152 VLYADRLGDDRPCF--FI-VEGLYMRVRERLNITVNHQEFVEGDP------DHYPKLLRAVRR-KGRVIYI-CSSPDAFR 220 (435)
T ss_dssp EEEECCSSSCCHHH--HH-HHHHHHHHHHHHCCEEEEEEECTTCG------GGHHHHHHHHHH-HCSEEEE-ESCHHHHH
T ss_pred EEEccCCCCcchHH--HH-HHHHHHHHHhhcCeEEEEEEEecCch------hhHHHHHHHHHh-hCceEEE-ecChHHHH
Confidence 9 5666666 54 4567777877 999998876654333 578999999998 8999998 89999999
Q ss_pred HHHHHHHHcCCCCCCeEEEEeCCcccc------------------------------ceeecccccCCchhhhHHHHHHH
Q 003821 155 HLFREAKEMGLVGPDSVWVIASDTITS------------------------------ALGIKTHFSQDSSSYKIFEDQFR 204 (793)
Q Consensus 155 ~~l~~a~~~g~~~~~~~wi~~~~~~~~------------------------------~~g~~~~~~~~~~~~~~f~~~~~ 204 (793)
.++++|+++|+.+++++||.+ ++... ++.+.+..+ .++.+++|.++|+
T Consensus 221 ~~~~~a~~~g~~~~~~~~i~~-~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~f~~~~~ 298 (435)
T 1dp4_A 221 NLMLLALNAGLTGEDYVFFHL-DVFGQSLKSAQGLVPQKPWERGDGQDRSARQAFQAAKIITYKEP-DNPEYLEFLKQLK 298 (435)
T ss_dssp HHHHHHHHTTCCTTTCEEEEE-CTTCTTSCSSCTTSCBCTTCCSSSCHHHHHHHGGGEEEEEECCC-CSHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCEEEEEE-ecccccccccccccccCCcccCCcchHHHHHHhheeEEEecCCC-CChhHHHHHHHHH
Confidence 999999999998878999998 44321 111222222 3477888998888
Q ss_pred HhhhhcC-CCCCCCCcchhhHhHhHHHHHHHHHHhhcc---CCCCChhhHHHhhhhcccccceeeEEEeCCCcCCCCcEE
Q 003821 205 SYFRSEY-PEDDVSEPGIYALRAYDSITVVAKSIDGMT---SDNSSSKISLGYILSSNFTGLSGPISFRGGKLLNSPILR 280 (793)
Q Consensus 205 ~~~~~~~-~~~~~~~~~~~a~~~YDAv~~la~Al~~~~---~~~~~g~~l~~~l~~~~f~G~tG~i~Fd~~g~~~~~~~~ 280 (793)
+.++... .......++.+++++||||+++|+||+++. ....+++.|.++|++++|+|++|+++||++|++. ..|.
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~ydav~~~a~Al~~~~~~~~~~~~~~~l~~~l~~~~f~g~~G~v~fd~~g~~~-~~~~ 377 (435)
T 1dp4_A 299 LLADKKFNFTVEDGLKNIIPASFHDGLLLYVQAVTETLAQGGTVTDGENITQRMWNRSFQGVTGYLKIDRNGDRD-TDFS 377 (435)
T ss_dssp HHHHHHHCCCCCCSGGGHHHHHHHHHHHHHHHHHHHHHHTTCCTTCHHHHHHTTTTEEEEETTEEEEECTTSBBC-CCEE
T ss_pred HHhcCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHhCceeeccceeEEECCCCCcc-ceeE
Confidence 7764311 000112367789999999999999999982 2235789999999999999999999999999975 6999
Q ss_pred EEEe--ecceeEEEEEecCCCC
Q 003821 281 IINM--VGKKYKEIDFWLPKFG 300 (793)
Q Consensus 281 I~~~--~~~~~~~VG~w~~~~g 300 (793)
|+++ .++.+++||.|++..+
T Consensus 378 i~~~~~~~g~~~~vg~~~~~~~ 399 (435)
T 1dp4_A 378 LWDMDPETGAFRVVLNYNGTSQ 399 (435)
T ss_dssp EEEECTTTCCEEEEEEECTTTC
T ss_pred EEEecCCCCcEEEEEEecCCCc
Confidence 9999 5567999999998653
No 12
>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor, neuron, central nerve system, SI protein; HET: NAG GLU; 2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A* 2e4y_A*
Probab=100.00 E-value=3.2e-33 Score=319.08 Aligned_cols=281 Identities=15% Similarity=0.220 Sum_probs=228.7
Q ss_pred ccceEEEEcCCChhhHHHHHHhccCCCccEEeeeCCCCCCCCCC-CCCCeEEEecCChHHHHHHHHHHHhhcCceEEEEE
Q 003821 4 EKEVKVIVGMETWGAATMVADIGSRAQVPVLSFAEPAIAPPLTS-TRWPFLVRMANSSAEQITCTAALVGSYNWRKVIII 82 (793)
Q Consensus 4 ~~~V~aiiGp~~s~~~~~va~i~~~~~iP~Is~~~~~~~~~l~~-~~~~~~~r~~p~~~~~~~ai~~ll~~~~w~~vaii 82 (793)
+++|.|||||.+|..+.+++++++.+++|+|+++++ ++.|++ .++|||||+.|++..|+.++++++++|||+||++|
T Consensus 115 ~~~v~aviG~~~S~~s~~va~~~~~~~iP~Is~~a~--~~~lsd~~~~p~~fr~~p~d~~~~~a~~~ll~~fgw~~V~ii 192 (555)
T 2e4u_A 115 PLLIAGVIGGSYSSVSIQVANLLRLFQIPQISYAST--SAKLSDKSRYDYFARTVPPDFYQAKAMAEILRFFNWTYVSTV 192 (555)
T ss_dssp CCCEEEEEECSSHHHHHHHHHHHGGGTCCEEESSCC--CGGGGCTTTCTTEEESSCCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCceEEEECCCCcHHHHHHHHHHhCcCCceEeCCcC--CCccCCcccCCCceeeCCChHHHHHHHHHHHHHcCCeEEEEE
Confidence 578999999999999999999999999999999999 888886 47999999999999999999999999999999999
Q ss_pred EEcCCCccccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhc-CCceEEEEeccChHHHHHHHHHHH
Q 003821 83 YEDDATNADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLR-TESRVFIILQSSLAMGIHLFREAK 161 (793)
Q Consensus 83 ~~dd~~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~-~~~~vivvl~~~~~~~~~~l~~a~ 161 (793)
++||+|| ..+.+.|++++++.|+||+....++... ...++...+.++++ ++++|||+ ++..+++..++++++
T Consensus 193 ~~d~~~g--~~~~~~~~~~~~~~gi~v~~~~~~~~~~----~~~~~~~~l~~i~~~s~a~vIi~-~~~~~~~~~~~~~~~ 265 (555)
T 2e4u_A 193 ASEGDYG--ETGIEAFEQEARLRNICIATAEKVGRSN----IRKSYDSVIRELLQKPNARVVVL-FMRSDDSRELIAAAN 265 (555)
T ss_dssp EESSTTH--HHHHHHHHHHHHTTTCEEEEEEEECTTC----CHHHHHHHHHHHHTCTTCCEEEE-ECCHHHHHHHHHHHH
T ss_pred EeeChHH--HHHHHHHHHHHHHCCccEEEEEEeCCCC----ChHHHHHHHHHHhccCCCCEEEE-EcCHHHHHHHHHHHH
Confidence 9999999 9999999999999999999888887522 23678899999965 69999999 899999999999999
Q ss_pred HcCCCCCCeEEEEeCCcccc-------------ceeecccccC--------------CchhhhHHHHHHHHhhhhcCCC-
Q 003821 162 EMGLVGPDSVWVIASDTITS-------------ALGIKTHFSQ--------------DSSSYKIFEDQFRSYFRSEYPE- 213 (793)
Q Consensus 162 ~~g~~~~~~~wi~~~~~~~~-------------~~g~~~~~~~--------------~~~~~~~f~~~~~~~~~~~~~~- 213 (793)
++|+ +++||.++.|... ++++..+... ..|....|.+.|++.|++..+.
T Consensus 266 ~~g~---~~~~i~s~~~~~~~~~~~~~~~~~~G~l~~~~~~~~ipgf~~f~~~~~p~~~p~~~~~~~~w~~~f~c~~~~~ 342 (555)
T 2e4u_A 266 RVNA---SFTWVASDGWGAQESIVKGSEHVAYGAITLELASHPVRQFDRYFQSLNPYNNHRNPWFRDFWEQKFQCSLQNK 342 (555)
T ss_dssp HTTC---CCEEEECTTTTTCGGGTTTCHHHHTTCEEEEECCCCCHHHHHHHHTCCTTTCTTCTTHHHHHHHHTTCCCC--
T ss_pred HhcC---CeEEEEeccccccchhhccchhhcceEEEEEeccCCCCcHHHHHhhCCcccCCCCHHHHHHHHHHcCCCCCCC
Confidence 9998 5799998434321 2333322111 1122334566677777764221
Q ss_pred ------CCC--------CCcchhhHhHhHHHHHHHHHHhhccCC-------------CCChhhHHH-hhhhcccc-----
Q 003821 214 ------DDV--------SEPGIYALRAYDSITVVAKSIDGMTSD-------------NSSSKISLG-YILSSNFT----- 260 (793)
Q Consensus 214 ------~~~--------~~~~~~a~~~YDAv~~la~Al~~~~~~-------------~~~g~~l~~-~l~~~~f~----- 260 (793)
+.+ ..+..+++.+||||+++|+||++++.. ..++++|.+ +|++++|.
T Consensus 343 ~~~~~~C~~~e~l~~~~~~~~~~~~~~YdAVya~A~AL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~v~f~~~~~~ 422 (555)
T 2e4u_A 343 RNHRQVCDKHLAIDSSNYEQESKIMFVVNAVYAMAHALHKMQRTLCPQTTKLCDAMKILDGKKLYKEYLLKIQFTAPFNP 422 (555)
T ss_dssp ----CCCCTTCCCCTTTCCCCTTHHHHHHHHHHHHHHHHHHHHHHCTTCSSCCGGGTSCCHHHHHHHHTTCEEECCSSSC
T ss_pred CccCCCCCCccccccccccccccchhhHHHHHHHHHHHHHHHhhhcCCCCccccccCCCCcccccHHhHhceeecccccc
Confidence 100 114567899999999999999988531 146788998 99999999
Q ss_pred -cceee-EEEeCCCcCCCCcEEEEEee--cc--eeEEEEEecC
Q 003821 261 -GLSGP-ISFRGGKLLNSPILRIINMV--GK--KYKEIDFWLP 297 (793)
Q Consensus 261 -G~tG~-i~Fd~~g~~~~~~~~I~~~~--~~--~~~~VG~w~~ 297 (793)
|.+|+ +.||++|++ ...|+|++++ ++ .+++||.|++
T Consensus 423 ~g~~G~~v~fd~~Gd~-~~~y~I~~~~~~~g~~~~~~VG~~~~ 464 (555)
T 2e4u_A 423 NKGADSIVKFDTFGDG-MGRYNVFNLQQTGGKYSYLKVGHWAE 464 (555)
T ss_dssp CSSSCCEEECCTTSCC-CCCEEEEEEECTTSSCEEEEEEEESS
T ss_pred cCCCCCeEEEcCCCCc-cceEEEEEEEecCCcEEEEEEEEecc
Confidence 99997 999999997 4799999995 23 5899999985
No 13
>3sm9_A Mglur3, metabotropic glutamate receptor 3; structural genomics, structural genomics consortium, SGC, CE membrane, G-protein coupled receptor; HET: Z99; 2.26A {Homo sapiens}
Probab=100.00 E-value=2.2e-33 Score=313.50 Aligned_cols=278 Identities=15% Similarity=0.207 Sum_probs=225.3
Q ss_pred cceEEEEcCCChhhHHHHHHhccCCCccEEeeeCCCCCCCCCC-CCCCeEEEecCChHHHHHHHHHHHhhcCceEEEEEE
Q 003821 5 KEVKVIVGMETWGAATMVADIGSRAQVPVLSFAEPAIAPPLTS-TRWPFLVRMANSSAEQITCTAALVGSYNWRKVIIIY 83 (793)
Q Consensus 5 ~~V~aiiGp~~s~~~~~va~i~~~~~iP~Is~~~~~~~~~l~~-~~~~~~~r~~p~~~~~~~ai~~ll~~~~w~~vaii~ 83 (793)
++|+|||||.+|+.+.+++++++.+++|+|+++++ +|.+++ .++||+||+.|++..|+.++++++++|||+||++|+
T Consensus 115 ~~v~aviG~~~S~~s~ava~i~~~~~iP~Is~~a~--~~~lsd~~~~p~~fr~~psd~~~~~a~~~ll~~fgw~~V~ii~ 192 (479)
T 3sm9_A 115 LLIAGVIGGSYSSVSIQVANLLRLFQIPQISYAST--SAKLSDKSRYDYFARTVPPDFYQAKAMAEILRFFNWTYVSTVA 192 (479)
T ss_dssp -CEEEEECCSSHHHHHHHHHHHGGGTCCEEESSCC--CGGGGCTTTTTTEEESSCCTHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CceEEEECCCCcHHHHHHHHHHhcCCccEECCCcC--CccccCcccCCCeEEeCCcHHHHHHHHHHHHHHCCCeEEEEEE
Confidence 57999999999999999999999999999999999 899986 469999999999999999999999999999999999
Q ss_pred EcCCCccccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHH-HHhhcCCceEEEEeccChHHHHHHHHHHHH
Q 003821 84 EDDATNADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKL-LKLLRTESRVFIILQSSLAMGIHLFREAKE 162 (793)
Q Consensus 84 ~dd~~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l-~~l~~~~~~vivvl~~~~~~~~~~l~~a~~ 162 (793)
+||+|| ..+++.|++++++.|+||+....++... ...++..++ +.+++++++|||+ ++..+++..+++++++
T Consensus 193 ~dd~~G--~~~~~~~~~~~~~~Gi~v~~~~~i~~~~----~~~d~~~~l~~~i~~s~a~vIi~-~~~~~~~~~l~~~~~~ 265 (479)
T 3sm9_A 193 SEGDYG--ETGIEAFEQEARLRNISIATAEKVGRSN----IRKSYDSVIRELLQKPNARVVVL-FMRSDDSRELIAAASR 265 (479)
T ss_dssp ESSHHH--HHHHHHHHHHHHTTTCEEEEEEEECC------CHHHHHHHHHHHHTCTTCCEEEE-ECCHHHHHHHHHHHHH
T ss_pred ecchhh--HHHHHHHHHHHHHCCceEEEEEEcCCCC----ChHHHHHHHHHHHhcCCCeEEEE-EcChHHHHHHHHHHHH
Confidence 999999 9999999999999999999988887543 236788888 6688889999999 9999999999999999
Q ss_pred cCCCCCCeEEEEeCCcccc-------------ceeecccccCCchhhhHHH---------------HHHHHhhhhcCCC-
Q 003821 163 MGLVGPDSVWVIASDTITS-------------ALGIKTHFSQDSSSYKIFE---------------DQFRSYFRSEYPE- 213 (793)
Q Consensus 163 ~g~~~~~~~wi~~~~~~~~-------------~~g~~~~~~~~~~~~~~f~---------------~~~~~~~~~~~~~- 213 (793)
+|+. ++||.++.|... ++++..+..+. |.+++|. +.|...|.|..+.
T Consensus 266 ~g~~---~~wI~s~~w~~~~~~~~~~~~~~~G~l~~~~~~~~i-pgf~~fl~~~~p~~~p~d~~~~~~w~~~f~C~~~~~ 341 (479)
T 3sm9_A 266 ANAS---FTWVASDGWGAQESIIKGSEHVAYGAITLELASQPV-RQFDRYFQSLNPYNNHRNPWFRDFWEQKFQCSLQNK 341 (479)
T ss_dssp TTCC---CEEEECTTTTTCHHHHTTCTTTTTTCEEEEECCCCC-HHHHHHHHTCCTTTCTTCTTHHHHHHHHHTCBCCC-
T ss_pred hCCE---EEEEEechhhcCccccccccccCceEEEEEeccCCC-cchhhHhhccCcCcCCCCHHHHHHHHHHcCCCCCCC
Confidence 9996 699999545331 45555443333 5555553 4566677664221
Q ss_pred ------CCCC--------CcchhhHhHhHHHHHHHHHHhhccC----C---------CCChhhHH-Hhhhhcccccc---
Q 003821 214 ------DDVS--------EPGIYALRAYDSITVVAKSIDGMTS----D---------NSSSKISL-GYILSSNFTGL--- 262 (793)
Q Consensus 214 ------~~~~--------~~~~~a~~~YDAv~~la~Al~~~~~----~---------~~~g~~l~-~~l~~~~f~G~--- 262 (793)
+.+. ........+||||+++|+|||++.. . ..++++|. ++|++++|.+.
T Consensus 342 ~~~~~~C~~~~~l~~~~~~~~~~~~~vy~AVyavA~ALh~m~~~~~~~~~~~c~~~~~~~~~qL~~~~Lk~v~F~~~~~~ 421 (479)
T 3sm9_A 342 RNHRRVCDKHLAIDSSNYEQESKIMFVVNAVYAMAHALHKMQRTLCPNTTKLCDAMKILDGKKLYKDYLLKINFTAPFNP 421 (479)
T ss_dssp --CSCBCCTTCCCCTTTCCCCTTHHHHHHHHHHHHHHHHHHHHHHSTTCSSCCHHHHSCCHHHHHHHTGGGCCEECTTC-
T ss_pred cccccCCCCccccccCccccccchhhHHHHHHHHHHHHHHHHHhhcCCCCcCCCCCCCcChHHHHHHHhcceeeccccCc
Confidence 1110 1112346899999999999998842 0 13577899 99999999987
Q ss_pred ---ee-eEEEeCCCcCCCCcEEEEEeec----ceeEEEEEec
Q 003821 263 ---SG-PISFRGGKLLNSPILRIINMVG----KKYKEIDFWL 296 (793)
Q Consensus 263 ---tG-~i~Fd~~g~~~~~~~~I~~~~~----~~~~~VG~w~ 296 (793)
+| .+.||++|+. ...|+|++++. ..+++||.|+
T Consensus 422 ~~~~g~~v~fd~~G~~-~~~YdI~n~~~~~~~~~~~~VG~~~ 462 (479)
T 3sm9_A 422 NKDADSIVKFDTFGDG-MGRYNVFNFQNVGGKYSYLKVGHWA 462 (479)
T ss_dssp ----CCEECCCTTCBC-CCCEEEEEEEESSSCEEEEEEEEES
T ss_pred cccCCCeEEECCCCCc-ccceEEEEEEECCCcEEEEEEEEEe
Confidence 55 7999999996 67999999873 2478999997
No 14
>3qel_B Glutamate [NMDA] receptor subunit epsilon-2; ION channel, allosteric modulation, phenylethanolamine, N-glycosylation, extracellular; HET: NAG BMA MAN FUC QEL; 2.60A {Rattus norvegicus} PDB: 3qem_B* 3jpw_A* 3jpy_A*
Probab=100.00 E-value=1.2e-34 Score=311.77 Aligned_cols=262 Identities=17% Similarity=0.250 Sum_probs=198.3
Q ss_pred cccceEEEEc-CCChhhHHH--HHHhccCCCccEEeeeCCCCCC-CCCC-CCCCeEEEecCChHHHHHHHHHHHhhcCce
Q 003821 3 KEKEVKVIVG-METWGAATM--VADIGSRAQVPVLSFAEPAIAP-PLTS-TRWPFLVRMANSSAEQITCTAALVGSYNWR 77 (793)
Q Consensus 3 ~~~~V~aiiG-p~~s~~~~~--va~i~~~~~iP~Is~~~~~~~~-~l~~-~~~~~~~r~~p~~~~~~~ai~~ll~~~~w~ 77 (793)
.+++|.|||| |.++..+.+ ++.+++.++||+|+++++ +| .+++ .++|||||+.|+|..|++|+++++++|||+
T Consensus 60 ~~~~V~aiIgg~~s~~~a~a~~v~~i~~~~~iP~IS~~at--~~~~lsd~~~~p~f~Rt~psd~~q~~ai~~ll~~fgW~ 137 (364)
T 3qel_B 60 SDRKIQGVVFADDTDQEAIAQILDFISAQTLTPILGIHGG--SSMIMADKDESSMFFQFGPSIEQQASVMLNIMEEYDWY 137 (364)
T ss_dssp HHSCEEEEEEEESSCCTHHHHHHHHHHHHHTCCEEEEEGG--GGSCCSSCCTTCCEEESSCCHHHHHHHHHHHHHHTTCC
T ss_pred HhCCeEEEEecCCCCchHHHHHHHHHHhccCCCEEEeecC--CCCcCCCcccCceEEEcCCChHHHHHHHHHHHHHCCCe
Confidence 3467989885 555444555 999999999999999999 77 7875 569999999999999999999999999999
Q ss_pred EEEEEEEcCCCccccccHHHHHHHHHhc--C--ceeeEEeecCCCCCCCCChHHHHHHH-HHhhcCCceEEEEeccChHH
Q 003821 78 KVIIIYEDDATNADTGNLALLSEALQIS--N--SEIEYRLVLPPISYLTDPKQFLQEKL-LKLLRTESRVFIILQSSLAM 152 (793)
Q Consensus 78 ~vaii~~dd~~G~~~~~~~~l~~~l~~~--g--~~v~~~~~~~~~~~~~~~~~~~~~~l-~~l~~~~~~vivvl~~~~~~ 152 (793)
+|++||+|+ .| +..|.+.+++. | +|+.....++.... ..++...+ +++++.+++|||+ +|+.+.
T Consensus 138 ~V~iI~~d~-~g-----~~~~~~~l~~~~~~~~ici~~~~~i~~~~~----~~~~~~~l~~~i~~~~a~ViIv-~~~~~~ 206 (364)
T 3qel_B 138 IFSIVTTYF-PG-----YQDFVNKIRSTIENSFVGWELEEVLLLDMS----LDDGDSKIQNQLKKLQSPIILL-YCTKEE 206 (364)
T ss_dssp EEEEEEESC-TT-----HHHHHHHHHHHHHTCSSCCEEEEEEEECTT----SCSSSCHHHHHHTTCCCSEEEE-ESCHHH
T ss_pred EEEEEEeCC-cc-----HHHHHHHHHHHhhccccceEEEEEEccCCC----cccHHHHHHHHHHccCCcEEEE-EcCHHH
Confidence 999999985 45 45566555554 4 47666544432210 12355667 6888899999999 999999
Q ss_pred HHHHHHHHHHcCCCCCCeEEEEeCCccccceeeccc-ccCCchhhhHHHHHHHHhhhhcCCCCCCCCcchhhHhHhHHHH
Q 003821 153 GIHLFREAKEMGLVGPDSVWVIASDTITSALGIKTH-FSQDSSSYKIFEDQFRSYFRSEYPEDDVSEPGIYALRAYDSIT 231 (793)
Q Consensus 153 ~~~~l~~a~~~g~~~~~~~wi~~~~~~~~~~g~~~~-~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~ 231 (793)
+..++++|.++||++++|+||++ ++........+. ++..-..++- ..|+ ....+++||||+
T Consensus 207 ~~~ll~~a~~~g~~~~~y~wI~t-~~~~~~~~~~~~~~~~g~~~~~~--~~W~---------------~~~~~~~yDaV~ 268 (364)
T 3qel_B 207 ATYIFEVANSVGLTGYGYTWIVP-SLVAGDTDTVPSEFPTGLISVSY--DEWD---------------YGLPARVRDGIA 268 (364)
T ss_dssp HHHHHHHHHTTTCSSTTCEEEEC-HHHHCSTTCCCTTSCTTCEECCB--CTTT---------------SCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCeEEEEe-cccccCcccccccCCCceEEEee--ccch---------------hhHHHHHHHHHH
Confidence 99999999999999999999999 554221111000 0000000000 0010 125689999999
Q ss_pred HHHHHHhhccCC------------------CCChhhHHHhhhhcccccceeeEEEeCCCcCCCCcEEEEEee-cceeEEE
Q 003821 232 VVAKSIDGMTSD------------------NSSSKISLGYILSSNFTGLSGPISFRGGKLLNSPILRIINMV-GKKYKEI 292 (793)
Q Consensus 232 ~la~Al~~~~~~------------------~~~g~~l~~~l~~~~f~G~tG~i~Fd~~g~~~~~~~~I~~~~-~~~~~~V 292 (793)
++|+|++++..+ |.+|..|.++|++++|+|+ ++.||++|++.++.|+|+|++ ++++++|
T Consensus 269 ~~A~A~~~~~~~~~~i~~~~~~C~~~~~~~~~~G~~l~~~l~~v~f~Gl--~i~F~~~G~~~~~~~~Iinl~~~~~~~~V 346 (364)
T 3qel_B 269 IITTAASDMLSEHSFIPEPKSSCYNTHEKRIYQSNMLNRYLINVTFEGR--DLSFSEDGYQMHPKLVIILLNKERKWERV 346 (364)
T ss_dssp HHHHHHHHHHTTTSCCCCCCSCSTTTTTGGGGCCSTTHHHHTCCEETTE--ECCBCTTSSBSSCCEEEEEECTTSCEEEE
T ss_pred HHHHHHHHHHhccCCCCCCCCCCCCCCCCccCCHHHHHHHHhhceEeCc--eEEECCCCCcccceEEEEEEcCCCCcEEE
Confidence 999999876331 2467889999999999998 899999999999999999998 6789999
Q ss_pred EEecC
Q 003821 293 DFWLP 297 (793)
Q Consensus 293 G~w~~ 297 (793)
|+|++
T Consensus 347 G~W~~ 351 (364)
T 3qel_B 347 GKWKD 351 (364)
T ss_dssp EEECS
T ss_pred EEECC
Confidence 99984
No 15
>3ks9_A Mglur1, metabotropic glutamate receptor 1; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99 NAG; 1.90A {Homo sapiens} SCOP: c.93.1.1 PDB: 1ewk_A* 1ewt_A* 1ewv_A 1isr_A* 1iss_A* 3lmk_A*
Probab=100.00 E-value=8.1e-33 Score=310.31 Aligned_cols=282 Identities=16% Similarity=0.225 Sum_probs=226.5
Q ss_pred cccceEEEEcCCChhhHHHHHHhccCCCccEEeeeCCCCCCCCCC-CCCCeEEEecCChHHHHHHHHHHHhhcCceEEEE
Q 003821 3 KEKEVKVIVGMETWGAATMVADIGSRAQVPVLSFAEPAIAPPLTS-TRWPFLVRMANSSAEQITCTAALVGSYNWRKVII 81 (793)
Q Consensus 3 ~~~~V~aiiGp~~s~~~~~va~i~~~~~iP~Is~~~~~~~~~l~~-~~~~~~~r~~p~~~~~~~ai~~ll~~~~w~~vai 81 (793)
.+++|+|||||.+|+.+.+++++++.+++|+|+++++ ++.+++ ..+||+||+.|++..|+.++++++++|||+||++
T Consensus 125 ~~~~v~aviG~~~S~~s~ava~i~~~~~iP~Is~~a~--~~~lsd~~~~p~~frt~psd~~~~~ai~~ll~~fgw~~V~l 202 (496)
T 3ks9_A 125 TKKPIAGVIGPGSSSVAIQVQNLLQLFDIPQIAYSAT--SIDLSDKTLYKYFLRVVPSDTLQARAMLDIVKRYNWTYVSA 202 (496)
T ss_dssp --CCEEEEECCSSHHHHHHHHHHHGGGTCCEEESSCC--CGGGGCTTTCTTEEESSCCTHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCceEEEECCCccHHHHHHHHHHhhcceeEECCCcC--CccccCccCCCceEEecCChHHHHHHHHHHHHHcCCcEEEE
Confidence 3678999999999999999999999999999999999 899986 4699999999999999999999999999999999
Q ss_pred EEEcCCCccccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcC--CceEEEEeccChHHHHHHHHH
Q 003821 82 IYEDDATNADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRT--ESRVFIILQSSLAMGIHLFRE 159 (793)
Q Consensus 82 i~~dd~~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~vivvl~~~~~~~~~~l~~ 159 (793)
|++||+|| ..+++.+++++++.|+||+....++... ...++..++.+|+++ .++||++ ++..+++..++++
T Consensus 203 i~~dd~~G--~~~~~~~~~~~~~~Gi~v~~~~~i~~~~----~~~d~~~~l~~i~~~~~~a~vii~-~~~~~~~~~l~~~ 275 (496)
T 3ks9_A 203 VHTEGNYG--ESGMDAFKELAAQEGLSIAHSDKIYSNA----GEKSFDRLLRKLRERLPKARVVVC-FCEGMTVRGLLSA 275 (496)
T ss_dssp EEESSHHH--HHHHHHHHHHHHHTTCEEEEEEEECTTC----CHHHHHHHHHHHHTTTTTTCEEEE-ECCHHHHHHHHHH
T ss_pred EEeccHHH--HHHHHHHHHHHHHcCceEEEEEEECCCC----CHHHHHHHHHHHHhccCceEEEEE-ecChHHHHHHHHH
Confidence 99999999 9999999999999999999888776432 347899999999985 7888888 8999999999999
Q ss_pred HHHcCCCCCCeEEEEeCCcccc-------------ceeecccccCCchhhhHHHH---------------HHHHhhhhcC
Q 003821 160 AKEMGLVGPDSVWVIASDTITS-------------ALGIKTHFSQDSSSYKIFED---------------QFRSYFRSEY 211 (793)
Q Consensus 160 a~~~g~~~~~~~wi~~~~~~~~-------------~~g~~~~~~~~~~~~~~f~~---------------~~~~~~~~~~ 211 (793)
+++.|+.++ +.||.++.|... ++++..+.++. |.+++|.. -|...|.|..
T Consensus 276 ~~~~g~~~k-~~~i~s~~w~~~~~~~~~~~~~~~G~l~~~~~~~~i-pgf~~fl~~~~p~~~p~d~~l~~~W~~~f~C~~ 353 (496)
T 3ks9_A 276 MRRLGVVGE-FSLIGSDGWADRDEVIEGYEVEANGGITIKLQSPEV-RSFDDYFLKLRLDTNTRNPWFPEFWQHRFQCRL 353 (496)
T ss_dssp HHHHTCCSC-CEEEECTTTTTCHHHHTTCHHHHTTCEEEEECCCCC-HHHHHHHTTCCTTTCCSCTTHHHHHHHHTTCBC
T ss_pred HHHhCCCCc-EEEEEechhccccccccccccccCceEEEeccCCcC-cchHhHhccCCcCCCCCCHHHHHHHHHHcCCCC
Confidence 999999754 578888444321 44555444433 56666543 4666676643
Q ss_pred CC-----------CCCCC-------cchhhHhHhHHHHHHHHHHhhccC-------------CCCChhhHHHhhhhcccc
Q 003821 212 PE-----------DDVSE-------PGIYALRAYDSITVVAKSIDGMTS-------------DNSSSKISLGYILSSNFT 260 (793)
Q Consensus 212 ~~-----------~~~~~-------~~~~a~~~YDAv~~la~Al~~~~~-------------~~~~g~~l~~~l~~~~f~ 260 (793)
+. +.+.+ .......+|+||+++|+|||++.. ....+++|..+|++++|.
T Consensus 354 ~~~~~~~~~~~~~C~~~~~l~~~~~~~~~~~~vy~AVyavAhALh~m~~~~~~~~~~~c~~~~~~~~~qL~~~Lk~v~f~ 433 (496)
T 3ks9_A 354 PGHLLENPNFKRICTGNESLEENYVQDSKMGFVINAIYAMAHGLQNMHHALCPGHVGLCDAMKPIDGSKLLDFLIKSSFI 433 (496)
T ss_dssp CC-----CCCSSBCCSCCCTTTTCCCCTTHHHHHHHHHHHHHHHHHHHHHHSTTCSSCCGGGSSCCHHHHHHHHHTCEEE
T ss_pred CCCccccccccCCCCCcccccccccccchHHHHHHHHHHHHHHHHHHHhccCCCCCCCCcCCCCCCHHHHHHHHHhcCCc
Confidence 21 11100 011234699999999999998742 013567899999999999
Q ss_pred ccee-eEEEeCCCcCCCCcEEEEEeec-----ceeEEEEEec
Q 003821 261 GLSG-PISFRGGKLLNSPILRIINMVG-----KKYKEIDFWL 296 (793)
Q Consensus 261 G~tG-~i~Fd~~g~~~~~~~~I~~~~~-----~~~~~VG~w~ 296 (793)
+.+| .+.||++|+. ...|+|+|++. ..+++||.|+
T Consensus 434 ~~~g~~v~fd~~gd~-~~~YdI~n~~~~~~~~~~~~~VG~~~ 474 (496)
T 3ks9_A 434 GVSGEEVWFDEKGDA-PGRYDIMNLQYTEANRYDYVHVGTWH 474 (496)
T ss_dssp CTTSCEEECCTTSCC-CCEEEEEEEEECC--CEEEEEEEEEE
T ss_pred CCCCCEEEECCCCCc-cceEEEEEEEECCCCCEEEEEEEEEe
Confidence 9999 6999999995 57999999873 2478999997
No 16
>3mq4_A Mglur7, metabotropic glutamate receptor 7; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99; 2.80A {Homo sapiens} SCOP: c.93.1.0 PDB: 2e4z_A*
Probab=99.98 E-value=2.2e-32 Score=306.32 Aligned_cols=282 Identities=20% Similarity=0.284 Sum_probs=203.3
Q ss_pred cceEEEEcCCChhhHHHHHHhccCCCccEEeeeCCCCCCCCCC-CCCCeEEEecCChHHHHHHHHHHHhhcCceEEEEEE
Q 003821 5 KEVKVIVGMETWGAATMVADIGSRAQVPVLSFAEPAIAPPLTS-TRWPFLVRMANSSAEQITCTAALVGSYNWRKVIIIY 83 (793)
Q Consensus 5 ~~V~aiiGp~~s~~~~~va~i~~~~~iP~Is~~~~~~~~~l~~-~~~~~~~r~~p~~~~~~~ai~~ll~~~~w~~vaii~ 83 (793)
++|+|||||.+|+.+.+++++++.+++|+|+++++ +|.+++ .++||+||+.|++..|+.++++++++|||+||++|+
T Consensus 116 ~~v~aiiG~~~S~~s~ava~~~~~~~iP~Is~~a~--~~~lsd~~~~p~~fr~~psd~~~~~a~~~ll~~fgw~~V~li~ 193 (481)
T 3mq4_A 116 EKVVGVIGASGSSVSIMVANILRLFQIPQISYAST--APELSDDRRYDFFSRVVPPDSFQAQAMVDIVKALGWNYVSTLA 193 (481)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHTTTTCCEEESSCC--CGGGGCTTTTTTEEESSCCTHHHHHHHHHHHHHHTCCEEEEC-
T ss_pred CCcEEEEcCCCcHHHHHHHHHHHhCCCCEEccccC--CccccCcccCCceEEecCchHHHHHHHHHHHHHCCCeEEEEEE
Confidence 78999999999999999999999999999999999 899986 578999999999999999999999999999999999
Q ss_pred EcCCCccccccHHHHHHHHHh-cCceeeEEeecCCCCCCCCChHHHHHHHHHhh-cCCceEEEEeccChHHHHHHHHHHH
Q 003821 84 EDDATNADTGNLALLSEALQI-SNSEIEYRLVLPPISYLTDPKQFLQEKLLKLL-RTESRVFIILQSSLAMGIHLFREAK 161 (793)
Q Consensus 84 ~dd~~G~~~~~~~~l~~~l~~-~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~-~~~~~vivvl~~~~~~~~~~l~~a~ 161 (793)
+||+|| ....+.+++.+++ .|+||+....++.... ....++...+.+++ +++++|||+ ++..+++..++++++
T Consensus 194 ~d~~~G--~~~~~~~~~~~~~~~Gi~va~~~~i~~~~~--~~~~d~~~~l~~i~~~s~a~vIi~-~~~~~~~~~l~~~~~ 268 (481)
T 3mq4_A 194 SEGSYG--EKGVESFTQISKEAGGLSIAQSVRIPQERK--DRTIDFDRIIKQLLDTPNSRAVVI-FANDEDIKQILAAAK 268 (481)
T ss_dssp --CHHH--HHHHHHHHHCC---CCCEECCCCCCCCC--------CCSHHHHCCCCC----CEEE-CCCSSHHHHHC----
T ss_pred EcchhH--HHHHHHHHHHHHHhCCEEEEEEEEcCCCCc--cchHHHHHHHHHHHhcCCCEEEEE-EEChHHHHHHHHHHH
Confidence 999999 9999999988875 7999988777764321 01115677888988 579999999 999999999999999
Q ss_pred HcCCCCCCeEEEEeCCcccc-------------ceeecccccCCchhhhHHHH---------------HHHHhhhhcCCC
Q 003821 162 EMGLVGPDSVWVIASDTITS-------------ALGIKTHFSQDSSSYKIFED---------------QFRSYFRSEYPE 213 (793)
Q Consensus 162 ~~g~~~~~~~wi~~~~~~~~-------------~~g~~~~~~~~~~~~~~f~~---------------~~~~~~~~~~~~ 213 (793)
+.|+.+ .++||.++.|... ++++..+..+. |.+++|.. -|+..|.|..+.
T Consensus 269 ~~g~~~-~~~wI~s~~w~~~~~~~~~~~~~~~G~l~~~~~~~~i-pgf~~fl~~~~p~~~p~d~~~~~~w~~~f~C~~~~ 346 (481)
T 3mq4_A 269 RADQVG-HFLWVGSDSWGSKINPLHQHEDIAEGAITIQPKRATV-EGFDAYFTSRTLENNRRNVWFAEYWEENFNCKLTI 346 (481)
T ss_dssp -------CCCEEEC-----------------CCCEEEEECCCCC-HHHHHHHHTCCTTTCTTCTTHHHHHHHHHTCCC--
T ss_pred HccCCc-ceEEEEECccccccccccccchhhccEEEEecCcCcc-ccHHHHhhcCCcCcCCCCHHHHHHHHHhcCCCCCC
Confidence 999975 3689998444321 34444443333 56666543 455566653221
Q ss_pred -----------CCCC---------CcchhhHhHhHHHHHHHHHHhhccCC-------------CCChhhHHHhhhhcccc
Q 003821 214 -----------DDVS---------EPGIYALRAYDSITVVAKSIDGMTSD-------------NSSSKISLGYILSSNFT 260 (793)
Q Consensus 214 -----------~~~~---------~~~~~a~~~YDAv~~la~Al~~~~~~-------------~~~g~~l~~~l~~~~f~ 260 (793)
+.+. ........+||||+++|+|||++... ..++++|.++|++++|.
T Consensus 347 ~~~~~~~~~~~Ct~~e~l~~~~~~~~~~~~~~vy~AVyavA~ALh~m~~~~~~~~~~~c~~~~~~~~~qL~~~Lk~v~F~ 426 (481)
T 3mq4_A 347 SGSKKEDTDRKCTGQERIGKDSNYEQEGKVQFVIDAVYAMAHALHHMNKDLCADYRGVCPEMEQAGGKKLLKYIRNVNFN 426 (481)
T ss_dssp ----------CCCSCCCTTTSSCCCCCTTHHHHHHHHHHHHHHHHHHHHHHCC----CCHHHHTSCHHHHHHHHHTCEEE
T ss_pred ccccccccCCCCCCccccCcCCcccccchhhhHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCcCHHHHHHHHhcceee
Confidence 1110 01134567999999999999987420 13567899999999999
Q ss_pred ccee-eEEEeCCCcCCCCcEEEEEeec---c--eeEEEEEec
Q 003821 261 GLSG-PISFRGGKLLNSPILRIINMVG---K--KYKEIDFWL 296 (793)
Q Consensus 261 G~tG-~i~Fd~~g~~~~~~~~I~~~~~---~--~~~~VG~w~ 296 (793)
+.+| .+.||++|+. ...|+|+|++. + .+++||.|+
T Consensus 427 ~~~G~~v~fd~~Gd~-~~~YdI~n~~~~~~~~~~~~~VG~~~ 467 (481)
T 3mq4_A 427 GSAGTPVMFNKNGDA-PGRYDIFQYQTTNTSNPGYRLIGQWT 467 (481)
T ss_dssp CTTSSEEECCTTSCC-CCEEEEEEEC-----CCCEEEEEEEE
T ss_pred cCCCCEEEECCCCCC-ceeEEEEEEEECCCCcEEEEEEEEEc
Confidence 9999 7999999996 57999999872 2 478999998
No 17
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=99.97 E-value=2.4e-29 Score=272.45 Aligned_cols=270 Identities=16% Similarity=0.181 Sum_probs=229.3
Q ss_pred CcccceEEEEcCCChhhHHHHHHhccCCCccEEeeeCCCCCCCCCCCCCCeEEEecCChHHHHHHHHHHH-hhcCceEEE
Q 003821 2 IKEKEVKVIVGMETWGAATMVADIGSRAQVPVLSFAEPAIAPPLTSTRWPFLVRMANSSAEQITCTAALV-GSYNWRKVI 80 (793)
Q Consensus 2 i~~~~V~aiiGp~~s~~~~~va~i~~~~~iP~Is~~~~~~~~~l~~~~~~~~~r~~p~~~~~~~ai~~ll-~~~~w~~va 80 (793)
+.+++|.+||||.+|..+.+++++++..+||+|++.++ ++.++. .+||+||+.|++..++.++++++ +++||++|+
T Consensus 77 ~~~~~v~~iiG~~~s~~~~~~~~~~~~~~iP~i~~~~~--~~~~~~-~~~~~f~~~~~~~~~~~~~~~~l~~~~g~~~ia 153 (366)
T 3td9_A 77 IDKEKVLAIIGEVASAHSLAIAPIAEENKVPMVTPAST--NPLVTQ-GRKFVSRVCFIDPFQGAAMAVFAYKNLGAKRVV 153 (366)
T ss_dssp HHTSCCSEEEECSSHHHHHHHHHHHHHTTCCEEESSCC--CGGGTT-TCSSEEESSCCHHHHHHHHHHHHHHTSCCCEEE
T ss_pred hccCCeEEEEccCCchhHHHHHHHHHhCCCeEEecCCC--CccccC-CCCCEEEEeCCcHHHHHHHHHHHHHhcCCcEEE
Confidence 44567999999999999999999999999999999887 666654 57999999999999999999998 668999999
Q ss_pred EEEE-cCCCccccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcCCceEEEEeccChHHHHHHHHH
Q 003821 81 IIYE-DDATNADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRTESRVFIILQSSLAMGIHLFRE 159 (793)
Q Consensus 81 ii~~-dd~~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivvl~~~~~~~~~~l~~ 159 (793)
+||. +++|| ....+.+++.+++.|++++... ++... .++...+.++++.++++|++ .+...++..++++
T Consensus 154 ii~~~~~~~~--~~~~~~~~~~~~~~G~~v~~~~-~~~~~------~d~~~~~~~l~~~~~d~v~~-~~~~~~a~~~~~~ 223 (366)
T 3td9_A 154 VFTDVEQDYS--VGLSNFFINKFTELGGQVKRVF-FRSGD------QDFSAQLSVAMSFNPDAIYI-TGYYPEIALISRQ 223 (366)
T ss_dssp EEEETTCHHH--HHHHHHHHHHHHHTTCEEEEEE-ECTTC------CCCHHHHHHHHHTCCSEEEE-CSCHHHHHHHHHH
T ss_pred EEEeCCCcHH--HHHHHHHHHHHHHCCCEEEEEE-eCCCC------ccHHHHHHHHHhcCCCEEEE-ccchhHHHHHHHH
Confidence 9997 56688 8888999999999999998887 77654 45777899999999999998 8999999999999
Q ss_pred HHHcCCCCCCeEEEEeCCcccc-------------ceeecccccCC--chhhhHHHHHHHHhhhhcCCCCCCCCcchhhH
Q 003821 160 AKEMGLVGPDSVWVIASDTITS-------------ALGIKTHFSQD--SSSYKIFEDQFRSYFRSEYPEDDVSEPGIYAL 224 (793)
Q Consensus 160 a~~~g~~~~~~~wi~~~~~~~~-------------~~g~~~~~~~~--~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~a~ 224 (793)
+++.|+.. .|+.+ ++... ++....+.+.. .|..++|.++|+++|+. .|+.+++
T Consensus 224 ~~~~g~~~---~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~g~--------~p~~~~~ 291 (366)
T 3td9_A 224 ARQLGFTG---YILAG-DGADAPELIEIGGEAVEGLLFTTHYHPKAASNPVAKKFVEVYKEKYGK--------EPAALNA 291 (366)
T ss_dssp HHHTTCCS---EEEEC-GGGCSTHHHHHHGGGGTTCEEEESCCGGGCCSHHHHHHHHHHHHHHSS--------CCCHHHH
T ss_pred HHHcCCCc---eEEee-CCcCCHHHHHHHhHHhCCeEEEEeeCCCCCCCHHHHHHHHHHHHHHCC--------CCchhHH
Confidence 99999964 35655 44322 22222232322 57889999999998843 5788999
Q ss_pred hHhHHHHHHHHHHhhccCCCCChhhHHHhhhhcc-cccceeeEEEeCCCcCCCCcEEEEEeecceeEEEEEecCCC
Q 003821 225 RAYDSITVVAKSIDGMTSDNSSSKISLGYILSSN-FTGLSGPISFRGGKLLNSPILRIINMVGKKYKEIDFWLPKF 299 (793)
Q Consensus 225 ~~YDAv~~la~Al~~~~~~~~~g~~l~~~l~~~~-f~G~tG~i~Fd~~g~~~~~~~~I~~~~~~~~~~VG~w~~~~ 299 (793)
.+|||++++++|+++++. .++..+.++|++++ |+|++|+++||++|++. ..+.|+++++++++.|+.|++..
T Consensus 292 ~~yda~~~~~~al~~ag~--~~~~~~~~~l~~~~~~~g~~G~i~f~~~g~~~-~~~~i~~~~~g~~~~v~~~~~~~ 364 (366)
T 3td9_A 292 LGYDAYMVLLDAIERAGS--FDREKIAEEIRKTRNFNGASGIINIDENGDAI-KSVVVNIVKNGSVDFEAVINPDD 364 (366)
T ss_dssp HHHHHHHHHHHHHHHHTS--CCHHHHHHHHTTCCSEEETTEEECBCTTSCBC-CCEEEEEEETTEEEEEEEECGGG
T ss_pred HHHHHHHHHHHHHHHhCC--CCHHHHHHHHHhCCCCcccceeeEECCCCCcc-CceEEEEEECCEEEEEEecChhh
Confidence 999999999999999988 78999999999997 99999999999999975 46999999999999999998743
No 18
>3i45_A Twin-arginine translocation pathway signal protei; structural genomics; 1.36A {Rhodospirillum rubrum}
Probab=99.97 E-value=1.9e-29 Score=275.32 Aligned_cols=277 Identities=15% Similarity=0.111 Sum_probs=231.2
Q ss_pred CcccceEEEEcCCChhhHHHHHHhccCCCccEEeeeCCCCCCCCC-CCCCCeEEEecCChHHHHHHHHHHHhhcCceEEE
Q 003821 2 IKEKEVKVIVGMETWGAATMVADIGSRAQVPVLSFAEPAIAPPLT-STRWPFLVRMANSSAEQITCTAALVGSYNWRKVI 80 (793)
Q Consensus 2 i~~~~V~aiiGp~~s~~~~~va~i~~~~~iP~Is~~~~~~~~~l~-~~~~~~~~r~~p~~~~~~~ai~~ll~~~~w~~va 80 (793)
+.+++|.+||||.+|..+.+++++++..+||+|++.++ ++.++ ...+||+||+.|++..++.++++++.++||++|+
T Consensus 69 i~~~~v~aiiG~~~s~~~~a~~~~~~~~~ip~i~~~~~--~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~g~~~va 146 (387)
T 3i45_A 69 LTRHGVHALAGTFLSHVGLAVSDFARQRKVLFMASEPL--TDALTWEKGNRYTYRLRPSTYMQAAMLAAEAAKLPITRWA 146 (387)
T ss_dssp HHHHCCSEEEECCSHHHHHHHHHHHHHHTCCEEECSCC--CGGGTTTTCCTTEEECSCCHHHHHHHHHHHHTTSSCCEEE
T ss_pred HHhcCCEEEECCcchHHHHHHHHHHHHcCceEEecCCC--chhhhhccCCCCEEEeCCChHHHHHHHHHHHHHcCCCeEE
Confidence 44568999999999999999999999999999999887 67776 4578999999999999999999999999999999
Q ss_pred EEEEcCCCccccccHHHHHHHHHhc--CceeeEEeecCCCCCCCCChHHHHHHHHHhhcCCceEEEEeccChHHHHHHHH
Q 003821 81 IIYEDDATNADTGNLALLSEALQIS--NSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRTESRVFIILQSSLAMGIHLFR 158 (793)
Q Consensus 81 ii~~dd~~G~~~~~~~~l~~~l~~~--g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivvl~~~~~~~~~~l~ 158 (793)
+||+|++|| ....+.+++.+++. |++++....++... .++...+.++++.++++|++ .+...++..+++
T Consensus 147 ii~~~~~~g--~~~~~~~~~~l~~~~~g~~vv~~~~~~~~~------~d~~~~~~~i~~~~~d~v~~-~~~~~~~~~~~~ 217 (387)
T 3i45_A 147 TIAPNYEYG--QSAVARFKELLLAARPEVTFVAEQWPALYK------LDAGPTVQALQQAEPEGLFN-VLFGADLPKFVR 217 (387)
T ss_dssp EECCSSHHH--HHHHHHHHHHHHHHCTTCEEEEEECCCTTC------CCHHHHHHHHHHTCCSEEEE-CCCTTHHHHHHH
T ss_pred EEeCCchHh--HHHHHHHHHHHHHhCCCcEEEeeecCCCCC------cCHHHHHHHHHhCCCCEEEE-cCccHHHHHHHH
Confidence 999999999 99999999999998 89988877777655 56889999999999999998 889999999999
Q ss_pred HHHHcCCCCCCeEEEEeCCcc-cc------------ceee-cccccCCchhhhHHHHHHHHhhhhcCCCCCCCCcchhhH
Q 003821 159 EAKEMGLVGPDSVWVIASDTI-TS------------ALGI-KTHFSQDSSSYKIFEDQFRSYFRSEYPEDDVSEPGIYAL 224 (793)
Q Consensus 159 ~a~~~g~~~~~~~wi~~~~~~-~~------------~~g~-~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~a~ 224 (793)
++++.|+... +|+++..+. .. ++.. .++....+|..++|.++|+++|+ ..|+.+++
T Consensus 218 ~~~~~g~~~~--~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~--------~~p~~~~~ 287 (387)
T 3i45_A 218 EGRVRGLFAG--RQVVSMLTGEPEYLNPLKDEAPEGWIVTGYPWYDIDTAPHRAFVEAYRARWK--------EDPFVGSL 287 (387)
T ss_dssp HHHHHTSSTT--CEEEEEEEESHHHHGGGGGGCCSSCEEEECCGGGCCCHHHHHHHHHHHHHHS--------SCCCHHHH
T ss_pred HHHHcCCCCC--CeEEeecCCChHHHHHhhhhccCceEEecccccCCCCHHHHHHHHHHHHHHC--------CCCCcHHH
Confidence 9999999654 333331110 10 1111 11222345889999999999884 35678999
Q ss_pred hHhHHHHHHHHHHhhccCCCCChhhHHHhhhhcccccceeeEEEeCCCcCCCCcEEEEEee-cceeEEEEEecCCCCC
Q 003821 225 RAYDSITVVAKSIDGMTSDNSSSKISLGYILSSNFTGLSGPISFRGGKLLNSPILRIINMV-GKKYKEIDFWLPKFGL 301 (793)
Q Consensus 225 ~~YDAv~~la~Al~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~Fd~~g~~~~~~~~I~~~~-~~~~~~VG~w~~~~g~ 301 (793)
.+|||++++++|++++++ .++..+.++|++++|+|++|+++|++.+++......|.++. +++..+++.|.+..|.
T Consensus 288 ~~Yda~~~~a~Al~~ag~--~~~~~v~~al~~~~~~g~~G~i~f~~~~~~~~~~~~i~~~~~~~g~~~i~~w~~~~~~ 363 (387)
T 3i45_A 288 VGYNTLTAMAVAFEKAGG--TESETLVETLKDMAFSTPMGPLSFRASDHQSTMGAWVGRTALRDGKGVMVDWRYVDGG 363 (387)
T ss_dssp HHHHHHHHHHHHHHHHTS--CCHHHHHHHTTTCEEEETTEEEEBCTTTCBBCCCEEEEEEEEETTEEEEEEEEEECGG
T ss_pred HHHHHHHHHHHHHHHhCC--CCHHHHHHHHhcCCCcCCCCCeEEcCCCCccccceeEEEEEeeCCceeEEeeEEeCch
Confidence 999999999999999987 78999999999999999999999997555567788888875 5567899999876654
No 19
>4f06_A Extracellular ligand-binding receptor; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: MSE PHB; 1.30A {Rhodopseudomonas palustris} PDB: 4evs_A*
Probab=99.96 E-value=2.2e-29 Score=273.01 Aligned_cols=270 Identities=14% Similarity=0.175 Sum_probs=225.4
Q ss_pred CCcccceEEEEcCCChhhHHHHHHhccCCCccEEeeeCCCCCCCCCCCCCCeEEEecCChHHHHHHHHHHHhhcCceEEE
Q 003821 1 MIKEKEVKVIVGMETWGAATMVADIGSRAQVPVLSFAEPAIAPPLTSTRWPFLVRMANSSAEQITCTAALVGSYNWRKVI 80 (793)
Q Consensus 1 Li~~~~V~aiiGp~~s~~~~~va~i~~~~~iP~Is~~~~~~~~~l~~~~~~~~~r~~p~~~~~~~ai~~ll~~~~w~~va 80 (793)
|+.+++|.+||||.+|..+.++++++++.+||+|+++++ ++.++.. .||+||+.|++..++.+++++++..+|++|+
T Consensus 67 Li~~d~V~aiiG~~~S~~~~a~~~~~~~~~vp~i~~~a~--~~~~~~~-~~~~fr~~~~~~~~~~~~~~~~~~~g~k~va 143 (371)
T 4f06_A 67 LIVKEKVQYLAGLYFTPNAMAVAPLLQEAKVPMVVMNAA--TSSITEK-SPYIVRTSFTMFQNTVPAAKVAKQKGATKVA 143 (371)
T ss_dssp HHHTSCCSEEEECCSHHHHHHHGGGHHHHTCCEEESSCC--CGGGGGG-CTTEEESSCCHHHHHHHHHHHHHHTTCCEEE
T ss_pred HHhcCCCEEEEecccccchHHHHHHHHhhcCCccccccc--cchhccc-CCcceecccchhhhhhhhhhhhhhcCceEEE
Confidence 466789999999999999999999999999999999988 7777643 5899999999999999999999999999999
Q ss_pred EEEEcCCCccccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcCCceEEEEeccChHHHHHHHHHH
Q 003821 81 IIYEDDATNADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRTESRVFIILQSSLAMGIHLFREA 160 (793)
Q Consensus 81 ii~~dd~~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivvl~~~~~~~~~~l~~a 160 (793)
+||+|++|| ....+.+++.+++.|++++....++..+ .|+..++.+|+++++|+|+++....+++..+++++
T Consensus 144 ii~~~~~~g--~~~~~~~~~~~~~~g~~vv~~~~~~~~~------~d~~~~l~~i~~~~pd~v~~~~~~~~~~~~~~~~~ 215 (371)
T 4f06_A 144 IAVSDYGPG--IDAETAFKKTFEAEGGKVVEAVRMPLST------TDFGPIMQRIKNSGADMIFTFLPAGPPTLGFVKAY 215 (371)
T ss_dssp EEEESSHHH--HHHHHHHHHHHHHTTCEEEEEEEECTTC------CCCHHHHHHHHHHTCSEEEEECCTTHHHHHHHHHH
T ss_pred EEcCCcccc--hhHHHHHHHHHHhcCCceEEEEecCccc------ccHHHHHHHHHhcCCCEEEEEeccCchhhHHHHHH
Confidence 999999999 9999999999999999999999998876 67889999999999999887344557888899999
Q ss_pred HHcCCCCCCeEEEEeCCcccc------------ceeecccc-cCCchhhhHHHHHHHHhhhhcCCCCCCCCcchhhHhHh
Q 003821 161 KEMGLVGPDSVWVIASDTITS------------ALGIKTHF-SQDSSSYKIFEDQFRSYFRSEYPEDDVSEPGIYALRAY 227 (793)
Q Consensus 161 ~~~g~~~~~~~wi~~~~~~~~------------~~g~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~a~~~Y 227 (793)
++.|+......++.+++.... ++...++. +..+|..++|.++|+++++. ...|+.+++.+|
T Consensus 216 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~f~~~~~~~~~~------~~~~~~~a~~~Y 289 (371)
T 4f06_A 216 IDNGLKAGGVKLMSTGDVVTEPDLPNIGEAGLGILSTYHYAVSHDSPENKAFLALLQKGGAK------LDEVTMTSVAAY 289 (371)
T ss_dssp HHTTTTTTTCEEEEEGGGGCGGGHHHHCGGGTTCEEEESCCTTCCSHHHHHHHHHHHHTTCC------GGGCCHHHHHHH
T ss_pred HHhhhhccCcEEEEecccCCHHHHHhcccccCceEEeeccccCCCChhHHHHHHHHHHhcCC------CCCccchHHHHH
Confidence 999998776666666333222 22222222 22357888999999887642 124678899999
Q ss_pred HHHHHHHHHHhhc-cCCCCChhhHHHhhhhcccccceeeEEEeCCCcCCCCcEEEEEee--ccee
Q 003821 228 DSITVVAKSIDGM-TSDNSSSKISLGYILSSNFTGLSGPISFRGGKLLNSPILRIINMV--GKKY 289 (793)
Q Consensus 228 DAv~~la~Al~~~-~~~~~~g~~l~~~l~~~~f~G~tG~i~Fd~~g~~~~~~~~I~~~~--~~~~ 289 (793)
||++++++|+++. ++ .+++.++++|++++|+|++|+++||++++.....+.|.+++ ++++
T Consensus 290 da~~~l~~Ai~~~ag~--~d~~~v~~al~~~~~~~~~G~i~fd~~~~~~~~~~~i~~v~~~dGk~ 352 (371)
T 4f06_A 290 DGARLIYKMIEATSGK--SDPDKAIAAVKGMKWVSPRGEVSIDPETRHITQNVYLREVEKVDGKL 352 (371)
T ss_dssp HHHHHHHHHHHHTTTS--CCHHHHHHHHTTCEEEETTEEEEECTTTCBEEEEEEEEEEEEETTEE
T ss_pred HHHHHHHHHHHHhcCC--CCHHHHHHHHhCCCeeCCcEEEEEcCCCCcccCCEEEEEEEecCCEE
Confidence 9999999999864 44 68999999999999999999999998877666677788876 4543
No 20
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A
Probab=99.96 E-value=5.3e-29 Score=268.67 Aligned_cols=269 Identities=16% Similarity=0.117 Sum_probs=227.4
Q ss_pred cceEEEEcCCChhhHHHHHHhccCCCccEEeeeCCCCCCCCCCCCCCeEEEecCChHHHHHHHHHHH-hhcCceEEEEEE
Q 003821 5 KEVKVIVGMETWGAATMVADIGSRAQVPVLSFAEPAIAPPLTSTRWPFLVRMANSSAEQITCTAALV-GSYNWRKVIIIY 83 (793)
Q Consensus 5 ~~V~aiiGp~~s~~~~~va~i~~~~~iP~Is~~~~~~~~~l~~~~~~~~~r~~p~~~~~~~ai~~ll-~~~~w~~vaii~ 83 (793)
++|.+||||.+|..+.++++++...+||+|++.++ ++.+++..++++||+.|++..++.++++++ +++||++|++|+
T Consensus 68 ~~v~~iig~~~s~~~~~~~~~~~~~~ip~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~iaii~ 145 (356)
T 3ipc_A 68 DGVKFVVGHANSGVSIPASEVYAENGILEITPAAT--NPVFTERGLWNTFRTCGRDDQQGGIAGKYLADHFKDAKVAIIH 145 (356)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHTTTCEEEESSCC--CGGGGSSCCTTEEESSCCHHHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred CCCcEEEcCCCcHHHHHHHHHHHhCCCeEEecCCC--CcHhhcCCCCcEEEecCChHHHHHHHHHHHHHhcCCCEEEEEe
Confidence 78999999999999999999999999999999988 777877778999999999999999999965 567999999999
Q ss_pred EcCCCccccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcCCceEEEEeccChHHHHHHHHHHHHc
Q 003821 84 EDDATNADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRTESRVFIILQSSLAMGIHLFREAKEM 163 (793)
Q Consensus 84 ~dd~~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivvl~~~~~~~~~~l~~a~~~ 163 (793)
.+++|| ....+.+++.+++.|++++....++... .++...+.++++.++++|++ .+...++..+++++++.
T Consensus 146 ~~~~~~--~~~~~~~~~~l~~~g~~v~~~~~~~~~~------~d~~~~~~~l~~~~~d~v~~-~~~~~~a~~~~~~~~~~ 216 (356)
T 3ipc_A 146 DKTPYG--QGLADETKKAANAAGVTEVMYEGVNVGD------KDFSALISKMKEAGVSIIYW-GGLHTEAGLIIRQAADQ 216 (356)
T ss_dssp CSSHHH--HHHHHHHHHHHHHTTCCCSEEEECCTTC------CCCHHHHHHHHHTTCCEEEE-ESCHHHHHHHHHHHHHH
T ss_pred CCChHH--HHHHHHHHHHHHHcCCEEEEEEeeCCCC------CCHHHHHHHHHhcCCCEEEE-ccCchHHHHHHHHHHHC
Confidence 998899 9999999999999999998777777654 45777888999999999998 78999999999999999
Q ss_pred CCCCCCeEEEEeCCcccc-------------ceeecccccCCchhhhHHHHHHHHhhhhcCCCCCCCCcchhhHhHhHHH
Q 003821 164 GLVGPDSVWVIASDTITS-------------ALGIKTHFSQDSSSYKIFEDQFRSYFRSEYPEDDVSEPGIYALRAYDSI 230 (793)
Q Consensus 164 g~~~~~~~wi~~~~~~~~-------------~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv 230 (793)
|+..+ |+.+ ++..+ ++...++.+...|..++|.++|+++ + ..|+.+++.+|||+
T Consensus 217 g~~~~---~~~~-~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~-~--------~~p~~~~~~~yda~ 283 (356)
T 3ipc_A 217 GLKAK---LVSG-DGIVSNELASIAGDAVEGTLNTFGPDPTLRPENKELVEKFKAA-G--------FNPEAYTLYSYAAM 283 (356)
T ss_dssp TCCCE---EEEC-GGGCSHHHHHHHGGGGTTCEEEESCCGGGCGGGHHHHHHHHHT-T--------CCCCTTHHHHHHHH
T ss_pred CCCCc---EEEe-ccccCHHHHHHhhHHhCCEEEEecCCCCCChhHHHHHHHHHHc-C--------CCcchhHHHHHHHH
Confidence 99754 6665 44332 2222233333457889999998876 3 24667899999999
Q ss_pred HHHHHHHhhccCCCCChhhHHHhhhhcccccceeeEEEeCCCcCCCCcEEEEEeec---ceeEEEEEecCCC
Q 003821 231 TVVAKSIDGMTSDNSSSKISLGYILSSNFTGLSGPISFRGGKLLNSPILRIINMVG---KKYKEIDFWLPKF 299 (793)
Q Consensus 231 ~~la~Al~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~Fd~~g~~~~~~~~I~~~~~---~~~~~VG~w~~~~ 299 (793)
+++++|+++++. .++..+.++|++.+|+|++|+++||++|++....+.|+++++ +.|+.+..|.+..
T Consensus 284 ~~~~~al~~ag~--~~~~~~~~~l~~~~~~g~~G~~~f~~~g~~~~~~~~i~~~~~~~~G~~~~~~~~~~~~ 353 (356)
T 3ipc_A 284 QAIAGAAKAAGS--VEPEKVAEALKKGSFPTALGEISFDEKGDPKLPGYVMYEWKKGPDGKFTYIQQGSHHH 353 (356)
T ss_dssp HHHHHHHHHHTC--CCHHHHHHHHTTCCBCCTTSSBCBCTTSCBCCCCCEEEEEEECTTSSEEEEEC-----
T ss_pred HHHHHHHHHhCC--CCHHHHHHHHHhCCCCCcceeeEECCCCCccCCCeEEEEEEECCCCcEEEEecccccc
Confidence 999999999988 789999999999999999999999999998888999999995 8899999987643
No 21
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A
Probab=99.96 E-value=6.5e-28 Score=262.13 Aligned_cols=274 Identities=13% Similarity=0.180 Sum_probs=232.3
Q ss_pred CCcccceEEEEcCCChhhHHHHHHhccCCCccEEeeeCCCCCCCCCCC-CCCeEEEecCChHHHHHHHHHHHhhcCceEE
Q 003821 1 MIKEKEVKVIVGMETWGAATMVADIGSRAQVPVLSFAEPAIAPPLTST-RWPFLVRMANSSAEQITCTAALVGSYNWRKV 79 (793)
Q Consensus 1 Li~~~~V~aiiGp~~s~~~~~va~i~~~~~iP~Is~~~~~~~~~l~~~-~~~~~~r~~p~~~~~~~ai~~ll~~~~w~~v 79 (793)
|+.+++|.+||||.+|..+.++++++...+||+|++.++ ++.++.. .+|++||+.|++..++.++++++.++||++|
T Consensus 77 l~~~~~v~~iig~~~s~~~~~~~~~~~~~~iP~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~i 154 (375)
T 4evq_A 77 LIQSEKADVLIGTVHSGVAMAMVKIAREDGIPTIVPNAG--ADIITRAMCAPNVFRTSFANGQIGRATGDAMIKAGLKKA 154 (375)
T ss_dssp CCCCSCCSEEEECSSHHHHHHHHHHHHHHCCCEEESSCC--CGGGGTTTCCTTEEESSCCHHHHHHHHHHHHHHTTCCEE
T ss_pred HHhcCCceEEEcCCccHHHHHHHHHHHHcCceEEecCCC--ChhhcccCCCCCEEEeeCChHhHHHHHHHHHHHcCCcEE
Confidence 455679999999999999999999999999999999988 7777653 4899999999999999999999999999999
Q ss_pred EEEEEcCCCccccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcCCceEEEEeccChHHHHHHHHH
Q 003821 80 IIIYEDDATNADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRTESRVFIILQSSLAMGIHLFRE 159 (793)
Q Consensus 80 aii~~dd~~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivvl~~~~~~~~~~l~~ 159 (793)
++|+.++++| ....+.+++.+++.|++++....++... .++...+.++++.++++|++ .+...++..++++
T Consensus 155 a~i~~~~~~~--~~~~~~~~~~l~~~G~~v~~~~~~~~~~------~d~~~~~~~l~~~~~dai~~-~~~~~~a~~~~~~ 225 (375)
T 4evq_A 155 VTVTWKYAAG--EEMVSGFKKSFTAGKGEVVKDITIAFPD------VEFQSALAEIASLKPDCVYA-FFSGGGALKFIKD 225 (375)
T ss_dssp EEEEESSHHH--HHHHHHHHHHHHHTTCEEEEEEEECTTC------CCCHHHHHHHHHHCCSEEEE-ECCTHHHHHHHHH
T ss_pred EEEecCchHH--HHHHHHHHHHHHHcCCeEEEEEecCCCC------ccHHHHHHHHHhcCCCEEEE-ecCcchHHHHHHH
Confidence 9999998898 8899999999999999998777777654 45677888888889999888 7888999999999
Q ss_pred HHHcCCCCCCeEEEEeCCcccc------------ceeecccccC-CchhhhHHHHHHHHhhhhcCCCCCCCCcchhhHhH
Q 003821 160 AKEMGLVGPDSVWVIASDTITS------------ALGIKTHFSQ-DSSSYKIFEDQFRSYFRSEYPEDDVSEPGIYALRA 226 (793)
Q Consensus 160 a~~~g~~~~~~~wi~~~~~~~~------------~~g~~~~~~~-~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~a~~~ 226 (793)
+++.|+..+ |+.+ ++... ++...++.+. .+|..++|.++|+++|+ ..|+.+++.+
T Consensus 226 ~~~~g~~vp---~~~~-~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~--------~~p~~~~~~~ 293 (375)
T 4evq_A 226 YAAANLGIP---LWGP-GFLTDGVEAAAGPAGDGIKTVLHYVSDLDNAENQAFVKSFEAAYK--------IPPDVFAVQG 293 (375)
T ss_dssp HHHTTCCCC---EEEE-GGGTTTTHHHHGGGGTTCEEEESCCTTCCSHHHHHHHHHHHHHHS--------SCCCHHHHHH
T ss_pred HHHcCCCce---EEec-CcCCHHHHHhhhhhcCCeEEeeccCCCCCCHHHHHHHHHHHHHHC--------CCCcHHHHHH
Confidence 999999744 4444 33211 2222333322 35788999999999884 3577899999
Q ss_pred hHHHHHHHHHHhhccCCCCChhhHHHhhhhcccccceeeEEEeCCCcCCCCcEEEEEeecceeEEEEEecCC
Q 003821 227 YDSITVVAKSIDGMTSDNSSSKISLGYILSSNFTGLSGPISFRGGKLLNSPILRIINMVGKKYKEIDFWLPK 298 (793)
Q Consensus 227 YDAv~~la~Al~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~Fd~~g~~~~~~~~I~~~~~~~~~~VG~w~~~ 298 (793)
|||++++++|+++++.++.++..+.++|++++|+|++|+++||++|++ ...+.|+++++++++.|+.+-+.
T Consensus 294 yda~~~~~~al~~~g~~~~~~~~l~~~l~~~~~~g~~G~i~f~~~g~~-~~~~~i~~~~~g~~~~v~~~~~~ 364 (375)
T 4evq_A 294 WDAGQLLDAGVKAVGGDVAKRKELNAAMAAASFASPRGPFKLSAAHNP-VQNFYLRELKGGKSVNLGLAAPA 364 (375)
T ss_dssp HHHHHHHHHHHHHTTTCTTCHHHHHHHHHTCEEEETTEEEEBCTTSCB-CCCEEEEEEETTEEEEEEEEECS
T ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHHhcCCcccCCcceeECCCCCc-cccEEEEEEECCCcEEeeehhhc
Confidence 999999999999998755689999999999999999999999999987 45899999999999999998653
No 22
>3i09_A Periplasmic branched-chain amino acid-binding Pro; type I periplasmic binding protein, structural genomics, JOI for structural genomics; HET: MSE CIT; 1.80A {Burkholderia mallei}
Probab=99.96 E-value=3.3e-28 Score=264.42 Aligned_cols=263 Identities=11% Similarity=0.124 Sum_probs=225.0
Q ss_pred CcccceEEEEcCCChhhHHHHHHhccCCCccEEeeeCCCCCCCCCC-CCCCeEEEecCChHHHHHHHHHHHhhcCceEEE
Q 003821 2 IKEKEVKVIVGMETWGAATMVADIGSRAQVPVLSFAEPAIAPPLTS-TRWPFLVRMANSSAEQITCTAALVGSYNWRKVI 80 (793)
Q Consensus 2 i~~~~V~aiiGp~~s~~~~~va~i~~~~~iP~Is~~~~~~~~~l~~-~~~~~~~r~~p~~~~~~~ai~~ll~~~~w~~va 80 (793)
+.+++|.+||||.+|..+.++++++...+||+|+++++ ++.++. ..+||+||+.|++..++.++++++.++||++|+
T Consensus 67 i~~~~v~~iiG~~~s~~~~a~~~~~~~~~ip~i~~~~~--~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~g~~~va 144 (375)
T 3i09_A 67 MDRGGLDLLVGGTNSATALSMNQVAAEKKKVYINIGAG--ADTLTNEQCTPYTVHYAYDTMALAKGTGSAVVKQGGKTWF 144 (375)
T ss_dssp HHHSCEEEEEECSCHHHHHHHHHHHHHHTCEEEECSCC--CGGGGTTTCCTTEEECSCCHHHHHHHHHHHHHHTTCCEEE
T ss_pred HhhCCCEEEECCCCcHHHHHHHHHHHHcCceEEEeCCC--chhhhcccCCCcEEEeeCChHHHHHHHHHHHHHcCCceEE
Confidence 44589999999999999999999999999999999888 777764 468999999999999999999999999999999
Q ss_pred EEEEcCCCccccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcCCceEEEEeccChHHHHHHHHHH
Q 003821 81 IIYEDDATNADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRTESRVFIILQSSLAMGIHLFREA 160 (793)
Q Consensus 81 ii~~dd~~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivvl~~~~~~~~~~l~~a 160 (793)
+|+++++|| ....+.+++.+++.|++++....++... .|+...+.++++.++++|++ .+..+++..+++++
T Consensus 145 ii~~~~~~g--~~~~~~~~~~~~~~G~~v~~~~~~~~~~------~d~~~~l~~i~~~~~d~v~~-~~~~~~~~~~~~~~ 215 (375)
T 3i09_A 145 FLTADYAFG--KALEKNTADVVKANGGKVLGEVRHPLSA------SDFSSFLLQAQSSKAQILGL-ANAGGDTVNAIKAA 215 (375)
T ss_dssp EEEESSHHH--HHHHHHHHHHHHHTTCEEEEEEEECTTC------SCCHHHHHHHHHTCCSEEEE-ECCHHHHHHHHHHH
T ss_pred EEecccHHH--HHHHHHHHHHHHHcCCEEeeeeeCCCCC------ccHHHHHHHHHhCCCCEEEE-ecCchhHHHHHHHH
Confidence 999999999 9999999999999999998887887655 45778899999999999988 88888999999999
Q ss_pred HHcCCCCCCeEEEEeCCcccc------------ceeecccccCCchhhhHHHHHHHHhhhhcCCCCCCCCcchhhHhHhH
Q 003821 161 KEMGLVGPDSVWVIASDTITS------------ALGIKTHFSQDSSSYKIFEDQFRSYFRSEYPEDDVSEPGIYALRAYD 228 (793)
Q Consensus 161 ~~~g~~~~~~~wi~~~~~~~~------------~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~a~~~YD 228 (793)
++.|+..+. ++++.++... +....++.+..+|..++|.++|+++|+ ..|+.+++.+||
T Consensus 216 ~~~g~~~~~--~i~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~g--------~~p~~~a~~~Yd 285 (375)
T 3i09_A 216 KEFGITKTM--KLAALLMFINDVHALGLETTQGLVLTDSWYWNRDQASRQWAQRYFAKMK--------KMPSSLQAADYS 285 (375)
T ss_dssp HHTTGGGTC--EEEESSCCHHHHHHHCHHHHTTCEEEESCCTTSSHHHHHHHHHHHHHHS--------SCCCHHHHHHHH
T ss_pred HHcCCCcCc--eEEecccchhhHhhhChhhhCCeeeeeeecCCCCHHHHHHHHHHHHHHC--------CCCcHHHHHHHH
Confidence 999998776 4444233221 222233333345788999999999884 367889999999
Q ss_pred HHHHHHHHHhhccCCCCChhhHHHhhhhcccccceeeEEEeCCCcCCCCcEEEEEeecce
Q 003821 229 SITVVAKSIDGMTSDNSSSKISLGYILSSNFTGLSGPISFRGGKLLNSPILRIINMVGKK 288 (793)
Q Consensus 229 Av~~la~Al~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~Fd~~g~~~~~~~~I~~~~~~~ 288 (793)
|++++++|++++++ .++..|.++|++++|+|++|.++|+++|++. ..+.|+++++++
T Consensus 286 a~~~~~~Al~~ag~--~~~~~l~~aL~~~~~~~~~G~~~f~~~g~~~-~~~~i~~v~~~~ 342 (375)
T 3i09_A 286 SVTTYLKAVQAAGS--TDSDKVMAQLKKMKIDDFYAKGYIRTDGSMI-HDMYLMEVKKPS 342 (375)
T ss_dssp HHHHHHHHHHHHTS--CCHHHHHHHHTTSCEESSSCEEEECTTSBEE-CCEEEEEECCGG
T ss_pred HHHHHHHHHHHhCC--CCHHHHHHHHhCCCccCCCCceEECCCCCee-eeeEEEEEeccc
Confidence 99999999999987 6899999999999999999999999999864 578899987654
No 23
>3n0w_A ABC branched chain amino acid family transporter, periplasmic ligand binding protein...; receptor family ligand binding region; HET: MSE; 1.88A {Burkholderia xenovorans}
Probab=99.96 E-value=2.3e-28 Score=265.99 Aligned_cols=264 Identities=13% Similarity=0.141 Sum_probs=224.2
Q ss_pred CcccceEEEEcCCChhhHHHHHHhccCCCccEEeeeCCCCCCCCCC-CCCCeEEEecCChHHHHHHHHHHHhhcCceEEE
Q 003821 2 IKEKEVKVIVGMETWGAATMVADIGSRAQVPVLSFAEPAIAPPLTS-TRWPFLVRMANSSAEQITCTAALVGSYNWRKVI 80 (793)
Q Consensus 2 i~~~~V~aiiGp~~s~~~~~va~i~~~~~iP~Is~~~~~~~~~l~~-~~~~~~~r~~p~~~~~~~ai~~ll~~~~w~~va 80 (793)
+.+++|.+||||.+|..+.++++++...+||+|++.++ ++.++. ..+||+||+.|++..+++++++++.++||++|+
T Consensus 69 i~~~~v~~iiG~~~s~~~~a~~~~~~~~~ip~i~~~~~--~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~g~~~va 146 (379)
T 3n0w_A 69 FDRDGVDAIFDVVNSGTALAINNLVKDKKKLAFITAAA--ADQIGGTECNGYGIGFLYNFTSIVKTVVQAQLAKGYKTWF 146 (379)
T ss_dssp HHHSCCCEEEECCCHHHHHHHHHHHHHHTCEEEECSCC--CTTTTTTTCCSSEEECSCCHHHHHHHHHHHHHHTTCCEEE
T ss_pred HHhCCceEEEcCCCcHHHHHHHHHHHHcCceEEEcCCC--chhhhcccCCCcEEEEeCChHHHHHHHHHHHHHcCCcEEE
Confidence 44579999999999999999999999999999999888 777765 468999999999999999999999999999999
Q ss_pred EEEEcCCCccccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcCCceEEEEeccChHHHHHHHHHH
Q 003821 81 IIYEDDATNADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRTESRVFIILQSSLAMGIHLFREA 160 (793)
Q Consensus 81 ii~~dd~~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivvl~~~~~~~~~~l~~a 160 (793)
+|++|++|| ....+.+++.+++.|++++....++... .|+...+.++++.++++|++ .+...++..+++++
T Consensus 147 ii~~~~~~g--~~~~~~~~~~~~~~G~~v~~~~~~~~~~------~d~~~~l~~i~~~~~d~v~~-~~~~~~~~~~~~~~ 217 (379)
T 3n0w_A 147 LMLPDAAYG--DLMNAAIRRELTAGGGQIVGSVRFPFET------QDFSSYLLQAKASGAQLIVS-TSGGAANINIMKQA 217 (379)
T ss_dssp EEEESSHHH--HHHHHHHHHHHHHHTCEEEEEEEECTTC------CCCHHHHHHHHHHTCSEEEE-CCCHHHHHHHHHHH
T ss_pred EEecccchh--HHHHHHHHHHHHHcCCEEEEEEeCCCCC------CCHHHHHHHHHHCCCCEEEE-ecccchHHHHHHHH
Confidence 999999999 9999999999999999999888887665 45778899999999999998 88889999999999
Q ss_pred HHcCCCCCCeEEEEeCCcccc------------ceeecccccCCchhhhHHHHHHHHhhhhcCCCCCCCCcchhhHhHhH
Q 003821 161 KEMGLVGPDSVWVIASDTITS------------ALGIKTHFSQDSSSYKIFEDQFRSYFRSEYPEDDVSEPGIYALRAYD 228 (793)
Q Consensus 161 ~~~g~~~~~~~wi~~~~~~~~------------~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~a~~~YD 228 (793)
+++|+..+.+ ++.+..+... +....++.+..+|..++|.++|+++|+ ..|+.+++.+||
T Consensus 218 ~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~g--------~~p~~~~~~~Yd 288 (379)
T 3n0w_A 218 REFGLPSKTQ-KVGGMIDILTDVKSAGLRVMQGQEYATSFYWNMDDRTRAFAKRFYAKMG--------KMPTNNQAGGYS 288 (379)
T ss_dssp HHTTCSCSSC-EEECCBCCHHHHHHHCHHHHTTCEEEESCCTTSSHHHHHHHHHHHHHHS--------SCCCHHHHHHHH
T ss_pred HHcCCCCCCc-EEEecccchHHHHhhCHHhhCCeEEEeeecCCCCHHHHHHHHHHHHHHC--------CCCChHHHHHHH
Confidence 9999987643 3443122211 222233333345788999999999884 357889999999
Q ss_pred HHHHHHHHHhhccCCCCChhhHHHhhhhcccccceee-EEEeCCCcCCCCcEEEEEeecce
Q 003821 229 SITVVAKSIDGMTSDNSSSKISLGYILSSNFTGLSGP-ISFRGGKLLNSPILRIINMVGKK 288 (793)
Q Consensus 229 Av~~la~Al~~~~~~~~~g~~l~~~l~~~~f~G~tG~-i~Fd~~g~~~~~~~~I~~~~~~~ 288 (793)
|++++++|++++++ .++..+.++|++++|+|..|. ++|+++|++ ...+.|+++++++
T Consensus 289 a~~~~~~Al~~ag~--~~~~~v~~aL~~~~~~~~~G~~~~f~~~g~~-~~~~~i~~~~~~~ 346 (379)
T 3n0w_A 289 AALQYLKAVNAIGS--KDPQKVFAYLKTIKFDDAVTRHGTLRPGGRL-VRDMYLVRAKKPE 346 (379)
T ss_dssp HHHHHHHHHHHHTC--CCHHHHHHHHTTCCBCSSSCCSBEECTTSBE-ECCEEEEEECCGG
T ss_pred HHHHHHHHHHHhCC--CCHHHHHHHHhcCCccccCCCceeECCCCCc-ccceEEEEEEchh
Confidence 99999999999987 789999999999999999885 999999986 4688899988654
No 24
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=99.96 E-value=4.4e-28 Score=261.64 Aligned_cols=271 Identities=12% Similarity=0.168 Sum_probs=226.3
Q ss_pred CcccceEEEEcCCChhhHHHHHHhccCCCccEEeeeCCCCCCCCCCCCCCeEEEecCChHHHHHHHHHHHhhcCceEEEE
Q 003821 2 IKEKEVKVIVGMETWGAATMVADIGSRAQVPVLSFAEPAIAPPLTSTRWPFLVRMANSSAEQITCTAALVGSYNWRKVII 81 (793)
Q Consensus 2 i~~~~V~aiiGp~~s~~~~~va~i~~~~~iP~Is~~~~~~~~~l~~~~~~~~~r~~p~~~~~~~ai~~ll~~~~w~~vai 81 (793)
+.+++|.+||||.+|..+.++++++...+||+|++.++ ++.++... +++||+.|++..++.++++++...||++|++
T Consensus 68 ~~~~~v~~iig~~~s~~~~~~~~~~~~~~iP~v~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~ 144 (358)
T 3hut_A 68 VDDPRVVGVLGDFSSTVSMAAGSIYGKEGMPQLSPTAA--HPDYIKIS-PWQFRAITTPAFEGPNNAAWMIGDGFTSVAV 144 (358)
T ss_dssp HHCTTEEEEEECSSHHHHHHHHHHHHHHTCCEEESSCC--CGGGTTSC-TTEEESSCCGGGHHHHHHHHHHHTTCCEEEE
T ss_pred hccCCcEEEEcCCCcHHHHHHHHHHHHCCCcEEecCCC--CcccccCC-CeEEEecCChHHHHHHHHHHHHHcCCCEEEE
Confidence 34689999999999999999999999999999999887 67676544 8999999999999999999998889999999
Q ss_pred EEEcCCCccccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcCCceEEEEeccChHHHHHHHHHHH
Q 003821 82 IYEDDATNADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRTESRVFIILQSSLAMGIHLFREAK 161 (793)
Q Consensus 82 i~~dd~~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivvl~~~~~~~~~~l~~a~ 161 (793)
|+.++++| ....+.+++.+++.|++++....++... .++...+.++++.++++|++ .+..+++..++++++
T Consensus 145 i~~~~~~~--~~~~~~~~~~l~~~g~~v~~~~~~~~~~------~~~~~~~~~l~~~~~d~i~~-~~~~~~a~~~~~~~~ 215 (358)
T 3hut_A 145 IGVTTDWG--LSSAQAFRKAFELRGGAVVVNEEVPPGN------RRFDDVIDEIEDEAPQAIYL-AMAYEDAAPFLRALR 215 (358)
T ss_dssp EEESSHHH--HHHHHHHHHHHHHTTCEEEEEEEECTTC------CCCHHHHHHHHHHCCSEEEE-ESCHHHHHHHHHHHH
T ss_pred EecCcHHH--HHHHHHHHHHHHHcCCEEEEEEecCCCC------ccHHHHHHHHHhcCCCEEEE-ccCchHHHHHHHHHH
Confidence 99998899 9999999999999999998877776654 45667888888889999988 788889999999999
Q ss_pred HcCCCCCCeEEEEeCCcccc-------------ceeecccccC-CchhhhHHHHHHHHhhhhcCCCCCCCCcchhhHhHh
Q 003821 162 EMGLVGPDSVWVIASDTITS-------------ALGIKTHFSQ-DSSSYKIFEDQFRSYFRSEYPEDDVSEPGIYALRAY 227 (793)
Q Consensus 162 ~~g~~~~~~~wi~~~~~~~~-------------~~g~~~~~~~-~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~a~~~Y 227 (793)
+.|+..+ |+.+ ++... +....++.+. .+|..++|.++|+++|+. .|+.+++.+|
T Consensus 216 ~~g~~~p---~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~--------~p~~~~~~~y 283 (358)
T 3hut_A 216 ARGSALP---VYGS-SALYSPKFIDLGGPAVEGVRLATAFVLGASDPVVVEFVSAYETLYGA--------IPTLFAAHGY 283 (358)
T ss_dssp HTTCCCC---EEEC-GGGCSHHHHHHHGGGGTTCEEEESCCTTCCSHHHHHHHHHHHHHHSS--------CCCHHHHHHH
T ss_pred HcCCCCc---EEec-CcccCHHHHHHhHHhhCCeEEEeccCCCCCCHHHHHHHHHHHHHHCC--------CCCHHHHHHH
Confidence 9999654 5665 44332 2222333332 357889999999988743 6788999999
Q ss_pred HHHHHHHHHHhhccCCCCChhh-HHHhhhhc-ccccceeeEEEeCCCcCCCCcEEEEEeecceeEEEEEecCC
Q 003821 228 DSITVVAKSIDGMTSDNSSSKI-SLGYILSS-NFTGLSGPISFRGGKLLNSPILRIINMVGKKYKEIDFWLPK 298 (793)
Q Consensus 228 DAv~~la~Al~~~~~~~~~g~~-l~~~l~~~-~f~G~tG~i~Fd~~g~~~~~~~~I~~~~~~~~~~VG~w~~~ 298 (793)
||++++++|+++++. .++.. +.++|+++ +|+|++|+++||++|++....+.|+++++++|+.+....+.
T Consensus 284 da~~~~~~al~~ag~--~~~~~~~~~~l~~~~~~~g~~G~~~f~~~g~~~~~~~~i~~~~~G~~~~~~~~~~~ 354 (358)
T 3hut_A 284 DAVGIMLAAVGRAGP--EVTRESLRDALAATDRYAGVTGITRFDPETRETTKILTRLVVREGDFRVIDREGHH 354 (358)
T ss_dssp HHHHHHHHHHHHHCT--TCCHHHHHHHHHTCCSEEETTEEEEECTTTCCEEECCEEEEEETTEEEEC------
T ss_pred HHHHHHHHHHHHhCC--CChHHHHHHHHHhcCCCcCCceeeEECCCCCcCCCceEEEEEECCEEEEecccccc
Confidence 999999999999987 67888 99999999 89999999999999997567899999999999888766554
No 25
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}
Probab=99.96 E-value=1.6e-28 Score=271.02 Aligned_cols=265 Identities=9% Similarity=0.002 Sum_probs=214.3
Q ss_pred CCcccceEEEEcCCChhhHHHHHHhccCCCccEEeeeCCCCCCCCC------CCCCCeEEEecCChHHHHHHHHHHHhhc
Q 003821 1 MIKEKEVKVIVGMETWGAATMVADIGSRAQVPVLSFAEPAIAPPLT------STRWPFLVRMANSSAEQITCTAALVGSY 74 (793)
Q Consensus 1 Li~~~~V~aiiGp~~s~~~~~va~i~~~~~iP~Is~~~~~~~~~l~------~~~~~~~~r~~p~~~~~~~ai~~ll~~~ 74 (793)
|+.+++|.+||||.+|..+.+++++++.++||+|++++. +.++ ...++|+||+.|++..++.+++++++++
T Consensus 78 li~~~~v~aiiG~~~s~~~~a~~~~~~~~~ip~i~~~~~---~~~~~~~~~~~~~~~~~f~~~p~~~~~~~~~~~~~~~~ 154 (419)
T 3h5l_A 78 LIDRDNASALIAGYNLENGTALHDVAADAGVIAMHANTV---AVHDEMVKSDPDRYWGTFQYDPPETLYGGGFLKFLKDI 154 (419)
T ss_dssp HHHTTCCSEEECSCCSSCSCHHHHHHHHHTCEEEECCCC---HHHHHHHHHCTTTCTTEEESSCCTHHHHHHHHHHHHHH
T ss_pred HhhhcCCeEEEccccchhHHHhHHHHHHcCCeEEEcCcc---hhhhhhhhcCcccCceEEEeCCchHHHHHHHHHHHHHH
Confidence 345689999999999999999999999999999997543 3221 1468999999999999999999999876
Q ss_pred --------CceEEEEEEEcCCCccccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcCCceEEEEe
Q 003821 75 --------NWRKVIIIYEDDATNADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRTESRVFIIL 146 (793)
Q Consensus 75 --------~w~~vaii~~dd~~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivvl 146 (793)
+|++|++||++++|| ....+.+++.+++.|++++....++... .|+..++.+|++.++|+|++
T Consensus 155 ~~~~~~~~~~~~vail~~~~~~g--~~~~~~~~~~~~~~g~~vv~~~~~~~~~------~d~~~~l~~i~~~~~d~v~~- 225 (419)
T 3h5l_A 155 EDNGEFSRPNNKIAIITGPGIYS--VNIANAIRDGAGEYGYDVSLFETVAIPV------SDWGPTLAKLRADPPAVIVV- 225 (419)
T ss_dssp HHTTSCCCSSSEEEEEECSSHHH--HHHHHHHHHHGGGGTCEEEEEEECCSSC------SCCHHHHHHHHHSCCSEEEE-
T ss_pred HhhccccCCCCEEEEEEcCcchh--HHHHHHHHHHHHHcCCeEEEEecCCCCC------ccHHHHHHHHHhcCCCEEEE-
Confidence 899999999999999 9999999999999999999888888765 56888999999999999988
Q ss_pred ccC-hHHHHHHHHHHHHcCCCCCCeEEEEeCCcccc-------------ceeecccccCCchhhhHHHHHHHHhhhhcCC
Q 003821 147 QSS-LAMGIHLFREAKEMGLVGPDSVWVIASDTITS-------------ALGIKTHFSQDSSSYKIFEDQFRSYFRSEYP 212 (793)
Q Consensus 147 ~~~-~~~~~~~l~~a~~~g~~~~~~~wi~~~~~~~~-------------~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~ 212 (793)
.+. ++++..+++++++.|+. ..|+.+ ++... ++....+....++..++|.++|+++|+.
T Consensus 226 ~~~~~~~~~~~~~~~~~~g~~---~~~~~~-~~~~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~f~~~~~~~~g~--- 298 (419)
T 3h5l_A 226 THFYPQDQALFMNQFMTDPTN---SLVYLQ-YGASLAAFRDIAGDNSVGVTYATVLGTLQDEMGDAFAKAYKERYGD--- 298 (419)
T ss_dssp CCCCHHHHHHHHHHHTTSCCS---CEEEEC-SGGGSHHHHHHHGGGGTTCEEEESSCCCSSHHHHHHHHHHHHHHCT---
T ss_pred ccccCchHHHHHHHHHHcCCC---ceEEec-CCCCcHHHHHhhhhhcCceEEeecCCCCCCHHHHHHHHHHHHHhCC---
Confidence 654 57899999999999993 356665 44332 1111222223457889999999998853
Q ss_pred CCCCCCc-chhhHhHhHHHHHHHHHHhhccCC-----CCChhhHHHhhhhcccccceeeEEEeCCCcCC-----------
Q 003821 213 EDDVSEP-GIYALRAYDSITVVAKSIDGMTSD-----NSSSKISLGYILSSNFTGLSGPISFRGGKLLN----------- 275 (793)
Q Consensus 213 ~~~~~~~-~~~a~~~YDAv~~la~Al~~~~~~-----~~~g~~l~~~l~~~~f~G~tG~i~Fd~~g~~~----------- 275 (793)
.| +.+++.+|||++++++|++++++. +.++..+.++|++++|+|++|.++||++|++.
T Consensus 299 -----~p~~~~a~~~Yda~~~~~~a~~~a~~~~~~g~~~~~~~l~~al~~~~~~g~~G~i~f~~~g~~~~~~~~~~~~~~ 373 (419)
T 3h5l_A 299 -----LSSTASGCQTYSALYAYSIAAALAGGPGAPYDDVQNKAVADRLRSLIFRGPVGTMRFHADTQSAWSYPTETNDPS 373 (419)
T ss_dssp -----TSCHHHHHHHHHHHHHHHHHHHHTTSCCCTTCHHHHHHHHHHHHHCEEEETTEEEEBCTTTCBBCEETTTCSCTT
T ss_pred -----CCCcchhHHHHHHHHHHHHHHHHhcCCccCCCccCHHHHHHHHHhCCcccCceEEEECCCCCccccccCccCCcc
Confidence 34 368999999999999999998752 13578899999999999999999999999843
Q ss_pred -CCcEEEEEeeccee
Q 003821 276 -SPILRIINMVGKKY 289 (793)
Q Consensus 276 -~~~~~I~~~~~~~~ 289 (793)
...+.|++++++++
T Consensus 374 ~~~~~~i~q~q~g~~ 388 (419)
T 3h5l_A 374 LGMPHIFSQIFDKAE 388 (419)
T ss_dssp SSEECEEEECCCTTS
T ss_pred ccCCceEEEeeCCce
Confidence 12345777776666
No 26
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=99.95 E-value=7.8e-28 Score=260.78 Aligned_cols=269 Identities=18% Similarity=0.237 Sum_probs=225.7
Q ss_pred CcccceEEEEcCCChhhHHHHHHhccCCCccEEeeeCCCCCCCCCCCCCCeEEEecCChHHHHHHHHHHHhhcCceEEEE
Q 003821 2 IKEKEVKVIVGMETWGAATMVADIGSRAQVPVLSFAEPAIAPPLTSTRWPFLVRMANSSAEQITCTAALVGSYNWRKVII 81 (793)
Q Consensus 2 i~~~~V~aiiGp~~s~~~~~va~i~~~~~iP~Is~~~~~~~~~l~~~~~~~~~r~~p~~~~~~~ai~~ll~~~~w~~vai 81 (793)
+.+++|.+||||.+|..+.++++++...+||+|++.++ ++.++.. +|++||+.|++..++.++++++.++||++|++
T Consensus 68 i~~~~v~~iiG~~~s~~~~~~~~~~~~~~ip~i~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~ 144 (368)
T 4eyg_A 68 IVNDKVNVIAGFGITPAALAAAPLATQAKVPEIVMAAG--TSIITER-SPYIVRTSFTLAQSSIIIGDWAAKNGIKKVAT 144 (368)
T ss_dssp HHTSCCSEEEECSSHHHHHHHHHHHHHHTCCEEESSCC--CGGGGGG-CTTEEESSCCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred HhcCCcEEEECCCccHHHHHHHHHHHhCCceEEeccCC--ChhhccC-CCCEEEecCChHHHHHHHHHHHHHcCCCEEEE
Confidence 44589999999999999999999999999999999887 6666654 89999999999999999999999999999999
Q ss_pred EEEcCCCccccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcCCceEEEEeccChHHHHHHHHHHH
Q 003821 82 IYEDDATNADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRTESRVFIILQSSLAMGIHLFREAK 161 (793)
Q Consensus 82 i~~dd~~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivvl~~~~~~~~~~l~~a~ 161 (793)
|+.++.+| ....+.+++.+++.|++++....++... .++...+.++++.++++|++ .+...++..++++++
T Consensus 145 i~~~~~~g--~~~~~~~~~~l~~~g~~v~~~~~~~~~~------~d~~~~~~~l~~~~~d~v~~-~~~~~~a~~~~~~~~ 215 (368)
T 4eyg_A 145 LTSDYAPG--NDALAFFKERFTAGGGEIVEEIKVPLAN------PDFAPFLQRMKDAKPDAMFV-FVPAGQGGNFMKQFA 215 (368)
T ss_dssp EEESSHHH--HHHHHHHHHHHHHTTCEEEEEEEECSSS------CCCHHHHHHHHHHCCSEEEE-ECCTTCHHHHHHHHH
T ss_pred EecCchHh--HHHHHHHHHHHHHcCCEEEEEEeCCCCC------CcHHHHHHHHHhcCCCEEEE-eccchHHHHHHHHHH
Confidence 99998898 8889999999999999998887777655 45778899999889999988 788889999999999
Q ss_pred HcCCCCCCeEEEEeCCcccc-------------ceeeccccc-CCchhhhHHHHHHHHhhhhcCCCCCCCCcchhhHhHh
Q 003821 162 EMGLVGPDSVWVIASDTITS-------------ALGIKTHFS-QDSSSYKIFEDQFRSYFRSEYPEDDVSEPGIYALRAY 227 (793)
Q Consensus 162 ~~g~~~~~~~wi~~~~~~~~-------------~~g~~~~~~-~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~a~~~Y 227 (793)
+.|+..+++.|+.+ ++..+ ++...++.+ ..+|..++|.++| ++|.. ..|+.+++.+|
T Consensus 216 ~~g~~~~~v~~~~~-~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~f~~~~-~~~~~-------~~p~~~~~~~y 286 (368)
T 4eyg_A 216 ERGLDKSGIKVIGP-GDVMDDDLLNSMGDAALGVVTAHMYSAAHPSAMNKEFVAAY-KKEFG-------QRPGFMAVGGY 286 (368)
T ss_dssp HTTGGGTTCEEEEE-TTTTCHHHHTTCCGGGTTCEEEESCCTTCCSHHHHHHHHHH-HHHHS-------SCCCHHHHHHH
T ss_pred HcCCCcCCceEEec-CcccCHHHHHhhhhhhCCeEEeeecCCCCCCHHHHHHHHHH-HHhCC-------CCCChHHHHHH
Confidence 99998766778877 53222 222222322 2357889999999 77732 25778999999
Q ss_pred HHHHHHHHHHhhccCCCCChhhHHHhhhhcccccceeeEEEe-CCCcCCCCcEEEEEee--cceeEEEE
Q 003821 228 DSITVVAKSIDGMTSDNSSSKISLGYILSSNFTGLSGPISFR-GGKLLNSPILRIINMV--GKKYKEID 293 (793)
Q Consensus 228 DAv~~la~Al~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~Fd-~~g~~~~~~~~I~~~~--~~~~~~VG 293 (793)
||++++++|+++++.. .++..|.++|++++|+|++|+++|| ++|+. ...+.|.++. ++.++.|.
T Consensus 287 da~~~~~~al~~~g~~-~~~~~l~~al~~~~~~g~~G~i~f~~~~~~~-~~~~~i~~~~~~~G~~~~v~ 353 (368)
T 4eyg_A 287 DGIHLVFEALKKTGGK-ADGDSLIAAMKGMKWESPRGPISIDPETRDI-VQNIYIRKVEKVDGELYNIE 353 (368)
T ss_dssp HHHHHHHHHHHHTTTC-CSHHHHHHHHTTCEEEETTEEEEECTTTCCE-EEEEEEEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHhCCC-CCHHHHHHHHHcCCcccCCCCeEECcccCCc-ccceEEEEEEecCCeEEEEE
Confidence 9999999999999843 6899999999999999999999999 66664 5678898888 77775543
No 27
>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A 1z17_A 1z18_A 2liv_A
Probab=99.95 E-value=1.2e-27 Score=256.91 Aligned_cols=264 Identities=12% Similarity=0.168 Sum_probs=218.9
Q ss_pred ccceEEEEcCCChhhHHHHHHhccCCCccEEeeeCCCCCCCCCCCCCCeEEEecCChHHHHHHHHHHH-hhcCceEEEEE
Q 003821 4 EKEVKVIVGMETWGAATMVADIGSRAQVPVLSFAEPAIAPPLTSTRWPFLVRMANSSAEQITCTAALV-GSYNWRKVIII 82 (793)
Q Consensus 4 ~~~V~aiiGp~~s~~~~~va~i~~~~~iP~Is~~~~~~~~~l~~~~~~~~~r~~p~~~~~~~ai~~ll-~~~~w~~vaii 82 (793)
+++|.+||||.+|..+.++++++...++|+|++.++ ++.+++..++++||+.|++..++.++++++ +++||++|++|
T Consensus 67 ~~~v~~iig~~~s~~~~~~~~~~~~~~ip~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~i~~i 144 (346)
T 1usg_A 67 NDGIKYVIGHLCSSSTQPASDIYEDEGILMISPGAT--NPELTQRGYQHIMRTAGLDSSQGPTAAKYILETVKPQRIAII 144 (346)
T ss_dssp HTTCCEEECCSSHHHHHHHHHHHHHHTCEEEECCCC--CGGGGSSCCSSEEECSCCGGGHHHHHHHHHHHTTCCSSEEEE
T ss_pred hCCCCEEEcCCCcHHHHHHHHHHHHCCCeEEeeCCC--ChHHhcCCCCcEEeccCChHHHHHHHHHHHHHhcCCCeEEEE
Confidence 368999999999999999999999999999999887 666765557899999999999999999998 55899999999
Q ss_pred EEcCCCccccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcCCceEEEEeccChHHHHHHHHHHHH
Q 003821 83 YEDDATNADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRTESRVFIILQSSLAMGIHLFREAKE 162 (793)
Q Consensus 83 ~~dd~~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivvl~~~~~~~~~~l~~a~~ 162 (793)
+.++++| ....+.+++.+++.|++++....++... .++...+.++++.++++|++ .+....+..+++++++
T Consensus 145 ~~~~~~~--~~~~~~~~~~l~~~g~~v~~~~~~~~~~------~d~~~~~~~l~~~~~d~i~~-~~~~~~a~~~~~~~~~ 215 (346)
T 1usg_A 145 HDKQQYG--EGLARSVQDGLKAANANVVFFDGITAGE------KDFSALIARLKKENIDFVYY-GGYYPEMGQMLRQARS 215 (346)
T ss_dssp ECSSHHH--HHHHHHHHHHHHHTTCCEEEEEECCTTC------CCCHHHHHHHHHTTCCEEEE-ESCHHHHHHHHHHHHH
T ss_pred ECCCchH--HHHHHHHHHHHHHcCCEEEEEeccCCCC------cCHHHHHHHHHhcCCCEEEE-cCcchHHHHHHHHHHH
Confidence 9988888 8889999999999999988766666543 34567788888889999988 7778889999999999
Q ss_pred cCCCCCCeEEEEeCCcccc-------------ceeecccccCCchhhhHHHHHHHHhhhhcCCCCCCCCcchhhHhHhHH
Q 003821 163 MGLVGPDSVWVIASDTITS-------------ALGIKTHFSQDSSSYKIFEDQFRSYFRSEYPEDDVSEPGIYALRAYDS 229 (793)
Q Consensus 163 ~g~~~~~~~wi~~~~~~~~-------------~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~a~~~YDA 229 (793)
.|+..+ |+.+ ++..+ ++...++.+..+|..++|.++|+++|+ ..|+.+++.+|||
T Consensus 216 ~g~~~~---~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~--------~~~~~~~~~~yda 283 (346)
T 1usg_A 216 VGLKTQ---FMGP-EGVGNASLSNIAGDAAEGMLVTMPKRYDQDPANQGIVDALKADKK--------DPSGPYVWITYAA 283 (346)
T ss_dssp TTCCCE---EEEC-GGGCCTTHHHHHGGGGTTCEEEECCCGGGSGGGHHHHHHHHHTTC--------CCCCHHHHHHHHH
T ss_pred cCCCCe---EEec-CCCCcHHHHHHhhHhhCCeEEecCCCCCCCHHHHHHHHHHHHHhC--------CCCchhHHHHHHH
Confidence 999654 6766 43321 222222222234778899999887763 3567789999999
Q ss_pred HHHHHHHHhhccCCCCChhhHHHhhhhcccccceeeEEEeCCCcCCCCcEEEEEee-cceeEEE
Q 003821 230 ITVVAKSIDGMTSDNSSSKISLGYILSSNFTGLSGPISFRGGKLLNSPILRIINMV-GKKYKEI 292 (793)
Q Consensus 230 v~~la~Al~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~Fd~~g~~~~~~~~I~~~~-~~~~~~V 292 (793)
++++++|+++++. .+++.+.++|++.+|+|++|+++||++|++....+.|++++ ++.++.|
T Consensus 284 ~~~~~~al~~~g~--~~~~~l~~~l~~~~~~g~~G~i~f~~~g~~~~~~~~i~~~~~~G~~~~~ 345 (346)
T 1usg_A 284 VQSLATALERTGS--DEPLALVKDLKANGANTVIGPLNWDEKGDLKGFDFGVFQWHADGSSTKA 345 (346)
T ss_dssp HHHHHHHHHHHCC--CCHHHHHHHHHHHCEEETTEEECBCTTSSBSSCCCEEEEECTTSCEEEC
T ss_pred HHHHHHHHHHhCC--CCHHHHHHHHHhCCCccceeeeEECCCCCccCCceEEEEEecCCEEEec
Confidence 9999999999987 68999999999999999999999999999876789999998 7777654
No 28
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=99.95 E-value=1.7e-27 Score=260.35 Aligned_cols=278 Identities=11% Similarity=0.092 Sum_probs=227.8
Q ss_pred CcccceEEEEcCCChhhHHHHHHhccCCCccEEeeeCCCCCCCCCCCCCCeEEEecCChHHHHHHHHHHHhh-cCceEEE
Q 003821 2 IKEKEVKVIVGMETWGAATMVADIGSRAQVPVLSFAEPAIAPPLTSTRWPFLVRMANSSAEQITCTAALVGS-YNWRKVI 80 (793)
Q Consensus 2 i~~~~V~aiiGp~~s~~~~~va~i~~~~~iP~Is~~~~~~~~~l~~~~~~~~~r~~p~~~~~~~ai~~ll~~-~~w~~va 80 (793)
+.+++|.+||| .+|..+.++++++...+||+|+++++ ++......++++||+.|++..++.++++++.. +||++|+
T Consensus 71 i~~~~V~~iig-~~s~~~~~~~~~~~~~~iP~i~~~~~--~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~~g~~~ia 147 (392)
T 3lkb_A 71 VDRFKIPVFLS-YATGANLQLKPLIQELRIPTIPASMH--IELIDPPNNDYIFLPTTSYSEQVVALLEYIAREKKGAKVA 147 (392)
T ss_dssp HHTTCCSCEEE-CCHHHHHHHHHHHHHHTCCEEESCCC--GGGGSSSSCTTBCEEECCHHHHHHHHHHHHHHHCTTCEEE
T ss_pred HhhcCcEEEEe-CCcHHHHHHHHHHHhCCceEEecccC--hhhccCCCCCceEecCCChHHHHHHHHHHHHHhCCCCEEE
Confidence 44568999999 68999999999999999999998765 33223356889999999999999999998876 6999999
Q ss_pred EEEEcCCCccccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcCCceEEEEeccChHHHHHHHHHH
Q 003821 81 IIYEDDATNADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRTESRVFIILQSSLAMGIHLFREA 160 (793)
Q Consensus 81 ii~~dd~~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivvl~~~~~~~~~~l~~a 160 (793)
+|+++++|| ....+.+++.+++.|++++....++... .++...+.++++.++++|++ .+...++..+++++
T Consensus 148 ii~~~~~~g--~~~~~~~~~~l~~~G~~v~~~~~~~~~~------~d~~~~~~~l~~~~~dav~~-~~~~~~a~~~~~~~ 218 (392)
T 3lkb_A 148 LVVHPSPFG--RAPVEDARKAARELGLQIVDVQEVGSGN------LDNTALLKRFEQAGVEYVVH-QNVAGPVANILKDA 218 (392)
T ss_dssp EEECSSHHH--HTTHHHHHHHHHHHTCEEEEEEECCTTC------CCCHHHHHHHHHTTCCEEEE-ESCHHHHHHHHHHH
T ss_pred EEEeCCchh--hhHHHHHHHHHHHcCCeEEEEEeeCCCC------cCHHHHHHHHHhcCCCEEEE-ecCcchHHHHHHHH
Confidence 999998899 9999999999999999998887777654 45778899999999999988 78999999999999
Q ss_pred HHcCCCCCCeEEEEeCCcccc-------------ceeecccc-cCCchhhhHHHHHHHHhhhhcCCCCCCCCcch----h
Q 003821 161 KEMGLVGPDSVWVIASDTITS-------------ALGIKTHF-SQDSSSYKIFEDQFRSYFRSEYPEDDVSEPGI----Y 222 (793)
Q Consensus 161 ~~~g~~~~~~~wi~~~~~~~~-------------~~g~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~----~ 222 (793)
++.|+..+ |+.+ ++..+ +....++. +..++..++|.++|+++|+. .|+. +
T Consensus 219 ~~~g~~~~---~~~~-~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~--------~p~~~~~~~ 286 (392)
T 3lkb_A 219 KRLGLKMR---HLGA-HYTGGPDLIALAGDAAEGFLWATSFYMAHEDTPGIRLQKEIGRKYGR--------PENFIESVN 286 (392)
T ss_dssp HHTTCCCE---EEEC-GGGCSHHHHHHHGGGGTTCEEEESBCCTTSCCHHHHHHHHHHHHTTC--------CHHHHTCHH
T ss_pred HHcCCCce---EEEe-cCcccHHHHHhhhhhhcCeEEEEeecCCCCCchhHHHHHHHHHHhCC--------Ccccccchh
Confidence 99999643 5555 44332 22222222 22245678899999988743 3443 4
Q ss_pred hHhHhHHHHHHHHHHhhccC--CCCChhhHHHhhhhcc----cc-------cceeeEEEeCCCcCCCCcEEEEEeeccee
Q 003821 223 ALRAYDSITVVAKSIDGMTS--DNSSSKISLGYILSSN----FT-------GLSGPISFRGGKLLNSPILRIINMVGKKY 289 (793)
Q Consensus 223 a~~~YDAv~~la~Al~~~~~--~~~~g~~l~~~l~~~~----f~-------G~tG~i~Fd~~g~~~~~~~~I~~~~~~~~ 289 (793)
++.+|||++++++|+++++. ...+++.+.++|++++ |+ |++|+++|+++|++....+.|++++++++
T Consensus 287 ~~~~yda~~~~~~al~~ag~~~~~~~~~~v~~aL~~~~~~~~~~~~~~~~~G~~G~i~f~~~~~~~~~~~~i~~~~~g~~ 366 (392)
T 3lkb_A 287 YTNGMLAAAIAVEAIRRAQERFKRITNETVYQAIVGMNGPNAFKPGFAVSTKQGVEIDFTKSEHTGAEGLRILEAKGGRF 366 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHTCCGGGCBCCSSBCCCSSSCSBCCCSSCCEEECCBEEEEEETTEE
T ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHhcCCCcCcccccccccccceeeEeCCCCcCCcccEEEEEEeCCEE
Confidence 79999999999999999975 1268999999999997 88 99999999998887677899999999999
Q ss_pred EEEEEecCCCCCcc
Q 003821 290 KEIDFWLPKFGLSK 303 (793)
Q Consensus 290 ~~VG~w~~~~g~~~ 303 (793)
+.|+.|....++..
T Consensus 367 ~~v~~w~~~~~~~~ 380 (392)
T 3lkb_A 367 VPVTEPFTSALFRK 380 (392)
T ss_dssp EECSCCBCCHHHHH
T ss_pred EEeccccchhHHHh
Confidence 99999988766543
No 29
>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum}
Probab=99.94 E-value=1.6e-26 Score=249.99 Aligned_cols=265 Identities=11% Similarity=0.103 Sum_probs=221.3
Q ss_pred CcccceEEEEcCCChhhHHHHHH--hccCCCccEEeeeCCCCCCCCCCCCCCeEEEecCChHHHHHHHHHHHhhcCceEE
Q 003821 2 IKEKEVKVIVGMETWGAATMVAD--IGSRAQVPVLSFAEPAIAPPLTSTRWPFLVRMANSSAEQITCTAALVGSYNWRKV 79 (793)
Q Consensus 2 i~~~~V~aiiGp~~s~~~~~va~--i~~~~~iP~Is~~~~~~~~~l~~~~~~~~~r~~p~~~~~~~ai~~ll~~~~w~~v 79 (793)
+.+++|.+||||.+|..+.++++ ++...+||+|++.++ ++.+++ +|++||+.|++..++.++++++.++||++|
T Consensus 69 ~~~~~v~~iig~~~s~~~~~~~~~~~~~~~~iP~v~~~~~--~~~~~~--~~~~f~~~~~~~~~~~~~~~~l~~~g~~~i 144 (364)
T 3lop_A 69 ARVDNPVALLTVVGTANVEALMREGVLAEARLPLVGPATG--ASSMTT--DPLVFPIKASYQQEIDKMITALVTIGVTRI 144 (364)
T ss_dssp HHHSCEEEEECCCCHHHHHHHHHTTHHHHHTCCEESCSCC--CGGGGS--CTTEECCSCCHHHHHHHHHHHHHHTTCCCE
T ss_pred HhhcCcEEEEecCCCHHHHhhCchhhHHhcCCcEEEcccC--cHhhcc--CCcEEEeCCChHHHHHHHHHHHHHcCCceE
Confidence 44569999999999999999999 999999999999887 666655 899999999999999999999999999999
Q ss_pred EEEEEcCCCccccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcCCceEEEEeccChHHHHHHHHH
Q 003821 80 IIIYEDDATNADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRTESRVFIILQSSLAMGIHLFRE 159 (793)
Q Consensus 80 aii~~dd~~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivvl~~~~~~~~~~l~~ 159 (793)
++|+.+++|| ....+.+++.+++.|++++....++... .++...+.++++.++++|++ .+...++..++++
T Consensus 145 aii~~~~~~g--~~~~~~~~~~~~~~G~~v~~~~~~~~~~------~d~~~~~~~l~~~~~d~v~~-~~~~~~a~~~~~~ 215 (364)
T 3lop_A 145 GVLYQEDALG--KEAITGVERTLKAHALAITAMASYPRNT------ANVGPAVDKLLAADVQAIFL-GATAEPAAQFVRQ 215 (364)
T ss_dssp EEEEETTHHH--HHHHHHHHHHHHTTTCCCSEEEEECTTS------CCCHHHHHHHHHSCCSEEEE-ESCHHHHHHHHHH
T ss_pred EEEEeCchhh--HHHHHHHHHHHHHcCCcEEEEEEecCCC------ccHHHHHHHHHhCCCCEEEE-ecCcHHHHHHHHH
Confidence 9999999999 9999999999999999998777777655 45778899999999999988 7889999999999
Q ss_pred HHHcCCCCCCeEEEEeCCcccc-----cee---------ec--cc-ccCCchhhhHHHHHHHHhhhhcCCCCCCCCcchh
Q 003821 160 AKEMGLVGPDSVWVIASDTITS-----ALG---------IK--TH-FSQDSSSYKIFEDQFRSYFRSEYPEDDVSEPGIY 222 (793)
Q Consensus 160 a~~~g~~~~~~~wi~~~~~~~~-----~~g---------~~--~~-~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 222 (793)
+++.|+..+ |+.. ++... ..+ .. ++ .....|..++|.++|+++++. ...|+.+
T Consensus 216 ~~~~g~~~~---~i~~-~~~~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~------~~~p~~~ 285 (364)
T 3lop_A 216 YRARGGEAQ---LLGL-SSIDPGILQKVAGLDAVRGYSLALVMPNPGKSVNPVIREFNRARAAVGAK------DVDLSFR 285 (364)
T ss_dssp HHHTTCCCE---EEEC-TTSCHHHHHHHHCHHHHTTCEEEECSCCTTCTTSHHHHHHHHHHHHHTCT------TCCCCHH
T ss_pred HHHcCCCCe---EEEe-ccCChHHHHHHhChhhcCCeEEEEEeCCCCCCCCHHHHHHHHHHHHhcCC------CCCCChH
Confidence 999999755 5555 44322 111 11 11 113457889999999887632 1267889
Q ss_pred hHhHhHHHHHHHHHHhhccCCCCChhhHHHhhhhc-cccc-ceeeEEEeCCCcCCCCcEEEEEeecceeE
Q 003821 223 ALRAYDSITVVAKSIDGMTSDNSSSKISLGYILSS-NFTG-LSGPISFRGGKLLNSPILRIINMVGKKYK 290 (793)
Q Consensus 223 a~~~YDAv~~la~Al~~~~~~~~~g~~l~~~l~~~-~f~G-~tG~i~Fd~~g~~~~~~~~I~~~~~~~~~ 290 (793)
++.+|||++++++|+++++.. .++..+.++|+++ +|+| .+|+++|++++++......|.++.++++.
T Consensus 286 a~~~yda~~~~~~al~~ag~~-~~~~~v~~aL~~~~~~~~~~~g~i~f~~~~~~~~~~~~i~~~~~~~~~ 354 (364)
T 3lop_A 286 AVEGFVAAKVLAEAIRRAGPK-PTREQVRHALTELRDYDVGGGFTVDFTDRSRPGSHYIELGVVGPNGLV 354 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHCSS-CCHHHHHHHHHTCEEEESSTTCEEECSSTTSCSCCCCEEEEECTTSCE
T ss_pred HHHHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHhcCCccCCCCeeeecCCCCcCCcceEEEEEEcCCCcc
Confidence 999999999999999999743 6899999999999 6999 99999999888777777888888876643
No 30
>3eaf_A ABC transporter, substrate binding protein; PSI2, NYSGXRC, substrate binding P structural genomics, protein structure initiative; 2.00A {Aeropyrum pernix}
Probab=99.94 E-value=2.5e-26 Score=250.92 Aligned_cols=269 Identities=14% Similarity=0.125 Sum_probs=224.0
Q ss_pred CcccceEEEEcCCChhhHHHHHHhccCCCccEEeeeCCCCCCCCCCCCCCeEEEecCChHHHHHHHHHHHhh-cCceEEE
Q 003821 2 IKEKEVKVIVGMETWGAATMVADIGSRAQVPVLSFAEPAIAPPLTSTRWPFLVRMANSSAEQITCTAALVGS-YNWRKVI 80 (793)
Q Consensus 2 i~~~~V~aiiGp~~s~~~~~va~i~~~~~iP~Is~~~~~~~~~l~~~~~~~~~r~~p~~~~~~~ai~~ll~~-~~w~~va 80 (793)
+.+++|.+||| .+|..+.+++++++..+||+|+++++ ++ +. .+|++||+.|++..++.++++++.. +||++|+
T Consensus 72 i~~~~V~~iiG-~~s~~~~a~~~~~~~~~iP~i~~~~~--~~-~~--~~~~~f~~~~~~~~~~~~~~~~l~~~~g~~~ia 145 (391)
T 3eaf_A 72 RDRYGVIAIIG-WGTADTEKLSDQVDTDKITYISASYS--AK-LL--VKPFNFYPAPDYSTQACSGLAFLASEFGQGKLA 145 (391)
T ss_dssp HHTTCCSEEEE-CCHHHHHHHHHHHHHHTCEEEESCCC--GG-GT--TSTTEECSSCCHHHHHHHHHHHHHHHHCSEEEE
T ss_pred HhhcCcEEEEE-cCcHHHHHHHHHHhhcCCeEEecccc--hh-hc--CCCcEEEeCCCHHHHHHHHHHHHHHhcCCCEEE
Confidence 44678999999 68999999999999999999998766 33 33 6789999999999999999999877 7999999
Q ss_pred EEEE-cCCCccccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHH--hhcCCceEEEEeccChHHHHHHH
Q 003821 81 IIYE-DDATNADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLK--LLRTESRVFIILQSSLAMGIHLF 157 (793)
Q Consensus 81 ii~~-dd~~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~--l~~~~~~vivvl~~~~~~~~~~l 157 (793)
+|++ +++|| ....+.+++.+++.|++++....++... .++...+.+ +++.++++|++ .+...++..++
T Consensus 146 ii~~~~~~~g--~~~~~~~~~~l~~~G~~v~~~~~~~~~~------~d~~~~~~~~~l~~~~~dav~~-~~~~~~~~~~~ 216 (391)
T 3eaf_A 146 LAYDSKVAYS--RSPIGAIKKAAPSLGLQVVGDYDLPLRA------TEADAERIAREMLAADPDYVWC-GNTISSCSLLG 216 (391)
T ss_dssp EEECTTCHHH--HTTHHHHHHHTGGGTEEEEEEEECCTTC------CHHHHHHHHHHHHTTCCSEEEE-CSCHHHHHHHH
T ss_pred EEEecCChhH--HHHHHHHHHHHHHcCCceeeeeccCCCC------cCHHHHHHHHHHHHcCCCEEEE-ecCcHHHHHHH
Confidence 9999 88899 9999999999999999998888887755 679999999 99999999998 88889999999
Q ss_pred HHHHHcCCCCCCeEEEEeCCcccc----------cee----ecccc--c--CCchhhhHHHHHHHHhhhhcCCCCCCCCc
Q 003821 158 REAKEMGLVGPDSVWVIASDTITS----------ALG----IKTHF--S--QDSSSYKIFEDQFRSYFRSEYPEDDVSEP 219 (793)
Q Consensus 158 ~~a~~~g~~~~~~~wi~~~~~~~~----------~~g----~~~~~--~--~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 219 (793)
+++++.|+..+ ++.+ ++..+ ..| ..++. + ...|. .+|.++|+++|+. ..|
T Consensus 217 ~~~~~~g~~~~---~~~~-~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~-~~f~~~~~~~~~~-------~~p 284 (391)
T 3eaf_A 217 RAMAKVGLDAF---LLTN-VWGFDERSPQLIGEGGYGKVFGISPFIYPMFGQDVEG-IQTIFEAARMNGV-------SED 284 (391)
T ss_dssp HHHHHHTCCCE---EEEC-GGGCSTTHHHHHCGGGTTSEEEEESBCCGGGCTTCHH-HHHHHHHHHHTTC-------CGG
T ss_pred HHHHHCCCCce---EEEe-ccCCCHHHHHhhhhhccCcEEEEEEecCcccCCCCch-hHHHHHHHHHhCC-------CCc
Confidence 99999999654 4444 44322 222 12222 1 22344 6799999988742 234
Q ss_pred --chhhHhHhHHHHHHHHHHhhc---c--CCCCChhhHHHhhhhcccc--ccee-eEEEeCCCcCCCCcEEEEEe-ecce
Q 003821 220 --GIYALRAYDSITVVAKSIDGM---T--SDNSSSKISLGYILSSNFT--GLSG-PISFRGGKLLNSPILRIINM-VGKK 288 (793)
Q Consensus 220 --~~~a~~~YDAv~~la~Al~~~---~--~~~~~g~~l~~~l~~~~f~--G~tG-~i~Fd~~g~~~~~~~~I~~~-~~~~ 288 (793)
+.+++.+|||++++++|++++ + . .++..+.++|++.+|+ |++| +++||++|++....+.|+++ .++.
T Consensus 285 ~~~~~~~~~yda~~~l~~Al~~a~~~g~~~--~~~~~v~~aL~~~~~~~~G~~G~~i~f~~~~~~~~~~~~i~~~~~~G~ 362 (391)
T 3eaf_A 285 QINLRVVQGFVNVWLLIKAIESVTSQDLQE--RGGEALKEALEANTFDLGGITADTIDYEPGFHLAYRKVFIIKLGENGE 362 (391)
T ss_dssp GCCHHHHHHHHHHHHHHHHHTTSCHHHHHH--HTHHHHHHHHHHCCBCSTTCBSSCBCCBTTBCCCCCCEEEEEECTTSS
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHhcCCCC--CCHHHHHHHHHhCCCCCCCccccceeeCCCCCCcceEEEEEEEecCCE
Confidence 478999999999999999999 6 4 6899999999998898 9999 99999877767888999999 8899
Q ss_pred eEEEEEecCCC
Q 003821 289 YKEIDFWLPKF 299 (793)
Q Consensus 289 ~~~VG~w~~~~ 299 (793)
++.|+.|....
T Consensus 363 ~~~v~~~~~~~ 373 (391)
T 3eaf_A 363 LQLMGKFEAPS 373 (391)
T ss_dssp EEEEEEECCCT
T ss_pred EEEeeeecCcc
Confidence 99999997644
No 31
>3n0x_A Possible substrate binding protein of ABC transpo system; receptor family ligand binding region, structural genomics; HET: MSE; 1.50A {Rhodopseudomonas palustris} PDB: 3nnd_B
Probab=99.94 E-value=5.9e-27 Score=254.26 Aligned_cols=263 Identities=10% Similarity=0.142 Sum_probs=210.5
Q ss_pred CCcccceEEEEcCCChhhHHHHHHhccCCCccEEeeeCCCCCCCCCCC-CCCeEEEecCChHHHHHHHHHHHhhcCceEE
Q 003821 1 MIKEKEVKVIVGMETWGAATMVADIGSRAQVPVLSFAEPAIAPPLTST-RWPFLVRMANSSAEQITCTAALVGSYNWRKV 79 (793)
Q Consensus 1 Li~~~~V~aiiGp~~s~~~~~va~i~~~~~iP~Is~~~~~~~~~l~~~-~~~~~~r~~p~~~~~~~ai~~ll~~~~w~~v 79 (793)
|+.+++|.+||||.+|..+.+++++++.+++|+|++.++ ++.++.. .+||+||+.|++..++.+++.++++++| +|
T Consensus 68 li~~~~v~aiiG~~~s~~~~a~~~~~~~~~ip~i~~~~~--~~~~~~~~~~~~~fr~~~~~~~~~~~~~~~~~~~~~-~v 144 (374)
T 3n0x_A 68 AYQDDGADIAIGTSSSAAALADLPVAEENKKILIVEPAV--ADQITGEKWNRYIFRTGRNSSQDAISNAVAIGKQGV-TI 144 (374)
T ss_dssp HHHTSCCSEEEECSSHHHHHHHHHHHHHHTCCEEECSCC--CGGGGTTTCCTTEEECSCCHHHHHHHHHHHHCCTTE-EE
T ss_pred HHHhCCceEEEcCCCcHHHHHHHHHHHHcCccEEEcCCC--chhhhcCCCCCeEEEccCCchhHHHHHHHHHhccCC-EE
Confidence 355679999999999999999999999999999998877 6777654 5799999999999999999988888998 79
Q ss_pred EEEEEcCCCccccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcCC-----ceEEEEeccChHHHH
Q 003821 80 IIIYEDDATNADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRTE-----SRVFIILQSSLAMGI 154 (793)
Q Consensus 80 aii~~dd~~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~-----~~vivvl~~~~~~~~ 154 (793)
++|++|++|| ....+.+++.+++.|++++....++... .|+..++.+|++.+ +|+|++ .+.....
