Query 003822
Match_columns 793
No_of_seqs 732 out of 4869
Neff 7.6
Searched_HMMs 46136
Date Thu Mar 28 12:40:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003822.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003822hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0271 Notchless-like WD40 re 100.0 3.1E-38 6.6E-43 327.1 27.7 287 442-781 111-480 (480)
2 KOG0272 U4/U6 small nuclear ri 100.0 2.3E-37 5E-42 324.8 24.7 280 456-781 178-459 (459)
3 KOG0286 G-protein beta subunit 100.0 1.6E-32 3.4E-37 276.9 34.5 292 442-780 51-343 (343)
4 KOG0272 U4/U6 small nuclear ri 100.0 1.3E-33 2.7E-38 296.7 19.0 237 455-712 219-458 (459)
5 KOG0285 Pleiotropic regulator 100.0 1.2E-31 2.6E-36 276.2 27.7 299 443-790 148-447 (460)
6 KOG0279 G protein beta subunit 100.0 1E-30 2.2E-35 262.6 32.6 296 442-782 11-313 (315)
7 KOG0284 Polyadenylation factor 100.0 1.2E-32 2.6E-37 288.0 19.1 283 455-784 98-382 (464)
8 KOG0295 WD40 repeat-containing 100.0 2.7E-31 5.8E-36 274.8 25.8 282 452-780 107-404 (406)
9 KOG0282 mRNA splicing factor [ 100.0 1.6E-32 3.5E-37 292.7 17.2 292 439-780 207-503 (503)
10 KOG0266 WD40 repeat-containing 100.0 2.4E-30 5.2E-35 295.5 32.3 288 455-783 161-455 (456)
11 KOG0268 Sof1-like rRNA process 100.0 5.1E-32 1.1E-36 279.7 14.3 325 401-784 22-347 (433)
12 KOG0271 Notchless-like WD40 re 100.0 5.6E-31 1.2E-35 273.3 21.1 244 441-712 152-479 (480)
13 KOG0273 Beta-transducin family 100.0 1.9E-29 4.1E-34 268.2 30.1 274 456-781 238-522 (524)
14 KOG0315 G-protein beta subunit 100.0 2.1E-29 4.5E-34 249.3 26.6 252 456-728 43-300 (311)
15 cd00200 WD40 WD40 domain, foun 100.0 4.3E-28 9.4E-33 252.3 38.2 277 456-780 12-289 (289)
16 KOG0293 WD40 repeat-containing 100.0 6.8E-30 1.5E-34 267.4 23.9 287 456-785 227-516 (519)
17 KOG0315 G-protein beta subunit 100.0 8.8E-29 1.9E-33 244.9 30.0 278 466-785 10-291 (311)
18 KOG0265 U5 snRNP-specific prot 100.0 5.6E-29 1.2E-33 252.3 27.4 277 456-778 50-334 (338)
19 KOG0263 Transcription initiati 100.0 6.7E-30 1.4E-34 287.0 22.8 243 456-719 381-654 (707)
20 KOG0645 WD40 repeat protein [G 100.0 2.9E-28 6.3E-33 244.0 32.0 288 455-782 16-311 (312)
21 KOG0279 G protein beta subunit 100.0 4.9E-29 1.1E-33 250.5 26.4 240 456-714 66-313 (315)
22 KOG0291 WD40-repeat-containing 100.0 7.8E-28 1.7E-32 267.4 34.1 257 454-727 351-625 (893)
23 PLN00181 protein SPA1-RELATED; 100.0 2.3E-27 4.9E-32 289.4 40.9 292 455-781 485-792 (793)
24 KOG0313 Microtubule binding pr 100.0 5.7E-28 1.2E-32 251.4 29.8 335 373-783 57-419 (423)
25 KOG0286 G-protein beta subunit 100.0 4.3E-28 9.4E-33 244.9 26.7 236 456-712 100-343 (343)
26 KOG0276 Vesicle coat complex C 100.0 3.2E-28 7E-33 265.5 25.8 244 455-720 15-263 (794)
27 KOG0318 WD40 repeat stress pro 100.0 6.8E-27 1.5E-31 251.5 34.1 294 456-782 193-602 (603)
28 KOG0296 Angio-associated migra 100.0 4.1E-27 8.9E-32 244.1 30.6 279 456-782 67-398 (399)
29 KOG0273 Beta-transducin family 100.0 1.9E-27 4.1E-32 253.0 27.6 284 456-785 181-485 (524)
30 KOG0263 Transcription initiati 100.0 7E-28 1.5E-32 270.8 24.4 252 498-785 378-652 (707)
31 KOG0275 Conserved WD40 repeat- 100.0 1.7E-28 3.7E-33 249.6 17.6 285 456-781 216-508 (508)
32 KOG0291 WD40-repeat-containing 100.0 2.9E-26 6.2E-31 255.1 35.2 306 435-782 134-508 (893)
33 KOG1446 Histone H3 (Lys4) meth 100.0 1.8E-25 4E-30 229.0 35.0 286 456-787 17-308 (311)
34 KOG1407 WD40 repeat protein [F 100.0 2.6E-26 5.7E-31 228.9 27.4 280 456-782 23-311 (313)
35 KOG0277 Peroxisomal targeting 100.0 8.6E-27 1.9E-31 231.5 23.5 286 457-781 12-308 (311)
36 KOG0281 Beta-TrCP (transducin 100.0 3.9E-28 8.5E-33 249.1 14.3 276 456-784 200-479 (499)
37 KOG0319 WD40-repeat-containing 100.0 1.3E-26 2.8E-31 257.9 27.3 283 456-781 326-618 (775)
38 KOG0292 Vesicle coat complex C 100.0 1.1E-26 2.4E-31 261.2 26.6 283 454-782 10-321 (1202)
39 KOG0278 Serine/threonine kinas 99.9 6.5E-27 1.4E-31 231.5 18.3 283 456-787 17-302 (334)
40 KOG0284 Polyadenylation factor 99.9 1.7E-27 3.8E-32 249.5 14.3 238 455-713 140-379 (464)
41 KOG0274 Cdc4 and related F-box 99.9 1.9E-25 4.2E-30 255.9 31.5 273 456-786 211-486 (537)
42 KOG0316 Conserved WD40 repeat- 99.9 9.7E-26 2.1E-30 221.7 24.7 278 455-782 19-299 (307)
43 KOG0318 WD40 repeat stress pro 99.9 1.2E-24 2.6E-29 234.3 33.6 294 454-785 148-563 (603)
44 KOG0319 WD40-repeat-containing 99.9 3.3E-26 7.2E-31 254.7 22.2 258 442-716 361-621 (775)
45 KOG0640 mRNA cleavage stimulat 99.9 1.3E-25 2.9E-30 227.9 22.7 289 455-782 114-426 (430)
46 PLN00181 protein SPA1-RELATED; 99.9 1.5E-24 3.2E-29 264.7 35.6 242 455-713 534-792 (793)
47 KOG0643 Translation initiation 99.9 1.2E-24 2.7E-29 217.5 27.4 294 455-784 12-319 (327)
48 KOG0285 Pleiotropic regulator 99.9 1.4E-25 3.1E-30 231.5 20.8 241 496-784 149-391 (460)
49 KOG0276 Vesicle coat complex C 99.9 4.4E-25 9.6E-30 241.1 23.9 246 496-785 11-260 (794)
50 KOG0266 WD40 repeat-containing 99.9 1.5E-24 3.3E-29 247.9 28.5 242 454-714 204-454 (456)
51 KOG0265 U5 snRNP-specific prot 99.9 9.4E-25 2E-29 221.7 23.1 253 494-785 43-299 (338)
52 KOG0645 WD40 repeat protein [G 99.9 3.5E-24 7.6E-29 214.9 25.9 245 452-714 60-311 (312)
53 PTZ00421 coronin; Provisional 99.9 1.7E-23 3.8E-28 239.3 34.9 250 459-720 26-296 (493)
54 KOG0295 WD40 repeat-containing 99.9 6.5E-25 1.4E-29 227.6 20.4 236 456-713 153-405 (406)
55 KOG0316 Conserved WD40 repeat- 99.9 2.5E-24 5.4E-29 211.8 22.7 244 496-785 15-260 (307)
56 cd00200 WD40 WD40 domain, foun 99.9 2.3E-23 5.1E-28 216.6 31.5 235 456-712 54-289 (289)
57 KOG0310 Conserved WD40 repeat- 99.9 7.7E-24 1.7E-28 227.1 27.9 283 456-785 29-312 (487)
58 KOG0283 WD40 repeat-containing 99.9 1.6E-24 3.4E-29 245.9 23.4 242 454-716 268-578 (712)
59 PTZ00420 coronin; Provisional 99.9 7.6E-23 1.6E-27 235.4 37.6 235 472-717 50-296 (568)
60 KOG0772 Uncharacterized conser 99.9 3.1E-24 6.8E-29 230.3 24.0 313 434-787 155-492 (641)
61 KOG0641 WD40 repeat protein [G 99.9 7.4E-23 1.6E-27 199.9 30.9 292 455-782 34-349 (350)
62 KOG0283 WD40 repeat-containing 99.9 1.6E-23 3.5E-28 237.7 26.7 259 496-785 265-579 (712)
63 KOG0305 Anaphase promoting com 99.9 4.9E-23 1.1E-27 228.6 29.8 280 454-784 178-463 (484)
64 KOG0288 WD40 repeat protein Ti 99.9 2.6E-24 5.7E-29 226.1 18.3 279 456-780 178-459 (459)
65 KOG0281 Beta-TrCP (transducin 99.9 5.4E-25 1.2E-29 226.1 12.2 235 498-787 197-433 (499)
66 KOG0289 mRNA splicing factor [ 99.9 7.6E-23 1.6E-27 216.1 27.7 280 456-781 222-505 (506)
67 KOG0305 Anaphase promoting com 99.9 2.4E-23 5.2E-28 231.2 24.8 242 455-717 219-464 (484)
68 KOG0973 Histone transcription 99.9 4.8E-23 1E-27 239.0 28.2 296 455-785 15-358 (942)
69 KOG0277 Peroxisomal targeting 99.9 8.5E-24 1.8E-28 210.3 17.6 239 456-713 63-308 (311)
70 KOG0306 WD40-repeat-containing 99.9 9.6E-23 2.1E-27 227.1 27.9 288 437-783 364-665 (888)
71 KOG0274 Cdc4 and related F-box 99.9 8.5E-23 1.8E-27 234.2 27.2 236 456-720 252-488 (537)
72 PTZ00421 coronin; Provisional 99.9 4.1E-22 9E-27 228.0 32.3 241 456-716 78-333 (493)
73 KOG0292 Vesicle coat complex C 99.9 3.4E-22 7.4E-27 225.4 30.3 243 456-718 54-325 (1202)
74 KOG0264 Nucleosome remodeling 99.9 5.1E-23 1.1E-27 219.5 21.6 254 456-714 127-404 (422)
75 KOG4283 Transcription-coupled 99.9 4.7E-22 1E-26 201.1 26.3 289 456-784 46-367 (397)
76 PTZ00420 coronin; Provisional 99.9 2.3E-21 4.9E-26 223.3 32.9 224 456-695 77-319 (568)
77 KOG0264 Nucleosome remodeling 99.9 3.3E-22 7E-27 213.4 23.4 272 496-784 122-406 (422)
78 KOG0288 WD40 repeat protein Ti 99.9 6.2E-23 1.3E-27 215.8 17.7 234 456-711 222-458 (459)
79 KOG0310 Conserved WD40 repeat- 99.9 2.5E-22 5.4E-27 215.5 21.8 239 456-716 71-311 (487)
80 KOG0282 mRNA splicing factor [ 99.9 6.2E-23 1.3E-27 219.7 16.9 240 455-712 260-503 (503)
81 KOG0301 Phospholipase A2-activ 99.9 1.3E-21 2.7E-26 217.1 27.2 274 456-786 17-292 (745)
82 KOG0293 WD40 repeat-containing 99.9 2.2E-22 4.8E-27 211.3 20.0 246 442-715 265-514 (519)
83 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 2.5E-20 5.5E-25 199.0 36.0 273 467-785 2-282 (300)
84 KOG0278 Serine/threonine kinas 99.9 7.7E-23 1.7E-27 202.8 15.0 242 455-719 61-302 (334)
85 KOG0313 Microtubule binding pr 99.9 9E-22 2E-26 205.3 23.4 247 456-713 147-417 (423)
86 KOG0308 Conserved WD40 repeat- 99.9 1.8E-22 4E-27 222.1 18.8 285 458-785 29-330 (735)
87 KOG0296 Angio-associated migra 99.9 4.8E-21 1E-25 199.2 28.2 238 456-714 109-398 (399)
88 KOG0306 WD40-repeat-containing 99.9 7.6E-22 1.7E-26 220.0 23.6 250 455-717 414-667 (888)
89 KOG0294 WD40 repeat-containing 99.9 4.4E-21 9.5E-26 196.2 27.0 267 469-785 4-284 (362)
90 KOG4328 WD40 protein [Function 99.9 1.9E-21 4.1E-26 207.1 24.2 297 452-783 185-496 (498)
91 KOG0647 mRNA export protein (c 99.9 4.5E-21 9.8E-26 195.1 25.8 263 456-758 30-304 (347)
92 KOG0300 WD40 repeat-containing 99.9 2.5E-21 5.4E-26 197.2 23.3 300 442-783 144-477 (481)
93 KOG1408 WD40 repeat protein [F 99.9 5.7E-21 1.2E-25 211.1 26.4 296 457-783 328-714 (1080)
94 KOG0647 mRNA export protein (c 99.9 4.6E-21 9.9E-26 195.1 23.6 262 496-788 25-287 (347)
95 KOG1036 Mitotic spindle checkp 99.9 2.9E-20 6.2E-25 190.1 28.6 259 456-758 16-285 (323)
96 KOG0299 U3 snoRNP-associated p 99.9 9.6E-21 2.1E-25 202.0 25.8 274 454-764 143-442 (479)
97 KOG1446 Histone H3 (Lys4) meth 99.9 9.6E-20 2.1E-24 187.2 30.9 248 497-784 13-264 (311)
98 KOG0289 mRNA splicing factor [ 99.9 1.2E-20 2.7E-25 199.5 24.8 241 455-713 263-505 (506)
99 KOG0772 Uncharacterized conser 99.9 4E-21 8.6E-26 206.6 20.5 246 456-712 217-485 (641)
100 KOG0269 WD40 repeat-containing 99.9 6.8E-22 1.5E-26 221.3 15.1 243 456-715 90-341 (839)
101 KOG1407 WD40 repeat protein [F 99.9 3.6E-20 7.8E-25 185.2 25.2 226 456-704 67-293 (313)
102 KOG1274 WD40 repeat protein [G 99.9 6.9E-20 1.5E-24 208.9 29.7 240 456-715 16-263 (933)
103 KOG1332 Vesicle coat complex C 99.9 1.1E-20 2.4E-25 187.3 20.3 240 465-713 22-285 (299)
104 KOG1273 WD40 repeat protein [G 99.9 2.8E-20 6E-25 190.0 23.0 286 456-785 26-325 (405)
105 KOG0269 WD40 repeat-containing 99.9 5.6E-21 1.2E-25 214.1 19.6 286 456-780 42-338 (839)
106 KOG0640 mRNA cleavage stimulat 99.9 5.8E-21 1.2E-25 194.3 16.5 245 456-713 175-425 (430)
107 KOG0275 Conserved WD40 repeat- 99.9 3.2E-21 6.9E-26 196.8 14.3 240 455-712 265-507 (508)
108 KOG0299 U3 snoRNP-associated p 99.9 5.6E-20 1.2E-24 196.2 23.9 265 496-786 140-414 (479)
109 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 7.5E-19 1.6E-23 187.7 32.9 241 456-720 33-285 (300)
110 KOG0639 Transducin-like enhanc 99.9 2.9E-20 6.2E-25 199.1 21.2 279 456-781 422-703 (705)
111 KOG0321 WD40 repeat-containing 99.9 4E-20 8.6E-25 203.5 22.6 288 459-783 55-392 (720)
112 KOG2055 WD40 repeat protein [G 99.9 7.3E-20 1.6E-24 195.2 23.8 285 456-782 216-512 (514)
113 KOG2106 Uncharacterized conser 99.9 4.7E-19 1E-23 190.4 29.5 313 455-793 248-594 (626)
114 KOG0294 WD40 repeat-containing 99.8 1.9E-19 4.1E-24 184.3 23.7 236 455-716 45-283 (362)
115 KOG1036 Mitotic spindle checkp 99.8 4.1E-19 8.9E-24 181.7 24.6 251 498-785 13-265 (323)
116 KOG0643 Translation initiation 99.8 5E-19 1.1E-23 177.6 24.5 226 494-758 6-242 (327)
117 KOG2096 WD40 repeat protein [G 99.8 7.8E-19 1.7E-23 179.6 26.0 292 456-780 89-400 (420)
118 KOG1539 WD repeat protein [Gen 99.8 3.5E-18 7.5E-23 193.1 33.3 307 456-785 162-609 (910)
119 KOG0301 Phospholipase A2-activ 99.8 2.4E-19 5.1E-24 199.2 23.2 227 456-714 61-288 (745)
120 KOG0650 WD40 repeat nucleolar 99.8 8.1E-19 1.8E-23 191.8 25.8 311 435-780 389-733 (733)
121 KOG2048 WD40 repeat protein [G 99.8 4.9E-18 1.1E-22 188.6 31.3 280 456-779 28-316 (691)
122 KOG0267 Microtubule severing p 99.8 1.3E-20 2.8E-25 209.7 10.6 246 466-759 4-250 (825)
123 KOG1539 WD repeat protein [Gen 99.8 3.6E-18 7.7E-23 193.0 29.0 290 455-781 246-647 (910)
124 KOG2445 Nuclear pore complex c 99.8 8.7E-18 1.9E-22 171.6 27.3 255 456-715 16-319 (361)
125 KOG0973 Histone transcription 99.8 1.4E-18 3E-23 202.2 24.4 243 455-717 71-358 (942)
126 KOG2055 WD40 repeat protein [G 99.8 3.9E-18 8.4E-23 182.1 24.0 270 419-714 232-512 (514)
127 KOG0308 Conserved WD40 repeat- 99.8 1.1E-18 2.3E-23 192.7 20.2 248 456-715 76-328 (735)
128 KOG0268 Sof1-like rRNA process 99.8 2.3E-19 5E-24 186.4 12.5 254 456-738 112-367 (433)
129 KOG0321 WD40 repeat-containing 99.8 2.6E-18 5.6E-23 189.3 21.0 257 456-718 103-395 (720)
130 KOG1188 WD40 repeat protein [G 99.8 4.2E-18 9.1E-23 176.2 20.2 284 467-781 41-345 (376)
131 KOG0270 WD40 repeat-containing 99.8 2.1E-18 4.6E-23 183.6 18.2 250 456-720 176-455 (463)
132 KOG4227 WD40 repeat protein [G 99.8 8.4E-18 1.8E-22 175.5 22.1 303 456-781 59-386 (609)
133 KOG0646 WD40 repeat protein [G 99.8 8.1E-18 1.7E-22 180.2 22.1 284 470-785 11-310 (476)
134 KOG0641 WD40 repeat protein [G 99.8 1.1E-16 2.4E-21 156.9 28.0 242 455-713 91-348 (350)
135 KOG1332 Vesicle coat complex C 99.8 3.1E-18 6.8E-23 170.0 16.9 252 496-784 9-288 (299)
136 KOG2048 WD40 repeat protein [G 99.8 4.5E-17 9.7E-22 181.0 27.3 247 498-784 25-277 (691)
137 KOG1408 WD40 repeat protein [F 99.8 5.1E-18 1.1E-22 188.0 19.2 246 453-715 459-714 (1080)
138 KOG0639 Transducin-like enhanc 99.8 2.5E-18 5.4E-23 184.4 15.9 237 454-713 466-703 (705)
139 KOG0646 WD40 repeat protein [G 99.8 8.1E-18 1.8E-22 180.1 19.6 228 456-694 84-331 (476)
140 KOG0300 WD40 repeat-containing 99.8 7E-18 1.5E-22 172.2 18.1 247 455-717 192-479 (481)
141 KOG0302 Ribosome Assembly prot 99.8 1.7E-17 3.6E-22 173.4 21.0 235 465-712 164-436 (440)
142 KOG2106 Uncharacterized conser 99.8 5.9E-16 1.3E-20 166.7 32.8 276 456-780 203-519 (626)
143 KOG2445 Nuclear pore complex c 99.8 1.1E-16 2.3E-21 163.7 25.6 272 496-783 11-319 (361)
144 KOG0307 Vesicle coat complex C 99.8 1.9E-18 4E-23 201.8 13.9 249 456-717 67-330 (1049)
145 KOG0302 Ribosome Assembly prot 99.8 3.2E-17 6.8E-22 171.4 21.5 271 495-780 148-436 (440)
146 KOG2919 Guanine nucleotide-bin 99.8 7E-17 1.5E-21 165.9 23.5 285 456-783 52-368 (406)
147 KOG1063 RNA polymerase II elon 99.8 9.6E-17 2.1E-21 178.5 26.3 312 434-784 179-650 (764)
148 KOG4283 Transcription-coupled 99.8 3.8E-17 8.3E-22 165.8 21.0 217 496-718 41-280 (397)
149 KOG0267 Microtubule severing p 99.8 9.4E-19 2E-23 195.0 10.1 228 456-704 31-259 (825)
150 KOG0270 WD40 repeat-containing 99.8 1.1E-17 2.5E-22 178.0 17.4 206 455-672 245-454 (463)
151 KOG1063 RNA polymerase II elon 99.8 2E-16 4.3E-21 176.1 27.7 301 443-782 264-699 (764)
152 KOG0307 Vesicle coat complex C 99.8 3.5E-18 7.6E-23 199.6 14.4 291 456-785 9-330 (1049)
153 KOG1007 WD repeat protein TSSC 99.7 1.3E-16 2.9E-21 161.6 20.1 250 456-713 66-360 (370)
154 KOG4378 Nuclear protein COP1 [ 99.7 6.5E-17 1.4E-21 173.5 18.8 262 456-758 37-304 (673)
155 KOG1517 Guanine nucleotide bin 99.7 6.1E-16 1.3E-20 178.2 27.1 306 456-786 1067-1385(1387)
156 KOG1274 WD40 repeat protein [G 99.7 9.8E-16 2.1E-20 175.4 26.7 246 496-783 11-263 (933)
157 KOG0303 Actin-binding protein 99.7 4.9E-16 1.1E-20 163.3 21.9 253 456-717 30-297 (472)
158 COG2319 FOG: WD40 repeat [Gene 99.7 4.3E-14 9.4E-19 154.0 38.2 286 456-785 68-362 (466)
159 KOG0290 Conserved WD40 repeat- 99.7 8.6E-16 1.9E-20 156.0 22.1 285 456-764 47-352 (364)
160 KOG0649 WD40 repeat protein [G 99.7 4.1E-15 9E-20 147.7 26.0 238 456-713 13-273 (325)
161 KOG1034 Transcriptional repres 99.7 1.2E-16 2.6E-21 164.6 14.7 246 456-714 92-383 (385)
162 KOG1538 Uncharacterized conser 99.7 9.5E-16 2.1E-20 169.0 22.5 271 456-781 15-292 (1081)
163 KOG4378 Nuclear protein COP1 [ 99.7 5.7E-16 1.2E-20 166.3 19.8 272 475-787 11-285 (673)
164 KOG0303 Actin-binding protein 99.7 2.1E-15 4.6E-20 158.5 22.1 228 454-695 82-322 (472)
165 KOG1240 Protein kinase contain 99.7 7.2E-15 1.6E-19 172.1 27.0 315 456-780 1051-1431(1431)
166 PRK11028 6-phosphogluconolacto 99.7 6.1E-14 1.3E-18 154.0 32.8 277 469-783 5-305 (330)
167 KOG1587 Cytoplasmic dynein int 99.7 3.6E-15 7.8E-20 170.5 23.6 255 455-716 244-518 (555)
168 KOG4328 WD40 protein [Function 99.7 2.6E-15 5.7E-20 160.5 19.5 245 455-714 236-495 (498)
169 COG2319 FOG: WD40 repeat [Gene 99.7 4.4E-13 9.6E-18 146.1 37.8 283 456-785 112-403 (466)
170 KOG2096 WD40 repeat protein [G 99.7 3.8E-15 8.3E-20 152.8 19.8 210 548-783 84-309 (420)
171 KOG1007 WD repeat protein TSSC 99.7 1.9E-14 4.1E-19 146.2 22.9 305 467-783 27-362 (370)
172 KOG1273 WD40 repeat protein [G 99.7 9.4E-15 2E-19 149.8 20.6 198 501-714 26-226 (405)
173 KOG0642 Cell-cycle nuclear pro 99.6 2.1E-15 4.5E-20 165.1 16.5 257 456-720 297-567 (577)
174 KOG0650 WD40 repeat nucleolar 99.6 4.7E-15 1E-19 162.7 19.2 243 494-781 396-679 (733)
175 KOG2919 Guanine nucleotide-bin 99.6 5.4E-15 1.2E-19 152.1 17.8 235 465-715 122-368 (406)
176 KOG1445 Tumor-specific antigen 99.6 3.7E-15 7.9E-20 163.7 15.9 249 461-718 587-848 (1012)
177 KOG1009 Chromatin assembly com 99.6 6.9E-14 1.5E-18 148.0 24.2 293 456-781 16-371 (434)
178 KOG1334 WD40 repeat protein [G 99.6 5.1E-15 1.1E-19 159.4 15.4 295 456-786 145-470 (559)
179 PRK11028 6-phosphogluconolacto 99.6 5.1E-13 1.1E-17 146.7 31.6 248 456-718 37-310 (330)
180 KOG1034 Transcriptional repres 99.6 7.8E-13 1.7E-17 136.7 27.7 286 456-781 41-382 (385)
181 KOG0290 Conserved WD40 repeat- 99.6 4.6E-14 1E-18 143.5 17.7 199 452-663 149-361 (364)
182 PRK01742 tolB translocation pr 99.6 1.6E-13 3.4E-18 156.3 24.0 225 475-728 183-415 (429)
183 KOG1240 Protein kinase contain 99.6 3.3E-13 7.2E-18 158.4 26.7 290 481-787 1034-1339(1431)
184 KOG1587 Cytoplasmic dynein int 99.6 6.1E-13 1.3E-17 152.3 28.2 276 475-784 221-518 (555)
185 KOG1523 Actin-related protein 99.6 3.3E-13 7.2E-18 139.2 22.6 233 456-704 13-269 (361)
186 KOG1963 WD40 repeat protein [G 99.6 1.9E-12 4.2E-17 148.6 28.8 303 451-784 203-540 (792)
187 KOG0642 Cell-cycle nuclear pro 99.5 6.1E-14 1.3E-18 153.7 15.7 259 494-786 290-565 (577)
188 KOG2139 WD40 repeat protein [G 99.5 1.7E-12 3.6E-17 135.7 24.0 254 456-719 101-388 (445)
189 KOG2110 Uncharacterized conser 99.5 3.4E-12 7.4E-17 134.1 25.5 236 456-717 8-251 (391)
190 KOG2110 Uncharacterized conser 99.5 2.9E-11 6.4E-16 127.1 31.2 193 456-668 49-249 (391)
191 KOG1538 Uncharacterized conser 99.5 6.5E-13 1.4E-17 146.9 19.6 232 456-714 56-293 (1081)
192 KOG1188 WD40 repeat protein [G 99.5 5.2E-13 1.1E-17 138.8 17.1 197 563-785 41-245 (376)
193 KOG3881 Uncharacterized conser 99.5 1.6E-12 3.4E-17 137.4 20.7 258 455-727 57-333 (412)
194 KOG0644 Uncharacterized conser 99.5 7.8E-14 1.7E-18 157.8 11.4 243 455-728 192-439 (1113)
195 KOG1517 Guanine nucleotide bin 99.5 1.9E-12 4E-17 150.0 22.5 248 455-716 1111-1383(1387)
196 KOG1963 WD40 repeat protein [G 99.5 1E-11 2.3E-16 142.6 28.4 259 460-728 23-389 (792)
197 KOG4227 WD40 repeat protein [G 99.5 1.5E-12 3.3E-17 136.6 19.4 263 495-785 53-325 (609)
198 KOG0322 G-protein beta subunit 99.5 4.7E-13 1E-17 134.8 13.7 246 456-713 17-322 (323)
199 KOG1272 WD40-repeat-containing 99.5 2.6E-13 5.7E-18 145.5 12.5 229 455-712 131-360 (545)
200 KOG1445 Tumor-specific antigen 99.5 8.1E-13 1.7E-17 145.5 15.8 214 495-718 76-297 (1012)
201 KOG0771 Prolactin regulatory e 99.4 8.2E-12 1.8E-16 133.4 21.8 200 554-783 148-355 (398)
202 KOG0322 G-protein beta subunit 99.4 2.2E-12 4.9E-17 129.9 16.5 244 496-781 12-322 (323)
203 KOG1310 WD40 repeat protein [G 99.4 1.4E-12 3.1E-17 142.0 15.8 214 456-671 53-307 (758)
204 KOG2321 WD40 repeat protein [G 99.4 1.4E-11 3.1E-16 135.2 23.3 279 456-782 54-343 (703)
205 KOG0644 Uncharacterized conser 99.4 1.9E-13 4.1E-18 154.8 8.6 239 495-785 187-429 (1113)
206 KOG1009 Chromatin assembly com 99.4 1.1E-11 2.4E-16 131.5 21.4 246 455-718 67-376 (434)
207 KOG1524 WD40 repeat-containing 99.4 2.3E-12 5.1E-17 140.0 16.3 210 465-711 74-284 (737)
208 KOG0649 WD40 repeat protein [G 99.4 3.5E-11 7.5E-16 120.1 22.9 219 500-728 12-249 (325)
209 PRK03629 tolB translocation pr 99.4 1E-10 2.2E-15 133.3 28.7 224 476-727 179-416 (429)
210 KOG0771 Prolactin regulatory e 99.4 6.1E-12 1.3E-16 134.3 15.4 197 457-668 148-355 (398)
211 KOG1354 Serine/threonine prote 99.4 3.7E-11 7.9E-16 125.1 19.0 256 456-719 28-364 (433)
212 PRK01742 tolB translocation pr 99.4 4.6E-11 1E-15 136.1 21.5 211 456-693 206-426 (429)
213 KOG4497 Uncharacterized conser 99.3 3.2E-11 7E-16 124.7 17.6 274 456-783 51-392 (447)
214 KOG2139 WD40 repeat protein [G 99.3 9.9E-11 2.2E-15 122.6 20.9 192 499-707 99-305 (445)
215 KOG2111 Uncharacterized conser 99.3 5E-10 1.1E-14 116.0 25.7 179 476-669 75-258 (346)
216 PF02239 Cytochrom_D1: Cytochr 99.3 9.7E-10 2.1E-14 122.3 30.1 279 467-783 6-303 (369)
217 PF08662 eIF2A: Eukaryotic tra 99.3 1.1E-10 2.5E-15 118.3 19.9 154 554-720 9-184 (194)
218 KOG1310 WD40 repeat protein [G 99.3 1.1E-11 2.3E-16 135.3 12.6 215 495-723 47-312 (758)
219 PRK05137 tolB translocation pr 99.3 1.5E-09 3.2E-14 124.1 29.4 218 476-718 182-416 (435)
220 PRK04922 tolB translocation pr 99.3 3.8E-10 8.2E-15 128.8 24.3 215 476-716 184-413 (433)
221 PF08662 eIF2A: Eukaryotic tra 99.3 4.2E-10 9.2E-15 114.1 21.8 158 502-676 9-187 (194)
222 KOG2111 Uncharacterized conser 99.3 2.9E-09 6.3E-14 110.4 27.6 240 456-717 8-259 (346)
223 PRK02889 tolB translocation pr 99.3 5.1E-10 1.1E-14 127.5 24.8 220 476-720 176-408 (427)
224 PRK04922 tolB translocation pr 99.3 1E-09 2.2E-14 125.3 26.8 178 521-719 184-373 (433)
225 KOG3881 Uncharacterized conser 99.3 1.7E-10 3.8E-15 122.1 18.0 203 467-675 116-328 (412)
226 PF02239 Cytochrom_D1: Cytochr 99.3 2E-09 4.3E-14 119.8 27.1 253 457-721 40-354 (369)
227 PRK03629 tolB translocation pr 99.2 1.5E-09 3.3E-14 123.7 24.9 212 456-692 201-427 (429)
228 KOG2394 WD40 protein DMR-N9 [G 99.2 1.9E-10 4.1E-15 125.8 16.4 172 560-742 183-384 (636)
229 KOG1524 WD40 repeat-containing 99.2 4.1E-10 8.8E-15 122.9 18.4 210 496-720 12-221 (737)
230 PF10282 Lactonase: Lactonase, 99.2 3E-08 6.5E-13 109.8 31.4 258 456-720 39-330 (345)
231 KOG2394 WD40 protein DMR-N9 [G 99.2 4.9E-10 1.1E-14 122.6 16.4 179 465-647 184-384 (636)
232 PRK05137 tolB translocation pr 99.2 1.2E-08 2.6E-13 116.6 28.2 176 521-717 182-369 (435)
233 PRK02889 tolB translocation pr 99.2 6.8E-09 1.5E-13 118.3 26.0 161 549-720 194-366 (427)
234 KOG1272 WD40-repeat-containing 99.2 7.9E-11 1.7E-15 126.7 9.1 198 500-720 131-329 (545)
235 PF10282 Lactonase: Lactonase, 99.2 3.3E-07 7.2E-12 101.5 38.1 283 469-783 2-323 (345)
236 KOG1523 Actin-related protein 99.2 1.5E-09 3.2E-14 112.5 17.8 216 551-784 11-238 (361)
237 TIGR02800 propeller_TolB tol-p 99.1 3E-08 6.4E-13 112.4 27.9 220 475-720 169-402 (417)
238 PRK04792 tolB translocation pr 99.1 2.5E-08 5.5E-13 114.3 27.5 220 477-720 199-430 (448)
239 KOG1064 RAVE (regulator of V-A 99.1 4.4E-10 9.6E-15 136.3 12.7 192 456-677 2211-2408(2439)
240 PRK00178 tolB translocation pr 99.1 4.7E-08 1E-12 111.5 27.2 215 477-714 180-406 (430)
241 KOG0280 Uncharacterized conser 99.1 1.2E-08 2.6E-13 104.9 19.5 230 475-717 45-287 (339)
242 PLN02919 haloacid dehalogenase 99.1 1.4E-07 2.9E-12 118.1 33.2 257 456-718 570-892 (1057)
243 TIGR02800 propeller_TolB tol-p 99.1 6.5E-08 1.4E-12 109.6 27.9 176 522-718 171-358 (417)
244 KOG4547 WD40 repeat-containing 99.0 3.5E-08 7.7E-13 109.9 22.6 210 465-715 4-221 (541)
245 PRK01029 tolB translocation pr 99.0 2.5E-07 5.3E-12 105.4 30.1 223 476-720 165-409 (428)
246 KOG2321 WD40 repeat protein [G 99.0 2.5E-08 5.4E-13 110.2 20.1 225 465-713 105-342 (703)
247 KOG4497 Uncharacterized conser 99.0 1.9E-09 4.1E-14 111.9 10.5 227 459-718 14-244 (447)
248 KOG1334 WD40 repeat protein [G 99.0 8.4E-09 1.8E-13 112.0 15.9 262 496-782 140-424 (559)
249 PF04762 IKI3: IKI3 family; I 99.0 1.1E-06 2.4E-11 108.1 35.0 305 456-784 78-458 (928)
250 PRK00178 tolB translocation pr 99.0 2.9E-07 6.3E-12 105.0 27.9 177 522-719 180-368 (430)
251 KOG0974 WD-repeat protein WDR6 98.9 2.9E-08 6.3E-13 116.5 18.7 229 466-715 61-289 (967)
252 KOG1064 RAVE (regulator of V-A 98.9 5.8E-09 1.3E-13 127.0 13.2 223 469-726 2183-2408(2439)
253 TIGR02658 TTQ_MADH_Hv methylam 98.9 1E-06 2.2E-11 96.6 29.1 242 456-720 49-336 (352)
254 TIGR03300 assembly_YfgL outer 98.9 1.8E-06 4E-11 96.6 31.7 231 465-720 104-344 (377)
255 PRK04792 tolB translocation pr 98.9 7.1E-07 1.5E-11 102.4 27.8 160 550-718 217-386 (448)
256 KOG0309 Conserved WD40 repeat- 98.9 7.9E-09 1.7E-13 116.5 11.3 246 456-715 70-340 (1081)
257 TIGR02658 TTQ_MADH_Hv methylam 98.9 8.2E-06 1.8E-10 89.6 34.5 269 476-785 27-333 (352)
258 KOG2315 Predicted translation 98.8 6.3E-07 1.4E-11 99.4 24.2 239 457-720 129-395 (566)
259 KOG2315 Predicted translation 98.8 6.8E-07 1.5E-11 99.2 24.4 273 456-784 76-392 (566)
260 KOG0974 WD-repeat protein WDR6 98.8 1E-07 2.3E-12 112.0 18.2 188 465-668 98-289 (967)
261 TIGR03300 assembly_YfgL outer 98.8 3.2E-06 6.8E-11 94.7 29.4 226 466-720 65-303 (377)
262 PRK01029 tolB translocation pr 98.8 1.2E-06 2.6E-11 99.8 26.2 218 457-694 188-426 (428)
263 COG2706 3-carboxymuconate cycl 98.8 1.1E-05 2.3E-10 86.0 31.0 259 456-719 42-328 (346)
264 COG2706 3-carboxymuconate cycl 98.8 1.3E-05 2.8E-10 85.5 30.9 229 475-715 15-275 (346)
265 PLN02919 haloacid dehalogenase 98.8 4.9E-06 1.1E-10 104.3 32.3 267 502-785 571-891 (1057)
266 KOG2041 WD40 repeat protein [G 98.8 9.2E-07 2E-11 99.8 22.8 246 456-720 17-302 (1189)
267 KOG0280 Uncharacterized conser 98.8 1.5E-07 3.3E-12 96.8 15.1 202 456-669 124-335 (339)
268 KOG4190 Uncharacterized conser 98.7 7.7E-08 1.7E-12 105.3 12.8 282 456-778 738-1032(1034)
269 KOG4190 Uncharacterized conser 98.7 3.1E-08 6.7E-13 108.4 9.4 215 494-720 731-954 (1034)
270 KOG4547 WD40 repeat-containing 98.7 6.5E-07 1.4E-11 100.0 19.9 161 560-729 3-185 (541)
271 COG5170 CDC55 Serine/threonine 98.7 2.5E-07 5.5E-12 95.6 15.2 251 456-714 29-367 (460)
272 KOG1409 Uncharacterized conser 98.7 4.6E-07 9.9E-12 95.1 17.1 194 456-668 71-271 (404)
273 KOG4532 WD40-like repeat conta 98.7 3.9E-06 8.4E-11 85.7 22.0 246 458-717 72-334 (344)
274 KOG1354 Serine/threonine prote 98.7 7.8E-07 1.7E-11 93.3 17.2 223 498-728 25-314 (433)
275 PF13360 PQQ_2: PQQ-like domai 98.7 1.2E-05 2.5E-10 83.6 26.3 222 474-720 1-236 (238)
276 COG4946 Uncharacterized protei 98.7 3.7E-05 8E-10 83.9 29.8 176 461-656 327-507 (668)
277 KOG0309 Conserved WD40 repeat- 98.6 2.1E-07 4.7E-12 105.2 12.7 289 456-784 27-341 (1081)
278 PF04762 IKI3: IKI3 family; I 98.6 6.9E-05 1.5E-09 92.6 34.0 281 456-778 24-375 (928)
279 KOG4532 WD40-like repeat conta 98.6 1.6E-05 3.5E-10 81.2 22.7 247 510-786 83-335 (344)
280 PF08450 SGL: SMP-30/Gluconola 98.6 0.00015 3.2E-09 76.2 31.3 227 457-701 3-244 (246)
281 PRK11138 outer membrane biogen 98.6 5.1E-05 1.1E-09 85.7 29.5 232 466-722 120-361 (394)
282 KOG3914 WD repeat protein WDR4 98.6 7.4E-07 1.6E-11 95.5 13.5 162 452-630 61-229 (390)
283 PRK04043 tolB translocation pr 98.5 4.6E-05 1E-09 86.6 28.4 214 476-715 169-401 (419)
284 PRK04043 tolB translocation pr 98.5 9.2E-05 2E-09 84.1 29.9 157 552-719 189-362 (419)
285 COG4946 Uncharacterized protei 98.5 3.6E-05 7.7E-10 84.0 24.5 212 465-700 277-505 (668)
286 KOG1409 Uncharacterized conser 98.5 6.1E-06 1.3E-10 86.9 17.9 247 495-785 21-273 (404)
287 PF14580 LRR_9: Leucine-rich r 98.5 4.5E-08 9.8E-13 97.0 2.2 100 101-204 20-119 (175)
288 PF08450 SGL: SMP-30/Gluconola 98.5 0.00019 4.1E-09 75.4 29.5 203 503-725 4-223 (246)
289 KOG2695 WD40 repeat protein [G 98.5 3.6E-07 7.9E-12 95.9 8.2 151 515-678 228-387 (425)
290 KOG2314 Translation initiation 98.5 2.8E-05 6E-10 86.4 22.4 248 456-728 252-576 (698)
291 KOG0882 Cyclophilin-related pe 98.4 2.6E-06 5.7E-11 92.2 13.6 241 465-720 19-311 (558)
292 KOG4714 Nucleoporin [Nuclear s 98.4 1.6E-06 3.4E-11 88.1 10.9 149 465-625 100-255 (319)
293 KOG1832 HIV-1 Vpr-binding prot 98.4 2E-07 4.2E-12 107.2 4.0 206 456-695 1104-1314(1516)
294 COG5354 Uncharacterized protei 98.4 0.00027 5.9E-09 78.1 27.6 242 456-719 74-353 (561)
295 PF15492 Nbas_N: Neuroblastoma 98.4 4.5E-05 9.8E-10 79.2 20.3 201 457-677 47-269 (282)
296 KOG3914 WD repeat protein WDR4 98.4 4.8E-06 1E-10 89.4 13.6 157 509-676 72-232 (390)
297 KOG1645 RING-finger-containing 98.4 1.5E-05 3.2E-10 85.6 17.0 241 456-715 196-462 (463)
298 KOG2314 Translation initiation 98.3 0.00012 2.7E-09 81.3 23.6 287 452-783 209-526 (698)
299 PRK11138 outer membrane biogen 98.3 0.00046 9.9E-09 78.0 29.2 228 466-720 69-318 (394)
300 PF13360 PQQ_2: PQQ-like domai 98.3 0.00061 1.3E-08 70.6 26.7 190 465-673 35-236 (238)
301 KOG2066 Vacuolar assembly/sort 98.2 3.3E-05 7.1E-10 89.3 17.8 181 456-668 42-234 (846)
302 KOG1912 WD40 repeat protein [G 98.2 0.00013 2.8E-09 83.9 21.6 240 457-715 19-305 (1062)
303 COG5354 Uncharacterized protei 98.2 0.0004 8.7E-09 76.9 23.4 241 454-716 33-308 (561)
304 KOG4714 Nucleoporin [Nuclear s 98.2 9.1E-06 2E-10 82.7 9.8 201 456-668 39-255 (319)
305 PF15492 Nbas_N: Neuroblastoma 98.2 0.0014 3.1E-08 68.2 26.0 237 459-720 3-265 (282)
306 KOG2695 WD40 repeat protein [G 98.1 9E-06 1.9E-10 85.6 9.5 156 564-728 226-388 (425)
307 PF07433 DUF1513: Protein of u 98.1 0.0014 3E-08 70.1 26.1 229 456-703 7-276 (305)
308 PF00400 WD40: WD domain, G-be 98.1 8.6E-06 1.9E-10 59.5 6.3 39 582-622 1-39 (39)
309 KOG1645 RING-finger-containing 98.1 0.00022 4.7E-09 76.9 18.8 226 478-720 175-425 (463)
310 KOG1275 PAB-dependent poly(A) 98.0 8.7E-05 1.9E-09 86.7 16.0 183 465-665 146-340 (1118)
311 KOG1920 IkappaB kinase complex 98.0 0.0014 3E-08 79.4 26.2 233 456-716 71-324 (1265)
312 PF00780 CNH: CNH domain; Int 98.0 0.005 1.1E-07 65.6 28.7 239 465-728 6-267 (275)
313 PF06977 SdiA-regulated: SdiA- 98.0 0.0019 4.1E-08 67.9 24.5 204 456-664 24-247 (248)
314 KOG1275 PAB-dependent poly(A) 98.0 7.7E-05 1.7E-09 87.1 14.9 183 510-712 146-340 (1118)
315 KOG2041 WD40 repeat protein [G 98.0 0.00071 1.5E-08 77.2 21.7 237 456-714 74-337 (1189)
316 PF07433 DUF1513: Protein of u 98.0 0.0071 1.5E-07 64.8 27.6 208 501-720 7-253 (305)
317 cd00216 PQQ_DH Dehydrogenases 98.0 0.0024 5.2E-08 74.2 26.3 247 467-724 111-434 (488)
318 KOG1008 Uncharacterized conser 98.0 7.6E-06 1.6E-10 92.2 5.2 268 499-788 57-341 (783)
319 KOG3617 WD40 and TPR repeat-co 97.9 0.00017 3.8E-09 83.3 15.0 245 444-712 50-331 (1416)
320 KOG0882 Cyclophilin-related pe 97.9 5.1E-05 1.1E-09 82.5 10.1 216 496-727 7-242 (558)
321 KOG2114 Vacuolar assembly/sort 97.9 0.0023 5.1E-08 75.0 23.9 208 460-675 30-251 (933)
322 PF11768 DUF3312: Protein of u 97.9 0.00051 1.1E-08 77.8 18.1 117 500-626 207-331 (545)
323 COG5170 CDC55 Serine/threonine 97.9 0.00017 3.7E-09 75.1 12.6 222 498-727 26-321 (460)
324 KOG1912 WD40 repeat protein [G 97.9 0.00032 7E-09 80.8 15.9 229 468-716 439-743 (1062)
325 PF00400 WD40: WD domain, G-be 97.8 6.2E-05 1.3E-09 54.9 6.8 38 487-527 2-39 (39)
326 KOG1008 Uncharacterized conser 97.8 5.7E-06 1.2E-10 93.2 1.7 203 456-667 59-275 (783)
327 KOG4649 PQQ (pyrrolo-quinoline 97.8 0.047 1E-06 56.4 27.8 194 461-675 18-214 (354)
328 KOG2066 Vacuolar assembly/sort 97.8 0.00052 1.1E-08 79.7 15.5 191 551-784 40-235 (846)
329 PRK02888 nitrous-oxide reducta 97.7 0.006 1.3E-07 70.9 24.0 136 571-715 214-405 (635)
330 KOG1832 HIV-1 Vpr-binding prot 97.7 3.4E-05 7.3E-10 89.4 4.2 160 549-720 1100-1261(1516)
331 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.6 0.034 7.3E-07 65.3 28.9 251 467-725 121-501 (527)
332 cd00216 PQQ_DH Dehydrogenases 97.6 0.035 7.6E-07 64.6 28.9 241 466-724 61-384 (488)
333 PF06433 Me-amine-dh_H: Methyl 97.6 0.022 4.9E-07 61.7 24.4 246 459-727 41-331 (342)
334 KOG3617 WD40 and TPR repeat-co 97.5 0.00084 1.8E-08 77.9 12.6 195 456-675 18-227 (1416)
335 PF11768 DUF3312: Protein of u 97.5 0.065 1.4E-06 61.2 27.4 119 595-720 207-335 (545)
336 COG3391 Uncharacterized conser 97.5 0.077 1.7E-06 59.7 28.5 246 456-720 33-289 (381)
337 PF08596 Lgl_C: Lethal giant l 97.5 0.01 2.2E-07 66.7 21.1 233 455-695 3-319 (395)
338 PF14583 Pectate_lyase22: Olig 97.5 0.086 1.9E-06 58.3 27.2 285 457-780 39-379 (386)
339 PRK02888 nitrous-oxide reducta 97.4 0.0079 1.7E-07 70.0 19.2 186 461-668 200-405 (635)
340 PF04053 Coatomer_WDAD: Coatom 97.4 0.03 6.6E-07 63.9 23.3 218 455-714 34-262 (443)
341 KOG4649 PQQ (pyrrolo-quinoline 97.3 0.081 1.8E-06 54.7 23.0 68 466-536 63-130 (354)
342 PF03178 CPSF_A: CPSF A subuni 97.3 0.036 7.8E-07 60.7 22.2 217 476-707 2-259 (321)
343 KOG2114 Vacuolar assembly/sort 97.3 0.018 3.9E-07 67.8 20.1 196 558-785 31-246 (933)
344 COG0823 TolB Periplasmic compo 97.2 0.022 4.8E-07 64.7 19.8 159 552-720 194-364 (425)
345 PF04841 Vps16_N: Vps16, N-ter 97.2 0.3 6.6E-06 55.5 29.0 200 477-695 62-272 (410)
346 COG3391 Uncharacterized conser 97.2 0.12 2.5E-06 58.3 25.5 221 456-693 76-309 (381)
347 PF00930 DPPIV_N: Dipeptidyl p 97.2 0.11 2.4E-06 57.8 24.8 240 456-704 45-349 (353)
348 PF02897 Peptidase_S9_N: Proly 97.2 0.58 1.3E-05 53.0 31.1 246 456-720 126-410 (414)
349 KOG3621 WD40 repeat-containing 97.2 0.091 2E-06 61.0 23.8 198 465-675 44-253 (726)
350 PF06977 SdiA-regulated: SdiA- 97.1 0.11 2.4E-06 54.7 22.0 204 493-711 16-247 (248)
351 KOG1920 IkappaB kinase complex 97.1 0.039 8.4E-07 67.4 20.4 205 551-784 69-324 (1265)
352 PF00930 DPPIV_N: Dipeptidyl p 97.0 0.33 7.3E-06 53.9 26.3 219 475-704 22-302 (353)
353 PF03178 CPSF_A: CPSF A subuni 96.9 0.35 7.5E-06 53.0 25.5 134 572-714 62-202 (321)
354 COG3386 Gluconolactonase [Carb 96.9 0.33 7.2E-06 52.8 24.0 216 460-692 31-264 (307)
355 COG0823 TolB Periplasmic compo 96.8 0.075 1.6E-06 60.5 19.2 185 499-702 193-389 (425)
356 PF14783 BBS2_Mid: Ciliary BBS 96.8 0.069 1.5E-06 48.6 15.1 101 456-575 2-109 (111)
357 PF00780 CNH: CNH domain; Int 96.8 0.94 2E-05 48.1 27.2 150 510-675 6-173 (275)
358 KOG4441 Proteins containing BT 96.8 0.088 1.9E-06 62.3 20.2 232 465-717 284-549 (571)
359 KOG3621 WD40 repeat-containing 96.7 0.014 3.1E-07 67.4 12.5 112 556-668 39-155 (726)
360 PF14655 RAB3GAP2_N: Rab3 GTPa 96.7 1.6 3.4E-05 49.4 28.1 82 641-724 311-408 (415)
361 PF14727 PHTB1_N: PTHB1 N-term 96.7 1.7 3.7E-05 49.2 33.8 288 463-785 34-363 (418)
362 PF13855 LRR_8: Leucine rich r 96.7 0.00065 1.4E-08 55.1 0.9 57 148-207 2-58 (61)
363 PF06433 Me-amine-dh_H: Methyl 96.6 0.4 8.6E-06 52.3 22.1 207 458-677 99-330 (342)
364 PF05096 Glu_cyclase_2: Glutam 96.6 1.2 2.6E-05 47.1 24.7 196 488-701 35-249 (264)
365 TIGR03075 PQQ_enz_alc_DH PQQ-d 96.5 0.77 1.7E-05 54.0 25.6 53 648-702 471-523 (527)
366 PF08553 VID27: VID27 cytoplas 96.5 0.062 1.3E-06 64.8 16.5 160 455-623 482-646 (794)
367 smart00320 WD40 WD40 repeats. 96.5 0.0075 1.6E-07 41.4 5.6 39 582-622 2-40 (40)
368 PF07995 GSDH: Glucose / Sorbo 96.5 1.4 3.1E-05 48.6 26.0 245 456-707 4-329 (331)
369 COG3490 Uncharacterized protei 96.4 1.1 2.4E-05 47.3 22.5 210 501-720 70-316 (366)
370 COG3204 Uncharacterized protei 96.4 0.45 9.7E-06 50.5 19.9 167 456-626 88-265 (316)
371 PF05096 Glu_cyclase_2: Glutam 96.3 1.1 2.5E-05 47.2 22.6 196 553-764 47-247 (264)
372 PF08596 Lgl_C: Lethal giant l 96.2 0.49 1.1E-05 53.4 20.9 194 456-656 89-325 (395)
373 PF04053 Coatomer_WDAD: Coatom 96.2 0.31 6.7E-06 55.8 19.3 143 499-669 33-175 (443)
374 PF13855 LRR_8: Leucine rich r 96.2 0.0041 8.8E-08 50.4 3.0 55 128-183 4-60 (61)
375 PHA02713 hypothetical protein; 96.2 0.13 2.9E-06 60.8 16.8 191 465-671 303-537 (557)
376 PHA02713 hypothetical protein; 96.2 0.5 1.1E-05 56.0 21.5 219 477-717 273-536 (557)
377 PF14783 BBS2_Mid: Ciliary BBS 96.1 0.21 4.5E-06 45.5 14.0 102 501-619 2-109 (111)
378 KOG4640 Anaphase-promoting com 96.1 0.025 5.4E-07 64.7 9.5 93 551-646 21-114 (665)
379 PF02897 Peptidase_S9_N: Proly 96.1 3.5 7.6E-05 46.7 28.6 203 503-720 128-363 (414)
380 PF08553 VID27: VID27 cytoplas 96.1 0.11 2.4E-06 62.7 15.4 142 512-666 494-646 (794)
381 KOG4640 Anaphase-promoting com 96.0 0.032 7E-07 63.9 9.7 73 456-533 23-96 (665)
382 PF04841 Vps16_N: Vps16, N-ter 95.8 4.2 9.1E-05 46.3 26.4 182 456-649 83-271 (410)
383 TIGR03074 PQQ_membr_DH membran 95.8 2.5 5.4E-05 51.7 25.8 244 466-722 194-485 (764)
384 PRK13616 lipoprotein LpqB; Pro 95.8 0.95 2E-05 53.8 21.3 149 552-713 351-524 (591)
385 smart00320 WD40 WD40 repeats. 95.7 0.03 6.5E-07 38.2 5.5 38 487-527 3-40 (40)
386 KOG1897 Damage-specific DNA bi 95.6 7.1 0.00015 47.7 27.4 255 455-720 532-821 (1096)
387 TIGR03074 PQQ_membr_DH membran 95.6 8.1 0.00018 47.4 29.4 159 465-627 259-480 (764)
388 COG3386 Gluconolactonase [Carb 95.6 4 8.6E-05 44.5 23.9 193 513-725 39-253 (307)
389 PF15390 DUF4613: Domain of un 95.5 0.53 1.1E-05 54.1 17.0 151 499-668 20-187 (671)
390 KOG3630 Nuclear pore complex, 95.5 0.14 3E-06 62.3 12.7 146 552-700 102-260 (1405)
391 COG3490 Uncharacterized protei 95.3 2.7 5.8E-05 44.5 20.0 233 458-711 72-345 (366)
392 KOG2079 Vacuolar assembly/sort 95.3 0.063 1.4E-06 64.9 9.4 103 607-713 100-202 (1206)
393 KOG1897 Damage-specific DNA bi 95.2 11 0.00023 46.2 27.8 235 456-707 407-654 (1096)
394 PF14583 Pectate_lyase22: Olig 95.2 6.9 0.00015 43.7 27.3 236 460-713 87-380 (386)
395 KOG2395 Protein involved in va 95.0 0.44 9.6E-06 53.9 14.0 144 561-713 344-499 (644)
396 PHA03098 kelch-like protein; P 94.8 0.82 1.8E-05 53.8 17.1 190 465-671 294-515 (534)
397 PF14580 LRR_9: Leucine-rich r 94.8 0.023 5.1E-07 56.5 3.3 99 100-208 42-150 (175)
398 KOG4441 Proteins containing BT 94.8 1.5 3.2E-05 52.1 18.9 194 458-671 327-550 (571)
399 PF15390 DUF4613: Domain of un 94.4 0.93 2E-05 52.2 14.8 152 551-715 20-187 (671)
400 cd00116 LRR_RI Leucine-rich re 94.2 0.12 2.7E-06 55.8 7.7 109 99-209 80-204 (319)
401 KOG2395 Protein involved in va 94.0 0.73 1.6E-05 52.2 12.9 153 461-624 340-500 (644)
402 KOG0531 Protein phosphatase 1, 94.0 0.013 2.9E-07 66.6 -0.5 106 90-206 42-148 (414)
403 KOG2444 WD40 repeat protein [G 93.9 0.14 3.1E-06 52.2 6.7 142 564-714 32-177 (238)
404 PHA02790 Kelch-like protein; P 93.9 3 6.6E-05 48.4 18.8 187 465-670 271-473 (480)
405 KOG2079 Vacuolar assembly/sort 93.9 0.21 4.6E-06 60.6 9.0 98 561-660 98-198 (1206)
406 KOG1644 U2-associated snRNP A' 93.6 0.024 5.3E-07 56.8 0.6 74 102-178 21-94 (233)
407 KOG4194 Membrane glycoprotein 93.6 0.012 2.6E-07 67.0 -1.8 76 128-207 320-401 (873)
408 PF05694 SBP56: 56kDa selenium 93.5 7 0.00015 44.1 19.4 229 486-716 52-344 (461)
409 cd00116 LRR_RI Leucine-rich re 93.4 0.28 6E-06 53.1 8.5 148 52-208 9-175 (319)
410 PF10168 Nup88: Nuclear pore c 93.1 27 0.00059 42.6 25.4 75 552-626 86-181 (717)
411 PRK10115 protease 2; Provision 92.8 29 0.00063 42.3 28.4 241 454-717 127-397 (686)
412 PF12894 Apc4_WD40: Anaphase-p 92.7 0.27 5.8E-06 37.7 5.0 30 456-487 14-43 (47)
413 KOG4499 Ca2+-binding protein R 92.6 15 0.00031 38.1 19.0 218 461-693 22-264 (310)
414 TIGR03118 PEPCTERM_chp_1 conse 92.5 18 0.00038 39.0 24.3 212 456-676 25-288 (336)
415 KOG2444 WD40 repeat protein [G 92.4 0.44 9.5E-06 48.7 7.5 141 470-625 34-178 (238)
416 PRK13616 lipoprotein LpqB; Pro 92.4 9.9 0.00022 45.3 20.1 156 456-623 352-524 (591)
417 TIGR03118 PEPCTERM_chp_1 conse 92.1 20 0.00043 38.7 21.9 219 500-728 24-291 (336)
418 PF12234 Rav1p_C: RAVE protein 91.9 4.3 9.3E-05 48.2 16.1 112 597-713 33-155 (631)
419 PF05694 SBP56: 56kDa selenium 91.9 9.3 0.0002 43.2 17.7 219 562-788 87-348 (461)
420 COG3204 Uncharacterized protei 91.8 21 0.00045 38.3 22.0 175 551-728 86-276 (316)
421 PHA03098 kelch-like protein; P 91.7 5.5 0.00012 46.8 17.2 149 561-717 342-514 (534)
422 TIGR02604 Piru_Ver_Nterm putat 91.2 29 0.00062 38.8 24.1 149 456-614 16-203 (367)
423 KOG4499 Ca2+-binding protein R 90.9 6 0.00013 40.8 13.6 112 500-614 159-275 (310)
424 PF14655 RAB3GAP2_N: Rab3 GTPa 90.7 16 0.00035 41.5 18.6 92 683-785 308-401 (415)
425 PHA02790 Kelch-like protein; P 90.6 9.9 0.00022 44.2 17.6 145 561-717 318-473 (480)
426 PF08728 CRT10: CRT10; InterP 90.4 3.3 7.1E-05 49.7 13.1 114 510-623 113-245 (717)
427 PF10647 Gmad1: Lipoprotein Lp 90.3 14 0.00031 39.0 17.0 151 552-707 25-190 (253)
428 PLN00113 leucine-rich repeat r 89.9 0.26 5.6E-06 62.4 3.9 60 144-206 161-220 (968)
429 PF12234 Rav1p_C: RAVE protein 89.2 8.5 0.00019 45.8 15.3 101 563-666 41-155 (631)
430 PF14727 PHTB1_N: PTHB1 N-term 88.8 49 0.0011 37.7 27.4 149 510-666 36-203 (418)
431 PF12894 Apc4_WD40: Anaphase-p 88.7 1.3 2.9E-05 33.9 5.6 32 639-671 13-44 (47)
432 KOG2280 Vacuolar assembly/sort 88.4 11 0.00023 45.0 15.0 187 475-676 63-255 (829)
433 PF10168 Nup88: Nuclear pore c 88.0 59 0.0013 39.8 21.8 82 499-582 85-181 (717)
434 COG3823 Glutamine cyclotransfe 87.8 32 0.00069 35.2 15.9 183 502-701 49-247 (262)
435 KOG3207 Beta-tubulin folding c 87.4 0.36 7.7E-06 53.8 2.4 121 79-205 202-333 (505)
436 TIGR03548 mutarot_permut cycli 87.0 50 0.0011 35.9 19.3 109 561-671 72-198 (323)
437 PF14761 HPS3_N: Hermansky-Pud 87.0 37 0.0008 34.9 16.3 104 563-670 29-166 (215)
438 KOG2247 WD40 repeat-containing 87.0 0.091 2E-06 58.7 -2.4 143 555-707 39-182 (615)
439 KOG1900 Nuclear pore complex, 86.9 21 0.00046 45.2 17.1 158 459-625 84-273 (1311)
440 PF10647 Gmad1: Lipoprotein Lp 86.9 45 0.00097 35.2 18.3 110 595-711 25-141 (253)
441 KOG3630 Nuclear pore complex, 86.8 5.1 0.00011 49.6 11.5 142 509-655 110-261 (1405)
442 PF12799 LRR_4: Leucine Rich r 86.6 0.49 1.1E-05 35.7 2.1 36 148-185 2-37 (44)
443 PF02333 Phytase: Phytase; In 85.5 68 0.0015 36.0 26.5 204 465-677 67-301 (381)
444 PF14870 PSII_BNR: Photosynthe 85.5 60 0.0013 35.3 28.0 231 454-707 62-298 (302)
445 PLN02193 nitrile-specifier pro 85.2 57 0.0012 37.8 19.2 108 561-671 228-355 (470)
446 COG3823 Glutamine cyclotransfe 85.0 46 0.001 34.0 15.4 184 561-761 55-242 (262)
447 PLN03210 Resistant to P. syrin 84.1 0.75 1.6E-05 59.4 3.3 78 128-209 614-692 (1153)
448 PF10313 DUF2415: Uncharacteri 84.1 3.6 7.8E-05 30.9 5.5 31 455-485 2-34 (43)
449 TIGR02604 Piru_Ver_Nterm putat 83.7 30 0.00066 38.6 15.7 101 551-656 72-202 (367)
450 PF12799 LRR_4: Leucine Rich r 83.5 0.61 1.3E-05 35.2 1.3 36 128-164 4-40 (44)
451 COG1520 FOG: WD40-like repeat 83.4 47 0.001 37.0 17.0 153 561-720 67-223 (370)
452 PF08728 CRT10: CRT10; InterP 83.3 25 0.00055 42.4 15.2 115 596-713 103-245 (717)
453 PF10313 DUF2415: Uncharacteri 83.1 4.2 9.1E-05 30.6 5.5 32 594-625 1-34 (43)
454 KOG1916 Nuclear protein, conta 83.0 0.22 4.7E-06 59.4 -1.9 162 456-625 183-375 (1283)
455 PLN00113 leucine-rich repeat r 82.7 1 2.2E-05 57.1 3.7 79 127-208 166-246 (968)
456 PF10214 Rrn6: RNA polymerase 82.5 1.4E+02 0.0029 37.1 30.3 164 548-715 77-277 (765)
457 TIGR03548 mutarot_permut cycli 82.5 50 0.0011 35.9 16.6 110 465-584 72-198 (323)
458 PLN03210 Resistant to P. syrin 82.4 1.1 2.5E-05 57.7 4.0 76 128-208 637-714 (1153)
459 KOG4460 Nuclear pore complex, 82.3 18 0.00038 41.5 12.5 78 595-673 105-204 (741)
460 KOG4460 Nuclear pore complex, 82.2 15 0.00033 42.1 11.9 86 685-785 106-201 (741)
461 KOG1983 Tomosyn and related SN 81.3 18 0.00039 45.9 13.7 29 456-485 38-66 (993)
462 PLN02153 epithiospecifier prot 81.2 91 0.002 34.2 20.9 109 561-672 85-230 (341)
463 COG5167 VID27 Protein involved 80.5 18 0.00038 41.4 11.6 160 453-625 466-633 (776)
464 PLN02153 epithiospecifier prot 78.2 1.1E+02 0.0024 33.5 21.1 196 465-671 32-288 (341)
465 PF11715 Nup160: Nucleoporin N 78.2 12 0.00027 44.1 10.6 78 647-725 156-259 (547)
466 PRK10115 protease 2; Provision 78.0 1.8E+02 0.0038 35.6 25.6 111 553-666 129-254 (686)
467 PF14781 BBS2_N: Ciliary BBSom 78.0 65 0.0014 30.6 13.6 107 558-670 6-128 (136)
468 PF05935 Arylsulfotrans: Aryls 77.8 96 0.0021 36.1 17.5 157 562-728 114-313 (477)
469 KOG1916 Nuclear protein, conta 77.5 1 2.2E-05 53.9 1.2 122 475-605 110-236 (1283)
470 PF00560 LRR_1: Leucine Rich R 77.3 1.3 2.7E-05 28.1 1.0 22 148-171 1-22 (22)
471 PF14781 BBS2_N: Ciliary BBSom 76.0 74 0.0016 30.3 12.7 112 460-586 5-131 (136)
472 PLN02193 nitrile-specifier pro 75.6 1.6E+02 0.0035 34.0 21.0 193 466-671 176-414 (470)
473 TIGR03606 non_repeat_PQQ dehyd 75.5 61 0.0013 37.3 14.7 109 593-702 29-165 (454)
474 PF10395 Utp8: Utp8 family; I 75.1 2E+02 0.0043 34.8 26.3 253 458-720 32-311 (670)
475 smart00446 LRRcap occurring C- 74.9 1.9 4.2E-05 28.7 1.4 20 337-356 3-22 (26)
476 PF10395 Utp8: Utp8 family; I 74.8 2E+02 0.0043 34.7 21.6 171 498-676 129-314 (670)
477 PLN00033 photosystem II stabil 74.6 1.6E+02 0.0034 33.4 17.9 144 554-707 242-393 (398)
478 PF07569 Hira: TUP1-like enhan 74.6 17 0.00037 37.6 9.1 65 560-626 20-97 (219)
479 PF07250 Glyoxal_oxid_N: Glyox 74.1 43 0.00093 35.2 12.0 140 574-720 48-203 (243)
480 PF07569 Hira: TUP1-like enhan 73.3 23 0.00051 36.6 9.8 76 509-586 20-101 (219)
481 PF13449 Phytase-like: Esteras 73.3 1.5E+02 0.0032 32.5 24.0 146 551-699 20-230 (326)
482 KOG0444 Cytoskeletal regulator 72.8 0.74 1.6E-05 53.3 -1.5 50 129-180 249-299 (1255)
483 KOG1898 Splicing factor 3b, su 72.2 1.9E+02 0.004 36.5 17.8 174 477-667 854-1048(1205)
484 PF07995 GSDH: Glucose / Sorbo 70.8 55 0.0012 36.0 12.7 107 595-705 3-135 (331)
485 PF11635 Med16: Mediator compl 70.5 2.7E+02 0.0059 34.4 21.6 68 594-662 260-345 (753)
486 PRK14131 N-acetylneuraminic ac 70.3 1.9E+02 0.004 32.4 20.4 13 573-585 190-202 (376)
487 COG1520 FOG: WD40-like repeat 69.9 1.8E+02 0.004 32.2 28.4 197 512-724 69-278 (370)
488 PLN03150 hypothetical protein; 69.3 4 8.8E-05 49.1 3.6 84 122-208 404-500 (623)
489 COG5167 VID27 Protein involved 69.0 72 0.0016 36.8 12.6 100 563-667 528-632 (776)
490 PRK14131 N-acetylneuraminic ac 68.9 1.7E+02 0.0037 32.7 16.4 14 617-630 190-203 (376)
491 smart00368 LRR_RI Leucine rich 68.2 4.3 9.4E-05 27.3 2.0 24 99-122 1-24 (28)
492 TIGR03547 muta_rot_YjhT mutatr 67.2 2E+02 0.0043 31.5 19.4 42 616-657 168-209 (346)
493 TIGR03547 muta_rot_YjhT mutatr 66.9 1.1E+02 0.0024 33.5 14.3 43 476-520 168-210 (346)
494 KOG1898 Splicing factor 3b, su 65.9 2.1E+02 0.0046 36.0 16.5 139 574-719 855-1011(1205)
495 KOG2377 Uncharacterized conser 65.8 2.5E+02 0.0054 32.2 18.7 141 475-625 42-186 (657)
496 KOG2247 WD40 repeat-containing 65.5 0.91 2E-05 51.1 -2.6 147 456-620 37-184 (615)
497 PF14870 PSII_BNR: Photosynthe 64.7 2.2E+02 0.0047 31.1 27.3 240 456-719 19-265 (302)
498 TIGR02276 beta_rpt_yvtn 40-res 64.7 32 0.00069 24.7 6.4 41 647-691 1-42 (42)
499 KOG2280 Vacuolar assembly/sort 63.5 3.4E+02 0.0075 33.0 18.1 168 552-728 85-260 (829)
500 KOG2377 Uncharacterized conser 62.3 1.3E+02 0.0028 34.3 12.9 122 592-718 65-189 (657)
No 1
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.1e-38 Score=327.12 Aligned_cols=287 Identities=19% Similarity=0.317 Sum_probs=245.5
Q ss_pred ccCCCCCCCCcccceEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCC
Q 003822 442 VSGNHMGDENRSFRPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNG 521 (793)
Q Consensus 442 ~~g~~~~~~~~~~~V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~Dg 521 (793)
+.||... |.|++|+| ++..||+|+.|.++++||+.+..+..+.+ +|...|.+++|+ |+|..||+|+.||
T Consensus 111 ~~GH~e~-------Vl~~~fsp-~g~~l~tGsGD~TvR~WD~~TeTp~~t~K--gH~~WVlcvaws-PDgk~iASG~~dg 179 (480)
T KOG0271|consen 111 IAGHGEA-------VLSVQFSP-TGSRLVTGSGDTTVRLWDLDTETPLFTCK--GHKNWVLCVAWS-PDGKKIASGSKDG 179 (480)
T ss_pred cCCCCCc-------EEEEEecC-CCceEEecCCCceEEeeccCCCCcceeec--CCccEEEEEEEC-CCcchhhccccCC
Confidence 4577663 89999999 99999999999999999999999988887 999999999998 8999999999999
Q ss_pred cEEEEEcCCCCCcccccccCCceeEecCCCCeEEEEEcc-----CCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCCe
Q 003822 522 SLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNS-----MDELFLASGYSKNIALYDINSGRRLQVFADMHKEHI 596 (793)
Q Consensus 522 tV~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~-----~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V 596 (793)
+|++||.+++++....+.+| ...|++++|.| +..++++++.||+|+|||+..++++..+. ||+.+|
T Consensus 180 ~I~lwdpktg~~~g~~l~gH--------~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~ls-gHT~~V 250 (480)
T KOG0271|consen 180 SIRLWDPKTGQQIGRALRGH--------KKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLS-GHTASV 250 (480)
T ss_pred eEEEecCCCCCcccccccCc--------ccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEec-cCccce
Confidence 99999999998866655544 36788888875 45678888889999999999999999999 799999
Q ss_pred EEEEEcCCCCcEEEEEeCCCeEEEEECCCCCcc-----------------------------------------------
Q 003822 597 NVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQ----------------------------------------------- 629 (793)
Q Consensus 597 ~sv~fspdg~~~LaTgs~Dg~IrIWDlrt~~~~----------------------------------------------- 629 (793)
+|+.|--+| ++++|+.|++|++|+...+...
T Consensus 251 TCvrwGG~g--liySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY 328 (480)
T KOG0271|consen 251 TCVRWGGEG--LIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERY 328 (480)
T ss_pred EEEEEcCCc--eEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHH
Confidence 999997665 9999999999999987653210
Q ss_pred ------------------------------ceEEccCCCCeE-EEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeee
Q 003822 630 ------------------------------PCYTASSSKGNV-MVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGIT 678 (793)
Q Consensus 630 ------------------------------~~~~l~~~~~~v-sv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~ 678 (793)
++....+|...+ .+.||||+++||+++-|++|++||.++|+.+.+|.
T Consensus 329 ~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfR-- 406 (480)
T KOG0271|consen 329 EAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFR-- 406 (480)
T ss_pred HHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhh--
Confidence 011123444445 49999999999999999999999999999999886
Q ss_pred cCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCCCCccceeeeccCCccccCCccEEEEEEcCC
Q 003822 679 ATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPS 758 (793)
Q Consensus 679 ~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~ 758 (793)
+|-..++.++|+.|.+ +|++||.|.++ ++|++++.+... .|.||. +.|.++.|+|+
T Consensus 407 -GHv~~VYqvawsaDsR-LlVS~SkDsTL-Kvw~V~tkKl~~--DLpGh~-------------------DEVf~vDwspD 462 (480)
T KOG0271|consen 407 -GHVAAVYQVAWSADSR-LLVSGSKDSTL-KVWDVRTKKLKQ--DLPGHA-------------------DEVFAVDWSPD 462 (480)
T ss_pred -hccceeEEEEeccCcc-EEEEcCCCceE-EEEEeeeeeecc--cCCCCC-------------------ceEEEEEecCC
Confidence 4667899999999999 99999999999 999999998887 666665 57999999996
Q ss_pred CCceeeEeeEEEeCCCcEEEEcC
Q 003822 759 SKSEIVKVNLLASTDHCDKECSH 781 (793)
Q Consensus 759 ~~~~iv~~~ltaS~Dg~VkvW~~ 781 (793)
...++ .|+.|..+|+|..
T Consensus 463 -G~rV~----sggkdkv~~lw~~ 480 (480)
T KOG0271|consen 463 -GQRVA----SGGKDKVLRLWRH 480 (480)
T ss_pred -Cceee----cCCCceEEEeecC
Confidence 44555 7888999999963
No 2
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.3e-37 Score=324.78 Aligned_cols=280 Identities=18% Similarity=0.251 Sum_probs=247.8
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeC-CCCEEEEEEcCCcEEEEEcCCCCCc
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKK-YPSKLIAGSDNGSLKLYDIRHMPPS 534 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~-~g~~Lasgs~DgtV~vWDl~~~~~~ 534 (793)
+..+.|++ +++.||||+.+|.++||+..+...+.++. +|+..|.++.|+|. ++..+|||+.||++++|++.+...
T Consensus 178 is~~~fS~-ds~~laT~swsG~~kvW~~~~~~~~~~l~--gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~- 253 (459)
T KOG0272|consen 178 ISGCSFSR-DSKHLATGSWSGLVKVWSVPQCNLLQTLR--GHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETP- 253 (459)
T ss_pred ceeeEeec-CCCeEEEeecCCceeEeecCCcceeEEEe--ccccceeeEEEccCCCccceeeeccCCceeeeccCCCcc-
Confidence 78889999 99999999999999999999998888887 99999999999977 477999999999999999988543
Q ss_pred ccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeC
Q 003822 535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSF 614 (793)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~ 614 (793)
+..+. .|...|..++|||.|.++.+++.|.+-++||++++..+.... ||...|.+++|+|+| .+++||+.
T Consensus 254 l~~l~--------gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QE-GHs~~v~~iaf~~DG-SL~~tGGl 323 (459)
T KOG0272|consen 254 LQDLE--------GHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQE-GHSKGVFSIAFQPDG-SLAATGGL 323 (459)
T ss_pred hhhhh--------cchhhheeeeecCCCceeeecccccchhhcccccchhhHhhc-ccccccceeEecCCC-ceeeccCc
Confidence 22222 344678999999999999999999999999999998887777 799999999999999 89999999
Q ss_pred CCeEEEEECCCCCccceEEccCCCCeE-EEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeC
Q 003822 615 DQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLN 693 (793)
Q Consensus 615 Dg~IrIWDlrt~~~~~~~~l~~~~~~v-sv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspd 693 (793)
|..-+|||+|++ ..+..+.+|...+ +|+|+|+|..||+|+.|++++|||++..+.+.++ +.|..-|..+.|+|.
T Consensus 324 D~~~RvWDlRtg--r~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~i---pAH~nlVS~Vk~~p~ 398 (459)
T KOG0272|consen 324 DSLGRVWDLRTG--RCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTI---PAHSNLVSQVKYSPQ 398 (459)
T ss_pred cchhheeecccC--cEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceec---ccccchhhheEeccc
Confidence 999999999999 4556666777665 6999999999999999999999999988887666 467788889999997
Q ss_pred CCeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCCCCccceeeeccCCccccCCccEEEEEEcCCCCceeeEeeEEEeCC
Q 003822 694 GRDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKSEIVKVNLLASTD 773 (793)
Q Consensus 694 g~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~~~~iv~~~ltaS~D 773 (793)
.+.+|+|+|.|+++ +||...++.+++ +|.||+ +.|.++..+|+ ...|+ ++|.|
T Consensus 399 ~g~fL~TasyD~t~-kiWs~~~~~~~k--sLaGHe-------------------~kV~s~Dis~d-~~~i~----t~s~D 451 (459)
T KOG0272|consen 399 EGYFLVTASYDNTV-KIWSTRTWSPLK--SLAGHE-------------------GKVISLDISPD-SQAIA----TSSFD 451 (459)
T ss_pred CCeEEEEcccCcce-eeecCCCcccch--hhcCCc-------------------cceEEEEeccC-CceEE----EeccC
Confidence 66699999999999 999999999999 888876 57999999995 45555 89999
Q ss_pred CcEEEEcC
Q 003822 774 HCDKECSH 781 (793)
Q Consensus 774 g~VkvW~~ 781 (793)
.++|+|..
T Consensus 452 RT~KLW~~ 459 (459)
T KOG0272|consen 452 RTIKLWRP 459 (459)
T ss_pred ceeeeccC
Confidence 99999973
No 3
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.6e-32 Score=276.91 Aligned_cols=292 Identities=17% Similarity=0.204 Sum_probs=249.3
Q ss_pred ccCCCCCCCCcccceEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCC
Q 003822 442 VSGNHMGDENRSFRPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNG 521 (793)
Q Consensus 442 ~~g~~~~~~~~~~~V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~Dg 521 (793)
+.||... |+++.|++ |.+.+++++.||.+.|||.-+...++.++. ....|..++|+ |.|+++|.|+.|.
T Consensus 51 LkGH~~K-------i~~~~ws~-Dsr~ivSaSqDGklIvWDs~TtnK~haipl--~s~WVMtCA~s-PSg~~VAcGGLdN 119 (343)
T KOG0286|consen 51 LKGHLNK-------IYAMDWST-DSRRIVSASQDGKLIVWDSFTTNKVHAIPL--PSSWVMTCAYS-PSGNFVACGGLDN 119 (343)
T ss_pred ecccccc-------eeeeEecC-CcCeEEeeccCCeEEEEEcccccceeEEec--CceeEEEEEEC-CCCCeEEecCcCc
Confidence 4567653 99999999 999999999999999999998888888874 45789999998 7999999999999
Q ss_pred cEEEEEcCCCCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEE
Q 003822 522 SLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKF 601 (793)
Q Consensus 522 tV~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~f 601 (793)
...||++.+....... ........|.+.+.++.| .+++.+++++.|.++.+||+++|+.+..|. ||.+.|.++.+
T Consensus 120 ~Csiy~ls~~d~~g~~---~v~r~l~gHtgylScC~f-~dD~~ilT~SGD~TCalWDie~g~~~~~f~-GH~gDV~slsl 194 (343)
T KOG0286|consen 120 KCSIYPLSTRDAEGNV---RVSRELAGHTGYLSCCRF-LDDNHILTGSGDMTCALWDIETGQQTQVFH-GHTGDVMSLSL 194 (343)
T ss_pred eeEEEecccccccccc---eeeeeecCccceeEEEEE-cCCCceEecCCCceEEEEEcccceEEEEec-CCcccEEEEec
Confidence 9999999865221000 001112345677899999 559999999999999999999999999999 79999999999
Q ss_pred cCCCCcEEEEEeCCCeEEEEECCCCCccceEEccCCCCeE-EEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecC
Q 003822 602 SNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITAT 680 (793)
Q Consensus 602 spdg~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~~~~v-sv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~ 680 (793)
+|..++.|++|+-|+..++||+|.+ ..+.++.+|..-+ +++|.|+|.-+++|+.|++.++||++..+.+..+. +..
T Consensus 195 ~p~~~ntFvSg~cD~~aklWD~R~~--~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys-~~~ 271 (343)
T KOG0286|consen 195 SPSDGNTFVSGGCDKSAKLWDVRSG--QCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYS-HDS 271 (343)
T ss_pred CCCCCCeEEecccccceeeeeccCc--ceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeec-cCc
Confidence 9944599999999999999999998 4556777887766 59999999999999999999999999999988886 334
Q ss_pred CCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCCCCccceeeeccCCccccCCccEEEEEEcCCCC
Q 003822 681 GSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSK 760 (793)
Q Consensus 681 ~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~~ 760 (793)
....+.+++|+..|+ +|++|..|.++ .+||.-.++.+. .|.||+ ..|.++..+|+ .
T Consensus 272 ~~~gitSv~FS~SGR-lLfagy~d~~c-~vWDtlk~e~vg--~L~GHe-------------------NRvScl~~s~D-G 327 (343)
T KOG0286|consen 272 IICGITSVAFSKSGR-LLFAGYDDFTC-NVWDTLKGERVG--VLAGHE-------------------NRVSCLGVSPD-G 327 (343)
T ss_pred ccCCceeEEEccccc-EEEeeecCCce-eEeeccccceEE--EeeccC-------------------CeeEEEEECCC-C
Confidence 456789999999999 99999999999 999999999999 888887 36889999996 3
Q ss_pred ceeeEeeEEEeCCCcEEEEc
Q 003822 761 SEIVKVNLLASTDHCDKECS 780 (793)
Q Consensus 761 ~~iv~~~ltaS~Dg~VkvW~ 780 (793)
..+. +||.|.++|||.
T Consensus 328 ~av~----TgSWDs~lriW~ 343 (343)
T KOG0286|consen 328 MAVA----TGSWDSTLRIWA 343 (343)
T ss_pred cEEE----ecchhHheeecC
Confidence 4444 899999999994
No 4
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.3e-33 Score=296.73 Aligned_cols=237 Identities=19% Similarity=0.257 Sum_probs=217.0
Q ss_pred ceEEEEEeCC-CCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCC
Q 003822 455 RPRQFEYHPS-ISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPP 533 (793)
Q Consensus 455 ~V~~vafsP~-d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~ 533 (793)
+|.++.|||. ++..+|+|+.||++++|++++..++..+. +|...|..++|+ |+|++|+|++.|.+-++||++++..
T Consensus 219 ~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~--gH~~RVs~VafH-PsG~~L~TasfD~tWRlWD~~tk~E 295 (459)
T KOG0272|consen 219 RVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLE--GHLARVSRVAFH-PSGKFLGTASFDSTWRLWDLETKSE 295 (459)
T ss_pred ceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhh--cchhhheeeeec-CCCceeeecccccchhhcccccchh
Confidence 3899999997 47799999999999999999888888877 899999999998 8999999999999999999999765
Q ss_pred cccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEe
Q 003822 534 SIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSS 613 (793)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs 613 (793)
.+. .-.|...|.+++|+++|..+++||.|..-+|||+++|+++..+. +|..+|.+|+|+|+| ..+||||
T Consensus 296 lL~---------QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~-gH~k~I~~V~fsPNG-y~lATgs 364 (459)
T KOG0272|consen 296 LLL---------QEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLA-GHIKEILSVAFSPNG-YHLATGS 364 (459)
T ss_pred hHh---------hcccccccceeEecCCCceeeccCccchhheeecccCcEEEEec-ccccceeeEeECCCc-eEEeecC
Confidence 221 22455789999999999999999999999999999999999999 699999999999999 9999999
Q ss_pred CCCeEEEEECCCCCccceEEccCCCCeEE-EEEec-CCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEe
Q 003822 614 FDQDVKLWDLRQKPIQPCYTASSSKGNVM-VCFSP-DDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYY 691 (793)
Q Consensus 614 ~Dg~IrIWDlrt~~~~~~~~l~~~~~~vs-v~fSp-dg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afs 691 (793)
.|++++|||+|.. ..++++++|...++ |.|+| .|.+|++++.|+++++|...++.++.++. +|...|.++.++
T Consensus 365 ~Dnt~kVWDLR~r--~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLa---GHe~kV~s~Dis 439 (459)
T KOG0272|consen 365 SDNTCKVWDLRMR--SELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLA---GHEGKVISLDIS 439 (459)
T ss_pred CCCcEEEeeeccc--ccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhc---CCccceEEEEec
Confidence 9999999999987 45889999999987 99999 78999999999999999999999988886 577889999999
Q ss_pred eCCCeEEEEEeCCCcEEEEEE
Q 003822 692 LNGRDYIVSGSCDEHVVRICC 712 (793)
Q Consensus 692 pdg~~~L~Sgs~Dg~II~IWD 712 (793)
+++. +++|++.|.++ ++|.
T Consensus 440 ~d~~-~i~t~s~DRT~-KLW~ 458 (459)
T KOG0272|consen 440 PDSQ-AIATSSFDRTI-KLWR 458 (459)
T ss_pred cCCc-eEEEeccCcee-eecc
Confidence 9999 99999999999 9994
No 5
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.2e-31 Score=276.24 Aligned_cols=299 Identities=19% Similarity=0.268 Sum_probs=248.1
Q ss_pred cCCCCCCCCcccceEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCc
Q 003822 443 SGNHMGDENRSFRPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGS 522 (793)
Q Consensus 443 ~g~~~~~~~~~~~V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~Dgt 522 (793)
.||... |+|+++.| .+.++++|+.|++++|||+.+|++..++. ||...|..++++ +...++++++.|+.
T Consensus 148 ~gHlgW-------Vr~vavdP-~n~wf~tgs~DrtikIwDlatg~Lkltlt--Ghi~~vr~vavS-~rHpYlFs~gedk~ 216 (460)
T KOG0285|consen 148 SGHLGW-------VRSVAVDP-GNEWFATGSADRTIKIWDLATGQLKLTLT--GHIETVRGVAVS-KRHPYLFSAGEDKQ 216 (460)
T ss_pred hhccce-------EEEEeeCC-CceeEEecCCCceeEEEEcccCeEEEeec--chhheeeeeeec-ccCceEEEecCCCe
Confidence 466654 99999999 88999999999999999999999998887 999999999998 56679999999999
Q ss_pred EEEEEcCCCCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEc
Q 003822 523 LKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFS 602 (793)
Q Consensus 523 V~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fs 602 (793)
|+.||++..+.. +. .+.|-+.|.+++.+|..+.++++|.|.++++||+++...+..+. ||..+|..|.+.
T Consensus 217 VKCwDLe~nkvI-R~--------YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~-GH~~~V~~V~~~ 286 (460)
T KOG0285|consen 217 VKCWDLEYNKVI-RH--------YHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLS-GHTNPVASVMCQ 286 (460)
T ss_pred eEEEechhhhhH-HH--------hccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEec-CCCCcceeEEee
Confidence 999999986542 11 23455789999999999999999999999999999999999999 799999999999
Q ss_pred CCCCcEEEEEeCCCeEEEEECCCCCccceEEccCCCCeE-EEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCC
Q 003822 603 NHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATG 681 (793)
Q Consensus 603 pdg~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~~~~v-sv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~ 681 (793)
|.. -.++|||.|++|++||++.++. ..++..|...+ +++.+|....+|+++.|+ |+-|++..|..+..+. .+
T Consensus 287 ~~d-pqvit~S~D~tvrlWDl~agkt--~~tlt~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g~f~~nls---gh 359 (460)
T KOG0285|consen 287 PTD-PQVITGSHDSTVRLWDLRAGKT--MITLTHHKKSVRALCLHPKENLFASASPDN-IKQWKLPEGEFLQNLS---GH 359 (460)
T ss_pred cCC-CceEEecCCceEEEeeeccCce--eEeeecccceeeEEecCCchhhhhccCCcc-ceeccCCccchhhccc---cc
Confidence 988 4799999999999999999853 44555555555 599999999999999775 8999999999888765 45
Q ss_pred CCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCCCCccceeeeccCCccccCCccEEEEEEcCCCCc
Q 003822 682 SSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKS 761 (793)
Q Consensus 682 ~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~~~ 761 (793)
...+.+++...|| ++++|++.|.+ .+||.++|...+ .++.-- ..-++.. ...|.+.+|.. ...
T Consensus 360 ~~iintl~~nsD~--v~~~G~dng~~-~fwdwksg~nyQ--~~~t~v-----qpGSl~s------EagI~as~fDk-tg~ 422 (460)
T KOG0285|consen 360 NAIINTLSVNSDG--VLVSGGDNGSI-MFWDWKSGHNYQ--RGQTIV-----QPGSLES------EAGIFASCFDK-TGS 422 (460)
T ss_pred cceeeeeeeccCc--eEEEcCCceEE-EEEecCcCcccc--cccccc-----cCCcccc------ccceeEEeecc-cCc
Confidence 5667778887777 89999999999 999999997766 221110 1112221 23688888988 566
Q ss_pred eeeEeeEEEeCCCcEEEEcCCCCCCCCCC
Q 003822 762 EIVKVNLLASTDHCDKECSHGQHSRPSRS 790 (793)
Q Consensus 762 ~iv~~~ltaS~Dg~VkvW~~~~~~~~~~s 790 (793)
.++ +|.+|.+|++|..++.+.+.+.
T Consensus 423 rli----t~eadKtIk~~keDe~aT~Eth 447 (460)
T KOG0285|consen 423 RLI----TGEADKTIKMYKEDEHATEETH 447 (460)
T ss_pred eEE----eccCCcceEEEecccccCcccC
Confidence 677 9999999999999998877654
No 6
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1e-30 Score=262.59 Aligned_cols=296 Identities=18% Similarity=0.216 Sum_probs=237.8
Q ss_pred ccCCCCCCCCcccceEEEEEeCCCCCEEEEEeCCCeEEEEECCC-----CeEEEEEeccCCCCCEEEEEEeeCCCCEEEE
Q 003822 442 VSGNHMGDENRSFRPRQFEYHPSISCLMVFGTLDGEIVVVNHEN-----ENIVSYIPSFGAMNSVLGLCWLKKYPSKLIA 516 (793)
Q Consensus 442 ~~g~~~~~~~~~~~V~~vafsP~d~~~Lasgs~DG~I~VWd~~t-----~~~i~~l~~~~h~~~V~sv~fs~~~g~~Las 516 (793)
+.||... |+.++..+.+.+.+++++.|.++.+|++.. |.+++.+. ||...|..+..+ ++|++.++
T Consensus 11 l~gh~d~-------Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~--GHsH~v~dv~~s-~dg~~alS 80 (315)
T KOG0279|consen 11 LEGHTDW-------VTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLT--GHSHFVSDVVLS-SDGNFALS 80 (315)
T ss_pred ecCCCce-------EEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeee--ccceEecceEEc-cCCceEEe
Confidence 3566654 899999997789999999999999998754 45566666 899999999987 89999999
Q ss_pred EEcCCcEEEEEcCCCCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCCe
Q 003822 517 GSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHI 596 (793)
Q Consensus 517 gs~DgtV~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V 596 (793)
++.|+++++||+.+++.. .....|...|.+++|++++.++++++.|.+|++|++........-..+|.+.|
T Consensus 81 ~swD~~lrlWDl~~g~~t---------~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WV 151 (315)
T KOG0279|consen 81 ASWDGTLRLWDLATGEST---------RRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWV 151 (315)
T ss_pred ccccceEEEEEecCCcEE---------EEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcE
Confidence 999999999999997542 22335567899999999999999999999999999985544444443458999
Q ss_pred EEEEEcCCC-CcEEEEEeCCCeEEEEECCCCCccceEEccCCCCeEE-EEEecCCCEEEEEeCCCeEEEEEcCCCcEEEE
Q 003822 597 NVVKFSNHS-PSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVM-VCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLN 674 (793)
Q Consensus 597 ~sv~fspdg-~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~~~~vs-v~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~ 674 (793)
+|+.|+|.. ..++++++.|++|++||+++-+.. ..+.+|.+.+. +++||||..+++|+.||.+.+||++.++.+..
T Consensus 152 scvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~--~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lys 229 (315)
T KOG0279|consen 152 SCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLR--TTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYS 229 (315)
T ss_pred EEEEEcCCCCCcEEEEccCCceEEEEccCCcchh--hccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEe
Confidence 999999983 369999999999999999987443 45567888775 99999999999999999999999999999888
Q ss_pred EeeecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCCCCccceeeeccCCccccCCccEEEEE
Q 003822 675 FGITATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAY 754 (793)
Q Consensus 675 l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva 754 (793)
+. +...+.+++|+|+.- .++...+..| +|||+.++..+..+.+++-. + + .+.-.-..++++
T Consensus 230 l~----a~~~v~sl~fspnry--wL~~at~~sI-kIwdl~~~~~v~~l~~d~~g--~-----s-----~~~~~~~clsla 290 (315)
T KOG0279|consen 230 LE----AFDIVNSLCFSPNRY--WLCAATATSI-KIWDLESKAVVEELKLDGIG--P-----S-----SKAGDPICLSLA 290 (315)
T ss_pred cc----CCCeEeeEEecCCce--eEeeccCCce-EEEeccchhhhhhccccccc--c-----c-----cccCCcEEEEEE
Confidence 74 677899999999974 4444555568 99999999999955555543 1 1 111122577899
Q ss_pred EcCCCCceeeEeeEEEeCCCcEEEEcCC
Q 003822 755 TRPSSKSEIVKVNLLASTDHCDKECSHG 782 (793)
Q Consensus 755 ~~P~~~~~iv~~~ltaS~Dg~VkvW~~~ 782 (793)
|++++ ..++ .|-.|+.|++|...
T Consensus 291 ws~dG-~tLf----~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 291 WSADG-QTLF----AGYTDNVIRVWQVA 313 (315)
T ss_pred EcCCC-cEEE----eeecCCcEEEEEee
Confidence 99964 3333 57789999999864
No 7
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.2e-32 Score=288.03 Aligned_cols=283 Identities=17% Similarity=0.211 Sum_probs=239.4
Q ss_pred ceEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCc
Q 003822 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS 534 (793)
Q Consensus 455 ~V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~ 534 (793)
.|..|.|.| +|+.|++|+..|.+.+|+..+-..... ...|..+|.++.|+ .++.++++|+.+|.|++|+..-...
T Consensus 98 ~V~~v~WtP-eGRRLltgs~SGEFtLWNg~~fnFEti--lQaHDs~Vr~m~ws-~~g~wmiSgD~gG~iKyWqpnmnnV- 172 (464)
T KOG0284|consen 98 PVNVVRWTP-EGRRLLTGSQSGEFTLWNGTSFNFETI--LQAHDSPVRTMKWS-HNGTWMISGDKGGMIKYWQPNMNNV- 172 (464)
T ss_pred ceeeEEEcC-CCceeEeecccccEEEecCceeeHHHH--hhhhcccceeEEEc-cCCCEEEEcCCCceEEecccchhhh-
Confidence 389999999 999999999999999999754332222 24899999999998 8999999999999999999875432
Q ss_pred ccccccCCceeEecCC-CCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEe
Q 003822 535 IRGMHYGAGTVTFDEF-DQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSS 613 (793)
Q Consensus 535 ~~~~~~~~~~~~~~~~-~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs 613 (793)
.....|+ ..|++++|+|.+..|++++.||+|+|||....+....+. ||.-.|.+++|+|.. .++|+|+
T Consensus 173 ---------k~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~-GHgwdVksvdWHP~k-gLiasgs 241 (464)
T KOG0284|consen 173 ---------KIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLR-GHGWDVKSVDWHPTK-GLIASGS 241 (464)
T ss_pred ---------HHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheec-cCCCCcceeccCCcc-ceeEEcc
Confidence 1122233 779999999999999999999999999999999888888 799999999999998 7999999
Q ss_pred CCCeEEEEECCCCCccceEEccCCCCeE-EEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEee
Q 003822 614 FDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYL 692 (793)
Q Consensus 614 ~Dg~IrIWDlrt~~~~~~~~l~~~~~~v-sv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afsp 692 (793)
.|..|++||.+++ .++.++.+|...+ .+.|+|++++|++++.|..++++|+++.+.+.++. .|...+.++.|+|
T Consensus 242 kDnlVKlWDprSg--~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r---~Hkkdv~~~~WhP 316 (464)
T KOG0284|consen 242 KDNLVKLWDPRSG--SCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYR---GHKKDVTSLTWHP 316 (464)
T ss_pred CCceeEeecCCCc--chhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhh---cchhhheeecccc
Confidence 9999999999999 4556777887776 49999999999999999999999999888777775 5778899999999
Q ss_pred CCCeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCCCCccceeeeccCCccccCCccEEEEEEcCCCCceeeEeeEEEeC
Q 003822 693 NGRDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKSEIVKVNLLAST 772 (793)
Q Consensus 693 dg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~~~~iv~~~ltaS~ 772 (793)
-...++.+|+.||.+ ..|.+...+.+. ..-.+|...|++++|||-+ -.+ .+||.
T Consensus 317 ~~~~lftsgg~Dgsv-vh~~v~~~~p~~--------------------~i~~AHd~~iwsl~~hPlG-hil----~tgsn 370 (464)
T KOG0284|consen 317 LNESLFTSGGSDGSV-VHWVVGLEEPLG--------------------EIPPAHDGEIWSLAYHPLG-HIL----ATGSN 370 (464)
T ss_pred ccccceeeccCCCce-EEEecccccccc--------------------CCCcccccceeeeeccccc-eeE----eecCC
Confidence 888799999999999 999987555544 2223677899999999963 333 36889
Q ss_pred CCcEEEEcCCCC
Q 003822 773 DHCDKECSHGQH 784 (793)
Q Consensus 773 Dg~VkvW~~~~~ 784 (793)
|.++|+|.....
T Consensus 371 d~t~rfw~r~rp 382 (464)
T KOG0284|consen 371 DRTVRFWTRNRP 382 (464)
T ss_pred CcceeeeccCCC
Confidence 999999986544
No 8
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.7e-31 Score=274.82 Aligned_cols=282 Identities=18% Similarity=0.274 Sum_probs=244.0
Q ss_pred cccceEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCC
Q 003822 452 RSFRPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHM 531 (793)
Q Consensus 452 ~~~~V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~ 531 (793)
++..|+.+-||| +-.++++++.|++|++||..+|+....++ ||+++|.+|.|. ..|.++++++.|-.+++||.++.
T Consensus 107 ~r~~vt~v~~hp-~~~~v~~as~d~tikv~D~~tg~~e~~Lr--GHt~sv~di~~~-a~Gk~l~tcSsDl~~~LWd~~~~ 182 (406)
T KOG0295|consen 107 HRSSVTRVIFHP-SEALVVSASEDATIKVFDTETGELERSLR--GHTDSVFDISFD-ASGKYLATCSSDLSAKLWDFDTF 182 (406)
T ss_pred cccceeeeeecc-CceEEEEecCCceEEEEEccchhhhhhhh--ccccceeEEEEe-cCccEEEecCCccchhheeHHHH
Confidence 344599999999 88899999999999999999999988777 999999999997 78999999999999999999874
Q ss_pred CCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEE
Q 003822 532 PPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFAT 611 (793)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaT 611 (793)
....+.. ..|...|.++.|-|.+.++++++.|.+|+.|++.+|.++++|. +|...|..++.+.|| .++|+
T Consensus 183 ~~c~ks~--------~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~-~h~ewvr~v~v~~DG-ti~As 252 (406)
T KOG0295|consen 183 FRCIKSL--------IGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFP-GHSEWVRMVRVNQDG-TIIAS 252 (406)
T ss_pred HHHHHHh--------cCcccceeeEEEEecCCeeeecccccceeEEecccceeEEecc-CchHhEEEEEecCCe-eEEEe
Confidence 3222222 2344568999999999999999999999999999999999999 799999999999999 89999
Q ss_pred EeCCCeEEEEECCCCCccceEEccCCCCeE-EEEEecC---------------CCEEEEEeCCCeEEEEEcCCCcEEEEE
Q 003822 612 SSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPD---------------DHYLLVSAVDNEVRQLLAVDGRVHLNF 675 (793)
Q Consensus 612 gs~Dg~IrIWDlrt~~~~~~~~l~~~~~~v-sv~fSpd---------------g~~Lasgs~Dg~I~IwDl~tg~~~~~l 675 (793)
++.|.++++|-+.++.++..+. .|..++ +++|.|. |+++++++.|++|++||+.+|.++.++
T Consensus 253 ~s~dqtl~vW~~~t~~~k~~lR--~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL 330 (406)
T KOG0295|consen 253 CSNDQTLRVWVVATKQCKAELR--EHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTL 330 (406)
T ss_pred cCCCceEEEEEeccchhhhhhh--ccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEE
Confidence 9999999999999986655444 555555 4777653 368999999999999999999999998
Q ss_pred eeecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCCCCccceeeeccCCccccCCccEEEEEE
Q 003822 676 GITATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYT 755 (793)
Q Consensus 676 ~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~ 755 (793)
. +|...|..++|+|.|+ ||+|+.+|+++ ++||+++++++. ++..|. .-|+++.|
T Consensus 331 ~---ghdnwVr~~af~p~Gk-yi~ScaDDktl-rvwdl~~~~cmk--~~~ah~-------------------hfvt~lDf 384 (406)
T KOG0295|consen 331 V---GHDNWVRGVAFSPGGK-YILSCADDKTL-RVWDLKNLQCMK--TLEAHE-------------------HFVTSLDF 384 (406)
T ss_pred e---cccceeeeeEEcCCCe-EEEEEecCCcE-EEEEeccceeee--ccCCCc-------------------ceeEEEec
Confidence 7 5777899999999999 99999999999 999999999999 666555 46888889
Q ss_pred cCCCCceeeEeeEEEeCCCcEEEEc
Q 003822 756 RPSSKSEIVKVNLLASTDHCDKECS 780 (793)
Q Consensus 756 ~P~~~~~iv~~~ltaS~Dg~VkvW~ 780 (793)
|.+.+ .++ +||-|.++|+|.
T Consensus 385 h~~~p-~Vv----TGsVdqt~KvwE 404 (406)
T KOG0295|consen 385 HKTAP-YVV----TGSVDQTVKVWE 404 (406)
T ss_pred CCCCc-eEE----eccccceeeeee
Confidence 88643 445 899999999996
No 9
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=1.6e-32 Score=292.72 Aligned_cols=292 Identities=19% Similarity=0.258 Sum_probs=244.1
Q ss_pred eeeccCCCCCCCCcccceEEEEEeCCCCCEEEEEeCCCeEEEEECCC-CeEEEEEeccCCCCCEEEEEEeeCCCCEEEEE
Q 003822 439 TLTVSGNHMGDENRSFRPRQFEYHPSISCLMVFGTLDGEIVVVNHEN-ENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAG 517 (793)
Q Consensus 439 ~l~~~g~~~~~~~~~~~V~~vafsP~d~~~Lasgs~DG~I~VWd~~t-~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasg 517 (793)
.+...||..+ |+++.|.|..+.+|++|+.|+.|+||++.. +.+++++. +|..+|.+++|+ .+|..|+++
T Consensus 207 ~~~~~gH~kg-------vsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~--gH~k~Vrd~~~s-~~g~~fLS~ 276 (503)
T KOG0282|consen 207 SHNLSGHTKG-------VSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFK--GHRKPVRDASFN-NCGTSFLSA 276 (503)
T ss_pred eeeccCCccc-------cchhhhccceeeEEEecCCCceEEEEEEecCcceehhhh--cchhhhhhhhcc-ccCCeeeee
Confidence 3445677765 899999998899999999999999999876 78888887 999999999998 899999999
Q ss_pred EcCCcEEEEEcCCCCCcccccccCCceeEecCCCCeEEEEEccCC-CEEEEEECCCcEEEEECCCCcEEEEEcccCCCCe
Q 003822 518 SDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMD-ELFLASGYSKNIALYDINSGRRLQVFADMHKEHI 596 (793)
Q Consensus 518 s~DgtV~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~-~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V 596 (793)
|.|++|++||+++|++ ...+.....++++.|+|++ +.+++|+.|+.|+.||+++++.++.+. .|-+.|
T Consensus 277 sfD~~lKlwDtETG~~----------~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd-~hLg~i 345 (503)
T KOG0282|consen 277 SFDRFLKLWDTETGQV----------LSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYD-RHLGAI 345 (503)
T ss_pred ecceeeeeeccccceE----------EEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHH-hhhhhe
Confidence 9999999999999887 3345555678999999999 788888899999999999999999998 599999
Q ss_pred EEEEEcCCCCcEEEEEeCCCeEEEEECCCCCccceEEccCCCCeEEEEEecCCCEEEEEeCCCeEEEEEcCCCcE---EE
Q 003822 597 NVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLVSAVDNEVRQLLAVDGRV---HL 673 (793)
Q Consensus 597 ~sv~fspdg~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~---~~ 673 (793)
..+.|-++| ..+++++.|++++||+.+.+..............-++..+|+++++++-+.|+.|.+|.+...-. ..
T Consensus 346 ~~i~F~~~g-~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK 424 (503)
T KOG0282|consen 346 LDITFVDEG-RRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKK 424 (503)
T ss_pred eeeEEccCC-ceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhh
Confidence 999999999 89999999999999999987433222222111222589999999999999999999998654321 12
Q ss_pred EEeeecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCCCCccceeeeccCCccccCCccEEEE
Q 003822 674 NFGITATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAA 753 (793)
Q Consensus 674 ~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sv 753 (793)
.++++. ..+....+.|||||+ +|++|+.||.+ .+||.+|-+++. .+++|+ .++.++
T Consensus 425 ~feGh~-vaGys~~v~fSpDG~-~l~SGdsdG~v-~~wdwkt~kl~~--~lkah~-------------------~~ci~v 480 (503)
T KOG0282|consen 425 RFEGHS-VAGYSCQVDFSPDGR-TLCSGDSDGKV-NFWDWKTTKLVS--KLKAHD-------------------QPCIGV 480 (503)
T ss_pred hhccee-ccCceeeEEEcCCCC-eEEeecCCccE-EEeechhhhhhh--ccccCC-------------------cceEEE
Confidence 333222 223556788999999 99999999999 999999999988 666654 589999
Q ss_pred EEcCCCCceeeEeeEEEeCCCcEEEEc
Q 003822 754 YTRPSSKSEIVKVNLLASTDHCDKECS 780 (793)
Q Consensus 754 a~~P~~~~~iv~~~ltaS~Dg~VkvW~ 780 (793)
.|||...+.++ +++.||.|++|+
T Consensus 481 ~wHP~e~Skva----t~~w~G~Ikiwd 503 (503)
T KOG0282|consen 481 DWHPVEPSKVA----TCGWDGLIKIWD 503 (503)
T ss_pred EecCCCcceeE----ecccCceeEecC
Confidence 99999999999 999999999996
No 10
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.98 E-value=2.4e-30 Score=295.48 Aligned_cols=288 Identities=19% Similarity=0.304 Sum_probs=237.9
Q ss_pred ceEEEEEeCCCCCEEEEEeCCCeEEEEECCCCe--EEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCC
Q 003822 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENEN--IVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMP 532 (793)
Q Consensus 455 ~V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~--~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~ 532 (793)
.|+++.|+| ++..+++++.++.+++|+..+.+ ....+ .+|...|.+++|+ +++.++++|+.|++|++||+....
T Consensus 161 sv~~~~fs~-~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l--~~h~~~v~~~~fs-~d~~~l~s~s~D~tiriwd~~~~~ 236 (456)
T KOG0266|consen 161 SVTCVDFSP-DGRALAAASSDGLIRIWKLEGIKSNLLREL--SGHTRGVSDVAFS-PDGSYLLSGSDDKTLRIWDLKDDG 236 (456)
T ss_pred ceEEEEEcC-CCCeEEEccCCCcEEEeecccccchhhccc--cccccceeeeEEC-CCCcEEEEecCCceEEEeeccCCC
Confidence 489999999 99999999999999999997776 55554 4899999999998 799999999999999999995543
Q ss_pred CcccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEE
Q 003822 533 PSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATS 612 (793)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTg 612 (793)
..++.+ ..|...|++++|+|.+..+++|+.|++|+|||+++++++..+. +|.+.|++++|++++ ++|+++
T Consensus 237 ~~~~~l--------~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~-~hs~~is~~~f~~d~-~~l~s~ 306 (456)
T KOG0266|consen 237 RNLKTL--------KGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLK-GHSDGISGLAFSPDG-NLLVSA 306 (456)
T ss_pred eEEEEe--------cCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeee-ccCCceEEEEECCCC-CEEEEc
Confidence 332222 2566789999999999888999999999999999999999999 799999999999999 899999
Q ss_pred eCCCeEEEEECCCCCccceEEccCCCCe---EEEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEE
Q 003822 613 SFDQDVKLWDLRQKPIQPCYTASSSKGN---VMVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNYTRS 689 (793)
Q Consensus 613 s~Dg~IrIWDlrt~~~~~~~~l~~~~~~---vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~a 689 (793)
+.|+.|++||+.++.......+.++... ..+.|+|+|.++++++.|+.+++||+..++....+..+......+....
T Consensus 307 s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~ 386 (456)
T KOG0266|consen 307 SYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPT 386 (456)
T ss_pred CCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEeccc
Confidence 9999999999999853223344444333 4599999999999999999999999999999888875443322333444
Q ss_pred EeeCCCeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCCCCccceeeeccCCccccCCccEEEEEEcCCCCceeeEeeEE
Q 003822 690 YYLNGRDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKSEIVKVNLL 769 (793)
Q Consensus 690 fspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~~~~iv~~~lt 769 (793)
.++.+. ++++|+.|+.| ++||..++..+. .+.||. ...|..+.+|| ..+.++ +
T Consensus 387 ~~~~~~-~i~sg~~d~~v-~~~~~~s~~~~~--~l~~h~------------------~~~~~~~~~~~-~~~~~~----s 439 (456)
T KOG0266|consen 387 LSTGGK-LIYSGSEDGSV-YVWDSSSGGILQ--RLEGHS------------------KAAVSDLSSHP-TENLIA----S 439 (456)
T ss_pred ccCCCC-eEEEEeCCceE-EEEeCCccchhh--hhcCCC------------------CCceeccccCC-CcCeee----e
Confidence 566777 99999999999 999999998888 777772 24688899999 455555 5
Q ss_pred Ee--CCCcEEEEcCCC
Q 003822 770 AS--TDHCDKECSHGQ 783 (793)
Q Consensus 770 aS--~Dg~VkvW~~~~ 783 (793)
++ .|+.+++|..+.
T Consensus 440 ~s~~~d~~~~~w~~~~ 455 (456)
T KOG0266|consen 440 SSFEGDGLIRLWKYDF 455 (456)
T ss_pred cCcCCCceEEEecCCC
Confidence 55 689999998753
No 11
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=5.1e-32 Score=279.72 Aligned_cols=325 Identities=18% Similarity=0.227 Sum_probs=265.0
Q ss_pred ccccccCCCCCCCCccccceeecccccccc-ccccCceeeeeccCCCCCCCCcccceEEEEEeCCCCCEEEEEeCCCeEE
Q 003822 401 RGKTSRHKTSYPSGMSQYFYTRSLCAAKVG-SSAWPCLHTLTVSGNHMGDENRSFRPRQFEYHPSISCLMVFGTLDGEIV 479 (793)
Q Consensus 401 ~~~~r~~~~~~~p~~~~~~y~r~l~~~kl~-~~~~p~~~~l~~~g~~~~~~~~~~~V~~vafsP~d~~~Lasgs~DG~I~ 479 (793)
...+|+++|.+|||.++++|+|++++.|++ +|++||+.++ .||.++ |.|++=||..-..+++|+.||.|+
T Consensus 22 ~~~~rn~dp~lhPfe~~rEy~RALNAtKleR~fakPFv~~L--~gHrdG-------V~~lakhp~~ls~~aSGs~DG~Vk 92 (433)
T KOG0268|consen 22 QRVPRNYDPALHPFERAREYTRALNATKLERVFAKPFVGSL--DGHRDG-------VSCLAKHPNKLSTVASGSCDGEVK 92 (433)
T ss_pred cccccccCCcCChhhhHHHHHHHhhhHHHHHHhhccchhhc--cccccc-------cchhhcCcchhhhhhccccCceEE
Confidence 456789999999999999999999999999 9999999998 588886 899999996558899999999999
Q ss_pred EEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcccccccCCceeEecCCCCeEEEEEc
Q 003822 480 VVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVN 559 (793)
Q Consensus 480 VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s 559 (793)
|||+....+...+. .|.+.|.++++. . ..+++++.|.+|+.|.++.. ...++...+.+..++-+
T Consensus 93 iWnlsqR~~~~~f~--AH~G~V~Gi~v~-~--~~~~tvgdDKtvK~wk~~~~-----------p~~tilg~s~~~gIdh~ 156 (433)
T KOG0268|consen 93 IWNLSQRECIRTFK--AHEGLVRGICVT-Q--TSFFTVGDDKTVKQWKIDGP-----------PLHTILGKSVYLGIDHH 156 (433)
T ss_pred EEehhhhhhhheee--cccCceeeEEec-c--cceEEecCCcceeeeeccCC-----------cceeeeccccccccccc
Confidence 99999988888887 899999999985 2 67899999999999998873 12344455667778777
Q ss_pred cCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEECCCCCccceEEccCCCC
Q 003822 560 SMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKG 639 (793)
Q Consensus 560 ~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~~~ 639 (793)
..+..++++| ..|.|||.....++..+.. -.+.|.++.|+|....+|++|+.|+.|.+||+|+..+.....+. ..
T Consensus 157 ~~~~~FaTcG--e~i~IWD~~R~~Pv~smsw-G~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~--mR 231 (433)
T KOG0268|consen 157 RKNSVFATCG--EQIDIWDEQRDNPVSSMSW-GADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILT--MR 231 (433)
T ss_pred cccccccccC--ceeeecccccCCccceeec-CCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeee--cc
Confidence 7777887777 4599999999999999996 56789999999998889999999999999999998544333332 23
Q ss_pred eEEEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEE
Q 003822 640 NVMVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRL 719 (793)
Q Consensus 640 ~vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l 719 (793)
...++|+|.+-.+++|+.|..++.||++.-. ..+..+..|.+.+..+.|+|.|+ -+++||.|.+| +||.+..+..-
T Consensus 232 TN~IswnPeafnF~~a~ED~nlY~~DmR~l~--~p~~v~~dhvsAV~dVdfsptG~-EfvsgsyDksI-RIf~~~~~~SR 307 (433)
T KOG0268|consen 232 TNTICWNPEAFNFVAANEDHNLYTYDMRNLS--RPLNVHKDHVSAVMDVDFSPTGQ-EFVSGSYDKSI-RIFPVNHGHSR 307 (433)
T ss_pred ccceecCccccceeeccccccceehhhhhhc--ccchhhcccceeEEEeccCCCcc-hhccccccceE-EEeecCCCcch
Confidence 3358999988889999999999999988654 23444557788899999999999 89999999999 99988766433
Q ss_pred EeeeecCCCCCccceeeeccCCccccCCccEEEEEEcCCCCceeeEeeEEEeCCCcEEEEcCCCC
Q 003822 720 RDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKSEIVKVNLLASTDHCDKECSHGQH 784 (793)
Q Consensus 720 ~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~~~~iv~~~ltaS~Dg~VkvW~~~~~ 784 (793)
. ...... =..|.+|.|+-++ . +.++||+|+.||+|.....
T Consensus 308 d--iYhtkR------------------Mq~V~~Vk~S~Ds-k----yi~SGSdd~nvRlWka~As 347 (433)
T KOG0268|consen 308 D--IYHTKR------------------MQHVFCVKYSMDS-K----YIISGSDDGNVRLWKAKAS 347 (433)
T ss_pred h--hhhHhh------------------hheeeEEEEeccc-c----EEEecCCCcceeeeecchh
Confidence 2 110000 1269999999863 2 3348999999999986443
No 12
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=5.6e-31 Score=273.28 Aligned_cols=244 Identities=19% Similarity=0.276 Sum_probs=198.8
Q ss_pred eccCCCCCCCCcccceEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEee----CCCCEEEE
Q 003822 441 TVSGNHMGDENRSFRPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLK----KYPSKLIA 516 (793)
Q Consensus 441 ~~~g~~~~~~~~~~~V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~----~~g~~Las 516 (793)
...||... |.|++|+| |++.||+|+.||+|++||..+|+.+.. .+.+|...|++++|.| +...+||+
T Consensus 152 t~KgH~~W-------VlcvawsP-Dgk~iASG~~dg~I~lwdpktg~~~g~-~l~gH~K~It~Lawep~hl~p~~r~las 222 (480)
T KOG0271|consen 152 TCKGHKNW-------VLCVAWSP-DGKKIASGSKDGSIRLWDPKTGQQIGR-ALRGHKKWITALAWEPLHLVPPCRRLAS 222 (480)
T ss_pred eecCCccE-------EEEEEECC-CcchhhccccCCeEEEecCCCCCcccc-cccCcccceeEEeecccccCCCccceec
Confidence 34566664 99999999 999999999999999999999887643 2349999999999975 34579999
Q ss_pred EEcCCcEEEEEcCCCCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcE------------
Q 003822 517 GSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRR------------ 584 (793)
Q Consensus 517 gs~DgtV~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~------------ 584 (793)
++.||+|+|||+..+.+.. ....|..+|+|+.| -..+++++++.|++|++|+...|++
T Consensus 223 ~skDg~vrIWd~~~~~~~~---------~lsgHT~~VTCvrw-GG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN 292 (480)
T KOG0271|consen 223 SSKDGSVRIWDTKLGTCVR---------TLSGHTASVTCVRW-GGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVN 292 (480)
T ss_pred ccCCCCEEEEEccCceEEE---------EeccCccceEEEEE-cCCceEEecCCCceEEEEEccchhHHHhhcccchhee
Confidence 9999999999998866521 12345566777777 3355666666677777777665432
Q ss_pred -------------------------------------------------------------------EEEEcccCCCCeE
Q 003822 585 -------------------------------------------------------------------LQVFADMHKEHIN 597 (793)
Q Consensus 585 -------------------------------------------------------------------l~~~~~gh~~~V~ 597 (793)
+..+. +|+.-|+
T Consensus 293 ~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmt-gHq~lVn 371 (480)
T KOG0271|consen 293 HLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMT-GHQALVN 371 (480)
T ss_pred eeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhh-chhhhee
Confidence 22233 6888899
Q ss_pred EEEEcCCCCcEEEEEeCCCeEEEEECCCCCccceEEccCCCCeE-EEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEe
Q 003822 598 VVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFG 676 (793)
Q Consensus 598 sv~fspdg~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~~~~v-sv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~ 676 (793)
.+.|+||+ .++|+++.|..|++||.++++ .+.++.+|-..+ .++|+.|.+.|++|+.|.++++|++++.++...+.
T Consensus 372 ~V~fSPd~-r~IASaSFDkSVkLW~g~tGk--~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLp 448 (480)
T KOG0271|consen 372 HVSFSPDG-RYIASASFDKSVKLWDGRTGK--FLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLP 448 (480)
T ss_pred eEEECCCc-cEEEEeecccceeeeeCCCcc--hhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCC
Confidence 99999999 899999999999999999994 456677887776 59999999999999999999999999998876663
Q ss_pred eecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEE
Q 003822 677 ITATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICC 712 (793)
Q Consensus 677 ~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWD 712 (793)
+|...++.+.|+|||+ .+++|+.|..+ ++|.
T Consensus 449 ---Gh~DEVf~vDwspDG~-rV~sggkdkv~-~lw~ 479 (480)
T KOG0271|consen 449 ---GHADEVFAVDWSPDGQ-RVASGGKDKVL-RLWR 479 (480)
T ss_pred ---CCCceEEEEEecCCCc-eeecCCCceEE-Eeec
Confidence 5778999999999999 99999999888 9994
No 13
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.97 E-value=1.9e-29 Score=268.22 Aligned_cols=274 Identities=20% Similarity=0.325 Sum_probs=231.4
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcc
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSI 535 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~ 535 (793)
|++++|+. +|..||+|+.||.++||+.. |..+.++. .|.++|.++.|+ ..|++|++++.|+++.+||..++...
T Consensus 238 VT~L~Wn~-~G~~LatG~~~G~~riw~~~-G~l~~tl~--~HkgPI~slKWn-k~G~yilS~~vD~ttilwd~~~g~~~- 311 (524)
T KOG0273|consen 238 VTSLDWNN-DGTLLATGSEDGEARIWNKD-GNLISTLG--QHKGPIFSLKWN-KKGTYILSGGVDGTTILWDAHTGTVK- 311 (524)
T ss_pred cceEEecC-CCCeEEEeecCcEEEEEecC-chhhhhhh--ccCCceEEEEEc-CCCCEEEeccCCccEEEEeccCceEE-
Confidence 99999999 99999999999999999976 55665654 799999999997 89999999999999999999886542
Q ss_pred cccccCCceeEecCC-CCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeC
Q 003822 536 RGMHYGAGTVTFDEF-DQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSF 614 (793)
Q Consensus 536 ~~~~~~~~~~~~~~~-~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~ 614 (793)
..|..+ .+-..|.| ..+..|++++.|+.|+|+-+....++.++. +|.++|.++.|+|.+ .+|+++|.
T Consensus 312 ---------q~f~~~s~~~lDVdW-~~~~~F~ts~td~~i~V~kv~~~~P~~t~~-GH~g~V~alk~n~tg-~LLaS~Sd 379 (524)
T KOG0273|consen 312 ---------QQFEFHSAPALDVDW-QSNDEFATSSTDGCIHVCKVGEDRPVKTFI-GHHGEVNALKWNPTG-SLLASCSD 379 (524)
T ss_pred ---------EeeeeccCCccceEE-ecCceEeecCCCceEEEEEecCCCcceeee-cccCceEEEEECCCC-ceEEEecC
Confidence 122222 23366778 567888999999999999999999999999 699999999999999 89999999
Q ss_pred CCeEEEEECCCCCccceEEccCCC-CeEEEEEecCC---------CEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCC
Q 003822 615 DQDVKLWDLRQKPIQPCYTASSSK-GNVMVCFSPDD---------HYLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQ 684 (793)
Q Consensus 615 Dg~IrIWDlrt~~~~~~~~l~~~~-~~vsv~fSpdg---------~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~ 684 (793)
|++++||..... .....+..|. .++++.|+|+| ..+++++.|++|++||+..|.++..|. .|...
T Consensus 380 D~TlkiWs~~~~--~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~---kH~~p 454 (524)
T KOG0273|consen 380 DGTLKIWSMGQS--NSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLM---KHQEP 454 (524)
T ss_pred CCeeEeeecCCC--cchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeec---cCCCc
Confidence 999999998765 3445556665 44579999965 468999999999999999999999885 57789
Q ss_pred cEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCCCCccceeeeccCCccccCCccEEEEEEcCCCCceee
Q 003822 685 NYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKSEIV 764 (793)
Q Consensus 685 v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~~~~iv 764 (793)
|++++|+|+|+ |+++|+.||.| .+|+.++++.++ ...|.. .|..+.|+..+ +.+.
T Consensus 455 VysvafS~~g~-ylAsGs~dg~V-~iws~~~~~l~~--s~~~~~--------------------~Ifel~Wn~~G-~kl~ 509 (524)
T KOG0273|consen 455 VYSVAFSPNGR-YLASGSLDGCV-HIWSTKTGKLVK--SYQGTG--------------------GIFELCWNAAG-DKLG 509 (524)
T ss_pred eEEEEecCCCc-EEEecCCCCee-EeccccchheeE--eecCCC--------------------eEEEEEEcCCC-CEEE
Confidence 99999999999 99999999999 999999999999 666654 58899999865 4444
Q ss_pred EeeEEEeCCCcEEEEcC
Q 003822 765 KVNLLASTDHCDKECSH 781 (793)
Q Consensus 765 ~~~ltaS~Dg~VkvW~~ 781 (793)
.+-+||.+.+-++
T Consensus 510 ----~~~sd~~vcvldl 522 (524)
T KOG0273|consen 510 ----ACASDGSVCVLDL 522 (524)
T ss_pred ----EEecCCCceEEEe
Confidence 4566887777554
No 14
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.97 E-value=2.1e-29 Score=249.33 Aligned_cols=252 Identities=16% Similarity=0.282 Sum_probs=213.9
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcc
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSI 535 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~ 535 (793)
|..+...| +++.||+|+. ..|++||+++++......+.+|++.|+++.|. .+|+++++||.||+++|||++....
T Consensus 43 VNrLeiTp-dk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~-~dgrWMyTgseDgt~kIWdlR~~~~-- 117 (311)
T KOG0315|consen 43 VNRLEITP-DKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQ-CDGRWMYTGSEDGTVKIWDLRSLSC-- 117 (311)
T ss_pred eeeEEEcC-CcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEEEEe-ecCeEEEecCCCceEEEEeccCccc--
Confidence 99999999 8889998885 57999999987654444444999999999997 8999999999999999999998433
Q ss_pred cccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeCC
Q 003822 536 RGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFD 615 (793)
Q Consensus 536 ~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~D 615 (793)
...+.+..+|+++..+|+...++++..+|.|++||+....+...+...-...|.++...|+| .+++.+...
T Consensus 118 --------qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dg-sml~a~nnk 188 (311)
T KOG0315|consen 118 --------QRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDG-SMLAAANNK 188 (311)
T ss_pred --------chhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCC-cEEEEecCC
Confidence 23566778999999999999999999999999999998877666553355789999999999 899999999
Q ss_pred CeEEEEECCCC----CccceEEccCCCCeE-EEEEecCCCEEEEEeCCCeEEEEEcCCC-cEEEEEeeecCCCCCcEEEE
Q 003822 616 QDVKLWDLRQK----PIQPCYTASSSKGNV-MVCFSPDDHYLLVSAVDNEVRQLLAVDG-RVHLNFGITATGSSQNYTRS 689 (793)
Q Consensus 616 g~IrIWDlrt~----~~~~~~~l~~~~~~v-sv~fSpdg~~Lasgs~Dg~I~IwDl~tg-~~~~~l~~~~~~~~~v~s~a 689 (793)
|...+|++-+. ...|+.+++.|.+-+ .+.+|||+++||+++.|.+++||+..+. +....++ .|...++.++
T Consensus 189 G~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~---gh~rWvWdc~ 265 (311)
T KOG0315|consen 189 GNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLT---GHQRWVWDCA 265 (311)
T ss_pred ccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEee---cCCceEEeee
Confidence 99999998764 345566677777655 5999999999999999999999999887 3333333 5667999999
Q ss_pred EeeCCCeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCC
Q 003822 690 YYLNGRDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKG 728 (793)
Q Consensus 690 fspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~ 728 (793)
||.||+ ||++|+.|+.+ ++|++..++.++ ...||.
T Consensus 266 FS~dg~-YlvTassd~~~-rlW~~~~~k~v~--qy~gh~ 300 (311)
T KOG0315|consen 266 FSADGE-YLVTASSDHTA-RLWDLSAGKEVR--QYQGHH 300 (311)
T ss_pred eccCcc-EEEecCCCCce-eecccccCceee--ecCCcc
Confidence 999999 99999999999 999999999998 666665
No 15
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.97 E-value=4.3e-28 Score=252.33 Aligned_cols=277 Identities=23% Similarity=0.312 Sum_probs=229.1
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcc
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSI 535 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~ 535 (793)
|++++|+| +++++++|+.||.|++|++.+++....+. .|...+..+.|+ ++++.+++++.||.|++||+.+++...
T Consensus 12 i~~~~~~~-~~~~l~~~~~~g~i~i~~~~~~~~~~~~~--~~~~~i~~~~~~-~~~~~l~~~~~~~~i~i~~~~~~~~~~ 87 (289)
T cd00200 12 VTCVAFSP-DGKLLATGSGDGTIKVWDLETGELLRTLK--GHTGPVRDVAAS-ADGTYLASGSSDKTIRLWDLETGECVR 87 (289)
T ss_pred EEEEEEcC-CCCEEEEeecCcEEEEEEeeCCCcEEEEe--cCCcceeEEEEC-CCCCEEEEEcCCCeEEEEEcCcccceE
Confidence 99999999 88999999999999999999887766665 788889999998 677899999999999999998753311
Q ss_pred cccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeCC
Q 003822 536 RGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFD 615 (793)
Q Consensus 536 ~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~D 615 (793)
....+...+.++.|++.+..+++++.+|.|.+||+++++....+. .|...|.+++|+|++ .++++++.|
T Consensus 88 ---------~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~-~~l~~~~~~ 156 (289)
T cd00200 88 ---------TLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLR-GHTDWVNSVAFSPDG-TFVASSSQD 156 (289)
T ss_pred ---------EEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEec-cCCCcEEEEEEcCcC-CEEEEEcCC
Confidence 112344579999998886666666669999999999999999888 699999999999997 788888889
Q ss_pred CeEEEEECCCCCccceEEccCCC-CeEEEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCC
Q 003822 616 QDVKLWDLRQKPIQPCYTASSSK-GNVMVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNG 694 (793)
Q Consensus 616 g~IrIWDlrt~~~~~~~~l~~~~-~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg 694 (793)
+.|++||+++++... .+..+. .+.++.|+|+++.+++++.++.|++||+.+++.+..+. .+...+..+.|++++
T Consensus 157 ~~i~i~d~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~---~~~~~i~~~~~~~~~ 231 (289)
T cd00200 157 GTIKLWDLRTGKCVA--TLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLR---GHENGVNSVAFSPDG 231 (289)
T ss_pred CcEEEEEccccccce--eEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchh---hcCCceEEEEEcCCC
Confidence 999999998764433 333454 44569999999999999999999999999988877664 344578899999997
Q ss_pred CeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCCCCccceeeeccCCccccCCccEEEEEEcCCCCceeeEeeEEEeCCC
Q 003822 695 RDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKSEIVKVNLLASTDH 774 (793)
Q Consensus 695 ~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~~~~iv~~~ltaS~Dg 774 (793)
. ++++++.||.+ ++||+.+++.+. .+.+|. ..|.+++|+|+ ...++ +++.||
T Consensus 232 ~-~~~~~~~~~~i-~i~~~~~~~~~~--~~~~~~-------------------~~i~~~~~~~~-~~~l~----~~~~d~ 283 (289)
T cd00200 232 Y-LLASGSEDGTI-RVWDLRTGECVQ--TLSGHT-------------------NSVTSLAWSPD-GKRLA----SGSADG 283 (289)
T ss_pred c-EEEEEcCCCcE-EEEEcCCceeEE--EccccC-------------------CcEEEEEECCC-CCEEE----EecCCC
Confidence 6 88888889999 999999988887 454443 46999999995 44555 899999
Q ss_pred cEEEEc
Q 003822 775 CDKECS 780 (793)
Q Consensus 775 ~VkvW~ 780 (793)
.+++|+
T Consensus 284 ~i~iw~ 289 (289)
T cd00200 284 TIRIWD 289 (289)
T ss_pred eEEecC
Confidence 999996
No 16
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=6.8e-30 Score=267.35 Aligned_cols=287 Identities=14% Similarity=0.130 Sum_probs=239.0
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCe---EEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCC
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENEN---IVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMP 532 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~---~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~ 532 (793)
|.-+.|++ +|++||+++.|.+..||.+.... ...++. +|..+|..+.|+ |+.++|++++.|..+.+||+.++.
T Consensus 227 VWfl~FS~-nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlv--gh~~~V~yi~wS-PDdryLlaCg~~e~~~lwDv~tgd 302 (519)
T KOG0293|consen 227 VWFLQFSH-NGKYLASASKDSTAIIWIVVYDVHFKLKKTLV--GHSQPVSYIMWS-PDDRYLLACGFDEVLSLWDVDTGD 302 (519)
T ss_pred EEEEEEcC-CCeeEeeccCCceEEEEEEecCcceeeeeeee--cccCceEEEEEC-CCCCeEEecCchHheeeccCCcch
Confidence 89999999 99999999999999999875433 244444 999999999998 788999999999999999999987
Q ss_pred CcccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEE
Q 003822 533 PSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATS 612 (793)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTg 612 (793)
....-..+ +...+.+++|.|++..+++|+.|+++..||+. |......++.....|.+++..+|| +++++.
T Consensus 303 ~~~~y~~~--------~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD-gn~~~~W~gvr~~~v~dlait~Dg-k~vl~v 372 (519)
T KOG0293|consen 303 LRHLYPSG--------LGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD-GNILGNWEGVRDPKVHDLAITYDG-KYVLLV 372 (519)
T ss_pred hhhhcccC--------cCCCcceeEEccCCceeEecCCCCcEEEecCC-cchhhcccccccceeEEEEEcCCC-cEEEEE
Confidence 63221111 22568899999999999999999999999998 666666664445679999999999 788888
Q ss_pred eCCCeEEEEECCCCCccceEEccCCCCeEEEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEee
Q 003822 613 SFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYL 692 (793)
Q Consensus 613 s~Dg~IrIWDlrt~~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afsp 692 (793)
+.|..|++++..+.... .....+.++.+++.|.+|+++++.-.+..+++||+...+.++.+.++..++ .+...+|-.
T Consensus 373 ~~d~~i~l~~~e~~~dr--~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~-fiIrSCFgg 449 (519)
T KOG0293|consen 373 TVDKKIRLYNREARVDR--GLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGH-FIIRSCFGG 449 (519)
T ss_pred ecccceeeechhhhhhh--ccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccc-eEEEeccCC
Confidence 89999999999876333 234456678889999999999999999999999999988888887554333 344555655
Q ss_pred CCCeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCCCCccceeeeccCCccccCCccEEEEEEcCCCCceeeEeeEEEeC
Q 003822 693 NGRDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKSEIVKVNLLAST 772 (793)
Q Consensus 693 dg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~~~~iv~~~ltaS~ 772 (793)
.+..+++|||+|+.| +||+..+|+++. +|.||. ..|++|+|+|..+.+++ +||+
T Consensus 450 ~~~~fiaSGSED~kv-yIWhr~sgkll~--~LsGHs-------------------~~vNcVswNP~~p~m~A----SasD 503 (519)
T KOG0293|consen 450 GNDKFIASGSEDSKV-YIWHRISGKLLA--VLSGHS-------------------KTVNCVSWNPADPEMFA----SASD 503 (519)
T ss_pred CCcceEEecCCCceE-EEEEccCCceeE--eecCCc-------------------ceeeEEecCCCCHHHhh----ccCC
Confidence 554599999999999 999999999999 888876 57999999999999999 9999
Q ss_pred CCcEEEEcCCCCC
Q 003822 773 DHCDKECSHGQHS 785 (793)
Q Consensus 773 Dg~VkvW~~~~~~ 785 (793)
||+||||.+....
T Consensus 504 DgtIRIWg~~~~~ 516 (519)
T KOG0293|consen 504 DGTIRIWGPSDNN 516 (519)
T ss_pred CCeEEEecCCccc
Confidence 9999999987653
No 17
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.97 E-value=8.8e-29 Score=244.87 Aligned_cols=278 Identities=14% Similarity=0.164 Sum_probs=226.4
Q ss_pred CCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcccccccCCcee
Q 003822 466 SCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTV 545 (793)
Q Consensus 466 ~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~~~~~~~~~~~ 545 (793)
.-+||+++.|.+|++|...+|.+..+++ ...+.|..+... +++..||+|+.. .|++||++++... ...
T Consensus 10 ~viLvsA~YDhTIRfWqa~tG~C~rTiq--h~dsqVNrLeiT-pdk~~LAaa~~q-hvRlyD~~S~np~--------Pv~ 77 (311)
T KOG0315|consen 10 PVILVSAGYDHTIRFWQALTGICSRTIQ--HPDSQVNRLEIT-PDKKDLAAAGNQ-HVRLYDLNSNNPN--------PVA 77 (311)
T ss_pred ceEEEeccCcceeeeeehhcCeEEEEEe--cCccceeeEEEc-CCcchhhhccCC-eeEEEEccCCCCC--------cee
Confidence 4689999999999999999999999997 345789999986 788889888865 7999999997651 233
Q ss_pred EecC-CCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEECC
Q 003822 546 TFDE-FDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLR 624 (793)
Q Consensus 546 ~~~~-~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~Dg~IrIWDlr 624 (793)
+|.. ...|+++.|..++..+++||.||+++|||++...+.+.+. |..+|++|..+|+. ..|++|..+|.|++||++
T Consensus 78 t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~--~~spVn~vvlhpnQ-teLis~dqsg~irvWDl~ 154 (311)
T KOG0315|consen 78 TFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ--HNSPVNTVVLHPNQ-TELISGDQSGNIRVWDLG 154 (311)
T ss_pred EEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc--CCCCcceEEecCCc-ceEEeecCCCcEEEEEcc
Confidence 4443 3779999999999999999999999999999988888887 88999999999998 789999999999999999
Q ss_pred CCCccceEEccCCCCeEEEEEecCCCEEEEEeCCCeEEEEEcCCCcEE---EEEeeecCCCCCcEEEEEeeCCCeEEEEE
Q 003822 625 QKPIQPCYTASSSKGNVMVCFSPDDHYLLVSAVDNEVRQLLAVDGRVH---LNFGITATGSSQNYTRSYYLNGRDYIVSG 701 (793)
Q Consensus 625 t~~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~---~~l~~~~~~~~~v~s~afspdg~~~L~Sg 701 (793)
...+...........+.++...|||.+++++...|..++|++.+.... ..+.....+...+..+.+|||++ ||+++
T Consensus 155 ~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k-~lat~ 233 (311)
T KOG0315|consen 155 ENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVK-YLATC 233 (311)
T ss_pred CCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCc-EEEee
Confidence 875554444333444456999999999999999999999998765322 11122235677889999999999 99999
Q ss_pred eCCCcEEEEEEcCCCcEEEeeeecCCCCCccceeeeccCCccccCCccEEEEEEcCCCCceeeEeeEEEeCCCcEEEEcC
Q 003822 702 SCDEHVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKSEIVKVNLLASTDHCDKECSH 781 (793)
Q Consensus 702 s~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~~~~iv~~~ltaS~Dg~VkvW~~ 781 (793)
|.|.++ +||+.++- ......++|| +..|...+|+.++ .-++ +||.|+++|+|++
T Consensus 234 ssdktv-~iwn~~~~-~kle~~l~gh-------------------~rWvWdc~FS~dg-~Ylv----Tassd~~~rlW~~ 287 (311)
T KOG0315|consen 234 SSDKTV-KIWNTDDF-FKLELVLTGH-------------------QRWVWDCAFSADG-EYLV----TASSDHTARLWDL 287 (311)
T ss_pred cCCceE-EEEecCCc-eeeEEEeecC-------------------CceEEeeeeccCc-cEEE----ecCCCCceeeccc
Confidence 999999 99999887 2222255555 4679999999964 3344 8999999999998
Q ss_pred CCCC
Q 003822 782 GQHS 785 (793)
Q Consensus 782 ~~~~ 785 (793)
....
T Consensus 288 ~~~k 291 (311)
T KOG0315|consen 288 SAGK 291 (311)
T ss_pred ccCc
Confidence 7664
No 18
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.97 E-value=5.6e-29 Score=252.27 Aligned_cols=277 Identities=21% Similarity=0.262 Sum_probs=226.0
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCC-CeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCc
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHEN-ENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS 534 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t-~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~ 534 (793)
|+++.|+| ++.++|+|+.|..|.+|++.. .+....++ +|.++|..+.|. .+++.+++++.|.+|+.||+++++..
T Consensus 50 I~~~~F~P-~gs~~aSgG~Dr~I~LWnv~gdceN~~~lk--gHsgAVM~l~~~-~d~s~i~S~gtDk~v~~wD~~tG~~~ 125 (338)
T KOG0265|consen 50 IYTIKFHP-DGSCFASGGSDRAIVLWNVYGDCENFWVLK--GHSGAVMELHGM-RDGSHILSCGTDKTVRGWDAETGKRI 125 (338)
T ss_pred EEEEEECC-CCCeEeecCCcceEEEEeccccccceeeec--cccceeEeeeec-cCCCEEEEecCCceEEEEecccceee
Confidence 99999999 999999999999999999653 23333444 999999999998 89999999999999999999998863
Q ss_pred ccccccCCceeEecCCCCeEEEEEccCCCEEEEEE-CCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEe
Q 003822 535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASG-YSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSS 613 (793)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g-~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs 613 (793)
.+ +. .|..-|+++.-..-+..++.++ .|+++++||+++...++++. .+..++++.|...+ ..+.+|+
T Consensus 126 rk-~k--------~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~--~kyqltAv~f~d~s-~qv~sgg 193 (338)
T KOG0265|consen 126 RK-HK--------GHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE--NKYQLTAVGFKDTS-DQVISGG 193 (338)
T ss_pred eh-hc--------cccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc--cceeEEEEEecccc-cceeecc
Confidence 22 22 2234466666555566777766 58999999999999999987 67789999999888 7899999
Q ss_pred CCCeEEEEECCCCCccceEEccCCCCeEE-EEEecCCCEEEEEeCCCeEEEEEcCCC----cEEEEEeeecC-CCCCcEE
Q 003822 614 FDQDVKLWDLRQKPIQPCYTASSSKGNVM-VCFSPDDHYLLVSAVDNEVRQLLAVDG----RVHLNFGITAT-GSSQNYT 687 (793)
Q Consensus 614 ~Dg~IrIWDlrt~~~~~~~~l~~~~~~vs-v~fSpdg~~Lasgs~Dg~I~IwDl~tg----~~~~~l~~~~~-~~~~v~s 687 (793)
-|+.|++||+|.+ ...+.+.||...+. +..+|+|.++.+-+.|+++++||.+.. +++..+..+.. -......
T Consensus 194 Idn~ikvWd~r~~--d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~ 271 (338)
T KOG0265|consen 194 IDNDIKVWDLRKN--DGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLK 271 (338)
T ss_pred ccCceeeeccccC--cceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcce
Confidence 9999999999987 45677888887775 999999999999999999999998753 44555543211 1234567
Q ss_pred EEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCCCCccceeeeccCCccccCCccEEEEEEcCCCCceeeEee
Q 003822 688 RSYYLNGRDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKSEIVKVN 767 (793)
Q Consensus 688 ~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~~~~iv~~~ 767 (793)
++|+|++. ++.+|+.|..+ ++||..+...+. .+.||. +.|+.+.|||. ...|.
T Consensus 272 cswsp~~~-~i~ags~dr~v-yvwd~~~r~~ly--klpGh~-------------------gsvn~~~Fhp~-e~iil--- 324 (338)
T KOG0265|consen 272 CSWSPNGT-KITAGSADRFV-YVWDTTSRRILY--KLPGHY-------------------GSVNEVDFHPT-EPIIL--- 324 (338)
T ss_pred eeccCCCC-ccccccccceE-EEeecccccEEE--EcCCcc-------------------eeEEEeeecCC-CcEEE---
Confidence 89999999 99999999999 999999888888 777765 68999999995 44444
Q ss_pred EEEeCCCcEEE
Q 003822 768 LLASTDHCDKE 778 (793)
Q Consensus 768 ltaS~Dg~Vkv 778 (793)
+++.|.+|.+
T Consensus 325 -s~~sdk~i~l 334 (338)
T KOG0265|consen 325 -SCSSDKTIYL 334 (338)
T ss_pred -EeccCceeEe
Confidence 7889988765
No 19
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.97 E-value=6.7e-30 Score=287.04 Aligned_cols=243 Identities=21% Similarity=0.312 Sum_probs=211.9
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCe--------EE---------------------EEEeccCCCCCEEEEEE
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENEN--------IV---------------------SYIPSFGAMNSVLGLCW 506 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~--------~i---------------------~~l~~~~h~~~V~sv~f 506 (793)
++|..|++ ++.++|.|..|..|++|.+...+ .+ ..-...||.++|.++.|
T Consensus 381 v~ca~fSd-dssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sF 459 (707)
T KOG0263|consen 381 VTCAEFSD-DSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSF 459 (707)
T ss_pred ceeEeecC-CcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeeee
Confidence 89999999 88999999999999999876311 00 01113499999999999
Q ss_pred eeCCCCEEEEEEcCCcEEEEEcCCCCCcccccccCCceeEe-cCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEE
Q 003822 507 LKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTF-DEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRL 585 (793)
Q Consensus 507 s~~~g~~Lasgs~DgtV~vWDl~~~~~~~~~~~~~~~~~~~-~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l 585 (793)
+ |+.++|+++|.|++|++|.+.+... .+.+ .|..+|+.+.|+|.|-+|++++.|++.++|.....+++
T Consensus 460 s-Pd~rfLlScSED~svRLWsl~t~s~----------~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~Pl 528 (707)
T KOG0263|consen 460 S-PDRRFLLSCSEDSSVRLWSLDTWSC----------LVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPL 528 (707)
T ss_pred c-ccccceeeccCCcceeeeeccccee----------EEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCch
Confidence 8 7899999999999999999998554 3334 45578999999999999999999999999999999999
Q ss_pred EEEcccCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEECCCCCccceEEccCCCCeE-EEEEecCCCEEEEEeCCCeEEEE
Q 003822 586 QVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLVSAVDNEVRQL 664 (793)
Q Consensus 586 ~~~~~gh~~~V~sv~fspdg~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~~~~v-sv~fSpdg~~Lasgs~Dg~I~Iw 664 (793)
+.+. +|.+.|.|+.|+|++ ++++|||.|.+||+||+.++... ..+.||.+.+ +++|||+|++|++|+.||.|.+|
T Consensus 529 Rifa-ghlsDV~cv~FHPNs-~Y~aTGSsD~tVRlWDv~~G~~V--RiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iW 604 (707)
T KOG0263|consen 529 RIFA-GHLSDVDCVSFHPNS-NYVATGSSDRTVRLWDVSTGNSV--RIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIW 604 (707)
T ss_pred hhhc-ccccccceEEECCcc-cccccCCCCceEEEEEcCCCcEE--EEecCCCCceEEEEEcCCCceEeecccCCcEEEE
Confidence 9999 799999999999999 89999999999999999999554 4446777776 59999999999999999999999
Q ss_pred EcCCCcEEEEEeeecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEE
Q 003822 665 LAVDGRVHLNFGITATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRL 719 (793)
Q Consensus 665 Dl~tg~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l 719 (793)
|+.+|+++..+.. |...+.++.|+.+|. .||+||.|.+| ++||+..-...
T Consensus 605 Dl~~~~~v~~l~~---Ht~ti~SlsFS~dg~-vLasgg~DnsV-~lWD~~~~~~~ 654 (707)
T KOG0263|consen 605 DLANGSLVKQLKG---HTGTIYSLSFSRDGN-VLASGGADNSV-RLWDLTKVIEL 654 (707)
T ss_pred EcCCCcchhhhhc---ccCceeEEEEecCCC-EEEecCCCCeE-EEEEchhhccc
Confidence 9999999888863 577899999999999 99999999999 99998765443
No 20
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=2.9e-28 Score=244.03 Aligned_cols=288 Identities=13% Similarity=0.162 Sum_probs=228.9
Q ss_pred ceEEEEEeCCCCCEEEEEeCCCeEEEEECCCC---eEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCC
Q 003822 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENE---NIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHM 531 (793)
Q Consensus 455 ~V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~---~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~ 531 (793)
++..++|||..|.+||+|+.|..|+||+...+ .+...+. .+|+..|.+++|+ |.|++|++||.|.++.||.-..+
T Consensus 16 r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld-~~hkrsVRsvAws-p~g~~La~aSFD~t~~Iw~k~~~ 93 (312)
T KOG0645|consen 16 RVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLD-DGHKRSVRSVAWS-PHGRYLASASFDATVVIWKKEDG 93 (312)
T ss_pred cEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEecc-ccchheeeeeeec-CCCcEEEEeeccceEEEeecCCC
Confidence 49999999943789999999999999998843 2333443 3899999999998 78999999999999999987765
Q ss_pred CCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCC---cEEEEEcccCCCCeEEEEEcCCCCcE
Q 003822 532 PPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSG---RRLQVFADMHKEHINVVKFSNHSPSI 608 (793)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg---~~l~~~~~gh~~~V~sv~fspdg~~~ 608 (793)
.-... ...-.|...|.+++|+++++++++++.|+.|.||.+..+ .++..++ +|...|..+.|+|.. .+
T Consensus 94 efecv-------~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~-~HtqDVK~V~WHPt~-dl 164 (312)
T KOG0645|consen 94 EFECV-------ATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQ-EHTQDVKHVIWHPTE-DL 164 (312)
T ss_pred ceeEE-------eeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeec-cccccccEEEEcCCc-ce
Confidence 43111 112245578999999999999999999999999999854 4677787 699999999999988 79
Q ss_pred EEEEeCCCeEEEEECC-CCCccceEEccCCCC-eEEEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcE
Q 003822 609 FATSSFDQDVKLWDLR-QKPIQPCYTASSSKG-NVMVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNY 686 (793)
Q Consensus 609 LaTgs~Dg~IrIWDlr-t~~~~~~~~l~~~~~-~vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~ 686 (793)
|+++|.|.+|++|+-. ......+.++.+|.. +.+++|+|.|..|++++.|++++||-..+.- ...+...++
T Consensus 165 L~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~-------~~~~sr~~Y 237 (312)
T KOG0645|consen 165 LFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDL-------SGMHSRALY 237 (312)
T ss_pred eEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCc-------chhcccceE
Confidence 9999999999999877 555567778888874 4479999999999999999999999866321 223556788
Q ss_pred EEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCCCCccceeeeccCCccccCCccEEEEEEcCCCCceeeEe
Q 003822 687 TRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKSEIVKV 766 (793)
Q Consensus 687 s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~~~~iv~~ 766 (793)
.++|. +| .|+||+.|+.| +++.-..+-.-. . | .+-......|...|++++|.|..++.++
T Consensus 238 ~v~W~-~~--~IaS~ggD~~i-~lf~~s~~~d~p-------~-----~--~l~~~~~~aHe~dVNsV~w~p~~~~~L~-- 297 (312)
T KOG0645|consen 238 DVPWD-NG--VIASGGGDDAI-RLFKESDSPDEP-------S-----W--NLLAKKEGAHEVDVNSVQWNPKVSNRLA-- 297 (312)
T ss_pred eeeec-cc--ceEeccCCCEE-EEEEecCCCCCc-------h-----H--HHHHhhhcccccccceEEEcCCCCCcee--
Confidence 89998 55 79999999999 999654321111 0 0 1111223467779999999997788888
Q ss_pred eEEEeCCCcEEEEcCC
Q 003822 767 NLLASTDHCDKECSHG 782 (793)
Q Consensus 767 ~ltaS~Dg~VkvW~~~ 782 (793)
+||.||.|++|.+.
T Consensus 298 --s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 298 --SGGDDGIVNFWELE 311 (312)
T ss_pred --ecCCCceEEEEEec
Confidence 99999999999864
No 21
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.97 E-value=4.9e-29 Score=250.54 Aligned_cols=240 Identities=15% Similarity=0.259 Sum_probs=204.9
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcc
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSI 535 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~ 535 (793)
|..++.++ ++++.++|+.||++++||+.+++....+. +|...|.+++|+ ++...+++|+.|.+|++|++......
T Consensus 66 v~dv~~s~-dg~~alS~swD~~lrlWDl~~g~~t~~f~--GH~~dVlsva~s-~dn~qivSGSrDkTiklwnt~g~ck~- 140 (315)
T KOG0279|consen 66 VSDVVLSS-DGNFALSASWDGTLRLWDLATGESTRRFV--GHTKDVLSVAFS-TDNRQIVSGSRDKTIKLWNTLGVCKY- 140 (315)
T ss_pred ecceEEcc-CCceEEeccccceEEEEEecCCcEEEEEE--ecCCceEEEEec-CCCceeecCCCcceeeeeeecccEEE-
Confidence 88899999 99999999999999999999998887777 999999999998 78899999999999999999774321
Q ss_pred cccccCCceeEecCCCCeEEEEEccC--CCEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEe
Q 003822 536 RGMHYGAGTVTFDEFDQLTSVHVNSM--DELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSS 613 (793)
Q Consensus 536 ~~~~~~~~~~~~~~~~~V~sv~~s~~--~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs 613 (793)
... .-.+.+.|.|+.|+|. +..++.++.|++|++||+++.+....+. ||++.++.++++||| .+.++|+
T Consensus 141 t~~-------~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~-gh~~~v~t~~vSpDG-slcasGg 211 (315)
T KOG0279|consen 141 TIH-------EDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFI-GHSGYVNTVTVSPDG-SLCASGG 211 (315)
T ss_pred EEe-------cCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccc-cccccEEEEEECCCC-CEEecCC
Confidence 100 0111467999999998 6788888999999999999999999999 799999999999999 8999999
Q ss_pred CCCeEEEEECCCCCccceEEccCCCCeEEEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCC------CCCcEE
Q 003822 614 FDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATG------SSQNYT 687 (793)
Q Consensus 614 ~Dg~IrIWDlrt~~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~------~~~v~s 687 (793)
.||.+.+||++.++ .++.+.+...+.+++|+|+.-+|+.+. +..|+|||+.+++.+..+.....+ .....+
T Consensus 212 kdg~~~LwdL~~~k--~lysl~a~~~v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~cls 288 (315)
T KOG0279|consen 212 KDGEAMLWDLNEGK--NLYSLEAFDIVNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLS 288 (315)
T ss_pred CCceEEEEEccCCc--eeEeccCCCeEeeEEecCCceeEeecc-CCceEEEeccchhhhhhccccccccccccCCcEEEE
Confidence 99999999999984 477777766666899999888777776 556999999999888777543222 234567
Q ss_pred EEEeeCCCeEEEEEeCCCcEEEEEEcC
Q 003822 688 RSYYLNGRDYIVSGSCDEHVVRICCAQ 714 (793)
Q Consensus 688 ~afspdg~~~L~Sgs~Dg~II~IWDv~ 714 (793)
++|++||. .|++|-.|+.| ++|.+.
T Consensus 289 laws~dG~-tLf~g~td~~i-rv~qv~ 313 (315)
T KOG0279|consen 289 LAWSADGQ-TLFAGYTDNVI-RVWQVA 313 (315)
T ss_pred EEEcCCCc-EEEeeecCCcE-EEEEee
Confidence 89999999 99999999999 999875
No 22
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=7.8e-28 Score=267.42 Aligned_cols=257 Identities=20% Similarity=0.303 Sum_probs=215.3
Q ss_pred cceEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCC
Q 003822 454 FRPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPP 533 (793)
Q Consensus 454 ~~V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~ 533 (793)
.+++|++++| ||+++|+|+.||.|+|||..+|-+..++. .|+..|+++.|+ ..++.+++++.||+|+.||+...+.
T Consensus 351 ~~i~~l~YSp-Dgq~iaTG~eDgKVKvWn~~SgfC~vTFt--eHts~Vt~v~f~-~~g~~llssSLDGtVRAwDlkRYrN 426 (893)
T KOG0291|consen 351 DRITSLAYSP-DGQLIATGAEDGKVKVWNTQSGFCFVTFT--EHTSGVTAVQFT-ARGNVLLSSSLDGTVRAWDLKRYRN 426 (893)
T ss_pred cceeeEEECC-CCcEEEeccCCCcEEEEeccCceEEEEec--cCCCceEEEEEE-ecCCEEEEeecCCeEEeeeecccce
Confidence 3599999999 99999999999999999999999998887 899999999998 7899999999999999999988654
Q ss_pred cccccccCCceeEecCCCCeEEEEEccCCCEEEEEECC-CcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEE
Q 003822 534 SIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYS-KNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATS 612 (793)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~D-g~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTg 612 (793)
- +. .+...+.+..|++..|.+..+.+|+.| -.|.+|++.+|+.+-.+. ||.++|.+++|+|.+ ..|++|
T Consensus 427 f-RT-------ft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLs-GHEgPVs~l~f~~~~-~~LaS~ 496 (893)
T KOG0291|consen 427 F-RT-------FTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILS-GHEGPVSGLSFSPDG-SLLASG 496 (893)
T ss_pred e-ee-------ecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhc-CCCCcceeeEEcccc-CeEEec
Confidence 1 11 111222446788888888888888866 679999999999999999 799999999999999 899999
Q ss_pred eCCCeEEEEECCCCCccceEEccCCCCeEEEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeee--------------
Q 003822 613 SFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGIT-------------- 678 (793)
Q Consensus 613 s~Dg~IrIWDlrt~~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~-------------- 678 (793)
|.|.+||+||+-... ..+-++.....+..++|+|+|+.|++++.||.|.+||...+....++++.
T Consensus 497 SWDkTVRiW~if~s~-~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~t 575 (893)
T KOG0291|consen 497 SWDKTVRIWDIFSSS-GTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRIT 575 (893)
T ss_pred cccceEEEEEeeccC-ceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceee
Confidence 999999999997642 23344555557778999999999999999999999999877665444321
Q ss_pred ---cCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCC
Q 003822 679 ---ATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRLRDISLEGK 727 (793)
Q Consensus 679 ---~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh 727 (793)
........+++|++||. +|++||....| .+|++.++-.++++.+...
T Consensus 576 a~~sa~~K~Ftti~ySaDG~-~IlAgG~sn~i-CiY~v~~~vllkkfqiS~N 625 (893)
T KOG0291|consen 576 AENSAKGKTFTTICYSADGK-CILAGGESNSI-CIYDVPEGVLLKKFQISDN 625 (893)
T ss_pred hhhcccCCceEEEEEcCCCC-EEEecCCcccE-EEEECchhheeeeEEeccc
Confidence 11224567889999999 99999999999 9999999999996666543
No 23
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=2.3e-27 Score=289.41 Aligned_cols=292 Identities=18% Similarity=0.197 Sum_probs=225.7
Q ss_pred ceEEEEEeCCCCCEEEEEeCCCeEEEEECCCC----e----EEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEE
Q 003822 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENE----N----IVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLY 526 (793)
Q Consensus 455 ~V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~----~----~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vW 526 (793)
.|++++|+| +++++|+|+.||.|+||+.... . ....+ .+...|.+++|++..+.+|++++.||+|++|
T Consensus 485 ~V~~i~fs~-dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~---~~~~~v~~l~~~~~~~~~las~~~Dg~v~lW 560 (793)
T PLN00181 485 LVCAIGFDR-DGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVEL---ASRSKLSGICWNSYIKSQVASSNFEGVVQVW 560 (793)
T ss_pred cEEEEEECC-CCCEEEEEeCCCEEEEEECCcccccccccccceEEe---cccCceeeEEeccCCCCEEEEEeCCCeEEEE
Confidence 499999999 8999999999999999997532 1 11122 3346899999987778899999999999999
Q ss_pred EcCCCCCcccccccCCceeEecCCCCeEEEEEcc-CCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCC
Q 003822 527 DIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNS-MDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHS 605 (793)
Q Consensus 527 Dl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~-~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg 605 (793)
|+.+++.. . ....|...|++++|+| ++..+++++.||+|++||++++..+..+. +...|.++.|++..
T Consensus 561 d~~~~~~~-~--------~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~--~~~~v~~v~~~~~~ 629 (793)
T PLN00181 561 DVARSQLV-T--------EMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIK--TKANICCVQFPSES 629 (793)
T ss_pred ECCCCeEE-E--------EecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEe--cCCCeEEEEEeCCC
Confidence 99875431 1 1124567899999997 45678888899999999999999998887 34689999997654
Q ss_pred CcEEEEEeCCCeEEEEECCCCCccceEEccCCCCeE-EEEEecCCCEEEEEeCCCeEEEEEcCCC------cEEEEEeee
Q 003822 606 PSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLVSAVDNEVRQLLAVDG------RVHLNFGIT 678 (793)
Q Consensus 606 ~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~~~~v-sv~fSpdg~~Lasgs~Dg~I~IwDl~tg------~~~~~l~~~ 678 (793)
+.+|++|+.||.|++||+++.. .+...+.+|...+ .+.|. ++.+|++++.|+.|++||+..+ ..+..+.
T Consensus 630 g~~latgs~dg~I~iwD~~~~~-~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~-- 705 (793)
T PLN00181 630 GRSLAFGSADHKVYYYDLRNPK-LPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFM-- 705 (793)
T ss_pred CCEEEEEeCCCeEEEEECCCCC-ccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEc--
Confidence 4899999999999999998753 2345556776655 58897 7889999999999999999753 4555554
Q ss_pred cCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCCCCccceeeeccCCccccCCccEEEEEEcCC
Q 003822 679 ATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPS 758 (793)
Q Consensus 679 ~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~ 758 (793)
.+...+..++|++++. +|++|+.|+.+ ++|+...+..+..+.+.... .+.+.....+...|.+++|+|+
T Consensus 706 -gh~~~i~~v~~s~~~~-~lasgs~D~~v-~iw~~~~~~~~~s~~~~~~~--------~~~~~~~~~~~~~V~~v~ws~~ 774 (793)
T PLN00181 706 -GHTNVKNFVGLSVSDG-YIATGSETNEV-FVYHKAFPMPVLSYKFKTID--------PVSGLEVDDASQFISSVCWRGQ 774 (793)
T ss_pred -CCCCCeeEEEEcCCCC-EEEEEeCCCEE-EEEECCCCCceEEEecccCC--------cccccccCCCCcEEEEEEEcCC
Confidence 3455677889999998 99999999999 99999888766522332221 0111122345568999999995
Q ss_pred CCceeeEeeEEEeCCCcEEEEcC
Q 003822 759 SKSEIVKVNLLASTDHCDKECSH 781 (793)
Q Consensus 759 ~~~~iv~~~ltaS~Dg~VkvW~~ 781 (793)
...++ +|+.||.|++|+.
T Consensus 775 -~~~lv----a~~~dG~I~i~~~ 792 (793)
T PLN00181 775 -SSTLV----AANSTGNIKILEM 792 (793)
T ss_pred -CCeEE----EecCCCcEEEEec
Confidence 45566 8999999999985
No 24
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.97 E-value=5.7e-28 Score=251.36 Aligned_cols=335 Identities=16% Similarity=0.232 Sum_probs=253.9
Q ss_pred ccccccccccccchhhhhhhhcccccccccccccCCCCCCCCccccceeeccccccccccccCceeeeeccCCCCCCCCc
Q 003822 373 FEHLPYGRKHKESVVSILQQREIKASQTRGKTSRHKTSYPSGMSQYFYTRSLCAAKVGSSAWPCLHTLTVSGNHMGDENR 452 (793)
Q Consensus 373 le~l~~~r~~~~si~~ilq~r~i~~~~~~~~~r~~~~~~~p~~~~~~y~r~l~~~kl~~~~~p~~~~l~~~g~~~~~~~~ 452 (793)
|+||....-.+.+..+++..+.+-.. .....+|.+.+.+.+- ..++ -|.+.
T Consensus 57 FDFLi~gelLRtsL~e~l~~kgiSsE---------------~~leIEYv~~~~aP~p---l~~~-------~hdDW---- 107 (423)
T KOG0313|consen 57 FDFLIKGELLRTSLDEHLEEKGISSE---------------EILEIEYVEAITAPKP---LQCF-------LHDDW---- 107 (423)
T ss_pred ceEEEcceeeeccHHHHHHHcCcChh---------------heeEEEEEEecCCCCc---cccc-------cchhh----
Confidence 55555444445556665544444311 1345678777765553 1122 25554
Q ss_pred ccceEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCC--CEEEEEEcCCcEEEEEcCC
Q 003822 453 SFRPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYP--SKLIAGSDNGSLKLYDIRH 530 (793)
Q Consensus 453 ~~~V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g--~~Lasgs~DgtV~vWDl~~ 530 (793)
|.++...+ +.+++|++||.++|||.. |+...++. ||.++|.+++|..++. ..|++++.|.++++|.++.
T Consensus 108 ---VSsv~~~~---~~IltgsYDg~~riWd~~-Gk~~~~~~--Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~ 178 (423)
T KOG0313|consen 108 ---VSSVKGAS---KWILTGSYDGTSRIWDLK-GKSIKTIV--GHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNV 178 (423)
T ss_pred ---hhhhcccC---ceEEEeecCCeeEEEecC-CceEEEEe--cCCcceeeeEEEecCCccceEEEecCCceEEEEEecC
Confidence 44555544 899999999999999975 77777776 9999999999975443 3699999999999999998
Q ss_pred CCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCC-------------------------CcEE
Q 003822 531 MPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINS-------------------------GRRL 585 (793)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~t-------------------------g~~l 585 (793)
+........ ....|...|.+|+..+++..+++++.|.+|+||+..+ +.++
T Consensus 179 ~~~~~~~~~-----~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~ 253 (423)
T KOG0313|consen 179 GENKVKALK-----VCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPL 253 (423)
T ss_pred chhhhhHHh-----HhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCce
Confidence 776443322 1226778899999999999999999999999999321 1244
Q ss_pred EEEcccCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEECCCCCccceEEccCCCCeEEEEEecCCCEEEEEeCCCeEEEEE
Q 003822 586 QVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLVSAVDNEVRQLL 665 (793)
Q Consensus 586 ~~~~~gh~~~V~sv~fspdg~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs~Dg~I~IwD 665 (793)
.++. ||..+|.+|.|++. ..+++++.|.+|+.||+.++... .++.+.....++.++|..+.|++|+.|..+++||
T Consensus 254 vtl~-GHt~~Vs~V~w~d~--~v~yS~SwDHTIk~WDletg~~~--~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~D 328 (423)
T KOG0313|consen 254 VTLE-GHTEPVSSVVWSDA--TVIYSVSWDHTIKVWDLETGGLK--STLTTNKSLNCISYSPLSKLLASGSSDRHIRLWD 328 (423)
T ss_pred EEec-ccccceeeEEEcCC--CceEeecccceEEEEEeecccce--eeeecCcceeEeecccccceeeecCCCCceeecC
Confidence 5566 79999999999984 58999999999999999998544 4455666777899999999999999999999999
Q ss_pred cCCCcEEEEEeeecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCc-EEEeeeecCCCCCccceeeeccCCccc
Q 003822 666 AVDGRVHLNFGITATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGR-RLRDISLEGKGSGTSMFVQSLRGDPFR 744 (793)
Q Consensus 666 l~tg~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~-~l~~~~L~gh~~~~s~~v~sl~g~~~~ 744 (793)
.+++.--..-....+|...|.++.|+|.....|++|+.|+++ ++||+++.+ .+. .+.+|+
T Consensus 329 PR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~-klWDvRS~k~ply--dI~~h~---------------- 389 (423)
T KOG0313|consen 329 PRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTV-KLWDVRSTKAPLY--DIAGHN---------------- 389 (423)
T ss_pred CCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeE-EEEEeccCCCcce--eeccCC----------------
Confidence 988642211112235677899999999999899999999999 999999988 887 777765
Q ss_pred cCCccEEEEEEcCCCCceeeEeeEEEeCCCcEEEEcCCC
Q 003822 745 DFNMSILAAYTRPSSKSEIVKVNLLASTDHCDKECSHGQ 783 (793)
Q Consensus 745 ~h~~~V~sva~~P~~~~~iv~~~ltaS~Dg~VkvW~~~~ 783 (793)
..|.++.|.... +.++|+.|.++++....+
T Consensus 390 ---DKvl~vdW~~~~------~IvSGGaD~~l~i~~~~~ 419 (423)
T KOG0313|consen 390 ---DKVLSVDWNEGG------LIVSGGADNKLRIFKGSP 419 (423)
T ss_pred ---ceEEEEeccCCc------eEEeccCcceEEEecccc
Confidence 579999999752 344899999999987643
No 25
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.96 E-value=4.3e-28 Score=244.90 Aligned_cols=236 Identities=22% Similarity=0.301 Sum_probs=205.8
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCC------eEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcC
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENE------NIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIR 529 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~------~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~ 529 (793)
|.++||+| .++++|+|+.|+...||++.+. ...+.+ .+|++-+.++.|. +...|+|++.|.+.-+||++
T Consensus 100 VMtCA~sP-Sg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l--~gHtgylScC~f~--dD~~ilT~SGD~TCalWDie 174 (343)
T KOG0286|consen 100 VMTCAYSP-SGNFVACGGLDNKCSIYPLSTRDAEGNVRVSREL--AGHTGYLSCCRFL--DDNHILTGSGDMTCALWDIE 174 (343)
T ss_pred EEEEEECC-CCCeEEecCcCceeEEEecccccccccceeeeee--cCccceeEEEEEc--CCCceEecCCCceEEEEEcc
Confidence 78899999 9999999999999999999854 223334 4999999999996 46789999999999999999
Q ss_pred CCCCcccccccCCceeEecCCCCeEEEEEcc-CCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcE
Q 003822 530 HMPPSIRGMHYGAGTVTFDEFDQLTSVHVNS-MDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSI 608 (793)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~-~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~ 608 (793)
+++... ....|.+.|.++++.| +.+.+++++.|+..++||++.+.++++|. +|...|++|.|.|+| .-
T Consensus 175 ~g~~~~---------~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~-ghesDINsv~ffP~G-~a 243 (343)
T KOG0286|consen 175 TGQQTQ---------VFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFE-GHESDINSVRFFPSG-DA 243 (343)
T ss_pred cceEEE---------EecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeec-ccccccceEEEccCC-Ce
Confidence 987621 1225667899999999 78899999999999999999999999999 799999999999999 89
Q ss_pred EEEEeCCCeEEEEECCCCCccceEEccCC-CCeEEEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcEE
Q 003822 609 FATSSFDQDVKLWDLRQKPIQPCYTASSS-KGNVMVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNYT 687 (793)
Q Consensus 609 LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~-~~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s 687 (793)
|+||+.|+++|+||+|......++.-... .++.+++||..|++|++|..|..+.+||.-.++.+..+. +|...|..
T Consensus 244 fatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~---GHeNRvSc 320 (343)
T KOG0286|consen 244 FATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLA---GHENRVSC 320 (343)
T ss_pred eeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEee---ccCCeeEE
Confidence 99999999999999999865655553322 345579999999999999999999999999998887776 57778999
Q ss_pred EEEeeCCCeEEEEEeCCCcEEEEEE
Q 003822 688 RSYYLNGRDYIVSGSCDEHVVRICC 712 (793)
Q Consensus 688 ~afspdg~~~L~Sgs~Dg~II~IWD 712 (793)
+..+|||. .+++||.|..+ |||.
T Consensus 321 l~~s~DG~-av~TgSWDs~l-riW~ 343 (343)
T KOG0286|consen 321 LGVSPDGM-AVATGSWDSTL-RIWA 343 (343)
T ss_pred EEECCCCc-EEEecchhHhe-eecC
Confidence 99999999 99999999999 9994
No 26
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=3.2e-28 Score=265.48 Aligned_cols=244 Identities=21% Similarity=0.304 Sum_probs=214.4
Q ss_pred ceEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCc
Q 003822 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS 534 (793)
Q Consensus 455 ~V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~ 534 (793)
+|.++.||| ...+++++-..|.|.|||.++...+..+.. ...+|.+..|. ...+++++|+.|..|+||+.++++..
T Consensus 15 RVKsVd~HP-tePw~la~LynG~V~IWnyetqtmVksfeV--~~~PvRa~kfi-aRknWiv~GsDD~~IrVfnynt~ekV 90 (794)
T KOG0276|consen 15 RVKSVDFHP-TEPWILAALYNGDVQIWNYETQTMVKSFEV--SEVPVRAAKFI-ARKNWIVTGSDDMQIRVFNYNTGEKV 90 (794)
T ss_pred ceeeeecCC-CCceEEEeeecCeeEEEecccceeeeeeee--cccchhhheee-eccceEEEecCCceEEEEecccceee
Confidence 499999999 778999999999999999999999988874 45789999998 67789999999999999999997752
Q ss_pred ccccccCCceeEe-cCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCC-cEEEEEcccCCCCeEEEEEcCCCCcEEEEE
Q 003822 535 IRGMHYGAGTVTF-DEFDQLTSVHVNSMDELFLASGYSKNIALYDINSG-RRLQVFADMHKEHINVVKFSNHSPSIFATS 612 (793)
Q Consensus 535 ~~~~~~~~~~~~~-~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg-~~l~~~~~gh~~~V~sv~fspdg~~~LaTg 612 (793)
..| .|.+.|.+++.||..++++++++|-+|++||.+.+ .+.++|. ||...|.+++|+|.+++.||++
T Consensus 91 ----------~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfe-GH~HyVMqv~fnPkD~ntFaS~ 159 (794)
T KOG0276|consen 91 ----------KTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFE-GHEHYVMQVAFNPKDPNTFASA 159 (794)
T ss_pred ----------EEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEc-CcceEEEEEEecCCCccceeee
Confidence 223 46688999999999999999999999999999864 6778888 7999999999999999999999
Q ss_pred eCCCeEEEEECCCCCccceEEccCCCCeE-EEEEecCC--CEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEE
Q 003822 613 SFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDD--HYLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNYTRS 689 (793)
Q Consensus 613 s~Dg~IrIWDlrt~~~~~~~~l~~~~~~v-sv~fSpdg--~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~a 689 (793)
+-|++|+||.+.+. .+.+++.+|..-+ ++.|-+.| .+|++|+.|..++|||..+..++++++ +|...+..+.
T Consensus 160 sLDrTVKVWslgs~--~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLe---GHt~Nvs~v~ 234 (794)
T KOG0276|consen 160 SLDRTVKVWSLGSP--HPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLE---GHTNNVSFVF 234 (794)
T ss_pred eccccEEEEEcCCC--CCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhh---cccccceEEE
Confidence 99999999999876 6778888887555 69998744 799999999999999999999999997 3556677777
Q ss_pred EeeCCCeEEEEEeCCCcEEEEEEcCCCcEEE
Q 003822 690 YYLNGRDYIVSGSCDEHVVRICCAQTGRRLR 720 (793)
Q Consensus 690 fspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~ 720 (793)
|+|.-. +++|||.||++ |||+..|-+...
T Consensus 235 fhp~lp-iiisgsEDGTv-riWhs~Ty~lE~ 263 (794)
T KOG0276|consen 235 FHPELP-IIISGSEDGTV-RIWNSKTYKLEK 263 (794)
T ss_pred ecCCCc-EEEEecCCccE-EEecCcceehhh
Confidence 888877 99999999999 999998877665
No 27
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.96 E-value=6.8e-27 Score=251.50 Aligned_cols=294 Identities=17% Similarity=0.165 Sum_probs=230.6
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEe-ccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCc
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIP-SFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS 534 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~-~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~ 534 (793)
|+|+.|+| |+.++|+++.||+|.+||-.+|+.+..+. ..+|.+.|.+++|+ |++..++|++.|.+++|||+.+....
T Consensus 193 V~~VRysP-DG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWs-PDs~~~~T~SaDkt~KIWdVs~~slv 270 (603)
T KOG0318|consen 193 VNCVRYSP-DGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWS-PDSTQFLTVSADKTIKIWDVSTNSLV 270 (603)
T ss_pred eeeEEECC-CCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEEC-CCCceEEEecCCceEEEEEeeccceE
Confidence 99999999 89999999999999999999999998886 45799999999998 79999999999999999999876431
Q ss_pred cccc-------------c---------------------cCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECC
Q 003822 535 IRGM-------------H---------------------YGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDIN 580 (793)
Q Consensus 535 ~~~~-------------~---------------------~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~ 580 (793)
..-. . .....+...|...|+++..++++.++++++.||.|.-||+.
T Consensus 271 ~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~ 350 (603)
T KOG0318|consen 271 STWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSG 350 (603)
T ss_pred EEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecC
Confidence 1100 0 01112234577889999999999999999999999999998
Q ss_pred CCcEEE-----------EEc---------------------------------ccC------------------------
Q 003822 581 SGRRLQ-----------VFA---------------------------------DMH------------------------ 592 (793)
Q Consensus 581 tg~~l~-----------~~~---------------------------------~gh------------------------ 592 (793)
+|..-+ .+. -++
T Consensus 351 ~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~ 430 (603)
T KOG0318|consen 351 SGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVL 430 (603)
T ss_pred CccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEE
Confidence 653211 000 000
Q ss_pred ------------CCCeEEEEEcCCCCcEEEEEeCCCeEEEEECCCCCccceEEccCCCCeE-EEEEecCCCEEEEEeCCC
Q 003822 593 ------------KEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLVSAVDN 659 (793)
Q Consensus 593 ------------~~~V~sv~fspdg~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~~~~v-sv~fSpdg~~Lasgs~Dg 659 (793)
.-...+++++|++ ..++.|+.||.|+||.+.............|.+.+ .++|||||.|||++...+
T Consensus 431 l~~~~~~~~~~~~y~~s~vAv~~~~-~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~r 509 (603)
T KOG0318|consen 431 LQDQTKVSSIPIGYESSAVAVSPDG-SEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASR 509 (603)
T ss_pred EecCCcceeeccccccceEEEcCCC-CEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCC
Confidence 0123567889998 89999999999999999886555554444555555 599999999999999999
Q ss_pred eEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCCCCccceeeecc
Q 003822 660 EVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLR 739 (793)
Q Consensus 660 ~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~ 739 (793)
.+.+||+.+.+..... ..-|...+.+++|+|+.. .+|+||.|..| .||++......- .+++
T Consensus 510 kvv~yd~~s~~~~~~~--w~FHtakI~~~aWsP~n~-~vATGSlDt~V-iiysv~kP~~~i--~ikn------------- 570 (603)
T KOG0318|consen 510 KVVLYDVASREVKTNR--WAFHTAKINCVAWSPNNK-LVATGSLDTNV-IIYSVKKPAKHI--IIKN------------- 570 (603)
T ss_pred cEEEEEcccCceecce--eeeeeeeEEEEEeCCCce-EEEeccccceE-EEEEccChhhhe--Eecc-------------
Confidence 9999999988763222 234778899999999999 99999999999 999997654432 3322
Q ss_pred CCccccCCccEEEEEEcCCCCceeeEeeEEEeCCCcEEEEcCC
Q 003822 740 GDPFRDFNMSILAAYTRPSSKSEIVKVNLLASTDHCDKECSHG 782 (793)
Q Consensus 740 g~~~~~h~~~V~sva~~P~~~~~iv~~~ltaS~Dg~VkvW~~~ 782 (793)
.|.+.|++++|--. ..++ +++.|..||+|+..
T Consensus 571 -----AH~~gVn~v~wlde--~tvv----SsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 571 -----AHLGGVNSVAWLDE--STVV----SSGQDANIKVWNVT 602 (603)
T ss_pred -----ccccCceeEEEecC--ceEE----eccCcceeEEeccc
Confidence 34566999999754 3444 88999999999974
No 28
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.96 E-value=4.1e-27 Score=244.08 Aligned_cols=279 Identities=15% Similarity=0.151 Sum_probs=230.2
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcc
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSI 535 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~ 535 (793)
|.+++.+| +.++++||+.|..-.+|++.++.....+. +|...|+++.|+ .+|.+||||+.+|.|+||+..++....
T Consensus 67 vFavsl~P-~~~l~aTGGgDD~AflW~~~~ge~~~elt--gHKDSVt~~~Fs-hdgtlLATGdmsG~v~v~~~stg~~~~ 142 (399)
T KOG0296|consen 67 VFAVSLHP-NNNLVATGGGDDLAFLWDISTGEFAGELT--GHKDSVTCCSFS-HDGTLLATGDMSGKVLVFKVSTGGEQW 142 (399)
T ss_pred eEEEEeCC-CCceEEecCCCceEEEEEccCCcceeEec--CCCCceEEEEEc-cCceEEEecCCCccEEEEEcccCceEE
Confidence 89999999 99999999999999999999999877776 999999999998 899999999999999999999876532
Q ss_pred cccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeCC
Q 003822 536 RGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFD 615 (793)
Q Consensus 536 ~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~D 615 (793)
.. ...-..+.-+.|||....+++|+.||.+.+|.+.++...+.+. ||+.++++=.|.|+| +.++++..|
T Consensus 143 ~~---------~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~-Gh~~~ct~G~f~pdG-Kr~~tgy~d 211 (399)
T KOG0296|consen 143 KL---------DQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMS-GHNSPCTCGEFIPDG-KRILTGYDD 211 (399)
T ss_pred Ee---------ecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEec-CCCCCcccccccCCC-ceEEEEecC
Confidence 21 1223567788999999999999999999999999988888898 799999999999998 899999999
Q ss_pred CeEEEEECCCCCccceEE------c-------------cCCC-----------CeE--------------------E---
Q 003822 616 QDVKLWDLRQKPIQPCYT------A-------------SSSK-----------GNV--------------------M--- 642 (793)
Q Consensus 616 g~IrIWDlrt~~~~~~~~------l-------------~~~~-----------~~v--------------------s--- 642 (793)
|+|++||..++.+..... . .+.. +.+ +
T Consensus 212 gti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~ 291 (399)
T KOG0296|consen 212 GTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVES 291 (399)
T ss_pred ceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhh
Confidence 999999999874322221 0 0000 000 1
Q ss_pred EEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEEee
Q 003822 643 VCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRLRDI 722 (793)
Q Consensus 643 v~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~ 722 (793)
+.|+..=...|+|+.||+|.|||+...++...+ .+...|+.+.|-+ .. +|++++.||.| +.||.++|+++.
T Consensus 292 ~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c----~he~~V~~l~w~~-t~-~l~t~c~~g~v-~~wDaRtG~l~~-- 362 (399)
T KOG0296|consen 292 IPSSSKLPLAACGSVDGTIAIYDLAASTLRHIC----EHEDGVTKLKWLN-TD-YLLTACANGKV-RQWDARTGQLKF-- 362 (399)
T ss_pred cccccccchhhcccccceEEEEecccchhheec----cCCCceEEEEEcC-cc-hheeeccCceE-EeeeccccceEE--
Confidence 112222345788999999999999988876655 3667799999998 44 89999999999 999999999998
Q ss_pred eecCCCCCccceeeeccCCccccCCccEEEEEEcCCCCceeeEeeEEEeCCCcEEEEcCC
Q 003822 723 SLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKSEIVKVNLLASTDHCDKECSHG 782 (793)
Q Consensus 723 ~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~~~~iv~~~ltaS~Dg~VkvW~~~ 782 (793)
++.||. ..|...+.+|+ ...++ ++|.|++.+|+..+
T Consensus 363 ~y~GH~-------------------~~Il~f~ls~~-~~~vv----T~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 363 TYTGHQ-------------------MGILDFALSPQ-KRLVV----TVSDDNTALVFEVP 398 (399)
T ss_pred EEecCc-------------------hheeEEEEcCC-CcEEE----EecCCCeEEEEecC
Confidence 777765 57999999994 56666 99999999999864
No 29
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.96 E-value=1.9e-27 Score=253.04 Aligned_cols=284 Identities=19% Similarity=0.222 Sum_probs=234.6
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCC--CeEEE------EE----eccCCCCCEEEEEEeeCCCCEEEEEEcCCcE
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHEN--ENIVS------YI----PSFGAMNSVLGLCWLKKYPSKLIAGSDNGSL 523 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t--~~~i~------~l----~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV 523 (793)
|.+.+|+|....++++|+.|-+.++|++.. ..... .+ +....+..|++++|+ .+|+.||+|+.||.+
T Consensus 181 V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn-~~G~~LatG~~~G~~ 259 (524)
T KOG0273|consen 181 VFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWN-NDGTLLATGSEDGEA 259 (524)
T ss_pred eEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEec-CCCCeEEEeecCcEE
Confidence 899999996666999999999999999864 11111 11 111224679999997 899999999999999
Q ss_pred EEEEcCCCCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcC
Q 003822 524 KLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSN 603 (793)
Q Consensus 524 ~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fsp 603 (793)
++|+...... ...-.|.++|.++.|+..+.++++++.|+++.+||..+|...+.+. -|..+--.|.|-.
T Consensus 260 riw~~~G~l~----------~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~-~~s~~~lDVdW~~ 328 (524)
T KOG0273|consen 260 RIWNKDGNLI----------STLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFE-FHSAPALDVDWQS 328 (524)
T ss_pred EEEecCchhh----------hhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeee-eccCCccceEEec
Confidence 9999876432 1123566899999999999999999999999999999999999998 4888878899976
Q ss_pred CCCcEEEEEeCCCeEEEEECCCCCccceEEccCCCCeEE-EEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCC
Q 003822 604 HSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVM-VCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGS 682 (793)
Q Consensus 604 dg~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~~~~vs-v~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~ 682 (793)
+. .|++++.|+.|+|+-+... .|+.++.+|.+.+. +.|.|.|..|++++.|++++||....+.....+. .|.
T Consensus 329 ~~--~F~ts~td~~i~V~kv~~~--~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~---~Hs 401 (524)
T KOG0273|consen 329 ND--EFATSSTDGCIHVCKVGED--RPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQ---AHS 401 (524)
T ss_pred Cc--eEeecCCCceEEEEEecCC--CcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhh---hhc
Confidence 54 7999999999999998776 56667777777775 9999999999999999999999988887766665 567
Q ss_pred CCcEEEEEeeCCC--------eEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCCCCccceeeeccCCccccCCccEEEEE
Q 003822 683 SQNYTRSYYLNGR--------DYIVSGSCDEHVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAY 754 (793)
Q Consensus 683 ~~v~s~afspdg~--------~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva 754 (793)
..++++.|+|+|. ..+++++.|++| ++||+..|.++. ++..| +.+|.+++
T Consensus 402 kei~t~~wsp~g~v~~n~~~~~~l~sas~dstV-~lwdv~~gv~i~--~f~kH-------------------~~pVysva 459 (524)
T KOG0273|consen 402 KEIYTIKWSPTGPVTSNPNMNLMLASASFDSTV-KLWDVESGVPIH--TLMKH-------------------QEPVYSVA 459 (524)
T ss_pred cceeeEeecCCCCccCCCcCCceEEEeecCCeE-EEEEccCCceeE--eeccC-------------------CCceEEEE
Confidence 7899999998753 379999999999 999999999998 65554 45899999
Q ss_pred EcCCCCceeeEeeEEEeCCCcEEEEcCCCCC
Q 003822 755 TRPSSKSEIVKVNLLASTDHCDKECSHGQHS 785 (793)
Q Consensus 755 ~~P~~~~~iv~~~ltaS~Dg~VkvW~~~~~~ 785 (793)
|+|++ ..++ +|+-||.|.+|+.+...
T Consensus 460 fS~~g-~ylA----sGs~dg~V~iws~~~~~ 485 (524)
T KOG0273|consen 460 FSPNG-RYLA----SGSLDGCVHIWSTKTGK 485 (524)
T ss_pred ecCCC-cEEE----ecCCCCeeEeccccchh
Confidence 99964 3344 78889999999987665
No 30
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.96 E-value=7e-28 Score=270.82 Aligned_cols=252 Identities=17% Similarity=0.260 Sum_probs=214.5
Q ss_pred CCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCC-------ccccc---------------ccCCceeEecCCCCeEE
Q 003822 498 MNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPP-------SIRGM---------------HYGAGTVTFDEFDQLTS 555 (793)
Q Consensus 498 ~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~-------~~~~~---------------~~~~~~~~~~~~~~V~s 555 (793)
...++|..|+ .++..+|.|-.|..|++|.+...+. .+... ..........|.++|.+
T Consensus 378 ~~~v~ca~fS-ddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg 456 (707)
T KOG0263|consen 378 YQGVTCAEFS-DDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYG 456 (707)
T ss_pred CCcceeEeec-CCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceee
Confidence 4578999997 7888999999999999999984321 00000 11112235678899999
Q ss_pred EEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEECCCCCccceEEcc
Q 003822 556 VHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTAS 635 (793)
Q Consensus 556 v~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~ 635 (793)
+.|+|+..++++++.|++|++|.+.+..++..++ ||..+|+.+.|+|.| .+|||+|.|++.++|...... |...+.
T Consensus 457 ~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~-GH~~PVwdV~F~P~G-yYFatas~D~tArLWs~d~~~--PlRifa 532 (707)
T KOG0263|consen 457 CSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYK-GHLAPVWDVQFAPRG-YYFATASHDQTARLWSTDHNK--PLRIFA 532 (707)
T ss_pred eeecccccceeeccCCcceeeeecccceeEEEec-CCCcceeeEEecCCc-eEEEecCCCceeeeeecccCC--chhhhc
Confidence 9999999999999999999999999999999999 799999999999999 999999999999999998864 444555
Q ss_pred CCCCeE-EEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcC
Q 003822 636 SSKGNV-MVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQ 714 (793)
Q Consensus 636 ~~~~~v-sv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~ 714 (793)
+|-.-+ ++.|+|++.|+++||.|.+|++||+.+|..++.|. +|...+.+++|+|+|+ ||++|+.||.| .+||+.
T Consensus 533 ghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~---GH~~~V~al~~Sp~Gr-~LaSg~ed~~I-~iWDl~ 607 (707)
T KOG0263|consen 533 GHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFT---GHKGPVTALAFSPCGR-YLASGDEDGLI-KIWDLA 607 (707)
T ss_pred ccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEec---CCCCceEEEEEcCCCc-eEeecccCCcE-EEEEcC
Confidence 676666 59999999999999999999999999999999886 5788999999999999 99999999999 999999
Q ss_pred CCcEEEeeeecCCCCCccceeeeccCCccccCCccEEEEEEcCCCCceeeEeeEEEeCCCcEEEEcCCCCC
Q 003822 715 TGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKSEIVKVNLLASTDHCDKECSHGQHS 785 (793)
Q Consensus 715 tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~~~~iv~~~ltaS~Dg~VkvW~~~~~~ 785 (793)
+|+++. .+.||. +.|.++.|+.+ ...++ +||.|.+|++|+.....
T Consensus 608 ~~~~v~--~l~~Ht-------------------~ti~SlsFS~d-g~vLa----sgg~DnsV~lWD~~~~~ 652 (707)
T KOG0263|consen 608 NGSLVK--QLKGHT-------------------GTIYSLSFSRD-GNVLA----SGGADNSVRLWDLTKVI 652 (707)
T ss_pred CCcchh--hhhccc-------------------CceeEEEEecC-CCEEE----ecCCCCeEEEEEchhhc
Confidence 999998 666654 68999999995 45555 88999999999976654
No 31
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=1.7e-28 Score=249.56 Aligned_cols=285 Identities=18% Similarity=0.210 Sum_probs=240.8
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEecc------CCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcC
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSF------GAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIR 529 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~------~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~ 529 (793)
+-|..|+| |+++|++|+.||-|.|||..+|+....++.. -+..+|.|++|+ .+...+++|+.||.|++|.++
T Consensus 216 ~EcA~FSP-DgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FS-RDsEMlAsGsqDGkIKvWri~ 293 (508)
T KOG0275|consen 216 VECARFSP-DGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFS-RDSEMLASGSQDGKIKVWRIE 293 (508)
T ss_pred hhheeeCC-CCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeec-ccHHHhhccCcCCcEEEEEEe
Confidence 78899999 9999999999999999999999876555432 367899999998 788999999999999999999
Q ss_pred CCCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEE
Q 003822 530 HMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIF 609 (793)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~L 609 (793)
++.+..+.- -.|...|+++.|+.++..+++++.|.++++.-+.+|++++.|+ ||...|+.+.|.++| +.+
T Consensus 294 tG~ClRrFd--------rAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfr-GHsSyvn~a~ft~dG-~~i 363 (508)
T KOG0275|consen 294 TGQCLRRFD--------RAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFR-GHSSYVNEATFTDDG-HHI 363 (508)
T ss_pred cchHHHHhh--------hhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhc-CccccccceEEcCCC-CeE
Confidence 998743322 2355789999999999999999999999999999999999999 799999999999999 899
Q ss_pred EEEeCCCeEEEEECCCCCccceEEccCCCCeE-EEEEec-CCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcEE
Q 003822 610 ATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSP-DDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNYT 687 (793)
Q Consensus 610 aTgs~Dg~IrIWDlrt~~~~~~~~l~~~~~~v-sv~fSp-dg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s 687 (793)
++++.||+|++|+.++..+...+...+....+ ++-.-| +...++++...++++|.++. |+.++++............
T Consensus 364 isaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdFi~ 442 (508)
T KOG0275|consen 364 ISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFIN 442 (508)
T ss_pred EEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCCccCCceEE
Confidence 99999999999999999887777766655444 454445 66788999999999999964 7888888754444556778
Q ss_pred EEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCCCCccceeeeccCCccccCCccEEEEEEcCCCCceeeEee
Q 003822 688 RSYYLNGRDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKSEIVKVN 767 (793)
Q Consensus 688 ~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~~~~iv~~~ 767 (793)
++.+|.|. ++.+.+.|+.+ +.|.+.+|++.+ ++.-|+ ..|.+++.||. .+.++
T Consensus 443 ~~lSpkGe-wiYcigED~vl-YCF~~~sG~LE~--tl~VhE-------------------kdvIGl~HHPH-qNllA--- 495 (508)
T KOG0275|consen 443 AILSPKGE-WIYCIGEDGVL-YCFSVLSGKLER--TLPVHE-------------------KDVIGLTHHPH-QNLLA--- 495 (508)
T ss_pred EEecCCCc-EEEEEccCcEE-EEEEeecCceee--eeeccc-------------------ccccccccCcc-cchhh---
Confidence 88999999 99999999999 999999999988 665554 46889999995 44454
Q ss_pred EEEeCCCcEEEEcC
Q 003822 768 LLASTDHCDKECSH 781 (793)
Q Consensus 768 ltaS~Dg~VkvW~~ 781 (793)
+-|.||..|+|..
T Consensus 496 -sYsEDgllKLWkp 508 (508)
T KOG0275|consen 496 -SYSEDGLLKLWKP 508 (508)
T ss_pred -hhcccchhhhcCC
Confidence 5578999999973
No 32
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.96 E-value=2.9e-26 Score=255.07 Aligned_cols=306 Identities=19% Similarity=0.189 Sum_probs=241.2
Q ss_pred CceeeeeccCCCCCCCCcccceEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEE
Q 003822 435 PCLHTLTVSGNHMGDENRSFRPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKL 514 (793)
Q Consensus 435 p~~~~l~~~g~~~~~~~~~~~V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~L 514 (793)
||...-...||-+. |+++.|+. |.++|++|+.|-++++|.++..+-.......+|.+.|.+.-|. .+...+
T Consensus 134 pFvl~r~~~g~fdd-------i~si~Ws~-DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~-~~~~~l 204 (893)
T KOG0291|consen 134 PFVLHRTYLGHFDD-------ITSIDWSD-DSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFG-ANSLDL 204 (893)
T ss_pred cceEeeeecCCccc-------eeEEEecc-CCceEEeccccceEEEEEeccccccceEeccCCCcceEEEEec-cCcceE
Confidence 66655555666653 89999999 9999999999999999999876666566666999999998886 777889
Q ss_pred EEEEcCCcEEEEEcCCCCCcc----------------------------ccc-----c----------cCCce-------
Q 003822 515 IAGSDNGSLKLYDIRHMPPSI----------------------------RGM-----H----------YGAGT------- 544 (793)
Q Consensus 515 asgs~DgtV~vWDl~~~~~~~----------------------------~~~-----~----------~~~~~------- 544 (793)
++.+.||.+.+|......... ... . .|...
T Consensus 205 ~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgF 284 (893)
T KOG0291|consen 205 YTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGF 284 (893)
T ss_pred EEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEe
Confidence 999999999999877211000 000 0 00000
Q ss_pred ----e---E-----ecC-----CCCeEEEEEccCCCEEEEEEC-CCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCC
Q 003822 545 ----V---T-----FDE-----FDQLTSVHVNSMDELFLASGY-SKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSP 606 (793)
Q Consensus 545 ----~---~-----~~~-----~~~V~sv~~s~~~~~lla~g~-Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~ 606 (793)
. . .-| ..+|..++|+..|+.++.++. =|.+-||+..+...+...+ +|...+++++++|||
T Consensus 285 ssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQ-gH~~~i~~l~YSpDg- 362 (893)
T KOG0291|consen 285 SSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQ-GHSDRITSLAYSPDG- 362 (893)
T ss_pred cCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeecc-ccccceeeEEECCCC-
Confidence 0 0 001 134666777777777777765 3788888888877777777 799999999999999
Q ss_pred cEEEEEeCCCeEEEEECCCCCccceEEccCCCCeEE-EEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCc
Q 003822 607 SIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVM-VCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQN 685 (793)
Q Consensus 607 ~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~~~~vs-v~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v 685 (793)
+++|||+.||.|+|||.+++- +..++..|...++ +.|+..|+.+++++-||+|+.||+..++..+++.. +...+.
T Consensus 363 q~iaTG~eDgKVKvWn~~Sgf--C~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~--P~p~Qf 438 (893)
T KOG0291|consen 363 QLIATGAEDGKVKVWNTQSGF--CFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTS--PEPIQF 438 (893)
T ss_pred cEEEeccCCCcEEEEeccCce--EEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecC--CCceee
Confidence 899999999999999999984 5566667766664 99999999999999999999999999999998864 233456
Q ss_pred EEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCCCCccceeeeccCCccccCCccEEEEEEcCCCCceeeE
Q 003822 686 YTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKSEIVK 765 (793)
Q Consensus 686 ~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~~~~iv~ 765 (793)
.+++..|.|. ++++|+.|.--|.||+++||+++. .|.||+ ++|.+++|+|. .+.++
T Consensus 439 scvavD~sGe-lV~AG~~d~F~IfvWS~qTGqllD--iLsGHE-------------------gPVs~l~f~~~-~~~La- 494 (893)
T KOG0291|consen 439 SCVAVDPSGE-LVCAGAQDSFEIFVWSVQTGQLLD--ILSGHE-------------------GPVSGLSFSPD-GSLLA- 494 (893)
T ss_pred eEEEEcCCCC-EEEeeccceEEEEEEEeecCeeee--hhcCCC-------------------CcceeeEEccc-cCeEE-
Confidence 6777888898 888999888656999999999999 777776 68999999995 45666
Q ss_pred eeEEEeCCCcEEEEcCC
Q 003822 766 VNLLASTDHCDKECSHG 782 (793)
Q Consensus 766 ~~ltaS~Dg~VkvW~~~ 782 (793)
+||.|.+||+|+.=
T Consensus 495 ---S~SWDkTVRiW~if 508 (893)
T KOG0291|consen 495 ---SGSWDKTVRIWDIF 508 (893)
T ss_pred ---eccccceEEEEEee
Confidence 89999999999963
No 33
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.8e-25 Score=229.01 Aligned_cols=286 Identities=18% Similarity=0.259 Sum_probs=235.7
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEc--CCcEEEEEcCCCCC
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSD--NGSLKLYDIRHMPP 533 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~--DgtV~vWDl~~~~~ 533 (793)
|.++.|++ +|..+++++.|.++++||..+++.+.++. .+.-.|..++|. ...+.++.++. |.+|+..++.+.+.
T Consensus 17 i~sl~fs~-~G~~litss~dDsl~LYd~~~g~~~~ti~--skkyG~~~~~Ft-h~~~~~i~sStk~d~tIryLsl~dNky 92 (311)
T KOG1446|consen 17 INSLDFSD-DGLLLITSSEDDSLRLYDSLSGKQVKTIN--SKKYGVDLACFT-HHSNTVIHSSTKEDDTIRYLSLHDNKY 92 (311)
T ss_pred eeEEEecC-CCCEEEEecCCCeEEEEEcCCCceeeEee--cccccccEEEEe-cCCceEEEccCCCCCceEEEEeecCce
Confidence 89999999 99999999999999999999999999887 555678888887 45556666665 88999999998665
Q ss_pred cccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEe
Q 003822 534 SIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSS 613 (793)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs 613 (793)
. +. ...|...|.+++.+|-++.+++++.|++|++||++..++...+.. ..-..++|.|.| -++|++.
T Consensus 93 l-RY--------F~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~---~~~pi~AfDp~G-LifA~~~ 159 (311)
T KOG1446|consen 93 L-RY--------FPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNL---SGRPIAAFDPEG-LIFALAN 159 (311)
T ss_pred E-EE--------cCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEec---CCCcceeECCCC-cEEEEec
Confidence 1 11 224557899999999999999999999999999998888777652 233458899999 8899888
Q ss_pred CCCeEEEEECCCCCccce--EEcc--CCCCeEEEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEE
Q 003822 614 FDQDVKLWDLRQKPIQPC--YTAS--SSKGNVMVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNYTRS 689 (793)
Q Consensus 614 ~Dg~IrIWDlrt~~~~~~--~~l~--~~~~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~a 689 (793)
....|++||+|.....|. +.+. ....+..+.|||||++|+.++..+.+++.|.-+|....++...+.........+
T Consensus 160 ~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ 239 (311)
T KOG1446|consen 160 GSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSAT 239 (311)
T ss_pred CCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEE
Confidence 888999999998543333 3332 223444699999999999999999999999999999999988777776678899
Q ss_pred EeeCCCeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCCCCccceeeeccCCccccCCccEEEEEEcCCCCceeeEeeEE
Q 003822 690 YYLNGRDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKSEIVKVNLL 769 (793)
Q Consensus 690 fspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~~~~iv~~~lt 769 (793)
|+||++ +|++|+.||+| .+|++++|+.+. .+.|.. .+++.++.|+|. ..+.
T Consensus 240 ftPds~-Fvl~gs~dg~i-~vw~~~tg~~v~--~~~~~~------------------~~~~~~~~fnP~-------~~mf 290 (311)
T KOG1446|consen 240 FTPDSK-FVLSGSDDGTI-HVWNLETGKKVA--VLRGPN------------------GGPVSCVRFNPR-------YAMF 290 (311)
T ss_pred ECCCCc-EEEEecCCCcE-EEEEcCCCcEee--EecCCC------------------CCCccccccCCc-------eeee
Confidence 999999 99999999999 999999999998 666632 246778889996 6668
Q ss_pred EeCCCcEEEEcCCCCCCC
Q 003822 770 ASTDHCDKECSHGQHSRP 787 (793)
Q Consensus 770 aS~Dg~VkvW~~~~~~~~ 787 (793)
++++..+-+|-+.....+
T Consensus 291 ~sa~s~l~fw~p~~~~~~ 308 (311)
T KOG1446|consen 291 VSASSNLVFWLPDEDALP 308 (311)
T ss_pred eecCceEEEEeccccccC
Confidence 899999999998866643
No 34
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.95 E-value=2.6e-26 Score=228.87 Aligned_cols=280 Identities=16% Similarity=0.194 Sum_probs=231.1
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcc
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSI 535 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~ 535 (793)
|.+++|+- +|..|++|+.|+++.||+++..+........+|.+.|-.++|.|+.++.|++++.|.+|++||++.+++..
T Consensus 23 v~Sv~wn~-~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~ 101 (313)
T KOG1407|consen 23 VHSVAWNC-DGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTA 101 (313)
T ss_pred ceEEEEcc-cCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEE
Confidence 78999999 99999999999999999999887777777779999999999999999999999999999999999987733
Q ss_pred cccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeCC
Q 003822 536 RGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFD 615 (793)
Q Consensus 536 ~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~D 615 (793)
... ....=.-+.|+|+++++++++.|..|.+.|.++.+.....+ ....++.+.|+.++ .+|+..+.-
T Consensus 102 ~i~----------~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~--~~~e~ne~~w~~~n-d~Fflt~Gl 168 (313)
T KOG1407|consen 102 RIE----------TKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ--FKFEVNEISWNNSN-DLFFLTNGL 168 (313)
T ss_pred Eee----------ccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhc--ccceeeeeeecCCC-CEEEEecCC
Confidence 222 22233457788999999999999999999999999888776 66788899999766 677666668
Q ss_pred CeEEEEECCCCCccceEEccCCCC-eEEEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCC
Q 003822 616 QDVKLWDLRQKPIQPCYTASSSKG-NVMVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNG 694 (793)
Q Consensus 616 g~IrIWDlrt~~~~~~~~l~~~~~-~vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg 694 (793)
|.|.|.....- +++..+..|.. -+++.|+|+|+++|+|+.|..+.+||+...-+++.+. ...-.|..++|+.+|
T Consensus 169 G~v~ILsypsL--kpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~is---RldwpVRTlSFS~dg 243 (313)
T KOG1407|consen 169 GCVEILSYPSL--KPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCIS---RLDWPVRTLSFSHDG 243 (313)
T ss_pred ceEEEEecccc--ccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeec---cccCceEEEEeccCc
Confidence 99999887754 66677776653 4579999999999999999999999999888877775 456788999999999
Q ss_pred CeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCCCCccceeeeccCCccccCCccEEEEEEcCCCCceeeEeeEEEe--C
Q 003822 695 RDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKSEIVKVNLLAS--T 772 (793)
Q Consensus 695 ~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~~~~iv~~~ltaS--~ 772 (793)
+ +||+||+|..| -|=+++||..+. .++. .++-..|+|||. +..++ |.++ .
T Consensus 244 ~-~lASaSEDh~I-DIA~vetGd~~~--eI~~--------------------~~~t~tVAWHPk-~~LLA---yA~ddk~ 295 (313)
T KOG1407|consen 244 R-MLASASEDHFI-DIAEVETGDRVW--EIPC--------------------EGPTFTVAWHPK-RPLLA---YACDDKD 295 (313)
T ss_pred c-eeeccCccceE-EeEecccCCeEE--Eeec--------------------cCCceeEEecCC-Cceee---EEecCCC
Confidence 9 99999999998 999999999998 3322 235678999995 44444 2332 2
Q ss_pred C------CcEEEEcCC
Q 003822 773 D------HCDKECSHG 782 (793)
Q Consensus 773 D------g~VkvW~~~ 782 (793)
+ |+||++-++
T Consensus 296 ~d~~reag~vKiFG~~ 311 (313)
T KOG1407|consen 296 GDSNREAGTVKIFGLS 311 (313)
T ss_pred CccccccceeEEecCC
Confidence 3 788887654
No 35
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=8.6e-27 Score=231.47 Aligned_cols=286 Identities=19% Similarity=0.262 Sum_probs=227.4
Q ss_pred EEEEEeCCCCCEEEEEe-------CCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcC
Q 003822 457 RQFEYHPSISCLMVFGT-------LDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIR 529 (793)
Q Consensus 457 ~~vafsP~d~~~Lasgs-------~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~ 529 (793)
+++.|+|--.++||.+. ..|.+.|.++..++-+.......-.+.+..++|++...+.+++++.||++++||..
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~ 91 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLT 91 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccC
Confidence 67899997777777654 36899999997555555555445678999999998888999999999999999965
Q ss_pred CCCCcccccccCCceeEecCCCCeEEEEEccCCCE-EEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcE
Q 003822 530 HMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDEL-FLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSI 608 (793)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~-lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~ 608 (793)
....++... ..|...|.++.|++..+. +++++.|++|++|+...++.+.++. ||...|...+|+|..+++
T Consensus 92 ~~s~Pi~~~--------kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~-gh~~~Iy~a~~sp~~~nl 162 (311)
T KOG0277|consen 92 MPSKPIHKF--------KEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFN-GHNSCIYQAAFSPHIPNL 162 (311)
T ss_pred CCCcchhHH--------HhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeec-CCccEEEEEecCCCCCCe
Confidence 543332222 245578999999887654 5555679999999999999999999 799999999999999999
Q ss_pred EEEEeCCCeEEEEECCCCCccceEEccCCC-CeEEEEEec-CCCEEEEEeCCCeEEEEEcCCCcE-EEEEeeecCCCCCc
Q 003822 609 FATSSFDQDVKLWDLRQKPIQPCYTASSSK-GNVMVCFSP-DDHYLLVSAVDNEVRQLLAVDGRV-HLNFGITATGSSQN 685 (793)
Q Consensus 609 LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~~-~~vsv~fSp-dg~~Lasgs~Dg~I~IwDl~tg~~-~~~l~~~~~~~~~v 685 (793)
++++|.|+++++||++....... ++.|. .+.++.|+. +...+++|+.|+.|++||+++-+. +..+ .+|.-.|
T Consensus 163 fas~Sgd~~l~lwdvr~~gk~~~--i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL---~gh~~AV 237 (311)
T KOG0277|consen 163 FASASGDGTLRLWDVRSPGKFMS--IEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFEL---NGHGLAV 237 (311)
T ss_pred EEEccCCceEEEEEecCCCceeE--EEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceee---cCCceEE
Confidence 99999999999999998632222 44555 667899997 667889999999999999998763 2333 4567788
Q ss_pred EEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCCCCccceeeeccCCccccCCccEEEEEEcCCCCceeeE
Q 003822 686 YTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKSEIVK 765 (793)
Q Consensus 686 ~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~~~~iv~ 765 (793)
..+.|+|.....|+|++.|-++ ||||...+.-.. +...-|..-|.++.|++..+..++
T Consensus 238 Rkvk~Sph~~~lLaSasYDmT~-riw~~~~~ds~~--------------------e~~~~HtEFv~g~Dws~~~~~~vA- 295 (311)
T KOG0277|consen 238 RKVKFSPHHASLLASASYDMTV-RIWDPERQDSAI--------------------ETVDHHTEFVCGLDWSLFDPGQVA- 295 (311)
T ss_pred EEEecCcchhhHhhhccccceE-Eecccccchhhh--------------------hhhhccceEEeccccccccCceee-
Confidence 9999999988899999999999 999988665433 122234456888889987777777
Q ss_pred eeEEEeCCCcEEEEcC
Q 003822 766 VNLLASTDHCDKECSH 781 (793)
Q Consensus 766 ~~ltaS~Dg~VkvW~~ 781 (793)
..+.|+.++||++
T Consensus 296 ---s~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 296 ---STGWDELLYVWNP 308 (311)
T ss_pred ---ecccccceeeecc
Confidence 8899999999986
No 36
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.95 E-value=3.9e-28 Score=249.12 Aligned_cols=276 Identities=17% Similarity=0.236 Sum_probs=219.5
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcc
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSI 535 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~ 535 (793)
|+|+.+.. ..+++|..|.+|+|||.++..+...+. ||++.|.|+.| +...+++|+.|.+|++||++++++..
T Consensus 200 VYClQYDD---~kiVSGlrDnTikiWD~n~~~c~~~L~--GHtGSVLCLqy---d~rviisGSSDsTvrvWDv~tge~l~ 271 (499)
T KOG0281|consen 200 VYCLQYDD---EKIVSGLRDNTIKIWDKNSLECLKILT--GHTGSVLCLQY---DERVIVSGSSDSTVRVWDVNTGEPLN 271 (499)
T ss_pred eEEEEecc---hhhhcccccCceEEeccccHHHHHhhh--cCCCcEEeeec---cceEEEecCCCceEEEEeccCCchhh
Confidence 89999965 789999999999999999888877766 99999999997 45699999999999999999988631
Q ss_pred cccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcE---EEEEcccCCCCeEEEEEcCCCCcEEEEE
Q 003822 536 RGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRR---LQVFADMHKEHINVVKFSNHSPSIFATS 612 (793)
Q Consensus 536 ~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~---l~~~~~gh~~~V~sv~fspdg~~~LaTg 612 (793)
..+.|...|..+.| .++++++++.|.++.+||+.+... .+.+. ||...|+.+.|+ . ++++++
T Consensus 272 ---------tlihHceaVLhlrf--~ng~mvtcSkDrsiaVWdm~sps~it~rrVLv-GHrAaVNvVdfd--~-kyIVsA 336 (499)
T KOG0281|consen 272 ---------TLIHHCEAVLHLRF--SNGYMVTCSKDRSIAVWDMASPTDITLRRVLV-GHRAAVNVVDFD--D-KYIVSA 336 (499)
T ss_pred ---------HHhhhcceeEEEEE--eCCEEEEecCCceeEEEeccCchHHHHHHHHh-hhhhheeeeccc--c-ceEEEe
Confidence 12345577899998 689999999999999999987542 23444 799999999996 3 699999
Q ss_pred eCCCeEEEEECCCCCccceEEccCCCCeEE-EEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEe
Q 003822 613 SFDQDVKLWDLRQKPIQPCYTASSSKGNVM-VCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYY 691 (793)
Q Consensus 613 s~Dg~IrIWDlrt~~~~~~~~l~~~~~~vs-v~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afs 691 (793)
+.|.+|++|++.+. ..+.++.+|...+. +.+ .|+++++|+.|++|++||+..|.+++.++ +|..-+..+.|.
T Consensus 337 SgDRTikvW~~st~--efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLe---GHEeLvRciRFd 409 (499)
T KOG0281|consen 337 SGDRTIKVWSTSTC--EFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLE---GHEELVRCIRFD 409 (499)
T ss_pred cCCceEEEEeccce--eeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHh---chHHhhhheeec
Confidence 99999999999987 45667777776553 444 69999999999999999999999988886 344455555553
Q ss_pred eCCCeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCCCCccceeeeccCCccccCCccEEEEEEcCCCCceeeEeeEEEe
Q 003822 692 LNGRDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKSEIVKVNLLAS 771 (793)
Q Consensus 692 pdg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~~~~iv~~~ltaS 771 (793)
.+ .|++|+.||+| +|||+.++..-+ ...+ .+.-..+..|.+.|..+.|..- +|+ ..|
T Consensus 410 --~k-rIVSGaYDGki-kvWdl~aaldpr--a~~~----------~~Cl~~lv~hsgRVFrLQFD~f---qIv----sss 466 (499)
T KOG0281|consen 410 --NK-RIVSGAYDGKI-KVWDLQAALDPR--APAS----------TLCLRTLVEHSGRVFRLQFDEF---QII----SSS 466 (499)
T ss_pred --Cc-eeeeccccceE-EEEecccccCCc--cccc----------chHHHhhhhccceeEEEeecce---EEE----ecc
Confidence 33 69999999999 999998876543 1111 1222233457778999999763 333 778
Q ss_pred CCCcEEEEcCCCC
Q 003822 772 TDHCDKECSHGQH 784 (793)
Q Consensus 772 ~Dg~VkvW~~~~~ 784 (793)
.|.+|-+|+....
T Consensus 467 HddtILiWdFl~~ 479 (499)
T KOG0281|consen 467 HDDTILIWDFLNG 479 (499)
T ss_pred CCCeEEEEEcCCC
Confidence 8999999997544
No 37
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.95 E-value=1.3e-26 Score=257.88 Aligned_cols=283 Identities=18% Similarity=0.212 Sum_probs=231.9
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcc
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSI 535 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~ 535 (793)
|..|.|-..+.++||.++..+.+++|+..+..+. .+. ||+..|.++... .+|.+|+||+.|.++++|.++.+....
T Consensus 326 I~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~--GH~e~vlSL~~~-~~g~llat~sKD~svilWr~~~~~~~~ 401 (775)
T KOG0319|consen 326 ILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIP--GHTEAVLSLDVW-SSGDLLATGSKDKSVILWRLNNNCSKS 401 (775)
T ss_pred heeeeecCCccceEEEEeCCCceEEEecCCCceE-EEe--Cchhheeeeeec-ccCcEEEEecCCceEEEEEecCCcchh
Confidence 6777776558899999999999999998876665 344 999999999932 467899999999999999996544322
Q ss_pred cccccCCceeEecCCCCeEEEEEccCC-CEEEEEECCCcEEEEECCCCcE---EEEE-----cccCCCCeEEEEEcCCCC
Q 003822 536 RGMHYGAGTVTFDEFDQLTSVHVNSMD-ELFLASGYSKNIALYDINSGRR---LQVF-----ADMHKEHINVVKFSNHSP 606 (793)
Q Consensus 536 ~~~~~~~~~~~~~~~~~V~sv~~s~~~-~~lla~g~Dg~I~IWDl~tg~~---l~~~-----~~gh~~~V~sv~fspdg~ 606 (793)
.... ..-.|...|.+++++..+ ..|++++.|+++++|++...+. ...+ ...|...|++|+++|+.
T Consensus 402 ~~~a-----~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~nd- 475 (775)
T KOG0319|consen 402 LCVA-----QANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPND- 475 (775)
T ss_pred hhhh-----hhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCC-
Confidence 1111 122455778889886555 4566667899999999986221 1111 12699999999999999
Q ss_pred cEEEEEeCCCeEEEEECCCCCccceEEccCCCCe-EEEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCc
Q 003822 607 SIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGN-VMVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQN 685 (793)
Q Consensus 607 ~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~~~~-vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v 685 (793)
.++||||.|.+.+||++... ....++.+|..- .++.|+|..+.++++|.|++|+||.+.+..++.+|+ +|...|
T Consensus 476 kLiAT~SqDktaKiW~le~~--~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~e---GH~~aV 550 (775)
T KOG0319|consen 476 KLIATGSQDKTAKIWDLEQL--RLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFE---GHTSAV 550 (775)
T ss_pred ceEEecccccceeeecccCc--eEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeec---Ccccee
Confidence 89999999999999999954 556677788654 479999999999999999999999999999999997 477889
Q ss_pred EEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCCCCccceeeeccCCccccCCccEEEEEEcCCCCceeeE
Q 003822 686 YTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKSEIVK 765 (793)
Q Consensus 686 ~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~~~~iv~ 765 (793)
..+.|..+|. .|+|++.||-+ ++|++++++++. ++.+|+ +.|++++.+|. ..+++
T Consensus 551 lra~F~~~~~-qliS~~adGli-KlWnikt~eC~~--tlD~H~-------------------DrvWaL~~~~~-~~~~~- 605 (775)
T KOG0319|consen 551 LRASFIRNGK-QLISAGADGLI-KLWNIKTNECEM--TLDAHN-------------------DRVWALSVSPL-LDMFV- 605 (775)
T ss_pred EeeeeeeCCc-EEEeccCCCcE-EEEeccchhhhh--hhhhcc-------------------ceeEEEeecCc-cceeE-
Confidence 9999999999 99999999999 999999999999 777766 57999999995 44667
Q ss_pred eeEEEeCCCcEEEEcC
Q 003822 766 VNLLASTDHCDKECSH 781 (793)
Q Consensus 766 ~~ltaS~Dg~VkvW~~ 781 (793)
+|++||.|-+|.-
T Consensus 606 ---tgg~Dg~i~~wkD 618 (775)
T KOG0319|consen 606 ---TGGGDGRIIFWKD 618 (775)
T ss_pred ---ecCCCeEEEEeec
Confidence 9999999999974
No 38
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.1e-26 Score=261.22 Aligned_cols=283 Identities=14% Similarity=0.213 Sum_probs=234.6
Q ss_pred cceEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCC
Q 003822 454 FRPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPP 533 (793)
Q Consensus 454 ~~V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~ 533 (793)
.+|..++||| ...+++++-..|.|++||.+-+.++..+. +|.++|.+++|+ +...+|++|+.|..|+||+..+.++
T Consensus 10 sRvKglsFHP-~rPwILtslHsG~IQlWDYRM~tli~rFd--eHdGpVRgv~FH-~~qplFVSGGDDykIkVWnYk~rrc 85 (1202)
T KOG0292|consen 10 SRVKGLSFHP-KRPWILTSLHSGVIQLWDYRMGTLIDRFD--EHDGPVRGVDFH-PTQPLFVSGGDDYKIKVWNYKTRRC 85 (1202)
T ss_pred ccccceecCC-CCCEEEEeecCceeeeehhhhhhHHhhhh--ccCCccceeeec-CCCCeEEecCCccEEEEEeccccee
Confidence 3588999999 88899999999999999999888888776 899999999998 6788999999999999999998776
Q ss_pred cccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEe
Q 003822 534 SIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSS 613 (793)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs 613 (793)
... ...|-+.|..+.||+.-+.++++++|.+|+||+..+++++..+. ||...|.|..|+|.. .+++++|
T Consensus 86 lft---------L~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavlt-GHnHYVMcAqFhptE-DlIVSaS 154 (1202)
T KOG0292|consen 86 LFT---------LLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLT-GHNHYVMCAQFHPTE-DLIVSAS 154 (1202)
T ss_pred hhh---------hccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEe-cCceEEEeeccCCcc-ceEEEec
Confidence 322 22455789999999999999999999999999999999999999 799999999999987 7999999
Q ss_pred CCCeEEEEECCCCC---------------------------ccceEEccCCCCeEE-EEEecCCCEEEEEeCCCeEEEEE
Q 003822 614 FDQDVKLWDLRQKP---------------------------IQPCYTASSSKGNVM-VCFSPDDHYLLVSAVDNEVRQLL 665 (793)
Q Consensus 614 ~Dg~IrIWDlrt~~---------------------------~~~~~~l~~~~~~vs-v~fSpdg~~Lasgs~Dg~I~IwD 665 (793)
-|.+|||||+..-+ ....+.+.||..-+. ++|+|.-..|++|+.|..|++|.
T Consensus 155 LDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWr 234 (1202)
T KOG0292|consen 155 LDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWR 234 (1202)
T ss_pred ccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEE
Confidence 99999999985310 011234556765554 99999999999999999999999
Q ss_pred cCCCcEEEEEeeecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCCCCccceeeeccCCcccc
Q 003822 666 AVDGRVHLNFGITATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPFRD 745 (793)
Q Consensus 666 l~tg~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~ 745 (793)
....+. ...+.-.+|-..|.++.|+|... +|+|.|.|+++ +|||+...+.++ ++...
T Consensus 235 mnetKa-WEvDtcrgH~nnVssvlfhp~q~-lIlSnsEDksi-rVwDm~kRt~v~--tfrre------------------ 291 (1202)
T KOG0292|consen 235 MNETKA-WEVDTCRGHYNNVSSVLFHPHQD-LILSNSEDKSI-RVWDMTKRTSVQ--TFRRE------------------ 291 (1202)
T ss_pred eccccc-eeehhhhcccCCcceEEecCccc-eeEecCCCccE-EEEeccccccee--eeecc------------------
Confidence 876553 23333446777888999999877 99999999999 999999888887 44322
Q ss_pred CCccEEEEEEcCCCCceeeEeeE-EEeCCCcEEEEcCC
Q 003822 746 FNMSILAAYTRPSSKSEIVKVNL-LASTDHCDKECSHG 782 (793)
Q Consensus 746 h~~~V~sva~~P~~~~~iv~~~l-taS~Dg~VkvW~~~ 782 (793)
++.-+.++-||. .++ .|+.|+.+.|+.++
T Consensus 292 -ndRFW~laahP~-------lNLfAAgHDsGm~VFkle 321 (1202)
T KOG0292|consen 292 -NDRFWILAAHPE-------LNLFAAGHDSGMIVFKLE 321 (1202)
T ss_pred -CCeEEEEEecCC-------cceeeeecCCceEEEEEc
Confidence 234667888886 333 35778888888775
No 39
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.95 E-value=6.5e-27 Score=231.55 Aligned_cols=283 Identities=15% Similarity=0.158 Sum_probs=239.6
Q ss_pred eEEEEEeC--CCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCC
Q 003822 456 PRQFEYHP--SISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPP 533 (793)
Q Consensus 456 V~~vafsP--~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~ 533 (793)
|..++|+| .+|-+|++++.||.-.+-+-++|..+.++. +|.+.|++.+.. .+...-++++.|-+-++||.-++..
T Consensus 17 vvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfe--ghkgavw~~~l~-~na~~aasaaadftakvw~a~tgde 93 (334)
T KOG0278|consen 17 VVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFE--GHKGAVWSATLN-KNATRAASAAADFTAKVWDAVTGDE 93 (334)
T ss_pred eeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeee--ccCcceeeeecC-chhhhhhhhcccchhhhhhhhhhhh
Confidence 78899987 378899999999999999999999999998 999999999864 5667788999999999999988764
Q ss_pred cccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCc-EEEEEcccCCCCeEEEEEcCCCCcEEEEE
Q 003822 534 SIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGR-RLQVFADMHKEHINVVKFSNHSPSIFATS 612 (793)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~-~l~~~~~gh~~~V~sv~fspdg~~~LaTg 612 (793)
...|.|..-|.+++|+.+..+++++|.+..++|||++..+ +...+. +|.+.|..+.|.... +.++++
T Consensus 94 ----------lhsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~-ghtg~Ir~v~wc~eD-~~iLSS 161 (334)
T KOG0278|consen 94 ----------LHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEIS-GHTGGIRTVLWCHED-KCILSS 161 (334)
T ss_pred ----------hhhhhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhc-CCCCcceeEEEeccC-ceEEee
Confidence 4467777889999999999999999999999999999754 566777 799999999999887 789999
Q ss_pred eCCCeEEEEECCCCCccceEEccCCCCeEEEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEee
Q 003822 613 SFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYL 692 (793)
Q Consensus 613 s~Dg~IrIWDlrt~~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afsp 692 (793)
+.|++||+||.+++... .++.....+.++.++++|++|.++. .+.|.+||..+-.++..++ ....+.+.+.+|
T Consensus 162 add~tVRLWD~rTgt~v--~sL~~~s~VtSlEvs~dG~ilTia~-gssV~Fwdaksf~~lKs~k----~P~nV~SASL~P 234 (334)
T KOG0278|consen 162 ADDKTVRLWDHRTGTEV--QSLEFNSPVTSLEVSQDGRILTIAY-GSSVKFWDAKSFGLLKSYK----MPCNVESASLHP 234 (334)
T ss_pred ccCCceEEEEeccCcEE--EEEecCCCCcceeeccCCCEEEEec-CceeEEeccccccceeecc----CccccccccccC
Confidence 99999999999999544 4444455677899999999876665 6789999999998888886 345677888999
Q ss_pred CCCeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCCCCccceeeeccCCccccCCccEEEEEEcCCCCceeeEeeEEEeC
Q 003822 693 NGRDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKSEIVKVNLLAST 772 (793)
Q Consensus 693 dg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~~~~iv~~~ltaS~ 772 (793)
+.. ++++|+.|+.+ +.||+.||+.+. .. .++|.++|.+|.|+|++ ..- .+||.
T Consensus 235 ~k~-~fVaGged~~~-~kfDy~TgeEi~--~~------------------nkgh~gpVhcVrFSPdG-E~y----AsGSE 287 (334)
T KOG0278|consen 235 KKE-FFVAGGEDFKV-YKFDYNTGEEIG--SY------------------NKGHFGPVHCVRFSPDG-ELY----ASGSE 287 (334)
T ss_pred CCc-eEEecCcceEE-EEEeccCCceee--ec------------------ccCCCCceEEEEECCCC-cee----eccCC
Confidence 987 99999999999 999999999987 21 14667899999999974 233 37899
Q ss_pred CCcEEEEcCCCCCCC
Q 003822 773 DHCDKECSHGQHSRP 787 (793)
Q Consensus 773 Dg~VkvW~~~~~~~~ 787 (793)
||+||+|...+...+
T Consensus 288 DGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 288 DGTIRLWQTTPGKTY 302 (334)
T ss_pred CceEEEEEecCCCch
Confidence 999999998766543
No 40
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.95 E-value=1.7e-27 Score=249.49 Aligned_cols=238 Identities=21% Similarity=0.289 Sum_probs=202.2
Q ss_pred ceEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCc
Q 003822 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS 534 (793)
Q Consensus 455 ~V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~ 534 (793)
.|+++.|++ ++.++++|+.+|.|++|+.+-.. +..+.. .|...|.+++|+ ++...|++++.||+|+|||....+..
T Consensus 140 ~Vr~m~ws~-~g~wmiSgD~gG~iKyWqpnmnn-Vk~~~a-hh~eaIRdlafS-pnDskF~t~SdDg~ikiWdf~~~kee 215 (464)
T KOG0284|consen 140 PVRTMKWSH-NGTWMISGDKGGMIKYWQPNMNN-VKIIQA-HHAEAIRDLAFS-PNDSKFLTCSDDGTIKIWDFRMPKEE 215 (464)
T ss_pred cceeEEEcc-CCCEEEEcCCCceEEecccchhh-hHHhhH-hhhhhhheeccC-CCCceeEEecCCCeEEEEeccCCchh
Confidence 499999999 99999999999999999976433 333331 455899999998 57789999999999999999875541
Q ss_pred ccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeC
Q 003822 535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSF 614 (793)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~ 614 (793)
.+.-.|...|.+++|+|..+.++++|.|..|++||.++|.++.++. +|+..|..+.|+|++ ++|+|+|.
T Consensus 216 ---------~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh-~HKntVl~~~f~~n~-N~Llt~sk 284 (464)
T KOG0284|consen 216 ---------RVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLH-GHKNTVLAVKFNPNG-NWLLTGSK 284 (464)
T ss_pred ---------heeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhh-hccceEEEEEEcCCC-CeeEEccC
Confidence 2223455779999999999999999999999999999999999999 699999999999999 99999999
Q ss_pred CCeEEEEECCCCCccceEEccCCCCeE-EEEEec-CCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEee
Q 003822 615 DQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSP-DDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYL 692 (793)
Q Consensus 615 Dg~IrIWDlrt~~~~~~~~l~~~~~~v-sv~fSp-dg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afsp 692 (793)
|..++++|+|+. ..++...+|...+ ++.|+| ....+.+|+.||.|..|.+...+.+..+ ...|...+++++|+|
T Consensus 285 D~~~kv~DiR~m--kEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i--~~AHd~~iwsl~~hP 360 (464)
T KOG0284|consen 285 DQSCKVFDIRTM--KELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEI--PPAHDGEIWSLAYHP 360 (464)
T ss_pred CceEEEEehhHh--HHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccccCC--Ccccccceeeeeccc
Confidence 999999999965 4556677776555 699999 5667788999999999998855554444 456778999999999
Q ss_pred CCCeEEEEEeCCCcEEEEEEc
Q 003822 693 NGRDYIVSGSCDEHVVRICCA 713 (793)
Q Consensus 693 dg~~~L~Sgs~Dg~II~IWDv 713 (793)
-|. +|++|+.|.++ ++|.-
T Consensus 361 lGh-il~tgsnd~t~-rfw~r 379 (464)
T KOG0284|consen 361 LGH-ILATGSNDRTV-RFWTR 379 (464)
T ss_pred cce-eEeecCCCcce-eeecc
Confidence 998 99999999999 99964
No 41
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.95 E-value=1.9e-25 Score=255.92 Aligned_cols=273 Identities=20% Similarity=0.288 Sum_probs=222.5
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEE-EeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCc
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSY-IPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS 534 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~-l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~ 534 (793)
+.+..|++ ..+++|+.+++|++|+..++..+.. +. ||.+.|+++++. ..++++++|+.|.++++||..++.+.
T Consensus 211 ~~~~q~~~---~~~~~~s~~~tl~~~~~~~~~~i~~~l~--GH~g~V~~l~~~-~~~~~lvsgS~D~t~rvWd~~sg~C~ 284 (537)
T KOG0274|consen 211 VLCLQLHD---GFFKSGSDDSTLHLWDLNNGYLILTRLV--GHFGGVWGLAFP-SGGDKLVSGSTDKTERVWDCSTGECT 284 (537)
T ss_pred hhhheeec---CeEEecCCCceeEEeecccceEEEeecc--CCCCCceeEEEe-cCCCEEEEEecCCcEEeEecCCCcEE
Confidence 78888885 7899999999999999999988776 55 999999999985 46889999999999999999998873
Q ss_pred ccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeC
Q 003822 535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSF 614 (793)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~ 614 (793)
. ....|.+.|.++.. ....+++|+.|.+|++|++.++..+..+. +|.++|+++..+ + .++++|+.
T Consensus 285 ~---------~l~gh~stv~~~~~--~~~~~~sgs~D~tVkVW~v~n~~~l~l~~-~h~~~V~~v~~~--~-~~lvsgs~ 349 (537)
T KOG0274|consen 285 H---------SLQGHTSSVRCLTI--DPFLLVSGSRDNTVKVWDVTNGACLNLLR-GHTGPVNCVQLD--E-PLLVSGSY 349 (537)
T ss_pred E---------EecCCCceEEEEEc--cCceEeeccCCceEEEEeccCcceEEEec-cccccEEEEEec--C-CEEEEEec
Confidence 1 12245566777775 55566666789999999999999999999 699999999997 4 69999999
Q ss_pred CCeEEEEECCCCCccceEEccCCCCeE-EEEEecCCCEEEEEeCCCeEEEEEcCCC-cEEEEEeeecCCCCCcEEEEEee
Q 003822 615 DQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLVSAVDNEVRQLLAVDG-RVHLNFGITATGSSQNYTRSYYL 692 (793)
Q Consensus 615 Dg~IrIWDlrt~~~~~~~~l~~~~~~v-sv~fSpdg~~Lasgs~Dg~I~IwDl~tg-~~~~~l~~~~~~~~~v~s~afsp 692 (793)
|++|++||++++ ..+..+.+|...+ ++.+.+. ..+++|+.|+.|++||+.+. +++.++.. +...+ .....
T Consensus 350 d~~v~VW~~~~~--~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~---h~~~v--~~l~~ 421 (537)
T KOG0274|consen 350 DGTVKVWDPRTG--KCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQG---HTSLV--SSLLL 421 (537)
T ss_pred CceEEEEEhhhc--eeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcC---Ccccc--ccccc
Confidence 999999999987 5567777888776 4666554 89999999999999999999 88888752 22222 33344
Q ss_pred CCCeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCCCCccceeeeccCCccccCCccEEEEEEcCCCCceeeEeeEEEeC
Q 003822 693 NGRDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKSEIVKVNLLAST 772 (793)
Q Consensus 693 dg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~~~~iv~~~ltaS~ 772 (793)
.+. +|++++.|+.| ++||..++++++ ++.++. ...|.+++.. ...++ .++.
T Consensus 422 ~~~-~Lvs~~aD~~I-k~WD~~~~~~~~--~~~~~~------------------~~~v~~l~~~---~~~il----~s~~ 472 (537)
T KOG0274|consen 422 RDN-FLVSSSADGTI-KLWDAEEGECLR--TLEGRH------------------VGGVSALALG---KEEIL----CSSD 472 (537)
T ss_pred ccc-eeEeccccccE-EEeecccCceee--eeccCC------------------cccEEEeecC---cceEE----EEec
Confidence 555 89999999999 999999999999 777731 2356666665 23344 8999
Q ss_pred CCcEEEEcCCCCCC
Q 003822 773 DHCDKECSHGQHSR 786 (793)
Q Consensus 773 Dg~VkvW~~~~~~~ 786 (793)
||++++|+++....
T Consensus 473 ~~~~~l~dl~~~~~ 486 (537)
T KOG0274|consen 473 DGSVKLWDLRSGTL 486 (537)
T ss_pred CCeeEEEecccCch
Confidence 99999999887763
No 42
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=9.7e-26 Score=221.67 Aligned_cols=278 Identities=16% Similarity=0.219 Sum_probs=223.5
Q ss_pred ceEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCc
Q 003822 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS 534 (793)
Q Consensus 455 ~V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~ 534 (793)
+|+++.|+- +|++.++++.|.+|++||...|.+++++. +|...|..++-+ .+...|++|+.|+.|.+||+++++..
T Consensus 19 aV~avryN~-dGnY~ltcGsdrtvrLWNp~rg~liktYs--ghG~EVlD~~~s-~Dnskf~s~GgDk~v~vwDV~TGkv~ 94 (307)
T KOG0316|consen 19 AVRAVRYNV-DGNYCLTCGSDRTVRLWNPLRGALIKTYS--GHGHEVLDAALS-SDNSKFASCGGDKAVQVWDVNTGKVD 94 (307)
T ss_pred ceEEEEEcc-CCCEEEEcCCCceEEeecccccceeeeec--CCCceeeecccc-ccccccccCCCCceEEEEEcccCeee
Confidence 389999999 99999999999999999999999999998 777889999975 68889999999999999999998752
Q ss_pred ccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCC--CcEEEEEcccCCCCeEEEEEcCCCCcEEEEE
Q 003822 535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINS--GRRLQVFADMHKEHINVVKFSNHSPSIFATS 612 (793)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~t--g~~l~~~~~gh~~~V~sv~fspdg~~~LaTg 612 (793)
+.+. .|..+|+.+.|+.....+++++.|.++++||.++ .++++.+.. ..+.|.+|..+. ..+++|
T Consensus 95 -Rr~r--------gH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQilde-a~D~V~Si~v~~---heIvaG 161 (307)
T KOG0316|consen 95 -RRFR--------GHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDE-AKDGVSSIDVAE---HEIVAG 161 (307)
T ss_pred -eecc--------cccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhh-hcCceeEEEecc---cEEEee
Confidence 2222 3447899999988888888888999999999986 568888884 788999999863 579999
Q ss_pred eCCCeEEEEECCCCCccceEEccCCCCeEEEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEee
Q 003822 613 SFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYL 692 (793)
Q Consensus 613 s~Dg~IrIWDlrt~~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afsp 692 (793)
+.||++|.||+|.+....-+ -..++.+++|++||+..++++.|+++++.|-.+|+++..++++.... .-..+++..
T Consensus 162 S~DGtvRtydiR~G~l~sDy---~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~e-ykldc~l~q 237 (307)
T KOG0316|consen 162 SVDGTVRTYDIRKGTLSSDY---FGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNME-YKLDCCLNQ 237 (307)
T ss_pred ccCCcEEEEEeecceeehhh---cCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccce-eeeeeeecc
Confidence 99999999999998433222 22356689999999999999999999999999999998887533221 233445555
Q ss_pred CCCeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCCCCccceeeeccCCccccCCc-cEEEEEEcCCCCceeeEeeEEEe
Q 003822 693 NGRDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNM-SILAAYTRPSSKSEIVKVNLLAS 771 (793)
Q Consensus 693 dg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~-~V~sva~~P~~~~~iv~~~ltaS 771 (793)
... .+++||+||.| ++||+..+..+. .+..+. . .|.++++||. ...++ +|+
T Consensus 238 sdt-hV~sgSEDG~V-y~wdLvd~~~~s--k~~~~~-------------------~v~v~dl~~hp~-~~~f~----~A~ 289 (307)
T KOG0316|consen 238 SDT-HVFSGSEDGKV-YFWDLVDETQIS--KLSVVS-------------------TVIVTDLSCHPT-MDDFI----TAT 289 (307)
T ss_pred cce-eEEeccCCceE-EEEEeccceeee--eeccCC-------------------ceeEEeeecccC-cccee----Eec
Confidence 555 89999999999 999999998887 554443 2 3789999996 33333 444
Q ss_pred CCCcEEEEcCC
Q 003822 772 TDHCDKECSHG 782 (793)
Q Consensus 772 ~Dg~VkvW~~~ 782 (793)
++.+-.|...
T Consensus 290 -~~~~~~~~~~ 299 (307)
T KOG0316|consen 290 -GHGDLFWYQE 299 (307)
T ss_pred -CCceeceeeh
Confidence 4444677643
No 43
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.94 E-value=1.2e-24 Score=234.25 Aligned_cols=294 Identities=14% Similarity=0.170 Sum_probs=234.2
Q ss_pred cceEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCC
Q 003822 454 FRPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPP 533 (793)
Q Consensus 454 ~~V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~ 533 (793)
.+|.+++|-|..+-++++|++|++|.+|+-..-+...++. .|..-|.++.|+ |+|.+|++++.||+|.+||-.+++.
T Consensus 148 r~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r--~HskFV~~VRys-PDG~~Fat~gsDgki~iyDGktge~ 224 (603)
T KOG0318|consen 148 RRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFR--EHSKFVNCVRYS-PDGSRFATAGSDGKIYIYDGKTGEK 224 (603)
T ss_pred eeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeeccc--ccccceeeEEEC-CCCCeEEEecCCccEEEEcCCCccE
Confidence 4599999999888899999999999999866555555554 899999999998 7899999999999999999998876
Q ss_pred cccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEE-------------------------
Q 003822 534 SIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVF------------------------- 588 (793)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~------------------------- 588 (793)
.-. +.. .-.|.+.|.+++|+|++.++++++.|.+++|||+.+.+.++++
T Consensus 225 vg~-l~~-----~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl 298 (603)
T KOG0318|consen 225 VGE-LED-----SDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSL 298 (603)
T ss_pred EEE-ecC-----CCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEc
Confidence 221 110 2356788999999999999999999999999999987665533
Q ss_pred -----------------cccCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEECCCCCccce--------------------
Q 003822 589 -----------------ADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPC-------------------- 631 (793)
Q Consensus 589 -----------------~~gh~~~V~sv~fspdg~~~LaTgs~Dg~IrIWDlrt~~~~~~-------------------- 631 (793)
..||...|+++..+|++ .+|++|+.||.|.-||..++..-++
T Consensus 299 ~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~-~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~ 377 (603)
T KOG0318|consen 299 SGTINYLNPSDPSVLKVISGHNKSITALTVSPDG-KTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGEL 377 (603)
T ss_pred CcEEEEecccCCChhheecccccceeEEEEcCCC-CEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcE
Confidence 12699999999999999 8999999999999999865421111
Q ss_pred EE---------------------------------------------------ccCCCC---------eEEEEEecCCCE
Q 003822 632 YT---------------------------------------------------ASSSKG---------NVMVCFSPDDHY 651 (793)
Q Consensus 632 ~~---------------------------------------------------l~~~~~---------~vsv~fSpdg~~ 651 (793)
++ +..... +.+++++|++..
T Consensus 378 ~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~ 457 (603)
T KOG0318|consen 378 FTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSE 457 (603)
T ss_pred EEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCE
Confidence 00 000000 114788999999
Q ss_pred EEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCCCCc
Q 003822 652 LLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKGSGT 731 (793)
Q Consensus 652 Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~~~~ 731 (793)
+++|+.|+.|+||.+..+.+... .....+...+..++|+||+. ||++|...+.+ -+||+.+.+...
T Consensus 458 vaVGG~Dgkvhvysl~g~~l~ee-~~~~~h~a~iT~vaySpd~~-yla~~Da~rkv-v~yd~~s~~~~~----------- 523 (603)
T KOG0318|consen 458 VAVGGQDGKVHVYSLSGDELKEE-AKLLEHRAAITDVAYSPDGA-YLAAGDASRKV-VLYDVASREVKT----------- 523 (603)
T ss_pred EEEecccceEEEEEecCCcccce-eeeecccCCceEEEECCCCc-EEEEeccCCcE-EEEEcccCceec-----------
Confidence 99999999999999987665332 22335778899999999999 99999999999 999999887632
Q ss_pred cceeeeccCCccccCCccEEEEEEcCCCCceeeEeeEEEeCCCcEEEEcCCCCC
Q 003822 732 SMFVQSLRGDPFRDFNMSILAAYTRPSSKSEIVKVNLLASTDHCDKECSHGQHS 785 (793)
Q Consensus 732 s~~v~sl~g~~~~~h~~~V~sva~~P~~~~~iv~~~ltaS~Dg~VkvW~~~~~~ 785 (793)
....=|...|++++|+|+ ...++ +||-|-.|.||+...+.
T Consensus 524 ---------~~w~FHtakI~~~aWsP~-n~~vA----TGSlDt~Viiysv~kP~ 563 (603)
T KOG0318|consen 524 ---------NRWAFHTAKINCVAWSPN-NKLVA----TGSLDTNVIIYSVKKPA 563 (603)
T ss_pred ---------ceeeeeeeeEEEEEeCCC-ceEEE----eccccceEEEEEccChh
Confidence 111225568999999995 44666 89999999999987765
No 44
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.94 E-value=3.3e-26 Score=254.69 Aligned_cols=258 Identities=17% Similarity=0.203 Sum_probs=214.6
Q ss_pred ccCCCCCCCCcccceEEEEEeCCCCCEEEEEeCCCeEEEEECCCCe--EEEEEeccCCCCCEEEEEEeeCCCCEEEEEEc
Q 003822 442 VSGNHMGDENRSFRPRQFEYHPSISCLMVFGTLDGEIVVVNHENEN--IVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSD 519 (793)
Q Consensus 442 ~~g~~~~~~~~~~~V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~--~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~ 519 (793)
+.||.+. |.+++... +|.+|++|+.|.++++|.++++. ....-...+|++.|.+++++.....+|+++|.
T Consensus 361 i~GH~e~-------vlSL~~~~-~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~ 432 (775)
T KOG0319|consen 361 IPGHTEA-------VLSLDVWS-SGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQ 432 (775)
T ss_pred EeCchhh-------eeeeeecc-cCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecC
Confidence 4677764 77777444 56899999999999999885443 22223345999999999997656689999999
Q ss_pred CCcEEEEEcCCCCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEE
Q 003822 520 NGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVV 599 (793)
Q Consensus 520 DgtV~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv 599 (793)
|+++++|++...+.......-........|...|++++++|++..+++++.|++.+||+++.+..+.++. ||+..|++|
T Consensus 433 D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLs-GH~RGvw~V 511 (775)
T KOG0319|consen 433 DCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLS-GHTRGVWCV 511 (775)
T ss_pred CceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEee-CCccceEEE
Confidence 9999999998733311111100111223567889999999999999999999999999999999999999 799999999
Q ss_pred EEcCCCCcEEEEEeCCCeEEEEECCCCCccceEEccCCCCeE-EEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeee
Q 003822 600 KFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGIT 678 (793)
Q Consensus 600 ~fspdg~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~~~~v-sv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~ 678 (793)
.|+|.+ +.++|+|.|++|+||.+.+. .++.++.||...+ .+.|-.+|+.|++++.||.+++|++.++.++.++.
T Consensus 512 ~Fs~~d-q~laT~SgD~TvKIW~is~f--SClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD-- 586 (775)
T KOG0319|consen 512 SFSKND-QLLATCSGDKTVKIWSISTF--SCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLD-- 586 (775)
T ss_pred Eecccc-ceeEeccCCceEEEEEeccc--eeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhh--
Confidence 999998 89999999999999999998 5567778888776 59999999999999999999999999999999997
Q ss_pred cCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCC
Q 003822 679 ATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTG 716 (793)
Q Consensus 679 ~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg 716 (793)
.|...++.++.++.+. +++||+.||.+ .+|.=.|.
T Consensus 587 -~H~DrvWaL~~~~~~~-~~~tgg~Dg~i-~~wkD~Te 621 (775)
T KOG0319|consen 587 -AHNDRVWALSVSPLLD-MFVTGGGDGRI-IFWKDVTE 621 (775)
T ss_pred -hccceeEEEeecCccc-eeEecCCCeEE-EEeecCcH
Confidence 5788999999999998 99999999999 99965543
No 45
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.94 E-value=1.3e-25 Score=227.85 Aligned_cols=289 Identities=19% Similarity=0.276 Sum_probs=224.9
Q ss_pred ceEEEEEeCCCCCEEEEEeCCCeEEEEECCC------------C------eEEEEEeccCCCCCEEEEEEeeCCCCEEEE
Q 003822 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHEN------------E------NIVSYIPSFGAMNSVLGLCWLKKYPSKLIA 516 (793)
Q Consensus 455 ~V~~vafsP~d~~~Lasgs~DG~I~VWd~~t------------~------~~i~~l~~~~h~~~V~sv~fs~~~g~~Las 516 (793)
.+++-+|+| ||.++|+|+.|-.|+|.|++. + -.+++ +..|.+.|+++.|+ |....|++
T Consensus 114 ~cR~aafs~-DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRT--lYDH~devn~l~FH-Pre~ILiS 189 (430)
T KOG0640|consen 114 PCRAAAFSP-DGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRT--LYDHVDEVNDLDFH-PRETILIS 189 (430)
T ss_pred ceeeeeeCC-CCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEee--hhhccCcccceeec-chhheEEe
Confidence 378999999 999999999999999999861 1 12333 34899999999998 67889999
Q ss_pred EEcCCcEEEEEcCCCCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEc--ccCCC
Q 003822 517 GSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFA--DMHKE 594 (793)
Q Consensus 517 gs~DgtV~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~--~gh~~ 594 (793)
|+.|++|+++|+.+.... .....+....+|.++.|+|.+.++++|....++++||+++.++...-. ..|++
T Consensus 190 ~srD~tvKlFDfsK~saK-------rA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ 262 (430)
T KOG0640|consen 190 GSRDNTVKLFDFSKTSAK-------RAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTG 262 (430)
T ss_pred ccCCCeEEEEecccHHHH-------HHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCccccccc
Confidence 999999999999864321 011234455789999999999999999999999999999988765443 36999
Q ss_pred CeEEEEEcCCCCcEEEEEeCCCeEEEEECCCCCccceEEc-cCCCCeEEEEEecCCCEEEEEeCCCeEEEEEcCCCcEEE
Q 003822 595 HINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTA-SSSKGNVMVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHL 673 (793)
Q Consensus 595 ~V~sv~fspdg~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l-~~~~~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~ 673 (793)
.|++|.+++.+ ++.+||+.||.|++||--++++...+.- ++...+.+..|..+|+|+++.+.|..+++|.+.+|+++.
T Consensus 263 ai~~V~Ys~t~-~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~ 341 (430)
T KOG0640|consen 263 AITQVRYSSTG-SLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLK 341 (430)
T ss_pred ceeEEEecCCc-cEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEE
Confidence 99999999999 8999999999999999888766544432 333344469999999999999999999999999999999
Q ss_pred EEeeecCCCC--CcEEEEEeeCCCeEEEEEeCC-CcEEEEEEcCCCcEEEeeeecCCCCCccceeeeccCCccccCCccE
Q 003822 674 NFGITATGSS--QNYTRSYYLNGRDYIVSGSCD-EHVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSI 750 (793)
Q Consensus 674 ~l~~~~~~~~--~v~s~afspdg~~~L~Sgs~D-g~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V 750 (793)
.+.+...... ......|..... |++.-.+- +.+ .-||.+++.++. .+ -.+|++.|
T Consensus 342 ~YtGAg~tgrq~~rtqAvFNhtEd-yVl~pDEas~sl-csWdaRtadr~~--l~------------------slgHn~a~ 399 (430)
T KOG0640|consen 342 EYTGAGTTGRQKHRTQAVFNHTED-YVLFPDEASNSL-CSWDARTADRVA--LL------------------SLGHNGAV 399 (430)
T ss_pred EEecCCcccchhhhhhhhhcCccc-eEEccccccCce-eeccccchhhhh--hc------------------ccCCCCCc
Confidence 9875322111 122344555555 77665443 455 999999998876 11 12566789
Q ss_pred EEEEEcCCCCceeeEeeEEEeCCCcEEEEcCC
Q 003822 751 LAAYTRPSSKSEIVKVNLLASTDHCDKECSHG 782 (793)
Q Consensus 751 ~sva~~P~~~~~iv~~~ltaS~Dg~VkvW~~~ 782 (793)
..+..+|. ...++ ++|.|..+|+|...