T Consensus 145 ~ii~~~~~~g--~~~~~~~~~~~~~~G~~vv~~~~~~~~~------~d~~~~l~~i~~~~~~~~~~d~v~~-~~~g~~~- 214 (374)
T 3n0x_A 145 ATLAQDYAFG--RDGVAAFKEALAKTGATLATEEYVPTTT------TDFTAVGQRLFDALKDKPGKKIIWV-IWAGGGD- 214 (374)
T ss_dssp EEEEESSHHH--HHHHHHHHHHHTTTTCEEEEEEEECTTC------CCCHHHHHHHHHHHTTCSSEEEEEE-CCCSSSC-
T ss_pred EEEeCCchHH--HHHHHHHHHHHHHcCCEEeeeecCCCCC------ccHHHHHHHHHhcCCCCCCCCEEEE-EecCCcH-
Confidence 9999999999 9999999999999999999888888765 56888999999888 999888 5322111
Q ss_pred HHHHHHHHcCCCCCCeEEEEeCCcccc---------ceeeccccc--CCchhhhHHHHHHHHhhhhcCCCCCCCCcchhh
Q 003821 155 HLFREAKEMGLVGPDSVWVIASDTITS---------ALGIKTHFS--QDSSSYKIFEDQFRSYFRSEYPEDDVSEPGIYA 223 (793)
Q Consensus 155 ~~l~~a~~~g~~~~~~~wi~~~~~~~~---------~~g~~~~~~--~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~a 223 (793)
.+.++.++++...++.+.+.+..... ..+...+.+ ..+|..++|.++|+++|+ ..|+.++
T Consensus 215 -~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~y~~~~g--------~~p~~~a 285 (374)
T 3n0x_A 215 -PLTKLQDMDPKRYGIELSTGGNILPALAAYKRLPGMEGATYYYYDIPKNPINEWLVTEHQKRFN--------APPDFFT 285 (374)
T ss_dssp -HHHHHHHTCGGGGTEEEEECCCCTTGGGGGGGSTTCEEEESCCTTSCCSHHHHHHHHHHHHHHS--------SCCCHHH
T ss_pred -HHHHHHHcchhhcCCeeeeccccchhhhhhhhhcCccccceeccCCCCCHHHHHHHHHHHHHHC--------CCCChhH
Confidence 24556666665445555443111111 222222221 134778999999999884 3678899
Q ss_pred HhHhHHHHHHHHHHhhccCCCCChhhHHHhhhhcccccceeeEEEeCCCcCCCCcEEEEEeecc
Q 003821 224 LRAYDSITVVAKSIDGMTSDNSSSKISLGYILSSNFTGLSGPISFRGGKLLNSPILRIINMVGK 287 (793)
Q Consensus 224 ~~~YDAv~~la~Al~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~Fd~~g~~~~~~~~I~~~~~~ 287 (793)
+.+|||++++++|++++++ .++..+.++|++++|+|++|+++||+++++....+.|+++..+
T Consensus 286 ~~~Yda~~~l~~Al~~ag~--~~~~~v~~aL~~~~~~g~~G~i~f~~~~~~~~~~~~i~~~~~~ 347 (374)
T 3n0x_A 286 AGGFSAAMAVVTAVQKAKS--TDTEKLIAAMEGMEFDTPKGKMVFRKEDHQALQSMYHFKVKVD 347 (374)
T ss_dssp HHHHHHHHHHHHHHHHHTS--CCHHHHHHHHTTCEEEETTEEEEECTTTCBEECCEEEEEEECC
T ss_pred HHHHHHHHHHHHHHHHhCC--CCHHHHHHHHhcCCccCCCCCEEECcccCccccceEEEEEEeC
Confidence 9999999999999999998 7899999999999999999999999654445678899998753
No 32
>4gnr_A ABC transporter substrate-binding protein-branche amino acid transport; amino acid-binding protein, surface-exposed protein; HET: MLY; 1.00A {Streptococcus pneumoniae}
Probab=99.94 E-value=8.3e-26 Score=243.25 Aligned_cols=263 Identities=21% Similarity=0.255 Sum_probs=212.0
Q ss_pred CCcccceEEEEcCCChhhHHHHHHhccCCCccEEeeeCCCCCCCCCCCCCCeEEEecCChHHHHHHHHHHHhhc-CceEE
Q 003821 1 MIKEKEVKVIVGMETWGAATMVADIGSRAQVPVLSFAEPAIAPPLTSTRWPFLVRMANSSAEQITCTAALVGSY-NWRKV 79 (793)
Q Consensus 1 Li~~~~V~aiiGp~~s~~~~~va~i~~~~~iP~Is~~~~~~~~~l~~~~~~~~~r~~p~~~~~~~ai~~ll~~~-~w~~v 79 (793)
|+.+++|.+|+||.+|..+.++++++++.++|+|+++++ ++.++. ..+|+||+.|++..++.+++.++... +++++
T Consensus 70 li~~~~v~~i~g~~~s~~~~a~~~~~~~~~vp~i~~~~~--~~~l~~-~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (353)
T 4gnr_A 70 LVTQSKVSAVVGPATSGATAAAVANATKAGVPLISPSAT--QDGLTK-GQDYLFIGTFQDSFQGKIISNYVSEKLNAKKV 146 (353)
T ss_dssp HHHTSCCSEEECCCSHHHHHHHHHHHHHTTCCEEESSCC--CTTTTT-TCTTEEECSCCHHHHHHHHHHHHHHTSCCSEE
T ss_pred HHhhCCceEEeccccCcccceehhhhhccCcceEeeccc--cccccc-CCccccccCCCcHHHHHHHHHHHHHhcCCcEE
Confidence 456788999999999999999999999999999999988 777754 45789999999999999999998665 45556
Q ss_pred EEEEEcC-CCccccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcCCceEEEEeccChHHHHHHHH
Q 003821 80 IIIYEDD-ATNADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRTESRVFIILQSSLAMGIHLFR 158 (793)
Q Consensus 80 aii~~dd-~~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivvl~~~~~~~~~~l~ 158 (793)
+++++++ +|| .+..+.+. +..|.+++....+++.+ .|+..++.++++.++|+|++ .+...++..+++
T Consensus 147 ~~~~~~~~~yg--~~~~~~~~---~~~g~~vv~~~~~~~~~------~d~~~~l~~i~~~~~d~v~~-~~~~~~~~~~~~ 214 (353)
T 4gnr_A 147 VLYTDNASDYA--KGIAKSFR---ESYKGEIVADETFVAGD------TDFQAALTKMKGKDFDAIVV-PGYYNEAGKIVN 214 (353)
T ss_dssp EEEEETTCHHH--HHHHHHHH---HHCCSEEEEEEEECTTC------CCCHHHHHHHHTSCCSEEEC-CSCHHHHHHHHH
T ss_pred EEEEcCchHHH--HHHHHHHH---HHcCCEEEEEEeeCCCC------CCHHHHHHHHHhcCCCEEEE-ecCcHHHHHHHH
Confidence 6666554 487 66555554 35688999988998876 57889999999999999998 899999999999
Q ss_pred HHHHcCCCCCCeEEEEeCCcccc--------------ceeeccccc--CCchhhhHHHHHHHHhhhhcCCCCCCCCcchh
Q 003821 159 EAKEMGLVGPDSVWVIASDTITS--------------ALGIKTHFS--QDSSSYKIFEDQFRSYFRSEYPEDDVSEPGIY 222 (793)
Q Consensus 159 ~a~~~g~~~~~~~wi~~~~~~~~--------------~~g~~~~~~--~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 222 (793)
+++++|+..+ ++.+ ++... ......+.+ ..++..++|.++|+++|+ ..|+.+
T Consensus 215 ~~~~~g~~~~---~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~g--------~~p~~~ 282 (353)
T 4gnr_A 215 QARGMGIDKP---IVGG-DGFNGEEFVQQATAEKASNIYFISGFSTTVEVSAKAKAFLDAYRAKYN--------EEPSTF 282 (353)
T ss_dssp HHHHTTCCSC---EEEC-GGGCSHHHHHHHCTTTCCSEEEEESCCSSSSCCHHHHHHHHHHHHHHS--------SCCCHH
T ss_pred HHHHcCCCCc---EEEe-cccccchhhhhhhhhhhcCccccccccCCCCCCHHHHHHHHHHHHHhC--------CCCChh
Confidence 9999999765 4444 33322 111222222 234778899999999884 367889
Q ss_pred hHhHhHHHHHHHHHHhhccCCCCChhhHHHhhhhc-ccccceeeEEEeCCCcCCCCcEEEEEeecceeEEEEEe
Q 003821 223 ALRAYDSITVVAKSIDGMTSDNSSSKISLGYILSS-NFTGLSGPISFRGGKLLNSPILRIINMVGKKYKEIDFW 295 (793)
Q Consensus 223 a~~~YDAv~~la~Al~~~~~~~~~g~~l~~~l~~~-~f~G~tG~i~Fd~~g~~~~~~~~I~~~~~~~~~~VG~w 295 (793)
++++|||++++++|+++++ ++..+.++|+.+ +|+|++|+++||++|++ ...+.|+++++++++.+...
T Consensus 283 a~~~Yda~~~la~Ai~~a~----~~~~v~~aL~~~~~~~g~~G~i~f~~~g~~-~~~~~i~~v~~Gk~~~~~~v 351 (353)
T 4gnr_A 283 AALAYDSVHLVANAAKGAK----NSGEIKDNLAXTKDFEGVTGQTSFDADHNT-VKTAYMMTMNNGKVEAAEVV 351 (353)
T ss_dssp HHHHHHHHHHHHHHHTTCS----SHHHHHHHHHTCCCEEETTEEECCCTTSCC-CCCEEEEEEETTEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhcCC----CHHHHHHHHHhcCCCccCceeEEECCCcCC-cCCeEEEEEECCEEEEEEEe
Confidence 9999999999999999764 578999999987 59999999999999986 45788999999988876543
No 33
>3sg0_A Extracellular ligand-binding receptor; structural genomics, PSI-biology; HET: 173; 1.20A {Rhodopseudomonas palustris} PDB: 4dqd_A*
Probab=99.93 E-value=4.6e-26 Score=248.51 Aligned_cols=269 Identities=17% Similarity=0.204 Sum_probs=218.0
Q ss_pred CcccceEEEEcCCChhhHHHHHHhccCCCccEEeeeCCCCCCCCC--CCCCCeEEEecCChHHHHHHHHHHHhhcCceEE
Q 003821 2 IKEKEVKVIVGMETWGAATMVADIGSRAQVPVLSFAEPAIAPPLT--STRWPFLVRMANSSAEQITCTAALVGSYNWRKV 79 (793)
Q Consensus 2 i~~~~V~aiiGp~~s~~~~~va~i~~~~~iP~Is~~~~~~~~~l~--~~~~~~~~r~~p~~~~~~~ai~~ll~~~~w~~v 79 (793)
+.+++|.+||||.+|..+.++++++...+||+|++.++ ++.++ ...++++||+.|++..++.++++++.++||++|
T Consensus 85 ~~~~~v~~iig~~~s~~~~~~~~~~~~~~ip~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~i 162 (386)
T 3sg0_A 85 LSEEKVDVLIGSSLTPVSLPLIDIAAEAKTPLMTMAAA--AILVAPMDERRKWVYKVVPNDDIMAEAIGKYIAKTGAKKV 162 (386)
T ss_dssp HHTSCCSEEECCSSHHHHHHHHHHHHHTTCCEEECCCC--GGGTCSCCTTGGGEEECSCCHHHHHHHHHHHHHHTTCCEE
T ss_pred HhhcCceEEECCCCchhHHHHHHHHHhcCCeEEEecCC--CccccccCCCCCcEEecCCCcHHHHHHHHHHHHhcCCCEE
Confidence 44568999999999999999999999999999999887 66665 467899999999999999999999999999999
Q ss_pred EEEEEcCCCccccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcCCceEEEEeccChHHHHHHHHH
Q 003821 80 IIIYEDDATNADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRTESRVFIILQSSLAMGIHLFRE 159 (793)
Q Consensus 80 aii~~dd~~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivvl~~~~~~~~~~l~~ 159 (793)
++|+.+++|| ....+.+++.+++.|++++....++... .++...+.++++.++++|++ .+...++..++++
T Consensus 163 a~i~~~~~~~--~~~~~~~~~~l~~~g~~v~~~~~~~~~~------~d~~~~~~~~~~~~~dav~~-~~~~~~a~~~~~~ 233 (386)
T 3sg0_A 163 GYIGFSDAYG--EGYYKVLAAAAPKLGFELTTHEVYARSD------ASVTGQVLKIIATKPDAVFI-ASAGTPAVLPQKA 233 (386)
T ss_dssp EEEEESSHHH--HHHHHHHHHHHHHHTCEECCCEEECTTC------SCCHHHHHHHHHTCCSEEEE-ECCSGGGHHHHHH
T ss_pred EEEecCchHH--HHHHHHHHHHHHHcCCEEEEEEeeCCCC------CcHHHHHHHHHhcCCCEEEE-ecCcchHHHHHHH
Confidence 9999999999 9999999999999999988666676654 45777889999999999988 7887889999999
Q ss_pred HHHcCCCCCCeEEEEeCCcccc-------------ceeecc------cccCCc---hhhhHHHHHHHHhhhhcCCCCCCC
Q 003821 160 AKEMGLVGPDSVWVIASDTITS-------------ALGIKT------HFSQDS---SSYKIFEDQFRSYFRSEYPEDDVS 217 (793)
Q Consensus 160 a~~~g~~~~~~~wi~~~~~~~~-------------~~g~~~------~~~~~~---~~~~~f~~~~~~~~~~~~~~~~~~ 217 (793)
+++.|+..+ ++.+ ++..+ +..... ..+..+ +..++|.++|+++|+. .
T Consensus 234 ~~~~g~~~~---~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~-------~ 302 (386)
T 3sg0_A 234 LRERGFKGA---IYQT-HGVATEEFIKLGGKDVEGAIFAGEAFSGAEDMPADSPFRKVKARFVDAYKAANGG-------A 302 (386)
T ss_dssp HHHTTCCSE---EECC-GGGCSHHHHHHHGGGGTTCEEEECHHHHGGGSCTTCHHHHHHHHHHHHHHHHTTT-------C
T ss_pred HHHcCCCCc---EEec-cccCCHHHHHhhhhhcCCeEEecccccccccCCCCCcchHHHHHHHHHHHHHhCC-------C
Confidence 999999754 4444 44332 111111 112222 3578899999888743 2
Q ss_pred CcchhhHhHhHHHHHHHHHHhhccC-----CCCChhhHHHhhhhc-ccccceeeEEEeCCCcC--CCCcEEEEEeeccee
Q 003821 218 EPGIYALRAYDSITVVAKSIDGMTS-----DNSSSKISLGYILSS-NFTGLSGPISFRGGKLL--NSPILRIINMVGKKY 289 (793)
Q Consensus 218 ~~~~~a~~~YDAv~~la~Al~~~~~-----~~~~g~~l~~~l~~~-~f~G~tG~i~Fd~~g~~--~~~~~~I~~~~~~~~ 289 (793)
.|+.+++.+|||++++++|++++++ .+.++..+.++|+++ +|+|++|+++|++++++ .+..+.|++++++++
T Consensus 303 ~p~~~~~~~yda~~~~~~al~~a~~~~~~g~~~~~~~~~~al~~~~~~~g~~G~~~f~~~~~~g~~~~~~~i~~~~~G~~ 382 (386)
T 3sg0_A 303 APTIFGVHLWDSMTLVENAIPAALKAAKPGTPEFRAAIRDQIEKSKDLALNNGLSNMTPDNHNGYDERSAFLIEIRDGAF 382 (386)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHCCTTSHHHHHHHHHHHTTCCSEEETTEEECCCSSCSSCCCGGGCEEEEEETTEE
T ss_pred CCChhHHHHHHHHHHHHHHHHHhhhccCCCCcchHHHHHHHHHhccCccccceeEEECCCcCCCCCCCceEEEEEECCEE
Confidence 4678999999999999999999842 113478999999999 89999999999876554 235688999999887
Q ss_pred EEE
Q 003821 290 KEI 292 (793)
Q Consensus 290 ~~V 292 (793)
+.+
T Consensus 383 ~~~ 385 (386)
T 3sg0_A 383 RLK 385 (386)
T ss_dssp EEC
T ss_pred Eec
Confidence 754
No 34
>3snr_A Extracellular ligand-binding receptor; structural genomics, APC102214, PSI-biology, midwest center structural genomics, MCSG; HET: MSE TYR PHE; 1.49A {Rhodopseudomonas palustris} PDB: 3uk0_A* 3t23_A* 3ukj_A* 4eyo_A* 4eyq_A* 3tx6_A* 4f8j_A* 4fb4_A*
Probab=99.93 E-value=2.6e-25 Score=240.28 Aligned_cols=267 Identities=14% Similarity=0.129 Sum_probs=215.6
Q ss_pred CcccceEEEEcCCChhhHHHHHHhccCCCccEEeeeCCCCCCCCCCCCCCeEEEecCChHHHHHHHHHHHhhcCceEEEE
Q 003821 2 IKEKEVKVIVGMETWGAATMVADIGSRAQVPVLSFAEPAIAPPLTSTRWPFLVRMANSSAEQITCTAALVGSYNWRKVII 81 (793)
Q Consensus 2 i~~~~V~aiiGp~~s~~~~~va~i~~~~~iP~Is~~~~~~~~~l~~~~~~~~~r~~p~~~~~~~ai~~ll~~~~w~~vai 81 (793)
+.+++|.+||||.+|..+.++++++...+||+|++.++ + +....++++||+.|++..++.++++++.++||++|++
T Consensus 65 ~~~~~v~~iig~~~s~~~~~~~~~~~~~~ip~v~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~ 140 (362)
T 3snr_A 65 VTESKADVIMGSSVTPPSVAISNVANEAQIPHIALAPL---P-ITPERAKWSVVMPQPIPIMGKVLYEHMKKNNVKTVGY 140 (362)
T ss_dssp HHTSCCSEEEECSSHHHHHHHHHHHHHHTCCEEESSCC---C-CCTTTTTTEEECSCCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred HhccCceEEEcCCCcHHHHHHHHHHHHcCccEEEecCC---c-cccCCCCcEEecCCChHHHHHHHHHHHHhcCCCEEEE
Confidence 44568999999999999999999999999999998765 2 2355678999999999999999999999999999999
Q ss_pred EEEcCCCccccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcCCceEEEEeccChHHHHHHHHHHH
Q 003821 82 IYEDDATNADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRTESRVFIILQSSLAMGIHLFREAK 161 (793)
Q Consensus 82 i~~dd~~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivvl~~~~~~~~~~l~~a~ 161 (793)
|+.+++|| ....+.+++.+++.|++++....++... .++...+.++++.++++|++ .+...++..++++++
T Consensus 141 i~~~~~~~--~~~~~~~~~~l~~~g~~v~~~~~~~~~~------~~~~~~~~~l~~~~~dav~~-~~~~~~a~~~~~~~~ 211 (362)
T 3snr_A 141 IGYSDSYG--DLWFNDLKKQGEAMGLKIVGEERFARPD------TSVAGQALKLVAANPDAILV-GASGTAAALPQTTLR 211 (362)
T ss_dssp EEESSHHH--HHHHHHHHHHHHHTTCEEEEEEEECTTC------SCCHHHHHHHHHHCCSEEEE-ECCHHHHHHHHHHHH
T ss_pred EecCchHH--HHHHHHHHHHHHHcCCEEEEEeecCCCC------CCHHHHHHHHHhcCCCEEEE-ecCcchHHHHHHHHH
Confidence 99999899 9999999999999999988777777654 45677888888889999988 777899999999999
Q ss_pred HcCCCCCCeEEEEeCCcccc-------------ceeecc------cccCC---chhhhHHHHHHHHhhhhcCCCCCCCCc
Q 003821 162 EMGLVGPDSVWVIASDTITS-------------ALGIKT------HFSQD---SSSYKIFEDQFRSYFRSEYPEDDVSEP 219 (793)
Q Consensus 162 ~~g~~~~~~~wi~~~~~~~~-------------~~g~~~------~~~~~---~~~~~~f~~~~~~~~~~~~~~~~~~~~ 219 (793)
+.|+..+ ++.. .+..+ +..... .++.. ++..++|.++|+++|+. ..|
T Consensus 212 ~~g~~~p---~i~~-~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~-------~~p 280 (362)
T 3snr_A 212 ERGYNGL---IYQT-HGAASMDFIRIAGKSAEGVLMASGPVMDPEGQDDTALTKKPGMALVKVYEEKYGP-------SSR 280 (362)
T ss_dssp HTTCCSE---EEEC-GGGCSHHHHHHHGGGGTTCEEEECGGGCSTTSCTTCTTHHHHHHHHHHHHHHHCT-------TCC
T ss_pred HcCCCcc---EEec-cCcCcHHHHHHhHHHhCCCEEecccccccccCCCcCcccHHHHHHHHHHHHHhCC-------CCC
Confidence 9999765 3444 34332 111111 11211 24678999999988843 246
Q ss_pred chhhHhHhHHHHHHHHHHhhccC-----CCCChhhHHHhhhhc-ccccceeeEEEeCCCcC--CCCcEEEEEeecceeEE
Q 003821 220 GIYALRAYDSITVVAKSIDGMTS-----DNSSSKISLGYILSS-NFTGLSGPISFRGGKLL--NSPILRIINMVGKKYKE 291 (793)
Q Consensus 220 ~~~a~~~YDAv~~la~Al~~~~~-----~~~~g~~l~~~l~~~-~f~G~tG~i~Fd~~g~~--~~~~~~I~~~~~~~~~~ 291 (793)
+.+++.+|||++++++|++++++ .+.++..+.++|+++ +|+|++|+++|++++++ .+..+.|+++++++++.
T Consensus 281 ~~~~~~~yda~~~~~~al~~a~~~~~~g~~~~~~~~~~al~~~~~~~g~~G~~~f~~~~~~g~~~~~~~i~~~~~G~~~~ 360 (362)
T 3snr_A 281 SQFAGHSYDAFKVLERVVPVALKKAKPGTQEFREALREAFLTEKDIAASQGVYNFTETDRYGLDDRSRILLTVKNGKYVI 360 (362)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHCCTTSHHHHHHHHHHHHHCCCEECSSCEECCCSSCSSCCCGGGCEEEEEETTEEEE
T ss_pred CchhHhHHHHHHHHHHHHHHhhccccCCCcchHHHHHHHHHhcCCcccceeeEEeCCCCCCCCCCCCeEEEEEECCEEEE
Confidence 78999999999999999999853 113478999999999 89999999999977543 34568999999988775
Q ss_pred E
Q 003821 292 I 292 (793)
Q Consensus 292 V 292 (793)
|
T Consensus 361 v 361 (362)
T 3snr_A 361 V 361 (362)
T ss_dssp C
T ss_pred c
Confidence 4
No 35
>1pea_A Amidase operon; gene regulator, receptor, binding protein; 2.10A {Pseudomonas aeruginosa} SCOP: c.93.1.1 PDB: 1qo0_A 1qnl_A
Probab=99.92 E-value=2.2e-24 Score=235.07 Aligned_cols=272 Identities=12% Similarity=0.077 Sum_probs=215.4
Q ss_pred cccceEEEEcCCChhhHHHHHHhccCCCccEEeeeCCCCCCCCCCCCCCeEEEecCChHHHHHHHHHHHhhcCceEEEEE
Q 003821 3 KEKEVKVIVGMETWGAATMVADIGSRAQVPVLSFAEPAIAPPLTSTRWPFLVRMANSSAEQITCTAALVGSYNWRKVIII 82 (793)
Q Consensus 3 ~~~~V~aiiGp~~s~~~~~va~i~~~~~iP~Is~~~~~~~~~l~~~~~~~~~r~~p~~~~~~~ai~~ll~~~~w~~vaii 82 (793)
.+++|.+|||+.+|..+.++++++...++|+|++.+. +. ...++++||+.+++..++.++++++...+|++|++|
T Consensus 72 ~~~~v~~iig~~~s~~~~~~~~~~~~~~iP~v~~~~~--~~---~~~~~~~~~v~~~~~~~~~~~~~~l~~~g~~~ia~i 146 (385)
T 1pea_A 72 RNRGVRFLVGCYMSHTRKAVMPVVERADALLCYPTPY--EG---FEYSPNIVYGGPAPNQNSAPLAAYLIRHYGERVVFI 146 (385)
T ss_dssp HTTCCCEEEECCSHHHHHHHHHHHHHTTCEEEECSCC--CC---CCCCTTEEECSCCGGGTHHHHHHHHHTTTCSEEEEE
T ss_pred hhCCcEEEECCCchHHHHHHHHHHHhcCceEEECCcc--cC---ccCCCCEEEecCChHHhHHHHHHHHHHccCcEEEEE
Confidence 3578999999999988899999999999999998764 21 123578999999999999999999999999999999
Q ss_pred EEcCCCccccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcCCceEEEEeccChHHHHHHHHHHHH
Q 003821 83 YEDDATNADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRTESRVFIILQSSLAMGIHLFREAKE 162 (793)
Q Consensus 83 ~~dd~~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivvl~~~~~~~~~~l~~a~~ 162 (793)
+.++.+| ....+.+++.+++.|++++....++... ...++...+.++++.++++|++ .+....+..+++++++
T Consensus 147 ~~~~~~~--~~~~~~~~~~l~~~G~~v~~~~~~~~~~----~~~d~~~~~~~l~~~~pdaI~~-~~~~~~a~~~~~~~~~ 219 (385)
T 1pea_A 147 GSDYIYP--RESNHVMRHLYRQHGGTVLEEIYIPLYP----SDDDLQRAVERIYQARADVVFS-TVVGTGTAELYRAIAR 219 (385)
T ss_dssp EESSHHH--HHHHHHHHHHHHHTTCEEEEEEEECSSC----CHHHHHHHHHHHHHHTCSEEEE-ECCTHHHHHHHHHHHH
T ss_pred eCCChHH--HHHHHHHHHHHHHcCCEEEEEEeecCCC----CcchHHHHHHHHHHCCCCEEEE-ecccccHHHHHHHHHH
Confidence 9987788 8889999999999999987655554311 2367888999998889999888 6767889999999999
Q ss_pred cCCCCCCeEEEEeCCcccc------------ceeeccccc-CCchhhhHHHHHHHHhhhhcCCCCCCCCcchhhHhHhHH
Q 003821 163 MGLVGPDSVWVIASDTITS------------ALGIKTHFS-QDSSSYKIFEDQFRSYFRSEYPEDDVSEPGIYALRAYDS 229 (793)
Q Consensus 163 ~g~~~~~~~wi~~~~~~~~------------~~g~~~~~~-~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~a~~~YDA 229 (793)
.|+.++.+.++.. ++... ++...++.+ ..+|..++|.++|+++|+.. ..|+.+++.+|||
T Consensus 220 ~G~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~g~~------~~~~~~~~~~yda 292 (385)
T 1pea_A 220 RYGDGRRPPIASL-TTSEAEVAKMESDVAEGQVVVAPYFSSIDTPASRAFVQACHGFFPEN------ATITAWAEAAYWQ 292 (385)
T ss_dssp HHCSSCCCCEEES-SCCHHHHTTSCHHHHTTCEEEESCCTTCSSHHHHHHHHHHHTTSCTT------CCCCHHHHHHHHH
T ss_pred cCCCcCCceEEec-ccchHHHHhcCchhhCCeEEecccccccCCHHHHHHHHHHHHHhCCC------CCCChHHHHHHHH
Confidence 9997554444433 33211 222222322 23477888999988776431 2467799999999
Q ss_pred HHHHHHHHhhccCCCCChhhHHHhhhhcccccceeeEEEeCCCcCCCCcEEEEEe-ecceeEEEEEe
Q 003821 230 ITVVAKSIDGMTSDNSSSKISLGYILSSNFTGLSGPISFRGGKLLNSPILRIINM-VGKKYKEIDFW 295 (793)
Q Consensus 230 v~~la~Al~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~Fd~~g~~~~~~~~I~~~-~~~~~~~VG~w 295 (793)
++++++|+++++. .++..+.++|++++|+|++|+++||+++++....+.|.++ .++.++.|...
T Consensus 293 ~~~~~~Al~~ag~--~~~~~l~~al~~~~~~g~~G~i~f~~~~~~~~~~~~i~~~~~~g~~~~v~~~ 357 (385)
T 1pea_A 293 TLLLGRAAQAAGN--WRVEDVQRHLYDIDIDAPQGPVRVERQNNHSRLSSRIAEIDARGVFQVRWQS 357 (385)
T ss_dssp HHHHHHHHHHHTS--CCHHHHHHHHTTCCEEETTEEEEECTTTSCEEBCCEEEEECTTSCEEEEEEC
T ss_pred HHHHHHHHHHhCC--CCHHHHHHHHhhCcccCCCCCeEEcCCCCccccceEEEEEcCCCcEEEeecC
Confidence 9999999999987 6899999999999999999999999865545567888888 67778777544
No 36
>1yae_A Glutamate receptor, ionotropic kainate 2; kainate receptor, membrane protein; HET: NAG FUC DOQ; 3.11A {Rattus norvegicus} SCOP: c.94.1.1
Probab=99.90 E-value=5.7e-24 Score=224.50 Aligned_cols=244 Identities=19% Similarity=0.325 Sum_probs=176.9
Q ss_pred CCCCcEEEEecCCCCccceEEeccCC--CCCcceeeeeeHHHHHHHHHHCCCccceeE-------------E--------
Q 003821 344 TDAKPLIIGVPARTTFDKFVKLISSD--NPHKIIYDGYCIELFYKVLQVLKYDLPYEF-------------S-------- 400 (793)
Q Consensus 344 ~~~~~lrv~~~~~~~~~p~~~~~~~~--~~~~~~~~G~~~dll~~ia~~ln~~~~~~~-------------~-------- 400 (793)
.++++||||+... +||.+.+... .+++.++.||++||++++++++|+++++.. .
T Consensus 10 ~~~~~l~V~~~~~---~P~~~~~~~~~~~~~~g~~~G~~vdl~~~ia~~lg~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 86 (312)
T 1yae_A 10 LSNRSLIVTTILE---EPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDVNGQWNGMVRE 86 (312)
T ss_dssp TCSCEEEEEECCB---TTTBEECCCSSCCCGGGGEESHHHHHHHHHHHHHCCEEEEEECSSCCCCCBCTTTCCBCSHHHH
T ss_pred hcCceEEEEEecc---CCeeEEeccccccCCCceEEEEEHHHHHHHHHHcCCeEEEEecCCCccceeccCCCcchHHHHH
Confidence 3467899999754 5667665200 001228999999999999999999977763 2
Q ss_pred ----EEeEEEecEEEecccccceeecccccccceEEEEecCCC--CCCcEEecCCChhHHHHHHHHHHHHHHHHHhhhcc
Q 003821 401 ----DYDAAIGDITILVNRTRFVEFSQPYTESGLSMVVPAKAE--QSPWIFIKPFTWGMWIVTGAILIYTMSVVWFLEHR 474 (793)
Q Consensus 401 ----~~Di~~~~~~~t~~R~~~~dfs~p~~~~~~~~~v~~~~~--~~~~~~l~PF~~~vWl~i~~~~i~~~~~~~~~~~~ 474 (793)
++|++++++++|++|.+.++||.||+..+.+++++++.. .++|.|+.||+..
T Consensus 87 l~~g~~D~~~~~~~~t~eR~~~~~fs~py~~~~~~~~~~~~~~~~~~~~~~~~pf~~~---------------------- 144 (312)
T 1yae_A 87 LIDHKADLAVAPLAITYVREKVIDFSKPFMTLGISILYRKPNGTNPGVFSFLNGGSLV---------------------- 144 (312)
T ss_dssp HHTTSCSEECSSCBCCHHHHHHEEEEEEEEEECEEEEEEC----------------------------------------
T ss_pred HhCCCcCEEeecceechhhcceEEecceeeecceEEEEeCCccccccceeeecccccC----------------------
Confidence 999999999999999999999999999999999998763 4589999999910
Q ss_pred cCCCCCCCccccchhHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHhhhheeeeeccCCCCCCChHHhhh
Q 003821 475 WNPEFNGPWNIQIGTALWFTFSSLFFAHRERIYSNLTRLVVVVWLFVVLILNSSYTASLSSMLTVQRLKPNVTDIGWLKA 554 (793)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~s~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~ 554 (793)
|+ |++++...|++++||..
T Consensus 145 -------------------------------p~------------------------------tv~~~~~~i~~~~dL~g 163 (312)
T 1yae_A 145 -------------------------------PR------------------------------GSERMESPIDSADDLAK 163 (312)
T ss_dssp -----------------------------------------------------------------------CCSHHHHHT
T ss_pred -------------------------------Cc------------------------------ccccccCCCCCHHHHhh
Confidence 00 44556668999999984
Q ss_pred C-CCcccccCchHHHHHHHhhcCCC-----------CccccccCCHHHHHHHhhcCceEEEEechhhHHHHHhccCCceE
Q 003821 555 S-NLNVGFDGDSFVRNYLENVLGFK-----------PENILKVDHEYKYITDFESNRIAAAFLELSYERAFLSQHCKEYT 622 (793)
Q Consensus 555 ~-~~~~g~~~~~~~~~~l~~~~~~~-----------~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~c~~~~ 622 (793)
. ++++|+..++....++.+.. .. ..++..+.+.++++++|.+|+ ||++.+...+.|+++++|+ +.
T Consensus 164 ~~~~~vg~v~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~-Da~i~~~~~~~~~~~~~~~-l~ 240 (312)
T 1yae_A 164 QTKIEYGAVEDGATMTFFKKSK-ISTYDKMWAFMSSRRQSVLVKSNEEGIQRVLTSD-YAFLMESTTIEFVTQRNCN-LT 240 (312)
T ss_dssp CSSSEEECBTTSHHHHHHHHCC-BHHHHHHHHHHHHTHHHHCBSSHHHHHHHHHHSS-EEEEEEHHHHHHHHTTCTT-EE
T ss_pred ccCceEEEEeCChHHHHHHhcc-CchHHHHHHHHHhcCCCcccCCHHHHHHHHHcCC-cEEEeccHHHHHHHhcCCC-EE
Confidence 2 34899755444455555421 10 124567889999999999999 9999999999999988887 88
Q ss_pred EeCccccccceEEEecCCCcChHHHHHHHHhhhccCchHHHHHHHcCCCCCCCCC
Q 003821 623 ATIPTYRFGGFAFVFQKGSPLAADFSEAILKLSENGELRSLEEKWFAPSPECSGS 677 (793)
Q Consensus 623 ~~~~~~~~~~~~~~~~k~spl~~~in~~i~~l~e~G~~~~~~~~w~~~~~~c~~~ 677 (793)
+++..+...+++++++|++||++.||++|.+|.++|.++++.++|+... .|...
T Consensus 241 ~~~~~~~~~~~~~a~~k~~~l~~~in~~l~~l~~~G~~~~i~~kw~~~~-~c~~~ 294 (312)
T 1yae_A 241 QIGGLIDSKGYGVGTPMGSPYRDKITIAILQLQEEGKLHMMKEKWWRGN-GCPEE 294 (312)
T ss_dssp EESSCSSCEEEEEEEETTCSSHHHHHHHHHHHHHHTHHHHHHHHHHCCS-CC---
T ss_pred EecccccccceEEEEeCCCCcHHHHHHHHHHHHHcCCHHHHHhhhcCCC-CCCCC
Confidence 8887777888999999999999999999999999999999999999886 89866
No 37
>1pb7_A N-methyl-D-aspartate receptor subunit 1; ligand binding receptor, NR1, ligand binding protein; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1pbq_A* 1y1m_A 1y1z_A 1y20_A 2a5t_A* 1pb8_A 1pb9_A
Probab=99.89 E-value=5.5e-23 Score=214.47 Aligned_cols=215 Identities=22% Similarity=0.347 Sum_probs=174.2
Q ss_pred CcEEEEecCCCCccceEEeccCCCCCcceeeeeeHHHHHHHHHHCCCccceeE------------------E--------
Q 003821 347 KPLIIGVPARTTFDKFVKLISSDNPHKIIYDGYCIELFYKVLQVLKYDLPYEF------------------S-------- 400 (793)
Q Consensus 347 ~~lrv~~~~~~~~~p~~~~~~~~~~~~~~~~G~~~dll~~ia~~ln~~~~~~~------------------~-------- 400 (793)
++++||+. ..|+||.+.+.+ + ++.||++||+++|++++|+++++.. .
T Consensus 41 ~~l~vg~~--~~~~P~~~~~~~----g-~~~G~~vDll~~ia~~lg~~~~~~~~~d~~~g~~~~~~~~~~~~w~~~~~~l 113 (292)
T 1pb7_A 41 KVICTGPN--DTSPGSPRHTVP----Q-CCYGFCIDLLIKLARTMNFTYEVHLVADGKFGTQERVNNSNKKEWNGMMGEL 113 (292)
T ss_dssp CEEEEEEC----------CEEE----E-EEESHHHHHHHHHHHHHTCCEEEEECTTCCCCCEEECTTSSCEEECHHHHHH
T ss_pred ceeecccC--CCCCCccccccc----c-CcceeHHHHHHHHHHHcCceEEEEEecCCcccccccccccccCcHHHHHHHH
Confidence 57888874 457787776655 4 8999999999999999999966654 2
Q ss_pred ---EEeEEEecEEEecccccceeecccccccceEEEEecCCCCCCcEEecCCChhHHHHHHHHHHHHHHHHHhhhcccCC
Q 003821 401 ---DYDAAIGDITILVNRTRFVEFSQPYTESGLSMVVPAKAEQSPWIFIKPFTWGMWIVTGAILIYTMSVVWFLEHRWNP 477 (793)
Q Consensus 401 ---~~Di~~~~~~~t~~R~~~~dfs~p~~~~~~~~~v~~~~~~~~~~~l~PF~~~vWl~i~~~~i~~~~~~~~~~~~~~~ 477 (793)
++|++++++++|++|.+.++||.||+..+.+++++++.
T Consensus 114 ~~g~~D~~~~~~~~t~~R~~~~~fs~Py~~~~~~i~~~~~~--------------------------------------- 154 (292)
T 1pb7_A 114 LSGQADMIVAPLTINNERAQYIEFSKPFKYQGLTILVKKGT--------------------------------------- 154 (292)
T ss_dssp HHTSCSEECSSCBCCHHHHTTEEECSCSEEEEEEEEEETTC---------------------------------------
T ss_pred HcCCcCEEEeeeEecHHHhcceEechhhHhcCeEEEEECCc---------------------------------------
Confidence 99999999999999999999999999999999998765
Q ss_pred CCCCCccccchhHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHhhhheeeeeccCCCCCCChHHhhhCCC
Q 003821 478 EFNGPWNIQIGTALWFTFSSLFFAHRERIYSNLTRLVVVVWLFVVLILNSSYTASLSSMLTVQRLKPNVTDIGWLKASNL 557 (793)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~s~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~~~~ 557 (793)
++++++||...+.
T Consensus 155 -------------------------------------------------------------------~i~~~~dl~~~g~ 167 (292)
T 1pb7_A 155 -------------------------------------------------------------------RITGINDPRLRNP 167 (292)
T ss_dssp -------------------------------------------------------------------CCCSTTCHHHHSC
T ss_pred -------------------------------------------------------------------CCCCCcCccccCc
Confidence 3677888863332
Q ss_pred ---c-ccccCchHHHHHHHhhcCC----CCccccccCCHHHHHHHhhcCceEEEEechhhHHHHHhccCCceEEeCcccc
Q 003821 558 ---N-VGFDGDSFVRNYLENVLGF----KPENILKVDHEYKYITDFESNRIAAAFLELSYERAFLSQHCKEYTATIPTYR 629 (793)
Q Consensus 558 ---~-~g~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~c~~~~~~~~~~~ 629 (793)
. +|+..++....++.+.... +..++..+.+.++++++|.+|++||++.+...+.|+++++|+ +.+++..+.
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~vDa~i~d~~~~~~~~~~~~~-l~~~~~~~~ 246 (292)
T 1pb7_A 168 SDKFIYATVKQSSVDIYFRRQVELSTMYRHMEKHNYESAAEAIQAVRDNKLHAFIWDSAVLEFEASQKCD-LVTTGELFF 246 (292)
T ss_dssp BTTBCEECBTTSHHHHHHHTCGGGHHHHHHHTTTCBSSHHHHHHHHHTTSCSEEEEEHHHHHHHHHHCTT-EEECSSCSE
T ss_pred ccceEEEEEcCchHHHHhhhcccHHHHHHHHHhhcCCCHHHHHHHHHcCCceEEEEcHHHHHHHHhcCCC-EEEcCcccc
Confidence 3 4777777777776542111 123456788999999999999999999999999999999997 888888888
Q ss_pred ccceEEEecCCCcChHHHHHHHHhhhccCchHHHHHHHcCCCCCCCC
Q 003821 630 FGGFAFVFQKGSPLAADFSEAILKLSENGELRSLEEKWFAPSPECSG 676 (793)
Q Consensus 630 ~~~~~~~~~k~spl~~~in~~i~~l~e~G~~~~~~~~w~~~~~~c~~ 676 (793)
..+++++++|++||++.||++|.+|.++|.+++|.+||+... +|..
T Consensus 247 ~~~~~ia~~k~~~l~~~in~al~~l~~~G~~~~l~~kw~~~~-~c~~ 292 (292)
T 1pb7_A 247 RSGFGIGMRKDSPWKQNVSLSILKSHENGFMEDLDKTWVRYQ-ECDS 292 (292)
T ss_dssp EEEECCEEETTCSSHHHHHHHHHHHHHSSHHHHHHHHHTSSS-CCCC
T ss_pred CCceEEEEeCCCHHHHHHHHHHHHHHhCCCHHHHHHhhCCCC-CCCC
Confidence 889999999999999999999999999999999999999875 7863
No 38
>4h5g_A Amino acid ABC superfamily ATP binding cassette transporter, binding protein; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; HET: ARG; 1.78A {Streptococcus pneumoniae} PDB: 4h5f_A*
Probab=99.88 E-value=1.9e-22 Score=204.65 Aligned_cols=213 Identities=17% Similarity=0.215 Sum_probs=177.2
Q ss_pred CcEEEEecCCCCccceEEeccCCCCCcceeeeeeHHHHHHHHHHCCCccceeEE------------EEeEEEecEEEecc
Q 003821 347 KPLIIGVPARTTFDKFVKLISSDNPHKIIYDGYCIELFYKVLQVLKYDLPYEFS------------DYDAAIGDITILVN 414 (793)
Q Consensus 347 ~~lrv~~~~~~~~~p~~~~~~~~~~~~~~~~G~~~dll~~ia~~ln~~~~~~~~------------~~Di~~~~~~~t~~ 414 (793)
++|+||+ .+.|+||.+.+..+ ++.++.||++||++++++++|++++++.. ++|++++++++|++
T Consensus 12 g~L~Vg~--~~~~pP~~~~~~~d--~~g~~~G~~vdl~~~ia~~lg~~~~~~~~~~~~~~~~l~~g~~d~~~~~~~~t~e 87 (243)
T 4h5g_A 12 GKLVVAT--SPDYAPFEFQSLVD--GKNQVVGADIDMAQAIADELGVKLEILSMSFDNVLTSLQTGKADLAVAGISATDE 87 (243)
T ss_dssp TEEEEEE--CCCBTTTBEEEEET--TEEEEESHHHHHHHHHHHHHTSEEEEEECCGGGHHHHHHTTSCSEECSSCBCCHH
T ss_pred CEEEEEE--CCCCCCcEeeeccC--CCCcEEEeHHHHHHHHHHHhCCceEEecccHHHHHHHHHcCCCCcccccccCChh
Confidence 5799998 45688988753110 02389999999999999999999444433 89999999999999
Q ss_pred cccceeecccccccceEEEEecCCCCCCcEEecCCChhHHHHHHHHHHHHHHHHHhhhcccCCCCCCCccccchhHHHHH
Q 003821 415 RTRFVEFSQPYTESGLSMVVPAKAEQSPWIFIKPFTWGMWIVTGAILIYTMSVVWFLEHRWNPEFNGPWNIQIGTALWFT 494 (793)
Q Consensus 415 R~~~~dfs~p~~~~~~~~~v~~~~~~~~~~~l~PF~~~vWl~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (793)
|.+.++||.||+..+.++++++....
T Consensus 88 R~~~~~fs~py~~~~~~~~v~~~~~~------------------------------------------------------ 113 (243)
T 4h5g_A 88 RKEVFDFSIPYYENKISFLVHKADVE------------------------------------------------------ 113 (243)
T ss_dssp HHTTEEECSCSBCCCEEEEEEGGGTT------------------------------------------------------
T ss_pred HccEEEccCccccCcccccccccccc------------------------------------------------------
Confidence 99999999999999999999877643
Q ss_pred HHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHhhhheeeeeccCCCCCCChHHhhhCCCcccccCchHHHHHHHhh
Q 003821 495 FSSLFFAHRERIYSNLTRLVVVVWLFVVLILNSSYTASLSSMLTVQRLKPNVTDIGWLKASNLNVGFDGDSFVRNYLENV 574 (793)
Q Consensus 495 ~~~l~~~~~~~~~s~s~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~~~~~~g~~~~~~~~~~l~~~ 574 (793)
.+++++||. |.++|+..++....++.+.
T Consensus 114 --------------------------------------------------~~~~~~dl~--g~~i~v~~g~~~~~~l~~~ 141 (243)
T 4h5g_A 114 --------------------------------------------------KYKDLTSLE--SANIAAQKGTVPESMVKEQ 141 (243)
T ss_dssp --------------------------------------------------TCCSHHHHH--TSEEEEETTSHHHHHHHHH
T ss_pred --------------------------------------------------cccccccCC--CCEEEecCCcHHHHHHHHh
Confidence 588999998 8999999998888888776
Q ss_pred cCCCCccccccCCHHHHHHHhhcCceEEEEechhhHHHHHhccCC-ce-EEeCccccccceEEEecCCCc-ChHHHHHHH
Q 003821 575 LGFKPENILKVDHEYKYITDFESNRIAAAFLELSYERAFLSQHCK-EY-TATIPTYRFGGFAFVFQKGSP-LAADFSEAI 651 (793)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~c~-~~-~~~~~~~~~~~~~~~~~k~sp-l~~~in~~i 651 (793)
.+..++..+.+..+++++|.+|++|+++.+...+.+++.++.. .+ .+........+++++++|++| |++.||++|
T Consensus 142 --~~~~~i~~~~~~~~~~~~l~~GrvD~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~k~~~~L~~~~n~aL 219 (243)
T 4h5g_A 142 --LPKAQLTSLTNMGEAVNELQAGKIDAVHMDEPVALSYAAKNAGLAVATVSLKMKDGDANAVALRKNSDDLKEVVDKVI 219 (243)
T ss_dssp --CTTSEEEEESCHHHHHHHHHHTSCSEEEEEHHHHHHHHHHCTTEEECSCCCCCCSSCCBCCEEESSCHHHHHHHHHHH
T ss_pred --cccceeEEeCCHHHHHHHHHcCCccEEEecHHHHHHHHHHCCCCceeeccCCcccCceEEEEEeCCCHHHHHHHHHHH
Confidence 5667888999999999999999999999999888888777654 11 122334445678999999998 999999999
Q ss_pred HhhhccCchHHHHHHHcCCC
Q 003821 652 LKLSENGELRSLEEKWFAPS 671 (793)
Q Consensus 652 ~~l~e~G~~~~~~~~w~~~~ 671 (793)
.+|+++|.+++|.+||+...
T Consensus 220 ~~l~~dG~~~~i~~Kw~~~~ 239 (243)
T 4h5g_A 220 QKLKDEGTYQSYLEKAASLT 239 (243)
T ss_dssp HHHHHHTHHHHHHHHHTTSC
T ss_pred HHHHHCCHHHHHHHHhcCCC
Confidence 99999999999999998753
No 39
>2a5s_A N-methyl-D-aspartate receptor nmdar2A subunit, NMDA receptor nmdar2A; protein-ligand complex, metal transport,membrane protein; HET: GLU; 1.70A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 2a5t_B* 3oen_A* 3oel_A* 3oem_A* 3oek_A*
Probab=99.87 E-value=5.1e-23 Score=213.97 Aligned_cols=221 Identities=20% Similarity=0.337 Sum_probs=171.7
Q ss_pred CCCCCcEEEEecCCCCccceEEeccCCCCCcceeeeeeHHHHHHHHHHCCCccceeE---------E-------------
Q 003821 343 PTDAKPLIIGVPARTTFDKFVKLISSDNPHKIIYDGYCIELFYKVLQVLKYDLPYEF---------S------------- 400 (793)
Q Consensus 343 ~~~~~~lrv~~~~~~~~~p~~~~~~~~~~~~~~~~G~~~dll~~ia~~ln~~~~~~~---------~------------- 400 (793)
+.+|++||||++..++|++|.....+ .++..++.||++||++++++++|+++++.. .
T Consensus 25 ~~~~~~lrvgv~~~~~~~~~~~~~~~-~~~~~~~~G~~~dl~~~i~~~lg~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~ 103 (284)
T 2a5s_A 25 PLTETCVRNTVPCRKFVKINNSTNEG-MNVKKCCKGFCIDILKKLSRTVKFTYDLYLVTNGKHGKKVNNVWNGMIGEVVY 103 (284)
T ss_dssp CC-CCCCTTCEEEEEEEESSSSSSCE-EEEEEEEESHHHHHHHHHHHHHTCCEEEEECCSSSSCCEETTEECHHHHHHHT
T ss_pred CCCCccccccccccccccccccccCC-CCCcceeeEEhHHHHHHHHHHCCCCEEEEEccCCccCcccCCCHHHHHHHHhc
Confidence 34678889998887777666432211 011227899999999999999999944421 2
Q ss_pred -EEeEEEecEEEecccccceeecccccccceEEEEecCCCCCCcEEecCCChhHHHHHHHHHHHHHHHHHhhhcccCCCC
Q 003821 401 -DYDAAIGDITILVNRTRFVEFSQPYTESGLSMVVPAKAEQSPWIFIKPFTWGMWIVTGAILIYTMSVVWFLEHRWNPEF 479 (793)
Q Consensus 401 -~~Di~~~~~~~t~~R~~~~dfs~p~~~~~~~~~v~~~~~~~~~~~l~PF~~~vWl~i~~~~i~~~~~~~~~~~~~~~~~ 479 (793)
++|++++++++|++|.+.++||.||+.++.+++++++..
T Consensus 104 g~~D~~~~~~~~t~~R~~~~~fs~p~~~~~~~~~~~~~~~---------------------------------------- 143 (284)
T 2a5s_A 104 QRAVMAVGSLTINEERSEVVDFSVPFVETGISVMVSRGTQ---------------------------------------- 143 (284)
T ss_dssp TSCSEECSSCBCCHHHHTTEEECCCCEEECEEEEEETTCC----------------------------------------
T ss_pred CCcCEEEEEEEEeccccceEEeccCchhcCEEEEEECCcc----------------------------------------
Confidence 899999999999999999999999999999999997653
Q ss_pred CCCccccchhHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHhhhheeeeeccCCCCCCChHHhhh-----
Q 003821 480 NGPWNIQIGTALWFTFSSLFFAHRERIYSNLTRLVVVVWLFVVLILNSSYTASLSSMLTVQRLKPNVTDIGWLKA----- 554 (793)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~s~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~----- 554 (793)
+++++||..
T Consensus 144 ------------------------------------------------------------------~~~~~dl~~~~~~~ 157 (284)
T 2a5s_A 144 ------------------------------------------------------------------VTGLSDKKFQRPHD 157 (284)
T ss_dssp ------------------------------------------------------------------CCSTTSHHHHSGGG
T ss_pred ------------------------------------------------------------------cccccccccCChhH
Confidence 455555542
Q ss_pred --CCCcccccCchHHHHHHHhhcCCCCc--ccccc--CCHHHHHHHhhcCceEEEEechhhHHHHHhcc--CCceEEeC-
Q 003821 555 --SNLNVGFDGDSFVRNYLENVLGFKPE--NILKV--DHEYKYITDFESNRIAAAFLELSYERAFLSQH--CKEYTATI- 625 (793)
Q Consensus 555 --~~~~~g~~~~~~~~~~l~~~~~~~~~--~~~~~--~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~--c~~~~~~~- 625 (793)
.+.++|+..++....++.+. ++.. .+..+ .+.++++++|.+|++||++.+...+.++++++ |+ +..++
T Consensus 158 l~~~~~vg~v~~~s~~~~l~~~--~~~~~~~i~~~~~~~~~~~l~~l~~G~vDa~i~d~~~~~~~~~~~~~~~-l~~~~~ 234 (284)
T 2a5s_A 158 YSPPFRFGTVPNGSTERNIRNN--YPYMHQYMTRFNQRGVEDALVSLKTGKLDAFIYDAAVLNYKAGRDEGCK-LVTIGS 234 (284)
T ss_dssp SSSCCCEECCTTSHHHHHHHTT--CHHHHHHHGGGCCSSHHHHHHHHHTTSCSEEEEEHHHHHHHHHTCTTSC-EEEEEC
T ss_pred cCCCceEEEEeCCchHHHHHHH--HHHHHHHHHhccCCCHHHHHHHHHcCCeeEEEEchHHHHHHHhcCCCCC-EEEeCC
Confidence 26789976433344455442 2221 34455 78899999999999999999999999988875 66 66653
Q ss_pred -ccccccceEEEecCCCcChHHHHHHHHhhhccCchHHHHHHHcCCCCCCC
Q 003821 626 -PTYRFGGFAFVFQKGSPLAADFSEAILKLSENGELRSLEEKWFAPSPECS 675 (793)
Q Consensus 626 -~~~~~~~~~~~~~k~spl~~~in~~i~~l~e~G~~~~~~~~w~~~~~~c~ 675 (793)
..+...+++++++|+++|++.||++|.++.++|.+++|.++|+.. .|.
T Consensus 235 ~~~~~~~~~~~a~~k~~~l~~~ln~~l~~l~~~g~~~~i~~kw~~~--~c~ 283 (284)
T 2a5s_A 235 GYIFATTGYGIALQKGSPWKRQIDLALLQFVGDGEMEELETLWLTG--ICH 283 (284)
T ss_dssp CCGGGCEEECCEEETTCTTHHHHHHHHHHHHHHTHHHHHHHHHTCC--CCC
T ss_pred ccccccCceEEEecCCCHHHHHHHHHHHHHHhCChHHHHHHHhhhc--cCC
Confidence 566778899999999999999999999999999999999999986 675
No 40
>3g3k_A Glutamate receptor, ionotropic kainate 2; membrane protein, cell junction, cell membrane, glycoprotein, ION transport, ionic channel, membrane; HET: GLU IPA; 1.24A {Rattus norvegicus} PDB: 3g3j_A* 3g3i_A* 2i0b_A* 3g3h_A* 3g3g_A* 3g3f_A* 1s7y_A* 1s9t_A* 1sd3_A* 1tt1_A* 1s50_A* 2xxr_A* 2xxt_A* 2xxx_A* 2xxw_A* 2xxy_A* 2xxu_A* 2xxv_A* 3qxm_A* 2i0c_A* ...
Probab=99.87 E-value=6.4e-22 Score=202.80 Aligned_cols=218 Identities=21% Similarity=0.336 Sum_probs=176.7
Q ss_pred CCcEEEEecCCCCccceEEeccCC--CCCcceeeeeeHHHHHHHHHHCCCccceeE--------------E---------
Q 003821 346 AKPLIIGVPARTTFDKFVKLISSD--NPHKIIYDGYCIELFYKVLQVLKYDLPYEF--------------S--------- 400 (793)
Q Consensus 346 ~~~lrv~~~~~~~~~p~~~~~~~~--~~~~~~~~G~~~dll~~ia~~ln~~~~~~~--------------~--------- 400 (793)
+++|||++... +||.+.+.+. .+++.++.||++||++++++++|+++++++ .
T Consensus 3 ~~~l~v~~~~~---~P~~~~~~~~~~~~~~g~~~G~~vdl~~~ia~~lg~~~~~~~~p~~~~g~~~~~~~~~~~~~~~l~ 79 (259)
T 3g3k_A 3 NRSLIVTTILE---EPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTHLGFTYEIRLVEDGKYGAQDDVNGQWNGMVRELI 79 (259)
T ss_dssp CCCEEEEECCB---TTTBEECCCSSCCCGGGGEESHHHHHHHHHHHHHTCCEEEEECTTCCCCCBCTTTCCBCHHHHHHH
T ss_pred CcEEEEEEecC---CCeEEEeecccccCCCceeeeEHHHHHHHHHHHcCCeEEEEECCCCCcCcccCCCCcchHHHHHHh
Confidence 57899999765 4666665431 112238999999999999999999977775 1
Q ss_pred --EEeEEEecEEEecccccceeecccccccceEEEEecCCCCCCcEEecCCChhHHHHHHHHHHHHHHHHHhhhcccCCC
Q 003821 401 --DYDAAIGDITILVNRTRFVEFSQPYTESGLSMVVPAKAEQSPWIFIKPFTWGMWIVTGAILIYTMSVVWFLEHRWNPE 478 (793)
Q Consensus 401 --~~Di~~~~~~~t~~R~~~~dfs~p~~~~~~~~~v~~~~~~~~~~~l~PF~~~vWl~i~~~~i~~~~~~~~~~~~~~~~ 478 (793)
++|++++++++|++|.+.++||.||+..+.+++++++.
T Consensus 80 ~g~~D~~~~~~~~t~eR~~~~~fs~py~~~~~~~~~~~~~---------------------------------------- 119 (259)
T 3g3k_A 80 DHKADLAVAPLAITYVREEVIDFSKPFMTLGISILYRKGT---------------------------------------- 119 (259)
T ss_dssp TTSCSEECSSCBCCHHHHTTEEECSCSEEECEEEEEESSS----------------------------------------
T ss_pred cCcccEEEeeeEecccccceEeeeeeeeeCCEEEEEeCCc----------------------------------------
Confidence 99999999999999999999999999999999998865
Q ss_pred CCCCccccchhHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHhhhheeeeeccCCCCCCChHHhhhC-CC
Q 003821 479 FNGPWNIQIGTALWFTFSSLFFAHRERIYSNLTRLVVVVWLFVVLILNSSYTASLSSMLTVQRLKPNVTDIGWLKAS-NL 557 (793)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~s~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~~-~~ 557 (793)
+|++++||... ++
T Consensus 120 ------------------------------------------------------------------~i~~~~dL~g~~~~ 133 (259)
T 3g3k_A 120 ------------------------------------------------------------------PIDSADDLAKQTKI 133 (259)
T ss_dssp ------------------------------------------------------------------SCCSHHHHHTCSSS
T ss_pred ------------------------------------------------------------------cccCHHHhccCCCc
Confidence 47899999732 44
Q ss_pred cccccCchHHHHHHHhhcCC----------CCccccccCCHHHHHHHhhcCceEEEEechhhHHHHHhccCCceEEeCcc
Q 003821 558 NVGFDGDSFVRNYLENVLGF----------KPENILKVDHEYKYITDFESNRIAAAFLELSYERAFLSQHCKEYTATIPT 627 (793)
Q Consensus 558 ~~g~~~~~~~~~~l~~~~~~----------~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~c~~~~~~~~~ 627 (793)
++|+..++....++.+.... ....+..+.+.++++++|.+|+ |+++.+...+.|+.++.|+ +.+++..
T Consensus 134 ~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~-da~i~~~~~~~~~~~~~~~-l~~~~~~ 211 (259)
T 3g3k_A 134 EYGAVEDGATMTFFKRSKISTYDKMWAFMSSRRQSVLVKSNEEGIQRVLTSD-YAFLMESTTIEFVTQRNCN-LTQIGGL 211 (259)
T ss_dssp EEEEETTSHHHHHHHHCCSHHHHHHHHHHHHTHHHHEESSHHHHHHHHHHSS-EEEEEEHHHHHHHHHHCTT-EEEESSC
T ss_pred eEEEecCcHHHHHHhhccchhHHHHHHHHHhcCCCcccCCHHHHHHHHHhCC-eEEEechHHHHHHhcCCce-EEEeccc
Confidence 58876666666665543110 0113356789999999999999 9999999999999988887 7888888
Q ss_pred ccccceEEEecCCCcChHHHHHHHHhhhccCchHHHHHHHcCCCCCCC
Q 003821 628 YRFGGFAFVFQKGSPLAADFSEAILKLSENGELRSLEEKWFAPSPECS 675 (793)
Q Consensus 628 ~~~~~~~~~~~k~spl~~~in~~i~~l~e~G~~~~~~~~w~~~~~~c~ 675 (793)
+...+++++++|++||++.||++|.+|.++|.+++|.++|+... +|+
T Consensus 212 ~~~~~~~~a~~k~~~l~~~in~~l~~l~~~G~~~~i~~kw~~~~-~c~ 258 (259)
T 3g3k_A 212 IDSKGYGVGTPMGSPYRDKITLAILKLQEQGKLHMMKEKWWRGN-GCP 258 (259)
T ss_dssp SSCEEECCEEETTCTHHHHHHHHHHHHHHTC-CHHHHHHHHCC---CC
T ss_pred ceeeeEEEEECCCCccHHHHHHHHHHHHhcChHHHHHHhhcCCC-CCC
Confidence 88889999999999999999999999999999999999999965 686
No 41
>2rc8_A Glutamate [NMDA] receptor subunit 3A; membrane protein, cell junction, glycoprotein, ION transport channel, magnesium; 1.45A {Rattus norvegicus} PDB: 2rc7_A 2rc9_A 2rca_A 2rcb_A
Probab=99.87 E-value=6.3e-22 Score=206.82 Aligned_cols=192 Identities=19% Similarity=0.395 Sum_probs=161.8
Q ss_pred eeeeeeHHHHHHHHHHCCCccceeE---------E--------------EEeEEEecEEEecccccceeecccccccceE
Q 003821 375 IYDGYCIELFYKVLQVLKYDLPYEF---------S--------------DYDAAIGDITILVNRTRFVEFSQPYTESGLS 431 (793)
Q Consensus 375 ~~~G~~~dll~~ia~~ln~~~~~~~---------~--------------~~Di~~~~~~~t~~R~~~~dfs~p~~~~~~~ 431 (793)
++.||++||+++|++++|+++++.. . ++|++++++++|++|.+.++||.||+..+.+
T Consensus 67 ~~~G~~vdll~~ia~~lg~~~~~~~~~~~~~g~~~~~~w~~~~~~l~~g~~D~~~~~~~~t~eR~~~~~fs~P~~~~~~~ 146 (294)
T 2rc8_A 67 CCYGYCIDLLEQLAEDMNFDFDLYIVGDGKYGAWKNGHWTGLVGDLLSGTANMAVTSFSINTARSQVIDFTSPFFSTSLG 146 (294)
T ss_dssp EEESHHHHHHHHHHHHHTEEEEEEECTTCCCCCEETTEECHHHHHHHHTSCSEECSSCBCCHHHHTTSEECSCSEEEEEE
T ss_pred CceEEhHHHHHHHHHHcCCcEEEEECCCCcccccCCCCHHHHHHHHHCCCcCEEEeccccCHhHhceEEEccchHhcceE
Confidence 3789999999999999999944321 2 9999999999999999999999999999999
Q ss_pred EEEecCCCCCCcEEecCCChhHHHHHHHHHHHHHHHHHhhhcccCCCCCCCccccchhHHHHHHHHHhhccccccccchh
Q 003821 432 MVVPAKAEQSPWIFIKPFTWGMWIVTGAILIYTMSVVWFLEHRWNPEFNGPWNIQIGTALWFTFSSLFFAHRERIYSNLT 511 (793)
Q Consensus 432 ~~v~~~~~~~~~~~l~PF~~~vWl~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~s~ 511 (793)
++++++..
T Consensus 147 i~~~~~~~------------------------------------------------------------------------ 154 (294)
T 2rc8_A 147 ILVRTRGT------------------------------------------------------------------------ 154 (294)
T ss_dssp EEEETTSC------------------------------------------------------------------------
T ss_pred EEEECCCC------------------------------------------------------------------------
Confidence 99998764
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhheeeeeccCCCCCCChHHhh----hCCCcccccCchHHHHHHHhhcCCCC----cccc
Q 003821 512 RLVVVVWLFVVLILNSSYTASLSSMLTVQRLKPNVTDIGWLK----ASNLNVGFDGDSFVRNYLENVLGFKP----ENIL 583 (793)
Q Consensus 512 R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~----~~~~~~g~~~~~~~~~~l~~~~~~~~----~~~~ 583 (793)
.|++++||. ..+.++|+..++....++.+. ++. .+..
T Consensus 155 ---------------------------------~i~~~~dL~~~~~~~g~~vg~~~gs~~~~~l~~~--~~~~~~~i~~~ 199 (294)
T 2rc8_A 155 ---------------------------------ELSGIHDPKLHHPSQGFRFGTVRESSAEDYVRQS--FPEMHEYMRRY 199 (294)
T ss_dssp ---------------------------------CCCSTTCHHHHSCCTTCCEECBTTSHHHHHHHHH--CHHHHHHHGGG
T ss_pred ---------------------------------CcCChhhhhhcCcccCeEEEEEcCChHHHHHHHH--HHHHHHHHHHh
Confidence 478888886 358999999888888887765 221 1123
Q ss_pred ccCCHHHHHHHhhc--CceEEEEechhhHHHHHhc--cCCceEEeCccccccceEEEecCCCcChHHHHHHHHhhhccCc
Q 003821 584 KVDHEYKYITDFES--NRIAAAFLELSYERAFLSQ--HCKEYTATIPTYRFGGFAFVFQKGSPLAADFSEAILKLSENGE 659 (793)
Q Consensus 584 ~~~~~~~~~~~l~~--g~~~a~~~~~~~~~~~~~~--~c~~~~~~~~~~~~~~~~~~~~k~spl~~~in~~i~~l~e~G~ 659 (793)
.+.+.++++++|.+ |++||++.+...+.|++++ .|+ +.+++..+...+++++++|++|+++.||++|.+|.++|.
T Consensus 200 ~~~~~~~~~~~l~~~~GrvDa~i~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~ia~~k~~~l~~~in~al~~l~~~G~ 278 (294)
T 2rc8_A 200 NVPATPDGVQYLKNDPEKLDAFIMDKALLDYEVSIDADCK-LLTVGKPFAIEGYGIGLPPNSPLTSNISELISQYKSHGF 278 (294)
T ss_dssp CBSSHHHHHHHHHSSSCCCSEEEEEHHHHHHHHHTCSSSC-EEECSCCEEEEEECCEECTTCTHHHHHHHHHHHHHHTTH
T ss_pred cCCCHHHHHHHHHhccCceeEEEecHHHHHHHHhhCCCCC-EEEcCCcccccceEEEecCCCHHHHHHHHHHHHHHhCCC
Confidence 56889999999999 9999999999999998876 465 888887788889999999999999999999999999999
Q ss_pred hHHHHHHHcCCCCCCC
Q 003821 660 LRSLEEKWFAPSPECS 675 (793)
Q Consensus 660 ~~~~~~~w~~~~~~c~ 675 (793)
+++|.++|+... .|+
T Consensus 279 ~~~l~~kw~~~~-~c~ 293 (294)
T 2rc8_A 279 MDVLHDKWYKVV-PCG 293 (294)
T ss_dssp HHHHHHHHCCC-----
T ss_pred HHHHHHhhcCCC-CCC
Confidence 999999999865 786
No 42
>4gvo_A LMO2349 protein; structural genomics, IDP05245, L-cystine, ABC transporter, periplasmic binding protein, niaid; HET: HIS; 1.45A {Listeria monocytogenes} PDB: 2o1m_A
Probab=99.86 E-value=4.6e-22 Score=201.78 Aligned_cols=211 Identities=15% Similarity=0.145 Sum_probs=171.0
Q ss_pred CCcEEEEecCCCCccceEEeccCCCCCcceeeeeeHHHHHHHHHHC-CCccceeEE------------EEeEEEecEEEe
Q 003821 346 AKPLIIGVPARTTFDKFVKLISSDNPHKIIYDGYCIELFYKVLQVL-KYDLPYEFS------------DYDAAIGDITIL 412 (793)
Q Consensus 346 ~~~lrv~~~~~~~~~p~~~~~~~~~~~~~~~~G~~~dll~~ia~~l-n~~~~~~~~------------~~Di~~~~~~~t 412 (793)
.++|+||+ .+.|+||.+.+++ + ++.||++||+++|+++| |++++++.. ++|++++++++|
T Consensus 8 ~~tl~vg~--~~~~pP~~~~d~~----G-~~~G~~vdl~~~ia~~l~g~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~t 80 (243)
T 4gvo_A 8 VQTITVGT--GTQFPNVCFLDEN----G-KLTGYDVELVKEIDKRLPGYKFKFKTMDFSNLLVSLGAGKVDIVAHQMEKS 80 (243)
T ss_dssp CEEEEEEE--CSEETTTEEECTT----S-CEESHHHHHHHHHHHTCTTEEEEEEECCGGGHHHHHHTTSCSEECSCCBCC
T ss_pred CCeEEEEE--CCCCCCeEEECCC----C-cEEEhHHHHHHHHHHhccCCeEEEEECCHHHHHHHHHCCCCCEecccCCCC
Confidence 46799998 4568999998766 4 89999999999999998 899544444 999999999999
Q ss_pred cccccceeecccccccceEEEE-ecCCCCCCcEEecCCChhHHHHHHHHHHHHHHHHHhhhcccCCCCCCCccccchhHH
Q 003821 413 VNRTRFVEFSQPYTESGLSMVV-PAKAEQSPWIFIKPFTWGMWIVTGAILIYTMSVVWFLEHRWNPEFNGPWNIQIGTAL 491 (793)
Q Consensus 413 ~~R~~~~dfs~p~~~~~~~~~v-~~~~~~~~~~~l~PF~~~vWl~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (793)
++|.+.++||.||+.....+++ +....
T Consensus 81 ~eR~~~~~fs~p~~~~~~~~~~~~~~~~---------------------------------------------------- 108 (243)
T 4gvo_A 81 KEREKKFLFNDVAYNNFPLQLTVLDSNN---------------------------------------------------- 108 (243)
T ss_dssp HHHHHHSEECSSCCEECCEEEEEETTCC----------------------------------------------------
T ss_pred HHHhhhhhhhhhhcccccceEEEecccc----------------------------------------------------
Confidence 9999999999998776555444 44333
Q ss_pred HHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHhhhheeeeeccCCCCCCChHHhhhCCCcccccCchHHHHHH
Q 003821 492 WFTFSSLFFAHRERIYSNLTRLVVVVWLFVVLILNSSYTASLSSMLTVQRLKPNVTDIGWLKASNLNVGFDGDSFVRNYL 571 (793)
Q Consensus 492 ~~~~~~l~~~~~~~~~s~s~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~~~~~~g~~~~~~~~~~l 571 (793)
.|++++||. |.++|+..++....++
T Consensus 109 -----------------------------------------------------~~~~~~dL~--g~~v~v~~gs~~~~~~ 133 (243)
T 4gvo_A 109 -----------------------------------------------------SINSTKDLA--GKRVITSATSNGALVL 133 (243)
T ss_dssp -----------------------------------------------------SCSSGGGGT--TCEEEECTTCHHHHHH
T ss_pred -----------------------------------------------------ccCchHHhc--CCeEEEecCchHHHHH
Confidence 589999998 8999998877655555
Q ss_pred Hhhc---CCCCccccccCCHHHHHHHhhcCceEEEEechhhHHHHHhccCCceEEeCccccccceEEEecCCCc-ChHHH
Q 003821 572 ENVL---GFKPENILKVDHEYKYITDFESNRIAAAFLELSYERAFLSQHCKEYTATIPTYRFGGFAFVFQKGSP-LAADF 647 (793)
Q Consensus 572 ~~~~---~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~k~sp-l~~~i 647 (793)
.... .........+.+..+.+.+|.+|++|+++.+...+.+..++......++++.+...+++++++|++| |++.|
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~GrvDa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~i 213 (243)
T 4gvo_A 134 KKINEEQGNNFEIAYEGQGSNDTANQLKTGRADATISTPFAVDFQNKTSAIKEKVVGDVLSNAKVYFMLGKDETKLSKKV 213 (243)
T ss_dssp HHHHHHTTSCSEEEECCSGGGSHHHHHHHTSCSBEEECHHHHHHHHHTCSSCEEEEEEEEECCEECCEECTTCHHHHHHH
T ss_pred HHHHHhccccceeccccCChHHHHHHHHcCCccEEEccHHHHHHHHhhCCCceEEeccCCCCCcEEEEEeCCCHHHHHHH
Confidence 4321 1111222356778899999999999999999988888887765446777777778889999999988 99999
Q ss_pred HHHHHhhhccCchHHHHHHHcCC
Q 003821 648 SEAILKLSENGELRSLEEKWFAP 670 (793)
Q Consensus 648 n~~i~~l~e~G~~~~~~~~w~~~ 670 (793)
|++|.+|.++|.+++|.+||+..
T Consensus 214 n~~l~~l~~~G~~~~i~~kw~g~ 236 (243)
T 4gvo_A 214 DEALQSIIDDGTLKKLSEKWLGA 236 (243)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHCG
T ss_pred HHHHHHHHhCcHHHHHHHHHCCC
Confidence 99999999999999999999974
No 43
>2h4a_A YRAM (HI1655); perplasmic binding protein, lipoprotein; 1.35A {Haemophilus influenzae} PDB: 3ckm_A
Probab=99.86 E-value=1.9e-21 Score=204.26 Aligned_cols=246 Identities=8% Similarity=-0.022 Sum_probs=187.0
Q ss_pred ccceEEEEcCCChhhHHHHHHhc-cCCCccEEeeeCCCCCCCCCCCCCCeEEEecCChHHHHHHHHHHHhhcCceEEEEE
Q 003821 4 EKEVKVIVGMETWGAATMVADIG-SRAQVPVLSFAEPAIAPPLTSTRWPFLVRMANSSAEQITCTAALVGSYNWRKVIII 82 (793)
Q Consensus 4 ~~~V~aiiGp~~s~~~~~va~i~-~~~~iP~Is~~~~~~~~~l~~~~~~~~~r~~p~~~~~~~ai~~ll~~~~w~~vaii 82 (793)
++||.+||||.+|+.+.++++++ ...+||+|+++++ + ......+.|+||+.|. .+++++++++...|.+++++|
T Consensus 54 ~~~v~~IiGp~~s~~~~a~~~~~~~~~~vp~i~~~~~--~-~~~~~~~~~~f~~~~~--~~~~~~a~~a~~~g~k~vail 128 (325)
T 2h4a_A 54 QAGIKTLVGPLLKQNLDVILADPAQIQGMDVLALNAT--P-NSRAIPQLCYYGLSPE--DEAESAANKMWNDGVRNPLVA 128 (325)
T ss_dssp HTTCCEEECCCSHHHHHHHHHCGGGGTTCEEEESCCC--S-SCCCCTTEEECCCCHH--HHHHHHHHHHHHTTCCSCEEE
T ss_pred HCCCCEEEeeCCHHHHHHHHhhhhccCCCcEEECCCC--c-cccCCCCeEEEECCHH--HHHHHHHHHHHHcCCCeEEEE
Confidence 57899999999999999999999 7899999998776 3 2333345677776554 578999999988899999999
Q ss_pred EEcCCCccccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcCCceEEEEeccChHHHHHHHHHHHH
Q 003821 83 YEDDATNADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRTESRVFIILQSSLAMGIHLFREAKE 162 (793)
Q Consensus 83 ~~dd~~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivvl~~~~~~~~~~l~~a~~ 162 (793)
+.+++|| .+..+.|++.+++.|++++....+.+. .|+..+|+++ ..++|+|++ .++..++..+.++++.
T Consensus 129 ~~~~~yG--~~~~~~F~~~~~~~Gg~vv~~~~y~~~-------~d~~~~l~~i-~~~pDaV~~-~~~~~~~~~i~~~~~~ 197 (325)
T 2h4a_A 129 MPQNDLG--QRVGNAFNVRWQQLAGTDANIRYYNLP-------ADVTYFVQEN-NSNTTALYA-VASPTELAEXKGYLTN 197 (325)
T ss_dssp EESSHHH--HHHHHHHHHHHHHHHSSCCEEEEESST-------THHHHHHHHS-TTCCCEEEE-CCCHHHHHHHHHHHTT
T ss_pred EcCCcHH--HHHHHHHHHHHHHcCCCcceeEecCCH-------HHHHHHHHhc-CCCCCEEEE-eCCHHHHhhhhhhHhh
Confidence 9999999 999999999999999999988887752 4789999998 478999999 8899999888888887
Q ss_pred cCCCCCCeEEEEeCCccc--c----------ceee----cccc-cCCchhhhHHHHHHHHhhhhcCCCCCCCCcchhhHh
Q 003821 163 MGLVGPDSVWVIASDTIT--S----------ALGI----KTHF-SQDSSSYKIFEDQFRSYFRSEYPEDDVSEPGIYALR 225 (793)
Q Consensus 163 ~g~~~~~~~wi~~~~~~~--~----------~~g~----~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~a~~ 225 (793)
.|...+ .+.+ ++.. + .-|+ .++. ....+.+++|.+.|+..+ .|....++
T Consensus 198 ~g~~~p---l~~~-~~~~~~s~~~~~~~~~~~~Gv~f~~~p~~~~~~~~~~~~f~~~~~~~~----------~~~rl~Al 263 (325)
T 2h4a_A 198 IVPNLA---IYAS-SRASASATNTNTDFIAQMNGVQFSDIPFFKDTNSPQYQKLAKSTGGEY----------QLMRLYAM 263 (325)
T ss_dssp TCTTCE---EEEC-GGGCCHHHHTCHHHHHHTTTCEEEECGGGSCCCSHHHHHHHHHTTTCH----------HHHHHHHH
T ss_pred cCCCCC---EEEe-ccccccCCCCCchhhhhcCCcEEEccccccCCCcHHHHHHHhccCCCc----------chHHHHHH
Confidence 765444 3344 3433 1 1122 1222 223355666665543222 24556799
Q ss_pred HhHHHHHHHHHHhhccCCCCChhhHHHhhhhcccccceeeEEEeCCCcCCCCcEEEEEeecceeEEE
Q 003821 226 AYDSITVVAKSIDGMTSDNSSSKISLGYILSSNFTGLSGPISFRGGKLLNSPILRIINMVGKKYKEI 292 (793)
Q Consensus 226 ~YDAv~~la~Al~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~Fd~~g~~~~~~~~I~~~~~~~~~~V 292 (793)
+|||+.+++++. + ++.+....|+|+||.++||++|+. ...+.+.+++++.++.|
T Consensus 264 gyDA~~l~~~l~-~-----------l~~~~~~~~~G~tG~l~~~~~g~~-~R~l~~~~~~~G~~~~~ 317 (325)
T 2h4a_A 264 GADAWLLINQFN-E-----------LRQVPGYRLSGLTGILSADTNCNV-ERDMTWYQYQDGAIVPV 317 (325)
T ss_dssp HHHHHHHHHTHH-H-----------HHHSTTCCEEETTEEEEECTTCBE-EEECEEEEEETTEEEEC
T ss_pred HHHHHHHHHHHH-H-----------HhhCCCCeeccCceeEEECCCCeE-EEeechhhccCCeEEEe
Confidence 999999876642 2 122445679999999999999985 66788999999887665
No 44
>3ckm_A YRAM (HI1655), LPOA; periplasmic-binding protein, lipoprotein, unliganded, biosynthetic protein; 1.35A {Haemophilus influenzae} SCOP: c.93.1.1
Probab=99.86 E-value=4.2e-21 Score=203.79 Aligned_cols=250 Identities=9% Similarity=-0.003 Sum_probs=189.8
Q ss_pred CcccceEEEEcCCChhhHHHHHHhcc-CCCccEEeeeCCCCCCCCCCCCCCeEEEecCChHHHHHHHHHHHhhcCceEEE
Q 003821 2 IKEKEVKVIVGMETWGAATMVADIGS-RAQVPVLSFAEPAIAPPLTSTRWPFLVRMANSSAEQITCTAALVGSYNWRKVI 80 (793)
Q Consensus 2 i~~~~V~aiiGp~~s~~~~~va~i~~-~~~iP~Is~~~~~~~~~l~~~~~~~~~r~~p~~~~~~~ai~~ll~~~~w~~va 80 (793)
+.+++|.+||||.+|+.+.++++... ...+|+++.+++ +.. ...+++||+.+++..+++++++++...|+++++
T Consensus 54 ~~~~~v~~iiGp~~s~~~~a~~~~~~~~~~v~~~~~~~~---~~~--~~~~~~f~~~~~~~~~~~~~a~~~~~~g~k~~~ 128 (327)
T 3ckm_A 54 AKQAGIKTLVGPLLKQNLDVILADPAQIQGMDVLALNAT---PNS--RAIPQLCYYGLSPEDEAESAANKMWNDGVRNPL 128 (327)
T ss_dssp HHHTTCCEEECCCSHHHHHHHHHCGGGGTTCEEEESCCC---TTC--CCCTTEEECCCCHHHHHHHHHHHHHHTTCCSCE
T ss_pred HHHcCCeEEEEccccccchhhHHHHHhccCceEeccCcC---ccc--ccCCCeEEEecChHHHHHHHHHHHHhcCCeeEE
Confidence 45689999999999988888776554 556666655444 322 234688999999999999999999989999999
Q ss_pred EEEEcCCCccccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcCCceEEEEeccChHHHHHHHHHH
Q 003821 81 IIYEDDATNADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRTESRVFIILQSSLAMGIHLFREA 160 (793)
Q Consensus 81 ii~~dd~~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivvl~~~~~~~~~~l~~a 160 (793)
+++.+++|| .+..+.|++.+++.|++|+....++..+ . ...+.+++..++|++++ .+.+.++..+++++
T Consensus 129 ii~~~~~yg--~~~~~~f~~~~~~~Gg~vv~~~~~~~~~------~--~~~~~~~~~~~~dai~~-~~~~~~~~~i~~q~ 197 (327)
T 3ckm_A 129 VAMPQNDLG--QRVGNAFNVRWQQLAGTDANIRYYNLPA------D--VTYFVQENNSNTTALYA-VASPTELAEMKGYL 197 (327)
T ss_dssp EEEESSHHH--HHHHHHHHHHHHHHHSSCCEEEEESSTT------H--HHHHHHHSCTTCCEEEE-CCCHHHHHHHHHHH
T ss_pred EEecCChHH--HHHHHHHHHHHHHCCCeEEEEEECCCCc------h--hhHHHHHhccCCcEEEE-EcCHHHHHHHHHHH
Confidence 999999999 9999999999999999999988887654 2 34677788889999999 89999999999999
Q ss_pred HHcCCCCCCeEEEEeCCcccc------------cee---e-cccc-cCCchhhhHHHHHHHHhhhhcCCCCCCCCcchhh
Q 003821 161 KEMGLVGPDSVWVIASDTITS------------ALG---I-KTHF-SQDSSSYKIFEDQFRSYFRSEYPEDDVSEPGIYA 223 (793)
Q Consensus 161 ~~~g~~~~~~~wi~~~~~~~~------------~~g---~-~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~a 223 (793)
+++|+..+ ++.+ ++..+ ..| . .++. ....+..+.|.++|++.++. ..+.
T Consensus 198 ~~~g~~~~---~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~----------~~~~ 263 (327)
T 3ckm_A 198 TNIVPNLA---IYAS-SRASASATNTNTDFIAQMNGVQFSDIPFFKDTNSPQYQKLAKSTGGEYQL----------MRLY 263 (327)
T ss_dssp TTTCTTCE---EEEC-GGGCCHHHHTCHHHHHHTTTCEEEECGGGGCCCSHHHHHHHHHTTTCHHH----------HHHH
T ss_pred HhhhccCC---EEee-eccccccchhcchhhhhcCCeEEEcccccCCCCCHHHHHHHHHHHhhcCC----------CchH
Confidence 99998654 4444 33322 111 1 1222 22346677777766655432 2367
Q ss_pred HhHhHHHHHHHHHHhhccCCCCChhhHHHhhhhcccccceeeEEEeCCCcCCCCcEEEEEeecceeEEEEE
Q 003821 224 LRAYDSITVVAKSIDGMTSDNSSSKISLGYILSSNFTGLSGPISFRGGKLLNSPILRIINMVGKKYKEIDF 294 (793)
Q Consensus 224 ~~~YDAv~~la~Al~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~Fd~~g~~~~~~~~I~~~~~~~~~~VG~ 294 (793)
+++|||+.+++.+.+. +.+...+|+|+||.++||++|+. ...+.+.++++|.++.|..
T Consensus 264 AlgyDA~~l~~~l~~~------------~~~~~~~f~G~tG~i~fd~~G~~-~r~l~~~~~~~G~~vpv~d 321 (327)
T 3ckm_A 264 AMGADAWLLINQFNEL------------RQVPGYRLSGLTGILSADTNCNV-ERDMTWYQYQDGAIVPVVD 321 (327)
T ss_dssp HHHHHHHHHHHTHHHH------------HHSTTCCEEETTEEEEECTTCBE-EEECEEEEEETTEEEECC-
T ss_pred HHHHHHHHHHHHHHHh------------cCCCCCCceeceEEEEECCCCCC-ccccEEEEEECCEEEEccc
Confidence 8899999987665432 23345579999999999999984 5678889999998888754
No 45
>3kzg_A Arginine 3RD transport system periplasmic binding protein; arginine transport system, protein structure initiative II(PSI II); 2.06A {Legionella pneumophila subsp} SCOP: c.94.1.0
Probab=99.85 E-value=4.3e-21 Score=193.72 Aligned_cols=212 Identities=14% Similarity=0.226 Sum_probs=178.5
Q ss_pred CcEEEEecCCCCccceEEe-ccCCCCCcceeeeeeHHHHHHHHHHCCCccceeEE------------EEeEEEecEEEec
Q 003821 347 KPLIIGVPARTTFDKFVKL-ISSDNPHKIIYDGYCIELFYKVLQVLKYDLPYEFS------------DYDAAIGDITILV 413 (793)
Q Consensus 347 ~~lrv~~~~~~~~~p~~~~-~~~~~~~~~~~~G~~~dll~~ia~~ln~~~~~~~~------------~~Di~~~~~~~t~ 413 (793)
++||||+. +.|+||.+. +++ + ++.|+++||++.+++++|++++++.. ++|+++++++.++
T Consensus 3 ~~l~v~~~--~~~~P~~~~~~~~----g-~~~G~~~dl~~~i~~~~g~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~~~ 75 (237)
T 3kzg_A 3 LNLTIGTS--KFNPPFEVWSGNN----S-SLYGFDIDLMQEICRRLHATCTFEAYIFDDLFPALKNREVDLVIASMIITD 75 (237)
T ss_dssp CEEEEEEE--SEETTTEECCCTT----S-CCBSHHHHHHHHHHHHTTCEEEEEEECGGGHHHHHHTTSSSEECSSCBCCT
T ss_pred ceEEEEEC--CCCCCeEEEeCCC----C-CEeeehHHHHHHHHHHhCCceEEEEcCHHHHHHHHhCCCCCEEEEccccCh
Confidence 57999996 348899988 544 4 78999999999999999999555544 9999989999999
Q ss_pred ccccceeecccccccceEEEEecCCCCCCcEEecCCChhHHHHHHHHHHHHHHHHHhhhcccCCCCCCCccccchhHHHH
Q 003821 414 NRTRFVEFSQPYTESGLSMVVPAKAEQSPWIFIKPFTWGMWIVTGAILIYTMSVVWFLEHRWNPEFNGPWNIQIGTALWF 493 (793)
Q Consensus 414 ~R~~~~dfs~p~~~~~~~~~v~~~~~~~~~~~l~PF~~~vWl~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (793)
+|.+.++||.||+..+.++++++..
T Consensus 76 ~r~~~~~fs~p~~~~~~~~~~~~~~------------------------------------------------------- 100 (237)
T 3kzg_A 76 ERKKHFIFSLPYMESNSQYITTVDS------------------------------------------------------- 100 (237)
T ss_dssp TGGGTCEECCCSBCCEEEEEEETTC-------------------------------------------------------
T ss_pred hHhccceeeeeeeecceEEEEECCC-------------------------------------------------------
Confidence 9999999999999999999998866
Q ss_pred HHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHhhhheeeeeccCCCCCCChHHhhhCCCcccccCchHHHHHHHh
Q 003821 494 TFSSLFFAHRERIYSNLTRLVVVVWLFVVLILNSSYTASLSSMLTVQRLKPNVTDIGWLKASNLNVGFDGDSFVRNYLEN 573 (793)
Q Consensus 494 ~~~~l~~~~~~~~~s~s~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~~~~~~g~~~~~~~~~~l~~ 573 (793)
++++++||. |.++|+..++....++.+
T Consensus 101 ---------------------------------------------------~~~~~~dL~--g~~i~~~~g~~~~~~~~~ 127 (237)
T 3kzg_A 101 ---------------------------------------------------KISTFDDLH--GKKIGVRKGTPYARQVLS 127 (237)
T ss_dssp ---------------------------------------------------SCCSGGGGT--TCEEEEETTSTHHHHHHH
T ss_pred ---------------------------------------------------CCCCHHHhC--CCEEEEecCCHHHHHHHH
Confidence 379999998 899999888876666665
Q ss_pred hcCCCCccccccCCHHHHHHHhhcCceEEEEechhhHHHHHhccC------C-ceEEeCccc-cccceEEEecCCCc-Ch
Q 003821 574 VLGFKPENILKVDHEYKYITDFESNRIAAAFLELSYERAFLSQHC------K-EYTATIPTY-RFGGFAFVFQKGSP-LA 644 (793)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~c------~-~~~~~~~~~-~~~~~~~~~~k~sp-l~ 644 (793)
. .+..++..+.+.++.+++|.+|++|+++.+...+.++++++. . .+.+++..+ ...+++++++|++| ++
T Consensus 128 ~--~~~~~~~~~~~~~~~~~~l~~G~vDa~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~k~~~~l~ 205 (237)
T 3kzg_A 128 E--NRNNQVIFYELIQDMLLGLSNNQVDASLMDYEAAKYWMASEPYAYKLIGKKYKLIGKKISIGEGYSIMANPDQFVLI 205 (237)
T ss_dssp T--CSSCEEEEESSHHHHHHHHHTTSSSEEEEEHHHHHHHHTTSSTTHHHHCCSEEEEEEEEECTTCBCCEECGGGHHHH
T ss_pred h--CCCCcEEEeCCHHHHHHHHHcCCCCEEEeCcHHHHHHHHhCCccccccCCceEEecCccccCccEEEEEcCCCHHHH
Confidence 5 445677888999999999999999999999999999988865 2 477777666 77889999999977 99
Q ss_pred HHHHHHHHhhhccCchHHHHHHHcCCCCCCC
Q 003821 645 ADFSEAILKLSENGELRSLEEKWFAPSPECS 675 (793)
Q Consensus 645 ~~in~~i~~l~e~G~~~~~~~~w~~~~~~c~ 675 (793)
+.+|++|.+|.++|.+++|.++|+.....|.
T Consensus 206 ~~l~~~l~~l~~~G~~~~i~~k~~~~~~~~~ 236 (237)
T 3kzg_A 206 KKINKILLEMEADGTYLRLYSEYFEGHHHHH 236 (237)
T ss_dssp HHHHHHHHHHHHSSHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHCCcHHHHHHHHhCcccccC
Confidence 9999999999999999999999999864443
No 46
>3k4u_A Binding component of ABC transporter; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; HET: LYS; 2.62A {Wolinella succinogenes} SCOP: c.94.1.0
Probab=99.84 E-value=8.2e-21 Score=192.73 Aligned_cols=216 Identities=18% Similarity=0.269 Sum_probs=187.0
Q ss_pred CCcEEEEecCCCCccceEEeccCCCCCcceeeeeeHHHHHHHHHHCCCccceeEE------------EEeEEEecEEEec
Q 003821 346 AKPLIIGVPARTTFDKFVKLISSDNPHKIIYDGYCIELFYKVLQVLKYDLPYEFS------------DYDAAIGDITILV 413 (793)
Q Consensus 346 ~~~lrv~~~~~~~~~p~~~~~~~~~~~~~~~~G~~~dll~~ia~~ln~~~~~~~~------------~~Di~~~~~~~t~ 413 (793)
.++||||+. +.++||.+.+++ + ++.|+++||++.+++++|++++++.. ++|+++++++.++
T Consensus 4 ~~~l~v~~~--~~~~P~~~~~~~----g-~~~G~~~dl~~~i~~~~g~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~t~ 76 (245)
T 3k4u_A 4 RGELRVGLE--PGYLPFEMKDKK----G-NVIGFDVDLAREMAKAMGVKLKLVPTSWDGLIPGLVTEKFDIIISGMTISQ 76 (245)
T ss_dssp CSEEEEEEC--TTSTTTCEEETT----T-EEESHHHHHHHHHHHHHTCEEEEEECCGGGHHHHHHTTSCSEECSSCBCCH
T ss_pred CCeEEEEEC--CCcCCeeEECCC----C-CCccchHHHHHHHHHHhCCeEEEEEccHHHHHHHHhCCCcCEEEecCcCCH
Confidence 467999996 568888888665 4 89999999999999999999444443 9999988999999
Q ss_pred ccccceeecccccccceEEEEecCCCCCCcEEecCCChhHHHHHHHHHHHHHHHHHhhhcccCCCCCCCccccchhHHHH
Q 003821 414 NRTRFVEFSQPYTESGLSMVVPAKAEQSPWIFIKPFTWGMWIVTGAILIYTMSVVWFLEHRWNPEFNGPWNIQIGTALWF 493 (793)
Q Consensus 414 ~R~~~~dfs~p~~~~~~~~~v~~~~~~~~~~~l~PF~~~vWl~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (793)
+|.+.+.||.||+..+.++++++....
T Consensus 77 ~r~~~~~~s~p~~~~~~~~~~~~~~~~----------------------------------------------------- 103 (245)
T 3k4u_A 77 ERNLRVNFVEPYIVVGQSLLVKKGLEK----------------------------------------------------- 103 (245)
T ss_dssp HHHTTSEECSCSEEECEEEEEETTTTT-----------------------------------------------------
T ss_pred HHHhhcCcchhhheeceEEEEECCccc-----------------------------------------------------
Confidence 999999999999999999999987532
Q ss_pred HHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHhhhheeeeeccCCCCCCChHHhhhCCCcccccCchHHHHHHHh
Q 003821 494 TFSSLFFAHRERIYSNLTRLVVVVWLFVVLILNSSYTASLSSMLTVQRLKPNVTDIGWLKASNLNVGFDGDSFVRNYLEN 573 (793)
Q Consensus 494 ~~~~l~~~~~~~~~s~s~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~~~~~~g~~~~~~~~~~l~~ 573 (793)
.|++++||...|.++|+..++....++.+
T Consensus 104 ---------------------------------------------------~i~~~~dL~~~g~~i~v~~g~~~~~~l~~ 132 (245)
T 3k4u_A 104 ---------------------------------------------------GVKSYKDLDKPELTLVTKFGVSAEYAAKR 132 (245)
T ss_dssp ---------------------------------------------------TCCSGGGGCCSSCEEEEETTSHHHHHHHH
T ss_pred ---------------------------------------------------ccCCHHHhccCCcEEEEeCCcHHHHHHHh
Confidence 58999999877899999999888888877
Q ss_pred hcCCCCccccccCCHHHHHHHhhcCceEEEEechhhHHHHHhccC-CceEEeCccccccceEEEecCCCc-ChHHHHHHH
Q 003821 574 VLGFKPENILKVDHEYKYITDFESNRIAAAFLELSYERAFLSQHC-KEYTATIPTYRFGGFAFVFQKGSP-LAADFSEAI 651 (793)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~c-~~~~~~~~~~~~~~~~~~~~k~sp-l~~~in~~i 651 (793)
. .+..++..+.+..+++++|.+|++|+++.+...+.+++++.. ..+......+...+++++++|++| +++.||++|
T Consensus 133 ~--~~~~~~~~~~~~~~~~~~L~~GrvDa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~ln~~l 210 (245)
T 3k4u_A 133 L--FKNAKLKTYDTEAEAVQEVLNGKADMFIFDLPFNVAFMAQKGQGYLVHLDTSLTYEPLGWAIKKGDPDFLNWLNHFL 210 (245)
T ss_dssp H--CSSSEEEEESSHHHHHHHHHSSSSEEEEEEHHHHHHHHHHTTTTTEEEECCCCSCEEECCEECTTCHHHHHHHHHHH
T ss_pred h--CCcCCEEEeCCHHHHHHHHHcCCCcEEEEcHHHHHHHHhcCCccceeecCCCcccccEEEEEcCCCHHHHHHHHHHH
Confidence 6 455678888999999999999999999999989988877754 446767777778889999999998 999999999
Q ss_pred HhhhccCchHHHHHHHcCCCCCC
Q 003821 652 LKLSENGELRSLEEKWFAPSPEC 674 (793)
Q Consensus 652 ~~l~e~G~~~~~~~~w~~~~~~c 674 (793)
.++.++|.++++.++|+...+-+
T Consensus 211 ~~l~~~g~~~~i~~k~~~~~~~~ 233 (245)
T 3k4u_A 211 AQIKHDGSYDELYERWFVDTKWL 233 (245)
T ss_dssp HHHHHHSHHHHHHHHHHTCCSGG
T ss_pred HHHHhCcHHHHHHHHhcCccccc
Confidence 99999999999999999986433
No 47
>4f3p_A Glutamine-binding periplasmic protein; ssgcid, structural genomics, GLUT seattle structural genomics center for infectious disease; 2.40A {Burkholderia pseudomallei}
Probab=99.84 E-value=2.3e-20 Score=189.93 Aligned_cols=210 Identities=21% Similarity=0.370 Sum_probs=182.6
Q ss_pred CCCcEEEEecCCCCccceEEeccCCCCCcceeeeeeHHHHHHHHHHCCCccceeEE------------EEeEEEecEEEe
Q 003821 345 DAKPLIIGVPARTTFDKFVKLISSDNPHKIIYDGYCIELFYKVLQVLKYDLPYEFS------------DYDAAIGDITIL 412 (793)
Q Consensus 345 ~~~~lrv~~~~~~~~~p~~~~~~~~~~~~~~~~G~~~dll~~ia~~ln~~~~~~~~------------~~Di~~~~~~~t 412 (793)
..++|+|++. +.|+||.+. ++ + ++.|+++||++.+++++|++++++.. ++|+++++++.+
T Consensus 22 ~~~~l~v~~~--~~~~P~~~~-~~----g-~~~G~~~dl~~~i~~~~g~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~~ 93 (249)
T 4f3p_A 22 MAKELVVGTD--TSFMPFEFK-QG----D-KYVGFDLDLWAEIAKGAGWTYKIQPMDFAGLIPALQTQNIDVALSGMTIK 93 (249)
T ss_dssp --CCEEEEEE--SCBTTTBEE-ET----T-EEESHHHHHHHHHHHHHTCCEEEEEECGGGHHHHHHTTSCSEEEEEEECC
T ss_pred cCceEEEEeC--CCCCCeEEe-cC----C-eEEEEhHHHHHHHHHHcCCceEEEecCHHHHHHHHHCCCCCEEEeccccC
Confidence 4578999996 457888887 33 3 89999999999999999999555544 999998999999
Q ss_pred cccccceeecccccccceEEEEecCCCCCCcEEecCCChhHHHHHHHHHHHHHHHHHhhhcccCCCCCCCccccchhHHH
Q 003821 413 VNRTRFVEFSQPYTESGLSMVVPAKAEQSPWIFIKPFTWGMWIVTGAILIYTMSVVWFLEHRWNPEFNGPWNIQIGTALW 492 (793)
Q Consensus 413 ~~R~~~~dfs~p~~~~~~~~~v~~~~~~~~~~~l~PF~~~vWl~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (793)
++|.+.+.||.||+..+.++++++..+
T Consensus 94 ~~r~~~~~~s~p~~~~~~~~~~~~~~~----------------------------------------------------- 120 (249)
T 4f3p_A 94 EERRKAIDFSDPYYDSGLAAMVQANNT----------------------------------------------------- 120 (249)
T ss_dssp HHHHTTEEECSCCEEEEEEEEEETTCC-----------------------------------------------------
T ss_pred HHHHcCcceecceeeccEEEEEECCCC-----------------------------------------------------
Confidence 999999999999999999999988764
Q ss_pred HHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHhhhheeeeeccCCCCCCChHHhhhCCCcccccCchHHHHHHH
Q 003821 493 FTFSSLFFAHRERIYSNLTRLVVVVWLFVVLILNSSYTASLSSMLTVQRLKPNVTDIGWLKASNLNVGFDGDSFVRNYLE 572 (793)
Q Consensus 493 ~~~~~l~~~~~~~~~s~s~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~~~~~~g~~~~~~~~~~l~ 572 (793)
.|++++||. |.++|+..++....++.
T Consensus 121 ----------------------------------------------------~i~~~~dL~--g~~i~v~~g~~~~~~l~ 146 (249)
T 4f3p_A 121 ----------------------------------------------------TIKSIDDLN--GKVIAAKTGTATIDWIK 146 (249)
T ss_dssp ----------------------------------------------------SCCSSGGGT--TSEEEEETTSHHHHHHH
T ss_pred ----------------------------------------------------CcCChHHhC--CCEEEEeCCChHHHHHH
Confidence 489999998 89999988888888887
Q ss_pred hhcCCCCccccccCCHHHHHHHhhcCceEEEEechhhHHHHHhccC-CceEEeCccccccceEEEecCCCcChHHHHHHH
Q 003821 573 NVLGFKPENILKVDHEYKYITDFESNRIAAAFLELSYERAFLSQHC-KEYTATIPTYRFGGFAFVFQKGSPLAADFSEAI 651 (793)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~c-~~~~~~~~~~~~~~~~~~~~k~spl~~~in~~i 651 (793)
+. .+..++..+.+.++.+++|.+|++|+++.+...+.+++++.. ..+.+.+..+...+++++++|++|+++.||++|
T Consensus 147 ~~--~~~~~~~~~~~~~~~~~~L~~GrvDa~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~k~~~l~~~l~~~l 224 (249)
T 4f3p_A 147 AH--LKPKEIRQFPNIDQAYLALEAGRVDAAMHDTPNVLFFVNNEGKGRVKVAGAPVSGDKYGIGFPKGSPLVAKVNAEL 224 (249)
T ss_dssp HH--CCCSEEEEESSHHHHHHHHHTTSSSEEEEEHHHHHHHHHTTTTTTEEEEEEEEEEEEEEEEEETTCTHHHHHHHHH
T ss_pred hc--CCCceEEEcCCHHHHHHHHHcCCeeEEEeCcHHHHHHHHhCCCCceEEecCCCCCccEEEEEcCCchHHHHHHHHH
Confidence 76 455677888999999999999999999999999999888765 347777777778889999999999999999999
Q ss_pred HhhhccCchHHHHHHHcCCC
Q 003821 652 LKLSENGELRSLEEKWFAPS 671 (793)
Q Consensus 652 ~~l~e~G~~~~~~~~w~~~~ 671 (793)
.++.++|.++++.++|+...
T Consensus 225 ~~l~~~g~~~~i~~k~~~~~ 244 (249)
T 4f3p_A 225 ARMKADGRYAKIYKKWFGSE 244 (249)
T ss_dssp HHHHHHTHHHHHHHHHHSSC
T ss_pred HHHHhCCcHHHHHHHHcCCC
Confidence 99999999999999999976
No 48
>2v3u_A Glutamate receptor delta-2 subunit; postsynaptic membrane, ionotropic glutamate receptors, transmembrane, membrane protein; 1.74A {Rattus norvegicus} PDB: 2v3t_A
Probab=99.84 E-value=2.7e-20 Score=191.32 Aligned_cols=220 Identities=18% Similarity=0.265 Sum_probs=170.7
Q ss_pred CCCcEEEEecCCCCccceEEeccCCCCCcceeeeeeHHHHHHHHHHCCCccceeE-------------E-----------
Q 003821 345 DAKPLIIGVPARTTFDKFVKLISSDNPHKIIYDGYCIELFYKVLQVLKYDLPYEF-------------S----------- 400 (793)
Q Consensus 345 ~~~~lrv~~~~~~~~~p~~~~~~~~~~~~~~~~G~~~dll~~ia~~ln~~~~~~~-------------~----------- 400 (793)
++++|||++... +||.+.+.+..+...++.||++||++++++++|+++++.. .
T Consensus 1 ~~~~l~v~~~~~---pP~~~~~~~~~g~~g~~~G~~~dl~~~i~~~lg~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~g 77 (265)
T 2v3u_A 1 GGVVLRVVTVLE---EPFVMVSENVLGKPKKYQGFSIDVLDALSNYLGFNYEIYVAPDHKYGSPQEDGTWNGLVGELVFK 77 (265)
T ss_dssp CCCEEEEEECCB---TTTBEEECCSTTCCCEEESHHHHHHHHHHHHHTCEEEEEECTTCCCCCBCTTSCBCHHHHHHHTT
T ss_pred CCeEEEEEEecc---CCeEEEecCCCCCcceEeEEEHHHHHHHHHHcCCcEEEEEccCCcccccCCCCCcchHHHHHHcC
Confidence 367899999755 5667765432211138999999999999999999977763 1
Q ss_pred EEeEEEecEEEecccccceeecccccccceEEEEecCCCCCCcEEecCCChhHHHHHHHHHHHHHHHHHhhhcccCCCCC
Q 003821 401 DYDAAIGDITILVNRTRFVEFSQPYTESGLSMVVPAKAEQSPWIFIKPFTWGMWIVTGAILIYTMSVVWFLEHRWNPEFN 480 (793)
Q Consensus 401 ~~Di~~~~~~~t~~R~~~~dfs~p~~~~~~~~~v~~~~~~~~~~~l~PF~~~vWl~i~~~~i~~~~~~~~~~~~~~~~~~ 480 (793)
++|++++++++|++|.+.++||.||+..+.+++++++.
T Consensus 78 ~~D~~~~~~~~t~~R~~~~~fs~p~~~~~~~~~~~~~~------------------------------------------ 115 (265)
T 2v3u_A 78 RADIGISALTITPDRENVVDFTTRYMDYSVGVLLRRGT------------------------------------------ 115 (265)
T ss_dssp SCSEECSSCBCCHHHHTTEEECSCSEEECEEEEEETTC------------------------------------------
T ss_pred CcCeEEeeeEeehhhhccccccceeeeccEEEEEECCC------------------------------------------
Confidence 99999989999999999999999999999999998765
Q ss_pred CCccccchhHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHhhhheeeeeccCCCCCCChHHhhh-CCCcc
Q 003821 481 GPWNIQIGTALWFTFSSLFFAHRERIYSNLTRLVVVVWLFVVLILNSSYTASLSSMLTVQRLKPNVTDIGWLKA-SNLNV 559 (793)
Q Consensus 481 ~~~~~~~~~~~~~~~~~l~~~~~~~~~s~s~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~-~~~~~ 559 (793)
+|++++||.. -++..
T Consensus 116 ----------------------------------------------------------------~i~~~~dL~~~v~v~~ 131 (265)
T 2v3u_A 116 ----------------------------------------------------------------SIQSLQDLSKQTDIPY 131 (265)
T ss_dssp ----------------------------------------------------------------CCCSHHHHHTCSSSCE
T ss_pred ----------------------------------------------------------------CccchhhhhhhhcEEE
Confidence 4789999972 13344
Q ss_pred cccCchHHHHHHHhhcCCC-----------------CccccccCCHHHHHHHhhcCceEEEEechhhHHHHHhcc--CCc
Q 003821 560 GFDGDSFVRNYLENVLGFK-----------------PENILKVDHEYKYITDFESNRIAAAFLELSYERAFLSQH--CKE 620 (793)
Q Consensus 560 g~~~~~~~~~~l~~~~~~~-----------------~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~--c~~ 620 (793)
|...+.....++.+..... ..++..+.+..+++++|.+|++ +++.+...+.++++++ |+
T Consensus 132 g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~G~~-a~~~~~~~~~~~~~~~~~~~- 209 (265)
T 2v3u_A 132 GTVLDSAVYQHVRMKGLNPFERDSMYSQMWRMINRSNGSENNVLESQAGIQKVKYGNY-AFVWDAAVLEYVAINDPDCS- 209 (265)
T ss_dssp ECBTTSHHHHHHHHHHTCTTCSCTHHHHHHHHHCC-----CCBSSHHHHHHHHHHSSC-EEEEEHHHHHHHHHHCTTCC-
T ss_pred EEeccHHHHHHHHhcCCCcccccHHHHHHHHHHHhhcCcccccCCHHHHHHHHHcCCE-EEEEcchHHHHHHhcCCCcc-
Confidence 5555556666665431110 0123467889999999999999 8888888888887653 55
Q ss_pred eEEeCccccccceEEEecCCCcChHHHHHHHHhhhccCchHHHHHHHcCCCCCCC
Q 003821 621 YTATIPTYRFGGFAFVFQKGSPLAADFSEAILKLSENGELRSLEEKWFAPSPECS 675 (793)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~k~spl~~~in~~i~~l~e~G~~~~~~~~w~~~~~~c~ 675 (793)
+.+++..+...+++++++|++|+++.||++|.+|.++|.+++|.++|+...+.|.
T Consensus 210 l~~~~~~~~~~~~~~~~~k~~~l~~~in~~l~~l~~~g~~~~i~~kw~~~~~~c~ 264 (265)
T 2v3u_A 210 FYTVGNTVADRGYGIALQHGSPYRDVFSQRILELQQSGDMDILKHKWWPKNGQCD 264 (265)
T ss_dssp EEEEC---CCEEECCEEETTCTTHHHHHHHHHHHHHHTHHHHHHHHHCCCCCC--
T ss_pred EEEeccccCCcceEEEEeCCCccHHHHHHHHHHHhhCChHHHHHhhcCCCcCcCC
Confidence 7777777777889999999999999999999999999999999999999888886
No 49
>1mqi_A Glutamate receptor 2; GLUR2, ligand binding core, S1S2, partial agonist, WILLARDIINES, fluoro-WILLARDIINE, membrane protein; HET: FWD; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1ftj_A* 1ftl_A* 1fto_A 1fw0_A* 1m5b_A* 1ftm_A* 1m5c_A* 1mm6_A* 1mm7_A* 1mqg_A* 1m5e_A* 1mqj_A* 1ms7_A* 1mxu_A* 1mxv_A 1mxw_A 1mxx_A 1mxy_A 1mxz_A 1my0_A ...
Probab=99.83 E-value=6e-20 Score=188.50 Aligned_cols=216 Identities=21% Similarity=0.357 Sum_probs=172.2
Q ss_pred CCcEEEEecCCCCccceEEeccCC--CCCcceeeeeeHHHHHHHHHHCCCccceeE--------------E---------
Q 003821 346 AKPLIIGVPARTTFDKFVKLISSD--NPHKIIYDGYCIELFYKVLQVLKYDLPYEF--------------S--------- 400 (793)
Q Consensus 346 ~~~lrv~~~~~~~~~p~~~~~~~~--~~~~~~~~G~~~dll~~ia~~ln~~~~~~~--------------~--------- 400 (793)
+++|+|++.. ++||.+.+.+. .+++.++.||++||++++++++|++++++. .
T Consensus 3 ~~~l~v~~~~---~pP~~~~~~~~~~~~~~g~~~G~~~dl~~~ia~~lg~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~ 79 (263)
T 1mqi_A 3 NKTVVVTTIL---ESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELV 79 (263)
T ss_dssp CCCEEEEECC---BTTTBEECTTGGGCCGGGGEESHHHHHHHHHHHHHTCCEEEEECTTCCCCCBCTTTCCBCHHHHHHH
T ss_pred CeEEEEEEec---CCCcEEEecCcccccCCCceeeeHHHHHHHHHHHcCceEEEEEccccccCccCCCCCCcHHHHHHHH
Confidence 4679999864 67778775420 001127999999999999999999966653 2
Q ss_pred --EEeEEEecEEEecccccceeecccccccceEEEEecCCCCCCcEEecCCChhHHHHHHHHHHHHHHHHHhhhcccCCC
Q 003821 401 --DYDAAIGDITILVNRTRFVEFSQPYTESGLSMVVPAKAEQSPWIFIKPFTWGMWIVTGAILIYTMSVVWFLEHRWNPE 478 (793)
Q Consensus 401 --~~Di~~~~~~~t~~R~~~~dfs~p~~~~~~~~~v~~~~~~~~~~~l~PF~~~vWl~i~~~~i~~~~~~~~~~~~~~~~ 478 (793)
++|++++++++|++|.+.++||.||+..+.+++++++.
T Consensus 80 ~g~~D~~~~~~~~t~~R~~~~~fs~p~~~~~~~~~~~~~~---------------------------------------- 119 (263)
T 1mqi_A 80 YGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGT---------------------------------------- 119 (263)
T ss_dssp TTSCSEECSSCBCCHHHHTTEEECSCSEEECEEEEEETTC----------------------------------------
T ss_pred cCCcCEEEEeeEecHHHHhhcccccceecccEEEEEcCcc----------------------------------------
Confidence 89999888999999999999999999999999998765
Q ss_pred CCCCccccchhHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHhhhheeeeeccCCCCCCChHHhhhCCCc
Q 003821 479 FNGPWNIQIGTALWFTFSSLFFAHRERIYSNLTRLVVVVWLFVVLILNSSYTASLSSMLTVQRLKPNVTDIGWLKASNLN 558 (793)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~s~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~~~~~ 558 (793)
+|++++||. |.+
T Consensus 120 ------------------------------------------------------------------~i~~~~dL~--g~~ 131 (263)
T 1mqi_A 120 ------------------------------------------------------------------PIESAEDLS--KQT 131 (263)
T ss_dssp ------------------------------------------------------------------SCCSHHHHH--TCS
T ss_pred ------------------------------------------------------------------ccCCHHHHh--ccc
Confidence 378999998 554
Q ss_pred ---ccc-cCchHHHHHHHhhcC--C--------CCccccccCCHHHHHHHh--hcCceEEEEechhhHHHHHhcc-CCce
Q 003821 559 ---VGF-DGDSFVRNYLENVLG--F--------KPENILKVDHEYKYITDF--ESNRIAAAFLELSYERAFLSQH-CKEY 621 (793)
Q Consensus 559 ---~g~-~~~~~~~~~l~~~~~--~--------~~~~~~~~~~~~~~~~~l--~~g~~~a~~~~~~~~~~~~~~~-c~~~ 621 (793)
+|+ ..++.. .++.+... + ....+..+.+..+++++| .+|+ |+++.+...+.++.+++ |+ +
T Consensus 132 ~~~ig~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~-da~~~~~~~~~~~~~~~~~~-~ 208 (263)
T 1mqi_A 132 EIAYGTLDSGSTK-EFFRRSKIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSKGK-YAYLLESTMNEYIEQRKPCD-T 208 (263)
T ss_dssp SSEEECBSSSHHH-HHHHHCCSHHHHHHHHHHHHCSSCCCBSSHHHHHHHHHHTTTS-EEEEEEHHHHHHHTTSTTCC-E
T ss_pred CeeEEEEeccHHH-HHHHhccchhHHHHHHHHhhCCCceecCCHHHHHHHHhhcCCc-EEEEechHHHHHHHhcCCCc-e
Confidence 565 445544 34333210 0 112456788999999999 9999 89999998888888775 44 6
Q ss_pred EEeCccccccceEEEecCCCcChHHHHHHHHhhhccCchHHHHHHHcCCCCCCC
Q 003821 622 TATIPTYRFGGFAFVFQKGSPLAADFSEAILKLSENGELRSLEEKWFAPSPECS 675 (793)
Q Consensus 622 ~~~~~~~~~~~~~~~~~k~spl~~~in~~i~~l~e~G~~~~~~~~w~~~~~~c~ 675 (793)
.+++..+...+++++++|++++++.+|++|.+|.++|.+++|.++|+.....|+
T Consensus 209 ~~~~~~~~~~~~~~~~~k~~~l~~~in~~l~~l~~~g~~~~i~~k~~~~~~~C~ 262 (263)
T 1mqi_A 209 MKVGGNLDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWWYDKGECG 262 (263)
T ss_dssp EEESCCSCCEEECCEEETTCTTHHHHHHHHHHHHHTTHHHHHHHHHHTTTCSCC
T ss_pred EEcCCcccccceEEEEeCCCccHHHHHHHHHHHHhcccHHHHHHHHcCCCCCCC
Confidence 667777777789999999999999999999999999999999999999888896
No 50
>3i6v_A Periplasmic His/Glu/Gln/Arg/opine family-binding; structural genomics, transporter, PSI-2, protein structure initiative; HET: LYS; 2.00A {Silicibacter pomeroyi} SCOP: c.94.1.0
Probab=99.82 E-value=3.9e-20 Score=186.08 Aligned_cols=206 Identities=17% Similarity=0.262 Sum_probs=173.6
Q ss_pred CCcEEEEecCCCCccceEEeccCCCCCcceeeeeeHHHHHHHHHHCCCccceeEE------------EEeEEEecEEEec
Q 003821 346 AKPLIIGVPARTTFDKFVKLISSDNPHKIIYDGYCIELFYKVLQVLKYDLPYEFS------------DYDAAIGDITILV 413 (793)
Q Consensus 346 ~~~lrv~~~~~~~~~p~~~~~~~~~~~~~~~~G~~~dll~~ia~~ln~~~~~~~~------------~~Di~~~~~~~t~ 413 (793)
.++||||+. +.|+||.+.+++ + ++.|+++||++++++++|++++++.. ++|+++++++.|+
T Consensus 4 a~~l~v~~~--~~~~P~~~~~~~----g-~~~G~~~dl~~~i~~~~g~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~t~ 76 (232)
T 3i6v_A 4 ADTVRMGTE--GAYPPYNFINDA----G-EVDGFERELGDELCKRAGLTCEWVKNDWDSIIPNLVSGNYDTIIAGMSITD 76 (232)
T ss_dssp --CEEEEEC--SEETTTEEECTT----S-CEESHHHHHHHHHHHHHTCCEEEEECCGGGHHHHHHTTSCSEECSSCBCCH
T ss_pred CCEEEEEEC--CCCCCeeEECCC----C-CEeeehHHHHHHHHHHcCCceEEEECCHHHHHHHHHCCCCCEEEeCCcCCH
Confidence 467999985 458899998765 4 89999999999999999999444433 9999989999999
Q ss_pred ccccceeecccccccceEEEEecCCCCCCcEEecCCChhHHHHHHHHHHHHHHHHHhhhcccCCCCCCCccccchhHHHH
Q 003821 414 NRTRFVEFSQPYTESGLSMVVPAKAEQSPWIFIKPFTWGMWIVTGAILIYTMSVVWFLEHRWNPEFNGPWNIQIGTALWF 493 (793)
Q Consensus 414 ~R~~~~dfs~p~~~~~~~~~v~~~~~~~~~~~l~PF~~~vWl~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (793)
+|.+.++||.||+..+.++++++..
T Consensus 77 ~r~~~~~fs~p~~~~~~~~~~~~~~------------------------------------------------------- 101 (232)
T 3i6v_A 77 ERDEVIDFTQNYIPPTASSYVATSD------------------------------------------------------- 101 (232)
T ss_dssp HHHTTSEEEEEEECCCEEEEEESST-------------------------------------------------------
T ss_pred HHHhhcCcccccccCCeEEEEECCC-------------------------------------------------------
Confidence 9999999999999999999987642
Q ss_pred HHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHhhhheeeeeccCCCCCCChHHhhhCCCcccccCchHHHHHHHh
Q 003821 494 TFSSLFFAHRERIYSNLTRLVVVVWLFVVLILNSSYTASLSSMLTVQRLKPNVTDIGWLKASNLNVGFDGDSFVRNYLEN 573 (793)
Q Consensus 494 ~~~~l~~~~~~~~~s~s~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~~~~~~g~~~~~~~~~~l~~ 573 (793)
++||. | ++|+..++....++.+
T Consensus 102 -------------------------------------------------------~~dL~--g-~igv~~g~~~~~~l~~ 123 (232)
T 3i6v_A 102 -------------------------------------------------------GADLS--G-IVAAQTATIQAGYIAE 123 (232)
T ss_dssp -------------------------------------------------------TCCTT--S-EEEEETTSHHHHHHHH
T ss_pred -------------------------------------------------------hHHhC--C-CEEEecCchHHHHHHh
Confidence 44665 7 9999999888888877
Q ss_pred hcCCCCccccccCCHHHHHHHhhcCceEEEEechhhHHHHHhccCCceEEeCc-cccccceEEEecCCCc-ChHHHHHHH
Q 003821 574 VLGFKPENILKVDHEYKYITDFESNRIAAAFLELSYERAFLSQHCKEYTATIP-TYRFGGFAFVFQKGSP-LAADFSEAI 651 (793)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~c~~~~~~~~-~~~~~~~~~~~~k~sp-l~~~in~~i 651 (793)
. ..++..+.+.++++++|.+|++|+++.+...+.+++++....+.+++. .+...+++++++|++| +++.||++|
T Consensus 124 ~----~~~~~~~~~~~~~~~~L~~GrvDa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~ln~~l 199 (232)
T 3i6v_A 124 S----GATLVEFATPEETIAAVRNGEADAVFADRDYLVPIVAESGGELMFVGDDVPLGGGVGMGLRESDGELRGKFDAAI 199 (232)
T ss_dssp S----SSEEEEESSHHHHHHHHHTTSSSEEEEEHHHHHHHHHHTTTSSEEEEEEEECSSCEEEEECTTCHHHHHHHHHHH
T ss_pred c----CCeEEEeCCHHHHHHHHHcCCcCEEEEChHHHHHHHHhCCCCeEEecCCCCCCCcEEEEEeCCCHHHHHHHHHHH
Confidence 5 467778899999999999999999999999999988886333565553 4556789999999987 999999999
Q ss_pred HhhhccCchHHHHHHHcCCCCCCC
Q 003821 652 LKLSENGELRSLEEKWFAPSPECS 675 (793)
Q Consensus 652 ~~l~e~G~~~~~~~~w~~~~~~c~ 675 (793)
.+|.++|.++++.++|+.....|.
T Consensus 200 ~~l~~~G~~~~i~~k~~~~~~~~~ 223 (232)
T 3i6v_A 200 TSMKEDGTLNTMIKKWFGEDAAVY 223 (232)
T ss_dssp HHHHHTSHHHHHHHHHHCTTSCCC
T ss_pred HHHHHCChHHHHHHHHcCCCCCcc
Confidence 999999999999999999874443
No 51
>3kbr_A Cyclohexadienyl dehydratase; pseudomonas aeruginos structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Pseudomonas aeruginosa}
Probab=99.82 E-value=3.4e-20 Score=187.27 Aligned_cols=210 Identities=15% Similarity=0.221 Sum_probs=179.0
Q ss_pred CCcEEEEecCCCCccceEEeccCCCCCcceeeeeeHHHHHHHHHHCCCccceeEE------------EEeEEEecEEEec
Q 003821 346 AKPLIIGVPARTTFDKFVKLISSDNPHKIIYDGYCIELFYKVLQVLKYDLPYEFS------------DYDAAIGDITILV 413 (793)
Q Consensus 346 ~~~lrv~~~~~~~~~p~~~~~~~~~~~~~~~~G~~~dll~~ia~~ln~~~~~~~~------------~~Di~~~~~~~t~ 413 (793)
.++||||+. +.|+||.+.+.+ + ++.|+++||++.+++++|++++++.. ++|+++++++.++
T Consensus 14 ~~~l~v~~~--~~~~P~~~~~~~----g-~~~G~~~dl~~~i~~~~g~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~t~ 86 (239)
T 3kbr_A 14 SGVLRVATT--GDYKPFSYRTEE----G-GYAGFDVDMAQRLAESLGAKLVVVPTSWPNLMRDFADDRFDIAMSGISINL 86 (239)
T ss_dssp HTEEEEEEC--SEETTTEEECTT----S-CEESHHHHHHHHHHHHTTCEEEEEECCTTTHHHHHHTTCCSEECSSCBCCH
T ss_pred CCeEEEEEC--CCCCCeeEECCC----C-CEEeehHHHHHHHHHHHCCceEEEEeCHHHHHHHHHCCCcCEEEeCCcCCH
Confidence 467999994 457899988755 4 89999999999999999999544443 9999988999999
Q ss_pred ccccceeecccccccceEEEEecCCCCCCcEEecCCChhHHHHHHHHHHHHHHHHHhhhcccCCCCCCCccccchhHHHH
Q 003821 414 NRTRFVEFSQPYTESGLSMVVPAKAEQSPWIFIKPFTWGMWIVTGAILIYTMSVVWFLEHRWNPEFNGPWNIQIGTALWF 493 (793)
Q Consensus 414 ~R~~~~dfs~p~~~~~~~~~v~~~~~~~~~~~l~PF~~~vWl~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (793)
+|.+.++||.||+..+.+++++++...
T Consensus 87 ~r~~~~~fs~p~~~~~~~~~~~~~~~~----------------------------------------------------- 113 (239)
T 3kbr_A 87 ERQRQAYFSIPYLRDGKTPITLCSEEA----------------------------------------------------- 113 (239)
T ss_dssp HHHTTCEECSCSEEECEEEEEEGGGGG-----------------------------------------------------
T ss_pred HHcCccccchHHhccCcEEEEECCccc-----------------------------------------------------
Confidence 999999999999999999999887532
Q ss_pred HHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHhhhheeeeeccCCCCCCChHHhhhCCCcccccCchHHHHHHHh
Q 003821 494 TFSSLFFAHRERIYSNLTRLVVVVWLFVVLILNSSYTASLSSMLTVQRLKPNVTDIGWLKASNLNVGFDGDSFVRNYLEN 573 (793)
Q Consensus 494 ~~~~l~~~~~~~~~s~s~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~~~~~~g~~~~~~~~~~l~~ 573 (793)
.|++++||...|.++|+..++....++.+
T Consensus 114 ---------------------------------------------------~i~~~~dL~~~g~~v~~~~g~~~~~~l~~ 142 (239)
T 3kbr_A 114 ---------------------------------------------------RFQTLEQIDQPGVTAIVNPGGTNEKFARA 142 (239)
T ss_dssp ---------------------------------------------------GGSSHHHHSSTTCEEEECTTSHHHHHHHH
T ss_pred ---------------------------------------------------ccCCHHHhcCCCcEEEEcCCCcHHHHHHH
Confidence 48999999877899999998888888877
Q ss_pred hcCCCCccccccCCHHHHHHHhhcCceEEEEechhhHHHHHhccCCceEEeC--ccccccceEEEecCCCc-ChHHHHHH
Q 003821 574 VLGFKPENILKVDHEYKYITDFESNRIAAAFLELSYERAFLSQHCKEYTATI--PTYRFGGFAFVFQKGSP-LAADFSEA 650 (793)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~c~~~~~~~--~~~~~~~~~~~~~k~sp-l~~~in~~ 650 (793)
. .+..++..+.+..+.+++|.+|++|+++.+...+.++++++.+ +.++. ..+...+++++++| ++ +++.+|++
T Consensus 143 ~--~~~~~~~~~~~~~~~~~~l~~grvDa~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~k-~~~l~~~ln~~ 218 (239)
T 3kbr_A 143 N--LKKARILVHPDNVTIFQQIVDGKADLMMTDAIEARLQSRLHPE-LCAVHPQQPFDFAEKAYLLPR-DEAFKRYVDQW 218 (239)
T ss_dssp H--CSSSEEEECCCTTTHHHHHHTTSCSEEEEEHHHHHHHHHHCTT-EEECCCC-CCCCEEECCEECS-CHHHHHHHHHH
T ss_pred h--CCCCceEEeCCHHHHHHHHHcCCcCEEEEchHHHHHHHHhCCC-cEEecCCCCccccceEEEEcC-CHHHHHHHHHH
Confidence 6 4566778889999999999999999999999999999988765 44443 33566788999999 55 99999999
Q ss_pred HHhhhccCchHHHHHHHcCC
Q 003821 651 ILKLSENGELRSLEEKWFAP 670 (793)
Q Consensus 651 i~~l~e~G~~~~~~~~w~~~ 670 (793)
|.+|.++|.++++.++|+..
T Consensus 219 l~~l~~~g~~~~i~~k~~~~ 238 (239)
T 3kbr_A 219 LHIAEQSGLLRQRMEHWLEY 238 (239)
T ss_dssp HHHHHHHTHHHHHHHHHC--
T ss_pred HHHHHHCCcHHHHHHHHhcc
Confidence 99999999999999999864
No 52
>3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic protein, arginine protein binding, transport protein; 1.92A {Chlamydia trachomatis} SCOP: c.94.1.0
Probab=99.82 E-value=7e-20 Score=185.36 Aligned_cols=206 Identities=19% Similarity=0.253 Sum_probs=180.1
Q ss_pred CCcEEEEecCCCCccceEEeccCCCCCcceeeeeeHHHHHHHHHHCCCccceeEE------------EEeEEEecEEEec
Q 003821 346 AKPLIIGVPARTTFDKFVKLISSDNPHKIIYDGYCIELFYKVLQVLKYDLPYEFS------------DYDAAIGDITILV 413 (793)
Q Consensus 346 ~~~lrv~~~~~~~~~p~~~~~~~~~~~~~~~~G~~~dll~~ia~~ln~~~~~~~~------------~~Di~~~~~~~t~ 413 (793)
.++|+||+ .+.++||.+.+++ + ++.|+++||++.+++++|++++++.. ++|++++++..++
T Consensus 10 ~~~l~v~~--~~~~~P~~~~~~~----g-~~~G~~~dl~~~i~~~~g~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~~~ 82 (242)
T 3del_B 10 SEKFIVGT--NATYPPFEFVDKR----G-EVVGFDIDLAREISNKLGKTLDVREFSFDALILNLKQHRIDAVITGMSITP 82 (242)
T ss_dssp -CEEEEEE--CSCBTTTBEECTT----S-CEESHHHHHHHHHHHHHTCEEEEEECCGGGHHHHHHTTSSSEECSSBBCCH
T ss_pred CCcEEEEe--CCCCCCeeEECCC----C-CEEEeeHHHHHHHHHHcCCceEEEEcCHHHHHHHHhCCCcCEEEecCcCCH
Confidence 46799999 4468899888665 4 89999999999999999999444433 9999988999999
Q ss_pred ccccceeeccccc--ccceEEEEecCCCCCCcEEecCCChhHHHHHHHHHHHHHHHHHhhhcccCCCCCCCccccchhHH
Q 003821 414 NRTRFVEFSQPYT--ESGLSMVVPAKAEQSPWIFIKPFTWGMWIVTGAILIYTMSVVWFLEHRWNPEFNGPWNIQIGTAL 491 (793)
Q Consensus 414 ~R~~~~dfs~p~~--~~~~~~~v~~~~~~~~~~~l~PF~~~vWl~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (793)
+|.+.++| .||+ ..+.++++++..
T Consensus 83 ~r~~~~~~-~p~~~~~~~~~~~~~~~~----------------------------------------------------- 108 (242)
T 3del_B 83 SRLKEILM-IPYYGEEIKHLVLVFKGE----------------------------------------------------- 108 (242)
T ss_dssp HHHTTEEE-EEEEEEEESEEEEEEESC-----------------------------------------------------
T ss_pred HHHhcccc-eeeeecCCceEEEEeCCC-----------------------------------------------------
Confidence 99999999 9999 899999998873
Q ss_pred HHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHhhhheeeeeccCCCCCCChHHhhhCCCcccccCchHHHHHH
Q 003821 492 WFTFSSLFFAHRERIYSNLTRLVVVVWLFVVLILNSSYTASLSSMLTVQRLKPNVTDIGWLKASNLNVGFDGDSFVRNYL 571 (793)
Q Consensus 492 ~~~~~~l~~~~~~~~~s~s~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~~~~~~g~~~~~~~~~~l 571 (793)
.|++++||. |.++|+..++....++
T Consensus 109 -----------------------------------------------------~i~~~~dL~--g~~i~v~~g~~~~~~l 133 (242)
T 3del_B 109 -----------------------------------------------------NKHPLPLTQ--YRSVAVQTGTYQEAYL 133 (242)
T ss_dssp -----------------------------------------------------CSCCCCGGG--SSCEEEETTSHHHHHH
T ss_pred -----------------------------------------------------CCCCHHHhC--CCEEEEEcCcHHHHHH
Confidence 589999998 8999998888888888
Q ss_pred HhhcCCCCccccccCCHHHHHHHhhcCceEEEEechhhHHHHHhccCCceEEeCccccccc----eEEEecCCCc-ChHH
Q 003821 572 ENVLGFKPENILKVDHEYKYITDFESNRIAAAFLELSYERAFLSQHCKEYTATIPTYRFGG----FAFVFQKGSP-LAAD 646 (793)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~----~~~~~~k~sp-l~~~ 646 (793)
.. .+..++..+.+.++.+++|.+|++|+++.+...+.+++++... +.+++..+...+ ++++++|++| +++.
T Consensus 134 ~~---~~~~~~~~~~~~~~~~~~L~~g~vDa~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~ 209 (242)
T 3del_B 134 QS---LSEVHIRSFDSTLEVLMEVMHGKSPVAVLEPSIAQVVLKDFPA-LSTATIDLPEDQWVLGYGIGVASDRPALALK 209 (242)
T ss_dssp HH---STTCCEEEESSHHHHHHHHHTTSSSEEEECHHHHHHHGGGCTT-EEEEEEECCGGGCEEEEEEEEETTCHHHHHH
T ss_pred Hh---CCCceEEEECCHHHHHHHHHcCCCCEEEecHHHHHHHHHhCCC-eEEecCccCcccccceEEEEEeCCCHHHHHH
Confidence 77 4556778889999999999999999999999999999988776 777766666666 9999999988 9999
Q ss_pred HHHHHHhhhccCchHHHHHHHcCCC
Q 003821 647 FSEAILKLSENGELRSLEEKWFAPS 671 (793)
Q Consensus 647 in~~i~~l~e~G~~~~~~~~w~~~~ 671 (793)
||++|.++.++|.++++.+||+...
T Consensus 210 l~~~l~~l~~~g~~~~i~~k~~~~~ 234 (242)
T 3del_B 210 IEAAVQEIRKEGVLAELEQKWGLNN 234 (242)
T ss_dssp HHHHHHHHHHTTHHHHHHHHTTGGG
T ss_pred HHHHHHHHHHcCCHHHHHHHHCCCC
Confidence 9999999999999999999999876
No 53
>3hv1_A Polar amino acid ABC uptake transporter substrate binding protein; protein structure initiative II(PSI II), nysgxrc; 1.90A {Streptococcus thermophilus lmg 18311}
Probab=99.81 E-value=1.9e-19 Score=185.42 Aligned_cols=211 Identities=18% Similarity=0.302 Sum_probs=180.8
Q ss_pred CCcEEEEecCCCCccceEEeccCCCCCcceeeeeeHHHHHHHHHHCCCccceeEE------------EEeEEEecEEEec
Q 003821 346 AKPLIIGVPARTTFDKFVKLISSDNPHKIIYDGYCIELFYKVLQVLKYDLPYEFS------------DYDAAIGDITILV 413 (793)
Q Consensus 346 ~~~lrv~~~~~~~~~p~~~~~~~~~~~~~~~~G~~~dll~~ia~~ln~~~~~~~~------------~~Di~~~~~~~t~ 413 (793)
.++||||+. +.|+||.+.+++ + ++.|+++||++.+++++|+++++... ++|++++++..++
T Consensus 20 ~~~l~v~~~--~~~~P~~~~~~~----g-~~~G~~~dl~~~i~~~~g~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~t~ 92 (268)
T 3hv1_A 20 EKKIKIGFD--ATFVPMGYEEKD----G-SYIGFDIDLANAVFKLYGIDVEWQAIDWDMKETELKNGTIDLIWNGYSVTD 92 (268)
T ss_dssp HTEEEEEEC--TEETTTEEECTT----S-CEECHHHHHHHHHHHTTTCEEEEEECCGGGHHHHHHHTSCSEECSSCBCCH
T ss_pred CCcEEEEEC--CCCCCceEECCC----C-CEEEehHHHHHHHHHHhCCcEEEEECCHHHHHHHHHCCCCCEEEecCccCH
Confidence 478999995 357899988755 4 89999999999999999999444443 9999988999999
Q ss_pred ccccceeecccccccceEEEEecCCCCCCcEEecCCChhHHHHHHHHHHHHHHHHHhhhcccCCCCCCCccccchhHHHH
Q 003821 414 NRTRFVEFSQPYTESGLSMVVPAKAEQSPWIFIKPFTWGMWIVTGAILIYTMSVVWFLEHRWNPEFNGPWNIQIGTALWF 493 (793)
Q Consensus 414 ~R~~~~dfs~p~~~~~~~~~v~~~~~~~~~~~l~PF~~~vWl~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (793)
+|.+.+.||.||+..+.++++++..
T Consensus 93 ~r~~~~~fs~p~~~~~~~~~~~~~~------------------------------------------------------- 117 (268)
T 3hv1_A 93 ERKQSADFTEPYMVNEQVLVTKKSS------------------------------------------------------- 117 (268)
T ss_dssp HHHTTCEECCCCEEECEEEEEEGGG-------------------------------------------------------
T ss_pred HHHhcCcCcHHHeeCceEEEEECCC-------------------------------------------------------
Confidence 9999999999999999999998765
Q ss_pred HHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHhhhheeeeeccCCCCCCChHHhhhCCCcccccCchHHHHHHHh
Q 003821 494 TFSSLFFAHRERIYSNLTRLVVVVWLFVVLILNSSYTASLSSMLTVQRLKPNVTDIGWLKASNLNVGFDGDSFVRNYLEN 573 (793)
Q Consensus 494 ~~~~l~~~~~~~~~s~s~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~~~~~~g~~~~~~~~~~l~~ 573 (793)
.|++++||. |.++|+..++....++..
T Consensus 118 ---------------------------------------------------~i~~~~dL~--g~~i~v~~g~~~~~~l~~ 144 (268)
T 3hv1_A 118 ---------------------------------------------------GIDSVAGMA--GKTLGAQAGSSGYDAFNA 144 (268)
T ss_dssp ---------------------------------------------------CCCSSGGGT--TCCEEEETTCHHHHHHHH
T ss_pred ---------------------------------------------------CCCCHHHhC--CCEEEEEeCCchHHHHHH
Confidence 379999997 899999888888777765
Q ss_pred hcC-----CCCccccccCCHHHHHHHhhcCceEEEEechhhHHHHHhccC--CceEEeCccccccceEEEecCCCc-ChH
Q 003821 574 VLG-----FKPENILKVDHEYKYITDFESNRIAAAFLELSYERAFLSQHC--KEYTATIPTYRFGGFAFVFQKGSP-LAA 645 (793)
Q Consensus 574 ~~~-----~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~c--~~~~~~~~~~~~~~~~~~~~k~sp-l~~ 645 (793)
... ++..++..+.+.++.+++|.+|++|+++.+...+.+++++.. ..+.+++..+...+++++++|++| +++
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~GrvDa~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~k~~~~l~~ 224 (268)
T 3hv1_A 145 SPKILKDVVANQKVVQYSTFTQALIDLNSGRIDGLLIDRVYANYYLEKSGVLDQYNVMPAGYEGESFAVGARKVDKTLIK 224 (268)
T ss_dssp CTTTTTTTSGGGCEEEESSHHHHHHHHHHTSCSEEEEEHHHHHHHHHHTTCGGGEEEEECSSCCEEECCEECTTCHHHHH
T ss_pred hhHHHhhhcccceEEEeCCHHHHHHHHHcCCCCEEEeCHHHHHHHHHhCCCCCceEECCCCCCCCcEEEEEcCCCHHHHH
Confidence 321 223566778899999999999999999999999999887754 347777776777889999999998 999
Q ss_pred HHHHHHHhhhccCchHHHHHHHcCCC
Q 003821 646 DFSEAILKLSENGELRSLEEKWFAPS 671 (793)
Q Consensus 646 ~in~~i~~l~e~G~~~~~~~~w~~~~ 671 (793)
.||++|.++.++|.++++.++|+...
T Consensus 225 ~ln~~l~~l~~~g~~~~i~~k~~~~~ 250 (268)
T 3hv1_A 225 KINQGFETLYKNGEFQKISNKWFGED 250 (268)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHhCCHHHHHHHHhcCCC
Confidence 99999999999999999999999864
No 54
>3tql_A Arginine-binding protein; transport and binding proteins, transport protein; HET: MSE ARG; 1.59A {Coxiella burnetii} SCOP: c.94.1.0
Probab=99.81 E-value=1.6e-19 Score=180.46 Aligned_cols=206 Identities=20% Similarity=0.332 Sum_probs=172.8
Q ss_pred CcEEEEecCCCCccceEEeccCCCCCcceeeeeeHHHHHHHHHHCCCccceeEE------------EEeEEEecEEEecc
Q 003821 347 KPLIIGVPARTTFDKFVKLISSDNPHKIIYDGYCIELFYKVLQVLKYDLPYEFS------------DYDAAIGDITILVN 414 (793)
Q Consensus 347 ~~lrv~~~~~~~~~p~~~~~~~~~~~~~~~~G~~~dll~~ia~~ln~~~~~~~~------------~~Di~~~~~~~t~~ 414 (793)
++||||+.. .|+||.+.+++ + ++.|+++|+++.+++++|++++++.. ++|+++++++.+++
T Consensus 2 ~~l~v~~~~--~~~P~~~~~~~----g-~~~G~~~dl~~~i~~~~g~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~~~~ 74 (227)
T 3tql_A 2 DTIKFATEA--TYPPYVYMGPS----G-QVEGFGADIVKAVCKQMQAVCTISNQPWDSLIPSLKLGKFDALFGGMNITTA 74 (227)
T ss_dssp CEEEEEECS--CBTTTBEEC------C-CEESHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHHTSCSEECSSCBCCTT
T ss_pred ceEEEEEcC--CCCCeeEECCC----C-CcccchHHHHHHHHHHhCCeEEEEeCCHHHHHHHHhCCCCCEEEecCcCCHh
Confidence 579999953 58899987765 4 89999999999999999999554443 99999889999999
Q ss_pred cccceeecccccccceEEEEecCCCCCCcEEecCCChhHHHHHHHHHHHHHHHHHhhhcccCCCCCCCccccchhHHHHH
Q 003821 415 RTRFVEFSQPYTESGLSMVVPAKAEQSPWIFIKPFTWGMWIVTGAILIYTMSVVWFLEHRWNPEFNGPWNIQIGTALWFT 494 (793)
Q Consensus 415 R~~~~dfs~p~~~~~~~~~v~~~~~~~~~~~l~PF~~~vWl~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (793)
|.+.+.||.||+..+.++++++..+
T Consensus 75 r~~~~~~s~p~~~~~~~l~~~~~~~------------------------------------------------------- 99 (227)
T 3tql_A 75 RQKEVDFTDPYYTNSVSFIADKNTP------------------------------------------------------- 99 (227)
T ss_dssp GGGTEEECSCSBCCEEEEEEETTSC-------------------------------------------------------
T ss_pred HHhheecccceeccceEEEEeCCCC-------------------------------------------------------
Confidence 9999999999999999999988775
Q ss_pred HHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHhhhheeeeeccCCCCCCChHHhhhCCCcccccCchHHHHHHHhh
Q 003821 495 FSSLFFAHRERIYSNLTRLVVVVWLFVVLILNSSYTASLSSMLTVQRLKPNVTDIGWLKASNLNVGFDGDSFVRNYLENV 574 (793)
Q Consensus 495 ~~~l~~~~~~~~~s~s~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~~~~~~g~~~~~~~~~~l~~~ 574 (793)
.+++++||. |.++|+..++....++.+.
T Consensus 100 --------------------------------------------------~~~~~~dL~--g~~v~~~~g~~~~~~l~~~ 127 (227)
T 3tql_A 100 --------------------------------------------------LTLSKQGLK--GKIIGVQGGTTFDSYLQDS 127 (227)
T ss_dssp --------------------------------------------------CCCSTTTTT--TCEEEEETTSHHHHHHHHH
T ss_pred --------------------------------------------------CCCCHHHhC--CCEEEEEecccHHHHHHHh
Confidence 247899998 8999998888888887776
Q ss_pred cCCCC-ccccccCCHHHHHHHhhcCceEEEEechhhHHHHHhccCC-ceEEeCccccc-----cceEEEecCCCc-ChHH
Q 003821 575 LGFKP-ENILKVDHEYKYITDFESNRIAAAFLELSYERAFLSQHCK-EYTATIPTYRF-----GGFAFVFQKGSP-LAAD 646 (793)
Q Consensus 575 ~~~~~-~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~c~-~~~~~~~~~~~-----~~~~~~~~k~sp-l~~~ 646 (793)
. +. .++..+.+.++.+++|.+|++|+++.+...+.+++++... .+.+++..+.. .+++++++|++| +.+.
T Consensus 128 ~--~~~~~~~~~~~~~~~~~~l~~grvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 205 (227)
T 3tql_A 128 F--GNSITIQRYPSEEDALMDLTSGRVDAVVGDTPLIKQWLKQNGRREYVLIGKPVNDPNYFGKGVGIAVKKGNQALLLK 205 (227)
T ss_dssp H--GGGSEEEEESSHHHHHHHHTTTSSSEEESCHHHHHHHHHHTTCCSEEEEEEECCCGGGCCSCBCCEEETTCHHHHHH
T ss_pred c--cccceEEEcCCHHHHHHHHHcCCcCEEEeChHHHHHHHHhCCCCCEEEecCcccCccccccceEEEEcCCCHHHHHH
Confidence 3 23 5777889999999999999999999999999988877653 25655433333 345899999998 9999
Q ss_pred HHHHHHhhhccCchHHHHHHHc
Q 003821 647 FSEAILKLSENGELRSLEEKWF 668 (793)
Q Consensus 647 in~~i~~l~e~G~~~~~~~~w~ 668 (793)
||++|.++.++|.++++.++|+
T Consensus 206 l~~~l~~l~~~g~~~~i~~k~~ 227 (227)
T 3tql_A 206 LNKALAAIKANGVYAAIVQKYF 227 (227)
T ss_dssp HHHHHHHHHHTSHHHHHHHHHC
T ss_pred HHHHHHHHHhCChHHHHHHhhC
Confidence 9999999999999999999996
No 55
>1wdn_A GLNBP, glutamine binding protein; closed form, complex, peptide, complex (binding protein/peptide); 1.94A {Escherichia coli} SCOP: c.94.1.1 PDB: 1ggg_A
Probab=99.80 E-value=3.6e-19 Score=177.81 Aligned_cols=208 Identities=23% Similarity=0.359 Sum_probs=177.5
Q ss_pred CcEEEEecCCCCccceEEeccCCCCCcceeeeeeHHHHHHHHHHCCCccceeEE------------EEeEEEecEEEecc
Q 003821 347 KPLIIGVPARTTFDKFVKLISSDNPHKIIYDGYCIELFYKVLQVLKYDLPYEFS------------DYDAAIGDITILVN 414 (793)
Q Consensus 347 ~~lrv~~~~~~~~~p~~~~~~~~~~~~~~~~G~~~dll~~ia~~ln~~~~~~~~------------~~Di~~~~~~~t~~ 414 (793)
++|+||+. +.++||.+.+++ ++.|+++|+++.+++++|++++++.. ++|++++++..+++
T Consensus 3 ~~l~v~~~--~~~~P~~~~~~g------~~~G~~~dl~~~~~~~~g~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~~~~ 74 (226)
T 1wdn_A 3 KKLVVATD--TAFVPFEFKQGD------LYVGFDVDLWAAIAKELKLDYELKPMDFSGIIPALQTKNVDLALAGITITDE 74 (226)
T ss_dssp -CEEEEEE--SSBTTTBEEETT------EEESHHHHHHHHHHHHHTCCEEEEEECGGGHHHHHHTTSSSEEEEEEECCHH
T ss_pred ceEEEEEC--CCCCCeeEecCC------cEEEeeHHHHHHHHHHhCCEEEEEECCHHHHHHHHhCCCCCEEEEcCcCCHH
Confidence 56999985 457888887643 89999999999999999999555544 99999988999999
Q ss_pred cccceeecccccccceEEEEecCCCCCCcEEecCCChhHHHHHHHHHHHHHHHHHhhhcccCCCCCCCccccchhHHHHH
Q 003821 415 RTRFVEFSQPYTESGLSMVVPAKAEQSPWIFIKPFTWGMWIVTGAILIYTMSVVWFLEHRWNPEFNGPWNIQIGTALWFT 494 (793)
Q Consensus 415 R~~~~dfs~p~~~~~~~~~v~~~~~~~~~~~l~PF~~~vWl~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (793)
|.+.+.|+.||+..+.++++++..+
T Consensus 75 r~~~~~~~~p~~~~~~~~~~~~~~~------------------------------------------------------- 99 (226)
T 1wdn_A 75 RKKAIDFSDGYYKSGLLVMVKANNN------------------------------------------------------- 99 (226)
T ss_dssp HHTTSEECSCCEEEEEEEEEETTCC-------------------------------------------------------
T ss_pred HhCccccccchhcCceEEEEeCCCC-------------------------------------------------------
Confidence 9999999999999999999988764
Q ss_pred HHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHhhhheeeeeccCCCCCCChHHhhhCCCcccccCchHHHHHHHhh
Q 003821 495 FSSLFFAHRERIYSNLTRLVVVVWLFVVLILNSSYTASLSSMLTVQRLKPNVTDIGWLKASNLNVGFDGDSFVRNYLENV 574 (793)
Q Consensus 495 ~~~l~~~~~~~~~s~s~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~~~~~~g~~~~~~~~~~l~~~ 574 (793)
.|++++||. |.++|+..++....++.+.
T Consensus 100 --------------------------------------------------~i~~~~dL~--g~~i~~~~g~~~~~~l~~~ 127 (226)
T 1wdn_A 100 --------------------------------------------------DVKSVKDLD--GKVVAVKSGTGSVDYAKAN 127 (226)
T ss_dssp --------------------------------------------------SCSSSTTTT--TCEEEEETTSHHHHHHHHH
T ss_pred --------------------------------------------------CCCCHHHhC--CCEEEEEcCCcHHHHHHHh
Confidence 378999998 8999998888888888775
Q ss_pred cCCCCccccccCCHHHHHHHhhcCceEEEEechhhHHHHHhccC-CceEEeCccccccceEEEecCCCc-ChHHHHHHHH
Q 003821 575 LGFKPENILKVDHEYKYITDFESNRIAAAFLELSYERAFLSQHC-KEYTATIPTYRFGGFAFVFQKGSP-LAADFSEAIL 652 (793)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~c-~~~~~~~~~~~~~~~~~~~~k~sp-l~~~in~~i~ 652 (793)
.+..++..+.+..+.+++|.+|++|+++.+...+.+++++.. ..+.+++......+++++++|++| +.+.+|++|.
T Consensus 128 --~~~~~~~~~~~~~~~~~~l~~g~vDa~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~l~ 205 (226)
T 1wdn_A 128 --IKTKDLRQFPNIDNAYMELGTNRADAVLHDTPNILYFIKTAGNGQFKAVGDSLEAQQYGIAFPKGSDELRDKVNGALK 205 (226)
T ss_dssp --CCCSEEEEESSHHHHHHHHHTTSCSEEEEEHHHHHHHHHTTTTTTEEEEEEEEEEEEEEEEECTTCHHHHHHHHHHHH
T ss_pred --CCCceEEEeCCHHHHHHHHHcCCcCEEEeCcHHHHHHHHhCCCCceEEecCCcccCceEEEEeCCCHHHHHHHHHHHH
Confidence 345567778899999999999999999999999888887754 246766666666789999999986 9999999999
Q ss_pred hhhccCchHHHHHHHcCCC
Q 003821 653 KLSENGELRSLEEKWFAPS 671 (793)
Q Consensus 653 ~l~e~G~~~~~~~~w~~~~ 671 (793)
++.++|.++++.++|+...
T Consensus 206 ~l~~~g~~~~i~~k~~~~~ 224 (226)
T 1wdn_A 206 TLRENGTYNEIYKKWFGTE 224 (226)
T ss_dssp HHHHTSHHHHHHHHHHSSC
T ss_pred HHHhCChHHHHHHHHcCCC
Confidence 9999999999999999865
No 56
>3h7m_A Sensor protein; histidine kinase sensor domain, kinase, phosphoprotein, transferase; 2.40A {Geobacter sulfurreducens} SCOP: c.94.1.0
Probab=99.80 E-value=3.3e-19 Score=179.17 Aligned_cols=210 Identities=14% Similarity=0.257 Sum_probs=180.6
Q ss_pred CCCcEEEEecCCCCccceEEeccCCCCCcceeeeeeHHHHHHHHHHCCCccceeEE------------EEeEEEecEEEe
Q 003821 345 DAKPLIIGVPARTTFDKFVKLISSDNPHKIIYDGYCIELFYKVLQVLKYDLPYEFS------------DYDAAIGDITIL 412 (793)
Q Consensus 345 ~~~~lrv~~~~~~~~~p~~~~~~~~~~~~~~~~G~~~dll~~ia~~ln~~~~~~~~------------~~Di~~~~~~~t 412 (793)
..++|+||+ .+.++||.+.+++ + .+.|+++||++.+++++|++++++.. ++|++ +++..+
T Consensus 9 ~~~~l~v~~--~~~~~P~~~~~~~----g-~~~G~~~dl~~~i~~~~g~~~~~~~~~~~~~~~~l~~g~~D~~-~~~~~~ 80 (234)
T 3h7m_A 9 RHRTIVVGG--DRDYPPYEFIDQN----G-KPAGYNVELTRAIAEVMGMTVEFRLGAWSEMFSALKSGRVDVL-QGISWS 80 (234)
T ss_dssp SSSCEEEEE--ETEETTTEEECTT----S-CEESHHHHHHHHHHHHHTCCEEEEEECGGGHHHHHHTTSSSEE-EEEECC
T ss_pred CCCEEEEEe--cCCCCCeEEECCC----C-CEeeeEHHHHHHHHHHcCCceEEEeCCHHHHHHHHhCCCeeEE-EeccCC
Confidence 357799998 3458899988665 4 79999999999999999999666544 99995 789999
Q ss_pred cccccceeecccccccceEEEEecCCCCCCcEEecCCChhHHHHHHHHHHHHHHHHHhhhcccCCCCCCCccccchhHHH
Q 003821 413 VNRTRFVEFSQPYTESGLSMVVPAKAEQSPWIFIKPFTWGMWIVTGAILIYTMSVVWFLEHRWNPEFNGPWNIQIGTALW 492 (793)
Q Consensus 413 ~~R~~~~dfs~p~~~~~~~~~v~~~~~~~~~~~l~PF~~~vWl~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (793)
++|.+.+.||.||+..+.++++++..+
T Consensus 81 ~~r~~~~~~s~p~~~~~~~~~~~~~~~----------------------------------------------------- 107 (234)
T 3h7m_A 81 EKRARQIDFTPPHTIVYHAIFARRDSP----------------------------------------------------- 107 (234)
T ss_dssp HHHHTTEEEEEEEEEEEEEEEEESSSC-----------------------------------------------------
T ss_pred HhHHhhcCCCccccccceEEEEECCCC-----------------------------------------------------
Confidence 999999999999999999999988764
Q ss_pred HHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHhhhheeeeeccCCCCCCChHHhhhCCCcccccCchHHHHHHH
Q 003821 493 FTFSSLFFAHRERIYSNLTRLVVVVWLFVVLILNSSYTASLSSMLTVQRLKPNVTDIGWLKASNLNVGFDGDSFVRNYLE 572 (793)
Q Consensus 493 ~~~~~l~~~~~~~~~s~s~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~~~~~~g~~~~~~~~~~l~ 572 (793)
.+++++||. |.++|+..++....++.
T Consensus 108 ----------------------------------------------------~~~~~~dL~--g~~i~~~~g~~~~~~l~ 133 (234)
T 3h7m_A 108 ----------------------------------------------------PAAGLEDLR--GRKVALHRDGIMHEYLA 133 (234)
T ss_dssp ----------------------------------------------------CCSSGGGGT--TSCEEEETTSHHHHHHH
T ss_pred ----------------------------------------------------CCCCHHHhC--CCEEEEEeCchHHHHHH
Confidence 389999998 89999998888888887
Q ss_pred hhcCCCCccccccCCHHHHHHHhhcCceEEEEechhhHHHHHhccC-CceEEeCccccccceEEEecCCCc-ChHHHHHH
Q 003821 573 NVLGFKPENILKVDHEYKYITDFESNRIAAAFLELSYERAFLSQHC-KEYTATIPTYRFGGFAFVFQKGSP-LAADFSEA 650 (793)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~c-~~~~~~~~~~~~~~~~~~~~k~sp-l~~~in~~ 650 (793)
+. .+..++..+.+.++.+++|.+|++|+++.+...+.+++++.- ..+.+....+...+++++++|++| +++.||++
T Consensus 134 ~~--~~~~~~~~~~~~~~~~~~l~~g~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 211 (234)
T 3h7m_A 134 ER--GYGKDLVLTPTPADALRLLAAGGCDYAVVAMVPGMYIIRENRLTNLVPVARSIAAQRYGYAVRQGDAELLARFSEG 211 (234)
T ss_dssp TT--TCGGGEEEESSHHHHHHHHHTTSSSEEEEEHHHHHHHHHHTTCTTEEEEEEEEEEEEEEEEEETTCHHHHHHHHHH
T ss_pred hc--CCCceEEEeCCHHHHHHHHHcCCceEEEeccHHHHHHHHhcCCCceEEeccccCCCceEEEEeCCCHHHHHHHHHH
Confidence 65 344577788999999999999999999999999988887643 347777766777889999999998 99999999
Q ss_pred HHhhhccCchHHHHHHHcCCC
Q 003821 651 ILKLSENGELRSLEEKWFAPS 671 (793)
Q Consensus 651 i~~l~e~G~~~~~~~~w~~~~ 671 (793)
|.+|.++|.++++.++|+...
T Consensus 212 l~~l~~~g~~~~i~~k~~~~~ 232 (234)
T 3h7m_A 212 LAILRKTGQYEAIRAKWLGVL 232 (234)
T ss_dssp HHHHHHHTHHHHHHHHSTTCC
T ss_pred HHHHHHcCcHHHHHHHhcccc
Confidence 999999999999999999764
No 57
>1ii5_A SLR1257 protein; membrane protein; HET: GLU; 1.60A {Synechocystis SP} SCOP: c.94.1.1 PDB: 1iit_A 1iiw_A
Probab=99.80 E-value=4.9e-19 Score=177.82 Aligned_cols=208 Identities=21% Similarity=0.356 Sum_probs=175.1
Q ss_pred CCcEEEEecCCCCccceEEe--ccCCCCCcceeeeeeHHHHHHHHHHCCCccceeEE-------------EEeEEEecEE
Q 003821 346 AKPLIIGVPARTTFDKFVKL--ISSDNPHKIIYDGYCIELFYKVLQVLKYDLPYEFS-------------DYDAAIGDIT 410 (793)
Q Consensus 346 ~~~lrv~~~~~~~~~p~~~~--~~~~~~~~~~~~G~~~dll~~ia~~ln~~~~~~~~-------------~~Di~~~~~~ 410 (793)
.++|+||+.. ++||.+. +++ + ++.|+++|+++.+++++|++++++.. ++|++++++.
T Consensus 3 ~~~l~v~~~~---~~P~~~~~~~~~----g-~~~G~~~dl~~~i~~~~g~~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~ 74 (233)
T 1ii5_A 3 AMALKVGVVG---NPPFVFYGEGKN----A-AFTGISLDVWRAVAESQKWNSEYVRQNSISAGITAVAEGELDILIGPIS 74 (233)
T ss_dssp SCCEEEEECC---CTTTCEEC----------CEESHHHHHHHHHHHHHTCCEEEEECSCHHHHHHHHHTTSCSEEEEEEE
T ss_pred CceEEEEecC---CCCeEEEecCCC----C-CEEEEeHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHCCCcCEEEeeee
Confidence 3679999953 7888887 443 3 89999999999999999999544443 9999988899
Q ss_pred Eecccc--cceeecccccccceEEEEecCCCCCCcEEecCCChhHHHHHHHHHHHHHHHHHhhhcccCCCCCCCccccch
Q 003821 411 ILVNRT--RFVEFSQPYTESGLSMVVPAKAEQSPWIFIKPFTWGMWIVTGAILIYTMSVVWFLEHRWNPEFNGPWNIQIG 488 (793)
Q Consensus 411 ~t~~R~--~~~dfs~p~~~~~~~~~v~~~~~~~~~~~l~PF~~~vWl~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (793)
.+++|. +.++||.||+..+.++++++..+.
T Consensus 75 ~~~~r~~~~~~~~s~p~~~~~~~~~~~~~~~~------------------------------------------------ 106 (233)
T 1ii5_A 75 VTPERAAIEGITFTQPYFSSGIGLLIPGTATP------------------------------------------------ 106 (233)
T ss_dssp CCHHHHTSTTEEECCCCEEEEEEEEEEGGGTT------------------------------------------------
T ss_pred cCccccccceeEEccceeecCeEEEEECCCCC------------------------------------------------
Confidence 999999 999999999999999999887642
Q ss_pred hHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHhhhheeeeeccCCCCCCChHHhhhCCCcccccCchHHH
Q 003821 489 TALWFTFSSLFFAHRERIYSNLTRLVVVVWLFVVLILNSSYTASLSSMLTVQRLKPNVTDIGWLKASNLNVGFDGDSFVR 568 (793)
Q Consensus 489 ~~~~~~~~~l~~~~~~~~~s~s~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~~~~~~g~~~~~~~~ 568 (793)
.|++++||. |.++|+..++...
T Consensus 107 --------------------------------------------------------~i~~~~dL~--g~~v~~~~g~~~~ 128 (233)
T 1ii5_A 107 --------------------------------------------------------LFRSVGDLK--NKEVAVVRDTTAV 128 (233)
T ss_dssp --------------------------------------------------------TCSSGGGGT--TCEEEEETTSHHH
T ss_pred --------------------------------------------------------CCCCHHHhC--CCeEEEECCccHH
Confidence 489999998 8999998888777
Q ss_pred HHHHhhcCCCCccccccCCHHHHHHHhhcCceEEEEechhhHHHHHhccC-CceEEeCccccccceEEEecCCCcChHHH
Q 003821 569 NYLENVLGFKPENILKVDHEYKYITDFESNRIAAAFLELSYERAFLSQHC-KEYTATIPTYRFGGFAFVFQKGSPLAADF 647 (793)
Q Consensus 569 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~c-~~~~~~~~~~~~~~~~~~~~k~spl~~~i 647 (793)
.++.+. ..++..+.+..+++++|.+|++|+++.+...+.+++++.. ..+.+++..+...+++++++|++|+.+.+
T Consensus 129 ~~l~~~----~~~~~~~~~~~~~~~~l~~g~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~ 204 (233)
T 1ii5_A 129 DWANFY----QADVRETNNLTAAITLLQKKQVEAVMFDRPALIYYTRQNPNLNLEVTEIRVSLEPYGFVLKENSPLQKTI 204 (233)
T ss_dssp HHHHHT----TCEEEEESSHHHHHHHHHTTSCSEEEEEHHHHHHHHHHCGGGCEEECSCCSEEEEEEEEEETTCTTHHHH
T ss_pred HHHHHc----CCCeEEcCCHHHHHHHHHcCCccEEEeCHHHHHHHHHhCCCCcEEEeCccccccceEEEEcCCchHHHHH
Confidence 777764 3466778899999999999999999999999988887754 24777776677778999999999999999
Q ss_pred HHHHHhhhccCchHHHHHHHcCCC
Q 003821 648 SEAILKLSENGELRSLEEKWFAPS 671 (793)
Q Consensus 648 n~~i~~l~e~G~~~~~~~~w~~~~ 671 (793)
|++|.+|.++|.++++.++|+...
T Consensus 205 ~~~l~~l~~~g~~~~i~~k~~~~~ 228 (233)
T 1ii5_A 205 NVEMLNLLYSRVIAEFTERWLGPG 228 (233)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHC--
T ss_pred HHHHHHHHhCCcHHHHHHHHcCCC
Confidence 999999999999999999999764
No 58
>4dz1_A DALS D-alanine transporter; D-alanine binding, periplasmic, transport protein; 1.90A {Salmonella enterica} PDB: 3r39_A 4f3s_A
Probab=99.79 E-value=5.9e-19 Score=180.65 Aligned_cols=212 Identities=17% Similarity=0.260 Sum_probs=177.1
Q ss_pred CCcEEEEecCCCCccceEEeccCCCCCcceeeeeeHHHHHHHHHHCCCccceeEE------------EEeEEEecEEEec
Q 003821 346 AKPLIIGVPARTTFDKFVKLISSDNPHKIIYDGYCIELFYKVLQVLKYDLPYEFS------------DYDAAIGDITILV 413 (793)
Q Consensus 346 ~~~lrv~~~~~~~~~p~~~~~~~~~~~~~~~~G~~~dll~~ia~~ln~~~~~~~~------------~~Di~~~~~~~t~ 413 (793)
.++|+|++. +.|+||.+.+.+ + ++.|+++|+++.+++++|++++++.. ++|+++++++.++
T Consensus 28 ~~~l~v~~~--~~~~P~~~~~~~----g-~~~G~~~dl~~~i~~~~g~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~t~ 100 (259)
T 4dz1_A 28 GRTLNVAVS--PASPPMLFKSAD----G-KLQGIDLELFSSYCQSRHCKLNITEYAWDGMLGAVASGQADVAFSGISITD 100 (259)
T ss_dssp TCEEEEEEC--CCBTTTBEECTT----C-CEESHHHHHHHHHHHHHTCEEEEEECCHHHHHHHHHHTSSSEEEEEEECCH
T ss_pred CCeEEEEEC--CCCCCeEEECCC----C-CEEEeHHHHHHHHHHHhCCeEEEEEcCHHHHHHHHhCCCCCEEEECCcCCH
Confidence 467999984 457888888754 4 89999999999999999999444433 9999989999999
Q ss_pred ccccceeecccccccceEEEEecCCCCCCcEEecCCChhHHHHHHHHHHHHHHHHHhhhcccCCCCCCCccccchhHHHH
Q 003821 414 NRTRFVEFSQPYTESGLSMVVPAKAEQSPWIFIKPFTWGMWIVTGAILIYTMSVVWFLEHRWNPEFNGPWNIQIGTALWF 493 (793)
Q Consensus 414 ~R~~~~dfs~p~~~~~~~~~v~~~~~~~~~~~l~PF~~~vWl~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (793)
+|.+.++||.||+..+.+++++.+...
T Consensus 101 ~r~~~~~fs~p~~~~~~~~~~~~~~~~----------------------------------------------------- 127 (259)
T 4dz1_A 101 KRKKVIDFSEPYYINSFYLVSMANHKI----------------------------------------------------- 127 (259)
T ss_dssp HHHTTEEECCCSEEEEEEEEEETTSCC-----------------------------------------------------
T ss_pred HHhhccccccchhhCceEEEEEcCCCC-----------------------------------------------------
Confidence 999999999999999999999877642
Q ss_pred HHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHhhhheeeeeccCCCCCCChHHhhhCCCcccccCchHHHHHHHh
Q 003821 494 TFSSLFFAHRERIYSNLTRLVVVVWLFVVLILNSSYTASLSSMLTVQRLKPNVTDIGWLKASNLNVGFDGDSFVRNYLEN 573 (793)
Q Consensus 494 ~~~~l~~~~~~~~~s~s~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~~~~~~g~~~~~~~~~~l~~ 573 (793)
.|++++||. |.++|+..++....++.+
T Consensus 128 ---------------------------------------------------~i~~~~dL~--g~~v~v~~g~~~~~~l~~ 154 (259)
T 4dz1_A 128 ---------------------------------------------------TLNNLNELN--KYSIGYPRGMAYSDLIKN 154 (259)
T ss_dssp ---------------------------------------------------CCCSGGGGG--GSCEEEETTSTHHHHHHH
T ss_pred ---------------------------------------------------CCCCHHHhC--CCEEEEeCCcHHHHHHHH
Confidence 589999998 899999888877777766
Q ss_pred hcCC---CC-ccccccCCHHHHHHHhhcCceEEEEechhhHHHHHhccCCceEEeCccccccceEEEecCCCcChHHHHH
Q 003821 574 VLGF---KP-ENILKVDHEYKYITDFESNRIAAAFLELSYERAFLSQHCKEYTATIPTYRFGGFAFVFQKGSPLAADFSE 649 (793)
Q Consensus 574 ~~~~---~~-~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~k~spl~~~in~ 649 (793)
.... +. .++..+.+.++.+++|.+|++|+++.+...+.+++++....+..........+++++++|++++++.||+
T Consensus 155 ~~~~~g~~~~~~~~~~~~~~~~~~~l~~G~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~ln~ 234 (259)
T 4dz1_A 155 DLEPKGYYSLSKVKLYPTYNETMADLKNGNLDLAFIEEPVYFTFKNKKKMPIESRYVFKNVDQLGIAFKKGSPVRDDFNL 234 (259)
T ss_dssp HTGGGTSCCGGGCEEESSHHHHHHHHHHTSCSEEEEEHHHHHHHHHTSCCCEEEEEEEEEEEEEEEEEETTCHHHHHHHH
T ss_pred hcccccccccceeEecCCHHHHHHHHHcCCCCEEEecHHHHHHHhccCCCceEeecccCCCceEEEEEeCChHHHHHHHH
Confidence 4211 11 5677889999999999999999999999888777766543366555555677899999999999999999
Q ss_pred HHHhhhccCchHHHHHHHcCCC
Q 003821 650 AILKLSENGELRSLEEKWFAPS 671 (793)
Q Consensus 650 ~i~~l~e~G~~~~~~~~w~~~~ 671 (793)
+|.+ ..+|.++++.++|....
T Consensus 235 ~l~~-~g~~~l~~~~~~~~~~~ 255 (259)
T 4dz1_A 235 WLKE-QGPQKISGIVDSWMKHH 255 (259)
T ss_dssp HHHH-HCHHHHHHHHHHHTCC-
T ss_pred HHHh-CCCeehHHHHHHHHhhc
Confidence 9999 88999999999998764
No 59
>4eq9_A ABC transporter substrate-binding protein-amino A transport; structural genomics, niaid; HET: GSH; 1.40A {Streptococcus pneumoniae}
Probab=99.79 E-value=4.5e-19 Score=179.75 Aligned_cols=211 Identities=13% Similarity=0.192 Sum_probs=173.8
Q ss_pred CCcEEEEecCCCCccceEEeccCCCCCcceeeeeeHHHHHHHHHHCC-CccceeEE------------EEeEEEecEEEe
Q 003821 346 AKPLIIGVPARTTFDKFVKLISSDNPHKIIYDGYCIELFYKVLQVLK-YDLPYEFS------------DYDAAIGDITIL 412 (793)
Q Consensus 346 ~~~lrv~~~~~~~~~p~~~~~~~~~~~~~~~~G~~~dll~~ia~~ln-~~~~~~~~------------~~Di~~~~~~~t 412 (793)
.++|+|++.. .|+||.+. ++ + ++.|+++||++.+++++| +++++... ++|+++++++.+
T Consensus 7 ~~~l~v~~~~--~~~P~~~~-~~----g-~~~G~~~dl~~~i~~~~g~~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~~ 78 (246)
T 4eq9_A 7 KKEIIVATNG--SPRPFIYE-EN----G-ELTGYEIEVVRAIFKDSDKYDVKFEKTEWSGVFAGLDADRYNMAVNNLSYT 78 (246)
T ss_dssp CEEEEEEECC--CSTTTSEE-ET----T-EEESHHHHHHHHHHTTCSSEEEEEEECCHHHHHHHHHTTSCSEECSSCCCC
T ss_pred CCEEEEEeCC--CcCCeEEc-CC----C-CCcccHHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhCCCcCEEecccccC
Confidence 4679999853 57888884 33 3 899999999999999999 99444443 999998899999
Q ss_pred cccccceeecccccccceEEEEecCCCCCCcEEecCCChhHHHHHHHHHHHHHHHHHhhhcccCCCCCCCccccchhHHH
Q 003821 413 VNRTRFVEFSQPYTESGLSMVVPAKAEQSPWIFIKPFTWGMWIVTGAILIYTMSVVWFLEHRWNPEFNGPWNIQIGTALW 492 (793)
Q Consensus 413 ~~R~~~~dfs~p~~~~~~~~~v~~~~~~~~~~~l~PF~~~vWl~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (793)
++|.+.+.||.||+..+.++++++...
T Consensus 79 ~~r~~~~~~s~p~~~~~~~~~~~~~~~----------------------------------------------------- 105 (246)
T 4eq9_A 79 KERAEKYLYAAPIAQNPNVLVVKKDDS----------------------------------------------------- 105 (246)
T ss_dssp HHHHHHEEECCCCEECCEEEEEETTCC-----------------------------------------------------
T ss_pred hhhhhceeeccceecCceEEEEECCCC-----------------------------------------------------
Confidence 999999999999999999999988443
Q ss_pred HHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHhhhheeeeeccCCCCCCChHHhhhCCCcccccCchHHHHHHH
Q 003821 493 FTFSSLFFAHRERIYSNLTRLVVVVWLFVVLILNSSYTASLSSMLTVQRLKPNVTDIGWLKASNLNVGFDGDSFVRNYLE 572 (793)
Q Consensus 493 ~~~~~l~~~~~~~~~s~s~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~~~~~~g~~~~~~~~~~l~ 572 (793)
+|++++||. |.++|+..++....++.
T Consensus 106 ----------------------------------------------------~i~~~~dL~--g~~i~~~~g~~~~~~l~ 131 (246)
T 4eq9_A 106 ----------------------------------------------------SIKSLDDIG--GKSTEVVQATTSAKQLE 131 (246)
T ss_dssp ----------------------------------------------------SCSSGGGCT--TCEEEECTTCHHHHHHH
T ss_pred ----------------------------------------------------CCCCHHHhC--CCEEEEecCccHHHHHH
Confidence 489999998 89999988887777776
Q ss_pred h---hcCCCCcccc-ccCCHHHHHHHhhcCceEEEEechhhHHHHHhccC-CceEEeCccccccc-eEEEecCCCc-ChH
Q 003821 573 N---VLGFKPENIL-KVDHEYKYITDFESNRIAAAFLELSYERAFLSQHC-KEYTATIPTYRFGG-FAFVFQKGSP-LAA 645 (793)
Q Consensus 573 ~---~~~~~~~~~~-~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~c-~~~~~~~~~~~~~~-~~~~~~k~sp-l~~ 645 (793)
. ........+. ...+..+.+++|.+|++|+++.+...+.+++++.. ..+.++.......+ ++++++|++| +++
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~g~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~ 211 (246)
T 4eq9_A 132 AYNAEHTDNPTILNYTKADFQQIMVRLSDGQFDYKIFDKIGVETVIKNQGLDNLKVIELPSDQQPYVYPLLAQGQDELKS 211 (246)
T ss_dssp HHHHHCTTSCCEEEECCCCHHHHHHHHHTTSSSEEEEEHHHHHHHHHHHTCTTEEEEECCCSSCCEECCEEETTCHHHHH
T ss_pred HHHhhCCCcceEEEecCCCHHHHHHHHHcCCceEEEecHHHHHHHHHhCCCCCceEecCcCCCCCcEEEEEcCCCHHHHH
Confidence 6 3221122333 23588999999999999999999999999888765 34777765555554 8899999998 999
Q ss_pred HHHHHHHhhhccCchHHHHHHHcCCC
Q 003821 646 DFSEAILKLSENGELRSLEEKWFAPS 671 (793)
Q Consensus 646 ~in~~i~~l~e~G~~~~~~~~w~~~~ 671 (793)
.||++|.++.++|.++++.++|+...
T Consensus 212 ~ln~~l~~l~~~g~~~~i~~k~~~~~ 237 (246)
T 4eq9_A 212 FVDKRIKELYKDGTLEKLSKQFFGDT 237 (246)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHhCCcHHHHHHHhcCCC
Confidence 99999999999999999999999864
No 60
>3mpk_A Virulence sensor protein BVGS; venus flytrap, sensor domain, signaling protein; 2.04A {Bordetella pertussis} PDB: 3mpl_A
Probab=99.79 E-value=5.9e-19 Score=181.53 Aligned_cols=207 Identities=15% Similarity=0.235 Sum_probs=176.3
Q ss_pred CCcEEEEecCCCCccceEEeccCCCCCcceeeeeeHHHHHHHHHHCCCccceeEE-------------EEeEEEecEEEe
Q 003821 346 AKPLIIGVPARTTFDKFVKLISSDNPHKIIYDGYCIELFYKVLQVLKYDLPYEFS-------------DYDAAIGDITIL 412 (793)
Q Consensus 346 ~~~lrv~~~~~~~~~p~~~~~~~~~~~~~~~~G~~~dll~~ia~~ln~~~~~~~~-------------~~Di~~~~~~~t 412 (793)
.++||||+. +.|+||.+.+++ + ++.|+++||++.+++++|+++++... ++|++ ++++.+
T Consensus 31 ~~~l~v~~~--~~~~P~~~~~~~----g-~~~G~~~dl~~~i~~~lg~~~~~~~~~~~~~~~~~l~~G~~D~~-~~~~~t 102 (267)
T 3mpk_A 31 HPVVKVAVL--NLFAPFTLFRTD----E-QFGGISAAVLQLLQLRTGLDFEIIGVDTVEELIAKLRSGEADMA-GALFVN 102 (267)
T ss_dssp CSEEEEEEE--TEETTTEECCTT----C-CCBSHHHHHHHHHHHHHCCEEEEEEESSHHHHHHHHHHTSCSEE-EEEECC
T ss_pred CCcEEEEeC--CCCCCeEEECCC----C-cEeeeHHHHHHHHHHHHCCeEEEEecCCHHHHHHHHHCCCccEE-ecccCC
Confidence 478999994 448899988765 4 89999999999999999999666543 99997 489999
Q ss_pred cccccceeecccccccceEEEEecCCCCCCcEEecCCChhHHHHHHHHHHHHHHHHHhhhcccCCCCCCCccccchhHHH
Q 003821 413 VNRTRFVEFSQPYTESGLSMVVPAKAEQSPWIFIKPFTWGMWIVTGAILIYTMSVVWFLEHRWNPEFNGPWNIQIGTALW 492 (793)
Q Consensus 413 ~~R~~~~dfs~p~~~~~~~~~v~~~~~~~~~~~l~PF~~~vWl~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (793)
++|.+.+.||.||+..+.++++++...
T Consensus 103 ~~r~~~~~fs~p~~~~~~~l~~~~~~~----------------------------------------------------- 129 (267)
T 3mpk_A 103 SARESFLSFSRPYVRNGMVIVTRQDPD----------------------------------------------------- 129 (267)
T ss_dssp GGGTTTEEECSCSEEECEEEEEESSTT-----------------------------------------------------
T ss_pred hhhhcceEechhhccCceEEEEECCCC-----------------------------------------------------
Confidence 999999999999999999999988754
Q ss_pred HHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHhhhheeeeeccCCCCCCChHHhhhCCCcccccCchHHHHHHH
Q 003821 493 FTFSSLFFAHRERIYSNLTRLVVVVWLFVVLILNSSYTASLSSMLTVQRLKPNVTDIGWLKASNLNVGFDGDSFVRNYLE 572 (793)
Q Consensus 493 ~~~~~l~~~~~~~~~s~s~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~~~~~~g~~~~~~~~~~l~ 572 (793)
.|++++||. |.++|+..++....++.
T Consensus 130 ----------------------------------------------------~i~~~~dL~--g~~i~v~~g~~~~~~l~ 155 (267)
T 3mpk_A 130 ----------------------------------------------------APVDADHLD--GRTVALVRNSAAIPLLQ 155 (267)
T ss_dssp ----------------------------------------------------SCSSGGGCT--TCEEEEETTCTHHHHHH
T ss_pred ----------------------------------------------------CCCCHHHHC--CCEEEEeCCchhHHHHH
Confidence 489999998 89999988888888887
Q ss_pred hhcCCCCccccccCCHHHHHHHhhcCceEEEEechhhHHHHHhccC-CceEEeCccc-cccceEEEecCCCc-ChHHHHH
Q 003821 573 NVLGFKPENILKVDHEYKYITDFESNRIAAAFLELSYERAFLSQHC-KEYTATIPTY-RFGGFAFVFQKGSP-LAADFSE 649 (793)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~c-~~~~~~~~~~-~~~~~~~~~~k~sp-l~~~in~ 649 (793)
+. .+..++..+.+.++++++|.+|++|+++.+...+.+++++.. +.+.+.+... ...+++++++|++| +.+.||+
T Consensus 156 ~~--~~~~~~~~~~~~~~~l~~L~~GrvDa~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~~~~l~~~ln~ 233 (267)
T 3mpk_A 156 RR--YPQAKVVTADNPSEAMLMVANGQADAVVQTQISASYYVNRYFAGKLRIASALDLPPAEIALATTRGQTELMSILNK 233 (267)
T ss_dssp HH--CTTSEEEEESSHHHHHHHHHHTSCSEEEEEHHHHHHHHHHHCTTTEEEEEECSSCCEEEEEEEETTCHHHHHHHHH
T ss_pred Hh--CCCcEEEEeCCHHHHHHHHHcCCCCEEEecHHHHHHHHHhcCCCceEEEeccCCCceeEEEEEcCCCHHHHHHHHH
Confidence 76 456778889999999999999999999999999998888743 3466665433 35678999999998 9999999
Q ss_pred HHHhhhccCchHHHHHHHcCC
Q 003821 650 AILKLSENGELRSLEEKWFAP 670 (793)
Q Consensus 650 ~i~~l~e~G~~~~~~~~w~~~ 670 (793)
+|.+|.++| ++++.++|+..
T Consensus 234 ~l~~l~~~~-~~~i~~kw~~~ 253 (267)
T 3mpk_A 234 ALYSISNDE-LASIISRWRGS 253 (267)
T ss_dssp HHHTSCHHH-HHHHHHTTC--
T ss_pred HHHhCCHHH-HHHHHHhhccC
Confidence 999999996 89999999986
No 61
>2y7i_A STM4351; arginine-binding protein; HET: ARG; 1.90A {Salmonella enterica subsp}
Probab=99.78 E-value=1.3e-18 Score=174.31 Aligned_cols=205 Identities=21% Similarity=0.347 Sum_probs=174.6
Q ss_pred CCcEEEEecCCCCccceEEeccCCCCCcceeeeeeHHHHHHHHHHCCCccceeEE------------EEeEEEecEEEec
Q 003821 346 AKPLIIGVPARTTFDKFVKLISSDNPHKIIYDGYCIELFYKVLQVLKYDLPYEFS------------DYDAAIGDITILV 413 (793)
Q Consensus 346 ~~~lrv~~~~~~~~~p~~~~~~~~~~~~~~~~G~~~dll~~ia~~ln~~~~~~~~------------~~Di~~~~~~~t~ 413 (793)
.++|||++. +.|+||.+.+++ + ++.|+++|+++.+++++|+++++... ++|++++++..++
T Consensus 5 a~~l~v~~~--~~~~P~~~~~~~----g-~~~G~~~dl~~~i~~~~g~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~~~ 77 (229)
T 2y7i_A 5 ARTLHFGTS--ATYAPYEFVDAD----N-KIVGFDIDVANAVCKEMQAECSFTNQSFDSLIPSLRFKKFDAVIAGMDMTP 77 (229)
T ss_dssp CCEEEEEEC--CCBTTTBEECTT----S-CEESHHHHHHHHHHHHTTCEEEEEECCGGGHHHHHHTTSCSEECSSCBCCH
T ss_pred CCcEEEEeC--CCcCCceEECCC----C-CCcceeHHHHHHHHHHhCCeEEEEEcCHHHHHHHHhCCCceEEEecCccCH
Confidence 567999984 468888887654 4 79999999999999999999544443 9999988889999
Q ss_pred ccccceeeccccccc-ceEEEEecCCCCCCcEEecCCChhHHHHHHHHHHHHHHHHHhhhcccCCCCCCCccccchhHHH
Q 003821 414 NRTRFVEFSQPYTES-GLSMVVPAKAEQSPWIFIKPFTWGMWIVTGAILIYTMSVVWFLEHRWNPEFNGPWNIQIGTALW 492 (793)
Q Consensus 414 ~R~~~~dfs~p~~~~-~~~~~v~~~~~~~~~~~l~PF~~~vWl~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (793)
+|.+.+.|+.||+.. +.++++++..
T Consensus 78 ~r~~~~~~s~p~~~~~~~~~~~~~~~------------------------------------------------------ 103 (229)
T 2y7i_A 78 KREQQVSFSQPYYEGLSAVVVTRKGA------------------------------------------------------ 103 (229)
T ss_dssp HHHTTSEECSCSBCCCCEEEEEETTS------------------------------------------------------
T ss_pred HHhcceeeccccccCCcEEEEEeCCC------------------------------------------------------
Confidence 999999999999999 9998887753
Q ss_pred HHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHhhhheeeeeccCCCCCCChHHhhhCCCcccccCchHHHHHHH
Q 003821 493 FTFSSLFFAHRERIYSNLTRLVVVVWLFVVLILNSSYTASLSSMLTVQRLKPNVTDIGWLKASNLNVGFDGDSFVRNYLE 572 (793)
Q Consensus 493 ~~~~~l~~~~~~~~~s~s~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~~~~~~g~~~~~~~~~~l~ 572 (793)
+++++||. |.++|+..++....++.
T Consensus 104 -----------------------------------------------------~~~~~dL~--g~~v~~~~g~~~~~~l~ 128 (229)
T 2y7i_A 104 -----------------------------------------------------YHTFADLK--GKKVGLENGTTHQRYLQ 128 (229)
T ss_dssp -----------------------------------------------------CCSTGGGT--TCEEEEETTSHHHHHHH
T ss_pred -----------------------------------------------------CCCHHHHC--CCEEEEecCCcHHHHHH
Confidence 57889997 89999988888888887
Q ss_pred hhcCCCCccccccCCHHHHHHHhhcCceEEEEechhhHHHHHhccCCceEEeCcccc-----ccceEEEecCCCc-ChHH
Q 003821 573 NVLGFKPENILKVDHEYKYITDFESNRIAAAFLELSYERAFLSQHCKEYTATIPTYR-----FGGFAFVFQKGSP-LAAD 646 (793)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~c~~~~~~~~~~~-----~~~~~~~~~k~sp-l~~~ 646 (793)
+. .+..++..+.+..+.+++|.+|++|+++.+...+.++++++.+ +.+++..+. ..+++++++|++| +++.
T Consensus 129 ~~--~~~~~~~~~~~~~~~~~~l~~grvDa~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 205 (229)
T 2y7i_A 129 DK--QQAITPVAYDSYLNAFTDLKNNRLEGVFGDVAAIGKWLKNNPD-YAIMDERASDPDYYGKGLGIAVRKDNDALLQE 205 (229)
T ss_dssp HH--CTTSEEEEESCHHHHHHHHHTTSCSEEEEEHHHHHHHHTTCTT-EEECSCCBCCTTTSCCCBCCEECTTCHHHHHH
T ss_pred Hh--CCCCeEEecCCHHHHHHHHHcCCcCEEEechHHHHHHHHhCCC-eEEeccccccccccccceEEEEeCCCHHHHHH
Confidence 65 3455777889999999999999999999999999998888764 777765442 2378999999988 9999
Q ss_pred HHHHHHhhhccCchHHHHHHHcC
Q 003821 647 FSEAILKLSENGELRSLEEKWFA 669 (793)
Q Consensus 647 in~~i~~l~e~G~~~~~~~~w~~ 669 (793)
+|++|.++.++|.++++.++|+.
T Consensus 206 l~~~l~~l~~~g~~~~i~~k~~~ 228 (229)
T 2y7i_A 206 INAALDKVKASPEYAQMQEKWFT 228 (229)
T ss_dssp HHHHHHHHHTSHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCChHHHHHHHHcC
Confidence 99999999999999999999985
No 62
>1lst_A Lysine, arginine, ornithine-binding protein; amino-acid binding protein; HET: LYS; 1.80A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 2lao_A 1lag_E* 1lah_E 1laf_E 1hsl_A* 1hpb_P*
Probab=99.78 E-value=8.3e-19 Score=176.99 Aligned_cols=212 Identities=21% Similarity=0.291 Sum_probs=173.0
Q ss_pred CCcEEEEecCCCCccceEEeccCCCCCcceeeeeeHHHHHHHHHHCCCccceeEE------------EEeEEEecEEEec
Q 003821 346 AKPLIIGVPARTTFDKFVKLISSDNPHKIIYDGYCIELFYKVLQVLKYDLPYEFS------------DYDAAIGDITILV 413 (793)
Q Consensus 346 ~~~lrv~~~~~~~~~p~~~~~~~~~~~~~~~~G~~~dll~~ia~~ln~~~~~~~~------------~~Di~~~~~~~t~ 413 (793)
.++||||+ .+.|+||.+.+++ + ++.|+++|+++.+++++|++++++.. ++|+++++++.++
T Consensus 3 ~~~l~v~~--~~~~~P~~~~~~~----g-~~~G~~~dl~~~i~~~~g~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~t~ 75 (239)
T 1lst_A 3 PQTVRIGT--DTTYAPFSSKDAK----G-EFIGFDIDLGNEMCKRMQVKCTWVASDFDALIPSLKAKKIDAIISSLSITD 75 (239)
T ss_dssp CSEEEEEE--CSCBTTTBEECTT----C-CEESHHHHHHHHHHHHHTCEEEEEECCGGGHHHHHHTTSCSEECSSCBCCH
T ss_pred cceEEEEE--CCCcCCeeEECCC----C-CEeeEHHHHHHHHHHHHCCeEEEEeCCHHHHHHHHhCCCCCEEEECcCcCH
Confidence 36799998 3458888887655 4 79999999999999999999444433 9999988899999
Q ss_pred ccccceeecccccccceEEEEecCCCCCCcEEecCCChhHHHHHHHHHHHHHHHHHhhhcccCCCCCCCccccchhHHHH
Q 003821 414 NRTRFVEFSQPYTESGLSMVVPAKAEQSPWIFIKPFTWGMWIVTGAILIYTMSVVWFLEHRWNPEFNGPWNIQIGTALWF 493 (793)
Q Consensus 414 ~R~~~~dfs~p~~~~~~~~~v~~~~~~~~~~~l~PF~~~vWl~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (793)
+|.+.++||.||+..+.++++++..+.
T Consensus 76 ~r~~~~~~s~p~~~~~~~l~~~~~~~~----------------------------------------------------- 102 (239)
T 1lst_A 76 KRQQEIAFSDKLYAADSRLIAAKGSPI----------------------------------------------------- 102 (239)
T ss_dssp HHHHHCEECSCSBCCCEEEEEETTCCC-----------------------------------------------------
T ss_pred HHhhceeecccceeCceEEEEeCCCCC-----------------------------------------------------
Confidence 999999999999999999999987642
Q ss_pred HHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHhhhheeeeeccCCCCCCChHHhhhCCCcccccCchHHHHHHHh
Q 003821 494 TFSSLFFAHRERIYSNLTRLVVVVWLFVVLILNSSYTASLSSMLTVQRLKPNVTDIGWLKASNLNVGFDGDSFVRNYLEN 573 (793)
Q Consensus 494 ~~~~l~~~~~~~~~s~s~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~~~~~~g~~~~~~~~~~l~~ 573 (793)
..+++||. |.++|+..++....++.+
T Consensus 103 ----------------------------------------------------~~~~~dL~--g~~v~~~~g~~~~~~l~~ 128 (239)
T 1lst_A 103 ----------------------------------------------------QPTLESLK--GKHVGVLQGSTQEAYAND 128 (239)
T ss_dssp ----------------------------------------------------CSSHHHHT--TCEEEEETTSHHHHHHHH
T ss_pred ----------------------------------------------------CCCHHHhC--CCEEEEEcCccHHHHHHH
Confidence 25899998 889999888887777776
Q ss_pred hcCCCCccccccCCHHHHHHHhhcCceEEEEechhhHHH-HHhcc-CCceEEeCccccc-----cceEEEecCCCc-ChH
Q 003821 574 VLGFKPENILKVDHEYKYITDFESNRIAAAFLELSYERA-FLSQH-CKEYTATIPTYRF-----GGFAFVFQKGSP-LAA 645 (793)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~-~~~~~-c~~~~~~~~~~~~-----~~~~~~~~k~sp-l~~ 645 (793)
.......++..+.+..+.+++|.+|++|+++.+...+.+ ++.+. ...+.+++..+.. .+++++++|++| +.+
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~l~~G~vDa~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~ 208 (239)
T 1lst_A 129 NWRTKGVDVVAYANQDLIYSDLTAGRLDAALQDEVAASEGFLKQPAGKEYAFAGPSVKDKKYFGDGTGVGLRKDDTELKA 208 (239)
T ss_dssp HTGGGTCEEEEESSHHHHHHHHHTTSCSEEEEEHHHHHHHTTTSGGGTTEEECSSCBCCHHHHCSSBCCEECTTCHHHHH
T ss_pred hcccCCCeEEEcCCHHHHHHHHHcCCCCEEEeCcHHHHHHHHhccCCCceEEeccccccccccCcceEEEEeCCCHHHHH
Confidence 532234566778999999999999999999999887754 44443 2336666644432 268999999998 999
Q ss_pred HHHHHHHhhhccCchHHHHHHHcCCC
Q 003821 646 DFSEAILKLSENGELRSLEEKWFAPS 671 (793)
Q Consensus 646 ~in~~i~~l~e~G~~~~~~~~w~~~~ 671 (793)
.+|++|.++.++|.++++.++|+...
T Consensus 209 ~~~~~l~~l~~~G~~~~i~~k~~~~~ 234 (239)
T 1lst_A 209 AFDKALTELRQDGTYDKMAKKYFDFN 234 (239)
T ss_dssp HHHHHHHHHHHTTHHHHHHHTTCSSC
T ss_pred HHHHHHHHHHHCccHHHHHHHHcCCC
Confidence 99999999999999999999999864
No 63
>2iee_A ORF2, probable ABC transporter extracellular-binding protein YCKB; SR574, NESG, X-RAY, structural genomics, PSI-2; 2.20A {Bacillus subtilis}
Probab=99.76 E-value=1.2e-18 Score=179.69 Aligned_cols=210 Identities=19% Similarity=0.227 Sum_probs=170.8
Q ss_pred CCCcEEEEecCCCCccceEEeccCCCCCcceeeeeeHHHHHHHHHHCCCccceeEE------------EEeEEEecEEEe
Q 003821 345 DAKPLIIGVPARTTFDKFVKLISSDNPHKIIYDGYCIELFYKVLQVLKYDLPYEFS------------DYDAAIGDITIL 412 (793)
Q Consensus 345 ~~~~lrv~~~~~~~~~p~~~~~~~~~~~~~~~~G~~~dll~~ia~~ln~~~~~~~~------------~~Di~~~~~~~t 412 (793)
..++|+|++. +.|+||.+.+++.. ..++.|+++|+++++++++|++++++.. ++|+++++++.|
T Consensus 19 ~~~~l~v~~~--~~~pP~~~~~~~~~--~g~~~G~~~dl~~~i~~~~g~~v~~~~~~~~~~~~~l~~G~~D~~~~~~~~t 94 (271)
T 2iee_A 19 DKGKIVVATS--GTLYPTSYHDTDSG--SDKLTGYEVEVVREAAKRLGLKVEFKEMGIDGMLTAVNSGQVDAAANDIDVT 94 (271)
T ss_dssp HHTEEEEEEC--SCBTTTBEEETTTT--CCEEECHHHHHHHHHHHHTTCEEEEEECCSTTHHHHHHHTSSSEECSSCBCC
T ss_pred cCCeEEEEEC--CCCCCeeEeCCCCC--CCCceeeHHHHHHHHHHHcCCeEEEEECCHHHHHHHHHCCCcCEEEeCCcCC
Confidence 3578999985 46888888754310 1389999999999999999999544444 999998888899
Q ss_pred cccccceeecccccccceEEEEecCCCCCCcEEecCCChhHHHHHHHHHHHHHHHHHhhhcccCCCCCCCccccchhHHH
Q 003821 413 VNRTRFVEFSQPYTESGLSMVVPAKAEQSPWIFIKPFTWGMWIVTGAILIYTMSVVWFLEHRWNPEFNGPWNIQIGTALW 492 (793)
Q Consensus 413 ~~R~~~~dfs~p~~~~~~~~~v~~~~~~~~~~~l~PF~~~vWl~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (793)
++|.+.++||.||+..+.++++++..+.
T Consensus 95 ~~r~~~~~fs~p~~~~~~~l~~~~~~~~---------------------------------------------------- 122 (271)
T 2iee_A 95 KDREEKFAFSTPYKYSYGTAIVRKDDLS---------------------------------------------------- 122 (271)
T ss_dssp HHHHTTEEECCCSEEEEEEEEECTTTGG----------------------------------------------------
T ss_pred hhhccceEEeecceeCCeEEEEECCCCC----------------------------------------------------
Confidence 9999999999999999999999877631
Q ss_pred HHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHhhhheeeeeccCCCCCCChHHhhhCCCcccccCchHHHHHHH
Q 003821 493 FTFSSLFFAHRERIYSNLTRLVVVVWLFVVLILNSSYTASLSSMLTVQRLKPNVTDIGWLKASNLNVGFDGDSFVRNYLE 572 (793)
Q Consensus 493 ~~~~~l~~~~~~~~~s~s~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~~~~~~g~~~~~~~~~~l~ 572 (793)
.|++++||. |.++|+..++....+++
T Consensus 123 ----------------------------------------------------~i~~~~dL~--g~~i~v~~g~~~~~~l~ 148 (271)
T 2iee_A 123 ----------------------------------------------------GIKTLKDLK--GKKAAGAATTVYMEVAR 148 (271)
T ss_dssp ----------------------------------------------------GCSSGGGGT--TCEEESCTTSHHHHHHH
T ss_pred ----------------------------------------------------CCCCHHHhC--CCEEEEeCCccHHHHHH
Confidence 489999998 89999988887777776
Q ss_pred hhcCCCCccccccCCHHHH--HHHhhcCceEEEEechhhHHHHHh-ccC-CceEEe-CccccccceEEEecCCCc-ChHH
Q 003821 573 NVLGFKPENILKVDHEYKY--ITDFESNRIAAAFLELSYERAFLS-QHC-KEYTAT-IPTYRFGGFAFVFQKGSP-LAAD 646 (793)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~--~~~l~~g~~~a~~~~~~~~~~~~~-~~c-~~~~~~-~~~~~~~~~~~~~~k~sp-l~~~ 646 (793)
+. + .++..+.+..+. +++|.+|++| ++.+...+.+++. ++. ..+.++ +..+...+++++++|++| +++.
T Consensus 149 ~~-~---~~~~~~~~~~~~~l~~~L~~GrvD-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~ 223 (271)
T 2iee_A 149 KY-G---AKEVIYDNATNEQYLKDVANGRTD-VILNDYYLQTLALAAFPDLNITIHPDIKYMPNKQALVMKKSNAALQKK 223 (271)
T ss_dssp HT-T---CEEEECSSCCHHHHHHHHHHTSSC-EEEEEHHHHHHHHHHCTTSSCEECSSCCEEEEEECCEEETTCHHHHHH
T ss_pred Hc-C---CceEEeCChhhHHHHHHHHcCCcc-EEeccHHHHHHHHHhCCCCceEEecCCCcccceEEEEEcCCCHHHHHH
Confidence 53 2 267778888888 9999999999 6666666655554 433 346666 556667788999999988 9999
Q ss_pred HHHHHHhhhccCchHHHHHHHcC
Q 003821 647 FSEAILKLSENGELRSLEEKWFA 669 (793)
Q Consensus 647 in~~i~~l~e~G~~~~~~~~w~~ 669 (793)
||++|.+|.++|.++++.++|+.
T Consensus 224 ln~al~~l~~~G~~~~i~~k~~~ 246 (271)
T 2iee_A 224 MNEALKEMSKDGSLTKLSKQFFN 246 (271)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCHHHHHHHhCC
Confidence 99999999999999999999998
No 64
>2q88_A EHUB, putative ABC transporter amino acid-binding prote; substrate-binding protein, compatible solues, ABC-transporte osmoprotection; HET: 4CS; 1.90A {Sinorhizobium meliloti} PDB: 2q89_A*
Probab=99.75 E-value=5.2e-18 Score=173.28 Aligned_cols=211 Identities=15% Similarity=0.154 Sum_probs=175.5
Q ss_pred CCcEEEEecCCCCccceEEeccCCCCCcceeeeeeHHHHHHHHHHCCCc-cceeEE------------EEeEEEecEEEe
Q 003821 346 AKPLIIGVPARTTFDKFVKLISSDNPHKIIYDGYCIELFYKVLQVLKYD-LPYEFS------------DYDAAIGDITIL 412 (793)
Q Consensus 346 ~~~lrv~~~~~~~~~p~~~~~~~~~~~~~~~~G~~~dll~~ia~~ln~~-~~~~~~------------~~Di~~~~~~~t 412 (793)
.++|+||+. .|+||.+.+++ + ++.|+++||++.+++++|++ +++... ++|++++++..+
T Consensus 12 ~~~l~v~~~---~~~P~~~~~~~----g-~~~G~~~dl~~~i~~~~g~~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~t 83 (257)
T 2q88_A 12 QGFARIAIA---NEPPFTAVGAD----G-KVSGAAPDVAREIFKRLGVADVVASISEYGAMIPGLQAGRHDAITAGLFMK 83 (257)
T ss_dssp HTEEEEEEC---CCTTTCEECTT----C-CEESHHHHHHHHHHHHTTCCEEEEEECCGGGHHHHHHTTSCSEECSCCBCC
T ss_pred CCeEEEEcC---CCCCeeEECCC----C-CcccccHHHHHHHHHHcCCCeeeEEeCCHHHHHHHHHCCCcCEEEecccCC
Confidence 367999985 47888887654 4 89999999999999999998 766655 999998889999
Q ss_pred cccccceeecccccccceEEEEecCCCCCCcEEecCCChhHHHHHHHHHHHHHHHHHhhhcccCCCCCCCccccchhHHH
Q 003821 413 VNRTRFVEFSQPYTESGLSMVVPAKAEQSPWIFIKPFTWGMWIVTGAILIYTMSVVWFLEHRWNPEFNGPWNIQIGTALW 492 (793)
Q Consensus 413 ~~R~~~~dfs~p~~~~~~~~~v~~~~~~~~~~~l~PF~~~vWl~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (793)
++|.+.++||.||+..+.++++++..+.
T Consensus 84 ~~r~~~~~~s~p~~~~~~~~~~~~~~~~---------------------------------------------------- 111 (257)
T 2q88_A 84 PERCAAVAYSQPILCDAEAFALKKGNPL---------------------------------------------------- 111 (257)
T ss_dssp HHHHTTSEECSCCCEECEEEEEETTCTT----------------------------------------------------
T ss_pred HHHHhccccccchhcCceEEEEECCCcc----------------------------------------------------
Confidence 9999999999999999999999887642
Q ss_pred HHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHhhhheeeeeccCCCCCCChHHhhhC-CCcccccCchHHHHHH
Q 003821 493 FTFSSLFFAHRERIYSNLTRLVVVVWLFVVLILNSSYTASLSSMLTVQRLKPNVTDIGWLKAS-NLNVGFDGDSFVRNYL 571 (793)
Q Consensus 493 ~~~~~l~~~~~~~~~s~s~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~~-~~~~g~~~~~~~~~~l 571 (793)
.|++++||... |.++|+..++....++
T Consensus 112 ----------------------------------------------------~i~~~~dL~~~~g~~i~~~~g~~~~~~l 139 (257)
T 2q88_A 112 ----------------------------------------------------GLKSYKDIADNPDAKIGAPGGGTEEKLA 139 (257)
T ss_dssp ----------------------------------------------------CCCBHHHHHHCTTCCEEECTTSHHHHHH
T ss_pred ----------------------------------------------------CCCCHHHHhccCCceEEEECCcccHHHH
Confidence 48999999855 7899998888877777
Q ss_pred HhhcCCCCccccccCCHHHHHHHhhcCceEEEEechhhHHHHHhccC-CceEEeCcccc--ccceEEEecCCCc-ChHHH
Q 003821 572 ENVLGFKPENILKVDHEYKYITDFESNRIAAAFLELSYERAFLSQHC-KEYTATIPTYR--FGGFAFVFQKGSP-LAADF 647 (793)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~c-~~~~~~~~~~~--~~~~~~~~~k~sp-l~~~i 647 (793)
.+. +.+..++..+.+..+.+++|.+|++|+++.+...+.+++++.. ..+....+... ..+++++++|+++ +.+.|
T Consensus 140 ~~~-~~~~~~~~~~~~~~~~~~~l~~grvDa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~l 218 (257)
T 2q88_A 140 LEA-GVPRDRVIVVPDGQSGLKMLQDGRIDVYSLPVLSINDLVSKANDPNVEVLAPVEGAPVYCDGAAFRKGDEALRDAF 218 (257)
T ss_dssp HHT-TCCGGGEEECSSHHHHHHHHHHTSCSEEEEEHHHHHHHHHHHCCTTEEEECSCBTCCCEEBCCEECGGGHHHHHHH
T ss_pred Hhc-CCCCceEEEcCCHHHHHHHHHcCCCcEEEcCHHHHHHHHHhCCCcceeeecccCCccccceEEEEcCCCHHHHHHH
Confidence 654 3445577788999999999999999999999999998887754 34555443221 2457789999976 99999
Q ss_pred HHHHHhhhccCchHHHHHHHcC
Q 003821 648 SEAILKLSENGELRSLEEKWFA 669 (793)
Q Consensus 648 n~~i~~l~e~G~~~~~~~~w~~ 669 (793)
|++|.++.++|.++++.++|.-
T Consensus 219 ~~~l~~~~~~g~~~~i~~k~~~ 240 (257)
T 2q88_A 219 DVELAKLKESGEFAKIIEPYGF 240 (257)
T ss_dssp HHHHHHHHHHTHHHHHHGGGTC
T ss_pred HHHHHHHHhCCcHHHHHHHhCC
Confidence 9999999999999999999943
No 65
>2pvu_A ARTJ; basic amino acid binding protein, ABC transport system, THER bacterium, transport protein; HET: LYS; 1.79A {Geobacillus stearothermophilus} PDB: 2q2a_A* 2q2c_A*
Probab=99.75 E-value=1e-17 Score=172.70 Aligned_cols=210 Identities=20% Similarity=0.319 Sum_probs=176.2
Q ss_pred CCCcEEEEecCCCCccceEEeccCCCCCcceeeeeeHHHHHHHHHHCCCccceeEE------------EEeEEEecEEEe
Q 003821 345 DAKPLIIGVPARTTFDKFVKLISSDNPHKIIYDGYCIELFYKVLQVLKYDLPYEFS------------DYDAAIGDITIL 412 (793)
Q Consensus 345 ~~~~lrv~~~~~~~~~p~~~~~~~~~~~~~~~~G~~~dll~~ia~~ln~~~~~~~~------------~~Di~~~~~~~t 412 (793)
..++|||++. +.|+||.+.++ + ++.|+++|+++.+++++|++++++.. ++|++++++..+
T Consensus 40 ~~~~l~v~~~--~~~~P~~~~~~-----g-~~~G~~~dl~~~i~~~~g~~v~~~~~~~~~~~~~l~~G~~D~~~~~~~~~ 111 (272)
T 2pvu_A 40 TKKKVVVGTD--AAFAPFEYMQK-----G-KIVGFDVDLLDAVMKAAGLDYELKNIGWDPLFASLQSKEVDMGISGITIT 111 (272)
T ss_dssp CCCCEEEEEC--CCBTTTBEEET-----T-EEESHHHHHHHHHHHHHTCCEEEEECCHHHHHHHHHHTSSSEECSSCBCC
T ss_pred cCCeEEEEEC--CCCCCeEEecC-----C-eEEEEHHHHHHHHHHHhCCceEEEECCHHHHHHHHhCCCCCEEEeCCcCC
Confidence 3578999995 45788887743 3 89999999999999999999544433 999998888899
Q ss_pred cccccceeecccccccceEEEEecCCCCCCcEEecCCChhHHHHHHHHHHHHHHHHHhhhcccCCCCCCCccccchhHHH
Q 003821 413 VNRTRFVEFSQPYTESGLSMVVPAKAEQSPWIFIKPFTWGMWIVTGAILIYTMSVVWFLEHRWNPEFNGPWNIQIGTALW 492 (793)
Q Consensus 413 ~~R~~~~dfs~p~~~~~~~~~v~~~~~~~~~~~l~PF~~~vWl~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (793)
++|.+.+.|+.||+..+.++++++..
T Consensus 112 ~~r~~~~~~s~p~~~~~~~l~~~~~~------------------------------------------------------ 137 (272)
T 2pvu_A 112 DERKQSYDFSDPYFEATQVILVKQGS------------------------------------------------------ 137 (272)
T ss_dssp HHHHTTEEECSCCEEECEEEEEETTC------------------------------------------------------
T ss_pred HHHHhcCccchhhhccceEEEEECCC------------------------------------------------------
Confidence 99999999999999999999998765
Q ss_pred HHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHhhhheeeeeccCCCCCCChHHhhhCCCcccccCchHHHHHHH
Q 003821 493 FTFSSLFFAHRERIYSNLTRLVVVVWLFVVLILNSSYTASLSSMLTVQRLKPNVTDIGWLKASNLNVGFDGDSFVRNYLE 572 (793)
Q Consensus 493 ~~~~~l~~~~~~~~~s~s~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~~~~~~g~~~~~~~~~~l~ 572 (793)
+|++++||. |.++|+..++....++.
T Consensus 138 ----------------------------------------------------~i~~~~dL~--g~~i~~~~g~~~~~~l~ 163 (272)
T 2pvu_A 138 ----------------------------------------------------PVKNALDLK--GKTIGVQNATTGQEAAE 163 (272)
T ss_dssp ----------------------------------------------------CCCSGGGGT--TSCEEEETTSHHHHHHH
T ss_pred ----------------------------------------------------CCCCHHHhC--CCeEEEEcCchHHHHHH
Confidence 378999998 88999988887777777
Q ss_pred hhcCCCCccccccCCHHHHHHHhhcCceEEEEechhhHHHHHhccCC-ceEEeCccc--cccceEEEecCCCcChHHHHH
Q 003821 573 NVLGFKPENILKVDHEYKYITDFESNRIAAAFLELSYERAFLSQHCK-EYTATIPTY--RFGGFAFVFQKGSPLAADFSE 649 (793)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~c~-~~~~~~~~~--~~~~~~~~~~k~spl~~~in~ 649 (793)
+..+ ...++..+.+..+.+++|.+|++|+++.+...+.+++++... .+.+++... ...+++++++|+..+.+.+|+
T Consensus 164 ~~~~-~~~~i~~~~~~~~~~~~l~~G~vDa~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~ 242 (272)
T 2pvu_A 164 KLFG-KGPHIKKFETTVVAIMELLNGGVDAVITDNAVANEYVKNNPNKKLQVIEDPKNFASEYYGMIFPKNSELKAKVDE 242 (272)
T ss_dssp HHHC-SSTTEEEESSHHHHHHHHHTTSCSEEEEEHHHHHHHHHHCGGGCEEEECCTTTSCCEEECCEEETTCTTHHHHHH
T ss_pred HhcC-CCCeEEEcCCHHHHHHHHHcCCccEEEeCHHHHHHHHHhCCCCceEEeccccccCCceEEEEEeCCHHHHHHHHH
Confidence 6533 345677788999999999999999999999998888877543 367666543 556789999999449999999
Q ss_pred HHHhhhccCchHHHHHHHcCCC
Q 003821 650 AILKLSENGELRSLEEKWFAPS 671 (793)
Q Consensus 650 ~i~~l~e~G~~~~~~~~w~~~~ 671 (793)
+|.++.++|.++++.++|+...
T Consensus 243 ~l~~l~~~g~~~~i~~k~~~~~ 264 (272)
T 2pvu_A 243 ALKNVINSGKYTEIYKKWFGKE 264 (272)
T ss_dssp HHHHHHHTTHHHHHHHHHHSSC
T ss_pred HHHHHHhCChHHHHHHHHcCCC
Confidence 9999999999999999999864
No 66
>4i62_A Amino acid ABC transporter, periplasmic amino ACI protein, putative; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases (NIAI niaid; HET: ARG; 1.05A {Streptococcus pneumoniae}
Probab=99.74 E-value=8.6e-18 Score=172.78 Aligned_cols=209 Identities=21% Similarity=0.295 Sum_probs=176.1
Q ss_pred CCcEEEEecCCCCccceEE---eccCCCCCcceeeeeeHHHHHHHHHHCCCccceeEE------------EEeEEEecEE
Q 003821 346 AKPLIIGVPARTTFDKFVK---LISSDNPHKIIYDGYCIELFYKVLQVLKYDLPYEFS------------DYDAAIGDIT 410 (793)
Q Consensus 346 ~~~lrv~~~~~~~~~p~~~---~~~~~~~~~~~~~G~~~dll~~ia~~ln~~~~~~~~------------~~Di~~~~~~ 410 (793)
.++++|++. +.|+||.+ .+.+ + ++.|+++|+++.+++++|++++++.. ++|++++++.
T Consensus 38 ~~~l~v~~~--~~~~P~~~~~~~~~~----g-~~~G~~~dl~~~~~~~~g~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~ 110 (269)
T 4i62_A 38 KGKLVVALN--PDFAPFEYQKVVDGK----N-QIVGSDIELAKAIATELGVELELSPMSFDNVLASVQSGKADLAISGVS 110 (269)
T ss_dssp HTEEEEEEC--SCBTTTBEEEEETTE----E-EEESHHHHHHHHHHHHHTCEEEEEECCHHHHHHHHHTTSCSEECSSCB
T ss_pred CCeEEEEec--CCCCCceeecccCCC----C-cEeeecHHHHHHHHHHHCCceEEEEcCHHHHHHHHhCCCccEEecCCc
Confidence 357999985 45788887 5544 4 89999999999999999999544443 9999988899
Q ss_pred EecccccceeecccccccceEEEEecCCCCCCcEEecCCChhHHHHHHHHHHHHHHHHHhhhcccCCCCCCCccccchhH
Q 003821 411 ILVNRTRFVEFSQPYTESGLSMVVPAKAEQSPWIFIKPFTWGMWIVTGAILIYTMSVVWFLEHRWNPEFNGPWNIQIGTA 490 (793)
Q Consensus 411 ~t~~R~~~~dfs~p~~~~~~~~~v~~~~~~~~~~~l~PF~~~vWl~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (793)
.+++|.+.+.|+.||+..+.+++++++...
T Consensus 111 ~~~~r~~~~~~s~p~~~~~~~~~~~~~~~~-------------------------------------------------- 140 (269)
T 4i62_A 111 KTDERSKVFDFSTPYYTAKNKLIVKKSDLA-------------------------------------------------- 140 (269)
T ss_dssp CCHHHHTTEEECSCCEECCEEEEEEGGGTT--------------------------------------------------
T ss_pred CCHhHhhceecccchhhcceEEEEECCccc--------------------------------------------------
Confidence 999999999999999999999999887532
Q ss_pred HHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHhhhheeeeeccCCCCCCChHHhhhCCCcccccCchHHHHH
Q 003821 491 LWFTFSSLFFAHRERIYSNLTRLVVVVWLFVVLILNSSYTASLSSMLTVQRLKPNVTDIGWLKASNLNVGFDGDSFVRNY 570 (793)
Q Consensus 491 ~~~~~~~l~~~~~~~~~s~s~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~~~~~~g~~~~~~~~~~ 570 (793)
+|++++||. |.++|+..++....+
T Consensus 141 ------------------------------------------------------~i~~~~dL~--g~~i~~~~g~~~~~~ 164 (269)
T 4i62_A 141 ------------------------------------------------------TYQSVNDLA--QKKVGAQKGSIQETM 164 (269)
T ss_dssp ------------------------------------------------------TCSSGGGGC---CEEEEETTSHHHHH
T ss_pred ------------------------------------------------------cccCHHHhC--CCeEEEecCchHHHH
Confidence 589999998 899999888888888
Q ss_pred HHhhcCCCCccccccCCHHHHHHHhhcCceEEEEechhhHHHHHhccCCceEEeCcccc---ccceEEEecCCCc-ChHH
Q 003821 571 LENVLGFKPENILKVDHEYKYITDFESNRIAAAFLELSYERAFLSQHCKEYTATIPTYR---FGGFAFVFQKGSP-LAAD 646 (793)
Q Consensus 571 l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~c~~~~~~~~~~~---~~~~~~~~~k~sp-l~~~ 646 (793)
+.+. .+..++..+.+.++.+++|.+|++|+++.+...+.++++++.. +.+....+. ..+++++++|++| +.+.
T Consensus 165 l~~~--~~~~~~~~~~~~~~~~~~l~~g~vDa~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 241 (269)
T 4i62_A 165 AKDL--LQNSSLVSLPKNGNLITDLKSGQVDAVIFEEPVAKGFVENNPD-LAIADLNFEKEQDDSYAVAMKKDSKELKEA 241 (269)
T ss_dssp HHHH--CTTSEEEEESCHHHHHHHHHTTSSSEEEEEHHHHHHHHHHCTT-EEECSCCCCC-CCCEECCEEESSCHHHHHH
T ss_pred HHHh--CCCCcEEecCCHHHHHHHHHcCCCCEEEeChHHHHHHHHhCCC-CeEEeeccCCCcccceEEEEeCCCHHHHHH
Confidence 8775 4456778889999999999999999999999999888888765 444433332 5678999999998 9999
Q ss_pred HHHHHHhhhccCchHHHHHHHcCC
Q 003821 647 FSEAILKLSENGELRSLEEKWFAP 670 (793)
Q Consensus 647 in~~i~~l~e~G~~~~~~~~w~~~ 670 (793)
+|++|.++.++|.++++.++|+..
T Consensus 242 l~~~l~~l~~~g~~~~i~~k~~~~ 265 (269)
T 4i62_A 242 VDKTIQKLKESGELDKLIEDAFKA 265 (269)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCChHHHHHHHHhCC
Confidence 999999999999999999999875
No 67
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme}
Probab=99.74 E-value=7.5e-18 Score=168.39 Aligned_cols=208 Identities=20% Similarity=0.324 Sum_probs=169.8
Q ss_pred CcEEEEecCCCCccceEEeccCCCCCcceeeeeeHHHHHHHHHHCCCccceeEE-------------EEeEEEecEEEec
Q 003821 347 KPLIIGVPARTTFDKFVKLISSDNPHKIIYDGYCIELFYKVLQVLKYDLPYEFS-------------DYDAAIGDITILV 413 (793)
Q Consensus 347 ~~lrv~~~~~~~~~p~~~~~~~~~~~~~~~~G~~~dll~~ia~~ln~~~~~~~~-------------~~Di~~~~~~~t~ 413 (793)
++|+||+.. ++||.+. ++ + ++.|+++|+++.+++++|+++++... ++|++++++..++
T Consensus 3 ~~l~v~~~~---~~P~~~~-~~----g-~~~G~~~dl~~~~~~~~g~~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~~~ 73 (228)
T 2pyy_A 3 QPLLVATRV---IPPFVLS-NK----G-ELSGFSIDLWRSIATQIGIESKLIEYSSVPELISAIKDNKVNLGIAAISITA 73 (228)
T ss_dssp -CEEEEECC---BTTTBBC-C--------CBSHHHHHHHHHHHHHTCCEEEEECSSHHHHHHHHHTTSCSEECSSCBCCH
T ss_pred ceEEEEecC---CCCeEEe-cC----C-ceEEEeHHHHHHHHHHhCCcEEEEEcCCHHHHHHHHHCCCcCEEEeccccCH
Confidence 579999863 6777776 33 3 79999999999999999999544443 9999988888999
Q ss_pred ccccceeecccccccceEEEEecCCCCCCcEEecCCChhHHHHHHHHHHHHHHHHHhhhcccCCCCCCCccccchhHHHH
Q 003821 414 NRTRFVEFSQPYTESGLSMVVPAKAEQSPWIFIKPFTWGMWIVTGAILIYTMSVVWFLEHRWNPEFNGPWNIQIGTALWF 493 (793)
Q Consensus 414 ~R~~~~dfs~p~~~~~~~~~v~~~~~~~~~~~l~PF~~~vWl~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (793)
+|.+.+.|+.||+..+.+++++++.+.
T Consensus 74 ~r~~~~~~~~p~~~~~~~~~~~~~~~~----------------------------------------------------- 100 (228)
T 2pyy_A 74 EREQNFDFSLPIFASGLQIMVRNLESG----------------------------------------------------- 100 (228)
T ss_dssp HHHHHSEECSCSEEEEEEEEEEC---------------------------------------------------------
T ss_pred HHHccceecccchhcceEEEEECCccc-----------------------------------------------------
Confidence 999999999999999999999887531
Q ss_pred HHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHhhhheeeeeccCCCCCCChHHhhhCCCcccccCchHHHHHHHh
Q 003821 494 TFSSLFFAHRERIYSNLTRLVVVVWLFVVLILNSSYTASLSSMLTVQRLKPNVTDIGWLKASNLNVGFDGDSFVRNYLEN 573 (793)
Q Consensus 494 ~~~~l~~~~~~~~~s~s~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~~~~~~g~~~~~~~~~~l~~ 573 (793)
...+++++||. |.++|+..++....++.+
T Consensus 101 -------------------------------------------------~~~~~~~~dL~--g~~i~~~~g~~~~~~l~~ 129 (228)
T 2pyy_A 101 -------------------------------------------------TGDIRSIDDLP--GKVVATTAGSTAATYLRE 129 (228)
T ss_dssp --------------------------------------------------CCCCSGGGCT--TCEEEEETTSHHHHHHHH
T ss_pred -------------------------------------------------cCCcCCHHHcC--CCeEEEEcCcHHHHHHHH
Confidence 01589999998 899999888877777765
Q ss_pred hcCCCCccccccCCHHHHHHHhhcCceEEEEechhhHHHHHhccC-CceEEeCccccccceEEEecCCCcChHHHHHHHH
Q 003821 574 VLGFKPENILKVDHEYKYITDFESNRIAAAFLELSYERAFLSQHC-KEYTATIPTYRFGGFAFVFQKGSPLAADFSEAIL 652 (793)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~c-~~~~~~~~~~~~~~~~~~~~k~spl~~~in~~i~ 652 (793)
. ..++..+.+..+.+++|.+|++|+++.+...+.+.+++.. ..+.+.+..+...+++++++|++++.+.+|++|.
T Consensus 130 ~----~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~ 205 (228)
T 2pyy_A 130 H----HISVLEVPKIEEAYKALQTKKADAVVFDAPVLLFYAANEGKGKVEIVGSILREESYGIILPNNSPYRKPINQALL 205 (228)
T ss_dssp T----TCEEEEESSHHHHHHHHHTTSSSEEEEEHHHHHHHHHTTTTTTEEEEEEEEEEEEECCEECTTCTTHHHHHHHHH
T ss_pred c----CCceEecCCHHHHHHHHHcCCCCEEEecHHHHHHHHHhCCCCcEEEecccccceeEEEEEeCChHHHHHHHHHHH
Confidence 2 2356678899999999999999999999988888877754 2466666666667889999999999999999999
Q ss_pred hhhccCchHHHHHHHcCCC
Q 003821 653 KLSENGELRSLEEKWFAPS 671 (793)
Q Consensus 653 ~l~e~G~~~~~~~~w~~~~ 671 (793)
++.++|.++++.++|+...
T Consensus 206 ~l~~~g~~~~i~~k~~~~~ 224 (228)
T 2pyy_A 206 NLKENGTYQSLYDKWFDPK 224 (228)
T ss_dssp HHHHTTHHHHHHHHHHCC-
T ss_pred HHHhCCcHHHHHHHHcCCc
Confidence 9999999999999999864
No 68
>3qax_A Probable ABC transporter arginine-binding protein; periplasmic, transport PR; HET: ARG; 2.00A {Chlamydophila pneumoniae} PDB: 3g41_A* 3n26_A*
Probab=99.73 E-value=1.4e-17 Score=171.05 Aligned_cols=207 Identities=20% Similarity=0.239 Sum_probs=178.2
Q ss_pred CCcEEEEecCCCCccceEEeccCCCCCcceeeeeeHHHHHHHHHHCCCccceeEE------------EEeEEEecEEEec
Q 003821 346 AKPLIIGVPARTTFDKFVKLISSDNPHKIIYDGYCIELFYKVLQVLKYDLPYEFS------------DYDAAIGDITILV 413 (793)
Q Consensus 346 ~~~lrv~~~~~~~~~p~~~~~~~~~~~~~~~~G~~~dll~~ia~~ln~~~~~~~~------------~~Di~~~~~~~t~ 413 (793)
.++|+|++. +.++||.+.+.+ + ++.|+++|+++.+++++|++++++.. ++|+++++++.++
T Consensus 30 ~~~l~v~~~--~~~~P~~~~~~~----g-~~~G~~~dl~~~i~~~~g~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~~~ 102 (268)
T 3qax_A 30 NRIWIVGTN--ATYPPFEYVDAQ----G-EVVGFDIDLAKAISEKLGKQLEVREFAFDALILNLKKHRIDAILAGMSITP 102 (268)
T ss_dssp -CEEEEEEC--SCBTTTBEECTT----S-CEESHHHHHHHHHHHHHTCEEEEEECCGGGHHHHHHHTSSSEECSCCBCCH
T ss_pred CCeEEEEEC--CCCCCceEECCC----C-CEEEEEHHHHHHHHHHhCCeEEEEecCHHHHHHHHhCCCccEEeecCccCH
Confidence 457999984 457888887655 4 89999999999999999999544443 9999988899999
Q ss_pred ccccceeeccccc--ccceEEEEecCCCCCCcEEecCCChhHHHHHHHHHHHHHHHHHhhhcccCCCCCCCccccchhHH
Q 003821 414 NRTRFVEFSQPYT--ESGLSMVVPAKAEQSPWIFIKPFTWGMWIVTGAILIYTMSVVWFLEHRWNPEFNGPWNIQIGTAL 491 (793)
Q Consensus 414 ~R~~~~dfs~p~~--~~~~~~~v~~~~~~~~~~~l~PF~~~vWl~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (793)
+|.+.++| .||+ ..+.++++++...
T Consensus 103 ~r~~~~~~-~p~~~~~~~~~~~~~~~~~---------------------------------------------------- 129 (268)
T 3qax_A 103 SRQKEIAL-LPYYGDEVQELMVVSKRSL---------------------------------------------------- 129 (268)
T ss_dssp HHHTTSEE-EEEECCCBCEEEEEEETTS----------------------------------------------------
T ss_pred hHhcceee-ecceecccceEEEEECCCC----------------------------------------------------
Confidence 99999999 9999 8999999988743
Q ss_pred HHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHhhhheeeeeccCCCCCCChHHhhhCCCcccccCchHHHHHH
Q 003821 492 WFTFSSLFFAHRERIYSNLTRLVVVVWLFVVLILNSSYTASLSSMLTVQRLKPNVTDIGWLKASNLNVGFDGDSFVRNYL 571 (793)
Q Consensus 492 ~~~~~~l~~~~~~~~~s~s~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~~~~~~g~~~~~~~~~~l 571 (793)
+|++++||. |.++|+..++....++
T Consensus 130 -----------------------------------------------------~i~~~~dL~--g~~i~~~~g~~~~~~l 154 (268)
T 3qax_A 130 -----------------------------------------------------ETPVLPLTQ--YSSVAVQTGTYQEHYL 154 (268)
T ss_dssp -----------------------------------------------------CSCCCCGGG--SSCEEEETTSHHHHHH
T ss_pred -----------------------------------------------------CCCCHHHhC--CCEEEEecCcHHHHHH
Confidence 589999998 8899998888888877
Q ss_pred HhhcCCCCccccccCCHHHHHHHhhcCceEEEEechhhHHHHHhccCCceEEeCccccccc----eEEEecCCCc-ChHH
Q 003821 572 ENVLGFKPENILKVDHEYKYITDFESNRIAAAFLELSYERAFLSQHCKEYTATIPTYRFGG----FAFVFQKGSP-LAAD 646 (793)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~----~~~~~~k~sp-l~~~ 646 (793)
.. .+..++..+.+..+.+++|.+|++|+++.+...+.++++++.. +.+++..+...+ ++++++|++| +++.
T Consensus 155 ~~---~~~~~~~~~~~~~~~~~~l~~G~vDa~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~ 230 (268)
T 3qax_A 155 LS---QPGICVRSFDSTLEVIMEVRYGKSPVAVLEPSVGRVVLKDFPN-LVATRLELPPECWVLGCGLGVAKDRPEEIQT 230 (268)
T ss_dssp HT---STTCCEEEESCHHHHHHHHHTTSSSEEEECHHHHHHHGGGCTT-EEEEEEECCGGGCBCCEEEEECTTCHHHHHH
T ss_pred Hh---CCCceEEecCCHHHHHHHHHcCCCCEEEecHHHHHHHHHhCCC-cEEecCccCcccccccEEEEEeCCCHHHHHH
Confidence 76 4456777889999999999999999999999999999888776 677666666666 9999999998 9999
Q ss_pred HHHHHHhhhccCchHHHHHHHcCCC
Q 003821 647 FSEAILKLSENGELRSLEEKWFAPS 671 (793)
Q Consensus 647 in~~i~~l~e~G~~~~~~~~w~~~~ 671 (793)
+|++|.++.++|.++++.++|+...
T Consensus 231 l~~~l~~l~~~g~~~~i~~k~~~~~ 255 (268)
T 3qax_A 231 IQQAITDLKSEGVIQSLTKKWQLSE 255 (268)
T ss_dssp HHHHHHHHHHTTHHHHHHHHTTCSC
T ss_pred HHHHHHHHHHCCcHHHHHHHHcCCc
Confidence 9999999999999999999999764
No 69
>2yln_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-BIND protein; HET: CYS GOL; 1.12A {Neisseria gonorrhoeae} PDB: 3zsf_A
Probab=99.72 E-value=2.8e-17 Score=170.51 Aligned_cols=207 Identities=20% Similarity=0.263 Sum_probs=175.9
Q ss_pred CCcEEEEecCCCCccceEEeccCCCCCcceeeeeeHHHHHHHHHHCCCccceeEE------------EEeEEEecEEE-e
Q 003821 346 AKPLIIGVPARTTFDKFVKLISSDNPHKIIYDGYCIELFYKVLQVLKYDLPYEFS------------DYDAAIGDITI-L 412 (793)
Q Consensus 346 ~~~lrv~~~~~~~~~p~~~~~~~~~~~~~~~~G~~~dll~~ia~~ln~~~~~~~~------------~~Di~~~~~~~-t 412 (793)
.++|||++. +.|+||.+.+++ + .+.|+.+|+++.+++++|++++++.. ++|++++++.. +
T Consensus 56 ~~~l~v~~~--~~~~P~~~~~~~----g-~~~G~~~dl~~~i~~~~G~~v~~~~~~~~~~~~~l~~G~~D~~~~~~~~~t 128 (283)
T 2yln_A 56 KGTVTVGTE--GTYAPFTYHDKD----G-KLTGYDVEVTRAVAEKLGVKVEFKETQWDSMMAGLKAGRFDVVANQVGLTS 128 (283)
T ss_dssp TCEEEEEEC--SEETTTEEECTT----S-CEESHHHHHHHHHHHHHTCEEEEEECCGGGHHHHHHHTSCSEECSSCCCCS
T ss_pred CCeEEEEEC--CCCCCeeEECCC----C-CEeeehHHHHHHHHHHcCCceEEEECCHHHHHHHHHCCCcCEEEecCccCC
Confidence 367999985 348899888754 4 79999999999999999999444433 89999888888 9
Q ss_pred cccccceeecccccccceEEEEecCCCCCCcEEecCCChhHHHHHHHHHHHHHHHHHhhhcccCCCCCCCccccchhHHH
Q 003821 413 VNRTRFVEFSQPYTESGLSMVVPAKAEQSPWIFIKPFTWGMWIVTGAILIYTMSVVWFLEHRWNPEFNGPWNIQIGTALW 492 (793)
Q Consensus 413 ~~R~~~~dfs~p~~~~~~~~~v~~~~~~~~~~~l~PF~~~vWl~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (793)
.+|.+.++|+.||+..+..+++++..
T Consensus 129 ~~r~~~~~~~~p~~~~~~~l~~~~~~------------------------------------------------------ 154 (283)
T 2yln_A 129 PERQATFDKSEPYSWSGAVLVAHNDS------------------------------------------------------ 154 (283)
T ss_dssp HHHHHHEEECSCSEEECEEEEEETTC------------------------------------------------------
T ss_pred hhhhcceEeccCeeeecEEEEEECCC------------------------------------------------------
Confidence 99999999999999999999998865
Q ss_pred HHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHhhhheeeeeccCCCCCCChHHhhhCCCcccccCchHHHHHHH
Q 003821 493 FTFSSLFFAHRERIYSNLTRLVVVVWLFVVLILNSSYTASLSSMLTVQRLKPNVTDIGWLKASNLNVGFDGDSFVRNYLE 572 (793)
Q Consensus 493 ~~~~~l~~~~~~~~~s~s~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~~~~~~g~~~~~~~~~~l~ 572 (793)
+|++++||. |.++|+..++....++.
T Consensus 155 ----------------------------------------------------~i~s~~dL~--G~~v~v~~g~~~~~~l~ 180 (283)
T 2yln_A 155 ----------------------------------------------------NIKSIADIK--GVKTAQSLTSNYGEKAK 180 (283)
T ss_dssp ----------------------------------------------------SCCSGGGCT--TSEEEECTTSHHHHHHH
T ss_pred ----------------------------------------------------CCCCHHHhC--CCEEEEecCchHHHHHH
Confidence 389999997 89999988887777776
Q ss_pred hhcCCCCccccccCCHHHHHHHhhcCceEEEEechhhHHHHHhccC-CceEEeC-cccc-ccceEEEecCCCc-ChHHHH
Q 003821 573 NVLGFKPENILKVDHEYKYITDFESNRIAAAFLELSYERAFLSQHC-KEYTATI-PTYR-FGGFAFVFQKGSP-LAADFS 648 (793)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~c-~~~~~~~-~~~~-~~~~~~~~~k~sp-l~~~in 648 (793)
+. ..++..+.+..+.+.+|.+|++|+++.+...+.+++++.. ..+.+++ ..+. ..+++++++|++| +.+.||
T Consensus 181 ~~----~~~~~~~~~~~~~~~~l~~g~vDa~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~k~~~~l~~~i~ 256 (283)
T 2yln_A 181 AA----GAQLVPVDGLAQSLTLIEQKRADATLNDELAVLDYLKKNPNAGVKIVWSAPADEKVGSGLIVNKGNDEAVAKFS 256 (283)
T ss_dssp HT----TCEEEECSSHHHHHHHHHTTSCCEEEEEHHHHHHHHHHSTTSSEEEEEECCGGGCEEECCEEESSCHHHHHHHH
T ss_pred Hc----CCeEEEeCCHHHHHHHHHcCCCCEEEecHHHHHHHHHhCCCCcEEEccCcccCCcccEEEEEeCCCHHHHHHHH
Confidence 54 3456778889999999999999999999999988877754 2377776 5666 6788999999987 999999
Q ss_pred HHHHhhhccCchHHHHHHHcCCC
Q 003821 649 EAILKLSENGELRSLEEKWFAPS 671 (793)
Q Consensus 649 ~~i~~l~e~G~~~~~~~~w~~~~ 671 (793)
++|.++.++|.++++.++|+...
T Consensus 257 ~al~~l~~~g~~~~i~~k~~~~~ 279 (283)
T 2yln_A 257 TAINELKADGTLKKLGEQFFGKD 279 (283)
T ss_dssp HHHHHHHHTTHHHHHHHHHHSSC
T ss_pred HHHHHHHHCCcHHHHHHHHcCCC
Confidence 99999999999999999999764
No 70
>1xt8_A Putative amino-acid transporter periplasmic solut protein; ABC transport, cysteine uptake; 2.00A {Campylobacter jejuni} SCOP: c.94.1.1
Probab=99.72 E-value=1.8e-17 Score=172.78 Aligned_cols=207 Identities=19% Similarity=0.240 Sum_probs=177.3
Q ss_pred CCcEEEEecCCCCccceEEeccCCCCCcceeeeeeHHHHHHHHHHC---CCccceeEE------------EEeEEEecEE
Q 003821 346 AKPLIIGVPARTTFDKFVKLISSDNPHKIIYDGYCIELFYKVLQVL---KYDLPYEFS------------DYDAAIGDIT 410 (793)
Q Consensus 346 ~~~lrv~~~~~~~~~p~~~~~~~~~~~~~~~~G~~~dll~~ia~~l---n~~~~~~~~------------~~Di~~~~~~ 410 (793)
.++|+|++. +.++||.+.+++ + .+.|+++|+++.+++++ |++++++.. ++|++++++.
T Consensus 43 ~~~l~v~~~--~~~~P~~~~~~~----g-~~~G~~~dl~~~i~~~~~~~g~~~~~~~~~~~~~~~~l~~G~~D~~~~~~~ 115 (292)
T 1xt8_A 43 NGVVRIGVF--GDKPPFGYVDEK----G-NNQGYDIALAKRIAKELFGDENKVQFVLVEAANRVEFLKSNKVDIILANFT 115 (292)
T ss_dssp HSSEEEEEC--SEETTTEEECTT----S-CEESHHHHHHHHHHHHHHSCTTCEEEEECCGGGHHHHHHTTSCSEECSSCB
T ss_pred CCeEEEEEC--CCCCCeeEECCC----C-CEeeEhHHHHHHHHHHhccCCceEEEEEcCHHHHHHHHhCCCeeEEeecCC
Confidence 357999985 348888887654 4 79999999999999999 999544443 9999988888
Q ss_pred EecccccceeecccccccceEEEEecCCCCCCcEEecCCChhHHHHHHHHHHHHHHHHHhhhcccCCCCCCCccccchhH
Q 003821 411 ILVNRTRFVEFSQPYTESGLSMVVPAKAEQSPWIFIKPFTWGMWIVTGAILIYTMSVVWFLEHRWNPEFNGPWNIQIGTA 490 (793)
Q Consensus 411 ~t~~R~~~~dfs~p~~~~~~~~~v~~~~~~~~~~~l~PF~~~vWl~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (793)
.+++|.+.+.|+.||+..+.++++++..
T Consensus 116 ~~~~r~~~~~~s~p~~~~~~~~~~~~~~---------------------------------------------------- 143 (292)
T 1xt8_A 116 QTPQRAEQVDFCSPYMKVALGVAVPKDS---------------------------------------------------- 143 (292)
T ss_dssp CCHHHHTTEEECCCCEEEEEEEEEETTC----------------------------------------------------
T ss_pred CCcchhcceeeeccceecceEEEEECCC----------------------------------------------------
Confidence 9999999999999999999999998765
Q ss_pred HHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHhhhheeeeeccCCCCCCChHHhhhCCCcccccCchHHHHH
Q 003821 491 LWFTFSSLFFAHRERIYSNLTRLVVVVWLFVVLILNSSYTASLSSMLTVQRLKPNVTDIGWLKASNLNVGFDGDSFVRNY 570 (793)
Q Consensus 491 ~~~~~~~l~~~~~~~~~s~s~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~~~~~~g~~~~~~~~~~ 570 (793)
+|++++||. |.++|+..++....+
T Consensus 144 ------------------------------------------------------~i~~~~dL~--g~~i~~~~g~~~~~~ 167 (292)
T 1xt8_A 144 ------------------------------------------------------NITSVEDLK--DKTLLLNKGTTADAY 167 (292)
T ss_dssp ------------------------------------------------------CCCSSGGGT--TSEEEEETTSHHHHH
T ss_pred ------------------------------------------------------CCCCHHHhC--CCEEEEeCCCcHHHH
Confidence 378999998 899999888877777
Q ss_pred HHhhcCCCCccccccCCHHHHHHHhhcCceEEEEechhhHHHHHhccCCceEEeCccccccce-EEEecCCCc-ChHHHH
Q 003821 571 LENVLGFKPENILKVDHEYKYITDFESNRIAAAFLELSYERAFLSQHCKEYTATIPTYRFGGF-AFVFQKGSP-LAADFS 648 (793)
Q Consensus 571 l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~-~~~~~k~sp-l~~~in 648 (793)
+.+. .+..++..+.+..+.+++|.+|++|+++.+...+.+++++..+ +.+++..+...++ +++++|++| +.+.+|
T Consensus 168 l~~~--~~~~~~~~~~~~~~~~~~L~~G~vDa~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~k~~~~l~~~l~ 244 (292)
T 1xt8_A 168 FTQN--YPNIKTLKYDQNTETFAALMDKRGDALSHDNTLLFAWVKDHPD-FKMGIKELGNKDVIAPAVKKGDKELKEFID 244 (292)
T ss_dssp HHHH--CTTSEEEEESSHHHHHHHHHTTSSSEEEEEHHHHHHHHHHCTT-EEEEEEEEEEEEEECCEEETTCHHHHHHHH
T ss_pred HHHh--CCCceEEEcCCHHHHHHHHHcCCccEEEecHHHHHHHHHhCCC-eEEcccccccCceeEEEEeCCCHHHHHHHH
Confidence 7765 3445677788999999999999999999999999998887765 7776656666677 999999998 999999
Q ss_pred HHHHhhhccCchHHHHHHHcCC
Q 003821 649 EAILKLSENGELRSLEEKWFAP 670 (793)
Q Consensus 649 ~~i~~l~e~G~~~~~~~~w~~~ 670 (793)
++|.++.++|.++++.++|+..
T Consensus 245 ~~l~~l~~~g~~~~i~~k~~~~ 266 (292)
T 1xt8_A 245 NLIIKLGQEQFFHKAYDETLKA 266 (292)
T ss_dssp HHHHHHHTTTHHHHHHHHHTGG
T ss_pred HHHHHHHhCcHHHHHHHHhcCC
Confidence 9999999999999999999985
No 71
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-binding protein; 2.26A {Neisseria gonorrhoeae}
Probab=99.72 E-value=2.1e-17 Score=172.15 Aligned_cols=206 Identities=19% Similarity=0.276 Sum_probs=177.5
Q ss_pred CcEEEEecCCCCccceEEeccCCCCCcceeeeeeHHHHHHHHHHC---CCccceeEE------------EEeEEEecEEE
Q 003821 347 KPLIIGVPARTTFDKFVKLISSDNPHKIIYDGYCIELFYKVLQVL---KYDLPYEFS------------DYDAAIGDITI 411 (793)
Q Consensus 347 ~~lrv~~~~~~~~~p~~~~~~~~~~~~~~~~G~~~dll~~ia~~l---n~~~~~~~~------------~~Di~~~~~~~ 411 (793)
++||||+. +.|+||.+.+++ + .+.|+.+|+++.+++++ |++++++.. ++|++++++..
T Consensus 55 ~~l~vg~~--~~~~P~~~~~~~----g-~~~G~~~dl~~~i~~~~~~~g~~v~~~~~~~~~~~~~l~~G~~D~~~~~~~~ 127 (291)
T 2yjp_A 55 GVIRIGVF--GDKPPFGYVDAN----G-KNQGFDVEIAKDLAKDLLGSPDKVEFVLTEAANRVEYVRSGKVDLILANFTQ 127 (291)
T ss_dssp TCEEEEEC--SEETTTEEECTT----S-CEESHHHHHHHHHHHHHHSCGGGEEEEECCGGGHHHHHHTTSCSEECSSCBC
T ss_pred CeEEEEEc--CCCCCceEECCC----C-CEeehHHHHHHHHHHHhccCCceEEEEEccHHHHHHHHhCCCeeEEEeCCCC
Confidence 56999985 447888887754 4 89999999999999999 999544443 99999888889
Q ss_pred ecccccceeecccccccceEEEEecCCCCCCcEEecCCChhHHHHHHHHHHHHHHHHHhhhcccCCCCCCCccccchhHH
Q 003821 412 LVNRTRFVEFSQPYTESGLSMVVPAKAEQSPWIFIKPFTWGMWIVTGAILIYTMSVVWFLEHRWNPEFNGPWNIQIGTAL 491 (793)
Q Consensus 412 t~~R~~~~dfs~p~~~~~~~~~v~~~~~~~~~~~l~PF~~~vWl~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (793)
+.+|.+.++|+.||...+.++++++..
T Consensus 128 ~~~r~~~~~~~~p~~~~~~~l~~~~~~----------------------------------------------------- 154 (291)
T 2yjp_A 128 TPERAEAVDFADPYMKVALGVVSPKNK----------------------------------------------------- 154 (291)
T ss_dssp CHHHHTTEEECCCCEEECEEEEEETTS-----------------------------------------------------
T ss_pred ChHHHccceeccCeeecceEEEEeCCC-----------------------------------------------------
Confidence 999999999999999999999998766
Q ss_pred HHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHhhhheeeeeccCCCCCCChHHhhhCCCcccccCchHHHHHH
Q 003821 492 WFTFSSLFFAHRERIYSNLTRLVVVVWLFVVLILNSSYTASLSSMLTVQRLKPNVTDIGWLKASNLNVGFDGDSFVRNYL 571 (793)
Q Consensus 492 ~~~~~~l~~~~~~~~~s~s~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~~~~~~g~~~~~~~~~~l 571 (793)
.|++++||. |.++|+..++....++
T Consensus 155 -----------------------------------------------------~i~sl~dL~--gk~v~~~~g~~~~~~l 179 (291)
T 2yjp_A 155 -----------------------------------------------------PITDMAQLK--DQTLLVNKGTTADAFF 179 (291)
T ss_dssp -----------------------------------------------------CCCSGGGGT--TSEEEEETTSHHHHHH
T ss_pred -----------------------------------------------------CCCCHHHhC--CCEEEEecCCcHHHHH
Confidence 389999998 8999998888777777
Q ss_pred HhhcCCCCccccccCCHHHHHHHhhcCceEEEEechhhHHHHHhccCCceEEeCccccccce-EEEecCCCc-ChHHHHH
Q 003821 572 ENVLGFKPENILKVDHEYKYITDFESNRIAAAFLELSYERAFLSQHCKEYTATIPTYRFGGF-AFVFQKGSP-LAADFSE 649 (793)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~-~~~~~k~sp-l~~~in~ 649 (793)
... .+..++..+.+..+.+++|.+|++|+++.+...+.+++++... +.++...+...++ +++++|++| +.+.||+
T Consensus 180 ~~~--~~~~~~~~~~~~~~~~~~l~~G~vDa~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~k~~~~l~~~l~~ 256 (291)
T 2yjp_A 180 TKS--HPEVKLLKFDQNTETFDALKDGRGVALAHDNALLWAWAKENPN-FEVAIGNLGPAEFIAPAVQKGNADLLNWVNG 256 (291)
T ss_dssp HHH--CTTSEEEEESSHHHHHHHHHTTSSSEEEEEHHHHHHHHHHCTT-EEEEECCSSSCEEECCEEETTCHHHHHHHHH
T ss_pred HHh--CCCceEEEeCCHHHHHHHHHcCCccEEEecHHHHHHHHHhCCC-eEEcCCcccCCcceEEEEeCCCHHHHHHHHH
Confidence 765 3445677788999999999999999999999999988887765 7777666666777 999999998 9999999
Q ss_pred HHHhhhccCchHHHHHHHcCC
Q 003821 650 AILKLSENGELRSLEEKWFAP 670 (793)
Q Consensus 650 ~i~~l~e~G~~~~~~~~w~~~ 670 (793)
+|.++.++|.++++.++|+..
T Consensus 257 al~~l~~~g~~~~i~~k~~~~ 277 (291)
T 2yjp_A 257 EIAAMKKDGRLKAAYEKTLLP 277 (291)
T ss_dssp HHHHHHHHSHHHHHHHHHTHH
T ss_pred HHHHHHhCChHHHHHHHhccc
Confidence 999999999999999999874
No 72
>2vha_A Periplasmic binding transport protein; periplasmic binding protein, ligand binding, ultrahigh resolution; HET: GLU; 1.00A {Shigella flexneri} PDB: 2ia4_A*
Probab=99.71 E-value=3.5e-17 Score=170.20 Aligned_cols=211 Identities=15% Similarity=0.193 Sum_probs=175.0
Q ss_pred CCcEEEEecCCCCccceEEeccCCCCCcceeeeeeHHHHHHHHHH----CC---CccceeEE------------EEeEEE
Q 003821 346 AKPLIIGVPARTTFDKFVKLISSDNPHKIIYDGYCIELFYKVLQV----LK---YDLPYEFS------------DYDAAI 406 (793)
Q Consensus 346 ~~~lrv~~~~~~~~~p~~~~~~~~~~~~~~~~G~~~dll~~ia~~----ln---~~~~~~~~------------~~Di~~ 406 (793)
.++||||+. +.++||.+.+++ + ++.|+++|+++.+++. +| +++++... ++|+++
T Consensus 16 ~~~l~v~~~--~~~~P~~~~~~~----g-~~~G~~~dl~~~ia~~l~~~~G~~~~~v~~~~~~~~~~~~~l~~g~~D~~~ 88 (287)
T 2vha_A 16 NGVIVVGHR--ESSVPFSYYDNQ----Q-KVVGYSQDYSNAIVEAVKKKLNKPDLQVKLIPITSQNRIPLLQNGTFDFEC 88 (287)
T ss_dssp HTEEEEEEC--SEETTTEEECSS----S-CEESHHHHHHHHHHHHHHHHTTCTTCEEEEEECCTTTHHHHHHTTSCSEEC
T ss_pred CCeEEEEEc--CCCCCceEECCC----C-CcccccHHHHHHHHHHHHHhcCCCCceEEEEECCHHHHHHHHHCCCeeEEe
Confidence 467999985 357899887654 4 7999999999999976 56 67333333 999998
Q ss_pred ecEEEecccccceeecccccccceEEEEecCCCCCCcEEecCCChhHHHHHHHHHHHHHHHHHhhhcccCCCCCCCcccc
Q 003821 407 GDITILVNRTRFVEFSQPYTESGLSMVVPAKAEQSPWIFIKPFTWGMWIVTGAILIYTMSVVWFLEHRWNPEFNGPWNIQ 486 (793)
Q Consensus 407 ~~~~~t~~R~~~~dfs~p~~~~~~~~~v~~~~~~~~~~~l~PF~~~vWl~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 486 (793)
++++.+++|.+.++||.||+..+.++++++..
T Consensus 89 ~~~~~t~~r~~~~~~s~p~~~~~~~l~~~~~~------------------------------------------------ 120 (287)
T 2vha_A 89 GSTTNNVERQKQAAFSDTIFVVGTRLLTKKGG------------------------------------------------ 120 (287)
T ss_dssp SSCBCCHHHHTTCEEEEEEEEEEEEEEEETTS------------------------------------------------
T ss_pred ccccCCcchhhcccccceeeecceEEEEECCC------------------------------------------------
Confidence 88999999999999999999999999998765
Q ss_pred chhHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHhhhheeeeeccCCCCCCChHHhhhCCCcccccCchH
Q 003821 487 IGTALWFTFSSLFFAHRERIYSNLTRLVVVVWLFVVLILNSSYTASLSSMLTVQRLKPNVTDIGWLKASNLNVGFDGDSF 566 (793)
Q Consensus 487 ~~~~~~~~~~~l~~~~~~~~~s~s~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~~~~~~g~~~~~~ 566 (793)
+|++++||. |.++|+..++.
T Consensus 121 ----------------------------------------------------------~i~sl~dL~--g~~v~~~~g~~ 140 (287)
T 2vha_A 121 ----------------------------------------------------------DIKDFADLK--GKAVVVTSGTT 140 (287)
T ss_dssp ----------------------------------------------------------SCCSGGGGT--TCEEEEETTSH
T ss_pred ----------------------------------------------------------CCCCHHHcC--CCEEEEeCCCc
Confidence 479999998 88999988877
Q ss_pred HHHHHHhhcC--CCCccccccCCHHHHHHHhhcCceEEEEechhhHHHHHhccC--CceEEeCccccccceEEEecCCCc
Q 003821 567 VRNYLENVLG--FKPENILKVDHEYKYITDFESNRIAAAFLELSYERAFLSQHC--KEYTATIPTYRFGGFAFVFQKGSP 642 (793)
Q Consensus 567 ~~~~l~~~~~--~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~c--~~~~~~~~~~~~~~~~~~~~k~sp 642 (793)
...++..... ....++..+.+..+.+++|.+|++|+++.+...+.+++++.. ..+.+++..+...+++++++|++|
T Consensus 141 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~G~vDa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 220 (287)
T 2vha_A 141 SEVLLNKLNEEQKMNMRIISAKDHGDSFRTLESGRAVAFMMDDALLAGERAKAKKPDNWDIVGKPQSQEAYGCMLRKDDP 220 (287)
T ss_dssp HHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHTTSCSEEEEEHHHHHHHHTTSSSGGGEEEESCCSCEEEEEEEECTTCH
T ss_pred HHHHHHHHhhccCCCceEEEcCCHHHHHHHHHcCCeeEEEeChHHHHHHHHhCCCCCceEecCCccccCceEEEEeCCCH
Confidence 7766655321 123466778899999999999999999999999888887642 347777766667789999999988
Q ss_pred -ChHHHHHHHHhhhccCchHHHHHHHcCCC
Q 003821 643 -LAADFSEAILKLSENGELRSLEEKWFAPS 671 (793)
Q Consensus 643 -l~~~in~~i~~l~e~G~~~~~~~~w~~~~ 671 (793)
++..+|++|.++.++|.++++.++|+...
T Consensus 221 ~l~~~l~~~l~~l~~~g~~~~i~~k~~~~~ 250 (287)
T 2vha_A 221 QFKKLMDDTIAQVQTSGEAEKWFDKWFKNP 250 (287)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHhCchHHHHHHHHcCCC
Confidence 99999999999999999999999999865
No 73
>2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate, transport, ABC transport, virulence factor, receptor; 1.49A {Campylobacter jejuni}
Probab=99.56 E-value=2.4e-15 Score=153.40 Aligned_cols=203 Identities=16% Similarity=0.291 Sum_probs=163.1
Q ss_pred CCcEEEEecCCCCccceEEeccCCCCCcceeeeeeHHHHHHHHHHC---CCccceeEE------------EEeEEEecEE
Q 003821 346 AKPLIIGVPARTTFDKFVKLISSDNPHKIIYDGYCIELFYKVLQVL---KYDLPYEFS------------DYDAAIGDIT 410 (793)
Q Consensus 346 ~~~lrv~~~~~~~~~p~~~~~~~~~~~~~~~~G~~~dll~~ia~~l---n~~~~~~~~------------~~Di~~~~~~ 410 (793)
.++||||+. +.++||.+.+.+. + .+.|+++|+++.+++++ |++++++.. ++|++++++.
T Consensus 37 ~~~l~vg~~--~~~~p~~~~~~~~---g-~~~G~~~~l~~~~~~~~~~pg~~v~~~~~~~~~~~~~l~~g~~D~~~~~~~ 110 (259)
T 2v25_A 37 KGQLIVGVK--NDVPHYALLDQAT---G-EIKGFEVDVAKLLAKSILGDDKKIKLVAVNAKTRGPLLDNGSVDAVIATFT 110 (259)
T ss_dssp HTCEEEEEC--SEETTTEEEETTT---T-EEESHHHHHHHHHHHHHHSCTTSEEEEECCTTTHHHHHHTTSCSEECSSCB
T ss_pred CCeEEEEEC--CCCCCeEEEECCC---C-eEEEeeHHHHHHHHHHhcCCCcceEEEEcCHHHHHHHHhCCCCCEEEecCc
Confidence 357999985 4578888876320 3 89999999999999999 999444433 9999988888
Q ss_pred EecccccceeecccccccceEEEEecCCCCCCcEEecCCChhHHHHHHHHHHHHHHHHHhhhcccCCCCCCCccccchhH
Q 003821 411 ILVNRTRFVEFSQPYTESGLSMVVPAKAEQSPWIFIKPFTWGMWIVTGAILIYTMSVVWFLEHRWNPEFNGPWNIQIGTA 490 (793)
Q Consensus 411 ~t~~R~~~~dfs~p~~~~~~~~~v~~~~~~~~~~~l~PF~~~vWl~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (793)
.+++|.+.++|+.||...+.+++++...
T Consensus 111 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~---------------------------------------------------- 138 (259)
T 2v25_A 111 ITPERKRIYNFSEPYYQDAIGLLVLKEK---------------------------------------------------- 138 (259)
T ss_dssp CCHHHHTTEEECSCSEEEEEEEEEEGGG----------------------------------------------------
T ss_pred cCHHHHhcCcccccceeCceEEEEeCCC----------------------------------------------------
Confidence 8999999999999999999999998765
Q ss_pred HHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHhhhheeeeeccCCCCCCChHHhhhCCCcccccCchHHHHH
Q 003821 491 LWFTFSSLFFAHRERIYSNLTRLVVVVWLFVVLILNSSYTASLSSMLTVQRLKPNVTDIGWLKASNLNVGFDGDSFVRNY 570 (793)
Q Consensus 491 ~~~~~~~l~~~~~~~~~s~s~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~~~~~~g~~~~~~~~~~ 570 (793)
++++++||. +.++++..++....+
T Consensus 139 ------------------------------------------------------~i~~~~dL~--g~~i~~~~g~~~~~~ 162 (259)
T 2v25_A 139 ------------------------------------------------------KYKSLADMK--GANIGVAQAATTKKA 162 (259)
T ss_dssp ------------------------------------------------------CCCSGGGCT--TCEEEEETTCSHHHH
T ss_pred ------------------------------------------------------CCCCHHHhC--CCEEEEecCCchHHH
Confidence 378999998 888998777655555
Q ss_pred HHhh---cCCCCccccccCCHHHHHHHhhcCceEEEEechhhHHHHHhccCCceEEeCccccccceEEEecCCCc-ChHH
Q 003821 571 LENV---LGFKPENILKVDHEYKYITDFESNRIAAAFLELSYERAFLSQHCKEYTATIPTYRFGGFAFVFQKGSP-LAAD 646 (793)
Q Consensus 571 l~~~---~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~k~sp-l~~~ 646 (793)
+... .+. ..++..+.+..+.++++.+|++|+++.+...+.++++++.+ +.+..+...+++++++|++| +.+.
T Consensus 163 ~~~~~~~~g~-~~~~~~~~~~~~~~~~l~~g~vDa~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~k~~~~l~~~ 238 (259)
T 2v25_A 163 IGEAAKKIGI-DVKFSEFPDYPSIKAALDAKRVDAFSVDKSILLGYVDDKSE---ILPDSFEPQSYGIVTKKDDPAFAKY 238 (259)
T ss_dssp HHHHHHHTTC-CCEEEEESSHHHHHHHHHTTSSSEEEEEHHHHTTTCCTTEE---ECSCCCSEEEECCEEETTCHHHHHH
T ss_pred HHHHHHhcCC-ceeEEEeCCHHHHHHHHHcCCCcEEEecHHHHHHHHHhCCC---ccccccccceeEEEEcCCCHHHHHH
Confidence 5442 122 12456788999999999999999999998888777766543 44555556678999999986 9999
Q ss_pred HHHHHHhhhccCchHHHHHHHc
Q 003821 647 FSEAILKLSENGELRSLEEKWF 668 (793)
Q Consensus 647 in~~i~~l~e~G~~~~~~~~w~ 668 (793)
+|++|.++.++ ++++.++|.