T Consensus 400 R~i~HSP~-~p~Fm----TcsdD~raRFWyrr 426 (430)
T KOG0640|consen 400 RWIVHSPV-EPAFM----TCSDDFRARFWYRR 426 (430)
T ss_pred eEEEeCCC-CCcee----eecccceeeeeeec
Confidence 99999995 34444 99999999999864
No 46
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.94 E-value=1.5e-24 Score=264.70 Aligned_cols=242 Identities=19% Similarity=0.245 Sum_probs=198.6
Q ss_pred ceEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCc
Q 003822 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS 534 (793)
Q Consensus 455 ~V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~ 534 (793)
.+.+++|+|..+.+|++|+.||+|++||+.+++.+..+. +|.+.|++++|+|.++.+|++|+.||+|++||++++..
T Consensus 534 ~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~--~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~- 610 (793)
T PLN00181 534 KLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMK--EHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVS- 610 (793)
T ss_pred ceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEec--CCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcE-
Confidence 378999998678899999999999999999998887776 89999999999877889999999999999999987653
Q ss_pred ccccccCCceeEecCCCCeEEEEEccC-CCEEEEEECCCcEEEEECCCCc-EEEEEcccCCCCeEEEEEcCCCCcEEEEE
Q 003822 535 IRGMHYGAGTVTFDEFDQLTSVHVNSM-DELFLASGYSKNIALYDINSGR-RLQVFADMHKEHINVVKFSNHSPSIFATS 612 (793)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~V~sv~~s~~-~~~lla~g~Dg~I~IWDl~tg~-~l~~~~~gh~~~V~sv~fspdg~~~LaTg 612 (793)
...+.+...|.++.|+++ +..+++++.||.|++||+++++ ++..+. +|...|.++.|. ++ ..++++
T Consensus 611 ---------~~~~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~-~h~~~V~~v~f~-~~-~~lvs~ 678 (793)
T PLN00181 611 ---------IGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMI-GHSKTVSYVRFV-DS-STLVSS 678 (793)
T ss_pred ---------EEEEecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEec-CCCCCEEEEEEe-CC-CEEEEE
Confidence 122334467899999654 6677777889999999999866 566776 699999999997 45 689999
Q ss_pred eCCCeEEEEECCCCC----ccceEEccCCCCeE-EEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeee---------
Q 003822 613 SFDQDVKLWDLRQKP----IQPCYTASSSKGNV-MVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGIT--------- 678 (793)
Q Consensus 613 s~Dg~IrIWDlrt~~----~~~~~~l~~~~~~v-sv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~--------- 678 (793)
+.|++|++||++... ..++..+.+|...+ .++|+|++.+|++|+.|+.|++|+...+..+..+...
T Consensus 679 s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~ 758 (793)
T PLN00181 679 STDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLE 758 (793)
T ss_pred ECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccc
Confidence 999999999998531 23456677777665 4999999999999999999999998776554333211
Q ss_pred -cCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEc
Q 003822 679 -ATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCA 713 (793)
Q Consensus 679 -~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv 713 (793)
..+...+..++|+|++. +|++|+.||.| +||++
T Consensus 759 ~~~~~~~V~~v~ws~~~~-~lva~~~dG~I-~i~~~ 792 (793)
T PLN00181 759 VDDASQFISSVCWRGQSS-TLVAANSTGNI-KILEM 792 (793)
T ss_pred cCCCCcEEEEEEEcCCCC-eEEEecCCCcE-EEEec
Confidence 12234588899999998 99999999999 99986
No 47
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.94 E-value=1.2e-24 Score=217.47 Aligned_cols=294 Identities=15% Similarity=0.117 Sum_probs=228.8
Q ss_pred ceEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCc
Q 003822 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS 534 (793)
Q Consensus 455 ~V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~ 534 (793)
.++.+.|+. +|.+|.+++.|.++.||-..+|+.+.++. ||++.|++++.. .+.+.+++|+.|.++++||+++++.
T Consensus 12 plTqiKyN~-eGDLlFscaKD~~~~vw~s~nGerlGty~--GHtGavW~~Did-~~s~~liTGSAD~t~kLWDv~tGk~- 86 (327)
T KOG0643|consen 12 PLTQIKYNR-EGDLLFSCAKDSTPTVWYSLNGERLGTYD--GHTGAVWCCDID-WDSKHLITGSADQTAKLWDVETGKQ- 86 (327)
T ss_pred ccceEEecC-CCcEEEEecCCCCceEEEecCCceeeeec--CCCceEEEEEec-CCcceeeeccccceeEEEEcCCCcE-
Confidence 389999999 99999999999999999998999999988 999999999975 6788999999999999999999886
Q ss_pred ccccccCCceeEecCCCCeEEEEEccCCCEEEEEEC-----CCcEEEEECC-------CCcEEEEEcccCCCCeEEEEEc
Q 003822 535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY-----SKNIALYDIN-------SGRRLQVFADMHKEHINVVKFS 602 (793)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~-----Dg~I~IWDl~-------tg~~l~~~~~gh~~~V~sv~fs 602 (793)
...+....+|..+.|+..+++++++.. .+.|.++|++ ...+...+. .+...++.+-|.
T Consensus 87 ---------la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~-t~~skit~a~Wg 156 (327)
T KOG0643|consen 87 ---------LATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIP-TPDSKITSALWG 156 (327)
T ss_pred ---------EEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEec-CCccceeeeeec
Confidence 445666788999999988888888763 4779999998 445677777 588999999999
Q ss_pred CCCCcEEEEEeCCCeEEEEECCCCCccceEEccCCCCeE-EEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCC
Q 003822 603 NHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATG 681 (793)
Q Consensus 603 pdg~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~~~~v-sv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~ 681 (793)
|-+ ..+++|..||.|.+||++++... +.....|...+ .++++||..++++++.|.+-++||..+-..+.++. .
T Consensus 157 ~l~-~~ii~Ghe~G~is~~da~~g~~~-v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~----t 230 (327)
T KOG0643|consen 157 PLG-ETIIAGHEDGSISIYDARTGKEL-VDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYT----T 230 (327)
T ss_pred ccC-CEEEEecCCCcEEEEEcccCcee-eechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEee----e
Confidence 999 89999999999999999997422 22333344444 59999999999999999999999999999998886 4
Q ss_pred CCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCC-CcEEEeeeecCCCCCccceeeeccCCccccCCccEEEEEEcCCCC
Q 003822 682 SSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQT-GRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSK 760 (793)
Q Consensus 682 ~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~t-g~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~~ 760 (793)
..++.+.+++|... .++.|+..... |+.| ..... .++..- -+..+.. .-...++|-++|+++++||++.
T Consensus 231 e~PvN~aaisP~~d-~VilgGGqeA~----dVTTT~~r~G--KFEArF-yh~i~eE--EigrvkGHFGPINsvAfhPdGk 300 (327)
T KOG0643|consen 231 ERPVNTAAISPLLD-HVILGGGQEAM----DVTTTSTRAG--KFEARF-YHLIFEE--EIGRVKGHFGPINSVAFHPDGK 300 (327)
T ss_pred cccccceecccccc-eEEecCCceee----eeeeeccccc--chhhhH-HHHHHHH--HhccccccccCcceeEECCCCc
Confidence 56788899999877 55554433222 2211 11111 111110 0011111 2235568889999999999752
Q ss_pred ceeeEeeEEEeCCCcEEEEcCCCC
Q 003822 761 SEIVKVNLLASTDHCDKECSHGQH 784 (793)
Q Consensus 761 ~~iv~~~ltaS~Dg~VkvW~~~~~ 784 (793)
...+|+.||.||+...++.
T Consensus 301 -----sYsSGGEDG~VR~h~Fd~~ 319 (327)
T KOG0643|consen 301 -----SYSSGGEDGYVRLHHFDSN 319 (327)
T ss_pred -----ccccCCCCceEEEEEeccc
Confidence 3337899999999887654
No 48
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.94 E-value=1.4e-25 Score=231.50 Aligned_cols=241 Identities=15% Similarity=0.224 Sum_probs=207.9
Q ss_pred CCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcccccccCCceeEe-cCCCCeEEEEEccCCCEEEEEECCCcE
Q 003822 496 GAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTF-DEFDQLTSVHVNSMDELFLASGYSKNI 574 (793)
Q Consensus 496 ~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~~~~~~~~~~~~~-~~~~~V~sv~~s~~~~~lla~g~Dg~I 574 (793)
+|.+.|.++++- |...+|++|+.|++|+|||+.+++... +. .|...|..+++++...++++++.|+.|
T Consensus 149 gHlgWVr~vavd-P~n~wf~tgs~DrtikIwDlatg~Lkl----------tltGhi~~vr~vavS~rHpYlFs~gedk~V 217 (460)
T KOG0285|consen 149 GHLGWVRSVAVD-PGNEWFATGSADRTIKIWDLATGQLKL----------TLTGHIETVRGVAVSKRHPYLFSAGEDKQV 217 (460)
T ss_pred hccceEEEEeeC-CCceeEEecCCCceeEEEEcccCeEEE----------eecchhheeeeeeecccCceEEEecCCCee
Confidence 899999999986 678899999999999999999987622 22 245778999999999999999999999
Q ss_pred EEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEECCCCCccceEEccCCCCeEE-EEEecCCCEEE
Q 003822 575 ALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVM-VCFSPDDHYLL 653 (793)
Q Consensus 575 ~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~~~~vs-v~fSpdg~~La 653 (793)
+.||++..+.++.+. ||-..|.+++.+|.- ..|+||+.|.++||||+|+. ..+..+.+|...+. +.+.|-...++
T Consensus 218 KCwDLe~nkvIR~Yh-GHlS~V~~L~lhPTl-dvl~t~grDst~RvWDiRtr--~~V~~l~GH~~~V~~V~~~~~dpqvi 293 (460)
T KOG0285|consen 218 KCWDLEYNKVIRHYH-GHLSGVYCLDLHPTL-DVLVTGGRDSTIRVWDIRTR--ASVHVLSGHTNPVASVMCQPTDPQVI 293 (460)
T ss_pred EEEechhhhhHHHhc-cccceeEEEeccccc-eeEEecCCcceEEEeeeccc--ceEEEecCCCCcceeEEeecCCCceE
Confidence 999999999999998 799999999999998 89999999999999999998 67888999988875 88999888899
Q ss_pred EEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCCCCccc
Q 003822 654 VSAVDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKGSGTSM 733 (793)
Q Consensus 654 sgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~ 733 (793)
+|+.|++|++||+..|+...++. .+...+..++.+|... .+++++.| .+ +-|++..|..+. .+.||+
T Consensus 294 t~S~D~tvrlWDl~agkt~~tlt---~hkksvral~lhP~e~-~fASas~d-ni-k~w~~p~g~f~~--nlsgh~----- 360 (460)
T KOG0285|consen 294 TGSHDSTVRLWDLRAGKTMITLT---HHKKSVRALCLHPKEN-LFASASPD-NI-KQWKLPEGEFLQ--NLSGHN----- 360 (460)
T ss_pred EecCCceEEEeeeccCceeEeee---cccceeeEEecCCchh-hhhccCCc-cc-eeccCCccchhh--cccccc-----
Confidence 99999999999999999877775 4666788888899887 88888887 56 999999999888 455554
Q ss_pred eeeeccCCccccCCccEEEEEEcCCCCceeeEeeEEEeCCCcEEEEcCCCC
Q 003822 734 FVQSLRGDPFRDFNMSILAAYTRPSSKSEIVKVNLLASTDHCDKECSHGQH 784 (793)
Q Consensus 734 ~v~sl~g~~~~~h~~~V~sva~~P~~~~~iv~~~ltaS~Dg~VkvW~~~~~ 784 (793)
..|++++-..++ ..++|+..|.+.+|+....
T Consensus 361 --------------~iintl~~nsD~------v~~~G~dng~~~fwdwksg 391 (460)
T KOG0285|consen 361 --------------AIINTLSVNSDG------VLVSGGDNGSIMFWDWKSG 391 (460)
T ss_pred --------------ceeeeeeeccCc------eEEEcCCceEEEEEecCcC
Confidence 567788777763 3347888899999986544
No 49
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=4.4e-25 Score=241.12 Aligned_cols=246 Identities=18% Similarity=0.272 Sum_probs=210.7
Q ss_pred CCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcccccccCCceeEec-CCCCeEEEEEccCCCEEEEEECCCcE
Q 003822 496 GAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFD-EFDQLTSVHVNSMDELFLASGYSKNI 574 (793)
Q Consensus 496 ~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~~~~~~~~~~~~~~-~~~~V~sv~~s~~~~~lla~g~Dg~I 574 (793)
.++..|.++.++ |...+++++-..|.|.|||.++.... ..+. ...+|.+..|-+..+.+++|++|..|
T Consensus 11 ~rSdRVKsVd~H-PtePw~la~LynG~V~IWnyetqtmV----------ksfeV~~~PvRa~kfiaRknWiv~GsDD~~I 79 (794)
T KOG0276|consen 11 SRSDRVKSVDFH-PTEPWILAALYNGDVQIWNYETQTMV----------KSFEVSEVPVRAAKFIARKNWIVTGSDDMQI 79 (794)
T ss_pred ccCCceeeeecC-CCCceEEEeeecCeeEEEecccceee----------eeeeecccchhhheeeeccceEEEecCCceE
Confidence 578899999999 56678888899999999999986541 1121 22578888888899999999999999
Q ss_pred EEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEECCCCCccceEEccCCCCeEE-EEEec-CCCEE
Q 003822 575 ALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVM-VCFSP-DDHYL 652 (793)
Q Consensus 575 ~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~~~~vs-v~fSp-dg~~L 652 (793)
+||+.++++.++.|. +|.+.|++++.||.. -+++|+|.|-+|++||.... ..+..++.+|...+. ++|.| |.+.+
T Consensus 80 rVfnynt~ekV~~Fe-AH~DyIR~iavHPt~-P~vLtsSDDm~iKlW~we~~-wa~~qtfeGH~HyVMqv~fnPkD~ntF 156 (794)
T KOG0276|consen 80 RVFNYNTGEKVKTFE-AHSDYIRSIAVHPTL-PYVLTSSDDMTIKLWDWENE-WACEQTFEGHEHYVMQVAFNPKDPNTF 156 (794)
T ss_pred EEEecccceeeEEee-ccccceeeeeecCCC-CeEEecCCccEEEEeeccCc-eeeeeEEcCcceEEEEEEecCCCccce
Confidence 999999999999999 799999999999999 58999999999999999874 456677788888775 99999 67899
Q ss_pred EEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCC-CeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCCCCc
Q 003822 653 LVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNG-RDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKGSGT 731 (793)
Q Consensus 653 asgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg-~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~~~~ 731 (793)
|+++-|++|+||.+.+..+..+++ +|...+..+.|.+.| ++|++||++|.++ +|||.+|..+++ +|+||.
T Consensus 157 aS~sLDrTVKVWslgs~~~nfTl~---gHekGVN~Vdyy~~gdkpylIsgaDD~ti-KvWDyQtk~CV~--TLeGHt--- 227 (794)
T KOG0276|consen 157 ASASLDRTVKVWSLGSPHPNFTLE---GHEKGVNCVDYYTGGDKPYLISGADDLTI-KVWDYQTKSCVQ--TLEGHT--- 227 (794)
T ss_pred eeeeccccEEEEEcCCCCCceeee---ccccCcceEEeccCCCcceEEecCCCceE-EEeecchHHHHH--Hhhccc---
Confidence 999999999999999988888887 466778889888754 5699999999999 999999999999 999987
Q ss_pred cceeeeccCCccccCCccEEEEEEcCCCCceeeEeeEEEeCCCcEEEEcCCCCC
Q 003822 732 SMFVQSLRGDPFRDFNMSILAAYTRPSSKSEIVKVNLLASTDHCDKECSHGQHS 785 (793)
Q Consensus 732 s~~v~sl~g~~~~~h~~~V~sva~~P~~~~~iv~~~ltaS~Dg~VkvW~~~~~~ 785 (793)
..|..+.|||. -..|+ +||.||+||+|+.....
T Consensus 228 ----------------~Nvs~v~fhp~-lpiii----sgsEDGTvriWhs~Ty~ 260 (794)
T KOG0276|consen 228 ----------------NNVSFVFFHPE-LPIII----SGSEDGTVRIWNSKTYK 260 (794)
T ss_pred ----------------ccceEEEecCC-CcEEE----EecCCccEEEecCccee
Confidence 36889999995 34444 99999999999976543
No 50
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.93 E-value=1.5e-24 Score=247.85 Aligned_cols=242 Identities=18% Similarity=0.273 Sum_probs=201.6
Q ss_pred cceEEEEEeCCCCCEEEEEeCCCeEEEEEC-CCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCC
Q 003822 454 FRPRQFEYHPSISCLMVFGTLDGEIVVVNH-ENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMP 532 (793)
Q Consensus 454 ~~V~~vafsP~d~~~Lasgs~DG~I~VWd~-~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~ 532 (793)
..|+.++|+| ++.++++|+.|++|+|||+ ..+..+.++. +|...|++++|+ +.++++++|+.|++|++||+++++
T Consensus 204 ~~v~~~~fs~-d~~~l~s~s~D~tiriwd~~~~~~~~~~l~--gH~~~v~~~~f~-p~g~~i~Sgs~D~tvriWd~~~~~ 279 (456)
T KOG0266|consen 204 RGVSDVAFSP-DGSYLLSGSDDKTLRIWDLKDDGRNLKTLK--GHSTYVTSVAFS-PDGNLLVSGSDDGTVRIWDVRTGE 279 (456)
T ss_pred cceeeeEECC-CCcEEEEecCCceEEEeeccCCCeEEEEec--CCCCceEEEEec-CCCCEEEEecCCCcEEEEeccCCe
Confidence 3499999999 9999999999999999999 5557888887 999999999998 567999999999999999999965
Q ss_pred CcccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCc--EEEEEcccCCC--CeEEEEEcCCCCcE
Q 003822 533 PSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGR--RLQVFADMHKE--HINVVKFSNHSPSI 608 (793)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~--~l~~~~~gh~~--~V~sv~fspdg~~~ 608 (793)
.. ...-.|.++|.+++|++++..+++++.|+.|++||+.++. +...+. ++.. +++++.|+|++ .+
T Consensus 280 ~~---------~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~-~~~~~~~~~~~~fsp~~-~~ 348 (456)
T KOG0266|consen 280 CV---------RKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLS-GAENSAPVTSVQFSPNG-KY 348 (456)
T ss_pred EE---------EeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeeccc-CCCCCCceeEEEECCCC-cE
Confidence 42 1223455789999999999999999999999999999999 567776 3544 49999999999 89
Q ss_pred EEEEeCCCeEEEEECCCCCccceEEccCCC--CeEEEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcE
Q 003822 609 FATSSFDQDVKLWDLRQKPIQPCYTASSSK--GNVMVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNY 686 (793)
Q Consensus 609 LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~~--~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~ 686 (793)
+++++.|+.+++||++.+.....+...... ...+...++.|+++++|+.|+.|++||..++..+..+..+. ...+.
T Consensus 349 ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~--~~~~~ 426 (456)
T KOG0266|consen 349 LLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHS--KAAVS 426 (456)
T ss_pred EEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCC--CCcee
Confidence 999999999999999987555444433222 22235567899999999999999999999988877776322 56778
Q ss_pred EEEEeeCCCeEEEEEe--CCCcEEEEEEcC
Q 003822 687 TRSYYLNGRDYIVSGS--CDEHVVRICCAQ 714 (793)
Q Consensus 687 s~afspdg~~~L~Sgs--~Dg~II~IWDv~ 714 (793)
.+++++... ++++++ .|+.+ ++|...
T Consensus 427 ~~~~~~~~~-~~~s~s~~~d~~~-~~w~~~ 454 (456)
T KOG0266|consen 427 DLSSHPTEN-LIASSSFEGDGLI-RLWKYD 454 (456)
T ss_pred ccccCCCcC-eeeecCcCCCceE-EEecCC
Confidence 889999988 899888 68888 999754
No 51
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.93 E-value=9.4e-25 Score=221.69 Aligned_cols=253 Identities=17% Similarity=0.232 Sum_probs=211.6
Q ss_pred ccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCc
Q 003822 494 SFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKN 573 (793)
Q Consensus 494 ~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~ 573 (793)
..+|.+.|..+.|+ |+|..||+|+.|..|.+|++.......-.+ -.|.+.|..+.|.+++..++++|.|.+
T Consensus 43 l~gh~geI~~~~F~-P~gs~~aSgG~Dr~I~LWnv~gdceN~~~l--------kgHsgAVM~l~~~~d~s~i~S~gtDk~ 113 (338)
T KOG0265|consen 43 LPGHKGEIYTIKFH-PDGSCFASGGSDRAIVLWNVYGDCENFWVL--------KGHSGAVMELHGMRDGSHILSCGTDKT 113 (338)
T ss_pred cCCCcceEEEEEEC-CCCCeEeecCCcceEEEEeccccccceeee--------ccccceeEeeeeccCCCEEEEecCCce
Confidence 45999999999998 599999999999999999976644322222 256688999999999999999999999
Q ss_pred EEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEECCCCCccceEEccCCCCeEEEEEecCCCEEE
Q 003822 574 IALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLL 653 (793)
Q Consensus 574 I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~~~~vsv~fSpdg~~La 653 (793)
|+.||+++|+.++.++ +|...|+++.-+.-|+.++.+|+.||++++||+|+... +.++.......++.|..++..+.
T Consensus 114 v~~wD~~tG~~~rk~k-~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~--~~t~~~kyqltAv~f~d~s~qv~ 190 (338)
T KOG0265|consen 114 VRGWDAETGKRIRKHK-GHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEA--IKTFENKYQLTAVGFKDTSDQVI 190 (338)
T ss_pred EEEEecccceeeehhc-cccceeeecCccccCCeEEEecCCCceEEEEeecccch--hhccccceeEEEEEeccccccee
Confidence 9999999999999999 79999999997778888999999999999999998743 44444455667899999999999
Q ss_pred EEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCC----cEEEeeeecCCCC
Q 003822 654 VSAVDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTG----RRLRDISLEGKGS 729 (793)
Q Consensus 654 sgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg----~~l~~~~L~gh~~ 729 (793)
+|+-|+.|++||++.+.....+. ++...++.+..+++|. ++.+-+.|.++ ++||++.- +++. .+.||.
T Consensus 191 sggIdn~ikvWd~r~~d~~~~ls---Gh~DtIt~lsls~~gs-~llsnsMd~tv-rvwd~rp~~p~~R~v~--if~g~~- 262 (338)
T KOG0265|consen 191 SGGIDNDIKVWDLRKNDGLYTLS---GHADTITGLSLSRYGS-FLLSNSMDNTV-RVWDVRPFAPSQRCVK--IFQGHI- 262 (338)
T ss_pred eccccCceeeeccccCcceEEee---cccCceeeEEeccCCC-ccccccccceE-EEEEecccCCCCceEE--Eeecch-
Confidence 99999999999999999888886 5778899999999999 99999999999 99998643 3366 666665
Q ss_pred CccceeeeccCCccccCCccEEEEEEcCCCCceeeEeeEEEeCCCcEEEEcCCCCC
Q 003822 730 GTSMFVQSLRGDPFRDFNMSILAAYTRPSSKSEIVKVNLLASTDHCDKECSHGQHS 785 (793)
Q Consensus 730 ~~s~~v~sl~g~~~~~h~~~V~sva~~P~~~~~iv~~~ltaS~Dg~VkvW~~~~~~ 785 (793)
+ .+....+..+|+|+ ...+- .||+|..|.+|+.-...
T Consensus 263 -----------h---nfeknlL~cswsp~-~~~i~----ags~dr~vyvwd~~~r~ 299 (338)
T KOG0265|consen 263 -----------H---NFEKNLLKCSWSPN-GTKIT----AGSADRFVYVWDTTSRR 299 (338)
T ss_pred -----------h---hhhhhcceeeccCC-CCccc----cccccceEEEeeccccc
Confidence 1 23345778999996 33444 57999999999986654
No 52
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=3.5e-24 Score=214.86 Aligned_cols=245 Identities=16% Similarity=0.191 Sum_probs=194.2
Q ss_pred cccceEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCC
Q 003822 452 RSFRPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHM 531 (793)
Q Consensus 452 ~~~~V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~ 531 (793)
+...|++++|+| .+++||+|+.|.++.||.-..++....-.+.||...|.+++|+ .+|++||+++.|++|-||.+..+
T Consensus 60 hkrsVRsvAwsp-~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws-~sG~~LATCSRDKSVWiWe~ded 137 (312)
T KOG0645|consen 60 HKRSVRSVAWSP-HGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWS-ASGNYLATCSRDKSVWIWEIDED 137 (312)
T ss_pred chheeeeeeecC-CCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEc-CCCCEEEEeeCCCeEEEEEecCC
Confidence 344599999999 9999999999999999998766554444445999999999998 89999999999999999999854
Q ss_pred CCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECC---CCcEEEEEcccCCCCeEEEEEcCCCCcE
Q 003822 532 PPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDIN---SGRRLQVFADMHKEHINVVKFSNHSPSI 608 (793)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~---tg~~l~~~~~gh~~~V~sv~fspdg~~~ 608 (793)
... .-..+...|...|..+.|||..+.++++++|++|++|+-. .-.+++++. +|...|.+++|+|.| ..
T Consensus 138 dEf------ec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~-g~~~TVW~~~F~~~G-~r 209 (312)
T KOG0645|consen 138 DEF------ECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLD-GHENTVWSLAFDNIG-SR 209 (312)
T ss_pred CcE------EEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEec-CccceEEEEEecCCC-ce
Confidence 431 0112334566789999999999999999999999999876 246788898 699999999999999 89
Q ss_pred EEEEeCCCeEEEEECCCCCccceEEccCCCCeEEEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEE----EeeecCCCCC
Q 003822 609 FATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLN----FGITATGSSQ 684 (793)
Q Consensus 609 LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~----l~~~~~~~~~ 684 (793)
|++++.|++|+||-..+.- ..........+.|. ...|++++.|+.|++|.-..+-.-.. ......|...
T Consensus 210 l~s~sdD~tv~Iw~~~~~~-----~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~d 282 (312)
T KOG0645|consen 210 LVSCSDDGTVSIWRLYTDL-----SGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVD 282 (312)
T ss_pred EEEecCCcceEeeeeccCc-----chhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccc
Confidence 9999999999999876431 11122334458888 45699999999999997654311111 1123356668
Q ss_pred cEEEEEeeCCCeEEEEEeCCCcEEEEEEcC
Q 003822 685 NYTRSYYLNGRDYIVSGSCDEHVVRICCAQ 714 (793)
Q Consensus 685 v~s~afspdg~~~L~Sgs~Dg~II~IWDv~ 714 (793)
+.++.|.|.....|++|++||.+ ++|.+.
T Consensus 283 VNsV~w~p~~~~~L~s~~DDG~v-~~W~l~ 311 (312)
T KOG0645|consen 283 VNSVQWNPKVSNRLASGGDDGIV-NFWELE 311 (312)
T ss_pred cceEEEcCCCCCceeecCCCceE-EEEEec
Confidence 99999999756689999999999 999864
No 53
>PTZ00421 coronin; Provisional
Probab=99.93 E-value=1.7e-23 Score=239.26 Aligned_cols=250 Identities=12% Similarity=0.110 Sum_probs=182.4
Q ss_pred EEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEE-----------EeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEE
Q 003822 459 FEYHPSISCLMVFGTLDGEIVVVNHENENIVSY-----------IPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYD 527 (793)
Q Consensus 459 vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~-----------l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWD 527 (793)
...++ ++..+++++.+.....|+...+..+.. ..+.+|.+.|.+++|+|.++++|++|+.|++|++||
T Consensus 26 ~~~~~-d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWd 104 (493)
T PTZ00421 26 STALW-DCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWG 104 (493)
T ss_pred ccccC-CCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEe
Confidence 33444 434455665566666665443322110 112489999999999865888999999999999999
Q ss_pred cCCCCCcccccccCCcee-EecCCCCeEEEEEccCC-CEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCC
Q 003822 528 IRHMPPSIRGMHYGAGTV-TFDEFDQLTSVHVNSMD-ELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHS 605 (793)
Q Consensus 528 l~~~~~~~~~~~~~~~~~-~~~~~~~V~sv~~s~~~-~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg 605 (793)
+.++...... ..... ...|...|.+++|+|.+ +.+++++.|++|+|||+.+++.+..+. +|...|.+++|+|++
T Consensus 105 i~~~~~~~~~---~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~-~h~~~V~sla~spdG 180 (493)
T PTZ00421 105 IPEEGLTQNI---SDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIK-CHSDQITSLEWNLDG 180 (493)
T ss_pred cCCCcccccc---CcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEc-CCCCceEEEEEECCC
Confidence 9865321000 00111 23456789999999986 578888899999999999999999998 699999999999999
Q ss_pred CcEEEEEeCCCeEEEEECCCCCccceEEccCCCCe--EEEEEecCCCEEEEEe----CCCeEEEEEcCCCcE-EEEEeee
Q 003822 606 PSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGN--VMVCFSPDDHYLLVSA----VDNEVRQLLAVDGRV-HLNFGIT 678 (793)
Q Consensus 606 ~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~~~~--vsv~fSpdg~~Lasgs----~Dg~I~IwDl~tg~~-~~~l~~~ 678 (793)
.+|++|+.|++|++||+++++ .+..+.+|.+. ..+.|.+++..+++++ .|+.|++||+++... ......
T Consensus 181 -~lLatgs~Dg~IrIwD~rsg~--~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~- 256 (493)
T PTZ00421 181 -SLLCTTSKDKKLNIIDPRDGT--IVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDL- 256 (493)
T ss_pred -CEEEEecCCCEEEEEECCCCc--EEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEecc-
Confidence 899999999999999999874 34455555543 3578999888887754 478999999987643 222221
Q ss_pred cCCCCCcEEEEEeeCCCeEEEEEe-CCCcEEEEEEcCCCcEEE
Q 003822 679 ATGSSQNYTRSYYLNGRDYIVSGS-CDEHVVRICCAQTGRRLR 720 (793)
Q Consensus 679 ~~~~~~v~s~afspdg~~~L~Sgs-~Dg~II~IWDv~tg~~l~ 720 (793)
.....+....|++++. +|++|+ .|+.| ++||+.+++.+.
T Consensus 257 -d~~~~~~~~~~d~d~~-~L~lggkgDg~I-riwdl~~~~~~~ 296 (493)
T PTZ00421 257 -DQSSALFIPFFDEDTN-LLYIGSKGEGNI-RCFELMNERLTF 296 (493)
T ss_pred -CCCCceEEEEEcCCCC-EEEEEEeCCCeE-EEEEeeCCceEE
Confidence 2233455567888988 677666 69999 999999998877
No 54
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=6.5e-25 Score=227.59 Aligned_cols=236 Identities=15% Similarity=0.236 Sum_probs=204.9
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCC-CeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCc
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHEN-ENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS 534 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t-~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~ 534 (793)
|..|+|+. .|+++|+++.|-.+.+||.++ .+++..+. +|...|.+++|. |.|+++++++.|.+|+.|++.++.+.
T Consensus 153 v~di~~~a-~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~--gh~h~vS~V~f~-P~gd~ilS~srD~tik~We~~tg~cv 228 (406)
T KOG0295|consen 153 VFDISFDA-SGKYLATCSSDLSAKLWDFDTFFRCIKSLI--GHEHGVSSVFFL-PLGDHILSCSRDNTIKAWECDTGYCV 228 (406)
T ss_pred eeEEEEec-CccEEEecCCccchhheeHHHHHHHHHHhc--CcccceeeEEEE-ecCCeeeecccccceeEEecccceeE
Confidence 88999999 899999999999999999876 33444443 888899999998 57899999999999999999997762
Q ss_pred ccccccCCceeEe-cCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCC--------
Q 003822 535 IRGMHYGAGTVTF-DEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHS-------- 605 (793)
Q Consensus 535 ~~~~~~~~~~~~~-~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg-------- 605 (793)
.++ .|...|..++.+.++..+++++.|.++++|-+.++++...+. .|+.+|.+++|.|..
T Consensus 229 ----------~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR-~hEh~vEci~wap~~~~~~i~~a 297 (406)
T KOG0295|consen 229 ----------KTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELR-EHEHPVECIAWAPESSYPSISEA 297 (406)
T ss_pred ----------EeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhh-ccccceEEEEecccccCcchhhc
Confidence 222 233568888987777777777889999999999999999998 699999999998742
Q ss_pred ------CcEEEEEeCCCeEEEEECCCCCccceEEccCCCCeEE-EEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeee
Q 003822 606 ------PSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVM-VCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGIT 678 (793)
Q Consensus 606 ------~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~~~~vs-v~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~ 678 (793)
+.++++++.|++|++||+.++ ..++++.+|...++ ++|+|.|+||+++..|+++++||+.++++..++.
T Consensus 298 t~~~~~~~~l~s~SrDktIk~wdv~tg--~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~-- 373 (406)
T KOG0295|consen 298 TGSTNGGQVLGSGSRDKTIKIWDVSTG--MCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLE-- 373 (406)
T ss_pred cCCCCCccEEEeecccceEEEEeccCC--eEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccC--
Confidence 269999999999999999998 67889999999987 9999999999999999999999999999988876
Q ss_pred cCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEc
Q 003822 679 ATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCA 713 (793)
Q Consensus 679 ~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv 713 (793)
.+...+.++.|..+-. |++||+-|.++ ++|.-
T Consensus 374 -ah~hfvt~lDfh~~~p-~VvTGsVdqt~-KvwEc 405 (406)
T KOG0295|consen 374 -AHEHFVTSLDFHKTAP-YVVTGSVDQTV-KVWEC 405 (406)
T ss_pred -CCcceeEEEecCCCCc-eEEecccccee-eeeec
Confidence 5667788899988877 99999999999 99963
No 55
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=2.5e-24 Score=211.81 Aligned_cols=244 Identities=20% Similarity=0.317 Sum_probs=201.5
Q ss_pred CCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcccccccCCceeEe-cCCCCeEEEEEccCCCEEEEEECCCcE
Q 003822 496 GAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTF-DEFDQLTSVHVNSMDELFLASGYSKNI 574 (793)
Q Consensus 496 ~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~~~~~~~~~~~~~-~~~~~V~sv~~s~~~~~lla~g~Dg~I 574 (793)
.|+++|.++.|+ .+|++.++++.|++|++|+...+.. ..++ .|...|..++.+.++..++++|.|..|
T Consensus 15 ~~qgaV~avryN-~dGnY~ltcGsdrtvrLWNp~rg~l----------iktYsghG~EVlD~~~s~Dnskf~s~GgDk~v 83 (307)
T KOG0316|consen 15 CAQGAVRAVRYN-VDGNYCLTCGSDRTVRLWNPLRGAL----------IKTYSGHGHEVLDAALSSDNSKFASCGGDKAV 83 (307)
T ss_pred ccccceEEEEEc-cCCCEEEEcCCCceEEeecccccce----------eeeecCCCceeeeccccccccccccCCCCceE
Confidence 789999999997 8999999999999999999987654 2233 344678999999999999999999999
Q ss_pred EEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEECCCCCccceEEccCCCCeE-EEEEecCCCEEE
Q 003822 575 ALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLL 653 (793)
Q Consensus 575 ~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~~~~v-sv~fSpdg~~La 653 (793)
.+||+.+|+.++.+. +|.+.|+.++|+.+. ..+++|+.|.++++||-|+....|+..+......+ ++..+ +..|+
T Consensus 84 ~vwDV~TGkv~Rr~r-gH~aqVNtV~fNees-SVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIv 159 (307)
T KOG0316|consen 84 QVWDVNTGKVDRRFR-GHLAQVNTVRFNEES-SVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIV 159 (307)
T ss_pred EEEEcccCeeeeecc-cccceeeEEEecCcc-eEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEE
Confidence 999999999999999 799999999999888 89999999999999999998878887776544433 45554 67899
Q ss_pred EEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCCCCccc
Q 003822 654 VSAVDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKGSGTSM 733 (793)
Q Consensus 654 sgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~ 733 (793)
+|+.||+++.||++.|++...+ -..++.+++|+++++ ..++++.|+++ ++-|-.||++++ ..+||.+..
T Consensus 160 aGS~DGtvRtydiR~G~l~sDy-----~g~pit~vs~s~d~n-c~La~~l~stl-rLlDk~tGklL~--sYkGhkn~e-- 228 (307)
T KOG0316|consen 160 AGSVDGTVRTYDIRKGTLSSDY-----FGHPITSVSFSKDGN-CSLASSLDSTL-RLLDKETGKLLK--SYKGHKNME-- 228 (307)
T ss_pred eeccCCcEEEEEeecceeehhh-----cCCcceeEEecCCCC-EEEEeecccee-eecccchhHHHH--Hhcccccce--
Confidence 9999999999999999886554 345789999999999 88999999999 999999999999 888887311
Q ss_pred eeeeccCCccccCCccEEEEEEcCCCCceeeEeeEEEeCCCcEEEEcCCCCC
Q 003822 734 FVQSLRGDPFRDFNMSILAAYTRPSSKSEIVKVNLLASTDHCDKECSHGQHS 785 (793)
Q Consensus 734 ~v~sl~g~~~~~h~~~V~sva~~P~~~~~iv~~~ltaS~Dg~VkvW~~~~~~ 785 (793)
| -+...+.. ...-+ +.||.||.|.+|++-...
T Consensus 229 y---------------kldc~l~q-sdthV----~sgSEDG~Vy~wdLvd~~ 260 (307)
T KOG0316|consen 229 Y---------------KLDCCLNQ-SDTHV----FSGSEDGKVYFWDLVDET 260 (307)
T ss_pred e---------------eeeeeecc-cceeE----EeccCCceEEEEEeccce
Confidence 1 11112222 12223 489999999999976543
No 56
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.93 E-value=2.3e-23 Score=216.64 Aligned_cols=235 Identities=22% Similarity=0.275 Sum_probs=195.9
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcc
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSI 535 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~ 535 (793)
+..+.|+| +++.+++++.+|.|++|++.+++....+. .|...|.++.|+ +++.++++++.||.|.+||+.+++...
T Consensus 54 i~~~~~~~-~~~~l~~~~~~~~i~i~~~~~~~~~~~~~--~~~~~i~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~ 129 (289)
T cd00200 54 VRDVAASA-DGTYLASGSSDKTIRLWDLETGECVRTLT--GHTSYVSSVAFS-PDGRILSSSSRDKTIKVWDVETGKCLT 129 (289)
T ss_pred eeEEEECC-CCCEEEEEcCCCeEEEEEcCcccceEEEe--ccCCcEEEEEEc-CCCCEEEEecCCCeEEEEECCCcEEEE
Confidence 67899999 77899999999999999999887777766 788899999998 567888888889999999998644311
Q ss_pred cccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeCC
Q 003822 536 RGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFD 615 (793)
Q Consensus 536 ~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~D 615 (793)
. ...+...+.++.+++.+..+++++.++.|++||+++++.+..+. .|...+.++.|+|++ ..+++++.|
T Consensus 130 ~---------~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~~~~-~~l~~~~~~ 198 (289)
T cd00200 130 T---------LRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLT-GHTGEVNSVAFSPDG-EKLLSSSSD 198 (289)
T ss_pred E---------eccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEe-cCccccceEEECCCc-CEEEEecCC
Confidence 1 11345679999998886666666669999999999999998888 698999999999998 788888889
Q ss_pred CeEEEEECCCCCccceEEccCCC-CeEEEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCC
Q 003822 616 QDVKLWDLRQKPIQPCYTASSSK-GNVMVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNG 694 (793)
Q Consensus 616 g~IrIWDlrt~~~~~~~~l~~~~-~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg 694 (793)
+.|++||++++.. ...+..+. .+.++.|+|++.++++++.||.+++||+.+++....+. .+...+..++|++++
T Consensus 199 ~~i~i~d~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~---~~~~~i~~~~~~~~~ 273 (289)
T cd00200 199 GTIKLWDLSTGKC--LGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLS---GHTNSVTSLAWSPDG 273 (289)
T ss_pred CcEEEEECCCCce--ecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEcc---ccCCcEEEEEECCCC
Confidence 9999999988643 33443444 44569999999999888889999999999988877775 455678899999998
Q ss_pred CeEEEEEeCCCcEEEEEE
Q 003822 695 RDYIVSGSCDEHVVRICC 712 (793)
Q Consensus 695 ~~~L~Sgs~Dg~II~IWD 712 (793)
. ++++++.||.+ ++|+
T Consensus 274 ~-~l~~~~~d~~i-~iw~ 289 (289)
T cd00200 274 K-RLASGSADGTI-RIWD 289 (289)
T ss_pred C-EEEEecCCCeE-EecC
Confidence 8 99999999999 9996
No 57
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=7.7e-24 Score=227.06 Aligned_cols=283 Identities=15% Similarity=0.194 Sum_probs=225.0
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcc
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSI 535 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~ 535 (793)
|++++|+|..+.-+|+.+. -.+.+|+..+.....++. .....|.+++|- .+|.++++|+..|.|+++|+.+ +..+
T Consensus 29 vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~~k~~s--rFk~~v~s~~fR-~DG~LlaaGD~sG~V~vfD~k~-r~iL 103 (487)
T KOG0310|consen 29 VSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSVRKTFS--RFKDVVYSVDFR-SDGRLLAAGDESGHVKVFDMKS-RVIL 103 (487)
T ss_pred ceeEecCCCCCCceEEecc-cEEEEEecchhhhhhhHH--hhccceeEEEee-cCCeEEEccCCcCcEEEecccc-HHHH
Confidence 8999999977777777664 469999988877766554 556789999996 8999999999999999999544 3333
Q ss_pred cccccCCceeEecCCCCeEEEEEccCCCEEEEEEC-CCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeC
Q 003822 536 RGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY-SKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSF 614 (793)
Q Consensus 536 ~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~-Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~ 614 (793)
+... .|..+|..+.|+|.++.+++.|+ |+.+++||+.+......+. +|++.|.|.+|+|..+.+++|||.
T Consensus 104 R~~~--------ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~-~htDYVR~g~~~~~~~hivvtGsY 174 (487)
T KOG0310|consen 104 RQLY--------AHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELS-GHTDYVRCGDISPANDHIVVTGSY 174 (487)
T ss_pred HHHh--------hccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEec-CCcceeEeeccccCCCeEEEecCC
Confidence 3332 45578899999999988877774 6889999999988765777 799999999999998789999999
Q ss_pred CCeEEEEECCCCCccceEEccCCCCeEEEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCC
Q 003822 615 DQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNG 694 (793)
Q Consensus 615 Dg~IrIWDlrt~~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg 694 (793)
||+||+||+|... ..+..+.+..++-++.+-|.|..|++++ .+.|+|||+.+|....... ..|+..++++.+..++
T Consensus 175 Dg~vrl~DtR~~~-~~v~elnhg~pVe~vl~lpsgs~iasAg-Gn~vkVWDl~~G~qll~~~--~~H~KtVTcL~l~s~~ 250 (487)
T KOG0310|consen 175 DGKVRLWDTRSLT-SRVVELNHGCPVESVLALPSGSLIASAG-GNSVKVWDLTTGGQLLTSM--FNHNKTVTCLRLASDS 250 (487)
T ss_pred CceEEEEEeccCC-ceeEEecCCCceeeEEEcCCCCEEEEcC-CCeEEEEEecCCceehhhh--hcccceEEEEEeecCC
Confidence 9999999999865 5566776555555699999999999988 4689999999765433322 2377889999999998
Q ss_pred CeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCCCCccceeeeccCCccccCCccEEEEEEcCCCCceeeEeeEEEeCCC
Q 003822 695 RDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKSEIVKVNLLASTDH 774 (793)
Q Consensus 695 ~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~~~~iv~~~ltaS~Dg 774 (793)
. .|+|||-|+.| ++||+.+-+.+. .+. +.++|++++.+|+ ...++ .|..||
T Consensus 251 ~-rLlS~sLD~~V-KVfd~t~~Kvv~--s~~--------------------~~~pvLsiavs~d-d~t~v----iGmsnG 301 (487)
T KOG0310|consen 251 T-RLLSGSLDRHV-KVFDTTNYKVVH--SWK--------------------YPGPVLSIAVSPD-DQTVV----IGMSNG 301 (487)
T ss_pred c-eEeecccccce-EEEEccceEEEE--eee--------------------cccceeeEEecCC-CceEE----Eecccc
Confidence 7 99999999999 999988888777 221 2247999999994 44555 788898
Q ss_pred cEEEEcCCCCC
Q 003822 775 CDKECSHGQHS 785 (793)
Q Consensus 775 ~VkvW~~~~~~ 785 (793)
.+-+=+..-+.
T Consensus 302 lv~~rr~~~k~ 312 (487)
T KOG0310|consen 302 LVSIRRREVKK 312 (487)
T ss_pred eeeeehhhccc
Confidence 87776443333
No 58
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=1.6e-24 Score=245.85 Aligned_cols=242 Identities=19% Similarity=0.205 Sum_probs=195.0
Q ss_pred cceEEEEEeCCCCCEEEEEeCCCeEEEEECCC--------------------------------Ce--------------
Q 003822 454 FRPRQFEYHPSISCLMVFGTLDGEIVVVNHEN--------------------------------EN-------------- 487 (793)
Q Consensus 454 ~~V~~vafsP~d~~~Lasgs~DG~I~VWd~~t--------------------------------~~-------------- 487 (793)
-+|.++.|++ ||++||+||.||.|+||.+.. ..
T Consensus 268 gaIw~mKFS~-DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s~ 346 (712)
T KOG0283|consen 268 GAIWAMKFSH-DGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQSP 346 (712)
T ss_pred CcEEEEEeCC-CCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccCCc
Confidence 3599999999 999999999999999998643 00
Q ss_pred --------------EEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcccccccCCceeEecCCCCe
Q 003822 488 --------------IVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQL 553 (793)
Q Consensus 488 --------------~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V 553 (793)
++. .+.||.+.|..+.|+ ..++|++++.|.||++|++....+ ...|.|.+.|
T Consensus 347 ~~~~p~~~f~f~ekP~~--ef~GHt~DILDlSWS--Kn~fLLSSSMDKTVRLWh~~~~~C----------L~~F~HndfV 412 (712)
T KOG0283|consen 347 CVLLPLKAFVFSEKPFC--EFKGHTADILDLSWS--KNNFLLSSSMDKTVRLWHPGRKEC----------LKVFSHNDFV 412 (712)
T ss_pred cccCCCccccccccchh--hhhccchhheecccc--cCCeeEeccccccEEeecCCCcce----------eeEEecCCee
Confidence 000 123899999999997 567999999999999999998665 5689999999
Q ss_pred EEEEEccCC-CEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEECCCCCccceE
Q 003822 554 TSVHVNSMD-ELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCY 632 (793)
Q Consensus 554 ~sv~~s~~~-~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~Dg~IrIWDlrt~~~~~~~ 632 (793)
+||+|+|.+ ++|++|+-||.|+||++...+.+.-.. -..-|++++|.|+| +..+.|+.+|.+++|+++..+.....
T Consensus 413 TcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~D--l~~lITAvcy~PdG-k~avIGt~~G~C~fY~t~~lk~~~~~ 489 (712)
T KOG0283|consen 413 TCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWND--LRDLITAVCYSPDG-KGAVIGTFNGYCRFYDTEGLKLVSDF 489 (712)
T ss_pred EEEEecccCCCcEeecccccceEEeecCcCeeEeehh--hhhhheeEEeccCC-ceEEEEEeccEEEEEEccCCeEEEee
Confidence 999999965 567777789999999999776655443 44899999999998 89999999999999999876443333
Q ss_pred EccC-------CCCeEEEEEecCC-CEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCCCeEEEEEeCC
Q 003822 633 TASS-------SKGNVMVCFSPDD-HYLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNGRDYIVSGSCD 704 (793)
Q Consensus 633 ~l~~-------~~~~vsv~fSpdg-~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~D 704 (793)
.+.. +..++.+.|.|.. ..+++.+.|..|+|||.++-.++..|++..... ......|+.||+ +|++|++|
T Consensus 490 ~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~-SQ~~Asfs~Dgk-~IVs~seD 567 (712)
T KOG0283|consen 490 HIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTS-SQISASFSSDGK-HIVSASED 567 (712)
T ss_pred eEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCC-cceeeeEccCCC-EEEEeecC
Confidence 2221 2245568898743 358888889999999999989988888655443 356778999999 99999999
Q ss_pred CcEEEEEEcCCC
Q 003822 705 EHVVRICCAQTG 716 (793)
Q Consensus 705 g~II~IWDv~tg 716 (793)
..| +||+....
T Consensus 568 s~V-YiW~~~~~ 578 (712)
T KOG0283|consen 568 SWV-YIWKNDSF 578 (712)
T ss_pred ceE-EEEeCCCC
Confidence 999 99998443
No 59
>PTZ00420 coronin; Provisional
Probab=99.93 E-value=7.6e-23 Score=235.40 Aligned_cols=235 Identities=17% Similarity=0.293 Sum_probs=178.4
Q ss_pred EeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcccccccCCceeEecCCC
Q 003822 472 GTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFD 551 (793)
Q Consensus 472 gs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~~~~~~~~~~~~~~~~~ 551 (793)
|+.+|.|++|+..+...+..+. +|.+.|.+++|+|.++++|++|+.||+|++||+.++........ ........|..
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~--gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~-~p~~~L~gH~~ 126 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLK--GHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIK-DPQCILKGHKK 126 (568)
T ss_pred CCceeEEEeeecCCCceEEEEc--CCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccc-cceEEeecCCC
Confidence 6678899999988766666665 89999999999865688999999999999999986432111110 00011234667
Q ss_pred CeEEEEEccCCCEEE-EEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEECCCCCccc
Q 003822 552 QLTSVHVNSMDELFL-ASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQP 630 (793)
Q Consensus 552 ~V~sv~~s~~~~~ll-a~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~Dg~IrIWDlrt~~~~~ 630 (793)
.|.+++|+|.+..++ +++.|++|++||+++++.+..+. |...|.+++|+|+| .+|++++.|+.|+|||++++..
T Consensus 127 ~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~--~~~~V~SlswspdG-~lLat~s~D~~IrIwD~Rsg~~-- 201 (568)
T PTZ00420 127 KISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN--MPKKLSSLKWNIKG-NLLSGTCVGKHMHIIDPRKQEI-- 201 (568)
T ss_pred cEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe--cCCcEEEEEECCCC-CEEEEEecCCEEEEEECCCCcE--
Confidence 899999999887764 66789999999999999888776 66889999999999 8999999999999999999743
Q ss_pred eEEccCCCCeE-E-----EEEecCCCEEEEEeCCC----eEEEEEcCC-CcEEEEEeeecCCCCCcEEEEEeeCCCeEEE
Q 003822 631 CYTASSSKGNV-M-----VCFSPDDHYLLVSAVDN----EVRQLLAVD-GRVHLNFGITATGSSQNYTRSYYLNGRDYIV 699 (793)
Q Consensus 631 ~~~l~~~~~~v-s-----v~fSpdg~~Lasgs~Dg----~I~IwDl~t-g~~~~~l~~~~~~~~~v~s~afspdg~~~L~ 699 (793)
+..+.+|.+.+ + ..|++++.+|++++.|+ .|++||+++ ++++..+.. .....+....|.++.+.+++
T Consensus 202 i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~l--d~~~~~L~p~~D~~tg~l~l 279 (568)
T PTZ00420 202 ASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSI--DNASAPLIPHYDESTGLIYL 279 (568)
T ss_pred EEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEe--cCCccceEEeeeCCCCCEEE
Confidence 45556666542 1 23568999999988764 799999995 566655542 22233434455555444899
Q ss_pred EEeCCCcEEEEEEcCCCc
Q 003822 700 SGSCDEHVVRICCAQTGR 717 (793)
Q Consensus 700 Sgs~Dg~II~IWDv~tg~ 717 (793)
+|+.|++| ++|++..+.
T Consensus 280 sGkGD~tI-r~~e~~~~~ 296 (568)
T PTZ00420 280 IGKGDGNC-RYYQHSLGS 296 (568)
T ss_pred EEECCCeE-EEEEccCCc
Confidence 99999999 999998774
No 60
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.93 E-value=3.1e-24 Score=230.30 Aligned_cols=313 Identities=15% Similarity=0.184 Sum_probs=226.5
Q ss_pred cCceeeeeccCCCCCCCCcccceEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeE----EEEEeccCCCCCEEEEEEeeC
Q 003822 434 WPCLHTLTVSGNHMGDENRSFRPRQFEYHPSISCLMVFGTLDGEIVVVNHENENI----VSYIPSFGAMNSVLGLCWLKK 509 (793)
Q Consensus 434 ~p~~~~l~~~g~~~~~~~~~~~V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~----i~~l~~~~h~~~V~sv~fs~~ 509 (793)
-|..+.+.+.+|.. .|+++++.| .|..+++|+.|.+|+.||+..... ...+. ......|.++.|+ +
T Consensus 155 IP~shEi~l~hgtk-------~Vsal~~Dp-~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~-P~E~h~i~sl~ys-~ 224 (641)
T KOG0772|consen 155 IPGSHEIQLKHGTK-------IVSALAVDP-SGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQ-PCETHQINSLQYS-V 224 (641)
T ss_pred CCccceEeccCCce-------EEEEeeecC-CCceeeeccccceEEEEecccccccchhhhccC-cccccccceeeec-C
Confidence 35555555544443 399999999 999999999999999999874321 22221 1334579999998 6
Q ss_pred CCCEEEEEEcCCcEEEEEcCCCCCcccccccC----CceeEecCCCCeEEEEEccCC-CEEEEEECCCcEEEEECCCCc-
Q 003822 510 YPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYG----AGTVTFDEFDQLTSVHVNSMD-ELFLASGYSKNIALYDINSGR- 583 (793)
Q Consensus 510 ~g~~Lasgs~DgtV~vWDl~~~~~~~~~~~~~----~~~~~~~~~~~V~sv~~s~~~-~~lla~g~Dg~I~IWDl~tg~- 583 (793)
.++.|++.+.....+++|-..... .....+. .-..+-.|...+++.+|+|.. +.|++++.||++++||+...+
T Consensus 225 Tg~~iLvvsg~aqakl~DRdG~~~-~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~ 303 (641)
T KOG0772|consen 225 TGDQILVVSGSAQAKLLDRDGFEI-VEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKS 303 (641)
T ss_pred CCCeEEEEecCcceeEEccCCcee-eeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchh
Confidence 777777777778999999765332 1111111 112234566789999999976 678888899999999998644
Q ss_pred EEEEEc----ccCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEECCCCCccceEEc-cCCC---CeEEEEEecCCCEEEEE
Q 003822 584 RLQVFA----DMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTA-SSSK---GNVMVCFSPDDHYLLVS 655 (793)
Q Consensus 584 ~l~~~~----~gh~~~V~sv~fspdg~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l-~~~~---~~vsv~fSpdg~~Lasg 655 (793)
..+.++ ++..-+++..+|+|+| .+||+|..||.|.+||.+.....+.+.. ..|. .+.++.||+||++|++-
T Consensus 304 q~qVik~k~~~g~Rv~~tsC~~nrdg-~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSR 382 (641)
T KOG0772|consen 304 QLQVIKTKPAGGKRVPVTSCAWNRDG-KLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSR 382 (641)
T ss_pred heeEEeeccCCCcccCceeeecCCCc-chhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhc
Confidence 333333 2345578899999999 7899999999999999877544444432 2333 45679999999999999
Q ss_pred eCCCeEEEEEcCCCcE-EEEEeeecCCCCCcEEEEEeeCCCeEEEEEeC------CCcEEEEEEcCCCcEEEeeeecCCC
Q 003822 656 AVDNEVRQLLAVDGRV-HLNFGITATGSSQNYTRSYYLNGRDYIVSGSC------DEHVVRICCAQTGRRLRDISLEGKG 728 (793)
Q Consensus 656 s~Dg~I~IwDl~tg~~-~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~------Dg~II~IWDv~tg~~l~~~~L~gh~ 728 (793)
+.|+++++||++..+. +...... .....-..++|+|+.+ +|++|+. .|++ .+||..+-+.++++-+.
T Consensus 383 g~D~tLKvWDLrq~kkpL~~~tgL-~t~~~~tdc~FSPd~k-li~TGtS~~~~~~~g~L-~f~d~~t~d~v~ki~i~--- 456 (641)
T KOG0772|consen 383 GFDDTLKVWDLRQFKKPLNVRTGL-PTPFPGTDCCFSPDDK-LILTGTSAPNGMTAGTL-FFFDRMTLDTVYKIDIS--- 456 (641)
T ss_pred cCCCceeeeeccccccchhhhcCC-CccCCCCccccCCCce-EEEecccccCCCCCceE-EEEeccceeeEEEecCC---
Confidence 9999999999987643 3333221 1223456789999999 8888764 4667 99999998888833322
Q ss_pred CCccceeeeccCCccccCCccEEEEEEcCCCCceeeEeeEEEeCCCcEEEEcCCCCCCC
Q 003822 729 SGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKSEIVKVNLLASTDHCDKECSHGQHSRP 787 (793)
Q Consensus 729 ~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~~~~iv~~~ltaS~Dg~VkvW~~~~~~~~ 787 (793)
...|..+.||| .-++|+ .|++||+++++.-+..+.+
T Consensus 457 ------------------~aSvv~~~Whp-kLNQi~----~gsgdG~~~vyYdp~~S~R 492 (641)
T KOG0772|consen 457 ------------------TASVVRCLWHP-KLNQIF----AGSGDGTAHVYYDPNESIR 492 (641)
T ss_pred ------------------CceEEEEeecc-hhhhee----eecCCCceEEEECcccccc
Confidence 13699999999 677777 8999999999886666544
No 61
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=7.4e-23 Score=199.93 Aligned_cols=292 Identities=16% Similarity=0.187 Sum_probs=218.5
Q ss_pred ceEEEEEeCCCCCEEEEEeCCCeEEEEECCC------C----e---EEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCC
Q 003822 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHEN------E----N---IVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNG 521 (793)
Q Consensus 455 ~V~~vafsP~d~~~Lasgs~DG~I~VWd~~t------~----~---~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~Dg 521 (793)
+|++++||| .+.+.++|+...+++|..... + + .+..-+...|.+.|.|.+|+ +.|.++++|+.|.
T Consensus 34 airav~fhp-~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws-~~geliatgsndk 111 (350)
T KOG0641|consen 34 AIRAVAFHP-AGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWS-PCGELIATGSNDK 111 (350)
T ss_pred heeeEEecC-CCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEec-CccCeEEecCCCc
Confidence 389999999 899999999999999985421 1 0 12222234689999999998 8999999999999
Q ss_pred cEEEEEcCCCCCcccccccCCceeEecCCCCeEEEEEcc---CCCEEEEE-E-CCCcEEEEECCCCcEEEEEcccCCCCe
Q 003822 522 SLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNS---MDELFLAS-G-YSKNIALYDINSGRRLQVFADMHKEHI 596 (793)
Q Consensus 522 tV~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~---~~~~lla~-g-~Dg~I~IWDl~tg~~l~~~~~gh~~~V 596 (793)
+|++..++...+.... +.-. .--|.+.|..++|-. .++.++++ | .|..|++-|..+|+..+.+. ||++.|
T Consensus 112 ~ik~l~fn~dt~~~~g---~dle-~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~s-ghtghi 186 (350)
T KOG0641|consen 112 TIKVLPFNADTCNATG---HDLE-FNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALS-GHTGHI 186 (350)
T ss_pred eEEEEecccccccccC---ccee-eeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeec-CCcccE
Confidence 9999988775553322 2211 223557799999853 23445444 4 47888888999999999999 799999
Q ss_pred EEEEEcCCCCcEEEEEeCCCeEEEEECCCCCccceEEccCCC------CeEEEEEecCCCEEEEEeCCCeEEEEEcCCCc
Q 003822 597 NVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSK------GNVMVCFSPDDHYLLVSAVDNEVRQLLAVDGR 670 (793)
Q Consensus 597 ~sv~fspdg~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~~------~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~ 670 (793)
.++- +-++ ..+++|+.|.+|++||+|-..+..+....-|. .+.+++..|.|+.|++|-.|....+||++.++
T Consensus 187 laly-swn~-~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r 264 (350)
T KOG0641|consen 187 LALY-SWNG-AMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGR 264 (350)
T ss_pred EEEE-EecC-cEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCc
Confidence 8873 2245 79999999999999999987544333222222 23359999999999999999999999999999
Q ss_pred EEEEEeeecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCCCCccceeeeccCCccccCCccE
Q 003822 671 VHLNFGITATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSI 750 (793)
Q Consensus 671 ~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V 750 (793)
+++.+. .+...+.++.|+|... |+++++.|..| ++-|++.. +.. . +.--....|...+
T Consensus 265 ~iq~f~---phsadir~vrfsp~a~-yllt~syd~~i-kltdlqgd-la~-------e---------l~~~vv~ehkdk~ 322 (350)
T KOG0641|consen 265 MIQRFH---PHSADIRCVRFSPGAH-YLLTCSYDMKI-KLTDLQGD-LAH-------E---------LPIMVVAEHKDKA 322 (350)
T ss_pred eeeeeC---CCccceeEEEeCCCce-EEEEecccceE-EEeecccc-hhh-------c---------CceEEEEeccCce
Confidence 998884 5778899999999887 99999999999 99887532 111 0 0001111355689
Q ss_pred EEEEEcCCCCceeeEeeEEEeCCCcEEEEcCC
Q 003822 751 LAAYTRPSSKSEIVKVNLLASTDHCDKECSHG 782 (793)
Q Consensus 751 ~sva~~P~~~~~iv~~~ltaS~Dg~VkvW~~~ 782 (793)
..+.|||.. -.+ ++.|+|.++-+|.++
T Consensus 323 i~~rwh~~d-~sf----isssadkt~tlwa~~ 349 (350)
T KOG0641|consen 323 IQCRWHPQD-FSF----ISSSADKTATLWALN 349 (350)
T ss_pred EEEEecCcc-cee----eeccCcceEEEeccC
Confidence 999999963 223 367899999999875
No 62
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=1.6e-23 Score=237.70 Aligned_cols=259 Identities=17% Similarity=0.240 Sum_probs=204.9
Q ss_pred CCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCC------------------------------------cccccc
Q 003822 496 GAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPP------------------------------------SIRGMH 539 (793)
Q Consensus 496 ~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~------------------------------------~~~~~~ 539 (793)
.|.++|+++.|+ ++|++||+||.||.|+||.+...+. ......
T Consensus 265 ah~gaIw~mKFS-~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~ 343 (712)
T KOG0283|consen 265 AHKGAIWAMKFS-HDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGS 343 (712)
T ss_pred ccCCcEEEEEeC-CCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccccc
Confidence 799999999998 8999999999999999999865100 000000
Q ss_pred cCC--------------ce-eEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCC
Q 003822 540 YGA--------------GT-VTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNH 604 (793)
Q Consensus 540 ~~~--------------~~-~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspd 604 (793)
... .. ....|.+.|.++.| +.+++|++++.|.+|++|++....++..|. |.+.|+||+|+|.
T Consensus 344 ~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSW-SKn~fLLSSSMDKTVRLWh~~~~~CL~~F~--HndfVTcVaFnPv 420 (712)
T KOG0283|consen 344 QSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSW-SKNNFLLSSSMDKTVRLWHPGRKECLKVFS--HNDFVTCVAFNPV 420 (712)
T ss_pred CCccccCCCccccccccchhhhhccchhheeccc-ccCCeeEeccccccEEeecCCCcceeeEEe--cCCeeEEEEeccc
Confidence 000 00 01246678999999 688999999999999999999999999998 9999999999998
Q ss_pred CCcEEEEEeCCCeEEEEECCCCCccceEEccCCCCeEEEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecC----
Q 003822 605 SPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITAT---- 680 (793)
Q Consensus 605 g~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~---- 680 (793)
+.++|++|+-||.||||++...+. +.-...+.-+++++|.|||++.++|+.+|.+++|++...+....+.+...
T Consensus 421 DDryFiSGSLD~KvRiWsI~d~~V--v~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk 498 (712)
T KOG0283|consen 421 DDRYFISGSLDGKVRLWSISDKKV--VDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKK 498 (712)
T ss_pred CCCcEeecccccceEEeecCcCee--EeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCcc
Confidence 889999999999999999987632 22223344555799999999999999999999999999888777766443
Q ss_pred -CCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCCCCccceeeeccCCccccCCccEEEEEEcCCC
Q 003822 681 -GSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSS 759 (793)
Q Consensus 681 -~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~ 759 (793)
.+..|+.+.|.|....-|+..+.|.+| ||+|..+.+++. .++|..+.. .=+.+.|..+
T Consensus 499 ~~~~rITG~Q~~p~~~~~vLVTSnDSrI-RI~d~~~~~lv~--KfKG~~n~~-----------------SQ~~Asfs~D- 557 (712)
T KOG0283|consen 499 KQGKRITGLQFFPGDPDEVLVTSNDSRI-RIYDGRDKDLVH--KFKGFRNTS-----------------SQISASFSSD- 557 (712)
T ss_pred ccCceeeeeEecCCCCCeEEEecCCCce-EEEeccchhhhh--hhcccccCC-----------------cceeeeEccC-
Confidence 123789999998776568888999999 999999999998 888876321 2345677774
Q ss_pred CceeeEeeEEEeCCCcEEEEcCCCCC
Q 003822 760 KSEIVKVNLLASTDHCDKECSHGQHS 785 (793)
Q Consensus 760 ~~~iv~~~ltaS~Dg~VkvW~~~~~~ 785 (793)
..-|+ .||.|..|.+|+.+...
T Consensus 558 gk~IV----s~seDs~VYiW~~~~~~ 579 (712)
T KOG0283|consen 558 GKHIV----SASEDSWVYIWKNDSFN 579 (712)
T ss_pred CCEEE----EeecCceEEEEeCCCCc
Confidence 44455 89999999999985554
No 63
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=4.9e-23 Score=228.65 Aligned_cols=280 Identities=13% Similarity=0.202 Sum_probs=226.5
Q ss_pred cceEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCC
Q 003822 454 FRPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPP 533 (793)
Q Consensus 454 ~~V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~ 533 (793)
|+..-+.|+. .+.||+|. ...|++|+..+++....... +...|+++.|+ ++|.+|++|..+|.|.|||....+.
T Consensus 178 fY~nlldWss--~n~laVal-g~~vylW~~~s~~v~~l~~~--~~~~vtSv~ws-~~G~~LavG~~~g~v~iwD~~~~k~ 251 (484)
T KOG0305|consen 178 FYLNLLDWSS--ANVLAVAL-GQSVYLWSASSGSVTELCSF--GEELVTSVKWS-PDGSHLAVGTSDGTVQIWDVKEQKK 251 (484)
T ss_pred HhhhHhhccc--CCeEEEEe-cceEEEEecCCCceEEeEec--CCCceEEEEEC-CCCCEEEEeecCCeEEEEehhhccc
Confidence 4455678886 34677765 45799999999986665553 37899999998 8999999999999999999987654
Q ss_pred cccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEE-EcccCCCCeEEEEEcCCCCcEEEEE
Q 003822 534 SIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQV-FADMHKEHINVVKFSNHSPSIFATS 612 (793)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~-~~~gh~~~V~sv~fspdg~~~LaTg 612 (793)
... . ...|...|.+++|+ +..+.+|+.++.|..+|++..+.... +. +|...|..++|++++ .++|+|
T Consensus 252 ~~~-~-------~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~-~H~qeVCgLkws~d~-~~lASG 319 (484)
T KOG0305|consen 252 TRT-L-------RGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQ-GHRQEVCGLKWSPDG-NQLASG 319 (484)
T ss_pred ccc-c-------cCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhh-cccceeeeeEECCCC-CeeccC
Confidence 211 1 11255779999995 66677777899999999998876655 55 799999999999999 999999
Q ss_pred eCCCeEEEEECCCCCccceEEccCCCCeE-EEEEec-CCCEEEEEe--CCCeEEEEEcCCCcEEEEEeeecCCCCCcEEE
Q 003822 613 SFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSP-DDHYLLVSA--VDNEVRQLLAVDGRVHLNFGITATGSSQNYTR 688 (793)
Q Consensus 613 s~Dg~IrIWDlrt~~~~~~~~l~~~~~~v-sv~fSp-dg~~Lasgs--~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~ 688 (793)
+.|+.+.|||.... .+.+.+..|...+ .++|+| ....||+|+ .|+.|++||..+|+.+..+. ...+|.++
T Consensus 320 gnDN~~~Iwd~~~~--~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vd----tgsQVcsL 393 (484)
T KOG0305|consen 320 GNDNVVFIWDGLSP--EPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVD----TGSQVCSL 393 (484)
T ss_pred CCccceEeccCCCc--cccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccc----cCCceeeE
Confidence 99999999999665 5566777787777 599999 566778865 59999999999999988874 56789999
Q ss_pred EEeeCCCeEEEEEe-CCCcEEEEEEcCCCcEEEeeeecCCCCCccceeeeccCCccccCCccEEEEEEcCCCCceeeEee
Q 003822 689 SYYLNGRDYIVSGS-CDEHVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKSEIVKVN 767 (793)
Q Consensus 689 afspdg~~~L~Sgs-~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~~~~iv~~~ 767 (793)
.|++..+.++.+.+ .++.| .||++.+-+++. .+.||. ..|..++++|+ ...|+
T Consensus 394 ~Wsk~~kEi~sthG~s~n~i-~lw~~ps~~~~~--~l~gH~-------------------~RVl~la~SPd-g~~i~--- 447 (484)
T KOG0305|consen 394 IWSKKYKELLSTHGYSENQI-TLWKYPSMKLVA--ELLGHT-------------------SRVLYLALSPD-GETIV--- 447 (484)
T ss_pred EEcCCCCEEEEecCCCCCcE-EEEeccccceee--eecCCc-------------------ceeEEEEECCC-CCEEE---
Confidence 99999986666644 45567 999999988888 777766 46999999996 55666
Q ss_pred EEEeCCCcEEEEcCCCC
Q 003822 768 LLASTDHCDKECSHGQH 784 (793)
Q Consensus 768 ltaS~Dg~VkvW~~~~~ 784 (793)
+|++|.++|+|+.-..
T Consensus 448 -t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 448 -TGAADETLRFWNLFDE 463 (484)
T ss_pred -EecccCcEEeccccCC
Confidence 8999999999997654
No 64
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.92 E-value=2.6e-24 Score=226.10 Aligned_cols=279 Identities=19% Similarity=0.251 Sum_probs=226.5
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCe--EEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCC
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENEN--IVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPP 533 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~--~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~ 533 (793)
|..+.|-+ +...|++|+.|..|++|++..++ .+.++. |..++|+++.|- +++..+++++.|+.+++|++...+.
T Consensus 178 v~~v~~l~-~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLa--Gs~g~it~~d~d-~~~~~~iAas~d~~~r~Wnvd~~r~ 253 (459)
T KOG0288|consen 178 VHDVEFLR-NSDTLATGGSDRIIKLWNVLGEKSELISTLA--GSLGNITSIDFD-SDNKHVIAASNDKNLRLWNVDSLRL 253 (459)
T ss_pred cceeEEcc-Ccchhhhcchhhhhhhhhcccchhhhhhhhh--ccCCCcceeeec-CCCceEEeecCCCceeeeeccchhh
Confidence 77889999 77899999999999999997666 444554 777899999996 7788999999999999999998654
Q ss_pred cccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEe
Q 003822 534 SIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSS 613 (793)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs 613 (793)
. ..+. .|.+.|+++.|......+++++.|.+|++||+..+.+.+++. ....+..|..++ ..+++|.
T Consensus 254 ~-~TLs--------GHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l--~~S~cnDI~~~~---~~~~SgH 319 (459)
T KOG0288|consen 254 R-HTLS--------GHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVL--PGSQCNDIVCSI---SDVISGH 319 (459)
T ss_pred h-hhhc--------ccccceeeehhhccccceeeccccchhhhhhhhhhheecccc--ccccccceEecc---eeeeecc
Confidence 1 1222 355789999997666668888899999999999999988876 456777887762 5799999
Q ss_pred CCCeEEEEECCCCCccceEEccCCCCeEEEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeec-CCCCCcEEEEEee
Q 003822 614 FDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITA-TGSSQNYTRSYYL 692 (793)
Q Consensus 614 ~Dg~IrIWDlrt~~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~-~~~~~v~s~afsp 692 (793)
.|++||+||.++. .++...+.+..+.++..+++|..|++.+.|..+.+.|+++......+.-.. ........+.|+|
T Consensus 320 ~DkkvRfwD~Rs~--~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSp 397 (459)
T KOG0288|consen 320 FDKKVRFWDIRSA--DKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSP 397 (459)
T ss_pred cccceEEEeccCC--ceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECC
Confidence 9999999999998 445666666677789999999999999999999999999988877775321 1123467788999
Q ss_pred CCCeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCCCCccceeeeccCCccccCCccEEEEEEcCCCCceeeEeeEEEeC
Q 003822 693 NGRDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKSEIVKVNLLAST 772 (793)
Q Consensus 693 dg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~~~~iv~~~ltaS~ 772 (793)
++. |+++||.||.| +||++.+|++.. .+....+ +..|++++|+|.+. -++ .++.
T Consensus 398 d~~-YvaAGS~dgsv-~iW~v~tgKlE~--~l~~s~s-----------------~~aI~s~~W~~sG~-~Ll----sadk 451 (459)
T KOG0288|consen 398 DGS-YVAAGSADGSV-YIWSVFTGKLEK--VLSLSTS-----------------NAAITSLSWNPSGS-GLL----SADK 451 (459)
T ss_pred CCc-eeeeccCCCcE-EEEEccCceEEE--EeccCCC-----------------CcceEEEEEcCCCc-hhh----cccC
Confidence 999 99999999999 999999999998 5555441 12699999999643 333 6888
Q ss_pred CCcEEEEc
Q 003822 773 DHCDKECS 780 (793)
Q Consensus 773 Dg~VkvW~ 780 (793)
++.+.+|.
T Consensus 452 ~~~v~lW~ 459 (459)
T KOG0288|consen 452 QKAVTLWT 459 (459)
T ss_pred CcceEecC
Confidence 99999995
No 65
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.92 E-value=5.4e-25 Score=226.14 Aligned_cols=235 Identities=19% Similarity=0.283 Sum_probs=189.1
Q ss_pred CCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEE
Q 003822 498 MNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALY 577 (793)
Q Consensus 498 ~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IW 577 (793)
...|.|+.| +...+++|..|.+|++||..+..+. . ....|.+.|.|+.+ +...+++|++|.+|++|
T Consensus 197 skgVYClQY---DD~kiVSGlrDnTikiWD~n~~~c~-~--------~L~GHtGSVLCLqy--d~rviisGSSDsTvrvW 262 (499)
T KOG0281|consen 197 SKGVYCLQY---DDEKIVSGLRDNTIKIWDKNSLECL-K--------ILTGHTGSVLCLQY--DERVIVSGSSDSTVRVW 262 (499)
T ss_pred CCceEEEEe---cchhhhcccccCceEEeccccHHHH-H--------hhhcCCCcEEeeec--cceEEEecCCCceEEEE
Confidence 467999997 5678999999999999999886542 1 23456678899988 55677778889999999
Q ss_pred ECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEECCCCCcc-ceEEccCCCCeEE-EEEecCCCEEEEE
Q 003822 578 DINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQ-PCYTASSSKGNVM-VCFSPDDHYLLVS 655 (793)
Q Consensus 578 Dl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~Dg~IrIWDlrt~~~~-~~~~l~~~~~~vs-v~fSpdg~~Lasg 655 (793)
|.++|+++.++- +|...|..+.|+. .+++|++.|.++.+||+...... ....+.||...+. +.|+ .++|+++
T Consensus 263 Dv~tge~l~tli-hHceaVLhlrf~n---g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsA 336 (499)
T KOG0281|consen 263 DVNTGEPLNTLI-HHCEAVLHLRFSN---GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSA 336 (499)
T ss_pred eccCCchhhHHh-hhcceeEEEEEeC---CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEe
Confidence 999999999998 6999999999973 48999999999999999876422 1233557777665 7775 5799999
Q ss_pred eCCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCCCCcccee
Q 003822 656 AVDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKGSGTSMFV 735 (793)
Q Consensus 656 s~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~v 735 (793)
+.|.+|++|++.+++.++++.+ |...+..+.| .|+ ++++||.|.+| ++||+..|.+++ .|+||+
T Consensus 337 SgDRTikvW~~st~efvRtl~g---HkRGIAClQY--r~r-lvVSGSSDntI-Rlwdi~~G~cLR--vLeGHE------- 400 (499)
T KOG0281|consen 337 SGDRTIKVWSTSTCEFVRTLNG---HKRGIACLQY--RDR-LVVSGSSDNTI-RLWDIECGACLR--VLEGHE------- 400 (499)
T ss_pred cCCceEEEEeccceeeehhhhc---ccccceehhc--cCe-EEEecCCCceE-EEEeccccHHHH--HHhchH-------
Confidence 9999999999999999998863 3333433332 445 99999999999 999999999999 898887
Q ss_pred eeccCCccccCCccEEEEEEcCCCCceeeEeeEEEeCCCcEEEEcCCCCCCC
Q 003822 736 QSLRGDPFRDFNMSILAAYTRPSSKSEIVKVNLLASTDHCDKECSHGQHSRP 787 (793)
Q Consensus 736 ~sl~g~~~~~h~~~V~sva~~P~~~~~iv~~~ltaS~Dg~VkvW~~~~~~~~ 787 (793)
.-|.++.|... .|+ +|.-||+||+|++...-.|
T Consensus 401 ------------eLvRciRFd~k---rIV----SGaYDGkikvWdl~aaldp 433 (499)
T KOG0281|consen 401 ------------ELVRCIRFDNK---RIV----SGAYDGKIKVWDLQAALDP 433 (499)
T ss_pred ------------HhhhheeecCc---eee----eccccceEEEEecccccCC
Confidence 35777888764 344 8999999999998665544
No 66
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.92 E-value=7.6e-23 Score=216.12 Aligned_cols=280 Identities=18% Similarity=0.244 Sum_probs=226.9
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcc
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSI 535 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~ 535 (793)
++++...| ....+++|+.|.++.++|...++.+..++ ||...|+.+.|+ ++...+++++.|..|+||.......
T Consensus 222 i~ald~~~-s~~~ilTGG~d~~av~~d~~s~q~l~~~~--Gh~kki~~v~~~-~~~~~v~~aSad~~i~vws~~~~s~-- 295 (506)
T KOG0289|consen 222 ITALDIIP-SSSKILTGGEDKTAVLFDKPSNQILATLK--GHTKKITSVKFH-KDLDTVITASADEIIRVWSVPLSSE-- 295 (506)
T ss_pred eeEEeecC-CCCcceecCCCCceEEEecchhhhhhhcc--CcceEEEEEEec-cchhheeecCCcceEEeeccccccC--
Confidence 77888888 47899999999999999999999998887 999999999998 7888999999999999999877543
Q ss_pred cccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcc-cCCCCeEEEEEcCCCCcEEEEEeC
Q 003822 536 RGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFAD-MHKEHINVVKFSNHSPSIFATSSF 614 (793)
Q Consensus 536 ~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~-gh~~~V~sv~fspdg~~~LaTgs~ 614 (793)
......|..+|+.+..+|.+.+++++++||+..+.|+++|..+..... ...-.+++.+||||| .+|.+|..
T Consensus 296 -------~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDg-Lifgtgt~ 367 (506)
T KOG0289|consen 296 -------PTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDG-LIFGTGTP 367 (506)
T ss_pred -------ccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCc-eEEeccCC
Confidence 123445678899999999999999999999999999999998887762 123458999999999 99999999
Q ss_pred CCeEEEEECCCCCccceEEccCCCCeEE-EEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeC
Q 003822 615 DQDVKLWDLRQKPIQPCYTASSSKGNVM-VCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLN 693 (793)
Q Consensus 615 Dg~IrIWDlrt~~~~~~~~l~~~~~~vs-v~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspd 693 (793)
||.|+|||+.++. .+..+++|.+.+. ++|+.+|-||++++.|+.|++||++..+...++... ....+.++.|.+.
T Consensus 368 d~~vkiwdlks~~--~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~--~~~~v~s~~fD~S 443 (506)
T KOG0289|consen 368 DGVVKIWDLKSQT--NVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLD--EKKEVNSLSFDQS 443 (506)
T ss_pred CceEEEEEcCCcc--ccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeecc--ccccceeEEEcCC
Confidence 9999999999874 5678889998885 999999999999999999999999998887777642 2336889999999
Q ss_pred CCeEEEEEeCCCcEEEEEEcC--CCcEEEeeeecCCCCCccceeeeccCCccccCCccEEEEEEcCCCCceeeEeeEEEe
Q 003822 694 GRDYIVSGSCDEHVVRICCAQ--TGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKSEIVKVNLLAS 771 (793)
Q Consensus 694 g~~~L~Sgs~Dg~II~IWDv~--tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~~~~iv~~~ltaS 771 (793)
|. |++.++.|=.| ++++-. ...++. .+ ..|.+..+.+.|.... . ...++|
T Consensus 444 Gt-~L~~~g~~l~V-y~~~k~~k~W~~~~--~~-------------------~~~sg~st~v~Fg~~a-q----~l~s~s 495 (506)
T KOG0289|consen 444 GT-YLGIAGSDLQV-YICKKKTKSWTEIK--EL-------------------ADHSGLSTGVRFGEHA-Q----YLASTS 495 (506)
T ss_pred CC-eEEeecceeEE-EEEecccccceeee--hh-------------------hhcccccceeeecccc-e----EEeecc
Confidence 99 99988777555 555432 233333 22 2344567777777641 2 223667
Q ss_pred CCCcEEEEcC
Q 003822 772 TDHCDKECSH 781 (793)
Q Consensus 772 ~Dg~VkvW~~ 781 (793)
.|..+++...
T Consensus 496 md~~l~~~a~ 505 (506)
T KOG0289|consen 496 MDAILRLYAL 505 (506)
T ss_pred chhheEEeec
Confidence 7888777653
No 67
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=2.4e-23 Score=231.16 Aligned_cols=242 Identities=16% Similarity=0.215 Sum_probs=209.3
Q ss_pred ceEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCc
Q 003822 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS 534 (793)
Q Consensus 455 ~V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~ 534 (793)
.|+++.|++ +|.+||+|..+|.|.|||..+.+.+..+.. .|...|-+++|. +..+.+|+.|+.|..+|++..+..
T Consensus 219 ~vtSv~ws~-~G~~LavG~~~g~v~iwD~~~~k~~~~~~~-~h~~rvg~laW~---~~~lssGsr~~~I~~~dvR~~~~~ 293 (484)
T KOG0305|consen 219 LVTSVKWSP-DGSHLAVGTSDGTVQIWDVKEQKKTRTLRG-SHASRVGSLAWN---SSVLSSGSRDGKILNHDVRISQHV 293 (484)
T ss_pred ceEEEEECC-CCCEEEEeecCCeEEEEehhhccccccccC-CcCceeEEEecc---CceEEEecCCCcEEEEEEecchhh
Confidence 499999999 999999999999999999998888887763 399999999995 678999999999999999987653
Q ss_pred ccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeC
Q 003822 535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSF 614 (793)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~ 614 (793)
... ...|...|+.+.|++++.++++||.|+.+.|||.....++..+. .|.+.|.+++|+|..+.+||+|+.
T Consensus 294 ~~~--------~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~-~H~aAVKA~awcP~q~~lLAsGGG 364 (484)
T KOG0305|consen 294 VST--------LQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFT-EHTAAVKALAWCPWQSGLLATGGG 364 (484)
T ss_pred hhh--------hhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEe-ccceeeeEeeeCCCccCceEEcCC
Confidence 332 22355789999999999999999999999999998888899998 599999999999998899999764
Q ss_pred --CCeEEEEECCCCCccceEEccCCCCeEEEEEecCCCEEEEEe--CCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEE
Q 003822 615 --DQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLVSA--VDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSY 690 (793)
Q Consensus 615 --Dg~IrIWDlrt~~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs--~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~af 690 (793)
|+.|++||..++ ..+........+.++.|++..+.|+++. .++.|.||+..+.+.+..+. .|...|..+++
T Consensus 365 s~D~~i~fwn~~~g--~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~---gH~~RVl~la~ 439 (484)
T KOG0305|consen 365 SADRCIKFWNTNTG--ARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELL---GHTSRVLYLAL 439 (484)
T ss_pred CcccEEEEEEcCCC--cEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeec---CCcceeEEEEE
Confidence 999999999988 4455555666777799999998877754 57899999999988877775 56778999999
Q ss_pred eeCCCeEEEEEeCCCcEEEEEEcCCCc
Q 003822 691 YLNGRDYIVSGSCDEHVVRICCAQTGR 717 (793)
Q Consensus 691 spdg~~~L~Sgs~Dg~II~IWDv~tg~ 717 (793)
+|||. .|++|+.|+++ ++|++-...
T Consensus 440 SPdg~-~i~t~a~DETl-rfw~~f~~~ 464 (484)
T KOG0305|consen 440 SPDGE-TIVTGAADETL-RFWNLFDER 464 (484)
T ss_pred CCCCC-EEEEecccCcE-EeccccCCC
Confidence 99999 99999999999 999987653
No 68
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.92 E-value=4.8e-23 Score=239.01 Aligned_cols=296 Identities=17% Similarity=0.190 Sum_probs=226.3
Q ss_pred ceEEEEEeCCCCCEEEEEe--CCCeEEEEECCC------------CeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcC
Q 003822 455 RPRQFEYHPSISCLMVFGT--LDGEIVVVNHEN------------ENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDN 520 (793)
Q Consensus 455 ~V~~vafsP~d~~~Lasgs--~DG~I~VWd~~t------------~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~D 520 (793)
+|.+++.|| ++..+|||+ .||.++||+.+. .+.+.+. ..|.+.|.|+.|+ ++|.+||+|++|
T Consensus 15 ~IfSIdv~p-dg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m--~~h~~sv~CVR~S-~dG~~lAsGSDD 90 (942)
T KOG0973|consen 15 SIFSIDVHP-DGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTM--DDHDGSVNCVRFS-PDGSYLASGSDD 90 (942)
T ss_pred eEEEEEecC-CceeEecCCccccccceeeccccccchhhhhhcccchhheee--ccccCceeEEEEC-CCCCeEeeccCc
Confidence 389999999 999999999 899999998752 1223333 3799999999998 899999999999
Q ss_pred CcEEEEEcCCC-CCccc-------ccccCCce-eEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEccc
Q 003822 521 GSLKLYDIRHM-PPSIR-------GMHYGAGT-VTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADM 591 (793)
Q Consensus 521 gtV~vWDl~~~-~~~~~-------~~~~~~~~-~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~g 591 (793)
+.|.+|+.... ....- ....+... ....|...|..++|+|++.++++++.|++|.+||..+.+.+.++. +
T Consensus 91 ~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~-~ 169 (942)
T KOG0973|consen 91 RLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLR-G 169 (942)
T ss_pred ceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeee-c
Confidence 99999998741 00000 01111111 223577889999999999999999999999999999999999999 7
Q ss_pred CCCCeEEEEEcCCCCcEEEEEeCCCeEEEEECCCCCccceEEc-----cCCCCeEEEEEecCCCEEEEEeC----CCeEE
Q 003822 592 HKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTA-----SSSKGNVMVCFSPDDHYLLVSAV----DNEVR 662 (793)
Q Consensus 592 h~~~V~sv~fspdg~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l-----~~~~~~vsv~fSpdg~~Lasgs~----Dg~I~ 662 (793)
|.+.|..+.|.|-| ++||+-+.|++|+||++.........+- .+......+.|||||++|+++.. -.++.
T Consensus 170 H~s~VKGvs~DP~G-ky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~ 248 (942)
T KOG0973|consen 170 HQSLVKGVSWDPIG-KYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIA 248 (942)
T ss_pred ccccccceEECCcc-CeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeE
Confidence 99999999999999 9999999999999999776433322221 12222336999999999998652 34788
Q ss_pred EEEcCCCcEEEEEeeecCCCCCcEEEEEeeC--------CCe--------EEEEEeCCCcEEEEEEcCCCcEEEeeeecC
Q 003822 663 QLLAVDGRVHLNFGITATGSSQNYTRSYYLN--------GRD--------YIVSGSCDEHVVRICCAQTGRRLRDISLEG 726 (793)
Q Consensus 663 IwDl~tg~~~~~l~~~~~~~~~v~s~afspd--------g~~--------~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~g 726 (793)
|.+-.+.+.-..+- +|+..+..+.|+|. |.. .+|+||.|+++ .||.....+++. ..
T Consensus 249 IieR~tWk~~~~Lv---GH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSl-SVW~T~~~RPl~--vi-- 320 (942)
T KOG0973|consen 249 IIERGTWKVDKDLV---GHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSL-SVWNTALPRPLF--VI-- 320 (942)
T ss_pred EEecCCceeeeeee---cCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccE-EEEecCCCCchh--hh--
Confidence 88887777666665 45667888888772 111 67889999999 999998888776 11
Q ss_pred CCCCccceeeeccCCccccCCccEEEEEEcCCCCceeeEeeEEEeCCCcEEEEcCCCCC
Q 003822 727 KGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKSEIVKVNLLASTDHCDKECSHGQHS 785 (793)
Q Consensus 727 h~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~~~~iv~~~ltaS~Dg~VkvW~~~~~~ 785 (793)
.. -++.+|..+.|+|++. .++ .+|-||+|.+.+..++.
T Consensus 321 ---------~~-------lf~~SI~DmsWspdG~-~Lf----acS~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 321 ---------HN-------LFNKSIVDMSWSPDGF-SLF----ACSLDGTVALIHFEEKE 358 (942)
T ss_pred ---------hh-------hhcCceeeeeEcCCCC-eEE----EEecCCeEEEEEcchHH
Confidence 11 2345799999999753 333 68999999998877653
No 69
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=8.5e-24 Score=210.27 Aligned_cols=239 Identities=17% Similarity=0.207 Sum_probs=194.9
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCC-CeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCc
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHEN-ENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS 534 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t-~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~ 534 (793)
+..++|++...+.+++++.||++++||... ..++..++ .|...|.++.|++..+..++++|.|++||+|+...++..
T Consensus 63 LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~k--EH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv 140 (311)
T KOG0277|consen 63 LFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFK--EHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSV 140 (311)
T ss_pred eeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHH--hhhhheEEeccccccceeEEeeccCCceEeecCCCCcce
Confidence 677999998889999999999999999643 23455555 899999999999888889999999999999998875542
Q ss_pred ccccccCCceeEe-cCCCCeEEEEEccCCCE-EEEEECCCcEEEEECCC-CcEEEEEcccCCCCeEEEEEcCCCCcEEEE
Q 003822 535 IRGMHYGAGTVTF-DEFDQLTSVHVNSMDEL-FLASGYSKNIALYDINS-GRRLQVFADMHKEHINVVKFSNHSPSIFAT 611 (793)
Q Consensus 535 ~~~~~~~~~~~~~-~~~~~V~sv~~s~~~~~-lla~g~Dg~I~IWDl~t-g~~l~~~~~gh~~~V~sv~fspdg~~~LaT 611 (793)
.+| .|..-|....|+|..+. +++++.|+++++||++. |+.+. +. .|...|.+..|+...+++++|
T Consensus 141 ----------~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~-i~-ah~~Eil~cdw~ky~~~vl~T 208 (311)
T KOG0277|consen 141 ----------QTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMS-IE-AHNSEILCCDWSKYNHNVLAT 208 (311)
T ss_pred ----------EeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeE-EE-eccceeEeecccccCCcEEEe
Confidence 223 24466899999997655 55556799999999997 44444 77 699999999999988899999
Q ss_pred EeCCCeEEEEECCCCCccceEEccCCCCeEE-EEEecC-CCEEEEEeCCCeEEEEEcCCCc-EEEEEeeecCCCCCcEEE
Q 003822 612 SSFDQDVKLWDLRQKPIQPCYTASSSKGNVM-VCFSPD-DHYLLVSAVDNEVRQLLAVDGR-VHLNFGITATGSSQNYTR 688 (793)
Q Consensus 612 gs~Dg~IrIWDlrt~~~~~~~~l~~~~~~vs-v~fSpd-g~~Lasgs~Dg~I~IwDl~tg~-~~~~l~~~~~~~~~v~s~ 688 (793)
|+.|+.||.||+|.-+ .+++.+.+|.-.+. +.|||. ...|++++.|-+++|||...+. .+.+.+ .|...+..+
T Consensus 209 g~vd~~vr~wDir~~r-~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~---~HtEFv~g~ 284 (311)
T KOG0277|consen 209 GGVDNLVRGWDIRNLR-TPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVD---HHTEFVCGL 284 (311)
T ss_pred cCCCceEEEEehhhcc-ccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhh---ccceEEecc
Confidence 9999999999999854 67888889888775 999996 4678999999999999987543 333333 355567778
Q ss_pred EEeeCCCeEEEEEeCCCcEEEEEEc
Q 003822 689 SYYLNGRDYIVSGSCDEHVVRICCA 713 (793)
Q Consensus 689 afspdg~~~L~Sgs~Dg~II~IWDv 713 (793)
.|++-...++|+.+.|+.+ +||+.
T Consensus 285 Dws~~~~~~vAs~gWDe~l-~Vw~p 308 (311)
T KOG0277|consen 285 DWSLFDPGQVASTGWDELL-YVWNP 308 (311)
T ss_pred ccccccCceeeecccccce-eeecc
Confidence 8888666699999999999 99974
No 70
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.91 E-value=9.6e-23 Score=227.07 Aligned_cols=288 Identities=16% Similarity=0.224 Sum_probs=236.5
Q ss_pred eeeeeccCCCCCCCCcccceEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEE
Q 003822 437 LHTLTVSGNHMGDENRSFRPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIA 516 (793)
Q Consensus 437 ~~~l~~~g~~~~~~~~~~~V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Las 516 (793)
++.+...||.. .|++++++. +...+++|+ .+.++||+..+.+++.++.. +-+.+..|. |.++++++
T Consensus 364 ~~~i~~~GHR~-------dVRsl~vS~-d~~~~~Sga-~~SikiWn~~t~kciRTi~~----~y~l~~~Fv-pgd~~Iv~ 429 (888)
T KOG0306|consen 364 TSNIEIGGHRS-------DVRSLCVSS-DSILLASGA-GESIKIWNRDTLKCIRTITC----GYILASKFV-PGDRYIVL 429 (888)
T ss_pred cceeeeccchh-------heeEEEeec-CceeeeecC-CCcEEEEEccCcceeEEecc----ccEEEEEec-CCCceEEE
Confidence 34455566654 299999999 766666665 67899999999999999863 378889998 78899999
Q ss_pred EEcCCcEEEEEcCCCCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCC-----CcEE------
Q 003822 517 GSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINS-----GRRL------ 585 (793)
Q Consensus 517 gs~DgtV~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~t-----g~~l------ 585 (793)
|...|.+.+||+.+.... .. .-.|.+.|++++..|++..++++|.|.+|++||..- |...
T Consensus 430 G~k~Gel~vfdlaS~~l~-Et--------i~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~ 500 (888)
T KOG0306|consen 430 GTKNGELQVFDLASASLV-ET--------IRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLK 500 (888)
T ss_pred eccCCceEEEEeehhhhh-hh--------hhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeec
Confidence 999999999999875441 11 124668899999999999999999999999999752 2111
Q ss_pred --EEEcccCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEECCCCCccceEEccCCCCeE-EEEEecCCCEEEEEeCCCeEE
Q 003822 586 --QVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLVSAVDNEVR 662 (793)
Q Consensus 586 --~~~~~gh~~~V~sv~fspdg~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~~~~v-sv~fSpdg~~Lasgs~Dg~I~ 662 (793)
+++. -...|.|+.++||| .+||.+--|.+|+||-+.+- .-...+-||.-++ ++..|||++.+++|+.|..|+
T Consensus 501 ~~rtLe--l~ddvL~v~~Spdg-k~LaVsLLdnTVkVyflDtl--KFflsLYGHkLPV~smDIS~DSklivTgSADKnVK 575 (888)
T KOG0306|consen 501 HTRTLE--LEDDVLCVSVSPDG-KLLAVSLLDNTVKVYFLDTL--KFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVK 575 (888)
T ss_pred cceEEe--ccccEEEEEEcCCC-cEEEEEeccCeEEEEEecce--eeeeeecccccceeEEeccCCcCeEEeccCCCceE
Confidence 1222 45789999999999 89999999999999999886 3345566777554 799999999999999999999
Q ss_pred EEEcCCCcEEEEEeeecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCCCCccceeeeccCCc
Q 003822 663 QLLAVDGRVHLNFGITATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDP 742 (793)
Q Consensus 663 IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~ 742 (793)
+|-+.-|.++..+- .|...+..+.|-|... ++.++|.|+.| +-||-..-+.++ ++.||.
T Consensus 576 iWGLdFGDCHKS~f---AHdDSvm~V~F~P~~~-~FFt~gKD~kv-KqWDg~kFe~iq--~L~~H~-------------- 634 (888)
T KOG0306|consen 576 IWGLDFGDCHKSFF---AHDDSVMSVQFLPKTH-LFFTCGKDGKV-KQWDGEKFEEIQ--KLDGHH-------------- 634 (888)
T ss_pred Eeccccchhhhhhh---cccCceeEEEEcccce-eEEEecCcceE-Eeechhhhhhhe--eeccch--------------
Confidence 99999999988884 5778899999999877 99999999999 999999888888 676665
Q ss_pred cccCCccEEEEEEcCCCCceeeEeeEEEeCCCcEEEEcCCC
Q 003822 743 FRDFNMSILAAYTRPSSKSEIVKVNLLASTDHCDKECSHGQ 783 (793)
Q Consensus 743 ~~~h~~~V~sva~~P~~~~~iv~~~ltaS~Dg~VkvW~~~~ 783 (793)
..|++++..|++ ..++ ++|.|.+||+|....
T Consensus 635 -----~ev~cLav~~~G-~~vv----s~shD~sIRlwE~td 665 (888)
T KOG0306|consen 635 -----SEVWCLAVSPNG-SFVV----SSSHDKSIRLWERTD 665 (888)
T ss_pred -----heeeeeEEcCCC-CeEE----eccCCceeEeeeccC
Confidence 579999999964 4444 789999999999755
No 71
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.91 E-value=8.5e-23 Score=234.23 Aligned_cols=236 Identities=18% Similarity=0.272 Sum_probs=201.2
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcc
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSI 535 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~ 535 (793)
|+++++.. .+.++++|+.|.+++|||..+|++...+. +|.+.|.++.. .+..+++|+.|.+|++|+++++..
T Consensus 252 V~~l~~~~-~~~~lvsgS~D~t~rvWd~~sg~C~~~l~--gh~stv~~~~~---~~~~~~sgs~D~tVkVW~v~n~~~-- 323 (537)
T KOG0274|consen 252 VWGLAFPS-GGDKLVSGSTDKTERVWDCSTGECTHSLQ--GHTSSVRCLTI---DPFLLVSGSRDNTVKVWDVTNGAC-- 323 (537)
T ss_pred ceeEEEec-CCCEEEEEecCCcEEeEecCCCcEEEEec--CCCceEEEEEc---cCceEeeccCCceEEEEeccCcce--
Confidence 89999987 78999999999999999999999999998 89999999884 567889999999999999997665
Q ss_pred cccccCCceeEec-CCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeC
Q 003822 536 RGMHYGAGTVTFD-EFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSF 614 (793)
Q Consensus 536 ~~~~~~~~~~~~~-~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~ 614 (793)
..... |..+|.++..+ ++.+++|+.|++|++||+.++++++++. +|...|+++.+.+. ..+++|+.
T Consensus 324 --------l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~-gH~~~V~sl~~~~~--~~~~Sgs~ 390 (537)
T KOG0274|consen 324 --------LNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLS-GHTGRVYSLIVDSE--NRLLSGSL 390 (537)
T ss_pred --------EEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeec-CCcceEEEEEecCc--ceEEeeee
Confidence 22233 67899999984 8999999999999999999999999999 69999999988764 58999999
Q ss_pred CCeEEEEECCCCCccceEEccCCCCeEEEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCC
Q 003822 615 DQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNG 694 (793)
Q Consensus 615 Dg~IrIWDlrt~~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg 694 (793)
|++|++||+++.. .++.++.+|...+. .....+++|++++.|++|++||..++++++.+... +...+..+++.
T Consensus 391 D~~IkvWdl~~~~-~c~~tl~~h~~~v~-~l~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~--~~~~v~~l~~~--- 463 (537)
T KOG0274|consen 391 DTTIKVWDLRTKR-KCIHTLQGHTSLVS-SLLLRDNFLVSSSADGTIKLWDAEEGECLRTLEGR--HVGGVSALALG--- 463 (537)
T ss_pred ccceEeecCCchh-hhhhhhcCCccccc-ccccccceeEeccccccEEEeecccCceeeeeccC--CcccEEEeecC---
Confidence 9999999999973 44566777777663 34446899999999999999999999999988642 33445555544
Q ss_pred CeEEEEEeCCCcEEEEEEcCCCcEEE
Q 003822 695 RDYIVSGSCDEHVVRICCAQTGRRLR 720 (793)
Q Consensus 695 ~~~L~Sgs~Dg~II~IWDv~tg~~l~ 720 (793)
...+++++.||++ ++||+++++..+
T Consensus 464 ~~~il~s~~~~~~-~l~dl~~~~~~~ 488 (537)
T KOG0274|consen 464 KEEILCSSDDGSV-KLWDLRSGTLIR 488 (537)
T ss_pred cceEEEEecCCee-EEEecccCchhh
Confidence 3379999999999 999999999998
No 72
>PTZ00421 coronin; Provisional
Probab=99.91 E-value=4.1e-22 Score=227.98 Aligned_cols=241 Identities=14% Similarity=0.173 Sum_probs=180.4
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCe-------EEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEc
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENEN-------IVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDI 528 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~-------~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl 528 (793)
|++++|+|.++.+|++|+.||+|++||+.++. .+..+. +|...|.+++|+|..+++|++|+.|++|++||+
T Consensus 78 V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~--gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl 155 (493)
T PTZ00421 78 IIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQ--GHTKKVGIVSFHPSAMNVLASAGADMVVNVWDV 155 (493)
T ss_pred EEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEec--CCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEEC
Confidence 99999999778899999999999999997653 334444 899999999998555689999999999999999
Q ss_pred CCCCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCC-eEEEEEcCCCCc
Q 003822 529 RHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEH-INVVKFSNHSPS 607 (793)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~-V~sv~fspdg~~ 607 (793)
++++... ....|...|.+++|+|++..+++++.|++|++||+++++.+..+. +|.+. +..+.|.+++ .
T Consensus 156 ~tg~~~~---------~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~-~H~~~~~~~~~w~~~~-~ 224 (493)
T PTZ00421 156 ERGKAVE---------VIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVE-AHASAKSQRCLWAKRK-D 224 (493)
T ss_pred CCCeEEE---------EEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEe-cCCCCcceEEEEcCCC-C
Confidence 9865311 112355789999999999999999999999999999999999888 68765 4567899887 4
Q ss_pred EEEEEe----CCCeEEEEECCCCCccceEEc--cCCCCeEEEEEecCCCEEEEEe-CCCeEEEEEcCCCcEEEEEeeecC
Q 003822 608 IFATSS----FDQDVKLWDLRQKPIQPCYTA--SSSKGNVMVCFSPDDHYLLVSA-VDNEVRQLLAVDGRVHLNFGITAT 680 (793)
Q Consensus 608 ~LaTgs----~Dg~IrIWDlrt~~~~~~~~l--~~~~~~vsv~fSpdg~~Lasgs-~Dg~I~IwDl~tg~~~~~l~~~~~ 680 (793)
.+++++ .|+.|++||+++... +.... ..........|++++++|++|+ .|+.|++||+.+++.+..... .
T Consensus 225 ~ivt~G~s~s~Dr~VklWDlr~~~~-p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~--~ 301 (493)
T PTZ00421 225 LIITLGCSKSQQRQIMLWDTRKMAS-PYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSY--S 301 (493)
T ss_pred eEEEEecCCCCCCeEEEEeCCCCCC-ceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeec--c
Confidence 555543 479999999987532 22222 2222333478999999999887 599999999999987766543 2
Q ss_pred CCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCC
Q 003822 681 GSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTG 716 (793)
Q Consensus 681 ~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg 716 (793)
.......++|.|.-. + -..+..|.|+|.+...
T Consensus 302 s~~~~~g~~~~pk~~---~-dv~~~Ei~r~~~l~~~ 333 (493)
T PTZ00421 302 SVEPHKGLCMMPKWS---L-DTRKCEIARFYALTYH 333 (493)
T ss_pred CCCCCcceEeccccc---c-cccceeeeEEEEecCC
Confidence 333456677777532 1 1123334477776543
No 73
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=3.4e-22 Score=225.36 Aligned_cols=243 Identities=16% Similarity=0.254 Sum_probs=204.3
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcc
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSI 535 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~ 535 (793)
|+.++||| ...++++|++|-.|+||+..+.+++.++. ||-+-|..+.|+ +.-.+++++|.|-+|+||+..+.++.
T Consensus 54 VRgv~FH~-~qplFVSGGDDykIkVWnYk~rrclftL~--GHlDYVRt~~FH-heyPWIlSASDDQTIrIWNwqsr~~i- 128 (1202)
T KOG0292|consen 54 VRGVDFHP-TQPLFVSGGDDYKIKVWNYKTRRCLFTLL--GHLDYVRTVFFH-HEYPWILSASDDQTIRIWNWQSRKCI- 128 (1202)
T ss_pred cceeeecC-CCCeEEecCCccEEEEEecccceehhhhc--cccceeEEeecc-CCCceEEEccCCCeEEEEeccCCceE-
Confidence 89999999 88999999999999999999999887776 999999999998 56679999999999999999997762
Q ss_pred cccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCC--------C--------------------cEEEE
Q 003822 536 RGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINS--------G--------------------RRLQV 587 (793)
Q Consensus 536 ~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~t--------g--------------------~~l~~ 587 (793)
.+.-.|...|.|..|+|..+.+++++-|-+|++||+.. + ..++.
T Consensus 129 --------avltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~ 200 (1202)
T KOG0292|consen 129 --------AVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKH 200 (1202)
T ss_pred --------EEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeee
Confidence 22334557799999999999999999999999999862 1 01122
Q ss_pred EcccCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEECCCCCccceEEccCCCCeEE-EEEecCCCEEEEEeCCCeEEEEEc
Q 003822 588 FADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVM-VCFSPDDHYLLVSAVDNEVRQLLA 666 (793)
Q Consensus 588 ~~~gh~~~V~sv~fspdg~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~~~~vs-v~fSpdg~~Lasgs~Dg~I~IwDl 666 (793)
+.+||...|+-++|+|.- -++++|+.|+.|++|.+...+.-.+-+..+|.+.++ +-|+|....|++.+.|++|+|||+
T Consensus 201 VLEGHDRGVNwaAfhpTl-pliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm 279 (1202)
T KOG0292|consen 201 VLEGHDRGVNWAAFHPTL-PLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDM 279 (1202)
T ss_pred eecccccccceEEecCCc-ceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEec
Confidence 224899999999999998 599999999999999998765555666778887775 999999999999999999999999
Q ss_pred CCCcEEEEEeeecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcE
Q 003822 667 VDGRVHLNFGITATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRR 718 (793)
Q Consensus 667 ~tg~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~ 718 (793)
...+.++++. ..+...+.++.+|... +.+++.|+.+ .||.++.-++
T Consensus 280 ~kRt~v~tfr---rendRFW~laahP~lN--LfAAgHDsGm-~VFkleRErp 325 (1202)
T KOG0292|consen 280 TKRTSVQTFR---RENDRFWILAAHPELN--LFAAGHDSGM-IVFKLERERP 325 (1202)
T ss_pred ccccceeeee---ccCCeEEEEEecCCcc--eeeeecCCce-EEEEEcccCc
Confidence 9999988886 3556788999999987 5555566666 6888774443
No 74
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.91 E-value=5.1e-23 Score=219.47 Aligned_cols=254 Identities=22% Similarity=0.263 Sum_probs=202.0
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCe--------EEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEE
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENEN--------IVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYD 527 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~--------~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWD 527 (793)
|..+.+.|++..++|+++..+.|.|||..+.. ....+.+.+|.+.-++++|++.....+++|+.|++|.+||
T Consensus 127 VnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwd 206 (422)
T KOG0264|consen 127 VNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWD 206 (422)
T ss_pred chhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCcEEEEe
Confidence 77788999999999999999999999986422 2223344589888899999977778999999999999999
Q ss_pred cCCCCCcccccccCCceeEecCCCCeEEEEEccCCC-EEEEEECCCcEEEEECC--CCcEEEEEcccCCCCeEEEEEcCC
Q 003822 528 IRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDE-LFLASGYSKNIALYDIN--SGRRLQVFADMHKEHINVVKFSNH 604 (793)
Q Consensus 528 l~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~-~lla~g~Dg~I~IWDl~--tg~~l~~~~~gh~~~V~sv~fspd 604 (793)
+......-. ......+.-.|.+.|..++|++... .|.+++.|+.+.|||++ +.++..... +|.+.|+|++|+|.
T Consensus 207 i~~~~~~~~--~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~-ah~~~vn~~~fnp~ 283 (422)
T KOG0264|consen 207 INAESKEDK--VVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVK-AHSAEVNCVAFNPF 283 (422)
T ss_pred ccccccCCc--cccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCccccc-ccCCceeEEEeCCC
Confidence 987544211 0111233445678899999998765 55566789999999999 455566666 79999999999999
Q ss_pred CCcEEEEEeCCCeEEEEECCCCCccceEEccCCCCeE-EEEEecC-CCEEEEEeCCCeEEEEEcCCCcEE----------
Q 003822 605 SPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPD-DHYLLVSAVDNEVRQLLAVDGRVH---------- 672 (793)
Q Consensus 605 g~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~~~~v-sv~fSpd-g~~Lasgs~Dg~I~IwDl~tg~~~---------- 672 (793)
+..+|||||.|++|++||+|+-. .+..++.+|...+ .|.|||+ ...||+++.|+.+.|||+..-...
T Consensus 284 ~~~ilAT~S~D~tV~LwDlRnL~-~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgp 362 (422)
T KOG0264|consen 284 NEFILATGSADKTVALWDLRNLN-KPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGP 362 (422)
T ss_pred CCceEEeccCCCcEEEeechhcc-cCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCC
Confidence 98999999999999999999864 4778888888776 5999996 466788889999999998642211
Q ss_pred -EEEeeecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcC
Q 003822 673 -LNFGITATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQ 714 (793)
Q Consensus 673 -~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~ 714 (793)
..+-.+.+|...|....|.|.....|+|.+.|+.+ .||...
T Consensus 363 pEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~L-qIW~~s 404 (422)
T KOG0264|consen 363 PELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNIL-QIWQMA 404 (422)
T ss_pred cceeEEecCcccccccccCCCCCCeEEEEecCCceE-EEeecc
Confidence 12334566778899999999999889999999888 999864
No 75
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.90 E-value=4.7e-22 Score=201.12 Aligned_cols=289 Identities=20% Similarity=0.246 Sum_probs=214.9
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCe----------EEEEE---eccCCCCCEEEEEEeeCCCCEEEEEEcCCc
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENEN----------IVSYI---PSFGAMNSVLGLCWLKKYPSKLIAGSDNGS 522 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~----------~i~~l---~~~~h~~~V~sv~fs~~~g~~Lasgs~Dgt 522 (793)
|.++...|..++++++|+.||.|.|||+++.. .+..+ .-.+|.-.|.++.|.|.+...|.+++.|.+
T Consensus 46 vNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDht 125 (397)
T KOG4283|consen 46 VNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHT 125 (397)
T ss_pred cceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecccccce
Confidence 89999999999999999999999999997532 01111 113688899999999999999999999999
Q ss_pred EEEEEcCCCCCcccccccCCceeEecCCCCeEEEEEccCC--CEEEEEE-CCCcEEEEECCCCcEEEEEcccCCCCeEEE
Q 003822 523 LKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMD--ELFLASG-YSKNIALYDINSGRRLQVFADMHKEHINVV 599 (793)
Q Consensus 523 V~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~--~~lla~g-~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv 599 (793)
++|||..+.+. ...|...+.|++-+++|-. ..++++| .|-.|++.|+.+|..-+++. ||.+.|.+|
T Consensus 126 lKVWDtnTlQ~----------a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~Ls-GHr~~vlaV 194 (397)
T KOG4283|consen 126 LKVWDTNTLQE----------AVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLS-GHRDGVLAV 194 (397)
T ss_pred EEEeeccccee----------eEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeec-cccCceEEE
Confidence 99999998654 4556666778887877643 4556655 67899999999999999999 799999999
Q ss_pred EEcCCCCcEEEEEeCCCeEEEEECCCCC------------ccceEE-ccCCCCeE-EEEEecCCCEEEEEeCCCeEEEEE
Q 003822 600 KFSNHSPSIFATSSFDQDVKLWDLRQKP------------IQPCYT-ASSSKGNV-MVCFSPDDHYLLVSAVDNEVRQLL 665 (793)
Q Consensus 600 ~fspdg~~~LaTgs~Dg~IrIWDlrt~~------------~~~~~~-l~~~~~~v-sv~fSpdg~~Lasgs~Dg~I~IwD 665 (793)
.|+|.....|+||+.||.||+||+|... ..|+.. -..|.+.+ .++|+.+|.++++.+.|..+++|+
T Consensus 195 ~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn 274 (397)
T KOG4283|consen 195 EWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWN 274 (397)
T ss_pred EeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEee
Confidence 9999998899999999999999998641 111111 22333444 599999999999999999999999
Q ss_pred cCCCcEEEEEeeecCCC---CCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCCCCccceeeeccCCc
Q 003822 666 AVDGRVHLNFGITATGS---SQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDP 742 (793)
Q Consensus 666 l~tg~~~~~l~~~~~~~---~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~ 742 (793)
..+|+....-.+...+. .....+. +.+.. .++---.++.+ .++.+-+|..++ .+.+|.
T Consensus 275 ~~~G~ntl~~~g~~~~n~~~~~~~~~~-~~~s~-vfv~~p~~~~l-all~~~sgs~ir--~l~~h~-------------- 335 (397)
T KOG4283|consen 275 MESGRNTLREFGPIIHNQTTSFAVHIQ-SMDSD-VFVLFPNDGSL-ALLNLLEGSFVR--RLSTHL-------------- 335 (397)
T ss_pred cccCcccccccccccccccccceEEEe-ecccc-eEEEEecCCeE-EEEEccCceEEE--eeeccc--------------
Confidence 99886422111111110 1111112 33333 34444455777 888888888888 666653
Q ss_pred cccCCccEEEEEEcCCCCceeeEeeEEEeCCCcEEEEcCCCC
Q 003822 743 FRDFNMSILAAYTRPSSKSEIVKVNLLASTDHCDKECSHGQH 784 (793)
Q Consensus 743 ~~~h~~~V~sva~~P~~~~~iv~~~ltaS~Dg~VkvW~~~~~ 784 (793)
..|.+.++.|+. ...++|..|+.|..|.+...
T Consensus 336 -----k~i~c~~~~~~f-----q~~~tg~~d~ni~~w~p~l~ 367 (397)
T KOG4283|consen 336 -----KRINCAAYRPDF-----EQCFTGDMNGNIYMWSPALK 367 (397)
T ss_pred -----ceeeEEeecCch-----hhhhccccCCcccccccccc
Confidence 358888888863 24458899999999997443
No 76
>PTZ00420 coronin; Provisional
Probab=99.90 E-value=2.3e-21 Score=223.26 Aligned_cols=224 Identities=13% Similarity=0.200 Sum_probs=168.7
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCe--------EEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEE
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENEN--------IVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYD 527 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~--------~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWD 527 (793)
|.+++|+|.++.+||+|+.||+|+|||+.++. .+..+ .+|...|.+++|+|.....+++|+.|++|++||
T Consensus 77 V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L--~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWD 154 (568)
T PTZ00420 77 ILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCIL--KGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWD 154 (568)
T ss_pred EEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEe--ecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEE
Confidence 99999999658899999999999999997642 12233 389999999999843334568999999999999
Q ss_pred cCCCCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEE-----EEc
Q 003822 528 IRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVV-----KFS 602 (793)
Q Consensus 528 l~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv-----~fs 602 (793)
+++++.. ..+.+...|.+++|++++..+++++.|+.|+|||+++++.+.++. +|.+.+.+. .|+
T Consensus 155 l~tg~~~----------~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~-gH~g~~~s~~v~~~~fs 223 (568)
T PTZ00420 155 IENEKRA----------FQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFH-IHDGGKNTKNIWIDGLG 223 (568)
T ss_pred CCCCcEE----------EEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEe-cccCCceeEEEEeeeEc
Confidence 9986542 223345679999999999999888899999999999999999998 698765433 345
Q ss_pred CCCCcEEEEEeCCC----eEEEEECCC-CCccceEEccCCCCeEEEEEe-cCCCEEEEEeCCCeEEEEEcCCCcEEEEEe
Q 003822 603 NHSPSIFATSSFDQ----DVKLWDLRQ-KPIQPCYTASSSKGNVMVCFS-PDDHYLLVSAVDNEVRQLLAVDGRVHLNFG 676 (793)
Q Consensus 603 pdg~~~LaTgs~Dg----~IrIWDlrt-~~~~~~~~l~~~~~~vsv~fS-pdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~ 676 (793)
+++ .++++++.|+ +|+|||++. ..+.....+..+.+.+...|. ++|.++++|+.|+.|++|++..+.. ..+.
T Consensus 224 ~d~-~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~-~~l~ 301 (568)
T PTZ00420 224 GDD-NYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSI-RKVN 301 (568)
T ss_pred CCC-CEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCcE-Eeec
Confidence 777 6888877764 799999996 333333444444455444454 4588999999999999999988754 3332
Q ss_pred eecCCCCCcEEEEEeeCCC
Q 003822 677 ITATGSSQNYTRSYYLNGR 695 (793)
Q Consensus 677 ~~~~~~~~v~s~afspdg~ 695 (793)
.. ........++|.|...
T Consensus 302 ~~-~s~~p~~g~~f~Pkr~ 319 (568)
T PTZ00420 302 EY-KSCSPFRSFGFLPKQI 319 (568)
T ss_pred cc-ccCCCccceEEccccc
Confidence 11 2334566788888753
No 77
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.90 E-value=3.3e-22 Score=213.37 Aligned_cols=272 Identities=13% Similarity=0.186 Sum_probs=208.8
Q ss_pred CCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCccccc-ccCCceeEecCCCCeEEEEEccCC-CEEEEEECCCc
Q 003822 496 GAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGM-HYGAGTVTFDEFDQLTSVHVNSMD-ELFLASGYSKN 573 (793)
Q Consensus 496 ~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~~~~-~~~~~~~~~~~~~~V~sv~~s~~~-~~lla~g~Dg~ 573 (793)
.|.+.|+.+.+.|.+...+++++..+.|.|||..+........ ..........|...-++++|++.. +.+++++.|++
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~ 201 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHT 201 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCc
Confidence 7899999999999899999999999999999998754322211 111122333454557789998765 67777778999
Q ss_pred EEEEECCCCc-------EEEEEcccCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEECCCCCccceEEccCCCCeE-EEEE
Q 003822 574 IALYDINSGR-------RLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCF 645 (793)
Q Consensus 574 I~IWDl~tg~-------~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~~~~v-sv~f 645 (793)
|.+||+.... +...+. +|...|..++|++....+|++++.|+.+.|||+|++...+.....+|.+.+ +++|
T Consensus 202 i~lwdi~~~~~~~~~~~p~~~~~-~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~f 280 (422)
T KOG0264|consen 202 ICLWDINAESKEDKVVDPKTIFS-GHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAF 280 (422)
T ss_pred EEEEeccccccCCccccceEEee-cCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEe
Confidence 9999998532 334555 799999999999988899999999999999999975445556666776666 6999
Q ss_pred ec-CCCEEEEEeCCCeEEEEEcCCCc-EEEEEeeecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEEeee
Q 003822 646 SP-DDHYLLVSAVDNEVRQLLAVDGR-VHLNFGITATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRLRDIS 723 (793)
Q Consensus 646 Sp-dg~~Lasgs~Dg~I~IwDl~tg~-~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~ 723 (793)
+| ++..||+|+.|++|++||+++.+ .+.++. .|...+..+.|+|.....|+|++.|+++ .|||+..-...+ .
T Consensus 281 np~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e---~H~dev~~V~WSPh~etvLASSg~D~rl-~vWDls~ig~eq--~ 354 (422)
T KOG0264|consen 281 NPFNEFILATGSADKTVALWDLRNLNKPLHTFE---GHEDEVFQVEWSPHNETVLASSGTDRRL-NVWDLSRIGEEQ--S 354 (422)
T ss_pred CCCCCceEEeccCCCcEEEeechhcccCceecc---CCCcceEEEEeCCCCCceeEecccCCcE-EEEecccccccc--C
Confidence 99 56678889999999999999864 344443 6788999999999998899999999999 999997543332 1
Q ss_pred -ecCCCCCccceeeeccCCccccCCccEEEEEEcCCCCceeeEeeEEEeCCCcEEEEcCCCC
Q 003822 724 -LEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKSEIVKVNLLASTDHCDKECSHGQH 784 (793)
Q Consensus 724 -L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~~~~iv~~~ltaS~Dg~VkvW~~~~~ 784 (793)
-.+..+.+... -...||...|....|+|..+|.|. +++.|+.+.||.....
T Consensus 355 ~eda~dgppEll------F~HgGH~~kV~DfsWnp~ePW~I~----SvaeDN~LqIW~~s~~ 406 (422)
T KOG0264|consen 355 PEDAEDGPPELL------FIHGGHTAKVSDFSWNPNEPWTIA----SVAEDNILQIWQMAEN 406 (422)
T ss_pred hhhhccCCccee------EEecCcccccccccCCCCCCeEEE----EecCCceEEEeecccc
Confidence 11111111110 123478889999999999999999 9999999999998643
No 78
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.90 E-value=6.2e-23 Score=215.84 Aligned_cols=234 Identities=18% Similarity=0.267 Sum_probs=193.9
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcc
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSI 535 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~ 535 (793)
+++++|.+ ++..+++++.|+.+++|++...+...++. +|++.|+++.|. .....+++|+.|.+|+.||+....+..
T Consensus 222 it~~d~d~-~~~~~iAas~d~~~r~Wnvd~~r~~~TLs--GHtdkVt~ak~~-~~~~~vVsgs~DRtiK~WDl~k~~C~k 297 (459)
T KOG0288|consen 222 ITSIDFDS-DNKHVIAASNDKNLRLWNVDSLRLRHTLS--GHTDKVTAAKFK-LSHSRVVSGSADRTIKLWDLQKAYCSK 297 (459)
T ss_pred cceeeecC-CCceEEeecCCCceeeeeccchhhhhhhc--ccccceeeehhh-ccccceeeccccchhhhhhhhhhheec
Confidence 89999999 88999999999999999999999999888 899999999996 444459999999999999999866532
Q ss_pred cccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeCC
Q 003822 536 RGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFD 615 (793)
Q Consensus 536 ~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~D 615 (793)
..+. .+.+..|... ...++++-.|++|++||++++.+..... ++ +.|+++..++++ ..+.+++.|
T Consensus 298 t~l~----------~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~-~g-g~vtSl~ls~~g-~~lLsssRD 362 (459)
T KOG0288|consen 298 TVLP----------GSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVP-LG-GRVTSLDLSMDG-LELLSSSRD 362 (459)
T ss_pred cccc----------cccccceEec--ceeeeecccccceEEEeccCCceeeEee-cC-cceeeEeeccCC-eEEeeecCC
Confidence 2221 1344555552 4445555579999999999999999998 34 599999999999 788888999
Q ss_pred CeEEEEECCCCCccceEEccCCC---CeEEEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEee
Q 003822 616 QDVKLWDLRQKPIQPCYTASSSK---GNVMVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYL 692 (793)
Q Consensus 616 g~IrIWDlrt~~~~~~~~l~~~~---~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afsp 692 (793)
.++.+.|+++......+...+.. .+..+.|||++.|+++|+.||.|+||++.++++...+.... .+..+.+++|+|
T Consensus 363 dtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~-s~~aI~s~~W~~ 441 (459)
T KOG0288|consen 363 DTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLST-SNAAITSLSWNP 441 (459)
T ss_pred CceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCC-CCcceEEEEEcC
Confidence 99999999998766666554322 34469999999999999999999999999999987776422 223799999999
Q ss_pred CCCeEEEEEeCCCcEEEEE
Q 003822 693 NGRDYIVSGSCDEHVVRIC 711 (793)
Q Consensus 693 dg~~~L~Sgs~Dg~II~IW 711 (793)
.|. ++++++.++.+ .+|
T Consensus 442 sG~-~Llsadk~~~v-~lW 458 (459)
T KOG0288|consen 442 SGS-GLLSADKQKAV-TLW 458 (459)
T ss_pred CCc-hhhcccCCcce-Eec
Confidence 999 99999999999 999
No 79
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=2.5e-22 Score=215.52 Aligned_cols=239 Identities=16% Similarity=0.189 Sum_probs=199.3
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcc
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSI 535 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~ 535 (793)
|+++.|-. ||.++|+|...|.|+|+|..+...+..+. +|+.+|..+.|+|.++..+++|+.|+.+++||+.+... .