T Consensus 239 ~~~~l~~~~~~--~~~i~~k~~ 258 (259)
T 2v25_A 239 VDDFVKEHKNE--IDALAKKWG 258 (259)
T ss_dssp HHHHHHHTHHH--HHHHHHHTT
T ss_pred HHHHHHHHHHH--HHHHHHHhC
Confidence 99999999999 899999984
No 74
>3n5l_A Binding protein component of ABC phosphonate TRAN; structural genomics, joint center for structural genomics; HET: UNL; 1.97A {Pseudomonas aeruginosa}
Probab=98.21 E-value=2.8e-06 Score=88.22 Aligned_cols=123 Identities=11% Similarity=0.103 Sum_probs=82.9
Q ss_pred CCCChHHhhh--CCCcccc-cCch----HHHHH-HHhhcCCCC---ccccccCCHHHHHHHhhcCceEEEEechhhHHHH
Q 003821 545 NVTDIGWLKA--SNLNVGF-DGDS----FVRNY-LENVLGFKP---ENILKVDHEYKYITDFESNRIAAAFLELSYERAF 613 (793)
Q Consensus 545 ~i~sl~dL~~--~~~~~g~-~~~~----~~~~~-l~~~~~~~~---~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~ 613 (793)
+|+|++||.+ .+.++++ ..++ ....+ +....+... .......+..+.+.+|.+|++|+.+.+...+..+
T Consensus 103 ~i~sl~DL~~~~kgk~ia~~~~gs~~~~l~~~~~l~~~~Gi~~~~~~~~v~~g~~~~~~~al~~G~vDa~~~~~~~~~~~ 182 (310)
T 3n5l_A 103 KIDSLEDMLANAKSLTFGNGDPNSTSGYLVPGYYVFAKNNVDPVKAFKRTLNSSHEVNALAVANKQVDVATFNTEGMERL 182 (310)
T ss_dssp SCCSHHHHHHTGGGCEEEECCTTCTTTTHHHHHHTTTTTTCCHHHHSSEEEECCHHHHHHHHHTTSSSEEEEEHHHHHHH
T ss_pred CCCCHHHHhhhcCCCEEEecCCCccHhHHHHHHHHHHHcCCChHHhccccccCCHHHHHHHHHcCCccEEEecchhHHHH
Confidence 5899999921 3667774 2222 22222 222222221 1122235667889999999999999998888877
Q ss_pred HhccC---CceEEeCccccccceEEEecCCC-c-ChHHHHHHHHhhhccCchHHHHHHH
Q 003821 614 LSQHC---KEYTATIPTYRFGGFAFVFQKGS-P-LAADFSEAILKLSENGELRSLEEKW 667 (793)
Q Consensus 614 ~~~~c---~~~~~~~~~~~~~~~~~~~~k~s-p-l~~~in~~i~~l~e~G~~~~~~~~w 667 (793)
.++.. ..++++........++++++|+- + +++.++.+|.++.++|..+++.+++
T Consensus 183 ~~~~~~~~~~lrvl~~s~~~p~~~i~~~~~~~~~l~~~l~~al~~~~~d~~~~~~l~~~ 241 (310)
T 3n5l_A 183 ELTQPEKARQLKVIWKSPLIPGDPLVWRNNLSDEQKNKLRDFFFKYGANAEQKKVLADL 241 (310)
T ss_dssp HHHCHHHHTTEEEEEEEEEEECCEEEEETTSCHHHHHHHHHHHHHCCCSHHHHHHHHHT
T ss_pred HHhCccchhCEEEEEECCCCCCCcEEEECCCCHHHHHHHHHHHHhcCCChhHHHHHHhc
Confidence 76542 23666554434456789999994 4 9999999999999999988887776
No 75
>2ozz_A Hypothetical protein YHFZ; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; 2.30A {Shigella flexneri 2A} SCOP: c.94.1.1
Probab=98.20 E-value=9e-07 Score=85.78 Aligned_cols=154 Identities=12% Similarity=0.072 Sum_probs=114.1
Q ss_pred eeeeeeHHHHHHHHHHCCCccceeEE-------------EEeEEEecEEEecc------cccceeecccccccceEEEEe
Q 003821 375 IYDGYCIELFYKVLQVLKYDLPYEFS-------------DYDAAIGDITILVN------RTRFVEFSQPYTESGLSMVVP 435 (793)
Q Consensus 375 ~~~G~~~dll~~ia~~ln~~~~~~~~-------------~~Di~~~~~~~t~~------R~~~~dfs~p~~~~~~~~~v~ 435 (793)
+|+|+.--|.+.+. |+++.+... ++|+++.+++.+++ |...++|+.||+.+.-.++++
T Consensus 29 ~yeGlatgl~~~f~---gi~~~i~~mrg~~~RI~aL~~gk~D~aI~S~~aa~e~~~~~~r~~~vdFg~~yYv~~h~li~~ 105 (231)
T 2ozz_A 29 LYEGLASGLKAQFD---GIPFYYAHMRGADIRVECLLNGVYDMAVVSRLAAESYLSQNNLCIALELGPHTYVGEHQLICR 105 (231)
T ss_dssp HHHHHHHHHHHTTT---TSCEEEEECSCHHHHHHHHHTTSCSEEEEEHHHHHHHHHHSCEEEEEECCTTSSSCCEEEEEE
T ss_pred hhhHHHHHHHHHhc---CCcEEEEEccChHHHHHHHHcCCCCEEEEecccchhhhcccCeEEEEEcCCCccccCeEEEEe
Confidence 89999988888884 666334433 99999999999999 999999999999888888887
Q ss_pred cCCCCCCcEEecCCChhHHHHHHHHHHHHHHHHHhhhcccCCCCCCCccccchhHHHHHHHHHhhccccccccchhhHHH
Q 003821 436 AKAEQSPWIFIKPFTWGMWIVTGAILIYTMSVVWFLEHRWNPEFNGPWNIQIGTALWFTFSSLFFAHRERIYSNLTRLVV 515 (793)
Q Consensus 436 ~~~~~~~~~~l~PF~~~vWl~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~s~R~l~ 515 (793)
.+...
T Consensus 106 ~~~~~--------------------------------------------------------------------------- 110 (231)
T 2ozz_A 106 KGESG--------------------------------------------------------------------------- 110 (231)
T ss_dssp TTCGG---------------------------------------------------------------------------
T ss_pred CCCcc---------------------------------------------------------------------------
Confidence 77521
Q ss_pred HHHHHHHHHHHHHHHhhhheeeeeccCCCCCCChHHhhhCCCcccccCchHHHHHHHhhcCCCCcccccc-CCHHHHHHH
Q 003821 516 VVWLFVVLILNSSYTASLSSMLTVQRLKPNVTDIGWLKASNLNVGFDGDSFVRNYLENVLGFKPENILKV-DHEYKYITD 594 (793)
Q Consensus 516 ~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~ 594 (793)
.| .++|+..+|.-+..+.+... ....+..+ .+..+.+..
T Consensus 111 -----------------------------~i----------krVGvd~gS~dq~~lt~~~~-~g~~Ve~ve~~y~~~i~~ 150 (231)
T 2ozz_A 111 -----------------------------NV----------KRVGLDSRSADQKIMTDVFF-GDSDVERVDLSYHESLQR 150 (231)
T ss_dssp -----------------------------GC----------CEEEECTTCHHHHHHHHHHH-TTSCCEEEECCHHHHHHH
T ss_pred -----------------------------cc----------EEEEecCCChhHHHHHhhhc-CCCeEEEEECCHHHHHHH
Confidence 13 79999999977777777533 45556677 788999999
Q ss_pred hhcCceEEEEe--chhhHHHHHhccCCceEE--eCc---cccccceEEEecCCCc-ChHHHHHHH
Q 003821 595 FESNRIAAAFL--ELSYERAFLSQHCKEYTA--TIP---TYRFGGFAFVFQKGSP-LAADFSEAI 651 (793)
Q Consensus 595 l~~g~~~a~~~--~~~~~~~~~~~~c~~~~~--~~~---~~~~~~~~~~~~k~sp-l~~~in~~i 651 (793)
+.+|++||++. +.+... .+.+ +.. +.. ........++++||++ +++.+|+.|
T Consensus 151 L~~G~IDA~Iwn~d~~~a~----~~~~-l~~~~l~~~~~~~~~~eavI~v~k~n~~L~~~ln~~I 210 (231)
T 2ozz_A 151 IVKGDVDAVIWNVVAENEL----TMLG-LEATPLTDDPRFLQATEAVVLTRVDDYPMQQLLRAVV 210 (231)
T ss_dssp HHHTSCCEEEEEC-CHHHH----HHTT-EEEEECCSCHHHHHTTCEEEEEETTCHHHHHHHHHHC
T ss_pred HHcCCccEEEEcCcchhhh----cCCC-cceeccccccccccCCceEEEEECCCHHHHHHHHHHh
Confidence 99999999999 666655 2222 221 121 2234456689999975 888887654
No 76
>3p7i_A PHND, subunit of alkylphosphonate ABC transporter; phosphonate binding protein, transport protein; 1.71A {Escherichia coli UTI89} PDB: 3qk6_A 3quj_A* 3s4u_A
Probab=98.15 E-value=9.8e-06 Score=84.39 Aligned_cols=123 Identities=12% Similarity=0.108 Sum_probs=83.3
Q ss_pred CCCChHHhh--hCCCcccc-cCch----HHHHH-HHhhcCCCCcc--ccccCCHHHHHHHhhcCceEEEEechhhHHHHH
Q 003821 545 NVTDIGWLK--ASNLNVGF-DGDS----FVRNY-LENVLGFKPEN--ILKVDHEYKYITDFESNRIAAAFLELSYERAFL 614 (793)
Q Consensus 545 ~i~sl~dL~--~~~~~~g~-~~~~----~~~~~-l~~~~~~~~~~--~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~ 614 (793)
+|+|++||. ..+.++++ ..++ ....+ +....+..... ...+.+..+.+.+|.+|++|+.+.+......+.
T Consensus 113 ~i~sl~DL~~~~kgk~va~~~~gsts~~l~~~~~l~~~~Gi~~~~~~~v~~~~~~~a~~al~~G~vDa~~~~~~~~~~~~ 192 (321)
T 3p7i_A 113 PINNLNDLLAKRKDLTFGNGDPNSTSGFLVPGYYVFAKNNISASDFKRTVNAGHETNALAVANKQVDVATNNTENLDKLK 192 (321)
T ss_dssp SCCSHHHHHHTGGGCEEEECCTTCTTTTHHHHHHTTGGGTCCGGGSSEEEECCHHHHHHHHHTTSSSEEEEEHHHHHTHH
T ss_pred CCCCHHHHHhhcCCCEEEeCCCCccHHHHHHHHHHHHHcCCChhHceeeecCCHHHHHHHHHCCCceEEEechHHHHHHH
Confidence 589999992 22667764 2222 22222 22222332222 123456778999999999999999888877776
Q ss_pred hcc---CCceEEeCccccccceEEEecCCC-c-ChHHHHHHHHhhhccCchHHHHHHH
Q 003821 615 SQH---CKEYTATIPTYRFGGFAFVFQKGS-P-LAADFSEAILKLSENGELRSLEEKW 667 (793)
Q Consensus 615 ~~~---c~~~~~~~~~~~~~~~~~~~~k~s-p-l~~~in~~i~~l~e~G~~~~~~~~w 667 (793)
++. ...++++........++++++|+- + +++.++.+|..+.++|....+.+++
T Consensus 193 ~~~p~~~~~lrvl~~s~~~p~~~i~~~k~~~~~l~~~l~~aL~~~~~d~~~~~~l~~~ 250 (321)
T 3p7i_A 193 TSAPEKLKELKVIWKSPLIPGDPIVWRKNLSETTKDKIYDFFMNYGKTPEEKAVLERL 250 (321)
T ss_dssp HHCHHHHTTEEEEEECSCBCCCEEEEETTSCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred HhCcchhccEEEEEEcCCCCCCceeeeCCCCHHHHHHHHHHHHhcCCCHHHHHHHHhc
Confidence 643 123666654444456789999994 4 9999999999999999888777765
No 77
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=97.06 E-value=0.0072 Score=62.39 Aligned_cols=144 Identities=15% Similarity=0.015 Sum_probs=94.6
Q ss_pred cceEEEEc-CCChhhHHHHHHhccCCCccEEeeeCCCCCCCCCCCCCCeEEEecCChHHHHHHHHHHHhhc--CceEEEE
Q 003821 5 KEVKVIVG-METWGAATMVADIGSRAQVPVLSFAEPAIAPPLTSTRWPFLVRMANSSAEQITCTAALVGSY--NWRKVII 81 (793)
Q Consensus 5 ~~V~aiiG-p~~s~~~~~va~i~~~~~iP~Is~~~~~~~~~l~~~~~~~~~r~~p~~~~~~~ai~~ll~~~--~w~~vai 81 (793)
++|.+||. |..+.........+...+||+|..... .+. . +.+..+.+++...++.+++++... |-++|++
T Consensus 56 ~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~~--~~~--~---~~~~~V~~d~~~~g~~a~~~L~~~~~G~~~I~~ 128 (313)
T 2h3h_A 56 EGVNGIAIAPSDPTAVIPTIKKALEMGIPVVTLDTD--SPD--S---GRYVYIGTDNYQAGYTAGLIMKELLGGKGKVVI 128 (313)
T ss_dssp TTCSEEEECCSSTTTTHHHHHHHHHTTCCEEEESSC--CTT--S---CCSCEEECCHHHHHHHHHHHHHHHHTSCSEEEE
T ss_pred cCCCEEEEeCCChHHHHHHHHHHHHCCCeEEEeCCC--CCC--c---ceeEEECcCHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 56777764 544443334445556789999988765 221 1 122346678888888888888776 9999999
Q ss_pred EEEcCC--CccccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcC--CceEEEEeccChHHHHHHH
Q 003821 82 IYEDDA--TNADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRT--ESRVFIILQSSLAMGIHLF 157 (793)
Q Consensus 82 i~~dd~--~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~vivvl~~~~~~~~~~l 157 (793)
|..+.. .. ....+.+++.+++.|+++..... ... ...+..+.+.++.+. .+++|+. .+...+..++
T Consensus 129 i~~~~~~~~~--~~R~~gf~~~l~~~g~~~~~~~~-~~~-----~~~~~~~~~~~~l~~~~~~~ai~~--~~d~~a~g~~ 198 (313)
T 2h3h_A 129 GTGSLTAMNS--LQRIQGFKDAIKDSEIEIVDILN-DEE-----DGARAVSLAEAALNAHPDLDAFFG--VYAYNGPAQA 198 (313)
T ss_dssp EESCSSCHHH--HHHHHHHHHHHTTSSCEEEEEEE-CSS-----CHHHHHHHHHHHHHHCTTCCEEEE--CSTTHHHHHH
T ss_pred EECCCCCccH--HHHHHHHHHHhcCCCCEEEEeec-CCC-----CHHHHHHHHHHHHHHCcCceEEEE--cCCCccHHHH
Confidence 987633 23 45677888999999988764322 111 123445556665544 4577665 5566788899
Q ss_pred HHHHHcCC
Q 003821 158 REAKEMGL 165 (793)
Q Consensus 158 ~~a~~~g~ 165 (793)
+++++.|+
T Consensus 199 ~al~~~G~ 206 (313)
T 2h3h_A 199 LVVKNAGK 206 (313)
T ss_dssp HHHHHTTC
T ss_pred HHHHHcCC
Confidence 99999994
No 78
>2qpq_A Protein BUG27; alpha/beta domain, venus flytrap, transport protein; HET: CIT; 1.92A {Bordetella pertussis}
Probab=96.83 E-value=0.01 Score=60.69 Aligned_cols=122 Identities=13% Similarity=0.108 Sum_probs=80.4
Q ss_pred CCCChHHhhh------CCCcccccC-chHHH---HHHHhhcCCCCccccccCCHHHHHHHhhcCceEEEEechhhHHHHH
Q 003821 545 NVTDIGWLKA------SNLNVGFDG-DSFVR---NYLENVLGFKPENILKVDHEYKYITDFESNRIAAAFLELSYERAFL 614 (793)
Q Consensus 545 ~i~sl~dL~~------~~~~~g~~~-~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~ 614 (793)
+++|++||.. .++.+|... ++..+ ..+.+..+.+ .....|....+.+.+|..|++|+.+.+......++
T Consensus 113 ~~~sl~dL~~~ak~~p~~~~~g~~g~Gs~~hl~~~~l~~~~G~~-~~~Vpy~g~~~a~~al~~G~vD~~~~~~~~~~~~i 191 (301)
T 2qpq_A 113 KYKTLGELMAAAKQTNTQVTYGSCGNGTPQHLAGELLNVSAKTH-MVHVPYKGCGPALNDVLGSQIGLAVVTASSAIPFI 191 (301)
T ss_dssp SCCSHHHHHHHTCSSSCCCEEEESSTTSHHHHHHHHHHHHHTCC-CEEEECSSHHHHHHHHHTTSSSCEEEEHHHHHHHH
T ss_pred CCCCHHHHHHHHHhCCCceEEecCCCCcHHHHHHHHHHHHhCCC-eEEeccCChHHHHHHHHCCCccEEEEcHHHHHHHH
Confidence 5899999964 346777753 33222 2344333433 23457888899999999999999998866665444
Q ss_pred hcc-CCceEEeCc----------cc---------cccceEEEecCCCc--ChHHHHHHHHhhhccCchHHHHHHH
Q 003821 615 SQH-CKEYTATIP----------TY---------RFGGFAFVFQKGSP--LAADFSEAILKLSENGELRSLEEKW 667 (793)
Q Consensus 615 ~~~-c~~~~~~~~----------~~---------~~~~~~~~~~k~sp--l~~~in~~i~~l~e~G~~~~~~~~w 667 (793)
+.. .+.+-+.++ .+ ....++++.|+|-| +...+++++.++.+++.+++..+++
T Consensus 192 ~~g~lr~Lav~~~~r~~~~pdvPt~~e~G~~~~~~~~w~gl~ap~g~p~~vv~~l~~al~~~~~~~~~~~~~~~~ 266 (301)
T 2qpq_A 192 KAGKLQALAVTSKERSALLPEVPTVAEQGVAGYELNQWHGLLVPGATPMAVRQKLYDGIAKVMQRDDVQKKLADL 266 (301)
T ss_dssp HTTSEEEEEECSSSCCTTCTTSCBSGGGTCTTCCCEEEEEEEEETTCCHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hcCCeEEEEEcCCccccccCCCCChHHhCCCceEEEeEEEEEecCCCCHHHHHHHHHHHHHHHcCHHHHHHHHHC
Confidence 431 111111110 01 11246889999965 9999999999999999888776665
No 79
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=96.81 E-value=0.0065 Score=62.00 Aligned_cols=155 Identities=14% Similarity=0.088 Sum_probs=97.0
Q ss_pred ccceEEEEcCCChhhHHHHHHhccC-CCccEEeeeCCCCCCCCCCCCCCeEEEecCChHHHHHHHHHHHhhcCceEEEEE
Q 003821 4 EKEVKVIVGMETWGAATMVADIGSR-AQVPVLSFAEPAIAPPLTSTRWPFLVRMANSSAEQITCTAALVGSYNWRKVIII 82 (793)
Q Consensus 4 ~~~V~aiiGp~~s~~~~~va~i~~~-~~iP~Is~~~~~~~~~l~~~~~~~~~r~~p~~~~~~~ai~~ll~~~~w~~vaii 82 (793)
+.+|.+||..........+ ..+.. .++|+|..... .+. . .+..+..++...+..+++++...|.++|++|
T Consensus 75 ~~~vdgii~~~~~~~~~~~-~~l~~~~~iPvV~~~~~--~~~---~---~~~~V~~d~~~~~~~a~~~l~~~G~~~I~~i 145 (296)
T 3brq_A 75 DLRCDAIMIYPRFLSVDEI-DDIIDAHSQPIMVLNRR--LRK---N---SSHSVWCDHKQTSFNAVAELINAGHQEIAFL 145 (296)
T ss_dssp HTTCSEEEEECSSSCHHHH-HHHHHTCSSCEEEESCC--CSS---S---GGGEECCCHHHHHHHHHHHHHHTTCCSEEEE
T ss_pred hcCCCEEEEecCCCChHHH-HHHHhcCCCCEEEEccc--cCC---C---CCCEEEEchHHHHHHHHHHHHHCCCceEEEE
Confidence 3568777753332222333 33445 79999988654 221 1 1234667777777888898877899999999
Q ss_pred EEcCC--CccccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcC--CceEEEEeccChHHHHHHHH
Q 003821 83 YEDDA--TNADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRT--ESRVFIILQSSLAMGIHLFR 158 (793)
Q Consensus 83 ~~dd~--~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~vivvl~~~~~~~~~~l~ 158 (793)
..+.. .+ ..-.+.+.+.+++.|+++.....+.... ...+....+.++.+. .+++|+. .+...+..+++
T Consensus 146 ~~~~~~~~~--~~R~~gf~~~l~~~g~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~ai~~--~~d~~a~g~~~ 217 (296)
T 3brq_A 146 TGSMDSPTS--IERLAGYKDALAQHGIALNEKLIANGKW----TPASGAEGVEMLLERGAKFSALVA--SNDDMAIGAMK 217 (296)
T ss_dssp CCCTTCHHH--HHHHHHHHHHHHTTTCCCCGGGEECCCS----SHHHHHHHHHHHHTC--CCSEEEE--SSHHHHHHHHH
T ss_pred cCCCCCccH--HHHHHHHHHHHHHcCCCCChhhEEeCCC----ChhHHHHHHHHHHhCCCCCCEEEE--CChHHHHHHHH
Confidence 87643 33 5557778899999998754322222111 123344556665443 5787665 56777888999
Q ss_pred HHHHcCCCCCCeEEEEe
Q 003821 159 EAKEMGLVGPDSVWVIA 175 (793)
Q Consensus 159 ~a~~~g~~~~~~~wi~~ 175 (793)
++++.|+.-++-+-+++
T Consensus 218 al~~~g~~vP~di~vvg 234 (296)
T 3brq_A 218 ALHERGVAVPEQVSVIG 234 (296)
T ss_dssp HHHHHTCCTTTTCEEEE
T ss_pred HHHHcCCCCCCceEEEe
Confidence 99999987543333443
No 80
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=96.81 E-value=0.017 Score=60.17 Aligned_cols=150 Identities=12% Similarity=-0.026 Sum_probs=95.4
Q ss_pred eEEEEcC-CChhhHHHHHHhccCCCccEEeeeCCCCCCCCCCCC-C-CeEEEecCChHHHHHHHHHHHhh--cCceEEEE
Q 003821 7 VKVIVGM-ETWGAATMVADIGSRAQVPVLSFAEPAIAPPLTSTR-W-PFLVRMANSSAEQITCTAALVGS--YNWRKVII 81 (793)
Q Consensus 7 V~aiiGp-~~s~~~~~va~i~~~~~iP~Is~~~~~~~~~l~~~~-~-~~~~r~~p~~~~~~~ai~~ll~~--~~w~~vai 81 (793)
|.+||.. ............+...+||+|..... .+...... . +.+..+..++...+..++++|.. .|-++|++
T Consensus 64 vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~~--~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~~~G~~~I~~ 141 (332)
T 2rjo_A 64 NLVLNVDPNDSADARVIVEACSKAGAYVTTIWNK--PKDLHPWDYNPNYVAHLSYDGVAYGEETATQLFKSMGGKGGVVA 141 (332)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHTCEEEEESCC--CTTCCGGGGTTTEEEEEECCHHHHHHHHHHHHHHHTTTCEEEEE
T ss_pred CCEEEEeCCCHHHHHHHHHHHHHCCCeEEEECCC--CCcccchhcccceeEEEccChHHHHHHHHHHHHHHcCCCCeEEE
Confidence 8887753 33332223445555679999988765 22211111 1 34557788888888888898877 69999999
Q ss_pred EEEcCCCccccccHHHHHHHHHhc-CceeeEEeecCCCCCCCCChHHHHHHHHHhhcC---CceEEEEeccChHHHHHHH
Q 003821 82 IYEDDATNADTGNLALLSEALQIS-NSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRT---ESRVFIILQSSLAMGIHLF 157 (793)
Q Consensus 82 i~~dd~~G~~~~~~~~l~~~l~~~-g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~vivvl~~~~~~~~~~l 157 (793)
|...........-.+.+.+.+++. |+++..... ... ...+....+.++.+. .+++|+. .+...+..++
T Consensus 142 i~g~~~~~~~~~R~~Gf~~al~~~pgi~~~~~~~-~~~-----~~~~~~~~~~~ll~~~~~~~~aI~~--~nd~~A~g~~ 213 (332)
T 2rjo_A 142 LGGIFSNVPAIERKAGLDAALKKFPGIQLLDFQV-ADW-----NSQKAFPIMQAWMTRFNSKIKGVWA--ANDDMALGAI 213 (332)
T ss_dssp EECCTTCHHHHHHHHHHHHHHHTCTTEEEEEEEE-CTT-----CHHHHHHHHHHHHHHHGGGEEEEEE--SSHHHHHHHH
T ss_pred EECCCCCccHHHHHHHHHHHHHhCCCcEEEeecc-CCC-----CHHHHHHHHHHHHHhcCCCeeEEEE--CCCchHHHHH
Confidence 987643211145577788999998 887654321 111 123344455555443 4676554 6677788899
Q ss_pred HHHHHcCCC
Q 003821 158 REAKEMGLV 166 (793)
Q Consensus 158 ~~a~~~g~~ 166 (793)
+++++.|+.
T Consensus 214 ~al~~~G~~ 222 (332)
T 2rjo_A 214 EALRAEGLA 222 (332)
T ss_dssp HHHHHTTCB
T ss_pred HHHHHcCCC
Confidence 999999986
No 81
>2f5x_A BUGD; periplasmic binding protein, transport protein; 1.72A {Bordetella pertussis tohama I}
Probab=96.80 E-value=0.013 Score=60.20 Aligned_cols=122 Identities=11% Similarity=0.107 Sum_probs=80.4
Q ss_pred CCCChHHhhh------CCCcccccC-chHH---HHHHHhhcCCCCccccccCCHHHHHHHhhcCceEEEEechhhHHHHH
Q 003821 545 NVTDIGWLKA------SNLNVGFDG-DSFV---RNYLENVLGFKPENILKVDHEYKYITDFESNRIAAAFLELSYERAFL 614 (793)
Q Consensus 545 ~i~sl~dL~~------~~~~~g~~~-~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~ 614 (793)
+++|++||.. .++.+|... ++.. ...+.+..+.+ .....|....+.+.+|..|++|+.+........++
T Consensus 122 ~~~sl~dL~~~ak~~p~~~~~g~~g~Gs~~hl~~~~l~~~~Gi~-~~~Vpy~G~~~a~~aL~~G~VD~~~~~~~~~~~~i 200 (312)
T 2f5x_A 122 PPNNIKELAEYVKKNADKISLANAGIGAASHLCGTMLVEALGVN-LLTIPYKGTAPAMNDLLGKQVDLMCDQTTNTTQQI 200 (312)
T ss_dssp SCCSHHHHHHHHHHHGGGCEEEESSTTSHHHHHHHHHHHHHTCC-CEEEECSSHHHHHHHHHTTSSCEEEEEHHHHHHHH
T ss_pred CCCCHHHHHHHHHhCCCceEEeCCCCCcHHHHHHHHHHHHHCCC-eEEeccCChHHHHHHHHcCCccEEEechHHHHHHH
Confidence 6899999964 457888753 3322 22333333432 23457888899999999999999998876665554
Q ss_pred hcc-CCceEEeC--------c--ccc---------ccceEEEecCCCc--ChHHHHHHHHhhhccCchHHHHHHH
Q 003821 615 SQH-CKEYTATI--------P--TYR---------FGGFAFVFQKGSP--LAADFSEAILKLSENGELRSLEEKW 667 (793)
Q Consensus 615 ~~~-c~~~~~~~--------~--~~~---------~~~~~~~~~k~sp--l~~~in~~i~~l~e~G~~~~~~~~w 667 (793)
+.. .+.+-+.+ + .+. ...++++.|+|-| +...+++++.++.+++.+++..+++
T Consensus 201 ~~g~lr~Lav~~~~r~~~~pdvPt~~E~G~~~~~~~~w~gl~ap~g~p~~vv~~l~~al~~~~~~p~~~~~~~~~ 275 (312)
T 2f5x_A 201 TSGKVKAYAVTSLKRVPTLPDLPTMDESGYKGFEVGIWHGMWAPKGTPKPVVDKLVKSLQAGLADPKFQERMKQL 275 (312)
T ss_dssp HTTSSEEEEECSSSCCTTSTTSCBTTTTTCTTCCCEEEEEEEEETTCCHHHHHHHHHHHHHHHTCHHHHHHHHHT
T ss_pred HcCCeEEEEEcCccchhhcCCCCCHhhcCCCCeeEEEEEEEEEcCCCCHHHHHHHHHHHHHHHcCHHHHHHHHHC
Confidence 432 12122211 0 111 1236889999965 9999999999999999877666554
No 82
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=96.79 E-value=0.0089 Score=60.32 Aligned_cols=155 Identities=12% Similarity=0.037 Sum_probs=95.0
Q ss_pred ccceEEEEcCCChhhHHHHHHhccCCCccEEeeeCCCCCCCCCCCCCCeEEEecCChHHHHHHHHHHHhhcCceEEEEEE
Q 003821 4 EKEVKVIVGMETWGAATMVADIGSRAQVPVLSFAEPAIAPPLTSTRWPFLVRMANSSAEQITCTAALVGSYNWRKVIIIY 83 (793)
Q Consensus 4 ~~~V~aiiGp~~s~~~~~va~i~~~~~iP~Is~~~~~~~~~l~~~~~~~~~r~~p~~~~~~~ai~~ll~~~~w~~vaii~ 83 (793)
+.+|.+||........ .....+...++|+|..... .+ . +..+..++...++.+++++...|-+++++|.
T Consensus 53 ~~~vdgiI~~~~~~~~-~~~~~~~~~~iPvV~~~~~--~~---~-----~~~V~~d~~~~~~~a~~~L~~~G~~~i~~i~ 121 (276)
T 2h0a_A 53 AYLTDGLILASYDLTE-RFEEGRLPTERPVVLVDAQ--NP---R-----YDSVYLDNRLGGRLAGAYLARFPGPIFAIAV 121 (276)
T ss_dssp -CCCSEEEEESCCCC-------CCSCSSCEEEESSC--CT---T-----SEEEEECSHHHHHHHHHHHTTSSSCEEEEEE
T ss_pred hCCCCEEEEecCCCCH-HHHHHHhhcCCCEEEEecc--CC---C-----CCEEEEccHHHHHHHHHHHHHcCCCeEEEEe
Confidence 3567777643222222 3344566789999988654 22 1 3356778888888899999888999999998
Q ss_pred EcC-C---Ccccc-ccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcC--CceEEEEeccChHHHHHH
Q 003821 84 EDD-A---TNADT-GNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRT--ESRVFIILQSSLAMGIHL 156 (793)
Q Consensus 84 ~dd-~---~G~~~-~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~vivvl~~~~~~~~~~ 156 (793)
.+. . ..... .-.+.+.+.+++.|+++.....+.... ...+-...+.++.+. .+++|+ +++...+..+
T Consensus 122 ~~~~~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~ai~--~~~d~~a~g~ 195 (276)
T 2h0a_A 122 EEEPDRAFRRTVFAERMAGFQEALKEAGRPFSPDRLYITRH----SQEGGRLALRHFLEKASPPLNVF--AGADQVALGV 195 (276)
T ss_dssp CCSCCC---CCHHHHHHHHHHHHHHHTTCCCCGGGEEEECS----SHHHHHHHHHHHHTTCCSSEEEE--CSSHHHHHHH
T ss_pred cCcccccccchhHHHHHHHHHHHHHHcCCCCChHHeeecCC----ChHHHHHHHHHHHhCCCCCCEEE--ECCcHHHHHH
Confidence 764 3 21114 557788899999997653211111110 123344556665544 367654 4677788899
Q ss_pred HHHHHHcCCCCCCeEEEEe
Q 003821 157 FREAKEMGLVGPDSVWVIA 175 (793)
Q Consensus 157 l~~a~~~g~~~~~~~wi~~ 175 (793)
++++++.|+.-|+-+.+++
T Consensus 196 ~~al~~~g~~vP~di~vvg 214 (276)
T 2h0a_A 196 LEEAVRLGLTPGRDVRVLG 214 (276)
T ss_dssp HHHHHTTSCTTTTSEEEEE
T ss_pred HHHHHHcCCCCCCCeEEEE
Confidence 9999999987554444444
No 83
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=96.78 E-value=0.012 Score=59.80 Aligned_cols=156 Identities=15% Similarity=0.105 Sum_probs=95.5
Q ss_pred ccceEEEEcCCChhhHHHHHHhcc-CCCccEEeeeCCCCCCCCCCCCCCeEEEecCChHHHHHHHHHHHhhcCceEEEEE
Q 003821 4 EKEVKVIVGMETWGAATMVADIGS-RAQVPVLSFAEPAIAPPLTSTRWPFLVRMANSSAEQITCTAALVGSYNWRKVIII 82 (793)
Q Consensus 4 ~~~V~aiiGp~~s~~~~~va~i~~-~~~iP~Is~~~~~~~~~l~~~~~~~~~r~~p~~~~~~~ai~~ll~~~~w~~vaii 82 (793)
+.+|.+||........ .+.+.+. ..++|+|..... .+. . ++...+.+++...+..+++++...|.++|++|
T Consensus 61 ~~~vdgii~~~~~~~~-~~~~~l~~~~~iPvV~~~~~--~~~---~--~~~~~V~~d~~~~~~~~~~~L~~~G~~~i~~i 132 (289)
T 1dbq_A 61 QKRVDGLLVMCSEYPE-PLLAMLEEYRHIPMVVMDWG--EAK---A--DFTDAVIDNAFEGGYMAGRYLIERGHREIGVI 132 (289)
T ss_dssp HTTCSEEEEECSCCCH-HHHHHHHHTTTSCEEEEECS--SCC---S--SSCEEEEECHHHHHHHHHHHHHHTTCCSEEEE
T ss_pred hCCCCEEEEEeccCCH-HHHHHHHhccCCCEEEEccC--CCc---c--CcCCEEEeCcHHHHHHHHHHHHHCCCCeEEEE
Confidence 3567777642222111 2233333 379999998765 221 1 22335677788888888998888899999999
Q ss_pred EEcCC--CccccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcC--CceEEEEeccChHHHHHHHH
Q 003821 83 YEDDA--TNADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRT--ESRVFIILQSSLAMGIHLFR 158 (793)
Q Consensus 83 ~~dd~--~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~vivvl~~~~~~~~~~l~ 158 (793)
..+.. .+ ..-.+.+.+.+++.|+++.....+... ....+....+.++.+. .+++|+. .+...+..+++
T Consensus 133 ~~~~~~~~~--~~R~~g~~~~l~~~g~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~ai~~--~~d~~a~g~~~ 204 (289)
T 1dbq_A 133 PGPLERNTG--AGRLAGFMKAMEEAMIKVPESWIVQGD----FEPESGYRAMQQILSQPHRPTAVFC--GGDIMAMGALC 204 (289)
T ss_dssp CCC--------CHHHHHHHHHHHHTTCCCCGGGBCCCC----SSHHHHHHHHHHHHTSSSCCSEEEE--SCHHHHHHHHH
T ss_pred ecCCccccH--HHHHHHHHHHHHHCCCCCChHHeEeCC----CCHHHHHHHHHHHHhCCCCCCEEEE--CCcHHHHHHHH
Confidence 86533 33 566788999999999765322122111 1123344555665543 5787665 66778888999
Q ss_pred HHHHcCCCCCCeEEEEe
Q 003821 159 EAKEMGLVGPDSVWVIA 175 (793)
Q Consensus 159 ~a~~~g~~~~~~~wi~~ 175 (793)
++++.|+.-++-+-+++
T Consensus 205 al~~~G~~vP~di~vvg 221 (289)
T 1dbq_A 205 AADEMGLRVPQDVSLIG 221 (289)
T ss_dssp HHHHTTCCTTTTCEEEE
T ss_pred HHHHcCCCCCCceEEEe
Confidence 99999987543333333
No 84
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=96.78 E-value=0.021 Score=57.92 Aligned_cols=153 Identities=16% Similarity=0.183 Sum_probs=95.5
Q ss_pred ccceEEEEcCCChhhHHHHHHhccCCCccEEeeeCCCCCCCCCCCCCCeEEEecCChHHHHHHHHHHHhhcCceEEEEEE
Q 003821 4 EKEVKVIVGMETWGAATMVADIGSRAQVPVLSFAEPAIAPPLTSTRWPFLVRMANSSAEQITCTAALVGSYNWRKVIIIY 83 (793)
Q Consensus 4 ~~~V~aiiGp~~s~~~~~va~i~~~~~iP~Is~~~~~~~~~l~~~~~~~~~r~~p~~~~~~~ai~~ll~~~~w~~vaii~ 83 (793)
+.+|.+||..........+..+ . .++|+|..... .+. ...+ .+..++...+..+++++...|-++|++|.
T Consensus 62 ~~~vdgiI~~~~~~~~~~~~~l-~-~~iPvV~~~~~--~~~---~~~~---~V~~D~~~~g~~a~~~L~~~G~~~I~~i~ 131 (285)
T 3c3k_A 62 GKMVDGVITMDALSELPELQNI-I-GAFPWVQCAEY--DPL---STVS---SVSIDDVAASEYVVDQLVKSGKKRIALIN 131 (285)
T ss_dssp TTCCSEEEECCCGGGHHHHHHH-H-TTSSEEEESSC--CTT---SSSC---EEECCHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred hCCCCEEEEeCCCCChHHHHHH-h-cCCCEEEEccc--cCC---CCCC---EEEEChHHHHHHHHHHHHHcCCCeEEEEe
Confidence 4578887754332222333333 4 89999998654 221 1222 46677777778888888778999999998
Q ss_pred EcCCCccccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHH--hhcC--CceEEEEeccChHHHHHHHHH
Q 003821 84 EDDATNADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLK--LLRT--ESRVFIILQSSLAMGIHLFRE 159 (793)
Q Consensus 84 ~dd~~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~--l~~~--~~~vivvl~~~~~~~~~~l~~ 159 (793)
..........-.+.+.+.+++.|+++. ...-. .+ . .+-...+.+ +.+. .+++|+. .+...+..++++
T Consensus 132 ~~~~~~~~~~R~~gf~~~l~~~g~~~~-~~~~~-~~----~-~~~~~~~~~~~~l~~~~~~~ai~~--~~d~~A~g~~~a 202 (285)
T 3c3k_A 132 HDLAYQYAQHRESGYLNRLKFHGLDYS-RISYA-EN----L-DYMAGKLATFSLLKSAVKPDAIFA--ISDVLAAGAIQA 202 (285)
T ss_dssp CCTTSHHHHHHHHHHHHHHHHHTCCCC-EEEEC-SS----S-SHHHHHHHHHHHHSSSSCCSEEEE--SSHHHHHHHHHH
T ss_pred CCCccccHHHHHHHHHHHHHHcCCCce-EeecC-CC----h-HHHHHHHHHHHHHcCCCCCeEEEE--CCHHHHHHHHHH
Confidence 765421114456778889999998754 11111 11 1 223445555 5444 5777665 667788889999
Q ss_pred HHHcCCCCCCeEEEEe
Q 003821 160 AKEMGLVGPDSVWVIA 175 (793)
Q Consensus 160 a~~~g~~~~~~~wi~~ 175 (793)
+++.|+.-|+-+-+++
T Consensus 203 l~~~g~~vP~di~vvg 218 (285)
T 3c3k_A 203 LTESGLSIPQDVAVVG 218 (285)
T ss_dssp HHHTTCCTTTTCEEEC
T ss_pred HHHcCCCCCCceEEEE
Confidence 9999987554344444
No 85
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=96.65 E-value=0.02 Score=57.59 Aligned_cols=144 Identities=10% Similarity=0.033 Sum_probs=94.8
Q ss_pred eEEEEc-CCChhhHHHHHHhccCCCccEEeeeCCCCCCCCCCCCCCeEEEecCChHHHHHHHHHHHhhc----CceEEEE
Q 003821 7 VKVIVG-METWGAATMVADIGSRAQVPVLSFAEPAIAPPLTSTRWPFLVRMANSSAEQITCTAALVGSY----NWRKVII 81 (793)
Q Consensus 7 V~aiiG-p~~s~~~~~va~i~~~~~iP~Is~~~~~~~~~l~~~~~~~~~r~~p~~~~~~~ai~~ll~~~----~w~~vai 81 (793)
|.+||- |..+.........+...++|+|..... .+. . +....+.+++...++.+++++... |-+++++
T Consensus 60 vdgii~~~~~~~~~~~~~~~~~~~~ipvV~~~~~--~~~---~--~~~~~V~~d~~~~g~~~~~~l~~~~~~~G~~~i~~ 132 (276)
T 3ksm_A 60 PDALILAPNSAEDLTPSVAQYRARNIPVLVVDSD--LAG---D--AHQGLVATDNYAAGQLAARALLATLDLSKERNIAL 132 (276)
T ss_dssp CSEEEECCSSTTTTHHHHHHHHHTTCCEEEESSC--CSS---S--CSSEEEECCHHHHHHHHHHHHHHHSCTTSCEEEEE
T ss_pred CCEEEEeCCCHHHHHHHHHHHHHCCCcEEEEecC--CCC---C--CcceEEccCHHHHHHHHHHHHHHhcCcCCCceEEE
Confidence 777664 333445555666777889999998765 221 1 222346788888888899988777 8999999
Q ss_pred EEEcCCCccccccHHHHHHHHHhc-CceeeEEeecCCCCCCCCChHHHHHHHHHhhcC--CceEEEEeccChHHHHHHHH
Q 003821 82 IYEDDATNADTGNLALLSEALQIS-NSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRT--ESRVFIILQSSLAMGIHLFR 158 (793)
Q Consensus 82 i~~dd~~G~~~~~~~~l~~~l~~~-g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~vivvl~~~~~~~~~~l~ 158 (793)
+..+........-.+.+.+.+++. |+++... ..... ......+.+.++.+. .+++|+ +.+...+..+++
T Consensus 133 i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~-~~~~~-----~~~~~~~~~~~~l~~~~~~~ai~--~~~d~~a~g~~~ 204 (276)
T 3ksm_A 133 LRLRAGNASTDQREQGFLDVLRKHDKIRIIAA-PYAGD-----DRGAARSEMLRLLKETPTIDGLF--TPNESTTIGALV 204 (276)
T ss_dssp CBCCTTCHHHHHHHHHHHHHHTTCTTEEEEEC-CBCCS-----SHHHHHHHHHHHHHHCSCCCEEE--CCSHHHHHHHHH
T ss_pred EEcCCCchhHHHHHHHHHHHHHhCCCcEEEEE-ecCCC-----cHHHHHHHHHHHHHhCCCceEEE--ECCchhhhHHHH
Confidence 986543211155677888999888 8776522 11111 223445555555443 456644 366777888999
Q ss_pred HHHHcCC
Q 003821 159 EAKEMGL 165 (793)
Q Consensus 159 ~a~~~g~ 165 (793)
++++.|+
T Consensus 205 al~~~g~ 211 (276)
T 3ksm_A 205 AIRQSGM 211 (276)
T ss_dssp HHHHTTC
T ss_pred HHHHcCC
Confidence 9999998
No 86
>2dvz_A BUGE, putative exported protein; periplamsic binding proteins, carboxylate binding, glutamate, transport protein; HET: GLU; 2.30A {Bordetella pertussis}
Probab=96.63 E-value=0.013 Score=60.16 Aligned_cols=122 Identities=11% Similarity=0.129 Sum_probs=80.2
Q ss_pred CCCChHHhhh------CCCcccccC-chHH---HHHHHhhcCCCCccccccCCHHHHHHHhhcCceEEEEechhhHHHHH
Q 003821 545 NVTDIGWLKA------SNLNVGFDG-DSFV---RNYLENVLGFKPENILKVDHEYKYITDFESNRIAAAFLELSYERAFL 614 (793)
Q Consensus 545 ~i~sl~dL~~------~~~~~g~~~-~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~ 614 (793)
+++|++||.. .++.+|... ++.. -..+.+..+.+ .....|....+.+.+|..|++|+.+.......-++
T Consensus 126 ~~~tl~dL~~~ak~~p~~~~~g~~g~Gs~~hl~~~~l~~~~Gi~-~~~Vpy~G~~~a~~al~~G~vD~~~~~~~~~~~~i 204 (314)
T 2dvz_A 126 PAKDFKGFLEELKKNPGKYSYGSSGTCGVLHLMGESFKMATGTD-IVHVPYKGSGPAVADAVGGQIELIFDNLPSSMPQI 204 (314)
T ss_dssp SCSSHHHHHHHHHTSTTTCEEEESCTTSHHHHHHHHHHHHHTCC-CEEEECSSHHHHHHHHHHTSSSEEEEEHHHHHHHH
T ss_pred CCCCHHHHHHHHHhCCCcEEEeCCCCCcHHHHHHHHHHHHhCCC-eEEcccCCHHHHHHHHHcCCceEEEEcHHHHHHHH
Confidence 5899999963 347787753 3322 22344433433 23457888899999999999999998776665444
Q ss_pred hc-cCCceEEeCc----------ccc---------ccceEEEecCCCc--ChHHHHHHHHhhhccCchHHHHHHH
Q 003821 615 SQ-HCKEYTATIP----------TYR---------FGGFAFVFQKGSP--LAADFSEAILKLSENGELRSLEEKW 667 (793)
Q Consensus 615 ~~-~c~~~~~~~~----------~~~---------~~~~~~~~~k~sp--l~~~in~~i~~l~e~G~~~~~~~~w 667 (793)
+. ..+.+-+.++ .+. ...++++.|+|-| ....+++++.++.+++.+++..+++
T Consensus 205 ~~g~lr~Lav~~~~r~~~~pdvPt~~e~G~~~~~~~~w~gl~ap~g~p~~vv~~l~~al~~~~~~p~~~~~~~~~ 279 (314)
T 2dvz_A 205 QAGKLRAMAIAWPTRIDAIKDVPTFADAGFPVLNQPVWYGLLAPKGTPMDVVNKLRDAAVVALKDPKVIKALDDQ 279 (314)
T ss_dssp HTTSSEEEEEESSSCCGGGTTSCBTTTTTCGGGCCCEEEEEEEETTCCHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HcCCEEEEEecCccccccCCCCCCHHhcCCCceEEeEEEEEEEcCCCCHHHHHHHHHHHHHHHcCHHHHHHHHHC
Confidence 43 2121222110 010 1236889999965 9999999999999999888766655
No 87
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=96.58 E-value=0.024 Score=57.67 Aligned_cols=156 Identities=8% Similarity=0.062 Sum_probs=96.8
Q ss_pred ccceEEEEcCCChhhHHHHHHhccCCCccEEeeeCCCCCCCCCCCCCCeEEEecCChHHHHHHHHHHHhhcCceEEEEEE
Q 003821 4 EKEVKVIVGMETWGAATMVADIGSRAQVPVLSFAEPAIAPPLTSTRWPFLVRMANSSAEQITCTAALVGSYNWRKVIIIY 83 (793)
Q Consensus 4 ~~~V~aiiGp~~s~~~~~va~i~~~~~iP~Is~~~~~~~~~l~~~~~~~~~r~~p~~~~~~~ai~~ll~~~~w~~vaii~ 83 (793)
+.+|.+||-.........+...+...++|+|..... .+. .. +..+..++...+..++++|...|.++|++|.
T Consensus 74 ~~~vdgii~~~~~~~~~~~~~~~~~~~iPvV~~~~~--~~~---~~---~~~V~~d~~~~~~~a~~~L~~~G~~~I~~i~ 145 (293)
T 2iks_A 74 QRQVDAIIVSTSLPPEHPFYQRWANDPFPIVALDRA--LDR---EH---FTSVVGADQDDAEMLAEELRKFPAETVLYLG 145 (293)
T ss_dssp HTTCSEEEECCSSCTTCHHHHTTTTSSSCEEEEESC--CCT---TT---CEEEEECHHHHHHHHHHHHHTSCCSSEEEEE
T ss_pred HcCCCEEEEeCCCCCcHHHHHHHHhCCCCEEEECCc--cCc---CC---CCEEEecCHHHHHHHHHHHHHCCCCEEEEEe
Confidence 356777764332222222334566789999998765 221 12 2346677777888888888888999999998
Q ss_pred EcCCCccccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcC--CceEEEEeccChHHHHHHHHHHH
Q 003821 84 EDDATNADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRT--ESRVFIILQSSLAMGIHLFREAK 161 (793)
Q Consensus 84 ~dd~~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~vivvl~~~~~~~~~~l~~a~ 161 (793)
..........-.+.+.+.+++.|.+.... +.... ...+-...+.++.+. .+++|+. .+...+..++++++
T Consensus 146 ~~~~~~~~~~R~~Gf~~~l~~~g~~~~~~--~~~~~----~~~~~~~~~~~~l~~~~~~~ai~~--~~d~~a~g~~~al~ 217 (293)
T 2iks_A 146 ALPELSVSFLREQGFRTAWKDDPREVHFL--YANSY----EREAAAQLFEKWLETHPMPQALFT--TSFALLQGVMDVTL 217 (293)
T ss_dssp ECTTSHHHHHHHHHHHHHHTTCCCCEEEE--EESSS----CHHHHHHHHHHHTTTSCCCSEEEE--SSHHHHHHHHHHHH
T ss_pred cCcccccHHHHHHHHHHHHHHcCCCccEE--EcCCC----ChhhHHHHHHHHHhcCCCCCEEEE--CChHHHHHHHHHHH
Confidence 86442111455677888999998743222 11111 123344556666544 4777655 66777888999999
Q ss_pred HcCCCCCCeEEEEe
Q 003821 162 EMGLVGPDSVWVIA 175 (793)
Q Consensus 162 ~~g~~~~~~~wi~~ 175 (793)
+.|+.-|+-+-+++
T Consensus 218 ~~g~~vP~di~vvg 231 (293)
T 2iks_A 218 RRDGKLPSDLAIAT 231 (293)
T ss_dssp HHHSSCCSSCEEEE
T ss_pred HcCCCCCCceEEEE
Confidence 99987544344444
No 88
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=96.57 E-value=0.0016 Score=54.76 Aligned_cols=75 Identities=12% Similarity=-0.017 Sum_probs=60.7
Q ss_pred HHHHHHHHhhhcccCCCCCCCccccchhHHHHHHHHHhhcc-cc-ccccchhhHHHHHHHHHHHHHHHHHHhhhheeeee
Q 003821 462 IYTMSVVWFLEHRWNPEFNGPWNIQIGTALWFTFSSLFFAH-RE-RIYSNLTRLVVVVWLFVVLILNSSYTASLSSMLTV 539 (793)
Q Consensus 462 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~-~~~s~s~R~l~~~w~~~~lil~~~Yta~L~s~Lt~ 539 (793)
++.+++++.+|+..+. ....++.+++|+++.++...| ++ .|.+..+|++.++|.++++.+.+...+.+++.++.
T Consensus 20 ~~~a~~~~~~E~~~~~----~~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~l~G~~~~~~~~~~i~~~~~~ 95 (103)
T 2k1e_A 20 EEASKKAVEAERGAPG----AALISYPDAIWWSVETATTVGYGDRYPVTEEGRKVAEQVMKAGIEVFALVTAALATDFVR 95 (103)
T ss_dssp HHHHHHHHHHHTTSTT----CCCCCGGGTTTTTTGGGGCCSCCSSCCCSSSCTHHHHHHHHHHHHHHHHTHHHHHTTGGG
T ss_pred HHHHHhhhhhccCCCC----cccccHHHHHHHHHHHHhcccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667778876432 223468999999999999888 66 47999999999999999999999999999998865
Q ss_pred c
Q 003821 540 Q 540 (793)
Q Consensus 540 ~ 540 (793)
.
T Consensus 96 ~ 96 (103)
T 2k1e_A 96 R 96 (103)
T ss_dssp H
T ss_pred H
Confidence 4
No 89
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=96.56 E-value=0.0042 Score=53.87 Aligned_cols=74 Identities=19% Similarity=0.134 Sum_probs=59.8
Q ss_pred HHHHHHHhhhcccCCCCCCCccccchhHHHHHHHHHhhcc-cc-ccccchhhHHHHHHHHHHHHHHHHHHhhhheeeeec
Q 003821 463 YTMSVVWFLEHRWNPEFNGPWNIQIGTALWFTFSSLFFAH-RE-RIYSNLTRLVVVVWLFVVLILNSSYTASLSSMLTVQ 540 (793)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~-~~~s~s~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~ 540 (793)
+.+.+++.+|+..+ ++...++.+++|+++.++...| ++ .|.+..+|++.++|.++++.+.+...+.+++.++..
T Consensus 42 ~~a~~~~~~E~~~~----~~~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~Gi~~~~~~~~~i~~~~~~~ 117 (122)
T 2ih3_C 42 AGSYLAVLAERGAP----GAQLITYPRALWWACETATTVAYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGR 117 (122)
T ss_dssp HHHHHHHHHHTTST----TCCCCSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhheeeecCC----CCccCccccchhheeeeeeeeecCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677776532 2233468999999999999888 66 479999999999999999999999999999987643
No 90
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=96.56 E-value=0.03 Score=56.82 Aligned_cols=147 Identities=13% Similarity=0.015 Sum_probs=93.1
Q ss_pred cceEEEEcC-CChhhHHHHHHhccCCCccEEeeeCCCCCCCCCCCCCCeEEEecCChHHHHHHHHHHHhhc-C-ceEEEE
Q 003821 5 KEVKVIVGM-ETWGAATMVADIGSRAQVPVLSFAEPAIAPPLTSTRWPFLVRMANSSAEQITCTAALVGSY-N-WRKVII 81 (793)
Q Consensus 5 ~~V~aiiGp-~~s~~~~~va~i~~~~~iP~Is~~~~~~~~~l~~~~~~~~~r~~p~~~~~~~ai~~ll~~~-~-w~~vai 81 (793)
.+|.+||.. ............+...++|+|..... .+. .+.+..+.+++...++.+++++... | -++|++
T Consensus 64 ~~vdgii~~~~~~~~~~~~~~~~~~~~iPvV~~~~~--~~~-----~~~~~~V~~D~~~~g~~~~~~L~~~~G~~~~i~~ 136 (289)
T 3brs_A 64 RKPDVILLAAADYEKTYDAAKEIKDAGIKLIVIDSG--MKQ-----DIADITVATDNIQAGIRIGAVTKNLVRKSGKIGV 136 (289)
T ss_dssp TCCSEEEECCSCTTTTHHHHTTTGGGTCEEEEESSC--CSS-----CCCSEEEECCHHHHHHHHHHHHHHHTSSSCEEEE
T ss_pred hCCCEEEEeCCChHHhHHHHHHHHHCCCcEEEECCC--CCC-----CcceEEEeeChHHHHHHHHHHHHHHcCCCceEEE
Confidence 567777753 33332223445556689999988654 221 1223467788888888888888764 6 999999
Q ss_pred EEEcCCCccccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcC--CceEEEEeccChHHHHHHHHH
Q 003821 82 IYEDDATNADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRT--ESRVFIILQSSLAMGIHLFRE 159 (793)
Q Consensus 82 i~~dd~~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~vivvl~~~~~~~~~~l~~ 159 (793)
|..+........-.+.+.+.+++.|..+.... .... ...+....+.++.+. .+++|+. .+...+..++++
T Consensus 137 i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~-~~~~-----~~~~~~~~~~~~l~~~~~~~ai~~--~~d~~a~g~~~a 208 (289)
T 3brs_A 137 ISFVKNSKTAMDREEGLKIGLSDDSNKIEAIY-YCDS-----NYDKAYDGTVELLTKYPDISVMVG--LNQYSATGAARA 208 (289)
T ss_dssp EESCTTSHHHHHHHHHHHHHHGGGGGGEEEEE-ECTT-----CHHHHHHHHHHHHHHCTTEEEEEE--SSHHHHHHHHHH
T ss_pred EECCCCCccHHHHHHHHHHHHHhCCCcEEeee-cCCC-----CHHHHHHHHHHHHHhCCCceEEEE--CCCcchHHHHHH
Confidence 98764321114556778889999887643322 1211 123344555555443 4666554 667778889999
Q ss_pred HHHcCCC
Q 003821 160 AKEMGLV 166 (793)
Q Consensus 160 a~~~g~~ 166 (793)
+++.|+.
T Consensus 209 l~~~G~~ 215 (289)
T 3brs_A 209 IKDMSLE 215 (289)
T ss_dssp HHHTTCT
T ss_pred HHhcCCC
Confidence 9999986
No 91
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=96.54 E-value=0.0054 Score=62.43 Aligned_cols=157 Identities=11% Similarity=0.082 Sum_probs=95.6
Q ss_pred ccceEEEEcCCChhhHHHHHHhccCCCccEEeeeCCCCCCCCCCCCCCeEEEecCChHHHHHHHHHHHhhcCceEEEEEE
Q 003821 4 EKEVKVIVGMETWGAATMVADIGSRAQVPVLSFAEPAIAPPLTSTRWPFLVRMANSSAEQITCTAALVGSYNWRKVIIIY 83 (793)
Q Consensus 4 ~~~V~aiiGp~~s~~~~~va~i~~~~~iP~Is~~~~~~~~~l~~~~~~~~~r~~p~~~~~~~ai~~ll~~~~w~~vaii~ 83 (793)
+.+|.+||..........+..+ .++|+|..... .+. . .+..+..++...+..+++++...|-++|++|.
T Consensus 61 ~~~vdgiI~~~~~~~~~~~~~l---~~iPvV~~~~~--~~~---~---~~~~V~~d~~~~g~~a~~~L~~~G~~~I~~i~ 129 (288)
T 2qu7_A 61 SQNVSAIILVPVKSKFQMKREW---LKIPIMTLDRE--LES---T---SLPSITVDNEEAAYIATKRVLESTCKEVGLLL 129 (288)
T ss_dssp HTTEEEEEECCSSSCCCCCGGG---GGSCEEEESCC--CSS---C---CCCEEEECHHHHHHHHHHHHHTSSCCCEEEEE
T ss_pred HcCccEEEEecCCCChHHHHHh---cCCCEEEEecc--cCC---C---CCCEEEECcHHHHHHHHHHHHHcCCCcEEEEe
Confidence 4578888764433222222222 78999988655 221 1 23356778888888889988888999999998
Q ss_pred EcCCCccccccHHHHHHHHHhcCceeeEEeecC-CCCCCCC---ChHHHHHHHHHhhcCCceEEEEeccChHHHHHHHHH
Q 003821 84 EDDATNADTGNLALLSEALQISNSEIEYRLVLP-PISYLTD---PKQFLQEKLLKLLRTESRVFIILQSSLAMGIHLFRE 159 (793)
Q Consensus 84 ~dd~~G~~~~~~~~l~~~l~~~g~~v~~~~~~~-~~~~~~~---~~~~~~~~l~~l~~~~~~vivvl~~~~~~~~~~l~~ 159 (793)
..........-.+.+.+.+++.|+++.....+. ... .+ ...+-...+.++.+..+++|+. .+...+..++++
T Consensus 130 ~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~ai~~--~~d~~a~g~~~a 205 (288)
T 2qu7_A 130 ANPNISTTIGRKNGYNKAISEFDLNVNPSLIHYSDQQ--LGTNAQIYSGYEATKTLLSKGIKGIVA--TNHLLLLGALQA 205 (288)
T ss_dssp CCTTSHHHHHHHHHHHHHHHHTTCCCCGGGEEECCSS--CSHHHHHHHHHHHHHHHHHTTCCEEEE--CSHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHHcCCCCCcceEEeccCC--ccccCCHHHHHHHHHHHHhcCCCEEEE--CCcHHHHHHHHH
Confidence 764321114556778889999998654221110 111 00 1122334445544447888665 567778889999
Q ss_pred HHHcCCCCCCeEEEEe
Q 003821 160 AKEMGLVGPDSVWVIA 175 (793)
Q Consensus 160 a~~~g~~~~~~~wi~~ 175 (793)
+++.|+.-|+-+.+++
T Consensus 206 l~~~g~~vP~di~vvg 221 (288)
T 2qu7_A 206 IKESEKEIKKDVIIVG 221 (288)
T ss_dssp HHHSSCCBTTTBEEEE
T ss_pred HHHhCCCCCCceEEEE
Confidence 9999986443333443
No 92
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=96.51 E-value=0.023 Score=57.65 Aligned_cols=148 Identities=9% Similarity=-0.008 Sum_probs=97.4
Q ss_pred cceEEEE-cCCChhhHHHHHHhccCCCccEEeeeCCCCCCCCCCCCCCeEEEecCChHHHHHHHHHHHhh--cCceEEEE
Q 003821 5 KEVKVIV-GMETWGAATMVADIGSRAQVPVLSFAEPAIAPPLTSTRWPFLVRMANSSAEQITCTAALVGS--YNWRKVII 81 (793)
Q Consensus 5 ~~V~aii-Gp~~s~~~~~va~i~~~~~iP~Is~~~~~~~~~l~~~~~~~~~r~~p~~~~~~~ai~~ll~~--~~w~~vai 81 (793)
.+|.+|| .|..+.........+...+||+|..... .+ .. +..+..++...+..+++++.. .|-+++++
T Consensus 60 ~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~~--~~----~~---~~~V~~D~~~~g~~~~~~l~~~~~g~~~i~~ 130 (291)
T 3l49_A 60 QKPDAIIEQLGNLDVLNPWLQKINDAGIPLFTVDTA--TP----HA---INNTTSNNYSIGAELALQMVADLGGKGNVLV 130 (291)
T ss_dssp HCCSEEEEESSCHHHHHHHHHHHHHTTCCEEEESCC--CT----TC---SEEEEECHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred cCCCEEEEeCCChhhhHHHHHHHHHCCCcEEEecCC--CC----Cc---CceEecChHHHHHHHHHHHHHHcCCCceEEE
Confidence 4677666 5666556666677778889999998765 22 11 235677888888888988877 89999999
Q ss_pred EEEcCCCccccccHHHHHHHHHhc-CceeeEEeecCCCCCCCCChHHHHHHHHHhhcC-----CceEEEEeccChHHHHH
Q 003821 82 IYEDDATNADTGNLALLSEALQIS-NSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRT-----ESRVFIILQSSLAMGIH 155 (793)
Q Consensus 82 i~~dd~~G~~~~~~~~l~~~l~~~-g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-----~~~vivvl~~~~~~~~~ 155 (793)
+...........-.+.+.+.+++. |+++.....+.... ...+.....+.++.+. .+++|+. .+...+..
T Consensus 131 i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~ai~~--~~d~~a~g 205 (291)
T 3l49_A 131 FNGFYSVPVCKIRYDQMKYVLEAFPDVKIIEPELRDVIP---NTIQSAYSNVTDMLTKYPNEGDVGAIWA--CWDVPMIG 205 (291)
T ss_dssp ECSCTTSHHHHHHHHHHHHHHHTCTTEEECSSCBCCCSS---SHHHHHHHHHHHHHHHCCSTTSCCEEEE--SSHHHHHH
T ss_pred EeCCCCCchHHHHHHHHHHHHHHCCCCEEEeeeccCCCC---CCHHHHHHHHHHHHHhCCCcCCcCEEEE--CCCchHHH
Confidence 976544321144567788899888 57643322222211 1123334455555443 4677654 67778888
Q ss_pred HHHHHHHcCCC
Q 003821 156 LFREAKEMGLV 166 (793)
Q Consensus 156 ~l~~a~~~g~~ 166 (793)
+++++++.|+.
T Consensus 206 ~~~al~~~g~~ 216 (291)
T 3l49_A 206 ATQALQAAGRT 216 (291)
T ss_dssp HHHHHHHTTCC
T ss_pred HHHHHHHcCCC
Confidence 99999999996
No 93
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=96.48 E-value=0.028 Score=57.00 Aligned_cols=155 Identities=9% Similarity=0.106 Sum_probs=99.7
Q ss_pred ccceEEEEcCCChhhHHHHHHhccCCCccEEeeeCCCCCCCCCCCCCCeEEEecCChHHHHHHHHHHHhhcCceEEEEEE
Q 003821 4 EKEVKVIVGMETWGAATMVADIGSRAQVPVLSFAEPAIAPPLTSTRWPFLVRMANSSAEQITCTAALVGSYNWRKVIIIY 83 (793)
Q Consensus 4 ~~~V~aiiGp~~s~~~~~va~i~~~~~iP~Is~~~~~~~~~l~~~~~~~~~r~~p~~~~~~~ai~~ll~~~~w~~vaii~ 83 (793)
+.+|.|||-.........+... ...++|+|..... .+ .. -.+..++..-+..+++++...|-++++++.
T Consensus 66 ~~~vdgiIi~~~~~~~~~~~~~-~~~~iPvV~~~~~--~~-----~~---~~V~~D~~~~~~~a~~~L~~~G~~~i~~i~ 134 (289)
T 3g85_A 66 ENSFDAAIIANISNYDLEYLNK-ASLTLPIILFNRL--SN-----KY---SSVNVDNYKMGEKASLLFAKKRYKSAAAIL 134 (289)
T ss_dssp TTCCSEEEESSCCHHHHHHHHH-CCCSSCEEEESCC--CS-----SS---EEEEECHHHHHHHHHHHHHHTTCCBCEEEE
T ss_pred ccCCCEEEEecCCcccHHHHHh-ccCCCCEEEECCC--CC-----CC---CEEEeCHHHHHHHHHHHHHHcCCCEEEEEe
Confidence 4567777643333333333333 4689999988765 22 12 246778888888899999888999999998
Q ss_pred EcCCCccccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcC--CceEEEEeccChHHHHHHHHHHH
Q 003821 84 EDDATNADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRT--ESRVFIILQSSLAMGIHLFREAK 161 (793)
Q Consensus 84 ~dd~~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~vivvl~~~~~~~~~~l~~a~ 161 (793)
.+........-.+.+.+.+++.|+.+.....+.... ..++....+.++.+. .+++|+. .+...+..++++++
T Consensus 135 ~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~ai~~--~~d~~a~g~~~al~ 208 (289)
T 3g85_A 135 TESLNDAMDNRNKGFIETCHKNGIKISENHIIAAEN----SIHGGVDAAKKLMKLKNTPKALFC--NSDSIALGVISVLN 208 (289)
T ss_dssp CCCSSHHHHHHHHHHHHHHHHTTCBCCGGGEEECCS----SHHHHHHHHHHHTTSSSCCSEEEE--SSHHHHHHHHHHHH
T ss_pred CCcccccHHHHHHHHHHHHHHcCCCCChhheeccCC----CHHHHHHHHHHHHcCCCCCcEEEE--cCCHHHHHHHHHHH
Confidence 765432114567788899999998654221111111 223445566666554 4777655 67778888999999
Q ss_pred HcCCCCCCeEEEEe
Q 003821 162 EMGLVGPDSVWVIA 175 (793)
Q Consensus 162 ~~g~~~~~~~wi~~ 175 (793)
+.|+.-|+-+-+++
T Consensus 209 ~~g~~vP~di~vig 222 (289)
T 3g85_A 209 KRQISIPDDIEIVA 222 (289)
T ss_dssp HTTCCTTTTCEEEE
T ss_pred HcCCCCCCceEEEE
Confidence 99997554444444
No 94
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=96.44 E-value=0.016 Score=58.88 Aligned_cols=158 Identities=13% Similarity=0.153 Sum_probs=100.1
Q ss_pred ccceEEEEcCCChhhHHHHHHhccCCCccEEeeeCCCCCCCCCCCCCCeEEEecCChHHHHHHHHHHHhhcCceEEEEEE
Q 003821 4 EKEVKVIVGMETWGAATMVADIGSRAQVPVLSFAEPAIAPPLTSTRWPFLVRMANSSAEQITCTAALVGSYNWRKVIIIY 83 (793)
Q Consensus 4 ~~~V~aiiGp~~s~~~~~va~i~~~~~iP~Is~~~~~~~~~l~~~~~~~~~r~~p~~~~~~~ai~~ll~~~~w~~vaii~ 83 (793)
+.+|.|||-....... .....+...++|+|..... .+.. ... ..+..++..-+..+++++...|-++++++.
T Consensus 67 ~~~vdgiIi~~~~~~~-~~~~~l~~~~iPvV~~~~~--~~~~--~~~---~~V~~D~~~~g~~a~~~L~~~G~~~i~~i~ 138 (292)
T 3k4h_A 67 GRQIGGIILLYSREND-RIIQYLHEQNFPFVLIGKP--YDRK--DEI---TYVDNDNYTAAREVAEYLISLGHKQIAFIG 138 (292)
T ss_dssp TTCCCEEEESCCBTTC-HHHHHHHHTTCCEEEESCC--SSCT--TTS---CEEECCHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred cCCCCEEEEeCCCCCh-HHHHHHHHCCCCEEEECCC--CCCC--CCC---CEEEECcHHHHHHHHHHHHHCCCceEEEEe
Confidence 3567776632222122 3455566789999988765 2211 112 246778888888899999888999999998
Q ss_pred EcCCCccccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcC--CceEEEEeccChHHHHHHHHHHH
Q 003821 84 EDDATNADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRT--ESRVFIILQSSLAMGIHLFREAK 161 (793)
Q Consensus 84 ~dd~~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~vivvl~~~~~~~~~~l~~a~ 161 (793)
..........-.+.+.+++++.|+.+.....+... .........+.++.+. .+++|+. .+...+..++++++
T Consensus 139 ~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~ai~~--~~d~~a~g~~~al~ 212 (292)
T 3k4h_A 139 GGSDLLVTRDRLAGMSDALKLADIVLPKEYILHFD----FSRESGQQAVEELMGLQQPPTAIMA--TDDLIGLGVLSALS 212 (292)
T ss_dssp SCTTBHHHHHHHHHHHHHHHHTTCCCCGGGEEECC----SSHHHHHHHHHHHHTSSSCCSEEEE--SSHHHHHHHHHHHH
T ss_pred CcccchhHHHHHHHHHHHHHHcCCCCChheEEecC----CCHHHHHHHHHHHHcCCCCCcEEEE--cChHHHHHHHHHHH
Confidence 76543211455778889999999865422111111 1223455566666554 5677665 67778889999999
Q ss_pred HcCCCCCCeEEEEe
Q 003821 162 EMGLVGPDSVWVIA 175 (793)
Q Consensus 162 ~~g~~~~~~~wi~~ 175 (793)
+.|+.-|+-+-+++
T Consensus 213 ~~g~~vP~di~vig 226 (292)
T 3k4h_A 213 KKGFVVPKDVSIVS 226 (292)
T ss_dssp HTTCCTTTTCEEEE
T ss_pred HhCCCCCCeEEEEE
Confidence 99997553333443
No 95
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=96.43 E-value=0.042 Score=56.91 Aligned_cols=147 Identities=9% Similarity=0.064 Sum_probs=91.6
Q ss_pred ccceEEEEcCCChhh-HHHHHHhccCCCccEEeeeCCCCCCCCCCCCCCeEEEecCChHHHHHHHHHHHhhc--CceEEE
Q 003821 4 EKEVKVIVGMETWGA-ATMVADIGSRAQVPVLSFAEPAIAPPLTSTRWPFLVRMANSSAEQITCTAALVGSY--NWRKVI 80 (793)
Q Consensus 4 ~~~V~aiiGp~~s~~-~~~va~i~~~~~iP~Is~~~~~~~~~l~~~~~~~~~r~~p~~~~~~~ai~~ll~~~--~w~~va 80 (793)
+.+|.+||....+.. .......+...++|+|..... .+. . +.+..+.+++...+..+++++... |-++|+
T Consensus 60 ~~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~~--~~~---~--~~~~~V~~D~~~~g~~a~~~L~~~~~G~~~I~ 132 (325)
T 2x7x_A 60 DEGVDLLIISANEAAPMTPIVEEAYQKGIPVILVDRK--ILS---D--KYTAYIGADNYEIGRSVGNYIASSLKGKGNIV 132 (325)
T ss_dssp HTTCSEEEECCSSHHHHHHHHHHHHHTTCCEEEESSC--CSS---S--CSSEEEEECHHHHHHHHHHHHHHHTTTEEEEE
T ss_pred HcCCCEEEEeCCCHHHHHHHHHHHHHCCCeEEEeCCC--CCC---c--ceeEEEecCHHHHHHHHHHHHHHHcCCCceEE
Confidence 357888775433322 223344555689999988654 221 1 123356677777888888888664 999999
Q ss_pred EEEEcCCCccccccHHHHHHHHHhc-CceeeEEeecCCCCCCCCChHHHHHHHHHhhcC--CceEEEEeccChHHHHHHH
Q 003821 81 IIYEDDATNADTGNLALLSEALQIS-NSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRT--ESRVFIILQSSLAMGIHLF 157 (793)
Q Consensus 81 ii~~dd~~G~~~~~~~~l~~~l~~~-g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~vivvl~~~~~~~~~~l 157 (793)
+|..+........-.+.+.+.+++. |+++... ..... ...+-...+.++.+. .+++|+. .+...+..++
T Consensus 133 ~i~~~~~~~~~~~R~~Gf~~al~~~pg~~~~~~-~~~~~-----~~~~~~~~~~~ll~~~~~~~aI~~--~nd~~A~g~~ 204 (325)
T 2x7x_A 133 ELTGLSGSTPAMERHQGFMAAISKFPDIKLIDK-ADAAW-----ERGPAEIEMDSMLRRHPKIDAVYA--HNDRIAPGAY 204 (325)
T ss_dssp EEESCTTSHHHHHHHHHHHHHHHTCTEEEEEEE-EECTT-----SHHHHHHHHHHHHHHCSCCCEEEE--SSTTHHHHHH
T ss_pred EEECCCCCccHHHHHHHHHHHHHhCCCCEEEee-ecCCC-----CHHHHHHHHHHHHHhCCCCCEEEE--CCCchHHHHH
Confidence 9987643211144567788899888 8776532 11111 123334445555433 5777665 5666788899
Q ss_pred HHHHHcCC
Q 003821 158 REAKEMGL 165 (793)
Q Consensus 158 ~~a~~~g~ 165 (793)
+++++.|+
T Consensus 205 ~al~~~Gi 212 (325)
T 2x7x_A 205 QAAKMAGR 212 (325)
T ss_dssp HHHHHTTC
T ss_pred HHHHHcCC
Confidence 99999996
No 96
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=96.43 E-value=0.048 Score=54.91 Aligned_cols=134 Identities=10% Similarity=0.039 Sum_probs=88.3
Q ss_pred hccCCCccEEeeeCCCCCCCCCCCCCCeEEEecCChHHHHHHHHHHHhhcCceEEEEEEEcCCCccccccHHHHHHHHHh
Q 003821 25 IGSRAQVPVLSFAEPAIAPPLTSTRWPFLVRMANSSAEQITCTAALVGSYNWRKVIIIYEDDATNADTGNLALLSEALQI 104 (793)
Q Consensus 25 i~~~~~iP~Is~~~~~~~~~l~~~~~~~~~r~~p~~~~~~~ai~~ll~~~~w~~vaii~~dd~~G~~~~~~~~l~~~l~~ 104 (793)
.+...++|+|..... .+. . .+..+..++...+..+++++...|-+++++|..+........-.+.+.+.+++
T Consensus 75 ~l~~~~iPvV~~~~~--~~~---~---~~~~V~~D~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~ 146 (277)
T 3cs3_A 75 KFAERGHSIVVLDRT--TEH---R---NIRQVLLDNRGGATQAIEQFVNVGSKKVLLLSGPEKGYDSQERLAVSTRELTR 146 (277)
T ss_dssp HHHHTTCEEEESSSC--CCS---T---TEEEEEECHHHHHHHHHHHHHHTTCSCEEEEECCTTSHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCEEEEecC--CCC---C---CCCEEEeCcHHHHHHHHHHHHHcCCceEEEEeCCccCccHHHHHHHHHHHHHH
Confidence 345589999987654 221 1 23456677777788888888888999999998764421114456778889999
Q ss_pred cCceeeEEeecCCCCCCCCChHHHHHHHHHhhcC---CceEEEEeccChHHHHHHHHHHHHcCCCCCCeEEEEe
Q 003821 105 SNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRT---ESRVFIILQSSLAMGIHLFREAKEMGLVGPDSVWVIA 175 (793)
Q Consensus 105 ~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~vivvl~~~~~~~~~~l~~a~~~g~~~~~~~wi~~ 175 (793)
.|+++. . ..... ...+-...+.++.+. .+++|+. .+...+..+++++++.|+.-|+-+.+++
T Consensus 147 ~g~~~~-~-~~~~~-----~~~~~~~~~~~~l~~~~~~~~ai~~--~~d~~a~g~~~al~~~g~~vP~di~vvg 211 (277)
T 3cs3_A 147 FGIPYE-I-IQGDF-----TEPSGYAAAKKILSQPQTEPVDVFA--FNDEMAIGVYKYVAETNYQMGKDIRIIG 211 (277)
T ss_dssp TTCCEE-E-EECCS-----SHHHHHHHHHHHTTSCCCSSEEEEE--SSHHHHHHHHHHHTTSSCCBTTTEEEEC
T ss_pred cCCCee-E-EeCCC-----ChhHHHHHHHHHHhcCCCCCcEEEE--cChHHHHHHHHHHHHcCCCCCCcEEEEE
Confidence 998765 2 11111 123344556666544 5677654 6777788899999999987554455554
No 97
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=96.42 E-value=0.027 Score=57.18 Aligned_cols=147 Identities=6% Similarity=-0.009 Sum_probs=89.1
Q ss_pred cceEEEEcC-CChhhHHHHHHhccCCCccEEeeeCCCCCCCCCCCCCCeEEEecCChHHHHHHHHHHHhhc------Cce
Q 003821 5 KEVKVIVGM-ETWGAATMVADIGSRAQVPVLSFAEPAIAPPLTSTRWPFLVRMANSSAEQITCTAALVGSY------NWR 77 (793)
Q Consensus 5 ~~V~aiiGp-~~s~~~~~va~i~~~~~iP~Is~~~~~~~~~l~~~~~~~~~r~~p~~~~~~~ai~~ll~~~------~w~ 77 (793)
.+|.+||.. ............+...++|+|..... .+. ....++ .+..++...++.+++++... |.+
T Consensus 57 ~~vdgiI~~~~~~~~~~~~~~~~~~~~iPvV~~~~~--~~~--~~~~~~--~V~~D~~~~~~~~~~~L~~~~g~~~~G~r 130 (290)
T 2fn9_A 57 AGYDAIIFNPTDADGSIANVKRAKEAGIPVFCVDRG--INA--RGLAVA--QIYSDNYYGGVLAGEYFVKFLKEKYPDAK 130 (290)
T ss_dssp TTCSEEEECCSCTTTTHHHHHHHHHTTCCEEEESSC--CSC--SSSSSE--EEEECHHHHHHHHHHHHHHHHHHHCSSCS
T ss_pred cCCCEEEEecCChHHHHHHHHHHHHCCCeEEEEecC--CCC--CCceEE--EEeCCHHHHHHHHHHHHHHHhcccCCccc
Confidence 567777753 33332223344456689999988754 221 111121 26677777788888888776 889
Q ss_pred E--EEEEEEcCCCccccccHHHHHHHHHhc-CceeeEEeecCCCCCCCCChHHHHHHHHHhhcC--CceEEEEeccChHH
Q 003821 78 K--VIIIYEDDATNADTGNLALLSEALQIS-NSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRT--ESRVFIILQSSLAM 152 (793)
Q Consensus 78 ~--vaii~~dd~~G~~~~~~~~l~~~l~~~-g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~vivvl~~~~~~ 152 (793)
+ ++++...........-.+.+.+.+++. |+++.... ....+ ..+-.+.+.++.+. .+++|+. .+...
T Consensus 131 ~i~i~~l~g~~~~~~~~~R~~gf~~~l~~~~g~~~~~~~-~~~~~-----~~~~~~~~~~ll~~~~~~~ai~~--~~d~~ 202 (290)
T 2fn9_A 131 EIPYAELLGILSAQPTWDRSNGFHSVVDQYPEFKMVAQQ-SAEFD-----RDTAYKVTEQILQAHPEIKAIWC--GNDAM 202 (290)
T ss_dssp CEEEEEEECCTTCHHHHHHHHHHHHHHTTSTTEEEEEEE-ECTTC-----HHHHHHHHHHHHHHCTTCCEEEE--SSHHH
T ss_pred ceeEEEEEcCCCCchHHHHHHHHHHHHHhCCCCEEEEec-cCCCC-----HHHHHHHHHHHHHhCCCCcEEEE--CCchH
Confidence 9 666665433211145577788899988 87764321 11111 23334455554433 5787665 66777
Q ss_pred HHHHHHHHHHcCC
Q 003821 153 GIHLFREAKEMGL 165 (793)
Q Consensus 153 ~~~~l~~a~~~g~ 165 (793)
+..+++++++.|+
T Consensus 203 a~g~~~al~~~g~ 215 (290)
T 2fn9_A 203 ALGAMKACEAAGR 215 (290)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCC
Confidence 8889999999998
No 98
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=96.42 E-value=0.015 Score=58.34 Aligned_cols=144 Identities=13% Similarity=0.073 Sum_probs=93.4
Q ss_pred cceEEEEc-CCChhhHHHHHHhccCCCccEEeeeCCCCCCCCCCCCCCeEEEecCChHHHHHHHHHHHhhcCceEEEEEE
Q 003821 5 KEVKVIVG-METWGAATMVADIGSRAQVPVLSFAEPAIAPPLTSTRWPFLVRMANSSAEQITCTAALVGSYNWRKVIIIY 83 (793)
Q Consensus 5 ~~V~aiiG-p~~s~~~~~va~i~~~~~iP~Is~~~~~~~~~l~~~~~~~~~r~~p~~~~~~~ai~~ll~~~~w~~vaii~ 83 (793)
.+|.+||- |.... .......+...++|+|..... .+. ... -.+..++...++.+++++...|-++++++.
T Consensus 57 ~~vdgiIi~~~~~~-~~~~~~~~~~~~iPvV~~~~~--~~~---~~~---~~V~~d~~~~~~~a~~~L~~~G~~~i~~i~ 127 (272)
T 3o74_A 57 RRCDALFVASCLPP-EDDSYRELQDKGLPVIAIDRR--LDP---AHF---CSVISDDRDASRQLAASLLSSAPRSIALIG 127 (272)
T ss_dssp TTCSEEEECCCCCS-SCCHHHHHHHTTCCEEEESSC--CCT---TTC---EEEEECHHHHHHHHHHHHHTTCCSEEEEEE
T ss_pred cCCCEEEEecCccc-cHHHHHHHHHcCCCEEEEccC--CCc---ccc---CEEEEchHHHHHHHHHHHHHCCCcEEEEEe
Confidence 46666653 33212 233344566679999988765 221 122 346677788888888999888999999998
Q ss_pred EcCCCccccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcC---CceEEEEeccChHHHHHHHHHH
Q 003821 84 EDDATNADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRT---ESRVFIILQSSLAMGIHLFREA 160 (793)
Q Consensus 84 ~dd~~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~vivvl~~~~~~~~~~l~~a 160 (793)
..........-.+.+.+.+++.|+++..... ...+ .++....+.++.+. .+++|+. .+...+..+++++
T Consensus 128 ~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~-~~~~-----~~~~~~~~~~~l~~~~~~~~ai~~--~~d~~a~g~~~al 199 (272)
T 3o74_A 128 ARPELSVSQARAGGFDEALQGYTGEVRRYQG-EAFS-----RECGQRLMQQLIDDLGGLPDALVT--TSYVLLQGVFDTL 199 (272)
T ss_dssp ECTTSHHHHHHHHHHHHHTTTCCSEEEEEEE-SSSS-----HHHHHHHHHHHHHHHTSCCSEEEE--SSHHHHHHHHHHH
T ss_pred cCCCCccHHHHHHHHHHHHHHcCCChheeec-CCCC-----HHHHHHHHHHHHhcCCCCCcEEEE--eCchHHHHHHHHH
Confidence 8755321155677888999999987543322 1111 23344455554433 4787665 6777888999999
Q ss_pred HHcCC
Q 003821 161 KEMGL 165 (793)
Q Consensus 161 ~~~g~ 165 (793)
++.|+
T Consensus 200 ~~~g~ 204 (272)
T 3o74_A 200 QARPV 204 (272)
T ss_dssp HTSCG
T ss_pred HHcCC
Confidence 99998
No 99
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=96.40 E-value=0.037 Score=55.56 Aligned_cols=138 Identities=17% Similarity=0.102 Sum_probs=89.0
Q ss_pred HhccCCCccEEeeeCCCCCCCCCCCCCCeEEEecCChHHHHHHHHHHHhhcCceEEEEEEEcCCCccccccHHHHHHHHH
Q 003821 24 DIGSRAQVPVLSFAEPAIAPPLTSTRWPFLVRMANSSAEQITCTAALVGSYNWRKVIIIYEDDATNADTGNLALLSEALQ 103 (793)
Q Consensus 24 ~i~~~~~iP~Is~~~~~~~~~l~~~~~~~~~r~~p~~~~~~~ai~~ll~~~~w~~vaii~~dd~~G~~~~~~~~l~~~l~ 103 (793)
..+...++|+|..... .+. . .+..+..++...+..+++++...|.++|++|..+........-.+.+.+.++
T Consensus 76 ~~l~~~~iPvV~~~~~--~~~---~---~~~~V~~d~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~ 147 (275)
T 3d8u_A 76 QLLEASNTPVLEIAEL--SSK---A---SYLNIGVDHFEVGKACTRHLIEQGFKNVGFIGARGNHSTLQRQLHGWQSAMI 147 (275)
T ss_dssp HHHHHHTCCEEEESSS--CSS---S---SSEEECBCHHHHHHHHHHHHHTTTCCCEEEEECSCSSHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCEEEEeec--cCC---C---CCCEEEEChHHHHHHHHHHHHHCCCCeEEEEcCCCCCchHHHHHHHHHHHHH
Confidence 3445579999987654 221 1 2235777777788888898888899999999876442111455777888999
Q ss_pred hcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcC--CceEEEEeccChHHHHHHHHHHHHcCCCCCCeEEEEe
Q 003821 104 ISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRT--ESRVFIILQSSLAMGIHLFREAKEMGLVGPDSVWVIA 175 (793)
Q Consensus 104 ~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~vivvl~~~~~~~~~~l~~a~~~g~~~~~~~wi~~ 175 (793)
+.|+++.....+.... ...+..+.+.++.+. .+++|+. .+...+..+++++++.|+.-|+-+.+++
T Consensus 148 ~~g~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~ai~~--~~d~~a~g~~~al~~~g~~vP~di~vvg 215 (275)
T 3d8u_A 148 ENYLTPDHFLTTHEAP----SSQLGAEGLAKLLLRDSSLNALVC--SHEEIAIGALFECHRRVLKVPTDIAIIC 215 (275)
T ss_dssp HTTCCCCCEEECSSCC----CHHHHHHHHHHHHTTCTTCCEEEE--SSHHHHHHHHHHHHHTTCCTTTTCEEEE
T ss_pred HcCCCCCccEEEeCCC----ChhHHHHHHHHHHhCCCCCCEEEE--cCcHHHHHHHHHHHHcCCCCCCceEEEe
Confidence 9997654332222111 223344555555443 4777665 6677788899999999986554344444
No 100
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=96.40 E-value=0.012 Score=60.31 Aligned_cols=151 Identities=9% Similarity=-0.021 Sum_probs=100.6
Q ss_pred cceEEEE-cCCChhhHHHHHHhccCCCccEEeeeCCCCCCCCCCCCCCeEEEecCChHHHHHHHHHHHhhcC--ceEEEE
Q 003821 5 KEVKVIV-GMETWGAATMVADIGSRAQVPVLSFAEPAIAPPLTSTRWPFLVRMANSSAEQITCTAALVGSYN--WRKVII 81 (793)
Q Consensus 5 ~~V~aii-Gp~~s~~~~~va~i~~~~~iP~Is~~~~~~~~~l~~~~~~~~~r~~p~~~~~~~ai~~ll~~~~--w~~vai 81 (793)
.+|.||| .|............+...+||+|..... .+.. ...+.+..+.+++...++.+++++...| -+++++
T Consensus 60 ~~vdgiii~~~~~~~~~~~~~~~~~~giPvV~~~~~--~~~~--~~~~~~~~V~~D~~~~g~~a~~~l~~~g~~~~~i~~ 135 (297)
T 3rot_A 60 TYPSGIATTIPSDTAFSKSLQRANKLNIPVIAVDTR--PKDK--TKNPYLVFLGSDNLLAGKKLGEKALELTPSAKRALV 135 (297)
T ss_dssp TCCSEEEECCCCSSTTHHHHHHHHHHTCCEEEESCC--CSCT--TTSCCSCEEECCHHHHHHHHHHHHHHHCTTCCEEEE
T ss_pred cCCCEEEEeCCCHHHHHHHHHHHHHCCCCEEEEcCC--Cccc--cccCcceEEccChHHHHHHHHHHHHHhcCCCceEEE
Confidence 4676665 5665555555666777789999998765 3221 1112334577888888889999888877 899999
Q ss_pred EEEcCCCccccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcC--CceEEEEeccChHHHHHHHHH
Q 003821 82 IYEDDATNADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRT--ESRVFIILQSSLAMGIHLFRE 159 (793)
Q Consensus 82 i~~dd~~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~vivvl~~~~~~~~~~l~~ 159 (793)
+..+........-.+.+++.+++.|+++.... .. +........+.++.+. .+++|+. .+...+..++++
T Consensus 136 i~g~~~~~~~~~R~~Gf~~~l~~~g~~~~~~~--~~-----~~~~~~~~~~~~~l~~~~~~~ai~~--~~d~~A~g~~~a 206 (297)
T 3rot_A 136 LNPQPGHIGLEKRAYGIKTILQDKGIFFEELD--VG-----TDPNQVQSRVKSYFKIHPETNIIFC--LTSQALDPLGQM 206 (297)
T ss_dssp EESCTTCHHHHHHHHHHHHHHHHTTCEEEEEE--CC-----SCHHHHHHHHHHHHHHCTTCCEEEE--SSHHHHHHHHHH
T ss_pred EeCCCCcHHHHHHHHHHHHHHHhcCCeEEEee--cC-----CChHHHHHHHHHHHHhCCCCCEEEE--cCCcchHHHHHH
Confidence 98665422114567888999999999876542 11 1224445556664433 4576554 677778889999
Q ss_pred HHHcCCCCC
Q 003821 160 AKEMGLVGP 168 (793)
Q Consensus 160 a~~~g~~~~ 168 (793)
+++.|+.-|
T Consensus 207 l~~~g~~vP 215 (297)
T 3rot_A 207 LLHPDRYDF 215 (297)
T ss_dssp HHSHHHHTC
T ss_pred HHhcCCccC
Confidence 999998533
No 101
>2x26_A Periplasmic aliphatic sulphonates-binding protein; transport protein; 1.75A {Escherichia coli}
Probab=96.35 E-value=0.011 Score=60.87 Aligned_cols=121 Identities=16% Similarity=0.078 Sum_probs=70.3
Q ss_pred CCCChHHhhhCCCcccccCchHHHHHHHh---hcCCCCcccc-ccCCHHHHHHHhhcCceEEEEechhhHHHHHhccCCc
Q 003821 545 NVTDIGWLKASNLNVGFDGDSFVRNYLEN---VLGFKPENIL-KVDHEYKYITDFESNRIAAAFLELSYERAFLSQHCKE 620 (793)
Q Consensus 545 ~i~sl~dL~~~~~~~g~~~~~~~~~~l~~---~~~~~~~~~~-~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~c~~ 620 (793)
+|++++||. |.++++..++....++.. ..+.....+. .+.+..+...++.+|++|+++...+.......+. .
T Consensus 96 ~i~s~~dL~--Gk~i~~~~gs~~~~~l~~~l~~~Gl~~~~v~~~~~~~~~~~~al~~G~vDa~~~~~~~~~~~~~~~-~- 171 (308)
T 2x26_A 96 PIKTVADLK--GHKVAFQKGSSSHNLLLRALRQAGLKFTDIQPTYLTPADARAAFQQGNVDAWAIWDPYYSAALLQG-G- 171 (308)
T ss_dssp SCCSGGGGT--TSEEEECTTSHHHHHHHHHHHHTTCCGGGSEEEECCHHHHHHHHHTTSSSEEEEETTHHHHHHHHS-S-
T ss_pred CCCCHHHcC--CCEEeeeCCCcHHHHHHHHHHHcCCCHHHeEEEecChHHHHHHHHcCCCCEEEecchhHHHHHhcC-C-
Confidence 488999998 889998666654443322 2233322332 3456788899999999999998887777665542 2
Q ss_pred eEEeCc--cccccceEEEec----CCCc-ChHHHHHHHHhh----hccC-chHHHHHHHcC
Q 003821 621 YTATIP--TYRFGGFAFVFQ----KGSP-LAADFSEAILKL----SENG-ELRSLEEKWFA 669 (793)
Q Consensus 621 ~~~~~~--~~~~~~~~~~~~----k~sp-l~~~in~~i~~l----~e~G-~~~~~~~~w~~ 669 (793)
+.++.. .+......+++. +..| +...|++++.+. .+++ ...++..+|+.
T Consensus 172 ~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~al~~a~~~~~~~~~~~~~~~~~~~~ 232 (308)
T 2x26_A 172 VRVLKDGTDLNQTGSFYLAARPYAEKNGAFIQGVLATFSEADALTRSQREQSIALLAKTMG 232 (308)
T ss_dssp EEEEEESTTSCCCCEEEEEEHHHHHHTHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHT
T ss_pred cEEEecCCCcCCcceEEEEcHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHhC
Confidence 333321 121112223332 3344 777888777763 3333 34445555543
No 102
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=96.35 E-value=0.046 Score=57.28 Aligned_cols=162 Identities=10% Similarity=0.056 Sum_probs=99.3
Q ss_pred cceEEEEcCCChhhHHHHHHhccCCCccEEeeeCCCCCCCCCC-----C--CC-CeEEEecCChHHHHHHHHHHHhhcC-
Q 003821 5 KEVKVIVGMETWGAATMVADIGSRAQVPVLSFAEPAIAPPLTS-----T--RW-PFLVRMANSSAEQITCTAALVGSYN- 75 (793)
Q Consensus 5 ~~V~aiiGp~~s~~~~~va~i~~~~~iP~Is~~~~~~~~~l~~-----~--~~-~~~~r~~p~~~~~~~ai~~ll~~~~- 75 (793)
++|.+||-.........+...+...+||+|..... .+.... . .+ .++-.+.+++...+..+++.|...+
T Consensus 61 ~~vDgiIi~~~~~~~~~~~~~~~~~giPvV~~~~~--~~~~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~g~ 138 (350)
T 3h75_A 61 DKPDYLMLVNEQYVAPQILRLSQGSGIKLFIVNSP--LTLDQRELIGQSRQNYSDWIGSMVGDDEEAGYRMLKELLHKLG 138 (350)
T ss_dssp SCCSEEEEECCSSHHHHHHHHHTTSCCEEEEEESC--CCTTTC------------CEEEEECCHHHHHHHHHHHHHHHHC
T ss_pred CCCCEEEEeCchhhHHHHHHHHHhCCCcEEEEcCC--CChHHHhhhcCCchhccceeeeecCChHHHHHHHHHHHHHHhh
Confidence 46766654323344556667788899999998876 332210 0 11 1256777888888888888887665
Q ss_pred -----c-eEEEEEEEcCCCccccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcC--CceEEEEec
Q 003821 76 -----W-RKVIIIYEDDATNADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRT--ESRVFIILQ 147 (793)
Q Consensus 76 -----w-~~vaii~~dd~~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~vivvl~ 147 (793)
- ++|+++...........-.+.+.+.+++.|. +.....+.... ..+.-...+.++.+. .+++|+ +
T Consensus 139 ~~~~g~~~~i~~i~g~~~~~~~~~R~~Gf~~~l~~~~~-~~~~~~~~~~~----~~~~~~~~~~~~L~~~~~~~aI~--~ 211 (350)
T 3h75_A 139 PVPAGHGIELLAFSGLKVTPAAQLRERGLRRALAEHPQ-VHLRQLVYGEW----NRERAYRQAQQLLKRYPKTQLVW--S 211 (350)
T ss_dssp CCCSSCCEEEEEEESCTTSHHHHHHHHHHHHHHHHCTT-EEEEEEEECTT----CHHHHHHHHHHHHHHCTTEEEEE--E
T ss_pred hhcCCCCceEEEEeCCCCCHHHHHHHHHHHHHHHHCCC-eEEEEEeeCCC----cHHHHHHHHHHHHHhCCCcCEEE--E
Confidence 4 8999998664422114557788899999886 22222222111 123444555555444 355544 4
Q ss_pred cChHHHHHHHHHHHHcCCCCCCeEEEEe
Q 003821 148 SSLAMGIHLFREAKEMGLVGPDSVWVIA 175 (793)
Q Consensus 148 ~~~~~~~~~l~~a~~~g~~~~~~~wi~~ 175 (793)
++...+..+++++++.|+.-++-+-+++
T Consensus 212 ~~d~~a~g~~~al~~~G~~vP~di~vvg 239 (350)
T 3h75_A 212 ANDEMALGAMQAARELGRKPGTDLLFSG 239 (350)
T ss_dssp SSHHHHHHHHHHHHHTTCCBTTTBEEEE
T ss_pred CChHHHHHHHHHHHHcCCCCCCCeEEEe
Confidence 6777888999999999997443333443
No 103
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=96.32 E-value=0.019 Score=58.44 Aligned_cols=154 Identities=16% Similarity=0.085 Sum_probs=92.5
Q ss_pred ccceEEEEcCCChhhHHHHHHhccCCCccEEeeeCCCCCCCCCCCCCCeEEEecCChHHHHHHHHHHHhhcCceEEEEEE
Q 003821 4 EKEVKVIVGMETWGAATMVADIGSRAQVPVLSFAEPAIAPPLTSTRWPFLVRMANSSAEQITCTAALVGSYNWRKVIIIY 83 (793)
Q Consensus 4 ~~~V~aiiGp~~s~~~~~va~i~~~~~iP~Is~~~~~~~~~l~~~~~~~~~r~~p~~~~~~~ai~~ll~~~~w~~vaii~ 83 (793)
+.+|.+||........ .....+...++|+|..... .+. + +..+..++...+..+++++...|-++|++|.
T Consensus 63 ~~~vdgiI~~~~~~~~-~~~~~l~~~~iPvV~~~~~--~~~------~-~~~V~~D~~~~g~~a~~~L~~~G~~~i~~i~ 132 (290)
T 3clk_A 63 ERPVMGILLLSIALTD-DNLQLLQSSDVPYCFLSMG--FDD------D-RPFISSDDEDIGYQATNLLINEGHRQIGIAG 132 (290)
T ss_dssp SSCCSEEEEESCC-----CHHHHHCC--CEEEESCC----C------C-SCEEECCHHHHHHHHHHHHHTTTCCSEEEES
T ss_pred hcCCCEEEEecccCCH-HHHHHHHhCCCCEEEEcCC--CCC------C-CCEEEeChHHHHHHHHHHHHHcCCCEEEEEe
Confidence 3567777643222222 2233455689999988654 221 1 2346778888888888988888999999998
Q ss_pred EcCC--CccccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhc-CCceEEEEeccChHHHHHHHHHH
Q 003821 84 EDDA--TNADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLR-TESRVFIILQSSLAMGIHLFREA 160 (793)
Q Consensus 84 ~dd~--~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~-~~~~vivvl~~~~~~~~~~l~~a 160 (793)
.+.+ .. ..-.+.+.+.+++.|+++.....+.... ...+-.+.+.++.+ ..+++|+. .+...+..+++++
T Consensus 133 ~~~~~~~~--~~R~~gf~~~l~~~g~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~ai~~--~~d~~a~g~~~al 204 (290)
T 3clk_A 133 IDQYPYTG--RKRLAGYKKALKEANIAINQEWIKPGDY----SYTSGEQAMKAFGKNTDLTGIIA--ASDMTAIGILNQA 204 (290)
T ss_dssp CCCCTTTH--HHHHHHHHHHHHHTTCCCCGGGEECCCS----SHHHHHHHHHHHCTTCCCSEEEE--SSHHHHHHHHHHH
T ss_pred CCCCCcch--HHHHHHHHHHHHHcCCCCCcceEEcCCC----ChhhHHHHHHHHhccCCCcEEEE--CCcHHHHHHHHHH
Confidence 6533 33 5567788899999997653211111111 12333445555543 45787665 6677788899999
Q ss_pred HHcCCCCCCeEEEEe
Q 003821 161 KEMGLVGPDSVWVIA 175 (793)
Q Consensus 161 ~~~g~~~~~~~wi~~ 175 (793)
++.|+.-|+-+-+++
T Consensus 205 ~~~g~~vP~di~vvg 219 (290)
T 3clk_A 205 SSFGIEVPKDLSIVS 219 (290)
T ss_dssp HHTTCCTTTTCEEEE
T ss_pred HHcCCCCCCceEEEE
Confidence 999987543333333
No 104
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=96.31 E-value=0.026 Score=57.28 Aligned_cols=155 Identities=6% Similarity=-0.039 Sum_probs=98.7
Q ss_pred cceEEEEc-CCChhhHHHHHHhccCCCccEEeeeCCCCCCCCCCCCCCeEEEecCChHHHHHHHHHHHhhcCceEEEEEE
Q 003821 5 KEVKVIVG-METWGAATMVADIGSRAQVPVLSFAEPAIAPPLTSTRWPFLVRMANSSAEQITCTAALVGSYNWRKVIIIY 83 (793)
Q Consensus 5 ~~V~aiiG-p~~s~~~~~va~i~~~~~iP~Is~~~~~~~~~l~~~~~~~~~r~~p~~~~~~~ai~~ll~~~~w~~vaii~ 83 (793)
.+|.|||- |.... . .....+...++|+|..... .+. ...+ .+..++...+..+++++...|-++++++.
T Consensus 65 ~~vdgiIi~~~~~~-~-~~~~~l~~~~iPvV~i~~~--~~~---~~~~---~V~~D~~~~g~~a~~~L~~~G~~~I~~i~ 134 (288)
T 3gv0_A 65 GSADGVIISKIEPN-D-PRVRFMTERNMPFVTHGRS--DMG---IEHA---FHDFDNEAYAYEAVERLAQCGRKRIAVIV 134 (288)
T ss_dssp TCCSEEEEESCCTT-C-HHHHHHHHTTCCEEEESCC--CSS---CCCE---EEEECHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCccEEEEecCCCC-c-HHHHHHhhCCCCEEEECCc--CCC---CCCc---EEEeCcHHHHHHHHHHHHHCCCCeEEEEc
Confidence 45666552 22211 1 3344556689999987754 221 2222 46677788888899999888999999998
Q ss_pred EcCCCccccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcC--CceEEEEeccChHHHHHHHHHHH
Q 003821 84 EDDATNADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRT--ESRVFIILQSSLAMGIHLFREAK 161 (793)
Q Consensus 84 ~dd~~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~vivvl~~~~~~~~~~l~~a~ 161 (793)
.+........-.+.+.+.+++.|+.+.....+... ....+....+.++.+. .+++|+. ++...+..++++++
T Consensus 135 ~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~ai~~--~~d~~A~g~~~al~ 208 (288)
T 3gv0_A 135 PPSRFSFHDHARKGFNRGIRDFGLTEFPIDAVTIE----TPLEKIRDFGQRLMQSSDRPDGIVS--ISGSSTIALVAGFE 208 (288)
T ss_dssp CCTTSHHHHHHHHHHHHHHHHTTCEECCCCSCCTT----SCHHHHHHHHHHHTTSSSCCSEEEE--SCHHHHHHHHHHHH
T ss_pred CCcccchHHHHHHHHHHHHHHcCCCcchhheeccc----cchHHHHHHHHHHHhCCCCCcEEEE--cCcHHHHHHHHHHH
Confidence 76543211456778889999999876433222211 1234455666666554 4677655 67778888999999
Q ss_pred HcCCCCCCeEEEEe
Q 003821 162 EMGLVGPDSVWVIA 175 (793)
Q Consensus 162 ~~g~~~~~~~wi~~ 175 (793)
+.|+.-|+-+-+++
T Consensus 209 ~~g~~vP~di~vig 222 (288)
T 3gv0_A 209 AAGVKIGEDVDIVS 222 (288)
T ss_dssp TTTCCTTTSCEEEE
T ss_pred HcCCCCCCceEEEE
Confidence 99997554333443
No 105
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=96.29 E-value=0.022 Score=57.88 Aligned_cols=157 Identities=15% Similarity=0.138 Sum_probs=95.4
Q ss_pred ccceEEEEcCCChhhHHHHHHhccCCCccEEeeeCCCCCCCCCCCCCCeEEEecCChHHHHHHHHHHHhhcCceEEEEEE
Q 003821 4 EKEVKVIVGMETWGAATMVADIGSRAQVPVLSFAEPAIAPPLTSTRWPFLVRMANSSAEQITCTAALVGSYNWRKVIIIY 83 (793)
Q Consensus 4 ~~~V~aiiGp~~s~~~~~va~i~~~~~iP~Is~~~~~~~~~l~~~~~~~~~r~~p~~~~~~~ai~~ll~~~~w~~vaii~ 83 (793)
+.+|.+||-........ ....+...++|+|..... .+. ...+ .+..++...+..++++|...|-++|++|.
T Consensus 62 ~~~vdgiIi~~~~~~~~-~~~~l~~~~iPvV~~~~~--~~~---~~~~---~V~~D~~~~g~~a~~~L~~~G~~~I~~i~ 132 (287)
T 3bbl_A 62 SGNVDGFVLSSINYNDP-RVQFLLKQKFPFVAFGRS--NPD---WDFA---WVDIDGTAGTRQAVEYLIGRGHRRIAILA 132 (287)
T ss_dssp TTCCSEEEECSCCTTCH-HHHHHHHTTCCEEEESCC--STT---CCCC---EEEECHHHHHHHHHHHHHHHTCCCEEEEE
T ss_pred cCCCCEEEEeecCCCcH-HHHHHHhcCCCEEEECCc--CCC---CCCC---EEEeccHHHHHHHHHHHHHCCCCeEEEEe
Confidence 35677776432221122 233445579999988654 221 1222 45677777788888888778999999998
Q ss_pred EcCCCccccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhc-C---CceEEEEeccChHHHHHHHHH
Q 003821 84 EDDATNADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLR-T---ESRVFIILQSSLAMGIHLFRE 159 (793)
Q Consensus 84 ~dd~~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~-~---~~~vivvl~~~~~~~~~~l~~ 159 (793)
..........-.+.+.+.+++.|+++.....+.... ...+-.+.+.++.+ . .+++|+. .+...+..++++
T Consensus 133 ~~~~~~~~~~R~~Gf~~~l~~~g~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~ai~~--~~d~~a~g~~~a 206 (287)
T 3bbl_A 133 WPEDSRVGNDRLQGYLEAMQTAQLPIETGYILRGEG----TFEVGRAMTLHLLDLSPERRPTAIMT--LNDTMAIGAMAA 206 (287)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHTTCCCCGGGEEECCS----SHHHHHHHHHHHHTSCTTTSCSEEEE--SSHHHHHHHHHH
T ss_pred CCcccccHHHHHHHHHHHHHHcCCCCChhhEEeCCC----CHHHHHHHHHHHHhhCCCCCCcEEEE--CCcHHHHHHHHH
Confidence 764321114556778889999997653221111111 12334455666554 3 4677665 667788889999
Q ss_pred HHHcCCCCCCeEEEEe
Q 003821 160 AKEMGLVGPDSVWVIA 175 (793)
Q Consensus 160 a~~~g~~~~~~~wi~~ 175 (793)
+++.|+.-|+-+-+++
T Consensus 207 l~~~G~~vP~di~vig 222 (287)
T 3bbl_A 207 ARERGLTIGTDLAIIG 222 (287)
T ss_dssp HHHTTCCBTTTBEEEE
T ss_pred HHHcCCCCCCCEEEEE
Confidence 9999986443333333
No 106
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=96.26 E-value=0.023 Score=59.07 Aligned_cols=157 Identities=16% Similarity=0.107 Sum_probs=96.1
Q ss_pred ccceEEEEcCCChhhHHHHHHhccCCCccEEeeeCCCCCCCCCCCCCCeEEEecCChHHHHHHHHHHHhhcCceEEEEEE
Q 003821 4 EKEVKVIVGMETWGAATMVADIGSRAQVPVLSFAEPAIAPPLTSTRWPFLVRMANSSAEQITCTAALVGSYNWRKVIIIY 83 (793)
Q Consensus 4 ~~~V~aiiGp~~s~~~~~va~i~~~~~iP~Is~~~~~~~~~l~~~~~~~~~r~~p~~~~~~~ai~~ll~~~~w~~vaii~ 83 (793)
+.+|.+||-.........+. .+...++|+|..... .+ ....+ .+..++..-+..++++|...|.++|++|.
T Consensus 117 ~~~vdgiI~~~~~~~~~~~~-~l~~~~iPvV~~~~~--~~---~~~~~---~V~~D~~~~~~~a~~~L~~~G~~~I~~i~ 187 (332)
T 2o20_A 117 SKQVDGIVYMGSSLDEKIRT-SLKNSRTPVVLVGTI--DG---DKEIP---SVNIDYHLAAYQSTKKLIDSGNKKIAYIM 187 (332)
T ss_dssp HTTCSEEEECSSCCCHHHHH-HHHHHCCCEEEESCC--CT---TSCSC---EEECCHHHHHHHHHHHHHHTTCSSEEEEC
T ss_pred hCCCCEEEEeCCCCCHHHHH-HHHhCCCCEEEEccc--cC---CCCCC---EEEeChHHHHHHHHHHHHHCCCCeEEEEe
Confidence 35677776432211122233 334679999988654 22 12222 46677777778888888888999999998
Q ss_pred EcCCCccccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcCCceEEEEeccChHHHHHHHHHHHHc
Q 003821 84 EDDATNADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRTESRVFIILQSSLAMGIHLFREAKEM 163 (793)
Q Consensus 84 ~dd~~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivvl~~~~~~~~~~l~~a~~~ 163 (793)
.+........-.+.+.+.+++.|+++.....+.... ...+-...+.++.+..+++|+. .+...+..+++++++.
T Consensus 188 ~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~----~~~~~~~~~~~ll~~~~~ai~~--~~d~~A~g~~~al~~~ 261 (332)
T 2o20_A 188 GSLKDVENTERMVGYQEALLEANIEFDENLVFEGNY----SYEQGKALAERLLERGATSAVV--SHDTVAVGLLSAMMDK 261 (332)
T ss_dssp SCTTSHHHHHHHHHHHHHHHHTTCCCCGGGEECSCC----SHHHHHHHHHHHHHTTCCEEEE--SCHHHHHHHHHHHHHT
T ss_pred CCcccccHHHHHHHHHHHHHHcCCCCChhhEEeCCC----CHHHHHHHHHHHhccCCCEEEE--CChHHHHHHHHHHHHc
Confidence 764321114456778899999998654221222111 1223334455544337888665 6777888899999999
Q ss_pred CCCCCCeEEEEe
Q 003821 164 GLVGPDSVWVIA 175 (793)
Q Consensus 164 g~~~~~~~wi~~ 175 (793)
|+.-|+-+-+++
T Consensus 262 G~~vP~disvig 273 (332)
T 2o20_A 262 GVKVPEDFEIIS 273 (332)
T ss_dssp TCCTTTTCEEEE
T ss_pred CCCCccCEEEEE
Confidence 997554344444
No 107
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=96.22 E-value=0.08 Score=54.07 Aligned_cols=148 Identities=13% Similarity=0.020 Sum_probs=95.4
Q ss_pred cceEEEE-cCCChhhHHHHHHhccCCCccEEeeeCCCCCCCCCCCCCCeEEEecCChHHHHHHHHHHHhhc--CceEEEE
Q 003821 5 KEVKVIV-GMETWGAATMVADIGSRAQVPVLSFAEPAIAPPLTSTRWPFLVRMANSSAEQITCTAALVGSY--NWRKVII 81 (793)
Q Consensus 5 ~~V~aii-Gp~~s~~~~~va~i~~~~~iP~Is~~~~~~~~~l~~~~~~~~~r~~p~~~~~~~ai~~ll~~~--~w~~vai 81 (793)
.+|.+|| .|............+...+||+|..... .+. . +.+..+.+++...+..+++++... |-++|++
T Consensus 60 ~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~~--~~~---~--~~~~~V~~d~~~~g~~~~~~l~~~~~g~~~i~~ 132 (305)
T 3g1w_A 60 KNPAGIAISAIDPVELTDTINKAVDAGIPIVLFDSG--APD---S--HAHSFLGTNNYNAGMNAAYKMAELLDGEGEVAV 132 (305)
T ss_dssp HCCSEEEECCSSTTTTHHHHHHHHHTTCCEEEESSC--CTT---S--CCSCEEECCHHHHHHHHHHHHHHHTTTCEEEEE
T ss_pred hCCCEEEEcCCCHHHHHHHHHHHHHCCCcEEEECCC--CCC---C--ceeEEECcCHHHHHHHHHHHHHHHhCCCcEEEE
Confidence 4676665 4444443344455566789999998765 222 1 112346788888888899988887 9999999
Q ss_pred EEEcCCCccccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcC--CceEEEEeccChHHHHHHHHH
Q 003821 82 IYEDDATNADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRT--ESRVFIILQSSLAMGIHLFRE 159 (793)
Q Consensus 82 i~~dd~~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~vivvl~~~~~~~~~~l~~ 159 (793)
+...+.. ....-.+.+.+.+++.|..+.....+.... ........+.++.+. .+++|+. .+...+..++++
T Consensus 133 i~~~~~~-~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~ai~~--~~d~~a~g~~~a 205 (305)
T 3g1w_A 133 ITLPNQL-NHQERTTGFKETLEAEFPAIEVIAVEDGRG----DSLHSRRVAHQLLEDYPNLAGIFA--TEANGGVGVGDA 205 (305)
T ss_dssp EECTTCH-HHHHHHHHHHHHHHHHCTTEEEEEEEECTT----CHHHHHHHHHHHHHHCTTEEEEEE--SSHHHHHHHHHH
T ss_pred EeCCCcc-cHHHHHHHHHHHHHhhCCCCEEEEEecCCC----CHHHHHHHHHHHHHhCCCceEEEE--CCCcchhhHHHH
Confidence 9865432 114556778889988877654432222111 123344555555443 4566544 677788899999
Q ss_pred HHHcCCC
Q 003821 160 AKEMGLV 166 (793)
Q Consensus 160 a~~~g~~ 166 (793)
+++.|+.
T Consensus 206 l~~~g~~ 212 (305)
T 3g1w_A 206 VRLESRA 212 (305)
T ss_dssp HHHTTCT
T ss_pred HHhcCCC
Confidence 9999997
No 108
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=96.18 E-value=0.08 Score=53.65 Aligned_cols=154 Identities=13% Similarity=0.059 Sum_probs=98.9
Q ss_pred ccceEEEEcCCChhhHHHHHHhccCCCccEEeeeCCCCCCCCCCCCCCeEEEecCChHHHHHHHHHHHhhcCceEEEEEE
Q 003821 4 EKEVKVIVGMETWGAATMVADIGSRAQVPVLSFAEPAIAPPLTSTRWPFLVRMANSSAEQITCTAALVGSYNWRKVIIIY 83 (793)
Q Consensus 4 ~~~V~aiiGp~~s~~~~~va~i~~~~~iP~Is~~~~~~~~~l~~~~~~~~~r~~p~~~~~~~ai~~ll~~~~w~~vaii~ 83 (793)
+.+|.+||-.........+.. +.. ++|+|..... .+ .... -.+..++..-+..++++|...|-++|+++.
T Consensus 64 ~~~vdgiIi~~~~~~~~~~~~-~~~-~iPvV~i~~~--~~---~~~~---~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~ 133 (289)
T 3k9c_A 64 RERCEAAILLGTRFDTDELGA-LAD-RVPALVVARA--SG---LPGV---GAVRGDDVAGITLAVDHLTELGHRNIAHID 133 (289)
T ss_dssp TTTEEEEEEETCCCCHHHHHH-HHT-TSCEEEESSC--CS---STTS---EEEEECHHHHHHHHHHHHHHTTCCSEEEEC
T ss_pred hCCCCEEEEECCCCCHHHHHH-HHc-CCCEEEEcCC--CC---CCCC---CEEEeChHHHHHHHHHHHHHCCCCcEEEEe
Confidence 457877763222222233333 345 9999988765 22 1222 346677777888888999888999999998
Q ss_pred EcCCCccccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcC--CceEEEEeccChHHHHHHHHHHH
Q 003821 84 EDDATNADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRT--ESRVFIILQSSLAMGIHLFREAK 161 (793)
Q Consensus 84 ~dd~~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~vivvl~~~~~~~~~~l~~a~ 161 (793)
..... ....-.+.+.+.+++.|+.+......... ....-...+.++.+. .+++|+. ++...+..++++++
T Consensus 134 ~~~~~-~~~~R~~Gf~~al~~~g~~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~ai~~--~~d~~A~g~~~al~ 205 (289)
T 3k9c_A 134 GADAP-GGADRRAGFLAAMDRHGLSASATVVTGGT-----TETEGAEGMHTLLEMPTPPTAVVA--FNDRCATGVLDLLV 205 (289)
T ss_dssp CTTST-THHHHHHHHHHHHHHTTCGGGEEEECCCS-----SHHHHHHHHHHHHTSSSCCSEEEE--SSHHHHHHHHHHHH
T ss_pred CCCCc-cHHHHHHHHHHHHHHCCCCCCccEEECCC-----CHHHHHHHHHHHHcCCCCCCEEEE--CChHHHHHHHHHHH
Confidence 76543 12556788899999999875433222211 223445556665543 5777655 67778889999999
Q ss_pred HcCCCCCCeEEEEe
Q 003821 162 EMGLVGPDSVWVIA 175 (793)
Q Consensus 162 ~~g~~~~~~~wi~~ 175 (793)
+.|+.-|+-+-+++
T Consensus 206 ~~g~~vP~di~vig 219 (289)
T 3k9c_A 206 RSGRDVPADISVVG 219 (289)
T ss_dssp HTTCCTTTTCEEEE
T ss_pred HcCCCCCCceEEEE
Confidence 99997554343443
No 109
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=96.17 E-value=0.056 Score=55.04 Aligned_cols=156 Identities=9% Similarity=0.119 Sum_probs=96.7
Q ss_pred ccceEEEEcCCChhhHHHHHHhccCCCccEEeeeCCCCCCCCCCCCCCeEEEecCChHHHHHHHHHHHhhcCceEEEEEE
Q 003821 4 EKEVKVIVGMETWGAATMVADIGSRAQVPVLSFAEPAIAPPLTSTRWPFLVRMANSSAEQITCTAALVGSYNWRKVIIIY 83 (793)
Q Consensus 4 ~~~V~aiiGp~~s~~~~~va~i~~~~~iP~Is~~~~~~~~~l~~~~~~~~~r~~p~~~~~~~ai~~ll~~~~w~~vaii~ 83 (793)
+.+|.|||=...... ......+...++|+|..... .+.. ....+ .+..++..-+..++++|...|-+++++|.
T Consensus 66 ~~~vdGiI~~~~~~~-~~~~~~l~~~~iPvV~i~~~--~~~~-~~~~~---~V~~D~~~~~~~a~~~L~~~G~~~I~~i~ 138 (295)
T 3hcw_A 66 QRMVDAFILLYSKEN-DPIKQMLIDESMPFIVIGKP--TSDI-DHQFT---HIDNDNILASENLTRHVIEQGVDELIFIT 138 (295)
T ss_dssp TTCCSEEEESCCCTT-CHHHHHHHHTTCCEEEESCC--CSSG-GGGSC---EEEECHHHHHHHHHHHHHHHCCSEEEEEE
T ss_pred hCCcCEEEEcCcccC-hHHHHHHHhCCCCEEEECCC--Cccc-cCCce---EEecCcHHHHHHHHHHHHHcCCccEEEEc
Confidence 356777663222211 23345566789999988755 2211 00222 45667777788888888888999999999
Q ss_pred EcCCCccccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcC-----CceEEEEeccChHHHHHHHH
Q 003821 84 EDDATNADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRT-----ESRVFIILQSSLAMGIHLFR 158 (793)
Q Consensus 84 ~dd~~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-----~~~vivvl~~~~~~~~~~l~ 158 (793)
..........-.+.+.+++++.|+.+. ..... . ...+....+.++.+. .+++|+. ++...+..+++
T Consensus 139 ~~~~~~~~~~R~~Gf~~al~~~g~~~~-~~~~~-~-----~~~~~~~~~~~~l~~~~~~~~~~ai~~--~~d~~A~g~~~ 209 (295)
T 3hcw_A 139 EKGNFEVSKDRIQGFETVASQFNLDYQ-IIETS-N-----EREVILNYMQNLHTRLKDPNIKQAIIS--LDAMLHLAILS 209 (295)
T ss_dssp ESSCCHHHHHHHHHHHHHHHHTTCEEE-EEEEC-S-----CHHHHHHHHHHHHHHHTCTTSCEEEEE--SSHHHHHHHHH
T ss_pred CCccchhHHHHHHHHHHHHHHcCCCee-EEecc-C-----CHHHHHHHHHHHHhhcccCCCCcEEEE--CChHHHHHHHH
Confidence 765432114567788899999998765 21111 1 123333444444322 5777554 67777889999
Q ss_pred HHHHcCCCCCCeEEEEe
Q 003821 159 EAKEMGLVGPDSVWVIA 175 (793)
Q Consensus 159 ~a~~~g~~~~~~~wi~~ 175 (793)
++++.|+.-|+-+-+++
T Consensus 210 al~~~g~~vP~di~vig 226 (295)
T 3hcw_A 210 VLYELNIEIPKDVMTAT 226 (295)
T ss_dssp HHHHTTCCTTTTEEEEE
T ss_pred HHHHcCCCCCCceEEEE
Confidence 99999997554444444
No 110
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=96.16 E-value=0.076 Score=54.28 Aligned_cols=153 Identities=14% Similarity=0.104 Sum_probs=94.8
Q ss_pred ccceEEEEc-CCChhhHHHHHHhccCCCccEEeeeCCCCCCCCCCCCCCeEEEecCChHHHHHHHHHHHhh---------
Q 003821 4 EKEVKVIVG-METWGAATMVADIGSRAQVPVLSFAEPAIAPPLTSTRWPFLVRMANSSAEQITCTAALVGS--------- 73 (793)
Q Consensus 4 ~~~V~aiiG-p~~s~~~~~va~i~~~~~iP~Is~~~~~~~~~l~~~~~~~~~r~~p~~~~~~~ai~~ll~~--------- 73 (793)
+.+|.+||- |............+...+||+|..... .+......++.+..+..++...++.+++++..
T Consensus 57 ~~~vdgiii~~~~~~~~~~~~~~~~~~~iPvV~~~~~--~~~~~~~~~~~~~~V~~d~~~~g~~~~~~L~~~~~~~~~~~ 134 (309)
T 2fvy_A 57 AKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKE--PSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWD 134 (309)
T ss_dssp HTTCSEEEECCSSGGGHHHHHHHHHTTTCCEEEESSC--CCHHHHHTCTTEEEEECCHHHHHHHHHHHHHHHHHHCGGGC
T ss_pred HcCCCEEEEeCCCcchhHHHHHHHHHCCCcEEEecCC--CCcccccccCccEEEecCHHHHHHHHHHHHHHHHhhccccc
Confidence 356777764 333333334445566789999988654 22110011234556778888888888888766
Q ss_pred ---cCceEEEEEEEcCCCccccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcC----CceEEEEe
Q 003821 74 ---YNWRKVIIIYEDDATNADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRT----ESRVFIIL 146 (793)
Q Consensus 74 ---~~w~~vaii~~dd~~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~----~~~vivvl 146 (793)
.|-++|++|...........-.+.+.+.+++.|+.+.....+.... ....-...+.++.+. .+++|+.
T Consensus 135 ~~g~g~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~ai~~- 209 (309)
T 2fvy_A 135 LNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMW----DTAQAKDKMDAWLSGPNANKIEVVIA- 209 (309)
T ss_dssp TTCSSSEEEEEEECSTTCHHHHHHHHHHHHHHHHTTCCEEEEEEEECTT----CHHHHHHHHHHHHTSTTGGGCCEEEE-
T ss_pred ccCCCceEEEEEEcCCCCccHHHHHHHHHHHHHhcCCceEEEEEecCCC----CHHHHHHHHHHHHHhCCCCCccEEEE-
Confidence 7888999998764321114557778899999998764332222111 123344555665443 4677655
Q ss_pred ccChHHHHHHHHHHHHcC
Q 003821 147 QSSLAMGIHLFREAKEMG 164 (793)
Q Consensus 147 ~~~~~~~~~~l~~a~~~g 164 (793)
++...+..+++++++.|
T Consensus 210 -~~d~~a~g~~~al~~~g 226 (309)
T 2fvy_A 210 -NNDAMAMGAVEALKAHN 226 (309)
T ss_dssp -SSHHHHHHHHHHHHHTT
T ss_pred -CCchhHHHHHHHHHHcC
Confidence 66777888999999998
No 111
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=96.15 E-value=0.035 Score=56.34 Aligned_cols=157 Identities=18% Similarity=0.132 Sum_probs=96.9
Q ss_pred ccceEEEEcCCChhhHHHHHHhccCCCccEEeeeCCCCCCCCCCCCCCeEEEecCChHHHHHHHHHHHhhcCceEEEEEE
Q 003821 4 EKEVKVIVGMETWGAATMVADIGSRAQVPVLSFAEPAIAPPLTSTRWPFLVRMANSSAEQITCTAALVGSYNWRKVIIIY 83 (793)
Q Consensus 4 ~~~V~aiiGp~~s~~~~~va~i~~~~~iP~Is~~~~~~~~~l~~~~~~~~~r~~p~~~~~~~ai~~ll~~~~w~~vaii~ 83 (793)
+.+|.+||-.........+ ..+...++|+|..... .+ ....+ .+..++..-+..++++|...|.++|++|.
T Consensus 70 ~~~vdgiIi~~~~~~~~~~-~~l~~~~iPvV~~~~~--~~---~~~~~---~V~~D~~~~g~~a~~~L~~~G~~~I~~i~ 140 (289)
T 2fep_A 70 GKQVDGIVFMGGNITDEHV-AEFKRSPVPIVLAASV--EE---QEETP---SVAIDYEQAIYDAVKLLVDKGHTDIAFVS 140 (289)
T ss_dssp HTTCSEEEECCSCCCHHHH-HHHHHSSSCEEEESCC--CT---TCCSC---EEECCHHHHHHHHHHHHHHTTCSSEEEEE
T ss_pred hCCCCEEEEecCCCCHHHH-HHHHhcCCCEEEEccc--cC---CCCCC---EEEECcHHHHHHHHHHHHHCCCCeEEEEe
Confidence 3567777642221122223 3344689999988654 22 12222 46677777888888988888999999998
Q ss_pred EcC-CCccccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcC--CceEEEEeccChHHHHHHHHHH
Q 003821 84 EDD-ATNADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRT--ESRVFIILQSSLAMGIHLFREA 160 (793)
Q Consensus 84 ~dd-~~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~vivvl~~~~~~~~~~l~~a 160 (793)
... .......-.+.+.+.+++.|+++.....+.... ...+-.+.+.++.+. .+++|+. .+...+..+++++
T Consensus 141 ~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~ai~~--~~d~~A~g~~~al 214 (289)
T 2fep_A 141 GPMAEPINRSKKLQGYKRALEEANLPFNEQFVAEGDY----TYDSGLEALQHLMSLDKKPTAILS--ATDEMALGIIHAA 214 (289)
T ss_dssp SCTTSHHHHTTHHHHHHHHHHHTTCCCCGGGEEECCS----CHHHHHHHHHHHTTSSSCCSEEEE--SSHHHHHHHHHHH
T ss_pred CCccccccHHHHHHHHHHHHHHcCCCCChheEeeCCC----CHHHHHHHHHHHHcCCCCCCEEEE--CCHHHHHHHHHHH
Confidence 765 321115567889999999997654221111111 123344556665543 5777665 6677788999999
Q ss_pred HHcCCCCCCeEEEEe
Q 003821 161 KEMGLVGPDSVWVIA 175 (793)
Q Consensus 161 ~~~g~~~~~~~wi~~ 175 (793)
++.|+.-|+-+-+++
T Consensus 215 ~~~G~~vP~di~vvg 229 (289)
T 2fep_A 215 QDQGLSIPEDLDIIG 229 (289)
T ss_dssp HHTTCCTTTTCEEEE
T ss_pred HHcCCCCCCCeEEEE
Confidence 999986443333333
No 112
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=96.14 E-value=0.016 Score=52.45 Aligned_cols=76 Identities=14% Similarity=0.082 Sum_probs=60.9
Q ss_pred HHHHHHHhhhcccCCCCCCCccccchhHHHHHHHHHhhcc-cc-ccccchhhHHHHHHHHHHHHHHHHHHhhhheeeeec
Q 003821 463 YTMSVVWFLEHRWNPEFNGPWNIQIGTALWFTFSSLFFAH-RE-RIYSNLTRLVVVVWLFVVLILNSSYTASLSSMLTVQ 540 (793)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~-~~~s~s~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~ 540 (793)
+.+++++.+|+..+ ++...++.+++|+++.++...| ++ .|.+..+|++.++|.++++.+.+..++.+++.++..
T Consensus 65 ~~a~~~~~~E~~~~----~~~~~s~~~a~y~s~vTltTVGYGDi~P~t~~gr~~~~~~~l~Gv~~~a~~~~~i~~~~~~~ 140 (155)
T 2a9h_A 65 AGSYLAVLAERGAP----GAALISYPDALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSYGLVFAAVATWFVGR 140 (155)
T ss_dssp HHHHHHHHHHTTSS----CSSTTSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHhccCC----CCccCcccceeheeeeeeecccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777776542 2233468999999999999888 66 479999999999999999999999999999998765
Q ss_pred cC
Q 003821 541 RL 542 (793)
Q Consensus 541 ~~ 542 (793)
..