T Consensus 71 v~s~~fR~-DG~LlaaGD~sG~V~vfD~k~r~iLR~~~--ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v-~ 146 (487)
T KOG0310|consen 71 VYSVDFRS-DGRLLAAGDESGHVKVFDMKSRVILRQLY--AHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYV-Q 146 (487)
T ss_pred eeEEEeec-CCeEEEccCCcCcEEEeccccHHHHHHHh--hccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEE-E
Confidence 78899998 99999999999999999976655555555 89999999999988888999999999999999998652 1
Q ss_pred cccccCCceeEecCCCCeEEEEEccCCCE-EEEEECCCcEEEEECCCC-cEEEEEcccCCCCeEEEEEcCCCCcEEEEEe
Q 003822 536 RGMHYGAGTVTFDEFDQLTSVHVNSMDEL-FLASGYSKNIALYDINSG-RRLQVFADMHKEHINVVKFSNHSPSIFATSS 613 (793)
Q Consensus 536 ~~~~~~~~~~~~~~~~~V~sv~~s~~~~~-lla~g~Dg~I~IWDl~tg-~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs 613 (793)
. -...|.+.|.+.+++|..+. +++||+||.|++||+++. ..+..+. |..+|..+.+-|.| .++|+++
T Consensus 147 ~--------~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln--hg~pVe~vl~lpsg-s~iasAg 215 (487)
T KOG0310|consen 147 A--------ELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN--HGCPVESVLALPSG-SLIASAG 215 (487)
T ss_pred E--------EecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec--CCCceeeEEEcCCC-CEEEEcC
Confidence 1 12356688999999998775 555568999999999986 7777887 99999999999998 7888887
Q ss_pred CCCeEEEEECCCCCccceEEccCCCCeEEEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeC
Q 003822 614 FDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLN 693 (793)
Q Consensus 614 ~Dg~IrIWDlrt~~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspd 693 (793)
. ..|++||+-++.........++..++++++..++..|++|+-|+.+++||+.+.+.+..+. -...+.+++.+|+
T Consensus 216 G-n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~----~~~pvLsiavs~d 290 (487)
T KOG0310|consen 216 G-NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWK----YPGPVLSIAVSPD 290 (487)
T ss_pred C-CeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeee----cccceeeEEecCC
Confidence 4 4799999997754444444466777789999999999999999999999999999988886 4567999999999
Q ss_pred CCeEEEEEeCCCcEEEEEEcCCC
Q 003822 694 GRDYIVSGSCDEHVVRICCAQTG 716 (793)
Q Consensus 694 g~~~L~Sgs~Dg~II~IWDv~tg 716 (793)
++ .++.|..||.+ -+=+...+
T Consensus 291 d~-t~viGmsnGlv-~~rr~~~k 311 (487)
T KOG0310|consen 291 DQ-TVVIGMSNGLV-SIRRREVK 311 (487)
T ss_pred Cc-eEEEeccccee-eeehhhcc
Confidence 98 99999999988 44444333
No 80
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.90 E-value=6.2e-23 Score=219.73 Aligned_cols=240 Identities=11% Similarity=0.130 Sum_probs=200.3
Q ss_pred ceEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCc
Q 003822 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS 534 (793)
Q Consensus 455 ~V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~ 534 (793)
.|+.++|++ ++..+.+++.|+.|++||+++|+++..+.. ...++++.|.|.+.+.|++|+.|+.|+.||+++++..
T Consensus 260 ~Vrd~~~s~-~g~~fLS~sfD~~lKlwDtETG~~~~~f~~---~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvv 335 (503)
T KOG0282|consen 260 PVRDASFNN-CGTSFLSASFDRFLKLWDTETGQVLSRFHL---DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVV 335 (503)
T ss_pred hhhhhhccc-cCCeeeeeecceeeeeeccccceEEEEEec---CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHH
Confidence 488999999 999999999999999999999999988863 3578999998656699999999999999999997742
Q ss_pred ccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeC
Q 003822 535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSF 614 (793)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~ 614 (793)
... -.|-+.|..+.|-+.+.++++++.|++++||+.+.+-+++.+...+.....++..+|.+ .+++.-+.
T Consensus 336 -qeY--------d~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~-~~~~aQs~ 405 (503)
T KOG0282|consen 336 -QEY--------DRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNG-KWFAAQSM 405 (503)
T ss_pred -HHH--------HhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCC-Ceehhhcc
Confidence 111 12337799999999999999999999999999999887776654455567789999999 79999999
Q ss_pred CCeEEEEECCCC-CccceEEccCCC---CeEEEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEE
Q 003822 615 DQDVKLWDLRQK-PIQPCYTASSSK---GNVMVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSY 690 (793)
Q Consensus 615 Dg~IrIWDlrt~-~~~~~~~l~~~~---~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~af 690 (793)
|+.|.+|.+... +......+.+|. -.+.+.|||||++|++|+.||.+.+||.++-+++..+. .+...++.+.|
T Consensus 406 dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lk---ah~~~ci~v~w 482 (503)
T KOG0282|consen 406 DNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLK---AHDQPCIGVDW 482 (503)
T ss_pred CceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccc---cCCcceEEEEe
Confidence 999999987643 111122333443 23459999999999999999999999999999888886 45678899999
Q ss_pred eeCCCeEEEEEeCCCcEEEEEE
Q 003822 691 YLNGRDYIVSGSCDEHVVRICC 712 (793)
Q Consensus 691 spdg~~~L~Sgs~Dg~II~IWD 712 (793)
+|.....+||++.||.| ++||
T Consensus 483 HP~e~Skvat~~w~G~I-kiwd 503 (503)
T KOG0282|consen 483 HPVEPSKVATCGWDGLI-KIWD 503 (503)
T ss_pred cCCCcceeEecccCcee-EecC
Confidence 99888899999999999 9996
No 81
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.89 E-value=1.3e-21 Score=217.08 Aligned_cols=274 Identities=18% Similarity=0.258 Sum_probs=215.5
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEE-EEEeeCCCCEEEEEEcCCcEEEEEcCCCCCc
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLG-LCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS 534 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~s-v~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~ 534 (793)
|+.+++.+ +..+++|+.||++++|+...++.+......+|.+.|.. ++|.+.++..+++|+.|++|.+|......+.
T Consensus 17 Vr~v~~~~--~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~ 94 (745)
T KOG0301|consen 17 VRAVAVTD--GVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPL 94 (745)
T ss_pred hheeEecC--CeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCch
Confidence 66677665 45799999999999999877777665556678888887 8887555567999999999999999886542
Q ss_pred ccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeC
Q 003822 535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSF 614 (793)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~ 614 (793)
. ....|...|++++.. .++.+++|+.|.++++|-+. ++...+. +|+..|++++.-|++ .++||+.
T Consensus 95 -~--------~LkgH~snVC~ls~~-~~~~~iSgSWD~TakvW~~~--~l~~~l~-gH~asVWAv~~l~e~--~~vTgsa 159 (745)
T KOG0301|consen 95 -Y--------TLKGHKSNVCSLSIG-EDGTLISGSWDSTAKVWRIG--ELVYSLQ-GHTASVWAVASLPEN--TYVTGSA 159 (745)
T ss_pred -h--------hhhccccceeeeecC-CcCceEecccccceEEecch--hhhcccC-CcchheeeeeecCCC--cEEeccC
Confidence 1 123455778999874 44458999999999999654 4555577 799999999999986 8999999
Q ss_pred CCeEEEEECCCCCccceEEccCCCCeEE-EEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeC
Q 003822 615 DQDVKLWDLRQKPIQPCYTASSSKGNVM-VCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLN 693 (793)
Q Consensus 615 Dg~IrIWDlrt~~~~~~~~l~~~~~~vs-v~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspd 693 (793)
|.+|++|.-.+ .+.++.+|...+. +++-|++. +++++.||.|+.|++ +|..+.++. +|...+++++..++
T Consensus 160 DKtIklWk~~~----~l~tf~gHtD~VRgL~vl~~~~-flScsNDg~Ir~w~~-~ge~l~~~~---ghtn~vYsis~~~~ 230 (745)
T KOG0301|consen 160 DKTIKLWKGGT----LLKTFSGHTDCVRGLAVLDDSH-FLSCSNDGSIRLWDL-DGEVLLEMH---GHTNFVYSISMALS 230 (745)
T ss_pred cceeeeccCCc----hhhhhccchhheeeeEEecCCC-eEeecCCceEEEEec-cCceeeeee---ccceEEEEEEecCC
Confidence 99999998633 3456778888886 88887655 678888999999998 677766664 56778889987777
Q ss_pred CCeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCCCCccceeeeccCCccccCCccEEEEEEcCCCCceeeEeeEEEeCC
Q 003822 694 GRDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKSEIVKVNLLASTD 773 (793)
Q Consensus 694 g~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~~~~iv~~~ltaS~D 773 (793)
++ .++|+++|+++ +||+.. ++.+.+++.+. .|+++.+-++ ..|+ +|++|
T Consensus 231 ~~-~Ivs~gEDrtl-riW~~~--e~~q~I~lPtt---------------------siWsa~~L~N--gDIv----vg~SD 279 (745)
T KOG0301|consen 231 DG-LIVSTGEDRTL-RIWKKD--ECVQVITLPTT---------------------SIWSAKVLLN--GDIV----VGGSD 279 (745)
T ss_pred CC-eEEEecCCceE-EEeecC--ceEEEEecCcc---------------------ceEEEEEeeC--CCEE----EeccC
Confidence 77 99999999999 999876 66663344332 4888888775 3566 89999
Q ss_pred CcEEEEcCCCCCC
Q 003822 774 HCDKECSHGQHSR 786 (793)
Q Consensus 774 g~VkvW~~~~~~~ 786 (793)
|.||||+..+...
T Consensus 280 G~VrVfT~~k~R~ 292 (745)
T KOG0301|consen 280 GRVRVFTVDKDRK 292 (745)
T ss_pred ceEEEEEeccccc
Confidence 9999999876653
No 82
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=2.2e-22 Score=211.26 Aligned_cols=246 Identities=16% Similarity=0.238 Sum_probs=202.4
Q ss_pred ccCCCCCCCCcccceEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCC
Q 003822 442 VSGNHMGDENRSFRPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNG 521 (793)
Q Consensus 442 ~~g~~~~~~~~~~~V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~Dg 521 (793)
..||... |..+.|+| |.++|++++.|..+.+||+.+|.....++. +|...+.+++|. |+|..+++|+.|+
T Consensus 265 lvgh~~~-------V~yi~wSP-DdryLlaCg~~e~~~lwDv~tgd~~~~y~~-~~~~S~~sc~W~-pDg~~~V~Gs~dr 334 (519)
T KOG0293|consen 265 LVGHSQP-------VSYIMWSP-DDRYLLACGFDEVLSLWDVDTGDLRHLYPS-GLGFSVSSCAWC-PDGFRFVTGSPDR 334 (519)
T ss_pred eecccCc-------eEEEEECC-CCCeEEecCchHheeeccCCcchhhhhccc-CcCCCcceeEEc-cCCceeEecCCCC
Confidence 4566654 88999999 888999999999999999999999887764 467899999998 8999999999999
Q ss_pred cEEEEEcCCCCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEE
Q 003822 522 SLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKF 601 (793)
Q Consensus 522 tV~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~f 601 (793)
++..||++.... ..+.+ .....|.++++.++|.++++.+.|..|++++.++......+. ...+|++...
T Consensus 335 ~i~~wdlDgn~~-----~~W~g----vr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lis--e~~~its~~i 403 (519)
T KOG0293|consen 335 TIIMWDLDGNIL-----GNWEG----VRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLIS--EEQPITSFSI 403 (519)
T ss_pred cEEEecCCcchh-----hcccc----cccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhcccc--ccCceeEEEE
Confidence 999999987432 11111 111458999999999999999999999999999876665555 4578999999
Q ss_pred cCCCCcEEEEEeCCCeEEEEECCCCCccceEEccCCCC---eEEEEEec-CCCEEEEEeCCCeEEEEEcCCCcEEEEEee
Q 003822 602 SNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKG---NVMVCFSP-DDHYLLVSAVDNEVRQLLAVDGRVHLNFGI 677 (793)
Q Consensus 602 spdg~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~~~---~vsv~fSp-dg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~ 677 (793)
+.++ +++++.-.+..+++||+... ..+....||.. ++.-+|.- +..++++|+.|+.|+||+..+|+++..+.
T Consensus 404 S~d~-k~~LvnL~~qei~LWDl~e~--~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~Ls- 479 (519)
T KOG0293|consen 404 SKDG-KLALVNLQDQEIHLWDLEEN--KLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLS- 479 (519)
T ss_pred cCCC-cEEEEEcccCeeEEeecchh--hHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeec-
Confidence 9999 88888899999999999965 33444455543 23456654 55899999999999999999999998886
Q ss_pred ecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCC
Q 003822 678 TATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQT 715 (793)
Q Consensus 678 ~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~t 715 (793)
+|...+..++|+|.+...+||||+||+| |||....
T Consensus 480 --GHs~~vNcVswNP~~p~m~ASasDDgtI-RIWg~~~ 514 (519)
T KOG0293|consen 480 --GHSKTVNCVSWNPADPEMFASASDDGTI-RIWGPSD 514 (519)
T ss_pred --CCcceeeEEecCCCCHHHhhccCCCCeE-EEecCCc
Confidence 4667889999999999899999999999 9997653
No 83
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.89 E-value=2.5e-20 Score=199.03 Aligned_cols=273 Identities=14% Similarity=0.087 Sum_probs=196.7
Q ss_pred CEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEE-EEEEcCCcEEEEEcCCCCCcccccccCCcee
Q 003822 467 CLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKL-IAGSDNGSLKLYDIRHMPPSIRGMHYGAGTV 545 (793)
Q Consensus 467 ~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~L-asgs~DgtV~vWDl~~~~~~~~~~~~~~~~~ 545 (793)
.++++++.||.|++||+.+++.+..+. .+ ..+.+++|+ +++..+ ++++.++.|++||..+++...
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~--~~-~~~~~l~~~-~dg~~l~~~~~~~~~v~~~d~~~~~~~~---------- 67 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFP--VG-QRPRGITLS-KDGKLLYVCASDSDTIQVIDLATGEVIG---------- 67 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEE--CC-CCCCceEEC-CCCCEEEEEECCCCeEEEEECCCCcEEE----------
Confidence 578899999999999999998887776 33 346789997 677765 567788999999998765421
Q ss_pred EecCCCCeEEEEEccCCCEEEEEE-CCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeCCC-eEEEEEC
Q 003822 546 TFDEFDQLTSVHVNSMDELFLASG-YSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQ-DVKLWDL 623 (793)
Q Consensus 546 ~~~~~~~V~sv~~s~~~~~lla~g-~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~Dg-~IrIWDl 623 (793)
.+.....+..++++|+++.+++++ .++.+++||+.+++.+..+. +...+.+++|+|++ .++++++.++ .+.+||.
T Consensus 68 ~~~~~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~--~~~~~~~~~~~~dg-~~l~~~~~~~~~~~~~d~ 144 (300)
T TIGR03866 68 TLPSGPDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIP--VGVEPEGMAVSPDG-KIVVNTSETTNMAHFIDT 144 (300)
T ss_pred eccCCCCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEee--CCCCcceEEECCCC-CEEEEEecCCCeEEEEeC
Confidence 111122356788988888777665 58999999999988888776 33457889999999 7888877765 5778898
Q ss_pred CCCCccceEEccCCCCeEEEEEecCCCEEEEEe-CCCeEEEEEcCCCcEEEEEeeecC----CCCCcEEEEEeeCCCeEE
Q 003822 624 RQKPIQPCYTASSSKGNVMVCFSPDDHYLLVSA-VDNEVRQLLAVDGRVHLNFGITAT----GSSQNYTRSYYLNGRDYI 698 (793)
Q Consensus 624 rt~~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs-~Dg~I~IwDl~tg~~~~~l~~~~~----~~~~v~s~afspdg~~~L 698 (793)
+++.... .......+..++|+|+|+++++++ .++.|++||+.+++.+..+..... .......++|+|+++..+
T Consensus 145 ~~~~~~~--~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~ 222 (300)
T TIGR03866 145 KTYEIVD--NVLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAF 222 (300)
T ss_pred CCCeEEE--EEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEE
Confidence 8764322 222223445689999999886554 589999999999988776653211 112345688999999434
Q ss_pred EEEeCCCcEEEEEEcCCCcEEEeeeecCCCCCccceeeeccCCccccCCccEEEEEEcCCCCceeeEeeEEEeCCCcEEE
Q 003822 699 VSGSCDEHVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKSEIVKVNLLASTDHCDKE 778 (793)
Q Consensus 699 ~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~~~~iv~~~ltaS~Dg~Vkv 778 (793)
++.+.++++ .+||..+++.+. .+..+ ..+.+++|+|++...++ .++.+|.|++
T Consensus 223 ~~~~~~~~i-~v~d~~~~~~~~--~~~~~--------------------~~~~~~~~~~~g~~l~~----~~~~~~~i~v 275 (300)
T TIGR03866 223 VALGPANRV-AVVDAKTYEVLD--YLLVG--------------------QRVWQLAFTPDEKYLLT----TNGVSNDVSV 275 (300)
T ss_pred EEcCCCCeE-EEEECCCCcEEE--EEEeC--------------------CCcceEEECCCCCEEEE----EcCCCCeEEE
Confidence 555566778 999999988776 22111 14778999997543222 3356899999
Q ss_pred EcCCCCC
Q 003822 779 CSHGQHS 785 (793)
Q Consensus 779 W~~~~~~ 785 (793)
|+.....
T Consensus 276 ~d~~~~~ 282 (300)
T TIGR03866 276 IDVAALK 282 (300)
T ss_pred EECCCCc
Confidence 9987654
No 84
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.89 E-value=7.7e-23 Score=202.77 Aligned_cols=242 Identities=14% Similarity=0.203 Sum_probs=206.6
Q ss_pred ceEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCc
Q 003822 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS 534 (793)
Q Consensus 455 ~V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~ 534 (793)
+|+....+. +...-|+++.|-+-+|||.-+|..+..+ .|..-|.+++|+ .+.++|++|+.+..++|||++..+..
T Consensus 61 avw~~~l~~-na~~aasaaadftakvw~a~tgdelhsf---~hkhivk~~af~-~ds~~lltgg~ekllrvfdln~p~Ap 135 (334)
T KOG0278|consen 61 AVWSATLNK-NATRAASAAADFTAKVWDAVTGDELHSF---EHKHIVKAVAFS-QDSNYLLTGGQEKLLRVFDLNRPKAP 135 (334)
T ss_pred ceeeeecCc-hhhhhhhhcccchhhhhhhhhhhhhhhh---hhhheeeeEEec-ccchhhhccchHHHhhhhhccCCCCC
Confidence 488888888 7788899999999999999999988887 578889999997 78999999999999999999987664
Q ss_pred ccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeC
Q 003822 535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSF 614 (793)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~ 614 (793)
..... .|.+.|..+-|...+..++++++|++|++||.+++..++++. ...+|+++.++++| . ++|-..
T Consensus 136 p~E~~--------ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~--~~s~VtSlEvs~dG-~-ilTia~ 203 (334)
T KOG0278|consen 136 PKEIS--------GHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLE--FNSPVTSLEVSQDG-R-ILTIAY 203 (334)
T ss_pred chhhc--------CCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEe--cCCCCcceeeccCC-C-EEEEec
Confidence 44433 344678889998999999999999999999999999999998 77899999999999 4 455566
Q ss_pred CCeEEEEECCCCCccceEEccCCCCeEEEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCC
Q 003822 615 DQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNG 694 (793)
Q Consensus 615 Dg~IrIWDlrt~~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg 694 (793)
.+.|++||..+......+.++ ..+.+...+|+...+++|+.|..++.||..+|..+..+ ...+...|.++.|+|+|
T Consensus 204 gssV~Fwdaksf~~lKs~k~P--~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~--nkgh~gpVhcVrFSPdG 279 (334)
T KOG0278|consen 204 GSSVKFWDAKSFGLLKSYKMP--CNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSY--NKGHFGPVHCVRFSPDG 279 (334)
T ss_pred CceeEEeccccccceeeccCc--cccccccccCCCceEEecCcceEEEEEeccCCceeeec--ccCCCCceEEEEECCCC
Confidence 778999999987544444433 35557889999999999999999999999999987775 24677889999999999
Q ss_pred CeEEEEEeCCCcEEEEEEcCCCcEE
Q 003822 695 RDYIVSGSCDEHVVRICCAQTGRRL 719 (793)
Q Consensus 695 ~~~L~Sgs~Dg~II~IWDv~tg~~l 719 (793)
. ..++||.||+| ++|.+..++..
T Consensus 280 E-~yAsGSEDGTi-rlWQt~~~~~~ 302 (334)
T KOG0278|consen 280 E-LYASGSEDGTI-RLWQTTPGKTY 302 (334)
T ss_pred c-eeeccCCCceE-EEEEecCCCch
Confidence 9 99999999999 99998777654
No 85
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.89 E-value=9e-22 Score=205.33 Aligned_cols=247 Identities=19% Similarity=0.244 Sum_probs=195.0
Q ss_pred eEEEEEeCCC--CCEEEEEeCCCeEEEEECCCCeEEEEEe--ccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCC
Q 003822 456 PRQFEYHPSI--SCLMVFGTLDGEIVVVNHENENIVSYIP--SFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHM 531 (793)
Q Consensus 456 V~~vafsP~d--~~~Lasgs~DG~I~VWd~~t~~~i~~l~--~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~ 531 (793)
+.+++|.-.+ ...+++++.|.++++|.++.+..+.... ..||...|.+|... +++..+++|+.|.+|++|+....
T Consensus 147 ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~-~sgtr~~SgS~D~~lkiWs~~~~ 225 (423)
T KOG0313|consen 147 IKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVD-SSGTRFCSGSWDTMLKIWSVETD 225 (423)
T ss_pred eeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEec-CCCCeEEeecccceeeecccCCC
Confidence 6777776522 2369999999999999998776533222 23999999999975 79999999999999999994321
Q ss_pred CC-ccc--------------ccccCCceeE-ecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCC
Q 003822 532 PP-SIR--------------GMHYGAGTVT-FDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEH 595 (793)
Q Consensus 532 ~~-~~~--------------~~~~~~~~~~-~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~ 595 (793)
.. ... ......+.++ ..|..+|.+|.|. +...+++++.|.+|+.||+.+++...++. ....
T Consensus 226 ~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~-d~~v~yS~SwDHTIk~WDletg~~~~~~~--~~ks 302 (423)
T KOG0313|consen 226 EEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWS-DATVIYSVSWDHTIKVWDLETGGLKSTLT--TNKS 302 (423)
T ss_pred ccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEc-CCCceEeecccceEEEEEeecccceeeee--cCcc
Confidence 11 000 0011122233 3567889999995 48888899999999999999999999887 5678
Q ss_pred eEEEEEcCCCCcEEEEEeCCCeEEEEECCCCCc-cceEEccCCCCeEE-EEEecCC-CEEEEEeCCCeEEEEEcCCCc-E
Q 003822 596 INVVKFSNHSPSIFATSSFDQDVKLWDLRQKPI-QPCYTASSSKGNVM-VCFSPDD-HYLLVSAVDNEVRQLLAVDGR-V 671 (793)
Q Consensus 596 V~sv~fspdg~~~LaTgs~Dg~IrIWDlrt~~~-~~~~~l~~~~~~vs-v~fSpdg-~~Lasgs~Dg~I~IwDl~tg~-~ 671 (793)
++++.++|.. .+|++|+.|..+++||.|++.. .....+.+|...++ +.|+|.. ..|++|+.||++++||+++.+ +
T Consensus 303 l~~i~~~~~~-~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~p 381 (423)
T KOG0313|consen 303 LNCISYSPLS-KLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAP 381 (423)
T ss_pred eeEeeccccc-ceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCc
Confidence 9999999988 8999999999999999998743 34567788988886 9999965 567889999999999999887 7
Q ss_pred EEEEeeecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEc
Q 003822 672 HLNFGITATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCA 713 (793)
Q Consensus 672 ~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv 713 (793)
+..+. .|...+.++.|...+ +|++||.|.++ +|+..
T Consensus 382 lydI~---~h~DKvl~vdW~~~~--~IvSGGaD~~l-~i~~~ 417 (423)
T KOG0313|consen 382 LYDIA---GHNDKVLSVDWNEGG--LIVSGGADNKL-RIFKG 417 (423)
T ss_pred ceeec---cCCceEEEEeccCCc--eEEeccCcceE-EEecc
Confidence 77775 467788888887666 79999999999 99854
No 86
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=1.8e-22 Score=222.10 Aligned_cols=285 Identities=15% Similarity=0.181 Sum_probs=216.2
Q ss_pred EEEEeCCCCCEEEEEeCCCeEEEEECCCCeEE----EEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCC
Q 003822 458 QFEYHPSISCLMVFGTLDGEIVVVNHENENIV----SYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPP 533 (793)
Q Consensus 458 ~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i----~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~ 533 (793)
++..++..+++|.+|+.||.|++|++....-. .......|.+.|..+... .+++.|+++|.|-+|++|+...+..
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~-~~~~tlIS~SsDtTVK~W~~~~~~~ 107 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILC-GNGKTLISASSDTTVKVWNAHKDNT 107 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhh-cCCCceEEecCCceEEEeecccCcc
Confidence 34555557789999999999999998643221 122334799999998865 6788999999999999999987541
Q ss_pred -cccccccCCceeEecCCCCeEEEEE-ccCCCEEEEEECCCcEEEEECCCC--cEEEEEc--------ccCCCCeEEEEE
Q 003822 534 -SIRGMHYGAGTVTFDEFDQLTSVHV-NSMDELFLASGYSKNIALYDINSG--RRLQVFA--------DMHKEHINVVKF 601 (793)
Q Consensus 534 -~~~~~~~~~~~~~~~~~~~V~sv~~-s~~~~~lla~g~Dg~I~IWDl~tg--~~l~~~~--------~gh~~~V~sv~f 601 (793)
-. ...-.|.+.|.|+++ .++...+++||-|+.|.+||++++ +.+.++. .|+...|++++.
T Consensus 108 ~c~--------stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~ 179 (735)
T KOG0308|consen 108 FCM--------STIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAM 179 (735)
T ss_pred hhH--------hhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeec
Confidence 11 112346688999999 566677777788999999999987 3333332 268899999999
Q ss_pred cCCCCcEEEEEeCCCeEEEEECCCCCccceEEccCCCCeEE-EEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecC
Q 003822 602 SNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVM-VCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITAT 680 (793)
Q Consensus 602 spdg~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~~~~vs-v~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~ 680 (793)
++.| ..+++|+..+.+++||.++. ..+..+.+|...+. +..++||..+++++.||+|++||+...+++.++..
T Consensus 180 N~t~-t~ivsGgtek~lr~wDprt~--~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~v--- 253 (735)
T KOG0308|consen 180 NQTG-TIIVSGGTEKDLRLWDPRTC--KKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIV--- 253 (735)
T ss_pred CCcc-eEEEecCcccceEEeccccc--cceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEe---
Confidence 9999 89999999999999999998 55667779988875 88999999999999999999999999999999864
Q ss_pred CCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCCCCccceeeeccCCccccCCccEEEEEEcCCCC
Q 003822 681 GSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSK 760 (793)
Q Consensus 681 ~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~~ 760 (793)
|...++++..+|+=. .+++|+.||.| ..=|+.+..... ...+.. .+|..+..+. ..
T Consensus 254 H~e~VWaL~~~~sf~-~vYsG~rd~~i-~~Tdl~n~~~~t-lick~d--------------------aPv~~l~~~~-~~ 309 (735)
T KOG0308|consen 254 HKEGVWALQSSPSFT-HVYSGGRDGNI-YRTDLRNPAKST-LICKED--------------------APVLKLHLHE-HD 309 (735)
T ss_pred ccCceEEEeeCCCcc-eEEecCCCCcE-EecccCCchhhe-EeecCC--------------------Cchhhhhhcc-cc
Confidence 556699999898887 99999999999 888887743221 011111 1244444443 22
Q ss_pred ceeeEeeEEEeCCCcEEEEcCCCCC
Q 003822 761 SEIVKVNLLASTDHCDKECSHGQHS 785 (793)
Q Consensus 761 ~~iv~~~ltaS~Dg~VkvW~~~~~~ 785 (793)
+.++ +++.|+.|+-|......
T Consensus 310 ~~~W----vtTtds~I~rW~~~~~~ 330 (735)
T KOG0308|consen 310 NSVW----VTTTDSSIKRWKLEPDI 330 (735)
T ss_pred CCce----eeeccccceecCCcccc
Confidence 2334 77888888888865543
No 87
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.89 E-value=4.8e-21 Score=199.20 Aligned_cols=238 Identities=17% Similarity=0.201 Sum_probs=194.1
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcc
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSI 535 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~ 535 (793)
|+|+.|+. ++.+||||..+|.|+||...++.....+. .-...|.=+.|+ |.+..|++|+.||.+-+|.+.++..
T Consensus 109 Vt~~~Fsh-dgtlLATGdmsG~v~v~~~stg~~~~~~~--~e~~dieWl~WH-p~a~illAG~~DGsvWmw~ip~~~~-- 182 (399)
T KOG0296|consen 109 VTCCSFSH-DGTLLATGDMSGKVLVFKVSTGGEQWKLD--QEVEDIEWLKWH-PRAHILLAGSTDGSVWMWQIPSQAL-- 182 (399)
T ss_pred eEEEEEcc-CceEEEecCCCccEEEEEcccCceEEEee--cccCceEEEEec-ccccEEEeecCCCcEEEEECCCcce--
Confidence 99999999 99999999999999999999998887775 344667788998 5889999999999999999988422
Q ss_pred cccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEccc------------------------
Q 003822 536 RGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADM------------------------ 591 (793)
Q Consensus 536 ~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~g------------------------ 591 (793)
..+...|..++++=.|.|++.+++++..||+|++||..+++++.++...
T Consensus 183 -------~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~ 255 (399)
T KOG0296|consen 183 -------CKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEG 255 (399)
T ss_pred -------eeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCc
Confidence 1223345677888899999999999999999999999999988776510
Q ss_pred --------------------------CCCCeEEEEEcCCCC--cEEEEEeCCCeEEEEECCCCCccceEEccCCCCeEEE
Q 003822 592 --------------------------HKEHINVVKFSNHSP--SIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMV 643 (793)
Q Consensus 592 --------------------------h~~~V~sv~fspdg~--~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~~~~vsv 643 (793)
+...+.+|.+.|... .+.|+|+-||+|.|||+..... .+...+..+++.+
T Consensus 256 ~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~--R~~c~he~~V~~l 333 (399)
T KOG0296|consen 256 VACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTL--RHICEHEDGVTKL 333 (399)
T ss_pred cEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchh--heeccCCCceEEE
Confidence 011112222222211 4788999999999999988743 3455566678889
Q ss_pred EEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcC
Q 003822 644 CFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQ 714 (793)
Q Consensus 644 ~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~ 714 (793)
.|-+ ..+|++++.+|.|+.||.++|++..++. +|...+...+++|+.+ +++|+|.|++. +||++.
T Consensus 334 ~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~---GH~~~Il~f~ls~~~~-~vvT~s~D~~a-~VF~v~ 398 (399)
T KOG0296|consen 334 KWLN-TDYLLTACANGKVRQWDARTGQLKFTYT---GHQMGILDFALSPQKR-LVVTVSDDNTA-LVFEVP 398 (399)
T ss_pred EEcC-cchheeeccCceEEeeeccccceEEEEe---cCchheeEEEEcCCCc-EEEEecCCCeE-EEEecC
Confidence 9999 8899999999999999999999999886 4667899999999998 99999999999 999874
No 88
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.89 E-value=7.6e-22 Score=219.96 Aligned_cols=250 Identities=19% Similarity=0.249 Sum_probs=211.6
Q ss_pred ceEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCC-
Q 003822 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPP- 533 (793)
Q Consensus 455 ~V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~- 533 (793)
++.|..|-| .+.++++|...|.+.+||+.+...+.+++ +|.+.|++++-+ +++..+++||.|.+|++||+.-...
T Consensus 414 y~l~~~Fvp-gd~~Iv~G~k~Gel~vfdlaS~~l~Eti~--AHdgaIWsi~~~-pD~~g~vT~saDktVkfWdf~l~~~~ 489 (888)
T KOG0306|consen 414 YILASKFVP-GDRYIVLGTKNGELQVFDLASASLVETIR--AHDGAIWSISLS-PDNKGFVTGSADKTVKFWDFKLVVSV 489 (888)
T ss_pred cEEEEEecC-CCceEEEeccCCceEEEEeehhhhhhhhh--ccccceeeeeec-CCCCceEEecCCcEEEEEeEEEEecc
Confidence 488999999 88999999999999999999998888887 899999999976 8999999999999999999863211
Q ss_pred --cccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEE
Q 003822 534 --SIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFAT 611 (793)
Q Consensus 534 --~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaT 611 (793)
.......-....+..-.+.|.|+.++|++.+++++--|.+|+||-+.+-+-.-.+- ||.-||.|+..+|++ ++++|
T Consensus 490 ~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLY-GHkLPV~smDIS~DS-klivT 567 (888)
T KOG0306|consen 490 PGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLY-GHKLPVLSMDISPDS-KLIVT 567 (888)
T ss_pred CcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeec-ccccceeEEeccCCc-CeEEe
Confidence 00000000011234445789999999988888888899999999999999888888 799999999999999 89999
Q ss_pred EeCCCeEEEEECCCCCccceEEccCCCCe-EEEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEE
Q 003822 612 SSFDQDVKLWDLRQKPIQPCYTASSSKGN-VMVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSY 690 (793)
Q Consensus 612 gs~Dg~IrIWDlrt~~~~~~~~l~~~~~~-vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~af 690 (793)
||.|.+|+||-+.-+.+. ..+.+|... .++.|-|....+++++.|+.|+.||...-..++++. .|+..++.++.
T Consensus 568 gSADKnVKiWGLdFGDCH--KS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~---~H~~ev~cLav 642 (888)
T KOG0306|consen 568 GSADKNVKIWGLDFGDCH--KSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLD---GHHSEVWCLAV 642 (888)
T ss_pred ccCCCceEEeccccchhh--hhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeec---cchheeeeeEE
Confidence 999999999999888554 445566666 469999999999999999999999998888888886 57889999999
Q ss_pred eeCCCeEEEEEeCCCcEEEEEEcCCCc
Q 003822 691 YLNGRDYIVSGSCDEHVVRICCAQTGR 717 (793)
Q Consensus 691 spdg~~~L~Sgs~Dg~II~IWDv~tg~ 717 (793)
+|+|+ |++|+|.|.+| |+|.-....
T Consensus 643 ~~~G~-~vvs~shD~sI-RlwE~tde~ 667 (888)
T KOG0306|consen 643 SPNGS-FVVSSSHDKSI-RLWERTDEI 667 (888)
T ss_pred cCCCC-eEEeccCCcee-EeeeccCcc
Confidence 99999 99999999999 999865433
No 89
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=4.4e-21 Score=196.17 Aligned_cols=267 Identities=14% Similarity=0.223 Sum_probs=203.1
Q ss_pred EEEEeCCCeEEEEECC----------CCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCccccc
Q 003822 469 MVFGTLDGEIVVVNHE----------NENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGM 538 (793)
Q Consensus 469 Lasgs~DG~I~VWd~~----------t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~~~~ 538 (793)
+++|++...|.=+++. +......+....|.++|++++. ++.++|+||.|-+|+|||+.+....
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAV---s~~~~aSGssDetI~IYDm~k~~ql---- 76 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAV---SGPYVASGSSDETIHIYDMRKRKQL---- 76 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEe---cceeEeccCCCCcEEEEeccchhhh----
Confidence 5556665555555442 1223344555689999999995 5889999999999999999986542
Q ss_pred ccCCceeEecCCCCeEEEEEccCCC--EEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeCCC
Q 003822 539 HYGAGTVTFDEFDQLTSVHVNSMDE--LFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQ 616 (793)
Q Consensus 539 ~~~~~~~~~~~~~~V~sv~~s~~~~--~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~Dg 616 (793)
.....|.+.|+++.|.++-. .+++++.||.|.+|+......+.+++ +|.+.|+.++.+|.+ ++.++.+.|+
T Consensus 77 -----g~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK-~H~~~Vt~lsiHPS~-KLALsVg~D~ 149 (362)
T KOG0294|consen 77 -----GILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLK-AHKGQVTDLSIHPSG-KLALSVGGDQ 149 (362)
T ss_pred -----cceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeec-ccccccceeEecCCC-ceEEEEcCCc
Confidence 12345568899999987765 89999999999999999999999999 799999999999999 8889999999
Q ss_pred eEEEEECCCCCccceEEccCCCCeEEEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCCCe
Q 003822 617 DVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNGRD 696 (793)
Q Consensus 617 ~IrIWDlrt~~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg~~ 696 (793)
.+++||+-.++...+..+.. ....+.|+|.|.+++.+..+ .|-+|.+.+......+.. ...+.++.|- ++.
T Consensus 150 ~lr~WNLV~Gr~a~v~~L~~--~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~----~~r~l~~~~l-~~~- 220 (362)
T KOG0294|consen 150 VLRTWNLVRGRVAFVLNLKN--KATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREIEN----PKRILCATFL-DGS- 220 (362)
T ss_pred eeeeehhhcCccceeeccCC--cceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhhhc----cccceeeeec-CCc-
Confidence 99999998886554444433 44459999999999988865 689999988776555532 1223333333 333
Q ss_pred EEEEEeCCCcEEEEEEcCCCcEEEeeeecCCCCCccceeeeccCCccccCCccEEEEEE--cCCCCceeeEeeEEEeCCC
Q 003822 697 YIVSGSCDEHVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYT--RPSSKSEIVKVNLLASTDH 774 (793)
Q Consensus 697 ~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~--~P~~~~~iv~~~ltaS~Dg 774 (793)
++++|++|+.| ++||..++.++. .+.+|.+ .|-++++ .| ....++ ++|+||
T Consensus 221 ~L~vG~d~~~i-~~~D~ds~~~~~--~~~AH~~-------------------RVK~i~~~~~~-~~~~lv----TaSSDG 273 (362)
T KOG0294|consen 221 ELLVGGDNEWI-SLKDTDSDTPLT--EFLAHEN-------------------RVKDIASYTNP-EHEYLV----TASSDG 273 (362)
T ss_pred eEEEecCCceE-EEeccCCCccce--eeecchh-------------------heeeeEEEecC-CceEEE----EeccCc
Confidence 89999999999 999999988887 7777762 3444442 34 233444 999999
Q ss_pred cEEEEcCCCCC
Q 003822 775 CDKECSHGQHS 785 (793)
Q Consensus 775 ~VkvW~~~~~~ 785 (793)
.|++|+.+...
T Consensus 274 ~I~vWd~~~~~ 284 (362)
T KOG0294|consen 274 FIKVWDIDMET 284 (362)
T ss_pred eEEEEEccccc
Confidence 99999988774
No 90
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.89 E-value=1.9e-21 Score=207.05 Aligned_cols=297 Identities=18% Similarity=0.207 Sum_probs=218.1
Q ss_pred cccceEEEEEeCCCC-CEEEEEeCCCeEEEEECCCCe--EEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEc
Q 003822 452 RSFRPRQFEYHPSIS-CLMVFGTLDGEIVVVNHENEN--IVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDI 528 (793)
Q Consensus 452 ~~~~V~~vafsP~d~-~~Lasgs~DG~I~VWd~~t~~--~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl 528 (793)
+..+|++++|||... +++|+|...|+|-+||+.+.+ .-..+.+..|..+|.++.|+|.+...+++.|.||+|++-|+
T Consensus 185 ~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~ 264 (498)
T KOG4328|consen 185 TDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDF 264 (498)
T ss_pred cccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeee
Confidence 445699999999766 789999999999999995322 22233345899999999999989999999999999999999
Q ss_pred CCCCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcE-EEEEcccCCCCeEEEEEcCCCCc
Q 003822 529 RHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRR-LQVFADMHKEHINVVKFSNHSPS 607 (793)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~-l~~~~~gh~~~V~sv~fspdg~~ 607 (793)
+........... .....+.++.|+..++.++.++.=|...+||.+++.. ...+. .|...|+.|+++|..+.
T Consensus 265 ~~~i~e~v~s~~-------~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~-lh~kKI~sv~~NP~~p~ 336 (498)
T KOG4328|consen 265 EGNISEEVLSLD-------TDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLR-LHKKKITSVALNPVCPW 336 (498)
T ss_pred cchhhHHHhhcC-------ccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhh-hhhcccceeecCCCCch
Confidence 986431111000 1113467788878888888888767999999998665 55555 69999999999999999
Q ss_pred EEEEEeCCCeEEEEECCCCCccc--eEEccCCCCeE-EEEEecCCCEEEEEeCCCeEEEEEcC----CCcEEEEEeeecC
Q 003822 608 IFATSSFDQDVKLWDLRQKPIQP--CYTASSSKGNV-MVCFSPDDHYLLVSAVDNEVRQLLAV----DGRVHLNFGITAT 680 (793)
Q Consensus 608 ~LaTgs~Dg~IrIWDlrt~~~~~--~~~l~~~~~~v-sv~fSpdg~~Lasgs~Dg~I~IwDl~----tg~~~~~l~~~~~ 680 (793)
+|+|++.|++.+|||+|.-..++ ....-.|...+ ++.|||+|-.|++.+.|+.|+|||.. ...+..++.....
T Consensus 337 ~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~ 416 (498)
T KOG4328|consen 337 FLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNR 416 (498)
T ss_pred heeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccCc
Confidence 99999999999999999743332 34444455555 59999998889999999999999983 2333333331111
Q ss_pred C--CCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCCCCccceeeeccCCccccCCccEE-EEEEcC
Q 003822 681 G--SSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSIL-AAYTRP 757 (793)
Q Consensus 681 ~--~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~-sva~~P 757 (793)
. .-......|.|+.. +|++|..-..| -|+|-..|+.+. .+.+.. + ..|. -..|||
T Consensus 417 t~RwlT~fKA~W~P~~~-li~vg~~~r~I-Dv~~~~~~q~v~--el~~P~---------~---------~tI~~vn~~HP 474 (498)
T KOG4328|consen 417 TGRWLTPFKAAWDPDYN-LIVVGRYPRPI-DVFDGNGGQMVC--ELHDPE---------S---------STIPSVNEFHP 474 (498)
T ss_pred ccccccchhheeCCCcc-EEEEeccCcce-eEEcCCCCEEee--eccCcc---------c---------cccccceeecc
Confidence 1 12345678999888 99999988888 999999988777 554433 0 1122 257999
Q ss_pred CCCceeeEeeEE-EeCCCcEEEEcCCC
Q 003822 758 SSKSEIVKVNLL-ASTDHCDKECSHGQ 783 (793)
Q Consensus 758 ~~~~~iv~~~lt-aS~Dg~VkvW~~~~ 783 (793)
. ++.++ . ++..|.|.||....
T Consensus 475 ~-~~~~~----aG~~s~Gki~vft~k~ 496 (498)
T KOG4328|consen 475 M-RDTLA----AGGNSSGKIYVFTNKK 496 (498)
T ss_pred c-cccee----ccCCccceEEEEecCC
Confidence 5 44333 3 34578888887643
No 91
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.89 E-value=4.5e-21 Score=195.11 Aligned_cols=263 Identities=13% Similarity=0.198 Sum_probs=201.2
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCC-CeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCc
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHEN-ENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS 534 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t-~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~ 534 (793)
|.+++|+|....++++|+.||+||+|+++. |..+... ...|.++|.+++|+ .+|..+++|+.|+.+++||+.+++.
T Consensus 30 IS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka-~~~~~~PvL~v~Ws-ddgskVf~g~~Dk~~k~wDL~S~Q~- 106 (347)
T KOG0647|consen 30 ISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKA-QQSHDGPVLDVCWS-DDGSKVFSGGCDKQAKLWDLASGQV- 106 (347)
T ss_pred hheeEeccccCceEEecccCCceEEEEEecCCcccchh-hhccCCCeEEEEEc-cCCceEEeeccCCceEEEEccCCCe-
Confidence 889999997777888999999999999986 4444422 33789999999998 7899999999999999999999865
Q ss_pred ccccccCCceeEecCCCCeEEEEEccCCC--EEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEE
Q 003822 535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDE--LFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATS 612 (793)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~V~sv~~s~~~~--~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTg 612 (793)
.....|..+|..++|-+... .+++|+.|++|+.||.+...++.++. -...++++..- . .+++.+
T Consensus 107 ---------~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~--LPeRvYa~Dv~--~-pm~vVa 172 (347)
T KOG0647|consen 107 ---------SQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ--LPERVYAADVL--Y-PMAVVA 172 (347)
T ss_pred ---------eeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee--ccceeeehhcc--C-ceeEEE
Confidence 22345668899999977665 77888899999999999999999987 66788887764 2 478888
Q ss_pred eCCCeEEEEECCCCCccc-eEEccCCCCeEEEEEecCCCEEEEEeCCCeEEEEEcCCC--cEEEEEeeecC---CC---C
Q 003822 613 SFDQDVKLWDLRQKPIQP-CYTASSSKGNVMVCFSPDDHYLLVSAVDNEVRQLLAVDG--RVHLNFGITAT---GS---S 683 (793)
Q Consensus 613 s~Dg~IrIWDlrt~~~~~-~~~l~~~~~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg--~~~~~l~~~~~---~~---~ 683 (793)
..++.|.+|+++.+.... ...-+-.....+++..+|....+.|+-+|.+.|..+..+ +.-.+|+-+.. .. .
T Consensus 173 ta~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VY 252 (347)
T KOG0647|consen 173 TAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVY 252 (347)
T ss_pred ecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceE
Confidence 899999999998763221 111112223346777888777899999999999988876 33334443332 11 2
Q ss_pred CcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCCCCccceeeeccCCccccCCccEEEEEEcCC
Q 003822 684 QNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPS 758 (793)
Q Consensus 684 ~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~ 758 (793)
.|.+++|+|.-+ .|+|+|.||+. .+||-....+++ +.+- |..+|.+..|+-+
T Consensus 253 aVNsi~FhP~hg-tlvTaGsDGtf-~FWDkdar~kLk--~s~~-------------------~~qpItcc~fn~~ 304 (347)
T KOG0647|consen 253 AVNSIAFHPVHG-TLVTAGSDGTF-SFWDKDARTKLK--TSET-------------------HPQPITCCSFNRN 304 (347)
T ss_pred EecceEeecccc-eEEEecCCceE-EEecchhhhhhh--ccCc-------------------CCCccceeEecCC
Confidence 355679999877 99999999999 999998877776 3333 3346777777775
No 92
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=2.5e-21 Score=197.21 Aligned_cols=300 Identities=13% Similarity=0.142 Sum_probs=228.6
Q ss_pred ccCCCCCCCCcccceEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCC
Q 003822 442 VSGNHMGDENRSFRPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNG 521 (793)
Q Consensus 442 ~~g~~~~~~~~~~~V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~Dg 521 (793)
..||.++ |+.++-.. ...++.+++.|.+.+||.+++|.++.++. ||.+.|.++.|+ +.+.++++++.|+
T Consensus 144 ~~GHkDG-------iW~Vaa~~-tqpi~gtASADhTA~iWs~Esg~CL~~Y~--GH~GSVNsikfh-~s~~L~lTaSGD~ 212 (481)
T KOG0300|consen 144 LEGHKDG-------IWHVAADS-TQPICGTASADHTARIWSLESGACLATYT--GHTGSVNSIKFH-NSGLLLLTASGDE 212 (481)
T ss_pred hcccccc-------eeeehhhc-CCcceeecccccceeEEeeccccceeeec--ccccceeeEEec-cccceEEEccCCc
Confidence 3567665 77888777 56699999999999999999999998877 999999999998 7889999999999
Q ss_pred cEEEEEcC----CCCC----------ccc-------cc------ccC---CceeEe-cCCCCeEEEEEccCCCEEEEEEC
Q 003822 522 SLKLYDIR----HMPP----------SIR-------GM------HYG---AGTVTF-DEFDQLTSVHVNSMDELFLASGY 570 (793)
Q Consensus 522 tV~vWDl~----~~~~----------~~~-------~~------~~~---~~~~~~-~~~~~V~sv~~s~~~~~lla~g~ 570 (793)
+.+||... ..+. ... .. .++ .+...+ .|...|.+..|-..+..+++++.
T Consensus 213 taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSW 292 (481)
T KOG0300|consen 213 TAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASW 292 (481)
T ss_pred chHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeec
Confidence 99999722 1110 000 00 000 011112 35577888899889999999999
Q ss_pred CCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEECCCCCccceEEccCCCCeEE-EEEecCC
Q 003822 571 SKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVM-VCFSPDD 649 (793)
Q Consensus 571 Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~~~~vs-v~fSpdg 649 (793)
|.+..+||+++|..+..+. ||....+.++-+|.. .+++|++.|.+.++||.|. ....+..+++|...+. +.|..+.
T Consensus 293 DRTAnlwDVEtge~v~~Lt-GHd~ELtHcstHptQ-rLVvTsSrDtTFRLWDFRe-aI~sV~VFQGHtdtVTS~vF~~dd 369 (481)
T KOG0300|consen 293 DRTANLWDVETGEVVNILT-GHDSELTHCSTHPTQ-RLVVTSSRDTTFRLWDFRE-AIQSVAVFQGHTDTVTSVVFNTDD 369 (481)
T ss_pred cccceeeeeccCceecccc-CcchhccccccCCcc-eEEEEeccCceeEeccchh-hcceeeeecccccceeEEEEecCC
Confidence 9999999999999999999 799999999999998 8999999999999999995 4556777888887764 7787655
Q ss_pred CEEEEEeCCCeEEEEEcCCCc-EEEEEeeecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCC
Q 003822 650 HYLLVSAVDNEVRQLLAVDGR-VHLNFGITATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKG 728 (793)
Q Consensus 650 ~~Lasgs~Dg~I~IwDl~tg~-~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~ 728 (793)
+ +++|+.|.+|+|||+++.+ ++.++. ....+..++.+..+. .|+.--++..| ++||+...+.-+ +.
T Consensus 370 ~-vVSgSDDrTvKvWdLrNMRsplATIR----tdS~~NRvavs~g~~-iIAiPhDNRqv-RlfDlnG~RlaR---lP--- 436 (481)
T KOG0300|consen 370 R-VVSGSDDRTVKVWDLRNMRSPLATIR----TDSPANRVAVSKGHP-IIAIPHDNRQV-RLFDLNGNRLAR---LP--- 436 (481)
T ss_pred c-eeecCCCceEEEeeeccccCcceeee----cCCccceeEeecCCc-eEEeccCCceE-EEEecCCCcccc---CC---
Confidence 4 8999999999999999865 455554 344566777777666 55555555566 999986444333 22
Q ss_pred CCccceeeeccCCccccCCccEEEEEEcCCCC-ceeeEeeEEEeCCCcEEEEcCCC
Q 003822 729 SGTSMFVQSLRGDPFRDFNMSILAAYTRPSSK-SEIVKVNLLASTDHCDKECSHGQ 783 (793)
Q Consensus 729 ~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~~-~~iv~~~ltaS~Dg~VkvW~~~~ 783 (793)
.....+|...|.+++|....+ ..+ ++++-|..+.-|+...
T Consensus 437 -----------rtsRqgHrRMV~c~AW~eehp~cnL----ftcGFDR~v~gW~in~ 477 (481)
T KOG0300|consen 437 -----------RTSRQGHRRMVTCCAWLEEHPACNL----FTCGFDRMVAGWKINT 477 (481)
T ss_pred -----------cccccccceeeeeeeccccCccccc----ccccccceeeeeEecc
Confidence 223347778999999975432 233 4899999999998754
No 93
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.88 E-value=5.7e-21 Score=211.11 Aligned_cols=296 Identities=13% Similarity=0.140 Sum_probs=227.9
Q ss_pred EEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEE-EEeccCCCCCEEEEEEeeCC----------CCEEEEEEcCCcEEE
Q 003822 457 RQFEYHPSISCLMVFGTLDGEIVVVNHENENIVS-YIPSFGAMNSVLGLCWLKKY----------PSKLIAGSDNGSLKL 525 (793)
Q Consensus 457 ~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~-~l~~~~h~~~V~sv~fs~~~----------g~~Lasgs~DgtV~v 525 (793)
-++.|+| ....|.+...|..++|||++.-+.+. ......|...|++|.-.|.+ ...|+|++.|++|++
T Consensus 328 IA~~Fde-t~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRl 406 (1080)
T KOG1408|consen 328 IACQFDE-TTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRL 406 (1080)
T ss_pred eEEEecC-CCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEE
Confidence 4577898 77889999999999999997643221 11222688888888755311 236999999999999
Q ss_pred EEcCCCCC--cc-cc--------c-----------------ccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEE
Q 003822 526 YDIRHMPP--SI-RG--------M-----------------HYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALY 577 (793)
Q Consensus 526 WDl~~~~~--~~-~~--------~-----------------~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IW 577 (793)
||+..... .. +. . ......-.+.....+.+++++|++.++++|...|+++||
T Consensus 407 W~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy 486 (1080)
T KOG1408|consen 407 WDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVY 486 (1080)
T ss_pred eecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEE
Confidence 99986321 00 00 0 001111223344579999999999999988889999999
Q ss_pred ECCCCcEEEEEcccCCCCeEEEEEcCC--CCcEEEEEeCCCeEEEEECCCCCccceEEccC-------------------
Q 003822 578 DINSGRRLQVFADMHKEHINVVKFSNH--SPSIFATSSFDQDVKLWDLRQKPIQPCYTASS------------------- 636 (793)
Q Consensus 578 Dl~tg~~l~~~~~gh~~~V~sv~fspd--g~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~------------------- 636 (793)
|+...+....+. +|...|.|+.|+.. +.++||+++.|+.|.|||....- ..+.++.+
T Consensus 487 ~Lq~l~~~~~~e-AHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny-~l~qtld~HSssITsvKFa~~gln~~M 564 (1080)
T KOG1408|consen 487 DLQELEYTCFME-AHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNY-DLVQTLDGHSSSITSVKFACNGLNRKM 564 (1080)
T ss_pred Eehhhhhhhhee-cccceeEEEeecCchhhhHhhhhccCCceEEEEeccccc-chhhhhcccccceeEEEEeecCCceEE
Confidence 999888888887 79999999999853 23789999999999999986421 00111111
Q ss_pred -------------------------------CCCeEEEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCc
Q 003822 637 -------------------------------SKGNVMVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQN 685 (793)
Q Consensus 637 -------------------------------~~~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v 685 (793)
+.....++..|..+++++++.|..|+|||+.+|+..+.|++...+....
T Consensus 565 iscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~l 644 (1080)
T KOG1408|consen 565 ISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDL 644 (1080)
T ss_pred EeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCce
Confidence 1122347778888999999999999999999999999999888887888
Q ss_pred EEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCCCCccceeeeccCCccccCCccEEEEEEcCCCCceeeE
Q 003822 686 YTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKSEIVK 765 (793)
Q Consensus 686 ~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~~~~iv~ 765 (793)
..+...|.|- ||++...|.++ .++|+.+|+++. ++.||. ..|+++.|.++ ..-++
T Consensus 645 IKv~lDPSgi-Y~atScsdktl-~~~Df~sgEcvA--~m~GHs-------------------E~VTG~kF~nD-CkHlI- 699 (1080)
T KOG1408|consen 645 IKVILDPSGI-YLATSCSDKTL-CFVDFVSGECVA--QMTGHS-------------------EAVTGVKFLND-CKHLI- 699 (1080)
T ss_pred EEEEECCCcc-EEEEeecCCce-EEEEeccchhhh--hhcCcc-------------------hheeeeeeccc-chhhe-
Confidence 9999999998 99999999999 999999999999 777776 47999999996 33444
Q ss_pred eeEEEeCCCcEEEEcCCC
Q 003822 766 VNLLASTDHCDKECSHGQ 783 (793)
Q Consensus 766 ~~ltaS~Dg~VkvW~~~~ 783 (793)
++++||+|.||.++-
T Consensus 700 ---SvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 700 ---SVSGDGCIFVWKLPL 714 (1080)
T ss_pred ---eecCCceEEEEECch
Confidence 899999999999864
No 94
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.88 E-value=4.6e-21 Score=195.06 Aligned_cols=262 Identities=15% Similarity=0.169 Sum_probs=198.0
Q ss_pred CCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEE
Q 003822 496 GAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIA 575 (793)
Q Consensus 496 ~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~ 575 (793)
...+.|.+++|+|....++++||.||+||+|+++..... .+.....+.++|.+++|+.++..+++++.|+.++
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~-------~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k 97 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQL-------VPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAK 97 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcc-------cchhhhccCCCeEEEEEccCCceEEeeccCCceE
Confidence 346789999999767778889999999999999874221 1122345668999999999999999999999999
Q ss_pred EEECCCCcEEEEEcccCCCCeEEEEEcCCCC-cEEEEEeCCCeEEEEECCCCCccceEEccCCCCeEEEEEecCCCEEEE
Q 003822 576 LYDINSGRRLQVFADMHKEHINVVKFSNHSP-SIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLV 654 (793)
Q Consensus 576 IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~-~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~~~~vsv~fSpdg~~Las 654 (793)
+||+.+++....- .|.++|.++.|-+... ..|+|||.|.+|+.||+|... ++.++.-.....++ +--...+++
T Consensus 98 ~wDL~S~Q~~~v~--~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~--pv~t~~LPeRvYa~--Dv~~pm~vV 171 (347)
T KOG0647|consen 98 LWDLASGQVSQVA--AHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSN--PVATLQLPERVYAA--DVLYPMAVV 171 (347)
T ss_pred EEEccCCCeeeee--ecccceeEEEEecCCCcceeEecccccceeecccCCCC--eeeeeeccceeeeh--hccCceeEE
Confidence 9999999665544 4999999999987652 389999999999999999874 44444433344332 223467888
Q ss_pred EeCCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCCCCccce
Q 003822 655 SAVDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKGSGTSMF 734 (793)
Q Consensus 655 gs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~ 734 (793)
+..+..|.+|++.++....... ...-...+.+++...+.. ..+.|+-+|++ -|..+..+.....++++.|.....
T Consensus 172 ata~r~i~vynL~n~~te~k~~-~SpLk~Q~R~va~f~d~~-~~alGsiEGrv-~iq~id~~~~~~nFtFkCHR~~~~-- 246 (347)
T KOG0647|consen 172 ATAERHIAVYNLENPPTEFKRI-ESPLKWQTRCVACFQDKD-GFALGSIEGRV-AIQYIDDPNPKDNFTFKCHRSTNS-- 246 (347)
T ss_pred EecCCcEEEEEcCCCcchhhhh-cCcccceeeEEEEEecCC-ceEeeeecceE-EEEecCCCCccCceeEEEeccCCC--
Confidence 8899999999998775432211 122345677888888888 55899999999 999999986666778888873111
Q ss_pred eeeccCCccccCCccEEEEEEcCCCCceeeEeeEEEeCCCcEEEEcCCCCCCCC
Q 003822 735 VQSLRGDPFRDFNMSILAAYTRPSSKSEIVKVNLLASTDHCDKECSHGQHSRPS 788 (793)
Q Consensus 735 v~sl~g~~~~~h~~~V~sva~~P~~~~~iv~~~ltaS~Dg~VkvW~~~~~~~~~ 788 (793)
..+.-..|++++||| -...++ ++++||++.+|+-+.+.+-+
T Consensus 247 --------~~~~VYaVNsi~FhP-~hgtlv----TaGsDGtf~FWDkdar~kLk 287 (347)
T KOG0647|consen 247 --------VNDDVYAVNSIAFHP-VHGTLV----TAGSDGTFSFWDKDARTKLK 287 (347)
T ss_pred --------CCCceEEecceEeec-ccceEE----EecCCceEEEecchhhhhhh
Confidence 011124799999999 566777 99999999999987766443
No 95
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=2.9e-20 Score=190.09 Aligned_cols=259 Identities=14% Similarity=0.167 Sum_probs=200.0
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcc
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSI 535 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~ 535 (793)
|+.|.|+| ..+.|++++.||++++|++........+ .|..++.+++|. +...+++|+.||.|+.+|+.++..
T Consensus 16 IS~v~f~~-~~~~LLvssWDgslrlYdv~~~~l~~~~---~~~~plL~c~F~--d~~~~~~G~~dg~vr~~Dln~~~~-- 87 (323)
T KOG1036|consen 16 ISSVKFSP-SSSDLLVSSWDGSLRLYDVPANSLKLKF---KHGAPLLDCAFA--DESTIVTGGLDGQVRRYDLNTGNE-- 87 (323)
T ss_pred eeeEEEcC-cCCcEEEEeccCcEEEEeccchhhhhhe---ecCCceeeeecc--CCceEEEeccCceEEEEEecCCcc--
Confidence 89999998 6677777889999999999887665555 578899999996 577899999999999999999764
Q ss_pred cccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeCC
Q 003822 536 RGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFD 615 (793)
Q Consensus 536 ~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~D 615 (793)
.....|..+|.+|...+..+.+++||.|++|++||.+......++. ....|.++... | +.|+.|+.|
T Consensus 88 --------~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d--~~kkVy~~~v~--g-~~LvVg~~~ 154 (323)
T KOG1036|consen 88 --------DQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFD--QGKKVYCMDVS--G-NRLVVGTSD 154 (323)
T ss_pred --------eeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccc--cCceEEEEecc--C-CEEEEeecC
Confidence 3344566889999999999999999999999999999866666666 45588888875 3 678999999
Q ss_pred CeEEEEECCCCCccc-eEEccCCCCeEEEEEecCCCEEEEEeCCCeEEEEEcCCC----cEEEEEeeecCC------CCC
Q 003822 616 QDVKLWDLRQKPIQP-CYTASSSKGNVMVCFSPDDHYLLVSAVDNEVRQLLAVDG----RVHLNFGITATG------SSQ 684 (793)
Q Consensus 616 g~IrIWDlrt~~~~~-~~~l~~~~~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg----~~~~~l~~~~~~------~~~ 684 (793)
..|.+||+|+..... ...-.-.-...++++-|++.-.++++-||.|.+=.+... +....|+-|... -..
T Consensus 155 r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yP 234 (323)
T KOG1036|consen 155 RKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYP 234 (323)
T ss_pred ceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEE
Confidence 999999999853221 111111112336899998888999999999988666554 222333322211 125
Q ss_pred cEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCCCCccceeeeccCCccccCCccEEEEEEcCC
Q 003822 685 NYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPS 758 (793)
Q Consensus 685 v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~ 758 (793)
|.+++|+|--+ .++||+.||.| .+||..+.+++. .+.+- ..+|.+++|+-+
T Consensus 235 VNai~Fhp~~~-tfaTgGsDG~V-~~Wd~~~rKrl~--q~~~~-------------------~~SI~slsfs~d 285 (323)
T KOG1036|consen 235 VNAIAFHPIHG-TFATGGSDGIV-NIWDLFNRKRLK--QLAKY-------------------ETSISSLSFSMD 285 (323)
T ss_pred eceeEeccccc-eEEecCCCceE-EEccCcchhhhh--hccCC-------------------CCceEEEEeccC
Confidence 67889999877 99999999999 999999999888 44332 346788888875
No 96
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.88 E-value=9.6e-21 Score=202.00 Aligned_cols=274 Identities=13% Similarity=0.149 Sum_probs=211.4
Q ss_pred cceEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEE-EEe-------------c--cCCCCCEEEEEEeeCCCCEEEEE
Q 003822 454 FRPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVS-YIP-------------S--FGAMNSVLGLCWLKKYPSKLIAG 517 (793)
Q Consensus 454 ~~V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~-~l~-------------~--~~h~~~V~sv~fs~~~g~~Lasg 517 (793)
..|++++++| ++++.++++.+|+|.=|++.+++... .++ . .+|...|.+++.+ +++.+|++|
T Consensus 143 ~s~~~vals~-d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS-~Dgkylatg 220 (479)
T KOG0299|consen 143 LSVTSVALSP-DDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVS-SDGKYLATG 220 (479)
T ss_pred CcceEEEeec-cccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEc-CCCcEEEec
Confidence 3489999999 88999999999999999998876431 111 1 2788899999987 899999999
Q ss_pred EcCCcEEEEEcCCCCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeE
Q 003822 518 SDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHIN 597 (793)
Q Consensus 518 s~DgtV~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~ 597 (793)
+.|..|.||+.++.+... ..-.|.+.|.+++|-.....+++++.|++|++|++.....+.++- ||++.|.
T Consensus 221 g~d~~v~Iw~~~t~ehv~---------~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetly-GHqd~v~ 290 (479)
T KOG0299|consen 221 GRDRHVQIWDCDTLEHVK---------VFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLY-GHQDGVL 290 (479)
T ss_pred CCCceEEEecCcccchhh---------cccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHh-CCcccee
Confidence 999999999999976421 123455889999998888899999999999999999988888888 7999999
Q ss_pred EEEEcCCCCcEEEEEeCCCeEEEEECCCCCccceEEccCCCCeE-EEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEe
Q 003822 598 VVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFG 676 (793)
Q Consensus 598 sv~fspdg~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~~~~v-sv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~ 676 (793)
+|....-+ ..+.+|+.|+++++|++... .+.++ .++.+.+ +++|-. ...+++|+.+|.|.+|++.+.+++.+..
T Consensus 291 ~IdaL~re-R~vtVGgrDrT~rlwKi~ee-sqlif--rg~~~sidcv~~In-~~HfvsGSdnG~IaLWs~~KKkplf~~~ 365 (479)
T KOG0299|consen 291 GIDALSRE-RCVTVGGRDRTVRLWKIPEE-SQLIF--RGGEGSIDCVAFIN-DEHFVSGSDNGSIALWSLLKKKPLFTSR 365 (479)
T ss_pred eechhccc-ceEEeccccceeEEEecccc-ceeee--eCCCCCeeeEEEec-ccceeeccCCceEEEeeecccCceeEee
Confidence 99988776 67777779999999999543 23333 3445444 577764 5668999999999999999999887776
Q ss_pred eecCCC---------CCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCCCCccceeeeccCCccccCC
Q 003822 677 ITATGS---------SQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFN 747 (793)
Q Consensus 677 ~~~~~~---------~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~ 747 (793)
..++.. ..+.+++..|... ++++|+.+|.| ++|.+..|-.-- . ...++ + ..
T Consensus 366 ~AHgv~~~~~~~~~~~Witsla~i~~sd-L~asGS~~G~v-rLW~i~~g~r~i--~----------~l~~l---s---~~ 425 (479)
T KOG0299|consen 366 LAHGVIPELDPVNGNFWITSLAVIPGSD-LLASGSWSGCV-RLWKIEDGLRAI--N----------LLYSL---S---LV 425 (479)
T ss_pred ccccccCCccccccccceeeeEecccCc-eEEecCCCCce-EEEEecCCcccc--c----------eeeec---c---cc
Confidence 432211 2566777778777 99999999999 999998883311 1 11111 1 22
Q ss_pred ccEEEEEEcCCCCceee
Q 003822 748 MSILAAYTRPSSKSEIV 764 (793)
Q Consensus 748 ~~V~sva~~P~~~~~iv 764 (793)
+.|++++|++++...++
T Consensus 426 GfVNsl~f~~sgk~iva 442 (479)
T KOG0299|consen 426 GFVNSLAFSNSGKRIVA 442 (479)
T ss_pred cEEEEEEEccCCCEEEE
Confidence 46999999997653333
No 97
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=9.6e-20 Score=187.17 Aligned_cols=248 Identities=19% Similarity=0.198 Sum_probs=198.0
Q ss_pred CCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEEC--CCcE
Q 003822 497 AMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY--SKNI 574 (793)
Q Consensus 497 h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~--Dg~I 574 (793)
..+.|.++.|+ .+|..+++++.|.++++||..+++.... .......+..++|......++.++. |.+|
T Consensus 13 ~~~~i~sl~fs-~~G~~litss~dDsl~LYd~~~g~~~~t---------i~skkyG~~~~~Fth~~~~~i~sStk~d~tI 82 (311)
T KOG1446|consen 13 TNGKINSLDFS-DDGLLLITSSEDDSLRLYDSLSGKQVKT---------INSKKYGVDLACFTHHSNTVIHSSTKEDDTI 82 (311)
T ss_pred CCCceeEEEec-CCCCEEEEecCCCeEEEEEcCCCceeeE---------eecccccccEEEEecCCceEEEccCCCCCce
Confidence 45789999998 8999999999999999999998775211 1122245667777777777877775 8999
Q ss_pred EEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEECCCCCccceEEccCCCCeEEEEEecCCCEEEE
Q 003822 575 ALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLV 654 (793)
Q Consensus 575 ~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~~~~vsv~fSpdg~~Las 654 (793)
+..++.+.+.++.|. ||...|++++.+|-+ ..+++++.|++|++||+|..+++-.....+ . -.++|+|+|-++|+
T Consensus 83 ryLsl~dNkylRYF~-GH~~~V~sL~~sP~~-d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~--~-pi~AfDp~GLifA~ 157 (311)
T KOG1446|consen 83 RYLSLHDNKYLRYFP-GHKKRVNSLSVSPKD-DTFLSSSLDKTVRLWDLRVKKCQGLLNLSG--R-PIAAFDPEGLIFAL 157 (311)
T ss_pred EEEEeecCceEEEcC-CCCceEEEEEecCCC-CeEEecccCCeEEeeEecCCCCceEEecCC--C-cceeECCCCcEEEE
Confidence 999999999999999 799999999999999 899999999999999999887665555443 2 23799999999999
Q ss_pred EeCCCeEEEEEcCCC--cEEEEEeeecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCCCCcc
Q 003822 655 SAVDNEVRQLLAVDG--RVHLNFGITATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKGSGTS 732 (793)
Q Consensus 655 gs~Dg~I~IwDl~tg--~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s 732 (793)
+...+.|++||++.- .+..++.+..........+.|+|||+ +++.+...+.+ ++.|.-+|..+. ++.++.+
T Consensus 158 ~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK-~iLlsT~~s~~-~~lDAf~G~~~~--tfs~~~~--- 230 (311)
T KOG1446|consen 158 ANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGK-SILLSTNASFI-YLLDAFDGTVKS--TFSGYPN--- 230 (311)
T ss_pred ecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCC-EEEEEeCCCcE-EEEEccCCcEee--eEeeccC---
Confidence 998889999999863 44556655445566788899999999 77777888888 999999999988 6666652
Q ss_pred ceeeeccCCccccCCccEEEEEEcCCCCceeeEeeEEEeCCCcEEEEcCCCC
Q 003822 733 MFVQSLRGDPFRDFNMSILAAYTRPSSKSEIVKVNLLASTDHCDKECSHGQH 784 (793)
Q Consensus 733 ~~v~sl~g~~~~~h~~~V~sva~~P~~~~~iv~~~ltaS~Dg~VkvW~~~~~ 784 (793)
+. ..-..+.|.|++ .-++ +|+.||+|.+|+....
T Consensus 231 ------------~~-~~~~~a~ftPds-~Fvl----~gs~dg~i~vw~~~tg 264 (311)
T KOG1446|consen 231 ------------AG-NLPLSATFTPDS-KFVL----SGSDDGTIHVWNLETG 264 (311)
T ss_pred ------------CC-CcceeEEECCCC-cEEE----EecCCCcEEEEEcCCC
Confidence 00 112578899964 3333 7888999999998543
No 98
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.87 E-value=1.2e-20 Score=199.53 Aligned_cols=241 Identities=18% Similarity=0.163 Sum_probs=196.5
Q ss_pred ceEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCc
Q 003822 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS 534 (793)
Q Consensus 455 ~V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~ 534 (793)
.|+.+.||| +...+++++.|..|+||............ .|..+|+.+.-+ +.|.||++++.||+..+.|++++...
T Consensus 263 ki~~v~~~~-~~~~v~~aSad~~i~vws~~~~s~~~~~~--~h~~~V~~ls~h-~tgeYllsAs~d~~w~Fsd~~~g~~l 338 (506)
T KOG0289|consen 263 KITSVKFHK-DLDTVITASADEIIRVWSVPLSSEPTSSR--PHEEPVTGLSLH-PTGEYLLSASNDGTWAFSDISSGSQL 338 (506)
T ss_pred EEEEEEecc-chhheeecCCcceEEeeccccccCccccc--cccccceeeeec-cCCcEEEEecCCceEEEEEccCCcEE
Confidence 489999999 88899999999999999988766554444 899999999987 79999999999999999999997762
Q ss_pred ccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeC
Q 003822 535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSF 614 (793)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~ 614 (793)
...... ...-.+++.+|||++-.|.+|..||.|+|||+.++..+..|. +|+++|..++|+.+| .+||+++.
T Consensus 339 t~vs~~-------~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fp-ght~~vk~i~FsENG-Y~Lat~ad 409 (506)
T KOG0289|consen 339 TVVSDE-------TSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFP-GHTGPVKAISFSENG-YWLATAAD 409 (506)
T ss_pred EEEeec-------cccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCC-CCCCceeEEEeccCc-eEEEEEec
Confidence 211100 011347999999998888888899999999999999999999 699999999999999 99999999
Q ss_pred CCeEEEEECCCCCccceEEccCCCCeEEEEEecCCCEEEEEeCCCeEEEEEcCC--CcEEEEEeeecCCCCCcEEEEEee
Q 003822 615 DQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLVSAVDNEVRQLLAVD--GRVHLNFGITATGSSQNYTRSYYL 692 (793)
Q Consensus 615 Dg~IrIWDlrt~~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~t--g~~~~~l~~~~~~~~~v~s~afsp 692 (793)
|+.|++||+|..+..+.+.+....++.++.|.+.|.+|+.++.|=.|++++-.+ +..+..+. .+......+.|..
T Consensus 410 d~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~---~~sg~st~v~Fg~ 486 (506)
T KOG0289|consen 410 DGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELA---DHSGLSTGVRFGE 486 (506)
T ss_pred CCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhh---hcccccceeeecc
Confidence 999999999998767777777766778899999999999998777777776433 34444442 3333455666666
Q ss_pred CCCeEEEEEeCCCcEEEEEEc
Q 003822 693 NGRDYIVSGSCDEHVVRICCA 713 (793)
Q Consensus 693 dg~~~L~Sgs~Dg~II~IWDv 713 (793)
..+ +++++|.|... +++.+
T Consensus 487 ~aq-~l~s~smd~~l-~~~a~ 505 (506)
T KOG0289|consen 487 HAQ-YLASTSMDAIL-RLYAL 505 (506)
T ss_pred cce-EEeeccchhhe-EEeec
Confidence 666 99999999887 88753
No 99
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.87 E-value=4e-21 Score=206.58 Aligned_cols=246 Identities=18% Similarity=0.295 Sum_probs=191.5
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEe----------ccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEE
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIP----------SFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKL 525 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~----------~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~v 525 (793)
|++++|+| .+..|++.+.....+|+|-...+.+...+ ..||...+++.+|+|.+.+.|+|++.||++++
T Consensus 217 i~sl~ys~-Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRi 295 (641)
T KOG0772|consen 217 INSLQYSV-TGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRI 295 (641)
T ss_pred cceeeecC-CCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEE
Confidence 89999999 77777777777889999976544433322 34899999999999888889999999999999
Q ss_pred EEcCCCCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCC--cEEEEEcccCCC--CeEEEEE
Q 003822 526 YDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSG--RRLQVFADMHKE--HINVVKF 601 (793)
Q Consensus 526 WDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg--~~l~~~~~gh~~--~V~sv~f 601 (793)
||++..+.....+.... .-...-+++.++|++++..+++++.||.|.+|+.... .+...+..+|.. .|+||.|
T Consensus 296 Wdv~~~k~q~qVik~k~---~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~F 372 (641)
T KOG0772|consen 296 WDVNNTKSQLQVIKTKP---AGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISF 372 (641)
T ss_pred EecCCchhheeEEeecc---CCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEe
Confidence 99988654322221110 0122256899999999999888889999999998643 345555567887 9999999
Q ss_pred cCCCCcEEEEEeCCCeEEEEECCCCCccceEEccC---CCCeEEEEEecCCCEEEEEeC------CCeEEEEEcCCCcEE
Q 003822 602 SNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASS---SKGNVMVCFSPDDHYLLVSAV------DNEVRQLLAVDGRVH 672 (793)
Q Consensus 602 spdg~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~---~~~~vsv~fSpdg~~Lasgs~------Dg~I~IwDl~tg~~~ 672 (793)
+++| ++|++-+.|+++++||+|..+ .++....+ ......++|||+.+.|++|+. .|.+.+||..+-..+
T Consensus 373 S~dg-~~LlSRg~D~tLKvWDLrq~k-kpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v 450 (641)
T KOG0772|consen 373 SYDG-NYLLSRGFDDTLKVWDLRQFK-KPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTV 450 (641)
T ss_pred cccc-chhhhccCCCceeeeeccccc-cchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeE
Confidence 9999 899999999999999999854 33333322 222235899999999999863 478999999999888
Q ss_pred EEEeeecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEE
Q 003822 673 LNFGITATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICC 712 (793)
Q Consensus 673 ~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWD 712 (793)
+++.+. ...+..+.|+|.=. .|++|+.||++ +||-
T Consensus 451 ~ki~i~---~aSvv~~~WhpkLN-Qi~~gsgdG~~-~vyY 485 (641)
T KOG0772|consen 451 YKIDIS---TASVVRCLWHPKLN-QIFAGSGDGTA-HVYY 485 (641)
T ss_pred EEecCC---CceEEEEeecchhh-heeeecCCCce-EEEE
Confidence 888653 56788999999876 78889999999 8873
No 100
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=6.8e-22 Score=221.33 Aligned_cols=243 Identities=19% Similarity=0.200 Sum_probs=191.0
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCC---CeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCC
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHEN---ENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMP 532 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t---~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~ 532 (793)
+.-|.|+..+.++||+++..|.|.+||+.. .+.+..+. .|...|.+++|++..+++|++||.||+|++||++..+
T Consensus 90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~--EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~ 167 (839)
T KOG0269|consen 90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFN--EHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKK 167 (839)
T ss_pred hhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhh--hhccceeeeeeccCCccEEEecCCCceEEEEeeeccc
Confidence 455788877889999999999999999986 33333444 8999999999998899999999999999999999865
Q ss_pred CcccccccCCceeEecCCCCeEEEEEccCCCEEEEEE-CCCcEEEEECCCC-cEEEEEcccCCCCeEEEEEcCCCCcEEE
Q 003822 533 PSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASG-YSKNIALYDINSG-RRLQVFADMHKEHINVVKFSNHSPSIFA 610 (793)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g-~Dg~I~IWDl~tg-~~l~~~~~gh~~~V~sv~fspdg~~~La 610 (793)
... ..+.....|..|.|+|..+..++++ ..|.+.+||++.. ++...+. +|.++|.|+.|+|++ .+||
T Consensus 168 S~~---------t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~-AH~GpV~c~nwhPnr-~~lA 236 (839)
T KOG0269|consen 168 SKS---------TFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLT-AHNGPVLCLNWHPNR-EWLA 236 (839)
T ss_pred ccc---------cccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhh-cccCceEEEeecCCC-ceee
Confidence 421 1223446799999998766555555 6799999999974 5666776 799999999999987 8999
Q ss_pred EEeCCCeEEEEECCCCCccceEEccCCCCeEEEEEecCCCE-EEEEe--CCCeEEEEEcCCCcEE-EEEeeecCCCCCcE
Q 003822 611 TSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHY-LLVSA--VDNEVRQLLAVDGRVH-LNFGITATGSSQNY 686 (793)
Q Consensus 611 Tgs~Dg~IrIWDlrt~~~~~~~~l~~~~~~vsv~fSpdg~~-Lasgs--~Dg~I~IwDl~tg~~~-~~l~~~~~~~~~v~ 686 (793)
||+.|+.|+|||..+....+..++.....+.++.|-|..++ ||+++ .|-.|+|||++..-.. .++. .|...+.
T Consensus 237 TGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~---eH~~~vt 313 (839)
T KOG0269|consen 237 TGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFL---EHTDSVT 313 (839)
T ss_pred ecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeee---ccCcccc
Confidence 99999999999999887777777776656667999998765 44444 4789999999865432 3332 4666677
Q ss_pred EEEEeeCCCeEEEEEeCCCcEEEEEEcCC
Q 003822 687 TRSYYLNGRDYIVSGSCDEHVVRICCAQT 715 (793)
Q Consensus 687 s~afspdg~~~L~Sgs~Dg~II~IWDv~t 715 (793)
.++|...+...+.+++.||.+ ..-.++.
T Consensus 314 ~i~W~~~d~~~l~s~sKD~tv-~qh~~kn 341 (839)
T KOG0269|consen 314 GIAWDSGDRINLWSCSKDGTV-LQHLFKN 341 (839)
T ss_pred ceeccCCCceeeEeecCccHH-HHhhhhc
Confidence 788877666689999999988 4444443
No 101
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.87 E-value=3.6e-20 Score=185.21 Aligned_cols=226 Identities=16% Similarity=0.176 Sum_probs=191.4
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcc
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSI 535 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~ 535 (793)
|-.++|+|..+..+++++.|.+|++||+..+++...+... +.=.-++|+ |+|+++++++.|..|.+.|.++.+.
T Consensus 67 vdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~---~eni~i~ws-p~g~~~~~~~kdD~it~id~r~~~~-- 140 (313)
T KOG1407|consen 67 VDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETK---GENINITWS-PDGEYIAVGNKDDRITFIDARTYKI-- 140 (313)
T ss_pred hhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeecc---CcceEEEEc-CCCCEEEEecCcccEEEEEecccce--
Confidence 7789999999999999999999999999999998888632 334457787 7899999999999999999998654
Q ss_pred cccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeCC
Q 003822 536 RGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFD 615 (793)
Q Consensus 536 ~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~D 615 (793)
...++....+..+.|+-+++.++.....|.|.|.....-+++..++ +|.....||.|+|+| ++||+|+.|
T Consensus 141 --------~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~-AH~snCicI~f~p~G-ryfA~GsAD 210 (313)
T KOG1407|consen 141 --------VNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIK-AHPSNCICIEFDPDG-RYFATGSAD 210 (313)
T ss_pred --------eehhcccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccc-cCCcceEEEEECCCC-ceEeecccc
Confidence 2223334567889998777888887778999999999999999999 799999999999999 899999999
Q ss_pred CeEEEEECCCCCccceEEccCCCCeE-EEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCC
Q 003822 616 QDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNG 694 (793)
Q Consensus 616 g~IrIWDlrt~~~~~~~~l~~~~~~v-sv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg 694 (793)
..+.+||+..- .+...+....-++ .+.||-||++||+|+.|..|-|=++.+|..+..+. ......+++|+|..
T Consensus 211 AlvSLWD~~EL--iC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~----~~~~t~tVAWHPk~ 284 (313)
T KOG1407|consen 211 ALVSLWDVDEL--ICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP----CEGPTFTVAWHPKR 284 (313)
T ss_pred ceeeccChhHh--hhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEee----ccCCceeEEecCCC
Confidence 99999999876 4445555555555 59999999999999999999999999999888874 56678899999998
Q ss_pred CeEEEEEeCC
Q 003822 695 RDYIVSGSCD 704 (793)
Q Consensus 695 ~~~L~Sgs~D 704 (793)
. +||-+.+|
T Consensus 285 ~-LLAyA~dd 293 (313)
T KOG1407|consen 285 P-LLAYACDD 293 (313)
T ss_pred c-eeeEEecC
Confidence 7 77666554
No 102
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=6.9e-20 Score=208.93 Aligned_cols=240 Identities=17% Similarity=0.243 Sum_probs=194.6
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCC-eEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCc
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENE-NIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS 534 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~-~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~ 534 (793)
-+.|+|.| +|..|++++.||.|++|+.... +....+. -+...|.+++- .++.|++|+.+++|.+|.+..++..
T Consensus 16 ~t~i~~d~-~gefi~tcgsdg~ir~~~~~sd~e~P~ti~--~~g~~v~~ia~---~s~~f~~~s~~~tv~~y~fps~~~~ 89 (933)
T KOG1274|consen 16 LTLICYDP-DGEFICTCGSDGDIRKWKTNSDEEEPETID--ISGELVSSIAC---YSNHFLTGSEQNTVLRYKFPSGEED 89 (933)
T ss_pred eEEEEEcC-CCCEEEEecCCCceEEeecCCcccCCchhh--ccCceeEEEee---cccceEEeeccceEEEeeCCCCCcc
Confidence 57899999 8999999999999999998665 3333332 26678888873 5679999999999999999887651
Q ss_pred ccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeC
Q 003822 535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSF 614 (793)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~ 614 (793)
.+.....-++.+++++.++..+++||+|-.|++.++.+......++ +|.++|.++.|+|.+ ++||+.+.
T Consensus 90 ---------~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lr-gh~apVl~l~~~p~~-~fLAvss~ 158 (933)
T KOG1274|consen 90 ---------TILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLR-GHDAPVLQLSYDPKG-NFLAVSSC 158 (933)
T ss_pred ---------ceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeec-ccCCceeeeeEcCCC-CEEEEEec
Confidence 1111223578999998888999999999999999999999999999 799999999999999 89999999
Q ss_pred CCeEEEEECCCCCccceEEcc-----CC-CCeE-EEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcEE
Q 003822 615 DQDVKLWDLRQKPIQPCYTAS-----SS-KGNV-MVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNYT 687 (793)
Q Consensus 615 Dg~IrIWDlrt~~~~~~~~l~-----~~-~~~v-sv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s 687 (793)
||.|++||+.++........- .. ..++ .++|+|+|..+++...|+.|++|+..++.....+.... .+..+..
T Consensus 159 dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~-~ss~~~~ 237 (933)
T KOG1274|consen 159 DGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKL-SSSKFSD 237 (933)
T ss_pred CceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccc-cccceEE
Confidence 999999999987443222110 01 1222 49999998888998899999999999998877775432 3334788
Q ss_pred EEEeeCCCeEEEEEeCCCcEEEEEEcCC
Q 003822 688 RSYYLNGRDYIVSGSCDEHVVRICCAQT 715 (793)
Q Consensus 688 ~afspdg~~~L~Sgs~Dg~II~IWDv~t 715 (793)
+.|+|.|. |||+++.||.| -|||+++
T Consensus 238 ~~wsPnG~-YiAAs~~~g~I-~vWnv~t 263 (933)
T KOG1274|consen 238 LQWSPNGK-YIAASTLDGQI-LVWNVDT 263 (933)
T ss_pred EEEcCCCc-EEeeeccCCcE-EEEeccc
Confidence 99999999 99999999999 9999987
No 103
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=1.1e-20 Score=187.26 Aligned_cols=240 Identities=14% Similarity=0.140 Sum_probs=183.7
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeE-EEEEeccCCCCCEEEEEEe-eCCCCEEEEEEcCCcEEEEEcCCCCCcccccccCC
Q 003822 465 ISCLMVFGTLDGEIVVVNHENENI-VSYIPSFGAMNSVLGLCWL-KKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGA 542 (793)
Q Consensus 465 d~~~Lasgs~DG~I~VWd~~t~~~-i~~l~~~~h~~~V~sv~fs-~~~g~~Lasgs~DgtV~vWDl~~~~~~~~~~~~~~ 542 (793)
.++.|||++.|++|+|+.+++... .....+.||.++|+.++|. |.-|.+||+++.||.|.||.-+.++-. ..
T Consensus 22 ygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~--k~---- 95 (299)
T KOG1332|consen 22 YGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWT--KA---- 95 (299)
T ss_pred hcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchh--hh----
Confidence 678999999999999999976543 3333344999999999996 346899999999999999999887431 11
Q ss_pred ceeEecCCCCeEEEEEccCC--CEEEEEECCCcEEEEECCCC--cEEEEEcccCCCCeEEEEEcCC---C----------
Q 003822 543 GTVTFDEFDQLTSVHVNSMD--ELFLASGYSKNIALYDINSG--RRLQVFADMHKEHINVVKFSNH---S---------- 605 (793)
Q Consensus 543 ~~~~~~~~~~V~sv~~s~~~--~~lla~g~Dg~I~IWDl~tg--~~l~~~~~gh~~~V~sv~fspd---g---------- 605 (793)
.....|...|++++|.|.+ -.+++++.||.|.|.+.+.. -....+..+|.-.|+++.|.|. |
T Consensus 96 -~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~ 174 (299)
T KOG1332|consen 96 -YEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAK 174 (299)
T ss_pred -hhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccc
Confidence 1122455789999998764 34555668999999988753 3334444479999999999986 2
Q ss_pred CcEEEEEeCCCeEEEEECCCCCccceEEccCCCCeEE-EEEecCC----CEEEEEeCCCeEEEEEcCCCcEEEEEeeecC
Q 003822 606 PSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVM-VCFSPDD----HYLLVSAVDNEVRQLLAVDGRVHLNFGITAT 680 (793)
Q Consensus 606 ~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~~~~vs-v~fSpdg----~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~ 680 (793)
.+.|++|+.|..|+||+...+......++.+|...+. ++|.|.- .+||+++.||++.||-........+......
T Consensus 175 ~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~ 254 (299)
T KOG1332|consen 175 VKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEE 254 (299)
T ss_pred cceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCccccccccc
Confidence 1569999999999999999876555566889998886 9999963 6799999999999998653211111111122
Q ss_pred CCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEc
Q 003822 681 GSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCA 713 (793)
Q Consensus 681 ~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv 713 (793)
-...++.++|++.|. +|+.++.|..+ .+|.-
T Consensus 255 f~~~~w~vSWS~sGn-~LaVs~GdNkv-tlwke 285 (299)
T KOG1332|consen 255 FPDVVWRVSWSLSGN-ILAVSGGDNKV-TLWKE 285 (299)
T ss_pred CCcceEEEEEecccc-EEEEecCCcEE-EEEEe
Confidence 346789999999999 89999999999 99954
No 104
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=2.8e-20 Score=190.02 Aligned_cols=286 Identities=15% Similarity=0.220 Sum_probs=210.1
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcc
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSI 535 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~ 535 (793)
..|+.|++ -|.+||+|+.||.|.|||+.+...-..+. +|..+|++++|+ ++|++|+|+|.|..|++||+..+..
T Consensus 26 a~~~~Fs~-~G~~lAvGc~nG~vvI~D~~T~~iar~ls--aH~~pi~sl~WS-~dgr~LltsS~D~si~lwDl~~gs~-- 99 (405)
T KOG1273|consen 26 AECCQFSR-WGDYLAVGCANGRVVIYDFDTFRIARMLS--AHVRPITSLCWS-RDGRKLLTSSRDWSIKLWDLLKGSP-- 99 (405)
T ss_pred cceEEecc-CcceeeeeccCCcEEEEEccccchhhhhh--ccccceeEEEec-CCCCEeeeecCCceeEEEeccCCCc--
Confidence 57899999 99999999999999999999988766666 899999999998 8999999999999999999998765
Q ss_pred cccccCCceeEecCCCCeEEEEEccCCCEEEEEE-CCCcEEEEECCCCcEEEEEc----ccC-CCCeEEEEEcCCCCcEE
Q 003822 536 RGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASG-YSKNIALYDINSGRRLQVFA----DMH-KEHINVVKFSNHSPSIF 609 (793)
Q Consensus 536 ~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g-~Dg~I~IWDl~tg~~l~~~~----~gh-~~~V~sv~fspdg~~~L 609 (793)
...+...++|+.+.|+|.+...+++. .+..-.+.++..++ +++. .+. .....+..|.+.| +++
T Consensus 100 --------l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~--h~~Lp~d~d~dln~sas~~~fdr~g-~yI 168 (405)
T KOG1273|consen 100 --------LKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPK--HSVLPKDDDGDLNSSASHGVFDRRG-KYI 168 (405)
T ss_pred --------eeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCc--eeeccCCCccccccccccccccCCC-CEE
Confidence 22344457899999999876555554 45445555555422 2221 011 1112234688888 899
Q ss_pred EEEeCCCeEEEEECCCCCccceEEccCCCCeEEEEEecCCCEEEEEeCCCeEEEEEcCCC-------cEEEEEeeec-CC
Q 003822 610 ATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLVSAVDNEVRQLLAVDG-------RVHLNFGITA-TG 681 (793)
Q Consensus 610 aTgs~Dg~IrIWDlrt~~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg-------~~~~~l~~~~-~~ 681 (793)
++|...|.+.++|..+.++...+.......+-.+.++-.|+.++.-+.|..||.|+...- ......+... -.
T Consensus 169 itGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVN 248 (405)
T KOG1273|consen 169 ITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVN 248 (405)
T ss_pred EEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHh
Confidence 999999999999999987666665554344446999999999999999999999997631 1110000000 01
Q ss_pred CCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCCCCccceeeeccCCccccCCccEEEEEEcCCCCc
Q 003822 682 SSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKS 761 (793)
Q Consensus 682 ~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~~~ 761 (793)
...-..++|+.+|. |+++|+.-..-++||.-..|.+++ .|.|.. |+ ....+.|||. +.
T Consensus 249 k~~Wk~ccfs~dge-Yv~a~s~~aHaLYIWE~~~GsLVK--ILhG~k-----------gE-------~l~DV~whp~-rp 306 (405)
T KOG1273|consen 249 KLQWKKCCFSGDGE-YVCAGSARAHALYIWEKSIGSLVK--ILHGTK-----------GE-------ELLDVNWHPV-RP 306 (405)
T ss_pred hhhhhheeecCCcc-EEEeccccceeEEEEecCCcceee--eecCCc-----------hh-------heeecccccc-ee
Confidence 12234678899998 888888766656999999999999 888865 22 4678899995 22
Q ss_pred eeeEeeEEEeCCCcEEEEcCCCCC
Q 003822 762 EIVKVNLLASTDHCDKECSHGQHS 785 (793)
Q Consensus 762 ~iv~~~ltaS~Dg~VkvW~~~~~~ 785 (793)
.|+ .-+.|.|.+|......
T Consensus 307 ~i~-----si~sg~v~iw~~~~~e 325 (405)
T KOG1273|consen 307 IIA-----SIASGVVYIWAVVQVE 325 (405)
T ss_pred eee-----eccCCceEEEEeeccc
Confidence 222 2278999999976554
No 105
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=5.6e-21 Score=214.10 Aligned_cols=286 Identities=16% Similarity=0.153 Sum_probs=212.8
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeE--EEEEeccC---CCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCC
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENI--VSYIPSFG---AMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRH 530 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~--i~~l~~~~---h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~ 530 (793)
..+|+.++ +...++.++. ..+.||.++.... ...+...+ -...+..|.|.....++|||++..|.|.+||+..
T Consensus 42 ~nAIs~nr-~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk 119 (839)
T KOG0269|consen 42 ANAISVNR-DINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNK 119 (839)
T ss_pred cceEeecC-CcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecCc
Confidence 56777888 5556666653 3577777653221 11111101 1234667889866789999999999999999987
Q ss_pred C--CCcccccccCCceeEecCCCCeEEEEEccCCCEEEEE-ECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCc
Q 003822 531 M--PPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLAS-GYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPS 607 (793)
Q Consensus 531 ~--~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~-g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~ 607 (793)
. +..+. +.-.|...+++++|++....++.+ +.||+|++||++..+...++. +....|+.|+|+|..++
T Consensus 120 ~~rnk~l~--------~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~-~nSESiRDV~fsp~~~~ 190 (839)
T KOG0269|consen 120 SIRNKLLT--------VFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFR-SNSESIRDVKFSPGYGN 190 (839)
T ss_pred cccchhhh--------HhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccccccccc-ccchhhhceeeccCCCc
Confidence 3 11111 122455779999999988665554 579999999999999999988 58899999999998889
Q ss_pred EEEEEeCCCeEEEEECCCCCccceEEccCCCCeE-EEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcE
Q 003822 608 IFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNY 686 (793)
Q Consensus 608 ~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~~~~v-sv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~ 686 (793)
.|+++...|.+.+||+|... ++...+..|.+++ ++.|+|++.+||+|+.|+.|+|||..+++.-....+ .....+.
T Consensus 191 ~F~s~~dsG~lqlWDlRqp~-r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tI--nTiapv~ 267 (839)
T KOG0269|consen 191 KFASIHDSGYLQLWDLRQPD-RCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTI--NTIAPVG 267 (839)
T ss_pred eEEEecCCceEEEeeccCch-hHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEE--eecceee
Confidence 99999999999999999853 5566777788777 699999999999999999999999987654333332 2345677
Q ss_pred EEEEeeCCCeEEEEEeC--CCcEEEEEEcCCCcEEEeeeecCCCCCccceeeeccCCccccCCccEEEEEEcCCCCceee
Q 003822 687 TRSYYLNGRDYIVSGSC--DEHVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKSEIV 764 (793)
Q Consensus 687 s~afspdg~~~L~Sgs~--Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~~~~iv 764 (793)
.+.|-|..+..|++++. |-.| +|||+...-.-. ..|..|...|..++|.......++
T Consensus 268 rVkWRP~~~~hLAtcsmv~dtsV-~VWDvrRPYIP~--------------------~t~~eH~~~vt~i~W~~~d~~~l~ 326 (839)
T KOG0269|consen 268 RVKWRPARSYHLATCSMVVDTSV-HVWDVRRPYIPY--------------------ATFLEHTDSVTGIAWDSGDRINLW 326 (839)
T ss_pred eeeeccCccchhhhhhccccceE-EEEeeccccccc--------------------eeeeccCccccceeccCCCceeeE
Confidence 89999999877877653 5577 999997654333 445567778999999886666666
Q ss_pred EeeEEEeCCCcEEEEc
Q 003822 765 KVNLLASTDHCDKECS 780 (793)
Q Consensus 765 ~~~ltaS~Dg~VkvW~ 780 (793)
++|.||+|-.-.
T Consensus 327 ----s~sKD~tv~qh~ 338 (839)
T KOG0269|consen 327 ----SCSKDGTVLQHL 338 (839)
T ss_pred ----eecCccHHHHhh
Confidence 889998865433
No 106
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.86 E-value=5.8e-21 Score=194.34 Aligned_cols=245 Identities=17% Similarity=0.250 Sum_probs=201.0
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcc
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSI 535 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~ 535 (793)
|+++.||| ...+|++|+.|++|+++|..+....+.++......+|.++.|+ |.|.++++|..-.++++||+++.++.+
T Consensus 175 vn~l~FHP-re~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfH-PsGefllvgTdHp~~rlYdv~T~Qcfv 252 (430)
T KOG0640|consen 175 VNDLDFHP-RETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFH-PSGEFLLVGTDHPTLRLYDVNTYQCFV 252 (430)
T ss_pred ccceeecc-hhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeec-CCCceEEEecCCCceeEEeccceeEee
Confidence 89999999 8899999999999999999865544444433556789999998 789999999999999999999987743
Q ss_pred cccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCC-CeEEEEEcCCCCcEEEEEeC
Q 003822 536 RGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKE-HINVVKFSNHSPSIFATSSF 614 (793)
Q Consensus 536 ~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~-~V~sv~fspdg~~~LaTgs~ 614 (793)
... ..-+|.+.|+++.+++.+...++++.||.|++||=-+++++.++..+|.+ .|.+..|..+| +++++++.
T Consensus 253 san------Pd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~-kyiLsSG~ 325 (430)
T KOG0640|consen 253 SAN------PDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNG-KYILSSGK 325 (430)
T ss_pred ecC------cccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCC-eEEeecCC
Confidence 322 12356688999999999999999999999999999999999999877865 68889999998 89999999
Q ss_pred CCeEEEEECCCCCccceEEccCCCCeE----EEEEecCCCEEEEEe-CCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEE
Q 003822 615 DQDVKLWDLRQKPIQPCYTASSSKGNV----MVCFSPDDHYLLVSA-VDNEVRQLLAVDGRVHLNFGITATGSSQNYTRS 689 (793)
Q Consensus 615 Dg~IrIWDlrt~~~~~~~~l~~~~~~v----sv~fSpdg~~Lasgs-~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~a 689 (793)
|..+++|.+.++.+...++..+..+.. ...|.....|++.-. ..+.+.-||.+++..+..+. .+|...+..+.
T Consensus 326 DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~s--lgHn~a~R~i~ 403 (430)
T KOG0640|consen 326 DSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLS--LGHNGAVRWIV 403 (430)
T ss_pred cceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcc--cCCCCCceEEE
Confidence 999999999999777666655443332 266777777776654 35788999999987655554 35666777788
Q ss_pred EeeCCCeEEEEEeCCCcEEEEEEc
Q 003822 690 YYLNGRDYIVSGSCDEHVVRICCA 713 (793)
Q Consensus 690 fspdg~~~L~Sgs~Dg~II~IWDv 713 (793)
-+|.+. .++++|.|-++ |+|--
T Consensus 404 HSP~~p-~FmTcsdD~ra-RFWyr 425 (430)
T KOG0640|consen 404 HSPVEP-AFMTCSDDFRA-RFWYR 425 (430)
T ss_pred eCCCCC-ceeeeccccee-eeeee
Confidence 889888 99999999999 99954
No 107
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.86 E-value=3.2e-21 Score=196.77 Aligned_cols=240 Identities=10% Similarity=0.147 Sum_probs=204.7
Q ss_pred ceEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCc
Q 003822 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS 534 (793)
Q Consensus 455 ~V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~ 534 (793)
+|.|+.|+. |..++|+|+.||.|+||.+++|++++.+.- .|+..|+++.|+ .++..+++++.|.++++.-+.+++..
T Consensus 265 aVlci~FSR-DsEMlAsGsqDGkIKvWri~tG~ClRrFdr-AHtkGvt~l~FS-rD~SqiLS~sfD~tvRiHGlKSGK~L 341 (508)
T KOG0275|consen 265 AVLCISFSR-DSEMLASGSQDGKIKVWRIETGQCLRRFDR-AHTKGVTCLSFS-RDNSQILSASFDQTVRIHGLKSGKCL 341 (508)
T ss_pred ceEEEeecc-cHHHhhccCcCCcEEEEEEecchHHHHhhh-hhccCeeEEEEc-cCcchhhcccccceEEEeccccchhH
Confidence 499999999 999999999999999999999999887754 799999999998 78899999999999999999998762
Q ss_pred ccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcc-cCCCCeEEEEEcCCCCcEEEEEe
Q 003822 535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFAD-MHKEHINVVKFSNHSPSIFATSS 613 (793)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~-gh~~~V~sv~fspdg~~~LaTgs 613 (793)
.... .|.+.|+...|.+++..+++++.||+|++|+..+++++.+|+. +...+|+++..-|..+..++.|.
T Consensus 342 -KEfr--------GHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCN 412 (508)
T KOG0275|consen 342 -KEFR--------GHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCN 412 (508)
T ss_pred -HHhc--------CccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEc
Confidence 2222 2346688999999999999999999999999999999999984 35568999999999999999999
Q ss_pred CCCeEEEEECCCCCccceEEc-c-CCCCeEEEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEe
Q 003822 614 FDQDVKLWDLRQKPIQPCYTA-S-SSKGNVMVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYY 691 (793)
Q Consensus 614 ~Dg~IrIWDlrt~~~~~~~~l-~-~~~~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afs 691 (793)
..++|.|.++...- ...+.. . .....++.+.||.|.++++.+.|+.++.|...+|++.+++.. +...+..++-+
T Consensus 413 rsntv~imn~qGQv-VrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~V---hEkdvIGl~HH 488 (508)
T KOG0275|consen 413 RSNTVYIMNMQGQV-VRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPV---HEKDVIGLTHH 488 (508)
T ss_pred CCCeEEEEeccceE-EeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeec---ccccccccccC
Confidence 99999999987632 222221 1 122445789999999999999999999999999999888864 56678888888
Q ss_pred eCCCeEEEEEeCCCcEEEEEE
Q 003822 692 LNGRDYIVSGSCDEHVVRICC 712 (793)
Q Consensus 692 pdg~~~L~Sgs~Dg~II~IWD 712 (793)
|... .+++-+.||.+ ++|.
T Consensus 489 PHqN-llAsYsEDgll-KLWk 507 (508)
T KOG0275|consen 489 PHQN-LLASYSEDGLL-KLWK 507 (508)
T ss_pred cccc-hhhhhcccchh-hhcC
Confidence 8887 99999999999 9994
No 108
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.86 E-value=5.6e-20 Score=196.16 Aligned_cols=265 Identities=16% Similarity=0.192 Sum_probs=204.4
Q ss_pred CCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCc---ccc---cc--cCCceeE-ecCCCCeEEEEEccCCCEEE
Q 003822 496 GAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS---IRG---MH--YGAGTVT-FDEFDQLTSVHVNSMDELFL 566 (793)
Q Consensus 496 ~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~---~~~---~~--~~~~~~~-~~~~~~V~sv~~s~~~~~ll 566 (793)
.|.-+|++++++ +++.+.++++.||+|.-|++.+++.. +.. .. +...... -.|...+.++++++++.+++
T Consensus 140 ~H~~s~~~vals-~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkyla 218 (479)
T KOG0299|consen 140 KHQLSVTSVALS-PDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLA 218 (479)
T ss_pred cccCcceEEEee-ccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEE
Confidence 688899999986 78899999999999999999987742 111 11 1111111 15667899999999999999
Q ss_pred EEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEECCCCCccceEEccCCCCeE-EEEE
Q 003822 567 ASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCF 645 (793)
Q Consensus 567 a~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~~~~v-sv~f 645 (793)
+++.|..|.|||.++.+.++.+. +|.+.|.+++|-... .-+++++.|++|++|++... ..+-++.+|...+ .+..
T Consensus 219 tgg~d~~v~Iw~~~t~ehv~~~~-ghr~~V~~L~fr~gt-~~lys~s~Drsvkvw~~~~~--s~vetlyGHqd~v~~Ida 294 (479)
T KOG0299|consen 219 TGGRDRHVQIWDCDTLEHVKVFK-GHRGAVSSLAFRKGT-SELYSASADRSVKVWSIDQL--SYVETLYGHQDGVLGIDA 294 (479)
T ss_pred ecCCCceEEEecCcccchhhccc-ccccceeeeeeecCc-cceeeeecCCceEEEehhHh--HHHHHHhCCccceeeech
Confidence 99999999999999999999999 799999999998554 88999999999999999875 3344555666555 5777
Q ss_pred ecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEEeeeec
Q 003822 646 SPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRLRDISLE 725 (793)
Q Consensus 646 Spdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~ 725 (793)
..-++.+-+|+.|.++++|++.....+. +. ++...+-+++|-.+. .+++||+||.| .+|++.+.+++....+
T Consensus 295 L~reR~vtVGgrDrT~rlwKi~eesqli-fr---g~~~sidcv~~In~~--HfvsGSdnG~I-aLWs~~KKkplf~~~~- 366 (479)
T KOG0299|consen 295 LSRERCVTVGGRDRTVRLWKIPEESQLI-FR---GGEGSIDCVAFINDE--HFVSGSDNGSI-ALWSLLKKKPLFTSRL- 366 (479)
T ss_pred hcccceEEeccccceeEEEeccccceee-ee---CCCCCeeeEEEeccc--ceeeccCCceE-EEeeecccCceeEeec-
Confidence 7778888888899999999996544322 22 355567777777776 59999999999 9999999999983333
Q ss_pred CCCCCccceeeeccCCccccCCccEEEEEEcCCCCceeeEeeEEEeCCCcEEEEcCCCCCC
Q 003822 726 GKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKSEIVKVNLLASTDHCDKECSHGQHSR 786 (793)
Q Consensus 726 gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~~~~iv~~~ltaS~Dg~VkvW~~~~~~~ 786 (793)
.|...+. + +-..+...|++++-.| +.+.++ +||.+|.||+|...+..+
T Consensus 367 AHgv~~~-----~---~~~~~~~Witsla~i~-~sdL~a----sGS~~G~vrLW~i~~g~r 414 (479)
T KOG0299|consen 367 AHGVIPE-----L---DPVNGNFWITSLAVIP-GSDLLA----SGSWSGCVRLWKIEDGLR 414 (479)
T ss_pred cccccCC-----c---cccccccceeeeEecc-cCceEE----ecCCCCceEEEEecCCcc
Confidence 3331111 0 1112235899999999 777777 999999999999988844
No 109
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.86 E-value=7.5e-19 Score=187.66 Aligned_cols=241 Identities=11% Similarity=0.110 Sum_probs=176.7
Q ss_pred eEEEEEeCCCCCEE-EEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEE-EEcCCcEEEEEcCCCCC
Q 003822 456 PRQFEYHPSISCLM-VFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIA-GSDNGSLKLYDIRHMPP 533 (793)
Q Consensus 456 V~~vafsP~d~~~L-asgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Las-gs~DgtV~vWDl~~~~~ 533 (793)
+.+++|+| ++..+ ++++.++.|++||..+++....+. .+. .+..++|+ ++++.+++ ++.|+.|++||+.+.+.
T Consensus 33 ~~~l~~~~-dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~--~~~-~~~~~~~~-~~g~~l~~~~~~~~~l~~~d~~~~~~ 107 (300)
T TIGR03866 33 PRGITLSK-DGKLLYVCASDSDTIQVIDLATGEVIGTLP--SGP-DPELFALH-PNGKILYIANEDDNLVTVIDIETRKV 107 (300)
T ss_pred CCceEECC-CCCEEEEEECCCCeEEEEECCCCcEEEecc--CCC-CccEEEEC-CCCCEEEEEcCCCCeEEEEECCCCeE
Confidence 56799999 77765 677789999999999988877665 232 35678887 67776654 45689999999987543
Q ss_pred cccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCC-cEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEE-EE
Q 003822 534 SIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSK-NIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIF-AT 611 (793)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg-~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~L-aT 611 (793)
. ..+.....+.+++++|++..+++++.++ .+.+||..+++....+. ....+..++|+|++ ..+ ++
T Consensus 108 ~----------~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~--~~~~~~~~~~s~dg-~~l~~~ 174 (300)
T TIGR03866 108 L----------AEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVL--VDQRPRFAEFTADG-KELWVS 174 (300)
T ss_pred E----------eEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEE--cCCCccEEEECCCC-CEEEEE
Confidence 1 1122223467899999898888887654 57788999888776654 33456789999999 555 55
Q ss_pred EeCCCeEEEEECCCCCccceEEccC------CCCeEEEEEecCCCEEEEE-eCCCeEEEEEcCCCcEEEEEeeecCCCCC
Q 003822 612 SSFDQDVKLWDLRQKPIQPCYTASS------SKGNVMVCFSPDDHYLLVS-AVDNEVRQLLAVDGRVHLNFGITATGSSQ 684 (793)
Q Consensus 612 gs~Dg~IrIWDlrt~~~~~~~~l~~------~~~~vsv~fSpdg~~Lasg-s~Dg~I~IwDl~tg~~~~~l~~~~~~~~~ 684 (793)
+..++.|++||+++++....+.... ...+..++|+|+|++++++ +.++.+.+||..+++....+. ....
T Consensus 175 ~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~----~~~~ 250 (300)
T TIGR03866 175 SEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL----VGQR 250 (300)
T ss_pred cCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE----eCCC
Confidence 5679999999999875433332221 1123358899999986654 456789999999988765543 2346
Q ss_pred cEEEEEeeCCCeEEEEE-eCCCcEEEEEEcCCCcEEE
Q 003822 685 NYTRSYYLNGRDYIVSG-SCDEHVVRICCAQTGRRLR 720 (793)
Q Consensus 685 v~s~afspdg~~~L~Sg-s~Dg~II~IWDv~tg~~l~ 720 (793)
+..++|+|+|+ +|+++ +.++.| ++||+.+++.+.
T Consensus 251 ~~~~~~~~~g~-~l~~~~~~~~~i-~v~d~~~~~~~~ 285 (300)
T TIGR03866 251 VWQLAFTPDEK-YLLTTNGVSNDV-SVIDVAALKVIK 285 (300)
T ss_pred cceEEECCCCC-EEEEEcCCCCeE-EEEECCCCcEEE
Confidence 78899999999 66665 568898 999999999998
No 110
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.85 E-value=2.9e-20 Score=199.08 Aligned_cols=279 Identities=16% Similarity=0.196 Sum_probs=218.2
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCC---eEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCC
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENE---NIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMP 532 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~---~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~ 532 (793)
|.++.++. ..+.+.||+ .|.|+|||+... ..+..+.......-|.++..+ ++|+.|++|+.-.++.|||+....
T Consensus 422 VcAvtIS~-~trhVyTgG-kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~-pdgrtLivGGeastlsiWDLAapT 498 (705)
T KOG0639|consen 422 VCAVTISN-PTRHVYTGG-KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLL-PDGRTLIVGGEASTLSIWDLAAPT 498 (705)
T ss_pred EEEEEecC-CcceeEecC-CCeEEEeeccCCCCCCccccccccCcccceeeeEec-CCCceEEeccccceeeeeeccCCC
Confidence 67788888 778899998 577999998642 244444443445678888877 899999999999999999998866
Q ss_pred CcccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEE
Q 003822 533 PSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATS 612 (793)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTg 612 (793)
..+....... .-..++++.+|+....+++..||.|.|||+.....++.|+ ||++.+.||..+++| ..|.||
T Consensus 499 prikaeltss-------apaCyALa~spDakvcFsccsdGnI~vwDLhnq~~Vrqfq-GhtDGascIdis~dG-tklWTG 569 (705)
T KOG0639|consen 499 PRIKAELTSS-------APACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQ-GHTDGASCIDISKDG-TKLWTG 569 (705)
T ss_pred cchhhhcCCc-------chhhhhhhcCCccceeeeeccCCcEEEEEcccceeeeccc-CCCCCceeEEecCCC-ceeecC
Confidence 5333221111 1235778898999999999999999999999999999999 799999999999999 899999
Q ss_pred eCCCeEEEEECCCCCccceEEccCCCCeEEEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEee
Q 003822 613 SFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYL 692 (793)
Q Consensus 613 s~Dg~IrIWDlrt~~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afsp 692 (793)
+-|++||.||+|.+.....+.+ ...+.++.++|.+.++++|-.++.+.|........ ..+. .+.+.|.++.|.+
T Consensus 570 GlDntvRcWDlregrqlqqhdF--~SQIfSLg~cP~~dWlavGMens~vevlh~skp~k-yqlh---lheScVLSlKFa~ 643 (705)
T KOG0639|consen 570 GLDNTVRCWDLREGRQLQQHDF--SSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEK-YQLH---LHESCVLSLKFAY 643 (705)
T ss_pred CCccceeehhhhhhhhhhhhhh--hhhheecccCCCccceeeecccCcEEEEecCCccc-eeec---ccccEEEEEEecc
Confidence 9999999999999854433333 34677899999999999999999888887654433 2232 3667899999999
Q ss_pred CCCeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCCCCccceeeeccCCccccCCccEEEEEEcCCCCceeeEeeEEEeC
Q 003822 693 NGRDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKSEIVKVNLLAST 772 (793)
Q Consensus 693 dg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~~~~iv~~~ltaS~ 772 (793)
.|+ ++++.+.|.-+ ..|....|..+. ..+.. ++|++...+-+ ...|+ +||.
T Consensus 644 cGk-wfvStGkDnlL-nawrtPyGasiF--qskE~--------------------SsVlsCDIS~d-dkyIV----TGSG 694 (705)
T KOG0639|consen 644 CGK-WFVSTGKDNLL-NAWRTPYGASIF--QSKES--------------------SSVLSCDISFD-DKYIV----TGSG 694 (705)
T ss_pred cCc-eeeecCchhhh-hhccCcccccee--ecccc--------------------CcceeeeeccC-ceEEE----ecCC
Confidence 999 99999999998 999999998877 33322 36888777774 33444 8999
Q ss_pred CCcEEEEcC
Q 003822 773 DHCDKECSH 781 (793)
Q Consensus 773 Dg~VkvW~~ 781 (793)
|...-|+..
T Consensus 695 dkkATVYeV 703 (705)
T KOG0639|consen 695 DKKATVYEV 703 (705)
T ss_pred CcceEEEEE
Confidence 977667653
No 111
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.85 E-value=4e-20 Score=203.48 Aligned_cols=288 Identities=17% Similarity=0.218 Sum_probs=202.3
Q ss_pred EEEeC--CCCCEEEEEeCCCeEEEEECCCCeEE---E-EEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCC
Q 003822 459 FEYHP--SISCLMVFGTLDGEIVVVNHENENIV---S-YIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMP 532 (793)
Q Consensus 459 vafsP--~d~~~Lasgs~DG~I~VWd~~t~~~i---~-~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~ 532 (793)
..|++ ....+|+.+.+||.|.++|....+.. . ......|.+.|..+.|. +....|++++.|.++++||+++..
T Consensus 55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wa-pge~~lVsasGDsT~r~Wdvk~s~ 133 (720)
T KOG0321|consen 55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWA-PGESLLVSASGDSTIRPWDVKTSR 133 (720)
T ss_pred ccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccC-CCceeEEEccCCceeeeeeeccce
Confidence 44443 45678999999999999998654322 1 11223799999999998 466789999999999999999876
Q ss_pred CcccccccCCceeEecCCCCeEEEEEccCCCEEEEE-ECCCcEEEEECCCCc--------------------EEE-----
Q 003822 533 PSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLAS-GYSKNIALYDINSGR--------------------RLQ----- 586 (793)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~-g~Dg~I~IWDl~tg~--------------------~l~----- 586 (793)
..- ..+.+.|...|.+++|.+.+..+++. |.||.|.|||++-.. +.+
T Consensus 134 l~G-------~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr 206 (720)
T KOG0321|consen 134 LVG-------GRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKR 206 (720)
T ss_pred eec-------ceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcc
Confidence 521 12456788899999999988765554 579999999997422 000
Q ss_pred --EEcccCCCCeEE---EEEcCCCCcEEEEEeC-CCeEEEEECCCCCc------cceEEccCC----CCeEEEEEecCCC
Q 003822 587 --VFADMHKEHINV---VKFSNHSPSIFATSSF-DQDVKLWDLRQKPI------QPCYTASSS----KGNVMVCFSPDDH 650 (793)
Q Consensus 587 --~~~~gh~~~V~s---v~fspdg~~~LaTgs~-Dg~IrIWDlrt~~~------~~~~~l~~~----~~~vsv~fSpdg~ 650 (793)
..+ +|...|.+ +.+..|. ..||+++. |+.|+|||+|+... .....++.+ .+.+++.....|.
T Consensus 207 ~~k~k-A~s~ti~ssvTvv~fkDe-~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt 284 (720)
T KOG0321|consen 207 IRKWK-AASNTIFSSVTVVLFKDE-STLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGT 284 (720)
T ss_pred ccccc-cccCceeeeeEEEEEecc-ceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCC
Confidence 001 23334443 4444565 68888887 99999999997521 122222222 2445677778899
Q ss_pred EEEEEeCCCeEEEEEcCCCcE--EEEEeeecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCC
Q 003822 651 YLLVSAVDNEVRQLLAVDGRV--HLNFGITATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKG 728 (793)
Q Consensus 651 ~Lasgs~Dg~I~IwDl~tg~~--~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~ 728 (793)
+|++.+.|+.|+.|++.+-.. +..+.+.. ....-..-..+|+|. ++++|+.|+.. ++|.+.+.+.-- ..+.
T Consensus 285 ~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~-~~sf~vks~lSpd~~-~l~SgSsd~~a-yiw~vs~~e~~~-~~l~--- 357 (720)
T KOG0321|consen 285 YLFASCTDNSIYFYNMRSLSISPVAEFSGKL-NSSFYVKSELSPDDC-SLLSGSSDEQA-YIWVVSSPEAPP-ALLL--- 357 (720)
T ss_pred eEEEEecCCcEEEEeccccCcCchhhccCcc-cceeeeeeecCCCCc-eEeccCCCcce-eeeeecCccCCh-hhhh---
Confidence 999999999999999886432 22222111 111122334688998 99999999999 999987765432 0233
Q ss_pred CCccceeeeccCCccccCCccEEEEEEcCCCCceeeEeeEEEeCCCcEEEEcCCC
Q 003822 729 SGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKSEIVKVNLLASTDHCDKECSHGQ 783 (793)
Q Consensus 729 ~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~~~~iv~~~ltaS~Dg~VkvW~~~~ 783 (793)
+|...|+.|.|.|.....++ ++|.|-++++|++..
T Consensus 358 ----------------Ght~eVt~V~w~pS~~t~v~----TcSdD~~~kiW~l~~ 392 (720)
T KOG0321|consen 358 ----------------GHTREVTTVRWLPSATTPVA----TCSDDFRVKIWRLSN 392 (720)
T ss_pred ----------------CcceEEEEEeeccccCCCce----eeccCcceEEEeccC
Confidence 45567999999998777888 899999999999843
No 112
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=7.3e-20 Score=195.15 Aligned_cols=285 Identities=12% Similarity=0.140 Sum_probs=219.6
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCC--eEEEEEeccCCCCCEEEEEEeeCCCC-EEEEEEcCCcEEEEEcCCCC
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENE--NIVSYIPSFGAMNSVLGLCWLKKYPS-KLIAGSDNGSLKLYDIRHMP 532 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~--~~i~~l~~~~h~~~V~sv~fs~~~g~-~Lasgs~DgtV~vWDl~~~~ 532 (793)
|++|.||| ...++++++.||+++||.++.. ..++.+.+ -..+|.+.+|. ++|. .+++++....++.||+.+.+
T Consensus 216 I~sv~FHp-~~plllvaG~d~~lrifqvDGk~N~~lqS~~l--~~fPi~~a~f~-p~G~~~i~~s~rrky~ysyDle~ak 291 (514)
T KOG2055|consen 216 ITSVQFHP-TAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHL--EKFPIQKAEFA-PNGHSVIFTSGRRKYLYSYDLETAK 291 (514)
T ss_pred ceEEEecC-CCceEEEecCCCcEEEEEecCccChhheeeee--ccCccceeeec-CCCceEEEecccceEEEEeeccccc
Confidence 89999999 8899999999999999988632 34555543 34689999998 5676 89999999999999999876
Q ss_pred Ccc-cccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEE
Q 003822 533 PSI-RGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFAT 611 (793)
Q Consensus 533 ~~~-~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaT 611 (793)
... ....+.. ...+....+++.++.++..|..|.|.+....+++.+.+++ -.+.|..++|+.++ ..|++
T Consensus 292 ~~k~~~~~g~e-------~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K--ieG~v~~~~fsSds-k~l~~ 361 (514)
T KOG2055|consen 292 VTKLKPPYGVE-------EKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK--IEGVVSDFTFSSDS-KELLA 361 (514)
T ss_pred cccccCCCCcc-------cchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee--eccEEeeEEEecCC-cEEEE
Confidence 522 2222111 1345667788899999999999999999999999999998 78899999999999 78888
Q ss_pred EeCCCeEEEEECCCCCccceEEccCCCCeEEEEEecCCCEEEEEeCCCeEEEEEcCCC------cEEEEEeeecCCCCCc
Q 003822 612 SSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLVSAVDNEVRQLLAVDG------RVHLNFGITATGSSQN 685 (793)
Q Consensus 612 gs~Dg~IrIWDlrt~~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg------~~~~~l~~~~~~~~~v 685 (793)
++.+|.|.+||++...+...+.-.+.....+++.|++|.|+|+|+..|.|.|||..+. +++.++. .-...|
T Consensus 362 ~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~d---NLtt~I 438 (514)
T KOG2055|consen 362 SGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVD---NLTTAI 438 (514)
T ss_pred EcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhh---hhheee
Confidence 8889999999999997777777666666667999999999999999999999996542 3333332 234568
Q ss_pred EEEEEeeCCCeEEEEEeC--CCcEEEEEEcCCCcEEEeeeecCCCCCccceeeeccCCccccCCccEEEEEEcCCCCcee
Q 003822 686 YTRSYYLNGRDYIVSGSC--DEHVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKSEI 763 (793)
Q Consensus 686 ~s~afspdg~~~L~Sgs~--Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~~~~i 763 (793)
.++.|++|++ +|+.+|. +..+ |+-.+.+..... . |..+ ...-+.|++++|+|. ...+
T Consensus 439 tsl~Fn~d~q-iLAiaS~~~knal-rLVHvPS~TVFs--N----------fP~~------n~~vg~vtc~aFSP~-sG~l 497 (514)
T KOG2055|consen 439 TSLQFNHDAQ-ILAIASRVKKNAL-RLVHVPSCTVFS--N----------FPTS------NTKVGHVTCMAFSPN-SGYL 497 (514)
T ss_pred eeeeeCcchh-hhhhhhhccccce-EEEeccceeeec--c----------CCCC------CCcccceEEEEecCC-CceE
Confidence 8999999999 7766654 4466 887776655443 1 1111 011236999999995 4455
Q ss_pred eEeeEEEeCCCcEEEEcCC
Q 003822 764 VKVNLLASTDHCDKECSHG 782 (793)
Q Consensus 764 v~~~ltaS~Dg~VkvW~~~ 782 (793)
+ +|..+|.|.+|.+.
T Consensus 498 A----vGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 498 A----VGNEAGRVHLFKLH 512 (514)
T ss_pred E----eecCCCceeeEeec
Confidence 5 78999999999863
No 113
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.85 E-value=4.7e-19 Score=190.36 Aligned_cols=313 Identities=15% Similarity=0.158 Sum_probs=222.7
Q ss_pred ceEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCc
Q 003822 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS 534 (793)
Q Consensus 455 ~V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~ 534 (793)
.|.|++|.+ +++ +++|..+|.|.||+..+.+..+... .|.+.|.+++.. .+| .|++|+.|+.|..||-.-.+..
T Consensus 248 ~Vl~v~F~e-ngd-viTgDS~G~i~Iw~~~~~~~~k~~~--aH~ggv~~L~~l-r~G-tllSGgKDRki~~Wd~~y~k~r 321 (626)
T KOG2106|consen 248 FVLCVTFLE-NGD-VITGDSGGNILIWSKGTNRISKQVH--AHDGGVFSLCML-RDG-TLLSGGKDRKIILWDDNYRKLR 321 (626)
T ss_pred EEEEEEEcC-CCC-EEeecCCceEEEEeCCCceEEeEee--ecCCceEEEEEe-cCc-cEeecCccceEEeccccccccc
Confidence 399999999 664 7899999999999998877777665 899999999986 555 5666999999999993321110
Q ss_pred cccc-------------------------------ccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCc
Q 003822 535 IRGM-------------------------------HYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGR 583 (793)
Q Consensus 535 ~~~~-------------------------------~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~ 583 (793)
...+ ........+.|.+..+.++.+|..+.++++|.|+.+++|+ ..+
T Consensus 322 ~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k 399 (626)
T KOG2106|consen 322 ETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHK 399 (626)
T ss_pred cccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCc
Confidence 0000 0112234456778899999999999999999999999999 566
Q ss_pred EEEEEcccCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEECCCCCccceEEccCCCCeEEEEEecCCCEEEEEeCCCeEEE
Q 003822 584 RLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLVSAVDNEVRQ 663 (793)
Q Consensus 584 ~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs~Dg~I~I 663 (793)
++.+.. -..++.|+.|+|.| .+|.|+..|...+.|..+.....+.+- ......++|+|+|.+||+|+.|+.|++
T Consensus 400 ~~wt~~--~~d~~~~~~fhpsg--~va~Gt~~G~w~V~d~e~~~lv~~~~d--~~~ls~v~ysp~G~~lAvgs~d~~iyi 473 (626)
T KOG2106|consen 400 LEWTKI--IEDPAECADFHPSG--VVAVGTATGRWFVLDTETQDLVTIHTD--NEQLSVVRYSPDGAFLAVGSHDNHIYI 473 (626)
T ss_pred eeEEEE--ecCceeEeeccCcc--eEEEeeccceEEEEecccceeEEEEec--CCceEEEEEcCCCCEEEEecCCCeEEE
Confidence 666665 56789999999998 899999999999999998644444332 334445999999999999999999999
Q ss_pred EEcCCCcEEEEEeeecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCCCCccceeeeccCCcc
Q 003822 664 LLAVDGRVHLNFGITATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPF 743 (793)
Q Consensus 664 wDl~tg~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~ 743 (793)
|-+..+...........+ ..++.+.|++|++ |+.+-+.|-.+ -.|....-+.+. ..+.- ....+...+..+.+
T Consensus 474 y~Vs~~g~~y~r~~k~~g-s~ithLDwS~Ds~-~~~~~S~d~ei-LyW~~~~~~~~t--s~kDv--kW~t~~c~lGF~v~ 546 (626)
T KOG2106|consen 474 YRVSANGRKYSRVGKCSG-SPITHLDWSSDSQ-FLVSNSGDYEI-LYWKPSECKQIT--SVKDV--KWATYTCTLGFEVF 546 (626)
T ss_pred EEECCCCcEEEEeeeecC-ceeEEeeecCCCc-eEEeccCceEE-EEEccccCcccc--eecce--eeeeeEEEEEEEEe
Confidence 998765443333333334 7899999999999 99999999999 999444333333 22111 11122233333333
Q ss_pred ccCCc-cEEEEEEcCCCCceeeEeeEEEeCCCcEEEEcCCCCC--CCCCCCCC
Q 003822 744 RDFNM-SILAAYTRPSSKSEIVKVNLLASTDHCDKECSHGQHS--RPSRSMGG 793 (793)
Q Consensus 744 ~~h~~-~V~sva~~P~~~~~iv~~~ltaS~Dg~VkvW~~~~~~--~~~~s~gg 793 (793)
.+-++ .|.+++.+. ....++ +|-+.|+|+++.++-.+ .|++..||
T Consensus 547 g~s~~t~i~a~~rs~-~~~~lA----~gdd~g~v~lf~yPc~s~rA~~he~~g 594 (626)
T KOG2106|consen 547 GGSDGTDINAVARSH-CEKLLA----SGDDFGKVHLFSYPCSSPRAPSHEYGG 594 (626)
T ss_pred cccCCchHHHhhhhh-hhhhhh----ccccCceEEEEccccCCCcccceeecc
Confidence 33233 344444444 233333 55666999999998765 55555554
No 114
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=1.9e-19 Score=184.26 Aligned_cols=236 Identities=15% Similarity=0.217 Sum_probs=184.1
Q ss_pred ceEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCC-CCEEEEEEcCCcEEEEEcCCCCC
Q 003822 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKY-PSKLIAGSDNGSLKLYDIRHMPP 533 (793)
Q Consensus 455 ~V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~-g~~Lasgs~DgtV~vWDl~~~~~ 533 (793)
.++++|.+. .++|+|+.|-+|+|||+.+...+..+. .|.+.|+++.|.++- .+.|++|+.||.|.+|+...-..
T Consensus 45 sitavAVs~---~~~aSGssDetI~IYDm~k~~qlg~ll--~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~ 119 (362)
T KOG0294|consen 45 SITALAVSG---PYVASGSSDETIHIYDMRKRKQLGILL--SHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWEL 119 (362)
T ss_pred ceeEEEecc---eeEeccCCCCcEEEEeccchhhhccee--ccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEE
Confidence 489999866 899999999999999999888887776 789999999997443 24899999999999999987422
Q ss_pred cccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEe
Q 003822 534 SIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSS 613 (793)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs 613 (793)
+.. .-.|..+|+.+++||.+..-++.|.|+.++.||+-.|+.-...+-.+ ..+.|.|+|.| .+|+.++
T Consensus 120 -~~s--------lK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~--~at~v~w~~~G-d~F~v~~ 187 (362)
T KOG0294|consen 120 -LKS--------LKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKN--KATLVSWSPQG-DHFVVSG 187 (362)
T ss_pred -eee--------ecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCC--cceeeEEcCCC-CEEEEEe
Confidence 111 12345679999999999999999999999999999998777766323 34459999999 6777777
Q ss_pred CCCeEEEEECCCCCccceEEccCCCCeEEEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEe--
Q 003822 614 FDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYY-- 691 (793)
Q Consensus 614 ~Dg~IrIWDlrt~~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afs-- 691 (793)
.+ .|-+|-+.+........ ....+.++.|- ++.+|++|..|+.|.+||..++.+...+. .|...|-.+.+.
T Consensus 188 ~~-~i~i~q~d~A~v~~~i~--~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~---AH~~RVK~i~~~~~ 260 (362)
T KOG0294|consen 188 RN-KIDIYQLDNASVFREIE--NPKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFL---AHENRVKDIASYTN 260 (362)
T ss_pred cc-EEEEEecccHhHhhhhh--ccccceeeeec-CCceEEEecCCceEEEeccCCCccceeee---cchhheeeeEEEec
Confidence 66 58899988753322222 22334455554 57889999999999999999888877775 455666666632
Q ss_pred eCCCeEEEEEeCCCcEEEEEEcCCC
Q 003822 692 LNGRDYIVSGSCDEHVVRICCAQTG 716 (793)
Q Consensus 692 pdg~~~L~Sgs~Dg~II~IWDv~tg 716 (793)
|++. ||+|+|.||.| +|||+...
T Consensus 261 ~~~~-~lvTaSSDG~I-~vWd~~~~ 283 (362)
T KOG0294|consen 261 PEHE-YLVTASSDGFI-KVWDIDME 283 (362)
T ss_pred CCce-EEEEeccCceE-EEEEcccc
Confidence 3444 99999999999 99999877
No 115
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.84 E-value=4.1e-19 Score=181.69 Aligned_cols=251 Identities=18% Similarity=0.209 Sum_probs=189.5
Q ss_pred CCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEE
Q 003822 498 MNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALY 577 (793)
Q Consensus 498 ~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IW 577 (793)
...|.+|.|+ +..+.|+++++||++++||+..... ...+.+..++.+++|. +...+++|+-||.|+.+
T Consensus 13 ~d~IS~v~f~-~~~~~LLvssWDgslrlYdv~~~~l----------~~~~~~~~plL~c~F~-d~~~~~~G~~dg~vr~~ 80 (323)
T KOG1036|consen 13 EDGISSVKFS-PSSSDLLVSSWDGSLRLYDVPANSL----------KLKFKHGAPLLDCAFA-DESTIVTGGLDGQVRRY 80 (323)
T ss_pred hhceeeEEEc-CcCCcEEEEeccCcEEEEeccchhh----------hhheecCCceeeeecc-CCceEEEeccCceEEEE
Confidence 5789999998 6777888888999999999988533 3456777899999994 57889999999999999
Q ss_pred ECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEECCCCCccceEEccCCCCeEEEEEecCCCEEEEEeC
Q 003822 578 DINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLVSAV 657 (793)
Q Consensus 578 Dl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs~ 657 (793)
|+.++.....-. |..+|.+|.+.+.. ..+++|+.|++|++||.|.. ...........+. +.+-.|..|++|+.
T Consensus 81 Dln~~~~~~igt--h~~~i~ci~~~~~~-~~vIsgsWD~~ik~wD~R~~--~~~~~~d~~kkVy--~~~v~g~~LvVg~~ 153 (323)
T KOG1036|consen 81 DLNTGNEDQIGT--HDEGIRCIEYSYEV-GCVISGSWDKTIKFWDPRNK--VVVGTFDQGKKVY--CMDVSGNRLVVGTS 153 (323)
T ss_pred EecCCcceeecc--CCCceEEEEeeccC-CeEEEcccCccEEEEecccc--ccccccccCceEE--EEeccCCEEEEeec
Confidence 999988766554 99999999999877 78999999999999999974 3334443333443 44456899999999
Q ss_pred CCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCC--cEEEeeeecCCCCCcccee
Q 003822 658 DNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTG--RRLRDISLEGKGSGTSMFV 735 (793)
Q Consensus 658 Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg--~~l~~~~L~gh~~~~s~~v 735 (793)
|..+.+||+++.....+.. ...-.-.+.++++.|++. -.+++|-||+| .+=.+... ..-+++.++.|.......
T Consensus 154 ~r~v~iyDLRn~~~~~q~r-eS~lkyqtR~v~~~pn~e-Gy~~sSieGRV-avE~~d~s~~~~skkyaFkCHr~~~~~~- 229 (323)
T KOG1036|consen 154 DRKVLIYDLRNLDEPFQRR-ESSLKYQTRCVALVPNGE-GYVVSSIEGRV-AVEYFDDSEEAQSKKYAFKCHRLSEKDT- 229 (323)
T ss_pred CceEEEEEcccccchhhhc-cccceeEEEEEEEecCCC-ceEEEeecceE-EEEccCCchHHhhhceeEEeeecccCCc-
Confidence 9999999999876533221 122344677888899777 67788899998 66655554 122345777776211110
Q ss_pred eeccCCccccCCccEEEEEEcCCCCceeeEeeEEEeCCCcEEEEcCCCCC
Q 003822 736 QSLRGDPFRDFNMSILAAYTRPSSKSEIVKVNLLASTDHCDKECSHGQHS 785 (793)
Q Consensus 736 ~sl~g~~~~~h~~~V~sva~~P~~~~~iv~~~ltaS~Dg~VkvW~~~~~~ 785 (793)
.--.+|++++|||. ...++ +|++||.|.+|+...+.
T Consensus 230 ---------~~~yPVNai~Fhp~-~~tfa----TgGsDG~V~~Wd~~~rK 265 (323)
T KOG1036|consen 230 ---------EIIYPVNAIAFHPI-HGTFA----TGGSDGIVNIWDLFNRK 265 (323)
T ss_pred ---------eEEEEeceeEeccc-cceEE----ecCCCceEEEccCcchh
Confidence 01127999999995 56666 99999999999987764
No 116
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.84 E-value=5e-19 Score=177.56 Aligned_cols=226 Identities=12% Similarity=0.168 Sum_probs=186.0
Q ss_pred ccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCc
Q 003822 494 SFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKN 573 (793)
Q Consensus 494 ~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~ 573 (793)
+.||..+++.+.|+ .+|++|++++.|.++.+|-..+++..- -.-.|.+.|+++++......+++++.|.+
T Consensus 6 l~GHERplTqiKyN-~eGDLlFscaKD~~~~vw~s~nGerlG---------ty~GHtGavW~~Did~~s~~liTGSAD~t 75 (327)
T KOG0643|consen 6 LQGHERPLTQIKYN-REGDLLFSCAKDSTPTVWYSLNGERLG---------TYDGHTGAVWCCDIDWDSKHLITGSADQT 75 (327)
T ss_pred cccCccccceEEec-CCCcEEEEecCCCCceEEEecCCceee---------eecCCCceEEEEEecCCcceeeeccccce
Confidence 45999999999997 899999999999999999887766421 12245688999999989999999999999
Q ss_pred EEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeC-----CCeEEEEECCCCC-----ccceEEccCCC-CeEE
Q 003822 574 IALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSF-----DQDVKLWDLRQKP-----IQPCYTASSSK-GNVM 642 (793)
Q Consensus 574 I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~-----Dg~IrIWDlrt~~-----~~~~~~l~~~~-~~vs 642 (793)
+++||+.+|+.+.+++ ...+|..+.|+++| ++++.+.. .+.|.++|++... ..|...++.+. .++.
T Consensus 76 ~kLWDv~tGk~la~~k--~~~~Vk~~~F~~~g-n~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~ 152 (327)
T KOG0643|consen 76 AKLWDVETGKQLATWK--TNSPVKRVDFSFGG-NLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITS 152 (327)
T ss_pred eEEEEcCCCcEEEEee--cCCeeEEEeeccCC-cEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceee
Confidence 9999999999999998 77899999999999 66665554 3569999998432 23455555444 4456
Q ss_pred EEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEEee
Q 003822 643 VCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRLRDI 722 (793)
Q Consensus 643 v~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~ 722 (793)
+.|+|-+++|++|..||.|.+||+++|+....- ...|...+..+.+++|.. ++++||.|.+. ++||+.+-+.++
T Consensus 153 a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s--~~~h~~~Ind~q~s~d~T-~FiT~s~Dtta-kl~D~~tl~v~K-- 226 (327)
T KOG0643|consen 153 ALWGPLGETIIAGHEDGSISIYDARTGKELVDS--DEEHSSKINDLQFSRDRT-YFITGSKDTTA-KLVDVRTLEVLK-- 226 (327)
T ss_pred eeecccCCEEEEecCCCcEEEEEcccCceeeec--hhhhccccccccccCCcc-eEEecccCccc-eeeeccceeeEE--
Confidence 999999999999999999999999998654332 234666899999999999 99999999999 999999999998
Q ss_pred eecCCCCCccceeeeccCCccccCCccEEEEEEcCC
Q 003822 723 SLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPS 758 (793)
Q Consensus 723 ~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~ 758 (793)
++.... +|++++++|.
T Consensus 227 ty~te~--------------------PvN~aaisP~ 242 (327)
T KOG0643|consen 227 TYTTER--------------------PVNTAAISPL 242 (327)
T ss_pred Eeeecc--------------------cccceecccc
Confidence 444332 6888899985
No 117
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=7.8e-19 Score=179.64 Aligned_cols=292 Identities=12% Similarity=0.125 Sum_probs=201.9
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeE--EEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCC
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENI--VSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPP 533 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~--i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~ 533 (793)
|++++|+. +|+.||+++.|++|++|++..-.. .+.++..-.-+..+.+.|.|.....+++.-...++++|.+...+.
T Consensus 89 vt~~~FsS-dGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~d 167 (420)
T KOG2096|consen 89 VTDVAFSS-DGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTD 167 (420)
T ss_pred eeeeEEcC-CCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEEEeeeccc
Confidence 99999999 999999999999999999875321 111111011124677889844444566666677899998865432
Q ss_pred -cccccccCCce--eEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEE
Q 003822 534 -SIRGMHYGAGT--VTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFA 610 (793)
Q Consensus 534 -~~~~~~~~~~~--~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~La 610 (793)
.......+... +.-.|...+..+-+...+.++++++.|..|.+|+++ |+.+..+. ..+..-+..+.+|+| .+++
T Consensus 168 G~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~id-tnq~~n~~aavSP~G-RFia 244 (420)
T KOG2096|consen 168 GSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSID-TNQSSNYDAAVSPDG-RFIA 244 (420)
T ss_pred CCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeec-cccccccceeeCCCC-cEEE
Confidence 00000001111 112334456667775566677777889999999999 99999887 466667788999999 8999
Q ss_pred EEeCCCeEEEEECCC---C---CccceEEccCCCCeE-EEEEecCCCEEEEEeCCCeEEEEEcCC-------CcEEEEEe
Q 003822 611 TSSFDQDVKLWDLRQ---K---PIQPCYTASSSKGNV-MVCFSPDDHYLLVSAVDNEVRQLLAVD-------GRVHLNFG 676 (793)
Q Consensus 611 Tgs~Dg~IrIWDlrt---~---~~~~~~~l~~~~~~v-sv~fSpdg~~Lasgs~Dg~I~IwDl~t-------g~~~~~l~ 676 (793)
+++..-.|++|.+-- + +...++.+.+|...+ .++|+|+.+.+++.+.||++++||+.- .+.+.+..
T Consensus 245 ~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~ 324 (420)
T KOG2096|consen 245 VSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGS 324 (420)
T ss_pred EecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCC
Confidence 999999999998632 2 345567888998777 499999999999999999999999742 12222221
Q ss_pred e-ecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCCCCccceeeeccCCccccCCccEEEEEE
Q 003822 677 I-TATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYT 755 (793)
Q Consensus 677 ~-~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~ 755 (793)
. ..........++.+|.|+ .| +.+....+ +++..++|+... .++ +.|...|.+++|
T Consensus 325 ~pl~aag~~p~RL~lsP~g~-~l-A~s~gs~l-~~~~se~g~~~~--~~e------------------~~h~~~Is~is~ 381 (420)
T KOG2096|consen 325 APLHAAGSEPVRLELSPSGD-SL-AVSFGSDL-KVFASEDGKDYP--ELE------------------DIHSTTISSISY 381 (420)
T ss_pred cchhhcCCCceEEEeCCCCc-EE-EeecCCce-EEEEcccCccch--hHH------------------HhhcCceeeEEe
Confidence 1 112334566899999998 44 34444567 999999988776 332 245568999999
Q ss_pred cCCCCceeeEeeEEEeCCCcEEEEc
Q 003822 756 RPSSKSEIVKVNLLASTDHCDKECS 780 (793)
Q Consensus 756 ~P~~~~~iv~~~ltaS~Dg~VkvW~ 780 (793)
+|+++. +...+|..+++..
T Consensus 382 ~~~g~~------~atcGdr~vrv~~ 400 (420)
T KOG2096|consen 382 SSDGKY------IATCGDRYVRVIR 400 (420)
T ss_pred cCCCcE------Eeeecceeeeeec
Confidence 998421 2335678888876
No 118
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.84 E-value=3.5e-18 Score=193.13 Aligned_cols=307 Identities=15% Similarity=0.213 Sum_probs=236.2
Q ss_pred eEEEEEeC-CCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCc
Q 003822 456 PRQFEYHP-SISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS 534 (793)
Q Consensus 456 V~~vafsP-~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~ 534 (793)
|+++ +|| +.-+.++.|+.+|.+.+||+.+++.+.+++ ++...|+++.-+ |-=+.++.|..+|+|.+++++.++.
T Consensus 162 Ital-~HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~--~~~s~IT~ieqs-PaLDVVaiG~~~G~ViifNlK~dki- 236 (910)
T KOG1539|consen 162 ITAL-LHPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQ--EFFSRITAIEQS-PALDVVAIGLENGTVIIFNLKFDKI- 236 (910)
T ss_pred eeeE-ecchhheeeEEEeecCCcEEEEEeccCcEEEEec--ccccceeEeccC-CcceEEEEeccCceEEEEEcccCcE-
Confidence 5555 344 345678999999999999999999999988 777999999865 5567899999999999999998765
Q ss_pred ccccccCCceeEecCC-CCeEEEEEccCCCEEEEEEC-CCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEE
Q 003822 535 IRGMHYGAGTVTFDEF-DQLTSVHVNSMDELFLASGY-SKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATS 612 (793)
Q Consensus 535 ~~~~~~~~~~~~~~~~-~~V~sv~~s~~~~~lla~g~-Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTg 612 (793)
...|.+. ++|++++|.-+|..++++|. .|.+.+||++..+.+..+...|.+.|....|.|.. ..++|+
T Consensus 237 ---------l~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~e-pVl~ta 306 (910)
T KOG1539|consen 237 ---------LMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGE-PVLVTA 306 (910)
T ss_pred ---------EEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCC-ceEeec
Confidence 5567775 89999999888888877775 69999999999888888887898999999998877 588888
Q ss_pred eCCCeEEEEECCCCCc----------------------------------------------------------------
Q 003822 613 SFDQDVKLWDLRQKPI---------------------------------------------------------------- 628 (793)
Q Consensus 613 s~Dg~IrIWDlrt~~~---------------------------------------------------------------- 628 (793)
+.|+.+++|=..++..
T Consensus 307 ~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~ 386 (910)
T KOG1539|consen 307 GADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVN 386 (910)
T ss_pred cCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhccccccccccccc
Confidence 8888877763321100
Q ss_pred ---------cceEE--------------------------------------ccCC------CCeEEEEEecCCCEEEEE
Q 003822 629 ---------QPCYT--------------------------------------ASSS------KGNVMVCFSPDDHYLLVS 655 (793)
Q Consensus 629 ---------~~~~~--------------------------------------l~~~------~~~vsv~fSpdg~~Lasg 655 (793)
.++.. +... ....+++.++.|++.+.|
T Consensus 387 ~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG 466 (910)
T KOG1539|consen 387 VFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIG 466 (910)
T ss_pred ccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEe
Confidence 00000 0000 112358888999999999
Q ss_pred eCCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCCCCccce-
Q 003822 656 AVDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKGSGTSMF- 734 (793)
Q Consensus 656 s~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~- 734 (793)
+..|.|-+|++.+|....++...+.+...+..++...-++ .+++++.+|.+ .+||...+..+.++.+...- ....+
T Consensus 467 ~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~-~~vsa~~~Gil-kfw~f~~k~l~~~l~l~~~~-~~iv~h 543 (910)
T KOG1539|consen 467 YSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNR-LLVSAGADGIL-KFWDFKKKVLKKSLRLGSSI-TGIVYH 543 (910)
T ss_pred ccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCc-eEEEccCcceE-EEEecCCcceeeeeccCCCc-ceeeee
Confidence 9999999999999998888865667888899999988888 99999999999 99999999877733332211 11001
Q ss_pred --------------eeec------cCCccccCCccEEEEEEcCCCCceeeEeeEEEeCCCcEEEEcCCCCC
Q 003822 735 --------------VQSL------RGDPFRDFNMSILAAYTRPSSKSEIVKVNLLASTDHCDKECSHGQHS 785 (793)
Q Consensus 735 --------------v~sl------~g~~~~~h~~~V~sva~~P~~~~~iv~~~ltaS~Dg~VkvW~~~~~~ 785 (793)
+..+ ---.|.+|...|+++.|+|+++|.+ +|+.|++||+|+++...
T Consensus 544 r~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWli-----sasmD~tIr~wDlpt~~ 609 (910)
T KOG1539|consen 544 RVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLI-----SASMDSTIRTWDLPTGT 609 (910)
T ss_pred ehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEE-----EeecCCcEEEEeccCcc
Confidence 0000 1124568999999999999877644 59999999999987653
No 119
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.84 E-value=2.4e-19 Score=199.16 Aligned_cols=227 Identities=20% Similarity=0.278 Sum_probs=189.7
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcc
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSI 535 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~ 535 (793)
+.+++|-+.++..+++|+.|++|.+|...+..+...+. +|...|.++.-. .++ .+++||.|.++++|........
T Consensus 61 ~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~Lk--gH~snVC~ls~~-~~~-~~iSgSWD~TakvW~~~~l~~~- 135 (745)
T KOG0301|consen 61 ANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLK--GHKSNVCSLSIG-EDG-TLISGSWDSTAKVWRIGELVYS- 135 (745)
T ss_pred eccceeccccCcceEeecccceEEEEecCCCCchhhhh--ccccceeeeecC-CcC-ceEecccccceEEecchhhhcc-
Confidence 44488887577789999999999999999999988887 999999999853 344 4999999999999988763321
Q ss_pred cccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeCC
Q 003822 536 RGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFD 615 (793)
Q Consensus 536 ~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~D 615 (793)
...|...|+++..-|.+ .+++|+.|.+|++|.- ++.+++|. ||.+.|+.+++-+++ .|++++.|
T Consensus 136 ----------l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~-gHtD~VRgL~vl~~~--~flScsND 199 (745)
T KOG0301|consen 136 ----------LQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFS-GHTDCVRGLAVLDDS--HFLSCSND 199 (745)
T ss_pred ----------cCCcchheeeeeecCCC-cEEeccCcceeeeccC--Cchhhhhc-cchhheeeeEEecCC--CeEeecCC
Confidence 33566789999887766 9999999999999975 78899999 799999999999886 59999999
Q ss_pred CeEEEEECCCCCccceEEccCCCCeE-EEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCC
Q 003822 616 QDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNG 694 (793)
Q Consensus 616 g~IrIWDlrt~~~~~~~~l~~~~~~v-sv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg 694 (793)
|.|+.|++.. ..+....+|...+ ++...+++..+++++.|++++||+.. .+.+.+.. ....++++.+-++|
T Consensus 200 g~Ir~w~~~g---e~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~l---PttsiWsa~~L~Ng 271 (745)
T KOG0301|consen 200 GSIRLWDLDG---EVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITL---PTTSIWSAKVLLNG 271 (745)
T ss_pred ceEEEEeccC---ceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEec---CccceEEEEEeeCC
Confidence 9999999944 3566777777665 68888889999999999999999866 66666652 34578999999999
Q ss_pred CeEEEEEeCCCcEEEEEEcC
Q 003822 695 RDYIVSGSCDEHVVRICCAQ 714 (793)
Q Consensus 695 ~~~L~Sgs~Dg~II~IWDv~ 714 (793)
. |++|++||.| |||...
T Consensus 272 D--Ivvg~SDG~V-rVfT~~ 288 (745)
T KOG0301|consen 272 D--IVVGGSDGRV-RVFTVD 288 (745)
T ss_pred C--EEEeccCceE-EEEEec
Confidence 7 9999999999 999876
No 120
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.83 E-value=8.1e-19 Score=191.80 Aligned_cols=311 Identities=12% Similarity=0.122 Sum_probs=216.2
Q ss_pred CceeeeeccCCCCCCCCcccceEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEE
Q 003822 435 PCLHTLTVSGNHMGDENRSFRPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKL 514 (793)
Q Consensus 435 p~~~~l~~~g~~~~~~~~~~~V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~L 514 (793)
|....+-..||... |+++..+| .|.+||+|+.||+|+||.+.+|.++..+.+. +.|.+|+|+|....-+
T Consensus 389 Pt~~~lvyrGHtg~-------Vr~iSvdp-~G~wlasGsdDGtvriWEi~TgRcvr~~~~d---~~I~~vaw~P~~~~~v 457 (733)
T KOG0650|consen 389 PTRCALVYRGHTGL-------VRSISVDP-SGEWLASGSDDGTVRIWEIATGRCVRTVQFD---SEIRSVAWNPLSDLCV 457 (733)
T ss_pred cceeeeeEeccCCe-------EEEEEecC-CcceeeecCCCCcEEEEEeecceEEEEEeec---ceeEEEEecCCCCcee
Confidence 44444545566653 89999999 9999999999999999999999999998753 5799999985444444
Q ss_pred EEEEcCCcEEEEEcCCCCCccc--------cc----c---------------cC-CceeEecCCCCeEEEEEccCCCEEE
Q 003822 515 IAGSDNGSLKLYDIRHMPPSIR--------GM----H---------------YG-AGTVTFDEFDQLTSVHVNSMDELFL 566 (793)
Q Consensus 515 asgs~DgtV~vWDl~~~~~~~~--------~~----~---------------~~-~~~~~~~~~~~V~sv~~s~~~~~ll 566 (793)
++++.+..+-+-+..-+..... .. . .. .-.+...|...|..+.||..|.+++
T Consensus 458 LAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYla 537 (733)
T KOG0650|consen 458 LAVAVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLA 537 (733)
T ss_pred EEEEecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEE
Confidence 4444444566665443311000 00 0 00 0134567788999999999999999
Q ss_pred EEEC---CCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEECCCCCccceEEccCCCCeEE-
Q 003822 567 ASGY---SKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVM- 642 (793)
Q Consensus 567 a~g~---Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~~~~vs- 642 (793)
++.. ...|.|+++...+...-|. -..+.|.++.|+|..+ +|++++. ..|+|||+... ..+..+......++
T Consensus 538 tV~~~~~~~~VliHQLSK~~sQ~PF~-kskG~vq~v~FHPs~p-~lfVaTq-~~vRiYdL~kq--elvKkL~tg~kwiS~ 612 (733)
T KOG0650|consen 538 TVMPDSGNKSVLIHQLSKRKSQSPFR-KSKGLVQRVKFHPSKP-YLFVATQ-RSVRIYDLSKQ--ELVKKLLTGSKWISS 612 (733)
T ss_pred EeccCCCcceEEEEecccccccCchh-hcCCceeEEEecCCCc-eEEEEec-cceEEEehhHH--HHHHHHhcCCeeeee
Confidence 9864 4679999999877776675 3667899999999985 5555553 57999999875 33333333444554
Q ss_pred EEEecCCCEEEEEeCCCeEEEEEcCCC-cEEEEEeeecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcC-CCcEEE
Q 003822 643 VCFSPDDHYLLVSAVDNEVRQLLAVDG-RVHLNFGITATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQ-TGRRLR 720 (793)
Q Consensus 643 v~fSpdg~~Lasgs~Dg~I~IwDl~tg-~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~-tg~~l~ 720 (793)
++.+|.|..|++|+.|+.+..||+.-+ +..+++. .|...+..++|++.-. ++++|+.||++ .|+.-. ...+++
T Consensus 613 msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr---~H~~avr~Va~H~ryP-Lfas~sdDgtv-~Vfhg~VY~Dl~q 687 (733)
T KOG0650|consen 613 MSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLR---LHEKAVRSVAFHKRYP-LFASGSDDGTV-IVFHGMVYNDLLQ 687 (733)
T ss_pred eeecCCCCeEEEecCCCeeEEEEcccCcchhHHhh---hhhhhhhhhhhccccc-eeeeecCCCcE-EEEeeeeehhhhc
Confidence 999999999999999999999998765 3334443 4667788999999887 99999999999 666421 111111
Q ss_pred eeeecCCCCCccceeeeccCCccccCCccEEEEEEcCCCCceeeEeeEEEeCCCcEEEEc
Q 003822 721 DISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKSEIVKVNLLASTDHCDKECS 780 (793)
Q Consensus 721 ~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~~~~iv~~~ltaS~Dg~VkvW~ 780 (793)
+.-...+..|+|+... .+..|+.+.|||.-+| ++ +|++||+||+|.
T Consensus 688 --------npliVPlK~L~gH~~~-~~~gVLd~~wHP~qpW-Lf----sAGAd~tirlfT 733 (733)
T KOG0650|consen 688 --------NPLIVPLKRLRGHEKT-NDLGVLDTIWHPRQPW-LF----SAGADGTIRLFT 733 (733)
T ss_pred --------CCceEeeeeccCceee-cccceEeecccCCCce-EE----ecCCCceEEeeC
Confidence 0001122222222111 1235999999997554 33 699999999995
No 121
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=4.9e-18 Score=188.59 Aligned_cols=280 Identities=13% Similarity=0.140 Sum_probs=206.2
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEE-EEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCc
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIV-SYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS 534 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i-~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~ 534 (793)
|+++||+. ..+.||.+-.+|.|.||++..+-.. ..+.. +-...|.+++|. ++..|++.+.+|+|.-||+.+.++.
T Consensus 28 I~slA~s~-kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g-~~drsIE~L~W~--e~~RLFS~g~sg~i~EwDl~~lk~~ 103 (691)
T KOG2048|consen 28 IVSLAYSH-KSNQLAVSRTDGNIEIWNLSNNWFLEPVIHG-PEDRSIESLAWA--EGGRLFSSGLSGSITEWDLHTLKQK 103 (691)
T ss_pred eEEEEEec-cCCceeeeccCCcEEEEccCCCceeeEEEec-CCCCceeeEEEc--cCCeEEeecCCceEEEEecccCcee
Confidence 89999999 7778999999999999999875433 33433 445789999997 6778999999999999999987652
Q ss_pred ccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcc-cCCCCeEEEEEcCCCCcEEEEEe
Q 003822 535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFAD-MHKEHINVVKFSNHSPSIFATSS 613 (793)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~-gh~~~V~sv~fspdg~~~LaTgs 613 (793)
.. .-...+.|++++.+|.+..++.++.||.++.++...++......- ..++.|.+++|+|++ ..+++|+
T Consensus 104 ~~---------~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~-~~i~~Gs 173 (691)
T KOG2048|consen 104 YN---------IDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTG-TKIAGGS 173 (691)
T ss_pred EE---------ecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCc-cEEEecc
Confidence 11 112236799999999999999999999888888888776554321 256899999999999 7899999
Q ss_pred CCCeEEEEECCCCCccceEEcc-----CCCCeE--EEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcE
Q 003822 614 FDQDVKLWDLRQKPIQPCYTAS-----SSKGNV--MVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNY 686 (793)
Q Consensus 614 ~Dg~IrIWDlrt~~~~~~~~l~-----~~~~~v--sv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~ 686 (793)
.||.|++||..++....+.+.+ .....+ ++.|-.+ ..|++|...|+|.+||...|.+++.+. .+...+.
T Consensus 174 ~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~gTLiqS~~---~h~adVl 249 (691)
T KOG2048|consen 174 IDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFGTLIQSHS---CHDADVL 249 (691)
T ss_pred cCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccCcchhhhhh---hhhccee
Confidence 9999999999987544422221 111221 4555544 558999999999999999999988775 4667789
Q ss_pred EEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCCCCccceeeeccCCccccCCccEEEEEEcCCCCceeeEe
Q 003822 687 TRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKSEIVKV 766 (793)
Q Consensus 687 s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~~~~iv~~ 766 (793)
+++..+++. +++++|.|+.+ .-+...++..- |+... +...|...|.+++.-+. .
T Consensus 250 ~Lav~~~~d-~vfsaGvd~~i-i~~~~~~~~~~--------------wv~~~---~r~~h~hdvrs~av~~~-------~ 303 (691)
T KOG2048|consen 250 ALAVADNED-RVFSAGVDPKI-IQYSLTTNKSE--------------WVINS---RRDLHAHDVRSMAVIEN-------A 303 (691)
T ss_pred EEEEcCCCC-eEEEccCCCce-EEEEecCCccc--------------eeeec---cccCCcccceeeeeecc-------e
Confidence 999999887 89999999999 44444433221 33322 22344446677776664 3
Q ss_pred eEEEeCCCcEEEE
Q 003822 767 NLLASTDHCDKEC 779 (793)
Q Consensus 767 ~ltaS~Dg~VkvW 779 (793)
.+.|+.|+++-+=
T Consensus 304 l~sgG~d~~l~i~ 316 (691)
T KOG2048|consen 304 LISGGRDFTLAIC 316 (691)
T ss_pred EEecceeeEEEEc
Confidence 3466666665553
No 122
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.83 E-value=1.3e-20 Score=209.72 Aligned_cols=246 Identities=19% Similarity=0.240 Sum_probs=200.6
Q ss_pred CCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcccccccCCcee
Q 003822 466 SCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTV 545 (793)
Q Consensus 466 ~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~~~~~~~~~~~ 545 (793)
...++.+..+-.++||+.... ..|...|.++.. ...+..+++|+.|..+-+|.+....... .
T Consensus 4 ~~~~m~~~~~t~Lr~~~~~~~--------~~hsaav~~lk~-~~s~r~~~~Gg~~~k~~L~~i~kp~~i~---------S 65 (825)
T KOG0267|consen 4 MEFLMKTKRATKLRVWDTREF--------VAHSAAVGCLKI-RKSSRSLVTGGEDEKVNLWAIGKPNAIT---------S 65 (825)
T ss_pred ccccceeeeeeccccccchhh--------hhhhhhhceeee-eccceeeccCCCceeeccccccCCchhh---------e
Confidence 344555555666788886532 156677777775 3677899999999999999988754321 1
Q ss_pred EecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEECCC
Q 003822 546 TFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQ 625 (793)
Q Consensus 546 ~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~Dg~IrIWDlrt 625 (793)
...|..+|.++.|+.....+++|+.+|+|++||+..++.++++. ||...+.+|.|+|.+ .++++|+.|+.+++||++.
T Consensus 66 ~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLt-gh~~~~~sv~f~P~~-~~~a~gStdtd~~iwD~Rk 143 (825)
T KOG0267|consen 66 LTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLT-GHLLNITSVDFHPYG-EFFASGSTDTDLKIWDIRK 143 (825)
T ss_pred eeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhh-ccccCcceeeeccce-EEeccccccccceehhhhc
Confidence 35677899999998888888888899999999999999999999 799999999999999 8999999999999999997
Q ss_pred CCccceEEccCCCCeEE-EEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCCCeEEEEEeCC
Q 003822 626 KPIQPCYTASSSKGNVM-VCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNGRDYIVSGSCD 704 (793)
Q Consensus 626 ~~~~~~~~l~~~~~~vs-v~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~D 704 (793)
.. +.+...+|..++. +.|+|+|+++++|+.|..++|||+..|+....|. .+...+..+.|+|..- ++++||.|
T Consensus 144 ~G--c~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~---~~e~~v~sle~hp~e~-Lla~Gs~d 217 (825)
T KOG0267|consen 144 KG--CSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFK---SHEGKVQSLEFHPLEV-LLAPGSSD 217 (825)
T ss_pred cC--ceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccccccccc---cccccccccccCchhh-hhccCCCC
Confidence 64 4556666777775 8999999999999999999999999999988886 4666788888999887 89999999
Q ss_pred CcEEEEEEcCCCcEEEeeeecCCCCCccceeeeccCCccccCCccEEEEEEcCCC
Q 003822 705 EHVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSS 759 (793)
Q Consensus 705 g~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~ 759 (793)
+++ ++||+++-+.+. ..+. ....|.+.+|+|++
T Consensus 218 ~tv-~f~dletfe~I~--s~~~-------------------~~~~v~~~~fn~~~ 250 (825)
T KOG0267|consen 218 RTV-RFWDLETFEVIS--SGKP-------------------ETDGVRSLAFNPDG 250 (825)
T ss_pred cee-eeeccceeEEee--ccCC-------------------ccCCceeeeecCCc
Confidence 999 999999887776 2211 12468888898874
No 123
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.82 E-value=3.6e-18 Score=193.05 Aligned_cols=290 Identities=16% Similarity=0.229 Sum_probs=225.7
Q ss_pred ceEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCc
Q 003822 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS 534 (793)
Q Consensus 455 ~V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~ 534 (793)
+|+.++|.-+...++|+|+..|.+.+||++..+.+..+.- .|.+.|....|. +....+++++.|..+++|=.+++...
T Consensus 246 ~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~n-ah~~sv~~~~fl-~~epVl~ta~~DnSlk~~vfD~~dg~ 323 (910)
T KOG1539|consen 246 RVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRN-AHYGSVTGATFL-PGEPVLVTAGADNSLKVWVFDSGDGV 323 (910)
T ss_pred ceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeec-cccCCcccceec-CCCceEeeccCCCceeEEEeeCCCCc
Confidence 3999999986667888999999999999998887766653 688889998887 56678889999988888855522110
Q ss_pred ---ccc-------------------------------------------------------c--c---------------
Q 003822 535 ---IRG-------------------------------------------------------M--H--------------- 539 (793)
Q Consensus 535 ---~~~-------------------------------------------------------~--~--------------- 539 (793)
++. . .
T Consensus 324 pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~ 403 (910)
T KOG1539|consen 324 PRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAF 403 (910)
T ss_pred chheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeec
Confidence 000 0 0
Q ss_pred ----------------c------------CCceeEecCC------CCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEE
Q 003822 540 ----------------Y------------GAGTVTFDEF------DQLTSVHVNSMDELFLASGYSKNIALYDINSGRRL 585 (793)
Q Consensus 540 ----------------~------------~~~~~~~~~~------~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l 585 (793)
+ ..+...+.+. ..+++++.++-|+..+.|...|+|-+|++.+|-..
T Consensus 404 ~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r 483 (910)
T KOG1539|consen 404 ENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHR 483 (910)
T ss_pred ccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeee
Confidence 0 0001111122 45788888777777777778999999999999998
Q ss_pred EEEc--ccCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEECCCCCccceEEccCCCCeEEEEEecCCCEEEEEeCCCeEEE
Q 003822 586 QVFA--DMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLVSAVDNEVRQ 663 (793)
Q Consensus 586 ~~~~--~gh~~~V~sv~fspdg~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs~Dg~I~I 663 (793)
..+- ..|.++|++++...-+ +.+++++.+|.+++||..+.. ....+.-...+..+.++.....++++..|-.|++
T Consensus 484 ~sf~~~~ah~~~V~gla~D~~n-~~~vsa~~~Gilkfw~f~~k~--l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~v 560 (910)
T KOG1539|consen 484 KSFGDSPAHKGEVTGLAVDGTN-RLLVSAGADGILKFWDFKKKV--LKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRV 560 (910)
T ss_pred cccccCccccCceeEEEecCCC-ceEEEccCcceEEEEecCCcc--eeeeeccCCCcceeeeeehhhhhhhhcCceeEEE
Confidence 8882 3699999999998877 899999999999999998874 3344444445566788888888999999999999
Q ss_pred EEcCCCcEEEEEeeecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCCCCccceeeeccCCcc
Q 003822 664 LLAVDGRVHLNFGITATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPF 743 (793)
Q Consensus 664 wDl~tg~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~ 743 (793)
+|..+.+.++.|. +|...+..++|||||+ +|++++.|++| |+||+.||.++..+.+
T Consensus 561 vD~~t~kvvR~f~---gh~nritd~~FS~Dgr-WlisasmD~tI-r~wDlpt~~lID~~~v------------------- 616 (910)
T KOG1539|consen 561 VDVVTRKVVREFW---GHGNRITDMTFSPDGR-WLISASMDSTI-RTWDLPTGTLIDGLLV------------------- 616 (910)
T ss_pred EEchhhhhhHHhh---ccccceeeeEeCCCCc-EEEEeecCCcE-EEEeccCcceeeeEec-------------------
Confidence 9999999999886 5778899999999999 99999999999 9999999999982222
Q ss_pred ccCCccEEEEEEcCCCCceeeEeeEEEeCC-CcEEEEcC
Q 003822 744 RDFNMSILAAYTRPSSKSEIVKVNLLASTD-HCDKECSH 781 (793)
Q Consensus 744 ~~h~~~V~sva~~P~~~~~iv~~~ltaS~D-g~VkvW~~ 781 (793)
..+..++.|+|+ .+.++ ++..| ..|.+|..
T Consensus 617 ---d~~~~sls~SPn-gD~LA----T~Hvd~~gIylWsN 647 (910)
T KOG1539|consen 617 ---DSPCTSLSFSPN-GDFLA----TVHVDQNGIYLWSN 647 (910)
T ss_pred ---CCcceeeEECCC-CCEEE----EEEecCceEEEEEc
Confidence 236889999996 34444 66666 78899974
No 124
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=8.7e-18 Score=171.64 Aligned_cols=255 Identities=13% Similarity=0.161 Sum_probs=184.5
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCC--CeEEEEEeccCCCCCEEEEEEeeC-CCCEEEEEEcCCcEEEEEcCCCC
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHEN--ENIVSYIPSFGAMNSVLGLCWLKK-YPSKLIAGSDNGSLKLYDIRHMP 532 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t--~~~i~~l~~~~h~~~V~sv~fs~~-~g~~Lasgs~DgtV~vWDl~~~~ 532 (793)
|.++.|.+ .|+.+|+|+.|++|+|||.++ +....+-....|.+.|..|.|.+| -|+.+|+++.|+++.||.-....
T Consensus 16 ihdVs~D~-~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~ 94 (361)
T KOG2445|consen 16 IHDVSFDF-YGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKS 94 (361)
T ss_pred eeeeeecc-cCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccc
Confidence 89999999 999999999999999999643 333333334489999999999755 48899999999999999864222
Q ss_pred CcccccccCCc-eeEecCCCCeEEEEEccCC--CEEEEEECCCcEEEEECCCCcEE------EEEc------ccCCCCeE
Q 003822 533 PSIRGMHYGAG-TVTFDEFDQLTSVHVNSMD--ELFLASGYSKNIALYDINSGRRL------QVFA------DMHKEHIN 597 (793)
Q Consensus 533 ~~~~~~~~~~~-~~~~~~~~~V~sv~~s~~~--~~lla~g~Dg~I~IWDl~tg~~l------~~~~------~gh~~~V~ 597 (793)
....... +.. .......+.|++|.|.|.. =.+++++.||.++||+...--.+ ..++ ..+..+..
T Consensus 95 ~~~~~~~-Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~ 173 (361)
T KOG2445|consen 95 EEAHGRR-WVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCF 173 (361)
T ss_pred cccccce-eEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcce
Confidence 1111000 111 1122445789999998853 45666678999999987653222 1221 13667788
Q ss_pred EEEEcCCC--CcEEEEEeCC-----CeEEEEECCCC--CccceEEccCCCCeEE-EEEecC----CCEEEEEeCCCeEEE
Q 003822 598 VVKFSNHS--PSIFATSSFD-----QDVKLWDLRQK--PIQPCYTASSSKGNVM-VCFSPD----DHYLLVSAVDNEVRQ 663 (793)
Q Consensus 598 sv~fspdg--~~~LaTgs~D-----g~IrIWDlrt~--~~~~~~~l~~~~~~vs-v~fSpd----g~~Lasgs~Dg~I~I 663 (793)
|+.|+|.. +.+||.|+.+ +.++||..... +...+.++.++..++. ++|.|+ -..||+++.|| |+|
T Consensus 174 CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I 252 (361)
T KOG2445|consen 174 CVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRI 252 (361)
T ss_pred EEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEE
Confidence 99999753 3578888866 46888876543 4556667778877775 999995 35799999999 999
Q ss_pred EEcCCCc-----------------EEEEEeeecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCC
Q 003822 664 LLAVDGR-----------------VHLNFGITATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQT 715 (793)
Q Consensus 664 wDl~tg~-----------------~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~t 715 (793)
|.+...+ .+..+.....|...++.+.|...|. .|++.|.||.| |+|...-
T Consensus 253 ~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGt-iLsStGdDG~V-RLWkany 319 (361)
T KOG2445|consen 253 FKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGT-ILSSTGDDGCV-RLWKANY 319 (361)
T ss_pred EEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeee-EEeecCCCcee-eehhhhh
Confidence 9987311 1233333456777999999999999 99999999999 9997643
No 125
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.81 E-value=1.4e-18 Score=202.17 Aligned_cols=243 Identities=12% Similarity=0.144 Sum_probs=193.0
Q ss_pred ceEEEEEeCCCCCEEEEEeCCCeEEEEECCC----------C--------eEEEEEeccCCCCCEEEEEEeeCCCCEEEE
Q 003822 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHEN----------E--------NIVSYIPSFGAMNSVLGLCWLKKYPSKLIA 516 (793)
Q Consensus 455 ~V~~vafsP~d~~~Lasgs~DG~I~VWd~~t----------~--------~~i~~l~~~~h~~~V~sv~fs~~~g~~Las 516 (793)
.|+|+.|+| ||.+||+|++|+.|.||.... | +.+..+. +|...|..++|+ |++.+||+
T Consensus 71 sv~CVR~S~-dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~--~H~~DV~Dv~Ws-p~~~~lvS 146 (942)
T KOG0973|consen 71 SVNCVRFSP-DGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILR--GHDSDVLDVNWS-PDDSLLVS 146 (942)
T ss_pred ceeEEEECC-CCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEe--cCCCccceeccC-CCccEEEE
Confidence 399999999 999999999999999998762 1 1333444 899999999998 69999999
Q ss_pred EEcCCcEEEEEcCCCCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcc-----c
Q 003822 517 GSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFAD-----M 591 (793)
Q Consensus 517 gs~DgtV~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~-----g 591 (793)
++.|++|.+||..+.+. .. +.-.|.+.|.++.|.|-+.++++-++|++|+||++.+....+.+.. +
T Consensus 147 ~s~DnsViiwn~~tF~~-~~--------vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~ 217 (942)
T KOG0973|consen 147 VSLDNSVIIWNAKTFEL-LK--------VLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESP 217 (942)
T ss_pred ecccceEEEEcccccee-ee--------eeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCC
Confidence 99999999999998733 22 2335667899999999999999999999999999888777777763 1
Q ss_pred CCCCeEEEEEcCCCCcEEEEEeC----CCeEEEEECCCCCccceEEccCCCCeE-EEEEecC-------------CC---
Q 003822 592 HKEHINVVKFSNHSPSIFATSSF----DQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPD-------------DH--- 650 (793)
Q Consensus 592 h~~~V~sv~fspdg~~~LaTgs~----Dg~IrIWDlrt~~~~~~~~l~~~~~~v-sv~fSpd-------------g~--- 650 (793)
-......+.|+||| ++|++... -.++.|.+-.+. .....+-||..++ .++|+|. +.
T Consensus 218 ~~T~f~RlSWSPDG-~~las~nA~n~~~~~~~IieR~tW--k~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y 294 (942)
T KOG0973|consen 218 LTTFFLRLSWSPDG-HHLASPNAVNGGKSTIAIIERGTW--KVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYY 294 (942)
T ss_pred CcceeeecccCCCc-CeecchhhccCCcceeEEEecCCc--eeeeeeecCCCceEEEEeChHHhccccccCCccCCCcce
Confidence 23467789999999 88887654 345888887655 3345556777766 4899882 11
Q ss_pred -EEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCc
Q 003822 651 -YLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGR 717 (793)
Q Consensus 651 -~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~ 717 (793)
.+|+|+.|++|.||.....+++... +.--...+..++|+|||- .|+++|.||+| .+..++..+
T Consensus 295 ~i~AvgSqDrSlSVW~T~~~RPl~vi--~~lf~~SI~DmsWspdG~-~LfacS~DGtV-~~i~Fee~E 358 (942)
T KOG0973|consen 295 CIAAVGSQDRSLSVWNTALPRPLFVI--HNLFNKSIVDMSWSPDGF-SLFACSLDGTV-ALIHFEEKE 358 (942)
T ss_pred EEEEEecCCccEEEEecCCCCchhhh--hhhhcCceeeeeEcCCCC-eEEEEecCCeE-EEEEcchHH
Confidence 5788999999999998777765433 233456799999999999 89999999999 999987643
No 126
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=3.9e-18 Score=182.06 Aligned_cols=270 Identities=17% Similarity=0.215 Sum_probs=207.7
Q ss_pred ceeeccccccccccccCceeeeeccCCCCCCCCcccceEEEEEeCCCCC-EEEEEeCCCeEEEEECCCCeEEEEEeccCC
Q 003822 419 FYTRSLCAAKVGSSAWPCLHTLTVSGNHMGDENRSFRPRQFEYHPSISC-LMVFGTLDGEIVVVNHENENIVSYIPSFGA 497 (793)
Q Consensus 419 ~y~r~l~~~kl~~~~~p~~~~l~~~g~~~~~~~~~~~V~~vafsP~d~~-~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h 497 (793)
.+.+.+...+++.-..|.++++.+.+ +.+.+.+|+| +|. .+++++...-+++||+.+.+....-+..++
T Consensus 232 G~d~~lrifqvDGk~N~~lqS~~l~~---------fPi~~a~f~p-~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~ 301 (514)
T KOG2055|consen 232 GLDGTLRIFQVDGKVNPKLQSIHLEK---------FPIQKAEFAP-NGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGV 301 (514)
T ss_pred cCCCcEEEEEecCccChhheeeeecc---------CccceeeecC-CCceEEEecccceEEEEeeccccccccccCCCCc
Confidence 34444444444433456676665433 4478999999 666 999999999999999999887655444455
Q ss_pred C-CCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEE
Q 003822 498 M-NSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIAL 576 (793)
Q Consensus 498 ~-~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~I 576 (793)
. ..+.....+ +++++|+..+..|.|.+....+++. ..++...+.|..+.|++++..+++++.+|.|++
T Consensus 302 e~~~~e~FeVS-hd~~fia~~G~~G~I~lLhakT~el----------i~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v 370 (514)
T KOG2055|consen 302 EEKSMERFEVS-HDSNFIAIAGNNGHIHLLHAKTKEL----------ITSFKIEGVVSDFTFSSDSKELLASGGTGEVYV 370 (514)
T ss_pred ccchhheeEec-CCCCeEEEcccCceEEeehhhhhhh----------hheeeeccEEeeEEEecCCcEEEEEcCCceEEE
Confidence 4 244555555 7899999999999999999888664 234455577999999999999999999999999
Q ss_pred EECCCCcEEEEEcccCCCCe--EEEEEcCCCCcEEEEEeCCCeEEEEECCC----CCccceEEccCCCCeE-EEEEecCC
Q 003822 577 YDINSGRRLQVFADMHKEHI--NVVKFSNHSPSIFATSSFDQDVKLWDLRQ----KPIQPCYTASSSKGNV-MVCFSPDD 649 (793)
Q Consensus 577 WDl~tg~~l~~~~~gh~~~V--~sv~fspdg~~~LaTgs~Dg~IrIWDlrt----~~~~~~~~l~~~~~~v-sv~fSpdg 649 (793)
||++...+++++.. .+.| ++++.++++ .+||+|+..|.|.|||..+ ..++|+.++..-...+ ++.|+||+
T Consensus 371 ~nl~~~~~~~rf~D--~G~v~gts~~~S~ng-~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~ 447 (514)
T KOG2055|consen 371 WNLRQNSCLHRFVD--DGSVHGTSLCISLNG-SYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDA 447 (514)
T ss_pred EecCCcceEEEEee--cCccceeeeeecCCC-ceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcch
Confidence 99999999999983 3444 567777888 7999999999999999764 3456666655444444 59999999
Q ss_pred CEEEEEeC--CCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcC
Q 003822 650 HYLLVSAV--DNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQ 714 (793)
Q Consensus 650 ~~Lasgs~--Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~ 714 (793)
+.||.+|. .+.+++-.+.+......+......-..+.+++|+|.|+ |++.|..+|++ .+|.+.
T Consensus 448 qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG-~lAvGNe~grv-~l~kL~ 512 (514)
T KOG2055|consen 448 QILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSG-YLAVGNEAGRV-HLFKLH 512 (514)
T ss_pred hhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCc-eEEeecCCCce-eeEeec
Confidence 99988874 67899998888776666654444446788999999999 99999999999 999763
No 127
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.81 E-value=1.1e-18 Score=192.72 Aligned_cols=248 Identities=15% Similarity=0.197 Sum_probs=189.2
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCe--EEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCC
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENEN--IVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPP 533 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~--~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~ 533 (793)
|..++... +++.|++++.|-+|++|+...+. ++.++. .|.+-|.++++..++...+|+||.|+.|.+||++++..
T Consensus 76 VNDiiL~~-~~~tlIS~SsDtTVK~W~~~~~~~~c~stir--~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~ 152 (735)
T KOG0308|consen 76 VNDIILCG-NGKTLISASSDTTVKVWNAHKDNTFCMSTIR--THKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTA 152 (735)
T ss_pred HhhHHhhc-CCCceEEecCCceEEEeecccCcchhHhhhh--cccchheeeeecccCceeEEecCCCccEEEEEccCcch
Confidence 44455555 77899999999999999998774 455555 89999999998546778999999999999999998743
Q ss_pred cccc-c-ccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEE
Q 003822 534 SIRG-M-HYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFAT 611 (793)
Q Consensus 534 ~~~~-~-~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaT 611 (793)
.... . ..........+..+|++++.++.+..+++||..+.+++||.++++.+..++ ||+..|.++..+++| ..+++
T Consensus 153 ~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLr-GHTdNVr~ll~~dDG-t~~ls 230 (735)
T KOG0308|consen 153 TLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLR-GHTDNVRVLLVNDDG-TRLLS 230 (735)
T ss_pred hhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeee-ccccceEEEEEcCCC-CeEee
Confidence 1111 1 111111122556789999999888888888889999999999999999999 799999999999999 89999
Q ss_pred EeCCCeEEEEECCCCCccceEEccCCCCeEEEEEecCCCEEEEEeCCCeEEEEEcCCCc-EEEEEeeecCCCCCcEEEEE
Q 003822 612 SSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLVSAVDNEVRQLLAVDGR-VHLNFGITATGSSQNYTRSY 690 (793)
Q Consensus 612 gs~Dg~IrIWDlrt~~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~-~~~~l~~~~~~~~~v~s~af 690 (793)
+|.||+|++||+....+...+..+. .++.++..+|+=.++++|+.||.|..=|+++.. ....++ ....+..+..
T Consensus 231 ~sSDgtIrlWdLgqQrCl~T~~vH~-e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick----~daPv~~l~~ 305 (735)
T KOG0308|consen 231 ASSDGTIRLWDLGQQRCLATYIVHK-EGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICK----EDAPVLKLHL 305 (735)
T ss_pred cCCCceEEeeeccccceeeeEEecc-CceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeec----CCCchhhhhh
Confidence 9999999999999886655544332 235578888999999999999999999998853 322222 2233444555
Q ss_pred eeCCCeEEEEEeCCCcEEEEEEcCC
Q 003822 691 YLNGRDYIVSGSCDEHVVRICCAQT 715 (793)
Q Consensus 691 spdg~~~L~Sgs~Dg~II~IWDv~t 715 (793)
..... -+-+++.|+.| +-|...-
T Consensus 306 ~~~~~-~~WvtTtds~I-~rW~~~~ 328 (735)
T KOG0308|consen 306 HEHDN-SVWVTTTDSSI-KRWKLEP 328 (735)
T ss_pred ccccC-Cceeeeccccc-eecCCcc
Confidence 54343 34777889999 9996543
No 128
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.80 E-value=2.3e-19 Score=186.36 Aligned_cols=254 Identities=18% Similarity=0.273 Sum_probs=196.4
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcc
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSI 535 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~ 535 (793)
|+.++++. ..+++++.|.+|+.|.++. ....++- ....+..+.-+ ..++.++|+|.+ |.|||.+...+..
T Consensus 112 V~Gi~v~~---~~~~tvgdDKtvK~wk~~~-~p~~til---g~s~~~gIdh~-~~~~~FaTcGe~--i~IWD~~R~~Pv~ 181 (433)
T KOG0268|consen 112 VRGICVTQ---TSFFTVGDDKTVKQWKIDG-PPLHTIL---GKSVYLGIDHH-RKNSVFATCGEQ--IDIWDEQRDNPVS 181 (433)
T ss_pred eeeEEecc---cceEEecCCcceeeeeccC-Ccceeee---ccccccccccc-cccccccccCce--eeecccccCCccc
Confidence 78888876 6789999999999999875 3555553 34567777754 456789999875 9999997654421
Q ss_pred cccccCCceeEecCCCCeEEEEEccCCCEEEEEE-CCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeC
Q 003822 536 RGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASG-YSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSF 614 (793)
Q Consensus 536 ~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g-~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~ 614 (793)
...+ ..+.|.++.|+|....+++++ .|+.|.+||++++.+++.+. -...-+.|+|+|.+ ..|++|+.
T Consensus 182 --------smsw-G~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi--~~mRTN~IswnPea-fnF~~a~E 249 (433)
T KOG0268|consen 182 --------SMSW-GADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVI--LTMRTNTICWNPEA-FNFVAANE 249 (433)
T ss_pred --------eeec-CCCceeEEecCCCcchheeeeccCCceEEEecccCCccceee--eeccccceecCccc-cceeeccc
Confidence 1111 225689999999887777776 89999999999999998876 55667899999976 88999999
Q ss_pred CCeEEEEECCCCCccceEEccCCCCeE-EEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeC
Q 003822 615 DQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLN 693 (793)
Q Consensus 615 Dg~IrIWDlrt~~~~~~~~l~~~~~~v-sv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspd 693 (793)
|..++.||+|.-. .++....+|...+ .+.|||.|+-+++|+.|.+|+||.+..+.....+. ...-..+.++.|+.|
T Consensus 250 D~nlY~~DmR~l~-~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYh--tkRMq~V~~Vk~S~D 326 (433)
T KOG0268|consen 250 DHNLYTYDMRNLS-RPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYH--TKRMQHVFCVKYSMD 326 (433)
T ss_pred cccceehhhhhhc-ccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhh--HhhhheeeEEEEecc
Confidence 9999999999743 4555566676666 59999999999999999999999998886533331 122346889999999
Q ss_pred CCeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCCCCccceeeec
Q 003822 694 GRDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKGSGTSMFVQSL 738 (793)
Q Consensus 694 g~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl 738 (793)
.+ ||+|||+|++| ++|.....+.+. .+...+.....|-..|
T Consensus 327 sk-yi~SGSdd~nv-RlWka~Aseklg--v~t~rEk~~~~Y~e~L 367 (433)
T KOG0268|consen 327 SK-YIISGSDDGNV-RLWKAKASEKLG--VITPREKNKLEYNEAL 367 (433)
T ss_pred cc-EEEecCCCcce-eeeecchhhhcC--CCChhHHHHHHHHHHH
Confidence 99 99999999999 999999888887 5555443333444444
No 129
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.80 E-value=2.6e-18 Score=189.30 Aligned_cols=257 Identities=17% Similarity=0.211 Sum_probs=187.3
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcc
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSI 535 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~ 535 (793)
|-.++|-| ....|++++.|.++++||+++++.+..-...||.+.|.+++|.+.+...|++|+.||.|.|||++-.....
T Consensus 103 ifDl~wap-ge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~ 181 (720)
T KOG0321|consen 103 IFDLKWAP-GESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDA 181 (720)
T ss_pred eEeeccCC-CceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhh
Confidence 88899999 88999999999999999999988877633449999999999998899999999999999999997433100
Q ss_pred ---------ccccc---CCcee------EecC----CCCeEEEEEccCCCEEEEEEC-CCcEEEEECCCCcEEEEEcc--
Q 003822 536 ---------RGMHY---GAGTV------TFDE----FDQLTSVHVNSMDELFLASGY-SKNIALYDINSGRRLQVFAD-- 590 (793)
Q Consensus 536 ---------~~~~~---~~~~~------~~~~----~~~V~sv~~s~~~~~lla~g~-Dg~I~IWDl~tg~~l~~~~~-- 590 (793)
..+.+ +.... ...+ .+.|+.+.| .++..++++|. |+.|+|||+++.........
T Consensus 182 ~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~f-kDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~ 260 (720)
T KOG0321|consen 182 LEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLF-KDESTLASAGAADSTIKVWDLRKNYTAYRQEPRG 260 (720)
T ss_pred HHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEE-eccceeeeccCCCcceEEEeecccccccccCCCc
Confidence 00000 00000 0011 133555666 78888888886 99999999997654432210
Q ss_pred -----cC---CCCeEEEEEcCCCCcEEEEEeCCCeEEEEECCCCCccceEEccCCCCeE---EEEEecCCCEEEEEeCCC
Q 003822 591 -----MH---KEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV---MVCFSPDDHYLLVSAVDN 659 (793)
Q Consensus 591 -----gh---~~~V~sv~fspdg~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~~~~v---sv~fSpdg~~Lasgs~Dg 659 (793)
.| .-.+.++.....|..++|+|. |+.|.+|++++....++..+.++.... .-..+||+.++++|+.|.
T Consensus 261 ~~~~~t~skrs~G~~nL~lDssGt~L~AsCt-D~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~ 339 (720)
T KOG0321|consen 261 SDKYPTHSKRSVGQVNLILDSSGTYLFASCT-DNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDE 339 (720)
T ss_pred ccCccCcccceeeeEEEEecCCCCeEEEEec-CCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCc
Confidence 12 335677777777855555554 999999999987767766665543322 356789999999999999
Q ss_pred eEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcE
Q 003822 660 EVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRR 718 (793)
Q Consensus 660 ~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~ 718 (793)
..++|.+.+...-..+ ...|...|..+.|.|..-.-++++++|.++ +||++..+-.
T Consensus 340 ~ayiw~vs~~e~~~~~--l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~-kiW~l~~~l~ 395 (720)
T KOG0321|consen 340 QAYIWVVSSPEAPPAL--LLGHTREVTTVRWLPSATTPVATCSDDFRV-KIWRLSNGLE 395 (720)
T ss_pred ceeeeeecCccCChhh--hhCcceEEEEEeeccccCCCceeeccCcce-EEEeccCchh
Confidence 9999999876543222 235666788889977554458888999999 9999966533
No 130
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=4.2e-18 Score=176.20 Aligned_cols=284 Identities=12% Similarity=0.172 Sum_probs=194.0
Q ss_pred CEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeC-CCCEEEEEEcCCcEEEEEcCCCCCcccccccCCcee
Q 003822 467 CLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKK-YPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTV 545 (793)
Q Consensus 467 ~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~-~g~~Lasgs~DgtV~vWDl~~~~~~~~~~~~~~~~~ 545 (793)
..+|++...|+|++||..+++.+..++ ++...+..+.|... .+..+.+|+.||+|++||++......+......
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk--~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~--- 115 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFK--GPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQ--- 115 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheec--CCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCC---
Confidence 578999999999999999999998887 78888999999754 567899999999999999998665322211111
Q ss_pred EecCCCCeEEEEEccCCCEEEEEE----CCCcEEEEECCCCcE-EEEEcccCCCCeEEEEEcCCCCcEEEEEeCCCeEEE
Q 003822 546 TFDEFDQLTSVHVNSMDELFLASG----YSKNIALYDINSGRR-LQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKL 620 (793)
Q Consensus 546 ~~~~~~~V~sv~~s~~~~~lla~g----~Dg~I~IWDl~tg~~-l~~~~~gh~~~V~sv~fspdg~~~LaTgs~Dg~IrI 620 (793)
...+..+++.+..++.+.++. .+..|.+||++..+. +..+...|.+.|+++.|+|..|++|+|||.||.|.+
T Consensus 116 ---~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnl 192 (376)
T KOG1188|consen 116 ---SGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNL 192 (376)
T ss_pred ---CCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEe
Confidence 123567777766667776664 368899999998765 777777899999999999999999999999999999
Q ss_pred EECCCCCc-cceEEccCCCC-eEEEEEecCC-CEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCC---C-----CcEEEE
Q 003822 621 WDLRQKPI-QPCYTASSSKG-NVMVCFSPDD-HYLLVSAVDNEVRQLLAVDGRVHLNFGITATGS---S-----QNYTRS 689 (793)
Q Consensus 621 WDlrt~~~-~~~~~l~~~~~-~vsv~fSpdg-~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~---~-----~v~s~a 689 (793)
||+..... .++...-.+.. +-.+.|..++ +.|.+-+..+...+|++..+.....+....... . .-..-.
T Consensus 193 fD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~ 272 (376)
T KOG1188|consen 193 FDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINE 272 (376)
T ss_pred eecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeec
Confidence 99986521 12222222333 4459999877 458888889999999999988654443210000 0 011112
Q ss_pred EeeCCCeEEEEEeC-CCcEEEEE---EcCCCcEEEeeeecCCCCCccceeeeccCCccccCCccEEEEEEcCCCCceeeE
Q 003822 690 YYLNGRDYIVSGSC-DEHVVRIC---CAQTGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKSEIVK 765 (793)
Q Consensus 690 fspdg~~~L~Sgs~-Dg~II~IW---Dv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~~~~iv~ 765 (793)
.+|.+....+.++. -+.. .++ |..++..+. -+..+. .+|...|+++.|.. ....+.
T Consensus 273 ~~~~~~~~~~l~g~~~n~~-~~~~~~~~~s~~~~~-------------~~a~l~----g~~~eiVR~i~~~~-~~~~l~- 332 (376)
T KOG1188|consen 273 HSPGDKDTCALAGTDSNKG-TIFPLVDTSSGSLLT-------------EPAILQ----GGHEEIVRDILFDV-KNDVLY- 332 (376)
T ss_pred ccCCCcceEEEeccccCce-eEEEeeecccccccC-------------cccccc----CCcHHHHHHHhhhc-ccceee-
Confidence 33444335555444 3444 444 333443332 111111 13445677776664 444444
Q ss_pred eeEEEeCCCcEEEEcC
Q 003822 766 VNLLASTDHCDKECSH 781 (793)
Q Consensus 766 ~~ltaS~Dg~VkvW~~ 781 (793)
+|+.||.+.+|..
T Consensus 333 ---TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 333 ---TGGEDGLLQAWKV 345 (376)
T ss_pred ---ccCCCceEEEEec
Confidence 9999999999994
No 131
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.79 E-value=2.1e-18 Score=183.56 Aligned_cols=250 Identities=17% Similarity=0.225 Sum_probs=185.7
Q ss_pred eEEEEEeCC------CCCEEEEEeCCCeEEEEECCCCeE-------------------EEEEeccCCCCCEEEEEEeeCC
Q 003822 456 PRQFEYHPS------ISCLMVFGTLDGEIVVVNHENENI-------------------VSYIPSFGAMNSVLGLCWLKKY 510 (793)
Q Consensus 456 V~~vafsP~------d~~~Lasgs~DG~I~VWd~~t~~~-------------------i~~l~~~~h~~~V~sv~fs~~~ 510 (793)
+.|++|... .|+++|.|+.|..|.|||+.-... .+.....+|+..|.+++|....
T Consensus 176 PLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~ 255 (463)
T KOG0270|consen 176 PLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNF 255 (463)
T ss_pred chhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhcccc
Confidence 556666531 467999999999999999752110 0111234799999999998666
Q ss_pred CCEEEEEEcCCcEEEEEcCCCCCcccccccCCceeEe-cCCCCeEEEEEccCCCE-EEEEECCCcEEEEECCC-CcEEEE
Q 003822 511 PSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTF-DEFDQLTSVHVNSMDEL-FLASGYSKNIALYDINS-GRRLQV 587 (793)
Q Consensus 511 g~~Lasgs~DgtV~vWDl~~~~~~~~~~~~~~~~~~~-~~~~~V~sv~~s~~~~~-lla~g~Dg~I~IWDl~t-g~~l~~ 587 (793)
.+.||+||.|.+|++||+.++++. .++ .|...|.++.|+|..+. +++|+.|++|.+.|.+. +..-..
T Consensus 256 ~nVLaSgsaD~TV~lWD~~~g~p~----------~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~ 325 (463)
T KOG0270|consen 256 RNVLASGSADKTVKLWDVDTGKPK----------SSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKE 325 (463)
T ss_pred ceeEEecCCCceEEEEEcCCCCcc----------eehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCce
Confidence 789999999999999999998872 223 35578999999998765 55556799999999994 222233
Q ss_pred EcccCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEECCCCCccceEEccCCCCeEE-EEEecC-CCEEEEEeCCCeEEEEE
Q 003822 588 FADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVM-VCFSPD-DHYLLVSAVDNEVRQLL 665 (793)
Q Consensus 588 ~~~gh~~~V~sv~fspdg~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~~~~vs-v~fSpd-g~~Lasgs~Dg~I~IwD 665 (793)
++ ..+.|-.++|+|..+..+++++.||+|+-+|+|... .+++++..|...++ +++++. ...+++++.|+.|++|+
T Consensus 326 wk--~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~-~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~ 402 (463)
T KOG0270|consen 326 WK--FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPG-KPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWK 402 (463)
T ss_pred EE--eccceEEEEecCCCceeEEEecCCceEEeeecCCCC-CceeEEEeccCCcceEEecCCCCcceeeccccceEEEEe
Confidence 33 557899999999999999999999999999999864 78899999988886 888875 45678899999999999
Q ss_pred cCCCcEEEEEeeecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEE
Q 003822 666 AVDGRVHLNFGITATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRLR 720 (793)
Q Consensus 666 l~tg~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~ 720 (793)
+.......... +...-....+.++.|+-..+++.|+..+.+ +|||+.++..+.
T Consensus 403 ~~~~~~~~v~~-~~~~~~rl~c~~~~~~~a~~la~GG~k~~~-~vwd~~~~~~V~ 455 (463)
T KOG0270|consen 403 FDVDSPKSVKE-HSFKLGRLHCFALDPDVAFTLAFGGEKAVL-RVWDIFTNSPVR 455 (463)
T ss_pred ecCCCCccccc-ccccccceeecccCCCcceEEEecCccceE-EEeecccChhHH
Confidence 86543311111 000111233455667766578888888867 999998877654
No 132
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=8.4e-18 Score=175.53 Aligned_cols=303 Identities=11% Similarity=0.089 Sum_probs=220.4
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCC------CeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcC
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHEN------ENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIR 529 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t------~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~ 529 (793)
|.++.|+. ++++||+|+.|..+++|+++. .+++... .+.|...|.+++|. ....++++|+.+++|...|++
T Consensus 59 iNAlqFS~-N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~-~~~H~SNIF~L~F~-~~N~~~~SG~~~~~VI~HDiE 135 (609)
T KOG4227|consen 59 INALQFSH-NDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVM-EHPHRSNIFSLEFD-LENRFLYSGERWGTVIKHDIE 135 (609)
T ss_pred cceeeecc-CCeEEeecCCcceeeeechHHHHhhcCCCCceec-cCccccceEEEEEc-cCCeeEecCCCcceeEeeecc
Confidence 89999999 799999999999999999853 3444433 34677899999996 566789999999999999999
Q ss_pred CCCCcccccccCCceeEecCC---CCeEEEEEccCCCEEEEEECCCcEEEEECCCCc-EEEEEc-ccCCCCeEEEEEcCC
Q 003822 530 HMPPSIRGMHYGAGTVTFDEF---DQLTSVHVNSMDELFLASGYSKNIALYDINSGR-RLQVFA-DMHKEHINVVKFSNH 604 (793)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~---~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~-~l~~~~-~gh~~~V~sv~fspd 604 (793)
+.+. ...+.+. +.|+.+..+|.++.+++++.+|.|.+||++... +...+. .........+.|+|.
T Consensus 136 t~qs----------i~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~ 205 (609)
T KOG4227|consen 136 TKQS----------IYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPE 205 (609)
T ss_pred ccee----------eeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCC
Confidence 8654 2233333 479999999999999999999999999999754 222221 124556788999999
Q ss_pred CCcEEEEEeCCCeEEEEECCCCCccceEEc------cC-CCCeEEEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEee
Q 003822 605 SPSIFATSSFDQDVKLWDLRQKPIQPCYTA------SS-SKGNVMVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGI 677 (793)
Q Consensus 605 g~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l------~~-~~~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~ 677 (793)
.|.+|++.+..+-+-+||.+... .+++.. +. ...+..+.|+|.|..+++--....-.+||+.+.++. .++.
T Consensus 206 ~P~Li~~~~~~~G~~~~D~R~~~-~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~-V~k~ 283 (609)
T KOG4227|consen 206 TPALILVNSETGGPNVFDRRMQA-RPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCF-VLKS 283 (609)
T ss_pred CceeEEeccccCCCCceeecccc-chHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccce-eEec
Confidence 99999999999999999999753 333322 21 223346899999999998877666778898876652 2322
Q ss_pred ecC--CC---CCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCC--CCccceeeeccCCccccCCccE
Q 003822 678 TAT--GS---SQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKG--SGTSMFVQSLRGDPFRDFNMSI 750 (793)
Q Consensus 678 ~~~--~~---~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~--~~~s~~v~sl~g~~~~~h~~~V 750 (793)
... +- ..+-+++|..|- .+++|+.+-.+ ++|.+.....-..++--||. ..++..+..-....+++|.+.+
T Consensus 284 D~N~~GY~N~~T~KS~~F~~D~--~v~tGSD~~~i-~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~ 360 (609)
T KOG4227|consen 284 DHNPNGYCNIKTIKSMTFIDDY--TVATGSDHWGI-HIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVP 360 (609)
T ss_pred cCCCCcceeeeeeeeeeeecce--eeeccCcccce-EEEecCCCccccCccccCcchhhCchhheecceeEEEecccccc
Confidence 111 11 123344555444 59999999999 99999877666655666663 1223322223335677999999
Q ss_pred EEEEEcCCCCceeeEeeEEEeCCCcEEEEcC
Q 003822 751 LAAYTRPSSKSEIVKVNLLASTDHCDKECSH 781 (793)
Q Consensus 751 ~sva~~P~~~~~iv~~~ltaS~Dg~VkvW~~ 781 (793)
+.|.|+|. .++|+ +.+-...+|+|+.
T Consensus 361 NQVRF~~H-~~~l~----SSGVE~~~KlWS~ 386 (609)
T KOG4227|consen 361 NQVRFSQH-NNLLV----SSGVENSFKLWSD 386 (609)
T ss_pred cceeecCC-cceEe----ccchhhheecccc
Confidence 99999996 34444 4455689999984
No 133
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=8.1e-18 Score=180.16 Aligned_cols=284 Identities=13% Similarity=0.099 Sum_probs=204.6
Q ss_pred EEEeCC-CeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEE-cCCcEEEEEcCCCCCcccccccCCceeEe
Q 003822 470 VFGTLD-GEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGS-DNGSLKLYDIRHMPPSIRGMHYGAGTVTF 547 (793)
Q Consensus 470 asgs~D-G~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs-~DgtV~vWDl~~~~~~~~~~~~~~~~~~~ 547 (793)
.+++.| .++.+||+.+|....+++..+ ...-.++.- -++.+++++. .-..+.+|.+....... ...
T Consensus 11 sssS~d~~~~~~~dl~TGt~~~~ykg~~-~a~~~sl~~--l~~~yllsaq~~rp~l~vw~i~k~~~~~---------q~~ 78 (476)
T KOG0646|consen 11 SSSSFDPINCIVWDLRTGTSLLQYKGSY-LAQAASLTA--LNNEYLLSAQLKRPLLHVWEILKKDQVV---------QYI 78 (476)
T ss_pred eccCCCCcceeEEecCCCceeEEecCcc-cccchhhhh--hchhheeeecccCccccccccCchhhhh---------hhc
Confidence 334444 459999999999887776321 111222222 2345666665 44579999998754422 112
Q ss_pred cCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEECCC--
Q 003822 548 DEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQ-- 625 (793)
Q Consensus 548 ~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~Dg~IrIWDlrt-- 625 (793)
.-+++|.+++-+|.+.++++|+-.|.+++|.+.+|..+..+. +|-..|+++.|+.|| .+|+||+.||.|.+|++-.
T Consensus 79 v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~-aHYQ~ITcL~fs~dg-s~iiTgskDg~V~vW~l~~lv 156 (476)
T KOG0646|consen 79 VLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLS-AHYQSITCLKFSDDG-SHIITGSKDGAVLVWLLTDLV 156 (476)
T ss_pred ccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHH-hhccceeEEEEeCCC-cEEEecCCCccEEEEEEEeec
Confidence 234779999987777777777789999999999999999997 799999999999999 8999999999999998742
Q ss_pred -----CCccceEEccCCCCeEE-EEE--ecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCCCeE
Q 003822 626 -----KPIQPCYTASSSKGNVM-VCF--SPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNGRDY 697 (793)
Q Consensus 626 -----~~~~~~~~l~~~~~~vs-v~f--Spdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg~~~ 697 (793)
....+...+..|.-.++ +.. .+...++++++.|.++++||+..|.++.++.. ...+.+++..|-+. .
T Consensus 157 ~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~f----p~si~av~lDpae~-~ 231 (476)
T KOG0646|consen 157 SADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITF----PSSIKAVALDPAER-V 231 (476)
T ss_pred ccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEec----CCcceeEEEccccc-E
Confidence 34567788888887764 444 44457899999999999999999999888853 44677899999998 9
Q ss_pred EEEEeCCCcEEEEEEcCCCc--EEEeeeecCCCCCccceeeeccCCccccCCc--cEEEEEEcCCCCceeeEeeEEEeCC
Q 003822 698 IVSGSCDEHVVRICCAQTGR--RLRDISLEGKGSGTSMFVQSLRGDPFRDFNM--SILAAYTRPSSKSEIVKVNLLASTD 773 (793)
Q Consensus 698 L~Sgs~Dg~II~IWDv~tg~--~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~--~V~sva~~P~~~~~iv~~~ltaS~D 773 (793)
+..|+.+|.| .+.++.... ......-.+|. ...-+ ..+.||.+ .|.+++.+-+ ...++ +|+.|
T Consensus 232 ~yiGt~~G~I-~~~~~~~~~~~~~~v~~k~~~~--~~t~~-----~~~~Gh~~~~~ITcLais~D-gtlLl----SGd~d 298 (476)
T KOG0646|consen 232 VYIGTEEGKI-FQNLLFKLSGQSAGVNQKGRHE--ENTQI-----NVLVGHENESAITCLAISTD-GTLLL----SGDED 298 (476)
T ss_pred EEecCCcceE-EeeehhcCCccccccccccccc--cccee-----eeeccccCCcceeEEEEecC-ccEEE----eeCCC
Confidence 9999999998 777765432 22100001111 11112 23445666 8999999985 44455 88999
Q ss_pred CcEEEEcCCCCC
Q 003822 774 HCDKECSHGQHS 785 (793)
Q Consensus 774 g~VkvW~~~~~~ 785 (793)
|.|.||+...++
T Consensus 299 g~VcvWdi~S~Q 310 (476)
T KOG0646|consen 299 GKVCVWDIYSKQ 310 (476)
T ss_pred CCEEEEecchHH
Confidence 999999987765
No 134
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=1.1e-16 Score=156.87 Aligned_cols=242 Identities=14% Similarity=0.189 Sum_probs=181.4
Q ss_pred ceEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeE---EEEEeccCCCCCEEEEEEee---CCCCEEEEEE-cCCcEEEEE
Q 003822 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENI---VSYIPSFGAMNSVLGLCWLK---KYPSKLIAGS-DNGSLKLYD 527 (793)
Q Consensus 455 ~V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~---i~~l~~~~h~~~V~sv~fs~---~~g~~Lasgs-~DgtV~vWD 527 (793)
.|+|.+|+| .+.++++|+.|.+|++.-.+.... -..+.+.-|.+.|..++|.. ..+..|++++ .|..|.+-|
T Consensus 91 siyc~~ws~-~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~td 169 (350)
T KOG0641|consen 91 SIYCTAWSP-CGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITD 169 (350)
T ss_pred cEEEEEecC-ccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEee
Confidence 399999999 999999999999999986653222 12233346889999999973 1245677765 567777777
Q ss_pred cCCCCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcc------cCCCCeEEEEE
Q 003822 528 IRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFAD------MHKEHINVVKF 601 (793)
Q Consensus 528 l~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~------gh~~~V~sv~f 601 (793)
...++.. ..+. .|.+.|.++-- -++-.+++++.|.+|++||++-..++.++.. -....|.+++.
T Consensus 170 c~~g~~~-~a~s--------ghtghilalys-wn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~v 239 (350)
T KOG0641|consen 170 CGRGQGF-HALS--------GHTGHILALYS-WNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAV 239 (350)
T ss_pred cCCCCcc-eeec--------CCcccEEEEEE-ecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEE
Confidence 7776541 1122 23344555421 3566777777899999999999888887752 12367899999
Q ss_pred cCCCCcEEEEEeCCCeEEEEECCCCCccceEEccCCCCeE-EEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEE--eee
Q 003822 602 SNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNF--GIT 678 (793)
Q Consensus 602 spdg~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~~~~v-sv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l--~~~ 678 (793)
.|.| .+|++|-.|....+||+|.+ .++..+..|...+ ++.|+|...|+++++.|..|++-|+... +...+ -..
T Consensus 240 dpsg-rll~sg~~dssc~lydirg~--r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgd-la~el~~~vv 315 (350)
T KOG0641|consen 240 DPSG-RLLASGHADSSCMLYDIRGG--RMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGD-LAHELPIMVV 315 (350)
T ss_pred CCCc-ceeeeccCCCceEEEEeeCC--ceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccc-hhhcCceEEE
Confidence 9999 89999999999999999998 4556666666555 6999999999999999999999998642 21111 122
Q ss_pred cCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEc
Q 003822 679 ATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCA 713 (793)
Q Consensus 679 ~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv 713 (793)
..+...+..+.|.|.+- -+++.+.|.++ .+|-+
T Consensus 316 ~ehkdk~i~~rwh~~d~-sfisssadkt~-tlwa~ 348 (350)
T KOG0641|consen 316 AEHKDKAIQCRWHPQDF-SFISSSADKTA-TLWAL 348 (350)
T ss_pred EeccCceEEEEecCccc-eeeeccCcceE-EEecc
Confidence 35677888999999987 78899999999 99965
No 135
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=3.1e-18 Score=169.98 Aligned_cols=252 Identities=14% Similarity=0.137 Sum_probs=184.6
Q ss_pred CCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCC--cccccccCCceeEecCCCCeEEEEEcc--CCCEEEEEECC
Q 003822 496 GAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPP--SIRGMHYGAGTVTFDEFDQLTSVHVNS--MDELFLASGYS 571 (793)
Q Consensus 496 ~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~--~~~~~~~~~~~~~~~~~~~V~sv~~s~--~~~~lla~g~D 571 (793)
.|.+.|..+.. ...|..|||++.|++|+|+.++.... .+..+ -.|.++|+.++|.. .+..++++++|
T Consensus 9 ~H~D~IHda~l-DyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L--------~Gh~GPVwqv~wahPk~G~iLAScsYD 79 (299)
T KOG1332|consen 9 QHEDMIHDAQL-DYYGKRLATCSSDGTVKIFEVRNNGQSKLLAEL--------TGHSGPVWKVAWAHPKFGTILASCSYD 79 (299)
T ss_pred hhhhhhhHhhh-hhhcceeeeecCCccEEEEEEcCCCCceeeeEe--------cCCCCCeeEEeecccccCcEeeEeecC
Confidence 68888887664 25689999999999999999988654 22222 24558899999965 46677777789
Q ss_pred CcEEEEECCCCcEE--EEEcccCCCCeEEEEEcCCC-CcEEEEEeCCCeEEEEECCCC-CccceEEccCC-CCeEEEEEe
Q 003822 572 KNIALYDINSGRRL--QVFADMHKEHINVVKFSNHS-PSIFATSSFDQDVKLWDLRQK-PIQPCYTASSS-KGNVMVCFS 646 (793)
Q Consensus 572 g~I~IWDl~tg~~l--~~~~~gh~~~V~sv~fspdg-~~~LaTgs~Dg~IrIWDlrt~-~~~~~~~l~~~-~~~vsv~fS 646 (793)
|.|.||.-..|+-. ..+. .|...|++|+|.|.+ +..|++++.||.|.|.+.+.. ..........| .++.+++|.
T Consensus 80 gkVIiWke~~g~w~k~~e~~-~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswa 158 (299)
T KOG1332|consen 80 GKVIIWKEENGRWTKAYEHA-AHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWA 158 (299)
T ss_pred ceEEEEecCCCchhhhhhhh-hhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeec
Confidence 99999999887533 3344 699999999999975 367899999999999998875 21111122233 355579999
Q ss_pred cC---C-----------CEEEEEeCCCeEEEEEcCCCcEE--EEEeeecCCCCCcEEEEEeeCC---CeEEEEEeCCCcE
Q 003822 647 PD---D-----------HYLLVSAVDNEVRQLLAVDGRVH--LNFGITATGSSQNYTRSYYLNG---RDYIVSGSCDEHV 707 (793)
Q Consensus 647 pd---g-----------~~Lasgs~Dg~I~IwDl~tg~~~--~~l~~~~~~~~~v~s~afspdg---~~~L~Sgs~Dg~I 707 (793)
|- | +.|++|+.|+.|+||+..+++-. .++ ..|...+..++|.|.- +.+|+++|.||++
T Consensus 159 pa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l---~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~v 235 (299)
T KOG1332|consen 159 PASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTL---EGHKDWVRDVAWAPSVGLPKSTIASCSQDGTV 235 (299)
T ss_pred CcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhh---hhcchhhhhhhhccccCCCceeeEEecCCCcE
Confidence 85 4 56999999999999998887432 233 3577889999999853 4589999999999
Q ss_pred EEEEEcCCCcEEEeeeecCCCCCccceeeeccCCccccCCccEEEEEEcCCCCceeeEeeEEEeCCCcEEEEcCCCC
Q 003822 708 VRICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKSEIVKVNLLASTDHCDKECSHGQH 784 (793)
Q Consensus 708 I~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~~~~iv~~~ltaS~Dg~VkvW~~~~~ 784 (793)
.||-......-. - ...+..|...+..+.|++. .+.+. +++.|..|.+|.....
T Consensus 236 -iIwt~~~e~e~w--------------k----~tll~~f~~~~w~vSWS~s-Gn~La----Vs~GdNkvtlwke~~~ 288 (299)
T KOG1332|consen 236 -IIWTKDEEYEPW--------------K----KTLLEEFPDVVWRVSWSLS-GNILA----VSGGDNKVTLWKENVD 288 (299)
T ss_pred -EEEEecCccCcc--------------c----ccccccCCcceEEEEEecc-ccEEE----EecCCcEEEEEEeCCC
Confidence 999654111111 1 1222345668999999995 45555 6788999999987554
No 136
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=4.5e-17 Score=181.02 Aligned_cols=247 Identities=12% Similarity=0.127 Sum_probs=195.6
Q ss_pred CCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEE
Q 003822 498 MNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALY 577 (793)
Q Consensus 498 ~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IW 577 (793)
..+|++++|+ .+.+.||.+-.||.|.+|++...-.....+ .......|.+++|. .++.+++++.+|.|.-|
T Consensus 25 Ps~I~slA~s-~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi-------~g~~drsIE~L~W~-e~~RLFS~g~sg~i~Ew 95 (691)
T KOG2048|consen 25 PSEIVSLAYS-HKSNQLAVSRTDGNIEIWNLSNNWFLEPVI-------HGPEDRSIESLAWA-EGGRLFSSGLSGSITEW 95 (691)
T ss_pred ccceEEEEEe-ccCCceeeeccCCcEEEEccCCCceeeEEE-------ecCCCCceeeEEEc-cCCeEEeecCCceEEEE
Confidence 4689999998 667789999999999999999854322222 22233669999995 78999999999999999
Q ss_pred ECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEECCCCCccceEEccCC-CCeEEEEEecCCCEEEEEe
Q 003822 578 DINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSS-KGNVMVCFSPDDHYLLVSA 656 (793)
Q Consensus 578 Dl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~-~~~vsv~fSpdg~~Lasgs 656 (793)
|+.++++...+. ...+.|++++.+|.+ ..++.|+.||.+..++...+...-...+... ..+.++.|+|++..|++|+
T Consensus 96 Dl~~lk~~~~~d-~~gg~IWsiai~p~~-~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs 173 (691)
T KOG2048|consen 96 DLHTLKQKYNID-SNGGAIWSIAINPEN-TILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGS 173 (691)
T ss_pred ecccCceeEEec-CCCcceeEEEeCCcc-ceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecc
Confidence 999999999998 688999999999998 8999999999888888777654433344433 3556899999999999999
Q ss_pred CCCeEEEEEcCCCcEEEEEee-----ecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCCCCc
Q 003822 657 VDNEVRQLLAVDGRVHLNFGI-----TATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKGSGT 731 (793)
Q Consensus 657 ~Dg~I~IwDl~tg~~~~~l~~-----~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~~~~ 731 (793)
.||.|++||+.++..+..... ......-++++.|-.++ .|++|..-|+| .+||...|.+++ ..
T Consensus 174 ~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~--tI~sgDS~G~V-~FWd~~~gTLiq--S~------- 241 (691)
T KOG2048|consen 174 IDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS--TIASGDSAGTV-TFWDSIFGTLIQ--SH------- 241 (691)
T ss_pred cCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC--cEEEecCCceE-EEEcccCcchhh--hh-------
Confidence 999999999999987662221 11123457778888777 59999999999 999999999887 33
Q ss_pred cceeeeccCCccccCCccEEEEEEcCCCCceeeEeeEEEeCCCcEEEEcCCCC
Q 003822 732 SMFVQSLRGDPFRDFNMSILAAYTRPSSKSEIVKVNLLASTDHCDKECSHGQH 784 (793)
Q Consensus 732 s~~v~sl~g~~~~~h~~~V~sva~~P~~~~~iv~~~ltaS~Dg~VkvW~~~~~ 784 (793)
+.|+..|.+++-.+ ..+.++ +|+.|+.|-.+.....
T Consensus 242 ------------~~h~adVl~Lav~~-~~d~vf----saGvd~~ii~~~~~~~ 277 (691)
T KOG2048|consen 242 ------------SCHDADVLALAVAD-NEDRVF----SAGVDPKIIQYSLTTN 277 (691)
T ss_pred ------------hhhhcceeEEEEcC-CCCeEE----EccCCCceEEEEecCC
Confidence 34556799999998 456666 8999998877765444
No 137
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.78 E-value=5.1e-18 Score=188.02 Aligned_cols=246 Identities=15% Similarity=0.205 Sum_probs=198.0
Q ss_pred ccceEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCC--CCEEEEEEcCCcEEEEEcCC
Q 003822 453 SFRPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKY--PSKLIAGSDNGSLKLYDIRH 530 (793)
Q Consensus 453 ~~~V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~--g~~Lasgs~DgtV~vWDl~~ 530 (793)
++-+++++.+| +++.||+|..-|+++||++..-+....+. .|...|.++.|+.+. .++||+++.|+-|+|||+..
T Consensus 459 r~G~R~~~vSp-~gqhLAsGDr~GnlrVy~Lq~l~~~~~~e--AHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~r 535 (1080)
T KOG1408|consen 459 RFGFRALAVSP-DGQHLASGDRGGNLRVYDLQELEYTCFME--AHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKR 535 (1080)
T ss_pred ccceEEEEECC-CcceecccCccCceEEEEehhhhhhhhee--cccceeEEEeecCchhhhHhhhhccCCceEEEEeccc
Confidence 34489999999 99999999999999999998877776666 899999999998543 36899999999999999987
Q ss_pred CCCcccccccCCceeEecCCCCeEEEEEccCC--CEEEEEECCCcEEEEECCCCcEEEEEcc----cCCCCeEEEEEcCC
Q 003822 531 MPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMD--ELFLASGYSKNIALYDINSGRRLQVFAD----MHKEHINVVKFSNH 604 (793)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~--~~lla~g~Dg~I~IWDl~tg~~l~~~~~----gh~~~V~sv~fspd 604 (793)
.-..+..+. .|...|+++.|...+ ..++++|.|+.|.+--.+.......|.. .....++.++..|.
T Consensus 536 ny~l~qtld--------~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~ 607 (1080)
T KOG1408|consen 536 NYDLVQTLD--------GHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPT 607 (1080)
T ss_pred ccchhhhhc--------ccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCC
Confidence 554443333 344678999997776 6788899998876543332222222221 12357889999999
Q ss_pred CCcEEEEEeCCCeEEEEECCCCCccceEEcc-CC-CCeEEEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCC
Q 003822 605 SPSIFATSSFDQDVKLWDLRQKPIQPCYTAS-SS-KGNVMVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGS 682 (793)
Q Consensus 605 g~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~-~~-~~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~ 682 (793)
. +++++++.|+.|+|||+.+++....++.. ++ ...+.+...|.|-||++.+.|.++.++|..+|+++.+.. +|.
T Consensus 608 ~-k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~---GHs 683 (1080)
T KOG1408|consen 608 S-KLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMT---GHS 683 (1080)
T ss_pred c-ceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhc---Ccc
Confidence 8 89999999999999999999766555543 23 344569999999999999999999999999999988875 466
Q ss_pred CCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCC
Q 003822 683 SQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQT 715 (793)
Q Consensus 683 ~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~t 715 (793)
..++.+.|.+|.+ .|++.+.||.| .||.+..
T Consensus 684 E~VTG~kF~nDCk-HlISvsgDgCI-FvW~lp~ 714 (1080)
T KOG1408|consen 684 EAVTGVKFLNDCK-HLISVSGDGCI-FVWKLPL 714 (1080)
T ss_pred hheeeeeecccch-hheeecCCceE-EEEECch
Confidence 7788999999999 99999999999 9999865
No 138
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.78 E-value=2.5e-18 Score=184.37 Aligned_cols=237 Identities=13% Similarity=0.190 Sum_probs=194.9
Q ss_pred cceEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCC
Q 003822 454 FRPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPP 533 (793)
Q Consensus 454 ~~V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~ 533 (793)
-+++++..+| |++.|++|++-.++.|||+......-...+....-...+++.+ ++.+..+++..||.|.|||+.+...
T Consensus 466 nyiRSckL~p-dgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~s-pDakvcFsccsdGnI~vwDLhnq~~ 543 (705)
T KOG0639|consen 466 NYIRSCKLLP-DGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAIS-PDAKVCFSCCSDGNIAVWDLHNQTL 543 (705)
T ss_pred cceeeeEecC-CCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcC-CccceeeeeccCCcEEEEEccccee
Confidence 3589999999 9999999999999999999765543322222333467778876 7899999999999999999988543
Q ss_pred cccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEe
Q 003822 534 SIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSS 613 (793)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs 613 (793)
++.+. .|.+.+.||.+++++..+.+||-|++|+.||+++++.+.... ....|.++-++|.+ .+++.|-
T Consensus 544 -Vrqfq--------GhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhd--F~SQIfSLg~cP~~-dWlavGM 611 (705)
T KOG0639|consen 544 -VRQFQ--------GHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHD--FSSQIFSLGYCPTG-DWLAVGM 611 (705)
T ss_pred -eeccc--------CCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhh--hhhhheecccCCCc-cceeeec
Confidence 23322 345788999999999999999999999999999998887765 67889999999999 8999999
Q ss_pred CCCeEEEEECCCCCccceEEccCCCCeE-EEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEee
Q 003822 614 FDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYL 692 (793)
Q Consensus 614 ~Dg~IrIWDlrt~~~~~~~~l~~~~~~v-sv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afsp 692 (793)
..+.+.|-..... ..+.+.-|...+ ++.|++.|+++++.+.|+.+..|...-|..+...+ ..+.|.++..+.
T Consensus 612 ens~vevlh~skp---~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk----E~SsVlsCDIS~ 684 (705)
T KOG0639|consen 612 ENSNVEVLHTSKP---EKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK----ESSSVLSCDISF 684 (705)
T ss_pred ccCcEEEEecCCc---cceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeecc----ccCcceeeeecc
Confidence 9999988877654 234444555544 79999999999999999999999999998766553 567899999999
Q ss_pred CCCeEEEEEeCCCcEEEEEEc
Q 003822 693 NGRDYIVSGSCDEHVVRICCA 713 (793)
Q Consensus 693 dg~~~L~Sgs~Dg~II~IWDv 713 (793)
|++ ||+|||.|... .||.+
T Consensus 685 ddk-yIVTGSGdkkA-TVYeV 703 (705)
T KOG0639|consen 685 DDK-YIVTGSGDKKA-TVYEV 703 (705)
T ss_pred Cce-EEEecCCCcce-EEEEE
Confidence 999 99999999988 88865
No 139
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=8.1e-18 Score=180.13 Aligned_cols=228 Identities=13% Similarity=0.136 Sum_probs=182.2
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcc
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSI 535 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~ 535 (793)
|.|++-+| .|.+|+.|+..|.|++|.+.+|..+..+. +|-..|+++.|+ .++.+|+|||.||.|.+|.+..--...
T Consensus 84 v~al~s~n-~G~~l~ag~i~g~lYlWelssG~LL~v~~--aHYQ~ITcL~fs-~dgs~iiTgskDg~V~vW~l~~lv~a~ 159 (476)
T KOG0646|consen 84 VHALASSN-LGYFLLAGTISGNLYLWELSSGILLNVLS--AHYQSITCLKFS-DDGSHIITGSKDGAVLVWLLTDLVSAD 159 (476)
T ss_pred eeeeecCC-CceEEEeecccCcEEEEEeccccHHHHHH--hhccceeEEEEe-CCCcEEEecCCCccEEEEEEEeecccc
Confidence 78999999 99999999999999999999999988875 899999999998 899999999999999999986522211
Q ss_pred cccccCCceeEe-cCCCCeEEEEEccC--CCEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEE
Q 003822 536 RGMHYGAGTVTF-DEFDQLTSVHVNSM--DELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATS 612 (793)
Q Consensus 536 ~~~~~~~~~~~~-~~~~~V~sv~~s~~--~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTg 612 (793)
.... ......| .|.-+|+++...+. +.++++++.|.++++||+..|..+.++. ....+++++..|.+ ..+..|
T Consensus 160 ~~~~-~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~--fp~si~av~lDpae-~~~yiG 235 (476)
T KOG0646|consen 160 NDHS-VKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT--FPSSIKAVALDPAE-RVVYIG 235 (476)
T ss_pred cCCC-ccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe--cCCcceeEEEcccc-cEEEec
Confidence 1111 1112223 45567999887543 5789999999999999999999999987 77899999999998 899999
Q ss_pred eCCCeEEEEECCCCC--------------ccceEEccCCCC---eEEEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEE
Q 003822 613 SFDQDVKLWDLRQKP--------------IQPCYTASSSKG---NVMVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNF 675 (793)
Q Consensus 613 s~Dg~IrIWDlrt~~--------------~~~~~~l~~~~~---~vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l 675 (793)
+.+|.|.+.++.+.. ...+..+.+|.+ +.+++.+-||..|++|+.||.+.|||+.+.++++++
T Consensus 236 t~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl 315 (476)
T KOG0646|consen 236 TEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTL 315 (476)
T ss_pred CCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHH
Confidence 999999998876532 112233445555 446999999999999999999999999999988877
Q ss_pred eeecCCCCCcEEEEEeeCC
Q 003822 676 GITATGSSQNYTRSYYLNG 694 (793)
Q Consensus 676 ~~~~~~~~~v~s~afspdg 694 (793)
. ...+.|..+.+.|--
T Consensus 316 ~---~~kgpVtnL~i~~~~ 331 (476)
T KOG0646|consen 316 Q---TSKGPVTNLQINPLE 331 (476)
T ss_pred h---hhccccceeEeeccc
Confidence 4 134566677775543
No 140
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.78 E-value=7e-18 Score=172.21 Aligned_cols=247 Identities=16% Similarity=0.188 Sum_probs=190.9
Q ss_pred ceEEEEEeCCCCCEEEEEeCCCeEEEEEC------CC------------------------------Ce--EEEEEeccC
Q 003822 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNH------EN------------------------------EN--IVSYIPSFG 496 (793)
Q Consensus 455 ~V~~vafsP~d~~~Lasgs~DG~I~VWd~------~t------------------------------~~--~i~~l~~~~ 496 (793)
.|.+++||| .+.++++++.|++..||.. .. +. .+....+.+
T Consensus 192 SVNsikfh~-s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltg 270 (481)
T KOG0300|consen 192 SVNSIKFHN-SGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTG 270 (481)
T ss_pred ceeeEEecc-ccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeec
Confidence 399999999 8999999999999999962 10 00 111223458
Q ss_pred CCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEE
Q 003822 497 AMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIAL 576 (793)
Q Consensus 497 h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~I 576 (793)
|.+.|.+..|. ..|+.+++++.|.+..+||++++.. +..+. .|....+.++.+|....+++++.|.+.++
T Consensus 271 H~~vV~a~dWL-~gg~Q~vTaSWDRTAnlwDVEtge~-v~~Lt--------GHd~ELtHcstHptQrLVvTsSrDtTFRL 340 (481)
T KOG0300|consen 271 HRAVVSACDWL-AGGQQMVTASWDRTANLWDVETGEV-VNILT--------GHDSELTHCSTHPTQRLVVTSSRDTTFRL 340 (481)
T ss_pred cccceEehhhh-cCcceeeeeeccccceeeeeccCce-ecccc--------CcchhccccccCCcceEEEEeccCceeEe
Confidence 99999999998 7899999999999999999999875 22233 33356677788888888888899999999
Q ss_pred EECCCC-cEEEEEcccCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEECCCCCccceEEccCCCCeEEEEEecCCCEEEEE
Q 003822 577 YDINSG-RRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLVS 655 (793)
Q Consensus 577 WDl~tg-~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~~~~vsv~fSpdg~~Lasg 655 (793)
||.+.. ..+..|+ ||+..|+++.|..+. .+++|+.|.+|++||+++.. .++.++.....+..++.+..+..|+.-
T Consensus 341 WDFReaI~sV~VFQ-GHtdtVTS~vF~~dd--~vVSgSDDrTvKvWdLrNMR-splATIRtdS~~NRvavs~g~~iIAiP 416 (481)
T KOG0300|consen 341 WDFREAIQSVAVFQ-GHTDTVTSVVFNTDD--RVVSGSDDRTVKVWDLRNMR-SPLATIRTDSPANRVAVSKGHPIIAIP 416 (481)
T ss_pred ccchhhcceeeeec-ccccceeEEEEecCC--ceeecCCCceEEEeeecccc-CcceeeecCCccceeEeecCCceEEec
Confidence 999853 4567788 799999999999876 69999999999999999853 456666666666679999988999999
Q ss_pred eCCCeEEEEEcCCCcEEEEEe-eecCCCCCcEEEEEeeCCC-eEEEEEeCCCcEEEEEEcCCCc
Q 003822 656 AVDNEVRQLLAVDGRVHLNFG-ITATGSSQNYTRSYYLNGR-DYIVSGSCDEHVVRICCAQTGR 717 (793)
Q Consensus 656 s~Dg~I~IwDl~tg~~~~~l~-~~~~~~~~v~s~afspdg~-~~L~Sgs~Dg~II~IWDv~tg~ 717 (793)
-.+..|++||+...++.+.-. ....|...+.+++|..+-. .-|++++-|..+ .-|++.+..
T Consensus 417 hDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v-~gW~in~p~ 479 (481)
T KOG0300|consen 417 HDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMV-AGWKINTPT 479 (481)
T ss_pred cCCceEEEEecCCCccccCCcccccccceeeeeeeccccCccccccccccccee-eeeEecccC
Confidence 989999999987655432211 1234556677888864321 148899999999 899886543
No 141
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.78 E-value=1.7e-17 Score=173.43 Aligned_cols=235 Identities=17% Similarity=0.221 Sum_probs=174.2
Q ss_pred CCCEEEEEeCCCeEEEEECCC----------------CeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEc
Q 003822 465 ISCLMVFGTLDGEIVVVNHEN----------------ENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDI 528 (793)
Q Consensus 465 d~~~Lasgs~DG~I~VWd~~t----------------~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl 528 (793)
+..+.|+-+..|.|.||++.. .+++.++ .+|.+.-++++|+|.....|++|.--+.|++|..
T Consensus 164 ~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~--~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~ 241 (440)
T KOG0302|consen 164 NEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTF--NGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEP 241 (440)
T ss_pred CcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEe--cccCccceeeecccccccccccCccccceEeeee
Confidence 445777778899999999742 1233333 4888999999999766667899988899999999
Q ss_pred CCCCCcccccccCCceeEecCCCCeEEEEEccCCCEEE-EEECCCcEEEEECCCC---cEEEEEcccCCCCeEEEEEcCC
Q 003822 529 RHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFL-ASGYSKNIALYDINSG---RRLQVFADMHKEHINVVKFSNH 604 (793)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~ll-a~g~Dg~I~IWDl~tg---~~l~~~~~gh~~~V~sv~fspd 604 (793)
.++.-.+.. .....|...|-.+.|+|....++ +++.||+|+|||++.+ .++.+ + +|.+.|+.|.|+..
T Consensus 242 ~~g~W~vd~------~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~-k-Ah~sDVNVISWnr~ 313 (440)
T KOG0302|consen 242 STGSWKVDQ------RPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST-K-AHNSDVNVISWNRR 313 (440)
T ss_pred ccCceeecC------ccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe-e-ccCCceeeEEccCC
Confidence 886542211 11234668899999999875555 4557999999999987 23333 4 79999999999999
Q ss_pred CCcEEEEEeCCCeEEEEECCCCCc-cceEEccCCCCeE-EEEEecC-CCEEEEEeCCCeEEEEEcCCCcE----------
Q 003822 605 SPSIFATSSFDQDVKLWDLRQKPI-QPCYTASSSKGNV-MVCFSPD-DHYLLVSAVDNEVRQLLAVDGRV---------- 671 (793)
Q Consensus 605 g~~~LaTgs~Dg~IrIWDlrt~~~-~~~~~l~~~~~~v-sv~fSpd-g~~Lasgs~Dg~I~IwDl~tg~~---------- 671 (793)
-+ +||+|+.||+++|||+|+-+. .++..+..|..++ ++.|+|. ...|++++.|++|.+||+....-
T Consensus 314 ~~-lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~ 392 (440)
T KOG0302|consen 314 EP-LLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAE 392 (440)
T ss_pred cc-eeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhcccccc
Confidence 84 999999999999999997532 4666777777766 5999995 56778888899999999853211
Q ss_pred -----EEEEeeecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEE
Q 003822 672 -----HLNFGITATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICC 712 (793)
Q Consensus 672 -----~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWD 712 (793)
...+-+-+.+...+-.+.|++.-..++++.+.||- .||.
T Consensus 393 ~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGf--nVfk 436 (440)
T KOG0302|consen 393 GLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGF--NVFK 436 (440)
T ss_pred chhcCCceeEEEecchhHhhhheeccCCCCeEEEecccce--eEEE
Confidence 11122222345566678898877669999999984 4553
No 142
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.77 E-value=5.9e-16 Score=166.74 Aligned_cols=276 Identities=18% Similarity=0.182 Sum_probs=206.9
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEecc--CCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCC
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSF--GAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPP 533 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~--~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~ 533 (793)
|...+|||.+.+++++.+ .|.+..|+.+++......-.. .....|.+++|. ++| -++||..+|.|.||+..+.+.
T Consensus 203 v~~a~FHPtd~nliit~G-k~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~-eng-dviTgDS~G~i~Iw~~~~~~~ 279 (626)
T KOG2106|consen 203 VFLATFHPTDPNLIITCG-KGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFL-ENG-DVITGDSGGNILIWSKGTNRI 279 (626)
T ss_pred EEEEEeccCCCcEEEEeC-CceEEEEEccCCceEEEeeccccccceEEEEEEEc-CCC-CEEeecCCceEEEEeCCCceE
Confidence 778999998888888877 678999999988765433221 123689999997 455 578999999999999976543
Q ss_pred cccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCc-----------EEEEE--------------
Q 003822 534 SIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGR-----------RLQVF-------------- 588 (793)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~-----------~l~~~-------------- 588 (793)
. ...+.|.+.|.+++. -.++.+++|+.|..|..||-.-.+ .++++
T Consensus 280 ~---------k~~~aH~ggv~~L~~-lr~GtllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN 349 (626)
T KOG2106|consen 280 S---------KQVHAHDGGVFSLCM-LRDGTLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRN 349 (626)
T ss_pred E---------eEeeecCCceEEEEE-ecCccEeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccc
Confidence 2 112367788999988 467778888899999999833111 01110
Q ss_pred --------------cccCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEECCCCCccceEEccCCCCeEEEEEecCCCEEEE
Q 003822 589 --------------ADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLV 654 (793)
Q Consensus 589 --------------~~gh~~~V~sv~fspdg~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~~~~vsv~fSpdg~~Las 654 (793)
..+|......++.+|+. .+++|++.|+.+++|+ .. ++.++..-.....++.|+|.| .+|+
T Consensus 350 ~iL~Gt~~~~f~~~v~gh~delwgla~hps~-~q~~T~gqdk~v~lW~--~~--k~~wt~~~~d~~~~~~fhpsg-~va~ 423 (626)
T KOG2106|consen 350 FILQGTLENGFTLTVQGHGDELWGLATHPSK-NQLLTCGQDKHVRLWN--DH--KLEWTKIIEDPAECADFHPSG-VVAV 423 (626)
T ss_pred eEEEeeecCCceEEEEecccceeeEEcCCCh-hheeeccCcceEEEcc--CC--ceeEEEEecCceeEeeccCcc-eEEE
Confidence 12588888999999998 8999999999999999 22 455555555677789999999 9999
Q ss_pred EeCCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCCCCccce
Q 003822 655 SAVDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKGSGTSMF 734 (793)
Q Consensus 655 gs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~ 734 (793)
|+..|...+.|..+..++..- .. ..++..+.|+|+|. +||.|+.|+.| +||-+..+.... +..+.-
T Consensus 424 Gt~~G~w~V~d~e~~~lv~~~---~d-~~~ls~v~ysp~G~-~lAvgs~d~~i-yiy~Vs~~g~~y--~r~~k~------ 489 (626)
T KOG2106|consen 424 GTATGRWFVLDTETQDLVTIH---TD-NEQLSVVRYSPDGA-FLAVGSHDNHI-YIYRVSANGRKY--SRVGKC------ 489 (626)
T ss_pred eeccceEEEEecccceeEEEE---ec-CCceEEEEEcCCCC-EEEEecCCCeE-EEEEECCCCcEE--EEeeee------
Confidence 999999999999985554332 23 67888999999999 99999999999 999987665544 222211
Q ss_pred eeeccCCccccCCccEEEEEEcCCCCceeeEeeEEEeCCCcEEEEc
Q 003822 735 VQSLRGDPFRDFNMSILAAYTRPSSKSEIVKVNLLASTDHCDKECS 780 (793)
Q Consensus 735 v~sl~g~~~~~h~~~V~sva~~P~~~~~iv~~~ltaS~Dg~VkvW~ 780 (793)
. + .+|+.+.|++++ +.+. +-|.|-.+-.|.
T Consensus 490 ----~-----g--s~ithLDwS~Ds-~~~~----~~S~d~eiLyW~ 519 (626)
T KOG2106|consen 490 ----S-----G--SPITHLDWSSDS-QFLV----SNSGDYEILYWK 519 (626)
T ss_pred ----c-----C--ceeEEeeecCCC-ceEE----eccCceEEEEEc
Confidence 1 1 479999999963 3333 667888899993
No 143
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=1.1e-16 Score=163.74 Aligned_cols=272 Identities=13% Similarity=0.142 Sum_probs=182.4
Q ss_pred CCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcccccccCCceeEecCCCCeEEEEEccC--CCEEEEEECCCc
Q 003822 496 GAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSM--DELFLASGYSKN 573 (793)
Q Consensus 496 ~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~--~~~lla~g~Dg~ 573 (793)
+|.+-|.++.|. ..|+.+|+|+.|++|+|||.++......... .--.|.+.|..|.|.++ |+.+++++.|++
T Consensus 11 ~h~DlihdVs~D-~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts-----~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drt 84 (361)
T KOG2445|consen 11 GHKDLIHDVSFD-FYGRRMATCSSDQTVKIWDSTSDSGTWSCTS-----SWRAHDGSIWRVVWAHPEFGQVVATCSYDRT 84 (361)
T ss_pred CCcceeeeeeec-ccCceeeeccCCCcEEEEeccCCCCceEEee-----eEEecCCcEEEEEecCccccceEEEEecCCc
Confidence 788999999996 8999999999999999999866544322211 11245577999998765 456666678999
Q ss_pred EEEEECCC---------CcEEEEEcccCCCCeEEEEEcCCC-CcEEEEEeCCCeEEEEECCCCCccceEE----cc----
Q 003822 574 IALYDINS---------GRRLQVFADMHKEHINVVKFSNHS-PSIFATSSFDQDVKLWDLRQKPIQPCYT----AS---- 635 (793)
Q Consensus 574 I~IWDl~t---------g~~l~~~~~gh~~~V~sv~fspdg-~~~LaTgs~Dg~IrIWDlrt~~~~~~~~----l~---- 635 (793)
+.||.-.. -....++. ...+.|+.|.|.|.. +-.+|+++.||.+|||+.-........+ ++
T Consensus 85 v~iWEE~~~~~~~~~~~Wv~~ttl~-DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~ 163 (361)
T KOG2445|consen 85 VSIWEEQEKSEEAHGRRWVRRTTLV-DSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVID 163 (361)
T ss_pred eeeeeecccccccccceeEEEEEee-cCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccC
Confidence 99997521 12344555 377899999999853 2689999999999999876532111111 11
Q ss_pred ----CCCCeEEEEEecC---CCEEEEEeCC-----CeEEEEEcCCCc-EEEEEeeecCCCCCcEEEEEeeCCC---eEEE
Q 003822 636 ----SSKGNVMVCFSPD---DHYLLVSAVD-----NEVRQLLAVDGR-VHLNFGITATGSSQNYTRSYYLNGR---DYIV 699 (793)
Q Consensus 636 ----~~~~~vsv~fSpd---g~~Lasgs~D-----g~I~IwDl~tg~-~~~~l~~~~~~~~~v~s~afspdg~---~~L~ 699 (793)
.+....++.|+|. ..+||+|+.+ +.++||....+. ........+.+...+..++|.|+-+ ..||
T Consensus 164 pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lA 243 (361)
T KOG2445|consen 164 PPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLA 243 (361)
T ss_pred CcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEE
Confidence 2233446999974 5778888865 478888765432 3333333457888999999999643 3789
Q ss_pred EEeCCCcEEEEEEcCCCcE-EEeeeecCCCCCccceeeeccCCccccCCccEEEEEEcCCCCceeeEeeEEEeCCCcEEE
Q 003822 700 SGSCDEHVVRICCAQTGRR-LRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKSEIVKVNLLASTDHCDKE 778 (793)
Q Consensus 700 Sgs~Dg~II~IWDv~tg~~-l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~~~~iv~~~ltaS~Dg~Vkv 778 (793)
+++.|| | +||.+..... +..-............+..+ ..+.+|++.|..+.|+-. ...+. +.+.||+||+
T Consensus 244 vA~kDg-v-~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~v--s~~~~H~~~VWrv~wNmt-GtiLs----StGdDG~VRL 314 (361)
T KOG2445|consen 244 VATKDG-V-RIFKVKVARSAIEEEEVLAPDLMTDLPVEKV--SELDDHNGEVWRVRWNMT-GTILS----STGDDGCVRL 314 (361)
T ss_pred EeecCc-E-EEEEEeeccchhhhhcccCCCCccccceEEe--eeccCCCCceEEEEEeee-eeEEe----ecCCCceeee
Confidence 999999 8 9999975321 11000111111111122222 246789999999999985 23333 5678999999
Q ss_pred EcCCC
Q 003822 779 CSHGQ 783 (793)
Q Consensus 779 W~~~~ 783 (793)
|....
T Consensus 315 Wkany 319 (361)
T KOG2445|consen 315 WKANY 319 (361)
T ss_pred hhhhh
Confidence 98543
No 144
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=1.9e-18 Score=201.85 Aligned_cols=249 Identities=19% Similarity=0.265 Sum_probs=196.5
Q ss_pred eEEEEEeCCCCC---EEEEEeCCCeEEEEECCC---CeEEE-EEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEc
Q 003822 456 PRQFEYHPSISC---LMVFGTLDGEIVVVNHEN---ENIVS-YIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDI 528 (793)
Q Consensus 456 V~~vafsP~d~~---~Lasgs~DG~I~VWd~~t---~~~i~-~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl 528 (793)
-+.++|.+.... +||.|..||.|.+||... +.... ......|++.|..+.|++..+++||+|+.||.|.|||+
T Consensus 67 F~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDl 146 (1049)
T KOG0307|consen 67 FNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDL 146 (1049)
T ss_pred ceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEecc
Confidence 578999883333 599999999999999864 22211 11223799999999999888889999999999999999
Q ss_pred CCCCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEE-CCCcEEEEECCCCcEEEEEcccCCC--CeEEEEEcCCC
Q 003822 529 RHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASG-YSKNIALYDINSGRRLQVFADMHKE--HINVVKFSNHS 605 (793)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g-~Dg~I~IWDl~tg~~l~~~~~gh~~--~V~sv~fspdg 605 (793)
.+.+...... .....+.|.+++|+..-..+++++ .+|.+.|||++..+++-.+.. |.+ .+..++|||++
T Consensus 147 nn~~tP~~~~-------~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~-~~~~~~~S~l~WhP~~ 218 (1049)
T KOG0307|consen 147 NKPETPFTPG-------SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSD-TPGRMHCSVLAWHPDH 218 (1049)
T ss_pred CCcCCCCCCC-------CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCccccccc-CCCccceeeeeeCCCC
Confidence 9854422111 122347799999998877777776 578999999999988888874 433 47799999999
Q ss_pred CcEEEEEeCCC---eEEEEECCCCCccceEEccCC-CCeEEEEEecCC-CEEEEEeCCCeEEEEEcCCCcEEEEEeeecC
Q 003822 606 PSIFATSSFDQ---DVKLWDLRQKPIQPCYTASSS-KGNVMVCFSPDD-HYLLVSAVDNEVRQLLAVDGRVHLNFGITAT 680 (793)
Q Consensus 606 ~~~LaTgs~Dg---~IrIWDlrt~~~~~~~~l~~~-~~~vsv~fSpdg-~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~ 680 (793)
...+++++.|. .|.+||+|... .+...+.+| .+++++.|++.+ ++|++++.|+.|.+|+..+|+.+..+. .
T Consensus 219 aTql~~As~dd~~PviqlWDlR~as-sP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p---~ 294 (1049)
T KOG0307|consen 219 ATQLLVASGDDSAPVIQLWDLRFAS-SPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELP---A 294 (1049)
T ss_pred ceeeeeecCCCCCceeEeecccccC-CchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecC---C
Confidence 88888888764 49999999743 444555444 567789999966 889999999999999999999988874 4
Q ss_pred CCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCc
Q 003822 681 GSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGR 717 (793)
Q Consensus 681 ~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~ 717 (793)
.......+.|.|.....+++++-||.| .|+.+.++.
T Consensus 295 ~~nW~fdv~w~pr~P~~~A~asfdgkI-~I~sl~~~~ 330 (1049)
T KOG0307|consen 295 QGNWCFDVQWCPRNPSVMAAASFDGKI-SIYSLQGTD 330 (1049)
T ss_pred CCcceeeeeecCCCcchhhhheeccce-eeeeeecCC
Confidence 667888999999888789999999999 999887664
No 145
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.77 E-value=3.2e-17 Score=171.36 Aligned_cols=271 Identities=13% Similarity=0.153 Sum_probs=187.9
Q ss_pred cCCCCCEEEEEEeeC-CCCEEEEEEcCCcEEEEEcCCCCCccc------ccccCCceeEec-CCCCeEEEEEccCC-CEE
Q 003822 495 FGAMNSVLGLCWLKK-YPSKLIAGSDNGSLKLYDIRHMPPSIR------GMHYGAGTVTFD-EFDQLTSVHVNSMD-ELF 565 (793)
Q Consensus 495 ~~h~~~V~sv~fs~~-~g~~Lasgs~DgtV~vWDl~~~~~~~~------~~~~~~~~~~~~-~~~~V~sv~~s~~~-~~l 565 (793)
.+|.+.+..+.-.+. +..+.++-+..|.|+||++...-..+. ........+++. |...=++++|+|.. +.+
T Consensus 148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~L 227 (440)
T KOG0302|consen 148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRL 227 (440)
T ss_pred cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccccc
Confidence 367777777765432 334566667899999999875322111 111122333443 44567899998843 456
Q ss_pred EEEECCCcEEEEECCCCcEEE---EEcccCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEECCCCCccceEEccCCCCeEE
Q 003822 566 LASGYSKNIALYDINSGRRLQ---VFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVM 642 (793)
Q Consensus 566 la~g~Dg~I~IWDl~tg~~l~---~~~~gh~~~V~sv~fspdg~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~~~~vs 642 (793)
++|..-+.|++|...+|.-.. .|. +|+..|-.++|+|.....|++||.||+|+|||+|.++..+......|..-+.