T Consensus 141 ~~ 142 (155)
T 2a9h_A 141 EQ 142 (155)
T ss_dssp CC
T ss_pred HH
Confidence 43
No 113
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=96.09 E-value=0.025 Score=57.68 Aligned_cols=156 Identities=9% Similarity=0.060 Sum_probs=98.2
Q ss_pred ccceEEEEc-CCChhhHHHHHHhccCCCccEEeeeCCCCCCCCCCCCCCeEEEecCChHHHHHHHHHHHhhcCceEEEEE
Q 003821 4 EKEVKVIVG-METWGAATMVADIGSRAQVPVLSFAEPAIAPPLTSTRWPFLVRMANSSAEQITCTAALVGSYNWRKVIII 82 (793)
Q Consensus 4 ~~~V~aiiG-p~~s~~~~~va~i~~~~~iP~Is~~~~~~~~~l~~~~~~~~~r~~p~~~~~~~ai~~ll~~~~w~~vaii 82 (793)
+.+|.+||= |..... .....+...++|+|..... .+ .... -.+..++..-+..++++|...|-++++++
T Consensus 63 ~~~vdGiIi~~~~~~~--~~~~~l~~~~iPvV~~~~~--~~---~~~~---~~V~~D~~~~~~~a~~~L~~~G~~~I~~i 132 (294)
T 3qk7_A 63 TRRVDALIVAHTQPED--FRLQYLQKQNFPFLALGRS--HL---PKPY---AWFDFDNHAGASLAVKRLLELGHQRIAFV 132 (294)
T ss_dssp HTCCSEEEECSCCSSC--HHHHHHHHTTCCEEEESCC--CC---SSCC---EEEEECHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred cCCCCEEEEeCCCCCh--HHHHHHHhCCCCEEEECCC--CC---CCCC---CEEEcChHHHHHHHHHHHHHCCCceEEEE
Confidence 346766653 322222 3345566789999987764 21 1222 34667778888888899988899999999
Q ss_pred EEcCCCccccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcC--CceEEEEeccChHHHHHHHHHH
Q 003821 83 YEDDATNADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRT--ESRVFIILQSSLAMGIHLFREA 160 (793)
Q Consensus 83 ~~dd~~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~vivvl~~~~~~~~~~l~~a 160 (793)
...........-.+.+.+++++.|+.+.....+.... ....-...+.++.+. .+++|+. ++...+..+++++
T Consensus 133 ~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~ai~~--~nd~~A~g~~~al 206 (294)
T 3qk7_A 133 STDARISYVDQRLQGYVQTMSEAGLMPLAGYLQKADP----TRPGGYLAASRLLALEVPPTAIIT--DCNMLGDGVASAL 206 (294)
T ss_dssp EESSCCHHHHHHHHHHHHHHHTTTCCCCTTCEEEECS----SHHHHHHHHHHHHHSSSCCSEEEE--SSHHHHHHHHHHH
T ss_pred eCCcccchHHHHHHHHHHHHHHCCCCCChhHeecCCC----CHHHHHHHHHHHHcCCCCCcEEEE--CCHHHHHHHHHHH
Confidence 8875432114557788899999998643211111111 123344455555443 5777665 7778888999999
Q ss_pred HHcCCCCCCeEEEEe
Q 003821 161 KEMGLVGPDSVWVIA 175 (793)
Q Consensus 161 ~~~g~~~~~~~wi~~ 175 (793)
++.|+.-|+-+-+++
T Consensus 207 ~~~G~~vP~di~vig 221 (294)
T 3qk7_A 207 DKAGLLGGEGISLIA 221 (294)
T ss_dssp HHTTCSSTTSCEEEE
T ss_pred HHcCCCCCCceEEEe
Confidence 999997554343443
No 114
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=96.05 E-value=0.018 Score=58.23 Aligned_cols=151 Identities=13% Similarity=0.082 Sum_probs=94.7
Q ss_pred ccceEEEEcCCChhhHHHHHHhccCCCccEEeeeCCCCCCCCCCCCCCeEEEecCChHHHHHHHHHHHhhcCceEEEEEE
Q 003821 4 EKEVKVIVGMETWGAATMVADIGSRAQVPVLSFAEPAIAPPLTSTRWPFLVRMANSSAEQITCTAALVGSYNWRKVIIIY 83 (793)
Q Consensus 4 ~~~V~aiiGp~~s~~~~~va~i~~~~~iP~Is~~~~~~~~~l~~~~~~~~~r~~p~~~~~~~ai~~ll~~~~w~~vaii~ 83 (793)
+.+|.+|| .........+.. .++|+|..... .+ .....+ .+..++...++.+++++...|-++++++.
T Consensus 58 ~~~vdgiI-~~~~~~~~~~~~----~~iPvV~~~~~--~~--~~~~~~---~V~~D~~~~g~~a~~~L~~~G~~~i~~i~ 125 (280)
T 3gyb_A 58 SMRPDGII-IAQDIPDFTVPD----SLPPFVIAGTR--IT--QASTHD---SVANDDFRGAEIATKHLIDLGHTHIAHLR 125 (280)
T ss_dssp TTCCSEEE-EESCC------------CCCEEEESCC--CS--SSCSTT---EEEECHHHHHHHHHHHHHHTTCCSEEEEC
T ss_pred hCCCCEEE-ecCCCChhhHhh----cCCCEEEECCC--CC--CCCCCC---EEEechHHHHHHHHHHHHHCCCCeEEEEe
Confidence 35677777 222222222222 89999988765 31 122233 35677788888899999888999999998
Q ss_pred EcCCCccccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcC--CceEEEEeccChHHHHHHHHHHH
Q 003821 84 EDDATNADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRT--ESRVFIILQSSLAMGIHLFREAK 161 (793)
Q Consensus 84 ~dd~~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~vivvl~~~~~~~~~~l~~a~ 161 (793)
...... ..-.+.+.+++++.|..+.... +... .....-...+.++.+. .+++|+. .+...+..++++++
T Consensus 126 ~~~~~~--~~R~~gf~~~l~~~~~~~~~~~-~~~~----~~~~~~~~~~~~~l~~~~~~~ai~~--~~d~~a~g~~~al~ 196 (280)
T 3gyb_A 126 VGSGAG--LRRFESFEATMRAHGLEPLSND-YLGP----AVEHAGYTETLALLKEHPEVTAIFS--SNDITAIGALGAAR 196 (280)
T ss_dssp CSSHHH--HHHHHHHHHHHHHTTCCCEECC-CCSC----CCHHHHHHHHHHHHHHCTTCCEEEE--SSHHHHHHHHHHHH
T ss_pred CCCchH--HHHHHHHHHHHHHcCcCCCccc-ccCC----CCHHHHHHHHHHHHhCCCCCCEEEE--CChHHHHHHHHHHH
Confidence 765433 6667888899999998765433 2211 1223344455555433 4777665 67778889999999
Q ss_pred HcCCCCCCeEEEEe
Q 003821 162 EMGLVGPDSVWVIA 175 (793)
Q Consensus 162 ~~g~~~~~~~wi~~ 175 (793)
+.|+.-++-+-+++
T Consensus 197 ~~g~~vP~di~vvg 210 (280)
T 3gyb_A 197 ELGLRVPEDLSIIG 210 (280)
T ss_dssp HHTCCTTTTCEEEE
T ss_pred HcCCCCCCeeEEEE
Confidence 99997554344444
No 115
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=96.05 E-value=0.026 Score=57.39 Aligned_cols=157 Identities=11% Similarity=0.019 Sum_probs=94.8
Q ss_pred ccceEEEEcCCChhhHHHHHHhccCCCccEEeeeCCCCCCCCCCCCCCeEEEecCChHHHHHHHHHHHhhcCceEEEEEE
Q 003821 4 EKEVKVIVGMETWGAATMVADIGSRAQVPVLSFAEPAIAPPLTSTRWPFLVRMANSSAEQITCTAALVGSYNWRKVIIIY 83 (793)
Q Consensus 4 ~~~V~aiiGp~~s~~~~~va~i~~~~~iP~Is~~~~~~~~~l~~~~~~~~~r~~p~~~~~~~ai~~ll~~~~w~~vaii~ 83 (793)
+.+|.+||-......... ...+...++|+|..... .+. ... ..+..++..-+..+++++...|-++|++|.
T Consensus 65 ~~~vdgiIi~~~~~~~~~-~~~l~~~~iPvV~~~~~--~~~---~~~---~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~ 135 (290)
T 2rgy_A 65 GRDCDGVVVISHDLHDED-LDELHRMHPKMVFLNRA--FDA---LPD---ASFCPDHRRGGELAAATLIEHGHRKLAVIS 135 (290)
T ss_dssp HTTCSEEEECCSSSCHHH-HHHHHHHCSSEEEESSC--CTT---SGG---GEECCCHHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred hcCccEEEEecCCCCHHH-HHHHhhcCCCEEEEccc--cCC---CCC---CEEEeCcHHHHHHHHHHHHHCCCceEEEEe
Confidence 356777764322222222 23344579999988654 222 112 246677777788888988888999999998
Q ss_pred EcCCCccccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhc--CCceEEEEeccChHHHHHHHHHHH
Q 003821 84 EDDATNADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLR--TESRVFIILQSSLAMGIHLFREAK 161 (793)
Q Consensus 84 ~dd~~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~vivvl~~~~~~~~~~l~~a~ 161 (793)
.+........-.+.+.+.+++.|+++.....+.... ...+-...+.++.+ ..+++|+. ++...+..++++++
T Consensus 136 ~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~ai~~--~~d~~A~g~~~al~ 209 (290)
T 2rgy_A 136 GPFTASDNVERLDGFFDELARHGIARDSVPLIESDF----SPEGGYAATCQLLESKAPFTGLFC--ANDTMAVSALARFQ 209 (290)
T ss_dssp SCTTCHHHHHHHHHHHHHHHTTTCCGGGSCEEECCS----SHHHHHHHHHHHHHHTCCCSEEEE--SSHHHHHHHHHHHH
T ss_pred CCCCCccHHHHHHHHHHHHHHcCCCCCcccEEecCC----ChhHHHHHHHHHHhCCCCCcEEEE--CCcHHHHHHHHHHH
Confidence 764321114456778889999997653221111111 12233344455443 35787665 67777889999999
Q ss_pred HcCCCCCCeEEEEe
Q 003821 162 EMGLVGPDSVWVIA 175 (793)
Q Consensus 162 ~~g~~~~~~~wi~~ 175 (793)
+.|+.-|+-+-+++
T Consensus 210 ~~G~~vP~di~vvg 223 (290)
T 2rgy_A 210 QLGISVPGDVSVIG 223 (290)
T ss_dssp HTTCCTTTTCEEEE
T ss_pred HcCCCCCCceEEEE
Confidence 99997543333333
No 116
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=96.04 E-value=0.022 Score=59.37 Aligned_cols=157 Identities=14% Similarity=0.102 Sum_probs=100.7
Q ss_pred cceEEEEcCCChhhHHHHHHhccCCCccEEeeeCCCCCCCCCCCCCCeEEEecCChHHHHHHHHHHHhhcCceEEEEEEE
Q 003821 5 KEVKVIVGMETWGAATMVADIGSRAQVPVLSFAEPAIAPPLTSTRWPFLVRMANSSAEQITCTAALVGSYNWRKVIIIYE 84 (793)
Q Consensus 5 ~~V~aiiGp~~s~~~~~va~i~~~~~iP~Is~~~~~~~~~l~~~~~~~~~r~~p~~~~~~~ai~~ll~~~~w~~vaii~~ 84 (793)
.+|.+||-.........+...+...++|+|..... .+. ...+ .+..++..-+...++++...|.+++++|..
T Consensus 118 ~~vdgiIi~~~~~~~~~~~~~~~~~~iPvV~~~~~--~~~---~~~~---~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~ 189 (338)
T 3dbi_A 118 LRCDAIMIYPRFLSVDEIDDIIDAHSQPIMVLNRR--LRK---NSSH---SVWCDHKQTSFNAVAELINAGHQEIAFLTG 189 (338)
T ss_dssp TTCSEEEECCSSSCHHHHHHHHHHCSSCEEEESSC--CSS---SGGG---EECBCHHHHHHHHHHHHHHTTCCSEEEECC
T ss_pred CCCCEEEEeCCCCChHHHHHHHHcCCCCEEEEcCC--CCC---CCCC---EEEEChHHHHHHHHHHHHHCCCCEEEEEeC
Confidence 46777764333323455677788889999987765 222 1222 366777778888889998889999999987
Q ss_pred cCCCccccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcC--CceEEEEeccChHHHHHHHHHHHH
Q 003821 85 DDATNADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRT--ESRVFIILQSSLAMGIHLFREAKE 162 (793)
Q Consensus 85 dd~~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~vivvl~~~~~~~~~~l~~a~~ 162 (793)
..+......-.+.+.+.+++.|+++.....+.... ....-...+.++.+. .+++|+. .+...+..+++++++
T Consensus 190 ~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~----~~~~~~~~~~~ll~~~~~~~ai~~--~nd~~A~g~~~al~~ 263 (338)
T 3dbi_A 190 SMDSPTSIERLAGYKDALAQHGIALNEKLIANGKW----TPASGAEGVEMLLERGAKFSALVA--SNDDMAIGAMKALHE 263 (338)
T ss_dssp CTTCHHHHHHHHHHHHHHHHTTCCCCGGGEECCCS----SHHHHHHHHHHHHHTTCCCSEEEE--SSHHHHHHHHHHHHH
T ss_pred CCCCccHHHHHHHHHHHHHHCCCCCCcceEEeCCC----CHHHHHHHHHHHHcCCCCCeEEEE--CChHHHHHHHHHHHH
Confidence 64421114557778899999998654222222111 123344455555433 5777655 677788899999999
Q ss_pred cCCCCCCeEEEEe
Q 003821 163 MGLVGPDSVWVIA 175 (793)
Q Consensus 163 ~g~~~~~~~wi~~ 175 (793)
.|+.-|+-+-+++
T Consensus 264 ~G~~vP~di~vvg 276 (338)
T 3dbi_A 264 RGVAVPEQVSVIG 276 (338)
T ss_dssp TTCCTTTTCEEEE
T ss_pred cCCCCCCCeEEEE
Confidence 9997554344444
No 117
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=96.04 E-value=0.08 Score=53.44 Aligned_cols=146 Identities=10% Similarity=0.099 Sum_probs=88.2
Q ss_pred cceEEEE-cCCChhhHHHHHHhccCCCccEEeeeCCCCCCCCCCCCCCeEEEecCChHHHHHHHHHHHhhc-C-ceEEEE
Q 003821 5 KEVKVIV-GMETWGAATMVADIGSRAQVPVLSFAEPAIAPPLTSTRWPFLVRMANSSAEQITCTAALVGSY-N-WRKVII 81 (793)
Q Consensus 5 ~~V~aii-Gp~~s~~~~~va~i~~~~~iP~Is~~~~~~~~~l~~~~~~~~~r~~p~~~~~~~ai~~ll~~~-~-w~~vai 81 (793)
.+|.+|| .|..+.........+...++|+|..... .+. . +.+..+..++...++.++++|... | -+++++
T Consensus 56 ~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~~--~~~---~--~~~~~V~~D~~~~g~~a~~~L~~~~gg~~~I~~ 128 (283)
T 2ioy_A 56 QKVDVLLINPVDSDAVVTAIKEANSKNIPVITIDRS--ANG---G--DVVCHIASDNVKGGEMAAEFIAKALKGKGNVVE 128 (283)
T ss_dssp TTCSEEEECCSSTTTTHHHHHHHHHTTCCEEEESSC--CSS---S--CCSEEEEECHHHHHHHHHHHHHHHTTTCEEEEE
T ss_pred cCCCEEEEeCCchhhhHHHHHHHHHCCCeEEEecCC--CCC---c--ceeEEEecChHHHHHHHHHHHHHHcCCCceEEE
Confidence 4677765 3444333223334456789999987654 211 1 112245567777777888887665 5 899999
Q ss_pred EEEcCCCccccccHHHHHHHHHhc-CceeeEEeecCCCCCCCCChHHHHHHHHHhhcC--CceEEEEeccChHHHHHHHH
Q 003821 82 IYEDDATNADTGNLALLSEALQIS-NSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRT--ESRVFIILQSSLAMGIHLFR 158 (793)
Q Consensus 82 i~~dd~~G~~~~~~~~l~~~l~~~-g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~vivvl~~~~~~~~~~l~ 158 (793)
|...........-.+.+.+++++. |+++..... ... ..++-...+.++.+. .+++|+. ++...+..+++
T Consensus 129 i~g~~~~~~~~~R~~Gf~~al~~~~~~~~~~~~~-~~~-----~~~~~~~~~~~ll~~~~~~~ai~~--~nD~~A~g~~~ 200 (283)
T 2ioy_A 129 LEGIPGASAARDRGKGFDEAIAKYPDIKIVAKQA-ADF-----DRSKGLSVMENILQAQPKIDAVFA--QNDEMALGAIK 200 (283)
T ss_dssp EECCTTCHHHHHHHHHHHHHHTTCTTEEEEEEEE-CTT-----CHHHHHHHHHHHHHHCSCCCEEEE--SSHHHHHHHHH
T ss_pred EECCCCCccHHHHHHHHHHHHHhCCCCEEEeecc-CCC-----CHHHHHHHHHHHHHhCCCccEEEE--CCchHHHHHHH
Confidence 987543211134466788889888 877543221 111 123334445555433 4676554 67778889999
Q ss_pred HHHHcCC
Q 003821 159 EAKEMGL 165 (793)
Q Consensus 159 ~a~~~g~ 165 (793)
++++.|+
T Consensus 201 al~~~G~ 207 (283)
T 2ioy_A 201 AIEAANR 207 (283)
T ss_dssp HHHHTTC
T ss_pred HHHHCCC
Confidence 9999998
No 118
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=96.03 E-value=0.096 Score=53.35 Aligned_cols=149 Identities=13% Similarity=0.017 Sum_probs=91.1
Q ss_pred cceEEEE-cCCChhhHHHHHHhccCCCccEEeeeCCCCCCCCCCCCCCeEEEecCChHHHHHHHHHHHhh-cCce-EEEE
Q 003821 5 KEVKVIV-GMETWGAATMVADIGSRAQVPVLSFAEPAIAPPLTSTRWPFLVRMANSSAEQITCTAALVGS-YNWR-KVII 81 (793)
Q Consensus 5 ~~V~aii-Gp~~s~~~~~va~i~~~~~iP~Is~~~~~~~~~l~~~~~~~~~r~~p~~~~~~~ai~~ll~~-~~w~-~vai 81 (793)
++|.+|| .|..+.........+...++|+|..... .. .. +.+..+..++...+..+++++.. .|-+ ++++
T Consensus 60 ~~vdgiii~~~~~~~~~~~~~~~~~~~ipvV~~~~~--~~--~~---~~~~~v~~d~~~~g~~a~~~l~~~~g~~~~i~~ 132 (303)
T 3d02_A 60 RKVDAITIVPNDANVLEPVFKKARDAGIVVLTNESP--GQ--PS---ANWDVEIIDNEKFAAEYVEHMAKRMGGKGGYVI 132 (303)
T ss_dssp TTCSEEEECCSCHHHHHHHHHHHHHTTCEEEEESCT--TC--TT---CSEEEESSCHHHHHHHHHHHHHHHTTTCEEEEE
T ss_pred cCCCEEEEecCChHHHHHHHHHHHHCCCeEEEEecC--CC--CC---CceEEEecCHHHHHHHHHHHHHHHhCcCceEEE
Confidence 5677765 5555544444455666789999987643 11 11 22345777777788888888876 8887 9999
Q ss_pred EEEcCCCccccccHHHHHHHHHhcCceeeEEe-ecCCCCCCCCChHHHHHHHHHhhcC--CceEEEEeccChHHHHHHHH
Q 003821 82 IYEDDATNADTGNLALLSEALQISNSEIEYRL-VLPPISYLTDPKQFLQEKLLKLLRT--ESRVFIILQSSLAMGIHLFR 158 (793)
Q Consensus 82 i~~dd~~G~~~~~~~~l~~~l~~~g~~v~~~~-~~~~~~~~~~~~~~~~~~l~~l~~~--~~~vivvl~~~~~~~~~~l~ 158 (793)
+.............+.+.+.+++.+..+.... .+... ....+....+.++.+. .+++|+. .+...+..+++
T Consensus 133 i~g~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~ai~~--~~d~~a~g~~~ 206 (303)
T 3d02_A 133 YVGSLTVPQHNLWADLLVKYQKEHYPDMHEVTRRMPVA----ESVDDSRRTTLDLMKTYPDLKAVVS--FGSNGPIGAGR 206 (303)
T ss_dssp ECSCSSCHHHHHHHHHHHHHHHHHCTTEEESSSCBSCT----TCHHHHHHHHHHHHHHCTTEEEEEE--SSTTHHHHHHH
T ss_pred EecCCCCccHHHHHHHHHHHHHhhCCCCEEEEeecCCC----CCHHHHHHHHHHHHHhCCCCCEEEE--eCCcchhHHHH
Confidence 87653321114456778888887653322111 11111 1223445566665544 3565554 56667888999
Q ss_pred HHHHcCCC
Q 003821 159 EAKEMGLV 166 (793)
Q Consensus 159 ~a~~~g~~ 166 (793)
++++.|+.
T Consensus 207 al~~~g~~ 214 (303)
T 3d02_A 207 AVKEKRAK 214 (303)
T ss_dssp HHHHTTCT
T ss_pred HHHhcCCC
Confidence 99999986
No 119
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=96.01 E-value=0.056 Score=56.38 Aligned_cols=158 Identities=15% Similarity=0.111 Sum_probs=94.6
Q ss_pred ccceEEEEcCCChhhHHHHHHhc-cCCCccEEeeeCCCCCCCCCCCCCCeEEEecCChHHHHHHHHHHHhhcCceEEEEE
Q 003821 4 EKEVKVIVGMETWGAATMVADIG-SRAQVPVLSFAEPAIAPPLTSTRWPFLVRMANSSAEQITCTAALVGSYNWRKVIII 82 (793)
Q Consensus 4 ~~~V~aiiGp~~s~~~~~va~i~-~~~~iP~Is~~~~~~~~~l~~~~~~~~~r~~p~~~~~~~ai~~ll~~~~w~~vaii 82 (793)
+.+|.+||-....... ...+.+ ...++|+|..... .+. . ++...+..++..-+..++++|...|.+++++|
T Consensus 112 ~~~vdgiI~~~~~~~~-~~~~~l~~~~~iPvV~~~~~--~~~---~--~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i 183 (340)
T 1qpz_A 112 QKRVDGLLVMCSEYPE-PLLAMLEEYRHIPMVVMDWG--EAK---A--DFTDAVIDNAFEGGYMAGRYLIERGHREIGVI 183 (340)
T ss_dssp HTTCSEEEECCSCCCH-HHHHHHHTTTTSCEEEEEES--SCC---C--SSSEEEECCHHHHHHHHHHHHHHHTCCCEEEE
T ss_pred cCCCCEEEEeCCCCCh-HHHHHHHhhCCCCEEEEecc--cCC---C--CCCCEEEECHHHHHHHHHHHHHHCCCCEEEEE
Confidence 3567777642221111 122333 3379999988765 221 1 12224667777777888888877899999999
Q ss_pred EEcCCCccccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcC--CceEEEEeccChHHHHHHHHHH
Q 003821 83 YEDDATNADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRT--ESRVFIILQSSLAMGIHLFREA 160 (793)
Q Consensus 83 ~~dd~~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~vivvl~~~~~~~~~~l~~a 160 (793)
...........-.+.+.+.+++.|+.+.....+.... ...+-...+.++.+. .+++|+. .+...+..+++++
T Consensus 184 ~g~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~----~~~~~~~~~~~ll~~~~~~~ai~~--~nd~~A~g~~~al 257 (340)
T 1qpz_A 184 PGPLERNTGAGRLAGFMKAMEEAMIKVPESWIVQGDF----EPESGYRAMQQILSQPHRPTAVFC--GGDIMAMGALCAA 257 (340)
T ss_dssp CCCTTSHHHHHHHHHHHHHHHHTTCCCCGGGBCCCCS----SHHHHHHHHHHHHTSSSCCSEEEE--SSHHHHHHHHHHH
T ss_pred eCCCccccHHHHHHHHHHHHHHCCCCCChhheEeCCC----CHHHHHHHHHHHHcCCCCCcEEEE--CCHHHHHHHHHHH
Confidence 8654321114556778889999997653221121111 123344455565543 5787665 6677888899999
Q ss_pred HHcCCCCCCeEEEEe
Q 003821 161 KEMGLVGPDSVWVIA 175 (793)
Q Consensus 161 ~~~g~~~~~~~wi~~ 175 (793)
++.|+.-|+-+-+++
T Consensus 258 ~~~G~~vP~disvig 272 (340)
T 1qpz_A 258 DEMGLRVPQDVSLIG 272 (340)
T ss_dssp HHTTCCTTTTCEEEE
T ss_pred HHcCCCCCCCeEEEe
Confidence 999997554333443
No 120
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=96.00 E-value=0.018 Score=51.25 Aligned_cols=72 Identities=19% Similarity=0.147 Sum_probs=57.3
Q ss_pred HHHHHHhhhcccCCCCCCCccccchhHHHHHHHHHhhcc-cc-ccccchhhHHHHHHHHHHHHHHHHHHhhhheeeee
Q 003821 464 TMSVVWFLEHRWNPEFNGPWNIQIGTALWFTFSSLFFAH-RE-RIYSNLTRLVVVVWLFVVLILNSSYTASLSSMLTV 539 (793)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~-~~~s~s~R~l~~~w~~~~lil~~~Yta~L~s~Lt~ 539 (793)
.+.+++.+++..+ ++...++.+++|+++.++...| ++ .|.+..+|++.++|.++++.+.+...+.+++.+..
T Consensus 22 ~a~~~~~~e~~~~----~~~~~~~~~a~yf~~~T~tTvGyGd~~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~~~~ 95 (139)
T 3eff_K 22 GSYLAVLAERGAP----GAQLITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVG 95 (139)
T ss_dssp HHHHHHHTTSSCT----TCCCCCHHHHHHHHHHHHTTCCCSSSCCCSSHHHHHHHHHHHHHHHHHHHHHHHHTTTTTH
T ss_pred HHHHHHHHhcCCC----CcccCCHHHHHHHHheeeecccCCCCcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666432 2233458999999999999888 66 47999999999999999999999999999988743
No 121
>3uif_A Sulfonate ABC transporter, periplasmic sulfonate- protein SSUA; structural genomics; 2.60A {Methylobacillus flagellatus}
Probab=96.00 E-value=0.015 Score=61.00 Aligned_cols=108 Identities=12% Similarity=-0.071 Sum_probs=60.4
Q ss_pred CCCChHHhhhCCCcccccCchHHHHHHHh---hcCCCCccccc-cCCHHHHHHHhhcCceEEEEechhhHHHHHhccCCc
Q 003821 545 NVTDIGWLKASNLNVGFDGDSFVRNYLEN---VLGFKPENILK-VDHEYKYITDFESNRIAAAFLELSYERAFLSQHCKE 620 (793)
Q Consensus 545 ~i~sl~dL~~~~~~~g~~~~~~~~~~l~~---~~~~~~~~~~~-~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~c~~ 620 (793)
+|++++||+ |.+||+..++.....+.. ..+.....+.. ..+..+...+|.+|++|+++...+............
T Consensus 110 ~i~s~~DLk--Gk~I~v~~gs~~~~~~~~~l~~~Gl~~~~v~~v~~~~~~~~~al~~G~vDa~~~~~~~~~~~~~g~~~~ 187 (348)
T 3uif_A 110 TAKSIKDLK--GKKIALHRGRPWELAFSNLLQSEGLTFKDFKIVNVNPQVGAAALASGTVDGFFSLFDSYILEDRGVGKI 187 (348)
T ss_dssp CCCSGGGGT--TSEEEECTTSTHHHHHHHHHHHTTCCGGGSEEECCCHHHHHHHHHHTSSSEEEESTTHHHHHHTTSEEE
T ss_pred CCCCHHHcC--CCEEEecCCChHHHHHHHHHHHcCCCHHHeEEEECCHHHHHHHHHcCCCCEEEechHHHHHHhcCCcEE
Confidence 589999998 889998755544333222 22333222322 225678899999999999988776654322222121
Q ss_pred eEEeCccc--cccceEEEecCC----Cc-ChHHHHHHHHhh
Q 003821 621 YTATIPTY--RFGGFAFVFQKG----SP-LAADFSEAILKL 654 (793)
Q Consensus 621 ~~~~~~~~--~~~~~~~~~~k~----sp-l~~~in~~i~~l 654 (793)
+....... .....+++++++ .| ....|.+++.+.
T Consensus 188 l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~a~~~a 228 (348)
T 3uif_A 188 IWSTKTAPVDWKLMGGVWARNDFVKQNPEITQAIVTAYLKS 228 (348)
T ss_dssp EEEGGGSCGGGSCCEEEEEEHHHHHHCHHHHHHHHHHHHHH
T ss_pred EEeccccCCCCcceeEEEECHHHHHHCHHHHHHHHHHHHHH
Confidence 21112111 122346677665 44 555565555544
No 122
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=95.97 E-value=0.024 Score=58.97 Aligned_cols=150 Identities=14% Similarity=0.096 Sum_probs=94.0
Q ss_pred ccceEEEEcCCChhhHHHHHHhccCCCccEEeeeCCCCCCCCCCCCCCeEEEecCChHHHHHHHHHHHhhcCceEEEEEE
Q 003821 4 EKEVKVIVGMETWGAATMVADIGSRAQVPVLSFAEPAIAPPLTSTRWPFLVRMANSSAEQITCTAALVGSYNWRKVIIIY 83 (793)
Q Consensus 4 ~~~V~aiiGp~~s~~~~~va~i~~~~~iP~Is~~~~~~~~~l~~~~~~~~~r~~p~~~~~~~ai~~ll~~~~w~~vaii~ 83 (793)
+.+|.+||-........ ....+...++|+|..... .+. ...+ .+..++..-+..++++|...|.++|++|.
T Consensus 114 ~~~vdgiI~~~~~~~~~-~~~~l~~~~iPvV~~~~~--~~~---~~~~---~V~~D~~~~~~~a~~~L~~~G~~~I~~i~ 184 (332)
T 2hsg_A 114 GKQVDGIIFMSGNVTEE-HVEELKKSPVPVVLAASI--EST---NQIP---SVTIDYEQAAFDAVQSLIDSGHKNIAFVS 184 (332)
T ss_dssp CCSSCCEEECCSSCCHH-HHHHHTTSSSCEEEESCC--CSC---TTSC---EEEECHHHHHHHHHHHHHTTTCSCEEEEE
T ss_pred hCCCcEEEEecCCCCHH-HHHHHHhCCCCEEEEccc--cCC---CCCC---EEEEChHHHHHHHHHHHHHCCCCEEEEEe
Confidence 45677776433222222 333455689999988654 221 2222 45677777778888888888999999998
Q ss_pred EcC-CCccccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcC--CceEEEEeccChHHHHHHHHHH
Q 003821 84 EDD-ATNADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRT--ESRVFIILQSSLAMGIHLFREA 160 (793)
Q Consensus 84 ~dd-~~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~vivvl~~~~~~~~~~l~~a 160 (793)
... +......-.+.+.+++++.|+++.....+.... ...+-...+.++.+. .+++|+. .+...+..+++++
T Consensus 185 ~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~----~~~~~~~~~~~ll~~~~~~~ai~~--~nd~~A~g~~~al 258 (332)
T 2hsg_A 185 GTLEEPINHAKKVKGYKRALTESGLPVRDSYIVEGDY----TYDSGIEAVEKLLEEDEKPTAIFV--GTDEMALGVIHGA 258 (332)
T ss_dssp SCTTSHHHHTTHHHHHHHHHHTTTCCCCGGGEEECCS----SHHHHHHHHHHHHHSSSCCSEEEE--SSHHHHHHHHHHH
T ss_pred CCcccCccHHHHHHHHHHHHHHcCCCCChheEEeCCC----CHHHHHHHHHHHHcCCCCCeEEEE--CChHHHHHHHHHH
Confidence 765 321115567889999999998653221111111 123334455555444 5777665 6777888899999
Q ss_pred HHcCCCCC
Q 003821 161 KEMGLVGP 168 (793)
Q Consensus 161 ~~~g~~~~ 168 (793)
++.|+.-|
T Consensus 259 ~~~G~~vP 266 (332)
T 2hsg_A 259 QDRGLNVP 266 (332)
T ss_dssp HHTTCCHH
T ss_pred HHcCCCCC
Confidence 99998644
No 123
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=95.91 E-value=0.018 Score=58.95 Aligned_cols=150 Identities=9% Similarity=-0.035 Sum_probs=94.2
Q ss_pred cceEEEE-cCCChhhHHHHHHhccCCCccEEeeeCCCCCCCCCCCCCCeEEEecCChHHHHHHHHHHHhhcC-----ceE
Q 003821 5 KEVKVIV-GMETWGAATMVADIGSRAQVPVLSFAEPAIAPPLTSTRWPFLVRMANSSAEQITCTAALVGSYN-----WRK 78 (793)
Q Consensus 5 ~~V~aii-Gp~~s~~~~~va~i~~~~~iP~Is~~~~~~~~~l~~~~~~~~~r~~p~~~~~~~ai~~ll~~~~-----w~~ 78 (793)
.+|.+|| .|............+. .+||+|..... .+.......+.+..+.+++...+..+++++...+ -++
T Consensus 62 ~~vdgiii~~~~~~~~~~~~~~~~-~~iPvV~~~~~--~~~~~~~~~~~~~~V~~D~~~~g~~a~~~l~~~g~~~~~~~~ 138 (304)
T 3o1i_D 62 WGANAIILGTVDPHAYEHNLKSWV-GNTPVFATVNQ--LDLDEEQSTLLKGEVGVDWYWMGYEAGKYLAERHPKGSGKTN 138 (304)
T ss_dssp HTCSEEEECCSSTTSSTTTHHHHT-TTSCEEECSSC--CCCCTTTGGGEEEECCCCHHHHHHHHHHHHHTTSBTTTCCEE
T ss_pred cCCCEEEEeCCChhHHHHHHHHHc-CCCCEEEecCC--CcccccCCCceEEEEecCHHHHHHHHHHHHHHhcccCCCCCE
Confidence 4566665 4544442233344455 89999998655 2211222334556788888888888999998888 899
Q ss_pred EEEEEEcCCCccccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhh-cCCceEEEEeccChHHHHHHH
Q 003821 79 VIIIYEDDATNADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLL-RTESRVFIILQSSLAMGIHLF 157 (793)
Q Consensus 79 vaii~~dd~~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~-~~~~~vivvl~~~~~~~~~~l 157 (793)
|+++...........-.+.+.+.+++.|+++.... .... ....-...+.++. ...+++ |. ++...+..++
T Consensus 139 i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~-~~~~-----~~~~~~~~~~~~l~~~~~~a-i~--~~d~~a~g~~ 209 (304)
T 3o1i_D 139 IALLLGPRTRGGTKPVTTGFYEAIKNSDIHIVDSF-WADN-----DKELQRNLVQRVIDMGNIDY-IV--GSAVAIEAAI 209 (304)
T ss_dssp EEEECCCC-----CHHHHHHHHTTTTBTEEEEECC-CCCS-----CHHHHHHHHHHHHHHSCCSE-EE--ECHHHHHHHH
T ss_pred EEEEECCCCcchHHHHHHHHHHHHhcCCCEEEEee-cCCC-----cHHHHHHHHHHHHcCCCCCE-EE--ecCcchHHHH
Confidence 99997654321114557888899999998776432 1111 1233334444433 235777 44 5777888899
Q ss_pred HHHHHcCCC
Q 003821 158 REAKEMGLV 166 (793)
Q Consensus 158 ~~a~~~g~~ 166 (793)
+++++.|+.
T Consensus 210 ~al~~~g~~ 218 (304)
T 3o1i_D 210 SELRSADKT 218 (304)
T ss_dssp HHHTTTTCG
T ss_pred HHHHhcCCC
Confidence 999999986
No 124
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=95.89 E-value=0.088 Score=54.22 Aligned_cols=147 Identities=9% Similarity=0.014 Sum_probs=89.3
Q ss_pred cceEEE-EcCCChhhHHHHHHhccCCCccEEeeeCCCCCCCCCCCCCCeEEEecCChHHHHHHHHHHHhh---cCceEEE
Q 003821 5 KEVKVI-VGMETWGAATMVADIGSRAQVPVLSFAEPAIAPPLTSTRWPFLVRMANSSAEQITCTAALVGS---YNWRKVI 80 (793)
Q Consensus 5 ~~V~ai-iGp~~s~~~~~va~i~~~~~iP~Is~~~~~~~~~l~~~~~~~~~r~~p~~~~~~~ai~~ll~~---~~w~~va 80 (793)
++|.+| +.|..+.....+...+...+||+|.+... .+. ... ..+.+..++...++.++++|.. .|-++++
T Consensus 59 ~~vdgiii~~~~~~~~~~~~~~a~~~gipvV~~d~~--~~~--~~~--~~~v~~~D~~~~g~~~~~~L~~~~~~g~~~i~ 132 (316)
T 1tjy_A 59 QGYDAIIVSAVSPDGLCPALKRAMQRGVKILTWDSD--TKP--ECR--SYYINQGTPKQLGSMLVEMAAHQVDKEKAKVA 132 (316)
T ss_dssp TTCSEEEECCSSSSTTHHHHHHHHHTTCEEEEESSC--CCG--GGC--SEEEESCCHHHHHHHHHHHHHHHHCSSSEEEE
T ss_pred cCCCEEEEeCCCHHHHHHHHHHHHHCcCEEEEecCC--CCC--CCc--eEEEecCCHHHHHHHHHHHHHHHcCCCCCEEE
Confidence 567765 46666554455556677789999998654 211 111 2222256777777888887765 5789999
Q ss_pred EEEEcCCCccccccHHHHHHHHHhc--CceeeEEeecCCCCCCCCChHHHHHHHHHhhcC--CceEEEEeccChHHHHHH
Q 003821 81 IIYEDDATNADTGNLALLSEALQIS--NSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRT--ESRVFIILQSSLAMGIHL 156 (793)
Q Consensus 81 ii~~dd~~G~~~~~~~~l~~~l~~~--g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~vivvl~~~~~~~~~~ 156 (793)
+|.............+.+.+.+++. ++++..... ... ......+.+.++.+. .+++|+. .+...+..+
T Consensus 133 ~i~g~~~~~~~~~r~~g~~~~l~~~~~~~~~~~~~~-~~~-----~~~~~~~~~~~ll~~~~~~~aI~~--~nD~~A~g~ 204 (316)
T 1tjy_A 133 FFYSSPTVTDQNQWVKEAKAKISQEHPGWEIVTTQF-GYN-----DATKSLQTAEGIIKAYPDLDAIIA--PDANALPAA 204 (316)
T ss_dssp EEESCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEE-CTT-----CHHHHHHHHHHHHHHCSSCCEEEE--CSTTHHHHH
T ss_pred EEEcCCCChhHHHHHHHHHHHHHhhCCCcEEEEecc-CCC-----CHHHHHHHHHHHHHhCCCCCEEEE--CCCccHHHH
Confidence 9986533211145567778888765 555543221 111 123344555555443 4566554 566778889
Q ss_pred HHHHHHcCCC
Q 003821 157 FREAKEMGLV 166 (793)
Q Consensus 157 l~~a~~~g~~ 166 (793)
++++++.| .
T Consensus 205 ~~al~~~G-~ 213 (316)
T 1tjy_A 205 AQAAENLK-R 213 (316)
T ss_dssp HHHHHHTT-C
T ss_pred HHHHHHcC-C
Confidence 99999999 5
No 125
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=95.88 E-value=0.028 Score=57.10 Aligned_cols=157 Identities=9% Similarity=0.050 Sum_probs=97.4
Q ss_pred ccceEEEEcCCChhhHHHHHHhccCCCccEEeeeCCCCCCCCCCCCCCeEEEecCChHHHHHHHHHHHhhcCceEEEEEE
Q 003821 4 EKEVKVIVGMETWGAATMVADIGSRAQVPVLSFAEPAIAPPLTSTRWPFLVRMANSSAEQITCTAALVGSYNWRKVIIIY 83 (793)
Q Consensus 4 ~~~V~aiiGp~~s~~~~~va~i~~~~~iP~Is~~~~~~~~~l~~~~~~~~~r~~p~~~~~~~ai~~ll~~~~w~~vaii~ 83 (793)
+.+|.+||-..... .......+...+||+|..... .+. .. +..+..++...+..+++++...|-++++++.
T Consensus 62 ~~~vdgiIi~~~~~-~~~~~~~~~~~~iPvV~~~~~--~~~---~~---~~~V~~D~~~~g~~a~~~L~~~G~~~i~~i~ 132 (291)
T 3egc_A 62 ERRVDGLILAPSEG-EHDYLRTELPKTFPIVAVNRE--LRI---PG---CGAVLSENVRGARTAVEYLIARGHTRIGAIV 132 (291)
T ss_dssp HTTCSEEEECCCSS-CCHHHHHSSCTTSCEEEESSC--CCC---TT---CEEEEECHHHHHHHHHHHHHHTTCCSEEEEC
T ss_pred HCCCCEEEEeCCCC-ChHHHHHhhccCCCEEEEecc--cCC---CC---CCEEEECcHHHHHHHHHHHHHcCCCEEEEEe
Confidence 35677776322222 334556677889999988765 221 12 2356778888888899999888999999998
Q ss_pred EcCCCccccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhc--CCceEEEEeccChHHHHHHHHHHH
Q 003821 84 EDDATNADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLR--TESRVFIILQSSLAMGIHLFREAK 161 (793)
Q Consensus 84 ~dd~~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~vivvl~~~~~~~~~~l~~a~ 161 (793)
..........-.+.+.+.+++.|+.+........... . ......+.++.+ ..+++|+. .+...+..++++++
T Consensus 133 ~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~---~-~~~~~~~~~~l~~~~~~~ai~~--~~d~~a~g~~~al~ 206 (291)
T 3egc_A 133 GSAGLMTSRERLKGFRAAMSAAGLPVRQEWIAAGGVR---A-DNGRDGAIKVLTGADRPTALLT--SSHRITEGAMQALN 206 (291)
T ss_dssp SCTTSHHHHHHHHHHHHHHHHTTCCCCGGGEEC----------CCHHHHHHHHTC-CCCSEEEE--SSHHHHHHHHHHHH
T ss_pred CCCCCcCHHHHHHHHHHHHHHcCCCCCHHHeEeCCCC---h-hHHHHHHHHHHhCCCCCcEEEE--CCcHHHHHHHHHHH
Confidence 7654211255677888999999876532211111110 0 112233444432 35777665 77778889999999
Q ss_pred HcCCCCCCeEEEEe
Q 003821 162 EMGLVGPDSVWVIA 175 (793)
Q Consensus 162 ~~g~~~~~~~wi~~ 175 (793)
+.|+.-++-+-+++
T Consensus 207 ~~g~~vP~di~vvg 220 (291)
T 3egc_A 207 VLGLRYGPDVEIVS 220 (291)
T ss_dssp HHTCCBTTTBEEEE
T ss_pred HcCCCCCCceEEEE
Confidence 99997543344444
No 126
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=95.87 E-value=0.056 Score=55.28 Aligned_cols=154 Identities=14% Similarity=0.114 Sum_probs=96.4
Q ss_pred ccceEEEEcCCChhhHH-HHHHhccCCCccEEeeeCCCCCCCCCCCCCCeEEEecCChHHHHHHHHHHHhhcCceEEEEE
Q 003821 4 EKEVKVIVGMETWGAAT-MVADIGSRAQVPVLSFAEPAIAPPLTSTRWPFLVRMANSSAEQITCTAALVGSYNWRKVIII 82 (793)
Q Consensus 4 ~~~V~aiiGp~~s~~~~-~va~i~~~~~iP~Is~~~~~~~~~l~~~~~~~~~r~~p~~~~~~~ai~~ll~~~~w~~vaii 82 (793)
+.+|.|||-........ .+..+.+ ++|+|..... .+. ..+ .+..++..-+...+++|...|-+++++|
T Consensus 69 ~~~vdgiI~~~~~~~~~~~~~~l~~--~iPvV~i~~~--~~~----~~~---~V~~D~~~~g~~a~~~L~~~G~~~I~~i 137 (303)
T 3kke_A 69 EGRVDGVLLQRREDFDDDMLAAVLE--GVPAVTINSR--VPG----RVG---SVILDDQKGGGIATEHLITLGHSRIAFI 137 (303)
T ss_dssp SCSSSEEEECCCTTCCHHHHHHHHT--TSCEEEESCC--CTT----CCC---EEEECHHHHHHHHHHHHHHTTCCSEEEE
T ss_pred hCCCcEEEEecCCCCcHHHHHHHhC--CCCEEEECCc--CCC----CCC---EEEECcHHHHHHHHHHHHHCCCCeEEEE
Confidence 35677766322222223 4444444 9999988765 221 233 3667777788888898888899999999
Q ss_pred EEcCCCccccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHh-----hcC--CceEEEEeccChHHHHH
Q 003821 83 YEDDATNADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKL-----LRT--ESRVFIILQSSLAMGIH 155 (793)
Q Consensus 83 ~~dd~~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l-----~~~--~~~vivvl~~~~~~~~~ 155 (793)
...........-.+.+.+.+++.|+.+.......... ..+.-...+.++ .+. .+++|+. ++...+..
T Consensus 138 ~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~l~~~~~~~ai~~--~nd~~A~g 211 (303)
T 3kke_A 138 SGTAIHDTAQRRKEGYLETLASAGLRSEAAWVVDAGW----EADAGSAALNTLYRGANLGKPDGPTAVVV--ASVNAAVG 211 (303)
T ss_dssp ESCSSCHHHHHHHHHHHHHHHHTTCCCCGGGEEECCS----SHHHHHHHHHHHHHHHCTTSTTSCSEEEE--SSHHHHHH
T ss_pred eCCCcCccHHHHHHHHHHHHHHcCCCCCcceEEecCC----ChHHHHHHHHHhcchhhhcCCCCCcEEEE--CCHHHHHH
Confidence 8765422114567788899999998754211111111 123344556666 443 4777655 67778889
Q ss_pred HHHHHHHcCCCCCCeEEEE
Q 003821 156 LFREAKEMGLVGPDSVWVI 174 (793)
Q Consensus 156 ~l~~a~~~g~~~~~~~wi~ 174 (793)
+++++++.|+.-|+-+-++
T Consensus 212 ~~~al~~~G~~vP~di~vi 230 (303)
T 3kke_A 212 ALSTALRLGLRVPEDLSIV 230 (303)
T ss_dssp HHHHHHHTTCCTTTTCEEE
T ss_pred HHHHHHHcCCCCCCceEEE
Confidence 9999999999755333333
No 127
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=95.80 E-value=0.088 Score=53.33 Aligned_cols=147 Identities=6% Similarity=0.014 Sum_probs=94.9
Q ss_pred cceEEEEc-CCChhhHHHHHHhccCCCccEEeeeCCCCCCCCCCCCCCeEEEecCChHHHHHHHHHHHhh-c-Cce----
Q 003821 5 KEVKVIVG-METWGAATMVADIGSRAQVPVLSFAEPAIAPPLTSTRWPFLVRMANSSAEQITCTAALVGS-Y-NWR---- 77 (793)
Q Consensus 5 ~~V~aiiG-p~~s~~~~~va~i~~~~~iP~Is~~~~~~~~~l~~~~~~~~~r~~p~~~~~~~ai~~ll~~-~-~w~---- 77 (793)
.+|.+||- |............+...+||+|..... .+. . +.+..+..++...+..+++++.. . |-+
T Consensus 63 ~~vdgiI~~~~~~~~~~~~~~~~~~~~iPvV~~~~~--~~~--~---~~~~~V~~D~~~~g~~~~~~l~~~~~g~~~~~~ 135 (293)
T 3l6u_A 63 LKVDAIFITTLDDVYIGSAIEEAKKAGIPVFAIDRM--IRS--D---AVVSSITSNNQMIGEQLASYIKNELIKQTGRST 135 (293)
T ss_dssp TTCSEEEEECSCTTTTHHHHHHHHHTTCCEEEESSC--CCC--T---TCSEEEEECHHHHHHHHHHHHHHHHHHHHSCSC
T ss_pred cCCCEEEEecCChHHHHHHHHHHHHcCCCEEEecCC--CCC--C---cceeEEecCHHHHHHHHHHHHHHHhccCCCCCC
Confidence 45666553 344443334455666779999998765 222 1 12345677888888888888866 5 666
Q ss_pred -EEEEEEEcCCCccccccHHHHHHHHHhc-CceeeEEeecCCCCCCCCChHHHHHHHHHhhcC--CceEEEEeccChHHH
Q 003821 78 -KVIIIYEDDATNADTGNLALLSEALQIS-NSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRT--ESRVFIILQSSLAMG 153 (793)
Q Consensus 78 -~vaii~~dd~~G~~~~~~~~l~~~l~~~-g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~vivvl~~~~~~~ 153 (793)
+|++|...........-.+.+.+.+++. |+++..... ... ...+....+.++.+. .+++|+. ++...+
T Consensus 136 ~~i~~i~g~~~~~~~~~R~~gf~~~l~~~~g~~~~~~~~-~~~-----~~~~~~~~~~~~l~~~~~~~ai~~--~~d~~a 207 (293)
T 3l6u_A 136 GRIVEITGTANVYTTNERHRGFLKGIENEPTLSIVDSVS-GNY-----DPVTSERVMRQVIDSGIPFDAVYC--HNDDIA 207 (293)
T ss_dssp EEEEEEECSTTCHHHHHHHHHHHHHHTTCTTEEEEEEEE-CTT-----CHHHHHHHHHHHHHTTCCCSEEEE--SSHHHH
T ss_pred ceEEEEECCCCCchHHHHHHHHHHHHHhCCCcEEeeecc-CCC-----CHHHHHHHHHHHHHhCCCCCEEEE--CCchHH
Confidence 9999986544221145677888999998 888765422 211 123445555665544 4676554 677778
Q ss_pred HHHHHHHHHcCCC
Q 003821 154 IHLFREAKEMGLV 166 (793)
Q Consensus 154 ~~~l~~a~~~g~~ 166 (793)
..+++++++.|+.
T Consensus 208 ~g~~~al~~~g~~ 220 (293)
T 3l6u_A 208 MGVLEALKKAKIS 220 (293)
T ss_dssp HHHHHHHHHTTCC
T ss_pred HHHHHHHHhCCCC
Confidence 8999999999986
No 128
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=95.74 E-value=0.1 Score=53.33 Aligned_cols=159 Identities=11% Similarity=0.033 Sum_probs=93.1
Q ss_pred cceEEEEcCCCh-hhHHHHHHhccCCCccEEeeeCCCCCCCCCCCCCCeEEEecCChHHHHHHHHHHHhhcC---ceEEE
Q 003821 5 KEVKVIVGMETW-GAATMVADIGSRAQVPVLSFAEPAIAPPLTSTRWPFLVRMANSSAEQITCTAALVGSYN---WRKVI 80 (793)
Q Consensus 5 ~~V~aiiGp~~s-~~~~~va~i~~~~~iP~Is~~~~~~~~~l~~~~~~~~~r~~p~~~~~~~ai~~ll~~~~---w~~va 80 (793)
.+|.+||-.... .........+...++|+|..... .+... ..+++..+..++...+..++++|...| -++|+
T Consensus 57 ~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~~--~~~~~--~~~~~~~V~~D~~~~g~~a~~~L~~~g~g~~~~I~ 132 (306)
T 2vk2_A 57 QGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRS--IDVKD--KSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVV 132 (306)
T ss_dssp HTCSEEEECCSSSSSCHHHHHHHHHTTCCEEEESSC--CCCSC--GGGSSEEEECCHHHHHHHHHHHHHHHHTTSCEEEE
T ss_pred cCCCEEEEeCCChhhHHHHHHHHHHCCCCEEEecCC--CCCCC--ccceEEEEecCHHHHHHHHHHHHHHhcCCCCCeEE
Confidence 467777643332 22123334455689999988754 22211 011234567777777888888887766 79999
Q ss_pred EEEEcCCCccccccHHHHHHHHHhcCc-eeeEEeecCCCCCCCCChHHHHHHHHHhhc-----CCceEEEEeccChHHHH
Q 003821 81 IIYEDDATNADTGNLALLSEALQISNS-EIEYRLVLPPISYLTDPKQFLQEKLLKLLR-----TESRVFIILQSSLAMGI 154 (793)
Q Consensus 81 ii~~dd~~G~~~~~~~~l~~~l~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~-----~~~~vivvl~~~~~~~~ 154 (793)
+|...........-.+.+++.+++.|. ++... ..... ...+-...+.++.+ ..+++|+. .+...+.
T Consensus 133 ~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~-~~~~~-----~~~~~~~~~~~ll~~~~~~~~~~ai~~--~nd~~A~ 204 (306)
T 2vk2_A 133 ELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRS-QSGDF-----TRSKGKEVMESFIKAENNGKNICMVYA--HNDDMVI 204 (306)
T ss_dssp EEECSTTCHHHHHHHHHHHHHTTTCTTEEEEEE-EECTT-----CHHHHHHHHHHHHHHTTTTTTCCEEEE--SSHHHHH
T ss_pred EEEcCCCChhHHHHHHHHHHHHhhCCCeEEEEe-ccCCC-----cHHHHHHHHHHHHHhCCCCCCeeEEEE--CCchHHH
Confidence 998764321114456778889988885 32221 11111 11233344455433 35777665 6677788
Q ss_pred HHHHHHHHcCCCCCCeEEEEe
Q 003821 155 HLFREAKEMGLVGPDSVWVIA 175 (793)
Q Consensus 155 ~~l~~a~~~g~~~~~~~wi~~ 175 (793)
.+++++++.|+.-|+-+-+++
T Consensus 205 g~~~al~~~G~~vP~di~vig 225 (306)
T 2vk2_A 205 GAIQAIKEAGLKPGKDILTGS 225 (306)
T ss_dssp HHHHHHHHTTCCBTTTBEEEE
T ss_pred HHHHHHHHcCCCCCCCeEEEe
Confidence 899999999986443333333
No 129
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=95.72 E-value=0.033 Score=49.29 Aligned_cols=55 Identities=9% Similarity=0.262 Sum_probs=49.7
Q ss_pred cchhHHHHHHHHHhhcc-cc-ccccchhhHHHHHHHHHHHHHHHHHHhhhheeeeec
Q 003821 486 QIGTALWFTFSSLFFAH-RE-RIYSNLTRLVVVVWLFVVLILNSSYTASLSSMLTVQ 540 (793)
Q Consensus 486 ~~~~~~~~~~~~l~~~~-~~-~~~s~s~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~ 540 (793)
++.+++|+++.++...| ++ .|.+..+|++.++|+++++.+.+...+.+++.+...
T Consensus 43 ~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~g~~~~~~~~~~i~~~~~~~ 99 (137)
T 4h33_A 43 NYPDALWWAIVTATTVGYGDIVPVTPIGRILASIMMLFGIAFIGMITSTITNFFRCK 99 (137)
T ss_dssp SHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTT
T ss_pred CHHHHHHHHHHHHHcccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48899999999999988 76 579999999999999999999999999999988543
No 130
>3qsl_A Putative exported protein; unknown, structural genomics, PSI-biology, midwest center FO structural genomics, MCSG, unknown function; HET: MSE CIT; 2.00A {Bordetella bronchiseptica}
Probab=95.64 E-value=0.057 Score=56.30 Aligned_cols=70 Identities=17% Similarity=0.119 Sum_probs=47.8
Q ss_pred CCCChHHhhhCCCccccc-CchHHHH----HHHhhcCCC--CccccccCCHHHHHHHhhcCceEEEEechhhHHHHHhcc
Q 003821 545 NVTDIGWLKASNLNVGFD-GDSFVRN----YLENVLGFK--PENILKVDHEYKYITDFESNRIAAAFLELSYERAFLSQH 617 (793)
Q Consensus 545 ~i~sl~dL~~~~~~~g~~-~~~~~~~----~l~~~~~~~--~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~ 617 (793)
+|++++||. |.++++. .++.... +++. .+.. ..++..+....+...++.+|++|+++...+.......+.
T Consensus 129 ~i~s~~DL~--Gk~i~~~~~gs~~~~~~~~~l~~-~G~~~~~v~~~~~~~~~~~~~al~~G~vDa~~~~~p~~~~~~~~g 205 (346)
T 3qsl_A 129 GYKGPADLK--GRKIGVTAPGSSTNMVVNFFLAK-HGLKASDVSFIGVGAGAGAVTALRSGQIDAISNTDPVVSMLETSG 205 (346)
T ss_dssp TCCSGGGGT--TCEEEESSTTSHHHHHHHHHHHH-TTCCGGGSEEEECCSSHHHHHHHHHTSCSEEEEETTHHHHHHHTT
T ss_pred CCCChHHcC--CCEEEECCCCcHHHHHHHHHHHH-cCCCHHHeEEEecCCcHHHHHHHHcCCccEEEecchhHHHHHhCC
Confidence 489999998 8899986 4543332 2332 2332 233455566678999999999999998877776555443
No 131
>3un6_A Hypothetical protein saouhsc_00137; structural genomics, center for structural genomics of infec diseases, csgid; 2.01A {Staphylococcus aureus subsp}
Probab=95.58 E-value=0.01 Score=62.18 Aligned_cols=121 Identities=8% Similarity=0.062 Sum_probs=71.4
Q ss_pred CCCChHHh-hhCCCcccccCchHHHH-----HHHhhcCCCCc--cccccCCHHHHHHHhhcCceEEEEechhhHHHHHhc
Q 003821 545 NVTDIGWL-KASNLNVGFDGDSFVRN-----YLENVLGFKPE--NILKVDHEYKYITDFESNRIAAAFLELSYERAFLSQ 616 (793)
Q Consensus 545 ~i~sl~dL-~~~~~~~g~~~~~~~~~-----~l~~~~~~~~~--~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~ 616 (793)
+|++++|| + |.++|+..++.... +++. .+.... ++..+ +..+...++.+|++|+++...++......+
T Consensus 144 ~I~s~~DL~k--Gk~i~v~~~~s~~~~~~~~~l~~-~Gl~~~dv~~~~~-~~~~~~~al~~G~vDa~~~~~p~~~~~~~~ 219 (341)
T 3un6_A 144 HLNEFNNNGD--DYHFGIPHRYSTHYLLLEELRKQ-LKIKPGHFSYHEM-SPAEMPAALSEHRITGYSVAEPFGALGEKL 219 (341)
T ss_dssp CGGGCCSSSS--CEEEEESCSSSHHHHHHHHHHHH-TTCCTTSEEEEEC-CGGGHHHHHHTTSCSEEEEETTHHHHHHHS
T ss_pred CCCCHHHhCC--CCEEEECCCCCHHHHHHHHHHHH-cCCCHHHeEEEEc-ChHHHHHHHHcCCCCEEEecCCHHHHHHhc
Confidence 58999999 7 89999865332222 3332 333322 33333 467888999999999999988887666555
Q ss_pred cCCceEE-eCccccc-cceEEEecCC----Cc-----ChHHHHHHHHhhhccCchHHHHHHHcC
Q 003821 617 HCKEYTA-TIPTYRF-GGFAFVFQKG----SP-----LAADFSEAILKLSENGELRSLEEKWFA 669 (793)
Q Consensus 617 ~c~~~~~-~~~~~~~-~~~~~~~~k~----sp-----l~~~in~~i~~l~e~G~~~~~~~~w~~ 669 (793)
....... ..+.... ....++++++ .| +...+++++..+.+++.-.++..+|+.
T Consensus 220 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~~~a~~~a~~~~~~~~~~~~~~~~~~~ 283 (341)
T 3un6_A 220 GKGKTLKHGDDVIPDAYCCVLVLRGELLDQHKDVAQAFVQDYKKSGFKMNDRKQSVDIMTHHFK 283 (341)
T ss_dssp SCCEEEEEGGGTSTTCCCEEEEECHHHHHHCHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHSS
T ss_pred CCeEEEEeccccCCCCceEEEEECHHHHHHCHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHhC
Confidence 4321222 2222222 2245666654 44 555666666667776643355556654
No 132
>3ctp_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens}
Probab=95.55 E-value=0.028 Score=58.41 Aligned_cols=150 Identities=13% Similarity=0.122 Sum_probs=92.8
Q ss_pred cceEEEEcCCChhhHHHHHHhccCCCccEEeeeCCCCCCCCCCCCCCeEEEecCChHHHHHHHHHHHhhcCceEEEEEEE
Q 003821 5 KEVKVIVGMETWGAATMVADIGSRAQVPVLSFAEPAIAPPLTSTRWPFLVRMANSSAEQITCTAALVGSYNWRKVIIIYE 84 (793)
Q Consensus 5 ~~V~aiiGp~~s~~~~~va~i~~~~~iP~Is~~~~~~~~~l~~~~~~~~~r~~p~~~~~~~ai~~ll~~~~w~~vaii~~ 84 (793)
.+|.+|| ....... +.+...++|+|..... .+. ..+ .+..++...+..++++|...|.++|++|..
T Consensus 115 ~~vdgiI-~~~~~~~----~~l~~~~iPvV~~~~~--~~~----~~~---~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~ 180 (330)
T 3ctp_A 115 HRVAGII-ASRSQCE----DEYANIDIPVVAFENH--ILD----NII---TISSDNYNGGRMAFDHLYEKGCRKILHIKG 180 (330)
T ss_dssp TTCSEEE-EETCCCS----GGGTTCCSCEEEESSC--CCT----TSC---EEEECHHHHHHHHHHHHHHTTCCSEEEEEC
T ss_pred CCCCEEE-ECCCCCH----HHHHhcCCCEEEEecc--CCC----CCC---EEEeCHHHHHHHHHHHHHHCCCCeEEEEeC
Confidence 5677777 3322111 3355789999988654 221 223 455677777788888888889999999987
Q ss_pred cCCCccccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhc-CCceEEEEeccChHHHHHHHHHHHHc
Q 003821 85 DDATNADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLR-TESRVFIILQSSLAMGIHLFREAKEM 163 (793)
Q Consensus 85 dd~~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~-~~~~vivvl~~~~~~~~~~l~~a~~~ 163 (793)
.........-.+.+.+.+++.|+++. ...+.... +. .+-...+.++.+ ..+++|+. ++...+..+++++++.
T Consensus 181 ~~~~~~~~~R~~Gf~~al~~~g~~~~-~~~~~~~~---~~-~~~~~~~~~ll~~~~~~ai~~--~~d~~A~g~~~al~~~ 253 (330)
T 3ctp_A 181 PEVFEATELRYKGFLDGARAKDLEID-FIEFQHDF---QV-KMLEEDINSMKDIVNYDGIFV--FNDIAAATVMRALKKR 253 (330)
T ss_dssp CTTCHHHHHHHHHHHHHHHHTTCCCE-EEECSSSC---CG-GGGGCCCTTGGGGGGSSEEEE--SSHHHHHHHHHHHHHT
T ss_pred CccCccHHHHHHHHHHHHHHcCCCcc-eeEEcCCC---CH-HHHHHHHHHHhcCCCCcEEEE--CCHHHHHHHHHHHHHc
Confidence 65421114557778899999998765 32222111 11 111122333333 35787665 5667788899999999
Q ss_pred CCCCCCeEEEEe
Q 003821 164 GLVGPDSVWVIA 175 (793)
Q Consensus 164 g~~~~~~~wi~~ 175 (793)
|+.-|+-+-+++
T Consensus 254 G~~vP~disvvg 265 (330)
T 3ctp_A 254 GVSIPQEVQIIG 265 (330)
T ss_dssp TCCTTTTCEEEC
T ss_pred CCCCCCCeEEEE
Confidence 997554344444
No 133
>3ix1_A N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine protein; periplasmic N-formyl-4-amino-5-aminomethyl-2-methylpyrimidin protein; HET: NFM; 2.40A {Bacillus halodurans c-125}
Probab=95.36 E-value=0.025 Score=57.88 Aligned_cols=64 Identities=9% Similarity=0.052 Sum_probs=42.9
Q ss_pred eeeeeeHHHHHHHHHHCCCccceeEE-------------EEeEEEec-EEEecccc---cceeecccccccceEEEEecC
Q 003821 375 IYDGYCIELFYKVLQVLKYDLPYEFS-------------DYDAAIGD-ITILVNRT---RFVEFSQPYTESGLSMVVPAK 437 (793)
Q Consensus 375 ~~~G~~~dll~~ia~~ln~~~~~~~~-------------~~Di~~~~-~~~t~~R~---~~~dfs~p~~~~~~~~~v~~~ 437 (793)
.+.|+.+.+-+-+.++.|+++++... ++|+++++ ......|. ....+..++...+..+++++.
T Consensus 16 ~~~~~~va~~~g~~~~~Gl~v~~~~~~~~~~~~~~l~~G~~D~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~ 95 (302)
T 3ix1_A 16 VHTFLYVAIENGYFAEEGLDVDIVFPTNPTDPIQLTASGAIPLALSYQPDVILARSKDLPVVSVASVVRSPLNHVMFLAE 95 (302)
T ss_dssp GGHHHHHHHHTTHHHHTTEEEEEECCSSTTHHHHHHHHTSCSEEEECHHHHHHHHHTTCCEEEEEEEECSCCEEEEEEGG
T ss_pred ccHHHHHHHHcChHHHcCCcEEEecCCCCchHHHHHHCCCCCEEecCHHHHHHHHHCCCCEEEEEEEeccCCEEEEEECC
Confidence 56788888888888889988444322 99999876 22233333 355566666667778888765
Q ss_pred C
Q 003821 438 A 438 (793)
Q Consensus 438 ~ 438 (793)
.
T Consensus 96 s 96 (302)
T 3ix1_A 96 Q 96 (302)
T ss_dssp G
T ss_pred C
Confidence 4
No 134
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=95.25 E-value=0.13 Score=52.23 Aligned_cols=142 Identities=11% Similarity=0.086 Sum_probs=87.0
Q ss_pred ccceEEEEcCCChhhHHHHHHhccCCCccEEeeeCCCCCCCCC------CCCCCeEEEecCChHHHHHHHHHHHhhc--C
Q 003821 4 EKEVKVIVGMETWGAATMVADIGSRAQVPVLSFAEPAIAPPLT------STRWPFLVRMANSSAEQITCTAALVGSY--N 75 (793)
Q Consensus 4 ~~~V~aiiGp~~s~~~~~va~i~~~~~iP~Is~~~~~~~~~l~------~~~~~~~~r~~p~~~~~~~ai~~ll~~~--~ 75 (793)
+++|.+||...+ .....+... ..++|+|..+.. .+... ......+..+. +..-+...++++... |
T Consensus 60 ~~~vDgII~~~~-~~~~~~~~~--~~~iPvV~~~~~--~~~~~~~v~~~~~~~~~~~gv~--~~~~~~~~~~~l~~~~pg 132 (295)
T 3lft_A 60 ANGNDLVVGIAT-PAAQGLASA--TKDLPVIMAAIT--DPIGANLVKDLKKPGGNVTGVS--DHNPAQQQVELIKALTPN 132 (295)
T ss_dssp TSSCSEEEEESH-HHHHHHHHH--CSSSCEEEESCS--CTTTTTSCSCSSCCCSSEEEEE--ECCCHHHHHHHHHHHCTT
T ss_pred hcCCCEEEECCc-HHHHHHHHc--CCCCCEEEEecc--ChhhcCccccccCCCCcEEEEE--CCccHHHHHHHHHHhCCC
Confidence 467888876433 223333332 479999987654 33221 00111233332 222355666777776 8
Q ss_pred ceEEEEEEEcCC-CccccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcCCceEEEEeccChHHHH
Q 003821 76 WRKVIIIYEDDA-TNADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRTESRVFIILQSSLAMGI 154 (793)
Q Consensus 76 w~~vaii~~dd~-~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivvl~~~~~~~~ 154 (793)
-+++++|+.+.. .+ ....+.+++++++.|+++....... . .+..+.+.++.. .+++|+. ++...+.
T Consensus 133 ~~~I~~i~~~~~~~~--~~r~~g~~~al~~~gi~~~~~~~~~--~------~~~~~~~~~l~~-~~dai~~--~~D~~a~ 199 (295)
T 3lft_A 133 VKTIGALYSSSEDNS--KTQVEEFKAYAEKAGLTVETFAVPS--T------NEIASTVTVMTS-KVDAIWV--PIDNTIA 199 (295)
T ss_dssp CCEEEEEEETTCHHH--HHHHHHHHHHHHHTTCEEEEEEESS--G------GGHHHHHHHHTT-TCSEEEE--CSCHHHH
T ss_pred CcEEEEEeCCCCcch--HHHHHHHHHHHHHcCCEEEEEecCC--H------HHHHHHHHHHHh-cCCEEEE--CCchhHH
Confidence 999999998865 23 5567889999999999876543221 1 346667777763 7888776 4445566
Q ss_pred HHHHHHHHcCC
Q 003821 155 HLFREAKEMGL 165 (793)
Q Consensus 155 ~~l~~a~~~g~ 165 (793)
..++++.+.+.
T Consensus 200 g~~~~l~~~~~ 210 (295)
T 3lft_A 200 SGFPTVVSSNQ 210 (295)
T ss_dssp HTHHHHHHHTT
T ss_pred HHHHHHHHHHH
Confidence 66777877775
No 135
>3ksx_A Nitrate transport protein; SSUA, alkanesulfonate-binding protein, periplasmic-binding P transport protein; HET: MPO; 1.70A {Xanthomonas axonopodis PV} PDB: 3e4r_A* 3ksj_A*
Probab=95.22 E-value=0.079 Score=54.77 Aligned_cols=70 Identities=16% Similarity=0.118 Sum_probs=47.2
Q ss_pred CCCChHHhhhCCCcccccCchHHHHHHHh---hcCCCCccccc-cCCHHHHHHHhhcCceEEEEechhhHHHHHhc
Q 003821 545 NVTDIGWLKASNLNVGFDGDSFVRNYLEN---VLGFKPENILK-VDHEYKYITDFESNRIAAAFLELSYERAFLSQ 616 (793)
Q Consensus 545 ~i~sl~dL~~~~~~~g~~~~~~~~~~l~~---~~~~~~~~~~~-~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~ 616 (793)
+|++++||+ |.++++..++.....+.. ..+.....+.. ..+..+...+|.+|++|+++...++......+
T Consensus 122 ~I~s~~DLk--Gk~i~v~~gs~~~~~~~~~l~~~Gl~~~~v~~v~~~~~~~~~al~~G~vDa~~~~~p~~~~~~~~ 195 (324)
T 3ksx_A 122 ALRTVADLK--GKRIAFQKGSSAHNLLLRVLAKSGLSMRDITPLYLSPANARAAFAAGQVDAWAIWDPWYSALTLD 195 (324)
T ss_dssp SCCSGGGGT--TCEEEECTTSHHHHHHHHHHHHTTCCGGGSEEEECCHHHHHHHHHTTCCSEEEEETTHHHHHHHT
T ss_pred CCCCHHHhC--CCEEEecCCChHHHHHHHHHHHcCCCHHHeEEEeCCHHHHHHHHHcCCCCEEEEccHHHHHHHhc
Confidence 589999998 899998766644333222 22333222322 22678899999999999998887777665544
No 136
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=95.15 E-value=0.21 Score=53.62 Aligned_cols=160 Identities=9% Similarity=0.049 Sum_probs=98.9
Q ss_pred ccceEEEEcCCChhhHHHHHHhccCCCccEEeeeCCCCCCCCCCCCCCeEEEecCChHHHHHHHHHHHhhcCceEEEEEE
Q 003821 4 EKEVKVIVGMETWGAATMVADIGSRAQVPVLSFAEPAIAPPLTSTRWPFLVRMANSSAEQITCTAALVGSYNWRKVIIIY 83 (793)
Q Consensus 4 ~~~V~aiiGp~~s~~~~~va~i~~~~~iP~Is~~~~~~~~~l~~~~~~~~~r~~p~~~~~~~ai~~ll~~~~w~~vaii~ 83 (793)
+.+|.|||-.. ....+...+...++|+|..... .+... ..+.+-.+..++..-+..+++.+...|-+++++|.
T Consensus 74 ~~~vDGiIi~~---~~~~~~~~l~~~~iPvV~i~~~--~~~~~--~~~~~~~V~~D~~~~g~~a~~~L~~~G~r~I~~i~ 146 (412)
T 4fe7_A 74 DWLGDGVIADF---DDKQIEQALADVDVPIVGVGGS--YHLAE--SYPPVHYIATDNYALVESAFLHLKEKGVNRFAFYG 146 (412)
T ss_dssp -CCCSEEEEET---TCHHHHHHHTTCCSCEEEEEEC--CSSGG--GSCSSEEEEECHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred cCCCCEEEEec---CChHHHHHHhhCCCCEEEecCC--ccccc--cCCCCCEEEeCHHHHHHHHHHHHHHcCCceEEEec
Confidence 45677776422 2234456677889999988765 22210 11223356777888888888999889999999998
Q ss_pred EcCCCcc--ccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhc--CCceEEEEeccChHHHHHHHHH
Q 003821 84 EDDATNA--DTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLR--TESRVFIILQSSLAMGIHLFRE 159 (793)
Q Consensus 84 ~dd~~G~--~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~vivvl~~~~~~~~~~l~~ 159 (793)
....... ...-.+.+.+++++.|+..... ..... ..+........+.++.+ ..+++|+. ++...+..+++.
T Consensus 147 ~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~--~~~~~-~~~~~~~~~~~~~~~l~~~~~~~aI~~--~nD~~A~g~~~a 221 (412)
T 4fe7_A 147 LPESSGKRWATEREYAFRQLVAEEKYRGVVY--QGLET-APENWQHAQNRLADWLQTLPPQTGIIA--VTDARARHILQV 221 (412)
T ss_dssp CCTTSCCHHHHHHHHHHHHHHTTSSSCCEEE--CCSCS-SCSSHHHHHHHHHHHHHHSCTTEEEEE--SSHHHHHHHHHH
T ss_pred ccccccccHHHHHHHHHHHHHHHcCCCcccc--ccccc-cccchhhHHHHHHHHHHhCCCCeEEEE--EecHHHHHHHHH
Confidence 7654310 1456778889999999864322 11111 01112233344444332 35787665 777888899999
Q ss_pred HHHcCCCCCCeEEEEe
Q 003821 160 AKEMGLVGPDSVWVIA 175 (793)
Q Consensus 160 a~~~g~~~~~~~wi~~ 175 (793)
+++.|+.-++-+-+++
T Consensus 222 l~~~G~~vP~disvig 237 (412)
T 4fe7_A 222 CEHLHIPVPEKLCVIG 237 (412)
T ss_dssp HHHHTCCTTTTSEEEE
T ss_pred HHHcCCCCCceEEEEe
Confidence 9999997554444444
No 137
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=95.10 E-value=0.34 Score=48.36 Aligned_cols=147 Identities=12% Similarity=0.120 Sum_probs=88.0
Q ss_pred ccceEEEE-cCCChhhHHHHHHhccCCCccEEeeeCCCCCCCCCCCCCCeEEEecCChHHHHHHHHHHHhhc--CceEEE
Q 003821 4 EKEVKVIV-GMETWGAATMVADIGSRAQVPVLSFAEPAIAPPLTSTRWPFLVRMANSSAEQITCTAALVGSY--NWRKVI 80 (793)
Q Consensus 4 ~~~V~aii-Gp~~s~~~~~va~i~~~~~iP~Is~~~~~~~~~l~~~~~~~~~r~~p~~~~~~~ai~~ll~~~--~w~~va 80 (793)
+.+|.+|| .|............+...++|+|..... .+. .. ..-.+..++..-++..+++|... |-++++
T Consensus 55 ~~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~i~~~--~~~---~~--~~~~V~~D~~~~g~~a~~~L~~~g~g~~~I~ 127 (271)
T 2dri_A 55 VRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQ--ATK---GE--VVSHIASDNVLGGKIAGDYIAKKAGEGAKVI 127 (271)
T ss_dssp TTTEEEEEECCSSTTTTHHHHHHHHHTTCCEEEESSC--CSS---SC--CSEEEEECHHHHHHHHHHHHHHHHCTTCEEE
T ss_pred HcCCCEEEEeCCChHHHHHHHHHHHHCCCcEEEecCC--CCC---Cc--eeEEEecChHHHHHHHHHHHHHHcCCCCeEE
Confidence 45687765 3433332223334455679999987654 221 11 11235567777777778877665 568999
Q ss_pred EEEEcCCCccccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhc--CCceEEEEeccChHHHHHHHH
Q 003821 81 IIYEDDATNADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLR--TESRVFIILQSSLAMGIHLFR 158 (793)
Q Consensus 81 ii~~dd~~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~vivvl~~~~~~~~~~l~ 158 (793)
+|...........-.+.+.+++++.|+++.... ....+ ...-.+.+.++.+ ..+++|+. .+...+..+++
T Consensus 128 ~i~g~~~~~~~~~R~~Gf~~al~~~g~~~~~~~-~~~~~-----~~~~~~~~~~ll~~~~~~~ai~~--~nD~~A~g~~~ 199 (271)
T 2dri_A 128 ELQGIAGTSAARERGEGFQQAVAAHKFNVLASQ-PADFD-----RIKGLNVMQNLLTAHPDVQAVFA--QNDEMALGALR 199 (271)
T ss_dssp EEECCTTCHHHHHHHHHHHHHHHHHTCEEEEEE-ECTTC-----HHHHHHHHHHHHHHCTTCCEEEE--SSHHHHHHHHH
T ss_pred EEECCCCCccHhHHHHHHHHHHhcCCCEEEEec-CCCCC-----HHHHHHHHHHHHHhCCCccEEEE--CCCcHHHHHHH
Confidence 998654321113456678889999998764321 11111 1223344444433 24677554 77778899999
Q ss_pred HHHHcCC
Q 003821 159 EAKEMGL 165 (793)
Q Consensus 159 ~a~~~g~ 165 (793)
++++.|+
T Consensus 200 al~~~g~ 206 (271)
T 2dri_A 200 ALQTAGK 206 (271)
T ss_dssp HHHHHTC
T ss_pred HHHHcCC
Confidence 9999998
No 138
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=95.09 E-value=0.34 Score=49.50 Aligned_cols=148 Identities=10% Similarity=-0.047 Sum_probs=93.2
Q ss_pred cceEEEE-cCCChhhHHHHHHhccCCCccEEeeeCCCCCCCCCCCCCCeEEEecCChHHHHHHHHHHHh-hcCceEEEEE
Q 003821 5 KEVKVIV-GMETWGAATMVADIGSRAQVPVLSFAEPAIAPPLTSTRWPFLVRMANSSAEQITCTAALVG-SYNWRKVIII 82 (793)
Q Consensus 5 ~~V~aii-Gp~~s~~~~~va~i~~~~~iP~Is~~~~~~~~~l~~~~~~~~~r~~p~~~~~~~ai~~ll~-~~~w~~vaii 82 (793)
.+|.+|| .|............+...+||+|..... .+. ... ...+..++...++.++++|. ..|-+++++|
T Consensus 57 ~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~~--~~~---~~~--~~~V~~D~~~~g~~a~~~L~~~~G~~~i~~i 129 (313)
T 3m9w_A 57 RGVDVLVIIPYNGQVLSNVVKEAKQEGIKVLAYDRM--IND---ADI--DFYISFDNEKVGELQAKALVDIVPQGNYFLM 129 (313)
T ss_dssp TTCSEEEEECSSTTSCHHHHHHHHTTTCEEEEESSC--CTT---SCC--SEEEEECHHHHHHHHHHHHHHHCSSEEEEEE
T ss_pred cCCCEEEEeCCChhhhHHHHHHHHHCCCeEEEECCc--CCC---CCc--eEEEecCHHHHHHHHHHHHHHhCCCCcEEEE
Confidence 4566665 3444443345556677889999998765 222 122 12456777778888888887 8999999999
Q ss_pred EEcCCCccccccHHHHHHHHHhc----CceeeEEeecCCCCCCCCChHHHHHHHHHhhc---CCceEEEEeccChHHHHH
Q 003821 83 YEDDATNADTGNLALLSEALQIS----NSEIEYRLVLPPISYLTDPKQFLQEKLLKLLR---TESRVFIILQSSLAMGIH 155 (793)
Q Consensus 83 ~~dd~~G~~~~~~~~l~~~l~~~----g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~---~~~~vivvl~~~~~~~~~ 155 (793)
...........-.+.+.+.+++. ++++......... ........+.++.+ ..+++|+. .+...+..
T Consensus 130 ~g~~~~~~~~~R~~Gf~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~ai~~--~~d~~a~g 202 (313)
T 3m9w_A 130 GGSPVDNNAKLFRAGQMKVLKPYVDSGKIKVVGDQWVDGW-----LPENALKIMENALTANNNKIDAVVA--SNDATAGG 202 (313)
T ss_dssp ESCTTCHHHHHHHHHHHHHHHHHHHTTSEEEEEEEECGGG-----CHHHHHHHHHHHHHHTTTCCCEEEE--SSHHHHHH
T ss_pred ECCCCCccHHHHHHHHHHHHHhhccCCCEEEEeeccCCCc-----CHHHHHHHHHHHHHhCCCCeeEEEE--CCCchHHH
Confidence 86544221144567788888877 5665443221111 12333444555433 35677555 67778889
Q ss_pred HHHHHHHcCCC
Q 003821 156 LFREAKEMGLV 166 (793)
Q Consensus 156 ~l~~a~~~g~~ 166 (793)
+++++++.|+.
T Consensus 203 ~~~al~~~G~~ 213 (313)
T 3m9w_A 203 AIQALSAQGLS 213 (313)
T ss_dssp HHHHHHTTTCT
T ss_pred HHHHHHHcCCC
Confidence 99999999996
No 139
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=95.07 E-value=0.1 Score=53.30 Aligned_cols=152 Identities=11% Similarity=0.135 Sum_probs=95.0
Q ss_pred ccceEEEE-cCCChhhHHHHHHhccCCCccEEeeeCCCCCCCCCCCCCCeEEEecCChHHHHHHHHHHHhhcCceEEEEE
Q 003821 4 EKEVKVIV-GMETWGAATMVADIGSRAQVPVLSFAEPAIAPPLTSTRWPFLVRMANSSAEQITCTAALVGSYNWRKVIII 82 (793)
Q Consensus 4 ~~~V~aii-Gp~~s~~~~~va~i~~~~~iP~Is~~~~~~~~~l~~~~~~~~~r~~p~~~~~~~ai~~ll~~~~w~~vaii 82 (793)
+.+|.+|| -|.... . .....+...++|+|..... . .....+ .+..++..-+..++++|...|-++|++|
T Consensus 81 ~~~vdgiIi~~~~~~-~-~~~~~l~~~~iPvV~i~~~--~---~~~~~~---~V~~D~~~~g~~a~~~L~~~G~~~I~~i 150 (305)
T 3huu_A 81 SKSVDGFILLYSLKD-D-PIEHLLNEFKVPYLIVGKS--L---NYENII---HIDNDNIDAAYQLTQYLYHLGHRHILFL 150 (305)
T ss_dssp TTCCSEEEESSCBTT-C-HHHHHHHHTTCCEEEESCC--C---SSTTCC---EEECCHHHHHHHHHHHHHHTTCCSEEEE
T ss_pred hCCCCEEEEeCCcCC-c-HHHHHHHHcCCCEEEECCC--C---cccCCc---EEEeCHHHHHHHHHHHHHHCCCCeEEEE
Confidence 35677765 233222 1 3345566789999988765 2 122223 4677777788888899988899999999
Q ss_pred EEcCCCccccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHh-hc--CCceEEEEeccChHHHHHHHHH
Q 003821 83 YEDDATNADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKL-LR--TESRVFIILQSSLAMGIHLFRE 159 (793)
Q Consensus 83 ~~dd~~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l-~~--~~~~vivvl~~~~~~~~~~l~~ 159 (793)
...........-.+.+.+.+++.|+.+.. +..... .. -...+.++ .+ ..+++|+. ++...+..++++
T Consensus 151 ~~~~~~~~~~~R~~Gf~~~l~~~g~~~~~-~~~~~~------~~-~~~~~~~~~l~~~~~~~ai~~--~nd~~A~g~~~a 220 (305)
T 3huu_A 151 QESGHYAVTEDRSVGFKQYCDDVKISNDC-VVIKSM------ND-LRDFIKQYCIDASHMPSVIIT--SDVMLNMQLLNV 220 (305)
T ss_dssp EESSCBHHHHHHHHHHHHHHHHTTCCCCE-EEECSH------HH-HHHHC--------CCCSEEEE--SSHHHHHHHHHH
T ss_pred cCCcccchhHHHHHHHHHHHHHcCCCccc-EEecCc------HH-HHHHHHHhhhcCCCCCCEEEE--CChHHHHHHHHH
Confidence 88755321145577888999999987654 221111 12 33444445 33 35777665 777888899999
Q ss_pred HHHcCCCCCCeEEEEe
Q 003821 160 AKEMGLVGPDSVWVIA 175 (793)
Q Consensus 160 a~~~g~~~~~~~wi~~ 175 (793)
+++.|+.-|+-+-+++
T Consensus 221 l~~~g~~vP~di~vig 236 (305)
T 3huu_A 221 LYEYQLRIPEDIQTAT 236 (305)
T ss_dssp HHHTTCCTTTTCEEEE
T ss_pred HHHcCCCCCcceEEEE
Confidence 9999997553333333
No 140
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=95.03 E-value=0.24 Score=51.79 Aligned_cols=141 Identities=16% Similarity=0.168 Sum_probs=90.7
Q ss_pred HHHhccCCCccEEeeeCCCCCCCCCCCCCCeEEEecCChHHHHHHHHHHHhhcCceEEEEEEEcCCCcc-ccccHHHHHH
Q 003821 22 VADIGSRAQVPVLSFAEPAIAPPLTSTRWPFLVRMANSSAEQITCTAALVGSYNWRKVIIIYEDDATNA-DTGNLALLSE 100 (793)
Q Consensus 22 va~i~~~~~iP~Is~~~~~~~~~l~~~~~~~~~r~~p~~~~~~~ai~~ll~~~~w~~vaii~~dd~~G~-~~~~~~~l~~ 100 (793)
....+...++|+|..... +. . +....+..++..-+..++++|...|-+++++|........ ...-.+.+.+
T Consensus 141 ~~~~l~~~~iPvV~i~~~---~~--~---~~~~~V~~D~~~~~~~a~~~L~~~G~r~I~~i~~~~~~~~~~~~R~~Gf~~ 212 (355)
T 3e3m_A 141 TIRLLQRASIPIVEIWEK---PA--H---PIGHTVGFSNERAAYDMTNALLARGFRKIVFLGEKDDDWTRGAARRAGFKR 212 (355)
T ss_dssp HHHHHHHCCSCEEEESSC---CS--S---CSSEEEECCHHHHHHHHHHHHHHTTCCSEEEEEESSCTTSHHHHHHHHHHH
T ss_pred HHHHHHhCCCCEEEECCc---cC--C---CCCCEEEeChHHHHHHHHHHHHHCCCCeEEEEccCcccChhHHHHHHHHHH
Confidence 345566789999987533 11 1 1123567777778888889998889999999998654210 1456778889
Q ss_pred HHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhc--CCceEEEEeccChHHHHHHHHHHHHcCCCCCCeEEEEe
Q 003821 101 ALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLR--TESRVFIILQSSLAMGIHLFREAKEMGLVGPDSVWVIA 175 (793)
Q Consensus 101 ~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~vivvl~~~~~~~~~~l~~a~~~g~~~~~~~wi~~ 175 (793)
++++.|+.+.....+.... ...+.-...+.++.+ ..+++|+. ++...+..+++.+++.|+.-|+-+-+++
T Consensus 213 al~~~g~~~~~~~~~~~~~---~~~~~~~~~~~~ll~~~~~~~ai~~--~nD~~A~g~~~al~~~G~~vP~disvig 284 (355)
T 3e3m_A 213 AMREAGLNPDQEIRLGAPP---LSIEDGVAAAELILQEYPDTDCIFC--VSDMPAFGLLSRLKSIGVAVPEQVSVVG 284 (355)
T ss_dssp HHHHTTSCSCCEEEESCSS---CCHHHHHHHHHHHHHHCTTCCEEEE--SSHHHHHHHHHHHHHHTCCTTTTCEEEC
T ss_pred HHHHCCcCCCccEEEecCC---CCHHHHHHHHHHHHcCCCCCcEEEE--CChHHHHHHHHHHHHcCCCCCCceEEEE
Confidence 9999998765222222111 112333444455443 35787655 7778888999999999997554444444
No 141
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=94.97 E-value=0.091 Score=52.76 Aligned_cols=148 Identities=11% Similarity=0.075 Sum_probs=86.8
Q ss_pred cceEEEEcCCChhhHHHHHH-hccCCCccEEeeeCCCCCCCCCCCCCCeEEEecCChHHHHHHHHHHHhhcCceEEEEEE
Q 003821 5 KEVKVIVGMETWGAATMVAD-IGSRAQVPVLSFAEPAIAPPLTSTRWPFLVRMANSSAEQITCTAALVGSYNWRKVIIIY 83 (793)
Q Consensus 5 ~~V~aiiGp~~s~~~~~va~-i~~~~~iP~Is~~~~~~~~~l~~~~~~~~~r~~p~~~~~~~ai~~ll~~~~w~~vaii~ 83 (793)
.+|.+||-...+ ..... .+...++|+|..... .+.. . .+..++...++.+++++...|-++++++.
T Consensus 63 ~~~dgiIi~~~~---~~~~~~~l~~~~iPvV~~~~~--~~~~-----~---~V~~D~~~~g~~a~~~L~~~G~~~i~~i~ 129 (277)
T 3e61_A 63 HNCTGMISTAFN---ENIIENTLTDHHIPFVFIDRI--NNEH-----N---GISTNHFKGGQLQAEVVRKGKGKNVLIVH 129 (277)
T ss_dssp TTCSEEEECGGG---HHHHHHHHHHC-CCEEEGGGC--C-----------------HHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred CCCCEEEEecCC---hHHHHHHHHcCCCCEEEEecc--CCCC-----C---eEEechHHHHHHHHHHHHHCCCCeEEEEe
Confidence 467666642222 22234 566779999998765 2221 1 56777777888888999888999999998
Q ss_pred EcCCCccccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcCCceEEEEeccChHHHHHHHHHHHHc
Q 003821 84 EDDATNADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRTESRVFIILQSSLAMGIHLFREAKEM 163 (793)
Q Consensus 84 ~dd~~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivvl~~~~~~~~~~l~~a~~~ 163 (793)
...+......-.+.+.+.+++.|+++.. ......+ . .+....+.+ ...+++|+. .+...+..+++++++.
T Consensus 130 ~~~~~~~~~~R~~gf~~~l~~~~~~~~~-~~~~~~~----~-~~~~~~l~~--~~~~~ai~~--~~d~~a~g~~~al~~~ 199 (277)
T 3e61_A 130 ENLLIDAFHQRVQGIKYILDQQRIDYKM-LEATLLD----N-DKKFIDLIK--ELSIDSIIC--SNDLLAINVLGIVQRY 199 (277)
T ss_dssp SCTTSHHHHHHHHHHHHHHHC---CEEE-EEGGGGG----S-HHHHHHHHH--HHTCCEEEE--SSHHHHHHHHHHHHHT
T ss_pred CCCCCccHHHHHHHHHHHHHHcCCCccc-eecCCCC----H-HHHHHHhhc--CCCCCEEEE--CCcHHHHHHHHHHHHc
Confidence 7654221145677888999999987664 2222111 1 222222221 236787665 6777888899999999
Q ss_pred CCCCCCeEEEEe
Q 003821 164 GLVGPDSVWVIA 175 (793)
Q Consensus 164 g~~~~~~~wi~~ 175 (793)
|+.-|+-+-+++
T Consensus 200 g~~vP~di~vig 211 (277)
T 3e61_A 200 HFKVPAEIQIIG 211 (277)
T ss_dssp TCCTTTTCEEEC
T ss_pred CCCCCCceEEEe
Confidence 997554444544
No 142
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A
Probab=94.94 E-value=0.099 Score=41.43 Aligned_cols=52 Identities=12% Similarity=0.103 Sum_probs=46.6
Q ss_pred cchhHHHHHHHHHhhcc-cc-ccccchhhHHHHHHHHHHHHHHHHHHhhhheee
Q 003821 486 QIGTALWFTFSSLFFAH-RE-RIYSNLTRLVVVVWLFVVLILNSSYTASLSSML 537 (793)
Q Consensus 486 ~~~~~~~~~~~~l~~~~-~~-~~~s~s~R~l~~~w~~~~lil~~~Yta~L~s~L 537 (793)
++.+++|+++.++...| ++ .|.+..+|++...+.++++.+.+...+++.+.+
T Consensus 28 ~~~~a~yf~~~T~tTvGyGdi~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~l 81 (82)
T 3ldc_A 28 SWTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVAVERLLEFL 81 (82)
T ss_dssp CHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48899999999999988 66 479999999999999999999999999887754
No 143
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=94.92 E-value=0.083 Score=53.99 Aligned_cols=141 Identities=13% Similarity=0.106 Sum_probs=82.9
Q ss_pred ccceEEEEcCCChhhHHHHHHhccCCCccEEeeeCCCCCCCCC------CCCCCeEEEecCChHHHHHHHHHHHhhc--C
Q 003821 4 EKEVKVIVGMETWGAATMVADIGSRAQVPVLSFAEPAIAPPLT------STRWPFLVRMANSSAEQITCTAALVGSY--N 75 (793)
Q Consensus 4 ~~~V~aiiGp~~s~~~~~va~i~~~~~iP~Is~~~~~~~~~l~------~~~~~~~~r~~p~~~~~~~ai~~ll~~~--~ 75 (793)
+++|.+||..... ....+.. ...++|+|..... .+... ....+.+..+.-. ..+...++++... |
T Consensus 67 ~~~vDgII~~~~~-~~~~~~~--~~~~iPvV~~~~~--~~~~~~~v~~~~~~~~~~~gv~~~--~~~~~~~~~l~~~~Pg 139 (302)
T 2qh8_A 67 GENPDVLVGIATP-TAQALVS--ATKTIPIVFTAVT--DPVGAKLVKQLEQPGKNVTGLSDL--SPVEQHVELIKEILPN 139 (302)
T ss_dssp HTCCSEEEEESHH-HHHHHHH--HCSSSCEEEEEES--CTTTTTSCSCSSSCCSSEEEEECC--CCHHHHHHHHHHHSTT
T ss_pred hCCCCEEEECChH-HHHHHHh--cCCCcCEEEEecC--CHhhcCccccccCCCCCEEEEECC--cCHHHHHHHHHHhCCC
Confidence 4567788764332 2333333 2679999987754 33210 0111233333321 1245556777766 9
Q ss_pred ceEEEEEEEcCC-CccccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcCCceEEEEeccChHHHH
Q 003821 76 WRKVIIIYEDDA-TNADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRTESRVFIILQSSLAMGI 154 (793)
Q Consensus 76 w~~vaii~~dd~-~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivvl~~~~~~~~ 154 (793)
.+++++|+...+ .+ ....+.+++++++.|+++....... . ++..+.+.++.. .+++|+. ++...+.
T Consensus 140 ~~~I~~i~~~~~~~~--~~r~~g~~~al~~~gi~~~~~~~~~--~------~~~~~~~~~l~~-~~dai~~--~~D~~a~ 206 (302)
T 2qh8_A 140 VKSIGVVYNPGEANA--VSLMELLKLSAAKHGIKLVEATALK--S------ADVQSATQAIAE-KSDVIYA--LIDNTVA 206 (302)
T ss_dssp CCEEEEEECTTCHHH--HHHHHHHHHHHHHTTCEEEEEECSS--G------GGHHHHHHHHGG-GCSEEEE--CSCHHHH
T ss_pred CcEEEEEecCCCcch--HHHHHHHHHHHHHcCCEEEEEecCC--h------HHHHHHHHHHhc-cCCEEEE--CCcHhHH
Confidence 999999998754 34 5667889999999999876543221 1 346677777763 6888776 3434444
Q ss_pred HHHHHHHHcC
Q 003821 155 HLFREAKEMG 164 (793)
Q Consensus 155 ~~l~~a~~~g 164 (793)
..++.+.+.+
T Consensus 207 g~~~~l~~~~ 216 (302)
T 2qh8_A 207 SAIEGMIVAA 216 (302)
T ss_dssp TTHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 144
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=94.83 E-value=0.19 Score=52.13 Aligned_cols=147 Identities=11% Similarity=0.101 Sum_probs=93.4
Q ss_pred cceEEEEcCCChhhHHHHHHhccCCCccEEeeeCCCCCCCCCCCCCCeEEEecCChHHHHHHHHHHHhhcCceEEEEEEE
Q 003821 5 KEVKVIVGMETWGAATMVADIGSRAQVPVLSFAEPAIAPPLTSTRWPFLVRMANSSAEQITCTAALVGSYNWRKVIIIYE 84 (793)
Q Consensus 5 ~~V~aiiGp~~s~~~~~va~i~~~~~iP~Is~~~~~~~~~l~~~~~~~~~r~~p~~~~~~~ai~~ll~~~~w~~vaii~~ 84 (793)
.+|.+||-... ...+...++|+|..... .+. ...+ .+..++..-+..++++|...|-+++++|..
T Consensus 118 ~~vdGiIi~~~-------~~~~~~~~iPvV~~~~~--~~~---~~~~---~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~ 182 (333)
T 3jvd_A 118 IQAAGIIHVPV-------VGSIAPEGIPMVQLTRG--ELG---PGFP---RVLCDDEAGFFQLTESVLGGSGMNIAALVG 182 (333)
T ss_dssp HTCSEEEECCC-------TTCCC-CCSCEEEECC---------CCSC---EEEECHHHHHHHHHHHHCCSSSCEEEEEES
T ss_pred CCCCEEEEcch-------HHHHhhCCCCEEEECcc--CCC---CCCC---EEEEChHHHHHHHHHHHHHCCCCeEEEEeC
Confidence 45666653222 34456789999988765 221 2233 456777778888889998889999999988
Q ss_pred cCCCccccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcCC-ceEEEEeccChHHHHHHHHHHHHc
Q 003821 85 DDATNADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRTE-SRVFIILQSSLAMGIHLFREAKEM 163 (793)
Q Consensus 85 dd~~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~-~~vivvl~~~~~~~~~~l~~a~~~ 163 (793)
.........-.+.+.+++++.|+. ....+...+ .++-...+.++.+.. +++|+. ++...+..+++++++.
T Consensus 183 ~~~~~~~~~R~~Gf~~al~~~g~~--~~~~~~~~~-----~~~~~~~~~~ll~~~~~~ai~~--~nd~~A~g~~~al~~~ 253 (333)
T 3jvd_A 183 EESLSTTQERMRGISHAASIYGAE--VTFHFGHYS-----VESGEEMAQVVFNNGLPDALIV--ASPRLMAGVMRAFTRL 253 (333)
T ss_dssp CTTSHHHHHHHHHHHHHHHHTTCE--EEEEECCSS-----HHHHHHHHHHHHHTCCCSEEEE--CCHHHHHHHHHHHHHT
T ss_pred CCCCccHHHHHHHHHHHHHHCCCC--EEEecCCCC-----HHHHHHHHHHHhcCCCCcEEEE--CCHHHHHHHHHHHHHc
Confidence 754321255677888999999987 221212211 233445555554443 787665 6777888999999999
Q ss_pred CCCCCCeEEEEe
Q 003821 164 GLVGPDSVWVIA 175 (793)
Q Consensus 164 g~~~~~~~wi~~ 175 (793)
|+.-|+-+-+++
T Consensus 254 G~~vP~disvig 265 (333)
T 3jvd_A 254 NVRVPHDVVIGG 265 (333)
T ss_dssp TCCTTTTCEEEE
T ss_pred CCCCCCceEEEE
Confidence 997554343443
No 145
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=94.74 E-value=0.16 Score=50.83 Aligned_cols=153 Identities=12% Similarity=0.128 Sum_probs=93.1
Q ss_pred ccceEEEEcCCChhhHHHHHHhccCCCccEEeeeCCCCCCCCCCCCCCeEEEecCChHHHHHHHHHHHhhcCceEEEEEE
Q 003821 4 EKEVKVIVGMETWGAATMVADIGSRAQVPVLSFAEPAIAPPLTSTRWPFLVRMANSSAEQITCTAALVGSYNWRKVIIIY 83 (793)
Q Consensus 4 ~~~V~aiiGp~~s~~~~~va~i~~~~~iP~Is~~~~~~~~~l~~~~~~~~~r~~p~~~~~~~ai~~ll~~~~w~~vaii~ 83 (793)
+.+|.+||-..... ......+...++|+|..... .+ ....+ .+..++..-++.+++++...|-++++++.
T Consensus 61 ~~~vdgiIi~~~~~--~~~~~~l~~~~iPvV~i~~~--~~---~~~~~---~V~~D~~~~g~~a~~~L~~~G~~~I~~i~ 130 (276)
T 3jy6_A 61 SRGFDGLILQSFSN--PQTVQEILHQQMPVVSVDRE--MD---ACPWP---QVVTDNFEAAKAATTAFRQQGYQHVVVLT 130 (276)
T ss_dssp TTTCSEEEEESSCC--HHHHHHHHTTSSCEEEESCC--CT---TCSSC---EEECCHHHHHHHHHHHHHTTTCCEEEEEE
T ss_pred hCCCCEEEEecCCc--HHHHHHHHHCCCCEEEEecc--cC---CCCCC---EEEEChHHHHHHHHHHHHHcCCCeEEEEe
Confidence 34676665322222 44555667789999988765 22 12233 46678888888899999889999999999
Q ss_pred EcCC-CccccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhc-CCceEEEEeccChHHHHHHHHHHH
Q 003821 84 EDDA-TNADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLR-TESRVFIILQSSLAMGIHLFREAK 161 (793)
Q Consensus 84 ~dd~-~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~-~~~~vivvl~~~~~~~~~~l~~a~ 161 (793)
.... ......-.+.+.+++++.+. ..+.... .............+.. ..+++|+. ++...+..++++++
T Consensus 131 ~~~~~~~~~~~R~~gf~~~l~~~~~-----~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~~--~~d~~a~g~~~al~ 201 (276)
T 3jy6_A 131 SELELSRTRQERYRGILAAAQDVDV-----LEVSESS--YNHSEVHQRLTQLITQNDQKTVAFA--LKERWLLEFFPNLI 201 (276)
T ss_dssp ECSTTCHHHHHHHHHHHTTCSEEEE-----EEECSSS--CCHHHHHHHHHHHHHSSSSCEEEEE--SSHHHHHHHSHHHH
T ss_pred cCCCCCchHHHHHHHHHHHHHhCCc-----EEEeccc--cCCcHHHHHHHHHHhcCCCCcEEEE--eCcHHHHHHHHHHH
Confidence 8764 32113345556666666642 1222211 0111223333333433 35777654 77788889999999
Q ss_pred HcCCCCCCeEEEEe
Q 003821 162 EMGLVGPDSVWVIA 175 (793)
Q Consensus 162 ~~g~~~~~~~wi~~ 175 (793)
+.|+.-|+-+-+++
T Consensus 202 ~~g~~vP~di~vig 215 (276)
T 3jy6_A 202 ISGLIDNQTVTATG 215 (276)
T ss_dssp HSSSCCSSSEEEEE
T ss_pred HcCCCCCCcEEEEE
Confidence 99997655455555
No 146
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=94.63 E-value=0.14 Score=52.06 Aligned_cols=148 Identities=9% Similarity=-0.027 Sum_probs=90.8
Q ss_pred ccceEEEE-cCCChhhHHHHHHhccCCCccEEeeeCCCCCCCCCCCCCCeEEEecCChHHHHHHHHHHHhhcCc--eEEE
Q 003821 4 EKEVKVIV-GMETWGAATMVADIGSRAQVPVLSFAEPAIAPPLTSTRWPFLVRMANSSAEQITCTAALVGSYNW--RKVI 80 (793)
Q Consensus 4 ~~~V~aii-Gp~~s~~~~~va~i~~~~~iP~Is~~~~~~~~~l~~~~~~~~~r~~p~~~~~~~ai~~ll~~~~w--~~va 80 (793)
+.+|.+|| -|..+.........+...+||+|..... .+.. +.+-.+.+++...++.+++++...|- ++|+
T Consensus 67 ~~~vdgiii~~~~~~~~~~~~~~~~~~~iPvV~~~~~--~~~~-----~~~~~V~~D~~~~g~~a~~~l~~~g~~~~~i~ 139 (304)
T 3gbv_A 67 EEQPDGVMFAPTVPQYTKGFTDALNELGIPYIYIDSQ--IKDA-----PPLAFFGQNSHQSGYFAARMLMLLAVNDREIV 139 (304)
T ss_dssp TTCCSEEEECCSSGGGTHHHHHHHHHHTCCEEEESSC--CTTS-----CCSEEEECCHHHHHHHHHHHHHHHSTTCSEEE
T ss_pred hcCCCEEEECCCChHHHHHHHHHHHHCCCeEEEEeCC--CCCC-----CceEEEecChHHHHHHHHHHHHHHhCCCCeEE
Confidence 35677665 4444444444555666779999998765 2221 11235678888888889999988888 9999
Q ss_pred EEEEcC----CCccccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcC--CceEEEEeccChHHHH
Q 003821 81 IIYEDD----ATNADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRT--ESRVFIILQSSLAMGI 154 (793)
Q Consensus 81 ii~~dd----~~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~vivvl~~~~~~~~ 154 (793)
+|..+. .......-.+.+.+.+++.|..+.......... +. +.....+.++.+. .+++|+. .+.. +.
T Consensus 140 ~i~~~~~g~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~---~~-~~~~~~~~~~l~~~~~~~ai~~--~~d~-a~ 212 (304)
T 3gbv_A 140 IFRKIHEGVIGSNQQESREIGFRQYMQEHHPACNILELNLHAD---LN-IEDSRMLDDFFREHPDVKHGIT--FNSK-VY 212 (304)
T ss_dssp EEEEEBTTBCCCHHHHHHHHHHHHHHHHHCTTSEEEEEEEESS---CS-SCHHHHHHHHHHHCTTCCEEEE--SSSC-TH
T ss_pred EEEecccCCccchhHHHHHHHHHHHHHhhCCCcEEEEeeecCC---CH-HHHHHHHHHHHHhCCCeEEEEE--cCcc-hH
Confidence 998431 111114557778889999887544332211111 01 1123334443332 5787766 4444 77
Q ss_pred HHHHHHHHcCC
Q 003821 155 HLFREAKEMGL 165 (793)
Q Consensus 155 ~~l~~a~~~g~ 165 (793)
.+++++++.|+
T Consensus 213 g~~~al~~~g~ 223 (304)
T 3gbv_A 213 IIGEYLQQRRK 223 (304)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHcCC
Confidence 89999999999
No 147
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=94.62 E-value=0.081 Score=53.71 Aligned_cols=159 Identities=10% Similarity=0.078 Sum_probs=96.9
Q ss_pred ccceEEEEc-CCChh---hHHHHHHhccCCCccEEeeeCCCCCCCCCCCCCCeEEEecCChHHHHHHHHHHHhhcCceEE
Q 003821 4 EKEVKVIVG-METWG---AATMVADIGSRAQVPVLSFAEPAIAPPLTSTRWPFLVRMANSSAEQITCTAALVGSYNWRKV 79 (793)
Q Consensus 4 ~~~V~aiiG-p~~s~---~~~~va~i~~~~~iP~Is~~~~~~~~~l~~~~~~~~~r~~p~~~~~~~ai~~ll~~~~w~~v 79 (793)
+.+|.+||= |..+. ........+...++|+|..... .+. ...+ .+..++..-++.++++|...|-+++
T Consensus 69 ~~~vdgiIi~~~~~~~~~~~~~~~~~~~~~~iPvV~~~~~--~~~---~~~~---~V~~d~~~~~~~a~~~L~~~G~~~i 140 (298)
T 3tb6_A 69 SQHIDGLIVEPTKSALQTPNIGYYLNLEKNGIPFAMINAS--YAE---LAAP---SFTLDDVKGGMMAAEHLLSLGHTHM 140 (298)
T ss_dssp HTCCSEEEECCSSTTSCCTTHHHHHHHHHTTCCEEEESSC--CTT---CSSC---EEEECHHHHHHHHHHHHHHTTCCSE
T ss_pred HCCCCEEEEecccccccCCcHHHHHHHHhcCCCEEEEecC--cCC---CCCC---EEEeCcHHHHHHHHHHHHHCCCCcE
Confidence 346766653 33322 3344555666789999988765 222 1223 3667777888889999988899999
Q ss_pred EEEEEcCCCccccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcC--C--ceEEEEeccChHHHHH
Q 003821 80 IIIYEDDATNADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRT--E--SRVFIILQSSLAMGIH 155 (793)
Q Consensus 80 aii~~dd~~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~--~~vivvl~~~~~~~~~ 155 (793)
+++....... ...-.+.+.+.+++.|+++.....+..... +........+.++.+. . +++|+. .+...+..
T Consensus 141 ~~i~~~~~~~-~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~ai~~--~~d~~a~g 215 (298)
T 3tb6_A 141 MGIFKADDTQ-GVKRMNGFIQAHRERELFPSPDMIVTFTTE--EKESKLLEKVKATLEKNSKHMPTAILC--YNDEIALK 215 (298)
T ss_dssp EEEEESSSHH-HHHHHHHHHHHHHHTTCCCCGGGEEEECHH--HHTTHHHHHHHHHHHHTTTSCCSEEEC--SSHHHHHH
T ss_pred EEEcCCCCcc-HHHHHHHHHHHHHHcCCCCCcceEEEeccc--chhhhHHHHHHHHHhcCCCCCCeEEEE--eCcHHHHH
Confidence 9998765521 145577788999999876532211111110 0001113344444332 3 677554 67778889
Q ss_pred HHHHHHHcCCCCCCeEEEEe
Q 003821 156 LFREAKEMGLVGPDSVWVIA 175 (793)
Q Consensus 156 ~l~~a~~~g~~~~~~~wi~~ 175 (793)
+++++++.|+.-++-+-+++
T Consensus 216 ~~~al~~~g~~vP~di~vvg 235 (298)
T 3tb6_A 216 VIDMLREMDLKVPEDMSIVG 235 (298)
T ss_dssp HHHHHHHTTCCTTTTCEEEC
T ss_pred HHHHHHHcCCCCCCceEEEe
Confidence 99999999997554444444
No 148
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=94.59 E-value=0.18 Score=52.72 Aligned_cols=154 Identities=17% Similarity=0.106 Sum_probs=89.9
Q ss_pred cceEEEEcCCChhhHHHHHHhccCCCccEEeeeCCCCCCCCCCCCCCeEEEecCChHHHHHHHHHHHhhcCceEEEEEEE
Q 003821 5 KEVKVIVGMETWGAATMVADIGSRAQVPVLSFAEPAIAPPLTSTRWPFLVRMANSSAEQITCTAALVGSYNWRKVIIIYE 84 (793)
Q Consensus 5 ~~V~aiiGp~~s~~~~~va~i~~~~~iP~Is~~~~~~~~~l~~~~~~~~~r~~p~~~~~~~ai~~ll~~~~w~~vaii~~ 84 (793)
.+|.+||-....... .....+...++|+|..... .+. ....+ .+..++..-+..++++|...|-++|++|..
T Consensus 121 ~~vdgiI~~~~~~~~-~~~~~l~~~~iPvV~i~~~--~~~--~~~~~---~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~ 192 (348)
T 3bil_A 121 HGVDGIICVPNEECA-NQLEDLQKQGMPVVLVDRE--LPG--DSTIP---TATSNPQPGIAAAVELLAHNNALPIGYLSG 192 (348)
T ss_dssp TTCSCEEECCCGGGH-HHHHHHHHC-CCEEEESSC--CSC--C-CCC---EEEEECHHHHHHHHHHHHHTTCCSEEEECC
T ss_pred CCCCEEEEeCCCCCh-HHHHHHHhCCCCEEEEccc--CCC--CCCCC---EEEeChHHHHHHHHHHHHHCCCCeEEEEeC
Confidence 467766643322222 2333445679999988654 221 01223 355666677788888888889999999987
Q ss_pred cCCCccccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcCC-ceEEEEeccChHHHHHHHHHHHHc
Q 003821 85 DDATNADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRTE-SRVFIILQSSLAMGIHLFREAKEM 163 (793)
Q Consensus 85 dd~~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~-~~vivvl~~~~~~~~~~l~~a~~~ 163 (793)
.........-.+.+.+.+++.|+..... +.... ...+-...+.++.+.. + +|+ +++...+..+++++++.
T Consensus 193 ~~~~~~~~~R~~Gf~~al~~~g~~~~~v--~~~~~----~~~~~~~~~~~ll~~~~~-ai~--~~nD~~A~g~~~al~~~ 263 (348)
T 3bil_A 193 PMDTSTGRERLEDFKAACANSKIGEQLV--FLGGY----EQSVGFEGATKLLDQGAK-TLF--AGDSMMTIGVIEACHKA 263 (348)
T ss_dssp CTTSHHHHHHHHHHHHHHHHTTCCCCEE--ECCCS----SHHHHHHHHHHHHHTTCS-EEE--ESSHHHHHHHHHHHHHT
T ss_pred CCCCccHHHHHHHHHHHHHHcCcCccEE--EcCCC----CHHHHHHHHHHHHcCCCC-EEE--EcChHHHHHHHHHHHHc
Confidence 6432111445677888999998732211 11111 1233344555554443 5 433 46677788999999999
Q ss_pred CCCCCCeEEEEe
Q 003821 164 GLVGPDSVWVIA 175 (793)
Q Consensus 164 g~~~~~~~wi~~ 175 (793)
|+.-|+-+-+++
T Consensus 264 G~~vP~disvvG 275 (348)
T 3bil_A 264 GLVIGKDVSVIG 275 (348)
T ss_dssp TCCBTTTBEEEE
T ss_pred CCCCCCCeEEEE
Confidence 996543333443
No 149
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*
Probab=94.45 E-value=0.15 Score=53.12 Aligned_cols=152 Identities=10% Similarity=0.013 Sum_probs=89.3
Q ss_pred cceEEEEcCCChhhHHHHHHhccCCCccEEeeeCCCCCCCCCCCCCCeEEEecCChHHHHHHHHHHHhh-cC-ceEEEEE
Q 003821 5 KEVKVIVGMETWGAATMVADIGSRAQVPVLSFAEPAIAPPLTSTRWPFLVRMANSSAEQITCTAALVGS-YN-WRKVIII 82 (793)
Q Consensus 5 ~~V~aiiGp~~s~~~~~va~i~~~~~iP~Is~~~~~~~~~l~~~~~~~~~r~~p~~~~~~~ai~~ll~~-~~-w~~vaii 82 (793)
.+|.+||-+............+...++|+|...... .|.......+.+..+.+++..-+..+++++.. .| -++|++|
T Consensus 103 ~~vdgiIi~~~~~~~~~~~~~~~~~~ip~V~~~~~~-~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~~Gg~~~I~~i 181 (342)
T 1jx6_A 103 SKSDYLIFTLDTTRHRKFVEHVLDSTNTKLILQNIT-TPVREWDKHQPFLYVGFDHAEGSRELATEFGKFFPKHTYYSVL 181 (342)
T ss_dssp TTCSEEEECCSSSTTHHHHHHHHHHCSCEEEEETCC-SCBGGGTTSCCSEEEECCHHHHHHHHHHHHHHHSCTTCEEEEE
T ss_pred cCCCEEEEeCChHhHHHHHHHHHHcCCCEEEEecCC-CcccccccCCCceEEecCcHHHHHHHHHHHHHHcCCCceEEEE
Confidence 467777765444322233334455689998773330 12110001122335677887888888888876 47 9999999
Q ss_pred EEcCCCccccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcC--CceEEEEeccChHHHHHHHHHH
Q 003821 83 YEDDATNADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRT--ESRVFIILQSSLAMGIHLFREA 160 (793)
Q Consensus 83 ~~dd~~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~vivvl~~~~~~~~~~l~~a 160 (793)
....... ...-.+.+.+.+++.|. +.....+.... ....-...+.++.+. .+++|+. .+...+..+++++
T Consensus 182 ~~~~~~~-~~~R~~Gf~~~l~~~~~-~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~ai~~--~nd~~A~g~~~al 253 (342)
T 1jx6_A 182 YFSEGYI-SDVRGDTFIHQVNRDNN-FELQSAYYTKA----TKQSGYDAAKASLAKHPDVDFIYA--CSTDVALGAVDAL 253 (342)
T ss_dssp CCSTTHH-HHHHHHHHHHHHHHHHC-CEEEEEECCCS----SHHHHHHHHHHHHHHCCCCSEEEE--SSHHHHHHHHHHH
T ss_pred EcCCcch-hhHHHHHHHHHHHhCCC-cEEEEEecCCC----CHHHHHHHHHHHHHhCCCccEEEE--CCChhHHHHHHHH
Confidence 8664421 14556778888988886 22221222111 123334445554433 4677655 6677788899999
Q ss_pred HHcCC
Q 003821 161 KEMGL 165 (793)
Q Consensus 161 ~~~g~ 165 (793)
++.|+
T Consensus 254 ~~~g~ 258 (342)
T 1jx6_A 254 AELGR 258 (342)
T ss_dssp HHHTC
T ss_pred HHcCC
Confidence 99998
No 150
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=94.44 E-value=0.15 Score=53.19 Aligned_cols=139 Identities=14% Similarity=0.067 Sum_probs=90.4
Q ss_pred HHHHhccCCCccEEeeeCCCCCCCCCCCCCCeEEEecCChHHHHHHHHHHHhhcCceEEEEEEEcC--C-CccccccHHH
Q 003821 21 MVADIGSRAQVPVLSFAEPAIAPPLTSTRWPFLVRMANSSAEQITCTAALVGSYNWRKVIIIYEDD--A-TNADTGNLAL 97 (793)
Q Consensus 21 ~va~i~~~~~iP~Is~~~~~~~~~l~~~~~~~~~r~~p~~~~~~~ai~~ll~~~~w~~vaii~~dd--~-~G~~~~~~~~ 97 (793)
.....+...++|+|..... .. . +....+..++..-+..++++|...|-+++++|.... + .. ..-.+.
T Consensus 138 ~~~~~l~~~~iPvV~i~~~--~~---~---~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~--~~R~~G 207 (344)
T 3kjx_A 138 AARAMLDAAGIPVVEIMDS--DG---K---PVDAMVGISHRRAGREMAQAILKAGYRRIGFMGTKMPLDYRA--RKRFEG 207 (344)
T ss_dssp HHHHHHHHCSSCEEEEEEC--SS---C---CSSEEEEECHHHHHHHHHHHHHHHTCCSCCEEESSTTTCHHH--HHHHHH
T ss_pred HHHHHHHhCCCCEEEEeCC--CC---C---CCCCEEEECcHHHHHHHHHHHHHCCCCeEEEEecCcccCccH--HHHHHH
Confidence 3445566789999988533 11 1 112246677777888888888888999999998764 2 22 455678
Q ss_pred HHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcC--CceEEEEeccChHHHHHHHHHHHHcCCCCCCeEEEEe
Q 003821 98 LSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRT--ESRVFIILQSSLAMGIHLFREAKEMGLVGPDSVWVIA 175 (793)
Q Consensus 98 l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~vivvl~~~~~~~~~~l~~a~~~g~~~~~~~wi~~ 175 (793)
+.+++++.|+.+.....+.... ..+.-...+.++.+. .+++|+. ++...+..+++++++.|+.-|+-+-+++
T Consensus 208 f~~al~~~g~~~~~~~~~~~~~----~~~~~~~~~~~ll~~~~~~~ai~~--~nd~~A~g~~~al~~~g~~vP~disvvg 281 (344)
T 3kjx_A 208 FTEVLGKNGVEIEDREFYSGGS----ALAKGREMTQAMLERSPDLDFLYY--SNDMIAAGGLLYLLEQGIDIPGQIGLAG 281 (344)
T ss_dssp HHHHHHHTTCCCSCEEECSSCC----CHHHHHHHHHHHHHHSTTCCEEEE--SSHHHHHHHHHHHHHTTCCTTTTCEEEC
T ss_pred HHHHHHHcCCCCChheEEeCCC----CHHHHHHHHHHHHhcCCCCCEEEE--CCHHHHHHHHHHHHHcCCCCCCceEEEE
Confidence 8899999998765433332111 122333444444332 5777665 6778888999999999997654444444
No 151
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Probab=94.36 E-value=0.069 Score=43.91 Aligned_cols=56 Identities=13% Similarity=0.269 Sum_probs=49.8
Q ss_pred cchhHHHHHHHHHhhcc-cc-ccccchhhHHHHHHHHHHHHHHHHHHhhhheeeeecc
Q 003821 486 QIGTALWFTFSSLFFAH-RE-RIYSNLTRLVVVVWLFVVLILNSSYTASLSSMLTVQR 541 (793)
Q Consensus 486 ~~~~~~~~~~~~l~~~~-~~-~~~s~s~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~ 541 (793)
++.+++|+++.++...| ++ .|.+..+|++...|.++++.+.+...+.+++.++.+.
T Consensus 32 ~~~~a~yf~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~i~~i~~~~~~~~ 89 (97)
T 3ouf_A 32 RPIDALYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPS 89 (97)
T ss_dssp CHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred CHHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 48899999999999988 66 5799999999999999999999999999998876544
No 152
>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1
Probab=94.36 E-value=0.37 Score=47.48 Aligned_cols=119 Identities=9% Similarity=0.014 Sum_probs=80.2
Q ss_pred ccCCCccEEeeeCCCCCCCCCCCCCCeEEEecCChHHHHHHHHHHHhhcCceEEEEEEEc-CC--CccccccHHHHHHHH
Q 003821 26 GSRAQVPVLSFAEPAIAPPLTSTRWPFLVRMANSSAEQITCTAALVGSYNWRKVIIIYED-DA--TNADTGNLALLSEAL 102 (793)
Q Consensus 26 ~~~~~iP~Is~~~~~~~~~l~~~~~~~~~r~~p~~~~~~~ai~~ll~~~~w~~vaii~~d-d~--~G~~~~~~~~l~~~l 102 (793)
....++|+|..... . .. +-.+..++..-+..+++++...|.++|+++... .+ .. ..-.+.+.+++
T Consensus 75 l~~~~~pvV~~~~~--~-----~~---~~~V~~d~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~--~~R~~gf~~al 142 (255)
T 1byk_A 75 LAHWQSSLVLLARD--A-----KG---FASVCYDDEGAIKILMQRLYDQGHRNISYLGVPHSDVTTG--KRRHEAYLAFC 142 (255)
T ss_dssp SGGGSSSEEEESSC--C-----SS---CEEEEECHHHHHHHHHHHHHHTTCCCEEEECCCTTSTTTT--HHHHHHHHHHH
T ss_pred HHhcCCCEEEEccc--c-----CC---CCEEEEccHHHHHHHHHHHHHcCCCeEEEEecCCCCcccH--HHHHHHHHHHH
Confidence 44568999887543 2 11 235667777778888898888899999999865 22 23 45577788999
Q ss_pred HhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcCCceEEEEeccChHHHHHHHHHHHHcCC
Q 003821 103 QISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRTESRVFIILQSSLAMGIHLFREAKEMGL 165 (793)
Q Consensus 103 ~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivvl~~~~~~~~~~l~~a~~~g~ 165 (793)
++.|+.+.. +.... ...+-.+.+.++.+..+++|+. ++...+..+++++++.|+
T Consensus 143 ~~~g~~~~~---~~~~~----~~~~~~~~~~~~l~~~~~ai~~--~~d~~A~g~~~al~~~g~ 196 (255)
T 1byk_A 143 KAHKLHPVA---ALPGL----AMKQGYENVAKVITPETTALLC--ATDTLALGASKYLQEQRI 196 (255)
T ss_dssp HHTTCCCEE---ECCCS----CHHHHHHHSGGGCCTTCCEEEE--SSHHHHHHHHHHHHHTTC
T ss_pred HHcCCCcce---eecCC----ccchHHHHHHHHhcCCCCEEEE--eChHHHHHHHHHHHHcCC
Confidence 999986431 21111 1233344455555556887665 677788899999999998
No 153
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=94.27 E-value=0.36 Score=50.33 Aligned_cols=152 Identities=12% Similarity=0.042 Sum_probs=91.0
Q ss_pred cceEEEE--cCCChhhHHHHHHhccCCCccEEeeeCCCCCCCCCCCCCCeEEEecCChHHHHHHHHHHHhhcCceEEEEE
Q 003821 5 KEVKVIV--GMETWGAATMVADIGSRAQVPVLSFAEPAIAPPLTSTRWPFLVRMANSSAEQITCTAALVGSYNWRKVIII 82 (793)
Q Consensus 5 ~~V~aii--Gp~~s~~~~~va~i~~~~~iP~Is~~~~~~~~~l~~~~~~~~~r~~p~~~~~~~ai~~ll~~~~w~~vaii 82 (793)
.+|.+|| +|..... .....+...++|+|..... . ....+ .+..++..-+...+++|...|.++|++|
T Consensus 117 ~~vdGiIi~~~~~~~~--~~~~~~~~~~iPvV~i~~~--~----~~~~~---~V~~d~~~~~~~a~~~L~~~G~~~I~~i 185 (349)
T 1jye_A 117 QRVSGLIINYPLDDQD--AIAVEAACTNVPALFLDVS--D----QTPIN---SIIFSHEDGTRLGVEHLVALGHQQIALL 185 (349)
T ss_dssp TTCSCEEEESCCCHHH--HHHHHHHTTTSCEEESSSC--T----TSSSC---EEEECHHHHHHHHHHHHHHHTCCSEEEE
T ss_pred CCCCEEEEecCCCChh--HHHHHHhhCCCCEEEEccc--C----CCCCC---EEEEchHHHHHHHHHHHHHCCCCEEEEE
Confidence 4565554 4544432 2223344579999987543 1 11223 3556666667777888877899999999
Q ss_pred EEcCCCccccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcC--CceEEEEeccChHHHHHHHHHH
Q 003821 83 YEDDATNADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRT--ESRVFIILQSSLAMGIHLFREA 160 (793)
Q Consensus 83 ~~dd~~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~vivvl~~~~~~~~~~l~~a 160 (793)
...........-.+.+.+.+++.|+++.... ....+ ..+-...+.++.+. .+++|+. ++...+..+++++
T Consensus 186 ~g~~~~~~~~~R~~Gf~~al~~~gi~~~~~~-~~~~~-----~~~~~~~~~~ll~~~~~~~ai~~--~nD~~A~g~~~al 257 (349)
T 1jye_A 186 AGPLSSVSARLRLAGWHKYLTRNQIQPIAER-EGDWS-----AMSGFQQTMQMLNEGIVPTAMLV--ANDQMALGAMRAI 257 (349)
T ss_dssp ECCTTSHHHHHHHHHHHHHHHHTTCCCSEEE-ECCSS-----HHHHHHHHHHHHHTTCCCSEEEE--SSHHHHHHHHHHH
T ss_pred eCCCCCccHHHHHHHHHHHHHHcCCCccccc-cCCCC-----hHHHHHHHHHHHhCCCCCCEEEE--CChHHHHHHHHHH
Confidence 8764421114456778889999998654321 11111 12223344444333 4777665 6677788899999
Q ss_pred HHcCCCCCCeEEEEe
Q 003821 161 KEMGLVGPDSVWVIA 175 (793)
Q Consensus 161 ~~~g~~~~~~~wi~~ 175 (793)
++.|+.-|+-+-+++
T Consensus 258 ~~~G~~vP~disvvG 272 (349)
T 1jye_A 258 TESGLRVGADISVVG 272 (349)
T ss_dssp HHTTCCBTTTBEEEC
T ss_pred HHcCCCCCCcEEEEE
Confidence 999997554344444
No 154
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=94.06 E-value=0.38 Score=49.82 Aligned_cols=154 Identities=12% Similarity=0.077 Sum_probs=93.8
Q ss_pred cceEEEE-cCCChhhHHHHHHhccCCCccEEeeeCCCCCCCCCCCCCCeEEEecCChHHHHHHHHHHHhhcCceEEEEEE
Q 003821 5 KEVKVIV-GMETWGAATMVADIGSRAQVPVLSFAEPAIAPPLTSTRWPFLVRMANSSAEQITCTAALVGSYNWRKVIIIY 83 (793)
Q Consensus 5 ~~V~aii-Gp~~s~~~~~va~i~~~~~iP~Is~~~~~~~~~l~~~~~~~~~r~~p~~~~~~~ai~~ll~~~~w~~vaii~ 83 (793)
.+|.+|| -|..... .....+...++|+|..... .+ . +.. .+..++..-+..++++|...|-+++++|.