T Consensus 228 lsGDc~~~I~lw~~~~g~W~vd~~Pf~-gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVN 306 (440)
T KOG0302|consen 228 LSGDCVKGIHLWEPSTGSWKVDQRPFT-GHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVN 306 (440)
T ss_pred ccCccccceEeeeeccCceeecCcccc-ccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCcee
Confidence 666667999999999876432 344 6999999999999888899999999999999999986555555566666664
Q ss_pred -EEEecCCCEEEEEeCCCeEEEEEcCC---CcEEEEEeeecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcE
Q 003822 643 -VCFSPDDHYLLVSAVDNEVRQLLAVD---GRVHLNFGITATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRR 718 (793)
Q Consensus 643 -v~fSpdg~~Lasgs~Dg~I~IwDl~t---g~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~ 718 (793)
+.|+.+-.+||+|+.||+++|||+++ ++++.+|+ .|...++++.|+|.....|+++|.|..| .+||+..-.-
T Consensus 307 VISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk---~Hk~pItsieW~p~e~s~iaasg~D~Qi-tiWDlsvE~D 382 (440)
T KOG0302|consen 307 VISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFK---YHKAPITSIEWHPHEDSVIAASGEDNQI-TIWDLSVEAD 382 (440)
T ss_pred eEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEE---eccCCeeEEEeccccCceEEeccCCCcE-EEEEeeccCC
Confidence 99999888999999999999999875 56677776 4777899999999877799999999999 9999864332
Q ss_pred EEeeeecCCCCCccceeeeccCCccccCCc--cEEEEEEcCCCCceeeEeeEEEeCCCcEEEEc
Q 003822 719 LRDISLEGKGSGTSMFVQSLRGDPFRDFNM--SILAAYTRPSSKSEIVKVNLLASTDHCDKECS 780 (793)
Q Consensus 719 l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~--~V~sva~~P~~~~~iv~~~ltaS~Dg~VkvW~ 780 (793)
.. ..... .....+.++..-+--|.+ .|--+.||+.-+..++ +.+-||- .||.
T Consensus 383 ~e--e~~~~---a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lv----sTa~dGf-nVfk 436 (440)
T KOG0302|consen 383 EE--EIDQE---AAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLV----STAIDGF-NVFK 436 (440)
T ss_pred hh--hhccc---cccchhcCCceeEEEecchhHhhhheeccCCCCeEE----Eecccce-eEEE
Confidence 11 00000 000111111111112322 5778999998777777 6666765 5554
No 146
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.77 E-value=7e-17 Score=165.86 Aligned_cols=285 Identities=16% Similarity=0.205 Sum_probs=203.2
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCC-------e-----EEEEEeccCCCCCEEEEEEee------CCCCEEEEE
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENE-------N-----IVSYIPSFGAMNSVLGLCWLK------KYPSKLIAG 517 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~-------~-----~i~~l~~~~h~~~V~sv~fs~------~~g~~Lasg 517 (793)
...+.|+| ||..|++-+.|..+.+|++... . ....++. .....|...+|.+ |+.+++++.
T Consensus 52 ~kgckWSP-DGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~-~eg~tvydy~wYs~M~s~qP~t~l~a~s 129 (406)
T KOG2919|consen 52 LKGCKWSP-DGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRY-QEGETVYDYCWYSRMKSDQPSTNLFAVS 129 (406)
T ss_pred hccceeCC-CCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEe-ccCCEEEEEEeeeccccCCCccceeeec
Confidence 34578999 9999999999999999997421 1 1112222 2245688888863 566799999
Q ss_pred EcCCcEEEEEcCCCCCcccccccCCceeEecCC---CCeEEEEEccCCCEEEEEECCCcEEEEEC-CCCcEEE---EEc-
Q 003822 518 SDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEF---DQLTSVHVNSMDELFLASGYSKNIALYDI-NSGRRLQ---VFA- 589 (793)
Q Consensus 518 s~DgtV~vWDl~~~~~~~~~~~~~~~~~~~~~~---~~V~sv~~s~~~~~lla~g~Dg~I~IWDl-~tg~~l~---~~~- 589 (793)
+.+.-|++||.-+++....- ..+.|. ....+++|+|++.++++ |....|+++|+ +.|+--. ++.
T Consensus 130 sr~~PIh~wdaftG~lraSy-------~~ydh~de~taAhsL~Fs~DGeqlfa-GykrcirvFdt~RpGr~c~vy~t~~~ 201 (406)
T KOG2919|consen 130 SRDQPIHLWDAFTGKLRASY-------RAYDHQDEYTAAHSLQFSPDGEQLFA-GYKRCIRVFDTSRPGRDCPVYTTVTK 201 (406)
T ss_pred cccCceeeeeccccccccch-------hhhhhHHhhhhheeEEecCCCCeEee-cccceEEEeeccCCCCCCcchhhhhc
Confidence 99999999999988752211 112222 34578999888777765 56789999999 5564221 111
Q ss_pred --ccCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEECCCCCccceEEccCCCCeEE-EEEecCCCEEEEEeC-CCeEEEEE
Q 003822 590 --DMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVM-VCFSPDDHYLLVSAV-DNEVRQLL 665 (793)
Q Consensus 590 --~gh~~~V~sv~fspdg~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~~~~vs-v~fSpdg~~Lasgs~-Dg~I~IwD 665 (793)
.+..+-+.+++|+|..+..++.|+...++-||.-... .+.+.+.+|.+-++ ++|.++|+.|++|+. |..|-.||
T Consensus 202 ~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~--~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WD 279 (406)
T KOG2919|consen 202 GKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGR--RPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWD 279 (406)
T ss_pred ccccccceeeeeeccCCCCcceeeecccceeeeEecCCC--CceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEe
Confidence 2357788999999998789999999999888876665 56677777776665 999999999999985 77899999
Q ss_pred cCCCc-EEEEEeeecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCC-CcEEEeeeecCCCCCccceeeeccCCcc
Q 003822 666 AVDGR-VHLNFGITATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQT-GRRLRDISLEGKGSGTSMFVQSLRGDPF 743 (793)
Q Consensus 666 l~tg~-~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~t-g~~l~~~~L~gh~~~~s~~v~sl~g~~~ 743 (793)
++..+ ++..+..+.....+-.-....|+|+ +|++|+.||.| ++||+++ |..+. . +
T Consensus 280 iR~~~~pv~~L~rhv~~TNQRI~FDld~~~~-~LasG~tdG~V-~vwdlk~~gn~~s--v-------------------~ 336 (406)
T KOG2919|consen 280 IRYSRDPVYALERHVGDTNQRILFDLDPKGE-ILASGDTDGSV-RVWDLKDLGNEVS--V-------------------T 336 (406)
T ss_pred ehhccchhhhhhhhccCccceEEEecCCCCc-eeeccCCCccE-EEEecCCCCCccc--c-------------------c
Confidence 98753 4444443322233333344567888 99999999999 9999987 55333 1 2
Q ss_pred ccCCccEEEEEEcCCCCceeeEeeEEEeCCCcEEEEcCCC
Q 003822 744 RDFNMSILAAYTRPSSKSEIVKVNLLASTDHCDKECSHGQ 783 (793)
Q Consensus 744 ~~h~~~V~sva~~P~~~~~iv~~~ltaS~Dg~VkvW~~~~ 783 (793)
..|...|++|++||. ..+.|++.|. |++..+.
T Consensus 337 ~~~sd~vNgvslnP~-------mpilatssGq-r~f~~~~ 368 (406)
T KOG2919|consen 337 GNYSDTVNGVSLNPI-------MPILATSSGQ-RIFKYPK 368 (406)
T ss_pred ccccccccceecCcc-------cceeeeccCc-eeecCCC
Confidence 234568999999996 5557777777 5665543
No 147
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.77 E-value=9.6e-17 Score=178.50 Aligned_cols=312 Identities=14% Similarity=0.123 Sum_probs=224.3
Q ss_pred cCceeeeeccCCCCCCCCcccceEEEEEeCCC--CCEEEEEeCCCeEEEEECCCCe---------------------EEE
Q 003822 434 WPCLHTLTVSGNHMGDENRSFRPRQFEYHPSI--SCLMVFGTLDGEIVVVNHENEN---------------------IVS 490 (793)
Q Consensus 434 ~p~~~~l~~~g~~~~~~~~~~~V~~vafsP~d--~~~Lasgs~DG~I~VWd~~t~~---------------------~i~ 490 (793)
..|.....+.||.+. |++++|.... .-+||+++.|..|+||.+.-+. ...
T Consensus 179 d~f~~v~el~GH~DW-------Irsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~ 251 (764)
T KOG1063|consen 179 DSFARVAELEGHTDW-------IRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILE 251 (764)
T ss_pred cceeEEEEeeccchh-------hhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeee
Confidence 355666777899886 7889998643 3588899999999999864211 010
Q ss_pred EEe--------ccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcccccccCCceeEecCCCCeEEEEEccCC
Q 003822 491 YIP--------SFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMD 562 (793)
Q Consensus 491 ~l~--------~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~ 562 (793)
.+. ..||.+.|.++.|+ +.+..|++++.|.++.+|...+..-........ +.+. .......+..|+|++
T Consensus 252 ~i~~~is~eall~GHeDWV~sv~W~-p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRl-Ge~g-g~a~GF~g~lw~~n~ 328 (764)
T KOG1063|consen 252 EIQYRISFEALLMGHEDWVYSVWWH-PEGLDLLSASADKSMIIWKPDENTGIWVDVVRL-GEVG-GSAGGFWGGLWSPNS 328 (764)
T ss_pred eEEEEEehhhhhcCcccceEEEEEc-cchhhheecccCcceEEEecCCccceEEEEEEe-eccc-ccccceeeEEEcCCC
Confidence 111 13999999999998 677789999999999999987754322211000 0000 112447888999999
Q ss_pred CEEEEEECCCcEEEEECCC-C--cEEEEEcccCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEECCCCC------------
Q 003822 563 ELFLASGYSKNIALYDINS-G--RRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKP------------ 627 (793)
Q Consensus 563 ~~lla~g~Dg~I~IWDl~t-g--~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~Dg~IrIWDlrt~~------------ 627 (793)
+.+++-|..|..++|-... . .....+ .||.+.|++|+|+|.| .+|++.+.|.+-|+|-.-..+
T Consensus 329 ~~ii~~g~~Gg~hlWkt~d~~~w~~~~~i-SGH~~~V~dv~W~psG-eflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiH 406 (764)
T KOG1063|consen 329 NVIIAHGRTGGFHLWKTKDKTFWTQEPVI-SGHVDGVKDVDWDPSG-EFLLSVSLDQTTRLFARWGRQQEWHEIARPQIH 406 (764)
T ss_pred CEEEEecccCcEEEEeccCccceeecccc-ccccccceeeeecCCC-CEEEEeccccceeeecccccccceeeecccccc
Confidence 9999999999999998322 1 122233 3899999999999999 799999999888886432000
Q ss_pred -----------------------ccceEE---------------------------------------------------
Q 003822 628 -----------------------IQPCYT--------------------------------------------------- 633 (793)
Q Consensus 628 -----------------------~~~~~~--------------------------------------------------- 633 (793)
...++.
T Consensus 407 GyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~ 486 (764)
T KOG1063|consen 407 GYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAA 486 (764)
T ss_pred cccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccc
Confidence 000000
Q ss_pred ----------------------------------ccCCCC-eEEEEEecCCCEEEEEeCCC-----eEEEEEcCCCcEEE
Q 003822 634 ----------------------------------ASSSKG-NVMVCFSPDDHYLLVSAVDN-----EVRQLLAVDGRVHL 673 (793)
Q Consensus 634 ----------------------------------l~~~~~-~vsv~fSpdg~~Lasgs~Dg-----~I~IwDl~tg~~~~ 673 (793)
+-||.. +.+++.+|+|+.+|+++... .|++|+..+.....
T Consensus 487 ~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~ 566 (764)
T KOG1063|consen 487 VCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQ 566 (764)
T ss_pred eeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhh
Confidence 112222 24689999999999988643 68999999888777
Q ss_pred EEeeecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCCCCccceeeeccCCccccCCccEEEE
Q 003822 674 NFGITATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAA 753 (793)
Q Consensus 674 ~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sv 753 (793)
.+. .|.-.+..++|+|||+ ||++.|.|.++ .+|....+.... .+....+.|...|.+.
T Consensus 567 ~L~---~HsLTVT~l~FSpdg~-~LLsvsRDRt~-sl~~~~~~~~~e-----------------~~fa~~k~HtRIIWdc 624 (764)
T KOG1063|consen 567 ELE---GHSLTVTRLAFSPDGR-YLLSVSRDRTV-SLYEVQEDIKDE-----------------FRFACLKAHTRIIWDC 624 (764)
T ss_pred eec---ccceEEEEEEECCCCc-EEEEeecCceE-Eeeeeecccchh-----------------hhhccccccceEEEEc
Confidence 665 4677899999999999 99999999999 999875443322 1122356788899999
Q ss_pred EEcCCCCceeeEeeEEEeCCCcEEEEcCCCC
Q 003822 754 YTRPSSKSEIVKVNLLASTDHCDKECSHGQH 784 (793)
Q Consensus 754 a~~P~~~~~iv~~~ltaS~Dg~VkvW~~~~~ 784 (793)
.|+|+... ++ |||.|.+|++|..+..
T Consensus 625 sW~pde~~-Fa----TaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 625 SWSPDEKY-FA----TASRDKKVKVWEEPDL 650 (764)
T ss_pred ccCcccce-eE----EecCCceEEEEeccCc
Confidence 99998644 55 9999999999998776
No 148
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.77 E-value=3.8e-17 Score=165.77 Aligned_cols=217 Identities=17% Similarity=0.225 Sum_probs=167.7
Q ss_pred CCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCc-cc-ccccCCceeE----ecCCCCeEEEEEccCC-CEEEEE
Q 003822 496 GAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS-IR-GMHYGAGTVT----FDEFDQLTSVHVNSMD-ELFLAS 568 (793)
Q Consensus 496 ~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~-~~-~~~~~~~~~~----~~~~~~V~sv~~s~~~-~~lla~ 568 (793)
.|.+.|.++..-+..|+++++|+.||.|.+||++..... .. ....+...+. -.|.-.|.++.|-|-+ +.|.++
T Consensus 41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtss 120 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSS 120 (397)
T ss_pred cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecc
Confidence 577889999887778999999999999999999874420 00 0111111111 1344568999998876 455556
Q ss_pred ECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCC--cEEEEEeCCCeEEEEECCCCCccceEEccCCCCeE-EEEE
Q 003822 569 GYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSP--SIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCF 645 (793)
Q Consensus 569 g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~--~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~~~~v-sv~f 645 (793)
+.|.++++||.++.+....|+ ..+.|++-+++|-.. -++|+|..|-.|++-|+.++ .....+.+|...+ ++.|
T Consensus 121 SFDhtlKVWDtnTlQ~a~~F~--me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SG--s~sH~LsGHr~~vlaV~W 196 (397)
T KOG4283|consen 121 SFDHTLKVWDTNTLQEAVDFK--MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASG--SFSHTLSGHRDGVLAVEW 196 (397)
T ss_pred cccceEEEeecccceeeEEee--cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCC--cceeeeccccCceEEEEe
Confidence 679999999999999999998 778999999998542 47888888999999999999 4556777887655 6999
Q ss_pred ecCCCE-EEEEeCCCeEEEEEcCCC-cEEEEEee-----------ecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEE
Q 003822 646 SPDDHY-LLVSAVDNEVRQLLAVDG-RVHLNFGI-----------TATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICC 712 (793)
Q Consensus 646 Spdg~~-Lasgs~Dg~I~IwDl~tg-~~~~~l~~-----------~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWD 712 (793)
+|...+ |++|+.||.|++||++.. .+...+.. ...+...+..++|..+|. ++++.+.|.++ ++|+
T Consensus 197 sp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~-~l~~~gtd~r~-r~wn 274 (397)
T KOG4283|consen 197 SPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDAR-YLASCGTDDRI-RVWN 274 (397)
T ss_pred ccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccch-hhhhccCccce-EEee
Confidence 998776 577889999999999764 33333332 334556788999999999 99999999999 9999
Q ss_pred cCCCcE
Q 003822 713 AQTGRR 718 (793)
Q Consensus 713 v~tg~~ 718 (793)
...|+-
T Consensus 275 ~~~G~n 280 (397)
T KOG4283|consen 275 MESGRN 280 (397)
T ss_pred cccCcc
Confidence 998864
No 149
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.76 E-value=9.4e-19 Score=194.98 Aligned_cols=228 Identities=20% Similarity=0.282 Sum_probs=188.3
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcc
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSI 535 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~ 535 (793)
|.++..-. ..+.+++|+.|-.+-+|.+.....+..+. +|..+|.++.|. ....+|++|+.+|+|++||++..+. +
T Consensus 31 v~~lk~~~-s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~--~hespIeSl~f~-~~E~LlaagsasgtiK~wDleeAk~-v 105 (825)
T KOG0267|consen 31 VGCLKIRK-SSRSLVTGGEDEKVNLWAIGKPNAITSLT--GHESPIESLTFD-TSERLLAAGSASGTIKVWDLEEAKI-V 105 (825)
T ss_pred hceeeeec-cceeeccCCCceeeccccccCCchhheee--ccCCcceeeecC-cchhhhcccccCCceeeeehhhhhh-h
Confidence 55555533 67899999999999999987766665544 999999999997 6778999999999999999997653 2
Q ss_pred cccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeCC
Q 003822 536 RGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFD 615 (793)
Q Consensus 536 ~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~D 615 (793)
+.+ +.|...+.++.|+|.+.+++.++.|+.+++||++...+.+.+. +|...|..+.|+|+| .+++.|+.|
T Consensus 106 rtL--------tgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~-s~~~vv~~l~lsP~G-r~v~~g~ed 175 (825)
T KOG0267|consen 106 RTL--------TGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYK-SHTRVVDVLRLSPDG-RWVASGGED 175 (825)
T ss_pred hhh--------hccccCcceeeeccceEEeccccccccceehhhhccCceeeec-CCcceeEEEeecCCC-ceeeccCCc
Confidence 222 3455778999999999999888889999999999999999999 599999999999999 899999999
Q ss_pred CeEEEEECCCCCccceEEccCCCCeE-EEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCC
Q 003822 616 QDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNG 694 (793)
Q Consensus 616 g~IrIWDlrt~~~~~~~~l~~~~~~v-sv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg 694 (793)
.+++|||+..++.. ..+.+|.+.+ ++.|+|..-.+++|+.|+++++||+.+-..+...+ .....+.+.+|.|++
T Consensus 176 ~tvki~d~~agk~~--~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~---~~~~~v~~~~fn~~~ 250 (825)
T KOG0267|consen 176 NTVKIWDLTAGKLS--KEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGK---PETDGVRSLAFNPDG 250 (825)
T ss_pred ceeeeecccccccc--cccccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccC---CccCCceeeeecCCc
Confidence 99999999988544 3445555554 58999999999999999999999999877665554 235678899999999
Q ss_pred CeEEEEEeCC
Q 003822 695 RDYIVSGSCD 704 (793)
Q Consensus 695 ~~~L~Sgs~D 704 (793)
. .+++|-.+
T Consensus 251 ~-~~~~G~q~ 259 (825)
T KOG0267|consen 251 K-IVLSGEQI 259 (825)
T ss_pred e-eeecCchh
Confidence 8 66666544
No 150
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.76 E-value=1.1e-17 Score=178.05 Aligned_cols=206 Identities=18% Similarity=0.249 Sum_probs=166.6
Q ss_pred ceEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCc
Q 003822 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS 534 (793)
Q Consensus 455 ~V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~ 534 (793)
+|..++|+....++||+|+.|.+|++||+.++++..++. .|.+.|.++.|+|..+..|++|+.|++|.+.|.+....
T Consensus 245 avl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~--~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~- 321 (463)
T KOG0270|consen 245 AVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSIT--HHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSN- 321 (463)
T ss_pred HHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehh--hcCCceeEEEecCCCceEEEeccccceEEeeeccCccc-
Confidence 377889998788999999999999999999999999887 78899999999988999999999999999999986222
Q ss_pred ccccccCCceeEecCCCCeEEEEEccCCCEE-EEEECCCcEEEEECCC-CcEEEEEcccCCCCeEEEEEcCCCCcEEEEE
Q 003822 535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELF-LASGYSKNIALYDINS-GRRLQVFADMHKEHINVVKFSNHSPSIFATS 612 (793)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~l-la~g~Dg~I~IWDl~t-g~~l~~~~~gh~~~V~sv~fspdg~~~LaTg 612 (793)
....+...+.|-.++|++..... +++..||+|+-+|+|. ++++.+++ +|.++|.++++++.-+.+++|+
T Consensus 322 --------s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~-AHd~~ISgl~~n~~~p~~l~t~ 392 (463)
T KOG0270|consen 322 --------SGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLK-AHDDEISGLSVNIQTPGLLSTA 392 (463)
T ss_pred --------cCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEE-eccCCcceEEecCCCCcceeec
Confidence 12345555789999999887654 4455789999999997 59999999 7999999999999999999999
Q ss_pred eCCCeEEEEECCCCCccceEEccCCCCeE-EEEEecCCC-EEEEEeCCCeEEEEEcCCCcEE
Q 003822 613 SFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDH-YLLVSAVDNEVRQLLAVDGRVH 672 (793)
Q Consensus 613 s~Dg~IrIWDlrt~~~~~~~~l~~~~~~v-sv~fSpdg~-~Lasgs~Dg~I~IwDl~tg~~~ 672 (793)
+.|+.|++|++.......+..-.-.-+.. +.++.|+-. +++.|+..+.++|||+.+...+
T Consensus 393 s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 393 STDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred cccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence 99999999999865443332211111222 466667544 4666777778999999887654
No 151
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.76 E-value=2e-16 Score=176.06 Aligned_cols=301 Identities=16% Similarity=0.208 Sum_probs=216.7
Q ss_pred cCCCCCCCCcccceEEEEEeCCCCCEEEEEeCCCeEEEEECCCC--eEEEEEec---cCCCCCEEEEEEeeCCCCEEEEE
Q 003822 443 SGNHMGDENRSFRPRQFEYHPSISCLMVFGTLDGEIVVVNHENE--NIVSYIPS---FGAMNSVLGLCWLKKYPSKLIAG 517 (793)
Q Consensus 443 ~g~~~~~~~~~~~V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~--~~i~~l~~---~~h~~~V~sv~fs~~~g~~Lasg 517 (793)
.||.+. |+++.|+| .+..|++++.|.++.+|...+. -.+..... .+..+..++..|+ ++++.+++-
T Consensus 264 ~GHeDW-------V~sv~W~p-~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~-~n~~~ii~~ 334 (764)
T KOG1063|consen 264 MGHEDW-------VYSVWWHP-EGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWS-PNSNVIIAH 334 (764)
T ss_pred cCcccc-------eEEEEEcc-chhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEc-CCCCEEEEe
Confidence 478886 89999999 8888999999999999987643 33333332 1344568889998 788999999
Q ss_pred EcCCcEEEEEcCCCCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCC---------------
Q 003822 518 SDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSG--------------- 582 (793)
Q Consensus 518 s~DgtV~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg--------------- 582 (793)
+.-|..++|..+.... .. .....-.|.+.|.+++|+|.+.+++++|.|-+-+++-.-..
T Consensus 335 g~~Gg~hlWkt~d~~~-w~-----~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGy 408 (764)
T KOG1063|consen 335 GRTGGFHLWKTKDKTF-WT-----QEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGY 408 (764)
T ss_pred cccCcEEEEeccCccc-ee-----eccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccc
Confidence 9999999999333211 11 01223356678888899888888888888877666532200
Q ss_pred --------------------cEEEEE------------------------------------------------------
Q 003822 583 --------------------RRLQVF------------------------------------------------------ 588 (793)
Q Consensus 583 --------------------~~l~~~------------------------------------------------------ 588 (793)
+.++.|
T Consensus 409 Dl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~ 488 (764)
T KOG1063|consen 409 DLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVC 488 (764)
T ss_pred cceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCccccccccccccee
Confidence 000000
Q ss_pred ---------------------------c-----ccCCCCeEEEEEcCCCCcEEEEEeCCC-----eEEEEECCCCCccce
Q 003822 589 ---------------------------A-----DMHKEHINVVKFSNHSPSIFATSSFDQ-----DVKLWDLRQKPIQPC 631 (793)
Q Consensus 589 ---------------------------~-----~gh~~~V~sv~fspdg~~~LaTgs~Dg-----~IrIWDlrt~~~~~~ 631 (793)
+ -||...|++++.+|++ +++||++... .|++|+..+. ...
T Consensus 489 ~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~g-nliASaCKS~~~ehAvI~lw~t~~W--~~~ 565 (764)
T KOG1063|consen 489 AETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTG-NLIASACKSSLKEHAVIRLWNTANW--LQV 565 (764)
T ss_pred eecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCC-CEEeehhhhCCccceEEEEEeccch--hhh
Confidence 0 1577789999999999 8999988754 4999998876 344
Q ss_pred EEccCCCCeE-EEEEecCCCEEEEEeCCCeEEEEEcCCCcE-EEEEeeecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEE
Q 003822 632 YTASSSKGNV-MVCFSPDDHYLLVSAVDNEVRQLLAVDGRV-HLNFGITATGSSQNYTRSYYLNGRDYIVSGSCDEHVVR 709 (793)
Q Consensus 632 ~~l~~~~~~v-sv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~-~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~ 709 (793)
..+.+|.-.+ .++|||||++|++.+.|.++.+|....... -..+.....|...++.+.|+|++. +++|+|.|.+| +
T Consensus 566 ~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~-~FaTaSRDK~V-k 643 (764)
T KOG1063|consen 566 QELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEK-YFATASRDKKV-K 643 (764)
T ss_pred heecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccc-eeEEecCCceE-E
Confidence 4667777555 599999999999999999999998754321 222333456778899999999999 89999999999 9
Q ss_pred EEEcCCC--cEEEeeeecCCCCCccceeeeccCCccccCCccEEEEEEcCCCCceeeEeeEEEeCCCcEEEEcCC
Q 003822 710 ICCAQTG--RRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKSEIVKVNLLASTDHCDKECSHG 782 (793)
Q Consensus 710 IWDv~tg--~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~~~~iv~~~ltaS~Dg~VkvW~~~ 782 (793)
||....+ +.+..+ ....|..+|++++++|-..+.-.+...+|-..|.|.+|+..
T Consensus 644 VW~~~~~~d~~i~~~-------------------a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~ 699 (764)
T KOG1063|consen 644 VWEEPDLRDKYISRF-------------------ACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRK 699 (764)
T ss_pred EEeccCchhhhhhhh-------------------chhccCCceeeEEeeccccccccceEEEEecccEEEEEecc
Confidence 9998877 444311 11235568999999876444211112278899999999954
No 152
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.76 E-value=3.5e-18 Score=199.58 Aligned_cols=291 Identities=18% Similarity=0.223 Sum_probs=209.4
Q ss_pred eEEEEEeCCCCCEEEEEe----------CCCeEEEEECCC--Ce----EEEEEeccCCCCCEEEEEEeeCCCC---EEEE
Q 003822 456 PRQFEYHPSISCLMVFGT----------LDGEIVVVNHEN--EN----IVSYIPSFGAMNSVLGLCWLKKYPS---KLIA 516 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs----------~DG~I~VWd~~t--~~----~i~~l~~~~h~~~V~sv~fs~~~g~---~Las 516 (793)
--.++|+|....++|+|+ .+.++-||.+.. .. .+..+ .-....+.++|.+.... .+|.
T Consensus 9 ta~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~---~s~~rF~kL~W~~~g~~~~GlIaG 85 (1049)
T KOG0307|consen 9 TATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSL---QSSNRFNKLAWGSYGSHSHGLIAG 85 (1049)
T ss_pred cceEEecCCCchhhHHHhhhhccccccccccccceeeecccCccccccccccc---cccccceeeeecccCCCccceeec
Confidence 345789994444666654 244556665432 22 22222 23457889999843333 5889
Q ss_pred EEcCCcEEEEEcCCC--CCcccccccCCceeEecCCCCeEEEEEccCCCE-EEEEECCCcEEEEECCCCcEEEEEc-ccC
Q 003822 517 GSDNGSLKLYDIRHM--PPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDEL-FLASGYSKNIALYDINSGRRLQVFA-DMH 592 (793)
Q Consensus 517 gs~DgtV~vWDl~~~--~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~-lla~g~Dg~I~IWDl~tg~~l~~~~-~gh 592 (793)
|..||.|.+||...- ......+ ...-.|.+.|..+.|++..+. +++|++||.|.|||+..-+...+.. ...
T Consensus 86 G~edG~I~ly~p~~~~~~~~~~~l-----a~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~ 160 (1049)
T KOG0307|consen 86 GLEDGNIVLYDPASIIANASEEVL-----ATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAP 160 (1049)
T ss_pred cccCCceEEecchhhccCcchHHH-----hhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCC
Confidence 999999999998763 1100000 112356789999999998884 5555578999999999865554442 125
Q ss_pred CCCeEEEEEcCCCCcEEEEEeCCCeEEEEECCCCCccceEEccCCCC---eEEEEEecCC-CEEEEEeCCC---eEEEEE
Q 003822 593 KEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKG---NVMVCFSPDD-HYLLVSAVDN---EVRQLL 665 (793)
Q Consensus 593 ~~~V~sv~fspdg~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~~~---~vsv~fSpdg-~~Lasgs~Dg---~I~IwD 665 (793)
.+.|.+++|+..-.++|++++.+|.+.|||+|.. .++..+..+.+ .-.++|+|++ ..|++++.|. .|.+||
T Consensus 161 ~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~--~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWD 238 (1049)
T KOG0307|consen 161 PSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKK--KPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWD 238 (1049)
T ss_pred cccceEeccchhhhHHhhccCCCCCceeccccCC--CcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeec
Confidence 6789999999887789999999999999999987 44555544433 2249999976 4566666554 689999
Q ss_pred cCCCc-EEEEEeeecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCCCCccceeeeccCCccc
Q 003822 666 AVDGR-VHLNFGITATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPFR 744 (793)
Q Consensus 666 l~tg~-~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~ 744 (793)
++... .++.+. .|...+.++.|++.+..+++|++.|++| .+|+.+||+.+. .+...+
T Consensus 239 lR~assP~k~~~---~H~~GilslsWc~~D~~lllSsgkD~~i-i~wN~~tgEvl~--~~p~~~---------------- 296 (1049)
T KOG0307|consen 239 LRFASSPLKILE---GHQRGILSLSWCPQDPRLLLSSGKDNRI-ICWNPNTGEVLG--ELPAQG---------------- 296 (1049)
T ss_pred ccccCCchhhhc---ccccceeeeccCCCCchhhhcccCCCCe-eEecCCCceEee--ecCCCC----------------
Confidence 87643 334443 5778899999999997799999999999 999999999998 444322
Q ss_pred cCCccEEEEEEcCCCCceeeEeeEEEeCCCcEEEEcCCCCC
Q 003822 745 DFNMSILAAYTRPSSKSEIVKVNLLASTDHCDKECSHGQHS 785 (793)
Q Consensus 745 ~h~~~V~sva~~P~~~~~iv~~~ltaS~Dg~VkvW~~~~~~ 785 (793)
..+..+.|.|..+..+. .+|-||.|-|+.+....
T Consensus 297 ---nW~fdv~w~pr~P~~~A----~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 297 ---NWCFDVQWCPRNPSVMA----AASFDGKISIYSLQGTD 330 (1049)
T ss_pred ---cceeeeeecCCCcchhh----hheeccceeeeeeecCC
Confidence 36888999998888888 89999999999876544
No 153
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.74 E-value=1.3e-16 Score=161.63 Aligned_cols=250 Identities=16% Similarity=0.182 Sum_probs=190.3
Q ss_pred eEEEEEeCCCCCEEEEEeCC-------CeEEEEECCCCe---------EEEEEeccCCCCCEEEEEEeeCCCCEEEEEEc
Q 003822 456 PRQFEYHPSISCLMVFGTLD-------GEIVVVNHENEN---------IVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSD 519 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~D-------G~I~VWd~~t~~---------~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~ 519 (793)
|+.++-+|.+..+|+++..+ ..+.||.+.... .+..+.. .+.+.|.|+.|. |++..+++-.
T Consensus 66 vw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldt-eavg~i~cvew~-Pns~klasm~- 142 (370)
T KOG1007|consen 66 VWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDT-EAVGKINCVEWE-PNSDKLASMD- 142 (370)
T ss_pred eehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCH-HHhCceeeEEEc-CCCCeeEEec-
Confidence 88999999888888887652 237899886421 2333332 345689999998 5888888776
Q ss_pred CCcEEEEEcCCCCCcccccccCCceeEecCCCCeEEEEEcc-CCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEE
Q 003822 520 NGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNS-MDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINV 598 (793)
Q Consensus 520 DgtV~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~-~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~s 598 (793)
|..|.+|++.........+.... ...+....++-+|+| .++..+++..|+++..||+++.+....+..+|...|..
T Consensus 143 dn~i~l~~l~ess~~vaev~ss~---s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI~dAHgq~vrd 219 (370)
T KOG1007|consen 143 DNNIVLWSLDESSKIVAEVLSSE---SAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSIEDAHGQRVRD 219 (370)
T ss_pred cCceEEEEcccCcchheeecccc---cccccceecccccCCCCccceEEEeCCCcEEEEEccchhhhcchhhhhcceeee
Confidence 78999999998765333222111 112344567778888 56777778889999999999999999998899999999
Q ss_pred EEEcCCCCcEEEEEeCCCeEEEEECCCCCccceEEccCCCCeE-EEEEecC-CCEEEEEeCCCeEEEEEcCCCc------
Q 003822 599 VKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPD-DHYLLVSAVDNEVRQLLAVDGR------ 670 (793)
Q Consensus 599 v~fspdg~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~~~~v-sv~fSpd-g~~Lasgs~Dg~I~IwDl~tg~------ 670 (793)
+.|+|+...+|+||+.||.|+|||.|..+ .++..+++|...+ ++.|.|. .+.|++|+.|..|.+|...+-.
T Consensus 220 lDfNpnkq~~lvt~gDdgyvriWD~R~tk-~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~ 298 (370)
T KOG1007|consen 220 LDFNPNKQHILVTCGDDGYVRIWDTRKTK-FPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIE 298 (370)
T ss_pred ccCCCCceEEEEEcCCCccEEEEeccCCC-ccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccc
Confidence 99999988899999999999999999854 6788999998887 6999995 5678899999999998754211
Q ss_pred ------------------EEE--EEeeecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEc
Q 003822 671 ------------------VHL--NFGITATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCA 713 (793)
Q Consensus 671 ------------------~~~--~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv 713 (793)
++. .+.....+...|+.++|+.-+...+++-|.||++ .|=.+
T Consensus 299 ~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRv-iIs~V 360 (370)
T KOG1007|consen 299 FEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRV-IISSV 360 (370)
T ss_pred cccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceE-EeecC
Confidence 000 0111235677899999999999889999999999 55444
No 154
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.74 E-value=6.5e-17 Score=173.47 Aligned_cols=262 Identities=15% Similarity=0.221 Sum_probs=192.3
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCC--eEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCC
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENE--NIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPP 533 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~--~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~ 533 (793)
+.++.|+..+.-.+++.+.|..+++|.-... +....-...+. .-.|++.. ....++++|+..+.|+|||++.. .
T Consensus 37 ~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd--~~~Cv~~~-s~S~y~~sgG~~~~Vkiwdl~~k-l 112 (673)
T KOG4378|consen 37 DFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGD--NAFCVACA-SQSLYEISGGQSGCVKIWDLRAK-L 112 (673)
T ss_pred ceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccc--hHHHHhhh-hcceeeeccCcCceeeehhhHHH-H
Confidence 6788998833223334456778999975432 22211111122 23333332 23478999999999999999843 2
Q ss_pred cccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEe
Q 003822 534 SIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSS 613 (793)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs 613 (793)
..+.+ -.|.+.|++|.++..+.++++++..|.|.|..+.++.....|..+....|+-+.|+|....+|.+++
T Consensus 113 ~hr~l--------kdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~as 184 (673)
T KOG4378|consen 113 IHRFL--------KDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIAS 184 (673)
T ss_pred Hhhhc--------cCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeec
Confidence 22222 2455789999999999999999999999999999999888888545567779999999878899999
Q ss_pred CCCeEEEEECCCCCccceEE-ccCCCCeEE-EEEecC-CCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEE
Q 003822 614 FDQDVKLWDLRQKPIQPCYT-ASSSKGNVM-VCFSPD-DHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSY 690 (793)
Q Consensus 614 ~Dg~IrIWDlrt~~~~~~~~-l~~~~~~vs-v~fSpd-g~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~af 690 (793)
.+|.|.+||+.... +.+. ...|..+.+ ++|+|. ...|++.+.|..|.+||....+....+. -.....+++|
T Consensus 185 d~G~VtlwDv~g~s--p~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~----y~~Plstvaf 258 (673)
T KOG4378|consen 185 DKGAVTLWDVQGMS--PIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT----YSHPLSTVAF 258 (673)
T ss_pred cCCeEEEEeccCCC--cccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceee----ecCCcceeee
Confidence 99999999998763 3333 345566655 999995 5667888999999999999877766664 3446778999
Q ss_pred eeCCCeEEEEEeCCCcEEEEEEcCCC-cEEEeeeecCCCCCccceeeeccCCccccCCccEEEEEEcCC
Q 003822 691 YLNGRDYIVSGSCDEHVVRICCAQTG-RRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPS 758 (793)
Q Consensus 691 spdg~~~L~Sgs~Dg~II~IWDv~tg-~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~ 758 (793)
.++|. +|++|+..|.+ ..||++.. .++. ++.. |...|.+++|.|.
T Consensus 259 ~~~G~-~L~aG~s~G~~-i~YD~R~~k~Pv~--v~sa-------------------h~~sVt~vafq~s 304 (673)
T KOG4378|consen 259 SECGT-YLCAGNSKGEL-IAYDMRSTKAPVA--VRSA-------------------HDASVTRVAFQPS 304 (673)
T ss_pred cCCce-EEEeecCCceE-EEEecccCCCCce--Eeee-------------------cccceeEEEeeec
Confidence 99999 99999999999 99999754 3444 4444 3456888999883
No 155
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.73 E-value=6.1e-16 Score=178.22 Aligned_cols=306 Identities=14% Similarity=0.116 Sum_probs=211.7
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEecc-CCCCCEEEEEEeeC-CCCEEEEEEcCCcEEEEEcCCCC-
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSF-GAMNSVLGLCWLKK-YPSKLIAGSDNGSLKLYDIRHMP- 532 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~-~h~~~V~sv~fs~~-~g~~Lasgs~DgtV~vWDl~~~~- 532 (793)
+..+.||| -...++++...-.|+|||.+.++....+... .....|+.+.+... +..++++|+.||.|+||+-....
T Consensus 1067 pk~~~~hp-f~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~ 1145 (1387)
T KOG1517|consen 1067 PKTLKFHP-FEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKW 1145 (1387)
T ss_pred CceeeecC-CCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccccc
Confidence 67789999 6677888887788999999999887766532 13457889988632 34589999999999999854332
Q ss_pred C---cccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEE
Q 003822 533 P---SIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIF 609 (793)
Q Consensus 533 ~---~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~L 609 (793)
. .+....+-.+.... ..+.=.-++|....++++++|.-..|+|||....+.+..+..+....|+++.-+-.+++.+
T Consensus 1146 ~~~eLVTaw~~Ls~~~~~-~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i 1224 (1387)
T KOG1517|consen 1146 KKPELVTAWSSLSDQLPG-ARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNII 1224 (1387)
T ss_pred CCceeEEeeccccccCcc-CCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceE
Confidence 1 11111111111111 1111144678888999999999999999999999988888766677788887665555899
Q ss_pred EEEeCCCeEEEEECCCCCcc-ceEEccCCCC---eEEEEEecCCCE-EEEEeCCCeEEEEEcCCCcEEEEEeeecCC--C
Q 003822 610 ATSSFDQDVKLWDLRQKPIQ-PCYTASSSKG---NVMVCFSPDDHY-LLVSAVDNEVRQLLAVDGRVHLNFGITATG--S 682 (793)
Q Consensus 610 aTgs~Dg~IrIWDlrt~~~~-~~~~l~~~~~---~vsv~fSpdg~~-Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~--~ 682 (793)
++|..||.|++||.|..... .+.....|.. ++.+.+.+.|-- |++|+.||.|++||++.......+.+...- +
T Consensus 1225 ~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yG 1304 (1387)
T KOG1517|consen 1225 AAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYG 1304 (1387)
T ss_pred EEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccC
Confidence 99999999999999986432 2333333333 456888886654 999999999999999985332223222111 2
Q ss_pred CCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCCCCccceeeeccCCccccCCccEEEEEEcCCCCce
Q 003822 683 SQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKSE 762 (793)
Q Consensus 683 ~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~~~~ 762 (793)
+..+.+..++... .+|+|+. +.| +||++. |+.+. .++-+. ..-+ ...+++.+++||| ..-.
T Consensus 1305 s~lTal~VH~hap-iiAsGs~-q~i-kIy~~~-G~~l~--~~k~n~--------~F~~----q~~gs~scL~FHP-~~~l 1365 (1387)
T KOG1517|consen 1305 SALTALTVHEHAP-IIASGSA-QLI-KIYSLS-GEQLN--IIKYNP--------GFMG----QRIGSVSCLAFHP-HRLL 1365 (1387)
T ss_pred ccceeeeeccCCC-eeeecCc-ceE-EEEecC-hhhhc--ccccCc--------cccc----CcCCCcceeeecc-hhHh
Confidence 2466777788877 8999988 788 999874 55555 333221 0111 1123679999999 4555
Q ss_pred eeEeeEEEeCCCcEEEEcCCCCCC
Q 003822 763 IVKVNLLASTDHCDKECSHGQHSR 786 (793)
Q Consensus 763 iv~~~ltaS~Dg~VkvW~~~~~~~ 786 (793)
++ .|+.|.+|.|+..++...
T Consensus 1366 lA----aG~~Ds~V~iYs~~k~~~ 1385 (1387)
T KOG1517|consen 1366 LA----AGSADSTVSIYSCEKPRL 1385 (1387)
T ss_pred hh----hccCCceEEEeecCCcCC
Confidence 55 678999999999876653
No 156
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=9.8e-16 Score=175.38 Aligned_cols=246 Identities=15% Similarity=0.159 Sum_probs=194.8
Q ss_pred CCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcccccccCCceeEec-CCCCeEEEEEccCCCEEEEEECCCcE
Q 003822 496 GAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFD-EFDQLTSVHVNSMDELFLASGYSKNI 574 (793)
Q Consensus 496 ~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~~~~~~~~~~~~~~-~~~~V~sv~~s~~~~~lla~g~Dg~I 574 (793)
.|+..-+.|+|- ++|+++++++.||.|++|+......... +.. +...|.+++. ..++|++++.+++|
T Consensus 11 aht~G~t~i~~d-~~gefi~tcgsdg~ir~~~~~sd~e~P~---------ti~~~g~~v~~ia~--~s~~f~~~s~~~tv 78 (933)
T KOG1274|consen 11 AHTGGLTLICYD-PDGEFICTCGSDGDIRKWKTNSDEEEPE---------TIDISGELVSSIAC--YSNHFLTGSEQNTV 78 (933)
T ss_pred hccCceEEEEEc-CCCCEEEEecCCCceEEeecCCcccCCc---------hhhccCceeEEEee--cccceEEeeccceE
Confidence 788899999996 7899999999999999999877521111 111 3456777776 56699999999999
Q ss_pred EEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEECCCCCccceEEccCCCCeE-EEEEecCCCEEE
Q 003822 575 ALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLL 653 (793)
Q Consensus 575 ~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~~~~v-sv~fSpdg~~La 653 (793)
.+|.+.+++.-..+. ..+-++++++|+.+| .++|.||.|-.|++-++... .....+.+|.+.+ ++.|+|.+.+||
T Consensus 79 ~~y~fps~~~~~iL~-Rftlp~r~~~v~g~g-~~iaagsdD~~vK~~~~~D~--s~~~~lrgh~apVl~l~~~p~~~fLA 154 (933)
T KOG1274|consen 79 LRYKFPSGEEDTILA-RFTLPIRDLAVSGSG-KMIAAGSDDTAVKLLNLDDS--SQEKVLRGHDAPVLQLSYDPKGNFLA 154 (933)
T ss_pred EEeeCCCCCccceee-eeeccceEEEEecCC-cEEEeecCceeEEEEecccc--chheeecccCCceeeeeEcCCCCEEE
Confidence 999999887654444 256789999999998 89999999999999999886 4456667888777 599999999999
Q ss_pred EEeCCCeEEEEEcCCCcEEEEEeeecCC-----CCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCC
Q 003822 654 VSAVDNEVRQLLAVDGRVHLNFGITATG-----SSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKG 728 (793)
Q Consensus 654 sgs~Dg~I~IwDl~tg~~~~~l~~~~~~-----~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~ 728 (793)
+.+.||.|++||+.++.+..++...... ......++|+|+|+ .++..+.|+.| ++|+..+++... .|.+..
T Consensus 155 vss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g-~la~~~~d~~V-kvy~r~~we~~f--~Lr~~~ 230 (933)
T KOG1274|consen 155 VSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGG-TLAVPPVDNTV-KVYSRKGWELQF--KLRDKL 230 (933)
T ss_pred EEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCC-eEEeeccCCeE-EEEccCCceehe--eecccc
Confidence 9999999999999999887766543222 23456789999988 77777889999 999999999988 555443
Q ss_pred CCccceeeeccCCccccCCccEEEEEEcCCCCceeeEeeEEEeCCCcEEEEcCCC
Q 003822 729 SGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKSEIVKVNLLASTDHCDKECSHGQ 783 (793)
Q Consensus 729 ~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~~~~iv~~~ltaS~Dg~VkvW~~~~ 783 (793)
+...+..++|+|.+ .-|+ .++-||.|-||+.+.
T Consensus 231 -----------------~ss~~~~~~wsPnG-~YiA----As~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 231 -----------------SSSKFSDLQWSPNG-KYIA----ASTLDGQILVWNVDT 263 (933)
T ss_pred -----------------cccceEEEEEcCCC-cEEe----eeccCCcEEEEeccc
Confidence 12348889999973 3333 566799999999984
No 157
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.72 E-value=4.9e-16 Score=163.30 Aligned_cols=253 Identities=12% Similarity=0.200 Sum_probs=180.5
Q ss_pred eEEEEEeC----CCCCEEEEE---eCCCeEEEEECC-CCeEEEEEe-ccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEE
Q 003822 456 PRQFEYHP----SISCLMVFG---TLDGEIVVVNHE-NENIVSYIP-SFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLY 526 (793)
Q Consensus 456 V~~vafsP----~d~~~Lasg---s~DG~I~VWd~~-t~~~i~~l~-~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vW 526 (793)
|+.++|.. .+++++|.- +..|-..|.-+. +|+.-...+ ..||+++|..++|.|.+.+.+|+||.|.+|.||
T Consensus 30 Vs~~tWDS~fcavNPkfiAvi~easgGgaf~ViPl~k~Gr~d~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW 109 (472)
T KOG0303|consen 30 VSRVTWDSSFCAVNPKFVAVIIEASGGGAFLVIPLVKTGRMDASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVW 109 (472)
T ss_pred eeeeeccccccccCCceEEEEEecCCCcceeecccccccccCCCCCCccCccccccccccCccCCceeecCCCCceEEEE
Confidence 55555543 244666542 223344444332 343322222 248999999999999999999999999999999
Q ss_pred EcCCCCCcccccccCCceeEecCCCCeEEEEEccCCC-EEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCC
Q 003822 527 DIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDE-LFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHS 605 (793)
Q Consensus 527 Dl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~-~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg 605 (793)
.+-.+..... +. ..-.....|...|.-|.|||... .++++|.|.+|.+||+.+|+.+.++. |.+.|+++.|+.+|
T Consensus 110 ~IPe~~l~~~-lt-epvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~--hpd~i~S~sfn~dG 185 (472)
T KOG0303|consen 110 QIPENGLTRD-LT-EPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD--HPDMVYSMSFNRDG 185 (472)
T ss_pred ECCCcccccC-cc-cceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecC--CCCeEEEEEeccCC
Confidence 9977543211 11 11122345667899999999864 56666789999999999999999987 99999999999999
Q ss_pred CcEEEEEeCCCeEEEEECCCCCccceEEccCCCCe--EEEEEecCCCEEEEEe---CCCeEEEEEcCCCcEEEEEeeecC
Q 003822 606 PSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGN--VMVCFSPDDHYLLVSA---VDNEVRQLLAVDGRVHLNFGITAT 680 (793)
Q Consensus 606 ~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~~~~--vsv~fSpdg~~Lasgs---~Dg~I~IwDl~tg~~~~~l~~~~~ 680 (793)
.+|+|.+.|..|||||.|+++... ...+|.+. ..+.|-.+|..+-+|- .+..+.+||..+-.....+. ...
T Consensus 186 -s~l~TtckDKkvRv~dpr~~~~v~--e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~-elD 261 (472)
T KOG0303|consen 186 -SLLCTTCKDKKVRVIDPRRGTVVS--EGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQ-ELD 261 (472)
T ss_pred -ceeeeecccceeEEEcCCCCcEee--ecccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeE-Eec
Confidence 899999999999999999985443 33455544 3588999999544443 46789999976643222121 113
Q ss_pred CCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCc
Q 003822 681 GSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGR 717 (793)
Q Consensus 681 ~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~ 717 (793)
.+..+.---|.+|.....++|-.|+.| |-|.+....
T Consensus 262 tSnGvl~PFyD~dt~ivYl~GKGD~~I-RYyEit~d~ 297 (472)
T KOG0303|consen 262 TSNGVLLPFYDPDTSIVYLCGKGDSSI-RYFEITNEP 297 (472)
T ss_pred cCCceEEeeecCCCCEEEEEecCCcce-EEEEecCCC
Confidence 455666677888888667788899999 999987765
No 158
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.72 E-value=4.3e-14 Score=154.03 Aligned_cols=286 Identities=23% Similarity=0.315 Sum_probs=211.0
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCe-EEEEEeccCCC-CCEEEEEE-eeCCCC-EEEEEEc-CCcEEEEEcCC
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENEN-IVSYIPSFGAM-NSVLGLCW-LKKYPS-KLIAGSD-NGSLKLYDIRH 530 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~-~i~~l~~~~h~-~~V~sv~f-s~~~g~-~Lasgs~-DgtV~vWDl~~ 530 (793)
+.++.+.+ .+..++.++.|+.+.+|+...+. ....+. ++. ..+..+.+ . +++. .++..+. |+.+.+|+...
T Consensus 68 i~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~~~~~~~~~ 143 (466)
T COG2319 68 ITSIAFSP-DGELLLSGSSDGTIKLWDLDNGEKLIKSLE--GLHDSSVSKLALSS-PDGNSILLASSSLDGTVKLWDLST 143 (466)
T ss_pred EEEEEECC-CCcEEEEecCCCcEEEEEcCCCceeEEEEe--ccCCCceeeEEEEC-CCcceEEeccCCCCccEEEEEecC
Confidence 88999999 88899999999999999998876 555554 322 36777776 4 4555 5555444 99999999987
Q ss_pred -CCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEEC-CCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcE
Q 003822 531 -MPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY-SKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSI 608 (793)
Q Consensus 531 -~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~-Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~ 608 (793)
... ......|...|..++|++.+..+++++. ++.+++|++..+..+..+. +|...|.+++|+|+++..
T Consensus 144 ~~~~---------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~ 213 (466)
T COG2319 144 PGKL---------IRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLA-GHTDPVSSLAFSPDGGLL 213 (466)
T ss_pred CCeE---------EEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeec-cCCCceEEEEEcCCcceE
Confidence 221 1223445577889999999988888875 9999999999999999998 599999999999998435
Q ss_pred EEEEeCCCeEEEEECCCCCccceEEccCCCCeEEE-EEecCCCEEEEEeCCCeEEEEEcCCCcE-EEEEeeecCCCCCcE
Q 003822 609 FATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMV-CFSPDDHYLLVSAVDNEVRQLLAVDGRV-HLNFGITATGSSQNY 686 (793)
Q Consensus 609 LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~~~~vsv-~fSpdg~~Lasgs~Dg~I~IwDl~tg~~-~~~l~~~~~~~~~v~ 686 (793)
+++++.|+.|++||.+.+..... .+.+|.... + .|+|++..+++++.|+.+++|+...... ...+ ..+...+.
T Consensus 214 ~~~~~~d~~i~~wd~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~---~~~~~~v~ 288 (466)
T COG2319 214 IASGSSDGTIRLWDLSTGKLLRS-TLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTL---SGHSSSVL 288 (466)
T ss_pred EEEecCCCcEEEEECCCCcEEee-ecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEE---ecCCccEE
Confidence 66669999999999885532221 455555543 3 7999999999999999999999987665 3333 23467788
Q ss_pred EEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCCCCccceeeeccCCccccCCccEEEEEEcCCCCceeeEe
Q 003822 687 TRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKSEIVKV 766 (793)
Q Consensus 687 s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~~~~iv~~ 766 (793)
.+.|.|++. .+++++.|+.+ ++|+..++.... ... ...|...|..+.+ +.....+.
T Consensus 289 ~~~~~~~~~-~~~~~~~d~~~-~~~~~~~~~~~~--~~~-----------------~~~~~~~~~~~~~-~~~~~~~~-- 344 (466)
T COG2319 289 SVAFSPDGK-LLASGSSDGTV-RLWDLETGKLLS--SLT-----------------LKGHEGPVSSLSF-SPDGSLLV-- 344 (466)
T ss_pred EEEECCCCC-EEEEeeCCCcE-EEEEcCCCceEE--Eee-----------------ecccCCceEEEEE-CCCCCEEE--
Confidence 889999777 67779889887 999999888776 332 1122335778888 42212333
Q ss_pred eEEEeCCCcEEEEcCCCCC
Q 003822 767 NLLASTDHCDKECSHGQHS 785 (793)
Q Consensus 767 ~ltaS~Dg~VkvW~~~~~~ 785 (793)
..+..|+.+++|......
T Consensus 345 -~~~~~d~~~~~~~~~~~~ 362 (466)
T COG2319 345 -SGGSDDGTIRLWDLRTGK 362 (466)
T ss_pred -EeecCCCcEEeeecCCCc
Confidence 122677899999887654
No 159
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.72 E-value=8.6e-16 Score=155.99 Aligned_cols=285 Identities=17% Similarity=0.206 Sum_probs=197.2
Q ss_pred eEEEEEe--CCCCCEEEEEeC----CCeEEEEEC--CCCeEEEEEeccCCCCCEEEEEEeeCC----CCEEEEEEcCCcE
Q 003822 456 PRQFEYH--PSISCLMVFGTL----DGEIVVVNH--ENENIVSYIPSFGAMNSVLGLCWLKKY----PSKLIAGSDNGSL 523 (793)
Q Consensus 456 V~~vafs--P~d~~~Lasgs~----DG~I~VWd~--~t~~~i~~l~~~~h~~~V~sv~fs~~~----g~~Lasgs~DgtV 523 (793)
++++.|+ |....+||.|+. .+.|.|..+ ++++.+..-. ..|.-+++.+.|.|.. +++|||++. .+
T Consensus 47 lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~-fd~~YP~tK~~wiPd~~g~~pdlLATs~D--~L 123 (364)
T KOG0290|consen 47 LYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDAN-FDHPYPVTKLMWIPDSKGVYPDLLATSSD--FL 123 (364)
T ss_pred eeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCC-CCCCCCccceEecCCccccCcchhhcccC--eE
Confidence 6778887 335568888884 455666544 4455544433 4799999999998543 246666653 79
Q ss_pred EEEEcCCCCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEE-CCCcEEEEECCCCcE---EEEEcccCCCCeEEE
Q 003822 524 KLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASG-YSKNIALYDINSGRR---LQVFADMHKEHINVV 599 (793)
Q Consensus 524 ~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g-~Dg~I~IWDl~tg~~---l~~~~~gh~~~V~sv 599 (793)
++|.+......+...........-.+..++++..|+.-+..++.++ -|.+..|||++++.. ...+- +|...|..|
T Consensus 124 RlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLI-AHDKEV~DI 202 (364)
T KOG0290|consen 124 RLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLI-AHDKEVYDI 202 (364)
T ss_pred EEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEE-ecCcceeEE
Confidence 9999985433222111111112334457899999998776666555 599999999999743 33444 699999999
Q ss_pred EEcCCCCcEEEEEeCCCeEEEEECCCCCccc-eEEccC-CCCeEEEEEec-CCCEEEEEeC-CCeEEEEEcCCC-cEEEE
Q 003822 600 KFSNHSPSIFATSSFDQDVKLWDLRQKPIQP-CYTASS-SKGNVMVCFSP-DDHYLLVSAV-DNEVRQLLAVDG-RVHLN 674 (793)
Q Consensus 600 ~fspdg~~~LaTgs~Dg~IrIWDlrt~~~~~-~~~l~~-~~~~vsv~fSp-dg~~Lasgs~-Dg~I~IwDl~tg-~~~~~ 674 (793)
+|...+..+||+.+.||.||+||+|...... ++.-+. +.....++|++ |-+++|+-.. ...|.|.|++.. ..+.+
T Consensus 203 af~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~ 282 (364)
T KOG0290|consen 203 AFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVAR 282 (364)
T ss_pred EeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceeh
Confidence 9999888899999999999999999864333 333333 34455789987 4567777554 467999999864 44555
Q ss_pred EeeecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCCCCccceeeeccCCccccCCccEEEEE
Q 003822 675 FGITATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAY 754 (793)
Q Consensus 675 l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva 754 (793)
+. .|...|..++|.|.....|+|+|+|..+ -+||+.+.-.- ........|. -.+.|+.+.
T Consensus 283 L~---~H~a~VNgIaWaPhS~~hictaGDD~qa-liWDl~q~~~~------~~~dPilay~----------a~~EVNqi~ 342 (364)
T KOG0290|consen 283 LR---NHQASVNGIAWAPHSSSHICTAGDDCQA-LIWDLQQMPRE------NGEDPILAYT----------AGGEVNQIQ 342 (364)
T ss_pred hh---cCcccccceEecCCCCceeeecCCcceE-EEEeccccccc------CCCCchhhhh----------ccceeeeee
Confidence 54 5778899999999988899999999999 99999754321 1110111111 123699999
Q ss_pred EcCCCCceee
Q 003822 755 TRPSSKSEIV 764 (793)
Q Consensus 755 ~~P~~~~~iv 764 (793)
|+|..++.|.
T Consensus 343 Ws~~~~Dwia 352 (364)
T KOG0290|consen 343 WSSSQPDWIA 352 (364)
T ss_pred ecccCCCEEE
Confidence 9987666666
No 160
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=4.1e-15 Score=147.68 Aligned_cols=238 Identities=14% Similarity=0.221 Sum_probs=173.5
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCC---------CeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEE
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHEN---------ENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLY 526 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t---------~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vW 526 (793)
|.+-+|+| .+++|++|..+|+|.+..+.. ++ ...++..+|.++|+.++|. ..+|++|+ ||.|+-|
T Consensus 13 vf~qa~sp-~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk-~~iv~eqahdgpiy~~~f~---d~~Lls~g-dG~V~gw 86 (325)
T KOG0649|consen 13 VFAQAISP-SKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGK-LKIVPEQAHDGPIYYLAFH---DDFLLSGG-DGLVYGW 86 (325)
T ss_pred HHHHhhCC-cceEEEEecCCCeEEEEEehhhhccccCCCCC-cceeeccccCCCeeeeeee---hhheeecc-CceEEEe
Confidence 55667899 889999999999999998752 22 2223335899999999986 45677766 5999999
Q ss_pred EcCCCCCccccc-------ccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEE
Q 003822 527 DIRHMPPSIRGM-------HYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVV 599 (793)
Q Consensus 527 Dl~~~~~~~~~~-------~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv 599 (793)
..+......... ..+...+ .-..|+++...|..+.++.+|.|+.++-||+++|+..++++ ||++.|.++
T Consensus 87 ~W~E~~es~~~K~lwe~~~P~~~~~~---evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~r-GHtDYvH~v 162 (325)
T KOG0649|consen 87 EWNEEEESLATKRLWEVKIPMQVDAV---EVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYR-GHTDYVHSV 162 (325)
T ss_pred eehhhhhhccchhhhhhcCccccCcc---cCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEc-CCcceeeee
Confidence 886543311111 1111111 11458999999999999999999999999999999999999 799999999
Q ss_pred EEcCCCCcEEEEEeCCCeEEEEECCCCCccceEEccCCC-------CeEEEEEecCCCEEEEEeCCCeEEEEEcCCCcEE
Q 003822 600 KFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSK-------GNVMVCFSPDDHYLLVSAVDNEVRQLLAVDGRVH 672 (793)
Q Consensus 600 ~fspdg~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~~-------~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~ 672 (793)
.--... ..+++|+.||++|+||.++++.........+. +..-.+..-+..+|++|+ ...+.+|.++..++.
T Consensus 163 v~R~~~-~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGg-Gp~lslwhLrsse~t 240 (325)
T KOG0649|consen 163 VGRNAN-GQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGG-GPKLSLWHLRSSEST 240 (325)
T ss_pred eecccC-cceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecC-CCceeEEeccCCCce
Confidence 984444 47899999999999999998665544332221 221245556778888887 457899999999988
Q ss_pred EEEeeecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEc
Q 003822 673 LNFGITATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCA 713 (793)
Q Consensus 673 ~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv 713 (793)
..|.+. ..+-.+.|..| .+++++....| .-|.+
T Consensus 241 ~vfpip----a~v~~v~F~~d---~vl~~G~g~~v-~~~~l 273 (325)
T KOG0649|consen 241 CVFPIP----ARVHLVDFVDD---CVLIGGEGNHV-QSYTL 273 (325)
T ss_pred EEEecc----cceeEeeeecc---eEEEeccccce-eeeee
Confidence 888643 23445555544 57777777777 88855
No 161
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.71 E-value=1.2e-16 Score=164.62 Aligned_cols=246 Identities=13% Similarity=0.099 Sum_probs=184.3
Q ss_pred eEEEEEeCC---CCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCC
Q 003822 456 PRQFEYHPS---ISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMP 532 (793)
Q Consensus 456 V~~vafsP~---d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~ 532 (793)
-+.++|.-. ...++|.|+.-|.|+|.|+.+++....+. +|..+|..+.+.|.+.+++++||.|.+|++|++++..
T Consensus 92 fytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~--ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~ 169 (385)
T KOG1034|consen 92 FYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYR--GHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDV 169 (385)
T ss_pred eEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhcccee--ccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCe
Confidence 466777642 24589999999999999999999988887 8999999999998889999999999999999999977
Q ss_pred CcccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcE------E---------------------
Q 003822 533 PSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRR------L--------------------- 585 (793)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~------l--------------------- 585 (793)
+.... .+ .-.|.+.|.+++|+.++.+++++|.|.++++|++...+. .
T Consensus 170 Cv~Vf-GG-----~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~ 243 (385)
T KOG1034|consen 170 CVAVF-GG-----VEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPD 243 (385)
T ss_pred EEEEe-cc-----cccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccccc
Confidence 62211 10 124668899999999999999999999999999983211 0
Q ss_pred EEEcccCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEECCC-CCc-----------cceEEccCCCC---eEEEEEecCCC
Q 003822 586 QVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQ-KPI-----------QPCYTASSSKG---NVMVCFSPDDH 650 (793)
Q Consensus 586 ~~~~~gh~~~V~sv~fspdg~~~LaTgs~Dg~IrIWDlrt-~~~-----------~~~~~l~~~~~---~vsv~fSpdg~ 650 (793)
.+-...|...|-|+.|- | .++++-|-++.|..|-.-. .+. .....+.-... .+..+|.|-++
T Consensus 244 fst~diHrnyVDCvrw~--g-d~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~ 320 (385)
T KOG1034|consen 244 FSTTDIHRNYVDCVRWF--G-DFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQK 320 (385)
T ss_pred ccccccccchHHHHHHH--h-hheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHH
Confidence 00112477778888885 4 6899989999999998721 110 00111111111 12467788899
Q ss_pred EEEEEeCCCeEEEEEcCCCcEE-EEEeeecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcC
Q 003822 651 YLLVSAVDNEVRQLLAVDGRVH-LNFGITATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQ 714 (793)
Q Consensus 651 ~Lasgs~Dg~I~IwDl~tg~~~-~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~ 714 (793)
.||.|...|.|.+||+...... .+--.+......+...+|+.||. +|+...+|+.| .-||..
T Consensus 321 ~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs-~lv~vcdd~~V-wrwdrv 383 (385)
T KOG1034|consen 321 MLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGS-ILVLVCDDGTV-WRWDRV 383 (385)
T ss_pred HHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCc-EEEEEeCCCcE-EEEEee
Confidence 9999999999999999887653 22222334556788889999999 88999999999 888854
No 162
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.71 E-value=9.5e-16 Score=168.99 Aligned_cols=271 Identities=14% Similarity=0.272 Sum_probs=202.2
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcc
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSI 535 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~ 535 (793)
|..++|-| ||..|+.+. +..+.+||.+.|..+.+++ +|.+.|.+++|+ .+|..+++|+.|..|.+|...-
T Consensus 15 i~d~afkP-DGsqL~lAA-g~rlliyD~ndG~llqtLK--gHKDtVycVAys-~dGkrFASG~aDK~VI~W~~kl----- 84 (1081)
T KOG1538|consen 15 INDIAFKP-DGTQLILAA-GSRLLVYDTSDGTLLQPLK--GHKDTVYCVAYA-KDGKRFASGSADKSVIIWTSKL----- 84 (1081)
T ss_pred hheeEECC-CCceEEEec-CCEEEEEeCCCcccccccc--cccceEEEEEEc-cCCceeccCCCceeEEEecccc-----
Confidence 78899999 777777665 4579999999999999988 999999999998 8999999999999999998653
Q ss_pred cccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeCC
Q 003822 536 RGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFD 615 (793)
Q Consensus 536 ~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~D 615 (793)
.+...+.|.+.|.|+.|+|-...+++++- ...-+|..... .+...+ ....+.+.+|..|| ++++.|-.+
T Consensus 85 ------EG~LkYSH~D~IQCMsFNP~~h~LasCsL-sdFglWS~~qK-~V~K~k--ss~R~~~CsWtnDG-qylalG~~n 153 (1081)
T KOG1538|consen 85 ------EGILKYSHNDAIQCMSFNPITHQLASCSL-SDFGLWSPEQK-SVSKHK--SSSRIICCSWTNDG-QYLALGMFN 153 (1081)
T ss_pred ------cceeeeccCCeeeEeecCchHHHhhhcch-hhccccChhhh-hHHhhh--hheeEEEeeecCCC-cEEEEeccC
Confidence 34668899999999999998888877763 23557866532 233332 45678899999999 899999999
Q ss_pred CeEEEEECCCCCccceEEcc-CC-CCeEEEEEecCC-----CEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcEEE
Q 003822 616 QDVKLWDLRQKPIQPCYTAS-SS-KGNVMVCFSPDD-----HYLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNYTR 688 (793)
Q Consensus 616 g~IrIWDlrt~~~~~~~~l~-~~-~~~vsv~fSpdg-----~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~ 688 (793)
|+|.+-+-... ......-+ +. .++.+++|+|.. ..+++.....++.++.+. |+.+..- ..-.-....+
T Consensus 154 GTIsiRNk~gE-ek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~---r~L~FdP~Ci 228 (1081)
T KOG1538|consen 154 GTISIRNKNGE-EKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKD---RALNFDPCCI 228 (1081)
T ss_pred ceEEeecCCCC-cceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeeccc---ccCCCCchhh
Confidence 99998764433 22222222 22 344579999953 467788878888877754 4443321 1223445678
Q ss_pred EEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCCCCccceeeeccCCccccCCccEEEEEEcCCCCceeeEeeE
Q 003822 689 SYYLNGRDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKSEIVKVNL 768 (793)
Q Consensus 689 afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~~~~iv~~~l 768 (793)
.+.++|. |++.||.|+.+ .+| .+.|-++. ++. .++..|+.|+.+|++ ..++
T Consensus 229 sYf~NGE-y~LiGGsdk~L-~~f-TR~GvrLG--Tvg-------------------~~D~WIWtV~~~PNs-Q~v~---- 279 (1081)
T KOG1538|consen 229 SYFTNGE-YILLGGSDKQL-SLF-TRDGVRLG--TVG-------------------EQDSWIWTVQAKPNS-QYVV---- 279 (1081)
T ss_pred eeccCCc-EEEEccCCCce-EEE-eecCeEEe--ecc-------------------ccceeEEEEEEccCC-ceEE----
Confidence 9999999 99999999999 888 45566665 332 234589999999964 4444
Q ss_pred EEeCCCcEEEEcC
Q 003822 769 LASTDHCDKECSH 781 (793)
Q Consensus 769 taS~Dg~VkvW~~ 781 (793)
+|.-||+|--+++
T Consensus 280 ~GCqDGTiACyNl 292 (1081)
T KOG1538|consen 280 VGCQDGTIACYNL 292 (1081)
T ss_pred EEEccCeeehhhh
Confidence 6889999877664
No 163
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.70 E-value=5.7e-16 Score=166.34 Aligned_cols=272 Identities=12% Similarity=0.122 Sum_probs=194.0
Q ss_pred CCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEE--EcCCcEEEEEcCCCCCcccccccCCceeEecCCCC
Q 003822 475 DGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAG--SDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQ 552 (793)
Q Consensus 475 DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasg--s~DgtV~vWDl~~~~~~~~~~~~~~~~~~~~~~~~ 552 (793)
..++++||.........+..+.....+.+++|. ..+.|+++ +.|..|++|.-......+. .+.....+.
T Consensus 11 gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~--~~n~lvvas~~gdk~~~~~~K~g~~~~Vp-------~~~k~~gd~ 81 (673)
T KOG4378|consen 11 GDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQ--RRNFLVVASMAGDKVMRIKEKDGKTPEVP-------RVRKLTGDN 81 (673)
T ss_pred CCceEEeecccccCccccccCCCCCcceeeecc--ccceEEEeecCCceeEEEecccCCCCccc-------eeeccccch
Confidence 446999998765544333322333459999996 33445554 5678899997655322111 111112233
Q ss_pred eEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEECCCCCccceE
Q 003822 553 LTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCY 632 (793)
Q Consensus 553 V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~Dg~IrIWDlrt~~~~~~~ 632 (793)
-.|++..+..-+++++|..+.|+|||++...+.+.++ +|+..|++|.++..+ .+||+++..|.|.|..+.++.....+
T Consensus 82 ~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lk-dh~stvt~v~YN~~D-eyiAsvs~gGdiiih~~~t~~~tt~f 159 (673)
T KOG4378|consen 82 AFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLK-DHQSTVTYVDYNNTD-EYIASVSDGGDIIIHGTKTKQKTTTF 159 (673)
T ss_pred HHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhcc-CCcceeEEEEecCCc-ceeEEeccCCcEEEEecccCccccce
Confidence 4566666777899999999999999999666666666 799999999999888 79999999999999999998655555
Q ss_pred EccCCCCeEEEEEecCCCEE-EEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEE
Q 003822 633 TASSSKGNVMVCFSPDDHYL-LVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRIC 711 (793)
Q Consensus 633 ~l~~~~~~vsv~fSpdg~~L-asgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IW 711 (793)
.......+.-+.|+|..+++ .+++.+|.|.+||+....+...+. ..|......++|+|....+|++.+.|..| .+|
T Consensus 160 ~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~--~~HsAP~~gicfspsne~l~vsVG~Dkki-~~y 236 (673)
T KOG4378|consen 160 TIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHAS--EAHSAPCRGICFSPSNEALLVSVGYDKKI-NIY 236 (673)
T ss_pred ecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchh--hhccCCcCcceecCCccceEEEecccceE-EEe
Confidence 54433333349999987765 557889999999998777665553 45666777899999998899999999999 999
Q ss_pred EcCCCcEEEeeeecCCCCCccceeeeccCCccccCCccEEEEEEcCCCCceeeEeeEEEeCCCcEEEEcCCCCCCC
Q 003822 712 CAQTGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKSEIVKVNLLASTDHCDKECSHGQHSRP 787 (793)
Q Consensus 712 Dv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~~~~iv~~~ltaS~Dg~VkvW~~~~~~~~ 787 (793)
|+.+.+... .+.-. .+..+|+|.|++ .-++ .|+..|.|..++......|
T Consensus 237 D~~s~~s~~--~l~y~--------------------~Plstvaf~~~G-~~L~----aG~s~G~~i~YD~R~~k~P 285 (673)
T KOG4378|consen 237 DIRSQASTD--RLTYS--------------------HPLSTVAFSECG-TYLC----AGNSKGELIAYDMRSTKAP 285 (673)
T ss_pred ecccccccc--eeeec--------------------CCcceeeecCCc-eEEE----eecCCceEEEEecccCCCC
Confidence 998776665 33221 146689999974 2222 4677888888887655443
No 164
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.69 E-value=2.1e-15 Score=158.54 Aligned_cols=228 Identities=15% Similarity=0.242 Sum_probs=176.1
Q ss_pred cceEEEEEeCCCCCEEEEEeCCCeEEEEECCCCe-------EEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEE
Q 003822 454 FRPRQFEYHPSISCLMVFGTLDGEIVVVNHENEN-------IVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLY 526 (793)
Q Consensus 454 ~~V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~-------~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vW 526 (793)
-.|..++|+|.+...+|+|+.|.+|.||.+..+. .+..+. +|...|.-|+|+|.-.+.|++++.|.+|.+|
T Consensus 82 ~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~--gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iW 159 (472)
T KOG0303|consen 82 APVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELY--GHQRRVGLVQWHPTAPNVLLSAGSDNTVSIW 159 (472)
T ss_pred ccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEe--ecceeEEEEeecccchhhHhhccCCceEEEE
Confidence 3488899999999999999999999999986543 233444 9999999999998888999999999999999
Q ss_pred EcCCCCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCC-CeEEEEEcCCC
Q 003822 527 DIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKE-HINVVKFSNHS 605 (793)
Q Consensus 527 Dl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~-~V~sv~fspdg 605 (793)
|+.+++. .++..|.+.|++++|+.+++++++++.|..|+|||.++++.+..-. +|.+ .-..+.|-.+|
T Consensus 160 nv~tgea----------li~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~-~heG~k~~Raifl~~g 228 (472)
T KOG0303|consen 160 NVGTGEA----------LITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGV-AHEGAKPARAIFLASG 228 (472)
T ss_pred eccCCce----------eeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecc-cccCCCcceeEEeccC
Confidence 9999875 4456688999999999999999999999999999999999998876 5765 33456687788
Q ss_pred CcEEEEEeC---CCeEEEEECCCC-CccceEEccCCCCeEEEEEecCCCEEEEEe-CCCeEEEEEcCCCcEEEEEeeecC
Q 003822 606 PSIFATSSF---DQDVKLWDLRQK-PIQPCYTASSSKGNVMVCFSPDDHYLLVSA-VDNEVRQLLAVDGRVHLNFGITAT 680 (793)
Q Consensus 606 ~~~LaTgs~---Dg~IrIWDlrt~-~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs-~Dg~I~IwDl~tg~~~~~l~~~~~ 680 (793)
.++.||-. +..+-+||...- +......+....+++---|.||...++.++ .|+.|+.|.+.+..+...+--...
T Consensus 229 -~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~ 307 (472)
T KOG0303|consen 229 -KIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFS 307 (472)
T ss_pred -ceeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEecccc
Confidence 55555543 678999998763 234456677777887778899988886655 699999999887764222211112
Q ss_pred CCCCcEEEEEeeCCC
Q 003822 681 GSSQNYTRSYYLNGR 695 (793)
Q Consensus 681 ~~~~v~s~afspdg~ 695 (793)
.......+.|.|..+
T Consensus 308 S~epQRG~g~mPKRG 322 (472)
T KOG0303|consen 308 SKEPQRGMGFMPKRG 322 (472)
T ss_pred cCCcccccccccccc
Confidence 223344556666543
No 165
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.68 E-value=7.2e-15 Score=172.08 Aligned_cols=315 Identities=14% Similarity=0.121 Sum_probs=201.7
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCC-----CeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCC
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHEN-----ENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRH 530 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t-----~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~ 530 (793)
|..++.++.++.++++|+.||+|++||... +.....+........+.++... ..++.+|.|+.||.|++.+++.
T Consensus 1051 v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~-~~~~~~Av~t~DG~v~~~~id~ 1129 (1431)
T KOG1240|consen 1051 VIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMC-GNGDQFAVSTKDGSVRVLRIDH 1129 (1431)
T ss_pred ccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEec-cCCCeEEEEcCCCeEEEEEccc
Confidence 667888886779999999999999999753 1122222322345678888876 6889999999999999999987
Q ss_pred CCCcccccccCCceeEecCCCCeEEE-EEccCC--CEEEEEECCCcEEEEECCCCcEEEEEcc-cCCCCeEEEEEcCCCC
Q 003822 531 MPPSIRGMHYGAGTVTFDEFDQLTSV-HVNSMD--ELFLASGYSKNIALYDINSGRRLQVFAD-MHKEHINVVKFSNHSP 606 (793)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~~~V~sv-~~s~~~--~~lla~g~Dg~I~IWDl~tg~~l~~~~~-gh~~~V~sv~fspdg~ 606 (793)
......... ..........+.+.++ ++.... ..++.+..-+.|..||+++.....+++. ...+.|++++.+|.+
T Consensus 1130 ~~~~~~~~~-~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~- 1207 (1431)
T KOG1240|consen 1130 YNVSKRVAT-QVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWC- 1207 (1431)
T ss_pred cccccceee-eeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCc-
Confidence 322110000 0001111122333333 232222 2455566779999999998776665542 244789999999999
Q ss_pred cEEEEEeCCCeEEEEECCCCCccceEEccCCCCeEEEEEecC---CCEEEEEe--CCCeEEEEEcCCCcEEEEEeeecC-
Q 003822 607 SIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPD---DHYLLVSA--VDNEVRQLLAVDGRVHLNFGITAT- 680 (793)
Q Consensus 607 ~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~~~~vsv~fSpd---g~~Lasgs--~Dg~I~IwDl~tg~~~~~l~~~~~- 680 (793)
+++++|+..|.+.+||+|-+.....+..+.+..+..+..+|- ..+.++++ ..+.|.+|++.+|.....+.....
T Consensus 1208 ~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~ 1287 (1431)
T KOG1240|consen 1208 NWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGA 1287 (1431)
T ss_pred eEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCC
Confidence 899999999999999999886555555555555555666553 34444444 578999999999977666643200
Q ss_pred ---------------CCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCC--------------CCc
Q 003822 681 ---------------GSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKG--------------SGT 731 (793)
Q Consensus 681 ---------------~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~--------------~~~ 731 (793)
+.-...... .+++..++++|+.|+.| |.||..+.+... +...|.+ ...
T Consensus 1288 p~ls~~~Ps~~~~kp~~~~~~~~~-~~~~~~~~ltggsd~kI-R~wD~~~p~~ss-~~~~~~s~~~~~~~~s~~~~~i~~ 1364 (1431)
T KOG1240|consen 1288 PILSYALPSNDARKPDSLAGISCG-VCEKNGFLLTGGSDMKI-RKWDPTRPEISS-YAVPGPSTSYSTNSESYDLSTIPG 1364 (1431)
T ss_pred cchhhhcccccCCCCCcccceeee-cccCCceeeecCCccce-eeccCCCccccc-ccccCccccccccchhccccccCC
Confidence 000111112 23334489999999999 999998776551 1222210 000
Q ss_pred cc----------------------eeeeccCCccccCCccEEEEEEcCCCCceeeEeeEEEeCCCcEEEEc
Q 003822 732 SM----------------------FVQSLRGDPFRDFNMSILAAYTRPSSKSEIVKVNLLASTDHCDKECS 780 (793)
Q Consensus 732 s~----------------------~v~sl~g~~~~~h~~~V~sva~~P~~~~~iv~~~ltaS~Dg~VkvW~ 780 (793)
.. ........|-..|+.+|+++++.......++ +++.||.|++|.
T Consensus 1365 ~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llv----s~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1365 SQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLV----SSSRDGVIKIWK 1431 (1431)
T ss_pred CccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEE----EecCCCeeeecC
Confidence 01 1111222344478889999998875433444 889999999995
No 166
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.68 E-value=6.1e-14 Score=153.95 Aligned_cols=277 Identities=12% Similarity=0.147 Sum_probs=177.6
Q ss_pred EEEEeCCCeEEEEECCC-Ce--EEEEEeccCCCCCEEEEEEeeCCCCEEEEEE-cCCcEEEEEcCC-CCCcccccccCCc
Q 003822 469 MVFGTLDGEIVVVNHEN-EN--IVSYIPSFGAMNSVLGLCWLKKYPSKLIAGS-DNGSLKLYDIRH-MPPSIRGMHYGAG 543 (793)
Q Consensus 469 Lasgs~DG~I~VWd~~t-~~--~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs-~DgtV~vWDl~~-~~~~~~~~~~~~~ 543 (793)
+++...++.|.+|++.+ ++ .+..+. +.+....++++ +++++|++++ .++.|.+|+++. +......
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~---~~~~~~~l~~s-pd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~------ 74 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVD---VPGQVQPMVIS-PDKRHLYVGVRPEFRVLSYRIADDGALTFAA------ 74 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEe---cCCCCccEEEC-CCCCEEEEEECCCCcEEEEEECCCCceEEee------
Confidence 44556789999999964 43 334443 33556778887 6888876664 588999999973 2211110
Q ss_pred eeEecCCCCeEEEEEccCCCEEEEEEC-CCcEEEEECCC-C---cEEEEEcccCCCCeEEEEEcCCCCcEEEEEeCCCeE
Q 003822 544 TVTFDEFDQLTSVHVNSMDELFLASGY-SKNIALYDINS-G---RRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDV 618 (793)
Q Consensus 544 ~~~~~~~~~V~sv~~s~~~~~lla~g~-Dg~I~IWDl~t-g---~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~Dg~I 618 (793)
..........+.++|+++.+++++. ++.|.+||+.+ + +.+..+. +......++++|++..++++...++.|
T Consensus 75 --~~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~--~~~~~~~~~~~p~g~~l~v~~~~~~~v 150 (330)
T PRK11028 75 --ESPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE--GLEGCHSANIDPDNRTLWVPCLKEDRI 150 (330)
T ss_pred --eecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc--CCCcccEeEeCCCCCEEEEeeCCCCEE
Confidence 1111234678999999999988875 89999999974 3 2333333 334567889999994444666667999
Q ss_pred EEEECCCCC-cc----ceEEccCCCCeEEEEEecCCCEEEEEeC-CCeEEEEEcCC--CcE--EEEEeeecC---CCCCc
Q 003822 619 KLWDLRQKP-IQ----PCYTASSSKGNVMVCFSPDDHYLLVSAV-DNEVRQLLAVD--GRV--HLNFGITAT---GSSQN 685 (793)
Q Consensus 619 rIWDlrt~~-~~----~~~~l~~~~~~vsv~fSpdg~~Lasgs~-Dg~I~IwDl~t--g~~--~~~l~~~~~---~~~~v 685 (793)
.+||+.+.. .. .........++..+.|+|+|++++++.. ++.|.+|++.. ++. +.++...+. +....
T Consensus 151 ~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 230 (330)
T PRK11028 151 RLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWA 230 (330)
T ss_pred EEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccc
Confidence 999997632 11 1122333445567999999999988876 89999999973 333 333322111 11223
Q ss_pred EEEEEeeCCCeEEEEEeC-CCcEEEEEEcCCCcEEEeeeecCCCCCccceeeeccCCccccCCccEEEEEEcCCCCceee
Q 003822 686 YTRSYYLNGRDYIVSGSC-DEHVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKSEIV 764 (793)
Q Consensus 686 ~s~afspdg~~~L~Sgs~-Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~~~~iv 764 (793)
..+.++|+|+ +++++.. ++.| .+|++.+..... ++.++- ... .....+.++|+++..++
T Consensus 231 ~~i~~~pdg~-~lyv~~~~~~~I-~v~~i~~~~~~~--~~~~~~----------~~~------~~p~~~~~~~dg~~l~v 290 (330)
T PRK11028 231 ADIHITPDGR-HLYACDRTASLI-SVFSVSEDGSVL--SFEGHQ----------PTE------TQPRGFNIDHSGKYLIA 290 (330)
T ss_pred eeEEECCCCC-EEEEecCCCCeE-EEEEEeCCCCeE--EEeEEE----------ecc------ccCCceEECCCCCEEEE
Confidence 4578899998 7776654 5677 999996543222 222221 100 12346789997655555
Q ss_pred EeeEEEeCCCcEEEEcCCC
Q 003822 765 KVNLLASTDHCDKECSHGQ 783 (793)
Q Consensus 765 ~~~ltaS~Dg~VkvW~~~~ 783 (793)
....+++|.+|+.+.
T Consensus 291 ----a~~~~~~v~v~~~~~ 305 (330)
T PRK11028 291 ----AGQKSHHISVYEIDG 305 (330)
T ss_pred ----EEccCCcEEEEEEcC
Confidence 445689999998753
No 167
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.68 E-value=3.6e-15 Score=170.51 Aligned_cols=255 Identities=15% Similarity=0.175 Sum_probs=178.9
Q ss_pred ceEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeE--EEE--EeccCCCCCEEEEEEeeCCC--CEEEEEEcCCcEEEEEc
Q 003822 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENI--VSY--IPSFGAMNSVLGLCWLKKYP--SKLIAGSDNGSLKLYDI 528 (793)
Q Consensus 455 ~V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~--i~~--l~~~~h~~~V~sv~fs~~~g--~~Lasgs~DgtV~vWDl 528 (793)
.|+|+.|+|.++.++|.|+.+|.|.+||+..+.. ... .....|..+|+.+.|.. +. .-|++++.||.|..|++
T Consensus 244 ~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~-~~~~~~f~s~ssDG~i~~W~~ 322 (555)
T KOG1587|consen 244 EVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQ-NEHNTEFFSLSSDGSICSWDT 322 (555)
T ss_pred ceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEec-cCCCCceEEEecCCcEeeeec
Confidence 3899999999999999999999999999987654 222 22347899999999973 33 45999999999999988
Q ss_pred CCCCCcccccccCCc---eeEecCCCCeEEEEEccCCC-EEEEEECCCcEEEEECCC---Cc-----EEEEEcccCCCCe
Q 003822 529 RHMPPSIRGMHYGAG---TVTFDEFDQLTSVHVNSMDE-LFLASGYSKNIALYDINS---GR-----RLQVFADMHKEHI 596 (793)
Q Consensus 529 ~~~~~~~~~~~~~~~---~~~~~~~~~V~sv~~s~~~~-~lla~g~Dg~I~IWDl~t---g~-----~l~~~~~gh~~~V 596 (793)
+.-............ .........+++++|.+.+. .|++|+.+|.|.--+... +. ....+. .|.++|
T Consensus 323 ~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~-~h~g~v 401 (555)
T KOG1587|consen 323 DMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFI-THIGPV 401 (555)
T ss_pred cccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccccccccccccc-ccCcce
Confidence 765442222211111 11122335689999987765 566666789988743332 21 122344 589999
Q ss_pred EEEEEcCCCCcEEEEEeCCCeEEEEECCCCCccceEEccCCCC-eEEEEEecCC-CEEEEEeCCCeEEEEEcCCCcEEEE
Q 003822 597 NVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKG-NVMVCFSPDD-HYLLVSAVDNEVRQLLAVDGRVHLN 674 (793)
Q Consensus 597 ~sv~fspdg~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~~~-~vsv~fSpdg-~~Lasgs~Dg~I~IwDl~tg~~~~~ 674 (793)
+++.++|-++..|.+++ |.+|+||..... ..|++.+..+.. +..++|||.. ..++++..||.+.+||+........
T Consensus 402 ~~v~~nPF~~k~fls~g-DW~vriWs~~~~-~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv 479 (555)
T KOG1587|consen 402 YAVSRNPFYPKNFLSVG-DWTVRIWSEDVI-ASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPV 479 (555)
T ss_pred EeeecCCCccceeeeec-cceeEeccccCC-CCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCc
Confidence 99999999977777777 999999997732 245555555555 4569999965 4567777899999999876543222
Q ss_pred EeeecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCC
Q 003822 675 FGITATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTG 716 (793)
Q Consensus 675 l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg 716 (793)
..... +......+.|++.|+ .|+.|...|++ .+|++...
T Consensus 480 ~s~~~-~~~~l~~~~~s~~g~-~lavGd~~G~~-~~~~l~~~ 518 (555)
T KOG1587|consen 480 LSQKV-CSPALTRVRWSPNGK-LLAVGDANGTT-HILKLSES 518 (555)
T ss_pred ccccc-cccccceeecCCCCc-EEEEecCCCcE-EEEEcCch
Confidence 22111 233344556667788 99999999999 99998643
No 168
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.67 E-value=2.6e-15 Score=160.53 Aligned_cols=245 Identities=14% Similarity=0.213 Sum_probs=175.0
Q ss_pred ceEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCc
Q 003822 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS 534 (793)
Q Consensus 455 ~V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~ 534 (793)
.|.++.|+|.+...+++.+.||+|+.-|++++.....+........+.++.|+ .+...++.|..=|...+||.+++...
T Consensus 236 ~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~-~e~~~vl~~~~~G~f~~iD~R~~~s~ 314 (498)
T KOG4328|consen 236 PVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFS-AESRSVLFGDNVGNFNVIDLRTDGSE 314 (498)
T ss_pred cccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeecccc-CCCccEEEeecccceEEEEeecCCcc
Confidence 48999999999999999999999999999987654444432344567778886 44555666666669999999987653
Q ss_pred ccccccCCceeEecCCCCeEEEEEccCCCEEEEE-ECCCcEEEEECCCC--cE---EEEEcccCCCCeEEEEEcCCCCcE
Q 003822 535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLAS-GYSKNIALYDINSG--RR---LQVFADMHKEHINVVKFSNHSPSI 608 (793)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~-g~Dg~I~IWDl~tg--~~---l~~~~~gh~~~V~sv~fspdg~~~ 608 (793)
...+. -|...|++|+++|...+++++ |.|++++|||++.- +. +.++ .|...|.++.|+|.++.
T Consensus 315 ~~~~~--------lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~--~HrrsV~sAyFSPs~gt- 383 (498)
T KOG4328|consen 315 YENLR--------LHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTL--PHRRSVNSAYFSPSGGT- 383 (498)
T ss_pred chhhh--------hhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecc--cccceeeeeEEcCCCCc-
Confidence 32222 233579999999988766555 56999999999862 22 3444 49999999999999965
Q ss_pred EEEEeCCCeEEEEECCC--CCccceEEccCC------CCeEEEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecC
Q 003822 609 FATSSFDQDVKLWDLRQ--KPIQPCYTASSS------KGNVMVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITAT 680 (793)
Q Consensus 609 LaTgs~Dg~IrIWDlrt--~~~~~~~~l~~~------~~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~ 680 (793)
|+|.+.|..|+|||..- ....+..++.+. .......|.|+..++++|..-..|-|+|...++.+..+.. +.
T Consensus 384 l~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~-P~ 462 (498)
T KOG4328|consen 384 LLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHD-PE 462 (498)
T ss_pred eEeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccC-cc
Confidence 99999999999999841 111222232221 1223489999999999999999999999998887776632 11
Q ss_pred CCCCcEEEEEeeCCCeEEEEEe-CCCcEEEEEEcC
Q 003822 681 GSSQNYTRSYYLNGRDYIVSGS-CDEHVVRICCAQ 714 (793)
Q Consensus 681 ~~~~v~s~afspdg~~~L~Sgs-~Dg~II~IWDv~ 714 (793)
.........|+|-+. .+++|+ .-|.| +||--+
T Consensus 463 ~~tI~~vn~~HP~~~-~~~aG~~s~Gki-~vft~k 495 (498)
T KOG4328|consen 463 SSTIPSVNEFHPMRD-TLAAGGNSSGKI-YVFTNK 495 (498)
T ss_pred ccccccceeeccccc-ceeccCCccceE-EEEecC
Confidence 112233457889876 455555 45555 888543
No 169
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.67 E-value=4.4e-13 Score=146.06 Aligned_cols=283 Identities=26% Similarity=0.398 Sum_probs=203.8
Q ss_pred eEEEEE-eCCCCC-EEEEEeC-CCeEEEEECCC-CeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEc-CCcEEEEEcCC
Q 003822 456 PRQFEY-HPSISC-LMVFGTL-DGEIVVVNHEN-ENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSD-NGSLKLYDIRH 530 (793)
Q Consensus 456 V~~vaf-sP~d~~-~Lasgs~-DG~I~VWd~~t-~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~-DgtV~vWDl~~ 530 (793)
+..+.+ ++ ++. .++..+. |+.+.+|+... ......+. .|...|..++|+ +++..+++++. |+.+++|++..
T Consensus 112 ~~~~~~~~~-~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 187 (466)
T COG2319 112 VSKLALSSP-DGNSILLASSSLDGTVKLWDLSTPGKLIRTLE--GHSESVTSLAFS-PDGKLLASGSSLDGTIKLWDLRT 187 (466)
T ss_pred eeeEEEECC-CcceEEeccCCCCccEEEEEecCCCeEEEEEe--cCcccEEEEEEC-CCCCEEEecCCCCCceEEEEcCC
Confidence 455555 77 555 5555444 99999999987 56666665 889999999998 67778888885 99999999987
Q ss_pred CCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEE-ECCCcEEEEECCCCcEEE-EEcccCCCCeEEEEEcCCCCcE
Q 003822 531 MPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLAS-GYSKNIALYDINSGRRLQ-VFADMHKEHINVVKFSNHSPSI 608 (793)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~-g~Dg~I~IWDl~tg~~l~-~~~~gh~~~V~sv~fspdg~~~ 608 (793)
.... . ....|...|.+++++|.+..++++ +.|+.|++||...+.... .+. +|...+ ...|+|++ ..
T Consensus 188 ~~~~-~--------~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~-~~~~~~-~~~~~~~~-~~ 255 (466)
T COG2319 188 GKPL-S--------TLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLS-GHSDSV-VSSFSPDG-SL 255 (466)
T ss_pred CceE-E--------eeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecC-CCCcce-eEeECCCC-CE
Confidence 3321 1 111256789999999777745555 789999999999888887 566 688775 44899998 78
Q ss_pred EEEEeCCCeEEEEECCCCCccceEEccCCCCeE-EEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcEE
Q 003822 609 FATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNYT 687 (793)
Q Consensus 609 LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~~~~v-sv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s 687 (793)
+++++.|+.+++||.+.... ......+|...+ .+.|.|++..+++++.|+.+.+||..+........ ...+...+..
T Consensus 256 ~~~~~~d~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 333 (466)
T COG2319 256 LASGSSDGTIRLWDLRSSSS-LLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLT-LKGHEGPVSS 333 (466)
T ss_pred EEEecCCCcEEEeeecCCCc-EEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEee-ecccCCceEE
Confidence 88999999999999997654 222223444444 58999999999999989999999988887655554 1123335777
Q ss_pred EEEeeCCCeEEEEE-eCCCcEEEEEEcCCCcEEEeeeecCCCCCccceeeeccCCccccCCccEEEEEEcCCCCceeeEe
Q 003822 688 RSYYLNGRDYIVSG-SCDEHVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKSEIVKV 766 (793)
Q Consensus 688 ~afspdg~~~L~Sg-s~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~~~~iv~~ 766 (793)
+.|.+++. .++.+ ..|+.+ ++|+........ ...... .+..+.+.+ . .....
T Consensus 334 ~~~~~~~~-~~~~~~~~d~~~-~~~~~~~~~~~~--~~~~~~--------------------~~~~~~~~~-~-~~~~~- 386 (466)
T COG2319 334 LSFSPDGS-LLVSGGSDDGTI-RLWDLRTGKPLK--TLEGHS--------------------NVLSVSFSP-D-GRVVS- 386 (466)
T ss_pred EEECCCCC-EEEEeecCCCcE-EeeecCCCceeE--EecCCc--------------------eEEEEEECC-C-CCEEE-
Confidence 77832324 44444 688888 899998887222 221111 277888888 6 55551
Q ss_pred eEEEeCCCcEEEEcCCCCC
Q 003822 767 NLLASTDHCDKECSHGQHS 785 (793)
Q Consensus 767 ~ltaS~Dg~VkvW~~~~~~ 785 (793)
.++.++.+.+|+.....
T Consensus 387 --~~~~~~~~~~~~~~~~~ 403 (466)
T COG2319 387 --SGSTDGTVRLWDLSTGS 403 (466)
T ss_pred --EecCCCceEEEecccCe
Confidence 47889999999987665
No 170
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=3.8e-15 Score=152.82 Aligned_cols=210 Identities=16% Similarity=0.202 Sum_probs=153.8
Q ss_pred cCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCc-----EEEEEcccCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEE
Q 003822 548 DEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGR-----RLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWD 622 (793)
Q Consensus 548 ~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~-----~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~Dg~IrIWD 622 (793)
.|.+.|++++|++++.++++.+.|++|++|+++... +++.- ..-+..+.|.|.||...++++.-...++++|-
T Consensus 84 gH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~n--ve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk 161 (420)
T KOG2096|consen 84 GHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQN--VEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYK 161 (420)
T ss_pred ccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhcc--ccCCCceEEEECCCcceEEEEEccCCEEEEEE
Confidence 456889999999999999999999999999998632 12111 12235688999999977777777778899998
Q ss_pred CCCCCc----cceEEc-------cCCCCeEEEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEe
Q 003822 623 LRQKPI----QPCYTA-------SSSKGNVMVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYY 691 (793)
Q Consensus 623 lrt~~~----~~~~~l-------~~~~~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afs 691 (793)
+...+. .+.... ...-.++.+-....+.+|++++.|..|.+|+++ |+.+..+. ......+..+.+
T Consensus 162 ~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~id---tnq~~n~~aavS 237 (420)
T KOG2096|consen 162 LVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSID---TNQSSNYDAAVS 237 (420)
T ss_pred eeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeec---cccccccceeeC
Confidence 754311 011111 111233456677789999999999999999998 99888886 344567788999
Q ss_pred eCCCeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCCCCccceeeeccCCccccCCccEEEEEEcCCCCceeeEeeEEEe
Q 003822 692 LNGRDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKSEIVKVNLLAS 771 (793)
Q Consensus 692 pdg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~~~~iv~~~ltaS 771 (793)
|+|+ +|++++-.--| +||.+--++ .|. |-...+--.++||...|++++|+|+ ...++ ++|
T Consensus 238 P~GR-Fia~~gFTpDV-kVwE~~f~k-------dG~------fqev~rvf~LkGH~saV~~~aFsn~-S~r~v----tvS 297 (420)
T KOG2096|consen 238 PDGR-FIAVSGFTPDV-KVWEPIFTK-------DGT------FQEVKRVFSLKGHQSAVLAAAFSNS-STRAV----TVS 297 (420)
T ss_pred CCCc-EEEEecCCCCc-eEEEEEecc-------Ccc------hhhhhhhheeccchhheeeeeeCCC-cceeE----EEe
Confidence 9999 99999988889 999863221 111 2122223455677889999999994 56666 999
Q ss_pred CCCcEEEEcCCC
Q 003822 772 TDHCDKECSHGQ 783 (793)
Q Consensus 772 ~Dg~VkvW~~~~ 783 (793)
.||+.|+|+.+-
T Consensus 298 kDG~wriwdtdV 309 (420)
T KOG2096|consen 298 KDGKWRIWDTDV 309 (420)
T ss_pred cCCcEEEeeccc
Confidence 999999999653
No 171
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.65 E-value=1.9e-14 Score=146.15 Aligned_cols=305 Identities=15% Similarity=0.176 Sum_probs=203.0
Q ss_pred CEEEEEe----CCCeEEEEECCCCeE-EEEEeccCCCCCEEEEEEeeCCCCEEEEEEcC-------CcEEEEEcCCCCCc
Q 003822 467 CLMVFGT----LDGEIVVVNHENENI-VSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDN-------GSLKLYDIRHMPPS 534 (793)
Q Consensus 467 ~~Lasgs----~DG~I~VWd~~t~~~-i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~D-------gtV~vWDl~~~~~~ 534 (793)
-.+++|+ .|+.|.+.+++.+.- +..-.+..|.+.|+.++-+|.+...|+|+..+ ..+.||.+......
T Consensus 27 icFlvgTnslK~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~ 106 (370)
T KOG1007|consen 27 ICFLVGTNSLKEDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQ 106 (370)
T ss_pred eEEEEeccccCCcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCc
Confidence 3455565 367787777654321 21112236788999999888888888887653 23679998764332
Q ss_pred cc--ccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcE-EEEEc----ccCCCCeEEEEEcCC-CC
Q 003822 535 IR--GMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRR-LQVFA----DMHKEHINVVKFSNH-SP 606 (793)
Q Consensus 535 ~~--~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~-l~~~~----~gh~~~V~sv~fspd-g~ 606 (793)
.. .+. ......-.+.+.|.|+.|.|++..+++.. |..|.+|++..+.. +..+. ..|....++-+|+|. .+
T Consensus 107 S~~~tlE-~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdg 184 (370)
T KOG1007|consen 107 SNSSTLE-CVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDG 184 (370)
T ss_pred cccchhh-HhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCcc
Confidence 00 000 00011112336799999999887777665 89999999997765 44332 135667888999993 32
Q ss_pred cEEEEEeCCCeEEEEECCCCCccceEEccCCCC-eEEEEEecCCC-EEEEEeCCCeEEEEEcCCCc-EEEEEeeecCCCC
Q 003822 607 SIFATSSFDQDVKLWDLRQKPIQPCYTASSSKG-NVMVCFSPDDH-YLLVSAVDNEVRQLLAVDGR-VHLNFGITATGSS 683 (793)
Q Consensus 607 ~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~~~-~vsv~fSpdg~-~Lasgs~Dg~I~IwDl~tg~-~~~~l~~~~~~~~ 683 (793)
+.+++. .|+++..||+|+....-... ..|.. +..+.|.|+-+ +|++++.||.|++||.+.-+ ++.++ +.|..
T Consensus 185 nqv~tt-~d~tl~~~D~RT~~~~~sI~-dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el---~~HsH 259 (370)
T KOG1007|consen 185 NQVATT-SDSTLQFWDLRTMKKNNSIE-DAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQEL---PGHSH 259 (370)
T ss_pred ceEEEe-CCCcEEEEEccchhhhcchh-hhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCcccccc---CCCce
Confidence 666654 48899999999864322222 23333 34599999865 56778899999999998754 34444 46778
Q ss_pred CcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCCC-----CccceeeeccC---CccccCCccEEEEEE
Q 003822 684 QNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKGS-----GTSMFVQSLRG---DPFRDFNMSILAAYT 755 (793)
Q Consensus 684 ~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~~-----~~s~~v~sl~g---~~~~~h~~~V~sva~ 755 (793)
.++.+.|.|--..+|++||.|..| .+|...+-..-..+......+ ....-+..|+. +.+..|.++|.+++|
T Consensus 260 WvW~VRfn~~hdqLiLs~~SDs~V-~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aW 338 (370)
T KOG1007|consen 260 WVWAVRFNPEHDQLILSGGSDSAV-NLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAW 338 (370)
T ss_pred EEEEEEecCccceEEEecCCCcee-EEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEee
Confidence 999999999776699999999999 999876543222112221110 11112222322 367789999999999
Q ss_pred cCCCCceeeEeeEEEeCCCcEEEEcCCC
Q 003822 756 RPSSKSEIVKVNLLASTDHCDKECSHGQ 783 (793)
Q Consensus 756 ~P~~~~~iv~~~ltaS~Dg~VkvW~~~~ 783 (793)
+...+|.++ +-|-||.+.|=+.+.
T Consensus 339 SsadPWiFA----SLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 339 SSADPWIFA----SLSYDGRVIISSVPR 362 (370)
T ss_pred ccCCCeeEE----EeccCceEEeecCCh
Confidence 998899888 889999988877643
No 172
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.65 E-value=9.4e-15 Score=149.85 Aligned_cols=198 Identities=13% Similarity=0.156 Sum_probs=156.5
Q ss_pred EEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECC
Q 003822 501 VLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDIN 580 (793)
Q Consensus 501 V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~ 580 (793)
..++.|+ +.|.+||+|..||.|.+||+.+... . .+.-.|..+|++++|+++|..+++++.|..|.+||+.
T Consensus 26 a~~~~Fs-~~G~~lAvGc~nG~vvI~D~~T~~i-a--------r~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~ 95 (405)
T KOG1273|consen 26 AECCQFS-RWGDYLAVGCANGRVVIYDFDTFRI-A--------RMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLL 95 (405)
T ss_pred cceEEec-cCcceeeeeccCCcEEEEEccccch-h--------hhhhccccceeEEEecCCCCEeeeecCCceeEEEecc
Confidence 6788997 7899999999999999999998553 1 1223455789999999999999999999999999999
Q ss_pred CCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEECCCCCccceEEcc-CCCCeE--EEEEecCCCEEEEEeC
Q 003822 581 SGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTAS-SSKGNV--MVCFSPDDHYLLVSAV 657 (793)
Q Consensus 581 tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~-~~~~~v--sv~fSpdg~~Lasgs~ 657 (793)
.|.+++.+. ..++|+.+.|+|...+.+++.-.+..-.+-++..+....+-.-. +..... +..|.+.|++|++|..
T Consensus 96 ~gs~l~rir--f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGts 173 (405)
T KOG1273|consen 96 KGSPLKRIR--FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTS 173 (405)
T ss_pred CCCceeEEE--ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecC
Confidence 999999998 78999999999987677766666655556565543211111111 111111 2458999999999999
Q ss_pred CCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcC
Q 003822 658 DNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQ 714 (793)
Q Consensus 658 Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~ 714 (793)
.|.+.++|..+-+++..+++.. ...+-.+.++..|+ +++.-+.|..| |.|+++
T Consensus 174 KGkllv~~a~t~e~vas~rits--~~~IK~I~~s~~g~-~liiNtsDRvI-R~ye~~ 226 (405)
T KOG1273|consen 174 KGKLLVYDAETLECVASFRITS--VQAIKQIIVSRKGR-FLIINTSDRVI-RTYEIS 226 (405)
T ss_pred cceEEEEecchheeeeeeeech--heeeeEEEEeccCc-EEEEecCCceE-EEEehh
Confidence 9999999999999999887643 35677788899998 99999999888 999875
No 173
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.65 E-value=2.1e-15 Score=165.10 Aligned_cols=257 Identities=14% Similarity=0.139 Sum_probs=183.8
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCC------CeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcC
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHEN------ENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIR 529 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t------~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~ 529 (793)
++.++|+| ....|++++.||++.+|+++. ......+.+.+|.++|.|++.. .++..+++|+.||+|+.|++.
T Consensus 297 ir~l~~~~-sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~-~n~~~~ysgg~Dg~I~~w~~p 374 (577)
T KOG0642|consen 297 IRALAFHP-SEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVP-SNGEHCYSGGIDGTIRCWNLP 374 (577)
T ss_pred hhhhhcCC-CCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEec-CCceEEEeeccCceeeeeccC
Confidence 78899999 777999999999999999932 2234444555999999999985 899999999999999999876
Q ss_pred CCCCccccccc-CCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEccc-CCCCeEEEEEcCCCCc
Q 003822 530 HMPPSIRGMHY-GAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADM-HKEHINVVKFSNHSPS 607 (793)
Q Consensus 530 ~~~~~~~~~~~-~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~g-h~~~V~sv~fspdg~~ 607 (793)
...-.-..... .-......|.+.|+.+++++....+++++.||+++.|+.....+ .+|... -.+...++.+-...+.
T Consensus 375 ~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a 453 (577)
T KOG0642|consen 375 PNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPA 453 (577)
T ss_pred CCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEeeccchhH
Confidence 32211110000 00122346778999999999999999999999999999887666 333311 2233456666544333
Q ss_pred EEEEEeCCCeEEEEECCCCCccceEEccCC------CCeEEEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCC
Q 003822 608 IFATSSFDQDVKLWDLRQKPIQPCYTASSS------KGNVMVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATG 681 (793)
Q Consensus 608 ~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~------~~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~ 681 (793)
+.++...-+.--++|........++..... .....+.++|.+...+++..|+.|+++|..+++++.... .+
T Consensus 454 ~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~---a~ 530 (577)
T KOG0642|consen 454 HSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMV---AH 530 (577)
T ss_pred hhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchhee---ec
Confidence 333333333333444444322222222111 122348899999999999999999999999999987765 45
Q ss_pred CCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEE
Q 003822 682 SSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRLR 720 (793)
Q Consensus 682 ~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~ 720 (793)
...+.++++.|+|. +|++|+.|+++ ++|.+....++.
T Consensus 531 ~~svtslai~~ng~-~l~s~s~d~sv-~l~kld~k~~~~ 567 (577)
T KOG0642|consen 531 KDSVTSLAIDPNGP-YLMSGSHDGSV-RLWKLDVKTCVL 567 (577)
T ss_pred cceecceeecCCCc-eEEeecCCcee-ehhhccchheee
Confidence 66788999999999 99999999999 999987776665
No 174
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.65 E-value=4.7e-15 Score=162.68 Aligned_cols=243 Identities=19% Similarity=0.165 Sum_probs=178.2
Q ss_pred ccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcccccccCCceeEecCCCCeEEEEEccCCC-EEEEEECCC
Q 003822 494 SFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDE-LFLASGYSK 572 (793)
Q Consensus 494 ~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~-~lla~g~Dg 572 (793)
..||++.|.+|... +.|.+|++|+.||+|++|.+.++.+. .++...+.|.+|+|+|... .+++++.+.
T Consensus 396 yrGHtg~Vr~iSvd-p~G~wlasGsdDGtvriWEi~TgRcv----------r~~~~d~~I~~vaw~P~~~~~vLAvA~~~ 464 (733)
T KOG0650|consen 396 YRGHTGLVRSISVD-PSGEWLASGSDDGTVRIWEIATGRCV----------RTVQFDSEIRSVAWNPLSDLCVLAVAVGE 464 (733)
T ss_pred EeccCCeEEEEEec-CCcceeeecCCCCcEEEEEeecceEE----------EEEeecceeEEEEecCCCCceeEEEEecC
Confidence 34999999999986 69999999999999999999998873 2334446789999988764 344444444
Q ss_pred cEEEEECCCCcE-------------------------------------EEEEcccCCCCeEEEEEcCCCCcEEEEEeCC
Q 003822 573 NIALYDINSGRR-------------------------------------LQVFADMHKEHINVVKFSNHSPSIFATSSFD 615 (793)
Q Consensus 573 ~I~IWDl~tg~~-------------------------------------l~~~~~gh~~~V~sv~fspdg~~~LaTgs~D 615 (793)
.+.|.+..-|.. +.... .|...|+.+.||..| .+|+|...+
T Consensus 465 ~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I-~~~k~i~~vtWHrkG-DYlatV~~~ 542 (733)
T KOG0650|consen 465 CVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVI-KHPKSIRQVTWHRKG-DYLATVMPD 542 (733)
T ss_pred ceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEE-ecCCccceeeeecCC-ceEEEeccC
Confidence 455444332200 11111 277899999999999 899887764
Q ss_pred ---CeEEEEECCCCCccceEEccCCCCeEEEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEee
Q 003822 616 ---QDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYL 692 (793)
Q Consensus 616 ---g~IrIWDlrt~~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afsp 692 (793)
..|.|+++.....+.-+. ..+..+..+.|+|...+|++++. ..|+|||+..+.++.++. .+...+..++.+|
T Consensus 543 ~~~~~VliHQLSK~~sQ~PF~-kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~---tg~kwiS~msihp 617 (733)
T KOG0650|consen 543 SGNKSVLIHQLSKRKSQSPFR-KSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLL---TGSKWISSMSIHP 617 (733)
T ss_pred CCcceEEEEecccccccCchh-hcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHh---cCCeeeeeeeecC
Confidence 458999998764332222 12334557999999999999984 679999999887766654 4667788899999
Q ss_pred CCCeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCCCCccceeeeccCCccccCCccEEEEEEcCCCCceeeEeeEEEeC
Q 003822 693 NGRDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKSEIVKVNLLAST 772 (793)
Q Consensus 693 dg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~~~~iv~~~ltaS~ 772 (793)
.|. -|+.|+.|+.+ ..+|+.-+.... ..++-|...|++|+||+. ...+. +||.
T Consensus 618 ~GD-nli~gs~d~k~-~WfDldlsskPy--------------------k~lr~H~~avr~Va~H~r-yPLfa----s~sd 670 (733)
T KOG0650|consen 618 NGD-NLILGSYDKKM-CWFDLDLSSKPY--------------------KTLRLHEKAVRSVAFHKR-YPLFA----SGSD 670 (733)
T ss_pred CCC-eEEEecCCCee-EEEEcccCcchh--------------------HHhhhhhhhhhhhhhccc-cceee----eecC
Confidence 998 88999999999 888887654332 233455678999999994 44444 7888
Q ss_pred CCcEEEEcC
Q 003822 773 DHCDKECSH 781 (793)
Q Consensus 773 Dg~VkvW~~ 781 (793)
||++.|++.
T Consensus 671 Dgtv~Vfhg 679 (733)
T KOG0650|consen 671 DGTVIVFHG 679 (733)
T ss_pred CCcEEEEee
Confidence 999999874
No 175
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.64 E-value=5.4e-15 Score=152.11 Aligned_cols=235 Identities=16% Similarity=0.214 Sum_probs=176.5
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCE---EEEEEeeCCCCEEEEEEcCCcEEEEEc-CCCCC-cccccc
Q 003822 465 ISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSV---LGLCWLKKYPSKLIAGSDNGSLKLYDI-RHMPP-SIRGMH 539 (793)
Q Consensus 465 d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V---~sv~fs~~~g~~Lasgs~DgtV~vWDl-~~~~~-~~~~~~ 539 (793)
+..++|+.+.+.-|++||.-+|+....+....|.+.+ .+++|+ ++|..|++|. ...|+++|+ +.+.. ......
T Consensus 122 ~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs-~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~ 199 (406)
T KOG2919|consen 122 STNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFS-PDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTV 199 (406)
T ss_pred ccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEec-CCCCeEeecc-cceEEEeeccCCCCCCcchhhh
Confidence 7789999999999999999999998888777776654 468997 8999988875 569999999 44432 111110
Q ss_pred cCCceeEecCCCCeEEEEEccCCC-EEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeC-CCe
Q 003822 540 YGAGTVTFDEFDQLTSVHVNSMDE-LFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSF-DQD 617 (793)
Q Consensus 540 ~~~~~~~~~~~~~V~sv~~s~~~~-~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~-Dg~ 617 (793)
.+ -.+...+-+.+++|+|.+. .+++++....+-||.-..+.++..+- +|.+.|+.+.|+++| +.|.+|+. |-.
T Consensus 200 ~~---~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llg-gh~gGvThL~~~edG-n~lfsGaRk~dk 274 (406)
T KOG2919|consen 200 TK---GKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLG-GHGGGVTHLQWCEDG-NKLFSGARKDDK 274 (406)
T ss_pred hc---ccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeec-ccCCCeeeEEeccCc-CeecccccCCCe
Confidence 00 0122235588999999887 55556678889999988899999888 799999999999999 67777775 778
Q ss_pred EEEEECCCCCccceEEccCCCCeE--E--EEEecCCCEEEEEeCCCeEEEEEcCC-CcEEEEEeeecCCCCCcEEEEEee
Q 003822 618 VKLWDLRQKPIQPCYTASSSKGNV--M--VCFSPDDHYLLVSAVDNEVRQLLAVD-GRVHLNFGITATGSSQNYTRSYYL 692 (793)
Q Consensus 618 IrIWDlrt~~~~~~~~l~~~~~~v--s--v~fSpdg~~Lasgs~Dg~I~IwDl~t-g~~~~~l~~~~~~~~~v~s~afsp 692 (793)
|-.||+|... .+++.+..|.+.+ . ....|+|++|++|+.||.|++||+.+ |..+..+ ......+..++++|
T Consensus 275 Il~WDiR~~~-~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~---~~~sd~vNgvslnP 350 (406)
T KOG2919|consen 275 ILCWDIRYSR-DPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVT---GNYSDTVNGVSLNP 350 (406)
T ss_pred EEEEeehhcc-chhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCccccc---ccccccccceecCc
Confidence 9999999853 5667776665532 2 44568999999999999999999988 5544333 24566778888999
Q ss_pred CCCeEEEEEeCCCcEEEEEEcCC
Q 003822 693 NGRDYIVSGSCDEHVVRICCAQT 715 (793)
Q Consensus 693 dg~~~L~Sgs~Dg~II~IWDv~t 715 (793)
-=. ++++++.. ++|...+
T Consensus 351 ~mp-ilatssGq----r~f~~~~ 368 (406)
T KOG2919|consen 351 IMP-ILATSSGQ----RIFKYPK 368 (406)
T ss_pred ccc-eeeeccCc----eeecCCC
Confidence 855 77776654 4554433
No 176
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.63 E-value=3.7e-15 Score=163.67 Aligned_cols=249 Identities=15% Similarity=0.240 Sum_probs=182.4
Q ss_pred EeCCCCCEEEE--EeCCCeEEEEECCCCeEE--EEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCccc
Q 003822 461 YHPSISCLMVF--GTLDGEIVVVNHENENIV--SYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIR 536 (793)
Q Consensus 461 fsP~d~~~Las--gs~DG~I~VWd~~t~~~i--~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~~ 536 (793)
|+. +...+|+ .+..|.|-||+++....+ ..++..-....|+.+.|.|.+...|++++.||.|++|.+..+.....
T Consensus 587 fca-n~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~ 665 (1012)
T KOG1445|consen 587 FCA-NNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPEN 665 (1012)
T ss_pred eee-ccceEEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcc
Confidence 444 4455554 455789999999753221 11221134567999999999999999999999999999987654211
Q ss_pred ccccCCceeEecCCCCeEEEEEccCC-CEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeCC
Q 003822 537 GMHYGAGTVTFDEFDQLTSVHVNSMD-ELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFD 615 (793)
Q Consensus 537 ~~~~~~~~~~~~~~~~V~sv~~s~~~-~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~D 615 (793)
.. ....+.-.|...|+++.|||-. +.++++++|-+|++||+.+++....+. +|++.|..++|+|+| +.+||.+.|
T Consensus 666 ~~--tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~-gHtdqIf~~AWSpdG-r~~AtVcKD 741 (1012)
T KOG1445|consen 666 EM--TPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLV-GHTDQIFGIAWSPDG-RRIATVCKD 741 (1012)
T ss_pred cC--CcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheec-cCcCceeEEEECCCC-cceeeeecC
Confidence 11 1123334567889999999975 455666789999999999999999998 799999999999999 899999999
Q ss_pred CeEEEEECCCCCccceEEccCCCCe--EEEEEecCCCEEEEEeCC----CeEEEEEcCCC--cEEEEEeeecCCCCCcEE
Q 003822 616 QDVKLWDLRQKPIQPCYTASSSKGN--VMVCFSPDDHYLLVSAVD----NEVRQLLAVDG--RVHLNFGITATGSSQNYT 687 (793)
Q Consensus 616 g~IrIWDlrt~~~~~~~~l~~~~~~--vsv~fSpdg~~Lasgs~D----g~I~IwDl~tg--~~~~~l~~~~~~~~~v~s 687 (793)
|+|++|..+++. .+++...+..+. ..+.|.-+|+++++.+-| ..|.+||..+- ..+.+..+ .....+..
T Consensus 742 g~~rVy~Prs~e-~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~l--Dvaps~Lv 818 (1012)
T KOG1445|consen 742 GTLRVYEPRSRE-QPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVL--DVAPSPLV 818 (1012)
T ss_pred ceEEEeCCCCCC-CccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeee--cccCcccc
Confidence 999999999864 456655443332 248999999999998765 46888987653 34444332 22233444
Q ss_pred EEEeeCCCeEEEEEeCCCcEEEEEEcCCCcE
Q 003822 688 RSYYLNGRDYIVSGSCDEHVVRICCAQTGRR 718 (793)
Q Consensus 688 ~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~ 718 (793)
-.|.+|...++++|-.|..| ++|.+-....
T Consensus 819 P~YD~Ds~~lfltGKGD~~v-~~yEv~~esP 848 (1012)
T KOG1445|consen 819 PHYDYDSNVLFLTGKGDRFV-NMYEVIYESP 848 (1012)
T ss_pred ccccCCCceEEEecCCCceE-EEEEecCCCc
Confidence 56777888788999999999 9998855443
No 177
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.62 E-value=6.9e-14 Score=147.99 Aligned_cols=293 Identities=13% Similarity=0.096 Sum_probs=195.8
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCe-------EEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEc
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENEN-------IVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDI 528 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~-------~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl 528 (793)
|+++.|++.+.+.++||+.|..|++|-++.+. ....-.+..|..+|+++.|+ ++|++|++|+.+|.|.+|-.
T Consensus 16 v~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~-p~gelLASg~D~g~v~lWk~ 94 (434)
T KOG1009|consen 16 VYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFS-PDGELLASGGDGGEVFLWKQ 94 (434)
T ss_pred eEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEc-CCcCeeeecCCCceEEEEEe
Confidence 89999999666699999999999999876432 22222234899999999998 89999999999999999987
Q ss_pred CCCCCc------ccccccCC-ceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEE
Q 003822 529 RHMPPS------IRGMHYGA-GTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKF 601 (793)
Q Consensus 529 ~~~~~~------~~~~~~~~-~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~f 601 (793)
..-... ......+. ....-.|...|..++|.+++..+++++.|..+++||+..|+....+. .|...|..++|
T Consensus 95 ~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~-dh~~yvqgvaw 173 (434)
T KOG1009|consen 95 GDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILD-DHEHYVQGVAW 173 (434)
T ss_pred cCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecc-ccccccceeec
Confidence 731110 00000011 11122366789999999999999999999999999999999999998 69999999999
Q ss_pred cCCCCcEEEEEeCCCeEEEEECCCCCccceE------------------EccCCCC----eEEEEEecCCCEEEEEeC--
Q 003822 602 SNHSPSIFATSSFDQDVKLWDLRQKPIQPCY------------------TASSSKG----NVMVCFSPDDHYLLVSAV-- 657 (793)
Q Consensus 602 spdg~~~LaTgs~Dg~IrIWDlrt~~~~~~~------------------~l~~~~~----~vsv~fSpdg~~Lasgs~-- 657 (793)
.|-+ +++++-+.|...+.+++...+..... .+..... ...++|+|+|..+++.+.
T Consensus 174 Dpl~-qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~ 252 (434)
T KOG1009|consen 174 DPLN-QYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLF 252 (434)
T ss_pred chhh-hhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEccccee
Confidence 9998 89999999987777776543211111 0100000 014899999999988652
Q ss_pred --CC-----eEEEEEcCCC-cEEEEEeeecCCCCCcEEEEEee-----------------CCCeEEEEEeCCCcEEEEEE
Q 003822 658 --DN-----EVRQLLAVDG-RVHLNFGITATGSSQNYTRSYYL-----------------NGRDYIVSGSCDEHVVRICC 712 (793)
Q Consensus 658 --Dg-----~I~IwDl~tg-~~~~~l~~~~~~~~~v~s~afsp-----------------dg~~~L~Sgs~Dg~II~IWD 712 (793)
.+ ..++|+-..- ++...+ +........+.|+| .-+..++.++. ..| +|||
T Consensus 253 ~~g~~~~~n~tYvfsrk~l~rP~~~l---p~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~-~sv-yvyd 327 (434)
T KOG1009|consen 253 KVGGGVFRNTSYVFSRKDLKRPAARL---PSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATK-NSV-YVYD 327 (434)
T ss_pred eeCCceeeceeEeeccccccCceeec---CCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeec-ceE-EEec
Confidence 22 2344543221 111111 11222233333322 22323444544 467 9999
Q ss_pred cCCCcEEEeeeecCCCCCccceeeeccCCccccCCccEEEEEEcCCCCceeeEeeEEEeCCCcEEEEcC
Q 003822 713 AQTGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKSEIVKVNLLASTDHCDKECSH 781 (793)
Q Consensus 713 v~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~~~~iv~~~ltaS~Dg~VkvW~~ 781 (793)
.++-+++. .+. .+ |-..++.++|++++ ..++ +.|-||...+-..
T Consensus 328 tq~~~P~~--~v~-----------ni-------hy~~iTDiaws~dg-~~l~----vSS~DGyCS~vtf 371 (434)
T KOG1009|consen 328 TQTLEPLA--VVD-----------NI-------HYSAITDIAWSDDG-SVLL----VSSTDGFCSLVTF 371 (434)
T ss_pred cccccceE--EEe-----------ee-------eeeeecceeecCCC-cEEE----EeccCCceEEEEE
Confidence 99988887 332 22 34579999999964 4444 6788887666433
No 178
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.62 E-value=5.1e-15 Score=159.36 Aligned_cols=295 Identities=16% Similarity=0.168 Sum_probs=214.6
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCC-CEEEEEEcCCcEEEEEcCCCCCc
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYP-SKLIAGSDNGSLKLYDIRHMPPS 534 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g-~~Lasgs~DgtV~vWDl~~~~~~ 534 (793)
|..|.|+. .|..|++|+.|..|.+||+.+++....+.. +|...|..-.|.|..+ ..+++++.||.|++=.+......