T Consensus 117 ~~vdGiIi~~~~~~~--~~~~~l~~~~iPvV~~~~~--~~---~---~~~-~V~~D~~~~~~~a~~~L~~~G~~~I~~i~ 185 (339)
T 3h5o_A 117 HRPDGVLITGLSHAE--PFERILSQHALPVVYMMDL--AD---D---GRC-CVGFSQEDAGAAITRHLLSRGKRRIGFLG 185 (339)
T ss_dssp TCCSEEEEECSCCCT--THHHHHHHTTCCEEEEESC--CS---S---SCC-EEECCHHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred CCCCEEEEeCCCCCH--HHHHHHhcCCCCEEEEeec--CC---C---CCe-EEEECHHHHHHHHHHHHHHCCCCeEEEEe
Confidence 4566654 2222211 3344566789999987543 11 1 112 56778888888888999888999999998
Q ss_pred EcCCCccccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcC--CceEEEEeccChHHHHHHHHHHH
Q 003821 84 EDDATNADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRT--ESRVFIILQSSLAMGIHLFREAK 161 (793)
Q Consensus 84 ~dd~~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~vivvl~~~~~~~~~~l~~a~ 161 (793)
...... ...-.+.+.+++++.|++......+.... .....-...+.++.+. .+++|+. ++...+..++++++
T Consensus 186 ~~~~~~-~~~R~~Gf~~al~~~g~~~~~~~~~~~~~---~~~~~~~~~~~~ll~~~~~~~ai~~--~nD~~A~g~~~al~ 259 (339)
T 3h5o_A 186 AQLDER-VMKRLDGYRAALDAADCRDAGLEWLDPQP---SSMQMGADMLDRALAERPDCDALFC--CNDDLAIGALARSQ 259 (339)
T ss_dssp ESCCHH-HHHHHHHHHHHHHHTTCCCGGGEEEECSC---CCHHHHHHHHHHHHHHCTTCCEEEE--SSHHHHHHHHHHHH
T ss_pred CCCCcc-HHHHHHHHHHHHHHCCCCCCChheEecCC---CCHHHHHHHHHHHHcCCCCCcEEEE--CChHHHHHHHHHHH
Confidence 775421 14456778889999987321111111111 1123334445554433 5777665 67788889999999
Q ss_pred HcCCCCCCeEEEEe
Q 003821 162 EMGLVGPDSVWVIA 175 (793)
Q Consensus 162 ~~g~~~~~~~wi~~ 175 (793)
+.|+.-|+-+-+++
T Consensus 260 ~~G~~vP~disvvg 273 (339)
T 3h5o_A 260 QLGIAVPERLAIAG 273 (339)
T ss_dssp HTTCCTTTTCEEEC
T ss_pred HcCCCCCCCEEEEE
Confidence 99997654444444
No 155
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=94.06 E-value=0.15 Score=43.41 Aligned_cols=54 Identities=13% Similarity=0.270 Sum_probs=48.3
Q ss_pred cchhHHHHHHHHHhhcc-cc-ccccchhhHHHHHHHHHHHHHHHHHHhhhheeeee
Q 003821 486 QIGTALWFTFSSLFFAH-RE-RIYSNLTRLVVVVWLFVVLILNSSYTASLSSMLTV 539 (793)
Q Consensus 486 ~~~~~~~~~~~~l~~~~-~~-~~~s~s~R~l~~~w~~~~lil~~~Yta~L~s~Lt~ 539 (793)
++.+++|+++.++...| ++ .|.+..+|++.++|.++++.+.....+.+.+.++.
T Consensus 49 ~~~~a~y~~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~~~~l~~~~~~ 104 (114)
T 2q67_A 49 RPIDALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQL 104 (114)
T ss_dssp CHHHHHHHHHHHHTSCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHhcceeCCCCccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48899999999999888 66 47899999999999999999999999999888744
No 156
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=93.98 E-value=0.2 Score=50.27 Aligned_cols=131 Identities=11% Similarity=0.108 Sum_probs=87.0
Q ss_pred hccCCCccEEeeeCCCCCCCCCCCCCCeEEEecCChHHHHHHHHHHHhhcCceEEEEEEEcCCCccccccHHHHHHHHHh
Q 003821 25 IGSRAQVPVLSFAEPAIAPPLTSTRWPFLVRMANSSAEQITCTAALVGSYNWRKVIIIYEDDATNADTGNLALLSEALQI 104 (793)
Q Consensus 25 i~~~~~iP~Is~~~~~~~~~l~~~~~~~~~r~~p~~~~~~~ai~~ll~~~~w~~vaii~~dd~~G~~~~~~~~l~~~l~~ 104 (793)
.+...++|+|..... + ... +-+ .+..++..-+..++++|. .|-++++++...........-.+.+.+.+++
T Consensus 80 ~~~~~~iPvV~~~~~--~--~~~---~~~-~V~~D~~~~g~~a~~~L~-~G~~~I~~i~~~~~~~~~~~R~~Gf~~~l~~ 150 (277)
T 3hs3_A 80 PNFHLNTPLVMYDSA--N--IND---DIV-RIVSNNTKGGKESIKLLS-KKIEKVLIQHWPLSLPTIRERIEAMTAEASK 150 (277)
T ss_dssp TTCCCSSCEEEESCC--C--CCS---SSE-EEEECHHHHHHHHHHTSC-TTCCEEEEEESCTTSHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCCEEEEccc--c--cCC---CCE-EEEEChHHHHHHHHHHHH-hCCCEEEEEeCCCcCccHHHHHHHHHHHHHH
Confidence 346678999987543 1 111 123 677888888888888888 9999999998764422124567788899999
Q ss_pred cCceeeEEeecCCCCCCCCChHHHHHHHHHhhc--CCceEEEEeccChHHHHHHHHHHHHcCCCCCCeEEEEe
Q 003821 105 SNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLR--TESRVFIILQSSLAMGIHLFREAKEMGLVGPDSVWVIA 175 (793)
Q Consensus 105 ~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~vivvl~~~~~~~~~~l~~a~~~g~~~~~~~wi~~ 175 (793)
.|+++... .+. .. . + .+.+.++.+ ..+++|+. .+...+..+++++++.|+.-|+-+-+++
T Consensus 151 ~g~~~~~~-~~~-~~----~-~--~~~~~~~l~~~~~~~ai~~--~~d~~A~g~~~al~~~g~~vP~di~vig 212 (277)
T 3hs3_A 151 LKIDYLLE-ETP-EN----N-P--YISAQSALNKSNQFDAIIT--VNDLYAAEIIKEAKRRNLKIPDDFQLVG 212 (277)
T ss_dssp TTCEEEEE-ECC-SS----C-H--HHHHHHHHHTGGGCSEEEC--SSHHHHHHHHHHHHHTTCCTTTTCEEEC
T ss_pred CCCCCCCC-Ccc-CC----c-h--HHHHHHHHcCCCCCCEEEE--CCHHHHHHHHHHHHHcCCCCCCceEEEe
Confidence 99987654 322 22 1 1 334444433 35777554 6777888999999999997554444444
No 157
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=93.33 E-value=1.1 Score=44.91 Aligned_cols=153 Identities=9% Similarity=-0.007 Sum_probs=88.7
Q ss_pred ccceEEEE-cCCChhhHHHHHHhccCCCccEEeeeCCCCCCCCC--CCCCCeEEEecCChHHHHHHHHHHHhhc-C--ce
Q 003821 4 EKEVKVIV-GMETWGAATMVADIGSRAQVPVLSFAEPAIAPPLT--STRWPFLVRMANSSAEQITCTAALVGSY-N--WR 77 (793)
Q Consensus 4 ~~~V~aii-Gp~~s~~~~~va~i~~~~~iP~Is~~~~~~~~~l~--~~~~~~~~r~~p~~~~~~~ai~~ll~~~-~--w~ 77 (793)
+.+|.+|| .|............+...++|+|..... .+... ....++.-.+..++..-++..+++|... | -+
T Consensus 57 ~~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~~--~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~~G~~~~ 134 (288)
T 1gud_A 57 NKNYKGIAFAPLSSVNLVMPVARAWKKGIYLVNLDEK--IDMDNLKKAGGNVEAFVTTDNVAVGAKGASFIIDKLGAEGG 134 (288)
T ss_dssp TSSEEEEEECCSSSSTTHHHHHHHHHTTCEEEEESSC--CCHHHHHHTTCCCSEEEECCHHHHHHHHHHHHHHHHGGGCE
T ss_pred HcCCCEEEEeCCChHHHHHHHHHHHHCCCeEEEECCC--CCcccccccCCceeEEECCChHHHHHHHHHHHHHHhCCCCC
Confidence 35687765 3433322222233344579999987654 21100 0000110246677777777888888666 8 89
Q ss_pred EEEEEEEcCCCccccccHHHHHHHHHhc-CceeeEEeecCCCCCCCCChHHHHHHHHHhhcC--CceEEEEeccChHHHH
Q 003821 78 KVIIIYEDDATNADTGNLALLSEALQIS-NSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRT--ESRVFIILQSSLAMGI 154 (793)
Q Consensus 78 ~vaii~~dd~~G~~~~~~~~l~~~l~~~-g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~vivvl~~~~~~~~ 154 (793)
+|++|...........-.+.+++++++. |+++.... .... ..+.-.+.+.++.+. .+++|+. .+...+.
T Consensus 135 ~I~~i~g~~~~~~~~~R~~Gf~~al~~~~g~~~~~~~-~~~~-----~~~~~~~~~~~ll~~~~~~~ai~~--~nD~~A~ 206 (288)
T 1gud_A 135 EVAIIEGKAGNASGEARRNGATEAFKKASQIKLVASQ-PADW-----DRIKALDVATNVLQRNPNIKAIYC--ANDTMAM 206 (288)
T ss_dssp EEEEEECSTTCHHHHHHHHHHHHHHHTCTTEEEEEEE-ECTT-----CHHHHHHHHHHHHHHCTTCCEEEE--SSHHHHH
T ss_pred EEEEEeCCCCCchHhHHHHHHHHHHHhCCCcEEEEee-cCCc-----cHHHHHHHHHHHHHhCCCceEEEE--CCCchHH
Confidence 9999987644321134466788889887 87654321 1111 113333444554332 4677554 6777888
Q ss_pred HHHHHHHHcCCC
Q 003821 155 HLFREAKEMGLV 166 (793)
Q Consensus 155 ~~l~~a~~~g~~ 166 (793)
-+++++++.|+.
T Consensus 207 g~~~al~~~G~~ 218 (288)
T 1gud_A 207 GVAQAVANAGKT 218 (288)
T ss_dssp HHHHHHHHTTCT
T ss_pred HHHHHHHhcCCC
Confidence 999999999984
No 158
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=93.24 E-value=0.57 Score=47.54 Aligned_cols=162 Identities=8% Similarity=-0.023 Sum_probs=91.9
Q ss_pred cceEEEE-cCCChhhHHHHHHhccCCCccEEeeeCCCCCCCCCCCCCCeEEEecCChHHHHHHHHHHHh-hcCce-----
Q 003821 5 KEVKVIV-GMETWGAATMVADIGSRAQVPVLSFAEPAIAPPLTSTRWPFLVRMANSSAEQITCTAALVG-SYNWR----- 77 (793)
Q Consensus 5 ~~V~aii-Gp~~s~~~~~va~i~~~~~iP~Is~~~~~~~~~l~~~~~~~~~r~~p~~~~~~~ai~~ll~-~~~w~----- 77 (793)
.+|.+|| .|..+.........+...+||+|..... .+.......+.+..+..++...+...++++. ..|-+
T Consensus 56 ~~vdgiii~~~~~~~~~~~~~~~~~~~iPvV~~~~~--~~~~~~~~~~~~~~V~~D~~~~g~~a~~~l~~~~g~~~~~~~ 133 (306)
T 8abp_A 56 SGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQ--FVNAKGKPMDTVPLVMLAATKIGERQGQELYKEMQKRGWDVK 133 (306)
T ss_dssp TTCCEEEEECSCGGGHHHHHHHHHHTTCEEEEESSC--CBCTTSCBCTTSCEEEECHHHHHHHHHHHHHHHHHHHTCCGG
T ss_pred cCCCEEEEeCCCchhhHHHHHHHHHCCCcEEEeCCC--CCCccccccccccEEecChhHHHHHHHHHHHHHHHhcCCCcc
Confidence 4576665 4455555555556677789999998754 2221111001122456677766776666654 33433
Q ss_pred EEEEEE-EcCCCccccccHHHHHHHHHhcCce---eeEEeecCCCCCCCCChHHHHHHHHHhhcC--CceEEEEeccChH
Q 003821 78 KVIIIY-EDDATNADTGNLALLSEALQISNSE---IEYRLVLPPISYLTDPKQFLQEKLLKLLRT--ESRVFIILQSSLA 151 (793)
Q Consensus 78 ~vaii~-~dd~~G~~~~~~~~l~~~l~~~g~~---v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~vivvl~~~~~ 151 (793)
+++++. ..........-.+.+.+.+++.|.. +... ..... ..+.-...+.++.+. .++++++++++..
T Consensus 134 ~i~~~~~~~~~~~~~~~R~~Gf~~~l~~~g~~~~~~~~~-~~~~~-----~~~~~~~~~~~~l~~~~~~~a~~i~~~nD~ 207 (306)
T 8abp_A 134 ESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQV-PTKSN-----DIPGAFDAANSMLVQHPEVKHWLIVGMNDS 207 (306)
T ss_dssp GEEEEEEECTTSHHHHHHHHHHHHHHHHHTCCGGGEEEE-ECSSS-----SHHHHHHHHHHHHTTCTTCSEEEEECSSHH
T ss_pred ceEEEEecCCCChHHHHHHHHHHHHHHhcCCCCcEEEee-ccCCC-----ChHHHHHHHHHHHHhCCCCceEEEEeCCcH
Confidence 899986 4433211145567788889888753 3222 11111 223455566666555 4555333256777
Q ss_pred HHHHHHHHHHHcCCCCCCeEEEEe
Q 003821 152 MGIHLFREAKEMGLVGPDSVWVIA 175 (793)
Q Consensus 152 ~~~~~l~~a~~~g~~~~~~~wi~~ 175 (793)
.+..+++++++.|+.- +-+-+++
T Consensus 208 ~A~g~~~al~~~g~~v-~di~vvG 230 (306)
T 8abp_A 208 TVLGGVRATEGQGFKA-ADIIGIG 230 (306)
T ss_dssp HHHHHHHHHHHTTCCG-GGEEEEE
T ss_pred HHHHHHHHHHHcCCCC-CceEEEE
Confidence 8888999999999864 3344444
No 159
>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A*
Probab=93.23 E-value=1 Score=46.10 Aligned_cols=156 Identities=17% Similarity=0.157 Sum_probs=89.2
Q ss_pred ccceEEEEcCCChhhHHHHHHhccCC-CccEEeeeCCCCCCCCCCCCCCeEEEecCChHHHHHHH----HHHHhhcCc-e
Q 003821 4 EKEVKVIVGMETWGAATMVADIGSRA-QVPVLSFAEPAIAPPLTSTRWPFLVRMANSSAEQITCT----AALVGSYNW-R 77 (793)
Q Consensus 4 ~~~V~aiiGp~~s~~~~~va~i~~~~-~iP~Is~~~~~~~~~l~~~~~~~~~r~~p~~~~~~~ai----~~ll~~~~w-~ 77 (793)
++++.+||..... ...++..++..+ ++|++..... .+. ... +-.+.. +..++..+ +.++...|- +
T Consensus 60 ~~~~dgIi~~~~~-~~~~~~~~a~~~p~~p~v~id~~--~~~--~~~---~~~v~~-d~~~~~~lag~~a~~l~~~Gh~r 130 (318)
T 2fqx_A 60 DENMGLVVACGSF-LVEAVIETSARFPKQKFLVIDAV--VQD--RDN---VVSAVF-GQNEGSFLVGVAAALKAKEAGKS 130 (318)
T ss_dssp HTTCSEEEEESTT-THHHHHHHHHHCTTSCEEEESSC--CCS--CTT---EEEEEE-CHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HcCCCEEEECChh-HHHHHHHHHHHCCCCEEEEEcCc--cCC--CCC---EEEEEe-chHHHHHHHHHHHHHHhccCCCc
Confidence 3567777753222 122344555443 8999987643 210 111 222333 34444444 466666777 8
Q ss_pred EEEEEEEcCCCccccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcCCceEEEEeccChHHHHHHH
Q 003821 78 KVIIIYEDDATNADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRTESRVFIILQSSLAMGIHLF 157 (793)
Q Consensus 78 ~vaii~~dd~~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivvl~~~~~~~~~~l 157 (793)
+|++|...+... .......+.+.+++.|..+.....+.... .++ ..-.....++.+.++++|+. .....+.-++
T Consensus 131 ~Ig~i~g~~~~~-~~~r~~Gf~~~~~~~~~~~~~~~~~~~~~--~~~-~~g~~~a~~ll~~~~daI~~--~~d~~a~Gv~ 204 (318)
T 2fqx_A 131 AVGFIVGMELGM-MPLFEAGFEAGVKAVDPDIQVVVEVANTF--SDP-QKGQALAAKLYDSGVNVIFQ--VAGGTGNGVI 204 (318)
T ss_dssp EEEEEESCCSTT-THHHHHHHHHHHHHHCTTCEEEEEECSCS--SCH-HHHHHHHHHHHHTTCCEEEE--ECGGGHHHHH
T ss_pred EEEEEeCcccHH-HHHHHHHHHHHHHHHCCCCEEEEEEccCc--cCH-HHHHHHHHHHHHCCCcEEEE--CCCCCchHHH
Confidence 999997654321 14557778888988887654333332211 111 22334455555567897654 5666788899
Q ss_pred HHHHHcCCCCCCeEEEEe
Q 003821 158 REAKEMGLVGPDSVWVIA 175 (793)
Q Consensus 158 ~~a~~~g~~~~~~~wi~~ 175 (793)
+++++.|+. |.-+++++
T Consensus 205 ~a~~e~g~~-P~dv~viG 221 (318)
T 2fqx_A 205 KEARDRRLN-GQDVWVIG 221 (318)
T ss_dssp HHHHHHHHT-TCCCEEEE
T ss_pred HHHHhhhhc-cCCcEEEE
Confidence 999998887 54456665
No 160
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*
Probab=92.66 E-value=0.22 Score=51.00 Aligned_cols=60 Identities=12% Similarity=0.043 Sum_probs=52.3
Q ss_pred ccccchhHHHHHHHHHhhcc-cc-ccccchhhHHHHHHHHHHHHHHHHHHhhhheeeeeccC
Q 003821 483 WNIQIGTALWFTFSSLFFAH-RE-RIYSNLTRLVVVVWLFVVLILNSSYTASLSSMLTVQRL 542 (793)
Q Consensus 483 ~~~~~~~~~~~~~~~l~~~~-~~-~~~s~s~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~ 542 (793)
...++.+++|+++.++...| ++ .|.+..+|++.+++.++++++.+.-++.+.+.++.+..
T Consensus 93 ~~~s~~~a~yfs~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~ig~i~~~~~~~~~ 154 (333)
T 1p7b_A 93 SPPGFVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALSTGLVFARFARPRA 154 (333)
T ss_dssp SSSSTHHHHHHHTTTTTTCCCSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCC
T ss_pred CCCcHHHhHhhhheeeeecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34568999999999999888 65 47889999999999999999999999999999887654
No 161
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=92.61 E-value=0.37 Score=43.07 Aligned_cols=53 Identities=13% Similarity=0.258 Sum_probs=47.5
Q ss_pred cchhHHHHHHHHHhhcc-cc-ccccchhhHHHHHHHHHHHHHHHHHHhhhheeee
Q 003821 486 QIGTALWFTFSSLFFAH-RE-RIYSNLTRLVVVVWLFVVLILNSSYTASLSSMLT 538 (793)
Q Consensus 486 ~~~~~~~~~~~~l~~~~-~~-~~~s~s~R~l~~~w~~~~lil~~~Yta~L~s~Lt 538 (793)
++.+++|+++.++...| ++ .|.+..+|++.++|.++++.+.+...+++.+.+.
T Consensus 52 ~~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~ 106 (148)
T 3vou_A 52 RPLDALYFSVVTLTTVGDGNFSPQTDFGKVFTILYIFIGIGLVFGFIHKLAVNVQ 106 (148)
T ss_dssp CHHHHHHHHHHHHTTCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred CHHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999998 66 4789999999999999999999999999987663
No 162
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*
Probab=92.26 E-value=0.39 Score=48.53 Aligned_cols=58 Identities=9% Similarity=0.031 Sum_probs=50.9
Q ss_pred cccchhHHHHHHHHHhhcc-cc-ccccchhhHHHHHHHHHHHHHHHHHHhhhheeeeecc
Q 003821 484 NIQIGTALWFTFSSLFFAH-RE-RIYSNLTRLVVVVWLFVVLILNSSYTASLSSMLTVQR 541 (793)
Q Consensus 484 ~~~~~~~~~~~~~~l~~~~-~~-~~~s~s~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~ 541 (793)
..++.+++|+++.++...| ++ .|.+..+|++.+++.++++++.+..++.+.+.++.+.
T Consensus 80 ~~s~~~a~yfs~vT~tTvGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~v~~~~~~~~ 139 (301)
T 1xl4_A 80 PGSFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYARFTRPT 139 (301)
T ss_dssp TTCHHHHHHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred cCCHHHHHHHhhhheeccCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 4568999999999999888 65 4799999999999999999999999999999887653
No 163
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=92.26 E-value=0.3 Score=47.24 Aligned_cols=73 Identities=10% Similarity=0.128 Sum_probs=57.0
Q ss_pred HHHHHHHhhhcccCCCCCCCccccchhHHHHHHHHHhhcc-cc-ccccchhhHHHHHHHHHHHHHHHHHHhhhheeeee
Q 003821 463 YTMSVVWFLEHRWNPEFNGPWNIQIGTALWFTFSSLFFAH-RE-RIYSNLTRLVVVVWLFVVLILNSSYTASLSSMLTV 539 (793)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~-~~~s~s~R~l~~~w~~~~lil~~~Yta~L~s~Lt~ 539 (793)
+.+.+++..|+..+ ++...++.+++|+++.++...| ++ .|.+..+|++.+++.+.++.+.+...+.+++.++.
T Consensus 146 ~~~~~~~~~e~~~~----~~~~~~~~~s~y~~~~t~tTvGyGdi~P~t~~~~~~~~~~~~~G~~~~~~~i~~i~~~~~~ 220 (223)
T 1orq_C 146 YGAFAIYIVEYPDP----NSSIKSVFDALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGISALTLLIGTVSNMFQK 220 (223)
T ss_dssp HHHHHHHHTTSSST----TCSCCSHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCc----CCCcCcchhHHHhHHhHHhccCCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455666665321 2223468999999999999888 66 47999999999999999999999999999887754
No 164
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=92.05 E-value=0.38 Score=50.46 Aligned_cols=136 Identities=15% Similarity=0.112 Sum_probs=85.0
Q ss_pred HhccCCCccEEeeeCCCCCCCCCCCCCCeEEEecCChHHHHHHHHHHHhhcCceEEEEEEEc------------------
Q 003821 24 DIGSRAQVPVLSFAEPAIAPPLTSTRWPFLVRMANSSAEQITCTAALVGSYNWRKVIIIYED------------------ 85 (793)
Q Consensus 24 ~i~~~~~iP~Is~~~~~~~~~l~~~~~~~~~r~~p~~~~~~~ai~~ll~~~~w~~vaii~~d------------------ 85 (793)
..+...++|+|..... .+ ....+ .+..++..-+..++++|...|-+++++|...
T Consensus 145 ~~l~~~~iPvV~i~~~--~~---~~~~~---~V~~D~~~~~~~a~~~L~~~G~r~I~~i~~~~~~~~~~g~~~~~~~~~~ 216 (366)
T 3h5t_A 145 DAIRARGLPAVIADQP--AR---EEGMP---FIAPNNRKAIAPAAQALIDAGHRKIGILSIRLDRANNDGEVTRERLENA 216 (366)
T ss_dssp HHHHHHTCCEEEESSC--CS---CTTCC---EEEECHHHHTHHHHHHHHHTTCCSEEEEEECCSSSCCCEECCHHHHHTC
T ss_pred HHHHHCCCCEEEECCc--cC---CCCCC---EEEeChHHHHHHHHHHHHHCCCCcEEEEecccccccccCcccccccccc
Confidence 4455669999987654 21 12233 3567777788888899988999999999832
Q ss_pred -CCCccccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhc--CCceEEEEeccChHHHHHHHHHHHH
Q 003821 86 -DATNADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLR--TESRVFIILQSSLAMGIHLFREAKE 162 (793)
Q Consensus 86 -d~~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~vivvl~~~~~~~~~~l~~a~~ 162 (793)
.... ..-.+.+.+++++.|+.+.....+.... ...+.-...+.++.+ ..+++|+. ++...+..+++++++
T Consensus 217 ~~~~~--~~R~~Gf~~al~~~g~~~~~~~~~~~~~---~~~~~~~~~~~~ll~~~~~~~ai~~--~nD~~A~g~~~al~~ 289 (366)
T 3h5t_A 217 QYQVQ--RDRVRGAMEVFIEAGIDPGTVPIMECWI---NNRQHNFEVAKELLETHPDLTAVLC--TVDALAFGVLEYLKS 289 (366)
T ss_dssp CCTTH--HHHHHHHHHHHHHHTCCGGGSCEEEESS---CCHHHHHHHHHHHHHHCTTCCEEEE--SSHHHHHHHHHHHHH
T ss_pred ccchH--HHHHHHHHHHHHHCCCCCCcceEEEcCC---CCHHHHHHHHHHHHcCCCCCcEEEE--CCcHHHHHHHHHHHH
Confidence 1112 4456778889999998643211111111 011233344455433 25787665 677788899999999
Q ss_pred cCCCCCCeEEEE
Q 003821 163 MGLVGPDSVWVI 174 (793)
Q Consensus 163 ~g~~~~~~~wi~ 174 (793)
.|+.-|+-+-++
T Consensus 290 ~G~~vP~disvi 301 (366)
T 3h5t_A 290 VGKSAPADLSLT 301 (366)
T ss_dssp TTCCTTTTCEEE
T ss_pred cCCCCCCceEEE
Confidence 999755433333
No 165
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=91.94 E-value=0.084 Score=53.83 Aligned_cols=142 Identities=9% Similarity=0.050 Sum_probs=87.5
Q ss_pred HHhccCCCccEEeeeCCCCCCCCCCCCCCeEEEecCChHHHHHHHHHHHhhcCceEEEEEEEcCCCccccccHHHHHHHH
Q 003821 23 ADIGSRAQVPVLSFAEPAIAPPLTSTRWPFLVRMANSSAEQITCTAALVGSYNWRKVIIIYEDDATNADTGNLALLSEAL 102 (793)
Q Consensus 23 a~i~~~~~iP~Is~~~~~~~~~l~~~~~~~~~r~~p~~~~~~~ai~~ll~~~~w~~vaii~~dd~~G~~~~~~~~l~~~l 102 (793)
...+...++|+|..... .+.. ...+ .+..++..-+..++++|...|-++|++|...........-.+.+.+++
T Consensus 85 ~~~~~~~~iPvV~~~~~--~~~~--~~~~---~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al 157 (301)
T 3miz_A 85 DPESGDVSIPTVMINCR--PQTR--ELLP---SIEPDDYQGARDLTRYLLERGHRRIGYIRLNPILLGAELRLDAFRRTT 157 (301)
T ss_dssp CCCCTTCCCCEEEEEEE--CSST--TSSC---EEEECHHHHHHHHHHHHHTTTCCSEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCEEEECCC--CCCC--CCCC---EEeeChHHHHHHHHHHHHHcCCCeEEEEecCccchhHHHHHHHHHHHH
Confidence 34556778999988765 2211 0223 466777788888899998899999999997655321145577788899
Q ss_pred HhcCceeeEEeecCC---CCCCCCChHHHHHHHHHhhcC--CceEEEEeccChHHHHHHHHHHHHcCCCCCCeEEEEe
Q 003821 103 QISNSEIEYRLVLPP---ISYLTDPKQFLQEKLLKLLRT--ESRVFIILQSSLAMGIHLFREAKEMGLVGPDSVWVIA 175 (793)
Q Consensus 103 ~~~g~~v~~~~~~~~---~~~~~~~~~~~~~~l~~l~~~--~~~vivvl~~~~~~~~~~l~~a~~~g~~~~~~~wi~~ 175 (793)
++.|+.+.....+.. ... .+... ....+.++.+. .+++|+. ++...+..+++++++.|+.-|+-+-+++
T Consensus 158 ~~~g~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~l~~~~~~~ai~~--~~d~~A~g~~~al~~~g~~vP~di~vig 231 (301)
T 3miz_A 158 SEFGLTENDLSISLGMDGPVG-AENNY-VFAAATEMLKQDDRPTAIMS--GNDEMAIQIYIAAMALGLRIPQDVSIVG 231 (301)
T ss_dssp HHHTCCGGGEEEEECEESSTT-SCEEC-HHHHHHHHHTSTTCCSEEEE--SSHHHHHHHHHHHHTTTCCHHHHCEEEC
T ss_pred HHcCCCCCcceEEEcCCCCcC-ccccH-HHHHHHHHHcCCCCCcEEEE--CCHHHHHHHHHHHHHcCCCCCCCeeEEE
Confidence 999986532222211 110 01111 11334444333 5777665 6777888999999999986443333443
No 166
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=91.81 E-value=0.93 Score=46.50 Aligned_cols=153 Identities=11% Similarity=0.000 Sum_probs=92.0
Q ss_pred cceEEEE-cCCChhhHHHHHHhccCCCccEEeeeCCCCCCCCCCCCCCeEEEecCChHHHHHHHHHHHhh-------cCc
Q 003821 5 KEVKVIV-GMETWGAATMVADIGSRAQVPVLSFAEPAIAPPLTSTRWPFLVRMANSSAEQITCTAALVGS-------YNW 76 (793)
Q Consensus 5 ~~V~aii-Gp~~s~~~~~va~i~~~~~iP~Is~~~~~~~~~l~~~~~~~~~r~~p~~~~~~~ai~~ll~~-------~~w 76 (793)
.+|.||| .|..+.........+...+||+|..... .+. ..... ..+..++...++.+++++.. .|-
T Consensus 58 ~~vdgiIi~~~~~~~~~~~~~~~~~~giPvV~~~~~--~~~--~~~~~--~~V~~D~~~~g~~a~~~l~~~~~~~~~~G~ 131 (330)
T 3uug_A 58 KGVKVLVIASIDGTTLSDVLKQAGEQGIKVIAYDRL--IRN--SGDVS--YYATFDNFQVGVLQATSITDKLGLKDGKGP 131 (330)
T ss_dssp HTCSEEEECCSSGGGGHHHHHHHHHTTCEEEEESSC--CCS--CTTCC--EEEEECHHHHHHHHHHHHHHHHTGGGTCCC
T ss_pred cCCCEEEEEcCCchhHHHHHHHHHHCCCCEEEECCC--CCC--CCcee--EEEEeCHHHHHHHHHHHHHHHhcccCCCCc
Confidence 4566665 4555545555666777889999998765 222 11222 24566777778888888766 689
Q ss_pred eEEEEEEEcCCCccccccHHHHHHHHHhc---C-ceeeEEe----ecCCCCCCCCChHHHHHHHHHhhc-----CCceEE
Q 003821 77 RKVIIIYEDDATNADTGNLALLSEALQIS---N-SEIEYRL----VLPPISYLTDPKQFLQEKLLKLLR-----TESRVF 143 (793)
Q Consensus 77 ~~vaii~~dd~~G~~~~~~~~l~~~l~~~---g-~~v~~~~----~~~~~~~~~~~~~~~~~~l~~l~~-----~~~~vi 143 (793)
++++++...........-.+.+.+++++. | +++.... .+.... . ....-...+.++.+ ..+++|
T Consensus 132 ~~i~~i~g~~~~~~~~~R~~Gf~~al~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~l~~~~~~~~~~ai 208 (330)
T 3uug_A 132 FNIELFGGSPDDNNAFFFYDGAMSVLKPYIDSGKLVVKSGQMGMDKVGTLR--W-DPATAQARMDNLLSAYYTDAKVDAV 208 (330)
T ss_dssp EEEEECBCCTTCHHHHHHHHHHHHHHHHHHHHTSEECTTCCCSHHHHBCGG--G-CHHHHHHHHHHHHHHHCSSSCCCEE
T ss_pred eEEEEEECCCCCchHHHHHHHHHHHHHhccccCceEEeecccccccccCCC--C-CHHHHHHHHHHHHHhcCCCCCeEEE
Confidence 99999976544211144567777888776 3 4432110 000011 1 11223344444433 467765
Q ss_pred EEeccChHHHHHHHHHHHHcCCCCC
Q 003821 144 IILQSSLAMGIHLFREAKEMGLVGP 168 (793)
Q Consensus 144 vvl~~~~~~~~~~l~~a~~~g~~~~ 168 (793)
+ +.+...+..+++++++.|+..|
T Consensus 209 ~--~~nd~~A~g~~~al~~~g~~vP 231 (330)
T 3uug_A 209 L--SPYDGLSIGIISSLKGVGYGTK 231 (330)
T ss_dssp E--CSSHHHHHHHHHHHHHTTCSSS
T ss_pred E--ECCCchHHHHHHHHHHcCCCCC
Confidence 4 4677788899999999999755
No 167
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=91.69 E-value=0.41 Score=53.69 Aligned_cols=52 Identities=12% Similarity=0.090 Sum_probs=42.5
Q ss_pred cchhHHHHHHHHHhhcc-ccc-cccchhhHHHHHHHHHHHHHHHHHHhh-hheee
Q 003821 486 QIGTALWFTFSSLFFAH-RER-IYSNLTRLVVVVWLFVVLILNSSYTAS-LSSML 537 (793)
Q Consensus 486 ~~~~~~~~~~~~l~~~~-~~~-~~s~s~R~l~~~w~~~~lil~~~Yta~-L~s~L 537 (793)
++.+++|+++.++...| ++. |.+..+|++.++|.++++.+.....+. +++++
T Consensus 51 ~~~~~~y~~~~t~tTvGygd~~p~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 105 (565)
T 4gx0_A 51 SFMAGIYWTITVMTTLGFGDITFESDAGYLFASIVTVSGVIFLDIILPFGFVSMF 105 (565)
T ss_dssp CHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred chhhhhheeeeeeeeecCCCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999888 664 688899999999999998877766665 44443
No 168
>3ixl_A Amdase, arylmalonate decarboxylase; enantioselective decarboxylation, lyase; HET: CME PAC; 1.45A {Bordetella bronchiseptica} PDB: 3ixm_A 2vlb_A 3dg9_A 3ip8_A* 3dtv_A* 3eis_A*
Probab=91.53 E-value=1.1 Score=43.76 Aligned_cols=82 Identities=11% Similarity=-0.059 Sum_probs=55.4
Q ss_pred HHHHHHHHHhhcCceEEEEEEEcCCCccccccHHHHHHHHHhcCceeeEEeecCCCCC---CCCChHHHHHHHHH-h-hc
Q 003821 63 QITCTAALVGSYNWRKVIIIYEDDATNADTGNLALLSEALQISNSEIEYRLVLPPISY---LTDPKQFLQEKLLK-L-LR 137 (793)
Q Consensus 63 ~~~ai~~ll~~~~w~~vaii~~dd~~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~---~~~~~~~~~~~l~~-l-~~ 137 (793)
-+.++++.++..|-+||+++.. |+ ....+.+++.+++.|+++........... ..-+...+.+.+.+ + ..
T Consensus 104 ~~~A~~~al~~~g~~rvglltp---y~--~~~~~~~~~~l~~~Giev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 178 (240)
T 3ixl_A 104 MSTAVLNGLRALGVRRVALATA---YI--DDVNERLAAFLAEESLVPTGCRSLGITGVEAMARVDTATLVDLCVRAFEAA 178 (240)
T ss_dssp HHHHHHHHHHHTTCSEEEEEES---SC--HHHHHHHHHHHHHTTCEEEEEEECCCCCHHHHHTCCHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHhCCCEEEEEeC---Ch--HHHHHHHHHHHHHCCCEEeccccCCCCCcchhhcCCHHHHHHHHHHHhhcC
Confidence 3577788888889999999975 66 66678888999999999876554332210 01123456666666 6 55
Q ss_pred CCceEEEEeccCh
Q 003821 138 TESRVFIILQSSL 150 (793)
Q Consensus 138 ~~~~vivvl~~~~ 150 (793)
.++|+||+ .|..
T Consensus 179 ~~adaivL-~CT~ 190 (240)
T 3ixl_A 179 PDSDGILL-SSGG 190 (240)
T ss_dssp TTCSEEEE-ECTT
T ss_pred CCCCEEEE-eCCC
Confidence 67787777 5543
No 169
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=90.86 E-value=0.012 Score=54.17 Aligned_cols=56 Identities=21% Similarity=0.196 Sum_probs=50.4
Q ss_pred cccchhHHHHHHHHHhhcc-cc-ccccchhhHHHHHHHHHHHHHHHHHHhhhheeeee
Q 003821 484 NIQIGTALWFTFSSLFFAH-RE-RIYSNLTRLVVVVWLFVVLILNSSYTASLSSMLTV 539 (793)
Q Consensus 484 ~~~~~~~~~~~~~~l~~~~-~~-~~~s~s~R~l~~~w~~~~lil~~~Yta~L~s~Lt~ 539 (793)
..++.+++|+++.++...| ++ .|.+..+|++.++|.++++++.+...+.+++.++.
T Consensus 65 ~~~~~~a~yf~~~T~tTvGyGDi~P~t~~~r~~~~~~~l~G~~~~~~~~~~i~~~~~~ 122 (166)
T 3pjs_K 65 LITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVG 122 (166)
T ss_dssp CCSTTTTTTTTHHHHSCCCCSSSCCCSSTTTTTTHHHHHHHHHHHHHHHTTSSSSSSS
T ss_pred cCCHHHHHHHHHHHhccccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3468899999999999888 66 47999999999999999999999999999999864
No 170
>3qi7_A Putative transcriptional regulator; periplasmic binding protein-like, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.86A {Clostridium difficile}
Probab=90.80 E-value=2.5 Score=43.74 Aligned_cols=154 Identities=13% Similarity=0.032 Sum_probs=90.0
Q ss_pred cccceEEEEcCCChhhHHHHHHhccCCCccEEeeeCCCCCCCCC---CCCCCeEEEecCChHHHHHHHHHHHhhcCceEE
Q 003821 3 KEKEVKVIVGMETWGAATMVADIGSRAQVPVLSFAEPAIAPPLT---STRWPFLVRMANSSAEQITCTAALVGSYNWRKV 79 (793)
Q Consensus 3 ~~~~V~aiiGp~~s~~~~~va~i~~~~~iP~Is~~~~~~~~~l~---~~~~~~~~r~~p~~~~~~~ai~~ll~~~~w~~v 79 (793)
.+.++.+||.-............+.+.+++.|-..+. ..... ... .- +.+..++..-+...++.|...|-+++
T Consensus 84 ~~~gyk~II~n~~~~~~~~~i~~lkekrvDgIIi~~~--~~ed~~~i~~~-~d-i~V~~Dn~~Ggy~A~~~Li~~Ghk~I 159 (371)
T 3qi7_A 84 DDKEVQAIVVSTDQAGLLPALQKVKEKRPEIITISAP--MGDDKNQLSQF-VD-VNLGVSAEERGKVLAERSKEMGAKAF 159 (371)
T ss_dssp GCTTEEEEEEECSSCCCHHHHHHHHHHCTTSEEEESS--CCSCHHHHHHH-SS-EEEECCHHHHHHHHHHHHHHTTCSCE
T ss_pred hcCCCeEEEEECCCcchHHHHHHHHhcCCCEEEEecc--ccccchhhccc-Cc-eEEEeChHHHHHHHHHHHHHCCCCEE
Confidence 4567777776443332344455566556665544433 11110 000 11 24556666666677799999999999
Q ss_pred EEEEEcCCCc--cccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhh---------c-CCceEEEEec
Q 003821 80 IIIYEDDATN--ADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLL---------R-TESRVFIILQ 147 (793)
Q Consensus 80 aii~~dd~~G--~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~---------~-~~~~vivvl~ 147 (793)
++|....+.. ....-.+.+++++++.|+++.....-.+ . . +.-....+++. + ..+++|+.
T Consensus 160 a~Isgp~~~~~~~~~~R~~Gyk~Al~e~Gi~~~~~~~~d~-t----~-e~G~~~a~~lL~~~~~~~~~~~~~~TAIFa-- 231 (371)
T 3qi7_A 160 IHYASTDDLKDVNIAKRLEMIKETCKNIGLPFVQVNTPNI-N----T-EEDKNKVKQFLNEDIEKQVKKYGKDINVFG-- 231 (371)
T ss_dssp EEEEETTGGGSHHHHHHHHHHHHHHHHTTCCEEEEEECCC-S----S-THHHHHHHHHHHHHHHHHHHHHCSCCEEEE--
T ss_pred EEEeccccccchhHHHHHHHHHHHHHHcCCCceeecCCCC-c----h-HHHHHHHHHHHhccccchhhccCCCcEEEE--
Confidence 9999865421 0022466788999999998765432111 1 1 11122232221 2 24566655
Q ss_pred cChHHHHHHHHHHHHcCCCCC
Q 003821 148 SSLAMGIHLFREAKEMGLVGP 168 (793)
Q Consensus 148 ~~~~~~~~~l~~a~~~g~~~~ 168 (793)
++-..|..+++++.+.|+.-|
T Consensus 232 tND~mAiG~ikal~e~Gi~VP 252 (371)
T 3qi7_A 232 VNEYMDEVILTKALELKYIVA 252 (371)
T ss_dssp SSHHHHHHHHHHHHHHCCBBC
T ss_pred CCHHHHHHHHHHHHHcCCccC
Confidence 888999999999999998543
No 171
>4ddd_A Immunogenic protein; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, immune system; 1.90A {Ehrlichia chaffeensis}
Probab=89.29 E-value=0.37 Score=49.72 Aligned_cols=61 Identities=16% Similarity=0.143 Sum_probs=40.1
Q ss_pred CCCChHHhhhCCCcccc-cCchHHH---HHHHhhcCCCCcc--ccccCCHHHHHHHhhcCceEEEEech
Q 003821 545 NVTDIGWLKASNLNVGF-DGDSFVR---NYLENVLGFKPEN--ILKVDHEYKYITDFESNRIAAAFLEL 607 (793)
Q Consensus 545 ~i~sl~dL~~~~~~~g~-~~~~~~~---~~l~~~~~~~~~~--~~~~~~~~~~~~~l~~g~~~a~~~~~ 607 (793)
+|+|++||+ +.++++ ..++..+ ..+.+..+..... ...|....+.+.++..|++|+++...
T Consensus 137 ~i~sl~DL~--gk~v~~~~~Gs~~~~~~~~~l~~~Gi~~~~v~~v~~~g~~~a~~aL~~G~vDa~~~~~ 203 (327)
T 4ddd_A 137 NISVIDDIK--GKRVNIGSPGTGVRVAMLKLLGEKGWTKKDFSVMAELKSSEQAQALCDNKIDVMVDVI 203 (327)
T ss_dssp SCCSGGGGT--TSEEECCSTTSHHHHHHHHHHHHHTCCGGGCSEEECCCHHHHHHHHHTTSCSBEEEEE
T ss_pred CCCCHHHhC--CCEEecCCCCccHHHHHHHHHHHcCCChHhcchhhcCCHHHHHHHHHcCCCCEEEEcc
Confidence 489999998 667766 2343222 2222333343322 35678889999999999999988743
No 172
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=89.18 E-value=0.42 Score=49.99 Aligned_cols=72 Identities=14% Similarity=0.129 Sum_probs=56.9
Q ss_pred HHHHHHHhhhcccCCCCCCCccccchhHHHHHHHHHhhcc-cc-ccccchhhHHHHHHHHHHHHHHHHHHhhhheeee
Q 003821 463 YTMSVVWFLEHRWNPEFNGPWNIQIGTALWFTFSSLFFAH-RE-RIYSNLTRLVVVVWLFVVLILNSSYTASLSSMLT 538 (793)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~-~~~s~s~R~l~~~w~~~~lil~~~Yta~L~s~Lt 538 (793)
+.+.+.+.+++..+++ ...++.+++|+++.++...| ++ .|.+..+|++.+++.++++++.+...+.+++.+.
T Consensus 142 ~~a~~~~~~e~~~~~~----~f~~~~~s~y~~~~t~ttvGygd~~p~t~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~ 215 (355)
T 3beh_A 142 AVALAAYVIERDIQPE----KFGSIPQAMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSGIGIFGLWAGILATGFY 215 (355)
T ss_dssp HHHHHHHHHHTTTCHH----HHSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCCCCc----ccccHHHHHHHHHhheeecCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777654322 12358899999999999888 65 4799999999999999999999999999988774
No 173
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Probab=88.72 E-value=1.3 Score=45.17 Aligned_cols=57 Identities=12% Similarity=0.133 Sum_probs=50.7
Q ss_pred cchhHHHHHHHHHhhcc-cc-ccccchhhHHHHHHHHHHHHHHHHHHhhhheeeeeccC
Q 003821 486 QIGTALWFTFSSLFFAH-RE-RIYSNLTRLVVVVWLFVVLILNSSYTASLSSMLTVQRL 542 (793)
Q Consensus 486 ~~~~~~~~~~~~l~~~~-~~-~~~s~s~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~ 542 (793)
++.+++|+++.++...| ++ .|.+..+|++.+++.+.++++.+.-++.+++.++.+..
T Consensus 78 s~~~a~y~s~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~i~~~~~~~~~ 136 (321)
T 2qks_A 78 GFGGAFFFSVETLATVGYGDMHPQTVYAHWIATLEIFVGMSSIALATGCAFIKMSQPKK 136 (321)
T ss_dssp THHHHHHHHHHHHTTCCCCSSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred chhheeeeeeEEeccccCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 68899999999999888 66 47999999999999999999999999999998876543
No 174
>2x7q_A Ca3427, possible thiamine biosynthesis enzyme; unknown function; 2.00A {Candida albicans} PDB: 2x7p_A
Probab=88.70 E-value=1.8 Score=44.31 Aligned_cols=107 Identities=13% Similarity=0.121 Sum_probs=58.1
Q ss_pred CCCChHHhhhCCCcccccC-chHHH---HHHHhhcCCCC-ccccccCCHHHHHHHhhcC----ceEEEEechhhHHHHHh
Q 003821 545 NVTDIGWLKASNLNVGFDG-DSFVR---NYLENVLGFKP-ENILKVDHEYKYITDFESN----RIAAAFLELSYERAFLS 615 (793)
Q Consensus 545 ~i~sl~dL~~~~~~~g~~~-~~~~~---~~l~~~~~~~~-~~~~~~~~~~~~~~~l~~g----~~~a~~~~~~~~~~~~~ 615 (793)
+|+|++|| .++|+.. ++... ..+....+.+. .++..+.+..+...++.+| ++||++.+.........
T Consensus 111 ~i~s~~DL----K~i~~~~~gs~~~~~~~~l~~~~Gl~~dv~~v~~~~~~~~~~al~~G~~~~~vDa~~~ep~~~~~~~~ 186 (321)
T 2x7q_A 111 DVTDAKQL----KRIGVSRIGSGSYVMSFVLAHQLGVPSFDQFQVLSNFKNLRDSVNLKDGVEGSDAFMWEYFTSKKYYD 186 (321)
T ss_dssp TCSSGGGC----CEEEESSTTSHHHHHHHHHHHHHTSCCCCEEEECCSHHHHHHHHTTCTTSCCCSEEEEEHHHHHHHHH
T ss_pred CCCChHHc----ceEEeeCCCcHHHHHHHHHHHhcCCCcceEEEEcCChHHHHHHHHcCCCccceEEEEecCccchhhcc
Confidence 48999999 5888854 44322 22322233332 3455666778899999999 99998765444333322
Q ss_pred ccCCceEEeCccccc-cceEEEecCC----Cc-----ChHHHHHHHHhhhcc
Q 003821 616 QHCKEYTATIPTYRF-GGFAFVFQKG----SP-----LAADFSEAILKLSEN 657 (793)
Q Consensus 616 ~~c~~~~~~~~~~~~-~~~~~~~~k~----sp-----l~~~in~~i~~l~e~ 657 (793)
... +..+.+.... ...+++++++ .| +...+.+++..+.++
T Consensus 187 -~g~-~~~~~d~~~~~~~~~l~~~~~~~~~~p~~v~~~~~a~~~a~~~~~~~ 236 (321)
T 2x7q_A 187 -NHE-IKQIDQIYTPWSSWVVATSSDSLQAKSDVIKNFIDAVNQGIQYYNEH 236 (321)
T ss_dssp -TTS-EEEEEEEECSSCSEEEEEEHHHHHHSHHHHHHHHHHHHHHHHHHHHC
T ss_pred -CCc-eEEccccCCCCceEEEEEcHHHHhhCHHHHHHHHHHHHHHHHHHHHC
Confidence 222 3433332222 2246666654 33 344444554444443
No 175
>2hqb_A Transcriptional activator of COMK gene; berkeley structure genomics center target 1957B, structural genomics, PSI; 2.70A {Bacillus halodurans}
Probab=88.30 E-value=13 Score=37.31 Aligned_cols=141 Identities=14% Similarity=0.094 Sum_probs=80.0
Q ss_pred ccceEEEEcCCChhhHHHHHHhccCC-CccEEeeeCCCCCCCCCCCCCCeEEEecCChHHHHHHHH-HHHhh-cCceEEE
Q 003821 4 EKEVKVIVGMETWGAATMVADIGSRA-QVPVLSFAEPAIAPPLTSTRWPFLVRMANSSAEQITCTA-ALVGS-YNWRKVI 80 (793)
Q Consensus 4 ~~~V~aiiGp~~s~~~~~va~i~~~~-~iP~Is~~~~~~~~~l~~~~~~~~~r~~p~~~~~~~ai~-~ll~~-~~w~~va 80 (793)
+++|.+||..... ...++..++..+ ++|++..... .+ ... +-.+...+ .++..++ .++.+ .+-++|+
T Consensus 61 ~~~vdgIi~~~~~-~~~~~~~~~~~~p~~p~v~id~~--~~---~~~---~~~v~~d~-~~g~~lag~la~~l~~~~~Ig 130 (296)
T 2hqb_A 61 DGGVNLIFGHGHA-FAEYFSTIHNQYPDVHFVSFNGE--VK---GEN---ITSLHFEG-YAMGYFGGMVAASMSETHKVG 130 (296)
T ss_dssp HTTCCEEEECSTH-HHHHHHTTTTSCTTSEEEEESCC--CC---SSS---EEEEEECC-HHHHHHHHHHHHHTCSSSEEE
T ss_pred HCCCCEEEEcCHh-HHHHHHHHHHHCCCCEEEEEecC--cC---CCC---EEEEEech-HHHHHHHHHHHHhhccCCeEE
Confidence 4578888875332 233455666554 8999876543 11 111 22233333 3444333 22323 2458999
Q ss_pred EEEEcCCCccccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcCCceEEEEeccChHHHHHHHHHH
Q 003821 81 IIYEDDATNADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRTESRVFIILQSSLAMGIHLFREA 160 (793)
Q Consensus 81 ii~~dd~~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivvl~~~~~~~~~~l~~a 160 (793)
+|...... . ....+.+.+++.|.. .....+... .+....-.....++.+.++++|+. +....+.-+++++
T Consensus 131 ~i~g~~~~---~-r~~Gf~~~~~~~~~~-~~~~~~~~~---~~~~~~g~~~a~~ll~~~~daI~~--~~D~~a~Gv~~a~ 200 (296)
T 2hqb_A 131 VIAAFPWQ---P-EVEGFVDGAKYMNES-EAFVRYVGE---WTDADKALELFQELQKEQVDVFYP--AGDGYHVPVVEAI 200 (296)
T ss_dssp EEESCTTC---H-HHHHHHHHHHHTTCC-EEEEEECSS---SSCHHHHHHHHHHHHTTTCCEEEC--CCTTTHHHHHHHH
T ss_pred EEcCcCch---h-hHHHHHHHHHHhCCC-eEEEEeecc---ccCHHHHHHHHHHHHHCCCcEEEE--CCCCCCHHHHHHH
Confidence 99865432 3 677888999998875 333223211 011122334455566667887553 6666778889999
Q ss_pred HHcC
Q 003821 161 KEMG 164 (793)
Q Consensus 161 ~~~g 164 (793)
++.|
T Consensus 201 ~e~G 204 (296)
T 2hqb_A 201 KDQG 204 (296)
T ss_dssp HHHT
T ss_pred HHcC
Confidence 9988
No 176
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=88.03 E-value=0.19 Score=52.24 Aligned_cols=125 Identities=10% Similarity=-0.086 Sum_probs=71.9
Q ss_pred cchhHHHHHHHHHhhcc-cc-ccccchhhHHHHHHHHHHHHHHHHHHhhhheeeeeccCCCCCCChHHhhhCCCcccccC
Q 003821 486 QIGTALWFTFSSLFFAH-RE-RIYSNLTRLVVVVWLFVVLILNSSYTASLSSMLTVQRLKPNVTDIGWLKASNLNVGFDG 563 (793)
Q Consensus 486 ~~~~~~~~~~~~l~~~~-~~-~~~s~s~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~~~~~~g~~~ 563 (793)
++.+++|+++.++...| ++ .|.+..+|++.++|.++++++.+...+.+++.++.......... ..... ..++.+.+
T Consensus 45 ~~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~viI~G 122 (336)
T 1lnq_A 45 SWTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFLINREQMKLMGL-IDVAK-SRHVVICG 122 (336)
T ss_dssp CSSTTHHHHHHHHTTCCCSSCCCCCSSHHHHHTHHHHTTSTTTTTHHHHHTTTC-------------------CEEEEES
T ss_pred CHHHHHHHHHHHhhcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhcc-cCCEEEEC
Confidence 48899999999999888 65 57899999999999999999999999999999877654432111 11111 22343333
Q ss_pred chHHHHHHHhhcCCCCccccccCCHHHHHHHhhcCceEEEEechhhHHHHH
Q 003821 564 DSFVRNYLENVLGFKPENILKVDHEYKYITDFESNRIAAAFLELSYERAFL 614 (793)
Q Consensus 564 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~ 614 (793)
....-..+.+.....+. +...+...+..+ +++....++..|....+.+.
T Consensus 123 ~G~~g~~l~~~L~~~g~-v~vid~~~~~~~-~~~~~~~~i~gd~~~~~~L~ 171 (336)
T 1lnq_A 123 WSESTLECLRELRGSEV-FVLAEDENVRKK-VLRSGANFVHGDPTRVSDLE 171 (336)
T ss_dssp CCHHHHHHHTTGGGSCE-EEEESCGGGHHH-HHHTTCEEEESCTTSHHHHH
T ss_pred CcHHHHHHHHHHHhCCc-EEEEeCChhhhh-HHhCCcEEEEeCCCCHHHHH
Confidence 22222333322212223 444555555555 55555666666655444443
No 177
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=83.95 E-value=4.4 Score=40.95 Aligned_cols=144 Identities=13% Similarity=0.111 Sum_probs=80.2
Q ss_pred ccceEEEEcCCChhhHHHHHHhccCCCccEEeeeCCCCCCCCC----C--CCCCeEEEecCChHHHHHHHHHHHhhc--C
Q 003821 4 EKEVKVIVGMETWGAATMVADIGSRAQVPVLSFAEPAIAPPLT----S--TRWPFLVRMANSSAEQITCTAALVGSY--N 75 (793)
Q Consensus 4 ~~~V~aiiGp~~s~~~~~va~i~~~~~iP~Is~~~~~~~~~l~----~--~~~~~~~r~~p~~~~~~~ai~~ll~~~--~ 75 (793)
++++.+|++ ..+..+.+++.. ..++|+|..+.+ +|... + ...+.+.-+.-.. -....+++++.. +
T Consensus 67 ~~~~DlIia-i~t~aa~a~~~~--~~~iPVVf~~v~--dp~~~~l~~~~~~~g~nvtGv~~~~--~~~~~l~l~~~l~P~ 139 (302)
T 3lkv_A 67 GENPDVLVG-IATPTAQALVSA--TKTIPIVFTAVT--DPVGAKLVKQLEQPGKNVTGLSDLS--PVEQHVELIKEILPN 139 (302)
T ss_dssp TTCCSEEEE-ESHHHHHHHHHH--CSSSCEEEEEES--CTTTTTSCSCSSSCCSSEEEEECCC--CHHHHHHHHHHHSTT
T ss_pred hcCCcEEEE-cCCHHHHHHHhh--cCCCCeEEEecC--CcchhhhcccccCCCCcEEEEECCc--CHHHHHHHHHHhCCC
Confidence 356778876 344555555544 357999977766 55432 1 1112333332211 123334555442 6
Q ss_pred ceEEEEEEEcCCCccccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcCCceEEEEeccChHHH--
Q 003821 76 WRKVIIIYEDDATNADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRTESRVFIILQSSLAMG-- 153 (793)
Q Consensus 76 w~~vaii~~dd~~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivvl~~~~~~~-- 153 (793)
.++|++||+..+-+ .....+.+++.+++.|++++.. .... ..++...+..+. .+.+++++ ..+....
T Consensus 140 ~k~vgvi~~~~~~~-s~~~~~~~~~~~~~~g~~~v~~-~~~~-------~~~~~~~~~~l~-~~~d~i~~-~~d~~~~~~ 208 (302)
T 3lkv_A 140 VKSIGVVYNPGEAN-AVSLMELLKLSAAKHGIKLVEA-TALK-------SADVQSATQAIA-EKSDVIYA-LIDNTVASA 208 (302)
T ss_dssp CCEEEEEECTTCHH-HHHHHHHHHHHHHHTTCEEEEE-ECSS-------GGGHHHHHHHHH-TTCSEEEE-CSCHHHHHT
T ss_pred CCEEEEEeCCCccc-HHHHHHHHHHHHHHcCCEEEEE-ecCC-------hHHHHHHHHhcc-CCeeEEEE-eCCcchhhH
Confidence 89999999887632 1445777888999999987644 2222 134666666665 46787776 4443222
Q ss_pred -HHHHHHHHHcCC
Q 003821 154 -IHLFREAKEMGL 165 (793)
Q Consensus 154 -~~~l~~a~~~g~ 165 (793)
..+...+.+.+.
T Consensus 209 ~~~i~~~~~~~~i 221 (302)
T 3lkv_A 209 IEGMIVAANQAKT 221 (302)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHhhcCC
Confidence 233444444444
No 178
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=82.89 E-value=2 Score=47.15 Aligned_cols=56 Identities=11% Similarity=0.046 Sum_probs=47.9
Q ss_pred cccchhHHHHHHHHHhhcc-cc-ccccchhhHHHHHHHHHHHHHHHHHHhhhheeeee
Q 003821 484 NIQIGTALWFTFSSLFFAH-RE-RIYSNLTRLVVVVWLFVVLILNSSYTASLSSMLTV 539 (793)
Q Consensus 484 ~~~~~~~~~~~~~~l~~~~-~~-~~~s~s~R~l~~~w~~~~lil~~~Yta~L~s~Lt~ 539 (793)
..++.+++|+++.++...| ++ .|.+..+|++.++++++++++.+.+.|.+.+.+..
T Consensus 373 F~s~~~a~y~~~vT~TTvGYGDi~P~t~~gr~f~~~~~l~G~~~l~l~iavI~~~f~~ 430 (514)
T 2r9r_B 373 FPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNY 430 (514)
T ss_dssp CSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred ccchhhhhheeeeEEEecccCCCCCCCcchHhhehhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3468899999999999888 55 47888899999999999999999999998876543
No 179
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=80.88 E-value=2.2 Score=42.29 Aligned_cols=61 Identities=11% Similarity=0.181 Sum_probs=48.6
Q ss_pred cchhHHHHHHHHHhhcc-ccc-cccch-------hhHHHHHHHHHHHHHHHHHHhhhheeeeeccCCCCC
Q 003821 486 QIGTALWFTFSSLFFAH-RER-IYSNL-------TRLVVVVWLFVVLILNSSYTASLSSMLTVQRLKPNV 546 (793)
Q Consensus 486 ~~~~~~~~~~~~l~~~~-~~~-~~s~s-------~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i 546 (793)
++.+++|+++.++.-.| ++. |.+.. .|++..+|.++++.+.....+.++..+...+....+
T Consensus 201 s~~da~y~~~iTltTvGyGD~~p~t~~~~~~~~l~r~~~~~~il~Gl~~~~~~~~~i~~~~~~~~l~~~~ 270 (280)
T 3ukm_A 201 NFLESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKIGITCYLLLGLIAMLVVLETFCELHELKKFRKMF 270 (280)
T ss_dssp CHHHHHHHHHHHHTTCCCCSCCSSCSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHTT
T ss_pred chhhhhhheeeeeecccCCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37899999999999888 553 54443 599999999999999999999998877655544433
No 180
>2g29_A Nitrate transport protein NRTA; solute-binding protein, alpha-beta protein; 1.50A {Synechocystis SP}
Probab=80.44 E-value=2.3 Score=45.37 Aligned_cols=103 Identities=14% Similarity=0.105 Sum_probs=58.6
Q ss_pred HHhhhCCCccccc-CchHHHH----HHHhhcCCCC---ccccccCCHHHHHHHhhcCceEEEEechhhHHHHHhccCCc-
Q 003821 550 GWLKASNLNVGFD-GDSFVRN----YLENVLGFKP---ENILKVDHEYKYITDFESNRIAAAFLELSYERAFLSQHCKE- 620 (793)
Q Consensus 550 ~dL~~~~~~~g~~-~~~~~~~----~l~~~~~~~~---~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~c~~- 620 (793)
+||+ |.++|+. .++.... ++.. .+... .++..+ ...+...+|.+|++|+++...++......+....
T Consensus 151 ~dLk--Gk~iav~~~gs~~~~~l~~~L~~-~Gl~~~~dv~~v~~-~~~~~~~aL~~G~vDa~~~~eP~~~~~~~~g~~~~ 226 (417)
T 2g29_A 151 AKVT--DPKVAMTFPGGTHDMWIRYWLAA-GGMEPGKDFSTIVV-PPAQMVANVKVNAMESFCVGEPWPLQTVNQGVGYQ 226 (417)
T ss_dssp HTSS--SCEEEESSTTSHHHHHHHHHHHH-TTCCBTTTBEEEEC-CGGGHHHHHHTTSCSEEEEETTHHHHHHHHTSCEE
T ss_pred HhcC--CCEEEEeCCCCHHHHHHHHHHHH-cCCCCCCceEEEEC-CHHHHHHHHHcCCCCEEEeCCCHHHHHHHcCCCEE
Confidence 6776 8999986 3543322 2333 23332 234444 4578899999999999998877776555543221
Q ss_pred eEEeCcccccc-ceEEEecCC----Cc-----ChHHHHHHHHhhhc
Q 003821 621 YTATIPTYRFG-GFAFVFQKG----SP-----LAADFSEAILKLSE 656 (793)
Q Consensus 621 ~~~~~~~~~~~-~~~~~~~k~----sp-----l~~~in~~i~~l~e 656 (793)
+....+..... ...++++++ .| +...+.++...+.+
T Consensus 227 ~~~~~~~~~~~p~~~l~~~~~~~~~~p~~~~~~~~A~~~A~~~~~~ 272 (417)
T 2g29_A 227 ALTTGQLWKDHPEKAFGMRADWVDQNPKAAKALLMAVMEAQQWCDQ 272 (417)
T ss_dssp EEEGGGTBTTCBCEEEEEEHHHHHHCHHHHHHHHHHHHHHHHHHHC
T ss_pred EEechhhcCCCceEEEEECHHHHHHCHHHHHHHHHHHHHHHHHHhC
Confidence 22222332222 246777754 34 34455566666654
No 181
>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics,struct proteomics in europe, spine; 2.70A {Klebsiella pneumoniae}
Probab=78.22 E-value=10 Score=39.82 Aligned_cols=89 Identities=10% Similarity=0.049 Sum_probs=60.7
Q ss_pred HHHHHHhhcCceEEEEEEEcCCCcccc--ccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcCCceEE
Q 003821 66 CTAALVGSYNWRKVIIIYEDDATNADT--GNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRTESRVF 143 (793)
Q Consensus 66 ai~~ll~~~~w~~vaii~~dd~~G~~~--~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vi 143 (793)
.+.++++.+|.+++.||++..... . +..+.+.+.|++.|+++.....+.+.. +.+.+.+.+..+++.++|+|
T Consensus 23 ~l~~~l~~~g~~~~livtd~~~~~--~~~g~~~~v~~~L~~~g~~~~~~~~~~~~p----~~~~v~~~~~~~~~~~~d~I 96 (387)
T 3bfj_A 23 VVGERCQLLGGKKALLVTDKGLRA--IKDGAVDKTLHYLREAGIEVAIFDGVEPNP----KDTNVRDGLAVFRREQCDII 96 (387)
T ss_dssp GHHHHHHHTTCSEEEEECCTTTC----CCSSHHHHHHHHHHTTCEEEEECCCCSSC----BHHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHcCCCEEEEEECcchhh--ccchHHHHHHHHHHHcCCeEEEECCccCCC----CHHHHHHHHHHHHhcCCCEE
Confidence 456677778889999999876653 4 479999999999998764322233322 34567778888888899999
Q ss_pred EEecc-ChHHHHHHHHHH
Q 003821 144 IILQS-SLAMGIHLFREA 160 (793)
Q Consensus 144 vvl~~-~~~~~~~~l~~a 160 (793)
|.+.+ +.-++.+++...
T Consensus 97 IavGGGsv~D~aK~iA~~ 114 (387)
T 3bfj_A 97 VTVGGGSPHDCGKGIGIA 114 (387)
T ss_dssp EEEESHHHHHHHHHHHHH
T ss_pred EEeCCcchhhHHHHHHHH
Confidence 87433 244555555554
No 182
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=78.13 E-value=24 Score=28.31 Aligned_cols=98 Identities=15% Similarity=0.236 Sum_probs=65.2
Q ss_pred EEEecCChHHHHHHHHHHHhhcCceEEEEEEEcCCCccccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHH
Q 003821 53 LVRMANSSAEQITCTAALVGSYNWRKVIIIYEDDATNADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKL 132 (793)
Q Consensus 53 ~~r~~p~~~~~~~ai~~ll~~~~w~~vaii~~dd~~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l 132 (793)
+|-+..++...-..++.-++..|- +|.++|+|.+- ..-.+++. .+++.|+.+... . ...||...+
T Consensus 4 ifvvfssdpeilkeivreikrqgv-rvvllysdqde---krrrerle-efekqgvdvrtv---e-------dkedfreni 68 (162)
T 2l82_A 4 IFVVFSSDPEILKEIVREIKRQGV-RVVLLYSDQDE---KRRRERLE-EFEKQGVDVRTV---E-------DKEDFRENI 68 (162)
T ss_dssp EEEEEESCHHHHHHHHHHHHHTTC-EEEEEECCSCH---HHHHHHHH-HHHTTTCEEEEC---C-------SHHHHHHHH
T ss_pred EEEEecCCHHHHHHHHHHHHhCCe-EEEEEecCchH---HHHHHHHH-HHHHcCCceeee---c-------cHHHHHHHH
Confidence 345667777777888888888775 67888988763 33344443 577888875432 2 236787777
Q ss_pred HHhhcC--CceEEEEeccC-hHHHHHHHHHHHHcCC
Q 003821 133 LKLLRT--ESRVFIILQSS-LAMGIHLFREAKEMGL 165 (793)
Q Consensus 133 ~~l~~~--~~~vivvl~~~-~~~~~~~l~~a~~~g~ 165 (793)
..|-.. +-++++++... .+-...++..|++.|.
T Consensus 69 reiwerypqldvvvivttddkewikdfieeakergv 104 (162)
T 2l82_A 69 REIWERYPQLDVVVIVTTDDKEWIKDFIEEAKERGV 104 (162)
T ss_dssp HHHHHHCTTCCEEEEEECCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHhCCCCcEEEEEecCcHHHHHHHHHHHHhcCc
Confidence 777554 45665552333 4557789999999987
No 183
>3jv9_A OXYR, transcriptional regulator, LYSR family; LYSR-type transcriptional regulator, LTTR, redox, structural genomics, OPPF; 2.39A {Neisseria meningitidis}
Probab=75.18 E-value=24 Score=32.46 Aligned_cols=104 Identities=9% Similarity=-0.014 Sum_probs=56.3
Q ss_pred CChHHhhhCCCcccc-cCchHHHHHHHhhcC--------CCCccccccCCHHHHHHHhhcCceEEEEechhhHHHHHhcc
Q 003821 547 TDIGWLKASNLNVGF-DGDSFVRNYLENVLG--------FKPENILKVDHEYKYITDFESNRIAAAFLELSYERAFLSQH 617 (793)
Q Consensus 547 ~sl~dL~~~~~~~g~-~~~~~~~~~l~~~~~--------~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~ 617 (793)
-+++||. +.++.. ..+......+.+... .........++.+...+.+..|..-+++-+..... + +.
T Consensus 94 ~~~~~L~--~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~g~gi~~~p~~~~~~-~--~~ 168 (219)
T 3jv9_A 94 VSPRMLG--EEQVLLLTEGNCMRDQVLSSCSELAAKQRIQGLTNTLQGSSINTIRHMVASGLAISVLPATALTE-N--DH 168 (219)
T ss_dssp CCSSTTS--SSCEEEECTTCHHHHHHHHHCSTTHHHHHHHTTTSSCEESSHHHHHHHHHHTSCEEEEEGGGCCT-T--CT
T ss_pred CCHHHhc--CCcEEEecCCccHHHHHHHHHHhhhhhhccCCCCceEEeCCHHHHHHHHHcCCcEEehhHHHHHh-c--cC
Confidence 4677776 444433 233333333333211 12233346688889999999998666665544433 2 22
Q ss_pred CCceEEeC--ccccccceEEEecCCCcChHHHHHHHHhhhc
Q 003821 618 CKEYTATI--PTYRFGGFAFVFQKGSPLAADFSEAILKLSE 656 (793)
Q Consensus 618 c~~~~~~~--~~~~~~~~~~~~~k~spl~~~in~~i~~l~e 656 (793)
.+ +..+. .......++++.+++......+...+..+.+
T Consensus 169 ~~-l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~ 208 (219)
T 3jv9_A 169 ML-FSIIPFEGTPPSRRVVLAYRRNFVRPKALSAMKAAIMQ 208 (219)
T ss_dssp TT-EEEECCSSSCCEEEEEEEEETTCSCHHHHHHHHHHHHT
T ss_pred Cc-EEEEecCCCCcceeEEEEEecCccccHHHHHHHHHHHh
Confidence 22 33332 2223346778888887766666655555544
No 184
>3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus}
Probab=74.61 E-value=36 Score=35.07 Aligned_cols=142 Identities=8% Similarity=0.025 Sum_probs=82.2
Q ss_pred ccceEEEEcCCChhhHHHHHHhccCC-CccEEeeeCCCCCCCCCCCCCCeEEEecCChHHHHHHHHH----HHhhcCceE
Q 003821 4 EKEVKVIVGMETWGAATMVADIGSRA-QVPVLSFAEPAIAPPLTSTRWPFLVRMANSSAEQITCTAA----LVGSYNWRK 78 (793)
Q Consensus 4 ~~~V~aiiGp~~s~~~~~va~i~~~~-~iP~Is~~~~~~~~~l~~~~~~~~~r~~p~~~~~~~ai~~----ll~~~~w~~ 78 (793)
++++..||+.. .....++..++.++ ++|++..... .+. ..-..+++ +..++..++- ++.. =++
T Consensus 84 ~~g~d~Ii~~g-~~~~~~~~~vA~~~Pdv~fv~id~~--~~~--~Nv~sv~~-----~~~eg~ylaG~~A~~~tk--~~k 151 (356)
T 3s99_A 84 RAGNKLIFTTS-FGYMDPTVKVAKKFPDVKFEHATGY--KTA--DNMSAYNA-----RFYEGRYVQGVIAAKMSK--KGI 151 (356)
T ss_dssp HTTCSEEEECS-GGGHHHHHHHHTTCTTSEEEEESCC--CCB--TTEEEEEE-----CHHHHHHHHHHHHHHHCS--SCE
T ss_pred HCCCCEEEECC-HHHHHHHHHHHHHCCCCEEEEEecc--ccC--CcEEEEEe-----chhHHHHHHHHHHHHhcC--CCE
Confidence 45788888863 44566777887776 7888876443 111 11112233 2344444444 4432 479
Q ss_pred EEEEEEcCCCccccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcCCceEEEEeccChHHHHHHHH
Q 003821 79 VIIIYEDDATNADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRTESRVFIILQSSLAMGIHLFR 158 (793)
Q Consensus 79 vaii~~dd~~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivvl~~~~~~~~~~l~ 158 (793)
|++|...+... .......+...++..+..+.....+... ..|+ ..-......+.+.++|+|+. ..... -+++
T Consensus 152 IGfVgg~~~p~-v~~~~~GF~~G~k~~np~i~v~~~~~g~--~~d~-~kg~~~a~~l~~~G~DvIf~-~~d~~---Gv~~ 223 (356)
T 3s99_A 152 AGYIGSVPVPE-VVQGINSFMLGAQSVNPDFRVKVIWVNS--WFDP-GKEADAAKALIDQGVDIITQ-HTDST---AAIQ 223 (356)
T ss_dssp EEEEECCCCHH-HHHHHHHHHHHHHTTCTTCEEEEEECSS--SCCH-HHHHHHHHHHHHTTCSEEEE-SSSSS---HHHH
T ss_pred EEEECCCccHH-HHHHHHHHHHHHHHHCCCCEEEEEECCC--CCCh-HHHHHHHHHHHhCCCcEEEE-CCCch---HHHH
Confidence 99998755321 1345677888888877665544444321 1122 22344556666778998776 44432 5789
Q ss_pred HHHHcCC
Q 003821 159 EAKEMGL 165 (793)
Q Consensus 159 ~a~~~g~ 165 (793)
+|++.|.
T Consensus 224 aa~e~Gv 230 (356)
T 3s99_A 224 VAHDRGI 230 (356)
T ss_dssp HHHHTTC
T ss_pred HHHHcCC
Confidence 9999874
No 185
>3oxn_A Putative transcriptional regulator, LYSR family; structural genomics, PSI-2, protein structure initiative; 2.70A {Vibrio parahaemolyticus}
Probab=74.57 E-value=37 Score=32.03 Aligned_cols=106 Identities=7% Similarity=-0.053 Sum_probs=54.4
Q ss_pred CCChHHhhhCCCcccc-cCchHHHHHHHhhcC--CCCccccccCCHHHHHHHhhcCceEEEEechhhHHHHHhccCCceE
Q 003821 546 VTDIGWLKASNLNVGF-DGDSFVRNYLENVLG--FKPENILKVDHEYKYITDFESNRIAAAFLELSYERAFLSQHCKEYT 622 (793)
Q Consensus 546 i~sl~dL~~~~~~~g~-~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~c~~~~ 622 (793)
.-+++||. +.++.. ..+......+..... .........++.......+..|..-+++.+.. ....... .+ +.
T Consensus 107 ~i~~~dL~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~giailp~~~-~~~~~~~-~~-l~ 181 (241)
T 3oxn_A 107 EMSLDDYL--SHPHAMIAISDGVKALIEQALIDKPQRKMVLRAYHLEAALAIVDTLPIIITVPADL-AYLVAER-YD-LV 181 (241)
T ss_dssp CCCHHHHH--TSEEEECSCCHHHHHHHHHHSTTSCCCEEEEECSSTHHHHHHC--CCCEEEEEHHH-HHHHHHH-TT-EE
T ss_pred CCCHHHHh--cCCeEEEecCCCccchhHHHHHhhccceEEEECCcHHHHHHHHhCCCeEEEcHHHH-HHHhccc-CC-ce
Confidence 35788998 555544 223333333333211 22223345678888899999987666655443 3333322 11 33
Q ss_pred EeC--ccccccceEEEecCCCcChHHHHHHHHhhhc
Q 003821 623 ATI--PTYRFGGFAFVFQKGSPLAADFSEAILKLSE 656 (793)
Q Consensus 623 ~~~--~~~~~~~~~~~~~k~spl~~~in~~i~~l~e 656 (793)
.+. .......++++.+++.+....+...+..+.+
T Consensus 182 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~ 217 (241)
T 3oxn_A 182 VKPLPFQFTPFDYSMIWHARCEHSPAQEWLRSVVRE 217 (241)
T ss_dssp EECCSSCCCCCCEEEEEEGGGTTCHHHHHHHHHHHH
T ss_pred EeCCCCCCCcccEEEEEcCcCCCCchhHHHHHHHHH
Confidence 332 2233456788888886655555555554444
No 186
>3ox4_A Alcohol dehydrogenase 2; iron, NAD, oxidoreductase; HET: NAD; 2.00A {Zymomonas mobilis} PDB: 3owo_A*
Probab=73.07 E-value=5.5 Score=41.77 Aligned_cols=92 Identities=11% Similarity=0.056 Sum_probs=62.9
Q ss_pred HHHHHHHHhhcCceEEEEEEEcCCCccccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcCCceEE
Q 003821 64 ITCTAALVGSYNWRKVIIIYEDDATNADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRTESRVF 143 (793)
Q Consensus 64 ~~ai~~ll~~~~w~~vaii~~dd~~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vi 143 (793)
...+.++++.+|.+++.||++..-.. .+..+.+.+.|++.|+++.....+.+.. +.+.+.+.+..+++.++|+|
T Consensus 19 ~~~l~~~~~~~g~~~~liVtd~~~~~--~g~~~~v~~~L~~~gi~~~~~~~v~~~p----~~~~v~~~~~~~~~~~~D~I 92 (383)
T 3ox4_A 19 LEKAIKDLNGSGFKNALIVSDAFMNK--SGVVKQVADLLKAQGINSAVYDGVMPNP----TVTAVLEGLKILKDNNSDFV 92 (383)
T ss_dssp HHHHHHTTTTSCCCEEEEEEEHHHHH--TTHHHHHHHHHHTTTCEEEEEEEECSSC----BHHHHHHHHHHHHHHTCSEE
T ss_pred HHHHHHHHHHcCCCEEEEEECCchhh--CchHHHHHHHHHHcCCeEEEECCccCCC----CHHHHHHHHHHHHhcCcCEE
Confidence 34567788889999999999875432 3468999999999998875433444433 34567777778888899998
Q ss_pred EEeccC-hHHHHHHHHHHH
Q 003821 144 IILQSS-LAMGIHLFREAK 161 (793)
Q Consensus 144 vvl~~~-~~~~~~~l~~a~ 161 (793)
|-+.+. .-++.+++....
T Consensus 93 IavGGGsv~D~aK~ia~~~ 111 (383)
T 3ox4_A 93 ISLGGGSPHDCAKAIALVA 111 (383)
T ss_dssp EEEESHHHHHHHHHHHHHH
T ss_pred EEeCCcHHHHHHHHHHHHH
Confidence 873322 234555554444
No 187
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=71.66 E-value=22 Score=27.62 Aligned_cols=100 Identities=18% Similarity=0.147 Sum_probs=57.8
Q ss_pred CeEEEecCChHHHHHHHHHHHhhcCceEEEEEEEcCCCccccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHH
Q 003821 51 PFLVRMANSSAEQITCTAALVGSYNWRKVIIIYEDDATNADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQE 130 (793)
Q Consensus 51 ~~~~r~~p~~~~~~~ai~~ll~~~~w~~vaii~~dd~~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~ 130 (793)
.|-.|+.-+....-..+-++++.|+-+-|.++.+|.+|. +.-....+..|..+. .+.|++.+ ..+..
T Consensus 26 gfkvrtvrspqelkdsieelvkkynativvvvvddkewa------ekairfvkslgaqvl-iiiydqdq------nrlee 92 (134)
T 2l69_A 26 GFKVRTVRSPQELKDSIEELVKKYNATIVVVVVDDKEWA------EKAIRFVKSLGAQVL-IIIYDQDQ------NRLEE 92 (134)
T ss_dssp TCEEEEECSHHHHHHHHHHHTTCCCCEEEEEECSSHHHH------HHHHHHHHHHCCCCE-EEEECSCH------HHHHH
T ss_pred CceEEEecCHHHHHHHHHHHHHHhCCeEEEEEEccHHHH------HHHHHHHHhcCCeEE-EEEEeCch------hHHHH
Confidence 455788888888888888888888888777777665552 333333444565543 33455443 22333
Q ss_pred HHHHhhcCCceEEEEeccChHHHHHHHHH-HHHcCC
Q 003821 131 KLLKLLRTESRVFIILQSSLAMGIHLFRE-AKEMGL 165 (793)
Q Consensus 131 ~l~~l~~~~~~vivvl~~~~~~~~~~l~~-a~~~g~ 165 (793)
.-...+..+-.+--+ .++++...-++. .++.|-
T Consensus 93 fsrevrrrgfevrtv--tspddfkkslerlirevgs 126 (134)
T 2l69_A 93 FSREVRRRGFEVRTV--TSPDDFKKSLERLIREVGS 126 (134)
T ss_dssp HHHHHHHTTCCEEEE--SSHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHhcCceEEEe--cChHHHHHHHHHHHHHhcc
Confidence 333345556666555 666666554433 444553
No 188
>2xed_A Putative maleate isomerase; nicotinic acid catabolism, cofactor-independent CIS-trans isomerase; 1.95A {Nocardia farcinica} PDB: 2xec_A
Probab=68.38 E-value=19 Score=35.48 Aligned_cols=80 Identities=10% Similarity=-0.012 Sum_probs=51.6
Q ss_pred HHHHHHHHhhcCceEEEEEEEcCCCccccccHHHHHHHHHhcCceeeEEeecCCCCC---CCCChHHHHHHHHHhhcCCc
Q 003821 64 ITCTAALVGSYNWRKVIIIYEDDATNADTGNLALLSEALQISNSEIEYRLVLPPISY---LTDPKQFLQEKLLKLLRTES 140 (793)
Q Consensus 64 ~~ai~~ll~~~~w~~vaii~~dd~~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~---~~~~~~~~~~~l~~l~~~~~ 140 (793)
+.++++.++..|-+||+|+. .|+ ....+.+++.+++.|+++........... .......+.+.++++...++
T Consensus 134 ~~A~~~al~~~g~~rvgvlt---p~~--~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~g~~~~~~l~~~~~~l~~~ga 208 (273)
T 2xed_A 134 AGALVEGLRALDAQRVALVT---PYM--RPLAEKVVAYLEAEGFTISDWRALEVADNTEVGCIPGEQVMAAARSLDLSEV 208 (273)
T ss_dssp HHHHHHHHHHTTCCEEEEEE---CSC--HHHHHHHHHHHHHTTCEEEEEEECCCCBHHHHHTCCHHHHHHHHHHSCCTTC
T ss_pred HHHHHHHHHHcCCCeEEEEc---CCh--hhhHHHHHHHHHHCCCEEeccccCCCccchhhcccCHHHHHHHHHHHhhCCC
Confidence 45566666777889999995 454 44556888899999998765544332110 01123446666777766678
Q ss_pred eEEEEec-cC
Q 003821 141 RVFIILQ-SS 149 (793)
Q Consensus 141 ~vivvl~-~~ 149 (793)
|+||+ . |.
T Consensus 209 daIvL-g~CT 217 (273)
T 2xed_A 209 DALVI-SCAV 217 (273)
T ss_dssp SEEEE-ESSS
T ss_pred CEEEE-cCCC
Confidence 88888 5 54
No 189
>2nr1_A NR1 M2, M2; receptor, signal, postsynaptic membrane; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=68.17 E-value=2 Score=24.94 Aligned_cols=17 Identities=24% Similarity=0.749 Sum_probs=14.7
Q ss_pred cchhHHHHHHHHHhhcc
Q 003821 486 QIGTALWFTFSSLFFAH 502 (793)
Q Consensus 486 ~~~~~~~~~~~~l~~~~ 502 (793)
++..++||+|++++..+
T Consensus 8 ~l~aa~wF~WGvllnsg 24 (27)
T 2nr1_A 8 TLSSAMWFSWGVLLNSG 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred ehhhhHHHhhHhheecc
Confidence 47889999999998765
No 190
>3k6v_A Solute-binding protein MA_0280; MODA, molybdate, periplasmic BIN protein, ABC transporter, transport protein, ligand, metal- protein; HET: CIT; 1.69A {Methanosarcina acetivorans} PDB: 3k6u_A* 3k6w_A 3k6x_A
Probab=67.80 E-value=51 Score=33.81 Aligned_cols=86 Identities=9% Similarity=0.002 Sum_probs=47.2
Q ss_pred cccccCCHHHHHHHhhcCceEEEEechhhHHHHH-----------------hccCCceEEeCc-----cccccceEEEec
Q 003821 581 NILKVDHEYKYITDFESNRIAAAFLELSYERAFL-----------------SQHCKEYTATIP-----TYRFGGFAFVFQ 638 (793)
Q Consensus 581 ~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~-----------------~~~c~~~~~~~~-----~~~~~~~~~~~~ 638 (793)
++..-.+..+.+..+.+|++|+.+.-...+...- ..+.....++.. ......|.+++.
T Consensus 222 k~v~~~~v~~~l~~v~~G~aDag~vy~S~a~~~~l~~v~lP~~~n~~~~~~~~~y~~v~v~~~~~~~~~~~Pi~y~~ai~ 301 (354)
T 3k6v_A 222 KIMLRSMEVELSSALETGEIDYLYIYRSVAEQHGFEYVALPPAIDLSSLEYADNYSKVQVEMVNGEVVTGSPIVYGVTIP 301 (354)
T ss_dssp TEEEESSHHHHHHHHHHTSCSEEEEEHHHHHHHTCEEEECCTTTSSCCGGGHHHHTTEEEECTTSCEEECCCCEEEEECC
T ss_pred eeEeCCCHHHHHHHHHcCCCCEEEEEhhhhhhcCCcEEeCChhhccccccccccccceeeeccccccccCCceeEeEEee
Confidence 3444567889999999999998776443332210 000011222210 111235889999
Q ss_pred CCCcChHHHHHHHHhhhccCchHHHHHHH
Q 003821 639 KGSPLAADFSEAILKLSENGELRSLEEKW 667 (793)
Q Consensus 639 k~spl~~~in~~i~~l~e~G~~~~~~~~w 667 (793)
|+++-.+.-..++.-|... .-+.+..++
T Consensus 302 k~a~~~~~A~~Fi~fL~S~-eaq~i~~~~ 329 (354)
T 3k6v_A 302 NNAENSELATEFVALLLGE-TGQQIFIEN 329 (354)
T ss_dssp TTCTTHHHHHHHHHHHHSH-HHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHHcCH-HHHHHHHHC
Confidence 9987666666666555533 234444443
No 191
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=65.42 E-value=14 Score=37.02 Aligned_cols=80 Identities=10% Similarity=0.116 Sum_probs=55.4
Q ss_pred eEEEEEEEc--CCCccccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcCCceEEEEeccChHHHH
Q 003821 77 RKVIIIYED--DATNADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRTESRVFIILQSSLAMGI 154 (793)
Q Consensus 77 ~~vaii~~d--d~~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivvl~~~~~~~~ 154 (793)
++|+++..+ +.|. ..+...+++.+++.|..+..... .. ........+..+.+.+.|.||+.....+...
T Consensus 3 ~~Igvi~~~~~~~~~--~~~~~gi~~~a~~~g~~~~~~~~--~~-----~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~ 73 (313)
T 3m9w_A 3 VKIGMAIDDLRLERW--QKDRDIFVKKAESLGAKVFVQSA--NG-----NEETQMSQIENMINRGVDVLVIIPYNGQVLS 73 (313)
T ss_dssp CEEEEEESCCSSSTT--HHHHHHHHHHHHHTSCEEEEEEC--TT-----CHHHHHHHHHHHHHTTCSEEEEECSSTTSCH
T ss_pred cEEEEEeCCCCChHH--HHHHHHHHHHHHHcCCEEEEECC--CC-----CHHHHHHHHHHHHHcCCCEEEEeCCChhhhH
Confidence 578888875 4566 78899999999999988664321 11 1234456677787888999888444444446
Q ss_pred HHHHHHHHcCC
Q 003821 155 HLFREAKEMGL 165 (793)
Q Consensus 155 ~~l~~a~~~g~ 165 (793)
..++++.+.|+
T Consensus 74 ~~~~~~~~~~i 84 (313)
T 3m9w_A 74 NVVKEAKQEGI 84 (313)
T ss_dssp HHHHHHHTTTC
T ss_pred HHHHHHHHCCC
Confidence 67888887775
No 192
>1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI, protein structure initiative; HET: APR; 1.60A {Escherichia coli} SCOP: e.22.1.2 PDB: 2bi4_A* 2bl4_A*
Probab=65.41 E-value=10 Score=39.69 Aligned_cols=90 Identities=11% Similarity=0.096 Sum_probs=60.4
Q ss_pred HHHHHHhhcCceEEEEEEEcCCCccccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcCCceEEEE
Q 003821 66 CTAALVGSYNWRKVIIIYEDDATNADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRTESRVFII 145 (793)
Q Consensus 66 ai~~ll~~~~w~~vaii~~dd~~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivv 145 (793)
.+.++++.+|.+++.||++..... .+..+.+.+.|++.|+++.....+.+.. +.+.+.+.+..+++.++|+||.
T Consensus 21 ~l~~~l~~~g~~~~livtd~~~~~--~g~~~~v~~~L~~~g~~~~~~~~~~~~p----~~~~v~~~~~~~~~~~~d~IIa 94 (386)
T 1rrm_A 21 ALTDEVKRRGYQKALIVTDKTLVQ--CGVVAKVTDKMDAAGLAWAIYDGVVPNP----TITVVKEGLGVFQNSGADYLIA 94 (386)
T ss_dssp GHHHHHHHHTCCEEEEECBHHHHH--TTHHHHHHHHHHHTTCEEEEECBCCSSC----BHHHHHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHcCCCEEEEEECcchhh--chHHHHHHHHHHHcCCeEEEECCccCCC----CHHHHHHHHHHHHhcCcCEEEE
Confidence 356677777889999998765432 3478899999999998764332333332 3356777778888889999987
Q ss_pred ecc-ChHHHHHHHHHHH
Q 003821 146 LQS-SLAMGIHLFREAK 161 (793)
Q Consensus 146 l~~-~~~~~~~~l~~a~ 161 (793)
+.+ +.-++..++....
T Consensus 95 vGGGsv~D~aK~iA~~~ 111 (386)
T 1rrm_A 95 IGGGSPQDTCKAIGIIS 111 (386)
T ss_dssp EESHHHHHHHHHHHHHH
T ss_pred eCChHHHHHHHHHHHHH
Confidence 433 3455666655544
No 193
>1us5_A Putative GLUR0 ligand binding core; receptor, membrane protein, glutamate receptor, L-glutamate; HET: GLU; 1.5A {Thermus thermophilus} SCOP: c.94.1.1 PDB: 1us4_A*
Probab=64.73 E-value=8.7 Score=38.71 Aligned_cols=59 Identities=20% Similarity=0.174 Sum_probs=38.1
Q ss_pred CCCChHHhhhCCCcccc-cCchHHHH----HHHhhcCCCCccc--cccCCHHHHHHHhhcCceEEEEec
Q 003821 545 NVTDIGWLKASNLNVGF-DGDSFVRN----YLENVLGFKPENI--LKVDHEYKYITDFESNRIAAAFLE 606 (793)
Q Consensus 545 ~i~sl~dL~~~~~~~g~-~~~~~~~~----~l~~~~~~~~~~~--~~~~~~~~~~~~l~~g~~~a~~~~ 606 (793)
++++++||. +.++++ ..++..+. +++ ..+.....+ ..+.+..+.+.++..|++|+.+..
T Consensus 122 ~i~sl~dL~--g~~i~~~~~gs~~~~~~~~~l~-~~G~~~~~v~~~~~~~~~~~~~al~~G~vda~~~~ 187 (314)
T 1us5_A 122 GIRTVADLK--GKRVVVGDVGSGTEQNARQILE-AYGLTFDDLGQAIRVSASQGIQLMQDKRADALFYT 187 (314)
T ss_dssp SCSSGGGGT--TSEEECCCTTCHHHHHHHHHHH-HTTCCGGGSSEEECCCHHHHHHHHHTTSCSEEEEE
T ss_pred CCCcHHHhC--CCEeecCCCCchHHHHHHHHHH-HcCCCHHHcCceecCCHHHHHHHHHcCCccEEEEc
Confidence 478999998 567766 34443332 233 233332223 245677889999999999998865
No 194
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=64.23 E-value=6 Score=39.76 Aligned_cols=52 Identities=17% Similarity=0.283 Sum_probs=46.6
Q ss_pred cchhHHHHHHHHHhhcc-cc-ccccchhhHHHHHHHHHHHHHHHHHHhhhheee
Q 003821 486 QIGTALWFTFSSLFFAH-RE-RIYSNLTRLVVVVWLFVVLILNSSYTASLSSML 537 (793)
Q Consensus 486 ~~~~~~~~~~~~l~~~~-~~-~~~s~s~R~l~~~w~~~~lil~~~Yta~L~s~L 537 (793)
++.+++|+++.++...| ++ .|.+..+|++.+++.++++.+.....+.+...|
T Consensus 115 ~~~~a~yf~~~t~tTvGYGdi~P~T~~gk~~~i~~~l~Gi~~~~~~~~~i~~~l 168 (309)
T 3um7_A 115 DLGSAFFFSGTIITTIGYGNVALRTDAGRLFCIFYALVGIPLFGILLAGVGDRL 168 (309)
T ss_dssp SHHHHHHHHHHHHTSCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhhhHhhheeeeecccCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37889999999999888 65 589999999999999999999999999988776
No 195
>2dgd_A 223AA long hypothetical arylmalonate decarboxylas; octamer, alpha/beta structure, lyase; 2.90A {Sulfolobus tokodaii}
Probab=63.79 E-value=23 Score=33.61 Aligned_cols=81 Identities=16% Similarity=-0.032 Sum_probs=52.4
Q ss_pred HHHHHHHHhhcCceEEEEEEEcCCCccccccHHHHHHHHHhcCceeeEEeecCCCCC---CCCChHHHHHHHHHhhcC--
Q 003821 64 ITCTAALVGSYNWRKVIIIYEDDATNADTGNLALLSEALQISNSEIEYRLVLPPISY---LTDPKQFLQEKLLKLLRT-- 138 (793)
Q Consensus 64 ~~ai~~ll~~~~w~~vaii~~dd~~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~---~~~~~~~~~~~l~~l~~~-- 138 (793)
..++++.++..|-++|+|+. .|+ ....+.+++.+++.|+++........... .......+.+.++++.+.
T Consensus 96 ~~a~~~a~~~~g~~rvgvlt---~~~--~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 170 (223)
T 2dgd_A 96 EESVYELLKKLNVRKLWIGT---PYI--KERTLEEVEWWRNKGFEIVGYDGLGKIRGIDISNTPIFTIYRLVKRHLNEVL 170 (223)
T ss_dssp HHHHHHHHHHTTCCEEEEEE---SSC--HHHHHHHHHHHHTTTCEEEEEEECCCCSHHHHHTCCHHHHHHHHHTTHHHHT
T ss_pred HHHHHHHHHHcCCCeEEEEe---CCc--hHHHHHHHHHHHhCCcEEecccCCCCCCcchhhccCHHHHHHHHHHHhcccC
Confidence 67777777778889999995 344 55566788899999998765543332110 011223466666666656
Q ss_pred CceEEEEeccCh
Q 003821 139 ESRVFIILQSSL 150 (793)
Q Consensus 139 ~~~vivvl~~~~ 150 (793)
++++||+ .|..
T Consensus 171 gadaIvL-gCT~ 181 (223)
T 2dgd_A 171 KADAVYI-ACTA 181 (223)
T ss_dssp TSSEEEE-CCTT
T ss_pred CCCEEEE-eCCc
Confidence 7888887 6644
No 196
>4ab5_A Transcriptional regulator, LYSR family; transcription factors; 2.51A {Neisseria meningitidis serogroup B} PDB: 4ab6_A
Probab=62.79 E-value=71 Score=29.18 Aligned_cols=105 Identities=8% Similarity=-0.120 Sum_probs=56.4
Q ss_pred CChHHhhhCCCcccc-cCch----HHHHHHHhhcCCCCccccccCCHHHHHHHhhcCceEEEEechhhHHHHHhccCCce
Q 003821 547 TDIGWLKASNLNVGF-DGDS----FVRNYLENVLGFKPENILKVDHEYKYITDFESNRIAAAFLELSYERAFLSQHCKEY 621 (793)
Q Consensus 547 ~sl~dL~~~~~~~g~-~~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~c~~~ 621 (793)
-+++||. +.++.. ..++ ....++... +.... ....++.......+.+|..-+++.+.....+........+
T Consensus 98 i~~~dL~--~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~v~~g~gi~~~p~~~~~~~~~~~~l~~~ 173 (222)
T 4ab5_A 98 WTAEDFI--GETLITYPVPDEMLDLPKKILIPK-NINPP-RRHSELTIAIIQLVASRRGIAALPYWTVMPYLEKGYVVHR 173 (222)
T ss_dssp ECGGGGS--SSCEEECSSCGGGCHHHHHTTGGG-TCCCC-EEECSCHHHHHHHHHTTSCBEEEEHHHHHHHHHTTSCEEE
T ss_pred cCHHHHc--CCCEEecCCCcHHHHHHHHHHHHc-CCCCC-eEecCCHHHHHHHHHcCCeEEEcchHHhHHHhhcCcEEEE
Confidence 3678887 444433 2222 223333332 23333 5567888888999999976666555433333322222212
Q ss_pred EEeCccccccceEEEecCCCcChHHHHHHHHhhhc
Q 003821 622 TATIPTYRFGGFAFVFQKGSPLAADFSEAILKLSE 656 (793)
Q Consensus 622 ~~~~~~~~~~~~~~~~~k~spl~~~in~~i~~l~e 656 (793)
. +........++++.+++.+....+...+..+.+
T Consensus 174 ~-~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~l~~ 207 (222)
T 4ab5_A 174 Q-ITADGLQSKLYAAIRTEDTDKSYLNNFCQIIRE 207 (222)
T ss_dssp E-ESTTCCEEEEEEEEEGGGTTCHHHHHHHHHHHH
T ss_pred e-cCCCccceEEEEEEeCCcccCHHHHHHHHHHHh
Confidence 2 232233456788888887766666666655544
No 197
>3r26_A Molybdate-binding periplasmic protein; protein binding; 1.70A {Escherichia coli} SCOP: c.94.1.1 PDB: 3axf_A 1amf_A 1wod_A
Probab=62.34 E-value=25 Score=33.68 Aligned_cols=113 Identities=10% Similarity=0.026 Sum_probs=58.0
Q ss_pred CCChHHhhhCCCccccc------CchHHHHHHHhhcCC--CCccccccCCHHHHHHHhhcCceEEEEechhhHHHHHhcc
Q 003821 546 VTDIGWLKASNLNVGFD------GDSFVRNYLENVLGF--KPENILKVDHEYKYITDFESNRIAAAFLELSYERAFLSQH 617 (793)
Q Consensus 546 i~sl~dL~~~~~~~g~~------~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~ 617 (793)
+.++.||.. +.++++. .|.+....+++.-.. -..++....+..+....+.+|++|+.+.-...+.. ..
T Consensus 107 ~~~l~~l~~-~~~iai~~p~~~p~G~~a~~~l~~~g~~~~l~~~~~~~~~~~~~~~~v~~Ge~d~gi~~~s~a~~--~~- 182 (237)
T 3r26_A 107 KTNWTSLLN-GGRLAVGDPEHVPAGIYAKEALQKLGAWDTLSPKLAPAEDVRGALALVERNEAPLGIVYGSDAVA--SK- 182 (237)
T ss_dssp TCCHHHHHT-TCCEEEECTTTCHHHHHHHHHHHHTTCHHHHGGGEEEESSHHHHHHHHHTTSSSEEEEEHHHHHH--CS-
T ss_pred hHhHHHhcC-CCeEEEeCCCCCChHHHHHHHHHHcCCHHHhhhcEEecCCHHHHHHHHHcCCCCEEEEEeccccc--CC-
Confidence 345666543 4566652 233444455442110 01234445677888899999999988764433221 11
Q ss_pred CCceEEe---Cc-cccccceEEEecCCCcChHHHHHHHHhhhccCchHHHHHH
Q 003821 618 CKEYTAT---IP-TYRFGGFAFVFQKGSPLAADFSEAILKLSENGELRSLEEK 666 (793)
Q Consensus 618 c~~~~~~---~~-~~~~~~~~~~~~k~spl~~~in~~i~~l~e~G~~~~~~~~ 666 (793)
.+.++ ++ ......+++++.|+++- +.-..++.-|... .-+.+..+
T Consensus 183 --~~~~v~~~P~~~~~~~~~~~ai~k~~~~-~~A~~Fi~fl~S~-eaq~i~~~ 231 (237)
T 3r26_A 183 --GVKVVATFPEDSHKKVEYPVAVVEGHNN-ATVKAFYDYLKGP-QAAEIFKR 231 (237)
T ss_dssp --SEEEEEECCGGGSCCEEEEEEEBTTCCS-HHHHHHHHHHTSH-HHHHHHHH
T ss_pred --CCeEEEECCcccCCeeeeeEEEEcCCCC-HHHHHHHHHHcCH-HHHHHHHH
Confidence 13332 22 22233567888899875 4444444444432 23444433
No 198
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=62.30 E-value=12 Score=37.38 Aligned_cols=81 Identities=16% Similarity=0.051 Sum_probs=53.9
Q ss_pred eEEEEEEEcC--CCccccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcCCceEEEEeccChHHHH
Q 003821 77 RKVIIIYEDD--ATNADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRTESRVFIILQSSLAMGI 154 (793)
Q Consensus 77 ~~vaii~~dd--~~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivvl~~~~~~~~ 154 (793)
++|++|..+. .|. ......+++++++.|..+.... .... ........+..+.+.+.|.||+.....+...
T Consensus 5 ~~I~~i~~~~~~~~~--~~~~~gi~~~a~~~g~~~~~~~--~~~~----~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~ 76 (305)
T 3g1w_A 5 ETYMMITFQSGMDYW--KRCLKGFEDAAQALNVTVEYRG--AAQY----DIQEQITVLEQAIAKNPAGIAISAIDPVELT 76 (305)
T ss_dssp CEEEEEESSTTSTHH--HHHHHHHHHHHHHHTCEEEEEE--CSSS----CHHHHHHHHHHHHHHCCSEEEECCSSTTTTH
T ss_pred ceEEEEEccCCChHH--HHHHHHHHHHHHHcCCEEEEeC--CCcC----CHHHHHHHHHHHHHhCCCEEEEcCCCHHHHH
Confidence 5788887654 354 7788889999999998875421 1111 1234556677777778999888333444456
Q ss_pred HHHHHHHHcCC
Q 003821 155 HLFREAKEMGL 165 (793)
Q Consensus 155 ~~l~~a~~~g~ 165 (793)
..++++.+.|+
T Consensus 77 ~~~~~~~~~~i 87 (305)
T 3g1w_A 77 DTINKAVDAGI 87 (305)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHCCC
Confidence 67888888776
No 199
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=61.44 E-value=15 Score=36.81 Aligned_cols=53 Identities=15% Similarity=0.222 Sum_probs=41.9
Q ss_pred cchhHHHHHHHHHhhcc-ccc-cccchhh------HHHHHHHHHHHHHHHHHHhhhheeee
Q 003821 486 QIGTALWFTFSSLFFAH-RER-IYSNLTR------LVVVVWLFVVLILNSSYTASLSSMLT 538 (793)
Q Consensus 486 ~~~~~~~~~~~~l~~~~-~~~-~~s~s~R------~l~~~w~~~~lil~~~Yta~L~s~Lt 538 (793)
++.+++|+++.++.-.| ++. |.+..+| ++.++|.++++.+.+.-.+.+...+.
T Consensus 224 ~~~da~y~~~vTltTvGyGd~~p~t~~g~~~~~y~~~~~~~il~Gl~~~a~~~~~i~~~~~ 284 (309)
T 3um7_A 224 SKLEAIYFVIVTLTTVGFGDYVAGADPRQDSPAYQPLVWFWILLGLAYFASVLTTIGNWLR 284 (309)
T ss_dssp CHHHHHHHHHHHHTTCCCSSCCTTCCTTCCCSTHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHhheeccccCCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37899999999999888 654 6666665 59999999999888887777666553
No 200
>3uhj_A Probable glycerol dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.34A {Sinorhizobium meliloti}
Probab=61.21 E-value=15 Score=38.36 Aligned_cols=70 Identities=6% Similarity=-0.012 Sum_probs=45.9
Q ss_pred HHHHHHhhcCceEEEEEEEcCCCccccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcCCceEEEE
Q 003821 66 CTAALVGSYNWRKVIIIYEDDATNADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRTESRVFII 145 (793)
Q Consensus 66 ai~~ll~~~~w~~vaii~~dd~~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivv 145 (793)
.+.++++.+| +|+.||++...+ ....+.+.+.|++ |+++. ...+++.. +.+.+.+.+..+++.++|+||-
T Consensus 43 ~l~~~l~~~g-~r~liVtd~~~~---~~~~~~v~~~L~~-g~~~~-~~~~~~~p----~~~~v~~~~~~~~~~~~d~IIa 112 (387)
T 3uhj_A 43 KLAAYLAPLG-KRALVLIDRVLF---DALSERIGKSCGD-SLDIR-FERFGGEC----CTSEIERVRKVAIEHGSDILVG 112 (387)
T ss_dssp TTHHHHGGGC-SEEEEEECTTTH---HHHHHHC-------CCEEE-EEECCSSC----SHHHHHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHcC-CEEEEEECchHH---HHHHHHHHHHHHc-CCCeE-EEEcCCCC----CHHHHHHHHHHHhhcCCCEEEE
Confidence 4567788889 999999887765 3367888888988 98873 33444433 3466777777788889999887
No 201
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=60.37 E-value=24 Score=34.69 Aligned_cols=80 Identities=8% Similarity=-0.019 Sum_probs=55.4
Q ss_pred eEEEEEEEcCC--CccccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcCCceEEEEeccChHHHH
Q 003821 77 RKVIIIYEDDA--TNADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRTESRVFIILQSSLAMGI 154 (793)
Q Consensus 77 ~~vaii~~dd~--~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivvl~~~~~~~~ 154 (793)
++|+++..+.. |. ......+++.+++.|.++.... .. . ........++.+.+.+.|.||+.....+...
T Consensus 6 ~~Ig~i~~~~~~~~~--~~~~~gi~~~a~~~g~~~~~~~-~~-~-----~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~ 76 (291)
T 3l49_A 6 KTIGITAIGTDHDWD--LKAYQAQIAEIERLGGTAIALD-AG-R-----NDQTQVSQIQTLIAQKPDAIIEQLGNLDVLN 76 (291)
T ss_dssp CEEEEEESCCSSHHH--HHHHHHHHHHHHHTTCEEEEEE-CT-T-----CHHHHHHHHHHHHHHCCSEEEEESSCHHHHH
T ss_pred cEEEEEeCCCCChHH--HHHHHHHHHHHHHcCCEEEEEc-CC-C-----CHHHHHHHHHHHHHcCCCEEEEeCCChhhhH
Confidence 57888887533 54 6778899999999998875441 11 1 1233456677777788999888444445667
Q ss_pred HHHHHHHHcCC
Q 003821 155 HLFREAKEMGL 165 (793)
Q Consensus 155 ~~l~~a~~~g~ 165 (793)
..++++.+.|+
T Consensus 77 ~~~~~~~~~~i 87 (291)
T 3l49_A 77 PWLQKINDAGI 87 (291)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHCCC
Confidence 78888888776
No 202
>2xxp_A CPS2A; replication, peptidoglycan, LCP, LYTR; HET: DSL PEG; 1.69A {Streptococcus pneumoniae} PDB: 3tep_A* 3tfl_A* 2xxq_A* 3tel_A* 4de8_A*
Probab=60.09 E-value=7.3 Score=40.93 Aligned_cols=69 Identities=9% Similarity=0.018 Sum_probs=49.3
Q ss_pred CCCCCCChHHhhhCCCcccccCchHHHHHHH------hhcCCCCccccccCCHHHHHHHhhcCceEEEEechhhHHHHHh
Q 003821 542 LKPNVTDIGWLKASNLNVGFDGDSFVRNYLE------NVLGFKPENILKVDHEYKYITDFESNRIAAAFLELSYERAFLS 615 (793)
Q Consensus 542 ~~~~i~sl~dL~~~~~~~g~~~~~~~~~~l~------~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~ 615 (793)
-.++|++++||. | +|+..+...+.+.. +..+. ..+++.|.+..+++.+|.+|++||++.+..+...+..
T Consensus 24 kds~i~sl~DLk--g--vgv~~~~~~~~~~~~~~~i~~~~g~-~~~~~~y~~~~~a~~aL~nG~vDAiv~~~~~~~~le~ 98 (398)
T 2xxp_A 24 ADSEIENVTQLT--S--VTAPTGTDNENIQKLLADIKSSQNT-DLTVNQSSSYLAAYKSLIAGETKAIVLNSVFENIIEL 98 (398)
T ss_dssp TTCSCCSGGGCS--E--EEECTTTSHHHHHHHHHHHHHHSCC-CCEEEECSSHHHHHHHHHTTSCSCEEEEHHHHHHHHH
T ss_pred CCCCcCCHHHhc--C--eeeECCCCHHHHHHHHHHHHHhhCC-cceEEecCCHHHHHHHHHcCCCCEEEEchHHHHHHHh
Confidence 336899999998 4 87765543333322 22121 1457789999999999999999999998888766543
No 203
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Probab=59.78 E-value=23 Score=35.99 Aligned_cols=59 Identities=10% Similarity=0.068 Sum_probs=50.3
Q ss_pred ccchhHHHHHHHHHhhcc-ccc-cc--cchhhHHHHHHHHHHHHHHHHHHhhhheeeeeccCC
Q 003821 485 IQIGTALWFTFSSLFFAH-RER-IY--SNLTRLVVVVWLFVVLILNSSYTASLSSMLTVQRLK 543 (793)
Q Consensus 485 ~~~~~~~~~~~~~l~~~~-~~~-~~--s~s~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~ 543 (793)
.++.+++|+++.++.-.| ++. |. +..+|++..+=.+.++++.+.-++-+.+-++.++..
T Consensus 90 ~sf~~af~fSv~T~TTvGYGd~~p~~~~~~g~~l~~~~~l~G~~l~a~~~giv~ak~srp~~r 152 (340)
T 3sya_A 90 NGFVSAFLFSIETETTIGYGYRVITDKCPEGIILLLIQSVLGSIVNAFMVGCMFVKISQPKKR 152 (340)
T ss_dssp CSTTHHHHHHHHHHSCCCCSSSCBCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGG
T ss_pred cCHHHHHhhhheeeeeecCCCccCcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhc
Confidence 468899999999999888 554 53 678999999999999999999999999988776654
No 204
>3gzg_A Molybdate-binding periplasmic protein; permease; molybdate complex, mutant K127S, metal binding protein; 1.55A {Xanthomonas axonopodis PV} PDB: 2h5y_A
Probab=59.64 E-value=30 Score=33.63 Aligned_cols=92 Identities=9% Similarity=-0.020 Sum_probs=48.3
Q ss_pred CCCC--hHHhhhCCCcccccC------chHHHHHHHhhcCC--CCccccccCCHHHHHHHhhcCceEEEEechhhHHHHH
Q 003821 545 NVTD--IGWLKASNLNVGFDG------DSFVRNYLENVLGF--KPENILKVDHEYKYITDFESNRIAAAFLELSYERAFL 614 (793)
Q Consensus 545 ~i~s--l~dL~~~~~~~g~~~------~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~ 614 (793)
.|++ +.|+...+.++++.+ |.+....+.+.-.. -..++....+..+....+.+|++|+.+.-...+. .
T Consensus 119 ~i~~~dl~~l~~~~~~iai~dP~~~p~G~~a~~~l~~~g~~~~l~~~~v~~~~~~~~~~~v~~Gead~giv~~s~a~--~ 196 (253)
T 3gzg_A 119 PRAPGAIAKALGENGRLAVGQTASVPAGSYAAAALRKLGQWDSVSNRLAESESVRAALMLVSRGEAPLGIVYGSDAR--A 196 (253)
T ss_dssp TTSTTHHHHHTTTTCCEEEECTTTSHHHHHHHHHHHHTTCHHHHTTSEEEESSHHHHHHHHHTTSSSEEEEEHHHHH--H
T ss_pred CCCHHHHHHhhcCCCEEEEeCCCCCchHHHHHHHHHHcCcHHHHhhceeecCCHHHHHHHHHcCCCCEEEEEhhccc--c
Confidence 3666 444432346776622 23344444442110 1124444577788889999999998876443332 1
Q ss_pred hccCCceEEe---Cc-cccccceEEEecCCC
Q 003821 615 SQHCKEYTAT---IP-TYRFGGFAFVFQKGS 641 (793)
Q Consensus 615 ~~~c~~~~~~---~~-~~~~~~~~~~~~k~s 641 (793)
. +.+.++ ++ ......|.+++.|++
T Consensus 197 ~---~~v~~v~~~P~~~~~~i~~~~ai~k~~ 224 (253)
T 3gzg_A 197 D---AKVRVVATFPDDSHDAIVYPVAALKNS 224 (253)
T ss_dssp C---TTEEEEEECCGGGSCCEEEEEEECTTC
T ss_pred C---CCceEEEECCcccCceeEEEEEEECCC
Confidence 1 123333 32 222345678888875
No 205
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A*
Probab=58.79 E-value=1.1e+02 Score=31.40 Aligned_cols=101 Identities=9% Similarity=0.041 Sum_probs=64.0
Q ss_pred CeEEEecCChHHHHHHHHHHHhhcCceEEEEEEEcCCCccccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHH
Q 003821 51 PFLVRMANSSAEQITCTAALVGSYNWRKVIIIYEDDATNADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQE 130 (793)
Q Consensus 51 ~~~~r~~p~~~~~~~ai~~ll~~~~w~~vaii~~dd~~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~ 130 (793)
|+-+...+.. ...+.++++.+| +++.||++..... ..+..+.+.+.|++.|+++.....+.+.. +.+.+.+
T Consensus 19 p~~i~~G~g~---~~~l~~~l~~~g-~~~liVtd~~~~~-~~g~~~~v~~~L~~~g~~~~~~~~~~~~p----~~~~v~~ 89 (371)
T 1o2d_A 19 PTDVFFGEKI---LEKRGNIIDLLG-KRALVVTGKSSSK-KNGSLDDLKKLLDETEISYEIFDEVEENP----SFDNVMK 89 (371)
T ss_dssp CCEEEESTTH---HHHHGGGGGGTC-SEEEEEEESSGGG-TSSHHHHHHHHHHHTTCEEEEEEEECSSC----BHHHHHH
T ss_pred CceEEECcCH---HHHHHHHHHHcC-CEEEEEECchHHh-hccHHHHHHHHHHHcCCeEEEeCCccCCC----CHHHHHH
Confidence 3434444442 234566777788 9999999875432 02368999999999998764333344433 3356777
Q ss_pred HHHHhhcCCceEEEEecc-ChHHHHHHHHHH
Q 003821 131 KLLKLLRTESRVFIILQS-SLAMGIHLFREA 160 (793)
Q Consensus 131 ~l~~l~~~~~~vivvl~~-~~~~~~~~l~~a 160 (793)
.+..+++.++|+||.+.+ +.-++..++...
T Consensus 90 ~~~~~~~~~~d~IIavGGGsv~D~AK~iA~~ 120 (371)
T 1o2d_A 90 AVERYRNDSFDFVVGLGGGSPMDFAKAVAVL 120 (371)
T ss_dssp HHHHHTTSCCSEEEEEESHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCEEEEeCChHHHHHHHHHHHH
Confidence 888888889999987333 234555555443
No 206
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=58.03 E-value=26 Score=34.79 Aligned_cols=79 Identities=11% Similarity=0.059 Sum_probs=55.9
Q ss_pred eEEEEEEEcC--CCccccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcCCceEEEEeccChHHHH
Q 003821 77 RKVIIIYEDD--ATNADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRTESRVFIILQSSLAMGI 154 (793)
Q Consensus 77 ~~vaii~~dd--~~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivvl~~~~~~~~ 154 (793)
.+|+++..+. .|. ....+.+++++++.|.++..... .+ .....+.+..+.+.+.|.||+.....+...
T Consensus 3 ~~Ig~i~~~~~~~~~--~~~~~gi~~~a~~~g~~~~~~~~---~~-----~~~~~~~i~~l~~~~vdgiii~~~~~~~~~ 72 (306)
T 8abp_A 3 LKLGFLVKQPEEPWF--QTEWKFADKAGKDLGFEVIKIAV---PD-----GEKTLNAIDSLAASGAKGFVICTPDPKLGS 72 (306)
T ss_dssp EEEEEEESCTTSHHH--HHHHHHHHHHHHHHTEEEEEEEC---CS-----HHHHHHHHHHHHHTTCCEEEEECSCGGGHH
T ss_pred eEEEEEeCCCCchHH--HHHHHHHHHHHHHcCCEEEEeCC---CC-----HHHHHHHHHHHHHcCCCEEEEeCCCchhhH
Confidence 3688887764 355 77888999999999988753321 12 244566778888888999988444555666
Q ss_pred HHHHHHHHcCC
Q 003821 155 HLFREAKEMGL 165 (793)
Q Consensus 155 ~~l~~a~~~g~ 165 (793)
..++++.+.|+
T Consensus 73 ~~~~~~~~~~i 83 (306)
T 8abp_A 73 AIVAKARGYDM 83 (306)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHCCC
Confidence 77888888776
No 207
>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP: e.22.1.2
Probab=57.61 E-value=23 Score=37.39 Aligned_cols=90 Identities=11% Similarity=0.085 Sum_probs=57.8
Q ss_pred HHHHHHhhcCceEEEEEEEcCCCccccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcCCceEEEE
Q 003821 66 CTAALVGSYNWRKVIIIYEDDATNADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRTESRVFII 145 (793)
Q Consensus 66 ai~~ll~~~~w~~vaii~~dd~~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivv 145 (793)
.+.+.++.+|.+++.||+++...- ..+..+.+.+.|++.|+++...-.+.+.. +.+.+.+.+..+++.++|+||.
T Consensus 33 ~l~~~l~~~g~~r~liVtd~~~~~-~~g~~~~v~~~L~~~g~~~~~f~~v~~~p----~~~~v~~~~~~~~~~~~D~IIa 107 (407)
T 1vlj_A 33 KIGEEIKNAGIRKVLFLYGGGSIK-KNGVYDQVVDSLKKHGIEWVEVSGVKPNP----VLSKVHEAVEVAKKEKVEAVLG 107 (407)
T ss_dssp GHHHHHHHTTCCEEEEEECSSHHH-HSSHHHHHHHHHHHTTCEEEEECCCCSSC----BHHHHHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHcCCCeEEEEECchHHh-hccHHHHHHHHHHHcCCeEEEecCccCCC----CHHHHHHHHHHHHhcCCCEEEE
Confidence 456677778889999998754321 02368889999999898764221222222 3356777778888889999987
Q ss_pred ecc-ChHHHHHHHHHH
Q 003821 146 LQS-SLAMGIHLFREA 160 (793)
Q Consensus 146 l~~-~~~~~~~~l~~a 160 (793)
+.+ +.-++.+++...
T Consensus 108 vGGGsviD~AK~iA~~ 123 (407)
T 1vlj_A 108 VGGGSVVDSAKAVAAG 123 (407)
T ss_dssp EESHHHHHHHHHHHHH
T ss_pred eCChhHHHHHHHHHHH
Confidence 333 234555555443
No 208
>1atg_A MODA, periplasmic molybdate-binding protein; tungstate, ABC transporter; 1.20A {Azotobacter vinelandii} SCOP: c.94.1.1
Probab=57.09 E-value=34 Score=31.90 Aligned_cols=73 Identities=10% Similarity=-0.050 Sum_probs=39.2
Q ss_pred cccCCHHHHHHHhhcCceEEEEechhhHHHHHhccC--CceEEeCcc-ccccceEEEecCCCcChHHHHHHHHhhhcc
Q 003821 583 LKVDHEYKYITDFESNRIAAAFLELSYERAFLSQHC--KEYTATIPT-YRFGGFAFVFQKGSPLAADFSEAILKLSEN 657 (793)
Q Consensus 583 ~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~c--~~~~~~~~~-~~~~~~~~~~~k~spl~~~in~~i~~l~e~ 657 (793)
....+..+..+.+.+|..++.+........ .... .....+... .....+.+++.|+++..+....++.-+.+.
T Consensus 141 ~~~~~~~~~~~~v~~G~~~i~~~~~~~~~~--~~~~~~~~~~~~p~~~~~~~~~~~~i~~~~~~~~~a~~fi~~l~s~ 216 (231)
T 1atg_A 141 VEANSVGQAHSQTASGAADLGFVALAQIIQ--AAAKIPGSHWFPPANYYEPIVQQAVITKSTAEKANAEQFMSWMKGP 216 (231)
T ss_dssp EEESSHHHHHHHHHTTSSSEEEEEGGGTCC--TTSCCSSEEECCCGGGSCCCEEEEEEBTTCSCHHHHHHHHHHTTSH
T ss_pred EecCCHHHHHHHHHcCCCCEEEEEHHHhhh--ccccccCeEEEeCcccCccceEeEEEecCCCChHHHHHHHHHHcCH
Confidence 345677788899999986555543322211 1111 112222221 112345677889888777766666655543
No 209
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=56.87 E-value=4 Score=38.94 Aligned_cols=35 Identities=17% Similarity=0.166 Sum_probs=31.1
Q ss_pred cccceEEEEcCCChhhHHHHHHhccCCCccEEeee
Q 003821 3 KEKEVKVIVGMETWGAATMVADIGSRAQVPVLSFA 37 (793)
Q Consensus 3 ~~~~V~aiiGp~~s~~~~~va~i~~~~~iP~Is~~ 37 (793)
.+.+|+.|+||.+|+=......+++.+++|+||.+
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hIstG 61 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHLSSG 61 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHHCCEEECHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHCCceEcHH
Confidence 45678999999999999999999999999999854
No 210
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=55.76 E-value=26 Score=34.71 Aligned_cols=81 Identities=12% Similarity=0.049 Sum_probs=49.9
Q ss_pred eEEEEEEEc--CCCccccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcCCceEEEEeccChHHHH
Q 003821 77 RKVIIIYED--DATNADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRTESRVFIILQSSLAMGI 154 (793)
Q Consensus 77 ~~vaii~~d--d~~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivvl~~~~~~~~ 154 (793)
++|+++..+ +.|. ....+.+++++++.|.++... ..... ......+.+..+.+.+.+.+|+.....+...
T Consensus 5 ~~Ig~i~~~~~~~~~--~~~~~g~~~~~~~~g~~~~~~--~~~~~----~~~~~~~~~~~l~~~~vdgiii~~~~~~~~~ 76 (303)
T 3d02_A 5 KTVVNISKVDGMPWF--NRMGEGVVQAGKEFNLNASQV--GPSST----DAPQQVKIIEDLIARKVDAITIVPNDANVLE 76 (303)
T ss_dssp EEEEEECSCSSCHHH--HHHHHHHHHHHHHTTEEEEEE--CCSSS----CHHHHHHHHHHHHHTTCSEEEECCSCHHHHH
T ss_pred eEEEEEeccCCChHH--HHHHHHHHHHHHHcCCEEEEE--CCCCC----CHHHHHHHHHHHHHcCCCEEEEecCChHHHH
Confidence 467888654 3355 777888889999999775422 11111 1233455677777778898887233334444
Q ss_pred HHHHHHHHcCC
Q 003821 155 HLFREAKEMGL 165 (793)
Q Consensus 155 ~~l~~a~~~g~ 165 (793)
..++.+.+.|+
T Consensus 77 ~~~~~~~~~~i 87 (303)
T 3d02_A 77 PVFKKARDAGI 87 (303)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHCCC
Confidence 56777777664
No 211
>3ho7_A OXYR; beta-alpha-barrels, DNA-binding, transcription, transcriptio regulation; 1.58A {Porphyromonas gingivalis}
Probab=55.25 E-value=73 Score=29.41 Aligned_cols=77 Identities=10% Similarity=-0.079 Sum_probs=45.6
Q ss_pred CccccccCCHHHHHHHhhcCceEEEEechhhHHHHHhccCCceEEeCccccccceEEEecCCCcChHHHHHHHHhhhc
Q 003821 579 PENILKVDHEYKYITDFESNRIAAAFLELSYERAFLSQHCKEYTATIPTYRFGGFAFVFQKGSPLAADFSEAILKLSE 656 (793)
Q Consensus 579 ~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~k~spl~~~in~~i~~l~e 656 (793)
.......++.......+.+|..-+++.+.....+....... ..-+........++++.+++.+....+...+..+.+
T Consensus 136 ~~~~~~~~~~~~~~~~v~~g~gi~~~p~~~~~~~~~~~~l~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~ 212 (232)
T 3ho7_A 136 RQTAYSGGSMEAFMRLVESGQGITFIPQLTVEQLSPSQKEL-VRPFGMPRPVREVRLAVRQDYSRRKLREQLIGLLRS 212 (232)
T ss_dssp SSEEEESCCHHHHHHHHHTTCCEEEEEGGGGGGSCHHHHTT-EECBCSSEEEEEEEEEEETTCSCHHHHHHHHHHHHT
T ss_pred CceeEEeCCHHHHHHHHHcCCcEEEecHHHhhhhcccCceE-EEEccCCCceEEEEEEEeCCCccCHHHHHHHHHHHH
Confidence 33445678888899999999866666554333221222121 111222233456788899988777777666666554
No 212
>2de3_A Dibenzothiophene desulfurization enzyme B; alpha-beta, hydrolase; HET: OBP; 1.60A {Rhodococcus SP} PDB: 2de4_A* 2de2_A
Probab=55.19 E-value=12 Score=38.74 Aligned_cols=25 Identities=12% Similarity=0.151 Sum_probs=19.5
Q ss_pred HHHHhhcCceEEEEechhhHHHHHh
Q 003821 591 YITDFESNRIAAAFLELSYERAFLS 615 (793)
Q Consensus 591 ~~~~l~~g~~~a~~~~~~~~~~~~~ 615 (793)
...+|.+|++||++...++......
T Consensus 210 ~~~aL~~G~vDA~~~~~p~~~~~~~ 234 (365)
T 2de3_A 210 QAAVLASGDVDALYSWLPWAGELQA 234 (365)
T ss_dssp HHHHHHSSSCSEEEEEHHHHHHHHH
T ss_pred HHHHHhCCCcCEEEEcchhHHHHHh
Confidence 6788999999999987776654433
No 213
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=55.18 E-value=19 Score=35.84 Aligned_cols=59 Identities=7% Similarity=0.059 Sum_probs=42.2
Q ss_pred cccchhHHHHHHHHHhhcc-c-cc--ccc----chhhHHHHHHHHHHHHHHHHHHhhhheeeeeccC
Q 003821 484 NIQIGTALWFTFSSLFFAH-R-ER--IYS----NLTRLVVVVWLFVVLILNSSYTASLSSMLTVQRL 542 (793)
Q Consensus 484 ~~~~~~~~~~~~~~l~~~~-~-~~--~~s----~s~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~ 542 (793)
..++.+++|..+.++...| + +. |.. .+.+++....++.++++.+.++|-+.+.+.....
T Consensus 178 F~s~~~a~~~~~~~~T~~g~~~di~~p~~~~~~~~~~~f~~~~~i~~~~~lnl~~aii~~~f~~~~~ 244 (285)
T 3rvy_A 178 FGTLGESFYTLFQVMTLESWSMGIVRPLMEVYPYAWVFFIPFIFVVTFVMINLVVAICVDAMAILNQ 244 (285)
T ss_dssp HSSHHHHHHHHHHHHTTTTCCCCCHHHHHTTCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCChHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3468899999999999888 5 43 422 2346777777777899999999999998865433
No 214
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=54.41 E-value=74 Score=24.70 Aligned_cols=105 Identities=18% Similarity=0.183 Sum_probs=69.8
Q ss_pred CChhhHHHHHHhccCCCccEEeeeCCCCCCCCC-------CCCCCeEEEecCChHHHHHHHHHHHhhcCceEEEEEEEcC
Q 003821 14 ETWGAATMVADIGSRAQVPVLSFAEPAIAPPLT-------STRWPFLVRMANSSAEQITCTAALVGSYNWRKVIIIYEDD 86 (793)
Q Consensus 14 ~~s~~~~~va~i~~~~~iP~Is~~~~~~~~~l~-------~~~~~~~~r~~p~~~~~~~ai~~ll~~~~w~~vaii~~dd 86 (793)
..-++-.-...+....+.-+=+..+. ..+. ..-...+.-+.-.|...++-...+++..|-+-..+||+.|
T Consensus 10 tdeetlrkfkdiikkngfkvrtvrsp---qelkdsieelvkkynativvvvvddkewaekairfvkslgaqvliiiydqd 86 (134)
T 2l69_A 10 TDEETLRKFKDIIKKNGFKVRTVRSP---QELKDSIEELVKKYNATIVVVVVDDKEWAEKAIRFVKSLGAQVLIIIYDQD 86 (134)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEEECSH---HHHHHHHHHHTTCCCCEEEEEECSSHHHHHHHHHHHHHHCCCCEEEEECSC
T ss_pred CCHHHHHHHHHHHHhcCceEEEecCH---HHHHHHHHHHHHHhCCeEEEEEEccHHHHHHHHHHHHhcCCeEEEEEEeCc
Confidence 34445555666777777665554432 2221 2223455667788889999999999999999999999887
Q ss_pred CCccccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhh
Q 003821 87 ATNADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLL 136 (793)
Q Consensus 87 ~~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~ 136 (793)
. .-++.|....+..|.++... .. .+||...|.++.
T Consensus 87 q-----nrleefsrevrrrgfevrtv---ts-------pddfkkslerli 121 (134)
T 2l69_A 87 Q-----NRLEEFSREVRRRGFEVRTV---TS-------PDDFKKSLERLI 121 (134)
T ss_dssp H-----HHHHHHHHHHHHTTCCEEEE---SS-------HHHHHHHHHHHH
T ss_pred h-----hHHHHHHHHHHhcCceEEEe---cC-------hHHHHHHHHHHH
Confidence 4 44788888888899886533 11 156777676654
No 215
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=54.01 E-value=29 Score=34.15 Aligned_cols=81 Identities=12% Similarity=0.049 Sum_probs=55.1
Q ss_pred ceEEEEEEEcCC--CccccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcCCceEEEEeccChHHH
Q 003821 76 WRKVIIIYEDDA--TNADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRTESRVFIILQSSLAMG 153 (793)
Q Consensus 76 w~~vaii~~dd~--~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivvl~~~~~~~ 153 (793)
=++|+++..+.. |. ......+++++++.|..+..... . . ........+..+.+.+.|.||+.....+..
T Consensus 8 ~~~Ig~i~~~~~~~~~--~~~~~gi~~~a~~~g~~~~~~~~-~-~-----~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~ 78 (293)
T 3l6u_A 8 RNIVGFTIVNDKHEFA--QRLINAFKAEAKANKYEALVATS-Q-N-----SRISEREQILEFVHLKVDAIFITTLDDVYI 78 (293)
T ss_dssp -CEEEEEESCSCSHHH--HHHHHHHHHHHHHTTCEEEEEEC-S-S-----CHHHHHHHHHHHHHTTCSEEEEECSCTTTT
T ss_pred CcEEEEEEecCCcHHH--HHHHHHHHHHHHHcCCEEEEECC-C-C-----CHHHHHHHHHHHHHcCCCEEEEecCChHHH
Confidence 357888887533 54 77888899999999988764321 1 1 123455677777778899988844455555
Q ss_pred HHHHHHHHHcCC
Q 003821 154 IHLFREAKEMGL 165 (793)
Q Consensus 154 ~~~l~~a~~~g~ 165 (793)
...++++.+.|+
T Consensus 79 ~~~~~~~~~~~i 90 (293)
T 3l6u_A 79 GSAIEEAKKAGI 90 (293)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHcCC
Confidence 577888888776
No 216
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=53.80 E-value=40 Score=33.21 Aligned_cols=85 Identities=7% Similarity=-0.021 Sum_probs=56.1
Q ss_pred CceEEEEEEEcC---CCccccccHHHHHHHHHhc-CceeeEEeecCCCCCCCCChHHHHHHHHHhhcCCceEEEEeccCh
Q 003821 75 NWRKVIIIYEDD---ATNADTGNLALLSEALQIS-NSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRTESRVFIILQSSL 150 (793)
Q Consensus 75 ~w~~vaii~~dd---~~G~~~~~~~~l~~~l~~~-g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivvl~~~~ 150 (793)
+=++|+++..+. .|. ..+...+++.+++. |..+.......... ........+..+.+.+.|.||+.....
T Consensus 7 ~~~~Igvi~~~~~~~~~~--~~~~~gi~~~a~~~~g~~~~~~~~~~~~~----~~~~~~~~i~~l~~~~vdgiii~~~~~ 80 (304)
T 3gbv_A 7 KKYTFACLLPKHLEGEYW--TDVQKGIREAVTTYSDFNISANITHYDPY----DYNSFVATSQAVIEEQPDGVMFAPTVP 80 (304)
T ss_dssp CCEEEEEEEECCCTTSHH--HHHHHHHHHHHHHTGGGCEEEEEEEECSS----CHHHHHHHHHHHHTTCCSEEEECCSSG
T ss_pred CcceEEEEecCCCCchHH--HHHHHHHHHHHHHHHhCCeEEEEEcCCCC----CHHHHHHHHHHHHhcCCCEEEECCCCh
Confidence 346788887763 354 77888899999988 77665443322111 123455667788888999999833334
Q ss_pred HHHHHHHHHHHHcCC
Q 003821 151 AMGIHLFREAKEMGL 165 (793)
Q Consensus 151 ~~~~~~l~~a~~~g~ 165 (793)
+.....++.+.+.|+
T Consensus 81 ~~~~~~~~~~~~~~i 95 (304)
T 3gbv_A 81 QYTKGFTDALNELGI 95 (304)
T ss_dssp GGTHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHCCC
Confidence 445667888887776
No 217
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=51.68 E-value=30 Score=34.78 Aligned_cols=80 Identities=13% Similarity=0.094 Sum_probs=55.3
Q ss_pred eEEEEEEEcC--CCccccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcCCceEEEEeccChHHHH
Q 003821 77 RKVIIIYEDD--ATNADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRTESRVFIILQSSLAMGI 154 (793)
Q Consensus 77 ~~vaii~~dd--~~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivvl~~~~~~~~ 154 (793)
++|+++..+- .|. ..+...+++.+++.|.++.... ...+ ...-...+..+.+.+.|.||+.....+...
T Consensus 4 ~~Igvi~~~~~~~~~--~~~~~gi~~~a~~~g~~~~~~~--~~~~-----~~~~~~~i~~~~~~~vdgiIi~~~~~~~~~ 74 (330)
T 3uug_A 4 GSVGIAMPTKSSARW--IDDGNNIVKQLQEAGYKTDLQY--ADDD-----IPNQLSQIENMVTKGVKVLVIASIDGTTLS 74 (330)
T ss_dssp CEEEEEECCSSSTHH--HHHHHHHHHHHHHTTCEEEEEE--CTTC-----HHHHHHHHHHHHHHTCSEEEECCSSGGGGH
T ss_pred cEEEEEeCCCcchHH--HHHHHHHHHHHHHcCCEEEEee--CCCC-----HHHHHHHHHHHHHcCCCEEEEEcCCchhHH
Confidence 5788888763 455 7788999999999998865442 2111 233456677777778999988333444556
Q ss_pred HHHHHHHHcCC
Q 003821 155 HLFREAKEMGL 165 (793)
Q Consensus 155 ~~l~~a~~~g~ 165 (793)
..++++.+.|+
T Consensus 75 ~~~~~~~~~gi 85 (330)
T 3uug_A 75 DVLKQAGEQGI 85 (330)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHCCC
Confidence 77888888776
No 218
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=51.26 E-value=1.4e+02 Score=27.38 Aligned_cols=131 Identities=11% Similarity=0.039 Sum_probs=79.0
Q ss_pred eEEEEcCCChhhHHHHHHhccCCCc-cEEeeeCCCCCCCCCCCCCCeEEEecCChHHHHHHHHHHHhhcCceEEEEEEEc
Q 003821 7 VKVIVGMETWGAATMVADIGSRAQV-PVLSFAEPAIAPPLTSTRWPFLVRMANSSAEQITCTAALVGSYNWRKVIIIYED 85 (793)
Q Consensus 7 V~aiiGp~~s~~~~~va~i~~~~~i-P~Is~~~~~~~~~l~~~~~~~~~r~~p~~~~~~~ai~~ll~~~~w~~vaii~~d 85 (793)
+..+.|... .+...+.-+ ..+. .+||-+++ ...+.+.-.--+.-+..+..+..+++...-++.+ ++++|.-.
T Consensus 31 i~i~~~~l~--~~v~~a~~~-~~~~dVIISRGgt--a~~lr~~~~iPVV~I~~s~~Dil~al~~a~~~~~--kIavvg~~ 103 (196)
T 2q5c_A 31 PITKTASLT--RASKIAFGL-QDEVDAIISRGAT--SDYIKKSVSIPSISIKVTRFDTMRAVYNAKRFGN--ELALIAYK 103 (196)
T ss_dssp EEEEECCHH--HHHHHHHHH-TTTCSEEEEEHHH--HHHHHTTCSSCEEEECCCHHHHHHHHHHHGGGCS--EEEEEEES
T ss_pred eEEEECCHH--HHHHHHHHh-cCCCeEEEECChH--HHHHHHhCCCCEEEEcCCHhHHHHHHHHHHhhCC--cEEEEeCc
Confidence 444555432 233333333 3343 56776666 3344332222356888888888888888766543 89988766
Q ss_pred CCCccccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcCCceEEEEeccChHHHHHHHHHHHHcCC
Q 003821 86 DATNADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRTESRVFIILQSSLAMGIHLFREAKEMGL 165 (793)
Q Consensus 86 d~~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivvl~~~~~~~~~~l~~a~~~g~ 165 (793)
+. ...++.+.+.+ |.++... .+.. .++....+.++++.+.++||- .+ ...+.|+++|+
T Consensus 104 ~~----~~~~~~~~~ll---~~~i~~~-~~~~-------~~e~~~~i~~l~~~G~~vvVG-~~------~~~~~A~~~Gl 161 (196)
T 2q5c_A 104 HS----IVDKHEIEAML---GVKIKEF-LFSS-------EDEITTLISKVKTENIKIVVS-GK------TVTDEAIKQGL 161 (196)
T ss_dssp SC----SSCHHHHHHHH---TCEEEEE-EECS-------GGGHHHHHHHHHHTTCCEEEE-CH------HHHHHHHHTTC
T ss_pred ch----hhHHHHHHHHh---CCceEEE-EeCC-------HHHHHHHHHHHHHCCCeEEEC-CH------HHHHHHHHcCC
Confidence 65 22366666666 5555432 3332 246788999999999998654 22 23667788998
Q ss_pred C
Q 003821 166 V 166 (793)
Q Consensus 166 ~ 166 (793)
.
T Consensus 162 ~ 162 (196)
T 2q5c_A 162 Y 162 (196)
T ss_dssp E
T ss_pred c
Confidence 4
No 219
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=50.29 E-value=19 Score=36.31 Aligned_cols=81 Identities=12% Similarity=0.009 Sum_probs=51.7
Q ss_pred eEEEEEEEc--CCCccccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcCCceEEEEeccChHHHH
Q 003821 77 RKVIIIYED--DATNADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRTESRVFIILQSSLAMGI 154 (793)
Q Consensus 77 ~~vaii~~d--d~~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivvl~~~~~~~~ 154 (793)
++|+++..+ +.|. ....+.+++.+++.|.++... .+... ......+.+..+.+.+.+.||+.....+...
T Consensus 4 ~~Igvi~~~~~~~~~--~~~~~g~~~~~~~~g~~~~~~--~~~~~----d~~~q~~~i~~li~~~vdgiii~~~~~~~~~ 75 (316)
T 1tjy_A 4 ERIAFIPKLVGVGFF--TSGGNGAQEAGKALGIDVTYD--GPTEP----SVSGQVQLVNNFVNQGYDAIIVSAVSPDGLC 75 (316)
T ss_dssp CEEEEECSSSSSHHH--HHHHHHHHHHHHHHTCEEEEC--CCSSC----CHHHHHHHHHHHHHTTCSEEEECCSSSSTTH
T ss_pred CEEEEEeCCCCChHH--HHHHHHHHHHHHHhCCEEEEE--CCCCC----CHHHHHHHHHHHHHcCCCEEEEeCCCHHHHH
Confidence 578888754 3355 677888888999999775421 11111 1233456677777788999888333334345
Q ss_pred HHHHHHHHcCC
Q 003821 155 HLFREAKEMGL 165 (793)
Q Consensus 155 ~~l~~a~~~g~ 165 (793)
..++++.+.|+
T Consensus 76 ~~~~~a~~~gi 86 (316)
T 1tjy_A 76 PALKRAMQRGV 86 (316)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHCcC
Confidence 67788888775
No 220
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=50.20 E-value=57 Score=29.45 Aligned_cols=63 Identities=10% Similarity=0.207 Sum_probs=44.4
Q ss_pred eEEEEEEEcCCCcc-ccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcC-CceEEEE
Q 003821 77 RKVIIIYEDDATNA-DTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRT-ESRVFII 145 (793)
Q Consensus 77 ~~vaii~~dd~~G~-~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-~~~vivv 145 (793)
-+++||...|+-|- .......+.+.+++.|.++.....++.. .+.+.+.+.+..+. ++|+||.
T Consensus 11 ~~v~Ii~tGdE~g~i~D~n~~~l~~~L~~~G~~v~~~~iv~Dd------~~~i~~~l~~a~~~~~~DlVit 75 (172)
T 1mkz_A 11 TRIAILTVSNRRGEEDDTSGHYLRDSAQEAGHHVVDKAIVKEN------RYAIRAQVSAWIASDDVQVVLI 75 (172)
T ss_dssp CEEEEEEECSSCCGGGCHHHHHHHHHHHHTTCEEEEEEEECSC------HHHHHHHHHHHHHSSSCCEEEE
T ss_pred CEEEEEEEeCCCCcccCccHHHHHHHHHHCCCeEeEEEEeCCC------HHHHHHHHHHHHhcCCCCEEEe
Confidence 47888888777551 1234567888899999988776566543 36777888777655 5888887
No 221
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=48.01 E-value=16 Score=36.05 Aligned_cols=52 Identities=10% Similarity=0.164 Sum_probs=45.7
Q ss_pred cchhHHHHHHHHHhhcc-cc-ccccchhhHHHHHHHHHHHHHHHHHHhhhheee
Q 003821 486 QIGTALWFTFSSLFFAH-RE-RIYSNLTRLVVVVWLFVVLILNSSYTASLSSML 537 (793)
Q Consensus 486 ~~~~~~~~~~~~l~~~~-~~-~~~s~s~R~l~~~w~~~~lil~~~Yta~L~s~L 537 (793)
++.+++|+++.++.-.| ++ .|.+..+|++.+++.++++.+...+.+.+...+
T Consensus 93 ~~~~a~yf~~~t~tTvGyGd~~P~T~~Gk~f~~~~~l~Gi~~~~~~~~~~~~~l 146 (280)
T 3ukm_A 93 DFTSALFFASTVLSTTGYGHTVPLSDGGKAFCIIYSVIGIPFTLLFLTAVVQRI 146 (280)
T ss_dssp SHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhcchhheeeeeeccccCCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58899999999999888 55 589999999999999999999998888876554
No 222
>1zbm_A Hypothetical protein AF1704; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.30A {Archaeoglobus fulgidus} SCOP: c.94.1.1
Probab=47.91 E-value=12 Score=36.93 Aligned_cols=102 Identities=9% Similarity=-0.094 Sum_probs=56.9
Q ss_pred HHhhhCCCccccc-CchHHHHHHHhhcCCCCccccccCCHHHHHHHhhcCceEEEEec-hhhHHHHHhccCCceEEeCcc
Q 003821 550 GWLKASNLNVGFD-GDSFVRNYLENVLGFKPENILKVDHEYKYITDFESNRIAAAFLE-LSYERAFLSQHCKEYTATIPT 627 (793)
Q Consensus 550 ~dL~~~~~~~g~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~-~~~~~~~~~~~c~~~~~~~~~ 627 (793)
+||+ |.+||+. .++.....++... ...++ .+.+..+...++.+|++||++.. .+... +.+.....+.-.++.
T Consensus 99 ~DLk--GK~Iav~~~~s~~~~ll~~~l--~~~~~-~~~~~~~~~~al~~G~vDa~~~~~~~~~~-~~~~g~~~~~~~~~~ 172 (280)
T 1zbm_A 99 ISLD--GKRIAVPGRYTTANLLLKLAV--EDFEP-VEMPFDRIIQAVLDEEVDAGLLIHEGQIT-YADYGLKCVLDLWDW 172 (280)
T ss_dssp CCCT--TCEEEESCTTSHHHHHHHHHC--SSCEE-EECCGGGHHHHHHTTSSSEEEECSGGGGT-GGGGTCEEEEEHHHH
T ss_pred hhcC--CCEEEecCCCcHHHHHHHHHh--ccCce-EecCHHHHHHHHHcCCCCEEEEechHHhH-HHhcCCeEeccHHHH
Confidence 7887 8999995 4443333344332 22233 33456788999999999998854 34333 222211111111110
Q ss_pred ------ccccceEEEecCC-Cc-ChHHHHHHHHhhhcc
Q 003821 628 ------YRFGGFAFVFQKG-SP-LAADFSEAILKLSEN 657 (793)
Q Consensus 628 ------~~~~~~~~~~~k~-sp-l~~~in~~i~~l~e~ 657 (793)
......+++++++ .| +...|.+++.+..+.
T Consensus 173 ~~~~~g~~~~~~~~~~~~~~~p~~v~~~~~a~~~a~~~ 210 (280)
T 1zbm_A 173 WSEQVKLPLPLGLNAIRRDLSVEVQEEFLRAMRESIAF 210 (280)
T ss_dssp HHTTCSSCEEEEEEEEETTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHhhCCCCCeeEEEEcccCCHHHHHHHHHHHHHHHHH
Confidence 1111236788888 66 777888777776654
No 223
>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A*
Probab=47.69 E-value=31 Score=35.70 Aligned_cols=84 Identities=11% Similarity=0.027 Sum_probs=56.6
Q ss_pred HHHHHHhhcCceEEEEEEEcCCCccccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcCCceEEEE
Q 003821 66 CTAALVGSYNWRKVIIIYEDDATNADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRTESRVFII 145 (793)
Q Consensus 66 ai~~ll~~~~w~~vaii~~dd~~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivv 145 (793)
.+.++++.+| +++.||++...+ ....+.+.+.|++.|+++.. ..+.... +.+.+.+.+..+++.++|+||.
T Consensus 22 ~l~~~l~~~g-~~~livtd~~~~---~~~~~~v~~~L~~~g~~~~~-~~~~ge~----~~~~v~~~~~~~~~~~~d~IIa 92 (370)
T 1jq5_A 22 KIANYLEGIG-NKTVVIADEIVW---KIAGHTIVNELKKGNIAAEE-VVFSGEA----SRNEVERIANIARKAEAAIVIG 92 (370)
T ss_dssp GHHHHHTTTC-SEEEEEECHHHH---HHTHHHHHHHHHTTTCEEEE-EECCSSC----BHHHHHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHcC-CeEEEEEChHHH---HHHHHHHHHHHHHcCCeEEE-EeeCCCC----CHHHHHHHHHHHHhcCCCEEEE
Confidence 3567777788 999999877543 34678899999999988743 2333322 2356777777788889999987
Q ss_pred ecc-ChHHHHHHHH
Q 003821 146 LQS-SLAMGIHLFR 158 (793)
Q Consensus 146 l~~-~~~~~~~~l~ 158 (793)
+.+ +.-++..++.
T Consensus 93 vGGGsv~D~aK~iA 106 (370)
T 1jq5_A 93 VGGGKTLDTAKAVA 106 (370)
T ss_dssp EESHHHHHHHHHHH
T ss_pred eCChHHHHHHHHHH
Confidence 333 2345555554
No 224
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Probab=47.08 E-value=44 Score=34.03 Aligned_cols=59 Identities=17% Similarity=0.152 Sum_probs=50.6
Q ss_pred ccchhHHHHHHHHHhhcc-ccc-c--ccchhhHHHHHHHHHHHHHHHHHHhhhheeeeeccCC
Q 003821 485 IQIGTALWFTFSSLFFAH-RER-I--YSNLTRLVVVVWLFVVLILNSSYTASLSSMLTVQRLK 543 (793)
Q Consensus 485 ~~~~~~~~~~~~~l~~~~-~~~-~--~s~s~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~ 543 (793)
.++.+++|+++.++.-.| ++. | .+..++++..+=.+.++++.+.-++-+.+-++.|+..
T Consensus 93 ~sf~~af~fSv~T~TTvGYGd~~p~~~~~~~~~l~~~~~l~G~~l~a~~~giv~ak~srp~~r 155 (343)
T 3spc_A 93 NGFVAAFLFSIETQTTIGYGFRCVTEECPLAVFMVVVQSIVGCIIDSFMIGAIMAKMARPKKR 155 (343)
T ss_dssp CSHHHHHHHHHHHHSCCCCSSSEECSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCC
T ss_pred CCHHHHhheeeeeeEeecCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhh
Confidence 468999999999999888 553 3 5788999999999999999999999999988877654
No 225
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=46.28 E-value=1.2e+02 Score=24.84 Aligned_cols=60 Identities=15% Similarity=0.178 Sum_probs=38.5
Q ss_pred cccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcCCceEEEEeccCh--HHHHHHHHHHHHcCC
Q 003821 92 TGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRTESRVFIILQSSL--AMGIHLFREAKEMGL 165 (793)
Q Consensus 92 ~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivvl~~~~--~~~~~~l~~a~~~g~ 165 (793)
......+...+++.|..+... . +....+..+.+..++++++ +... .+...++++.++...
T Consensus 16 ~~~~~~l~~~L~~~g~~v~~~---~----------~~~~a~~~l~~~~~dlii~-d~~l~~~~g~~~~~~l~~~~~ 77 (132)
T 3lte_A 16 QAMAAAIERVLKRDHWQVEIA---H----------NGFDAGIKLSTFEPAIMTL-DLSMPKLDGLDVIRSLRQNKV 77 (132)
T ss_dssp HHHHHHHHHHHHHTTCEEEEE---S----------SHHHHHHHHHHTCCSEEEE-ESCBTTBCHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHCCcEEEEe---C----------CHHHHHHHHHhcCCCEEEE-ecCCCCCCHHHHHHHHHhcCc
Confidence 334677888888888765422 1 1233455566678898887 6553 346778888887654
No 226
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=45.89 E-value=35 Score=33.51 Aligned_cols=80 Identities=11% Similarity=0.006 Sum_probs=51.1
Q ss_pred eEEEEEEEc--CCCccccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcCCceEEEEeccChHHHH
Q 003821 77 RKVIIIYED--DATNADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRTESRVFIILQSSLAMGI 154 (793)
Q Consensus 77 ~~vaii~~d--d~~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivvl~~~~~~~~ 154 (793)
++|+++..+ +.|. ......+++.+++.|.++.... ...+ .....+.+..+.+.+.|.+|+.....+...
T Consensus 3 ~~Ig~i~~~~~~~~~--~~~~~gi~~~~~~~g~~~~~~~--~~~~-----~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~ 73 (290)
T 2fn9_A 3 GKMAIVISTLNNPWF--VVLAETAKQRAEQLGYEATIFD--SQND-----TAKESAHFDAIIAAGYDAIIFNPTDADGSI 73 (290)
T ss_dssp CEEEEEESCSSSHHH--HHHHHHHHHHHHHTTCEEEEEE--CTTC-----HHHHHHHHHHHHHTTCSEEEECCSCTTTTH
T ss_pred eEEEEEeCCCCChHH--HHHHHHHHHHHHHcCCEEEEeC--CCCC-----HHHHHHHHHHHHHcCCCEEEEecCChHHHH
Confidence 468888865 3465 7788889999999998765321 1111 133445677777778998888333333334
Q ss_pred HHHHHHHHcCC
Q 003821 155 HLFREAKEMGL 165 (793)
Q Consensus 155 ~~l~~a~~~g~ 165 (793)
..++++.+.|+
T Consensus 74 ~~~~~~~~~~i 84 (290)
T 2fn9_A 74 ANVKRAKEAGI 84 (290)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHCCC
Confidence 56777777665
No 227
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=45.35 E-value=1e+02 Score=25.66 Aligned_cols=68 Identities=22% Similarity=0.239 Sum_probs=44.0
Q ss_pred cccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcCCceEEEEeccCh----HHHHHHHHHHHHcCCCC
Q 003821 92 TGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRTESRVFIILQSSL----AMGIHLFREAKEMGLVG 167 (793)
Q Consensus 92 ~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivvl~~~~----~~~~~~l~~a~~~g~~~ 167 (793)
......++..|+..|.++... . +....+..+.+..++++++ +... .+...++++.++.+-..
T Consensus 16 ~~~~~~l~~~L~~~g~~v~~~---~----------~~~~a~~~l~~~~~dlvi~-D~~l~~~~~~g~~~~~~l~~~~~~~ 81 (136)
T 3kto_A 16 KDARAALSKLLSPLDVTIQCF---A----------SAESFMRQQISDDAIGMII-EAHLEDKKDSGIELLETLVKRGFHL 81 (136)
T ss_dssp HHHHHHHHHHHTTSSSEEEEE---S----------SHHHHTTSCCCTTEEEEEE-ETTGGGBTTHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHCCcEEEEe---C----------CHHHHHHHHhccCCCEEEE-eCcCCCCCccHHHHHHHHHhCCCCC
Confidence 345788888898888765422 1 1334555666678999888 7654 35678888888876333
Q ss_pred CCeEEEEe
Q 003821 168 PDSVWVIA 175 (793)
Q Consensus 168 ~~~~wi~~ 175 (793)
+ +.+++
T Consensus 82 ~--ii~~s 87 (136)
T 3kto_A 82 P--TIVMA 87 (136)
T ss_dssp C--EEEEE
T ss_pred C--EEEEE
Confidence 3 44444
No 228
>3ce9_A Glycerol dehydrogenase; NP_348253.1, 3-dehydroquinate syntha structural genomics, joint center for structural genomics; HET: MSE; 2.37A {Clostridium acetobutylicum atcc 824}
Probab=45.24 E-value=54 Score=33.63 Aligned_cols=96 Identities=13% Similarity=0.153 Sum_probs=60.1
Q ss_pred CeEEEecCChHHHHHHHHHHHhhcCceEEEEEEEcCCCccccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHH
Q 003821 51 PFLVRMANSSAEQITCTAALVGSYNWRKVIIIYEDDATNADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQE 130 (793)
Q Consensus 51 ~~~~r~~p~~~~~~~ai~~ll~~~~w~~vaii~~dd~~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~ 130 (793)
|+-+...+... ..+.++++.++.+++.||++...+ ....+.+.+.|++.|+++......+.. +.+.+.+
T Consensus 12 p~~i~~G~g~~---~~l~~~l~~~g~~~~livtd~~~~---~~~~~~v~~~L~~~g~~~~~~~~~~~~-----~~~~v~~ 80 (354)
T 3ce9_A 12 PLILEVGNNKI---YNIGQIIKKGNFKRVSLYFGEGIY---ELFGETIEKSIKSSNIEIEAVETVKNI-----DFDEIGT 80 (354)
T ss_dssp CSEEEEESSCG---GGHHHHHGGGTCSEEEEEEETTHH---HHHHHHHHHHHHTTTCEEEEEEEECCC-----BHHHHHH
T ss_pred CcEEEECCCHH---HHHHHHHHhcCCCeEEEEECccHH---HHHHHHHHHHHHHcCCeEEEEecCCCC-----CHHHHHH
Confidence 44344545432 235677888888999999987653 345788889999889876533223322 2345666
Q ss_pred HHHHhhcCCceEEEEecc-ChHHHHHHHH
Q 003821 131 KLLKLLRTESRVFIILQS-SLAMGIHLFR 158 (793)
Q Consensus 131 ~l~~l~~~~~~vivvl~~-~~~~~~~~l~ 158 (793)
. ..+++.++|+||.+.+ ..-++..++.
T Consensus 81 ~-~~~~~~~~d~IIavGGGsv~D~aK~vA 108 (354)
T 3ce9_A 81 N-AFKIPAEVDALIGIGGGKAIDAVKYMA 108 (354)
T ss_dssp H-HTTSCTTCCEEEEEESHHHHHHHHHHH
T ss_pred H-HHhhhcCCCEEEEECChHHHHHHHHHH
Confidence 6 6677778999887333 2345555544
No 229
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=44.09 E-value=29 Score=34.32 Aligned_cols=82 Identities=11% Similarity=-0.008 Sum_probs=55.2
Q ss_pred eEEEEEEEcC--CCccccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcCCceEEEEeccChHHHH
Q 003821 77 RKVIIIYEDD--ATNADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRTESRVFIILQSSLAMGI 154 (793)
Q Consensus 77 ~~vaii~~dd--~~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivvl~~~~~~~~ 154 (793)
.+|+++..+. .|. ..+...+++++++.|.++.... ... .+......+.+..+.+.+.|.||+.....+...
T Consensus 4 ~~Igvi~~~~~~~~~--~~~~~gi~~~a~~~g~~~~~~~---~~~--~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~ 76 (297)
T 3rot_A 4 DKYYLITHGSQDPYW--TSLFQGAKKAAEELKVDLQILA---PPG--ANDVPKQVQFIESALATYPSGIATTIPSDTAFS 76 (297)
T ss_dssp CEEEEECSCCCSHHH--HHHHHHHHHHHHHHTCEEEEEC---CSS--SCCHHHHHHHHHHHHHTCCSEEEECCCCSSTTH
T ss_pred EEEEEEecCCCCchH--HHHHHHHHHHHHHhCcEEEEEC---CCC--cCCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHH
Confidence 3678887663 355 7788999999999998876432 110 011234556777888889999888334445446
Q ss_pred HHHHHHHHcCC
Q 003821 155 HLFREAKEMGL 165 (793)
Q Consensus 155 ~~l~~a~~~g~ 165 (793)
..++++.+.|+
T Consensus 77 ~~~~~~~~~gi 87 (297)
T 3rot_A 77 KSLQRANKLNI 87 (297)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHCCC
Confidence 67888888776
No 230
>2zsk_A PH1733, 226AA long hypothetical aspartate racemase; alpha/beta fold, unknown function; 2.55A {Pyrococcus horikoshii}
Probab=43.70 E-value=45 Score=31.65 Aligned_cols=40 Identities=15% Similarity=0.169 Sum_probs=25.0
Q ss_pred HHHHHHHhhcCceEEEEEEEcCCCccccccHHHHHHHHHhcCcee
Q 003821 65 TCTAALVGSYNWRKVIIIYEDDATNADTGNLALLSEALQISNSEI 109 (793)
Q Consensus 65 ~ai~~ll~~~~w~~vaii~~dd~~G~~~~~~~~l~~~l~~~g~~v 109 (793)
++.++.+...+-++|+++.....- -...+++.+++.|+++
T Consensus 104 ~a~~~~~~~~~~~rigvlaT~~T~-----~~~~y~~~l~~~g~~v 143 (226)
T 2zsk_A 104 DAVAEEILKRGVRKVLLLGTKTTM-----TADFYIKTLEEKGLEV 143 (226)
T ss_dssp HHHHHHHHHTTCCEEEEESSTTTT-----SCHHHHHHHHTTTCEE
T ss_pred HHHHHHHHHcCCCeEEEEeCHHHH-----hhhHHHHHHHHCCCEE
Confidence 444444444567899999754321 1345677888888775
No 231
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=43.42 E-value=1.3e+02 Score=24.41 Aligned_cols=58 Identities=16% Similarity=0.082 Sum_probs=37.8
Q ss_pred ccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcCCceEEEEeccCh--HHHHHHHHHHHHcC
Q 003821 93 GNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRTESRVFIILQSSL--AMGIHLFREAKEMG 164 (793)
Q Consensus 93 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivvl~~~~--~~~~~~l~~a~~~g 164 (793)
.....+...++..|.++... . +....+..+.+..++++++ +... .+...++++.++..
T Consensus 13 ~~~~~l~~~l~~~g~~v~~~---~----------~~~~al~~l~~~~~dlvll-D~~~p~~~g~~~~~~l~~~~ 72 (122)
T 3gl9_A 13 VLRKIVSFNLKKEGYEVIEA---E----------NGQIALEKLSEFTPDLIVL-XIMMPVMDGFTVLKKLQEKE 72 (122)
T ss_dssp HHHHHHHHHHHHTTCEEEEE---S----------SHHHHHHHHTTBCCSEEEE-CSCCSSSCHHHHHHHHHTST
T ss_pred HHHHHHHHHHHHCCcEEEEe---C----------CHHHHHHHHHhcCCCEEEE-eccCCCCcHHHHHHHHHhcc
Confidence 34677888888888765421 1 1234566677778998887 6543 34677888887654
No 232
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=43.04 E-value=34 Score=34.14 Aligned_cols=80 Identities=14% Similarity=0.056 Sum_probs=49.8
Q ss_pred EEEEEEEcCC-CccccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcCCceEEEEeccChHHHHHH
Q 003821 78 KVIIIYEDDA-TNADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRTESRVFIILQSSLAMGIHL 156 (793)
Q Consensus 78 ~vaii~~dd~-~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivvl~~~~~~~~~~ 156 (793)
+|+++..+.. |. ......+++++++.|.++.... .... ......+.+..+.+.+.+.||+.....+.....
T Consensus 3 ~Ig~i~~~~~~~~--~~~~~gi~~~~~~~g~~~~~~~--~~~~----~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~ 74 (313)
T 2h3h_A 3 TIGVIGKSVHPYW--SQVEQGVKAAGKALGVDTKFFV--PQKE----DINAQLQMLESFIAEGVNGIAIAPSDPTAVIPT 74 (313)
T ss_dssp EEEEECSCSSHHH--HHHHHHHHHHHHHHTCEEEEEC--CSSS----CHHHHHHHHHHHHHTTCSEEEECCSSTTTTHHH
T ss_pred EEEEEeCCCcHHH--HHHHHHHHHHHHHcCCEEEEEC--CCCC----CHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHH
Confidence 5777765432 55 7778888889999998765321 1111 113345567777777899888833334444456
Q ss_pred HHHHHHcCC
Q 003821 157 FREAKEMGL 165 (793)
Q Consensus 157 l~~a~~~g~ 165 (793)
++++.+.|+
T Consensus 75 ~~~~~~~~i 83 (313)
T 2h3h_A 75 IKKALEMGI 83 (313)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHHCCC
Confidence 777777765
No 233
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=42.97 E-value=35 Score=34.71 Aligned_cols=80 Identities=8% Similarity=0.112 Sum_probs=54.8
Q ss_pred ceEEEEEEEcC---CCccccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhc--CCceEEEEeccCh
Q 003821 76 WRKVIIIYEDD---ATNADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLR--TESRVFIILQSSL 150 (793)
Q Consensus 76 w~~vaii~~dd---~~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~vivvl~~~~ 150 (793)
-.+|++|..+. .|. ......+++++++.|.++... . ...+ .......+..+.+ .++|.||+ ....
T Consensus 3 ~~~Ig~i~p~~~~~~f~--~~~~~g~~~~a~~~g~~~~~~-~-~~~~-----~~~~~~~i~~~i~~~~~vDgiIi-~~~~ 72 (350)
T 3h75_A 3 LTSVVFLNPGNSTETFW--VSYSQFMQAAARDLGLDLRIL-Y-AERD-----PQNTLQQARELFQGRDKPDYLML-VNEQ 72 (350)
T ss_dssp CCEEEEEECSCTTCHHH--HHHHHHHHHHHHHHTCEEEEE-E-CTTC-----HHHHHHHHHHHHHSSSCCSEEEE-ECCS
T ss_pred CCEEEEECCCCCCChHH--HHHHHHHHHHHHHcCCeEEEE-E-CCCC-----HHHHHHHHHHHHhcCCCCCEEEE-eCch
Confidence 36889998763 455 778889999999999987644 1 1111 1334556677766 48999888 4444
Q ss_pred HHHHHHHHHHHHcCC
Q 003821 151 AMGIHLFREAKEMGL 165 (793)
Q Consensus 151 ~~~~~~l~~a~~~g~ 165 (793)
.....+++.+.+.|+
T Consensus 73 ~~~~~~~~~~~~~gi 87 (350)
T 3h75_A 73 YVAPQILRLSQGSGI 87 (350)
T ss_dssp SHHHHHHHHHTTSCC
T ss_pred hhHHHHHHHHHhCCC
Confidence 556677888887776
No 234
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=42.97 E-value=32 Score=33.39 Aligned_cols=81 Identities=10% Similarity=-0.032 Sum_probs=52.2
Q ss_pred EEEEEEEc--CCCccccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcCC-ceEEEEeccChHHHH
Q 003821 78 KVIIIYED--DATNADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRTE-SRVFIILQSSLAMGI 154 (793)
Q Consensus 78 ~vaii~~d--d~~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~-~~vivvl~~~~~~~~ 154 (793)
+|+++..+ +.|. ......+++.+++.|.++..... ... .........+..+.+.+ .|.||+.....+...
T Consensus 2 ~Ig~i~~~~~~~~~--~~~~~gi~~~~~~~g~~~~~~~~-~~~----~~~~~~~~~i~~l~~~~~vdgii~~~~~~~~~~ 74 (276)
T 3ksm_A 2 KLLLVLKGDSNAYW--RQVYLGAQKAADEAGVTLLHRST-KDD----GDIAGQIQILSYHLSQAPPDALILAPNSAEDLT 74 (276)
T ss_dssp EEEEECSCSSSTHH--HHHHHHHHHHHHHHTCEEEECCC-SST----TCHHHHHHHHHHHHHHSCCSEEEECCSSTTTTH
T ss_pred eEEEEeCCCCChHH--HHHHHHHHHHHHHcCCEEEEECC-CCC----CCHHHHHHHHHHHHHhCCCCEEEEeCCCHHHHH
Confidence 57777754 3355 77888999999999987653311 111 11233455677777777 999888332344556
Q ss_pred HHHHHHHHcCC
Q 003821 155 HLFREAKEMGL 165 (793)
Q Consensus 155 ~~l~~a~~~g~ 165 (793)
..++++.+.|+
T Consensus 75 ~~~~~~~~~~i 85 (276)
T 3ksm_A 75 PSVAQYRARNI 85 (276)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHCCC
Confidence 67888888776
No 235
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=42.96 E-value=62 Score=31.67 Aligned_cols=80 Identities=10% Similarity=0.016 Sum_probs=53.9
Q ss_pred eEEEEEEEcC--CCccccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcCCceEEEEeccChH---
Q 003821 77 RKVIIIYEDD--ATNADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRTESRVFIILQSSLA--- 151 (793)
Q Consensus 77 ~~vaii~~dd--~~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivvl~~~~~--- 151 (793)
+.|+++..+. .|. ......+++.+++.|..+..... . . ....-...+..+.+.+.|.+|+......
T Consensus 16 ~~Igvi~~~~~~~~~--~~~~~gi~~~a~~~g~~~~~~~~-~-~-----~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~ 86 (298)
T 3tb6_A 16 KTIGVLTTYISDYIF--PSIIRGIESYLSEQGYSMLLTST-N-N-----NPDNERRGLENLLSQHIDGLIVEPTKSALQT 86 (298)
T ss_dssp CEEEEEESCSSSTTH--HHHHHHHHHHHHHTTCEEEEEEC-T-T-----CHHHHHHHHHHHHHTCCSEEEECCSSTTSCC
T ss_pred ceEEEEeCCCCchHH--HHHHHHHHHHHHHCCCEEEEEeC-C-C-----ChHHHHHHHHHHHHCCCCEEEEecccccccC
Confidence 7899998763 355 77889999999999988654321 1 1 1233456677777889999888222221
Q ss_pred HHHHHHHHHHHcCC
Q 003821 152 MGIHLFREAKEMGL 165 (793)
Q Consensus 152 ~~~~~l~~a~~~g~ 165 (793)
.....++++.+.|+
T Consensus 87 ~~~~~~~~~~~~~i 100 (298)
T 3tb6_A 87 PNIGYYLNLEKNGI 100 (298)
T ss_dssp TTHHHHHHHHHTTC
T ss_pred CcHHHHHHHHhcCC
Confidence 34466777777776
No 236
>4esw_A Pyrimidine biosynthesis enzyme THI13; thiamin pyrimidine biosynthesis, transferase; HET: CIT; 1.60A {Candida albicans} PDB: 4esx_A*
Probab=42.66 E-value=31 Score=35.17 Aligned_cols=74 Identities=14% Similarity=0.127 Sum_probs=45.4
Q ss_pred eeeccCCCCCCChHHhhhCCCcccccCchHHHHH---HHhhcCCCCccccccCCHHHHHHHhhcCceEEEEechhhHHHH
Q 003821 537 LTVQRLKPNVTDIGWLKASNLNVGFDGDSFVRNY---LENVLGFKPENILKVDHEYKYITDFESNRIAAAFLELSYERAF 613 (793)
Q Consensus 537 Lt~~~~~~~i~sl~dL~~~~~~~g~~~~~~~~~~---l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~ 613 (793)
+...+-.+.+++++||+ |+++|+..+. ...+ +-...+.....+..+....+...++.+|++|+.+.-.++....
T Consensus 94 ~~~~~~~~~~~~~~dLk--GK~ig~~~~~-~~~~l~~~L~~~Gl~~~dv~~v~~~~~~~~al~~G~vDa~~~~~p~~~~~ 170 (342)
T 4esw_A 94 ICYLEGSGITSDFQSLK--GKRIGYVGEF-GKIQVDELTKHYGMTPDDYVAVRCGMNVAKYILEGTIDCGIGIECIQQVE 170 (342)
T ss_dssp EEEETTSSCCSSGGGGT--TCEEEESSSH-HHHHHHHHHGGGTCCGGGSEEEECGGGHHHHHHHTSSSEEEEETTTHHHH
T ss_pred ccccccccccCCHHHhC--CCEEEecCCc-hHHHHHHHHHHcCCChhheEEecCCHHHHHHHHcCCCCEEEEeccchHHH
Confidence 33444555678899999 8999885432 2222 2223344444444444444567889999999998766555443
No 237
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=42.49 E-value=1.5e+02 Score=24.71 Aligned_cols=57 Identities=5% Similarity=-0.012 Sum_probs=39.8
Q ss_pred cccHHHHHHHHHh-cCceeeEEeecCCCCCCCCChHHHHHHHHHhhc-CCceEEEEeccC---hHHHHHHHHHHHH
Q 003821 92 TGNLALLSEALQI-SNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLR-TESRVFIILQSS---LAMGIHLFREAKE 162 (793)
Q Consensus 92 ~~~~~~l~~~l~~-~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~-~~~~vivvl~~~---~~~~~~~l~~a~~ 162 (793)
......++..|++ .|.++... . +....+..+++ ..++++|+ +.. ..+...++++.++
T Consensus 14 ~~~~~~l~~~L~~~~~~~v~~~---~----------~~~~a~~~l~~~~~~dlvi~-D~~l~~~~~g~~~~~~l~~ 75 (140)
T 3lua_A 14 EYEREKTKIIFDNIGEYDFIEV---E----------NLKKFYSIFKDLDSITLIIM-DIAFPVEKEGLEVLSAIRN 75 (140)
T ss_dssp HHHHHHHHHHHHHHCCCEEEEE---C----------SHHHHHTTTTTCCCCSEEEE-CSCSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCccEEEE---C----------CHHHHHHHHhcCCCCcEEEE-eCCCCCCCcHHHHHHHHHh
Confidence 3457788888888 78775522 1 23445666777 78999888 765 3467788888888
No 238
>3hl0_A Maleylacetate reductase; structur genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE NAD EPE; 1.60A {Agrobacterium tumefaciens str}
Probab=42.19 E-value=24 Score=36.36 Aligned_cols=71 Identities=7% Similarity=0.071 Sum_probs=48.3
Q ss_pred HHHHHHHhhcCceEEEEEEEcCCCccccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcCCceEEE
Q 003821 65 TCTAALVGSYNWRKVIIIYEDDATNADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRTESRVFI 144 (793)
Q Consensus 65 ~ai~~ll~~~~w~~vaii~~dd~~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv 144 (793)
..+.++++.+|.+|+.||++.... +..+.+.+.|++.++.+ ...+.+.. +.+.+.+.+..+++.++|+||
T Consensus 23 ~~l~~~l~~~g~~r~liVtd~~~~----~~~~~v~~~L~~~~~~v--~~~v~~~p----~~~~v~~~~~~~~~~~~D~II 92 (353)
T 3hl0_A 23 ADVAEEIRRLGLSRALVLSTPQQK----GDAEALASRLGRLAAGV--FSEAAMHT----PVEVTKTAVEAYRAAGADCVV 92 (353)
T ss_dssp GGHHHHHHHTTCCCEEEECCGGGH----HHHHHHHHHHGGGEEEE--ECCCCTTC----BHHHHHHHHHHHHHTTCSEEE
T ss_pred HHHHHHHHHhCCCEEEEEecCchh----hHHHHHHHHHhhCCcEE--ecCcCCCC----cHHHHHHHHHHHhccCCCEEE
Confidence 346778888999999999876543 35788888888765432 11222221 235577777778888999988
Q ss_pred E
Q 003821 145 I 145 (793)
Q Consensus 145 v 145 (793)
-
T Consensus 93 a 93 (353)
T 3hl0_A 93 S 93 (353)
T ss_dssp E
T ss_pred E
Confidence 7
No 239
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=41.20 E-value=71 Score=31.44 Aligned_cols=80 Identities=8% Similarity=0.026 Sum_probs=51.1
Q ss_pred eEEEEEEEc--CCCccccccHHHHHHHHHhcCc-eeeEEeecCCCCCCCCChHHHHHHHHHhhcCCceEEEEeccChHHH
Q 003821 77 RKVIIIYED--DATNADTGNLALLSEALQISNS-EIEYRLVLPPISYLTDPKQFLQEKLLKLLRTESRVFIILQSSLAMG 153 (793)
Q Consensus 77 ~~vaii~~d--d~~G~~~~~~~~l~~~l~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivvl~~~~~~~ 153 (793)
++|+++..+ +.|. ......+++.+++.|. ++.... ...+ .....+.+..+.+.+.+.||+.....+..
T Consensus 3 ~~Igvi~~~~~~~~~--~~~~~gi~~~a~~~g~~~~~~~~--~~~~-----~~~~~~~~~~~~~~~vdgiii~~~~~~~~ 73 (309)
T 2fvy_A 3 TRIGVTIYKYDDNFM--SVVRKAIEQDAKAAPDVQLLMND--SQND-----QSKQNDQIDVLLAKGVKALAINLVDPAAA 73 (309)
T ss_dssp EEEEEEESCTTSHHH--HHHHHHHHHHHHTCTTEEEEEEE--CTTC-----HHHHHHHHHHHHHTTCSEEEECCSSGGGH
T ss_pred cEEEEEeccCCcHHH--HHHHHHHHHHHHhcCCeEEEEec--CCCC-----HHHHHHHHHHHHHcCCCEEEEeCCCcchh
Confidence 478888764 3355 7788889999999996 654321 1111 13345567777778899988822334334
Q ss_pred HHHHHHHHHcCC
Q 003821 154 IHLFREAKEMGL 165 (793)
Q Consensus 154 ~~~l~~a~~~g~ 165 (793)
...++++.+.|+
T Consensus 74 ~~~~~~~~~~~i 85 (309)
T 2fvy_A 74 GTVIEKARGQNV 85 (309)
T ss_dssp HHHHHHHHTTTC
T ss_pred HHHHHHHHHCCC
Confidence 566777777665
No 240
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=41.18 E-value=55 Score=31.79 Aligned_cols=78 Identities=12% Similarity=-0.081 Sum_probs=52.0
Q ss_pred ceEEEEEEEcCC--CccccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcCCceEEEEeccChHHH
Q 003821 76 WRKVIIIYEDDA--TNADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRTESRVFIILQSSLAMG 153 (793)
Q Consensus 76 w~~vaii~~dd~--~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivvl~~~~~~~ 153 (793)
-+.|+++..+-. |. ..+...+++.+++.|..+.... ... ........+..+.+.+.|.||+ .....
T Consensus 7 s~~Igvi~~~~~~~~~--~~~~~gi~~~~~~~g~~~~~~~-~~~------~~~~~~~~~~~l~~~~vdgiIi-~~~~~-- 74 (276)
T 3jy6_A 7 SKLIAVIVANIDDYFS--TELFKGISSILESRGYIGVLFD-ANA------DIEREKTLLRAIGSRGFDGLIL-QSFSN-- 74 (276)
T ss_dssp CCEEEEEESCTTSHHH--HHHHHHHHHHHHTTTCEEEEEE-CTT------CHHHHHHHHHHHHTTTCSEEEE-ESSCC--
T ss_pred CcEEEEEeCCCCchHH--HHHHHHHHHHHHHCCCEEEEEe-CCC------CHHHHHHHHHHHHhCCCCEEEE-ecCCc--
Confidence 357888887633 54 7788889999999998765432 111 1233456677777788999888 33333
Q ss_pred HHHHHHHHHcCC
Q 003821 154 IHLFREAKEMGL 165 (793)
Q Consensus 154 ~~~l~~a~~~g~ 165 (793)
...++.+.+.|+
T Consensus 75 ~~~~~~l~~~~i 86 (276)
T 3jy6_A 75 PQTVQEILHQQM 86 (276)
T ss_dssp HHHHHHHHTTSS
T ss_pred HHHHHHHHHCCC
Confidence 566777777665
No 241
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=40.26 E-value=32 Score=33.35 Aligned_cols=79 Identities=13% Similarity=0.069 Sum_probs=50.6
Q ss_pred eEEEEEEEcCC--CccccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcCCceEEEEeccChHHHH
Q 003821 77 RKVIIIYEDDA--TNADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRTESRVFIILQSSLAMGI 154 (793)
Q Consensus 77 ~~vaii~~dd~--~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivvl~~~~~~~~ 154 (793)
+.|+++..+.. |. ..+...+++.+++.|..+.... .. . ........+..+.+.+.|.+|+ ........
T Consensus 3 ~~Igvi~~~~~~~~~--~~~~~gi~~~a~~~g~~~~~~~-~~-~-----~~~~~~~~~~~l~~~~vdgiIi-~~~~~~~~ 72 (272)
T 3o74_A 3 RTLGFILPDLENPSY--ARIAKQLEQGARARGYQLLIAS-SD-D-----QPDSERQLQQLFRARRCDALFV-ASCLPPED 72 (272)
T ss_dssp CEEEEEESCTTCHHH--HHHHHHHHHHHHHTTCEEEEEE-CT-T-----CHHHHHHHHHHHHHTTCSEEEE-CCCCCSSC
T ss_pred eEEEEEeCCCcChhH--HHHHHHHHHHHHHCCCEEEEEe-CC-C-----CHHHHHHHHHHHHHcCCCEEEE-ecCccccH
Confidence 46888887633 54 7778888899999998765431 11 1 1233456677777788898888 44332234
Q ss_pred HHHHHHHHcCC
Q 003821 155 HLFREAKEMGL 165 (793)
Q Consensus 155 ~~l~~a~~~g~ 165 (793)
..++++.+.|+
T Consensus 73 ~~~~~~~~~~i 83 (272)
T 3o74_A 73 DSYRELQDKGL 83 (272)
T ss_dssp CHHHHHHHTTC
T ss_pred HHHHHHHHcCC
Confidence 55667777665
No 242
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=40.23 E-value=65 Score=27.07 Aligned_cols=59 Identities=15% Similarity=0.168 Sum_probs=37.7
Q ss_pred cccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcCCceEEEEeccCh--HHHHHHHHHHHHcC
Q 003821 92 TGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRTESRVFIILQSSL--AMGIHLFREAKEMG 164 (793)
Q Consensus 92 ~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivvl~~~~--~~~~~~l~~a~~~g 164 (793)
......+...++..|..+.. ... ....+..+.+..++++++ +... .+...++++.++..
T Consensus 14 ~~~~~~l~~~L~~~g~~v~~---~~~----------~~~al~~~~~~~~dlvl~-D~~lp~~~g~~~~~~lr~~~ 74 (136)
T 3t6k_A 14 DTVAEMLELVLRGAGYEVRR---AAS----------GEEALQQIYKNLPDALIC-DVLLPGIDGYTLCKRVRQHP 74 (136)
T ss_dssp HHHHHHHHHHHHHTTCEEEE---ESS----------HHHHHHHHHHSCCSEEEE-ESCCSSSCHHHHHHHHHHSG
T ss_pred HHHHHHHHHHHHHCCCEEEE---eCC----------HHHHHHHHHhCCCCEEEE-eCCCCCCCHHHHHHHHHcCC
Confidence 33567788888888876532 111 233455566678998887 6543 35677888887753
No 243
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=40.11 E-value=10 Score=35.68 Aligned_cols=31 Identities=16% Similarity=0.172 Sum_probs=28.0
Q ss_pred eEEEEcCCChhhHHHHHHhccCCCccEEeee
Q 003821 7 VKVIVGMETWGAATMVADIGSRAQVPVLSFA 37 (793)
Q Consensus 7 V~aiiGp~~s~~~~~va~i~~~~~iP~Is~~ 37 (793)
+..|+||.+|+=......+++.+++|+||.+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~istG 32 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVHISTG 32 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeEEcHH
Confidence 4678999999999999999999999999864
No 244
>3p6l_A Sugar phosphate isomerase/epimerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG; HET: CIT; 1.85A {Parabacteroides distasonis}
Probab=39.98 E-value=1.2e+02 Score=28.99 Aligned_cols=93 Identities=8% Similarity=-0.075 Sum_probs=66.7
Q ss_pred HHHHHHHhhcCceEEEEEEEcC------------CCccccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHH
Q 003821 65 TCTAALVGSYNWRKVIIIYEDD------------ATNADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKL 132 (793)
Q Consensus 65 ~ai~~ll~~~~w~~vaii~~dd------------~~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l 132 (793)
...++.++..|.+.|=+...+. ... ....+.+++.+++.|+++......... ....+.+.+
T Consensus 25 ~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~gl~i~~~~~~~~~-----~~~~~~~~i 97 (262)
T 3p6l_A 25 TEALDKTQELGLKYIEIYPGHKLGGKWGDKVFDFNLD--AQTQKEIKELAASKGIKIVGTGVYVAE-----KSSDWEKMF 97 (262)
T ss_dssp HHHHHHHHHTTCCEEEECTTEECCGGGTTCEESTTCC--HHHHHHHHHHHHHTTCEEEEEEEECCS-----STTHHHHHH
T ss_pred HHHHHHHHHcCCCEEeecCCcccccccccccccccCC--HHHHHHHHHHHHHcCCeEEEEeccCCc-----cHHHHHHHH
Confidence 5566777888999888764321 111 334788999999999998766444321 224677777
Q ss_pred HHhhcCCceEEEEeccChHHHHHHHHHHHHcCC
Q 003821 133 LKLLRTESRVFIILQSSLAMGIHLFREAKEMGL 165 (793)
Q Consensus 133 ~~l~~~~~~vivvl~~~~~~~~~~l~~a~~~g~ 165 (793)
...+..+++.+++ ....+....+.+.|.+.|+
T Consensus 98 ~~A~~lGa~~v~~-~~~~~~~~~l~~~a~~~gv 129 (262)
T 3p6l_A 98 KFAKAMDLEFITC-EPALSDWDLVEKLSKQYNI 129 (262)
T ss_dssp HHHHHTTCSEEEE-CCCGGGHHHHHHHHHHHTC
T ss_pred HHHHHcCCCEEEe-cCCHHHHHHHHHHHHHhCC
Confidence 7777789998888 7767777888888888887
No 245
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=39.80 E-value=39 Score=22.64 Aligned_cols=7 Identities=29% Similarity=0.458 Sum_probs=2.7
Q ss_pred HHHhhhc
Q 003821 713 VRNYTSR 719 (793)
Q Consensus 713 ~E~~~~~ 719 (793)
+.++.|+
T Consensus 30 ~~~~~RR 36 (44)
T 2l2t_A 30 FAVYVRR 36 (44)
T ss_dssp HHHHHHT
T ss_pred HHHHhhh
Confidence 3333333
No 246
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=38.04 E-value=1.2e+02 Score=26.01 Aligned_cols=59 Identities=19% Similarity=0.018 Sum_probs=39.9
Q ss_pred cccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcCCceEEEEeccC--hHHHHHHHHHHHHcC
Q 003821 92 TGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRTESRVFIILQSS--LAMGIHLFREAKEMG 164 (793)
Q Consensus 92 ~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivvl~~~--~~~~~~~l~~a~~~g 164 (793)
......+++.|++.|..+... . +....+..+++..+++||+ +.. ..+...++++.++..
T Consensus 17 ~~~~~~l~~~L~~~g~~v~~~---~----------~~~~al~~l~~~~~dlii~-D~~l~~~~g~~~~~~lr~~~ 77 (154)
T 3gt7_A 17 PTQAEHLKHILEETGYQTEHV---R----------NGREAVRFLSLTRPDLIIS-DVLMPEMDGYALCRWLKGQP 77 (154)
T ss_dssp HHHHHHHHHHHHTTTCEEEEE---S----------SHHHHHHHHTTCCCSEEEE-ESCCSSSCHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHCCCEEEEe---C----------CHHHHHHHHHhCCCCEEEE-eCCCCCCCHHHHHHHHHhCC
Confidence 345788888898888765321 1 1334566677778999888 654 345677888888765
No 247
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=37.93 E-value=1.8e+02 Score=24.32 Aligned_cols=72 Identities=13% Similarity=0.255 Sum_probs=42.7
Q ss_pred cccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcCCceEEEEeccCh--HHHHHHHHHHHHcCCCCCC
Q 003821 92 TGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRTESRVFIILQSSL--AMGIHLFREAKEMGLVGPD 169 (793)
Q Consensus 92 ~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivvl~~~~--~~~~~~l~~a~~~g~~~~~ 169 (793)
......+...++..|...... ... +....+..+.+..+++||+ +... .+...++++.++.+....-
T Consensus 15 ~~~~~~l~~~L~~~~~~~~v~-~~~----------~~~~a~~~l~~~~~dlii~-D~~l~~~~g~~~~~~lr~~~~~~~~ 82 (144)
T 3kht_A 15 PDDIALIRRVLDRKDIHCQLE-FVD----------NGAKALYQVQQAKYDLIIL-DIGLPIANGFEVMSAVRKPGANQHT 82 (144)
T ss_dssp HHHHHHHHHHHHHTTCCEEEE-EES----------SHHHHHHHHTTCCCSEEEE-CTTCGGGCHHHHHHHHHSSSTTTTC
T ss_pred HHHHHHHHHHHHhcCCCeeEE-EEC----------CHHHHHHHhhcCCCCEEEE-eCCCCCCCHHHHHHHHHhcccccCC
Confidence 345778888888888752211 111 1334566677778998888 6653 3467788888874332222
Q ss_pred eEEEEe
Q 003821 170 SVWVIA 175 (793)
Q Consensus 170 ~~wi~~ 175 (793)
.+.+++
T Consensus 83 pii~~s 88 (144)
T 3kht_A 83 PIVILT 88 (144)
T ss_dssp CEEEEE
T ss_pred CEEEEe
Confidence 244444
No 248
>3jzd_A Iron-containing alcohol dehydrogenase; YP_298327.1, putative alcohol dehedrogenase, structural GENO joint center for structural genomics; HET: MSE NAD PG4 P6G PGE; 2.10A {Ralstonia eutropha}
Probab=37.87 E-value=25 Score=36.28 Aligned_cols=83 Identities=7% Similarity=0.014 Sum_probs=52.4
Q ss_pred HHHHHHHhhcCceEEEEEEEcCCCccccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcCCceEEE
Q 003821 65 TCTAALVGSYNWRKVIIIYEDDATNADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRTESRVFI 144 (793)
Q Consensus 65 ~ai~~ll~~~~w~~vaii~~dd~~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv 144 (793)
..+.+.++.+|.+++.||++....| ..+.+.+.|++.+..+ + ....+.. +.+.+.+.+..+++.++|+||
T Consensus 25 ~~l~~~l~~~g~~r~liVtd~~~~~----~~~~v~~~L~~~~~~~-f-~~v~~~p----~~~~v~~~~~~~~~~~~D~II 94 (358)
T 3jzd_A 25 SQVAAEVERLGAKRALVLCTPNQQA----EAERIADLLGPLSAGV-Y-AGAVMHV----PIESARDATARAREAGADCAV 94 (358)
T ss_dssp GGHHHHHHHTTCSCEEEECCGGGHH----HHHHHHHHHGGGEEEE-E-CCCCTTC----BHHHHHHHHHHHHHHTCSEEE
T ss_pred HHHHHHHHHhCCCeEEEEeCCcHHH----HHHHHHHHhccCCEEE-e-cCCcCCC----CHHHHHHHHHHhhccCCCEEE
Confidence 3467788889999999998776433 5788888888765322 1 1122211 235567777778888999988
Q ss_pred EeccCh--HHHHHHHH
Q 003821 145 ILQSSL--AMGIHLFR 158 (793)
Q Consensus 145 vl~~~~--~~~~~~l~ 158 (793)
- .+.. -++.+++.
T Consensus 95 a-vGGGsviD~aK~iA 109 (358)
T 3jzd_A 95 A-VGGGSTTGLGKAIA 109 (358)
T ss_dssp E-EESHHHHHHHHHHH
T ss_pred E-eCCcHHHHHHHHHH
Confidence 7 3433 33444443
No 249
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=37.05 E-value=1.2e+02 Score=24.72 Aligned_cols=59 Identities=12% Similarity=0.154 Sum_probs=39.6
Q ss_pred cccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcCCceEEEEeccC--hHHHHHHHHHHHHcC
Q 003821 92 TGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRTESRVFIILQSS--LAMGIHLFREAKEMG 164 (793)
Q Consensus 92 ~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivvl~~~--~~~~~~~l~~a~~~g 164 (793)
......+++.+++.|..+... . +....+..+.+..++++++ +.. ..++..++++.++..
T Consensus 13 ~~~~~~l~~~L~~~g~~v~~~---~----------~~~~a~~~l~~~~~dlii~-D~~l~~~~g~~~~~~l~~~~ 73 (127)
T 3i42_A 13 QAAAETFKELLEMLGFQADYV---M----------SGTDALHAMSTRGYDAVFI-DLNLPDTSGLALVKQLRALP 73 (127)
T ss_dssp HHHHHHHHHHHHHTTEEEEEE---S----------SHHHHHHHHHHSCCSEEEE-ESBCSSSBHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHcCCCEEEE---C----------CHHHHHHHHHhcCCCEEEE-eCCCCCCCHHHHHHHHHhhh
Confidence 345788888898888764422 1 1234555666678999888 654 345778888888863
No 250
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=36.77 E-value=1.2e+02 Score=31.83 Aligned_cols=90 Identities=12% Similarity=-0.013 Sum_probs=56.6
Q ss_pred ceEEEEEEEcCCCccccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcCCceEEEEeccCh-----
Q 003821 76 WRKVIIIYEDDATNADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRTESRVFIILQSSL----- 150 (793)
Q Consensus 76 w~~vaii~~dd~~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivvl~~~~----- 150 (793)
=++|+|+|... ||.-+.+++.+.+.+++.|++++......... .+....+..+. .++.+++ .++.
T Consensus 265 ~~~v~I~Y~S~-yGnTe~mA~~ia~gl~~~Gv~~~~~~~~d~~~------~~~s~i~~~i~--~~~~ivl-GspT~~~~~ 334 (410)
T 4dik_A 265 KGKVTVIYDSM-YGFVENVMKKAIDSLKEKGFTPVVYKFSDEER------PAISEILKDIP--DSEALIF-GVSTYEAEI 334 (410)
T ss_dssp TTEEEEEEECS-SSHHHHHHHHHHHHHHHTTCEEEEEEECSSCC------CCHHHHHHHST--TCSEEEE-EECCTTSSS
T ss_pred ccceeeEEecc-cChHHHHHHHHHHHHHhcCCceEEEEeccCCC------CCHHHHHHHHH--hCCeEEE-EeCCcCCcC
Confidence 35899999765 45324568888889999998865432222221 33555566554 5777777 5543
Q ss_pred -HHHHHHHHHHHHcCCCCCCeEEEEe
Q 003821 151 -AMGIHLFREAKEMGLVGPDSVWVIA 175 (793)
Q Consensus 151 -~~~~~~l~~a~~~g~~~~~~~wi~~ 175 (793)
+....++.........++....+.+
T Consensus 335 ~p~~~~~l~~l~~~~~~~K~~~~FGS 360 (410)
T 4dik_A 335 HPLMRFTLLEIIDKANYEKPVLVFGV 360 (410)
T ss_dssp CHHHHHHHHHHHHHCCCCCEEEEEEE
T ss_pred CHHHHHHHHHHHhcccCCCEEEEEEC
Confidence 4566677777777777664444444
No 251
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=36.07 E-value=1.2e+02 Score=25.18 Aligned_cols=59 Identities=15% Similarity=0.119 Sum_probs=36.8
Q ss_pred cccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcCCceEEEEeccCh-------HHHHHHHHHHHHcC
Q 003821 92 TGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRTESRVFIILQSSL-------AMGIHLFREAKEMG 164 (793)
Q Consensus 92 ~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivvl~~~~-------~~~~~~l~~a~~~g 164 (793)
......++..++..|.++... .. ....+..+.+..++++++ +... .....++++.++..
T Consensus 13 ~~~~~~l~~~L~~~g~~v~~~---~~----------~~~a~~~l~~~~~dlvi~-d~~~~~~~~~~~~g~~~~~~l~~~~ 78 (140)
T 2qr3_A 13 KGVLTAVQLLLKNHFSKVITL---SS----------PVSLSTVLREENPEVVLL-DMNFTSGINNGNEGLFWLHEIKRQY 78 (140)
T ss_dssp HHHHHHHHHHHTTTSSEEEEE---CC----------HHHHHHHHHHSCEEEEEE-ETTTTC-----CCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCCcEEEEe---CC----------HHHHHHHHHcCCCCEEEE-eCCcCCCCCCCccHHHHHHHHHhhC
Confidence 335677888888888765421 11 233455556667888887 6553 25667777777754
No 252
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*
Probab=35.55 E-value=71 Score=32.15 Aligned_cols=83 Identities=13% Similarity=0.120 Sum_probs=51.6
Q ss_pred eEEEEEEEc---CCCccccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcCCceEEEEeccChHHH
Q 003821 77 RKVIIIYED---DATNADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRTESRVFIILQSSLAMG 153 (793)
Q Consensus 77 ~~vaii~~d---d~~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivvl~~~~~~~ 153 (793)
++|+++..+ +.|. ......+++.+++.|..+.....-.... +........+..+.+.+.|.||+ .......
T Consensus 44 ~~Igvi~~~~~~~~~~--~~~~~gi~~~a~~~g~~~~~~~~~~~~~---~~~~~~~~~i~~l~~~~vdgiIi-~~~~~~~ 117 (342)
T 1jx6_A 44 IKISVVYPGQQVSDYW--VRNIASFEKRLYKLNINYQLNQVFTRPN---ADIKQQSLSLMEALKSKSDYLIF-TLDTTRH 117 (342)
T ss_dssp EEEEEEECCCSSCCHH--HHHHHHHHHHHHHTTCCEEEEEEECCTT---CCHHHHHHHHHHHHHTTCSEEEE-CCSSSTT
T ss_pred eEEEEEecCCcccHHH--HHHHHHHHHHHHHcCCeEEEEecCCCCc---cCHHHHHHHHHHHHhcCCCEEEE-eCChHhH
Confidence 478888865 3455 6788889999999998765432111100 01133445677777778999888 5554433
Q ss_pred HHHHHHHHHcCC
Q 003821 154 IHLFREAKEMGL 165 (793)
Q Consensus 154 ~~~l~~a~~~g~ 165 (793)
...++++.+.|.
T Consensus 118 ~~~~~~~~~~~i 129 (342)
T 1jx6_A 118 RKFVEHVLDSTN 129 (342)
T ss_dssp HHHHHHHHHHCS
T ss_pred HHHHHHHHHcCC
Confidence 455666666664
No 253
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=35.48 E-value=77 Score=31.79 Aligned_cols=80 Identities=8% Similarity=-0.102 Sum_probs=50.9
Q ss_pred eEEEEEEEcC--CCccccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcCC--ceEEEEeccChHH
Q 003821 77 RKVIIIYEDD--ATNADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRTE--SRVFIILQSSLAM 152 (793)
Q Consensus 77 ~~vaii~~dd--~~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~--~~vivvl~~~~~~ 152 (793)
++|+++..+- .|. ......+++.+++.|.++.... ... ........+..+.+.+ .+.||+.....+.
T Consensus 6 ~~Igvi~~~~~~~~~--~~~~~gi~~~a~~~g~~l~~~~--~~~-----~~~~~~~~i~~l~~~~~~vdgiIi~~~~~~~ 76 (332)
T 2rjo_A 6 TTLACSFRSLTNPYY--TAFNKGAQSFAKSVGLPYVPLT--TEG-----SSEKGIADIRALLQKTGGNLVLNVDPNDSAD 76 (332)
T ss_dssp CEEEEEESCTTSHHH--HHHHHHHHHHHHHHTCCEEEEE--CTT-----CHHHHHHHHHHHHHHTTTCEEEEECCSSHHH
T ss_pred cEEEEEecCCCcHHH--HHHHHHHHHHHHHcCCEEEEec--CCC-----CHHHHHHHHHHHHHCCCCCCEEEEeCCCHHH
Confidence 4788888643 354 6778889999999998865431 111 1133445667777677 9998883333443
Q ss_pred HHHHHHHHHHcCC
Q 003821 153 GIHLFREAKEMGL 165 (793)
Q Consensus 153 ~~~~l~~a~~~g~ 165 (793)
....++.+.+.|+
T Consensus 77 ~~~~~~~~~~~~i 89 (332)
T 2rjo_A 77 ARVIVEACSKAGA 89 (332)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHCCC
Confidence 4466777777665
No 254
>1ta9_A Glycerol dehydrogenase; oxidoredu; 1.90A {Schizosaccharomyces pombe}
Probab=35.45 E-value=61 Score=34.53 Aligned_cols=84 Identities=8% Similarity=0.048 Sum_probs=54.8
Q ss_pred HHHHHHhhcCceEEEEEEEcCCCccccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcCCceEEEE
Q 003821 66 CTAALVGSYNWRKVIIIYEDDATNADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRTESRVFII 145 (793)
Q Consensus 66 ai~~ll~~~~w~~vaii~~dd~~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivv 145 (793)
.+.++++.+|-+++.||++...+ ....+.+.+.|++.|+++.. ..+.... +.+.+.+.+..+++ ++|+||.
T Consensus 81 ~l~~~l~~~g~~rvlIVtd~~~~---~~~~~~v~~~L~~~gi~~~~-~~~~ge~----~~~~v~~~~~~~~~-~~D~IIA 151 (450)
T 1ta9_A 81 RSYMYVKKWATKSAVVLADQNVW---NICANKIVDSLSQNGMTVTK-LVFGGEA----SLVELDKLRKQCPD-DTQVIIG 151 (450)
T ss_dssp GHHHHHTTTCSSEEEEEEEHHHH---HHTHHHHHHHHHHTTCEEEE-EEECSCC----CHHHHHHHHTTSCT-TCCEEEE
T ss_pred HHHHHHHhcCCCEEEEEECccHH---HHHHHHHHHHHHHCCCeEEE-EeeCCCC----CHHHHHHHHHHHhh-CCCEEEE
Confidence 45677777886699999887543 34678899999999988643 2333322 23456666666777 8999887
Q ss_pred ecc-ChHHHHHHHH
Q 003821 146 LQS-SLAMGIHLFR 158 (793)
Q Consensus 146 l~~-~~~~~~~~l~ 158 (793)
+.+ +.-++..++.
T Consensus 152 vGGGSviD~AK~iA 165 (450)
T 1ta9_A 152 VGGGKTMDSAKYIA 165 (450)
T ss_dssp EESHHHHHHHHHHH
T ss_pred eCCcHHHHHHHHHH
Confidence 333 2345555544
No 255
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=35.31 E-value=71 Score=31.11 Aligned_cols=80 Identities=9% Similarity=0.013 Sum_probs=48.4
Q ss_pred eEEEEEEEc--CCCccccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcCCceEEEEeccChHHHH
Q 003821 77 RKVIIIYED--DATNADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRTESRVFIILQSSLAMGI 154 (793)
Q Consensus 77 ~~vaii~~d--d~~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivvl~~~~~~~~ 154 (793)
+.|+++..+ +.|. ......+++.+++.|..+.... ...+ ...-...+..+.+.+.|.+|+.....+...
T Consensus 2 ~~Igvi~~~~~~~f~--~~~~~gi~~~~~~~g~~~~~~~--~~~~-----~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~ 72 (283)
T 2ioy_A 2 KTIGLVISTLNNPFF--VTLKNGAEEKAKELGYKIIVED--SQND-----SSKELSNVEDLIQQKVDVLLINPVDSDAVV 72 (283)
T ss_dssp CEEEEEESCSSSHHH--HHHHHHHHHHHHHHTCEEEEEE--CTTC-----HHHHHHHHHHHHHTTCSEEEECCSSTTTTH
T ss_pred eEEEEEecCCCCHHH--HHHHHHHHHHHHhcCcEEEEec--CCCC-----HHHHHHHHHHHHHcCCCEEEEeCCchhhhH
Confidence 367777764 2354 6778888888888898765331 1111 123345566777778888887222333333
Q ss_pred HHHHHHHHcCC
Q 003821 155 HLFREAKEMGL 165 (793)
Q Consensus 155 ~~l~~a~~~g~ 165 (793)
..++.+.+.|+
T Consensus 73 ~~~~~~~~~~i 83 (283)
T 2ioy_A 73 TAIKEANSKNI 83 (283)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHCCC
Confidence 45677777665
No 256
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=34.64 E-value=95 Score=26.60 Aligned_cols=59 Identities=14% Similarity=0.025 Sum_probs=36.8
Q ss_pred cccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcCCceEEEEeccCh--HHHHHHHHHHHHcC
Q 003821 92 TGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRTESRVFIILQSSL--AMGIHLFREAKEMG 164 (793)
Q Consensus 92 ~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivvl~~~~--~~~~~~l~~a~~~g 164 (793)
......+...++..|.++... . +....+..+.+..++++++ +... .+...++++.++..
T Consensus 17 ~~~~~~l~~~L~~~g~~v~~~---~----------~~~~a~~~l~~~~~dlvi~-d~~l~~~~g~~~~~~l~~~~ 77 (154)
T 2rjn_A 17 QPILNSLKRLIKRLGCNIITF---T----------SPLDALEALKGTSVQLVIS-DMRMPEMGGEVFLEQVAKSY 77 (154)
T ss_dssp HHHHHHHHHHHHTTTCEEEEE---S----------CHHHHHHHHTTSCCSEEEE-ESSCSSSCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCeEEEe---C----------CHHHHHHHHhcCCCCEEEE-ecCCCCCCHHHHHHHHHHhC
Confidence 335677888888888765421 1 1234555666667888887 6543 24667777777754
No 257
>3fxq_A LYSR type regulator of TSAMBCD; transcriptional regulator, LTTR, TSAR, WHTH, DNA- transcription, transcription regulation; 1.85A {Comamonas testosteroni} PDB: 3fxr_A* 3fxu_A* 3fzj_A 3n6t_A 3n6u_A*
Probab=34.50 E-value=2.7e+02 Score=26.97 Aligned_cols=104 Identities=10% Similarity=0.053 Sum_probs=55.4
Q ss_pred CChHHhhhCCCccccc-----CchHHHHHHHhhcCC-CCccccccCCHHHHHHHhhcCceEEEEechhhHHHHHhccCCc
Q 003821 547 TDIGWLKASNLNVGFD-----GDSFVRNYLENVLGF-KPENILKVDHEYKYITDFESNRIAAAFLELSYERAFLSQHCKE 620 (793)
Q Consensus 547 ~sl~dL~~~~~~~g~~-----~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~c~~ 620 (793)
.+++||. +.++... .......++... +. ........++.......+..|..-+++-+. ....... ...
T Consensus 182 ~~~~dL~--~~~~i~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~v~~g~gia~lp~~-~~~~~~~--~~~ 255 (305)
T 3fxq_A 182 TRLAELQ--ECRWAFSSAPRGPGAIIRNAFARY-GLPEPKLGLVCESFLALPGVVAHSDLLTTMPRT-LYERNAF--KDQ 255 (305)
T ss_dssp CSGGGGT--TSEEEEECCTTSTTHHHHHHHHHT-TCCCCEEEEEECCTTTHHHHHHTSSCEEEEEHH-HHHSSTT--GGG
T ss_pred CCHHHHh--CCCeEeeCCCCCHHHHHHHHHHHc-CCCCCCceEEeCCHHHHHHHHHhCCEEEEeeHH-HHhhhhh--cCC
Confidence 3678887 3444321 112344455443 23 222334567788888889988765555433 2221111 112
Q ss_pred eEEeC--ccccccceEEEecCCCcChHHHHHHHHhhhc
Q 003821 621 YTATI--PTYRFGGFAFVFQKGSPLAADFSEAILKLSE 656 (793)
Q Consensus 621 ~~~~~--~~~~~~~~~~~~~k~spl~~~in~~i~~l~e 656 (793)
+..+. .......++++.+++.+....+...+..+.+
T Consensus 256 L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~l~~ 293 (305)
T 3fxq_A 256 LCSIPLQDALPNPTIYVLRRHDLPVTPAAAGLIRWIQH 293 (305)
T ss_dssp EEECCCSSCCCCCEEEEEEETTSCCCHHHHHHHHHHHH
T ss_pred EEEeeCCCCCCCCceEEEEeCCCCCCHHHHHHHHHHHH
Confidence 44332 2233456788889988777777666665544
No 258
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=34.40 E-value=80 Score=28.14 Aligned_cols=62 Identities=13% Similarity=0.111 Sum_probs=42.2
Q ss_pred EEEEEEEcCC--Ccc-ccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcC-CceEEEE
Q 003821 78 KVIIIYEDDA--TNA-DTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRT-ESRVFII 145 (793)
Q Consensus 78 ~vaii~~dd~--~G~-~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-~~~vivv 145 (793)
+|+||...|+ .|- .......+.+.+++.|.++.....++... +.+.+.+.+..+. .+|+||.
T Consensus 3 ~v~Ii~tGdEl~~G~i~D~n~~~l~~~l~~~G~~v~~~~iv~Dd~------~~i~~~l~~~~~~~~~DlVit 68 (164)
T 2is8_A 3 RVGILTVSDKGFRGERQDTTHLAIREVLAGGPFEVAAYELVPDEP------PMIKKVLRLWADREGLDLILT 68 (164)
T ss_dssp EEEEEEECHHHHHTSSCCCHHHHHHHHHTTSSEEEEEEEEECSCH------HHHHHHHHHHHHTSCCSEEEE
T ss_pred EEEEEEEcCcccCCCcccchHHHHHHHHHHCCCeEeEEEEcCCCH------HHHHHHHHHHHhcCCCCEEEE
Confidence 6777776554 110 13356778889999999887766665433 6788888877654 6898887
No 259
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=34.38 E-value=1.6e+02 Score=23.97 Aligned_cols=59 Identities=14% Similarity=0.049 Sum_probs=37.8
Q ss_pred ccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcCCceEEEEeccCh--HHHHHHHHHHHHcCC
Q 003821 93 GNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRTESRVFIILQSSL--AMGIHLFREAKEMGL 165 (793)
Q Consensus 93 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivvl~~~~--~~~~~~l~~a~~~g~ 165 (793)
.....+.+.+++.|..+.. .. +....+..+.+..++++++ +... .+...++++.++.+-
T Consensus 18 ~~~~~l~~~L~~~g~~v~~---~~----------~~~~a~~~l~~~~~dlvi~-d~~l~~~~g~~~~~~l~~~~~ 78 (130)
T 3eod_A 18 VFRSLLDSWFSSLGATTVL---AA----------DGVDALELLGGFTPDLMIC-DIAMPRMNGLKLLEHIRNRGD 78 (130)
T ss_dssp HHHHHHHHHHHHTTCEEEE---ES----------CHHHHHHHHTTCCCSEEEE-CCC-----CHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCceEEE---eC----------CHHHHHHHHhcCCCCEEEE-ecCCCCCCHHHHHHHHHhcCC
Confidence 3477888888888876542 11 1234556667778999888 6653 345678888887654
No 260
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=34.20 E-value=1.1e+02 Score=30.36 Aligned_cols=81 Identities=12% Similarity=0.042 Sum_probs=50.0
Q ss_pred ceEEEEEEEcCC-CccccccHHHHHHHHHhc-CceeeEEeecCCCCCCCCChHHHHHHHHHhhcCCceEEEEeccChHHH
Q 003821 76 WRKVIIIYEDDA-TNADTGNLALLSEALQIS-NSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRTESRVFIILQSSLAMG 153 (793)
Q Consensus 76 w~~vaii~~dd~-~G~~~~~~~~l~~~l~~~-g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivvl~~~~~~~ 153 (793)
-.+|+++..+++ |. ......+++.+++. |.++.... ...+ .......+..+.+.+.|.+|+.....+..
T Consensus 6 ~~~Igvi~~~~~~~~--~~~~~gi~~~a~~~~g~~l~i~~--~~~~-----~~~~~~~i~~l~~~~vdgiIi~~~~~~~~ 76 (325)
T 2x7x_A 6 HFRIGVAQCSDDSWR--HKMNDEILREAMFYNGVSVEIRS--AGDD-----NSKQAEDVHYFMDEGVDLLIISANEAAPM 76 (325)
T ss_dssp CCEEEEEESCCSHHH--HHHHHHHHHHHTTSSSCEEEEEE--CTTC-----HHHHHHHHHHHHHTTCSEEEECCSSHHHH
T ss_pred CeEEEEEecCCCHHH--HHHHHHHHHHHHHcCCcEEEEeC--CCCC-----HHHHHHHHHHHHHcCCCEEEEeCCCHHHH
Confidence 357888876532 43 56778888888888 88765331 1111 13344566777777899988833333333
Q ss_pred HHHHHHHHHcCC
Q 003821 154 IHLFREAKEMGL 165 (793)
Q Consensus 154 ~~~l~~a~~~g~ 165 (793)
...++++.+.|+
T Consensus 77 ~~~~~~~~~~~i 88 (325)
T 2x7x_A 77 TPIVEEAYQKGI 88 (325)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHCCC
Confidence 456777777665
No 261
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=34.13 E-value=89 Score=28.19 Aligned_cols=62 Identities=13% Similarity=0.076 Sum_probs=39.9
Q ss_pred EEEEEEEcCC-C------cc-ccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhc-CCceEEEE
Q 003821 78 KVIIIYEDDA-T------NA-DTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLR-TESRVFII 145 (793)
Q Consensus 78 ~vaii~~dd~-~------G~-~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~-~~~~vivv 145 (793)
+|+||...|. + |. .......+.+.|++.|.++.....++... +.+...+....+ ..+|+||.
T Consensus 17 ~v~iitvsd~~~~~~~~~g~i~D~ng~~L~~~L~~~G~~v~~~~iV~Dd~------~~i~~al~~~~a~~~~DlVit 87 (178)
T 3iwt_A 17 NFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIENGHKIIGYSLVPDDK------IKILKAFTDALSIDEVDVIIS 87 (178)
T ss_dssp EEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHTTCEEEEEEEECSCH------HHHHHHHHHHHTCTTCCEEEE
T ss_pred EEEEEEEcCCCccccccCCCCCcchHHHHHHHHHHCCCEEEEEEEeCCCH------HHHHHHHHHHHhcCCCCEEEe
Confidence 6788876541 0 10 01234678889999999988776666433 567777766544 46888887
No 262
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=34.12 E-value=2e+02 Score=23.81 Aligned_cols=58 Identities=12% Similarity=-0.039 Sum_probs=38.4
Q ss_pred cccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcCCceEEEEeccCh--HHHHHHHHHHHHc
Q 003821 92 TGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRTESRVFIILQSSL--AMGIHLFREAKEM 163 (793)
Q Consensus 92 ~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivvl~~~~--~~~~~~l~~a~~~ 163 (793)
......+...|+..|.++... . +....+..+.+..++++++ +... .+...++++.++.
T Consensus 17 ~~~~~~l~~~L~~~g~~v~~~---~----------~~~~a~~~l~~~~~dlii~-d~~l~~~~g~~~~~~l~~~ 76 (142)
T 3cg4_A 17 AHVRIAVKTILSDAGFHIISA---D----------SGGQCIDLLKKGFSGVVLL-DIMMPGMDGWDTIRAILDN 76 (142)
T ss_dssp HHHHHHHHHHHHHTTCEEEEE---S----------SHHHHHHHHHTCCCEEEEE-ESCCSSSCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCCeEEEEe---C----------CHHHHHHHHHhcCCCEEEE-eCCCCCCCHHHHHHHHHhh
Confidence 345788888888888764321 1 1234556666678999888 6543 3567788888873
No 263
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=34.08 E-value=1.7e+02 Score=25.00 Aligned_cols=61 Identities=11% Similarity=0.084 Sum_probs=35.1
Q ss_pred cccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcC--CceEEEEeccCh--HHHHHHHHHHHHcCC
Q 003821 92 TGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRT--ESRVFIILQSSL--AMGIHLFREAKEMGL 165 (793)
Q Consensus 92 ~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~vivvl~~~~--~~~~~~l~~a~~~g~ 165 (793)
......++..|++.|..+... .. +....+..+.+. .+++||+ +... .+...++++.++..-
T Consensus 46 ~~~~~~l~~~L~~~g~~v~~~--~~----------~~~~al~~l~~~~~~~dliil-D~~l~~~~g~~~~~~lr~~~~ 110 (157)
T 3hzh_A 46 VFTVKQLTQIFTSEGFNIIDT--AA----------DGEEAVIKYKNHYPNIDIVTL-XITMPKMDGITCLSNIMEFDK 110 (157)
T ss_dssp HHHHHHHHHHHHHTTCEEEEE--ES----------SHHHHHHHHHHHGGGCCEEEE-CSSCSSSCHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhCCCeEEEE--EC----------CHHHHHHHHHhcCCCCCEEEE-eccCCCccHHHHHHHHHhhCC
Confidence 335677777887777765322 11 122334444444 5788777 6542 346677777777654
No 264
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=33.30 E-value=96 Score=28.34 Aligned_cols=63 Identities=10% Similarity=0.109 Sum_probs=43.3
Q ss_pred eEEEEEEEcCC--CccccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcCCceEEEE
Q 003821 77 RKVIIIYEDDA--TNADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRTESRVFII 145 (793)
Q Consensus 77 ~~vaii~~dd~--~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivv 145 (793)
-+|+||...|+ .|-.......+...+++.|.++.....++... +.+.+.+.+..+.++|+||.
T Consensus 31 ~rvaIistGdEl~~G~~Dsn~~~L~~~L~~~G~~v~~~~iv~Dd~------~~I~~al~~a~~~~~DlVIt 95 (185)
T 3rfq_A 31 GRALVVVVDDRTAHGDEDHSGPLVTELLTEAGFVVDGVVAVEADE------VDIRNALNTAVIGGVDLVVS 95 (185)
T ss_dssp EEEEEEEECHHHHTTCCCSHHHHHHHHHHHTTEEEEEEEEECSCH------HHHHHHHHHHHHTTCSEEEE
T ss_pred CEEEEEEECcccCCCCcCcHHHHHHHHHHHCCCEEEEEEEeCCCH------HHHHHHHHHHHhCCCCEEEE
Confidence 47888877654 12114456778888999999887766665433 66777777765457898887
No 265
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0
Probab=33.23 E-value=2.3e+02 Score=27.61 Aligned_cols=88 Identities=14% Similarity=0.098 Sum_probs=59.4
Q ss_pred HHHHHHHhhcCceEEEEEEEcCCCccccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcCCceEEE
Q 003821 65 TCTAALVGSYNWRKVIIIYEDDATNADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRTESRVFI 144 (793)
Q Consensus 65 ~ai~~ll~~~~w~~vaii~~dd~~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv 144 (793)
..+|......|-..+.++.+...|+ +..+.++..-+..++.|...-.+. |+ + ++...+..++|.|+
T Consensus 82 ~~~A~~y~~~GA~~IsVltd~~~f~---Gs~~~L~~ir~~v~lPVl~Kdfi~------d~---~--qi~ea~~~GAD~Vl 147 (272)
T 3tsm_A 82 PALAKAYEEGGAACLSVLTDTPSFQ---GAPEFLTAARQACSLPALRKDFLF------DP---Y--QVYEARSWGADCIL 147 (272)
T ss_dssp HHHHHHHHHTTCSEEEEECCSTTTC---CCHHHHHHHHHTSSSCEEEESCCC------ST---H--HHHHHHHTTCSEEE
T ss_pred HHHHHHHHHCCCCEEEEeccccccC---CCHHHHHHHHHhcCCCEEECCccC------CH---H--HHHHHHHcCCCEEE
Confidence 5567777778999999998777763 456666666556677664332111 11 1 46667788999988
Q ss_pred Eecc--ChHHHHHHHHHHHHcCCC
Q 003821 145 ILQS--SLAMGIHLFREAKEMGLV 166 (793)
Q Consensus 145 vl~~--~~~~~~~~l~~a~~~g~~ 166 (793)
+... ..++...+++.++++||.
T Consensus 148 Li~a~L~~~~l~~l~~~a~~lGl~ 171 (272)
T 3tsm_A 148 IIMASVDDDLAKELEDTAFALGMD 171 (272)
T ss_dssp EETTTSCHHHHHHHHHHHHHTTCE
T ss_pred EcccccCHHHHHHHHHHHHHcCCe
Confidence 7322 245678899999999983
No 266
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=32.96 E-value=1.4e+02 Score=26.66 Aligned_cols=66 Identities=14% Similarity=0.113 Sum_probs=44.8
Q ss_pred cCceEEEEEEEcCCCcc-ccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhc-CCceEEEE
Q 003821 74 YNWRKVIIIYEDDATNA-DTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLR-TESRVFII 145 (793)
Q Consensus 74 ~~w~~vaii~~dd~~G~-~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~-~~~~vivv 145 (793)
|.--+++||...|+-|- .......+.+.+++.|.++.....++... +.+.+.+.+..+ ..+|+||.
T Consensus 11 ~~~~rv~Ii~tGdElg~i~Dsn~~~l~~~L~~~G~~v~~~~iv~Dd~------~~i~~~l~~~~~~~~~DlVit 78 (169)
T 1y5e_A 11 PKEVRCKIVTISDTRTEETDKSGQLLHELLKEAGHKVTSYEIVKDDK------ESIQQAVLAGYHKEDVDVVLT 78 (169)
T ss_dssp -CCCEEEEEEECSSCCTTTCHHHHHHHHHHHHHTCEEEEEEEECSSH------HHHHHHHHHHHTCTTCSEEEE
T ss_pred ccCCEEEEEEEcCccCeeccChHHHHHHHHHHCCCeEeEEEEeCCCH------HHHHHHHHHHHhcCCCCEEEE
Confidence 33458899887776431 13346778888999999887766665433 667788877665 36898887
No 267
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=32.92 E-value=1.2e+02 Score=27.36 Aligned_cols=66 Identities=12% Similarity=0.024 Sum_probs=44.0
Q ss_pred cCceEEEEEEEcCC-C------c-cccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcC-CceEEE
Q 003821 74 YNWRKVIIIYEDDA-T------N-ADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRT-ESRVFI 144 (793)
Q Consensus 74 ~~w~~vaii~~dd~-~------G-~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-~~~viv 144 (793)
+.--+|+||...|+ + | -.......+...+++.|.++.....++... +.+.+.+.+..+. ++|+||
T Consensus 13 ~~~~rv~IittGde~~~~~~~~G~i~Dsn~~~L~~~l~~~G~~v~~~~iv~Dd~------~~I~~al~~a~~~~~~DlVi 86 (178)
T 2pjk_A 13 PKSLNFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIENGHKIIGYSLVPDDK------IKILKAFTDALSIDEVDVII 86 (178)
T ss_dssp CCCCEEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHTTCEEEEEEEECSCH------HHHHHHHHHHHTCTTCCEEE
T ss_pred CCCCEEEEEEeCcccccccccCCeEeehHHHHHHHHHHHCCCEEEEEEEeCCCH------HHHHHHHHHHHhcCCCCEEE
Confidence 34457888887752 1 2 013456778888999999887665555433 6677787776554 589888
Q ss_pred E
Q 003821 145 I 145 (793)
Q Consensus 145 v 145 (793)
.
T Consensus 87 t 87 (178)
T 2pjk_A 87 S 87 (178)
T ss_dssp E
T ss_pred E
Confidence 7
No 268
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=32.77 E-value=1.8e+02 Score=24.12 Aligned_cols=60 Identities=15% Similarity=0.111 Sum_probs=39.2
Q ss_pred cccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcCCceEEEEecc-ChHHHHHHHHHHHHcCC
Q 003821 92 TGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRTESRVFIILQS-SLAMGIHLFREAKEMGL 165 (793)
Q Consensus 92 ~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivvl~~-~~~~~~~~l~~a~~~g~ 165 (793)
......+...++..|.++... . +....+..+.+..++++++ +. .......++++.++..-
T Consensus 14 ~~~~~~l~~~L~~~g~~v~~~---~----------~~~~a~~~l~~~~~dlvi~-d~~~~~~g~~~~~~l~~~~~ 74 (142)
T 2qxy_A 14 RITFLAVKNALEKDGFNVIWA---K----------NEQEAFTFLRREKIDLVFV-DVFEGEESLNLIRRIREEFP 74 (142)
T ss_dssp HHHHHHHHHHHGGGTCEEEEE---S----------SHHHHHHHHTTSCCSEEEE-ECTTTHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhCCCEEEEE---C----------CHHHHHHHHhccCCCEEEE-eCCCCCcHHHHHHHHHHHCC
Confidence 345778888898888865421 1 1334566677778999888 65 22356677888887643
No 269
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=32.64 E-value=2.1e+02 Score=23.52 Aligned_cols=58 Identities=17% Similarity=0.082 Sum_probs=36.4
Q ss_pred ccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcCC-ceEEEEeccCh--HHHHHHHHHHHHcC
Q 003821 93 GNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRTE-SRVFIILQSSL--AMGIHLFREAKEMG 164 (793)
Q Consensus 93 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~-~~vivvl~~~~--~~~~~~l~~a~~~g 164 (793)
.....+++.+++.|.++... . +....+..+.... ++++++ +... .+...++++.++.+
T Consensus 18 ~~~~~l~~~L~~~g~~v~~~---~----------~~~~a~~~~~~~~~~dlvi~-D~~l~~~~g~~~~~~l~~~~ 78 (136)
T 3hdv_A 18 VNREALILYLKSRGIDAVGA---D----------GAEEARLYLHYQKRIGLMIT-DLRMQPESGLDLIRTIRASE 78 (136)
T ss_dssp HHHHHHHHHHHHTTCCEEEE---S----------SHHHHHHHHHHCTTEEEEEE-CSCCSSSCHHHHHHHHHTST
T ss_pred HHHHHHHHHHHHcCceEEEe---C----------CHHHHHHHHHhCCCCcEEEE-eccCCCCCHHHHHHHHHhcC
Confidence 35677888888888765432 1 1223444555455 888887 6542 35677888888764
No 270
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=32.23 E-value=99 Score=31.02 Aligned_cols=85 Identities=6% Similarity=-0.063 Sum_probs=52.7
Q ss_pred HhhcCceEEEEEEEc----CCCccccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcCCceEEEEe
Q 003821 71 VGSYNWRKVIIIYED----DATNADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRTESRVFIIL 146 (793)
Q Consensus 71 l~~~~w~~vaii~~d----d~~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivvl 146 (793)
++.-.-+.|+++..+ +.|. ......+++.+++.|..+.... ...+ .......+..+.+.+.|.+|+
T Consensus 56 l~~~~~~~Igvi~~~~~~~~~~~--~~~~~gi~~~a~~~g~~~~~~~--~~~~-----~~~~~~~~~~l~~~~vdgiIi- 125 (338)
T 3dbi_A 56 LSAKSTQTLGLVVTNTLYHGIYF--SELLFHAARMAEEKGRQLLLAD--GKHS-----AEEERQAIQYLLDLRCDAIMI- 125 (338)
T ss_dssp ----CCSEEEEEECTTTTSTTHH--HHHHHHHHHHHHHTTCEEEEEE--CTTS-----HHHHHHHHHHHHHTTCSEEEE-
T ss_pred hhhCCCCEEEEEecCCcccChhH--HHHHHHHHHHHHHCCCEEEEEe--CCCC-----hHHHHHHHHHHHhCCCCEEEE-
Confidence 333345689999876 2354 7788889999999998865432 1111 133445667777789999988
Q ss_pred ccChHHHHHHHHHHHHcCC
Q 003821 147 QSSLAMGIHLFREAKEMGL 165 (793)
Q Consensus 147 ~~~~~~~~~~l~~a~~~g~ 165 (793)
.........+.+.+.+.++
T Consensus 126 ~~~~~~~~~~~~~~~~~~i 144 (338)
T 3dbi_A 126 YPRFLSVDEIDDIIDAHSQ 144 (338)
T ss_dssp CCSSSCHHHHHHHHHHCSS
T ss_pred eCCCCChHHHHHHHHcCCC
Confidence 4433333445566666664
No 271
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=31.99 E-value=92 Score=30.02 Aligned_cols=80 Identities=4% Similarity=-0.078 Sum_probs=48.4
Q ss_pred eEEEEEEEcC--CCccccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcCCceEEEEeccChHHHH
Q 003821 77 RKVIIIYEDD--ATNADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRTESRVFIILQSSLAMGI 154 (793)
Q Consensus 77 ~~vaii~~dd--~~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivvl~~~~~~~~ 154 (793)
+.|+++..+- .|. ......+++.+++.|.++.... ...+ ...-...+..+.+.+.|.+|+.....+...
T Consensus 2 ~~Igvi~~~~~~~f~--~~~~~gi~~~~~~~g~~~~~~~--~~~~-----~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~ 72 (271)
T 2dri_A 2 DTIALVVSTLNNPFF--VSLKDGAQKEADKLGYNLVVLD--SQNN-----PAKELANVQDLTVRGTKILLINPTDSDAVG 72 (271)
T ss_dssp CEEEEEESCSSSHHH--HHHHHHHHHHHHHHTCEEEEEE--CTTC-----HHHHHHHHHHHTTTTEEEEEECCSSTTTTH
T ss_pred cEEEEEecCCCCHHH--HHHHHHHHHHHHHcCcEEEEeC--CCCC-----HHHHHHHHHHHHHcCCCEEEEeCCChHHHH
Confidence 4678887653 344 6778888889999998765421 1111 122344566777778898887222333333
Q ss_pred HHHHHHHHcCC
Q 003821 155 HLFREAKEMGL 165 (793)
Q Consensus 155 ~~l~~a~~~g~ 165 (793)
..++.+.+.|+
T Consensus 73 ~~~~~~~~~~i 83 (271)
T 2dri_A 73 NAVKMANQANI 83 (271)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHCCC
Confidence 45677777665
No 272
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=31.59 E-value=84 Score=30.60 Aligned_cols=80 Identities=6% Similarity=0.011 Sum_probs=48.8
Q ss_pred CceEEEEEEEc----CCCccccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcCCceEEEEeccCh
Q 003821 75 NWRKVIIIYED----DATNADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRTESRVFIILQSSL 150 (793)
Q Consensus 75 ~w~~vaii~~d----d~~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivvl~~~~ 150 (793)
.=.+|+++..+ +.|. ......+++.+++.|.++... .... ........+..+.+.+.+.+|+.....
T Consensus 18 ~~~~Ig~i~~~~~~~~~~~--~~~~~gi~~~~~~~g~~~~~~---~~~~----~~~~~~~~~~~l~~~~vdgii~~~~~~ 88 (296)
T 3brq_A 18 STQTLGLVVTNTLYHGIYF--SELLFHAARMAEEKGRQLLLA---DGKH----SAEEERQAIQYLLDLRCDAIMIYPRFL 88 (296)
T ss_dssp -CCEEEEEECGGGCC--CH--HHHHHHHHHHHHHTTCEEEEE---CCTT----SHHHHHHHHHHHHHTTCSEEEEECSSS
T ss_pred CCceEEEEeCCcccCCchH--HHHHHHHHHHHHHCCCEEEEE---eCCC----CHHHHHHHHHHHHhcCCCEEEEecCCC
Confidence 34578998865 3466 778889999999999876532 2111 113345567777777899888733322
Q ss_pred HHHHHHHHHHHH-cCC
Q 003821 151 AMGIHLFREAKE-MGL 165 (793)
Q Consensus 151 ~~~~~~l~~a~~-~g~ 165 (793)
+. ..++.+.+ .|+
T Consensus 89 ~~--~~~~~l~~~~~i 102 (296)
T 3brq_A 89 SV--DEIDDIIDAHSQ 102 (296)
T ss_dssp CH--HHHHHHHHTCSS
T ss_pred Ch--HHHHHHHhcCCC
Confidence 22 34556666 554
No 273
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=30.89 E-value=91 Score=30.69 Aligned_cols=84 Identities=11% Similarity=0.030 Sum_probs=49.1
Q ss_pred HhhcCceEEEEEEEcC--CCccccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcCCceEEEEecc
Q 003821 71 VGSYNWRKVIIIYEDD--ATNADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRTESRVFIILQS 148 (793)
Q Consensus 71 l~~~~w~~vaii~~dd--~~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivvl~~ 148 (793)
++.-+=+.|+++..+. .|. ..+...+++.+++.|..+.... .... . ......+..+.+.+.|.+|+ ..
T Consensus 10 L~~~~s~~Igvi~~~~~~~~~--~~~~~gi~~~a~~~g~~~~~~~-~~~~-----~-~~~~~~~~~l~~~~vdgiI~-~~ 79 (303)
T 3kke_A 10 LRHSRSGTIGLIVPDVNNAVF--ADMFSGVQMAASGHSTDVLLGQ-IDAP-----P-RGTQQLSRLVSEGRVDGVLL-QR 79 (303)
T ss_dssp -------CEEEEESCTTSTTH--HHHHHHHHHHHHHTTCCEEEEE-CCST-----T-HHHHHHHHHHHSCSSSEEEE-CC
T ss_pred HhhCCCCEEEEEeCCCcChHH--HHHHHHHHHHHHHCCCEEEEEe-CCCC-----h-HHHHHHHHHHHhCCCcEEEE-ec
Confidence 3333445788888653 355 7788899999999998865431 1111 1 33456677788888999888 43
Q ss_pred ChHHHHHHHHHHHHcCC
Q 003821 149 SLAMGIHLFREAKEMGL 165 (793)
Q Consensus 149 ~~~~~~~~l~~a~~~g~ 165 (793)
........++.+.+ |+
T Consensus 80 ~~~~~~~~~~~l~~-~i 95 (303)
T 3kke_A 80 REDFDDDMLAAVLE-GV 95 (303)
T ss_dssp CTTCCHHHHHHHHT-TS
T ss_pred CCCCcHHHHHHHhC-CC
Confidence 32221115666666 65
No 274
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=30.82 E-value=1.2e+02 Score=25.16 Aligned_cols=58 Identities=16% Similarity=0.161 Sum_probs=36.4
Q ss_pred cccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcCCceEEEEeccCh--HHHHHHHHHHHHc
Q 003821 92 TGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRTESRVFIILQSSL--AMGIHLFREAKEM 163 (793)
Q Consensus 92 ~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivvl~~~~--~~~~~~l~~a~~~ 163 (793)
......+...+++.|..+... . +....+..+.+..++++|+ +... .+...++++.++.
T Consensus 16 ~~~~~~l~~~l~~~g~~v~~~---~----------~~~~a~~~l~~~~~dlvi~-d~~l~~~~g~~~~~~l~~~ 75 (140)
T 3grc_A 16 PDIARLLNLMLEKGGFDSDMV---H----------SAAQALEQVARRPYAAMTV-DLNLPDQDGVSLIRALRRD 75 (140)
T ss_dssp HHHHHHHHHHHHHTTCEEEEE---C----------SHHHHHHHHHHSCCSEEEE-CSCCSSSCHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHCCCeEEEE---C----------CHHHHHHHHHhCCCCEEEE-eCCCCCCCHHHHHHHHHhC
Confidence 334677888888888764321 1 1234455566678898887 6542 3566777777763
No 275
>3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus}
Probab=30.74 E-value=64 Score=33.13 Aligned_cols=76 Identities=13% Similarity=0.066 Sum_probs=48.8
Q ss_pred ceEEEEEEEcC----CCccccccHHHHHHHHHhcC--ceeeEEeecCCCCCCCCChHHHHHHHHHhhcCCceEEEEeccC
Q 003821 76 WRKVIIIYEDD----ATNADTGNLALLSEALQISN--SEIEYRLVLPPISYLTDPKQFLQEKLLKLLRTESRVFIILQSS 149 (793)
Q Consensus 76 w~~vaii~~dd----~~G~~~~~~~~l~~~l~~~g--~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivvl~~~ 149 (793)
=.+|++|+.++ .|- ....+.+++..++.| +++.+....+. ..+..+.++.+.+.+.|.||. ..
T Consensus 26 ~~kIglv~~g~i~D~~f~--~~~~~G~~~~~~~~G~~~~~~~~e~~~~-------~~d~~~~l~~l~~~g~d~Ii~--~g 94 (356)
T 3s99_A 26 KLKVGFIYIGPPGDFGWT--YQHDQARKELVEALGDKVETTFLENVAE-------GADAERSIKRIARAGNKLIFT--TS 94 (356)
T ss_dssp CEEEEEECSSCGGGSSHH--HHHHHHHHHHHHHHTTTEEEEEECSCCT-------THHHHHHHHHHHHTTCSEEEE--CS
T ss_pred CCEEEEEEccCCCchhHH--HHHHHHHHHHHHHhCCceEEEEEecCCC-------HHHHHHHHHHHHHCCCCEEEE--CC
Confidence 36899999642 243 666777888888888 66544322221 146778888888889998777 34
Q ss_pred hHHHHHHHHHHHH
Q 003821 150 LAMGIHLFREAKE 162 (793)
Q Consensus 150 ~~~~~~~l~~a~~ 162 (793)
......+.+.|.+
T Consensus 95 ~~~~~~~~~vA~~ 107 (356)
T 3s99_A 95 FGYMDPTVKVAKK 107 (356)
T ss_dssp GGGHHHHHHHHTT
T ss_pred HHHHHHHHHHHHH
Confidence 4444445555554
No 276
>4es6_A Uroporphyrinogen-III synthase; heme-biosynthesis, cytoplasmi; 2.22A {Pseudomonas aeruginosa}
Probab=30.28 E-value=48 Score=32.04 Aligned_cols=87 Identities=16% Similarity=0.072 Sum_probs=54.5
Q ss_pred HHHHHHHHHh-----hcCceEEEEEEEcCCCccccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhc
Q 003821 63 QITCTAALVG-----SYNWRKVIIIYEDDATNADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLR 137 (793)
Q Consensus 63 ~~~ai~~ll~-----~~~w~~vaii~~dd~~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 137 (793)
.++.+++.+. ...-++|.++..+.. .+.|.+.|++.|.++.....|.......+ ...+. ..+..
T Consensus 115 ~~e~L~~~l~~~~~~~~~~~~vL~~rg~~~-------r~~L~~~L~~~G~~v~~~~vY~~~~~~~~-~~~~~---~~l~~ 183 (254)
T 4es6_A 115 DSEALLALPAFQDSLRVHDPKVLIMRGEGG-------REFLAERLRGQGVQVDYLPLYRRRAPDYP-AGELL---ARVRA 183 (254)
T ss_dssp SHHHHHTCHHHHHHTCSSSCEEEEEECSSC-------CCHHHHHHHHTTCEEEEEECEEEECCCCC-TTHHH---HHHHH
T ss_pred CHHHHHHhHhhcccccCCCCEEEEEcCCcc-------HHHHHHHHHHCCCEEEEEeEEEeeCCCCC-HHHHH---HHHHh
Confidence 4677777664 344578877665432 45788889999998877766654321111 12232 33444
Q ss_pred CCceEEEEeccChHHHHHHHHHHHH
Q 003821 138 TESRVFIILQSSLAMGIHLFREAKE 162 (793)
Q Consensus 138 ~~~~vivvl~~~~~~~~~~l~~a~~ 162 (793)
...++|+ +.++..+..+++.+.+
T Consensus 184 ~~~d~v~--ftS~s~v~~~~~~~~~ 206 (254)
T 4es6_A 184 ERLNGLV--VSSGQGLQNLYQLAAA 206 (254)
T ss_dssp TTCCEEE--CCSHHHHHHHHHHHGG
T ss_pred CCCCEEE--EcCHHHHHHHHHHhhH
Confidence 5678755 4888888888887654
No 277
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=30.21 E-value=1.6e+02 Score=24.07 Aligned_cols=59 Identities=12% Similarity=0.030 Sum_probs=37.7
Q ss_pred cccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcC-CceEEEEeccCh---HHHHHHHHHHHHcC
Q 003821 92 TGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRT-ESRVFIILQSSL---AMGIHLFREAKEMG 164 (793)
Q Consensus 92 ~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-~~~vivvl~~~~---~~~~~~l~~a~~~g 164 (793)
......+...++..|..+.. ... ....+..+.+. .++++++ +... .+...++++.++..
T Consensus 15 ~~~~~~l~~~L~~~g~~v~~---~~~----------~~~a~~~l~~~~~~dlvi~-d~~l~~~~~g~~~~~~l~~~~ 77 (132)
T 2rdm_A 15 AILLLDFESTLTDAGFLVTA---VSS----------GAKAIEMLKSGAAIDGVVT-DIRFCQPPDGWQVARVAREID 77 (132)
T ss_dssp HHHHHHHHHHHHHTTCEEEE---ESS----------HHHHHHHHHTTCCCCEEEE-ESCCSSSSCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCEEEE---ECC----------HHHHHHHHHcCCCCCEEEE-eeeCCCCCCHHHHHHHHHhcC
Confidence 33567788888888876542 121 23345556665 7899887 6543 35677888888764
No 278
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=30.05 E-value=30 Score=33.94 Aligned_cols=82 Identities=12% Similarity=0.111 Sum_probs=43.0
Q ss_pred eEEEEEEEc----CCCccccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcCCceEEEEeccChHH
Q 003821 77 RKVIIIYED----DATNADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRTESRVFIILQSSLAM 152 (793)
Q Consensus 77 ~~vaii~~d----d~~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivvl~~~~~~ 152 (793)
++|+++..+ +.|. ......+++.+++.|.++... .... ........+.+..+.+.+.+.+|+.....+.
T Consensus 6 ~~Ig~v~~~~~~~~~~~--~~~~~gi~~~a~~~g~~~~~~---~~~~--~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~ 78 (289)
T 3brs_A 6 YYMICIPKVLDDSSDFW--SVLVEGAQMAAKEYEIKLEFM---APEK--EEDYLVQNELIEEAIKRKPDVILLAAADYEK 78 (289)
T ss_dssp CEEEEECSCCCSSSHHH--HHHHHHHHHHHHHHTCEEEEC---CCSS--TTCHHHHHHHHHHHHHTCCSEEEECCSCTTT
T ss_pred cEEEEEeCCCCCCchHH--HHHHHHHHHHHHHcCCEEEEe---cCCC--CCCHHHHHHHHHHHHHhCCCEEEEeCCChHH
Confidence 357777653 3354 667777788888888765422 1110 0011233445666666778877772233333
Q ss_pred HHHHHHHHHHcCC
Q 003821 153 GIHLFREAKEMGL 165 (793)
Q Consensus 153 ~~~~l~~a~~~g~ 165 (793)
....++++.+.|+
T Consensus 79 ~~~~~~~~~~~~i 91 (289)
T 3brs_A 79 TYDAAKEIKDAGI 91 (289)
T ss_dssp THHHHTTTGGGTC
T ss_pred hHHHHHHHHHCCC
Confidence 2344555555443
No 279
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=29.97 E-value=2e+02 Score=22.68 Aligned_cols=59 Identities=22% Similarity=0.249 Sum_probs=37.4
Q ss_pred cccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcCCceEEEEeccCh--HHHHHHHHHHHHcC
Q 003821 92 TGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRTESRVFIILQSSL--AMGIHLFREAKEMG 164 (793)
Q Consensus 92 ~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivvl~~~~--~~~~~~l~~a~~~g 164 (793)
......+...++..|..+.. ... ....+..+....++++++ +... .+...++++.++..
T Consensus 11 ~~~~~~l~~~l~~~~~~v~~---~~~----------~~~a~~~~~~~~~dlvl~-D~~l~~~~g~~~~~~l~~~~ 71 (116)
T 3a10_A 11 PNIRELLKEELQEEGYEIDT---AEN----------GEEALKKFFSGNYDLVIL-DIEMPGISGLEVAGEIRKKK 71 (116)
T ss_dssp HHHHHHHHHHHHHTTCEEEE---ESS----------HHHHHHHHHHSCCSEEEE-CSCCSSSCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCEEEE---eCC----------HHHHHHHHhcCCCCEEEE-ECCCCCCCHHHHHHHHHccC
Confidence 33567788888888876532 111 223455556668999888 6653 34667788877765
No 280
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=29.68 E-value=1.5e+02 Score=24.86 Aligned_cols=57 Identities=21% Similarity=0.224 Sum_probs=35.9
Q ss_pred ccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcCCceEEEEeccCh--HHHHHHHHHHHHc
Q 003821 93 GNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRTESRVFIILQSSL--AMGIHLFREAKEM 163 (793)
Q Consensus 93 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivvl~~~~--~~~~~~l~~a~~~ 163 (793)
.....+...|+..|..+.. ... ....+..+.+..++++|+ +... .+...++++.++.
T Consensus 19 ~~~~~l~~~L~~~g~~v~~---~~~----------~~~a~~~l~~~~~dlii~-d~~l~~~~g~~~~~~l~~~ 77 (147)
T 2zay_A 19 PALAASISALSQEGFDIIQ---CGN----------AIEAVPVAVKTHPHLIIT-EANMPKISGMDLFNSLKKN 77 (147)
T ss_dssp GGGHHHHHHHHHHTEEEEE---ESS----------HHHHHHHHHHHCCSEEEE-ESCCSSSCHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHcCCeEEE---eCC----------HHHHHHHHHcCCCCEEEE-cCCCCCCCHHHHHHHHHcC
Confidence 3467788888888876542 111 223445555567999888 6543 3567788888773
No 281
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=29.39 E-value=56 Score=31.94 Aligned_cols=80 Identities=5% Similarity=-0.002 Sum_probs=50.2
Q ss_pred CceEEEEEEEc-------CCCccccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcCCceEEEEec
Q 003821 75 NWRKVIIIYED-------DATNADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRTESRVFIILQ 147 (793)
Q Consensus 75 ~w~~vaii~~d-------d~~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivvl~ 147 (793)
+=++|+++..+ +.|. ..+...+++.+++.|..+... .... ........+..+.+.+.+.||+ .
T Consensus 7 ~~~~Igvi~~~~~~~~~~~~~~--~~~~~gi~~~a~~~g~~~~~~---~~~~----~~~~~~~~~~~~~~~~vdgiIi-~ 76 (292)
T 3k4h_A 7 TTKTLGLVMPSSASKAFQNPFF--PEVIRGISSFAHVEGYALYMS---TGET----EEEIFNGVVKMVQGRQIGGIIL-L 76 (292)
T ss_dssp CCCEEEEECSSCHHHHTTSTHH--HHHHHHHHHHHHHTTCEEEEC---CCCS----HHHHHHHHHHHHHTTCCCEEEE-S
T ss_pred CCCEEEEEecCCccccccCHHH--HHHHHHHHHHHHHcCCEEEEE---eCCC----CHHHHHHHHHHHHcCCCCEEEE-e
Confidence 34578888776 3355 778888899999999876432 2111 1123345566677778999888 4
Q ss_pred cChHHHHHHHHHHHHcCC
Q 003821 148 SSLAMGIHLFREAKEMGL 165 (793)
Q Consensus 148 ~~~~~~~~~l~~a~~~g~ 165 (793)
..... ...++.+.+.|+
T Consensus 77 ~~~~~-~~~~~~l~~~~i 93 (292)
T 3k4h_A 77 YSREN-DRIIQYLHEQNF 93 (292)
T ss_dssp CCBTT-CHHHHHHHHTTC
T ss_pred CCCCC-hHHHHHHHHCCC
Confidence 33222 246677777766
No 282
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=29.05 E-value=2.1e+02 Score=23.72 Aligned_cols=59 Identities=12% Similarity=-0.008 Sum_probs=37.2
Q ss_pred cccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcCCceEEEEeccCh--HHHHHHHHHHHHcC
Q 003821 92 TGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRTESRVFIILQSSL--AMGIHLFREAKEMG 164 (793)
Q Consensus 92 ~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivvl~~~~--~~~~~~l~~a~~~g 164 (793)
......+...++..|..+.. ... ....+..+....++++++ +... .+...++++.++..
T Consensus 13 ~~~~~~l~~~L~~~g~~v~~---~~~----------~~~al~~l~~~~~dlvi~-D~~l~~~~g~~~~~~l~~~~ 73 (138)
T 3c3m_A 13 PMIVDVFVTMLERGGYRPIT---AFS----------GEECLEALNATPPDLVLL-DIMMEPMDGWETLERIKTDP 73 (138)
T ss_dssp HHHHHHHHHHHHHTTCEEEE---ESS----------HHHHHHHHHHSCCSEEEE-ESCCSSSCHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCceEEE---eCC----------HHHHHHHHhccCCCEEEE-eCCCCCCCHHHHHHHHHcCc
Confidence 33567788888888876542 111 223445556667899887 6653 34677888887753
No 283
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=28.87 E-value=2.6e+02 Score=23.60 Aligned_cols=71 Identities=11% Similarity=0.037 Sum_probs=42.5
Q ss_pred cccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcCCceEEEEeccCh--HHHHHHHHHHHHcCCCCCC
Q 003821 92 TGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRTESRVFIILQSSL--AMGIHLFREAKEMGLVGPD 169 (793)
Q Consensus 92 ~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivvl~~~~--~~~~~~l~~a~~~g~~~~~ 169 (793)
......++..|++.|.+++... . +-...+..+++..+|+|++ +..- -+...++++.++..-...-
T Consensus 22 ~~~r~~l~~~L~~~G~~~v~~a--~----------~g~~al~~~~~~~~Dlill-D~~MP~mdG~el~~~ir~~~~~~~i 88 (134)
T 3to5_A 22 STMRRIVKNLLRDLGFNNTQEA--D----------DGLTALPMLKKGDFDFVVT-DWNMPGMQGIDLLKNIRADEELKHL 88 (134)
T ss_dssp HHHHHHHHHHHHHTTCCCEEEE--S----------SHHHHHHHHHHHCCSEEEE-ESCCSSSCHHHHHHHHHHSTTTTTC
T ss_pred HHHHHHHHHHHHHcCCcEEEEE--C----------CHHHHHHHHHhCCCCEEEE-cCCCCCCCHHHHHHHHHhCCCCCCC
Confidence 3457788888888887643221 1 1223455666678998887 6653 3567788888765433222
Q ss_pred eEEEEe
Q 003821 170 SVWVIA 175 (793)
Q Consensus 170 ~~wi~~ 175 (793)
-+-++|
T Consensus 89 pvI~lT 94 (134)
T 3to5_A 89 PVLMIT 94 (134)
T ss_dssp CEEEEE
T ss_pred eEEEEE
Confidence 244555
No 284
>2eq5_A 228AA long hypothetical hydantoin racemase; structural genomics, NPPSFA, national project on P structural and functional analyses; 2.20A {Pyrococcus horikoshii}
Probab=28.85 E-value=49 Score=31.34 Aligned_cols=118 Identities=15% Similarity=0.109 Sum_probs=0.0
Q ss_pred CcccceEEEEcCCChhhHHHHHHhccCCCccEEeeeCCCCCCCCCCCCCCeEEEecCChHHHHHHHHHHHhhcCceEEEE
Q 003821 2 IKEKEVKVIVGMETWGAATMVADIGSRAQVPVLSFAEPAIAPPLTSTRWPFLVRMANSSAEQITCTAALVGSYNWRKVII 81 (793)
Q Consensus 2 i~~~~V~aiiGp~~s~~~~~va~i~~~~~iP~Is~~~~~~~~~l~~~~~~~~~r~~p~~~~~~~ai~~ll~~~~w~~vai 81 (793)
+.+.|+.+|+-+-++. ..+..+-+..++|++. ..++.++.+...+ ++|+|
T Consensus 71 l~~~g~d~iviaCnta--~~~~~l~~~~~iPvi~---------------------------i~~~~~~~a~~~~-~rigV 120 (228)
T 2eq5_A 71 FEREGVDAIIISCAAD--PAVEKVRKLLSIPVIG---------------------------AGSSVSALALAYG-RRVGV 120 (228)
T ss_dssp HHHTTCSEEEECSTTC--TTHHHHHHHCSSCEEE---------------------------HHHHHHHHHHTTC-SSEEE
T ss_pred HHHCCCCEEEEeCCch--HHHHHHHHhCCCCEeC---------------------------ccHHHHHHHHHhC-CeEEE
Q ss_pred EEEcCCCccccccHHHHHHHH-HhcCceeeE-------EeecCCCCCCCCChHHHHHHHHHhhcCCceEEEEeccChHHH
Q 003821 82 IYEDDATNADTGNLALLSEAL-QISNSEIEY-------RLVLPPISYLTDPKQFLQEKLLKLLRTESRVFIILQSSLAMG 153 (793)
Q Consensus 82 i~~dd~~G~~~~~~~~l~~~l-~~~g~~v~~-------~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivvl~~~~~~~ 153 (793)
+....... ..+++.+ ++.|.++.. ...-+... ..+.+.+.++.+.++|+||+ .|..-.+
T Consensus 121 lat~~t~~------~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~------~~l~~~~~~l~~~~~d~IvL-gCT~~~t 187 (228)
T 2eq5_A 121 LNLTEETP------KVIRSILGNNLIAEDHPSGVSNTLDLLTDWGR------REVINAAKRLKEKGVEVIAL-GCTGMST 187 (228)
T ss_dssp ECSSSCCC------HHHHHHHGGGEEEEECCTTCCSGGGGGSHHHH------HHHHHHHHHHHHTTCSEEEE-CCTHHHH
T ss_pred EecCcccH------HHHHHHHHHHhCccccCCceeeHHHhcChHHH------HHHHHHHHHHHHcCCCEEEE-CCCCcch
Q ss_pred HHHHHHHHH
Q 003821 154 IHLFREAKE 162 (793)
Q Consensus 154 ~~~l~~a~~ 162 (793)
..+..+..+
T Consensus 188 ~~~~~~i~~ 196 (228)
T 2eq5_A 188 IGIAPVLEE 196 (228)
T ss_dssp HTCHHHHHH
T ss_pred HHHHHHHHH
No 285
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=28.56 E-value=1.4e+02 Score=25.46 Aligned_cols=57 Identities=18% Similarity=0.111 Sum_probs=32.0
Q ss_pred cHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcCCceEEEEeccCh--HHHHHHHHHHHHcC
Q 003821 94 NLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRTESRVFIILQSSL--AMGIHLFREAKEMG 164 (793)
Q Consensus 94 ~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivvl~~~~--~~~~~~l~~a~~~g 164 (793)
....+...|+..|..+... . +....+..+.+..++++|+ +... .+...++++.++..
T Consensus 26 ~~~~l~~~L~~~g~~v~~~---~----------~~~~a~~~l~~~~~dlvi~-D~~l~~~~g~~~~~~l~~~~ 84 (153)
T 3hv2_A 26 ILQRLQQLLSPLPYTLHFA---R----------DATQALQLLASREVDLVIS-AAHLPQMDGPTLLARIHQQY 84 (153)
T ss_dssp HHHHHHHHHTTSSCEEEEE---S----------SHHHHHHHHHHSCCSEEEE-ESCCSSSCHHHHHHHHHHHC
T ss_pred HHHHHHHHhcccCcEEEEE---C----------CHHHHHHHHHcCCCCEEEE-eCCCCcCcHHHHHHHHHhHC
Confidence 4667777777777654321 1 1233444555567787776 5442 34566666666643
No 286
>3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A*
Probab=28.34 E-value=2.7e+02 Score=28.09 Aligned_cols=88 Identities=17% Similarity=0.154 Sum_probs=61.4
Q ss_pred cCChHHHHHHHHHHHhhcCceEEEEEEEcCCCccccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhh
Q 003821 57 ANSSAEQITCTAALVGSYNWRKVIIIYEDDATNADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLL 136 (793)
Q Consensus 57 ~p~~~~~~~ai~~ll~~~~w~~vaii~~dd~~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~ 136 (793)
.|+....++.+.++++..+-++|.|-.+.+. ..+.|+++|+..+++++ .+++.. .++....
T Consensus 261 lPSle~I~rqIk~~vk~~~lksVFIATDa~~------~~~ELk~~L~~~~v~vv---~~~pe~----------a~ID~~I 321 (362)
T 3zy2_A 261 SPSKQQILEQIVEKVGSIGAKSVFVASDKDH------MIDEINEALKPYEIEAH---RQEPDD----------MYTSLAI 321 (362)
T ss_dssp SCCHHHHHHHHHHHHHHHTCSEEEEEESSCC------CHHHHHHHHGGGTCCEE---CCSSCC----------HHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhcCCcEEEEecCCHH------HHHHHHHHhhccCceEE---EeCCch----------hHHHHHH
Confidence 5888888889999999999999888776543 37899999987777653 333322 2344444
Q ss_pred cCCceEEEEeccChHHHHHHHHHHHHcC
Q 003821 137 RTESRVFIILQSSLAMGIHLFREAKEMG 164 (793)
Q Consensus 137 ~~~~~vivvl~~~~~~~~~~l~~a~~~g 164 (793)
-..++++|- .|...-...+.++=.-.|
T Consensus 322 ~~~A~~FIG-N~~SSFSa~I~rERdi~G 348 (362)
T 3zy2_A 322 MGRADLFVG-NCVSTFSHIVKRERDHAG 348 (362)
T ss_dssp HHHSSEEEE-CTTCHHHHHHHHHHHHSS
T ss_pred HHhCCEeec-CccccccHHHHHHHHhcC
Confidence 457888887 666666666666544556
No 287
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=28.20 E-value=1.5e+02 Score=28.83 Aligned_cols=81 Identities=10% Similarity=0.125 Sum_probs=46.8
Q ss_pred HhhcCceEEEEEEEcCC--CccccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcCCceEEEEecc
Q 003821 71 VGSYNWRKVIIIYEDDA--TNADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRTESRVFIILQS 148 (793)
Q Consensus 71 l~~~~w~~vaii~~dd~--~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivvl~~ 148 (793)
++.-+-+.|+++. +.. |. ......+++.+++.|..+..... .... . -...+..+.+.+.|.+|+...
T Consensus 7 L~~~~~~~Igvi~-~~~~~~~--~~~~~gi~~~a~~~g~~~~~~~~-~~~~------~-~~~~~~~l~~~~vdgiIi~~~ 75 (289)
T 3k9c_A 7 LRQASSRLLGVVF-ELQQPFH--GDLVEQIYAAATRRGYDVMLSAV-APSR------A-EKVAVQALMRERCEAAILLGT 75 (289)
T ss_dssp ------CEEEEEE-ETTCHHH--HHHHHHHHHHHHHTTCEEEEEEE-BTTB------C-HHHHHHHHTTTTEEEEEEETC
T ss_pred hhcCCCCEEEEEE-ecCCchH--HHHHHHHHHHHHHCCCEEEEEeC-CCCH------H-HHHHHHHHHhCCCCEEEEECC
Confidence 3333446788888 432 44 67788889999999987654422 1111 2 345677777778999888333
Q ss_pred ChHHHHHHHHHHHHcCC
Q 003821 149 SLAMGIHLFREAKEMGL 165 (793)
Q Consensus 149 ~~~~~~~~l~~a~~~g~ 165 (793)
..+. ..++.+.+ |+
T Consensus 76 ~~~~--~~~~~~~~-~i 89 (289)
T 3k9c_A 76 RFDT--DELGALAD-RV 89 (289)
T ss_dssp CCCH--HHHHHHHT-TS
T ss_pred CCCH--HHHHHHHc-CC
Confidence 3332 45555554 54
No 288
>2zzv_A ABC transporter, solute-binding protein; periplasmic substrate binding protein, calcium, lactate, trap transporter, transport protein; 1.40A {Thermus thermophilus} PDB: 2zzw_A 2zzx_A
Probab=28.07 E-value=56 Score=33.60 Aligned_cols=60 Identities=13% Similarity=0.072 Sum_probs=41.7
Q ss_pred CCCCCChHHhhhCCCcccccCchHHHHHHHhhcCCCCccccccCCHHHHHHHhhcCceEEEEechhhH
Q 003821 543 KPNVTDIGWLKASNLNVGFDGDSFVRNYLENVLGFKPENILKVDHEYKYITDFESNRIAAAFLELSYE 610 (793)
Q Consensus 543 ~~~i~sl~dL~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~ 610 (793)
..+|+|++||+ |+++.+.. ......++. .+. .... ....|...+|++|.+|+.....+..