T Consensus 145 VntV~FN~-~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~S-GH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~ 222 (559)
T KOG1334|consen 145 VNTVHFNQ-RGDVLASGSDDLQVVVWDWVSGSPKLSFES-GHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYV 222 (559)
T ss_pred cceeeecc-cCceeeccCccceEEeehhhccCccccccc-ccccchhhhhccCCCCCcCceeccccCceeeeeeccccce
Confidence 78899999 999999999999999999999888777765 8999999999987655 57999999999998776543321
Q ss_pred ccccccCCceeEecCCCCeEEEEEccCCC-EEEEEECCCcEEEEECCCCcEEEEEc--ccCCC---CeEEEEEcCCCCcE
Q 003822 535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDE-LFLASGYSKNIALYDINSGRRLQVFA--DMHKE---HINVVKFSNHSPSI 608 (793)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~V~sv~~s~~~~-~lla~g~Dg~I~IWDl~tg~~l~~~~--~gh~~---~V~sv~fspdg~~~ 608 (793)
. .......|.++|.-++.-|... .|+++|.|+.+.-+|++++.+...+. ..+.. ..++++.+|..++.
T Consensus 223 e------~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~ 296 (559)
T KOG1334|consen 223 E------NTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNE 296 (559)
T ss_pred e------cceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccc
Confidence 1 1123456778888898888775 56777889999999999876554443 12333 56789999998889
Q ss_pred EEEEeCCCeEEEEECCCCCccc----eEEc-------cCCCCeEEEEEecCCCEEEEEeCCCeEEEEEcCC--C------
Q 003822 609 FATSSFDQDVKLWDLRQKPIQP----CYTA-------SSSKGNVMVCFSPDDHYLLVSAVDNEVRQLLAVD--G------ 669 (793)
Q Consensus 609 LaTgs~Dg~IrIWDlrt~~~~~----~~~l-------~~~~~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~t--g------ 669 (793)
+++|+.|..+++||.+.-.... +..+ .....+.+++|+.+|.-|+++..|-.|+++.-.- |
T Consensus 297 faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~ 376 (559)
T KOG1334|consen 297 FAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPS 376 (559)
T ss_pred cccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCC
Confidence 9999999999999998642210 1110 2233455799998888888888888999995332 2
Q ss_pred ----cEEEE-EeeecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCCCCccceeeeccCCccc
Q 003822 670 ----RVHLN-FGITATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPFR 744 (793)
Q Consensus 670 ----~~~~~-l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~ 744 (793)
..+.. ++++.. ...|-.+.|......|+++||+=|.| .||+-.+++.++ .++|..
T Consensus 377 s~~~~~~k~vYKGHrN-~~TVKgVNFfGPrsEyVvSGSDCGhI-FiW~K~t~eii~--~MegDr---------------- 436 (559)
T KOG1334|consen 377 SPREQYVKRVYKGHRN-SRTVKGVNFFGPRSEYVVSGSDCGHI-FIWDKKTGEIIR--FMEGDR---------------- 436 (559)
T ss_pred cchhhccchhhccccc-ccccceeeeccCccceEEecCccceE-EEEecchhHHHH--Hhhccc----------------
Confidence 11222 433222 22355566665444499999999999 999999999998 777654
Q ss_pred cCCccEEEEEEcCCCCceeeEeeEEEeCCCcEEEEcCCCCCC
Q 003822 745 DFNMSILAAYTRPSSKSEIVKVNLLASTDHCDKECSHGQHSR 786 (793)
Q Consensus 745 ~h~~~V~sva~~P~~~~~iv~~~ltaS~Dg~VkvW~~~~~~~ 786 (793)
..|+++.-||. --.++ +.+-|..||||.+....+
T Consensus 437 ---~VVNCLEpHP~-~PvLA----sSGid~DVKIWTP~~~er 470 (559)
T KOG1334|consen 437 ---HVVNCLEPHPH-LPVLA----SSGIDHDVKIWTPLTAER 470 (559)
T ss_pred ---ceEeccCCCCC-Cchhh----ccCCccceeeecCCcccc
Confidence 16788888884 22222 445589999999855443
No 179
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.62 E-value=5.1e-13 Score=146.66 Aligned_cols=248 Identities=11% Similarity=0.143 Sum_probs=159.6
Q ss_pred eEEEEEeCCCCCEEEEEe-CCCeEEEEECC-CCeE--EEEEeccCCCCCEEEEEEeeCCCCEEEEEE-cCCcEEEEEcCC
Q 003822 456 PRQFEYHPSISCLMVFGT-LDGEIVVVNHE-NENI--VSYIPSFGAMNSVLGLCWLKKYPSKLIAGS-DNGSLKLYDIRH 530 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs-~DG~I~VWd~~-t~~~--i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs-~DgtV~vWDl~~ 530 (793)
+..++++| ++++|++++ .++.|.+|+++ +++. +.... ..+....++|+ ++++++++++ .++.|.+|++++
T Consensus 37 ~~~l~~sp-d~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~---~~~~p~~i~~~-~~g~~l~v~~~~~~~v~v~~~~~ 111 (330)
T PRK11028 37 VQPMVISP-DKRHLYVGVRPEFRVLSYRIADDGALTFAAESP---LPGSPTHISTD-HQGRFLFSASYNANCVSVSPLDK 111 (330)
T ss_pred CccEEECC-CCCEEEEEECCCCcEEEEEECCCCceEEeeeec---CCCCceEEEEC-CCCCEEEEEEcCCCeEEEEEECC
Confidence 56789999 888887664 57889999986 3433 22222 23356788887 7888887776 488999999975
Q ss_pred CCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEEC-CCcEEEEECCCCcEEE-----EEcccCCCCeEEEEEcCC
Q 003822 531 MPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY-SKNIALYDINSGRRLQ-----VFADMHKEHINVVKFSNH 604 (793)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~-Dg~I~IWDl~tg~~l~-----~~~~gh~~~V~sv~fspd 604 (793)
........ ....+.....+++++|+++.++++.. ++.|.+||+.+...+. ............++|+|+
T Consensus 112 ~g~~~~~~------~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pd 185 (330)
T PRK11028 112 DGIPVAPI------QIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPN 185 (330)
T ss_pred CCCCCCce------eeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCC
Confidence 32211100 01122234677889999988887774 7999999998733221 111012345678999999
Q ss_pred CCcEEEEEeC-CCeEEEEECCC--CCccceEEcc-------CCCCeEEEEEecCCCEEEEEeC-CCeEEEEEcCCCc-EE
Q 003822 605 SPSIFATSSF-DQDVKLWDLRQ--KPIQPCYTAS-------SSKGNVMVCFSPDDHYLLVSAV-DNEVRQLLAVDGR-VH 672 (793)
Q Consensus 605 g~~~LaTgs~-Dg~IrIWDlrt--~~~~~~~~l~-------~~~~~vsv~fSpdg~~Lasgs~-Dg~I~IwDl~tg~-~~ 672 (793)
| ++++++.. +++|.+||+.. +....+..+. +......+.++|+|++++++.. ++.|.+|++.... ..
T Consensus 186 g-~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~ 264 (330)
T PRK11028 186 Q-QYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVL 264 (330)
T ss_pred C-CEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeE
Confidence 9 66666555 89999999974 2222222221 1112224889999999999864 7899999986532 22
Q ss_pred EEEeeecCCCCCcEEEEEeeCCCeEEEEEe-CCCcEEEEEEcC--CCcE
Q 003822 673 LNFGITATGSSQNYTRSYYLNGRDYIVSGS-CDEHVVRICCAQ--TGRR 718 (793)
Q Consensus 673 ~~l~~~~~~~~~v~s~afspdg~~~L~Sgs-~Dg~II~IWDv~--tg~~ 718 (793)
........ ......+.++|+|+ +|++++ .+++| .+|++. +|..
T Consensus 265 ~~~~~~~~-~~~p~~~~~~~dg~-~l~va~~~~~~v-~v~~~~~~~g~l 310 (330)
T PRK11028 265 SFEGHQPT-ETQPRGFNIDHSGK-YLIAAGQKSHHI-SVYEIDGETGLL 310 (330)
T ss_pred EEeEEEec-cccCCceEECCCCC-EEEEEEccCCcE-EEEEEcCCCCcE
Confidence 11211112 23455789999999 555544 58888 999874 4543
No 180
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.59 E-value=7.8e-13 Score=136.74 Aligned_cols=286 Identities=13% Similarity=0.151 Sum_probs=194.1
Q ss_pred eEEEEEeC----CCCCEEEEEeCCCeEEEEECCCCe---EEEEEeccCCCCCEEEEEEeeC---CCCEEEEEEcCCcEEE
Q 003822 456 PRQFEYHP----SISCLMVFGTLDGEIVVVNHENEN---IVSYIPSFGAMNSVLGLCWLKK---YPSKLIAGSDNGSLKL 525 (793)
Q Consensus 456 V~~vafsP----~d~~~Lasgs~DG~I~VWd~~t~~---~i~~l~~~~h~~~V~sv~fs~~---~g~~Lasgs~DgtV~v 525 (793)
+..++|++ .....+|+++. ..+.+|...... .++.+.-..|......++|+-. ..-++|+|+.-|.|+|
T Consensus 41 I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrV 119 (385)
T KOG1034|consen 41 IFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRV 119 (385)
T ss_pred cceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecceeEEEE
Confidence 66677774 24566777664 468888875433 3444444457888899999622 1347888999999999
Q ss_pred EEcCCCCCcccccccCCceeEecCCCCeEEEEEccCCC-EEEEEECCCcEEEEECCCCcEEEEEcc--cCCCCeEEEEEc
Q 003822 526 YDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDE-LFLASGYSKNIALYDINSGRRLQVFAD--MHKEHINVVKFS 602 (793)
Q Consensus 526 WDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~-~lla~g~Dg~I~IWDl~tg~~l~~~~~--gh~~~V~sv~fs 602 (793)
.|+.+++.. .....|...|+.+.++|... ++++++.|..|++|++++..++..|-+ ||.+.|.++.|+
T Consensus 120 id~~~~~~~---------~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~ 190 (385)
T KOG1034|consen 120 IDVVSGQCS---------KNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFS 190 (385)
T ss_pred Eecchhhhc---------cceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEc
Confidence 999987652 11235667899999999875 555566799999999999999998863 799999999999
Q ss_pred CCCCcEEEEEeCCCeEEEEECCCCCc----cceEEc----------------------cCCCCeE-EEEEecCCCEEEEE
Q 003822 603 NHSPSIFATSSFDQDVKLWDLRQKPI----QPCYTA----------------------SSSKGNV-MVCFSPDDHYLLVS 655 (793)
Q Consensus 603 pdg~~~LaTgs~Dg~IrIWDlrt~~~----~~~~~l----------------------~~~~~~v-sv~fSpdg~~Lasg 655 (793)
++| ..+++++.|.++++|++...+. ...+.. .-|...+ ++.|- |.++++-
T Consensus 191 ~~g-d~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSk 267 (385)
T KOG1034|consen 191 LDG-DRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSK 267 (385)
T ss_pred CCC-CeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeec
Confidence 999 7999999999999999984311 011000 0111111 12221 6889999
Q ss_pred eCCCeEEEEEcCC-CcE-------------EEEEeeecCCCCCcE--EEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEE
Q 003822 656 AVDNEVRQLLAVD-GRV-------------HLNFGITATGSSQNY--TRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRL 719 (793)
Q Consensus 656 s~Dg~I~IwDl~t-g~~-------------~~~l~~~~~~~~~v~--s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l 719 (793)
+-++.|..|.... ++. +.++.. ....++ ..+|.|-++ .||.|...|.+ .+||+...+..
T Consensus 268 scenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~---~~c~iWfirf~~d~~~~-~la~gnq~g~v-~vwdL~~~ep~ 342 (385)
T KOG1034|consen 268 SCENAIVCWKPGKLEESIHNVKPPESATTILGEFDY---PMCDIWFIRFAFDPWQK-MLALGNQSGKV-YVWDLDNNEPP 342 (385)
T ss_pred ccCceEEEEecchhhhhhhccCCCccceeeeeEecc---CccceEEEEEeecHHHH-HHhhccCCCcE-EEEECCCCCCc
Confidence 9999999998621 111 112211 122333 344556666 89999999999 99999887764
Q ss_pred EeeeecCCCCCccceeeeccCCccccCCccEEEEEEcCCCCceeeEeeEEEeCCCcEEEEcC
Q 003822 720 RDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKSEIVKVNLLASTDHCDKECSH 781 (793)
Q Consensus 720 ~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~~~~iv~~~ltaS~Dg~VkvW~~ 781 (793)
...++..+. . ...|...+|+.++ ..++ ...+|++|--|+.
T Consensus 343 ~~ttl~~s~----------~-------~~tVRQ~sfS~dg-s~lv----~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 343 KCTTLTHSK----------S-------GSTVRQTSFSRDG-SILV----LVCDDGTVWRWDR 382 (385)
T ss_pred cCceEEecc----------c-------cceeeeeeecccC-cEEE----EEeCCCcEEEEEe
Confidence 311222221 1 1368889999863 3444 6889999877764
No 181
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.59 E-value=4.6e-14 Score=143.53 Aligned_cols=199 Identities=17% Similarity=0.289 Sum_probs=154.7
Q ss_pred cccceEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeE---EEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEc
Q 003822 452 RSFRPRQFEYHPSISCLMVFGTLDGEIVVVNHENENI---VSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDI 528 (793)
Q Consensus 452 ~~~~V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~---i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl 528 (793)
.+..++++.|+..+.+++.+.+-|-+..|||++++.. ..++ ..|...|..|+|.....+.||+.|.||+|++||+
T Consensus 149 ~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQL--IAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDL 226 (364)
T KOG0290|consen 149 FCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQL--IAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDL 226 (364)
T ss_pred cCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEE--EecCcceeEEEeccCccceEEEecCCCcEEEEEe
Confidence 4445899999999999999999999999999998733 3333 3899999999998545578999999999999999
Q ss_pred CCCCCcccccccCCceeEecC---CCCeEEEEEccCCCEEEEEE--CCCcEEEEECCC-CcEEEEEcccCCCCeEEEEEc
Q 003822 529 RHMPPSIRGMHYGAGTVTFDE---FDQLTSVHVNSMDELFLASG--YSKNIALYDINS-GRRLQVFADMHKEHINVVKFS 602 (793)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~---~~~V~sv~~s~~~~~lla~g--~Dg~I~IWDl~t-g~~l~~~~~gh~~~V~sv~fs 602 (793)
+..+- . .+.+.. ..+...++|++++..+++.- +...|.|.|++. ..++..++ +|++.|++++|.
T Consensus 227 R~leH--------S-TIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~-~H~a~VNgIaWa 296 (364)
T KOG0290|consen 227 RSLEH--------S-TIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLR-NHQASVNGIAWA 296 (364)
T ss_pred ccccc--------c-eEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhh-cCcccccceEec
Confidence 98543 1 122222 35688899998887766653 458899999996 56888888 699999999999
Q ss_pred CCCCcEEEEEeCCCeEEEEECCCCCc----cceEEccCCCCeEEEEEec-CCCEEEEEeCCCeEEE
Q 003822 603 NHSPSIFATSSFDQDVKLWDLRQKPI----QPCYTASSSKGNVMVCFSP-DDHYLLVSAVDNEVRQ 663 (793)
Q Consensus 603 pdg~~~LaTgs~Dg~IrIWDlrt~~~----~~~~~l~~~~~~vsv~fSp-dg~~Lasgs~Dg~I~I 663 (793)
|..+..++|++.|..+-+||+.+... .++........+..+.|+| .+.+++++. ++++.+
T Consensus 297 PhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~~-~kklei 361 (364)
T KOG0290|consen 297 PHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPDWIAICF-GKKLEI 361 (364)
T ss_pred CCCCceeeecCCcceEEEEecccccccCCCCchhhhhccceeeeeeecccCCCEEEEEe-cCeeeE
Confidence 99999999999999999999986422 2333333334455699996 577888877 444444
No 182
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.58 E-value=1.6e-13 Score=156.28 Aligned_cols=225 Identities=16% Similarity=0.126 Sum_probs=152.3
Q ss_pred CCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcC---CcEEEEEcCCCCCcccccccCCceeEecCCC
Q 003822 475 DGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDN---GSLKLYDIRHMPPSIRGMHYGAGTVTFDEFD 551 (793)
Q Consensus 475 DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~D---gtV~vWDl~~~~~~~~~~~~~~~~~~~~~~~ 551 (793)
+.+|.+||.+... ...+. .|...+.+.+|+ ++|+.++.++.+ ..|.+||+.+++..... .+ ..
T Consensus 183 ~~~i~i~d~dg~~-~~~lt--~~~~~v~~p~wS-PDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~--------~~--~g 248 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVN--RSSQPLMSPAWS-PDGSKLAYVSFENKKSQLVVHDLRSGARKVVA--------SF--RG 248 (429)
T ss_pred eEEEEEECCCCCC-ceEec--cCCCccccceEc-CCCCEEEEEEecCCCcEEEEEeCCCCceEEEe--------cC--CC
Confidence 5789999987554 33443 677789999998 789988887654 36999999876532110 01 12
Q ss_pred CeEEEEEccCCCEEEEEE-CCCcEE--EEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEECCCCCc
Q 003822 552 QLTSVHVNSMDELFLASG-YSKNIA--LYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPI 628 (793)
Q Consensus 552 ~V~sv~~s~~~~~lla~g-~Dg~I~--IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~Dg~IrIWDlrt~~~ 628 (793)
....++|+|++..++.++ .+|.+. +||+.++.. ..+. .+...+....|+|+|..+++++..+|...||++.....
T Consensus 249 ~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt-~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~ 326 (429)
T PRK01742 249 HNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTP-SQLT-SGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGG 326 (429)
T ss_pred ccCceeECCCCCEEEEEEecCCcEEEEEEECCCCCe-Eeec-cCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence 234678999999888876 577655 457766654 4455 36677889999999944444555678888888754321
Q ss_pred cceEEccCCCCeEEEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCCCeEEEEEeCCCcEE
Q 003822 629 QPCYTASSSKGNVMVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNGRDYIVSGSCDEHVV 708 (793)
Q Consensus 629 ~~~~~l~~~~~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II 708 (793)
... .+ .+.. ....|+|||++|+.++.++ +.+||+.+++...... . .......|+|+|+ +|+.++.++.+
T Consensus 327 ~~~-~l-~~~~-~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~---~--~~~~~~~~sPdG~-~i~~~s~~g~~- 395 (429)
T PRK01742 327 GAS-LV-GGRG-YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSS---T--FLDESPSISPNGI-MIIYSSTQGLG- 395 (429)
T ss_pred CeE-Ee-cCCC-CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecC---C--CCCCCceECCCCC-EEEEEEcCCCc-
Confidence 211 11 2222 3478999999999888765 5669999887643221 1 1234578999999 88888889988
Q ss_pred EEEEc--CCCcEEEeeeecCCC
Q 003822 709 RICCA--QTGRRLRDISLEGKG 728 (793)
Q Consensus 709 ~IWDv--~tg~~l~~~~L~gh~ 728 (793)
.+|++ .+|+.++ .+.+|.
T Consensus 396 ~~l~~~~~~G~~~~--~l~~~~ 415 (429)
T PRK01742 396 KVLQLVSADGRFKA--RLPGSD 415 (429)
T ss_pred eEEEEEECCCCceE--EccCCC
Confidence 88876 3577666 555544
No 183
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.58 E-value=3.3e-13 Score=158.38 Aligned_cols=290 Identities=13% Similarity=0.110 Sum_probs=187.2
Q ss_pred EECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcccccccCCceeEec-CCCCeEEEEEc
Q 003822 481 VNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFD-EFDQLTSVHVN 559 (793)
Q Consensus 481 Wd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~~~~~~~~~~~~~~-~~~~V~sv~~s 559 (793)
|+.+ |..+..+. .|...|..++-+++++.+|++||.||+|++|+.+.-.... .......++. ....+.++...
T Consensus 1034 W~p~-G~lVAhL~--Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~---~s~rS~ltys~~~sr~~~vt~~ 1107 (1431)
T KOG1240|consen 1034 WNPR-GILVAHLH--EHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEG---GSARSELTYSPEGSRVEKVTMC 1107 (1431)
T ss_pred CCcc-ceEeehhh--hccccccceeecCCCCceEEEecCCceEEEeeehhhhcCc---ceeeeeEEEeccCCceEEEEec
Confidence 6654 66666654 8899999999887788999999999999999998643211 1112233444 45678889888
Q ss_pred cCCCEEEEEECCCcEEEEECCCC--c-----EEEEEcccCCCCe-EEEEEcCCCCc-EEEEEeCCCeEEEEECCCCCccc
Q 003822 560 SMDELFLASGYSKNIALYDINSG--R-----RLQVFADMHKEHI-NVVKFSNHSPS-IFATSSFDQDVKLWDLRQKPIQP 630 (793)
Q Consensus 560 ~~~~~lla~g~Dg~I~IWDl~tg--~-----~l~~~~~gh~~~V-~sv~fspdg~~-~LaTgs~Dg~IrIWDlrt~~~~~ 630 (793)
+.+..+++++.||.|.+.++... + ..........+.+ ..-+|...... .++.+..-+.|..||+++....-
T Consensus 1108 ~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w 1187 (1431)
T KOG1240|consen 1108 GNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAW 1187 (1431)
T ss_pred cCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHH
Confidence 99999999999999999998862 1 1111111112222 23344333323 78888888999999999864333
Q ss_pred eEEcc-CCCCeEEEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCCC--eEEEEEeC--CC
Q 003822 631 CYTAS-SSKGNVMVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNGR--DYIVSGSC--DE 705 (793)
Q Consensus 631 ~~~l~-~~~~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg~--~~L~Sgs~--Dg 705 (793)
....+ .|..+.+++.+|.+.++++|+..|.+.+||++-+.++..+.. .....+..+...|--+ ...++++. .+
T Consensus 1188 ~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~--P~~~~i~~v~~~~~~~~~S~~vs~~~~~~n 1265 (1431)
T KOG1240|consen 1188 RLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEH--PARAPIRHVWLCPTYPQESVSVSAGSSSNN 1265 (1431)
T ss_pred hhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccC--cccCCcceEEeeccCCCCceEEEecccCCC
Confidence 33333 344455699999999999999999999999999988887753 3345566655554322 25555444 56
Q ss_pred cEEEEEEcCCCcEEEeeeecCC-CCCccceeeeccCCccccCCccEEEEEEcCCCCceeeEeeEEEeCCCcEEEEcCCCC
Q 003822 706 HVVRICCAQTGRRLRDISLEGK-GSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKSEIVKVNLLASTDHCDKECSHGQH 784 (793)
Q Consensus 706 ~II~IWDv~tg~~l~~~~L~gh-~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~~~~iv~~~ltaS~Dg~VkvW~~~~~ 784 (793)
.+ .+|++.+|.+-. ++... +.....+..... ..-+. ..+......+..++. ..++|+.|+.||.|+....
T Consensus 1266 ev-s~wn~~~g~~~~--vl~~s~~~p~ls~~~Ps~-~~~kp--~~~~~~~~~~~~~~~---~~ltggsd~kIR~wD~~~p 1336 (1431)
T KOG1240|consen 1266 EV-STWNMETGLRQT--VLWASDGAPILSYALPSN-DARKP--DSLAGISCGVCEKNG---FLLTGGSDMKIRKWDPTRP 1336 (1431)
T ss_pred ce-eeeecccCcceE--EEEcCCCCcchhhhcccc-cCCCC--CcccceeeecccCCc---eeeecCCccceeeccCCCc
Confidence 67 999999997777 66544 212222222221 00011 122222222222222 2358999999999998776
Q ss_pred CCC
Q 003822 785 SRP 787 (793)
Q Consensus 785 ~~~ 787 (793)
...
T Consensus 1337 ~~s 1339 (1431)
T KOG1240|consen 1337 EIS 1339 (1431)
T ss_pred ccc
Confidence 644
No 184
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.58 E-value=6.1e-13 Score=152.35 Aligned_cols=276 Identities=15% Similarity=0.095 Sum_probs=190.6
Q ss_pred CCeEEEEECCCC-eEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcccccccCCceeEecCCCCe
Q 003822 475 DGEIVVVNHENE-NIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQL 553 (793)
Q Consensus 475 DG~I~VWd~~t~-~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V 553 (793)
++.+.||++... .+...+ .-...|++++|+|.++++++.|..+|.|.+||++.+..... .........|..++
T Consensus 221 ~~~~~vW~~~~p~~Pe~~~---~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~---s~ls~~~~sh~~~v 294 (555)
T KOG1587|consen 221 DGVLLVWSLKNPNTPELVL---ESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPP---SGLSALEVSHSEPV 294 (555)
T ss_pred CceEEEEecCCCCCceEEE---ecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCC---cccccccccCCcCe
Confidence 357999999866 333333 34678999999999999999999999999999998765321 11223345677889
Q ss_pred EEEEEccCCC--EEEEEECCCcEEEEECCCCcE-EEEE-----c-----ccCCCCeEEEEEcCCCCcEEEEEeCCCeEEE
Q 003822 554 TSVHVNSMDE--LFLASGYSKNIALYDINSGRR-LQVF-----A-----DMHKEHINVVKFSNHSPSIFATSSFDQDVKL 620 (793)
Q Consensus 554 ~sv~~s~~~~--~lla~g~Dg~I~IWDl~tg~~-l~~~-----~-----~gh~~~V~sv~fspdg~~~LaTgs~Dg~IrI 620 (793)
+.+.|..... .+++++.||.|..|+++.-.. .... . ..-...+++++|.+..++.|+.|+.+|.|.-
T Consensus 295 ~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~ 374 (555)
T KOG1587|consen 295 TAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYK 374 (555)
T ss_pred EEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEE
Confidence 9999876544 499999999999998875322 1111 1 0123468899999999999999999999877
Q ss_pred EECCCCCccc------eEEccCCCCeE-EEEEecCCCEEEEEeCCCeEEEEEcC-CCcEEEEEeeecCCCCCcEEEEEee
Q 003822 621 WDLRQKPIQP------CYTASSSKGNV-MVCFSPDDHYLLVSAVDNEVRQLLAV-DGRVHLNFGITATGSSQNYTRSYYL 692 (793)
Q Consensus 621 WDlrt~~~~~------~~~l~~~~~~v-sv~fSpdg~~Lasgs~Dg~I~IwDl~-tg~~~~~l~~~~~~~~~v~s~afsp 692 (793)
=+........ ......|.+.+ ++.++|-+..++..+.|.+++||... ...++..+. .....+..++|||
T Consensus 375 ~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~---~~~~~v~~vaWSp 451 (555)
T KOG1587|consen 375 GCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLD---SSPDYVTDVAWSP 451 (555)
T ss_pred EeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhh---hccceeeeeEEcC
Confidence 3333222122 22233344444 69999987766666669999999977 555555553 2344588999999
Q ss_pred CCCeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCCCCccceeeeccCCccccCCccEEEEEEcCCCCceeeEeeEEEeC
Q 003822 693 NGRDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKSEIVKVNLLAST 772 (793)
Q Consensus 693 dg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~~~~iv~~~ltaS~ 772 (793)
.....++++..||.+ .+||+.....-. +.+. + ........+.|++. ...++ +|..
T Consensus 452 trpavF~~~d~~G~l-~iWDLl~~~~~P--------------v~s~---~--~~~~~l~~~~~s~~-g~~la----vGd~ 506 (555)
T KOG1587|consen 452 TRPAVFATVDGDGNL-DIWDLLQDDEEP--------------VLSQ---K--VCSPALTRVRWSPN-GKLLA----VGDA 506 (555)
T ss_pred cCceEEEEEcCCCce-ehhhhhccccCC--------------cccc---c--ccccccceeecCCC-CcEEE----EecC
Confidence 988799999999999 999986543322 1111 0 00124455667773 34444 7888
Q ss_pred CCcEEEEcCCCC
Q 003822 773 DHCDKECSHGQH 784 (793)
Q Consensus 773 Dg~VkvW~~~~~ 784 (793)
.|++++|.+...
T Consensus 507 ~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 507 NGTTHILKLSES 518 (555)
T ss_pred CCcEEEEEcCch
Confidence 999999998654
No 185
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.57 E-value=3.3e-13 Score=139.18 Aligned_cols=233 Identities=15% Similarity=0.138 Sum_probs=172.0
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCe---EEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCC
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENEN---IVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMP 532 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~---~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~ 532 (793)
|+|.+|++ +...+|.+.....|.||.....+ ...++. .|...|++|+|. +..+.|++++.|..-++|....+.
T Consensus 13 itchAwn~-drt~iAv~~~~~evhiy~~~~~~~w~~~htls--~Hd~~vtgvdWa-p~snrIvtcs~drnayVw~~~~~~ 88 (361)
T KOG1523|consen 13 ITCHAWNS-DRTQIAVSPNNHEVHIYSMLGADLWEPAHTLS--EHDKIVTGVDWA-PKSNRIVTCSHDRNAYVWTQPSGG 88 (361)
T ss_pred eeeeeecC-CCceEEeccCCceEEEEEecCCCCceeceehh--hhCcceeEEeec-CCCCceeEccCCCCccccccCCCC
Confidence 89999999 99999999999999999987665 344554 899999999998 788899999999999999985433
Q ss_pred CcccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcE---EEEEcccCCCCeEEEEEcCCCCcEE
Q 003822 533 PSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRR---LQVFADMHKEHINVVKFSNHSPSIF 609 (793)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~---l~~~~~gh~~~V~sv~fspdg~~~L 609 (793)
.- ....+...+...+++|.|+|.++.|++++....|.||-.+...- -+.++..+...|+++.|+|++ -++
T Consensus 89 ~W------kptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnn-VLl 161 (361)
T KOG1523|consen 89 TW------KPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNN-VLL 161 (361)
T ss_pred ee------ccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCc-cee
Confidence 21 11234456668899999999999999999999999987774332 122333577899999999998 899
Q ss_pred EEEeCCCeEEEEECC-----CCC-------c----cceEEccCCCCeE-EEEEecCCCEEEEEeCCCeEEEEEcCCCc-E
Q 003822 610 ATSSFDQDVKLWDLR-----QKP-------I----QPCYTASSSKGNV-MVCFSPDDHYLLVSAVDNEVRQLLAVDGR-V 671 (793)
Q Consensus 610 aTgs~Dg~IrIWDlr-----t~~-------~----~~~~~l~~~~~~v-sv~fSpdg~~Lasgs~Dg~I~IwDl~tg~-~ 671 (793)
++|+.|+.+|||..- ... . ..........+.+ .+.|+|+|..|+-.+.|..+.+-|..... .
T Consensus 162 aaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~ 241 (361)
T KOG1523|consen 162 AAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSER 241 (361)
T ss_pred cccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchh
Confidence 999999999998642 110 0 0111221222333 59999999999999999999999977664 2
Q ss_pred EEEEeeecCCCCCcEEEEEeeCCCeEEEEEeCC
Q 003822 672 HLNFGITATGSSQNYTRSYYLNGRDYIVSGSCD 704 (793)
Q Consensus 672 ~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~D 704 (793)
+.... ...-...++.|-.+.. ++.++.|
T Consensus 242 v~~~~---~~~lP~ls~~~ise~~--vv~ag~~ 269 (361)
T KOG1523|consen 242 VQSVA---TAQLPLLSVSWISENS--VVAAGYD 269 (361)
T ss_pred ccchh---hccCCceeeEeecCCc--eeecCCC
Confidence 23332 1224455666766654 5555555
No 186
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.55 E-value=1.9e-12 Score=148.56 Aligned_cols=303 Identities=14% Similarity=0.096 Sum_probs=209.0
Q ss_pred CcccceEEEEEeCCCCCEEEEEeCCCeEEEEECCC--CeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEc
Q 003822 451 NRSFRPRQFEYHPSISCLMVFGTLDGEIVVVNHEN--ENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDI 528 (793)
Q Consensus 451 ~~~~~V~~vafsP~d~~~Lasgs~DG~I~VWd~~t--~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl 528 (793)
.|.+-++|+++|| +++++|+|..||.|.||.--. +.....-.++-|...|.+++|+ .+|.+|++|+..|.+.+|.+
T Consensus 203 ~Htf~~t~~~~sp-n~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS-~~G~~LlSGG~E~VLv~Wq~ 280 (792)
T KOG1963|consen 203 HHTFNITCVALSP-NERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFS-SDGAYLLSGGREGVLVLWQL 280 (792)
T ss_pred hhcccceeEEecc-ccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEe-cCCceEeecccceEEEEEee
Confidence 4455589999999 999999999999999996432 2222222234688999999998 89999999999999999999
Q ss_pred CCCCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcc----------cCCCCeEE
Q 003822 529 RHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFAD----------MHKEHINV 598 (793)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~----------gh~~~V~s 598 (793)
+++++... ..-.++|..+.++|++........|+.|.+....+.....++.+ ...+-.+.
T Consensus 281 ~T~~kqfL----------PRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~ 350 (792)
T KOG1963|consen 281 ETGKKQFL----------PRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTG 350 (792)
T ss_pred cCCCcccc----------cccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCcccccccccccee
Confidence 99775211 12236799999999999999999999999998866544433331 12445678
Q ss_pred EEEcCCCCcEEEEEeCCCeEEEEECCCCCccceEEc------cC----CCCeEEEEEecCCCEEEEEe--------CC--
Q 003822 599 VKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTA------SS----SKGNVMVCFSPDDHYLLVSA--------VD-- 658 (793)
Q Consensus 599 v~fspdg~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l------~~----~~~~vsv~fSpdg~~Lasgs--------~D-- 658 (793)
++++|.. +.++-.+..|.|.+||+-+......+.. .+ +.++++++.+-.|.+++++- .|
T Consensus 351 ~~idpr~-~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e 429 (792)
T KOG1963|consen 351 VSIDPRT-NSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGE 429 (792)
T ss_pred EEEcCCC-CceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCce
Confidence 8999955 6788889999999999987633211111 11 11233577777899999874 22
Q ss_pred CeEEEEEcCCCcE--EEEEeeecCCCCCcEEEEEeeCCCe-EEEEEeCCCcEEEEEEcCCCcEEEeeeecCCCCCcccee
Q 003822 659 NEVRQLLAVDGRV--HLNFGITATGSSQNYTRSYYLNGRD-YIVSGSCDEHVVRICCAQTGRRLRDISLEGKGSGTSMFV 735 (793)
Q Consensus 659 g~I~IwDl~tg~~--~~~l~~~~~~~~~v~s~afspdg~~-~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~v 735 (793)
..+++|-...... ...-.+...|.......++.+.-+. ..++++.||.+ +||-....+.+. ...+.|.
T Consensus 430 ~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~-KiW~~~~~~n~~--------k~~s~W~ 500 (792)
T KOG1963|consen 430 VSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDF-KIWVFTDDSNIY--------KKSSNWT 500 (792)
T ss_pred EEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeE-EEEEEecccccC--------cCccceE
Confidence 3568886543321 1111223345555555555544333 78999999999 999886555443 1222344
Q ss_pred eeccCCccccCCccEEEEEEcCCCCceeeEeeEEEeCCCcEEEEcCCCC
Q 003822 736 QSLRGDPFRDFNMSILAAYTRPSSKSEIVKVNLLASTDHCDKECSHGQH 784 (793)
Q Consensus 736 ~sl~g~~~~~h~~~V~sva~~P~~~~~iv~~~ltaS~Dg~VkvW~~~~~ 784 (793)
...-+. -|..++.+.+|+.++ -+ +++|.|++|-+|++...
T Consensus 501 c~~i~s---y~k~~i~a~~fs~dG--sl----la~s~~~~Itiwd~~~~ 540 (792)
T KOG1963|consen 501 CKAIGS---YHKTPITALCFSQDG--SL----LAVSFDDTITIWDYDTK 540 (792)
T ss_pred Eeeeec---cccCcccchhhcCCC--cE----EEEecCCEEEEecCCCh
Confidence 433322 256689999999975 23 36899999999999883
No 187
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.55 E-value=6.1e-14 Score=153.68 Aligned_cols=259 Identities=15% Similarity=0.113 Sum_probs=179.3
Q ss_pred ccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcccccccCCceeEe-cCCCCeEEEEEccCCCEEEEEECCC
Q 003822 494 SFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTF-DEFDQLTSVHVNSMDELFLASGYSK 572 (793)
Q Consensus 494 ~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~~~~~~~~~~~~~-~~~~~V~sv~~s~~~~~lla~g~Dg 572 (793)
...|...|..+.|. +....|++++.||++++|+++.... ..-.......+| .|.++|.|+++.+.+..++++|.||
T Consensus 290 l~s~~d~ir~l~~~-~sep~lit~sed~~lk~WnLqk~~~--s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg 366 (577)
T KOG0642|consen 290 LRSHDDCIRALAFH-PSEPVLITASEDGTLKLWNLQKAKK--SAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDG 366 (577)
T ss_pred eecchhhhhhhhcC-CCCCeEEEeccccchhhhhhcccCC--ccccceeeeEEEecccCceEEEEecCCceEEEeeccCc
Confidence 34788899999986 6677899999999999999954221 011111223344 5668999999999999999999999
Q ss_pred cEEEEECCCC----------cEEEEEcccCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEECCCCCccceEEc-cCCCCeE
Q 003822 573 NIALYDINSG----------RRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTA-SSSKGNV 641 (793)
Q Consensus 573 ~I~IWDl~tg----------~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l-~~~~~~v 641 (793)
+|+.|++... .....+. ||.+.|+.+++++.. ..|++++.||+++.|+...... .++.. ..+.-+.
T Consensus 367 ~I~~w~~p~n~dp~ds~dp~vl~~~l~-Ghtdavw~l~~s~~~-~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Pl 443 (577)
T KOG0642|consen 367 TIRCWNLPPNQDPDDSYDPSVLSGTLL-GHTDAVWLLALSSTK-DRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPL 443 (577)
T ss_pred eeeeeccCCCCCcccccCcchhcccee-ccccceeeeeecccc-cceeeecCCceEEeeccCCcCc-cccCCccccCCcc
Confidence 9999966521 1223455 799999999999987 7899999999999999877543 22222 2333445
Q ss_pred EEEEecCC-CEEEEEeCCCeEEEEEcCCCcEEEEEeeecCC----CCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCC
Q 003822 642 MVCFSPDD-HYLLVSAVDNEVRQLLAVDGRVHLNFGITATG----SSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTG 716 (793)
Q Consensus 642 sv~fSpdg-~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~----~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg 716 (793)
++.+-... ..+++...-+.-.+++...+..+..+...... ...+..+.+.|.+. +.+++..|+.| +++|..+|
T Consensus 444 svd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~-~~~~~hed~~I-r~~dn~~~ 521 (577)
T KOG0642|consen 444 SVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTAD-ITFTAHEDRSI-RFFDNKTG 521 (577)
T ss_pred eEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCC-eeEecccCCce-eccccccc
Confidence 56665433 22222222333334444444443333321111 13445667788886 99999999999 99999999
Q ss_pred cEEEeeeecCCCCCccceeeeccCCccccCCccEEEEEEcCCCCceeeEeeEEEeCCCcEEEEcCCCCCC
Q 003822 717 RRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKSEIVKVNLLASTDHCDKECSHGQHSR 786 (793)
Q Consensus 717 ~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~~~~iv~~~ltaS~Dg~VkvW~~~~~~~ 786 (793)
+.+. .... |-..|.++++.|. +..++ +++.||.|++|+.+.+.+
T Consensus 522 ~~l~--s~~a-------------------~~~svtslai~~n-g~~l~----s~s~d~sv~l~kld~k~~ 565 (577)
T KOG0642|consen 522 KILH--SMVA-------------------HKDSVTSLAIDPN-GPYLM----SGSHDGSVRLWKLDVKTC 565 (577)
T ss_pred ccch--heee-------------------ccceecceeecCC-CceEE----eecCCceeehhhccchhe
Confidence 9987 3333 3357899999995 34444 899999999999977653
No 188
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.53 E-value=1.7e-12 Score=135.72 Aligned_cols=254 Identities=14% Similarity=0.206 Sum_probs=171.6
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcc
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSI 535 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~ 535 (793)
++-++||+ .-..+|++..|..|++|+-.. .....++. .....|++++|-|..+..|+.|+.. -|.+|.....-..-
T Consensus 101 lr~~aWhq-H~~~fava~nddvVriy~kss-t~pt~Lks-~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln~~ 176 (445)
T KOG2139|consen 101 LRGVAWHQ-HIIAFAVATNDDVVRIYDKSS-TCPTKLKS-VSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNAN 176 (445)
T ss_pred eeeEeech-hhhhhhhhccCcEEEEeccCC-CCCceecc-hhhcceeEEEeccCCcceeeeeecc-eeEEEEcCcccccc
Confidence 77899999 666788999999999999765 44455543 3456899999987777888888876 48999876532211
Q ss_pred cc----cccCCceeEecCCCCeEEEEEccCCCEEEEEEC-CCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEE
Q 003822 536 RG----MHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY-SKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFA 610 (793)
Q Consensus 536 ~~----~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~-Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~La 610 (793)
+. ...+........+.+|+++.|++++..+++++. |..|.|||..++..+.... -..+.+.-+.|+|++ .+|+
T Consensus 177 r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~-~glgg~slLkwSPdg-d~lf 254 (445)
T KOG2139|consen 177 RNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIP-KGLGGFSLLKWSPDG-DVLF 254 (445)
T ss_pred cccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccc-cCCCceeeEEEcCCC-CEEE
Confidence 11 122333344556688999999999999999884 7999999999988766554 255778899999999 7888
Q ss_pred EEeCCCeEEEEECCC-CCccceEEccCCCCeEEEEEecCCCEEEEEeCCCeEEEEEcCCC-c-----------E---EEE
Q 003822 611 TSSFDQDVKLWDLRQ-KPIQPCYTASSSKGNVMVCFSPDDHYLLVSAVDNEVRQLLAVDG-R-----------V---HLN 674 (793)
Q Consensus 611 Tgs~Dg~IrIWDlrt-~~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg-~-----------~---~~~ 674 (793)
+++.|+..++|.... ....+-...++ .+...+|+|+|++|+-+.. |.-++|.+... + . +..
T Consensus 255 aAt~davfrlw~e~q~wt~erw~lgsg--rvqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~~k~~lliaD 331 (445)
T KOG2139|consen 255 AATCDAVFRLWQENQSWTKERWILGSG--RVQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQSIKRVLLIAD 331 (445)
T ss_pred EecccceeeeehhcccceecceeccCC--ceeeeeecCCCCEEEEEEc-CCceEEEEeecCCCccccCcccceeeeeecc
Confidence 899999999995443 32222222222 4556899999998876653 33445543211 0 0 000
Q ss_pred Eee--ecCC----CCCcEEEEEeeCCCeEEEEEeCCCc-------EEEEEEcCCCcEE
Q 003822 675 FGI--TATG----SSQNYTRSYYLNGRDYIVSGSCDEH-------VVRICCAQTGRRL 719 (793)
Q Consensus 675 l~~--~~~~----~~~v~s~afspdg~~~L~Sgs~Dg~-------II~IWDv~tg~~l 719 (793)
+.. ...+ ....-.++|.|.|. |+++.-..+. .|.+||....-.+
T Consensus 332 L~e~ti~ag~~l~cgeaq~lawDpsGe-yLav~fKg~~~v~~~k~~i~~fdtr~sp~v 388 (445)
T KOG2139|consen 332 LQEVTICAGQRLCCGEAQCLAWDPSGE-YLAVIFKGQSFVLLCKLHISRFDTRKSPPV 388 (445)
T ss_pred chhhhhhcCcccccCccceeeECCCCC-EEEEEEcCCchhhhhhhhhhhhcccccCce
Confidence 000 0011 34567889999999 8877554433 1266776554433
No 189
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.52 E-value=3.4e-12 Score=134.07 Aligned_cols=236 Identities=17% Similarity=0.202 Sum_probs=171.0
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcC--CcEEEEEcCCCCC
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDN--GSLKLYDIRHMPP 533 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~D--gtV~vWDl~~~~~ 533 (793)
+..+.|+. +...|..|+.|| .++|+.+.-....... .....|..+-|+ ..++|..+.+ +.+++.+++.+..
T Consensus 8 i~~~~~Nq-d~~~lsvGs~~G-yk~~~~~~~~k~~~~~--~~~~~IvEmLFS---SSLvaiV~~~qpr~Lkv~~~Kk~~~ 80 (391)
T KOG2110|consen 8 INFIGFNQ-DSTLLSVGSKDG-YKIFSCSPFEKCFSKD--TEGVSIVEMLFS---SSLVAIVSIKQPRKLKVVHFKKKTT 80 (391)
T ss_pred eeeeeecc-ceeEEEccCCCc-eeEEecCchHHhhccc--CCCeEEEEeecc---cceeEEEecCCCceEEEEEcccCce
Confidence 56677887 888999999998 6777766433311111 122346666664 4566666554 3488888876443
Q ss_pred cccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcc--cCCCCeEEEEEcCCCCcEEEE
Q 003822 534 SIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFAD--MHKEHINVVKFSNHSPSIFAT 611 (793)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~--gh~~~V~sv~fspdg~~~LaT 611 (793)
.....-..+|.+|.+ +-+.+++.-. ..|+|||+++.+.+.++.. .+...+.++.+++.+ .++|-
T Consensus 81 ----------ICe~~fpt~IL~Vrm--Nr~RLvV~Le-e~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n-~ylAy 146 (391)
T KOG2110|consen 81 ----------ICEIFFPTSILAVRM--NRKRLVVCLE-ESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNAN-CYLAY 146 (391)
T ss_pred ----------EEEEecCCceEEEEE--ccceEEEEEc-ccEEEEecccceeehhhhccCCCccceEeeccCCCC-ceEEe
Confidence 222333466888888 3445555543 3499999999999998874 255567777777666 56664
Q ss_pred Ee--CCCeEEEEECCCCCccceEEccCCCCeEE-EEEecCCCEEEEEeCCCe-EEEEEcCCCcEEEEEeeecCCCCCcEE
Q 003822 612 SS--FDQDVKLWDLRQKPIQPCYTASSSKGNVM-VCFSPDDHYLLVSAVDNE-VRQLLAVDGRVHLNFGITATGSSQNYT 687 (793)
Q Consensus 612 gs--~Dg~IrIWDlrt~~~~~~~~l~~~~~~vs-v~fSpdg~~Lasgs~Dg~-I~IwDl~tg~~~~~l~~~~~~~~~v~s 687 (793)
-+ ..|.|.+||+.+- +++..+..|.+.+. ++|+|+|.+||+++..|+ ||||.+.+|+.+.+|..... ...+++
T Consensus 147 p~s~t~GdV~l~d~~nl--~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~-~~~IyS 223 (391)
T KOG2110|consen 147 PGSTTSGDVVLFDTINL--QPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTY-PVSIYS 223 (391)
T ss_pred cCCCCCceEEEEEcccc--eeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCce-eeEEEE
Confidence 32 3688999999876 56667778888885 999999999999999886 59999999999999874222 456889
Q ss_pred EEEeeCCCeEEEEEeCCCcEEEEEEcCCCc
Q 003822 688 RSYYLNGRDYIVSGSCDEHVVRICCAQTGR 717 (793)
Q Consensus 688 ~afspdg~~~L~Sgs~Dg~II~IWDv~tg~ 717 (793)
++|+|+++ +|++.|..++| +||.+....
T Consensus 224 L~Fs~ds~-~L~~sS~TeTV-HiFKL~~~~ 251 (391)
T KOG2110|consen 224 LSFSPDSQ-FLAASSNTETV-HIFKLEKVS 251 (391)
T ss_pred EEECCCCC-eEEEecCCCeE-EEEEecccc
Confidence 99999999 99999999999 999987644
No 190
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.51 E-value=2.9e-11 Score=127.13 Aligned_cols=193 Identities=18% Similarity=0.260 Sum_probs=148.3
Q ss_pred eEEEEEeCCCCCEEEEEeCCC--eEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCC
Q 003822 456 PRQFEYHPSISCLMVFGTLDG--EIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPP 533 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG--~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~ 533 (793)
|--+-|+. .++|..+.+. .+++++..++..+..+.. ...|.+|.+. .+.|+++-.+ .|.|||+++.+.
T Consensus 49 IvEmLFSS---SLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~f---pt~IL~VrmN---r~RLvV~Lee-~IyIydI~~Mkl 118 (391)
T KOG2110|consen 49 IVEMLFSS---SLVAIVSIKQPRKLKVVHFKKKTTICEIFF---PTSILAVRMN---RKRLVVCLEE-SIYIYDIKDMKL 118 (391)
T ss_pred EEEeeccc---ceeEEEecCCCceEEEEEcccCceEEEEec---CCceEEEEEc---cceEEEEEcc-cEEEEeccccee
Confidence 56666776 6777766554 499999999888888754 4689999974 4677777665 499999999765
Q ss_pred cccccccCCceeEecCCCCeEEEEEccCCCEEEEEE--CCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEE
Q 003822 534 SIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASG--YSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFAT 611 (793)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g--~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaT 611 (793)
.-. +.. ...+...+.++.+++.+.+++.=+ ..|.|.+||..+-+++..+. +|.+.+.+++|+++| .+|||
T Consensus 119 LhT-I~t-----~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~-aH~~~lAalafs~~G-~llAT 190 (391)
T KOG2110|consen 119 LHT-IET-----TPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTIN-AHKGPLAALAFSPDG-TLLAT 190 (391)
T ss_pred ehh-hhc-----cCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEE-ecCCceeEEEECCCC-CEEEE
Confidence 211 110 112334577777766666777655 36999999999999999999 799999999999999 89999
Q ss_pred EeCCCe-EEEEECCCCCccceEEccCCCC---eEEEEEecCCCEEEEEeCCCeEEEEEcCC
Q 003822 612 SSFDQD-VKLWDLRQKPIQPCYTASSSKG---NVMVCFSPDDHYLLVSAVDNEVRQLLAVD 668 (793)
Q Consensus 612 gs~Dg~-IrIWDlrt~~~~~~~~l~~~~~---~vsv~fSpdg~~Lasgs~Dg~I~IwDl~t 668 (793)
+|..|+ ||||.+.+++ .++.+..... +.+++|+|++++|++.+..++|++|.+.+
T Consensus 191 ASeKGTVIRVf~v~~G~--kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 191 ASEKGTVIRVFSVPEGQ--KLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEK 249 (391)
T ss_pred eccCceEEEEEEcCCcc--EeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecc
Confidence 999998 8999998884 4455443332 33699999999999999999999998754
No 191
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.51 E-value=6.5e-13 Score=146.92 Aligned_cols=232 Identities=13% Similarity=0.169 Sum_probs=175.6
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcc
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSI 535 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~ 535 (793)
|+|++|+. +|+.+|+|+.|..|.+|+.. ....++. .|.+.|.|+.|. |-...|++++-. ..-+|..+....
T Consensus 56 VycVAys~-dGkrFASG~aDK~VI~W~~k---lEG~LkY-SH~D~IQCMsFN-P~~h~LasCsLs-dFglWS~~qK~V-- 126 (1081)
T KOG1538|consen 56 VYCVAYAK-DGKRFASGSADKSVIIWTSK---LEGILKY-SHNDAIQCMSFN-PITHQLASCSLS-DFGLWSPEQKSV-- 126 (1081)
T ss_pred EEEEEEcc-CCceeccCCCceeEEEeccc---ccceeee-ccCCeeeEeecC-chHHHhhhcchh-hccccChhhhhH--
Confidence 99999999 99999999999999999854 3333443 799999999998 567788888864 467888765322
Q ss_pred cccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEc--ccCCCCeEEEEEcCCCC----cEE
Q 003822 536 RGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFA--DMHKEHINVVKFSNHSP----SIF 609 (793)
Q Consensus 536 ~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~--~gh~~~V~sv~fspdg~----~~L 609 (793)
..+.....+.+.+|..++.+++.|-.+|+|.+-+.. |++...+. +|...+|++++|+|..+ ..+
T Consensus 127 ---------~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~-gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~ 196 (1081)
T KOG1538|consen 127 ---------SKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKN-GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDIL 196 (1081)
T ss_pred ---------HhhhhheeEEEeeecCCCcEEEEeccCceEEeecCC-CCcceEEeCCCCCCCCceEEEecCCCCCCccceE
Confidence 112222568899998888888888899999998654 44333333 46788999999999753 467
Q ss_pred EEEeCCCeEEEEECCCCCccceEEccCCCCeEEEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEE
Q 003822 610 ATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNYTRS 689 (793)
Q Consensus 610 aTgs~Dg~IrIWDlrt~~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~a 689 (793)
++.....++.+|.+..........+ .-.+.++.+.|+|.+++.|+.|+.+++|- +.|-.+.++. .....+++++
T Consensus 197 aV~DW~qTLSFy~LsG~~Igk~r~L--~FdP~CisYf~NGEy~LiGGsdk~L~~fT-R~GvrLGTvg---~~D~WIWtV~ 270 (1081)
T KOG1538|consen 197 AVADWGQTLSFYQLSGKQIGKDRAL--NFDPCCISYFTNGEYILLGGSDKQLSLFT-RDGVRLGTVG---EQDSWIWTVQ 270 (1081)
T ss_pred EEEeccceeEEEEecceeecccccC--CCCchhheeccCCcEEEEccCCCceEEEe-ecCeEEeecc---ccceeEEEEE
Confidence 7777777888887765322211221 22456799999999999999999999986 5666655553 3557899999
Q ss_pred EeeCCCeEEEEEeCCCcEEEEEEcC
Q 003822 690 YYLNGRDYIVSGSCDEHVVRICCAQ 714 (793)
Q Consensus 690 fspdg~~~L~Sgs~Dg~II~IWDv~ 714 (793)
..|+++ +++.|..||++ -.|++.
T Consensus 271 ~~PNsQ-~v~~GCqDGTi-ACyNl~ 293 (1081)
T KOG1538|consen 271 AKPNSQ-YVVVGCQDGTI-ACYNLI 293 (1081)
T ss_pred EccCCc-eEEEEEccCee-ehhhhH
Confidence 999999 99999999999 888874
No 192
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.50 E-value=5.2e-13 Score=138.77 Aligned_cols=197 Identities=16% Similarity=0.168 Sum_probs=153.4
Q ss_pred CEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCC-CCcEEEEEeCCCeEEEEECCCCCccceEEccCCCCe-
Q 003822 563 ELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNH-SPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGN- 640 (793)
Q Consensus 563 ~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspd-g~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~~~~- 640 (793)
..++++-+.|.|++||..+++.+..|+ ++...++.+.|... +++.+.+|+.||+||+||+|+....+.+....+.+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk-~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~ 119 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFK-GPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTP 119 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheec-CCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCc
Confidence 345666689999999999999999999 79999999999874 678999999999999999999876766666666533
Q ss_pred -EEEEEecCCCEEEEEe----CCCeEEEEEcCCCcE-EEEEeeecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcC
Q 003822 641 -VMVCFSPDDHYLLVSA----VDNEVRQLLAVDGRV-HLNFGITATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQ 714 (793)
Q Consensus 641 -vsv~fSpdg~~Lasgs----~Dg~I~IwDl~tg~~-~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~ 714 (793)
++++-.-.++.+++|+ .+-.|.+||++..+. +..+. ..|+..|+.+.|+|.+..+|+|||.||-| .++|+.
T Consensus 120 f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~--eSH~DDVT~lrFHP~~pnlLlSGSvDGLv-nlfD~~ 196 (376)
T KOG1188|consen 120 FICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLN--ESHNDDVTQLRFHPSDPNLLLSGSVDGLV-NLFDTK 196 (376)
T ss_pred ceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhh--hhccCcceeEEecCCCCCeEEeecccceE-EeeecC
Confidence 3344444678888886 366899999998765 55443 46788999999999999899999999999 999987
Q ss_pred CCcEEEeeeecCCCCCccceeeeccCCccccCCccEEEEEEcCCCCceeeEeeEEEeCCCcEEEEcCCCCC
Q 003822 715 TGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKSEIVKVNLLASTDHCDKECSHGQHS 785 (793)
Q Consensus 715 tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~~~~iv~~~ltaS~Dg~VkvW~~~~~~ 785 (793)
....-. .| .+.+ .|..+|..+.|+..+...|. +-+..++..+|+.....
T Consensus 197 ~d~EeD--aL----------~~vi------N~~sSI~~igw~~~~ykrI~----clTH~Etf~~~ele~~~ 245 (376)
T KOG1188|consen 197 KDNEED--AL----------LHVI------NHGSSIHLIGWLSKKYKRIM----CLTHMETFAIYELEDGS 245 (376)
T ss_pred CCcchh--hH----------HHhh------cccceeeeeeeecCCcceEE----EEEccCceeEEEccCCC
Confidence 553221 11 1111 23347999999987766677 88899999999987665
No 193
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.50 E-value=1.6e-12 Score=137.43 Aligned_cols=258 Identities=15% Similarity=0.173 Sum_probs=188.6
Q ss_pred ceEEEEEeCCCC-CEEEEEeCCCeEEEEECCCCeEEEEE----eccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcC
Q 003822 455 RPRQFEYHPSIS-CLMVFGTLDGEIVVVNHENENIVSYI----PSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIR 529 (793)
Q Consensus 455 ~V~~vafsP~d~-~~Lasgs~DG~I~VWd~~t~~~i~~l----~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~ 529 (793)
+++.++|.-... ..++..+.+..+..+.+........+ .....+++|..++.. ...|++|-.+|.+.+|..+
T Consensus 57 ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~---dg~Litc~~sG~l~~~~~k 133 (412)
T KOG3881|consen 57 RISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA---DGTLITCVSSGNLQVRHDK 133 (412)
T ss_pred hhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc---CCEEEEEecCCcEEEEecc
Confidence 477777775322 33444446667777777665554443 223456788888753 3578889999999999998
Q ss_pred CCCCcccccccCCceeEecCCCCeEEEEEccCCCEEEE-EECC--CcEEEEECCCCcEEEEEcccC--------CCCeEE
Q 003822 530 HMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLA-SGYS--KNIALYDINSGRRLQVFADMH--------KEHINV 598 (793)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla-~g~D--g~I~IWDl~tg~~l~~~~~gh--------~~~V~s 598 (793)
.+... ...........++..+.-++....+++ ||.. ..+.+||+...+.+.+-+... .-++++
T Consensus 134 ~~d~h------ss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~td 207 (412)
T KOG3881|consen 134 SGDLH------SSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITD 207 (412)
T ss_pred CCccc------cccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeecc
Confidence 65431 111222333356777777778888877 5556 889999999887666544211 235678
Q ss_pred EEEcCCC-CcEEEEEeCCCeEEEEECCCCCccceEEccCCCCeE-EEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEE-E
Q 003822 599 VKFSNHS-PSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLN-F 675 (793)
Q Consensus 599 v~fspdg-~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~~~~v-sv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~-l 675 (793)
+.|-+.. +..|||++.-+.+|+||.+.+ ..|+..+.-...++ ++...|+|++|++|..-|.+..||.+.++.+.. +
T Consensus 208 i~Fl~g~~~~~fat~T~~hqvR~YDt~~q-RRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~ 286 (412)
T KOG3881|consen 208 IRFLEGSPNYKFATITRYHQVRLYDTRHQ-RRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGL 286 (412)
T ss_pred ceecCCCCCceEEEEecceeEEEecCccc-CcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeecccc
Confidence 8998761 279999999999999999964 46777776656665 499999999999999999999999999998766 4
Q ss_pred eeecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCC
Q 003822 676 GITATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRLRDISLEGK 727 (793)
Q Consensus 676 ~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh 727 (793)
. ...+.+.++..+|.++ +++++|-|..+ ||+|+++.+++.++.++.+
T Consensus 287 k---g~tGsirsih~hp~~~-~las~GLDRyv-RIhD~ktrkll~kvYvKs~ 333 (412)
T KOG3881|consen 287 K---GITGSIRSIHCHPTHP-VLASCGLDRYV-RIHDIKTRKLLHKVYVKSR 333 (412)
T ss_pred C---CccCCcceEEEcCCCc-eEEeeccceeE-EEeecccchhhhhhhhhcc
Confidence 3 3456788899999998 99999999999 9999999888875555554
No 194
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.50 E-value=7.8e-14 Score=157.79 Aligned_cols=243 Identities=14% Similarity=0.130 Sum_probs=185.2
Q ss_pred ceEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCc
Q 003822 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS 534 (793)
Q Consensus 455 ~V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~ 534 (793)
+|+|+.|.. .+.++++|+.|..|+||..+++.+....+ ||.+.|+.++.+ .+..++++++.|..|++|.+..+...
T Consensus 192 aVyca~fDr-tg~~Iitgsdd~lvKiwS~et~~~lAs~r--Ghs~ditdlavs-~~n~~iaaaS~D~vIrvWrl~~~~pv 267 (1113)
T KOG0644|consen 192 AVYCAIFDR-TGRYIITGSDDRLVKIWSMETARCLASCR--GHSGDITDLAVS-SNNTMIAAASNDKVIRVWRLPDGAPV 267 (1113)
T ss_pred heeeeeecc-ccceEeecCccceeeeeeccchhhhccCC--CCccccchhccc-hhhhhhhhcccCceEEEEecCCCchH
Confidence 499999999 99999999999999999999999988887 999999999975 56678899999999999999987652
Q ss_pred ccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEE----cccCCCCeEEEEEcCCCCcEEE
Q 003822 535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVF----ADMHKEHINVVKFSNHSPSIFA 610 (793)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~----~~gh~~~V~sv~fspdg~~~La 610 (793)
.+.+.|.+.|++++|+|-- +++.||++++||.+ ..++... ......-+-++.|...+ .-++
T Consensus 268 ---------svLrghtgavtaiafsP~~----sss~dgt~~~wd~r-~~~~~y~prp~~~~~~~~~~s~~~~~~~-~~f~ 332 (1113)
T KOG0644|consen 268 ---------SVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDAR-LEPRIYVPRPLKFTEKDLVDSILFENNG-DRFL 332 (1113)
T ss_pred ---------HHHhccccceeeeccCccc----cCCCCCceEecccc-ccccccCCCCCCcccccceeeeeccccc-cccc
Confidence 3345677889999998765 66789999999998 2221111 11123556677787777 7899
Q ss_pred EEeCCCeEEEEECCCCCccceEEccCCCCeEEEEEecCC-CEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEE
Q 003822 611 TSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDD-HYLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNYTRS 689 (793)
Q Consensus 611 Tgs~Dg~IrIWDlrt~~~~~~~~l~~~~~~vsv~fSpdg-~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~a 689 (793)
||+.|+.-..|....-..... ..+-+.++.+- .+.+++-.+-.+.+|++.+|.+.+... .+...++.+.
T Consensus 333 Tgs~d~ea~n~e~~~l~~~~~-------~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~---ghsd~~yvLd 402 (1113)
T KOG0644|consen 333 TGSRDGEARNHEFEQLAWRSN-------LLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLM---GHSDEVYVLD 402 (1113)
T ss_pred cccCCcccccchhhHhhhhcc-------ceEEEeccccccccceeeeeeeEeeeeecccchhhhhhc---ccccceeeee
Confidence 999999988887654211111 11112333222 455666678889999999998877664 4667788999
Q ss_pred EeeCCCeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCC
Q 003822 690 YYLNGRDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKG 728 (793)
Q Consensus 690 fspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~ 728 (793)
++|-+.....+++.||.. .|||+..|-.++.+. .||.
T Consensus 403 ~Hpfn~ri~msag~dgst-~iwdi~eg~pik~y~-~gh~ 439 (1113)
T KOG0644|consen 403 VHPFNPRIAMSAGYDGST-IIWDIWEGIPIKHYF-IGHG 439 (1113)
T ss_pred ecCCCcHhhhhccCCCce-EeeecccCCcceeee-cccc
Confidence 999888788899999999 999999998888433 4443
No 195
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.49 E-value=1.9e-12 Score=150.00 Aligned_cols=248 Identities=15% Similarity=0.188 Sum_probs=167.8
Q ss_pred ceEEEEEeC-CCCCEEEEEeCCCeEEEEECC-----CCeEEEEEec-----cCCCCCEEEEEEeeCCCCEEEEEEcCCcE
Q 003822 455 RPRQFEYHP-SISCLMVFGTLDGEIVVVNHE-----NENIVSYIPS-----FGAMNSVLGLCWLKKYPSKLIAGSDNGSL 523 (793)
Q Consensus 455 ~V~~vafsP-~d~~~Lasgs~DG~I~VWd~~-----t~~~i~~l~~-----~~h~~~V~sv~fs~~~g~~Lasgs~DgtV 523 (793)
+|+.+.+-. .|..++++|+.||.|+||+-. +.+.+..+.. .+..+.-.-+.|....| +|+++|.-..|
T Consensus 1111 ~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G-~Ll~tGd~r~I 1189 (1387)
T KOG1517|consen 1111 RVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSG-HLLVTGDVRSI 1189 (1387)
T ss_pred ccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCC-eEEecCCeeEE
Confidence 478887755 467789999999999999742 2233332221 11122224467863344 55555557899
Q ss_pred EEEEcCCCCCcccccccCCceeEecCCCCeEEEEEccCC-CEEEEEECCCcEEEEECCCCc---EEEEEcccCCCC--eE
Q 003822 524 KLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMD-ELFLASGYSKNIALYDINSGR---RLQVFADMHKEH--IN 597 (793)
Q Consensus 524 ~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~-~~lla~g~Dg~I~IWDl~tg~---~l~~~~~gh~~~--V~ 597 (793)
+|||.......... .+....-|+++.-+... +.+++|-.||.|++||.+... .+...+ .|+.. |.
T Consensus 1190 RIWDa~~E~~~~di--------P~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R-~h~~~~~Iv 1260 (1387)
T KOG1517|consen 1190 RIWDAHKEQVVADI--------PYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYR-EHNDVEPIV 1260 (1387)
T ss_pred EEEecccceeEeec--------ccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeec-ccCCcccce
Confidence 99999886542211 12222446666655444 556666689999999998643 455666 58887 99
Q ss_pred EEEEcCCCCcEEEEEeCCCeEEEEECCCCCccceEEccCCC--C--eEEEEEecCCCEEEEEeCCCeEEEEEcCCCcEEE
Q 003822 598 VVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSK--G--NVMVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHL 673 (793)
Q Consensus 598 sv~fspdg~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~~--~--~vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~ 673 (793)
.+.+.+.|-..+++|+.||.|++||+|............+. + .+++..+++...+|+|+. +.|+||++. |+.+.
T Consensus 1261 ~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~-G~~l~ 1338 (1387)
T KOG1517|consen 1261 HLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLS-GEQLN 1338 (1387)
T ss_pred eEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecC-hhhhc
Confidence 99999988556999999999999999985323333333322 3 456999999999999998 999999976 43333
Q ss_pred EEeeec----CCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCC
Q 003822 674 NFGITA----TGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTG 716 (793)
Q Consensus 674 ~l~~~~----~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg 716 (793)
.+...+ .....+.+++|+|-.- .+++|+.|.+| .||....+
T Consensus 1339 ~~k~n~~F~~q~~gs~scL~FHP~~~-llAaG~~Ds~V-~iYs~~k~ 1383 (1387)
T KOG1517|consen 1339 IIKYNPGFMGQRIGSVSCLAFHPHRL-LLAAGSADSTV-SIYSCEKP 1383 (1387)
T ss_pred ccccCcccccCcCCCcceeeecchhH-hhhhccCCceE-EEeecCCc
Confidence 333211 1223567889999887 89999999999 99976544
No 196
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.49 E-value=1e-11 Score=142.63 Aligned_cols=259 Identities=13% Similarity=0.143 Sum_probs=187.7
Q ss_pred EEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCC--CEEEEEEcCCcEEEEEcCCCCCccc-
Q 003822 460 EYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYP--SKLIAGSDNGSLKLYDIRHMPPSIR- 536 (793)
Q Consensus 460 afsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g--~~Lasgs~DgtV~vWDl~~~~~~~~- 536 (793)
.|++ |++.++... +..|.||...+|.++..+. +|..++..+.+.+... .++++++.||+|++||...+.....
T Consensus 23 vfSn-D~k~l~~~~-~~~V~VyS~~Tg~~i~~l~--~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~ 98 (792)
T KOG1963|consen 23 VFSN-DAKFLFLCT-GNFVKVYSTATGECITSLE--DHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTF 98 (792)
T ss_pred cccc-CCcEEEEee-CCEEEEEecchHhhhhhcc--cccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEE
Confidence 4777 777776665 5689999999999998766 8999999999886555 5788999999999999874331000
Q ss_pred ----------------c------c-----------------------------------ccC--Cc--------------
Q 003822 537 ----------------G------M-----------------------------------HYG--AG-------------- 543 (793)
Q Consensus 537 ----------------~------~-----------------------------------~~~--~~-------------- 543 (793)
. . ..+ ..
T Consensus 99 ~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~ 178 (792)
T KOG1963|consen 99 DNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIV 178 (792)
T ss_pred ecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEE
Confidence 0 0 000 00
Q ss_pred --------------------eeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCC----CcEEEEEcccCCCCeEEE
Q 003822 544 --------------------TVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINS----GRRLQVFADMHKEHINVV 599 (793)
Q Consensus 544 --------------------~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~t----g~~l~~~~~gh~~~V~sv 599 (793)
.....|.-.+++.+++|.+.+++++..||.|.+|.--. ......+.. |...|+++
T Consensus 179 ~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHW-H~~~V~~L 257 (792)
T KOG1963|consen 179 HMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHW-HHDEVNSL 257 (792)
T ss_pred EeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEe-ccccccee
Confidence 00011223468899999999999998999999996432 223455665 88999999
Q ss_pred EEcCCCCcEEEEEeCCCeEEEEECCCCCccceEEccCCCCeEEEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeec
Q 003822 600 KFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITA 679 (793)
Q Consensus 600 ~fspdg~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~ 679 (793)
+|+++| .+|++|+..|.+.+|.+.+++. .+-..-...+..+.+|||+.+.+....|+.|.+....+.....++.+..
T Consensus 258 ~fS~~G-~~LlSGG~E~VLv~Wq~~T~~k--qfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~ 334 (792)
T KOG1963|consen 258 SFSSDG-AYLLSGGREGVLVLWQLETGKK--QFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIK 334 (792)
T ss_pred EEecCC-ceEeecccceEEEEEeecCCCc--ccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCcc
Confidence 999999 8999999999999999999862 2322233345569999999999999999999999887765544443321
Q ss_pred CC--------CCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCC
Q 003822 680 TG--------SSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKG 728 (793)
Q Consensus 680 ~~--------~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~ 728 (793)
.. ..-...+++.|.-+ .++-.+..|.| .+||+.+.+.+.++...+++
T Consensus 335 ~~~~~~k~~~~~l~t~~~idpr~~-~~vln~~~g~v-Q~ydl~td~~i~~~~v~~~n 389 (792)
T KOG1963|consen 335 PPTPSTKTRPQSLTTGVSIDPRTN-SLVLNGHPGHV-QFYDLYTDSTIYKLQVCDEN 389 (792)
T ss_pred CCCccccccccccceeEEEcCCCC-ceeecCCCceE-EEEeccccceeeeEEEEeec
Confidence 11 33455677888444 56777788999 99999998888765555443
No 197
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.49 E-value=1.5e-12 Score=136.61 Aligned_cols=263 Identities=11% Similarity=0.060 Sum_probs=178.9
Q ss_pred cCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcE
Q 003822 495 FGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNI 574 (793)
Q Consensus 495 ~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I 574 (793)
.+|.+.|.++.|+ .++++|++|+.|..+++|+++..-. .......+.....|.+.|.|++|+..+..+++|+.+++|
T Consensus 53 ~~H~GCiNAlqFS-~N~~~L~SGGDD~~~~~W~~de~~~--~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~V 129 (609)
T KOG4227|consen 53 REHTGCINALQFS-HNDRFLASGGDDMHGRVWNVDELMV--RKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTV 129 (609)
T ss_pred hhhccccceeeec-cCCeEEeecCCcceeeeechHHHHh--hcCCCCceeccCccccceEEEEEccCCeeEecCCCccee
Confidence 3899999999998 7799999999999999999875211 111111122233445789999998888888888999999
Q ss_pred EEEECCCCcEEEEEcc-cCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEECCCCC-c-cceEEccCCCCeEEEEEecC-CC
Q 003822 575 ALYDINSGRRLQVFAD-MHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKP-I-QPCYTASSSKGNVMVCFSPD-DH 650 (793)
Q Consensus 575 ~IWDl~tg~~l~~~~~-gh~~~V~sv~fspdg~~~LaTgs~Dg~IrIWDlrt~~-~-~~~~~l~~~~~~vsv~fSpd-g~ 650 (793)
...|+++.+.+..+.. ...+.|+.+..+|.. +.|++.+.++.|.+||.+..+ . .++..........++.|+|. ..
T Consensus 130 I~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~D-N~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~ 208 (609)
T KOG4227|consen 130 IKHDIETKQSIYVANENNNRGDVYHMDQHPTD-NTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPA 208 (609)
T ss_pred EeeecccceeeeeecccCcccceeecccCCCC-ceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCce
Confidence 9999999999988861 123499999999997 899999999999999999754 2 22222223334446899995 46
Q ss_pred EEEEEeCCCeEEEEEcCCCcE-EEEEee---ecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEEeeeecC
Q 003822 651 YLLVSAVDNEVRQLLAVDGRV-HLNFGI---TATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRLRDISLEG 726 (793)
Q Consensus 651 ~Lasgs~Dg~I~IwDl~tg~~-~~~l~~---~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~g 726 (793)
.|++++..+-+-+||.+.... +..... .+.....-....|+|.|. .+++--....- .+||+.+.++. +++.
T Consensus 209 Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~-Q~msiRR~~~P-~~~D~~S~R~~---V~k~ 283 (609)
T KOG4227|consen 209 LILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGN-QFMSIRRGKCP-LYFDFISQRCF---VLKS 283 (609)
T ss_pred eEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCC-eehhhhccCCC-EEeeeecccce---eEec
Confidence 677888888899999876432 211111 111122235678999998 45544333333 47787765543 2222
Q ss_pred -CCCCccceeeeccCCccccCCc-cEEEEEEcCCCCceeeEeeEEEeCCCcEEEEcCCCCC
Q 003822 727 -KGSGTSMFVQSLRGDPFRDFNM-SILAAYTRPSSKSEIVKVNLLASTDHCDKECSHGQHS 785 (793)
Q Consensus 727 -h~~~~s~~v~sl~g~~~~~h~~-~V~sva~~P~~~~~iv~~~ltaS~Dg~VkvW~~~~~~ 785 (793)
|+ |...++. .+-++.|-.+ ..++ +||.+=.+.+|.++...
T Consensus 284 D~N-------------~~GY~N~~T~KS~~F~~D--~~v~----tGSD~~~i~~WklP~~~ 325 (609)
T KOG4227|consen 284 DHN-------------PNGYCNIKTIKSMTFIDD--YTVA----TGSDHWGIHIWKLPRAN 325 (609)
T ss_pred cCC-------------CCcceeeeeeeeeeeecc--eeee----ccCcccceEEEecCCCc
Confidence 22 1011111 4556666654 2355 88999999999987654
No 198
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.47 E-value=4.7e-13 Score=134.77 Aligned_cols=246 Identities=13% Similarity=0.139 Sum_probs=175.3
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCc-
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS- 534 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~- 534 (793)
|+++.|.. ++ +|.+|..-|.|.+|++.+......+.. .|...|+.+.-. + +..+.+-+.|+.+.+|++......
T Consensus 17 v~s~~fqa-~~-rL~sg~~~G~V~~w~lqt~r~~~~~r~-~g~~~it~lq~~-p-~d~l~tqgRd~~L~lw~ia~s~~i~ 91 (323)
T KOG0322|consen 17 VTSVLFQA-NE-RLMSGLSVGIVKMWVLQTERDLPLIRL-FGRLFITNLQSI-P-NDSLDTQGRDPLLILWTIAYSAFIS 91 (323)
T ss_pred heehhhcc-ch-hhhcccccceEEEEEeecCccchhhhh-hccceeeceeec-C-CcchhhcCCCceEEEEEccCcceEE
Confidence 78888887 43 599999999999999998887777764 456788888854 3 367889999999999998752210
Q ss_pred -------------cc----------ccccCC--------------ceeE------ecCCCCeEEEEEccC--CCEEEEEE
Q 003822 535 -------------IR----------GMHYGA--------------GTVT------FDEFDQLTSVHVNSM--DELFLASG 569 (793)
Q Consensus 535 -------------~~----------~~~~~~--------------~~~~------~~~~~~V~sv~~s~~--~~~lla~g 569 (793)
.. ....+. ..+. ....+.+.+..+... ...++.+|
T Consensus 92 i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaG 171 (323)
T KOG0322|consen 92 IHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAG 171 (323)
T ss_pred EeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEe
Confidence 00 000000 0000 011234555553222 23455566
Q ss_pred -CCCcEEEEECCCCcEEEEEc---------ccCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEECCCC--Cc--cceEEcc
Q 003822 570 -YSKNIALYDINSGRRLQVFA---------DMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQK--PI--QPCYTAS 635 (793)
Q Consensus 570 -~Dg~I~IWDl~tg~~l~~~~---------~gh~~~V~sv~fspdg~~~LaTgs~Dg~IrIWDlrt~--~~--~~~~~l~ 635 (793)
.+|.+.+||+.++..+..++ ..|..+|.++.|.+.- ..=++|+.+..+..|.+... .. ....++
T Consensus 172 yEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~-~rGisgga~dkl~~~Sl~~s~gslq~~~e~~l- 249 (323)
T KOG0322|consen 172 YESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSC-DRGISGGADDKLVMYSLNHSTGSLQIRKEITL- 249 (323)
T ss_pred ccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhh-cCCcCCCccccceeeeeccccCcccccceEEe-
Confidence 58999999999984443332 1489999999998765 45567777888999988653 11 112222
Q ss_pred CCCCeEEEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEc
Q 003822 636 SSKGNVMVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCA 713 (793)
Q Consensus 636 ~~~~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv 713 (793)
.+.++..+..-||++.+|+++.|++||||..++.+++..++. |...+..++|+|+.. .+|++|.|++| .+|++
T Consensus 250 knpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLky---Hsagvn~vAfspd~~-lmAaaskD~rI-SLWkL 322 (323)
T KOG0322|consen 250 KNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKY---HSAGVNAVAFSPDCE-LMAAASKDARI-SLWKL 322 (323)
T ss_pred cCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhh---hhcceeEEEeCCCCc-hhhhccCCceE-Eeeec
Confidence 233444588899999999999999999999999999887764 567899999999977 99999999999 99986
No 199
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.47 E-value=2.6e-13 Score=145.50 Aligned_cols=229 Identities=14% Similarity=0.212 Sum_probs=183.4
Q ss_pred ceEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCc
Q 003822 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS 534 (793)
Q Consensus 455 ~V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~ 534 (793)
-++.+.++. +|..|+.|+..|.|..+|+.+++....+.. ...|.++.|. .+.+++|++ ....+.|||-...+
T Consensus 131 GPY~~~ytr-nGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v---~Etv~Dv~~L-Hneq~~AVA-QK~y~yvYD~~GtE-- 202 (545)
T KOG1272|consen 131 GPYHLDYTR-NGRHLLLGGRKGHLAAFDWVTKKLHFEINV---METVRDVTFL-HNEQFFAVA-QKKYVYVYDNNGTE-- 202 (545)
T ss_pred CCeeeeecC-CccEEEecCCccceeeeecccceeeeeeeh---hhhhhhhhhh-cchHHHHhh-hhceEEEecCCCcE--
Confidence 378899999 999999999999999999999999888853 4679999998 566677666 45689999976532
Q ss_pred ccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeC
Q 003822 535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSF 614 (793)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~ 614 (793)
.........|..+.|-|..-.+++++..|.++.-|+.+|+.+..+. .-.+.+..+.-+|.. -.+-+|..
T Consensus 203 ---------lHClk~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~-t~~G~~~vm~qNP~N-aVih~Ghs 271 (545)
T KOG1272|consen 203 ---------LHCLKRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIR-TGAGRTDVMKQNPYN-AVIHLGHS 271 (545)
T ss_pred ---------EeehhhcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHH-ccCCccchhhcCCcc-ceEEEcCC
Confidence 2234445678889998877777777788999999999999999998 477888899999988 78999999
Q ss_pred CCeEEEEECCCCCccceEEccCCCCeEE-EEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeC
Q 003822 615 DQDVKLWDLRQKPIQPCYTASSSKGNVM-VCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLN 693 (793)
Q Consensus 615 Dg~IrIWDlrt~~~~~~~~l~~~~~~vs-v~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspd 693 (793)
.|+|.+|..... .++..+-.|.+.++ +++.++|+|+++++.|..++|||++.-..+.++.. ......+++|..
T Consensus 272 nGtVSlWSP~sk--ePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t----p~~a~~ls~Sqk 345 (545)
T KOG1272|consen 272 NGTVSLWSPNSK--EPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT----PHPASNLSLSQK 345 (545)
T ss_pred CceEEecCCCCc--chHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec----CCCccccccccc
Confidence 999999999886 45555556777774 99999999999999999999999998876666642 223446677777
Q ss_pred CCeEEEEEeCCCcEEEEEE
Q 003822 694 GRDYIVSGSCDEHVVRICC 712 (793)
Q Consensus 694 g~~~L~Sgs~Dg~II~IWD 712 (793)
| +||.|- ...| .||.
T Consensus 346 g--lLA~~~-G~~v-~iw~ 360 (545)
T KOG1272|consen 346 G--LLALSY-GDHV-QIWK 360 (545)
T ss_pred c--ceeeec-CCee-eeeh
Confidence 6 455544 3467 9994
No 200
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.46 E-value=8.1e-13 Score=145.53 Aligned_cols=214 Identities=16% Similarity=0.197 Sum_probs=167.8
Q ss_pred cCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcccccccCCceeEecCC-CCeEEEEEccCCCEEEEEECCCc
Q 003822 495 FGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEF-DQLTSVHVNSMDELFLASGYSKN 573 (793)
Q Consensus 495 ~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~~~~~~~~~~~~~~~~-~~V~sv~~s~~~~~lla~g~Dg~ 573 (793)
.+|.+.|+.+.|+|....+|++|+.|..|+||.+..+... .+ ....+.+.+. -.|.++.|||..+.+++++..|.
T Consensus 76 ~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q--~L--Sape~~~g~~~~~vE~l~fHpTaDgil~s~a~g~ 151 (1012)
T KOG1445|consen 76 AAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQ--KL--SAPEIDVGGGNVIVECLRFHPTADGILASGAHGS 151 (1012)
T ss_pred ecccceeeccCccccchhhhhcccCCCeeEEEecCCCccc--cc--CCcceeecCCceEEEEeecccCcCceEEeccCce
Confidence 3899999999999888899999999999999999854321 11 1112233333 45889999999999999999999
Q ss_pred EEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEECCCCCccceEEccCCCCeE--EEEEecCCCE
Q 003822 574 IALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV--MVCFSPDDHY 651 (793)
Q Consensus 574 I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~~~~v--sv~fSpdg~~ 651 (793)
++|||+.+++.+..+. +|...|.+..|+.|| .++++++.|..|+|||.|.. ..++....+|.+.. .+.|.-+-..
T Consensus 152 v~i~D~stqk~~~el~-~h~d~vQSa~WseDG-~llatscKdkqirifDPRa~-~~piQ~te~H~~~rdsRv~w~Gn~~r 228 (1012)
T KOG1445|consen 152 VYITDISTQKTAVELS-GHTDKVQSADWSEDG-KLLATSCKDKQIRIFDPRAS-MEPIQTTEGHGGMRDSRVLWAGNWER 228 (1012)
T ss_pred EEEEEcccCceeeccc-CCchhhhccccccCC-ceEeeecCCcceEEeCCccC-CCccccccccccchhheeeeccchhh
Confidence 9999999999999999 799999999999999 89999999999999999984 35566667777665 3888766556
Q ss_pred EEEEeC----CCeEEEEEcCC-CcEEEEEeeecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcE
Q 003822 652 LLVSAV----DNEVRQLLAVD-GRVHLNFGITATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRR 718 (793)
Q Consensus 652 Lasgs~----Dg~I~IwDl~t-g~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~ 718 (793)
|++.+- -..|++||.+. +..+.+++. .....+..-.|.||.+.++++|-.+..+ ..+.+...+.
T Consensus 229 lisTGF~~~R~reV~~~Dtr~f~~p~~tlel--d~stGvLiPl~DpDt~llfLaGKG~~~l-~~lE~~d~qP 297 (1012)
T KOG1445|consen 229 LISTGFTTKRIREVRAYDTRKFGAPVHTLEL--DSSTGVLIPLYDPDTRLLFLAGKGTNKL-FMLEMQDRQP 297 (1012)
T ss_pred hhhcccchhhheeeeeeeccccCCcceeEEe--ecccceEeeeecCCCceEEEecCCcceE-EEEEecCCCc
Confidence 666553 35789999876 345566654 2345677778999999777788778787 8888766543
No 201
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.45 E-value=8.2e-12 Score=133.35 Aligned_cols=200 Identities=15% Similarity=0.122 Sum_probs=145.3
Q ss_pred EEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEECCCCCccceEE
Q 003822 554 TSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYT 633 (793)
Q Consensus 554 ~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~Dg~IrIWDlrt~~~~~~~~ 633 (793)
..++|+.++..+.+++.||++++|+..+...+.... .|.+.|.++.|+||| ++|++-+.| ..+||+.+++......+
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~-~~~~eV~DL~FS~dg-k~lasig~d-~~~VW~~~~g~~~a~~t 224 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEI-AHHAEVKDLDFSPDG-KFLASIGAD-SARVWSVNTGAALARKT 224 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhH-hhcCccccceeCCCC-cEEEEecCC-ceEEEEeccCchhhhcC
Confidence 788999999999999999999999988777777776 599999999999999 899999999 89999999984443333
Q ss_pred ccCCCCeE-EEEEecCC-----CEEEEEeCCCeEEEEEcCCCcEE--EEEeeecCCCCCcEEEEEeeCCCeEEEEEeCCC
Q 003822 634 ASSSKGNV-MVCFSPDD-----HYLLVSAVDNEVRQLLAVDGRVH--LNFGITATGSSQNYTRSYYLNGRDYIVSGSCDE 705 (793)
Q Consensus 634 l~~~~~~v-sv~fSpdg-----~~Lasgs~Dg~I~IwDl~tg~~~--~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg 705 (793)
........ .+.|+.|+ +..+....-+.|+.||+...+.- ............+.+++.+++|+ +++.|+.||
T Consensus 225 ~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGk-f~AlGT~dG 303 (398)
T KOG0771|consen 225 PFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGK-FLALGTMDG 303 (398)
T ss_pred CcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCc-EEEEeccCC
Confidence 22222222 38888776 22333334567777776543221 11111122345788999999999 999999999
Q ss_pred cEEEEEEcCCCcEEEeeeecCCCCCccceeeeccCCccccCCccEEEEEEcCCCCceeeEeeEEEeCCCcEEEEcCCC
Q 003822 706 HVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKSEIVKVNLLASTDHCDKECSHGQ 783 (793)
Q Consensus 706 ~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~~~~iv~~~ltaS~Dg~VkvW~~~~ 783 (793)
.| -|+++.+-++++ .+ . +.|.+.|+++.|+|+.+ ... ..|.|.+..+-.+..
T Consensus 304 sV-ai~~~~~lq~~~--~v-----------k-------~aH~~~VT~ltF~Pdsr-~~~----svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 304 SV-AIYDAKSLQRLQ--YV-----------K-------EAHLGFVTGLTFSPDSR-YLA----SVSSDNEAAVTKLAV 355 (398)
T ss_pred cE-EEEEeceeeeeE--ee-----------h-------hhheeeeeeEEEcCCcC-ccc----ccccCCceeEEEEee
Confidence 99 999999888887 22 1 24556899999999743 333 456666667766555
No 202
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.45 E-value=2.2e-12 Score=129.91 Aligned_cols=244 Identities=12% Similarity=0.097 Sum_probs=166.8
Q ss_pred CCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEE
Q 003822 496 GAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIA 575 (793)
Q Consensus 496 ~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~ 575 (793)
+|.+.|+++.|- ...+|.+|..-|.|++|++.+..... .....+...|+.+...|+ +.+.+-|.|+.+.
T Consensus 12 p~~~~v~s~~fq--a~~rL~sg~~~G~V~~w~lqt~r~~~--------~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~ 80 (323)
T KOG0322|consen 12 PHSSSVTSVLFQ--ANERLMSGLSVGIVKMWVLQTERDLP--------LIRLFGRLFITNLQSIPN-DSLDTQGRDPLLI 80 (323)
T ss_pred cccchheehhhc--cchhhhcccccceEEEEEeecCccch--------hhhhhccceeeceeecCC-cchhhcCCCceEE
Confidence 889999999984 44569999999999999999865421 111123355777776554 7788888999999
Q ss_pred EEECCCCcEEE--------------EEc--------------------------------------ccCCCCeEEEEEcC
Q 003822 576 LYDINSGRRLQ--------------VFA--------------------------------------DMHKEHINVVKFSN 603 (793)
Q Consensus 576 IWDl~tg~~l~--------------~~~--------------------------------------~gh~~~V~sv~fsp 603 (793)
+|++..+..+. .+. .+..+.+.+..+..
T Consensus 81 lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~ 160 (323)
T KOG0322|consen 81 LWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDH 160 (323)
T ss_pred EEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccc
Confidence 99987632211 000 01123444444322
Q ss_pred CC--CcEEEEEeCCCeEEEEECCCCCc--------cceEEccCCC-CeEEEEEecCCCEEEEEeCCCeEEEEEcCC--Cc
Q 003822 604 HS--PSIFATSSFDQDVKLWDLRQKPI--------QPCYTASSSK-GNVMVCFSPDDHYLLVSAVDNEVRQLLAVD--GR 670 (793)
Q Consensus 604 dg--~~~LaTgs~Dg~IrIWDlrt~~~--------~~~~~l~~~~-~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~t--g~ 670 (793)
.. ..++++|-.+|.+.+||+.++.. ..+.....|. .+.++.|.+.-..=++|+.+..+..|++.. |.
T Consensus 161 ~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gs 240 (323)
T KOG0322|consen 161 ACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGS 240 (323)
T ss_pred cccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCc
Confidence 21 13566788899999999998611 1111222333 444688887655557888888888888754 33
Q ss_pred EE--EEEeeecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCCCCccceeeeccCCccccCCc
Q 003822 671 VH--LNFGITATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNM 748 (793)
Q Consensus 671 ~~--~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~ 748 (793)
+. ..... .+..+..+..-||++ .+||++.|++| |||..++.+.+. .|+-|. .
T Consensus 241 lq~~~e~~l---knpGv~gvrIRpD~K-IlATAGWD~Ri-RVyswrtl~pLA--VLkyHs-------------------a 294 (323)
T KOG0322|consen 241 LQIRKEITL---KNPGVSGVRIRPDGK-ILATAGWDHRI-RVYSWRTLNPLA--VLKYHS-------------------A 294 (323)
T ss_pred ccccceEEe---cCCCccceEEccCCc-EEeecccCCcE-EEEEeccCCchh--hhhhhh-------------------c
Confidence 21 12222 233466777889999 99999999999 999999999998 665554 5
Q ss_pred cEEEEEEcCCCCceeeEeeEEEeCCCcEEEEcC
Q 003822 749 SILAAYTRPSSKSEIVKVNLLASTDHCDKECSH 781 (793)
Q Consensus 749 ~V~sva~~P~~~~~iv~~~ltaS~Dg~VkvW~~ 781 (793)
.|++++|+|+ ...++ .||.|+.|.+|++
T Consensus 295 gvn~vAfspd-~~lmA----aaskD~rISLWkL 322 (323)
T KOG0322|consen 295 GVNAVAFSPD-CELMA----AASKDARISLWKL 322 (323)
T ss_pred ceeEEEeCCC-Cchhh----hccCCceEEeeec
Confidence 7999999995 45555 7899999999985
No 203
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.44 E-value=1.4e-12 Score=142.01 Aligned_cols=214 Identities=17% Similarity=0.230 Sum_probs=155.6
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCC-CEEEEEEcCCcEEEEEcCCCCCc
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYP-SKLIAGSDNGSLKLYDIRHMPPS 534 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g-~~Lasgs~DgtV~vWDl~~~~~~ 534 (793)
|.|++|+. +|.+|++|+.|-.+.|||.-..+.+..+.. ||...|.++.|.|..+ ..+++|+.|..|+++|+...+.-
T Consensus 53 VN~LeWn~-dG~lL~SGSDD~r~ivWd~~~~KllhsI~T-gHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~ 130 (758)
T KOG1310|consen 53 VNCLEWNA-DGELLASGSDDTRLIVWDPFEYKLLHSIST-GHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEG 130 (758)
T ss_pred ecceeecC-CCCEEeecCCcceEEeecchhcceeeeeec-ccccceeEEeeeccCCCeEEEeccCcceEEEEeccccccc
Confidence 89999999 999999999999999999998888888865 9999999999997655 46888999999999999863321
Q ss_pred ccccccCCce-eEecCCCCeEEEEEccCC-CEEEEEECCCcEEEEECCCCc-------EEEEEcc--cCCCCeEEEEEcC
Q 003822 535 IRGMHYGAGT-VTFDEFDQLTSVHVNSMD-ELFLASGYSKNIALYDINSGR-------RLQVFAD--MHKEHINVVKFSN 603 (793)
Q Consensus 535 ~~~~~~~~~~-~~~~~~~~V~sv~~s~~~-~~lla~g~Dg~I~IWDl~tg~-------~l~~~~~--gh~~~V~sv~fsp 603 (793)
.......... .-..|...|..++..|.+ ..+.+++.||+|+-+|++... +...+.. +.--...++..+|
T Consensus 131 ~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp 210 (758)
T KOG1310|consen 131 GMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISP 210 (758)
T ss_pred ccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecC
Confidence 1111111111 122456778888888888 678888899999999998621 1111111 1223567899999
Q ss_pred CCCcEEEEEeCCCeEEEEECCCCC-----------ccc-----e-EEccCCC----C--------eEEEEEecCCCEEEE
Q 003822 604 HSPSIFATSSFDQDVKLWDLRQKP-----------IQP-----C-YTASSSK----G--------NVMVCFSPDDHYLLV 654 (793)
Q Consensus 604 dg~~~LaTgs~Dg~IrIWDlrt~~-----------~~~-----~-~~l~~~~----~--------~vsv~fSpdg~~Las 654 (793)
..+.+|++|+.|-..++||.|... +.+ + +-.++|. + ..-+.|+|+|.-|++
T Consensus 211 ~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLv 290 (758)
T KOG1310|consen 211 SRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLV 290 (758)
T ss_pred CCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEECCCCcEEEE
Confidence 999999999999999999954310 100 1 1111211 1 113899999998888
Q ss_pred EeCCCeEEEEEcCCCcE
Q 003822 655 SAVDNEVRQLLAVDGRV 671 (793)
Q Consensus 655 gs~Dg~I~IwDl~tg~~ 671 (793)
.-....|+++|+..++.
T Consensus 291 s~~gEhVYlfdvn~~~~ 307 (758)
T KOG1310|consen 291 SWGGEHVYLFDVNEDKS 307 (758)
T ss_pred eeCCeEEEEEeecCCCC
Confidence 87777899999887653
No 204
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.44 E-value=1.4e-11 Score=135.19 Aligned_cols=279 Identities=15% Similarity=0.090 Sum_probs=193.7
Q ss_pred eEEEEEeCCCCC-EEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCc
Q 003822 456 PRQFEYHPSISC-LMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS 534 (793)
Q Consensus 456 V~~vafsP~d~~-~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~ 534 (793)
.+.|..+| ||+ ++|+|.+--.|++||+.+-.+...- .-...+..+...+.+-..++.--.|.+|.+-.-....
T Consensus 54 st~ik~s~-DGqY~lAtG~YKP~ikvydlanLSLKFER---hlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~h-- 127 (703)
T KOG2321|consen 54 STRIKVSP-DGQYLLATGTYKPQIKVYDLANLSLKFER---HLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRH-- 127 (703)
T ss_pred cceeEecC-CCcEEEEecccCCceEEEEcccceeeeee---cccccceeEEEeccchhhheEeecCceeeehhhcCee--
Confidence 57789999 655 4667888999999999865443322 1123344443333444456666677777654332211
Q ss_pred ccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeC
Q 003822 535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSF 614 (793)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~ 614 (793)
.....+..-..++++...--++.+|....|+-+++..|+-+..+. ...+.++++..++.. .+|++|+.
T Consensus 128 ----------y~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~-~~~~~lN~v~in~~h-gLla~Gt~ 195 (703)
T KOG2321|consen 128 ----------YRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFE-TDSGELNVVSINEEH-GLLACGTE 195 (703)
T ss_pred ----------eeeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccc-cccccceeeeecCcc-ceEEeccc
Confidence 111222334667777777778888888899999999999999988 467899999999988 79999999
Q ss_pred CCeEEEEECCCCCccceEEccCC----------CCeEEEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCC
Q 003822 615 DQDVKLWDLRQKPIQPCYTASSS----------KGNVMVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQ 684 (793)
Q Consensus 615 Dg~IrIWDlrt~~~~~~~~l~~~----------~~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~ 684 (793)
+|.|-.||.|............+ ..+.++.|+.+|-.+++|+.+|.+.|||+++.+++..-. +.....
T Consensus 196 ~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kd--h~~e~p 273 (703)
T KOG2321|consen 196 DGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKD--HGYELP 273 (703)
T ss_pred CceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecc--cCCccc
Confidence 99999999998643333222211 124569999999999999999999999999988765432 334556
Q ss_pred cEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCCCCccceeeeccCCccccCCccEEEEEEcCCCCceee
Q 003822 685 NYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKSEIV 764 (793)
Q Consensus 685 v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~~~~iv 764 (793)
+..+.|.+.++ .=...+.|..+++|||-.+|+... .++... .++.+++-| +..+++
T Consensus 274 i~~l~~~~~~~-q~~v~S~Dk~~~kiWd~~~Gk~~a--siEpt~--------------------~lND~C~~p-~sGm~f 329 (703)
T KOG2321|consen 274 IKKLDWQDTDQ-QNKVVSMDKRILKIWDECTGKPMA--SIEPTS--------------------DLNDFCFVP-GSGMFF 329 (703)
T ss_pred eeeecccccCC-CceEEecchHHhhhcccccCCcee--eccccC--------------------CcCceeeec-CCceEE
Confidence 77888876543 223334677777999999999887 333221 366777788 456666
Q ss_pred EeeEEEeCCCcEEEEcCC
Q 003822 765 KVNLLASTDHCDKECSHG 782 (793)
Q Consensus 765 ~~~ltaS~Dg~VkvW~~~ 782 (793)
+|-.++.+..+-.+
T Consensus 330 ----~Ane~~~m~~yyiP 343 (703)
T KOG2321|consen 330 ----TANESSKMHTYYIP 343 (703)
T ss_pred ----EecCCCcceeEEcc
Confidence 78777777666544
No 205
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.43 E-value=1.9e-13 Score=154.76 Aligned_cols=239 Identities=18% Similarity=0.217 Sum_probs=176.5
Q ss_pred cCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcE
Q 003822 495 FGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNI 574 (793)
Q Consensus 495 ~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I 574 (793)
.+|..+|.|+.|- ..|.++++|+.|..|+||.+++..+. .. .-.|.+.|+.++++..+-.+++++.|..|
T Consensus 187 lgH~naVyca~fD-rtg~~Iitgsdd~lvKiwS~et~~~l-As--------~rGhs~ditdlavs~~n~~iaaaS~D~vI 256 (1113)
T KOG0644|consen 187 LGHRNAVYCAIFD-RTGRYIITGSDDRLVKIWSMETARCL-AS--------CRGHSGDITDLAVSSNNTMIAAASNDKVI 256 (1113)
T ss_pred Hhhhhheeeeeec-cccceEeecCccceeeeeeccchhhh-cc--------CCCCccccchhccchhhhhhhhcccCceE
Confidence 3899999999985 78999999999999999999887652 11 22345778999997777777788899999
Q ss_pred EEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEECCCCC----ccceEEccCCCCeEEEEEecCCC
Q 003822 575 ALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKP----IQPCYTASSSKGNVMVCFSPDDH 650 (793)
Q Consensus 575 ~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~Dg~IrIWDlrt~~----~~~~~~l~~~~~~vsv~fSpdg~ 650 (793)
++|-+..+.++..+. +|++.|++++|+|-. +.+.||++++||.+-.. +.+. .+.+..-..++.|...+.
T Consensus 257 rvWrl~~~~pvsvLr-ghtgavtaiafsP~~-----sss~dgt~~~wd~r~~~~~y~prp~-~~~~~~~~~s~~~~~~~~ 329 (1113)
T KOG0644|consen 257 RVWRLPDGAPVSVLR-GHTGAVTAIAFSPRA-----SSSDDGTCRIWDARLEPRIYVPRPL-KFTEKDLVDSILFENNGD 329 (1113)
T ss_pred EEEecCCCchHHHHh-ccccceeeeccCccc-----cCCCCCceEeccccccccccCCCCC-Ccccccceeeeecccccc
Confidence 999999999999999 799999999999854 67889999999998211 1111 122333344688888999
Q ss_pred EEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCCCC
Q 003822 651 YLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKGSG 730 (793)
Q Consensus 651 ~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~~~ 730 (793)
-+++|+.|+.-..|.......... ...-+.++.+-..+.+++-.+-.+ .+|++.+|++++ .+.||.
T Consensus 330 ~f~Tgs~d~ea~n~e~~~l~~~~~---------~lif~t~ssd~~~~~~~ar~~~~~-~vwnl~~g~l~H--~l~ghs-- 395 (1113)
T KOG0644|consen 330 RFLTGSRDGEARNHEFEQLAWRSN---------LLIFVTRSSDLSSIVVTARNDHRL-CVWNLYTGQLLH--NLMGHS-- 395 (1113)
T ss_pred ccccccCCcccccchhhHhhhhcc---------ceEEEeccccccccceeeeeeeEe-eeeecccchhhh--hhcccc--
Confidence 999999999988887543221100 111111222322377788888888 999999999887 555554
Q ss_pred ccceeeeccCCccccCCccEEEEEEcCCCCceeeEeeEEEeCCCcEEEEcCCCCC
Q 003822 731 TSMFVQSLRGDPFRDFNMSILAAYTRPSSKSEIVKVNLLASTDHCDKECSHGQHS 785 (793)
Q Consensus 731 ~s~~v~sl~g~~~~~h~~~V~sva~~P~~~~~iv~~~ltaS~Dg~VkvW~~~~~~ 785 (793)
..+..+.+||-.. .++ +.|+-||...||+.-+..
T Consensus 396 -----------------d~~yvLd~Hpfn~-ri~---msag~dgst~iwdi~eg~ 429 (1113)
T KOG0644|consen 396 -----------------DEVYVLDVHPFNP-RIA---MSAGYDGSTIIWDIWEGI 429 (1113)
T ss_pred -----------------cceeeeeecCCCc-Hhh---hhccCCCceEeeecccCC
Confidence 4678888898433 333 478999999999975543
No 206
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.43 E-value=1.1e-11 Score=131.46 Aligned_cols=246 Identities=14% Similarity=0.166 Sum_probs=171.7
Q ss_pred ceEEEEEeCCCCCEEEEEeCCCeEEEEECC--------C------CeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcC
Q 003822 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHE--------N------ENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDN 520 (793)
Q Consensus 455 ~V~~vafsP~d~~~Lasgs~DG~I~VWd~~--------t------~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~D 520 (793)
+|+++.|+| ++++||+|+.+|+|.+|... + ...+......+|...|..++|+ +++.++++++.|
T Consensus 67 aVN~vRf~p-~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws-~d~~~l~s~s~d 144 (434)
T KOG1009|consen 67 AVNVVRFSP-DGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWS-PDSNFLVSGSVD 144 (434)
T ss_pred eeEEEEEcC-CcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhcc-CCCceeeeeecc
Confidence 499999999 99999999999999999765 2 1122223344899999999998 899999999999
Q ss_pred CcEEEEEcCCCCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEc----------c
Q 003822 521 GSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFA----------D 590 (793)
Q Consensus 521 gtV~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~----------~ 590 (793)
.++++||+..+... .....|...|..++|.|-+.++++-+.|...+.+.+...+.++... .
T Consensus 145 ns~~l~Dv~~G~l~---------~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~ 215 (434)
T KOG1009|consen 145 NSVRLWDVHAGQLL---------AILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNE 215 (434)
T ss_pred ceEEEEEeccceeE---------eeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCC
Confidence 99999999997652 2234556778999999999999888888877777766433322111 0
Q ss_pred c--------CC----CCeEEEEEcCCCCcEEEEEeC----CC-----eEEEEECCCCCccceEEccCCCCe-EEEEEec-
Q 003822 591 M--------HK----EHINVVKFSNHSPSIFATSSF----DQ-----DVKLWDLRQKPIQPCYTASSSKGN-VMVCFSP- 647 (793)
Q Consensus 591 g--------h~----~~V~sv~fspdg~~~LaTgs~----Dg-----~IrIWDlrt~~~~~~~~l~~~~~~-vsv~fSp- 647 (793)
+ |. .....++|+|+| .++++.+. ++ +.++|+-.. ..+|...++..... +.+.|+|
T Consensus 216 ~e~~s~rLfhDeTlksFFrRlsfTPdG-~llvtPag~~~~g~~~~~n~tYvfsrk~-l~rP~~~lp~~~k~~lavr~~pV 293 (434)
T KOG1009|consen 216 REGKSTRLFHDETLKSFFRRLSFTPDG-SLLVTPAGLFKVGGGVFRNTSYVFSRKD-LKRPAARLPSPKKPALAVRFSPV 293 (434)
T ss_pred CCcceeeeeecCchhhhhhhcccCCCC-cEEEcccceeeeCCceeeceeEeecccc-ccCceeecCCCCcceEEEEeeee
Confidence 0 11 123457899999 78877542 22 245555443 23455555544333 2355554
Q ss_pred -----------------CCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEE
Q 003822 648 -----------------DDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRI 710 (793)
Q Consensus 648 -----------------dg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~I 710 (793)
-+-.+|+++ .+.|++||..+..++.... .-|-..++.++|++||. +++..|.||.. .+
T Consensus 294 y~elrp~~~~~~~~~lpyrlvfaiAt-~~svyvydtq~~~P~~~v~--nihy~~iTDiaws~dg~-~l~vSS~DGyC-S~ 368 (434)
T KOG1009|consen 294 YYELRPLSSEKFLFVLPYRLVFAIAT-KNSVYVYDTQTLEPLAVVD--NIHYSAITDIAWSDDGS-VLLVSSTDGFC-SL 368 (434)
T ss_pred EEEeccccccccccccccceEEEEee-cceEEEeccccccceEEEe--eeeeeeecceeecCCCc-EEEEeccCCce-EE
Confidence 123355555 5689999998877765543 23556788999999999 99999999987 66
Q ss_pred EEcCCCcE
Q 003822 711 CCAQTGRR 718 (793)
Q Consensus 711 WDv~tg~~ 718 (793)
-.++..++
T Consensus 369 vtfe~~el 376 (434)
T KOG1009|consen 369 VTFEPWEL 376 (434)
T ss_pred EEEcchhc
Confidence 66655443
No 207
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.43 E-value=2.3e-12 Score=140.01 Aligned_cols=210 Identities=15% Similarity=0.291 Sum_probs=160.3
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcccccccCCce
Q 003822 465 ISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGT 544 (793)
Q Consensus 465 d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~~~~~~~~~~ 544 (793)
....++.++.||.+.|.+- .++....+. .|.++|.+-.|+ ++|.-|++++.||.|++|.-...-. .
T Consensus 74 ~~d~~~i~s~DGkf~il~k-~~rVE~sv~--AH~~A~~~gRW~-~dGtgLlt~GEDG~iKiWSrsGMLR----------S 139 (737)
T KOG1524|consen 74 GSDTLLICSNDGRFVILNK-SARVERSIS--AHAAAISSGRWS-PDGAGLLTAGEDGVIKIWSRSGMLR----------S 139 (737)
T ss_pred CcceEEEEcCCceEEEecc-cchhhhhhh--hhhhhhhhcccC-CCCceeeeecCCceEEEEeccchHH----------H
Confidence 3467888889999999874 455555555 899999999998 8999999999999999998654322 1
Q ss_pred eEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEECC
Q 003822 545 VTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLR 624 (793)
Q Consensus 545 ~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~Dg~IrIWDlr 624 (793)
...+...+|.|++|.|+.+.++.+. .+.+.|=-+.....+-..+ +|.+-|.++.|++.+ +++++|+.|-..+|||..
T Consensus 140 tl~Q~~~~v~c~~W~p~S~~vl~c~-g~h~~IKpL~~n~k~i~Wk-AHDGiiL~~~W~~~s-~lI~sgGED~kfKvWD~~ 216 (737)
T KOG1524|consen 140 TVVQNEESIRCARWAPNSNSIVFCQ-GGHISIKPLAANSKIIRWR-AHDGLVLSLSWSTQS-NIIASGGEDFRFKIWDAQ 216 (737)
T ss_pred HHhhcCceeEEEEECCCCCceEEec-CCeEEEeecccccceeEEe-ccCcEEEEeecCccc-cceeecCCceeEEeeccc
Confidence 1123336799999999888776653 4567776777666667777 799999999999998 899999999999999976
Q ss_pred CCCccceEEccCCCCeE-EEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCCCeEEEEEeC
Q 003822 625 QKPIQPCYTASSSKGNV-MVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNGRDYIVSGSC 703 (793)
Q Consensus 625 t~~~~~~~~l~~~~~~v-sv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~ 703 (793)
. .+.+....|..++ +++|.|+ +.++.++. ++++ +. ....+.+..++|++||. .++.|..
T Consensus 217 G---~~Lf~S~~~ey~ITSva~npd-~~~~v~S~-nt~R------------~~--~p~~GSifnlsWS~DGT-Q~a~gt~ 276 (737)
T KOG1524|consen 217 G---ANLFTSAAEEYAITSVAFNPE-KDYLLWSY-NTAR------------FS--SPRVGSIFNLSWSADGT-QATCGTS 276 (737)
T ss_pred C---cccccCChhccceeeeeeccc-cceeeeee-eeee------------ec--CCCccceEEEEEcCCCc-eeecccc
Confidence 5 4566666666555 6999999 66666663 3444 21 22345688999999999 8899988
Q ss_pred CCcEEEEE
Q 003822 704 DEHVVRIC 711 (793)
Q Consensus 704 Dg~II~IW 711 (793)
.|.+|.-+
T Consensus 277 ~G~v~~A~ 284 (737)
T KOG1524|consen 277 TGQLIVAY 284 (737)
T ss_pred CceEEEee
Confidence 88884443
No 208
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.43 E-value=3.5e-11 Score=120.06 Aligned_cols=219 Identities=14% Similarity=0.103 Sum_probs=149.2
Q ss_pred CEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcccccccCCceeE-ecCCCCeEEEEEccCCCEEEEEECCCcEEEEE
Q 003822 500 SVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVT-FDEFDQLTSVHVNSMDELFLASGYSKNIALYD 578 (793)
Q Consensus 500 ~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~~~~~~~~~~~~-~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWD 578 (793)
.|.+-+|+ +.+++|++|+.+|+|-+..+...........+....+. ..|.++|+.++|+ +..++++| ||.|+-|.
T Consensus 12 tvf~qa~s-p~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~ 87 (325)
T KOG0649|consen 12 TVFAQAIS-PSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWE 87 (325)
T ss_pred HHHHHhhC-CcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEee
Confidence 35555676 67899999999999999998764332222233333444 4567899999995 56666655 59999997
Q ss_pred CCCCc------EEEEEc-ccCC-----CCeEEEEEcCCCCcEEEEEeCCCeEEEEECCCCCccceEEccCCCCeEE-EEE
Q 003822 579 INSGR------RLQVFA-DMHK-----EHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVM-VCF 645 (793)
Q Consensus 579 l~tg~------~l~~~~-~gh~-----~~V~sv~fspdg~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~~~~vs-v~f 645 (793)
.+... .+...+ ..|. ..|+++-..|.. +-+++++.|+.++-||+.+++.+ ..+.+|+..+. +.-
T Consensus 88 W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~e-nSi~~AgGD~~~y~~dlE~G~i~--r~~rGHtDYvH~vv~ 164 (325)
T KOG0649|consen 88 WNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSE-NSILFAGGDGVIYQVDLEDGRIQ--REYRGHTDYVHSVVG 164 (325)
T ss_pred ehhhhhhccchhhhhhcCccccCcccCCccceeEeccCC-CcEEEecCCeEEEEEEecCCEEE--EEEcCCcceeeeeee
Confidence 66421 111111 0122 368899999988 45555568999999999999544 55668888775 554
Q ss_pred ecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCC-----CCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEE
Q 003822 646 SPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGS-----SQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRLR 720 (793)
Q Consensus 646 Spdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~-----~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~ 720 (793)
-.....+++|+.||++++||.++++.+..+....... ..-+..+...+.. ++++|+.- .+ .+|.+++.+...
T Consensus 165 R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~ed-WlvCGgGp-~l-slwhLrsse~t~ 241 (325)
T KOG0649|consen 165 RNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNED-WLVCGGGP-KL-SLWHLRSSESTC 241 (325)
T ss_pred cccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCc-eEEecCCC-ce-eEEeccCCCceE
Confidence 3455669999999999999999999988776422111 1223344444555 78877654 55 899999999888
Q ss_pred eeeecCCC
Q 003822 721 DISLEGKG 728 (793)
Q Consensus 721 ~~~L~gh~ 728 (793)
.+.+.+|-
T Consensus 242 vfpipa~v 249 (325)
T KOG0649|consen 242 VFPIPARV 249 (325)
T ss_pred EEecccce
Confidence 55666553
No 209
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.41 E-value=1e-10 Score=133.26 Aligned_cols=224 Identities=16% Similarity=0.097 Sum_probs=144.0
Q ss_pred CeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEc---CCcEEEEEcCCCCCcccccccCCceeEecCCCC
Q 003822 476 GEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSD---NGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQ 552 (793)
Q Consensus 476 G~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~---DgtV~vWDl~~~~~~~~~~~~~~~~~~~~~~~~ 552 (793)
..|.+||.+...... +. .+...+.+.+|+ |+|+.|+..+. +..|.+|++.+++..... .....
T Consensus 179 ~~l~~~d~dg~~~~~-lt--~~~~~~~~p~wS-PDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~----------~~~~~ 244 (429)
T PRK03629 179 YELRVSDYDGYNQFV-VH--RSPQPLMSPAWS-PDGSKLAYVTFESGRSALVIQTLANGAVRQVA----------SFPRH 244 (429)
T ss_pred eeEEEEcCCCCCCEE-ee--cCCCceeeeEEc-CCCCEEEEEEecCCCcEEEEEECCCCCeEEcc----------CCCCC
Confidence 479999987654433 32 455689999998 78888876542 357999999876531110 11122
Q ss_pred eEEEEEccCCCEEEEEE-CCC--cEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeC-CCe--EEEEECCCC
Q 003822 553 LTSVHVNSMDELFLASG-YSK--NIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSF-DQD--VKLWDLRQK 626 (793)
Q Consensus 553 V~sv~~s~~~~~lla~g-~Dg--~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~-Dg~--IrIWDlrt~ 626 (793)
+....|+|++..++.+. .+| .|++||+.+++...... +...+....|+|+| +.|+..+. ++. |.++|+.++
T Consensus 245 ~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~--~~~~~~~~~wSPDG-~~I~f~s~~~g~~~Iy~~d~~~g 321 (429)
T PRK03629 245 NGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTD--GRSNNTEPTWFPDS-QNLAYTSDQAGRPQVYKVNINGG 321 (429)
T ss_pred cCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccC--CCCCcCceEECCCC-CEEEEEeCCCCCceEEEEECCCC
Confidence 44678999999888764 344 59999999887654433 44567889999999 66655554 444 445566665
Q ss_pred CccceEEccCCCCeEEEEEecCCCEEEEEeCC---CeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCCCeEEEEEeC
Q 003822 627 PIQPCYTASSSKGNVMVCFSPDDHYLLVSAVD---NEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNGRDYIVSGSC 703 (793)
Q Consensus 627 ~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs~D---g~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~ 703 (793)
....+ ...+ .......|+|||++|+..+.+ ..|.+||+.+++.. .+. .. .......|+|||+ +|+.++.
T Consensus 322 ~~~~l-t~~~-~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt--~~--~~~~~p~~SpDG~-~i~~~s~ 393 (429)
T PRK03629 322 APQRI-TWEG-SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLT--DT--FLDETPSIAPNGT-MVIYSSS 393 (429)
T ss_pred CeEEe-ecCC-CCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeC--CC--CCCCCceECCCCC-EEEEEEc
Confidence 43322 2222 122358899999999887643 35888999888753 332 11 1234678999999 7777776
Q ss_pred CCc--EEEEEEcCCCcEEEeeeecCC
Q 003822 704 DEH--VVRICCAQTGRRLRDISLEGK 727 (793)
Q Consensus 704 Dg~--II~IWDv~tg~~l~~~~L~gh 727 (793)
++. ++.+|++ +|+... .+.+|
T Consensus 394 ~~~~~~l~~~~~-~G~~~~--~l~~~ 416 (429)
T PRK03629 394 QGMGSVLNLVST-DGRFKA--RLPAT 416 (429)
T ss_pred CCCceEEEEEEC-CCCCeE--ECccC
Confidence 664 2367777 454444 44443
No 210
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.38 E-value=6.1e-12 Score=134.32 Aligned_cols=197 Identities=18% Similarity=0.193 Sum_probs=143.3
Q ss_pred EEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCccc
Q 003822 457 RQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIR 536 (793)
Q Consensus 457 ~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~~ 536 (793)
.+++|++ ++..+++|+.||++|||++.+...+.... .|.+.|.++.|+ ++|++|++.+.| ..+||+.+++.....
T Consensus 148 k~vaf~~-~gs~latgg~dg~lRv~~~Ps~~t~l~e~--~~~~eV~DL~FS-~dgk~lasig~d-~~~VW~~~~g~~~a~ 222 (398)
T KOG0771|consen 148 KVVAFNG-DGSKLATGGTDGTLRVWEWPSMLTILEEI--AHHAEVKDLDFS-PDGKFLASIGAD-SARVWSVNTGAALAR 222 (398)
T ss_pred eEEEEcC-CCCEeeeccccceEEEEecCcchhhhhhH--hhcCccccceeC-CCCcEEEEecCC-ceEEEEeccCchhhh
Confidence 5789999 99999999999999999987666554444 788999999998 899999999999 999999999844211
Q ss_pred ccccCCceeEecCCCCeEEEEEccCC---CEEEEEE--CCCcEEEEECCCCcE-----EEEEcccCCCCeEEEEEcCCCC
Q 003822 537 GMHYGAGTVTFDEFDQLTSVHVNSMD---ELFLASG--YSKNIALYDINSGRR-----LQVFADMHKEHINVVKFSNHSP 606 (793)
Q Consensus 537 ~~~~~~~~~~~~~~~~V~sv~~s~~~---~~lla~g--~Dg~I~IWDl~tg~~-----l~~~~~gh~~~V~sv~fspdg~ 606 (793)
... +........+.|..++ ..++++. ..+.|+.||+...+. .++.. .-...|.+++.+++|
T Consensus 223 ~t~-------~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~-~~~~siSsl~VS~dG- 293 (398)
T KOG0771|consen 223 KTP-------FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKI-KRFKSISSLAVSDDG- 293 (398)
T ss_pred cCC-------cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhh-hccCcceeEEEcCCC-
Confidence 110 1111224455554433 4444444 357788777654221 11111 123479999999999
Q ss_pred cEEEEEeCCCeEEEEECCCCCccceEEccCCCCeEE-EEEecCCCEEEEEeCCCeEEEEEcCC
Q 003822 607 SIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVM-VCFSPDDHYLLVSAVDNEVRQLLAVD 668 (793)
Q Consensus 607 ~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~~~~vs-v~fSpdg~~Lasgs~Dg~I~IwDl~t 668 (793)
+++|.|+.||.|-|++..+-+... +.-+.|...++ +.|+||.+++++.+.|....+..+.-
T Consensus 294 kf~AlGT~dGsVai~~~~~lq~~~-~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 294 KFLALGTMDGSVAIYDAKSLQRLQ-YVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred cEEEEeccCCcEEEEEeceeeeeE-eehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 999999999999999998764332 33345666665 99999999999999999888877653
No 211
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.36 E-value=3.7e-11 Score=125.10 Aligned_cols=256 Identities=17% Similarity=0.245 Sum_probs=172.6
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCe-----EEEEEeccCC------------CCCEEEEEEeeCC-CCEEEEE
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENEN-----IVSYIPSFGA------------MNSVLGLCWLKKY-PSKLIAG 517 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~-----~i~~l~~~~h------------~~~V~sv~fs~~~-g~~Lasg 517 (793)
+.+|.|.. .|.+||+|..+|.|.++.-+... ....++ .| ...|..+.|.++. ...++..
T Consensus 28 is~vef~~-~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fq--shepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 28 ISAVEFDH-YGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQ--SHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred eeeEEeec-ccceEeecCCCCeEEEeecccccccceeeeeeee--ccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 78999999 99999999999999999754322 122222 23 3468889998543 3567778
Q ss_pred EcCCcEEEEEcCCCCCcc-------------------cccccCCc--------eeEecCCCCeEEEEEccCCCEEEEEEC
Q 003822 518 SDNGSLKLYDIRHMPPSI-------------------RGMHYGAG--------TVTFDEFDQLTSVHVNSMDELFLASGY 570 (793)
Q Consensus 518 s~DgtV~vWDl~~~~~~~-------------------~~~~~~~~--------~~~~~~~~~V~sv~~s~~~~~lla~g~ 570 (793)
+.|.+|++|.+....... .....+.. ...-.|.-.|.++.++++...+++ ++
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lS-AD 183 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLS-AD 183 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEee-cc
Confidence 899999999987543221 00011111 111134456899999877777665 46
Q ss_pred CCcEEEEECCCCcE---EEEEcccC-----CCCeEEEEEcCCCCcEEEEEeCCCeEEEEECCCCC----ccceEEccCCC
Q 003822 571 SKNIALYDINSGRR---LQVFADMH-----KEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKP----IQPCYTASSSK 638 (793)
Q Consensus 571 Dg~I~IWDl~tg~~---l~~~~~gh-----~~~V~sv~fspdg~~~LaTgs~Dg~IrIWDlrt~~----~~~~~~l~~~~ 638 (793)
|=.|.+|++.-... +..++ ++ +.-|++..|+|..-++|+-++..|+|++-|+|... ...++..+...
T Consensus 184 dLRINLWnlei~d~sFnIVDIK-P~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp 262 (433)
T KOG1354|consen 184 DLRINLWNLEIIDQSFNIVDIK-PANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDP 262 (433)
T ss_pred ceeeeeccccccCCceeEEEcc-ccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCC
Confidence 78899999874322 22233 22 34688999999887899999999999999999531 11112211110
Q ss_pred ----------CeEE-EEEecCCCEEEEEeCCCeEEEEEc-CCCcEEEEEeeecCCC------------CCcEEEEEeeCC
Q 003822 639 ----------GNVM-VCFSPDDHYLLVSAVDNEVRQLLA-VDGRVHLNFGITATGS------------SQNYTRSYYLNG 694 (793)
Q Consensus 639 ----------~~vs-v~fSpdg~~Lasgs~Dg~I~IwDl-~tg~~~~~l~~~~~~~------------~~v~s~afspdg 694 (793)
..++ +.|+++|+||++-.. -+|++||+ ...+++.++..+..-. -.-..++|+.++
T Consensus 263 ~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~ 341 (433)
T KOG1354|consen 263 SSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGND 341 (433)
T ss_pred cchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCc
Confidence 1123 999999999998763 68999999 4566666665432111 123467899998
Q ss_pred CeEEEEEeCCCcEEEEEEcCCCcEE
Q 003822 695 RDYIVSGSCDEHVVRICCAQTGRRL 719 (793)
Q Consensus 695 ~~~L~Sgs~Dg~II~IWDv~tg~~l 719 (793)
. +++|||..... ++++...|...
T Consensus 342 ~-~v~TGsy~n~f-rvf~~~~gsk~ 364 (433)
T KOG1354|consen 342 S-YVMTGSYNNVF-RVFNLARGSKE 364 (433)
T ss_pred c-eEecccccceE-EEecCCCCcce
Confidence 8 99999999888 99997776543
No 212
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.35 E-value=4.6e-11 Score=136.14 Aligned_cols=211 Identities=14% Similarity=0.119 Sum_probs=141.2
Q ss_pred eEEEEEeCCCCCEEEEEeCC---CeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEE-cCCcEEEE--EcC
Q 003822 456 PRQFEYHPSISCLMVFGTLD---GEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGS-DNGSLKLY--DIR 529 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~D---G~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs-~DgtV~vW--Dl~ 529 (793)
+...+|+| +++.|+.++.+ ..|++||+.+++........+| ...++|+ ++|+.|+.++ .+|.+.+| |+.