T Consensus 163 ~~pI~s~~DLk--G~kirv~~-~~~~~~~~~-lGa---~pv~-~~~~e~~~ALq~G~VDg~~~~~~~~ 222 (361)
T 2zzv_A 163 KKPIRRFEDFK--GVKLRVPG-GMIAEVFAA-AGA---STVL-LPGGEVYPALERGVIDAADFVGPAV 222 (361)
T ss_dssp SSCCCSGGGGT--TCEEECCS-HHHHHHHHH-TTC---EEEC-CCGGGHHHHHHTTSCSEEECSCHHH
T ss_pred CCCcCChHHhC--CCEEeecC-HHHHHHHHH-cCC---eeee-cChHHHHHHHHcCCcceeecCCcch
Confidence 35899999999 88888773 444445544 232 2222 2567889999999999998765554
No 289
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=27.96 E-value=43 Score=33.22 Aligned_cols=85 Identities=12% Similarity=0.049 Sum_probs=51.0
Q ss_pred HHhhcCceEEEEEEEc-------CCCccccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcCCceE
Q 003821 70 LVGSYNWRKVIIIYED-------DATNADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRTESRV 142 (793)
Q Consensus 70 ll~~~~w~~vaii~~d-------d~~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~v 142 (793)
-++.-.-+.|+++..+ +.|. ..+...+++.+++.|..+... .... ........+..+.+.+.|.
T Consensus 16 ~L~~~~~~~Igvi~~~~~~~~~~~~~~--~~~~~gi~~~a~~~g~~~~~~---~~~~----~~~~~~~~~~~l~~~~vdg 86 (305)
T 3huu_A 16 TLITNKTLTIGLIQKSSAPEIRQNPFN--SDVLNGINQACNVRGYSTRMT---VSEN----SGDLYHEVKTMIQSKSVDG 86 (305)
T ss_dssp -----CCCEEEEECSCCSHHHHTSHHH--HHHHHHHHHHHHHHTCEEEEC---CCSS----HHHHHHHHHHHHHTTCCSE
T ss_pred HhhhCCCCEEEEEeCCCccccccCcHH--HHHHHHHHHHHHHCCCEEEEE---eCCC----ChHHHHHHHHHHHhCCCCE
Confidence 3334445689998876 3354 777888999999999876532 2111 1123345666777788999
Q ss_pred EEEeccChHHHHHHHHHHHHcCC
Q 003821 143 FIILQSSLAMGIHLFREAKEMGL 165 (793)
Q Consensus 143 ivvl~~~~~~~~~~l~~a~~~g~ 165 (793)
+|+ ...... ...++.+.+.|+
T Consensus 87 iIi-~~~~~~-~~~~~~l~~~~i 107 (305)
T 3huu_A 87 FIL-LYSLKD-DPIEHLLNEFKV 107 (305)
T ss_dssp EEE-SSCBTT-CHHHHHHHHTTC
T ss_pred EEE-eCCcCC-cHHHHHHHHcCC
Confidence 888 433222 245667777765
No 290
>1xs5_A 29 kDa protein, membrane lipoprotein TPN32; periplasmic binding protein, methionine, membrane protein; 1.85A {Treponema pallidum} SCOP: c.94.1.1
Probab=27.85 E-value=1.8e+02 Score=27.73 Aligned_cols=117 Identities=14% Similarity=0.156 Sum_probs=57.1
Q ss_pred CCCCCChHHh-hhCCCcccccCchHHHH----HHHhhcCC--------------------CCccccccCCHHHHHHHhhc
Q 003821 543 KPNVTDIGWL-KASNLNVGFDGDSFVRN----YLENVLGF--------------------KPENILKVDHEYKYITDFES 597 (793)
Q Consensus 543 ~~~i~sl~dL-~~~~~~~g~~~~~~~~~----~l~~~~~~--------------------~~~~~~~~~~~~~~~~~l~~ 597 (793)
...|+|++|| . |.+|++..++..+. +|.+. +. .+.++.. -+..+..+++
T Consensus 89 s~kiksl~dL~~--G~~Iaip~d~sn~~ral~lL~~a-Gli~l~~~~~~~~t~~dI~~np~~v~~~~-l~~~~~~~al-- 162 (241)
T 1xs5_A 89 SRTYRHVSDFPA--GAVIAIPNDSSNEARALRLLEAA-GFIRMRAGSGLFATVEDVQQNVRNVVLQE-VESALLPRVF-- 162 (241)
T ss_dssp CSSCCSGGGCCT--TCEEEEECSHHHHHHHHHHHHHT-TSCEECTTCCTTCCGGGEEECTTCCEEEE-ECGGGHHHHG--
T ss_pred cCCCCChHHcCC--CCEEEEeCCCchHHHHHHHHHHC-CCEEecCCCCCccChhhhhcCCCceEEEE-eCHHHHHHhh--
Confidence 3579999999 6 88999866554332 33322 21 1112222 2335566666
Q ss_pred CceEEEEechhhHHHHHhccC--CceEEeCccccccceEEEecCCCcChHHHHHHHHhhhccCchHHHHHHH
Q 003821 598 NRIAAAFLELSYERAFLSQHC--KEYTATIPTYRFGGFAFVFQKGSPLAADFSEAILKLSENGELRSLEEKW 667 (793)
Q Consensus 598 g~~~a~~~~~~~~~~~~~~~c--~~~~~~~~~~~~~~~~~~~~k~spl~~~in~~i~~l~e~G~~~~~~~~w 667 (793)
+++|+.+...+++.- ..... +.+. ...........++++++.-=.+.+.+.+..++..-..+.+.++|
T Consensus 163 ~~VDaa~i~~~~a~~-agl~~~~~~l~-~e~~~~~~~nviv~r~~~~~~~~vk~l~~a~~s~~v~~~i~~~~ 232 (241)
T 1xs5_A 163 DQVDGAVINGNYAIM-AGLSARRDGLA-VEPDASAYANVLVVKRGNEADARVQAVLRALCGGRVRTYLKERY 232 (241)
T ss_dssp GGSSEEEECHHHHHH-TTCCTTTTCSE-ECSCGGGGCEEEEEETTCTTCHHHHHHHHHHTSHHHHHHHHHHC
T ss_pred hccCEEEECcHHHHH-cCCCcccceEE-EcCCCCceEEEEEEECCccChHHHHHHHHHHCCHHHHHHHHHhc
Confidence 578888876655421 11111 1122 22221222335677766433344444444444333334444443
No 291
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=27.60 E-value=1.4e+02 Score=30.06 Aligned_cols=95 Identities=13% Similarity=-0.001 Sum_probs=47.4
Q ss_pred eEEEecCChHHHHHHHHHHHhhcCceEEEEEEEcCCCccccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHH
Q 003821 52 FLVRMANSSAEQITCTAALVGSYNWRKVIIIYEDDATNADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEK 131 (793)
Q Consensus 52 ~~~r~~p~~~~~~~ai~~ll~~~~w~~vaii~~dd~~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~ 131 (793)
.++.+.++.+.....|.. .+++.+|+.-..-+ ....+.+.+.+++.|+++.....-.+ .+....
T Consensus 11 ~~~~~~~~~~~~~~~m~~------~~~~~vi~Np~sg~--~~~~~~i~~~l~~~g~~~~~~~t~~~--------~~~~~~ 74 (332)
T 2bon_A 11 SLYKKAGSETLYIQGMAE------FPASLLILNGKSTD--NLPLREAIMLLREEGMTIHVRVTWEK--------GDAARY 74 (332)
T ss_dssp -------------------------CCEEEEECSSSTT--CHHHHHHHHHHHTTTCCEEEEECCST--------THHHHH
T ss_pred eeeeeccCcchhhhhhhh------cceEEEEECCCCCC--CchHHHHHHHHHHcCCcEEEEEecCc--------chHHHH
Confidence 345555555555555433 36788888655422 24466788888889987654322111 223333
Q ss_pred HHHhhcCCceEEEEeccChHHHHHHHHHHHHc
Q 003821 132 LLKLLRTESRVFIILQSSLAMGIHLFREAKEM 163 (793)
Q Consensus 132 l~~l~~~~~~vivvl~~~~~~~~~~l~~a~~~ 163 (793)
..+....+.|.||+ .+.......+++.+.+.
T Consensus 75 ~~~~~~~~~d~vvv-~GGDGTl~~v~~~l~~~ 105 (332)
T 2bon_A 75 VEEARKFGVATVIA-GGGDGTINEVSTALIQC 105 (332)
T ss_dssp HHHHHHHTCSEEEE-EESHHHHHHHHHHHHHC
T ss_pred HHHHHhcCCCEEEE-EccchHHHHHHHHHhhc
Confidence 44444456788888 67777778888887754
No 292
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=27.42 E-value=1.5e+02 Score=23.94 Aligned_cols=58 Identities=14% Similarity=0.143 Sum_probs=37.5
Q ss_pred cccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcCCceEEEEeccCh--HHHHHHHHHHHHc
Q 003821 92 TGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRTESRVFIILQSSL--AMGIHLFREAKEM 163 (793)
Q Consensus 92 ~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivvl~~~~--~~~~~~l~~a~~~ 163 (793)
......++..++..|.++.. .. +....+..+.+..++++++ +... .+...++++.++.
T Consensus 12 ~~~~~~l~~~L~~~g~~v~~---~~----------~~~~al~~~~~~~~dlii~-D~~~p~~~g~~~~~~lr~~ 71 (120)
T 3f6p_A 12 KPIADILEFNLRKEGYEVHC---AH----------DGNEAVEMVEELQPDLILL-DIMLPNKDGVEVCREVRKK 71 (120)
T ss_dssp HHHHHHHHHHHHHTTCEEEE---ES----------SHHHHHHHHHTTCCSEEEE-ETTSTTTHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCEEEEE---eC----------CHHHHHHHHhhCCCCEEEE-eCCCCCCCHHHHHHHHHhc
Confidence 33567788888888876542 11 1234455666678999888 6543 3567788887763
No 293
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=27.32 E-value=2e+02 Score=23.71 Aligned_cols=59 Identities=10% Similarity=-0.049 Sum_probs=36.4
Q ss_pred cccHHHHHHHHHh-cCceeeEEeecCCCCCCCCChHHHHHHHHHhhcCCceEEEEeccCh--HHHHHHHHHHHHc
Q 003821 92 TGNLALLSEALQI-SNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRTESRVFIILQSSL--AMGIHLFREAKEM 163 (793)
Q Consensus 92 ~~~~~~l~~~l~~-~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivvl~~~~--~~~~~~l~~a~~~ 163 (793)
......+...++. .|.+++.. .. +....+..+.+..++++++ +... .+...++++.++.
T Consensus 18 ~~~~~~l~~~L~~~~~~~~v~~--~~----------~~~~a~~~l~~~~~dlii~-d~~l~~~~g~~~~~~l~~~ 79 (143)
T 3cnb_A 18 KEFADMLTQFLENLFPYAKIKI--AY----------NPFDAGDLLHTVKPDVVML-DLMMVGMDGFSICHRIKST 79 (143)
T ss_dssp HHHHHHHHHHHHHHCTTCEEEE--EC----------SHHHHHHHHHHTCCSEEEE-ETTCTTSCHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHhccCccEEEE--EC----------CHHHHHHHHHhcCCCEEEE-ecccCCCcHHHHHHHHHhC
Confidence 3356778888887 78762222 11 1233455566667898887 6543 3566778888774
No 294
>3lmz_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS isomerase; HET: MSE CIT PGE; 1.44A {Parabacteroides distasonis}
Probab=27.29 E-value=1.7e+02 Score=27.97 Aligned_cols=96 Identities=6% Similarity=-0.046 Sum_probs=65.7
Q ss_pred HHHHHHHHhhcCceEEEEEEEcCCCccccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcCCceEE
Q 003821 64 ITCTAALVGSYNWRKVIIIYEDDATNADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRTESRVF 143 (793)
Q Consensus 64 ~~ai~~ll~~~~w~~vaii~~dd~~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vi 143 (793)
....++.++..|.+.|-+....-.++......+.+++.+++.|+++........ .....+.+.+...+..+++.+
T Consensus 32 ~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~~~~~-----~~~~~~~~~i~~A~~lGa~~v 106 (257)
T 3lmz_A 32 LDTTLKTLERLDIHYLCIKDFHLPLNSTDEQIRAFHDKCAAHKVTGYAVGPIYM-----KSEEEIDRAFDYAKRVGVKLI 106 (257)
T ss_dssp HHHHHHHHHHTTCCEEEECTTTSCTTCCHHHHHHHHHHHHHTTCEEEEEEEEEE-----CSHHHHHHHHHHHHHHTCSEE
T ss_pred HHHHHHHHHHhCCCEEEEecccCCCCCCHHHHHHHHHHHHHcCCeEEEEecccc-----CCHHHHHHHHHHHHHhCCCEE
Confidence 356677788889998887643211110034568899999999998875433221 123556777777777788888
Q ss_pred EEeccChHHHHHHHHHHHHcCC
Q 003821 144 IILQSSLAMGIHLFREAKEMGL 165 (793)
Q Consensus 144 vvl~~~~~~~~~~l~~a~~~g~ 165 (793)
++ ....+....+.+.|.+.|+
T Consensus 107 ~~-~p~~~~l~~l~~~a~~~gv 127 (257)
T 3lmz_A 107 VG-VPNYELLPYVDKKVKEYDF 127 (257)
T ss_dssp EE-EECGGGHHHHHHHHHHHTC
T ss_pred Ee-cCCHHHHHHHHHHHHHcCC
Confidence 87 6667778888888988887
No 295
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=26.72 E-value=3.7e+02 Score=25.19 Aligned_cols=109 Identities=10% Similarity=0.087 Sum_probs=68.1
Q ss_pred cEEeeeCCCCCCCCCCCCCCeEEEecCChHHHHHHHHHHHhhcCceEEEEEEEcCCCccccccHHHHHHHHHhcCceeeE
Q 003821 32 PVLSFAEPAIAPPLTSTRWPFLVRMANSSAEQITCTAALVGSYNWRKVIIIYEDDATNADTGNLALLSEALQISNSEIEY 111 (793)
Q Consensus 32 P~Is~~~~~~~~~l~~~~~~~~~r~~p~~~~~~~ai~~ll~~~~w~~vaii~~dd~~G~~~~~~~~l~~~l~~~g~~v~~ 111 (793)
.+||-+++ ...+.+.-.--+.-+..+..+..+++...-++. +++++|.-.+. ...++.+.+.+ |.++..
T Consensus 66 VIISRGgt--a~~Lr~~~~iPVV~I~vs~~Dil~aL~~a~~~~--~kIavVg~~~~----~~~~~~i~~ll---~~~i~~ 134 (225)
T 2pju_A 66 AIIAAGSN--GAYLKSRLSVPVILIKPSGYDVLQFLAKAGKLT--SSIGVVTYQET----IPALVAFQKTF---NLRLDQ 134 (225)
T ss_dssp EEEEEHHH--HHHHHTTCSSCEEEECCCHHHHHHHHHHTTCTT--SCEEEEEESSC----CHHHHHHHHHH---TCCEEE
T ss_pred EEEeCChH--HHHHHhhCCCCEEEecCCHHHHHHHHHHHHhhC--CcEEEEeCchh----hhHHHHHHHHh---CCceEE
Confidence 56666666 333433222235678888888888887775543 48888876654 22255555555 555443
Q ss_pred EeecCCCCCCCCChHHHHHHHHHhhcCCceEEEEeccChHHHHHHHHHHHHcCCC
Q 003821 112 RLVLPPISYLTDPKQFLQEKLLKLLRTESRVFIILQSSLAMGIHLFREAKEMGLV 166 (793)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivvl~~~~~~~~~~l~~a~~~g~~ 166 (793)
. .+.. .++....++++++.+.++||- .+ ...+.|+++||.
T Consensus 135 ~-~~~~-------~ee~~~~i~~l~~~G~~vVVG-~~------~~~~~A~~~Gl~ 174 (225)
T 2pju_A 135 R-SYIT-------EEDARGQINELKANGTEAVVG-AG------LITDLAEEAGMT 174 (225)
T ss_dssp E-EESS-------HHHHHHHHHHHHHTTCCEEEE-SH------HHHHHHHHTTSE
T ss_pred E-EeCC-------HHHHHHHHHHHHHCCCCEEEC-CH------HHHHHHHHcCCc
Confidence 2 3332 367899999999999998654 22 236677889984
No 296
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=26.48 E-value=56 Score=32.14 Aligned_cols=81 Identities=9% Similarity=-0.085 Sum_probs=51.3
Q ss_pred eEEEEEEEcC--CCccccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcCCceEEEEeccChHHHH
Q 003821 77 RKVIIIYEDD--ATNADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRTESRVFIILQSSLAMGI 154 (793)
Q Consensus 77 ~~vaii~~dd--~~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivvl~~~~~~~~ 154 (793)
++|+++..+. .|. ..+...+++++++.|.++..... ... .........+..+.+.+.|.||+.....+...
T Consensus 6 ~~Igvi~~~~~~~~~--~~~~~g~~~~a~~~g~~~~~~~~-~~~----~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~~ 78 (304)
T 3o1i_D 6 EKICAIYPHLKDSYW--LSVNYGMVSEAEKQGVNLRVLEA-GGY----PNKSRQEQQLALCTQWGANAIILGTVDPHAYE 78 (304)
T ss_dssp CEEEEEESCSCSHHH--HHHHHHHHHHHHHHTCEEEEEEC-SST----TCHHHHHHHHHHHHHHTCSEEEECCSSTTSST
T ss_pred cEEEEEeCCCCCcHH--HHHHHHHHHHHHHcCCeEEEEcC-CCC----CCHHHHHHHHHHHHHcCCCEEEEeCCChhHHH
Confidence 5788888763 355 77888999999999988654321 110 01234556677777788999988333333234
Q ss_pred HHHHHHHHcCC
Q 003821 155 HLFREAKEMGL 165 (793)
Q Consensus 155 ~~l~~a~~~g~ 165 (793)
..++++. .|+
T Consensus 79 ~~~~~~~-~~i 88 (304)
T 3o1i_D 79 HNLKSWV-GNT 88 (304)
T ss_dssp TTHHHHT-TTS
T ss_pred HHHHHHc-CCC
Confidence 5566666 565
No 297
>2hpg_A ABC transporter, periplasmic substrate-binding protein; periplasmic binding protein, thermophilic proteins, trap- transport; HET: MSE; 1.90A {Thermotoga maritima}
Probab=26.48 E-value=78 Score=31.96 Aligned_cols=61 Identities=11% Similarity=0.047 Sum_probs=42.4
Q ss_pred CCCCCChHHhhhCCCcccccCchHHHHHHHhhcCCCCccccccCCHHHHHHHhhcCceEEEEechhhH
Q 003821 543 KPNVTDIGWLKASNLNVGFDGDSFVRNYLENVLGFKPENILKVDHEYKYITDFESNRIAAAFLELSYE 610 (793)
Q Consensus 543 ~~~i~sl~dL~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~ 610 (793)
..+|+|++||+ |+++.+..+......++.. +.. .......|...+|++|.+|+........
T Consensus 147 ~~pI~s~~DLk--G~KiRv~~~~~~~~~~~al-Ga~----pv~m~~~Evy~ALq~G~VDg~~~p~~~~ 207 (327)
T 2hpg_A 147 NKPIRKPEDLN--GLRIRTPGAPAWQESIRSL-GAI----PVAVNFGEIYTAVQTRAVDGAELTYANV 207 (327)
T ss_dssp SSCCSSGGGGT--TCEEECCSSHHHHHHHHHH-TSE----EECCCGGGHHHHHHTTSCSEEEECHHHH
T ss_pred CCCCCCHHHHC--CCEEEeCCCHHHHHHHHHc-CCE----eeecCHHHHHHHHHcCCeeEEECCHHHH
Confidence 35899999999 8888876554444555543 321 1234567899999999999998865443
No 298
>1q9u_A Uncharacterized protein APC35924; structural genomics, Zn-binding proteins, PSI, protein structure initiative; HET: CSW CME; 1.80A {Geobacillus stearothermophilus} SCOP: d.129.7.1
Probab=26.39 E-value=94 Score=26.32 Aligned_cols=70 Identities=16% Similarity=0.143 Sum_probs=48.9
Q ss_pred cccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhc-C-CceEEEEeccChHHHHHHHHHHHHcCCCCCC
Q 003821 92 TGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLR-T-ESRVFIILQSSLAMGIHLFREAKEMGLVGPD 169 (793)
Q Consensus 92 ~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~-~-~~~vivvl~~~~~~~~~~l~~a~~~g~~~~~ 169 (793)
.+..+++++++++.|+.|...+. ....+++-.. . .+-.++. +|++..+..+++.-...|+.-|-
T Consensus 16 ~e~~~~l~~al~~~Gf~v~~~~d-------------~~~~~~~~G~~~~~~~~il~-~cnp~~a~~~l~~~p~~g~~lPc 81 (130)
T 1q9u_A 16 NETIERLEESLKQEGFGVLWQFS-------------VTEKLQEKGLDFSTPMVILE-VCNPQEAARVLNENLLVGYFLPC 81 (130)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEE-------------HHHHHHHTTCCCCSCEEEEE-EECHHHHHHHHHHCGGGGGGCSE
T ss_pred HHHHHHHHHHHHHCCCEEEEEEC-------------HHHHHHhcCCCCCCCCEEEE-EeCHHHHHHHHHhCHHHHhhcCe
Confidence 77899999999999999876532 3334444321 2 2334444 79999999999998899988775
Q ss_pred eEEEEe
Q 003821 170 SVWVIA 175 (793)
Q Consensus 170 ~~wi~~ 175 (793)
.+-+.-
T Consensus 82 rv~v~e 87 (130)
T 1q9u_A 82 KLVVYQ 87 (130)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 544443
No 299
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=26.34 E-value=1.2e+02 Score=25.22 Aligned_cols=58 Identities=16% Similarity=0.156 Sum_probs=37.1
Q ss_pred cccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhc-CCceEEEEeccChH--HHHHHHHHHHHc
Q 003821 92 TGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLR-TESRVFIILQSSLA--MGIHLFREAKEM 163 (793)
Q Consensus 92 ~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~-~~~~vivvl~~~~~--~~~~~l~~a~~~ 163 (793)
......+...++..|..+.. .. +....+..+.+ ..++++++ +...+ +...++++.++.
T Consensus 25 ~~~~~~l~~~L~~~g~~v~~---~~----------~~~~al~~l~~~~~~dlvil-D~~l~~~~g~~~~~~l~~~ 85 (138)
T 2b4a_A 25 PSHATLIQYHLNQLGAEVTV---HP----------SGSAFFQHRSQLSTCDLLIV-SDQLVDLSIFSLLDIVKEQ 85 (138)
T ss_dssp HHHHHHHHHHHHHTTCEEEE---ES----------SHHHHHHTGGGGGSCSEEEE-ETTCTTSCHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHcCCEEEE---eC----------CHHHHHHHHHhCCCCCEEEE-eCCCCCCCHHHHHHHHHhh
Confidence 34577888888888876432 11 12345566666 68999887 65433 466777777764
No 300
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=26.08 E-value=95 Score=25.15 Aligned_cols=58 Identities=16% Similarity=0.147 Sum_probs=37.2
Q ss_pred cccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcCCceEEEEeccChH---HHHHHHHHHHHc
Q 003821 92 TGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRTESRVFIILQSSLA---MGIHLFREAKEM 163 (793)
Q Consensus 92 ~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivvl~~~~~---~~~~~l~~a~~~ 163 (793)
......+...++..|.++... .. ....+..+.+..++++++ +...+ +...++++.++.
T Consensus 15 ~~~~~~l~~~L~~~g~~v~~~---~~----------~~~a~~~~~~~~~dlvi~-d~~~~~~~~g~~~~~~l~~~ 75 (127)
T 2gkg_A 15 TALSATLRSALEGRGFTVDET---TD----------GKGSVEQIRRDRPDLVVL-AVDLSAGQNGYLICGKLKKD 75 (127)
T ss_dssp HHHHHHHHHHHHHHTCEEEEE---CC----------HHHHHHHHHHHCCSEEEE-ESBCGGGCBHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhcCceEEEe---cC----------HHHHHHHHHhcCCCEEEE-eCCCCCCCCHHHHHHHHhcC
Confidence 335778888888888765421 11 223444555567898887 65533 567888888876
No 301
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=25.63 E-value=94 Score=30.63 Aligned_cols=79 Identities=6% Similarity=-0.010 Sum_probs=49.6
Q ss_pred eEEEEEEEcC--CCccccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcCCceEEEEeccCh-HHH
Q 003821 77 RKVIIIYEDD--ATNADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRTESRVFIILQSSL-AMG 153 (793)
Q Consensus 77 ~~vaii~~dd--~~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivvl~~~~-~~~ 153 (793)
.+|+++..+. .|. ......+++.+++.|..+.... ... ......+.+..+.+.+.|.||+ .... +..
T Consensus 3 ~~Ig~i~~~~~~~~~--~~~~~gi~~~a~~~g~~l~~~~--~~~-----~~~~~~~~i~~l~~~~vdgiIi-~~~~~~~~ 72 (306)
T 2vk2_A 3 LTVGFSQVGSESGWR--AAETNVAKSEAEKRGITLKIAD--GQQ-----KQENQIKAVRSFVAQGVDAIFI-APVVATGW 72 (306)
T ss_dssp CEEEEEECCCCSHHH--HHHHHHHHHHHHHHTCEEEEEE--CTT-----CHHHHHHHHHHHHHHTCSEEEE-CCSSSSSC
T ss_pred eEEEEEeCCCCCHHH--HHHHHHHHHHHHHcCCEEEEeC--CCC-----CHHHHHHHHHHHHHcCCCEEEE-eCCChhhH
Confidence 4688887653 355 6677888999999998765431 111 1133445667777778999888 4432 222
Q ss_pred HHHHHHHHHcCC
Q 003821 154 IHLFREAKEMGL 165 (793)
Q Consensus 154 ~~~l~~a~~~g~ 165 (793)
...++.+.+.|+
T Consensus 73 ~~~~~~~~~~~i 84 (306)
T 2vk2_A 73 EPVLKEAKDAEI 84 (306)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHCCC
Confidence 455677777665
No 302
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=25.62 E-value=1.2e+02 Score=29.04 Aligned_cols=76 Identities=7% Similarity=-0.063 Sum_probs=47.5
Q ss_pred eEEEEEEEcC--CCccccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcCCceEEEEeccChHHHH
Q 003821 77 RKVIIIYEDD--ATNADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRTESRVFIILQSSLAMGI 154 (793)
Q Consensus 77 ~~vaii~~dd--~~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivvl~~~~~~~~ 154 (793)
+.|+++..+. .|. ..+...+++.+++.|..+... .... ........+..+.+.+.|.||+ .... .
T Consensus 9 ~~Ig~i~~~~~~~~~--~~~~~gi~~~~~~~g~~~~~~-~~~~------~~~~~~~~~~~l~~~~~dgiIi-~~~~---~ 75 (277)
T 3e61_A 9 KLIGLLLPDMSNPFF--TLIARGVEDVALAHGYQVLIG-NSDN------DIKKAQGYLATFVSHNCTGMIS-TAFN---E 75 (277)
T ss_dssp -CEEEEESCTTSHHH--HHHHHHHHHHHHHTTCCEEEE-ECTT------CHHHHHHHHHHHHHTTCSEEEE-CGGG---H
T ss_pred CEEEEEECCCCCHHH--HHHHHHHHHHHHHCCCEEEEE-eCCC------CHHHHHHHHHHHHhCCCCEEEE-ecCC---h
Confidence 5688887753 354 777888889999999876532 1111 1233455667777788999888 4422 2
Q ss_pred HHHH-HHHHcCC
Q 003821 155 HLFR-EAKEMGL 165 (793)
Q Consensus 155 ~~l~-~a~~~g~ 165 (793)
..++ .+.+.|+
T Consensus 76 ~~~~~~l~~~~i 87 (277)
T 3e61_A 76 NIIENTLTDHHI 87 (277)
T ss_dssp HHHHHHHHHC-C
T ss_pred HHHHHHHHcCCC
Confidence 3456 6666665
No 303
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=25.35 E-value=1.8e+02 Score=24.21 Aligned_cols=57 Identities=11% Similarity=0.105 Sum_probs=35.7
Q ss_pred cHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcCCceEEEEeccCh--HHHHHHHHHHHHcC
Q 003821 94 NLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRTESRVFIILQSSL--AMGIHLFREAKEMG 164 (793)
Q Consensus 94 ~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivvl~~~~--~~~~~~l~~a~~~g 164 (793)
....++..++..|..+.. ... ....+..+....++++++ +... .+...++++.++..
T Consensus 16 ~~~~l~~~L~~~g~~v~~---~~~----------~~~a~~~l~~~~~dlvll-D~~l~~~~g~~l~~~l~~~~ 74 (137)
T 3cfy_A 16 LAILYKQYVKDEPYDIFH---VET----------GRDAIQFIERSKPQLIIL-DLKLPDMSGEDVLDWINQND 74 (137)
T ss_dssp HHHHHHHHTTTSSSEEEE---ESS----------HHHHHHHHHHHCCSEEEE-CSBCSSSBHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCceEEE---eCC----------HHHHHHHHHhcCCCEEEE-ecCCCCCCHHHHHHHHHhcC
Confidence 467788888877876432 111 223444555567898887 6543 35667788887754
No 304
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=25.16 E-value=2.2e+02 Score=22.22 Aligned_cols=59 Identities=12% Similarity=0.076 Sum_probs=37.4
Q ss_pred cccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcCCceEEEEeccCh--HHHHHHHHHHHHcC
Q 003821 92 TGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRTESRVFIILQSSL--AMGIHLFREAKEMG 164 (793)
Q Consensus 92 ~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivvl~~~~--~~~~~~l~~a~~~g 164 (793)
......+...++..|..+... .. ....+..+.+..++++++ +... .....++++.++..
T Consensus 11 ~~~~~~l~~~l~~~g~~v~~~---~~----------~~~~~~~l~~~~~dlii~-d~~~~~~~~~~~~~~l~~~~ 71 (119)
T 2j48_A 11 DEAATVVCEMLTAAGFKVIWL---VD----------GSTALDQLDLLQPIVILM-AWPPPDQSCLLLLQHLREHQ 71 (119)
T ss_dssp HHHHHHHHHHHHHTTCEEEEE---SC----------HHHHHHHHHHHCCSEEEE-ECSTTCCTHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhCCcEEEEe---cC----------HHHHHHHHHhcCCCEEEE-ecCCCCCCHHHHHHHHHhcc
Confidence 334678888888888765422 11 223344455557898887 6543 35677888888765
No 305
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=25.14 E-value=1.4e+02 Score=28.90 Aligned_cols=82 Identities=6% Similarity=-0.070 Sum_probs=48.7
Q ss_pred eEEEEEEEc--CCCccccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcCCceEEEEeccChHHHH
Q 003821 77 RKVIIIYED--DATNADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRTESRVFIILQSSLAMGI 154 (793)
Q Consensus 77 ~~vaii~~d--d~~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivvl~~~~~~~~ 154 (793)
+.|+++..+ +.|. ..+...+++.+++.|..+.........+ ...-...+..+...+.|.+|+.....+...
T Consensus 2 ~~Igvi~~~~~~~f~--~~~~~gi~~~a~~~g~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~vdgiIi~~~~~~~~~ 74 (288)
T 1gud_A 2 AEYAVVLKTLSNPFW--VDMKKGIEDEAKTLGVSVDIFASPSEGD-----FQSQLQLFEDLSNKNYKGIAFAPLSSVNLV 74 (288)
T ss_dssp CEEEEEESCSSSHHH--HHHHHHHHHHHHHHTCCEEEEECSSTTC-----HHHHHHHHHHHHTSSEEEEEECCSSSSTTH
T ss_pred cEEEEEeCCCCchHH--HHHHHHHHHHHHHcCCEEEEeCCCCCCC-----HHHHHHHHHHHHHcCCCEEEEeCCChHHHH
Confidence 467888765 3354 6778888999999998765431101111 123345566777778999888222223223
Q ss_pred HHHHHHHHcCC
Q 003821 155 HLFREAKEMGL 165 (793)
Q Consensus 155 ~~l~~a~~~g~ 165 (793)
..++++.+.|+
T Consensus 75 ~~~~~~~~~~i 85 (288)
T 1gud_A 75 MPVARAWKKGI 85 (288)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHCCC
Confidence 45677777665
No 306
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=25.10 E-value=1.2e+02 Score=29.58 Aligned_cols=78 Identities=10% Similarity=-0.039 Sum_probs=46.4
Q ss_pred eEEEEEEEc--CCCccccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcCCceEEEEeccChHHHH
Q 003821 77 RKVIIIYED--DATNADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRTESRVFIILQSSLAMGI 154 (793)
Q Consensus 77 ~~vaii~~d--d~~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivvl~~~~~~~~ 154 (793)
+.|+++..+ +.|. ......+++.+++.|..+... . ... ......+.+..+.+.+.|.+|+ ...... .
T Consensus 17 ~~Igvi~~~~~~~~~--~~~~~gi~~~a~~~g~~~~~~-~-~~~-----~~~~~~~~~~~l~~~~vdgiIi-~~~~~~-~ 85 (289)
T 2fep_A 17 TTVGVIIPDISSIFY--SELARGIEDIATMYKYNIILS-N-SDQ-----NMEKELHLLNTMLGKQVDGIVF-MGGNIT-D 85 (289)
T ss_dssp CEEEEEESCTTSHHH--HHHHHHHHHHHHHTTCEEEEE-E-CTT-----CHHHHHHHHHHHHHTTCSEEEE-CCSCCC-H
T ss_pred CeEEEEeCCCCCchH--HHHHHHHHHHHHHcCCEEEEE-e-CCC-----CHHHHHHHHHHHHhCCCCEEEE-ecCCCC-H
Confidence 478888765 3354 677888888888888876532 1 111 1133445666777778888887 432111 2
Q ss_pred HHHHHHHHcCC
Q 003821 155 HLFREAKEMGL 165 (793)
Q Consensus 155 ~~l~~a~~~g~ 165 (793)
..++.+.+.|+
T Consensus 86 ~~~~~l~~~~i 96 (289)
T 2fep_A 86 EHVAEFKRSPV 96 (289)
T ss_dssp HHHHHHHHSSS
T ss_pred HHHHHHHhcCC
Confidence 34555556554
No 307
>3fzv_A Probable transcriptional regulator; LYSR, structural genomics, PSI-2, structure initiative; 2.71A {Pseudomonas aeruginosa PA01}
Probab=24.93 E-value=4.3e+02 Score=25.30 Aligned_cols=105 Identities=10% Similarity=-0.012 Sum_probs=55.7
Q ss_pred CChHHhhhCCCcccccC-c---hHHHHHHHhhcCCCCccccccCCHHHHHHHhhcCceEEEEechhhHHHHHhccCCceE
Q 003821 547 TDIGWLKASNLNVGFDG-D---SFVRNYLENVLGFKPENILKVDHEYKYITDFESNRIAAAFLELSYERAFLSQHCKEYT 622 (793)
Q Consensus 547 ~sl~dL~~~~~~~g~~~-~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~c~~~~ 622 (793)
-+++||. +.++.... + .....++... +.........++.+.....+..|..-+++.+........ . ...+.
T Consensus 186 ~~~~dL~--~~~~i~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~v~~g~Gia~lp~~~~~~~~~-~-~~~l~ 260 (306)
T 3fzv_A 186 VSLRDLC--LEPMILLDVQPSRTYFVSLFEEL-GLTPNIAFSSPSIEMVRGMVGQGFGFSLLVTRPHSECTY-D-GKKVV 260 (306)
T ss_dssp ECHHHHT--TSCEEEECCTTHHHHHHHHHHHT-TCCCCEEEEESCHHHHHHHHHTTSCBEEECCCCSCSBCT-T-SCBEE
T ss_pred CCHHHHc--CCCEEEecCCcchHHHHHHHHHc-CCCCCeEEEeCCHHHHHHHHHcCCCEEEEeccccccccc-C-CCceE
Confidence 5788887 44443321 1 2233334332 333334455688888889999987555554432221111 1 11133
Q ss_pred Ee--CccccccceEEEecCCCcChHHHHHHHHhhhc
Q 003821 623 AT--IPTYRFGGFAFVFQKGSPLAADFSEAILKLSE 656 (793)
Q Consensus 623 ~~--~~~~~~~~~~~~~~k~spl~~~in~~i~~l~e 656 (793)
.+ ........++++.+++.+....+...+..+.+
T Consensus 261 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~l~~ 296 (306)
T 3fzv_A 261 MVDLAEPVSTSGLAAAWLKRAQLTKPARLFVDYCRE 296 (306)
T ss_dssp EEEESSCCCBCCCEEEEETTSCCCHHHHHHHHHHHH
T ss_pred EEECCCCCccceEEEEEeCCcccCHHHHHHHHHHHH
Confidence 33 22333457888999887666666665555544
No 308
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=24.75 E-value=2.3e+02 Score=23.91 Aligned_cols=61 Identities=10% Similarity=-0.002 Sum_probs=37.9
Q ss_pred cccHHHHHHHHHh-cCceeeEEeecCCCCCCCCChHHHHHHHHHhhcCCceEEEEeccCh--HHHHHHHHHHHHcCC
Q 003821 92 TGNLALLSEALQI-SNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRTESRVFIILQSSL--AMGIHLFREAKEMGL 165 (793)
Q Consensus 92 ~~~~~~l~~~l~~-~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivvl~~~~--~~~~~~l~~a~~~g~ 165 (793)
......+...++. .|..+... .. +....+..+.+..++++|+ +... .+...++++.++..-
T Consensus 15 ~~~~~~l~~~L~~~~~~~v~~~--~~----------~~~~a~~~l~~~~~dlii~-D~~l~~~~g~~~~~~l~~~~~ 78 (153)
T 3cz5_A 15 PIVREGYRRLIERRPGYAVVAE--AA----------DAGEAYRLYRETTPDIVVM-DLTLPGPGGIEATRHIRQWDG 78 (153)
T ss_dssp HHHHHHHHHHHTTSTTEEEEEE--ES----------SHHHHHHHHHTTCCSEEEE-CSCCSSSCHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHhhCCCcEEEEE--eC----------CHHHHHHHHhcCCCCEEEE-ecCCCCCCHHHHHHHHHHhCC
Confidence 3357788888887 67664422 11 1234455566667998887 6543 356778888887643
No 309
>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A*
Probab=24.66 E-value=1.4e+02 Score=29.77 Aligned_cols=59 Identities=15% Similarity=0.097 Sum_probs=40.4
Q ss_pred eEEEEEEE--c--C-CCccccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcCCceEEEE
Q 003821 77 RKVIIIYE--D--D-ATNADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRTESRVFII 145 (793)
Q Consensus 77 ~~vaii~~--d--d-~~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivv 145 (793)
.+|++|+. + | .|- ....+.+++.+++.|.++..... ... .+..+.+..+.+.+.+.||+
T Consensus 5 ~~Ig~v~~~g~~~d~~f~--~~~~~Gi~~~~~~~g~~~~~~~~--~~~------~~~~~~l~~l~~~~~dgIi~ 68 (318)
T 2fqx_A 5 FVVGMVTDSGDIDDKSFN--QQVWEGISRFAQENNAKCKYVTA--STD------AEYVPSLSAFADENMGLVVA 68 (318)
T ss_dssp CEEEEEESSSCTTSSSHH--HHHHHHHHHHHHHTTCEEEEEEC--CSG------GGHHHHHHHHHHTTCSEEEE
T ss_pred cEEEEEEcCCCCCCccHH--HHHHHHHHHHHHHhCCeEEEEeC--CCH------HHHHHHHHHHHHcCCCEEEE
Confidence 47899986 2 3 344 66678888889999987654432 111 23456678888788999888
No 310
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=24.65 E-value=2.7e+02 Score=22.59 Aligned_cols=68 Identities=13% Similarity=0.019 Sum_probs=40.8
Q ss_pred ccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcCCceEEEEeccCh--HHHHHHHHHHHHcCCCCCCe
Q 003821 93 GNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRTESRVFIILQSSL--AMGIHLFREAKEMGLVGPDS 170 (793)
Q Consensus 93 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivvl~~~~--~~~~~~l~~a~~~g~~~~~~ 170 (793)
.....++..++ .|..+... . +....+..+.+..++++++ +... .+...++++.++.+....--
T Consensus 15 ~~~~~l~~~l~-~~~~v~~~---~----------~~~~a~~~l~~~~~dlvi~-d~~l~~~~g~~~~~~l~~~~~~~~~p 79 (133)
T 3nhm_A 15 TMRETLRLLLS-GEFDCTTA---A----------DGASGLQQALAHPPDVLIS-DVNMDGMDGYALCGHFRSEPTLKHIP 79 (133)
T ss_dssp HHHHHHHHHHT-TTSEEEEE---S----------SHHHHHHHHHHSCCSEEEE-CSSCSSSCHHHHHHHHHHSTTTTTCC
T ss_pred HHHHHHHHHHh-CCcEEEEE---C----------CHHHHHHHHhcCCCCEEEE-eCCCCCCCHHHHHHHHHhCCccCCCC
Confidence 34677777787 66654321 1 1234555666678999888 6543 45778888888865422222
Q ss_pred EEEEe
Q 003821 171 VWVIA 175 (793)
Q Consensus 171 ~wi~~ 175 (793)
+.+++
T Consensus 80 ii~~s 84 (133)
T 3nhm_A 80 VIFVS 84 (133)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 44444
No 311
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=24.46 E-value=86 Score=30.73 Aligned_cols=77 Identities=8% Similarity=0.065 Sum_probs=44.0
Q ss_pred eEEEEEEE----c--CCCccccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcCCceEEEEeccCh
Q 003821 77 RKVIIIYE----D--DATNADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRTESRVFIILQSSL 150 (793)
Q Consensus 77 ~~vaii~~----d--d~~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivvl~~~~ 150 (793)
+.|+++.. + +.|. ..+...+++.+++.|..+..... .. . ......+..+.+.+.|.+|+.....
T Consensus 7 ~~Igvi~~~~~~~~~~~~~--~~~~~gi~~~a~~~g~~~~~~~~-~~-~------~~~~~~~~~l~~~~vdGiIi~~~~~ 76 (294)
T 3qk7_A 7 DAIALAYPSRPRVLNNSTF--LEMISWIGIELGKRGLDLLLIPD-EP-G------EKYQSLIHLVETRRVDALIVAHTQP 76 (294)
T ss_dssp CEEEEEEESCSGGGSCHHH--HHHHHHHHHHHHHTTCEEEEEEE-CT-T------CCCHHHHHHHHHTCCSEEEECSCCS
T ss_pred ceEEEEecCCCccccChhH--HHHHHHHHHHHHHCCCEEEEEeC-CC-h------hhHHHHHHHHHcCCCCEEEEeCCCC
Confidence 56788876 2 2344 66778888888888887654432 11 1 1122344555666788877722222
Q ss_pred HHHHHHHHHHHHcCC
Q 003821 151 AMGIHLFREAKEMGL 165 (793)
Q Consensus 151 ~~~~~~l~~a~~~g~ 165 (793)
+. ..++.+.+.|+
T Consensus 77 ~~--~~~~~l~~~~i 89 (294)
T 3qk7_A 77 ED--FRLQYLQKQNF 89 (294)
T ss_dssp SC--HHHHHHHHTTC
T ss_pred Ch--HHHHHHHhCCC
Confidence 22 45566666665
No 312
>2i49_A Bicarbonate transporter; alpha-beta protein, C-clamp, ABC transporter, periplasmic SO binding protein, bicarbonate-binding protein; 1.35A {Synechocystis SP} PDB: 2i48_A 2i4b_A 2i4c_A
Probab=23.99 E-value=1.9e+02 Score=30.39 Aligned_cols=67 Identities=10% Similarity=0.141 Sum_probs=42.8
Q ss_pred hHHh-hhCCC--ccccc-CchHHH----HHHHhhcCCCC---ccccccCCHHHHHHHhhcCceEEEEechhhHHHHHhcc
Q 003821 549 IGWL-KASNL--NVGFD-GDSFVR----NYLENVLGFKP---ENILKVDHEYKYITDFESNRIAAAFLELSYERAFLSQH 617 (793)
Q Consensus 549 l~dL-~~~~~--~~g~~-~~~~~~----~~l~~~~~~~~---~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~ 617 (793)
++|| ++.|. ++|+. .++... .+|.. .+... .++..+ ...+...+|++|++|+++...++......+.
T Consensus 153 i~dL~k~~GK~~~Iav~~~gs~~~~~l~~~L~~-~Gl~p~~DV~~v~~-~~~~~~~aL~~G~iDa~~~~eP~~~~a~~~g 230 (429)
T 2i49_A 153 IKGFNKTNGRKFKAAHTFPNVNQDFWIRYWFAA-GGVDPDTDIDLLAV-PPAETVQGMRNGTMDAFSTGDPWPYRIVTEN 230 (429)
T ss_dssp HHTHHHHHSSCCEEEESSTTSHHHHHHHHHHHH-TTCCTTTTSEEEEC-CHHHHHHHHHHTCCCEEEEETTHHHHHHHTT
T ss_pred HHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHh-cCCCCCCcEEEEEC-ChHHHHHHHHcCCccEEEeccchHHHHHHCC
Confidence 6888 74455 89985 444332 23333 34433 233333 5678899999999999998877776555543
No 313
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=23.86 E-value=2.7e+02 Score=22.02 Aligned_cols=58 Identities=16% Similarity=0.091 Sum_probs=34.9
Q ss_pred ccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcCCceEEEEeccCh--HHHHHHHHHHHHcC
Q 003821 93 GNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRTESRVFIILQSSL--AMGIHLFREAKEMG 164 (793)
Q Consensus 93 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivvl~~~~--~~~~~~l~~a~~~g 164 (793)
.....+...++..|..+.. ... ....+..+....++++++ +... .+...++++.++..
T Consensus 11 ~~~~~l~~~l~~~g~~v~~---~~~----------~~~a~~~~~~~~~dlil~-D~~l~~~~g~~~~~~l~~~~ 70 (121)
T 2pl1_A 11 LLRHHLKVQIQDAGHQVDD---AED----------AKEADYYLNEHIPDIAIV-DLGLPDEDGLSLIRRWRSND 70 (121)
T ss_dssp HHHHHHHHHHHHTTCEEEE---ESS----------HHHHHHHHHHSCCSEEEE-CSCCSSSCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhcCCEEEE---eCC----------HHHHHHHHhccCCCEEEE-ecCCCCCCHHHHHHHHHhcC
Confidence 3467777888877876431 111 223444555567898887 6543 24567777777654
No 314
>1i6a_A OXYR, hydrogen peroxide-inducible genes activator; OXYR regulatory domain, oxidized form, transcription; 2.30A {Escherichia coli} SCOP: c.94.1.1 PDB: 1i69_A
Probab=23.71 E-value=1.2e+02 Score=27.58 Aligned_cols=68 Identities=9% Similarity=0.031 Sum_probs=37.0
Q ss_pred ccCCHHHHHHHhhcCceEEEEechhhHHHHHhccCCceEEeC--ccccccceEEEecCCCcChHHHHHHHHhh
Q 003821 584 KVDHEYKYITDFESNRIAAAFLELSYERAFLSQHCKEYTATI--PTYRFGGFAFVFQKGSPLAADFSEAILKL 654 (793)
Q Consensus 584 ~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~c~~~~~~~--~~~~~~~~~~~~~k~spl~~~in~~i~~l 654 (793)
..++.+.....+..|..-+++-+..... ... . ..+.... .......++++.+++.+....+...+..+
T Consensus 134 ~~~~~~~~~~lv~~g~Gia~lp~~~~~~-~~~-~-~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~l 203 (219)
T 1i6a_A 134 RATSLETLRNMVAAGSGITLLPALAVPP-ERK-R-DGVVYLPAIKPEPRRTIGLVYRPGSPLRSRYEQLAEAI 203 (219)
T ss_dssp TTSCHHHHHHHHHTTSCBEEEEGGGSCS-SSE-E-TTEEEECEESSCCEEEEEEEECTTCTTHHHHHHHHHHH
T ss_pred eeCCHHHHHHHHHhCCCEEEeehhhhhh-hcc-C-CcEEEEECCCCcceEEEEEEECCCCCCCHHHHHHHHHH
Confidence 4567788888888887666655432211 111 1 1233322 11122357788888877666665555444
No 315
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=23.56 E-value=3.1e+02 Score=22.59 Aligned_cols=58 Identities=9% Similarity=0.037 Sum_probs=38.3
Q ss_pred cccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhc-CCceEEEEeccCh---HHHHHHHHHHHHc
Q 003821 92 TGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLR-TESRVFIILQSSL---AMGIHLFREAKEM 163 (793)
Q Consensus 92 ~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~-~~~~vivvl~~~~---~~~~~~l~~a~~~ 163 (793)
......+...|+..|..+... . +....+..+.+ ..++++++ +... .+...++++.++.
T Consensus 15 ~~~~~~l~~~L~~~g~~v~~~---~----------~~~~a~~~l~~~~~~dlvi~-D~~l~~~~~g~~~~~~l~~~ 76 (140)
T 3h5i_A 15 KFQAKTIANILNKYGYTVEIA---L----------TGEAAVEKVSGGWYPDLILM-DIELGEGMDGVQTALAIQQI 76 (140)
T ss_dssp HHHHHHHHHHHHHTTCEEEEE---S----------SHHHHHHHHHTTCCCSEEEE-ESSCSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCEEEEe---c----------ChHHHHHHHhcCCCCCEEEE-eccCCCCCCHHHHHHHHHhC
Confidence 345788888898888765421 1 12344555665 57899888 6653 4577788888775
No 316
>3ojc_A Putative aspartate/glutamate racemase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha beta; 1.75A {Yersinia pestis}
Probab=23.55 E-value=23 Score=33.96 Aligned_cols=40 Identities=13% Similarity=0.084 Sum_probs=22.1
Q ss_pred HHHHHHHhhcCceEEEEEEEcCCCccccccHHHHHHHHHhc-Ccee
Q 003821 65 TCTAALVGSYNWRKVIIIYEDDATNADTGNLALLSEALQIS-NSEI 109 (793)
Q Consensus 65 ~ai~~ll~~~~w~~vaii~~dd~~G~~~~~~~~l~~~l~~~-g~~v 109 (793)
++.++-+...+-++|+++.....-- ...+++.+++. |+++
T Consensus 107 ~~~~~~a~~~~~~rVgvLaT~~T~~-----s~~y~~~l~~~~g~~v 147 (231)
T 3ojc_A 107 DATAVQIKQQGIDKIGLLGTRYTME-----QGFYRGRLTEKHGIEV 147 (231)
T ss_dssp HHHHHHHHHTTCCEEEEESCHHHHH-----STTTHHHHHHTTCCEE
T ss_pred HHHHHHHHHcCCCEEEEEcCHHHhh-----chHHHHHHHhcCCCEE
Confidence 4444444445778999997663210 11234555566 7765
No 317
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=23.55 E-value=2.4e+02 Score=23.37 Aligned_cols=59 Identities=20% Similarity=0.236 Sum_probs=35.7
Q ss_pred cccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhh--cCCceEEEEeccCh--HHHHHHHHHHHHcC
Q 003821 92 TGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLL--RTESRVFIILQSSL--AMGIHLFREAKEMG 164 (793)
Q Consensus 92 ~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~vivvl~~~~--~~~~~~l~~a~~~g 164 (793)
......++..++..|..+... .. ....+..+. ...++++++ +... .+...+++++++..
T Consensus 13 ~~~~~~l~~~l~~~g~~v~~~---~~----------~~~a~~~~~~~~~~~dlvi~-d~~l~~~~g~~~~~~l~~~~ 75 (143)
T 3jte_A 13 STILQNIKFLLEIDGNEVLTA---SS----------STEGLRIFTENCNSIDVVIT-DMKMPKLSGMDILREIKKIT 75 (143)
T ss_dssp HHHHHHHHHHHHHTTCEEEEE---SS----------HHHHHHHHHHTTTTCCEEEE-ESCCSSSCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCCceEEEe---CC----------HHHHHHHHHhCCCCCCEEEE-eCCCCCCcHHHHHHHHHHhC
Confidence 335777888888888654321 11 223344454 457888887 6543 34667777777764
No 318
>2qip_A Protein of unknown function VPA0982; APC85975, vibrio parahaemolyticus RIMD 2210633, STR genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus}
Probab=23.52 E-value=3.8e+02 Score=23.54 Aligned_cols=96 Identities=10% Similarity=-0.103 Sum_probs=51.8
Q ss_pred HHHHHHHhhcCceEEEEEEEcCCCccccccHHHHHHHHHhcCceeeEEee--cCCCCCCCCChHHHHHHHHHhhcCCceE
Q 003821 65 TCTAALVGSYNWRKVIIIYEDDATNADTGNLALLSEALQISNSEIEYRLV--LPPISYLTDPKQFLQEKLLKLLRTESRV 142 (793)
Q Consensus 65 ~ai~~ll~~~~w~~vaii~~dd~~G~~~~~~~~l~~~l~~~g~~v~~~~~--~~~~~~~~~~~~~~~~~l~~l~~~~~~v 142 (793)
..+.+.+...+--..+..|.+ ..+ ......+.+.|...|+++...-. +.......+....+.-.+..+. ...+.
T Consensus 36 ~~l~~~~~~~g~l~~~~~Y~~-~~~--~~~~~~~~~~L~~~g~~v~~~p~~~~~~~~~k~~~Dv~laiD~~~~a-~~~d~ 111 (165)
T 2qip_A 36 NQFWYVATQEKEVVSAKAYAI-ASN--DPKQRQFHHILRGVGFEVMLKPYIQRRDGSAKGDWDVGITLDAIEIA-PDVDR 111 (165)
T ss_dssp HHHHHHHTTTEEEEEEEEEEC-CCC--CHHHHHHHHHHHHHTCEEEECCCCCCSSCCCSCCCHHHHHHHHHHHG-GGCSE
T ss_pred HHHHHHHhcCCEEEEEEEEEc-cCC--chhHHHHHHHHHHCCcEEEEEeeeeccCCccCCCccHHHHHHHHHhh-ccCCE
Confidence 345555555554445556633 222 24567788999999998764311 1111111122222221222232 35677
Q ss_pred EEEeccChHHHHHHHHHHHHc-CC
Q 003821 143 FIILQSSLAMGIHLFREAKEM-GL 165 (793)
Q Consensus 143 ivvl~~~~~~~~~~l~~a~~~-g~ 165 (793)
+++ .+.-.+...+++.+++. |.
T Consensus 112 ~vL-vSgD~DF~plv~~lr~~~G~ 134 (165)
T 2qip_A 112 VIL-VSGDGDFSLLVERIQQRYNK 134 (165)
T ss_dssp EEE-ECCCGGGHHHHHHHHHHHCC
T ss_pred EEE-EECChhHHHHHHHHHHHcCc
Confidence 777 56666888889999994 86
No 319
>2g2c_A Putative molybdenum cofactor biosynthesis protein; structural genomics, PSI, protein structure initiative; 1.50A {Corynebacterium diphtheriae} SCOP: c.57.1.1
Probab=23.43 E-value=1.4e+02 Score=26.58 Aligned_cols=62 Identities=27% Similarity=0.306 Sum_probs=37.9
Q ss_pred EEEEEEEcCC--Ccc-ccccHHHHHHH----HHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcCCceEEEE
Q 003821 78 KVIIIYEDDA--TNA-DTGNLALLSEA----LQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRTESRVFII 145 (793)
Q Consensus 78 ~vaii~~dd~--~G~-~~~~~~~l~~~----l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivv 145 (793)
+++||...|+ .|- .......+.+. +++.|.++.....++.. .+.+.+.+++..+.++|+||.
T Consensus 7 ~v~Ii~~GdEl~~G~i~D~n~~~l~~~~~~~l~~~G~~v~~~~iv~Dd------~~~I~~~l~~a~~~~~DlVit 75 (167)
T 2g2c_A 7 KSAIIVVSDRISTGTRENKALPLLQRLMSDELQDYSYELISEVVVPEG------YDTVVEAIATALKQGARFIIT 75 (167)
T ss_dssp EEEEEEECHHHHHTSSCCCHHHHHHHHHCC----CEEEEEEEEEECSS------HHHHHHHHHHHHHTTCSEEEE
T ss_pred EEEEEEECCcccCCceeccHHHHHHHhHHhHHHHCCCEEeEEEEeCCC------HHHHHHHHHHHHhCCCCEEEE
Confidence 6777776554 110 13345677888 88889887766555543 366777887776545888887
No 320
>1uuy_A CNX1, molybdopterin biosynthesis CNX1; chelatase, molybdenum cofactor biosynthesis; HET: MTE AMP; 1.45A {Arabidopsis thaliana} SCOP: c.57.1.1 PDB: 1o8q_A 1o8n_A 1o8o_A 1uux_A* 1eav_A
Probab=23.36 E-value=2.3e+02 Score=25.15 Aligned_cols=66 Identities=17% Similarity=0.155 Sum_probs=40.6
Q ss_pred eEEEEEEEcCC--Ccc-ccccHHHHHHHHHhc-----CceeeEEeecCCCCCCCCChHHHHHHHHHhhc-CCceEEEEec
Q 003821 77 RKVIIIYEDDA--TNA-DTGNLALLSEALQIS-----NSEIEYRLVLPPISYLTDPKQFLQEKLLKLLR-TESRVFIILQ 147 (793)
Q Consensus 77 ~~vaii~~dd~--~G~-~~~~~~~l~~~l~~~-----g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~-~~~~vivvl~ 147 (793)
-+|+||...|+ -|. .......+.+.+++. |.++.....++.. .+.+.+.+++..+ ..+|+||. .
T Consensus 6 ~rv~IistGde~~~G~~~d~n~~~l~~~l~~~~~~~~G~~v~~~~iv~Dd------~~~i~~~l~~~~~~~~~DlVit-t 78 (167)
T 1uuy_A 6 YKVAILTVSDTVSAGAGPDRSGPRAVSVVDSSSEKLGGAKVVATAVVPDE------VERIKDILQKWSDVDEMDLILT-L 78 (167)
T ss_dssp EEEEEEEECHHHHTTSSCCSHHHHHHHHHHHTTTTTTSEEEEEEEEECSC------HHHHHHHHHHHHHTSCCSEEEE-E
T ss_pred cEEEEEEECCcccCCCCccCcHHHHHHHHHhccccCCCcEEeEEEEcCCC------HHHHHHHHHHHHhcCCCCEEEE-C
Confidence 47788876554 220 011234566777777 8887766555533 3667888877664 47898887 4
Q ss_pred cC
Q 003821 148 SS 149 (793)
Q Consensus 148 ~~ 149 (793)
+.
T Consensus 79 GG 80 (167)
T 1uuy_A 79 GG 80 (167)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 321
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=23.34 E-value=2.9e+02 Score=22.16 Aligned_cols=58 Identities=12% Similarity=0.138 Sum_probs=36.5
Q ss_pred ccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcCCceEEEEeccCh--HHHHHHHHHHHHcC
Q 003821 93 GNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRTESRVFIILQSSL--AMGIHLFREAKEMG 164 (793)
Q Consensus 93 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivvl~~~~--~~~~~~l~~a~~~g 164 (793)
.....++..++..|..+.. ... ....+..+.+..++++++ +... .+...++++.++.+
T Consensus 14 ~~~~~l~~~l~~~~~~v~~---~~~----------~~~~~~~~~~~~~dlvi~-D~~l~~~~g~~~~~~l~~~~ 73 (126)
T 1dbw_A 14 PVRKSLAFMLTMNGFAVKM---HQS----------AEAFLAFAPDVRNGVLVT-DLRMPDMSGVELLRNLGDLK 73 (126)
T ss_dssp HHHHHHHHHHHHTTCEEEE---ESC----------HHHHHHHGGGCCSEEEEE-ECCSTTSCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCcEEEE---eCC----------HHHHHHHHhcCCCCEEEE-ECCCCCCCHHHHHHHHHhcC
Confidence 3467778888877876432 111 223455566668898887 6543 35667788887754
No 322
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=23.21 E-value=2.1e+02 Score=24.33 Aligned_cols=58 Identities=16% Similarity=0.183 Sum_probs=36.2
Q ss_pred ccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcCCceEEEEeccCh--HHHHHHHHHHHHcC
Q 003821 93 GNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRTESRVFIILQSSL--AMGIHLFREAKEMG 164 (793)
Q Consensus 93 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivvl~~~~--~~~~~~l~~a~~~g 164 (793)
.....+...++..|..+... . +....+..+....++++++ +... .....++++.++..
T Consensus 14 ~~~~~l~~~L~~~g~~v~~~---~----------~~~~a~~~l~~~~~dliil-d~~l~~~~g~~~~~~l~~~~ 73 (155)
T 1qkk_A 14 DLRKAMQQTLELAGFTVSSF---A----------SATEALAGLSADFAGIVIS-DIRMPGMDGLALFRKILALD 73 (155)
T ss_dssp HHHHHHHHHHHHTTCEEEEE---S----------CHHHHHHTCCTTCCSEEEE-ESCCSSSCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCcEEEEE---C----------CHHHHHHHHHhCCCCEEEE-eCCCCCCCHHHHHHHHHhhC
Confidence 34677888888888765421 1 1234455566667888887 6543 24567777777664
No 323
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=22.98 E-value=2.3e+02 Score=23.21 Aligned_cols=59 Identities=20% Similarity=0.220 Sum_probs=35.9
Q ss_pred cccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcCCceEEEEeccCh--HHHHHHHHHHHHcC
Q 003821 92 TGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRTESRVFIILQSSL--AMGIHLFREAKEMG 164 (793)
Q Consensus 92 ~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivvl~~~~--~~~~~~l~~a~~~g 164 (793)
......++..++..|..+.. ... ....+..+....++++++ +... .+...++++.++..
T Consensus 13 ~~~~~~l~~~L~~~g~~v~~---~~~----------~~~al~~~~~~~~dlvl~-D~~l~~~~g~~~~~~l~~~~ 73 (132)
T 3crn_A 13 TAILDSTKQILEFEGYEVEI---AAT----------AGEGLAKIENEFFNLALF-XIKLPDMEGTELLEKAHKLR 73 (132)
T ss_dssp HHHHHHHHHHHHHTTCEEEE---ESS----------HHHHHHHHHHSCCSEEEE-CSBCSSSBHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCceEEE---eCC----------HHHHHHHHhcCCCCEEEE-ecCCCCCchHHHHHHHHhhC
Confidence 33467788888877876531 111 223455556667898887 6543 24667777777654
No 324
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=22.86 E-value=1.3e+02 Score=29.22 Aligned_cols=78 Identities=8% Similarity=-0.037 Sum_probs=43.7
Q ss_pred eEEEEEEEc--CCCccccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHH---HHHHhhcCCceEEEEeccChH
Q 003821 77 RKVIIIYED--DATNADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQE---KLLKLLRTESRVFIILQSSLA 151 (793)
Q Consensus 77 ~~vaii~~d--d~~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~---~l~~l~~~~~~vivvl~~~~~ 151 (793)
+.|+++..+ +.|. ......+++.+++.|..+... .... +. ..... .+..+.+.+.|.+|+ .....
T Consensus 9 ~~Ig~i~~~~~~~~~--~~~~~gi~~~a~~~g~~~~~~---~~~~---~~-~~~~~~~~~~~~l~~~~vdgiIi-~~~~~ 78 (290)
T 2rgy_A 9 GIIGLFVPTFFGSYY--GTILKQTDLELRAVHRHVVVA---TGCG---ES-TPREQALEAVRFLIGRDCDGVVV-ISHDL 78 (290)
T ss_dssp CEEEEECSCSCSHHH--HHHHHHHHHHHHHTTCEEEEE---CCCS---SS-CHHHHHHHHHHHHHHTTCSEEEE-CCSSS
T ss_pred CeEEEEeCCCCCchH--HHHHHHHHHHHHHCCCEEEEE---eCCC---ch-hhhhhHHHHHHHHHhcCccEEEE-ecCCC
Confidence 467777654 2344 667778888888888775432 1111 11 22334 566666677888777 33221
Q ss_pred HHHHHHHHHHHcCC
Q 003821 152 MGIHLFREAKEMGL 165 (793)
Q Consensus 152 ~~~~~l~~a~~~g~ 165 (793)
. ...++.+.+.|+
T Consensus 79 ~-~~~~~~l~~~~i 91 (290)
T 2rgy_A 79 H-DEDLDELHRMHP 91 (290)
T ss_dssp C-HHHHHHHHHHCS
T ss_pred C-HHHHHHHhhcCC
Confidence 1 234555555554
No 325
>2y7p_A LYSR-type regulatory protein; transcription regulator, DNA-binding, transcription, transcr factor, transcription regulation; HET: SAL PEU; 1.85A {Burkholderia SP} PDB: 2y7k_A* 2y84_A 2y7w_A 2y7r_A
Probab=22.66 E-value=4.3e+02 Score=23.84 Aligned_cols=56 Identities=9% Similarity=-0.064 Sum_probs=37.4
Q ss_pred eeeHHHHHHHHHHC-CCccceeEE--------------EEeEEEecEEEecccccceeecccccccceEEEEecCCC
Q 003821 378 GYCIELFYKVLQVL-KYDLPYEFS--------------DYDAAIGDITILVNRTRFVEFSQPYTESGLSMVVPAKAE 439 (793)
Q Consensus 378 G~~~dll~~ia~~l-n~~~~~~~~--------------~~Di~~~~~~~t~~R~~~~dfs~p~~~~~~~~~v~~~~~ 439 (793)
.+-..++..+.++. +.+ +++. ++|++++.. +.....+++ .|+....+++++|...+
T Consensus 21 ~~lp~~l~~f~~~~P~v~--l~l~~~~~~~l~~~L~~g~iDl~i~~~---~~~~~~l~~-~~l~~~~~~~v~~~~hp 91 (218)
T 2y7p_A 21 YFMPPLMEALAQRAPHIQ--ISTLRPNAGNLKEDMESGAVDLALGLL---PELQTGFFQ-RRLFRHRYVCMFRKDHP 91 (218)
T ss_dssp HHHHHHHHHHHHHCTTCE--EEEECCCTTTHHHHHHHTSSCEEEECC---TTCCTTEEE-EEEEEECEEEEEETTCS
T ss_pred HHHHHHHHHHHHHCCCCE--EEEEeCCcccHHHHHhCCCceEEEecC---CCCCcceeE-EEeeeccEEEEEcCCCC
Confidence 56667788887776 445 5444 899997532 222233443 58889999999988765
No 326
>1jfl_A Aspartate racemase; alpha-beta structure, HOMO-dimer, homologous domains, isomer; 1.90A {Pyrococcus horikoshii} SCOP: c.78.2.1 c.78.2.1 PDB: 2dx7_A* 1iu9_A
Probab=22.60 E-value=54 Score=31.08 Aligned_cols=30 Identities=10% Similarity=0.109 Sum_probs=17.3
Q ss_pred CceEEEEEEEcCCCccccccHHHHHHHHHhcCcee
Q 003821 75 NWRKVIIIYEDDATNADTGNLALLSEALQISNSEI 109 (793)
Q Consensus 75 ~w~~vaii~~dd~~G~~~~~~~~l~~~l~~~g~~v 109 (793)
+-++|+|+..... -....+++.+++.|.++
T Consensus 115 ~~~rigvlaT~~T-----~~~~~y~~~l~~~g~~v 144 (228)
T 1jfl_A 115 GFKKAGLLATTGT-----IVSGVYEKEFSKYGVEI 144 (228)
T ss_dssp TCSEEEEECCHHH-----HHHTHHHHHHHHTTCEE
T ss_pred CCCeEEEEecHHH-----hhhhHHHHHHHHCCCeE
Confidence 6678888865532 11234566666777654
No 327
>2pfz_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.80A {Bordetella pertussis tohama I}
Probab=22.56 E-value=98 Score=30.71 Aligned_cols=56 Identities=11% Similarity=0.047 Sum_probs=38.7
Q ss_pred CCCCChHHhhhCCCcccccCchHHHHHHHhhcCCCCccccccCCHHHHHHHhhcCceEEEEech
Q 003821 544 PNVTDIGWLKASNLNVGFDGDSFVRNYLENVLGFKPENILKVDHEYKYITDFESNRIAAAFLEL 607 (793)
Q Consensus 544 ~~i~sl~dL~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~ 607 (793)
.+|+|++||+ |+++.+. ++.....++.. +. .- ......|...+|++|.+|+.....
T Consensus 128 ~pI~s~~Dlk--G~KiR~~-~~~~~~~~~~l-Ga---~p-v~~~~~E~y~ALq~G~vDg~~~~~ 183 (301)
T 2pfz_A 128 RDIKQVSDMK--GLKWRAY-SPVTAKIAELV-GA---QP-VTVQQAELAQAMATGVIDSYMSSG 183 (301)
T ss_dssp SCCSSGGGGT--TCEEEES-SHHHHHHHHHH-TC---EE-EECCGGGHHHHHHTTSCSEEEECH
T ss_pred CCCCChHHhc--CCEEecC-ChhHHHHHHHc-CC---cc-eecCHHHHHHHHhcCeeeEEecCc
Confidence 5899999999 8888876 44344444442 22 11 224667899999999999986543
No 328
>2vpn_A Periplasmic substrate binding protein; ectoine, hydroxyectoine, trap-transporter, periplasmic binding protein, transport; HET: 4CS; 1.55A {Halomonas elongata} PDB: 2vpo_A* 3gyy_A
Probab=22.45 E-value=82 Score=31.55 Aligned_cols=60 Identities=7% Similarity=-0.041 Sum_probs=41.8
Q ss_pred CCCCCChHHhhhCCCcccccCchHHHHHHHhhcCCCCccccccCCHHHHHHHhhcCceEEEEechhh
Q 003821 543 KPNVTDIGWLKASNLNVGFDGDSFVRNYLENVLGFKPENILKVDHEYKYITDFESNRIAAAFLELSY 609 (793)
Q Consensus 543 ~~~i~sl~dL~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~ 609 (793)
..+|+|++||+ |+++.+..+......++.. +.. - ......|...+|++|.+|+.......
T Consensus 129 ~~pI~s~~Dlk--G~KiR~~~~~~~~~~~~~l-Ga~---p-v~m~~~Evy~ALq~G~VDg~~~~~~~ 188 (316)
T 2vpn_A 129 DEPITSPEDFD--NKKIRTMTNPLLAETYKAF-GAT---P-TPLPWGEVYGGLQTGIIDGQENPIFW 188 (316)
T ss_dssp SSCCCSGGGGT--TCEEEECSCHHHHHHHHHH-TCE---E-EECCGGGHHHHHHHTSCSEEEEEHHH
T ss_pred CCCCCChHHhC--CCEEEeCCCHHHHHHHHHc-CCe---e-eecCHHHHHHHHHcCCcceeeCCHHH
Confidence 35899999999 8888876555445555543 221 1 22456788999999999998876443
No 329
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=22.21 E-value=2.7e+02 Score=31.76 Aligned_cols=65 Identities=14% Similarity=0.164 Sum_probs=46.7
Q ss_pred HHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcC-CceEEEEeccCh------HHHHHHHHHHHHcCCCC
Q 003821 95 LALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRT-ESRVFIILQSSL------AMGIHLFREAKEMGLVG 167 (793)
Q Consensus 95 ~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-~~~vivvl~~~~------~~~~~~l~~a~~~g~~~ 167 (793)
.+.+...|++.|.++... .+....+..+.+. .+++||+ +... .+...++++.++.+...
T Consensus 21 ~~~L~~~L~~~g~~v~~a-------------~~g~~al~~~~~~~~~d~vil-Di~lp~~~~~~~G~~ll~~iR~~~~~i 86 (755)
T 2vyc_A 21 VERLADALSQQNVTVIKS-------------TSFDDGFAILSSNEAIDCLMF-SYQMEHPDEHQNVRQLIGKLHERQQNV 86 (755)
T ss_dssp HHHHHHHHHHTTCEEEEE-------------SSHHHHHHHHTTTCCCSEEEE-ECCCCSHHHHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHhCCCEEEEE-------------CCHHHHHHHHhcCCCCcEEEE-eCCCCcccccccHHHHHHHHHHhCCCC
Confidence 788999999999886543 1234556666665 4899888 6654 45567999999987655
Q ss_pred CCeEEEEe
Q 003821 168 PDSVWVIA 175 (793)
Q Consensus 168 ~~~~wi~~ 175 (793)
| ++++|
T Consensus 87 P--Ii~lT 92 (755)
T 2vyc_A 87 P--VFLLG 92 (755)
T ss_dssp C--EEEEE
T ss_pred C--EEEEe
Confidence 5 77777
No 330
>1oj7_A Hypothetical oxidoreductase YQHD; structural genomics; HET: NZQ; 2.0A {Escherichia coli} SCOP: e.22.1.2
Probab=22.17 E-value=1.1e+02 Score=32.13 Aligned_cols=86 Identities=15% Similarity=0.202 Sum_probs=51.0
Q ss_pred HHHHHHhhcCceEEEEEEEcCCCccccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcCCceEEEE
Q 003821 66 CTAALVGSYNWRKVIIIYEDDATNADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRTESRVFII 145 (793)
Q Consensus 66 ai~~ll~~~~w~~vaii~~dd~~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivv 145 (793)
.+.+.++ +| +++.||+++.... ..+..+.+.+.|+ |+++. .++.... ..+.+.+.+.+..+++.++|+||.
T Consensus 42 ~l~~~l~-~g-~r~liVtd~~~~~-~~g~~~~v~~~L~--g~~~~---~f~~v~~-~p~~~~v~~~~~~~~~~~~D~IIa 112 (408)
T 1oj7_A 42 GLREQIP-HD-ARVLITYGGGSVK-KTGVLDQVLDALK--GMDVL---EFGGIEP-NPAYETLMNAVKLVREQKVTFLLA 112 (408)
T ss_dssp GHHHHSC-TT-CEEEEEECSSHHH-HHSHHHHHHHHTT--TSEEE---EECCCCS-SCBHHHHHHHHHHHHHHTCCEEEE
T ss_pred HHHHHHh-cC-CEEEEEECCchhh-hccHHHHHHHHhC--CCEEE---EeCCcCC-CcCHHHHHHHHHHHHHcCCCEEEE
Confidence 3556666 78 8999998665321 0235778888886 76643 3332210 112355677777788889999987
Q ss_pred ecc-ChHHHHHHHHHH
Q 003821 146 LQS-SLAMGIHLFREA 160 (793)
Q Consensus 146 l~~-~~~~~~~~l~~a 160 (793)
+.+ +.-++.+++...
T Consensus 113 vGGGsviD~AK~iA~~ 128 (408)
T 1oj7_A 113 VGGGSVLDGTKFIAAA 128 (408)
T ss_dssp EESHHHHHHHHHHHHH
T ss_pred eCCchHHHHHHHHHHH
Confidence 333 234555555443
No 331
>2esn_A Probable transcriptional regulator; PA0477, APC5828,transcription, PSI, protein struc initiative, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.37 c.94.1.1
Probab=22.10 E-value=5.3e+02 Score=24.72 Aligned_cols=105 Identities=8% Similarity=-0.095 Sum_probs=53.8
Q ss_pred CCChHHhhhCCCcccccC-----chHHHHHHHhhcCCCCccccccCCHHHHHHHhhcCceEEEEechhhHHHHHhccCCc
Q 003821 546 VTDIGWLKASNLNVGFDG-----DSFVRNYLENVLGFKPENILKVDHEYKYITDFESNRIAAAFLELSYERAFLSQHCKE 620 (793)
Q Consensus 546 i~sl~dL~~~~~~~g~~~-----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~c~~ 620 (793)
.-+++||. +.++-... ......++... +.........++.......+.+|..-+++-.. ........ .+
T Consensus 192 ~i~~~dL~--~~~~i~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~v~~g~Gia~lp~~-~~~~~~~~-~~- 265 (310)
T 2esn_A 192 APTLEGYL--AERHAVVTPWNEDSGVIDRLLARS-GLRREVAVQLPTVLAALFLAGSTDFLLTAPRH-AARALAEA-AG- 265 (310)
T ss_dssp SCCHHHHH--TSEEEEECTTCCSSCHHHHHHHHT-TCCCEEEEEESCHHHHHHHHHTSSCEEEEEHH-HHHHHHHH-HT-
T ss_pred CCCHHHHh--cCCcEEEeCCCCcccHHHHHHHhC-CCCeeEEEeCCCHHHHHHHHhcCCeEEEcHHH-HHHHHhhc-CC-
Confidence 35788887 44432211 12344555443 23333344567888888999998765555443 33322221 11
Q ss_pred eEEeC--ccccccceEEEecCCCcChHHHHHHHHhhhc
Q 003821 621 YTATI--PTYRFGGFAFVFQKGSPLAADFSEAILKLSE 656 (793)
Q Consensus 621 ~~~~~--~~~~~~~~~~~~~k~spl~~~in~~i~~l~e 656 (793)
+..+. .......++++.+++.+....+...+..+.+
T Consensus 266 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~ 303 (310)
T 2esn_A 266 LALYPAPFDIPPYVLRLYSHVQHVGRDAHAWMIGQLKG 303 (310)
T ss_dssp EEEECCSSCCCCEEEEEEEECC--CCHHHHHHHHHSCC
T ss_pred ceEecCCCCCCCeeEEEEEeCcccCCHHHHHHHHHHHH
Confidence 33222 2222346778888887666665555544443
No 332
>2dgd_A 223AA long hypothetical arylmalonate decarboxylas; octamer, alpha/beta structure, lyase; 2.90A {Sulfolobus tokodaii}
Probab=22.04 E-value=2.4e+02 Score=26.24 Aligned_cols=70 Identities=14% Similarity=0.095 Sum_probs=39.9
Q ss_pred cCce-EEEEEEEcCCCccccccHHHHHHHHHhcCceeeEEeec-CCCCCCCCChHH----HHHHHHHhhcCCceEEEEec
Q 003821 74 YNWR-KVIIIYEDDATNADTGNLALLSEALQISNSEIEYRLVL-PPISYLTDPKQF----LQEKLLKLLRTESRVFIILQ 147 (793)
Q Consensus 74 ~~w~-~vaii~~dd~~G~~~~~~~~l~~~l~~~g~~v~~~~~~-~~~~~~~~~~~~----~~~~l~~l~~~~~~vivvl~ 147 (793)
+||+ ++++|..+++ ......+...+. .++.+. ...+ +......+.-.+ +.+..+++.+. +|+|++ .
T Consensus 2 ~~~~~~IG~i~p~s~----~~~e~~~~~~~~-~~v~~~-~~r~~~~~~~~~~~~~~~~~~l~~~a~~L~~~-~d~ivi-~ 73 (223)
T 2dgd_A 2 PGGRGRIGVILPANN----AGMEYDLWKMAP-EGVSIH-STRMKPTKGCEPENVEEFEKELKYSYSLLAEV-SDIIIY-G 73 (223)
T ss_dssp CCSSEEEEEEEETTC----CSHHHHHHHHCC-TTEEEE-EEEECCCSSSSCSCHHHHHHHHHHHHHHHTTT-CSEEEE-C
T ss_pred CCCCceEEEEECCCc----ccHHHHHHHHcc-CCeEEE-EEeeecCCCCCHHHHHHHHHHHHHHHHHhhcc-CCEEEE-c
Confidence 6898 9999998876 334455665553 244432 2233 322211222222 34445667777 999999 8
Q ss_pred cChH
Q 003821 148 SSLA 151 (793)
Q Consensus 148 ~~~~ 151 (793)
|+..
T Consensus 74 Cnt~ 77 (223)
T 2dgd_A 74 RTYG 77 (223)
T ss_dssp CCTT
T ss_pred CCHH
Confidence 8744
No 333
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=22.04 E-value=84 Score=30.70 Aligned_cols=81 Identities=11% Similarity=0.087 Sum_probs=47.6
Q ss_pred CceEEEEEEEc--CCCccccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcCCceEEEEeccChHH
Q 003821 75 NWRKVIIIYED--DATNADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRTESRVFIILQSSLAM 152 (793)
Q Consensus 75 ~w~~vaii~~d--d~~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivvl~~~~~~ 152 (793)
.=++|+++..+ +.|. ......+++.+++.|.++.... ...+ .......+..+.+.+.|.+|+ ......
T Consensus 19 ~~~~Ig~i~~~~~~~~~--~~~~~gi~~~~~~~g~~~~~~~--~~~~-----~~~~~~~~~~l~~~~vdgii~-~~~~~~ 88 (293)
T 2iks_A 19 RTRSIGLVIPDLENTSY--TRIANYLERQARQRGYQLLIAC--SEDQ-----PDNEMRCIEHLLQRQVDAIIV-STSLPP 88 (293)
T ss_dssp CCCEEEEEESCSCSHHH--HHHHHHHHHHHHHTTCEEEEEE--CTTC-----HHHHHHHHHHHHHTTCSEEEE-CCSSCT
T ss_pred CCcEEEEEeCCCcCcHH--HHHHHHHHHHHHHCCCEEEEEc--CCCC-----HHHHHHHHHHHHHcCCCEEEE-eCCCCC
Confidence 44578888765 3354 6778888888989998765321 1111 133445667777778888887 433222
Q ss_pred HHHHHHHHHHcCC
Q 003821 153 GIHLFREAKEMGL 165 (793)
Q Consensus 153 ~~~~l~~a~~~g~ 165 (793)
...+++.+.+.|+
T Consensus 89 ~~~~~~~~~~~~i 101 (293)
T 2iks_A 89 EHPFYQRWANDPF 101 (293)
T ss_dssp TCHHHHTTTTSSS
T ss_pred cHHHHHHHHhCCC
Confidence 2234455544444
No 334
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=21.99 E-value=81 Score=30.75 Aligned_cols=79 Identities=9% Similarity=-0.056 Sum_probs=48.4
Q ss_pred ceEEEEEEEcCC--CccccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcCCceEEEEeccChHHH
Q 003821 76 WRKVIIIYEDDA--TNADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRTESRVFIILQSSLAMG 153 (793)
Q Consensus 76 w~~vaii~~dd~--~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivvl~~~~~~~ 153 (793)
=+.|+++..+.. |. ..+...+++.+++.|..+.... ... ........+..+.+.+.|.||+ ..... .
T Consensus 8 ~~~Igvv~~~~~~~~~--~~~~~gi~~~a~~~g~~~~~~~-~~~------~~~~~~~~~~~l~~~~vdgiIi-~~~~~-~ 76 (291)
T 3egc_A 8 SNVVGLIVSDIENVFF--AEVASGVESEARHKGYSVLLAN-TAE------DIVREREAVGQFFERRVDGLIL-APSEG-E 76 (291)
T ss_dssp CCEEEEEESCTTSHHH--HHHHHHHHHHHHHTTCEEEEEE-CTT------CHHHHHHHHHHHHHTTCSEEEE-CCCSS-C
T ss_pred CcEEEEEECCCcchHH--HHHHHHHHHHHHHCCCEEEEEe-CCC------CHHHHHHHHHHHHHCCCCEEEE-eCCCC-C
Confidence 357888876543 44 6778888888989998765431 111 1233455667777778888887 44322 3
Q ss_pred HHHHHHHHHcCC
Q 003821 154 IHLFREAKEMGL 165 (793)
Q Consensus 154 ~~~l~~a~~~g~ 165 (793)
...++.+.+.|+
T Consensus 77 ~~~~~~~~~~~i 88 (291)
T 3egc_A 77 HDYLRTELPKTF 88 (291)
T ss_dssp CHHHHHSSCTTS
T ss_pred hHHHHHhhccCC
Confidence 345555555554
No 335
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=21.98 E-value=2.3e+02 Score=22.72 Aligned_cols=59 Identities=14% Similarity=0.188 Sum_probs=35.0
Q ss_pred cccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcCCceEEEEeccCh--HHHHHHHHHHHHcC
Q 003821 92 TGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRTESRVFIILQSSL--AMGIHLFREAKEMG 164 (793)
Q Consensus 92 ~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivvl~~~~--~~~~~~l~~a~~~g 164 (793)
......++..++..|..+.. ... ....+..+.+..++++++ +... .+...++++.++..
T Consensus 13 ~~~~~~l~~~l~~~~~~v~~---~~~----------~~~a~~~~~~~~~dlvl~-D~~l~~~~g~~~~~~l~~~~ 73 (124)
T 1srr_A 13 SGIRILLNEVFNKEGYQTFQ---AAN----------GLQALDIVTKERPDLVLL-DMKIPGMDGIEILKRMKVID 73 (124)
T ss_dssp HHHHHHHHHHHHTTTCEEEE---ESS----------HHHHHHHHHHHCCSEEEE-ESCCTTCCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCcEEEE---eCC----------HHHHHHHHhccCCCEEEE-ecCCCCCCHHHHHHHHHHhC
Confidence 33567788888877876431 111 123344445557898887 6543 24567777777653
No 336
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=21.79 E-value=2.7e+02 Score=25.13 Aligned_cols=60 Identities=13% Similarity=0.105 Sum_probs=39.3
Q ss_pred cccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcCCceEEEEeccCh--HHHHHHHHHHHHcCC
Q 003821 92 TGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRTESRVFIILQSSL--AMGIHLFREAKEMGL 165 (793)
Q Consensus 92 ~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivvl~~~~--~~~~~~l~~a~~~g~ 165 (793)
......+...++..|.++.. .. +....+..+....+|++++ +... .+...++++.++..-
T Consensus 14 ~~~~~~l~~~L~~~g~~v~~---~~----------~~~~al~~~~~~~~dlvl~-D~~lp~~~g~~~~~~l~~~~~ 75 (208)
T 1yio_A 14 MSVREGLRNLLRSAGFEVET---FD----------CASTFLEHRRPEQHGCLVL-DMRMPGMSGIELQEQLTAISD 75 (208)
T ss_dssp HHHHHHHHHHHHTTTCEEEE---ES----------SHHHHHHHCCTTSCEEEEE-ESCCSSSCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhCCceEEE---cC----------CHHHHHHhhhccCCCEEEE-eCCCCCCCHHHHHHHHHhcCC
Confidence 34577888888888876542 11 1234455666678999887 6543 356778888887653
No 337
>2jfn_A Glutamate racemase; cell WALL, isomerase, cell shape, UDP- murnac-Ala, peptidoglycan biosynthesis, peptidoglycan synthesis; HET: GLU UMA; 1.9A {Escherichia coli}
Probab=21.67 E-value=2.8e+02 Score=27.16 Aligned_cols=33 Identities=9% Similarity=0.132 Sum_probs=24.9
Q ss_pred ccceEEEEcCCChhhHHHHHHhccCCCccEEee
Q 003821 4 EKEVKVIVGMETWGAATMVADIGSRAQVPVLSF 36 (793)
Q Consensus 4 ~~~V~aiiGp~~s~~~~~va~i~~~~~iP~Is~ 36 (793)
+.|+.+|+-+-++..+.++..+-+..++|+|..
T Consensus 82 ~~g~d~IviaCNTas~~~l~~lr~~~~iPVigi 114 (285)
T 2jfn_A 82 RYPLALAVVACNTASTVSLPALREKFDFPVVGV 114 (285)
T ss_dssp HSCCSEEEECCHHHHHHHHHHHHHHCSSCEECC
T ss_pred hCCCCEEEEECccccHHHHHHHHHhCCCCEEeh
Confidence 367888888777766667777777788999873
No 338
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=21.65 E-value=3.4e+02 Score=22.30 Aligned_cols=59 Identities=14% Similarity=0.237 Sum_probs=33.9
Q ss_pred cccHHHHHHHHHhcCc--eeeEEeecCCCCCCCCChHHHHHHHHHhhc------CCceEEEEeccCh--HHHHHHHHHHH
Q 003821 92 TGNLALLSEALQISNS--EIEYRLVLPPISYLTDPKQFLQEKLLKLLR------TESRVFIILQSSL--AMGIHLFREAK 161 (793)
Q Consensus 92 ~~~~~~l~~~l~~~g~--~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~------~~~~vivvl~~~~--~~~~~~l~~a~ 161 (793)
......+...++..|. .+... . +....+..+++ ..++++++ +... .....++++.+
T Consensus 17 ~~~~~~l~~~L~~~g~~~~v~~~---~----------~~~~a~~~l~~~~~~~~~~~dlii~-D~~l~~~~g~~~~~~l~ 82 (143)
T 2qvg_A 17 EVDIQSVERVFHKISSLIKIEIA---K----------SGNQALDMLYGRNKENKIHPKLILL-DINIPKMNGIEFLKELR 82 (143)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEE---S----------SHHHHHHHHHTCTTCCCCCCSEEEE-ETTCTTSCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCceEEEE---C----------CHHHHHHHHHhcccccCCCCCEEEE-ecCCCCCCHHHHHHHHH
Confidence 3346777888887776 43321 1 12233444544 56888887 6543 24567777777
Q ss_pred HcC
Q 003821 162 EMG 164 (793)
Q Consensus 162 ~~g 164 (793)
+..
T Consensus 83 ~~~ 85 (143)
T 2qvg_A 83 DDS 85 (143)
T ss_dssp TSG
T ss_pred cCc
Confidence 653
No 339
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=21.64 E-value=2.5e+02 Score=22.38 Aligned_cols=59 Identities=15% Similarity=0.118 Sum_probs=35.6
Q ss_pred cccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcCCceEEEEeccCh--HHHHHHHHHHHHcC
Q 003821 92 TGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRTESRVFIILQSSL--AMGIHLFREAKEMG 164 (793)
Q Consensus 92 ~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivvl~~~~--~~~~~~l~~a~~~g 164 (793)
......+...++..|.++.. ... ....+..+.+..++++++ +... .+...++++.++..
T Consensus 11 ~~~~~~l~~~L~~~~~~v~~---~~~----------~~~a~~~~~~~~~dlvi~-D~~l~~~~g~~~~~~l~~~~ 71 (124)
T 1mb3_A 11 ELNMKLFHDLLEAQGYETLQ---TRE----------GLSALSIARENKPDLILM-DIQLPEISGLEVTKWLKEDD 71 (124)
T ss_dssp HHHHHHHHHHHHHTTCEEEE---ESC----------HHHHHHHHHHHCCSEEEE-ESBCSSSBHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCcEEEE---eCC----------HHHHHHHHhcCCCCEEEE-eCCCCCCCHHHHHHHHHcCc
Confidence 33567788888888876532 111 123344455557898887 6543 34667788887753
No 340
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=21.60 E-value=1.9e+02 Score=23.85 Aligned_cols=59 Identities=17% Similarity=0.052 Sum_probs=36.8
Q ss_pred cccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcCCceEEEEeccCh--HHHHHHHHHHHHcC
Q 003821 92 TGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRTESRVFIILQSSL--AMGIHLFREAKEMG 164 (793)
Q Consensus 92 ~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivvl~~~~--~~~~~~l~~a~~~g 164 (793)
......+++.++..|..+... . +....+..+.+..++++++ +... .+...++++.++..
T Consensus 17 ~~~~~~l~~~L~~~~~~v~~~---~----------~~~~a~~~l~~~~~dlvi~-d~~l~~~~g~~~~~~l~~~~ 77 (137)
T 3hdg_A 17 TDAREWLSTIISNHFPEVWSA---G----------DGEEGERLFGLHAPDVIIT-DIRMPKLGGLEMLDRIKAGG 77 (137)
T ss_dssp HHHHHHHHHHHHTTCSCEEEE---S----------SHHHHHHHHHHHCCSEEEE-CSSCSSSCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCcEEEEE---C----------CHHHHHHHHhccCCCEEEE-eCCCCCCCHHHHHHHHHhcC
Confidence 335677888888766554322 1 1233455555567898888 6543 35677888888765
No 341
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=21.47 E-value=2.5e+02 Score=23.16 Aligned_cols=59 Identities=15% Similarity=0.198 Sum_probs=35.9
Q ss_pred cccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcCCceEEEEeccCh--HHHHHHHHHHHHcC
Q 003821 92 TGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRTESRVFIILQSSL--AMGIHLFREAKEMG 164 (793)
Q Consensus 92 ~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivvl~~~~--~~~~~~l~~a~~~g 164 (793)
......+...++..|..+.. ... ....+..+....++++++ +... .+...++++.++..
T Consensus 14 ~~~~~~l~~~L~~~g~~v~~---~~~----------~~~al~~~~~~~~dlvll-D~~l~~~~g~~l~~~l~~~~ 74 (136)
T 2qzj_A 14 KDNCQKLKGFLEEKGISIDL---AYN----------CEEAIGKIFSNKYDLIFL-EIILSDGDGWTLCKKIRNVT 74 (136)
T ss_dssp HHHHHHHHHHHHTTTCEEEE---ESS----------HHHHHHHHHHCCCSEEEE-ESEETTEEHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHCCCEEEE---ECC----------HHHHHHHHHhcCCCEEEE-eCCCCCCCHHHHHHHHccCC
Confidence 33567788888877776431 111 223445555567898887 6543 24667788777654
No 342
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=21.46 E-value=2.8e+02 Score=22.61 Aligned_cols=59 Identities=20% Similarity=0.227 Sum_probs=36.5
Q ss_pred cccHHHHHHHHHhcCc--eeeEEeecCCCCCCCCChHHHHHHHHHhhc-------CCceEEEEeccCh--HHHHHHHHHH
Q 003821 92 TGNLALLSEALQISNS--EIEYRLVLPPISYLTDPKQFLQEKLLKLLR-------TESRVFIILQSSL--AMGIHLFREA 160 (793)
Q Consensus 92 ~~~~~~l~~~l~~~g~--~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~-------~~~~vivvl~~~~--~~~~~~l~~a 160 (793)
......+...++..|. .+.. .. +....+..+.. ..++++++ +... .....++++.
T Consensus 12 ~~~~~~l~~~L~~~~~~~~v~~---~~----------~~~~a~~~l~~~~~~~~~~~~dlvi~-d~~~~~~~g~~~~~~l 77 (140)
T 1k68_A 12 KADIRLIQEALANSTVPHEVVT---VR----------DGMEAMAYLRQEGEYANASRPDLILL-XLNLPKKDGREVLAEI 77 (140)
T ss_dssp HHHHHHHHHHHHTCSSCCEEEE---EC----------SHHHHHHHHTTCGGGGSCCCCSEEEE-CSSCSSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCceEEE---EC----------CHHHHHHHHHcccccccCCCCcEEEE-ecCCCcccHHHHHHHH
Confidence 3357788888888887 3321 11 12334555554 57898887 6553 3566778888
Q ss_pred HHcC
Q 003821 161 KEMG 164 (793)
Q Consensus 161 ~~~g 164 (793)
++..
T Consensus 78 ~~~~ 81 (140)
T 1k68_A 78 KSDP 81 (140)
T ss_dssp HHST
T ss_pred HcCc
Confidence 8754
No 343
>3okf_A 3-dehydroquinate synthase; structural genomics, center for structural genomics of infec diseases, csgid, NAD, lyase; HET: NAD; 2.50A {Vibrio cholerae o1 biovar eltor}
Probab=21.14 E-value=3.3e+02 Score=28.13 Aligned_cols=113 Identities=14% Similarity=0.115 Sum_probs=65.2
Q ss_pred CeEEEecCChHHHHHHHHHHHhhcCceEEEEEEEcCCCccccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHH
Q 003821 51 PFLVRMANSSAEQITCTAALVGSYNWRKVIIIYEDDATNADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQE 130 (793)
Q Consensus 51 ~~~~r~~p~~~~~~~ai~~ll~~~~w~~vaii~~dd~~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~ 130 (793)
+|-+...+....+ +. +++..+.+++.||++...+ ....+.+.+.|++.|+++.. ..++.... ..+.+.+.+
T Consensus 41 ~y~I~~G~g~l~~---l~-~l~~~~~~rvlIVtd~~v~---~~~~~~v~~~L~~~g~~~~~-~~~~~gE~-~kt~~~v~~ 111 (390)
T 3okf_A 41 SYPISIGAGLFAN---PA-LLSLSAKQKVVIVTNHTVA---PLYAPAIISLLDHIGCQHAL-LELPDGEQ-YKTLETFNT 111 (390)
T ss_dssp CEEEEEETTGGGC---GG-GGCCCTTCEEEEEEETTTH---HHHHHHHHHHHHHHTCEEEE-EEECSSGG-GCBHHHHHH
T ss_pred CCCEEEeCCHHHh---HH-HHHhcCCCEEEEEECCcHH---HHHHHHHHHHHHHcCCeEEE-EEECCCcC-CchHHHHHH
Confidence 4545555553322 23 4555677999999988775 33678899999999987643 24444331 112345666
Q ss_pred HHHHhhcCCc---eEEEEeccC-hHHHHHHHHHHHHcCCCCCCeEEEEe
Q 003821 131 KLLKLLRTES---RVFIILQSS-LAMGIHLFREAKEMGLVGPDSVWVIA 175 (793)
Q Consensus 131 ~l~~l~~~~~---~vivvl~~~-~~~~~~~l~~a~~~g~~~~~~~wi~~ 175 (793)
.+..+++.+. ++||.+.+. .-++..++......| ..++-|-|
T Consensus 112 ~~~~l~~~~~~R~d~IIAvGGGsv~D~ak~~Aa~~~rg---ip~I~IPT 157 (390)
T 3okf_A 112 VMSFLLEHNYSRDVVVIALGGGVIGDLVGFAAACYQRG---VDFIQIPT 157 (390)
T ss_dssp HHHHHHHTTCCTTCEEEEEESHHHHHHHHHHHHHBTTC---CEEEEEEC
T ss_pred HHHHHHhcCCCcCcEEEEECCcHHhhHHHHHHHHhcCC---CCEEEeCC
Confidence 7777776665 677763222 234445544433333 33454555
No 344
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=21.06 E-value=2.8e+02 Score=22.56 Aligned_cols=59 Identities=19% Similarity=0.228 Sum_probs=36.4
Q ss_pred ccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcCCceEEEEeccCh--HHHHHHHHHHHHcCC
Q 003821 93 GNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRTESRVFIILQSSL--AMGIHLFREAKEMGL 165 (793)
Q Consensus 93 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivvl~~~~--~~~~~~l~~a~~~g~ 165 (793)
.....+...++..|..+.. ... ....+..+....++++++ +... .+...++++.++...
T Consensus 14 ~~~~~l~~~L~~~g~~v~~---~~~----------~~~a~~~~~~~~~dlvl~-D~~l~~~~g~~~~~~l~~~~~ 74 (136)
T 1mvo_A 14 SIVTLLQYNLERSGYDVIT---ASD----------GEEALKKAETEKPDLIVL-DVMLPKLDGIEVCKQLRQQKL 74 (136)
T ss_dssp HHHHHHHHHHHHTTCEEEE---ESS----------HHHHHHHHHHHCCSEEEE-ESSCSSSCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHCCcEEEE---ecC----------HHHHHHHHhhcCCCEEEE-ecCCCCCCHHHHHHHHHcCCC
Confidence 3467788888888876432 111 223344455567898887 6543 246778888887653
No 345
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=21.00 E-value=1.6e+02 Score=29.49 Aligned_cols=78 Identities=12% Similarity=0.030 Sum_probs=50.7
Q ss_pred eEEEEEEEc--CCCccccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcCCceEEEEeccChHHHH
Q 003821 77 RKVIIIYED--DATNADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRTESRVFIILQSSLAMGI 154 (793)
Q Consensus 77 ~~vaii~~d--d~~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivvl~~~~~~~~ 154 (793)
+.|+++..+ +.|. ......+++.+++.|..+... ....+ .......+..+.+.+.|.+|+ ..... ..
T Consensus 69 ~~Ig~i~~~~~~~~~--~~~~~gi~~~a~~~g~~~~~~--~~~~~-----~~~~~~~i~~l~~~~vdGiIi-~~~~~-~~ 137 (344)
T 3kjx_A 69 NLVAVIIPSLSNMVF--PEVLTGINQVLEDTELQPVVG--VTDYL-----PEKEEKVLYEMLSWRPSGVII-AGLEH-SE 137 (344)
T ss_dssp SEEEEEESCSSSSSH--HHHHHHHHHHHTSSSSEEEEE--ECTTC-----HHHHHHHHHHHHTTCCSEEEE-ECSCC-CH
T ss_pred CEEEEEeCCCCcHHH--HHHHHHHHHHHHHCCCEEEEE--eCCCC-----HHHHHHHHHHHHhCCCCEEEE-ECCCC-CH
Confidence 478998865 3455 778889999999999886532 11111 233456677777788999888 33222 22
Q ss_pred HHHHHHHHcCC
Q 003821 155 HLFREAKEMGL 165 (793)
Q Consensus 155 ~~l~~a~~~g~ 165 (793)
..++.+.+.|+
T Consensus 138 ~~~~~l~~~~i 148 (344)
T 3kjx_A 138 AARAMLDAAGI 148 (344)
T ss_dssp HHHHHHHHCSS
T ss_pred HHHHHHHhCCC
Confidence 55666777665
No 346
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=20.77 E-value=3.1e+02 Score=21.60 Aligned_cols=61 Identities=11% Similarity=0.129 Sum_probs=36.8
Q ss_pred cccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcCCceEEEEeccCh--HHHHHHHHHHHHcCC
Q 003821 92 TGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRTESRVFIILQSSL--AMGIHLFREAKEMGL 165 (793)
Q Consensus 92 ~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivvl~~~~--~~~~~~l~~a~~~g~ 165 (793)
......++..++..|.++... ... ....+..+.+..++++++ +... .+...++++.++.+.
T Consensus 12 ~~~~~~l~~~l~~~g~~vv~~--~~~----------~~~a~~~~~~~~~dlil~-D~~l~~~~g~~~~~~l~~~~~ 74 (120)
T 1tmy_A 12 AFMRMMLKDIITKAGYEVAGE--ATN----------GREAVEKYKELKPDIVTM-DITMPEMNGIDAIKEIMKIDP 74 (120)
T ss_dssp HHHHHHHHHHHHHTTCEEEEE--ESS----------HHHHHHHHHHHCCSEEEE-ECSCGGGCHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHhhcCcEEEEE--ECC----------HHHHHHHHHhcCCCEEEE-eCCCCCCcHHHHHHHHHhhCC
Confidence 335677888888888764322 111 223344455557898887 6543 346677888877653
No 347
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=20.72 E-value=1.5e+02 Score=28.59 Aligned_cols=78 Identities=6% Similarity=-0.039 Sum_probs=46.8
Q ss_pred ceEEEEEEEc--CCCccccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcCCceEEEEeccChHHH
Q 003821 76 WRKVIIIYED--DATNADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRTESRVFIILQSSLAMG 153 (793)
Q Consensus 76 w~~vaii~~d--d~~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivvl~~~~~~~ 153 (793)
=++|+++..+ +.|. ......+++.+++.|..+.... ...+ .......+..+.+.+.|.+|+ ......
T Consensus 8 ~~~Igvi~~~~~~~~~--~~~~~gi~~~~~~~g~~~~~~~--~~~~-----~~~~~~~~~~l~~~~vdgiI~-~~~~~~- 76 (285)
T 3c3k_A 8 TGMLLVMVSNIANPFC--AAVVKGIEKTAEKNGYRILLCN--TESD-----LARSRSCLTLLSGKMVDGVIT-MDALSE- 76 (285)
T ss_dssp CCEEEEEESCTTSHHH--HHHHHHHHHHHHHTTCEEEEEE--CTTC-----HHHHHHHTHHHHTTCCSEEEE-CCCGGG-
T ss_pred CCEEEEEeCCCCCchH--HHHHHHHHHHHHHcCCEEEEEe--CCCC-----HHHHHHHHHHHHhCCCCEEEE-eCCCCC-
Confidence 3578888864 3355 7778888999999998765331 1111 123345567777778998888 433221
Q ss_pred HHHHHHHHHcCC
Q 003821 154 IHLFREAKEMGL 165 (793)
Q Consensus 154 ~~~l~~a~~~g~ 165 (793)
...++.+. .|+
T Consensus 77 ~~~~~~l~-~~i 87 (285)
T 3c3k_A 77 LPELQNII-GAF 87 (285)
T ss_dssp HHHHHHHH-TTS
T ss_pred hHHHHHHh-cCC
Confidence 23345554 444
No 348
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=20.65 E-value=73 Score=31.28 Aligned_cols=78 Identities=10% Similarity=0.017 Sum_probs=46.9
Q ss_pred eEEEEEEE-------cCCCccccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcCCceEEEEeccC
Q 003821 77 RKVIIIYE-------DDATNADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRTESRVFIILQSS 149 (793)
Q Consensus 77 ~~vaii~~-------dd~~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivvl~~~ 149 (793)
+.|++|.. ++.|. ..++..+++.+++.|..+... .... ........+..+.+.+.|.+|+ ...
T Consensus 8 ~~Igvi~~~~~~~~~~~~f~--~~~~~gi~~~a~~~g~~~~~~---~~~~----~~~~~~~~~~~l~~~~vdGiI~-~~~ 77 (295)
T 3hcw_A 8 YKIGLVLKGSEEPIRLNPFY--INVLLGISETCNQHGYGTQTT---VSNN----MNDLMDEVYKMIKQRMVDAFIL-LYS 77 (295)
T ss_dssp CEEEEECSCCCHHHHSCHHH--HHHHHHHHHHHHTTTCEEEEC---CCCS----HHHHHHHHHHHHHTTCCSEEEE-SCC
T ss_pred cEEEEEeecCCcccccChHH--HHHHHHHHHHHHHCCCEEEEE---cCCC----ChHHHHHHHHHHHhCCcCEEEE-cCc
Confidence 56888872 23454 677888889999999876422 1111 1122344566677778898888 332
Q ss_pred hHHHHHHHHHHHHcCC
Q 003821 150 LAMGIHLFREAKEMGL 165 (793)
Q Consensus 150 ~~~~~~~l~~a~~~g~ 165 (793)
. .....++.+.+.|+
T Consensus 78 ~-~~~~~~~~l~~~~i 92 (295)
T 3hcw_A 78 K-ENDPIKQMLIDESM 92 (295)
T ss_dssp C-TTCHHHHHHHHTTC
T ss_pred c-cChHHHHHHHhCCC
Confidence 2 12245666666665
No 349
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=20.59 E-value=1.5e+02 Score=29.62 Aligned_cols=81 Identities=14% Similarity=0.054 Sum_probs=50.9
Q ss_pred cCceEEEEEEEc--CCCccccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcCCceEEEEeccChH
Q 003821 74 YNWRKVIIIYED--DATNADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRTESRVFIILQSSLA 151 (793)
Q Consensus 74 ~~w~~vaii~~d--d~~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivvl~~~~~ 151 (793)
-.-+.|+++..+ +.|. ..+...+++.+++.|..+.... ...+ .......+..+.+.+.|.+|+......
T Consensus 60 ~~~~~Igvi~~~~~~~~~--~~~~~gi~~~a~~~g~~~~~~~--~~~~-----~~~~~~~~~~l~~~~vdGiIi~~~~~~ 130 (339)
T 3h5o_A 60 AKSRTVLVLIPSLANTVF--LETLTGIETVLDAAGYQMLIGN--SHYD-----AGQELQLLRAYLQHRPDGVLITGLSHA 130 (339)
T ss_dssp ---CEEEEEESCSTTCTT--HHHHHHHHHHHHHTTCEEEEEE--CTTC-----HHHHHHHHHHHHTTCCSEEEEECSCCC
T ss_pred CCCCEEEEEeCCCCCHHH--HHHHHHHHHHHHHCCCEEEEEe--CCCC-----hHHHHHHHHHHHcCCCCEEEEeCCCCC
Confidence 344679998865 3355 7889999999999998865321 1111 233456677778789999888332222
Q ss_pred HHHHHHHHHHHcCC
Q 003821 152 MGIHLFREAKEMGL 165 (793)
Q Consensus 152 ~~~~~l~~a~~~g~ 165 (793)
...++.+.+.|+
T Consensus 131 --~~~~~~l~~~~i 142 (339)
T 3h5o_A 131 --EPFERILSQHAL 142 (339)
T ss_dssp --TTHHHHHHHTTC
T ss_pred --HHHHHHHhcCCC
Confidence 245666666665
No 350
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=20.52 E-value=1.8e+02 Score=25.79 Aligned_cols=60 Identities=12% Similarity=0.029 Sum_probs=36.8
Q ss_pred cccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcCCceEEEEeccCh--HHHHHHHHHHHHcCC
Q 003821 92 TGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRTESRVFIILQSSL--AMGIHLFREAKEMGL 165 (793)
Q Consensus 92 ~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivvl~~~~--~~~~~~l~~a~~~g~ 165 (793)
......+...++..|..+.. .. +....+..+....+|++++ +... .++..++++.++..-
T Consensus 17 ~~~~~~l~~~L~~~g~~v~~---~~----------~~~~al~~~~~~~~dlvl~-D~~lp~~~g~~~~~~l~~~~~ 78 (184)
T 3rqi_A 17 EVFAGTLARGLERRGYAVRQ---AH----------NKDEALKLAGAEKFEFITV-XLHLGNDSGLSLIAPLCDLQP 78 (184)
T ss_dssp HHHHHHHHHHHHHTTCEEEE---EC----------SHHHHHHHHTTSCCSEEEE-CSEETTEESHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHCCCEEEE---eC----------CHHHHHHHHhhCCCCEEEE-eccCCCccHHHHHHHHHhcCC
Confidence 33567788888887875421 11 1234556666677888887 6543 345677777777543
No 351
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=20.47 E-value=1e+02 Score=29.57 Aligned_cols=78 Identities=9% Similarity=0.078 Sum_probs=46.3
Q ss_pred eEEEEEEEc--CCCccccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcCCceEEEEeccChHHHH
Q 003821 77 RKVIIIYED--DATNADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRTESRVFIILQSSLAMGI 154 (793)
Q Consensus 77 ~~vaii~~d--d~~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivvl~~~~~~~~ 154 (793)
++|+++..+ +.|. ......+++.+++.|..+... . ... ........+..+...+.|.+|+.....+ .
T Consensus 4 ~~Ig~i~~~~~~~~~--~~~~~gi~~~~~~~g~~~~~~-~-~~~-----~~~~~~~~~~~l~~~~vdgii~~~~~~~--~ 72 (275)
T 3d8u_A 4 YSIALIIPSLFEKAC--AHFLPSFQQALNKAGYQLLLG-Y-SDY-----SIEQEEKLLSTFLESRPAGVVLFGSEHS--Q 72 (275)
T ss_dssp CEEEEEESCSSCHHH--HHHHHHHHHHHHHTSCEECCE-E-CTT-----CHHHHHHHHHHHHTSCCCCEEEESSCCC--H
T ss_pred eEEEEEeCCCccccH--HHHHHHHHHHHHHCCCEEEEE-c-CCC-----CHHHHHHHHHHHHhcCCCEEEEeCCCCC--H
Confidence 467888764 2354 677888888899999875432 1 111 1133445567777778888777333222 2
Q ss_pred HHHHHHHHcCC
Q 003821 155 HLFREAKEMGL 165 (793)
Q Consensus 155 ~~l~~a~~~g~ 165 (793)
..++.+.+.|+
T Consensus 73 ~~~~~l~~~~i 83 (275)
T 3d8u_A 73 RTHQLLEASNT 83 (275)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHhCCC
Confidence 44556666554
No 352
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=20.45 E-value=2e+02 Score=23.09 Aligned_cols=58 Identities=9% Similarity=0.070 Sum_probs=36.5
Q ss_pred ccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcCCceEEEEeccCh--HHHHHHHHHHHHcC
Q 003821 93 GNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRTESRVFIILQSSL--AMGIHLFREAKEMG 164 (793)
Q Consensus 93 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivvl~~~~--~~~~~~l~~a~~~g 164 (793)
.....+...++..|..+.. ... ....+..+.+..++++++ +... .+...++++.++..
T Consensus 13 ~~~~~l~~~l~~~g~~v~~---~~~----------~~~a~~~~~~~~~dlvi~-D~~l~~~~g~~~~~~l~~~~ 72 (127)
T 2jba_A 13 PIREMVCFVLEQNGFQPVE---AED----------YDSAVNQLNEPWPDLILL-AWMLPGGSGIQFIKHLRRES 72 (127)
T ss_dssp HHHHHHHHHHHHTTCEEEE---ECS----------HHHHHTTCSSSCCSEEEE-ESEETTEEHHHHHHHHHTST
T ss_pred HHHHHHHHHHHHCCceEEE---eCC----------HHHHHHHHhccCCCEEEE-ecCCCCCCHHHHHHHHHhCc
Confidence 3467788888888876432 111 233455566667898887 6543 35677888887654
No 353
>2xwv_A Sialic acid-binding periplasmic protein SIAP; transport protein, trap, sugar transport; HET: SLB; 1.05A {Haemophilus influenzae} PDB: 2xxk_A* 2xa5_A* 2wyp_A* 2wx9_A* 2xwo_A* 2xwk_A* 2v4c_A* 2wyk_A* 2xwi_A* 3b50_A* 2cey_A 2cex_A
Probab=20.40 E-value=96 Score=31.04 Aligned_cols=60 Identities=13% Similarity=0.066 Sum_probs=41.9
Q ss_pred CCCCChHHhhhCCCcccccCchHHHHHHHhhcCCCCccccccCCHHHHHHHhhcCceEEEEechhhH
Q 003821 544 PNVTDIGWLKASNLNVGFDGDSFVRNYLENVLGFKPENILKVDHEYKYITDFESNRIAAAFLELSYE 610 (793)
Q Consensus 544 ~~i~sl~dL~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~ 610 (793)
.+|+|++||+ |+++.+.........++.. +.. .......|...+|++|.+|+.....+..
T Consensus 133 ~pI~s~~Dlk--GlKiRv~~~~~~~~~~~al-Ga~----pv~m~~~Evy~ALq~G~vDg~~~~~~~~ 192 (312)
T 2xwv_A 133 RAINSIADMK--GLKLRVPNAATNLAYAKYV-GAS----PTPMAFSEVYLALQTNAVDGQENPLAAV 192 (312)
T ss_dssp SCCCSGGGGT--TCEEEECSCHHHHHHHHHH-TCE----EEECCGGGHHHHHHTTSSSEEEEEHHHH
T ss_pred CCcCCHHHhC--CCEEEeCCCHHHHHHHHHc-CCe----eeecCHHHHHHHHHcCCcceEeccHHHH
Confidence 5899999999 8888876654333444442 221 1224567889999999999998876555
No 354
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=20.40 E-value=3e+02 Score=23.06 Aligned_cols=61 Identities=10% Similarity=0.050 Sum_probs=37.2
Q ss_pred cccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcCCceEEEEeccCh--HHHHHHHHHHHHcC
Q 003821 92 TGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRTESRVFIILQSSL--AMGIHLFREAKEMG 164 (793)
Q Consensus 92 ~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivvl~~~~--~~~~~~l~~a~~~g 164 (793)
....+.+...++..|...... ... +....+..+.+..++++++ +... .+...++++.++..
T Consensus 30 ~~~~~~l~~~L~~~~~~~~v~-~~~----------~~~~al~~l~~~~~dlii~-D~~l~~~~g~~~~~~l~~~~ 92 (150)
T 4e7p_A 30 SMLRDAMCQLLTLQPDVESVL-QAK----------NGQEAIQLLEKESVDIAIL-DVEMPVKTGLEVLEWIRSEK 92 (150)
T ss_dssp HHHHHHHHHHHHTSTTEEEEE-EES----------SHHHHHHHHTTSCCSEEEE-CSSCSSSCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCCcEEEE-EEC----------CHHHHHHHhhccCCCEEEE-eCCCCCCcHHHHHHHHHHhC
Confidence 345777888888776321111 111 1334566677778998887 6543 45677888888764
No 355
>1jlj_A Gephyrin; globular alpha/beta fold, structural protein; 1.60A {Homo sapiens} SCOP: c.57.1.1 PDB: 1ihc_A
Probab=20.36 E-value=1.3e+02 Score=27.54 Aligned_cols=69 Identities=14% Similarity=0.141 Sum_probs=43.1
Q ss_pred cCceEEEEEEEcCC--Ccc-ccccHHHHHHHHHh---cCceeeEEeecCCCCCCCCChHHHHHHHHHhhc-CCceEEEEe
Q 003821 74 YNWRKVIIIYEDDA--TNA-DTGNLALLSEALQI---SNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLR-TESRVFIIL 146 (793)
Q Consensus 74 ~~w~~vaii~~dd~--~G~-~~~~~~~l~~~l~~---~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~-~~~~vivvl 146 (793)
+.--+++||...|+ .|. .......+.+.+++ .|.++.....++... +.+.+.+.+..+ ..+|+||.
T Consensus 12 ~~~~rv~IistGdEl~~g~~~D~n~~~L~~~L~~~~~~G~~v~~~~iv~Dd~------~~I~~al~~a~~~~~~DlVIt- 84 (189)
T 1jlj_A 12 DHQIRVGVLTVSDSCFRNLAEDRSGINLKDLVQDPSLLGGTISAYKIVPDEI------EEIKETLIDWCDEKELNLILT- 84 (189)
T ss_dssp -CCCEEEEEEECHHHHTTSSCCHHHHHHHHHHHCTTTTCCEEEEEEEECSCH------HHHHHHHHHHHHTSCCSEEEE-
T ss_pred cCCCEEEEEEECCccCCCcccchHHHHHHHHHhchhcCCcEEEEEEEeCCCH------HHHHHHHHHHhhcCCCCEEEE-
Confidence 33347788877654 220 03345678888887 788877665555433 667778877654 36898887
Q ss_pred ccC
Q 003821 147 QSS 149 (793)
Q Consensus 147 ~~~ 149 (793)
.+.
T Consensus 85 tGG 87 (189)
T 1jlj_A 85 TGG 87 (189)
T ss_dssp ESC
T ss_pred cCC
Confidence 443
No 356
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=20.33 E-value=2.4e+02 Score=26.56 Aligned_cols=59 Identities=19% Similarity=0.231 Sum_probs=36.4
Q ss_pred ccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcCCceEEEEeccCh--HHHHHHHHHHHHcCC
Q 003821 93 GNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRTESRVFIILQSSL--AMGIHLFREAKEMGL 165 (793)
Q Consensus 93 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivvl~~~~--~~~~~~l~~a~~~g~ 165 (793)
.....+...|+..|.++... . +....+..+....+|++++ +... .+...++++.++.+.
T Consensus 34 ~~~~~l~~~L~~~g~~v~~~---~----------~~~~al~~~~~~~~dlvll-D~~lp~~~g~~~~~~lr~~~~ 94 (250)
T 3r0j_A 34 NIVELLSVSLKFQGFEVYTA---T----------NGAQALDRARETRPDAVIL-DVXMPGMDGFGVLRRLRADGI 94 (250)
T ss_dssp HHHHHHHHHHHHTTCEEEEE---S----------SHHHHHHHHHHHCCSEEEE-ESCCSSSCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHCCCEEEEE---C----------CHHHHHHHHHhCCCCEEEE-eCCCCCCCHHHHHHHHHhcCC
Confidence 34677788888778765421 1 1223445555567888887 6543 356777888877654
No 357
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=20.29 E-value=1.8e+02 Score=25.85 Aligned_cols=62 Identities=16% Similarity=0.149 Sum_probs=40.7
Q ss_pred eEEEEEEEcCC--Cc-cccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcCCceEEEE
Q 003821 77 RKVIIIYEDDA--TN-ADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRTESRVFII 145 (793)
Q Consensus 77 ~~vaii~~dd~--~G-~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivv 145 (793)
-+|+||...|+ .| -.......+...+++.|.++.....++ |. +.+.+.+.+..+.++|+||.
T Consensus 8 ~rv~ii~tGdEl~~G~i~Dsn~~~l~~~l~~~G~~v~~~~iv~------Dd-~~i~~al~~a~~~~~DlVit 72 (164)
T 3pzy_A 8 RSARVIIASTRASSGEYEDRCGPIITEWLAQQGFSSAQPEVVA------DG-SPVGEALRKAIDDDVDVILT 72 (164)
T ss_dssp CEEEEEEECHHHHC----CCHHHHHHHHHHHTTCEECCCEEEC------SS-HHHHHHHHHHHHTTCSEEEE
T ss_pred CEEEEEEECCCCCCCceeeHHHHHHHHHHHHCCCEEEEEEEeC------CH-HHHHHHHHHHHhCCCCEEEE
Confidence 46788877654 12 013456778888999998876554443 33 56777777766557898887
No 358
>3r8n_P 30S ribosomal protein S16; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 1p6g_P 1p87_P* 1vs7_P* 2avy_P 2aw7_P 1vs5_P 2i2u_P 2i2p_P* 2qan_P* 2qb9_P* 2qbb_P* 2qbd_P 2qbf_P 2qbh_P* 2qbj_P* 2qou_P* 2qow_P* 2qoy_P* 2qp0_P* 2vho_P ...
Probab=20.23 E-value=1.9e+02 Score=22.35 Aligned_cols=35 Identities=11% Similarity=0.233 Sum_probs=26.0
Q ss_pred eEEEeCCCcCCCCcEEEEEeec------ceeEEEEEecCCC
Q 003821 265 PISFRGGKLLNSPILRIINMVG------KKYKEIDFWLPKF 299 (793)
Q Consensus 265 ~i~Fd~~g~~~~~~~~I~~~~~------~~~~~VG~w~~~~ 299 (793)
.|++.-.|....+-|.|+-... .-.++||+|+|..
T Consensus 3 kIRL~R~G~kk~PfYrIVvadsr~~RdGr~IE~lG~YnP~~ 43 (82)
T 3r8n_P 3 TIRLARHGAKKRPFYQVVVADSRNARNGRFIERVGFFNPIA 43 (82)
T ss_dssp EEEEEECSCTTSCCEEEEEEETTSCTTSCEEEEEEEECTTC
T ss_pred EEhhhcCCCCCCCEEEEEEeecCCCCCCCceeeeeEEcCCC
Confidence 3667777777778888887763 2368999999954
No 359
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=20.23 E-value=89 Score=30.47 Aligned_cols=80 Identities=10% Similarity=-0.025 Sum_probs=44.6
Q ss_pred CceEEEEEEEcC----CCccccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcCCceEEEEeccCh
Q 003821 75 NWRKVIIIYEDD----ATNADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRTESRVFIILQSSL 150 (793)
Q Consensus 75 ~w~~vaii~~dd----~~G~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivvl~~~~ 150 (793)
+=+.|+++..+. .|. ..+...+++.+++.|..+.... ..... ......+..+.+.+.|.+|+.....
T Consensus 7 ~s~~Igvv~~~~~~~~~~~--~~~~~gi~~~a~~~g~~~~~~~-~~~~~------~~~~~~~~~l~~~~vdgiIi~~~~~ 77 (288)
T 3gv0_A 7 KTNVIALVLSVDEELMGFT--SQMVFGITEVLSTTQYHLVVTP-HIHAK------DSMVPIRYILETGSADGVIISKIEP 77 (288)
T ss_dssp CCCEEEEECBCCCCSSCHH--HHHHHHHHHHHTTSSCEEEECC-BSSGG------GTTHHHHHHHHHTCCSEEEEESCCT
T ss_pred CCCEEEEEecCCccccHHH--HHHHHHHHHHHHHcCCEEEEec-CCcch------hHHHHHHHHHHcCCccEEEEecCCC
Confidence 345788887752 444 6778888888888888765331 11111 1122233335556788887732222
Q ss_pred HHHHHHHHHHHHcCC
Q 003821 151 AMGIHLFREAKEMGL 165 (793)
Q Consensus 151 ~~~~~~l~~a~~~g~ 165 (793)
. ...++.+.+.|+
T Consensus 78 ~--~~~~~~l~~~~i 90 (288)
T 3gv0_A 78 N--DPRVRFMTERNM 90 (288)
T ss_dssp T--CHHHHHHHHTTC
T ss_pred C--cHHHHHHhhCCC
Confidence 2 244566666665
No 360
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=20.13 E-value=3.6e+02 Score=22.51 Aligned_cols=72 Identities=14% Similarity=0.195 Sum_probs=40.3
Q ss_pred cccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhh---------cCCceEEEEeccC--hHHHHHHHHHH
Q 003821 92 TGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLL---------RTESRVFIILQSS--LAMGIHLFREA 160 (793)
Q Consensus 92 ~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~~vivvl~~~--~~~~~~~l~~a 160 (793)
......+++.++..|...... .... ....+..++ ...+++|++ +.. ..+...++++.
T Consensus 14 ~~~~~~l~~~L~~~g~~~~v~-~~~~----------~~~al~~l~~~~~~~~~~~~~~dliil-D~~l~~~~g~~~~~~l 81 (152)
T 3heb_A 14 LGHARLIEKNIRRAGVNNEII-AFTD----------GTSALNYLFGDDKSGRVSAGRAQLVLL-DLNLPDMTGIDILKLV 81 (152)
T ss_dssp HHHHHHHHHHHHHTTCCCCEE-EESS----------HHHHHHHHHCTTSSSGGGTTCBEEEEE-CSBCSSSBHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcceEE-EeCC----------HHHHHHHHhccccccccccCCCCEEEE-eCCCCCCcHHHHHHHH
Confidence 345788888898888732111 1111 223344443 457898887 654 34567888888
Q ss_pred HHcCCCCCCeEEEEe
Q 003821 161 KEMGLVGPDSVWVIA 175 (793)
Q Consensus 161 ~~~g~~~~~~~wi~~ 175 (793)
++......-.+.+++
T Consensus 82 r~~~~~~~~pii~~t 96 (152)
T 3heb_A 82 KENPHTRRSPVVILT 96 (152)
T ss_dssp HHSTTTTTSCEEEEE
T ss_pred HhcccccCCCEEEEe
Confidence 874332222244445
No 361
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=20.13 E-value=1.6e+02 Score=28.34 Aligned_cols=66 Identities=12% Similarity=0.008 Sum_probs=41.5
Q ss_pred HhhcCceEEEEEEEcC--CCccccccHHHHHHHHHhcCce-eeEEeecCCCCCCCCChHHHHHHHHHhhcCCceEEEE
Q 003821 71 VGSYNWRKVIIIYEDD--ATNADTGNLALLSEALQISNSE-IEYRLVLPPISYLTDPKQFLQEKLLKLLRTESRVFII 145 (793)
Q Consensus 71 l~~~~w~~vaii~~dd--~~G~~~~~~~~l~~~l~~~g~~-v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivv 145 (793)
++.-+-+.|+++..+. .|. ......+++.+++.|.. +... .... ....-...+..+.+.+.|.+|+
T Consensus 5 L~~~~~~~Igvi~~~~~~~~~--~~~~~gi~~~a~~~g~~~~~~~---~~~~----~~~~~~~~~~~l~~~~vdgiIi 73 (277)
T 3hs3_A 5 LYQKKSKMIGIIIPDLNNRFY--AQIIDGIQEVIQKEGYTALISF---STNS----DVKKYQNAIINFENNNVDGIIT 73 (277)
T ss_dssp ---CCCCEEEEEESCTTSHHH--HHHHHHHHHHHHHTTCEEEEEE---CSSC----CHHHHHHHHHHHHHTTCSEEEE
T ss_pred hhcCCCCEEEEEeCCCCChhH--HHHHHHHHHHHHHCCCCEEEEE---eCCC----ChHHHHHHHHHHHhCCCCEEEE
Confidence 4444456788888763 354 77788888999999987 5432 1111 1233455667777788888887
No 362
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=20.06 E-value=1.8e+02 Score=26.06 Aligned_cols=61 Identities=11% Similarity=0.067 Sum_probs=33.9
Q ss_pred EEEEEEEcCC--Cc-cccccHHHHHHHHHhcCceeeEEeecCCCCCCCCChHHHHHHHHHhhcCCceEEEE
Q 003821 78 KVIIIYEDDA--TN-ADTGNLALLSEALQISNSEIEYRLVLPPISYLTDPKQFLQEKLLKLLRTESRVFII 145 (793)
Q Consensus 78 ~vaii~~dd~--~G-~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivv 145 (793)
+++||...|+ .| -.......+.+.+++.|+++.....++... +.+.+.+.+..+ .+|+||.
T Consensus 5 ~v~IistGdEll~G~i~DtN~~~l~~~L~~~G~~v~~~~iv~Dd~------~~I~~~l~~a~~-~~DlVit 68 (172)
T 3kbq_A 5 NASVITVGNEILKGRTVNTNAAFIGNFLTYHGYQVRRGFVVMDDL------DEIGWAFRVALE-VSDLVVS 68 (172)
T ss_dssp EEEEEEECHHHHTTSSCCHHHHHHHHHHHHTTCEEEEEEEECSCH------HHHHHHHHHHHH-HCSEEEE
T ss_pred EEEEEEEcccccCCcEEeHHHHHHHHHHHHCCCEEEEEEEeCCCH------HHHHHHHHHHHh-cCCEEEE
Confidence 5677766553 12 002345667777777777766555554322 556666655543 2676665
No 363
>2gzm_A Glutamate racemase; enzyme, isomerase; HET: DGL; 1.99A {Bacillus anthracis}
Probab=20.06 E-value=2.9e+02 Score=26.71 Aligned_cols=32 Identities=16% Similarity=0.335 Sum_probs=23.3
Q ss_pred ccceEEEEcCCChhhHHHHHHhccCCCccEEe
Q 003821 4 EKEVKVIVGMETWGAATMVADIGSRAQVPVLS 35 (793)
Q Consensus 4 ~~~V~aiiGp~~s~~~~~va~i~~~~~iP~Is 35 (793)
+.|+.+|+-+-++..+.++..+-+..++|+|.
T Consensus 63 ~~g~d~iviaCNTas~~~l~~lr~~~~iPvig 94 (267)
T 2gzm_A 63 DLNIKMLVIACNTATAVVLEEMQKQLPIPVVG 94 (267)
T ss_dssp TTTCSEEEECCHHHHHHHHHHHHHHCSSCEEE
T ss_pred HCCCCEEEEeCchhhHHHHHHHHHhCCCCEEe
Confidence 46788888766666655666777777888886
Done!