T Consensus 206 v~~p~wSP-DG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wS-PDG~~La~~~~~~g~~~Iy~~d~~ 280 (429)
T PRK01742 206 LMSPAWSP-DGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFS-PDGSRLAFASSKDGVLNIYVMGAN 280 (429)
T ss_pred cccceEcC-CCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeEC-CCCCEEEEEEecCCcEEEEEEECC
Confidence 78899999 88989887654 3699999988765433222233 3467898 7888887764 68877766 444
Q ss_pred CCCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEE-CCCcEEEEECCC-CcEEEEEcccCCCCeEEEEEcCCCCc
Q 003822 530 HMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASG-YSKNIALYDINS-GRRLQVFADMHKEHINVVKFSNHSPS 607 (793)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g-~Dg~I~IWDl~t-g~~l~~~~~gh~~~V~sv~fspdg~~ 607 (793)
++.. ..+ ..+...+....|+|++..++.++ .+|...||++.. +.....+. +.. ....|+|+| +
T Consensus 281 ~~~~--~~l--------t~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~--~~~--~~~~~SpDG-~ 345 (429)
T PRK01742 281 GGTP--SQL--------TSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVG--GRG--YSAQISADG-K 345 (429)
T ss_pred CCCe--Eee--------ccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEec--CCC--CCccCCCCC-C
Confidence 4332 111 11234567889999999888776 468888887653 22223332 433 457899999 6
Q ss_pred EEEEEeCCCeEEEEECCCCCccceEEccCCCCeEEEEEecCCCEEEEEeCCCeEEEEEc--CCCcEEEEEeeecCCCCCc
Q 003822 608 IFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLVSAVDNEVRQLLA--VDGRVHLNFGITATGSSQN 685 (793)
Q Consensus 608 ~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs~Dg~I~IwDl--~tg~~~~~l~~~~~~~~~v 685 (793)
.++.++.++ +.+||+.++....+. ... ....+.|+|+|++|+.++.++.+.+|++ .+|+....+. .+...+
T Consensus 346 ~ia~~~~~~-i~~~Dl~~g~~~~lt--~~~-~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~---~~~g~~ 418 (429)
T PRK01742 346 TLVMINGDN-VVKQDLTSGSTEVLS--STF-LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLP---GSDGQV 418 (429)
T ss_pred EEEEEcCCC-EEEEECCCCCeEEec--CCC-CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEcc---CCCCCC
Confidence 777777665 556999887543221 111 2234789999999999999998888875 3577767664 334456
Q ss_pred EEEEEeeC
Q 003822 686 YTRSYYLN 693 (793)
Q Consensus 686 ~s~afspd 693 (793)
...+|+|-
T Consensus 419 ~~p~wsp~ 426 (429)
T PRK01742 419 KFPAWSPY 426 (429)
T ss_pred CCcccCCC
Confidence 67788874
No 213
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.35 E-value=3.2e-11 Score=124.70 Aligned_cols=274 Identities=11% Similarity=0.101 Sum_probs=179.0
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCC-CEEEEEEcCCcEEEEEcCCCCCc
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYP-SKLIAGSDNGSLKLYDIRHMPPS 534 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g-~~Lasgs~DgtV~vWDl~~~~~~ 534 (793)
|.-+.|..+.-..|.....++.|.+|++...+....+. ....++.+++|+ |+| ..|.+...|-.|.+|.+.+....
T Consensus 51 i~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckId--eg~agls~~~WS-PdgrhiL~tseF~lriTVWSL~t~~~~ 127 (447)
T KOG4497|consen 51 IVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKID--EGQAGLSSISWS-PDGRHILLTSEFDLRITVWSLNTQKGY 127 (447)
T ss_pred hhheeeeccceeeeeeeeccceEEEEEeecceeEEEec--cCCCcceeeeEC-CCcceEeeeecceeEEEEEEeccceeE
Confidence 55678888344445556678899999999888877776 667889999998 566 66777888999999999986542
Q ss_pred ccccccCCceeEecCCCCeEEEEEccCCCEEEEEEC-C--CcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEE
Q 003822 535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY-S--KNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFAT 611 (793)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~-D--g~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaT 611 (793)
.... ....+..++|++++.+.+..+. | ..+.|..-..-..++.+. .-+-..+.+.|+|+| +.+|
T Consensus 128 ~~~~----------pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~-~dT~DltgieWsPdg-~~la- 194 (447)
T KOG4497|consen 128 LLPH----------PKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFK-LDTIDLTGIEWSPDG-NWLA- 194 (447)
T ss_pred Eecc----------cccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcC-CCcccccCceECCCC-cEEE-
Confidence 1111 1134688899888887777664 3 223333222334455555 355667889999999 5554
Q ss_pred EeCCCeEEEEECCCCCccceEEccCCCCeEEEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEE----------------
Q 003822 612 SSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNF---------------- 675 (793)
Q Consensus 612 gs~Dg~IrIWDlrt~~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l---------------- 675 (793)
+||.--. -.++......+...++|+|.+++|++|+.|+.+||.+--+.+...++
T Consensus 195 --------Vwd~~Le--ykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~k 264 (447)
T KOG4497|consen 195 --------VWDNVLE--YKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEK 264 (447)
T ss_pred --------Eecchhh--heeeeeeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhh
Confidence 5664322 22233334456667999999999999999999888654332211000
Q ss_pred --------------------------------------------e---eecCCCCCcEEEEEeeCCCeEEEEEeCCC-cE
Q 003822 676 --------------------------------------------G---ITATGSSQNYTRSYYLNGRDYIVSGSCDE-HV 707 (793)
Q Consensus 676 --------------------------------------------~---~~~~~~~~v~s~afspdg~~~L~Sgs~Dg-~I 707 (793)
+ -.+.....+..++|++|.. |+++-.+.- ++
T Consensus 265 e~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~-y~aTrnd~~Pna 343 (447)
T KOG4497|consen 265 ETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDST-YAATRNDKYPNA 343 (447)
T ss_pred hhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCce-EEeeecCCCCce
Confidence 0 0011122455678999987 777764432 34
Q ss_pred EEEEEcCCCcEEEeeeecCCCCCccceeeeccCCccccCCccEEEEEEcCCCCceeeEeeEEEeCCCcEEEEcCCC
Q 003822 708 VRICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKSEIVKVNLLASTDHCDKECSHGQ 783 (793)
Q Consensus 708 I~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~~~~iv~~~ltaS~Dg~VkvW~~~~ 783 (793)
+.+||++.-+.-. .|.-. .+|.+..|+| ++..++ +..+...+.+|.+..
T Consensus 344 lW~Wdlq~l~l~a--vLiQk--------------------~piraf~WdP-~~prL~----vctg~srLY~W~psg 392 (447)
T KOG4497|consen 344 LWLWDLQNLKLHA--VLIQK--------------------HPIRAFEWDP-GRPRLV----VCTGKSRLYFWAPSG 392 (447)
T ss_pred EEEEechhhhhhh--hhhhc--------------------cceeEEEeCC-CCceEE----EEcCCceEEEEcCCC
Confidence 4999998766544 22111 2699999999 566666 566666678898654
No 214
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.34 E-value=9.9e-11 Score=122.64 Aligned_cols=192 Identities=18% Similarity=0.290 Sum_probs=139.3
Q ss_pred CCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEE
Q 003822 499 NSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYD 578 (793)
Q Consensus 499 ~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWD 578 (793)
..+..++|+ +.-..++++..|-+|++||-...... ...-.....|++++|-|.+..-++.+.-+-|.+|.
T Consensus 99 ~dlr~~aWh-qH~~~fava~nddvVriy~ksst~pt---------~Lks~sQrnvtclawRPlsaselavgCr~gIciW~ 168 (445)
T KOG2139|consen 99 IDLRGVAWH-QHIIAFAVATNDDVVRIYDKSSTCPT---------KLKSVSQRNVTCLAWRPLSASELAVGCRAGICIWS 168 (445)
T ss_pred cceeeEeec-hhhhhhhhhccCcEEEEeccCCCCCc---------eecchhhcceeEEEeccCCcceeeeeecceeEEEE
Confidence 357788998 45567889999999999998773221 11122235699999999998888888888899997
Q ss_pred CCC----CcEE--------EEEcc-cCCCCeEEEEEcCCCCcEEEEEeC-CCeEEEEECCCCCccceEEccCCCCeEEEE
Q 003822 579 INS----GRRL--------QVFAD-MHKEHINVVKFSNHSPSIFATSSF-DQDVKLWDLRQKPIQPCYTASSSKGNVMVC 644 (793)
Q Consensus 579 l~t----g~~l--------~~~~~-gh~~~V~sv~fspdg~~~LaTgs~-Dg~IrIWDlrt~~~~~~~~l~~~~~~vsv~ 644 (793)
... ++.+ ..++. +| .+|++++|++|| ..+++++. |..|.|||..++...++.. .+-.+...+.
T Consensus 169 ~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dg-t~l~tAS~gsssi~iWdpdtg~~~pL~~-~glgg~slLk 245 (445)
T KOG2139|consen 169 DSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDG-TILVTASFGSSSIMIWDPDTGQKIPLIP-KGLGGFSLLK 245 (445)
T ss_pred cCcccccccccccccccchhheeCCCC-ceeeEEEEcCCC-CEEeecccCcceEEEEcCCCCCcccccc-cCCCceeeEE
Confidence 653 2211 12221 34 689999999999 78888776 6779999999987777652 2333444699
Q ss_pred EecCCCEEEEEeCCCeEEEEEcCC-CcEEEEEeeecCCCCCcEEEEEeeCCCeEEEEEeCCCcE
Q 003822 645 FSPDDHYLLVSAVDNEVRQLLAVD-GRVHLNFGITATGSSQNYTRSYYLNGRDYIVSGSCDEHV 707 (793)
Q Consensus 645 fSpdg~~Lasgs~Dg~I~IwDl~t-g~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~I 707 (793)
|||||.+|++++-|+..++|.... ....+-. .+...+...+|+|+|+.+|++.+..-.+
T Consensus 246 wSPdgd~lfaAt~davfrlw~e~q~wt~erw~----lgsgrvqtacWspcGsfLLf~~sgsp~l 305 (445)
T KOG2139|consen 246 WSPDGDVLFAATCDAVFRLWQENQSWTKERWI----LGSGRVQTACWSPCGSFLLFACSGSPRL 305 (445)
T ss_pred EcCCCCEEEEecccceeeeehhcccceeccee----ccCCceeeeeecCCCCEEEEEEcCCceE
Confidence 999999999999999999995443 3322222 2445888999999999677776655433
No 215
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.34 E-value=5e-10 Score=115.97 Aligned_cols=179 Identities=14% Similarity=0.230 Sum_probs=128.3
Q ss_pred CeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcccccccCCceeEecCCCCeEE
Q 003822 476 GEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTS 555 (793)
Q Consensus 476 G~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~s 555 (793)
..|.|||=....++.++. ...+|.+|.+. .+.+++.- .+.|.||.+.+....+.... +...+..+.+
T Consensus 75 NkviIWDD~k~~~i~el~---f~~~I~~V~l~---r~riVvvl-~~~I~VytF~~n~k~l~~~e------t~~NPkGlC~ 141 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELS---FNSEIKAVKLR---RDRIVVVL-ENKIYVYTFPDNPKLLHVIE------TRSNPKGLCS 141 (346)
T ss_pred ceEEEEecccCcEEEEEE---eccceeeEEEc---CCeEEEEe-cCeEEEEEcCCChhheeeee------cccCCCceEe
Confidence 469999966677777774 45789999974 45666665 46899999986443222211 1111233444
Q ss_pred EEEccCCCEEEEEE-CCCcEEEEECCCCcE--EEEEcccCCCCeEEEEEcCCCCcEEEEEeCCCe-EEEEECCCCCccce
Q 003822 556 VHVNSMDELFLASG-YSKNIALYDINSGRR--LQVFADMHKEHINVVKFSNHSPSIFATSSFDQD-VKLWDLRQKPIQPC 631 (793)
Q Consensus 556 v~~s~~~~~lla~g-~Dg~I~IWDl~tg~~--l~~~~~gh~~~V~sv~fspdg~~~LaTgs~Dg~-IrIWDlrt~~~~~~ 631 (793)
++-+.....++.=| .-|.|.|-|+...+. ...+. +|.+.|.|++.+-+| .++||+|..|+ |||||..++.....
T Consensus 142 ~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~-AH~s~Iacv~Ln~~G-t~vATaStkGTLIRIFdt~~g~~l~E 219 (346)
T KOG2111|consen 142 LCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIIN-AHDSDIACVALNLQG-TLVATASTKGTLIRIFDTEDGTLLQE 219 (346)
T ss_pred ecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEE-cccCceeEEEEcCCc-cEEEEeccCcEEEEEEEcCCCcEeee
Confidence 44333333344435 359999999987655 45666 799999999999999 89999999998 89999999855443
Q ss_pred EEc-cCCCCeEEEEEecCCCEEEEEeCCCeEEEEEcCCC
Q 003822 632 YTA-SSSKGNVMVCFSPDDHYLLVSAVDNEVRQLLAVDG 669 (793)
Q Consensus 632 ~~l-~~~~~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg 669 (793)
+.- ..+..+.+++|||++.+|+++|..|+++||.++..
T Consensus 220 ~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 220 LRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred eecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence 332 22334557999999999999999999999988764
No 216
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.33 E-value=9.7e-10 Score=122.28 Aligned_cols=279 Identities=13% Similarity=0.132 Sum_probs=166.9
Q ss_pred CEE-EEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcccccccCCcee
Q 003822 467 CLM-VFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTV 545 (793)
Q Consensus 467 ~~L-asgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~~~~~~~~~~~ 545 (793)
+++ ++-..+|.|.|.|..+.+.+..+... ...-..+.|+ ++|+++++++.||.|.++|+.+.+...
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~--~~~h~~~~~s-~Dgr~~yv~~rdg~vsviD~~~~~~v~---------- 72 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTG--GAPHAGLKFS-PDGRYLYVANRDGTVSVIDLATGKVVA---------- 72 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-S--TTEEEEEE-T-T-SSEEEEEETTSEEEEEETTSSSEEE----------
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCC--CCceeEEEec-CCCCEEEEEcCCCeEEEEECCcccEEE----------
Confidence 344 45567899999999999999998742 2223345665 899999999999999999999976421
Q ss_pred EecCCCCeEEEEEccCCCEEEEEE-CCCcEEEEECCCCcEEEEEccc------CCCCeEEEEEcCCCCcEEEEEeCCCeE
Q 003822 546 TFDEFDQLTSVHVNSMDELFLASG-YSKNIALYDINSGRRLQVFADM------HKEHINVVKFSNHSPSIFATSSFDQDV 618 (793)
Q Consensus 546 ~~~~~~~V~sv~~s~~~~~lla~g-~Dg~I~IWDl~tg~~l~~~~~g------h~~~V~sv~fspdg~~~LaTgs~Dg~I 618 (793)
.........++++++++.+++++. .++.+.++|.++.++++.+..+ ....+.++..+|..+.++++--.-+.|
T Consensus 73 ~i~~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I 152 (369)
T PF02239_consen 73 TIKVGGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEI 152 (369)
T ss_dssp EEE-SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEE
T ss_pred EEecCCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeE
Confidence 222234568899999999999887 4899999999999999988631 234677888888884445544445888
Q ss_pred EEEECCCCCccceEEccCCCCeEEEEEecCCCEEEEE-eCCCeEEEEEcCCCcEEEEEeeecCCCC-CcE-------EEE
Q 003822 619 KLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLVS-AVDNEVRQLLAVDGRVHLNFGITATGSS-QNY-------TRS 689 (793)
Q Consensus 619 rIWDlrt~~~~~~~~l~~~~~~vsv~fSpdg~~Lasg-s~Dg~I~IwDl~tg~~~~~l~~~~~~~~-~v~-------s~a 689 (793)
.+-|...........+..........|+|+|+|++++ ..++.|.++|..+++.+..+......+. ... ...
T Consensus 153 ~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~v 232 (369)
T PF02239_consen 153 WVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPV 232 (369)
T ss_dssp EEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEE
T ss_pred EEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceE
Confidence 8889877644444444444555568999999998775 4577999999999988776653111111 111 112
Q ss_pred Ee--eCCCeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCCCCccceeeeccCCccccCCccEEEEEEcCCCCceeeEee
Q 003822 690 YY--LNGRDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKSEIVKVN 767 (793)
Q Consensus 690 fs--pdg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~~~~iv~~~ 767 (793)
|. ..+. ..++.-....+ .+||..+.+.++ ++..... . .-+..||++++..+ -.
T Consensus 233 w~~~~~~~-~~~~~ig~~~v-~v~d~~~wkvv~--~I~~~G~-------------------g-lFi~thP~s~~vwv-d~ 287 (369)
T PF02239_consen 233 WATSGLGY-FAIPLIGTDPV-SVHDDYAWKVVK--TIPTQGG-------------------G-LFIKTHPDSRYVWV-DT 287 (369)
T ss_dssp EEEEBSSS-SEEEEEE--TT-T-STTTBTSEEE--EEE-SSS-------------------S---EE--TT-SEEEE-E-
T ss_pred Eeeccccc-eecccccCCcc-ccchhhcCeEEE--EEECCCC-------------------c-ceeecCCCCccEEe-ec
Confidence 32 2233 23233333456 789999999999 4443321 1 34555776655555 11
Q ss_pred EEEeCCCcEEEEcCCC
Q 003822 768 LLASTDHCDKECSHGQ 783 (793)
Q Consensus 768 ltaS~Dg~VkvW~~~~ 783 (793)
.++...++|-+++...
T Consensus 288 ~~~~~~~~v~viD~~t 303 (369)
T PF02239_consen 288 FLNPDADTVQVIDKKT 303 (369)
T ss_dssp TT-SSHT-EEEEECCG
T ss_pred cCCCCCceEEEEECcC
Confidence 2234456666666543
No 217
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.32 E-value=1.1e-10 Score=118.26 Aligned_cols=154 Identities=18% Similarity=0.322 Sum_probs=109.4
Q ss_pred EEEEEccCCCEEEEEEC---C-------CcEEEEECCC-CcEEEEEcccCCCCeEEEEEcCCCCcEEEE--EeCCCeEEE
Q 003822 554 TSVHVNSMDELFLASGY---S-------KNIALYDINS-GRRLQVFADMHKEHINVVKFSNHSPSIFAT--SSFDQDVKL 620 (793)
Q Consensus 554 ~sv~~s~~~~~lla~g~---D-------g~I~IWDl~t-g~~l~~~~~gh~~~V~sv~fspdg~~~LaT--gs~Dg~IrI 620 (793)
..+.|++.|..+++-.. | |...+|.++. +.++..+.-...++|.+++|+|+| ..||+ |..++.|.+
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g-~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNG-NEFAVIYGSMPAKVTL 87 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCC-CEEEEEEccCCcccEE
Confidence 45678788877666543 1 3355555532 344444442245679999999999 45433 446789999
Q ss_pred EECCCCCccceEEccCCCCeEEEEEecCCCEEEEEeC---CCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCCCeE
Q 003822 621 WDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLVSAV---DNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNGRDY 697 (793)
Q Consensus 621 WDlrt~~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs~---Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg~~~ 697 (793)
||++. .++..+.. .....+.|+|+|++|++|+. .|.+.+||..+.+.+.+.. +.....++|+|+|+ +
T Consensus 88 yd~~~---~~i~~~~~-~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-----~~~~t~~~WsPdGr-~ 157 (194)
T PF08662_consen 88 YDVKG---KKIFSFGT-QPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-----HSDATDVEWSPDGR-Y 157 (194)
T ss_pred EcCcc---cEeEeecC-CCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-----cCcEEEEEEcCCCC-E
Confidence 99973 45555543 34456999999999999874 3679999999888877663 34578999999999 7
Q ss_pred EEEEeC------CCcEEEEEEcCCCcEEE
Q 003822 698 IVSGSC------DEHVVRICCAQTGRRLR 720 (793)
Q Consensus 698 L~Sgs~------Dg~II~IWDv~tg~~l~ 720 (793)
+++++. |..+ +||++ +|+++.
T Consensus 158 ~~ta~t~~r~~~dng~-~Iw~~-~G~~l~ 184 (194)
T PF08662_consen 158 LATATTSPRLRVDNGF-KIWSF-QGRLLY 184 (194)
T ss_pred EEEEEeccceeccccE-EEEEe-cCeEeE
Confidence 777664 6777 99998 577776
No 218
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.31 E-value=1.1e-11 Score=135.27 Aligned_cols=215 Identities=19% Similarity=0.238 Sum_probs=153.8
Q ss_pred cCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcccccccCCceeEecCCCCeEEEEEccC--CCEEEEEECCC
Q 003822 495 FGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSM--DELFLASGYSK 572 (793)
Q Consensus 495 ~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~--~~~lla~g~Dg 572 (793)
.||++.|.++.|+ .+|.+|++|+.|-.+.|||.-..+... .+.-.|...|.++.|-|. +..+++++.|.
T Consensus 47 ~GH~GCVN~LeWn-~dG~lL~SGSDD~r~ivWd~~~~Kllh--------sI~TgHtaNIFsvKFvP~tnnriv~sgAgDk 117 (758)
T KOG1310|consen 47 TGHTGCVNCLEWN-ADGELLASGSDDTRLIVWDPFEYKLLH--------SISTGHTANIFSVKFVPYTNNRIVLSGAGDK 117 (758)
T ss_pred ccccceecceeec-CCCCEEeecCCcceEEeecchhcceee--------eeecccccceeEEeeeccCCCeEEEeccCcc
Confidence 3999999999998 899999999999999999987654422 334456678899999875 34566666899
Q ss_pred cEEEEECCCC----------cEEEEEcccCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEECCCCC-ccceEEc-----cC
Q 003822 573 NIALYDINSG----------RRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKP-IQPCYTA-----SS 636 (793)
Q Consensus 573 ~I~IWDl~tg----------~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~Dg~IrIWDlrt~~-~~~~~~l-----~~ 636 (793)
.|+++|+... .....+. .|...|..++-.|++|+.+.+++.||+|+-+|+|... +.+.... .-
T Consensus 118 ~i~lfdl~~~~~~~~d~~~~~~~~~~~-cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny 196 (758)
T KOG1310|consen 118 LIKLFDLDSSKEGGMDHGMEETTRCWS-CHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNY 196 (758)
T ss_pred eEEEEecccccccccccCccchhhhhh-hhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHh
Confidence 9999999852 2333444 6999999999999999999999999999999999741 1111100 00
Q ss_pred C---CCeEEEEEecC-CCEEEEEeCCCeEEEEEcCC--------Cc----------EEEEEeeecCCC-----------C
Q 003822 637 S---KGNVMVCFSPD-DHYLLVSAVDNEVRQLLAVD--------GR----------VHLNFGITATGS-----------S 683 (793)
Q Consensus 637 ~---~~~vsv~fSpd-g~~Lasgs~Dg~I~IwDl~t--------g~----------~~~~l~~~~~~~-----------~ 683 (793)
+ ...-++..+|. ..+|++|+.|-..++||.+. |. ++..|. +.|. .
T Consensus 197 ~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~--p~hlkn~~gn~~~~~~ 274 (758)
T KOG1310|consen 197 NPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFS--PGHLKNSQGNLDRYIT 274 (758)
T ss_pred chhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheec--CccccCccccccccee
Confidence 1 11225888885 56889999999999999421 11 122221 1111 1
Q ss_pred CcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEEeee
Q 003822 684 QNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRLRDIS 723 (793)
Q Consensus 684 ~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~ 723 (793)
...-+.|+|+|..+|++-+.+ .| +++|+..++....+.
T Consensus 275 ~~t~vtfnpNGtElLvs~~gE-hV-Ylfdvn~~~~~~~y~ 312 (758)
T KOG1310|consen 275 CCTYVTFNPNGTELLVSWGGE-HV-YLFDVNEDKSPTPYF 312 (758)
T ss_pred eeEEEEECCCCcEEEEeeCCe-EE-EEEeecCCCCceeec
Confidence 134567999999778776655 67 999999888766333
No 219
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.29 E-value=1.5e-09 Score=124.12 Aligned_cols=218 Identities=9% Similarity=0.013 Sum_probs=142.8
Q ss_pred CeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEc---CCcEEEEEcCCCCCcccccccCCceeEecCCCC
Q 003822 476 GEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSD---NGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQ 552 (793)
Q Consensus 476 G~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~---DgtV~vWDl~~~~~~~~~~~~~~~~~~~~~~~~ 552 (793)
..|.+||.+.... ..+. .|...+...+|+ ++|+.|+..+. +..|.+||+.+++.... ......
T Consensus 182 ~~l~~~d~dg~~~-~~lt--~~~~~v~~p~wS-pDG~~lay~s~~~g~~~i~~~dl~~g~~~~l----------~~~~g~ 247 (435)
T PRK05137 182 KRLAIMDQDGANV-RYLT--DGSSLVLTPRFS-PNRQEITYMSYANGRPRVYLLDLETGQRELV----------GNFPGM 247 (435)
T ss_pred eEEEEECCCCCCc-EEEe--cCCCCeEeeEEC-CCCCEEEEEEecCCCCEEEEEECCCCcEEEe----------ecCCCc
Confidence 4788999865443 3443 567789999998 78888887763 46899999988654211 112244
Q ss_pred eEEEEEccCCCEEEEEE-CCC--cEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEe-CCC--eEEEEECCCC
Q 003822 553 LTSVHVNSMDELFLASG-YSK--NIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSS-FDQ--DVKLWDLRQK 626 (793)
Q Consensus 553 V~sv~~s~~~~~lla~g-~Dg--~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs-~Dg--~IrIWDlrt~ 626 (793)
+...+|+|++..++.+. .++ .|++||+.++... .+. .+........|+|+| ..++..+ .+| .|.+||+.++
T Consensus 248 ~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~Lt-~~~~~~~~~~~spDG-~~i~f~s~~~g~~~Iy~~d~~g~ 324 (435)
T PRK05137 248 TFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTT-RLT-DSPAIDTSPSYSPDG-SQIVFESDRSGSPQLYVMNADGS 324 (435)
T ss_pred ccCcEECCCCCEEEEEEecCCCceEEEEECCCCceE-Ecc-CCCCccCceeEcCCC-CEEEEEECCCCCCeEEEEECCCC
Confidence 66788999998876554 444 4888899877654 444 366667789999999 5665555 343 5888898776
Q ss_pred CccceEEccCCCCeEEEEEecCCCEEEEEeCC---CeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCCCeEEEEEeC
Q 003822 627 PIQPCYTASSSKGNVMVCFSPDDHYLLVSAVD---NEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNGRDYIVSGSC 703 (793)
Q Consensus 627 ~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs~D---g~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~ 703 (793)
....+.. +........|+|+|++|+..+.+ ..|.+||+.++.. ..+. ....+....|+|||+.+++++..
T Consensus 325 ~~~~lt~--~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt----~~~~~~~p~~spDG~~i~~~~~~ 397 (435)
T PRK05137 325 NPRRISF--GGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILT----SGFLVEGPTWAPNGRVIMFFRQT 397 (435)
T ss_pred CeEEeec--CCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-Eecc----CCCCCCCCeECCCCCEEEEEEcc
Confidence 4443322 12223347899999999887643 3688889765543 3332 11235678899999944444433
Q ss_pred CC-----cEEEEEEcCCCcE
Q 003822 704 DE-----HVVRICCAQTGRR 718 (793)
Q Consensus 704 Dg-----~II~IWDv~tg~~ 718 (793)
.+ .+ +++|+..+..
T Consensus 398 ~~~~~~~~L-~~~dl~g~~~ 416 (435)
T PRK05137 398 PGSGGAPKL-YTVDLTGRNE 416 (435)
T ss_pred CCCCCcceE-EEEECCCCce
Confidence 32 34 7777765544
No 220
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.29 E-value=3.8e-10 Score=128.81 Aligned_cols=215 Identities=12% Similarity=0.060 Sum_probs=139.6
Q ss_pred CeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcC---CcEEEEEcCCCCCcccccccCCceeEecCCCC
Q 003822 476 GEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDN---GSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQ 552 (793)
Q Consensus 476 G~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~D---gtV~vWDl~~~~~~~~~~~~~~~~~~~~~~~~ 552 (793)
.+|.+||....... .+. .+...+.+..|+ ++++.|+.++.+ ..|.+||+.+++..... .....
T Consensus 184 ~~l~i~D~~g~~~~-~lt--~~~~~v~~p~wS-pDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~----------~~~g~ 249 (433)
T PRK04922 184 YALQVADSDGYNPQ-TIL--RSAEPILSPAWS-PDGKKLAYVSFERGRSAIYVQDLATGQRELVA----------SFRGI 249 (433)
T ss_pred EEEEEECCCCCCce-Eee--cCCCccccccCC-CCCCEEEEEecCCCCcEEEEEECCCCCEEEec----------cCCCC
Confidence 46899998654433 333 556789999998 789888887643 46999999876542110 11123
Q ss_pred eEEEEEccCCCEEEEE-ECCC--cEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEe-CCCe--EEEEECCCC
Q 003822 553 LTSVHVNSMDELFLAS-GYSK--NIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSS-FDQD--VKLWDLRQK 626 (793)
Q Consensus 553 V~sv~~s~~~~~lla~-g~Dg--~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs-~Dg~--IrIWDlrt~ 626 (793)
..+..|+|++..++.+ +.+| .|++||+.+++... +. .+.......+|+|+| ..++.++ .+|. |.++|+.++
T Consensus 250 ~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~-lt-~~~~~~~~~~~spDG-~~l~f~sd~~g~~~iy~~dl~~g 326 (433)
T PRK04922 250 NGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTR-LT-NHFGIDTEPTWAPDG-KSIYFTSDRGGRPQIYRVAASGG 326 (433)
T ss_pred ccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeEE-Cc-cCCCCccceEECCCC-CEEEEEECCCCCceEEEEECCCC
Confidence 4567899999887655 3444 69999999887543 44 355556788999999 5555554 4554 666777665
Q ss_pred CccceEEccCCCCeEEEEEecCCCEEEEEeCCC---eEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCCCeEEEEEeC
Q 003822 627 PIQPCYTASSSKGNVMVCFSPDDHYLLVSAVDN---EVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNGRDYIVSGSC 703 (793)
Q Consensus 627 ~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs~Dg---~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~ 703 (793)
+...+ +..+ ......+|+|||++|+..+.++ .|.+||+.+++.. .+. .........|+|||+ +|+..+.
T Consensus 327 ~~~~l-t~~g-~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt----~~~~~~~p~~spdG~-~i~~~s~ 398 (433)
T PRK04922 327 SAERL-TFQG-NYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT----PGSLDESPSFAPNGS-MVLYATR 398 (433)
T ss_pred CeEEe-ecCC-CCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC----CCCCCCCceECCCCC-EEEEEEe
Confidence 43332 2222 2223589999999998876443 6999999888754 332 112344578999999 5554444
Q ss_pred C-C--cEEEEEEcCCC
Q 003822 704 D-E--HVVRICCAQTG 716 (793)
Q Consensus 704 D-g--~II~IWDv~tg 716 (793)
+ + .+ .++++..+
T Consensus 399 ~~g~~~L-~~~~~~g~ 413 (433)
T PRK04922 399 EGGRGVL-AAVSTDGR 413 (433)
T ss_pred cCCceEE-EEEECCCC
Confidence 2 3 34 77777433
No 221
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.29 E-value=4.2e-10 Score=114.09 Aligned_cols=158 Identities=20% Similarity=0.369 Sum_probs=110.1
Q ss_pred EEEEEeeCCCCEEEEEEc----------CCcEEEEEcCCCCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEE--
Q 003822 502 LGLCWLKKYPSKLIAGSD----------NGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASG-- 569 (793)
Q Consensus 502 ~sv~fs~~~g~~Lasgs~----------DgtV~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g-- 569 (793)
..+.|+ ++|++|+.-.. -|...+|.++..... ...+.....++|.+++|+|++..+++..
T Consensus 9 ~~~~W~-~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~-------~~~i~l~~~~~I~~~~WsP~g~~favi~g~ 80 (194)
T PF08662_consen 9 AKLHWQ-PSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIP-------VESIELKKEGPIHDVAWSPNGNEFAVIYGS 80 (194)
T ss_pred EEEEec-ccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCc-------cceeeccCCCceEEEEECcCCCEEEEEEcc
Confidence 356676 56655443322 134556666443221 1233344446799999999999886653
Q ss_pred CCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeC---CCeEEEEECCCCCccceEEccCCCCeEEEEEe
Q 003822 570 YSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSF---DQDVKLWDLRQKPIQPCYTASSSKGNVMVCFS 646 (793)
Q Consensus 570 ~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~---Dg~IrIWDlrt~~~~~~~~l~~~~~~vsv~fS 646 (793)
.++.|.+||++ ++.+..+. ...++.+.|+|+| +++++|+. .|.|.+||.++. ..+... .+.....++|+
T Consensus 81 ~~~~v~lyd~~-~~~i~~~~---~~~~n~i~wsP~G-~~l~~~g~~n~~G~l~~wd~~~~--~~i~~~-~~~~~t~~~Ws 152 (194)
T PF08662_consen 81 MPAKVTLYDVK-GKKIFSFG---TQPRNTISWSPDG-RFLVLAGFGNLNGDLEFWDVRKK--KKISTF-EHSDATDVEWS 152 (194)
T ss_pred CCcccEEEcCc-ccEeEeec---CCCceEEEECCCC-CEEEEEEccCCCcEEEEEECCCC--EEeecc-ccCcEEEEEEc
Confidence 46899999997 77777764 4677899999999 78888775 467999999965 334443 34456679999
Q ss_pred cCCCEEEEEeC------CCeEEEEEcCCCcEEEEEe
Q 003822 647 PDDHYLLVSAV------DNEVRQLLAVDGRVHLNFG 676 (793)
Q Consensus 647 pdg~~Lasgs~------Dg~I~IwDl~tg~~~~~l~ 676 (793)
|+|+++++++. |+.++||+. +|+.+....
T Consensus 153 PdGr~~~ta~t~~r~~~dng~~Iw~~-~G~~l~~~~ 187 (194)
T PF08662_consen 153 PDGRYLATATTSPRLRVDNGFKIWSF-QGRLLYKKP 187 (194)
T ss_pred CCCCEEEEEEeccceeccccEEEEEe-cCeEeEecc
Confidence 99999999874 788999997 577766553
No 222
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.28 E-value=2.9e-09 Score=110.43 Aligned_cols=240 Identities=10% Similarity=0.133 Sum_probs=159.8
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEE-EEcC------CcEEEEEc
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIA-GSDN------GSLKLYDI 528 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Las-gs~D------gtV~vWDl 528 (793)
...++|+- |...+++|..+| .+||+.+.-+...........-.+..+-| ..++++- ||.+ ..|-|||=
T Consensus 8 ~lsvs~NQ-D~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLf---R~N~laLVGGg~~pky~pNkviIWDD 82 (346)
T KOG2111|consen 8 TLSVSFNQ-DHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLF---RSNYLALVGGGSRPKYPPNKVIIWDD 82 (346)
T ss_pred eeEEEEcc-CCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhh---hhceEEEecCCCCCCCCCceEEEEec
Confidence 56689999 888999999877 89999875332222211111122333333 2345443 3322 46999994
Q ss_pred CCCCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECC-CCcEEEEEcc-cCCCCeEEEEEcCCCC
Q 003822 529 RHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDIN-SGRRLQVFAD-MHKEHINVVKFSNHSP 606 (793)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~-tg~~l~~~~~-gh~~~V~sv~fspdg~ 606 (793)
....+ ...+....+|.+|.+. .+.+++ -..+.|+||... .-+.++.+.. .......++.-+...
T Consensus 83 ~k~~~----------i~el~f~~~I~~V~l~--r~riVv-vl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k- 148 (346)
T KOG2111|consen 83 LKERC----------IIELSFNSEIKAVKLR--RDRIVV-VLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNK- 148 (346)
T ss_pred ccCcE----------EEEEEeccceeeEEEc--CCeEEE-EecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCc-
Confidence 33322 3344555789999883 334443 356889999987 4556665542 112233333322222
Q ss_pred cEEEE-EeCCCeEEEEECCCCCccceEEccCCCCeE-EEEEecCCCEEEEEeCCCe-EEEEEcCCCcEEEEEeeecCCCC
Q 003822 607 SIFAT-SSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLVSAVDNE-VRQLLAVDGRVHLNFGITATGSS 683 (793)
Q Consensus 607 ~~LaT-gs~Dg~IrIWDlrt~~~~~~~~l~~~~~~v-sv~fSpdg~~Lasgs~Dg~-I~IwDl~tg~~~~~l~~~~~~~~ 683 (793)
.+||. |-.-|.|.|-|+...+..+...+..|...+ +++.+-+|..+|++|..|+ |||||..+|..+.++... ..+.
T Consensus 149 ~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG-~d~A 227 (346)
T KOG2111|consen 149 SLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRG-VDRA 227 (346)
T ss_pred eEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecC-Cchh
Confidence 34443 445689999999886553345556677666 5999999999999999886 699999999999988642 3456
Q ss_pred CcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCc
Q 003822 684 QNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGR 717 (793)
Q Consensus 684 ~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~ 717 (793)
.++.++|+|+.. +|+++|+-|++ +|+.+....
T Consensus 228 ~iy~iaFSp~~s-~LavsSdKgTl-HiF~l~~~~ 259 (346)
T KOG2111|consen 228 DIYCIAFSPNSS-WLAVSSDKGTL-HIFSLRDTE 259 (346)
T ss_pred eEEEEEeCCCcc-EEEEEcCCCeE-EEEEeecCC
Confidence 799999999999 99999999999 999887643
No 223
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.28 E-value=5.1e-10 Score=127.50 Aligned_cols=220 Identities=12% Similarity=0.091 Sum_probs=135.7
Q ss_pred CeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcC---CcEEEEEcCCCCCcccccccCCceeEecCCCC
Q 003822 476 GEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDN---GSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQ 552 (793)
Q Consensus 476 G~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~D---gtV~vWDl~~~~~~~~~~~~~~~~~~~~~~~~ 552 (793)
..|.+||... .....+. .+...+.+.+|+ ++|+.|+.++.+ ..|.+||+.+++.... ......
T Consensus 176 ~~L~~~D~dG-~~~~~l~--~~~~~v~~p~wS-PDG~~la~~s~~~~~~~I~~~dl~~g~~~~l----------~~~~g~ 241 (427)
T PRK02889 176 YQLQISDADG-QNAQSAL--SSPEPIISPAWS-PDGTKLAYVSFESKKPVVYVHDLATGRRRVV----------ANFKGS 241 (427)
T ss_pred cEEEEECCCC-CCceEec--cCCCCcccceEc-CCCCEEEEEEccCCCcEEEEEECCCCCEEEe----------ecCCCC
Confidence 4677778753 3333333 566789999998 788888877643 3599999988654211 111234
Q ss_pred eEEEEEccCCCEEEEE-ECCCcEEEE--ECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEE-EEeCCCeEEEEEC--CCC
Q 003822 553 LTSVHVNSMDELFLAS-GYSKNIALY--DINSGRRLQVFADMHKEHINVVKFSNHSPSIFA-TSSFDQDVKLWDL--RQK 626 (793)
Q Consensus 553 V~sv~~s~~~~~lla~-g~Dg~I~IW--Dl~tg~~l~~~~~gh~~~V~sv~fspdg~~~La-Tgs~Dg~IrIWDl--rt~ 626 (793)
+....|+|++..++.+ +.+|...|| |+..+. ...+. .+........|+|+| +.++ ++..+|...+|.+ .++
T Consensus 242 ~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt-~~~~~~~~~~wSpDG-~~l~f~s~~~g~~~Iy~~~~~~g 318 (427)
T PRK02889 242 NSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLT-QSSGIDTEPFFSPDG-RSIYFTSDRGGAPQIYRMPASGG 318 (427)
T ss_pred ccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECC-CCCCCCcCeEEcCCC-CEEEEEecCCCCcEEEEEECCCC
Confidence 5678999999888765 456665555 555444 44554 355556778999999 5555 4444566666654 444
Q ss_pred CccceEEccCCCCeEEEEEecCCCEEEEEeCCC---eEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCCCeEEEEEeC
Q 003822 627 PIQPCYTASSSKGNVMVCFSPDDHYLLVSAVDN---EVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNGRDYIVSGSC 703 (793)
Q Consensus 627 ~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs~Dg---~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~ 703 (793)
.... ....+ .......|+|||++|+..+.++ .|.+||+.+++.. .+. .........|+|||+.++++...
T Consensus 319 ~~~~-lt~~g-~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~-~lt----~~~~~~~p~~spdg~~l~~~~~~ 391 (427)
T PRK02889 319 AAQR-VTFTG-SYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVT-ALT----DTTRDESPSFAPNGRYILYATQQ 391 (427)
T ss_pred ceEE-EecCC-CCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeE-Ecc----CCCCccCceECCCCCEEEEEEec
Confidence 3222 22222 1223578999999999877654 6999999888753 232 11233567899999944444444
Q ss_pred CCcE-EEEEEcCCCcEEE
Q 003822 704 DEHV-VRICCAQTGRRLR 720 (793)
Q Consensus 704 Dg~I-I~IWDv~tg~~l~ 720 (793)
.|.- +.+-++ +|+..+
T Consensus 392 ~g~~~l~~~~~-~g~~~~ 408 (427)
T PRK02889 392 GGRSVLAAVSS-DGRIKQ 408 (427)
T ss_pred CCCEEEEEEEC-CCCceE
Confidence 4433 244445 344444
No 224
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.28 E-value=1e-09 Score=125.28 Aligned_cols=178 Identities=16% Similarity=0.183 Sum_probs=118.2
Q ss_pred CcEEEEEcCCCCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEEC---CCcEEEEECCCCcEEEEEcccCCCCeE
Q 003822 521 GSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY---SKNIALYDINSGRRLQVFADMHKEHIN 597 (793)
Q Consensus 521 gtV~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~---Dg~I~IWDl~tg~~l~~~~~gh~~~V~ 597 (793)
..|.+||....... ....+...+.+..|+|++..++.++. ...|++||+.+++.... . .+.+...
T Consensus 184 ~~l~i~D~~g~~~~----------~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l-~-~~~g~~~ 251 (433)
T PRK04922 184 YALQVADSDGYNPQ----------TILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELV-A-SFRGING 251 (433)
T ss_pred EEEEEECCCCCCce----------EeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEe-c-cCCCCcc
Confidence 36888988654321 11223456888999999998888874 34699999998875433 2 2444556
Q ss_pred EEEEcCCCCcEEEEEeCCC--eEEEEECCCCCccceEEccCCCCe-EEEEEecCCCEEEEEeC-CC--eEEEEEcCCCcE
Q 003822 598 VVKFSNHSPSIFATSSFDQ--DVKLWDLRQKPIQPCYTASSSKGN-VMVCFSPDDHYLLVSAV-DN--EVRQLLAVDGRV 671 (793)
Q Consensus 598 sv~fspdg~~~LaTgs~Dg--~IrIWDlrt~~~~~~~~l~~~~~~-vsv~fSpdg~~Lasgs~-Dg--~I~IwDl~tg~~ 671 (793)
+.+|+|+|..++++.+.+| .|.+||+.++.... +..+... ...+|+|||++|+.++. +| .|+++|+.+++.
T Consensus 252 ~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~---lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~ 328 (433)
T PRK04922 252 APSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTR---LTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSA 328 (433)
T ss_pred CceECCCCCEEEEEEeCCCCceEEEEECCCCCeEE---CccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCe
Confidence 7899999955555666666 59999998875433 2223222 35899999999988764 44 477778777764
Q ss_pred EEEEeeecCCCCCcEEEEEeeCCCeEEEEEeCC-C--cEEEEEEcCCCcEE
Q 003822 672 HLNFGITATGSSQNYTRSYYLNGRDYIVSGSCD-E--HVVRICCAQTGRRL 719 (793)
Q Consensus 672 ~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~D-g--~II~IWDv~tg~~l 719 (793)
. .+.. ........+|+|+|+ +|+..+.+ + .+ .+||+.+++..
T Consensus 329 ~-~lt~---~g~~~~~~~~SpDG~-~Ia~~~~~~~~~~I-~v~d~~~g~~~ 373 (433)
T PRK04922 329 E-RLTF---QGNYNARASVSPDGK-KIAMVHGSGGQYRI-AVMDLSTGSVR 373 (433)
T ss_pred E-Eeec---CCCCccCEEECCCCC-EEEEEECCCCceeE-EEEECCCCCeE
Confidence 3 2321 222344689999999 66554433 2 46 99999888754
No 225
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.26 E-value=1.7e-10 Score=122.13 Aligned_cols=203 Identities=12% Similarity=0.155 Sum_probs=155.9
Q ss_pred CEEEEEeCCCeEEEEECCCCe----EEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcC--CcEEEEEcCCCCCccccccc
Q 003822 467 CLMVFGTLDGEIVVVNHENEN----IVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDN--GSLKLYDIRHMPPSIRGMHY 540 (793)
Q Consensus 467 ~~Lasgs~DG~I~VWd~~t~~----~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~D--gtV~vWDl~~~~~~~~~~~~ 540 (793)
..|++|..+|.+.+|..+.+. ....+. .+ ..+..+.-.+.....+++|+.. ..+++||++..++.+.....
T Consensus 116 g~Litc~~sG~l~~~~~k~~d~hss~l~~la--~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNv 192 (412)
T KOG3881|consen 116 GTLITCVSSGNLQVRHDKSGDLHSSKLIKLA--TG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNV 192 (412)
T ss_pred CEEEEEecCCcEEEEeccCCccccccceeee--cC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCC
Confidence 578888999999999988443 222222 12 4566666665667788889998 88999999998665554443
Q ss_pred CCceeEecCCCCeEEEEEccC--CCEEEEEECCCcEEEEECCCC-cEEEEEcccCCCCeEEEEEcCCCCcEEEEEeCCCe
Q 003822 541 GAGTVTFDEFDQLTSVHVNSM--DELFLASGYSKNIALYDINSG-RRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQD 617 (793)
Q Consensus 541 ~~~~~~~~~~~~V~sv~~s~~--~~~lla~g~Dg~I~IWDl~tg-~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~Dg~ 617 (793)
.........+-.++++.|-+. ...|++++.-+.+++||.+.+ +++..|. --..+++++...|.+ +++++|..-|.
T Consensus 193 pnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd-~~E~~is~~~l~p~g-n~Iy~gn~~g~ 270 (412)
T KOG3881|consen 193 PNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFD-FLENPISSTGLTPSG-NFIYTGNTKGQ 270 (412)
T ss_pred CCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEec-cccCcceeeeecCCC-cEEEEecccch
Confidence 333333334455788888877 678888888999999999975 5778887 467899999999999 89999999999
Q ss_pred EEEEECCCCCccceEEccCCCCeE-EEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEE
Q 003822 618 VKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNF 675 (793)
Q Consensus 618 IrIWDlrt~~~~~~~~l~~~~~~v-sv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l 675 (793)
+..||+++++.. ...+.+..+.+ ++..+|.++++++++-|..+||+|+.+.+++...
T Consensus 271 l~~FD~r~~kl~-g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kv 328 (412)
T KOG3881|consen 271 LAKFDLRGGKLL-GCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKV 328 (412)
T ss_pred hheecccCceee-ccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhh
Confidence 999999997533 22345555555 4999999999999999999999999997665544
No 226
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.26 E-value=2e-09 Score=119.82 Aligned_cols=253 Identities=12% Similarity=0.149 Sum_probs=159.7
Q ss_pred EEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEE-cCCcEEEEEcCCCCCcc
Q 003822 457 RQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGS-DNGSLKLYDIRHMPPSI 535 (793)
Q Consensus 457 ~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs-~DgtV~vWDl~~~~~~~ 535 (793)
..+.|+| |++++++.+.||.|.++|+.+++.+..++. + ....+++++ ++|++++++. .++.+.++|.++.+...
T Consensus 40 ~~~~~s~-Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~-G--~~~~~i~~s-~DG~~~~v~n~~~~~v~v~D~~tle~v~ 114 (369)
T PF02239_consen 40 AGLKFSP-DGRYLYVANRDGTVSVIDLATGKVVATIKV-G--GNPRGIAVS-PDGKYVYVANYEPGTVSVIDAETLEPVK 114 (369)
T ss_dssp EEEE-TT--SSEEEEEETTSEEEEEETTSSSEEEEEE--S--SEEEEEEE---TTTEEEEEEEETTEEEEEETTT--EEE
T ss_pred eEEEecC-CCCEEEEEcCCCeEEEEECCcccEEEEEec-C--CCcceEEEc-CCCCEEEEEecCCCceeEecccccccee
Confidence 3467899 999999999999999999999999999874 2 346788987 7999888775 68999999999866522
Q ss_pred cccccCCceeEecCCCCeEEEEEccCCCEEEEEECC-CcEEEEECCCCcEEE--EEcccCCCCeEEEEEcCCCCcEEEEE
Q 003822 536 RGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYS-KNIALYDINSGRRLQ--VFADMHKEHINVVKFSNHSPSIFATS 612 (793)
Q Consensus 536 ~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~D-g~I~IWDl~tg~~l~--~~~~gh~~~V~sv~fspdg~~~LaTg 612 (793)
........ .-.....+.++..++....+++.-.| +.|.+.|....+.+. .+. .........|+|++..++++.
T Consensus 115 ~I~~~~~~--~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~--~g~~~~D~~~dpdgry~~va~ 190 (369)
T PF02239_consen 115 TIPTGGMP--VDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIK--VGRFPHDGGFDPDGRYFLVAA 190 (369)
T ss_dssp EEE--EE---TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE----TTEEEEEE-TTSSEEEEEE
T ss_pred eccccccc--ccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeec--ccccccccccCcccceeeecc
Confidence 11110000 00022457788777888877777754 889888987755433 333 455677899999994444545
Q ss_pred eCCCeEEEEECCCCCccceE-----------------------------------------------------EccCCCC
Q 003822 613 SFDQDVKLWDLRQKPIQPCY-----------------------------------------------------TASSSKG 639 (793)
Q Consensus 613 s~Dg~IrIWDlrt~~~~~~~-----------------------------------------------------~l~~~~~ 639 (793)
..+..|-++|.++++..... .++...+
T Consensus 191 ~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~ 270 (369)
T PF02239_consen 191 NGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGG 270 (369)
T ss_dssp GGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSS
T ss_pred cccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCC
Confidence 55677888887764211110 0111111
Q ss_pred eEEEEEecCCCEEEEE----eCCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCCCeEEEEEeCCC-cEEEEEEcC
Q 003822 640 NVMVCFSPDDHYLLVS----AVDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNGRDYIVSGSCDE-HVVRICCAQ 714 (793)
Q Consensus 640 ~vsv~fSpdg~~Lasg----s~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg-~II~IWDv~ 714 (793)
..-+..+|+++++++. ...+.|.++|..+.+...++.. .....+..+.|+++|+...+|.-..+ .| .|||..
T Consensus 271 glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~--~~~~~~~h~ef~~dG~~v~vS~~~~~~~i-~v~D~~ 347 (369)
T PF02239_consen 271 GLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITP--GPGKRVVHMEFNPDGKEVWVSVWDGNGAI-VVYDAK 347 (369)
T ss_dssp S--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHH--HHT--EEEEEE-TTSSEEEEEEE--TTEE-EEEETT
T ss_pred cceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEec--cCCCcEeccEECCCCCEEEEEEecCCCEE-EEEECC
Confidence 2346779999999998 3458999999999977766642 22234888999999996556655544 68 999999
Q ss_pred CCcEEEe
Q 003822 715 TGRRLRD 721 (793)
Q Consensus 715 tg~~l~~ 721 (793)
|.+.++.
T Consensus 348 Tl~~~~~ 354 (369)
T PF02239_consen 348 TLKEKKR 354 (369)
T ss_dssp TTEEEEE
T ss_pred CcEEEEE
Confidence 9999993
No 227
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.23 E-value=1.5e-09 Score=123.66 Aligned_cols=212 Identities=13% Similarity=0.076 Sum_probs=137.3
Q ss_pred eEEEEEeCCCCCEEEEEeC---CCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEE-EcCC--cEEEEEcC
Q 003822 456 PRQFEYHPSISCLMVFGTL---DGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAG-SDNG--SLKLYDIR 529 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~---DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasg-s~Dg--tV~vWDl~ 529 (793)
+...+|+| +++.|+..+. +..|.+|++.+++........+ .+..+.|+ ++|+.|+.. +.+| .|.+||+.
T Consensus 201 ~~~p~wSP-DG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~---~~~~~~~S-PDG~~La~~~~~~g~~~I~~~d~~ 275 (429)
T PRK03629 201 LMSPAWSP-DGSKLAYVTFESGRSALVIQTLANGAVRQVASFPR---HNGAPAFS-PDGSKLAFALSKTGSLNLYVMDLA 275 (429)
T ss_pred eeeeEEcC-CCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCC---CcCCeEEC-CCCCEEEEEEcCCCCcEEEEEECC
Confidence 77899999 8888886542 4579999998886544332223 34567898 788877754 4455 48889998
Q ss_pred CCCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEEC-CC--cEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCC
Q 003822 530 HMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY-SK--NIALYDINSGRRLQVFADMHKEHINVVKFSNHSP 606 (793)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~-Dg--~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~ 606 (793)
+++.. .+ ..+...+....|+|++..++.++. ++ .|+++|+.+++.. .+. .+........|+|+|
T Consensus 276 tg~~~--~l--------t~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt-~~~~~~~~~~~SpDG- 342 (429)
T PRK03629 276 SGQIR--QV--------TDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RIT-WEGSQNQDADVSSDG- 342 (429)
T ss_pred CCCEE--Ec--------cCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-Eee-cCCCCccCEEECCCC-
Confidence 76431 11 111234677899999998888775 34 4555577766543 333 234456678999999
Q ss_pred cEEEEEeC-C--CeEEEEECCCCCccceEEccCCCCeEEEEEecCCCEEEEEeCCCe---EEEEEcCCCcEEEEEeeecC
Q 003822 607 SIFATSSF-D--QDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLVSAVDNE---VRQLLAVDGRVHLNFGITAT 680 (793)
Q Consensus 607 ~~LaTgs~-D--g~IrIWDlrt~~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs~Dg~---I~IwDl~tg~~~~~l~~~~~ 680 (793)
+.++..+. + ..|.+||+.++....+. .........|+|||++|+.++.++. +.++++ +|+....+. .
T Consensus 343 ~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt---~~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~-~G~~~~~l~---~ 415 (429)
T PRK03629 343 KFMVMVSSNGGQQHIAKQDLATGGVQVLT---DTFLDETPSIAPNGTMVIYSSSQGMGSVLNLVST-DGRFKARLP---A 415 (429)
T ss_pred CEEEEEEccCCCceEEEEECCCCCeEEeC---CCCCCCCceECCCCCEEEEEEcCCCceEEEEEEC-CCCCeEECc---c
Confidence 56665543 3 35889999887543222 1112234789999999999987764 667776 455545553 2
Q ss_pred CCCCcEEEEEee
Q 003822 681 GSSQNYTRSYYL 692 (793)
Q Consensus 681 ~~~~v~s~afsp 692 (793)
+...+...+|+|
T Consensus 416 ~~~~~~~p~Wsp 427 (429)
T PRK03629 416 TDGQVKFPAWSP 427 (429)
T ss_pred CCCCcCCcccCC
Confidence 334455666765
No 228
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.23 E-value=1.9e-10 Score=125.76 Aligned_cols=172 Identities=20% Similarity=0.223 Sum_probs=122.2
Q ss_pred cCCCEEEEEECCCcEEEEECCCCcEEEEEcc---cCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEECCCC-----C----
Q 003822 560 SMDELFLASGYSKNIALYDINSGRRLQVFAD---MHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQK-----P---- 627 (793)
Q Consensus 560 ~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~---gh~~~V~sv~fspdg~~~LaTgs~Dg~IrIWDlrt~-----~---- 627 (793)
+.+-.++.+-.-|.|.+.|....+..+.+.. ..+..|+++.|-|.+...|+.+-.+|.+.+||..-. .
T Consensus 183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~ 262 (636)
T KOG2394|consen 183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQA 262 (636)
T ss_pred CCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccc
Confidence 3445567776789999998876332222211 234789999999988888999999999999976321 0
Q ss_pred -----c------------cceEEcc-CCCCeEEEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEE
Q 003822 628 -----I------------QPCYTAS-SSKGNVMVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNYTRS 689 (793)
Q Consensus 628 -----~------------~~~~~l~-~~~~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~a 689 (793)
. .|+.... +...+...+|+|||++||+.+.||.+||||..+.+++..++. --....+++
T Consensus 263 ~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkS---YFGGLLCvc 339 (636)
T KOG2394|consen 263 LKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKS---YFGGLLCVC 339 (636)
T ss_pred cCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHh---hccceEEEE
Confidence 0 0111111 111233589999999999999999999999998877554432 223578999
Q ss_pred EeeCCCeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCCCCccceeeeccCCc
Q 003822 690 YYLNGRDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDP 742 (793)
Q Consensus 690 fspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~ 742 (793)
|+|||+ ||++|++|.-| .||.+..++.+. .=+||.+ ||..+..+|
T Consensus 340 WSPDGK-yIvtGGEDDLV-tVwSf~erRVVA--RGqGHkS----WVs~VaFDp 384 (636)
T KOG2394|consen 340 WSPDGK-YIVTGGEDDLV-TVWSFEERRVVA--RGQGHKS----WVSVVAFDP 384 (636)
T ss_pred EcCCcc-EEEecCCcceE-EEEEeccceEEE--ecccccc----ceeeEeecc
Confidence 999999 99999999999 999999999888 5555553 555444443
No 229
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.22 E-value=4.1e-10 Score=122.86 Aligned_cols=210 Identities=13% Similarity=0.137 Sum_probs=135.4
Q ss_pred CCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEE
Q 003822 496 GAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIA 575 (793)
Q Consensus 496 ~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~ 575 (793)
.|...|.++.|+ .+...+.+++.+..++-||+.+....+..... ....+-.|..+ .+..=-...+.++.+++||.+.
T Consensus 12 r~~e~vc~v~w~-~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~-df~pt~~h~~~-rs~~~g~~~d~~~i~s~DGkf~ 88 (737)
T KOG1524|consen 12 RNSEKVCCVDWS-SNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPD-DFVPTDMHLGG-RSSGGGKGSDTLLICSNDGRFV 88 (737)
T ss_pred ccceeEEeeccc-ccceEEEeccCceEEEeecccchhhhhhhCCc-ccCCccccccc-cccCCCCCcceEEEEcCCceEE
Confidence 466778899997 45555555555444555555443332211110 00000011000 0000001345788888999999
Q ss_pred EEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEECCCCCccceEEccCCCCeEEEEEecCCCEEEEE
Q 003822 576 LYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLVS 655 (793)
Q Consensus 576 IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~~~~vsv~fSpdg~~Lasg 655 (793)
+.+- .++....+. +|.+.+.+-.|+|+| .-|+|++.||.|++|.-. +-...+. .+....+.+++|.|+..-++-+
T Consensus 89 il~k-~~rVE~sv~-AH~~A~~~gRW~~dG-tgLlt~GEDG~iKiWSrs-GMLRStl-~Q~~~~v~c~~W~p~S~~vl~c 163 (737)
T KOG1524|consen 89 ILNK-SARVERSIS-AHAAAISSGRWSPDG-AGLLTAGEDGVIKIWSRS-GMLRSTV-VQNEESIRCARWAPNSNSIVFC 163 (737)
T ss_pred Eecc-cchhhhhhh-hhhhhhhhcccCCCC-ceeeeecCCceEEEEecc-chHHHHH-hhcCceeEEEEECCCCCceEEe
Confidence 8764 366666666 799999999999999 789999999999999854 3322222 2334566689999987766555
Q ss_pred eCCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEE
Q 003822 656 AVDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRLR 720 (793)
Q Consensus 656 s~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~ 720 (793)
. .+.+.|=.+.....+..++ .|.+-+.++.|++... ++++|+.|-+. +|||.. |+.+.
T Consensus 164 ~-g~h~~IKpL~~n~k~i~Wk---AHDGiiL~~~W~~~s~-lI~sgGED~kf-KvWD~~-G~~Lf 221 (737)
T KOG1524|consen 164 Q-GGHISIKPLAANSKIIRWR---AHDGLVLSLSWSTQSN-IIASGGEDFRF-KIWDAQ-GANLF 221 (737)
T ss_pred c-CCeEEEeecccccceeEEe---ccCcEEEEeecCcccc-ceeecCCceeE-Eeeccc-Ccccc
Confidence 4 3566666665544444554 5777889999999998 99999999999 999974 45444
No 230
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.18 E-value=3e-08 Score=109.81 Aligned_cols=258 Identities=14% Similarity=0.173 Sum_probs=165.0
Q ss_pred eEEEEEeCCCCCEEEEEeC----CCeEEEEECCC--CeE--EEEEeccCCCCCEEEEEEeeCCCCEEEEEE-cCCcEEEE
Q 003822 456 PRQFEYHPSISCLMVFGTL----DGEIVVVNHEN--ENI--VSYIPSFGAMNSVLGLCWLKKYPSKLIAGS-DNGSLKLY 526 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~----DG~I~VWd~~t--~~~--i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs-~DgtV~vW 526 (793)
+.-++++| ++++|.+... +|.|..|.+.. +++ +..... .......++.. +++++|+++. .+|+|.++
T Consensus 39 Ps~l~~~~-~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~--~g~~p~~i~~~-~~g~~l~vany~~g~v~v~ 114 (345)
T PF10282_consen 39 PSWLAVSP-DGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPS--GGSSPCHIAVD-PDGRFLYVANYGGGSVSVF 114 (345)
T ss_dssp ECCEEE-T-TSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEE--SSSCEEEEEEC-TTSSEEEEEETTTTEEEEE
T ss_pred CceEEEEe-CCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeecc--CCCCcEEEEEe-cCCCEEEEEEccCCeEEEE
Confidence 67789999 8888888876 57899998875 343 333332 23455677776 7888888887 58999999
Q ss_pred EcCCCCCcccc--cccCCce---eEecCCCCeEEEEEccCCCEEEEEEC-CCcEEEEECCCCc--E--EEEEcccCCCCe
Q 003822 527 DIRHMPPSIRG--MHYGAGT---VTFDEFDQLTSVHVNSMDELFLASGY-SKNIALYDINSGR--R--LQVFADMHKEHI 596 (793)
Q Consensus 527 Dl~~~~~~~~~--~~~~~~~---~~~~~~~~V~sv~~s~~~~~lla~g~-Dg~I~IWDl~tg~--~--l~~~~~gh~~~V 596 (793)
++......... ...+.+. ...+......++.++|+++++++... ...|.+|++.... . ...+........
T Consensus 115 ~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GP 194 (345)
T PF10282_consen 115 PLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGP 194 (345)
T ss_dssp EECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSE
T ss_pred EccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCC
Confidence 99874221111 0000000 00012245789999999999988874 5789999998654 3 223332355678
Q ss_pred EEEEEcCCCCcEEEEEeCCCeEEEEECC--CCCccceEEcc-------CCCCeEEEEEecCCCEEEEEeC-CCeEEEEEc
Q 003822 597 NVVKFSNHSPSIFATSSFDQDVKLWDLR--QKPIQPCYTAS-------SSKGNVMVCFSPDDHYLLVSAV-DNEVRQLLA 666 (793)
Q Consensus 597 ~sv~fspdg~~~LaTgs~Dg~IrIWDlr--t~~~~~~~~l~-------~~~~~vsv~fSpdg~~Lasgs~-Dg~I~IwDl 666 (793)
+.++|+|++...+++.-.+++|.+|++. ++....+.... +......++++|||++|+++.. .+.|.+|++
T Consensus 195 Rh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~ 274 (345)
T PF10282_consen 195 RHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDL 274 (345)
T ss_dssp EEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEE
T ss_pred cEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEE
Confidence 8999999995556666678999999998 33222222211 1123445999999999998774 678999998
Q ss_pred --CCCcEEEEEeeecCCCCCcEEEEEeeCCCeEEEEEe-CCCcEEEEEEc--CCCcEEE
Q 003822 667 --VDGRVHLNFGITATGSSQNYTRSYYLNGRDYIVSGS-CDEHVVRICCA--QTGRRLR 720 (793)
Q Consensus 667 --~tg~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs-~Dg~II~IWDv--~tg~~l~ 720 (793)
.+|++. .......+......++++|+|+ +|+++. .++.| .+|++ .+|.+..
T Consensus 275 d~~~g~l~-~~~~~~~~G~~Pr~~~~s~~g~-~l~Va~~~s~~v-~vf~~d~~tG~l~~ 330 (345)
T PF10282_consen 275 DPATGTLT-LVQTVPTGGKFPRHFAFSPDGR-YLYVANQDSNTV-SVFDIDPDTGKLTP 330 (345)
T ss_dssp CTTTTTEE-EEEEEEESSSSEEEEEE-TTSS-EEEEEETTTTEE-EEEEEETTTTEEEE
T ss_pred ecCCCceE-EEEEEeCCCCCccEEEEeCCCC-EEEEEecCCCeE-EEEEEeCCCCcEEE
Confidence 345543 2333334455688999999999 666655 55566 88866 5776554
No 231
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.18 E-value=4.9e-10 Score=122.61 Aligned_cols=179 Identities=15% Similarity=0.219 Sum_probs=133.6
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEEEec--cCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCC----ccccc
Q 003822 465 ISCLMVFGTLDGEIVVVNHENENIVSYIPS--FGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPP----SIRGM 538 (793)
Q Consensus 465 d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~--~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~----~~~~~ 538 (793)
++--+..|-..|.|.+.|....+....+.. .-....|+++.|.+.+...|+++-.+|.+.+||.+.... ....+
T Consensus 184 ~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~ 263 (636)
T KOG2394|consen 184 KGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQAL 263 (636)
T ss_pred CCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCccccc
Confidence 555677888889999988765322111111 112468999999988888999999999999998742111 00000
Q ss_pred cc--------------CCceeEe-cCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcC
Q 003822 539 HY--------------GAGTVTF-DEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSN 603 (793)
Q Consensus 539 ~~--------------~~~~~~~-~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fsp 603 (793)
.. ......+ ...+.|...+|+|++.++++++.||.++|+|..+.+.+..++ ..-+...|++|+|
T Consensus 264 k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mk-SYFGGLLCvcWSP 342 (636)
T KOG2394|consen 264 KDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMK-SYFGGLLCVCWSP 342 (636)
T ss_pred CCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHH-hhccceEEEEEcC
Confidence 00 0001111 123578999999999999999999999999999988887777 3667899999999
Q ss_pred CCCcEEEEEeCCCeEEEEECCCCCccceEEccCCCCeEE-EEEec
Q 003822 604 HSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVM-VCFSP 647 (793)
Q Consensus 604 dg~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~~~~vs-v~fSp 647 (793)
|| ++++||+.|-.|.||.+... +.+..-++|..+++ |+|.|
T Consensus 343 DG-KyIvtGGEDDLVtVwSf~er--RVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 343 DG-KYIVTGGEDDLVTVWSFEER--RVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred Cc-cEEEecCCcceEEEEEeccc--eEEEeccccccceeeEeecc
Confidence 99 99999999999999999876 56677889999997 99997
No 232
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.16 E-value=1.2e-08 Score=116.60 Aligned_cols=176 Identities=13% Similarity=0.129 Sum_probs=117.8
Q ss_pred CcEEEEEcCCCCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEEC---CCcEEEEECCCCcEEEEEcccCCCCeE
Q 003822 521 GSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY---SKNIALYDINSGRRLQVFADMHKEHIN 597 (793)
Q Consensus 521 gtV~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~---Dg~I~IWDl~tg~~l~~~~~gh~~~V~ 597 (793)
..|.+||....... ....+...+.+..|+|++..++.++. +..|++||+.+++... +. .+.+.+.
T Consensus 182 ~~l~~~d~dg~~~~----------~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~-l~-~~~g~~~ 249 (435)
T PRK05137 182 KRLAIMDQDGANVR----------YLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL-VG-NFPGMTF 249 (435)
T ss_pred eEEEEECCCCCCcE----------EEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE-ee-cCCCccc
Confidence 36888887654321 11234457899999999998888763 4689999999887643 33 3666778
Q ss_pred EEEEcCCCCcEEEEEeCCCe--EEEEECCCCCccceEEccCCCCe-EEEEEecCCCEEEEEeC-C--CeEEEEEcCCCcE
Q 003822 598 VVKFSNHSPSIFATSSFDQD--VKLWDLRQKPIQPCYTASSSKGN-VMVCFSPDDHYLLVSAV-D--NEVRQLLAVDGRV 671 (793)
Q Consensus 598 sv~fspdg~~~LaTgs~Dg~--IrIWDlrt~~~~~~~~l~~~~~~-vsv~fSpdg~~Lasgs~-D--g~I~IwDl~tg~~ 671 (793)
..+|+|+|..++++.+.++. |.+||+.++.... +..+... ....|+|||++|+..+. + ..|++||+.++..
T Consensus 250 ~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~---Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~ 326 (435)
T PRK05137 250 APRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTR---LTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP 326 (435)
T ss_pred CcEECCCCCEEEEEEecCCCceEEEEECCCCceEE---ccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe
Confidence 89999999545566666665 7777988764432 3233333 34899999999988774 3 3688889877655
Q ss_pred EEEEeeecCCCCCcEEEEEeeCCCeEEEEEeCC-C--cEEEEEEcCCCc
Q 003822 672 HLNFGITATGSSQNYTRSYYLNGRDYIVSGSCD-E--HVVRICCAQTGR 717 (793)
Q Consensus 672 ~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~D-g--~II~IWDv~tg~ 717 (793)
. .+.. +........|+|+|+ +|+..+.+ + .+ .+||..++.
T Consensus 327 ~-~lt~---~~~~~~~~~~SpdG~-~ia~~~~~~~~~~i-~~~d~~~~~ 369 (435)
T PRK05137 327 R-RISF---GGGRYSTPVWSPRGD-LIAFTKQGGGQFSI-GVMKPDGSG 369 (435)
T ss_pred E-Eeec---CCCcccCeEECCCCC-EEEEEEcCCCceEE-EEEECCCCc
Confidence 3 3321 223345678999999 66554433 2 45 888876554
No 233
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.16 E-value=6.8e-09 Score=118.30 Aligned_cols=161 Identities=15% Similarity=0.130 Sum_probs=105.2
Q ss_pred CCCCeEEEEEccCCCEEEEEECC---CcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEE--C
Q 003822 549 EFDQLTSVHVNSMDELFLASGYS---KNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWD--L 623 (793)
Q Consensus 549 ~~~~V~sv~~s~~~~~lla~g~D---g~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~Dg~IrIWD--l 623 (793)
+...+.+.+|+|++..++.++.+ ..|++||+.+++...... ..+.+...+|+|+|..++++.+.+|...||. +
T Consensus 194 ~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~--~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~ 271 (427)
T PRK02889 194 SPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVAN--FKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNA 271 (427)
T ss_pred CCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeec--CCCCccceEECCCCCEEEEEEccCCCceEEEEEC
Confidence 34567889999999988887742 469999999887644322 4455678999999954445677788766665 4
Q ss_pred CCCCccceEEccCCCCe-EEEEEecCCCEEEEEeC-CCeEEEE--EcCCCcEEEEEeeecCCCCCcEEEEEeeCCCeEEE
Q 003822 624 RQKPIQPCYTASSSKGN-VMVCFSPDDHYLLVSAV-DNEVRQL--LAVDGRVHLNFGITATGSSQNYTRSYYLNGRDYIV 699 (793)
Q Consensus 624 rt~~~~~~~~l~~~~~~-vsv~fSpdg~~Lasgs~-Dg~I~Iw--Dl~tg~~~~~l~~~~~~~~~v~s~afspdg~~~L~ 699 (793)
.++.. ..+..+... ....|+|||++|+..+. +|...+| ++.++.. ..+.. ........+|+|+|+ +|+
T Consensus 272 ~~~~~---~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~-~~lt~---~g~~~~~~~~SpDG~-~Ia 343 (427)
T PRK02889 272 DGSGL---RRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAA-QRVTF---TGSYNTSPRISPDGK-LLA 343 (427)
T ss_pred CCCCc---EECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCce-EEEec---CCCCcCceEECCCCC-EEE
Confidence 44432 223223322 34889999999887664 4555555 4455543 22221 122334678999999 776
Q ss_pred EEeCCC---cEEEEEEcCCCcEEE
Q 003822 700 SGSCDE---HVVRICCAQTGRRLR 720 (793)
Q Consensus 700 Sgs~Dg---~II~IWDv~tg~~l~ 720 (793)
..+.++ .+ .+||+.+++...
T Consensus 344 ~~s~~~g~~~I-~v~d~~~g~~~~ 366 (427)
T PRK02889 344 YISRVGGAFKL-YVQDLATGQVTA 366 (427)
T ss_pred EEEccCCcEEE-EEEECCCCCeEE
Confidence 655544 57 999999887543
No 234
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.16 E-value=7.9e-11 Score=126.75 Aligned_cols=198 Identities=15% Similarity=0.193 Sum_probs=158.0
Q ss_pred CEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEEC
Q 003822 500 SVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDI 579 (793)
Q Consensus 500 ~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl 579 (793)
.-..+.|+ .+|..++.|+.-|.|-.+|..++... ..+.-...|.++.|- ....++++.....++|||-
T Consensus 131 GPY~~~yt-rnGrhlllgGrKGHlAa~Dw~t~~L~----------~Ei~v~Etv~Dv~~L-Hneq~~AVAQK~y~yvYD~ 198 (545)
T KOG1272|consen 131 GPYHLDYT-RNGRHLLLGGRKGHLAAFDWVTKKLH----------FEINVMETVRDVTFL-HNEQFFAVAQKKYVYVYDN 198 (545)
T ss_pred CCeeeeec-CCccEEEecCCccceeeeecccceee----------eeeehhhhhhhhhhh-cchHHHHhhhhceEEEecC
Confidence 35677886 78999999999999999999987652 122222457777774 4456666777889999996
Q ss_pred CCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEECCCCCccceEEccCCCCeE-EEEEecCCCEEEEEeCC
Q 003822 580 NSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLVSAVD 658 (793)
Q Consensus 580 ~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~~~~v-sv~fSpdg~~Lasgs~D 658 (793)
. |..++.++ ....|..+.|-|.. .+|++++..|.++--|+.+++.... +....+.+ .++-.|-...+-+|...
T Consensus 199 ~-GtElHClk--~~~~v~rLeFLPyH-fLL~~~~~~G~L~Y~DVS~GklVa~--~~t~~G~~~vm~qNP~NaVih~Ghsn 272 (545)
T KOG1272|consen 199 N-GTELHCLK--RHIRVARLEFLPYH-FLLVAASEAGFLKYQDVSTGKLVAS--IRTGAGRTDVMKQNPYNAVIHLGHSN 272 (545)
T ss_pred C-CcEEeehh--hcCchhhhcccchh-heeeecccCCceEEEeechhhhhHH--HHccCCccchhhcCCccceEEEcCCC
Confidence 6 77888887 34679999999998 8999999999999999999855433 33333444 37888988999999999
Q ss_pred CeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEE
Q 003822 659 NEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRLR 720 (793)
Q Consensus 659 g~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~ 720 (793)
|+|.+|......++..+. .|.+.+.++++.++|. |++|.|.|..+ +|||++.-..+.
T Consensus 273 GtVSlWSP~skePLvKiL---cH~g~V~siAv~~~G~-YMaTtG~Dr~~-kIWDlR~~~ql~ 329 (545)
T KOG1272|consen 273 GTVSLWSPNSKEPLVKIL---CHRGPVSSIAVDRGGR-YMATTGLDRKV-KIWDLRNFYQLH 329 (545)
T ss_pred ceEEecCCCCcchHHHHH---hcCCCcceEEECCCCc-EEeecccccce-eEeeeccccccc
Confidence 999999988887766554 4677899999999999 99999999999 999998877665
No 235
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.15 E-value=3.3e-07 Score=101.51 Aligned_cols=283 Identities=16% Similarity=0.176 Sum_probs=174.5
Q ss_pred EEEEeCC----CeEEEEEC--CCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEc----CCcEEEEEcCCCCCccccc
Q 003822 469 MVFGTLD----GEIVVVNH--ENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSD----NGSLKLYDIRHMPPSIRGM 538 (793)
Q Consensus 469 Lasgs~D----G~I~VWd~--~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~----DgtV~vWDl~~~~~~~~~~ 538 (793)
++.|+.. +.|.+|.+ ++++....-.. .......-++++ +++++|+++.. +|.|..|++......+..+
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~-~~~~~Ps~l~~~-~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~ 79 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTV-AEGENPSWLAVS-PDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLL 79 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEE-EESSSECCEEE--TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeee-cCCCCCceEEEE-eCCCEEEEEEccccCCCCEEEEEECCCcceeEEe
Confidence 4556655 68998887 55554322211 223345567776 68888888876 5789999988753222111
Q ss_pred ccCCceeEecCCCCeEEEEEccCCCEEEEEEC-CCcEEEEECCC-CcEEEE---Ecc---------cCCCCeEEEEEcCC
Q 003822 539 HYGAGTVTFDEFDQLTSVHVNSMDELFLASGY-SKNIALYDINS-GRRLQV---FAD---------MHKEHINVVKFSNH 604 (793)
Q Consensus 539 ~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~-Dg~I~IWDl~t-g~~l~~---~~~---------gh~~~V~sv~fspd 604 (793)
. ... ........+++++++..++++.. +|.|.++++.. |..... +.. .......++.|+|+
T Consensus 80 ~----~~~-~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pd 154 (345)
T PF10282_consen 80 N----SVP-SGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPD 154 (345)
T ss_dssp E----EEE-ESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TT
T ss_pred e----eec-cCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCC
Confidence 1 111 12345678899999999999985 89999999987 443322 210 12345789999999
Q ss_pred CCcEEEEE-eCCCeEEEEECCCCC--cc--ceEEccCCCCeEEEEEecCCCEEEEEe-CCCeEEEEEcC--CCcE--EEE
Q 003822 605 SPSIFATS-SFDQDVKLWDLRQKP--IQ--PCYTASSSKGNVMVCFSPDDHYLLVSA-VDNEVRQLLAV--DGRV--HLN 674 (793)
Q Consensus 605 g~~~LaTg-s~Dg~IrIWDlrt~~--~~--~~~~l~~~~~~vsv~fSpdg~~Lasgs-~Dg~I~IwDl~--tg~~--~~~ 674 (793)
+ +++++. -....|.+|++.... .. .....+...++..+.|+|+|+++++.. .++.|.+|++. ++.. +..
T Consensus 155 g-~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~ 233 (345)
T PF10282_consen 155 G-RFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQT 233 (345)
T ss_dssp S-SEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEE
T ss_pred C-CEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEE
Confidence 9 555544 345579999997754 22 233556667888899999999998776 47889999988 5543 222
Q ss_pred Eeeec---CCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEc--CCCcEEEeeeecCCCCCccceeeeccCCccccCCcc
Q 003822 675 FGITA---TGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCA--QTGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMS 749 (793)
Q Consensus 675 l~~~~---~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv--~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~ 749 (793)
+...+ .+......++++|||+.+.++....+.| .+|++ .+|++.. +..+... -..
T Consensus 234 ~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI-~vf~~d~~~g~l~~--------------~~~~~~~-----G~~ 293 (345)
T PF10282_consen 234 ISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSI-SVFDLDPATGTLTL--------------VQTVPTG-----GKF 293 (345)
T ss_dssp EESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEE-EEEEECTTTTTEEE--------------EEEEEES-----SSS
T ss_pred eeeccccccccCCceeEEEecCCCEEEEEeccCCEE-EEEEEecCCCceEE--------------EEEEeCC-----CCC
Confidence 22211 1222567889999999444444455667 99998 3344322 1111100 013
Q ss_pred EEEEEEcCCCCceeeEeeEEEeCCCcEEEEcCCC
Q 003822 750 ILAAYTRPSSKSEIVKVNLLASTDHCDKECSHGQ 783 (793)
Q Consensus 750 V~sva~~P~~~~~iv~~~ltaS~Dg~VkvW~~~~ 783 (793)
...++++|+++..++ ..-.++.|.+|+.+.
T Consensus 294 Pr~~~~s~~g~~l~V----a~~~s~~v~vf~~d~ 323 (345)
T PF10282_consen 294 PRHFAFSPDGRYLYV----ANQDSNTVSVFDIDP 323 (345)
T ss_dssp EEEEEE-TTSSEEEE----EETTTTEEEEEEEET
T ss_pred ccEEEEeCCCCEEEE----EecCCCeEEEEEEeC
Confidence 688999998765555 556788899988754
No 236
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.15 E-value=1.5e-09 Score=112.53 Aligned_cols=216 Identities=13% Similarity=0.139 Sum_probs=154.1
Q ss_pred CCeEEEEEccCCCEEEEEECCCcEEEEECCCCc---EEEEEcccCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEC-CCC
Q 003822 551 DQLTSVHVNSMDELFLASGYSKNIALYDINSGR---RLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDL-RQK 626 (793)
Q Consensus 551 ~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~---~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~Dg~IrIWDl-rt~ 626 (793)
.+|+|.+|+++...++++.....|.||.....+ ..+++. .|...|++|.|+|.. +.|++|+.|..-++|.. ..+
T Consensus 11 ~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls-~Hd~~vtgvdWap~s-nrIvtcs~drnayVw~~~~~~ 88 (361)
T KOG1523|consen 11 EPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLS-EHDKIVTGVDWAPKS-NRIVTCSHDRNAYVWTQPSGG 88 (361)
T ss_pred CceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehh-hhCcceeEEeecCCC-CceeEccCCCCccccccCCCC
Confidence 679999999988888888889999999988654 677888 599999999999999 79999999999999998 445
Q ss_pred CccceEEccCC-CCeEEEEEecCCCEEEEEeCCCeEEEEEcCCCcEEE-EEeeecCCCCCcEEEEEeeCCCeEEEEEeCC
Q 003822 627 PIQPCYTASSS-KGNVMVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHL-NFGITATGSSQNYTRSYYLNGRDYIVSGSCD 704 (793)
Q Consensus 627 ~~~~~~~l~~~-~~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~-~l~~~~~~~~~v~s~afspdg~~~L~Sgs~D 704 (793)
+..+...+-.+ ....++.|+|.++.+|+|+....|.||-.....--- .-.+.....+.+.++.|+|++- ++++||.|
T Consensus 89 ~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnV-LlaaGs~D 167 (361)
T KOG1523|consen 89 TWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNV-LLAAGSTD 167 (361)
T ss_pred eeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcc-eecccccC
Confidence 55555544433 345569999999999999999999999876543210 0011224567789999999998 99999999
Q ss_pred CcEEEEEEcCCCcEEEeeeecCCCCCc--cceeeeccCC----ccccCCccEEEEEEcCCCCceeeEeeEEEeCCCcEEE
Q 003822 705 EHVVRICCAQTGRRLRDISLEGKGSGT--SMFVQSLRGD----PFRDFNMSILAAYTRPSSKSEIVKVNLLASTDHCDKE 778 (793)
Q Consensus 705 g~II~IWDv~tg~~l~~~~L~gh~~~~--s~~v~sl~g~----~~~~h~~~V~sva~~P~~~~~iv~~~ltaS~Dg~Vkv 778 (793)
+.. ||+..- +++-+..+ .-|-+.++.. .+..--+.|.++.|+|. .+.+. -.+.|++|.+
T Consensus 168 ~k~-rVfSay---------IK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~s-G~~la----wv~Hds~v~~ 232 (361)
T KOG1523|consen 168 GKC-RVFSAY---------IKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPS-GNRLA----WVGHDSTVSF 232 (361)
T ss_pred cce-eEEEEe---------eeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCC-CCEee----EecCCCceEE
Confidence 999 999752 22211111 0011111111 11122347999999995 44444 4577888777
Q ss_pred EcCCCC
Q 003822 779 CSHGQH 784 (793)
Q Consensus 779 W~~~~~ 784 (793)
=+...+
T Consensus 233 ~da~~p 238 (361)
T KOG1523|consen 233 VDAAGP 238 (361)
T ss_pred eecCCC
Confidence 665444
No 237
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.11 E-value=3e-08 Score=112.40 Aligned_cols=220 Identities=14% Similarity=0.098 Sum_probs=139.0
Q ss_pred CCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcC---CcEEEEEcCCCCCcccccccCCceeEecCCC
Q 003822 475 DGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDN---GSLKLYDIRHMPPSIRGMHYGAGTVTFDEFD 551 (793)
Q Consensus 475 DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~D---gtV~vWDl~~~~~~~~~~~~~~~~~~~~~~~ 551 (793)
...|.++|...+.. ..+. .+...+...+|+ ++|++|+.++.+ ..|.+||+.+++.... .....
T Consensus 169 ~~~l~~~d~~g~~~-~~l~--~~~~~~~~p~~S-pdg~~la~~~~~~~~~~i~v~d~~~g~~~~~----------~~~~~ 234 (417)
T TIGR02800 169 RYELQVADYDGANP-QTIT--RSREPILSPAWS-PDGQKLAYVSFESGKPEIYVQDLATGQREKV----------ASFPG 234 (417)
T ss_pred cceEEEEcCCCCCC-EEee--cCCCceecccCC-CCCCEEEEEEcCCCCcEEEEEECCCCCEEEe----------ecCCC
Confidence 34688888764443 3333 455678899998 789988877644 4799999987643111 11223
Q ss_pred CeEEEEEccCCCEEEEEE-CC--CcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEe-CCC--eEEEEECCC
Q 003822 552 QLTSVHVNSMDELFLASG-YS--KNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSS-FDQ--DVKLWDLRQ 625 (793)
Q Consensus 552 ~V~sv~~s~~~~~lla~g-~D--g~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs-~Dg--~IrIWDlrt 625 (793)
.+.++.|+|++..++.+. .+ ..|++||+.+++... +. .+........|+|+| ..|+..+ .++ .|.+||+.+
T Consensus 235 ~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~-l~-~~~~~~~~~~~s~dg-~~l~~~s~~~g~~~iy~~d~~~ 311 (417)
T TIGR02800 235 MNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTR-LT-NGPGIDTEPSWSPDG-KSIAFTSDRGGSPQIYMMDADG 311 (417)
T ss_pred CccceEECCCCCEEEEEECCCCCccEEEEECCCCCEEE-CC-CCCCCCCCEEECCCC-CEEEEEECCCCCceEEEEECCC
Confidence 456688999988887654 33 469999998876543 33 254555677899999 5555444 343 588888877
Q ss_pred CCccceEEccCCCCeEEEEEecCCCEEEEEeCCC---eEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCCCeEEEEEe
Q 003822 626 KPIQPCYTASSSKGNVMVCFSPDDHYLLVSAVDN---EVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNGRDYIVSGS 702 (793)
Q Consensus 626 ~~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs~Dg---~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs 702 (793)
++...+ .. .........|+|+|++++.++.++ .|.+||+.++... .+. .........|+|+|+ +|+.++
T Consensus 312 ~~~~~l-~~-~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~----~~~~~~~p~~spdg~-~l~~~~ 383 (417)
T TIGR02800 312 GEVRRL-TF-RGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLT----DTGLDESPSFAPNGR-MILYAT 383 (417)
T ss_pred CCEEEe-ec-CCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE-Ecc----CCCCCCCceECCCCC-EEEEEE
Confidence 643322 21 222334589999999999988776 8899999886542 222 111234568999999 555554
Q ss_pred CCC-c-EEEEEEcCCCcEEE
Q 003822 703 CDE-H-VVRICCAQTGRRLR 720 (793)
Q Consensus 703 ~Dg-~-II~IWDv~tg~~l~ 720 (793)
.++ . .+++.+. +|+...
T Consensus 384 ~~~~~~~l~~~~~-~g~~~~ 402 (417)
T TIGR02800 384 TRGGRGVLGLVST-DGRFRA 402 (417)
T ss_pred eCCCcEEEEEEEC-CCceee
Confidence 443 2 2245443 344444
No 238
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.11 E-value=2.5e-08 Score=114.26 Aligned_cols=220 Identities=13% Similarity=0.067 Sum_probs=135.1
Q ss_pred eEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEc-CC--cEEEEEcCCCCCcccccccCCceeEecCCCCe
Q 003822 477 EIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSD-NG--SLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQL 553 (793)
Q Consensus 477 ~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~-Dg--tV~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V 553 (793)
.|.++|....... .+. .+...+.+..|+ ++|+.|+..+. ++ .|.+||+.+++..... ......
T Consensus 199 ~l~i~d~dG~~~~-~l~--~~~~~~~~p~wS-PDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt----------~~~g~~ 264 (448)
T PRK04792 199 QLMIADYDGYNEQ-MLL--RSPEPLMSPAWS-PDGRKLAYVSFENRKAEIFVQDIYTQVREKVT----------SFPGIN 264 (448)
T ss_pred EEEEEeCCCCCce-Eee--cCCCcccCceEC-CCCCEEEEEEecCCCcEEEEEECCCCCeEEec----------CCCCCc
Confidence 6777787654433 332 456688899998 78888877654 33 5888898876531110 001223
Q ss_pred EEEEEccCCCEEEEEE-CCC--cEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeCCC--eEEEEECCCCCc
Q 003822 554 TSVHVNSMDELFLASG-YSK--NIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQ--DVKLWDLRQKPI 628 (793)
Q Consensus 554 ~sv~~s~~~~~lla~g-~Dg--~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~Dg--~IrIWDlrt~~~ 628 (793)
....|+|++..++.+. .+| .|++||+.+++... +. .+........|+|+|..+++++..++ .|.++|+.+++.
T Consensus 265 ~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~-lt-~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~ 342 (448)
T PRK04792 265 GAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALTR-IT-RHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKV 342 (448)
T ss_pred CCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEE-Cc-cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence 4678999999887654 455 48888998776543 44 25556678899999944444444444 466678877654
Q ss_pred cceEEccCCCCeEEEEEecCCCEEEEEeCC-C--eEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCCCeEEEEEeCCC
Q 003822 629 QPCYTASSSKGNVMVCFSPDDHYLLVSAVD-N--EVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNGRDYIVSGSCDE 705 (793)
Q Consensus 629 ~~~~~l~~~~~~vsv~fSpdg~~Lasgs~D-g--~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg 705 (793)
..+ +..+. .....+|+|||++|+..+.+ + .|.++|+.+++.. .+. . . .......|+|+|+.++++...+|
T Consensus 343 ~~L-t~~g~-~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt--~-~-~~d~~ps~spdG~~I~~~~~~~g 415 (448)
T PRK04792 343 SRL-TFEGE-QNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLT--S-T-RLDESPSVAPNGTMVIYSTTYQG 415 (448)
T ss_pred EEE-ecCCC-CCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE-Ecc--C-C-CCCCCceECCCCCEEEEEEecCC
Confidence 332 22222 22347899999999887653 3 4666788887652 222 1 1 12234579999995555555555
Q ss_pred cE-EEEEEcCCCcEEE
Q 003822 706 HV-VRICCAQTGRRLR 720 (793)
Q Consensus 706 ~I-I~IWDv~tg~~l~ 720 (793)
.- +++++. +|+...
T Consensus 416 ~~~l~~~~~-~G~~~~ 430 (448)
T PRK04792 416 KQVLAAVSI-DGRFKA 430 (448)
T ss_pred ceEEEEEEC-CCCceE
Confidence 42 266776 455555
No 239
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.10 E-value=4.4e-10 Score=136.34 Aligned_cols=192 Identities=15% Similarity=0.253 Sum_probs=149.1
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcc
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSI 535 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~ 535 (793)
|.++.=|| ...+.+||+.||.|++|....++.+..++..|. ..|+.+.|+ ..|+.+..+..||.+.+|.+.... .
T Consensus 2211 v~r~~sHp-~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~-s~vtr~~f~-~qGnk~~i~d~dg~l~l~q~~pk~--~ 2285 (2439)
T KOG1064|consen 2211 VRRMTSHP-SDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGN-SRVTRSRFN-HQGNKFGIVDGDGDLSLWQASPKP--Y 2285 (2439)
T ss_pred eeeecCCC-CCceEEecCCCceEEEEeccCCCeEEEeeccCc-chhhhhhhc-ccCCceeeeccCCceeecccCCcc--e
Confidence 77888899 667899999999999999999998888887565 899999997 789999999999999999987311 1
Q ss_pred cccccCCceeEecCCCCeEEEEEccCCCEEEEEE---CCCcEEEEECCCC---cEEEEEcccCCCCeEEEEEcCCCCcEE
Q 003822 536 RGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASG---YSKNIALYDINSG---RRLQVFADMHKEHINVVKFSNHSPSIF 609 (793)
Q Consensus 536 ~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g---~Dg~I~IWDl~tg---~~l~~~~~gh~~~V~sv~fspdg~~~L 609 (793)
... ..|......+.|-. ..++++| .++.+.+||..-. ..+. . .|.+.++++++.|.. ++|
T Consensus 2286 ~s~--------qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~-~H~~gaT~l~~~P~~-qll 2351 (2439)
T KOG1064|consen 2286 TSW--------QCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--T-CHDGGATVLAYAPKH-QLL 2351 (2439)
T ss_pred ecc--------ccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee--e-ecCCCceEEEEcCcc-eEE
Confidence 111 12334456666633 5555555 3689999997642 2333 3 799999999999998 899
Q ss_pred EEEeCCCeEEEEECCCCCccceEEccCCCCeEEEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEee
Q 003822 610 ATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGI 677 (793)
Q Consensus 610 aTgs~Dg~IrIWDlrt~~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~ 677 (793)
++|+.+|.|++||++..+.... ++. +. ...++++|+..|.++||++..-..+.++..
T Consensus 2352 isggr~G~v~l~D~rqrql~h~--~~~--------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2352 ISGGRKGEVCLFDIRQRQLRHT--FQA--------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred EecCCcCcEEEeehHHHHHHHH--hhh--------hh-hhheeeccCcccceEEEEccccchhhcCch
Confidence 9999999999999998744322 221 44 567899999999999999998877777654
No 240
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.06 E-value=4.7e-08 Score=111.50 Aligned_cols=215 Identities=11% Similarity=0.008 Sum_probs=135.4
Q ss_pred eEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcC---CcEEEEEcCCCCCcccccccCCceeEecCCCCe
Q 003822 477 EIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDN---GSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQL 553 (793)
Q Consensus 477 ~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~D---gtV~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V 553 (793)
.|.++|.+.+... .+. .+...+....|+ ++|+.|+..+.+ ..|.+||+.+++.... . ...+.+
T Consensus 180 ~l~~~d~~g~~~~-~l~--~~~~~~~~p~wS-pDG~~la~~s~~~~~~~l~~~~l~~g~~~~l--~--------~~~g~~ 245 (430)
T PRK00178 180 TLQRSDYDGARAV-TLL--QSREPILSPRWS-PDGKRIAYVSFEQKRPRIFVQNLDTGRREQI--T--------NFEGLN 245 (430)
T ss_pred EEEEECCCCCCce-EEe--cCCCceeeeeEC-CCCCEEEEEEcCCCCCEEEEEECCCCCEEEc--c--------CCCCCc
Confidence 4778887755443 333 456788999998 788888776543 3688899987654211 1 011234
Q ss_pred EEEEEccCCCEEEEEE-CCC--cEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeCCC--eEEEEECCCCCc
Q 003822 554 TSVHVNSMDELFLASG-YSK--NIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQ--DVKLWDLRQKPI 628 (793)
Q Consensus 554 ~sv~~s~~~~~lla~g-~Dg--~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~Dg--~IrIWDlrt~~~ 628 (793)
....|+|++..++.+. .+| .|++||+.+++... +. .+........|+|+|..+++++..+| .|.++|+.+++.
T Consensus 246 ~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~-lt-~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~ 323 (430)
T PRK00178 246 GAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSR-VT-NHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRA 323 (430)
T ss_pred CCeEECCCCCEEEEEEccCCCceEEEEECCCCCeEE-cc-cCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence 4678999998887654 344 68899999876543 44 25555667899999944444444444 477778877654
Q ss_pred cceEEccCCCCeEEEEEecCCCEEEEEeCC-C--eEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCCCeEEEEEeCCC
Q 003822 629 QPCYTASSSKGNVMVCFSPDDHYLLVSAVD-N--EVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNGRDYIVSGSCDE 705 (793)
Q Consensus 629 ~~~~~l~~~~~~vsv~fSpdg~~Lasgs~D-g--~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg 705 (793)
..+ ...+ .......|+|+|++|+..+.+ + .|.+||+.+++. ..+. .. .......|+|+|+.++++...+|
T Consensus 324 ~~l-t~~~-~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~-~~lt--~~--~~~~~p~~spdg~~i~~~~~~~g 396 (430)
T PRK00178 324 ERV-TFVG-NYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSV-RILT--DT--SLDESPSVAPNGTMLIYATRQQG 396 (430)
T ss_pred EEe-ecCC-CCccceEECCCCCEEEEEEccCCceEEEEEECCCCCE-EEcc--CC--CCCCCceECCCCCEEEEEEecCC
Confidence 332 2222 122247899999999887653 2 588899988865 3332 11 12234589999995555554444
Q ss_pred cE-EEEEEcC
Q 003822 706 HV-VRICCAQ 714 (793)
Q Consensus 706 ~I-I~IWDv~ 714 (793)
.- |.++++.
T Consensus 397 ~~~l~~~~~~ 406 (430)
T PRK00178 397 RGVLMLVSIN 406 (430)
T ss_pred ceEEEEEECC
Confidence 33 2566664
No 241
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.06 E-value=1.2e-08 Score=104.89 Aligned_cols=230 Identities=15% Similarity=0.201 Sum_probs=152.2
Q ss_pred CCeEEEEECCCCeEEE--EEeccCCCCCEEEEEEee--CCCC-EEEEEEcCCcEEEEEcCCCCC--cccccccCCceeEe
Q 003822 475 DGEIVVVNHENENIVS--YIPSFGAMNSVLGLCWLK--KYPS-KLIAGSDNGSLKLYDIRHMPP--SIRGMHYGAGTVTF 547 (793)
Q Consensus 475 DG~I~VWd~~t~~~i~--~l~~~~h~~~V~sv~fs~--~~g~-~Lasgs~DgtV~vWDl~~~~~--~~~~~~~~~~~~~~ 547 (793)
.|.+.+|++...+... .+.- ..+..+..+.|.- .+|. .++-+..+|.|.++....... .++.+....-..
T Consensus 45 ~Gkl~Lys~~d~~~~~l~~~q~-~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~-- 121 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLSPLDTLQC-TDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISV-- 121 (339)
T ss_pred ccceEEEeecccccCccceeee-ecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhh--
Confidence 4678888887655433 2222 2345677788852 3455 566677889999998765332 111111111000
Q ss_pred cCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEE--EEEcccCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEECCC
Q 003822 548 DEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRL--QVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQ 625 (793)
Q Consensus 548 ~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l--~~~~~gh~~~V~sv~fspdg~~~LaTgs~Dg~IrIWDlrt 625 (793)
....++.|.+.+..++++-.+|.+.+-+....... +.++ +|.-+++...|+...|+++.+|+.|+.+..||+|.
T Consensus 122 ---~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk-~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~ 197 (339)
T KOG0280|consen 122 ---VEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWK-VHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRI 197 (339)
T ss_pred ---eeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeeccccc-ccceeeeeeecccCCCceEEecCCCceEEEEEecC
Confidence 12467788777888887778899986666555443 3677 79999999999999999999999999999999995
Q ss_pred CCccceEE--ccCCCCeEEEEEec-CCCEEEEEeCCCeEEEEEcCC-CcEEEEEeeecCCCCCcEEEEEeeCCCeEEEEE
Q 003822 626 KPIQPCYT--ASSSKGNVMVCFSP-DDHYLLVSAVDNEVRQLLAVD-GRVHLNFGITATGSSQNYTRSYYLNGRDYIVSG 701 (793)
Q Consensus 626 ~~~~~~~~--l~~~~~~vsv~fSp-dg~~Lasgs~Dg~I~IwDl~t-g~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sg 701 (793)
.+ ..++. ..++.+++++.-+| .+.+|++|+.|..|++||.++ ++++..- .....|+.+.++|.....++.+
T Consensus 198 p~-~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~----~v~GGVWRi~~~p~~~~~lL~~ 272 (339)
T KOG0280|consen 198 PK-TFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKA----KVGGGVWRIKHHPEIFHRLLAA 272 (339)
T ss_pred Cc-ceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccC----ccccceEEEEecchhhhHHHHH
Confidence 43 22222 22445677766665 688999999999999999984 5554433 2346799999998654333333
Q ss_pred eCCCcEEEEEEcCCCc
Q 003822 702 SCDEHVVRICCAQTGR 717 (793)
Q Consensus 702 s~Dg~II~IWDv~tg~ 717 (793)
..-.-. +|-+...+.
T Consensus 273 CMh~G~-ki~~~~~~~ 287 (339)
T KOG0280|consen 273 CMHNGA-KILDSSDKV 287 (339)
T ss_pred HHhcCc-eEEEecccc
Confidence 333334 566665543
No 242
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.06 E-value=1.4e-07 Score=118.10 Aligned_cols=257 Identities=17% Similarity=0.173 Sum_probs=164.7
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCC------------CCCEEEEEEeeCCCCEEEEEE-cCCc
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGA------------MNSVLGLCWLKKYPSKLIAGS-DNGS 522 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h------------~~~V~sv~fs~~~g~~Lasgs-~Dgt 522 (793)
+..+++++.++.++++-+.++.|++||.. +..+..+...+. -.....+++. ++++.|+++. ..+.
T Consensus 570 P~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd-~~gn~LYVaDt~n~~ 647 (1057)
T PLN02919 570 PGKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYN-AKKNLLYVADTENHA 647 (1057)
T ss_pred CceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEe-CCCCEEEEEeCCCce
Confidence 56789998667788888889999999986 444443322111 1235778886 5666655554 4578
Q ss_pred EEEEEcCCCCCcccccccCCc------e-eEecCCCCeEEEEEccCCCEEEEE-ECCCcEEEEECCCCcEEEEEcc----
Q 003822 523 LKLYDIRHMPPSIRGMHYGAG------T-VTFDEFDQLTSVHVNSMDELFLAS-GYSKNIALYDINSGRRLQVFAD---- 590 (793)
Q Consensus 523 V~vWDl~~~~~~~~~~~~~~~------~-~~~~~~~~V~sv~~s~~~~~lla~-g~Dg~I~IWDl~tg~~l~~~~~---- 590 (793)
|+++|..++......-.+... . -..........++++|.++.++++ +.++.|++||..++... .+.+
T Consensus 648 Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~ 726 (1057)
T PLN02919 648 LREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYE 726 (1057)
T ss_pred EEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCcc
Confidence 999998775431110000000 0 000001335689998866655555 46899999999877543 2210
Q ss_pred ----c------CCCCeEEEEEcCCCCcEEEEEeCCCeEEEEECCCCCccceE-----------EccC---------CCCe
Q 003822 591 ----M------HKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCY-----------TASS---------SKGN 640 (793)
Q Consensus 591 ----g------h~~~V~sv~fspdg~~~LaTgs~Dg~IrIWDlrt~~~~~~~-----------~l~~---------~~~~ 640 (793)
+ .-...+.++++|++..++++-+.++.|++||+.++...... .+.. ...+
T Consensus 727 ~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P 806 (1057)
T PLN02919 727 RNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHP 806 (1057)
T ss_pred ccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCC
Confidence 0 11245679999998557777777899999999875422111 0000 0123
Q ss_pred EEEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeec-----------CCCCCcEEEEEeeCCCeEEEEEeCCCcEEE
Q 003822 641 VMVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITA-----------TGSSQNYTRSYYLNGRDYIVSGSCDEHVVR 709 (793)
Q Consensus 641 vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~-----------~~~~~v~s~afspdg~~~L~Sgs~Dg~II~ 709 (793)
..++++++|..+++-+.++.|++||..++.... +.... ..-.....++++++|+ ++++-+.+++| +
T Consensus 807 ~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~t-iaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~-lyVaDt~Nn~I-r 883 (1057)
T PLN02919 807 LGVLCAKDGQIYVADSYNHKIKKLDPATKRVTT-LAGTGKAGFKDGKALKAQLSEPAGLALGENGR-LFVADTNNSLI-R 883 (1057)
T ss_pred ceeeEeCCCcEEEEECCCCEEEEEECCCCeEEE-EeccCCcCCCCCcccccccCCceEEEEeCCCC-EEEEECCCCEE-E
Confidence 468999999988888889999999998876543 22111 0112466789999998 77788888888 9
Q ss_pred EEEcCCCcE
Q 003822 710 ICCAQTGRR 718 (793)
Q Consensus 710 IWDv~tg~~ 718 (793)
+||+.+++.
T Consensus 884 vid~~~~~~ 892 (1057)
T PLN02919 884 YLDLNKGEA 892 (1057)
T ss_pred EEECCCCcc
Confidence 999999875
No 243
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.06 E-value=6.5e-08 Score=109.62 Aligned_cols=176 Identities=16% Similarity=0.198 Sum_probs=117.3
Q ss_pred cEEEEEcCCCCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEECC---CcEEEEECCCCcEEEEEcccCCCCeEE
Q 003822 522 SLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYS---KNIALYDINSGRRLQVFADMHKEHINV 598 (793)
Q Consensus 522 tV~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~D---g~I~IWDl~tg~~l~~~~~gh~~~V~s 598 (793)
.|.++|...... .....+...+.+..|+|++..++.+..+ ..|++||+.+++...... +.+.+.+
T Consensus 171 ~l~~~d~~g~~~----------~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~--~~~~~~~ 238 (417)
T TIGR02800 171 ELQVADYDGANP----------QTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVAS--FPGMNGA 238 (417)
T ss_pred eEEEEcCCCCCC----------EEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeec--CCCCccc
Confidence 577777754332 1112233457788899999998887643 579999999886544332 5566778
Q ss_pred EEEcCCCCcEEEEEeCCC--eEEEEECCCCCccceEEccCCCCe-EEEEEecCCCEEEEEeCC-C--eEEEEEcCCCcEE
Q 003822 599 VKFSNHSPSIFATSSFDQ--DVKLWDLRQKPIQPCYTASSSKGN-VMVCFSPDDHYLLVSAVD-N--EVRQLLAVDGRVH 672 (793)
Q Consensus 599 v~fspdg~~~LaTgs~Dg--~IrIWDlrt~~~~~~~~l~~~~~~-vsv~fSpdg~~Lasgs~D-g--~I~IwDl~tg~~~ 672 (793)
++|+|+|..++++.+.++ .|.+||+.++....+ ..+... ....|+|||++|+..+.. + .|+++|+.+++..
T Consensus 239 ~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l---~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~ 315 (417)
T TIGR02800 239 PAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRL---TNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR 315 (417)
T ss_pred eEECCCCCEEEEEECCCCCccEEEEECCCCCEEEC---CCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE
Confidence 999999944555555554 488899987643322 222222 347899999998876643 3 6888898877643
Q ss_pred EEEeeecCCCCCcEEEEEeeCCCeEEEEEeCCC---cEEEEEEcCCCcE
Q 003822 673 LNFGITATGSSQNYTRSYYLNGRDYIVSGSCDE---HVVRICCAQTGRR 718 (793)
Q Consensus 673 ~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg---~II~IWDv~tg~~ 718 (793)
.+. .+........|+|+|+ +|+.++.++ .| .+||+.++..
T Consensus 316 -~l~---~~~~~~~~~~~spdg~-~i~~~~~~~~~~~i-~~~d~~~~~~ 358 (417)
T TIGR02800 316 -RLT---FRGGYNASPSWSPDGD-LIAFVHREGGGFNI-AVMDLDGGGE 358 (417)
T ss_pred -Eee---cCCCCccCeEECCCCC-EEEEEEccCCceEE-EEEeCCCCCe
Confidence 332 1334556788999998 676666665 66 8889887654
No 244
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.02 E-value=3.5e-08 Score=109.87 Aligned_cols=210 Identities=16% Similarity=0.221 Sum_probs=146.0
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEEEeccC-CCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcccccccCCc
Q 003822 465 ISCLMVFGTLDGEIVVVNHENENIVSYIPSFG-AMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAG 543 (793)
Q Consensus 465 d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~-h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~~~~~~~~~ 543 (793)
...++|....||.++||+..+++....+.... -.+..++..|. |..... -.+ .....
T Consensus 4 ~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~------L~~~~s--~~k----------~~~~~---- 61 (541)
T KOG4547|consen 4 ALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWG------LSADYS--PMK----------WLSLE---- 61 (541)
T ss_pred hhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEE------EEeccc--hHH----------HHhHH----
Confidence 56789999999999999999988776654222 12334444442 111110 000 00000
Q ss_pred eeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEc-ccCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEE
Q 003822 544 TVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFA-DMHKEHINVVKFSNHSPSIFATSSFDQDVKLWD 622 (793)
Q Consensus 544 ~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~-~gh~~~V~sv~fspdg~~~LaTgs~Dg~IrIWD 622 (793)
.+... +.+...++-|...|.|.+|++..|+.-..+. +.|.+.|+++.++.+- ..|.+++.|+.+..|+
T Consensus 62 --------~~~~~--s~~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~-~ciyS~~ad~~v~~~~ 130 (541)
T KOG4547|consen 62 --------KAKKA--SLDTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRL-GCIYSVGADLKVVYIL 130 (541)
T ss_pred --------HHhhc--cCCceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeeccccc-CceEecCCceeEEEEe
Confidence 00000 0123344455578999999999999988887 5799999999999887 7999999999999999
Q ss_pred CCCCCccceEEccCCCC-eEEEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeC-----CCe
Q 003822 623 LRQKPIQPCYTASSSKG-NVMVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLN-----GRD 696 (793)
Q Consensus 623 lrt~~~~~~~~l~~~~~-~vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspd-----g~~ 696 (793)
.......+++. .... +.+++.+|||..+++|+ +.|++||+.+++.+.+|. +|.+.+.+++|-.+ |.
T Consensus 131 ~~~~~~~~~~~--~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ft---gh~s~v~t~~f~~~~~g~~G~- 202 (541)
T KOG4547|consen 131 EKEKVIIRIWK--EQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFT---GHGSPVRTLSFTTLIDGIIGK- 202 (541)
T ss_pred cccceeeeeec--cCCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEec---CCCcceEEEEEEEeccccccc-
Confidence 98875444443 3333 33699999999999998 689999999999999996 46667888888776 66
Q ss_pred EEEEEeCCCcEEEEEEcCC
Q 003822 697 YIVSGSCDEHVVRICCAQT 715 (793)
Q Consensus 697 ~L~Sgs~Dg~II~IWDv~t 715 (793)
+++++..-.+.|.+|-+..
T Consensus 203 ~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 203 YVLSSAAAERGITVWVVEK 221 (541)
T ss_pred eeeeccccccceeEEEEEc
Confidence 5555544444448886654
No 245
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.01 E-value=2.5e-07 Score=105.44 Aligned_cols=223 Identities=12% Similarity=0.144 Sum_probs=130.9
Q ss_pred CeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCE---EEEEEcCC--cEEEEEcCCCCCcccccccCCceeEecCC
Q 003822 476 GEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSK---LIAGSDNG--SLKLYDIRHMPPSIRGMHYGAGTVTFDEF 550 (793)
Q Consensus 476 G~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~---Lasgs~Dg--tV~vWDl~~~~~~~~~~~~~~~~~~~~~~ 550 (793)
+.|.+.|.+.+.... +. .....+.+-.|+ |+|+. +++...+| .|.+.++.+++..... ...
T Consensus 165 ~~l~~~d~dG~~~~~-lt--~~~~~~~sP~wS-PDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt----------~~~ 230 (428)
T PRK01029 165 GELWSVDYDGQNLRP-LT--QEHSLSITPTWM-HIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKIL----------ALQ 230 (428)
T ss_pred ceEEEEcCCCCCceE-cc--cCCCCcccceEc-cCCCceEEEEEEccCCCceEEEEECCCCCceEee----------cCC
Confidence 467777776554433 33 334556778998 67764 23444444 4666777766542111 111
Q ss_pred CCeEEEEEccCCCEEEEEEC-CC----cEEEEECCCC---cEEEEEcccCCCCeEEEEEcCCCCcEEE-EEeCCCeEEEE
Q 003822 551 DQLTSVHVNSMDELFLASGY-SK----NIALYDINSG---RRLQVFADMHKEHINVVKFSNHSPSIFA-TSSFDQDVKLW 621 (793)
Q Consensus 551 ~~V~sv~~s~~~~~lla~g~-Dg----~I~IWDl~tg---~~l~~~~~gh~~~V~sv~fspdg~~~La-Tgs~Dg~IrIW 621 (793)
.......|+|++..++..+. +| .+.+|++..+ +...... ++.+.....+|+|+| +.|+ ++..+|...+|
T Consensus 231 g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~-~~~~~~~~p~wSPDG-~~Laf~s~~~g~~~ly 308 (428)
T PRK01029 231 GNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLN-EAFGTQGNPSFSPDG-TRLVFVSNKDGRPRIY 308 (428)
T ss_pred CCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeec-CCCCCcCCeEECCCC-CEEEEEECCCCCceEE
Confidence 23345789999988887763 22 3444777653 3333332 233445678999999 5555 44456765555
Q ss_pred --ECCCCCccceEEccCC-CCeEEEEEecCCCEEEEEeCC---CeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCCC
Q 003822 622 --DLRQKPIQPCYTASSS-KGNVMVCFSPDDHYLLVSAVD---NEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNGR 695 (793)
Q Consensus 622 --Dlrt~~~~~~~~l~~~-~~~vsv~fSpdg~~Lasgs~D---g~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg~ 695 (793)
++....... ..+... .......|||||++|+..+.+ ..|.+||+.+++... +. .+...+....|+|||+
T Consensus 309 ~~~~~~~g~~~-~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~-Lt---~~~~~~~~p~wSpDG~ 383 (428)
T PRK01029 309 IMQIDPEGQSP-RLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQ-LT---TSPENKESPSWAIDSL 383 (428)
T ss_pred EEECcccccce-EEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEE-cc---CCCCCccceEECCCCC
Confidence 443211111 112222 233458999999999877643 479999999887633 32 1223456789999999
Q ss_pred eEEEEEeCC--CcEEEEEEcCCCcEEE
Q 003822 696 DYIVSGSCD--EHVVRICCAQTGRRLR 720 (793)
Q Consensus 696 ~~L~Sgs~D--g~II~IWDv~tg~~l~ 720 (793)
.+++++..+ ..+ ++||+.+++...
T Consensus 384 ~L~f~~~~~g~~~L-~~vdl~~g~~~~ 409 (428)
T PRK01029 384 HLVYSAGNSNESEL-YLISLITKKTRK 409 (428)
T ss_pred EEEEEECCCCCceE-EEEECCCCCEEE
Confidence 444454433 345 888998887654
No 246
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.00 E-value=2.5e-08 Score=110.20 Aligned_cols=225 Identities=11% Similarity=0.058 Sum_probs=153.9
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcccccccCCce
Q 003822 465 ISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGT 544 (793)
Q Consensus 465 d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~~~~~~~~~~ 544 (793)
|-..++.-..|.+|.+.... | ....+.. ...-..++++.+..++++.|+. ..|.-++++.|.-. .
T Consensus 105 D~SK~v~L~~DR~IefHak~-G-~hy~~RI---P~~GRDm~y~~~scDly~~gsg-~evYRlNLEqGrfL-~-------- 169 (703)
T KOG2321|consen 105 DYSKSVFLQNDRTIEFHAKY-G-RHYRTRI---PKFGRDMKYHKPSCDLYLVGSG-SEVYRLNLEQGRFL-N-------- 169 (703)
T ss_pred chhhheEeecCceeeehhhc-C-eeeeeec---CcCCccccccCCCccEEEeecC-cceEEEEccccccc-c--------
Confidence 33445555556666654422 2 2222222 1234567777666666666654 46888888887641 1
Q ss_pred eEecC-CCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcc-----cCCC-----CeEEEEEcCCCCcEEEEEe
Q 003822 545 VTFDE-FDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFAD-----MHKE-----HINVVKFSNHSPSIFATSS 613 (793)
Q Consensus 545 ~~~~~-~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~-----gh~~-----~V~sv~fspdg~~~LaTgs 613 (793)
.+.. .+.++++.+++-.+.+++|+.+|.|-.||.++...+.++.- .|.+ .|+++.|+.+| -.+++|+
T Consensus 170 -P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~g-L~~aVGt 247 (703)
T KOG2321|consen 170 -PFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDG-LHVAVGT 247 (703)
T ss_pred -ccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCc-eeEEeec
Confidence 1111 26789999999999999999999999999998776666541 2333 49999999887 8999999
Q ss_pred CCCeEEEEECCCCCccceEEccCCCCeEEEEEecC--CCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEe
Q 003822 614 FDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPD--DHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYY 691 (793)
Q Consensus 614 ~Dg~IrIWDlrt~~~~~~~~l~~~~~~vsv~fSpd--g~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afs 691 (793)
.+|.|.|||+|+.++..+........+..+.|.+. +..+++.. ...++|||-.+|+....++ ....+...++.
T Consensus 248 s~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~D-k~~~kiWd~~~Gk~~asiE----pt~~lND~C~~ 322 (703)
T KOG2321|consen 248 STGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSMD-KRILKIWDECTGKPMASIE----PTSDLNDFCFV 322 (703)
T ss_pred cCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEecc-hHHhhhcccccCCceeecc----ccCCcCceeee
Confidence 99999999999985443333223334446889775 34444443 5678999999999877775 33457788999
Q ss_pred eCCCeEEEEEeCCCcEEEEEEc
Q 003822 692 LNGRDYIVSGSCDEHVVRICCA 713 (793)
Q Consensus 692 pdg~~~L~Sgs~Dg~II~IWDv 713 (793)
|+++ +++++..++.+ ..|=+
T Consensus 323 p~sG-m~f~Ane~~~m-~~yyi 342 (703)
T KOG2321|consen 323 PGSG-MFFTANESSKM-HTYYI 342 (703)
T ss_pred cCCc-eEEEecCCCcc-eeEEc
Confidence 9998 88899888877 55544
No 247
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=98.99 E-value=1.9e-09 Score=111.86 Aligned_cols=227 Identities=11% Similarity=0.119 Sum_probs=146.9
Q ss_pred EEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCccccc
Q 003822 459 FEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGM 538 (793)
Q Consensus 459 vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~~~~ 538 (793)
..|+| +|+++|+.+.- .+.|-|.++-+..+.+. --..|.-+.|.......+.....|+.|.+|++...+-.
T Consensus 14 c~fSp-~g~yiAs~~~y-rlviRd~~tlq~~qlf~---cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~---- 84 (447)
T KOG4497|consen 14 CSFSP-CGNYIASLSRY-RLVIRDSETLQLHQLFL---CLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWY---- 84 (447)
T ss_pred eeECC-CCCeeeeeeee-EEEEeccchhhHHHHHH---HHHHhhheeeeccceeeeeeeeccceEEEEEeecceeE----
Confidence 57999 99999999865 78888888766554432 23467778887333345666788999999999875431
Q ss_pred ccCCceeEecCCCCeEEEEEccCCCEEEEEE-CCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeCCCe
Q 003822 539 HYGAGTVTFDEFDQLTSVHVNSMDELFLASG-YSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQD 617 (793)
Q Consensus 539 ~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g-~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~Dg~ 617 (793)
...-....++.+++|+|++..++..+ .+-.|.+|.+.+.+....-- -+..+..++|+|+| ++.+.++.-..
T Consensus 85 -----ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~--pK~~~kg~~f~~dg-~f~ai~sRrDC 156 (447)
T KOG4497|consen 85 -----CKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPH--PKTNVKGYAFHPDG-QFCAILSRRDC 156 (447)
T ss_pred -----EEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecc--cccCceeEEECCCC-ceeeeeecccH
Confidence 11223446789999999998877776 59999999999876554322 34456899999999 77777765311
Q ss_pred ---EEEEECCCCCccceEEccCCCCeEEEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCC
Q 003822 618 ---VKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNG 694 (793)
Q Consensus 618 ---IrIWDlrt~~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg 694 (793)
+.|..-........+..+. .....+.|+|||..||+- |..-.-.+..++ .+-.+..++|+|.+
T Consensus 157 kdyv~i~~c~~W~ll~~f~~dT-~DltgieWsPdg~~laVw---------d~~Leykv~aYe----~~lG~k~v~wsP~~ 222 (447)
T KOG4497|consen 157 KDYVQISSCKAWILLKEFKLDT-IDLTGIEWSPDGNWLAVW---------DNVLEYKVYAYE----RGLGLKFVEWSPCN 222 (447)
T ss_pred HHHHHHHhhHHHHHHHhcCCCc-ccccCceECCCCcEEEEe---------cchhhheeeeee----eccceeEEEecccc
Confidence 1111111111111111111 112248999999887764 322111111221 22346678999999
Q ss_pred CeEEEEEeCCCcEEEEEEcCCCcE
Q 003822 695 RDYIVSGSCDEHVVRICCAQTGRR 718 (793)
Q Consensus 695 ~~~L~Sgs~Dg~II~IWDv~tg~~ 718 (793)
+ +|+.|+.|+.+ ||-+--+.+.
T Consensus 223 q-flavGsyD~~l-rvlnh~tWk~ 244 (447)
T KOG4497|consen 223 Q-FLAVGSYDQML-RVLNHFTWKP 244 (447)
T ss_pred c-eEEeeccchhh-hhhceeeeee
Confidence 9 99999999988 8876544443
No 248
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=98.99 E-value=8.4e-09 Score=112.03 Aligned_cols=262 Identities=14% Similarity=0.094 Sum_probs=172.4
Q ss_pred CCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcccccccCCceeEecCCCCeEEEEEcc--CCCEEEEEECCCc
Q 003822 496 GAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNS--MDELFLASGYSKN 573 (793)
Q Consensus 496 ~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~--~~~~lla~g~Dg~ 573 (793)
+|.+.|..|.|. ..|..+++|+.|..|.+||...+...+....+|.. .|....|-| .+..++.++.||.
T Consensus 140 ~H~GcVntV~FN-~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~--------NvfQaKFiP~s~d~ti~~~s~dgq 210 (559)
T KOG1334|consen 140 KHKGCVNTVHFN-QRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCN--------NVFQAKFIPFSGDRTIVTSSRDGQ 210 (559)
T ss_pred CCCCccceeeec-ccCceeeccCccceEEeehhhccCccccccccccc--------chhhhhccCCCCCcCceeccccCc
Confidence 899999999997 78999999999999999999988776555554443 233333444 4567888889999
Q ss_pred EEEEECCC-CcEE--EEEcccCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEECCCCCccceEEccCCCCe-----EEEEE
Q 003822 574 IALYDINS-GRRL--QVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGN-----VMVCF 645 (793)
Q Consensus 574 I~IWDl~t-g~~l--~~~~~gh~~~V~sv~fspdg~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~~~~-----vsv~f 645 (793)
|++=.+.. +... ..+. .|.++|..++.-|+.++.|.+++.|+.+.-+|++...+...+....+... .+++.
T Consensus 211 vr~s~i~~t~~~e~t~rl~-~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~ 289 (559)
T KOG1334|consen 211 VRVSEILETGYVENTKRLA-PHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAV 289 (559)
T ss_pred eeeeeeccccceecceecc-cccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEec
Confidence 99887654 3333 2333 59999999999999999999999999999999998755444433322222 25888
Q ss_pred ecCCC-EEEEEeCCCeEEEEEcCCCcEE------EEEee---ecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCC
Q 003822 646 SPDDH-YLLVSAVDNEVRQLLAVDGRVH------LNFGI---TATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQT 715 (793)
Q Consensus 646 Spdg~-~Lasgs~Dg~I~IwDl~tg~~~------~~l~~---~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~t 715 (793)
.|... .+++|+.|..+++||.+.-... .++.- .......|..++|+.++..+++ ...|..| +++.-.-
T Consensus 290 ~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLa-SYnDe~I-YLF~~~~ 367 (559)
T KOG1334|consen 290 DPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLA-SYNDEDI-YLFNKSM 367 (559)
T ss_pred CCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceee-eecccce-EEecccc
Confidence 88655 7899999999999997653221 11210 0123356788999988874555 4556677 8884332
Q ss_pred CcEEEeeeecCCCCCccceeeeccCCccccCCc--cEEEEEEc-CCCCceeeEeeEEEeCCCcEEEEcCC
Q 003822 716 GRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNM--SILAAYTR-PSSKSEIVKVNLLASTDHCDKECSHG 782 (793)
Q Consensus 716 g~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~--~V~sva~~-P~~~~~iv~~~ltaS~Dg~VkvW~~~ 782 (793)
+.- .+...+.......-..|+||.. .|-+|-|- |. ..-++ +||.=|.|.+|+-.
T Consensus 368 ~~G--------~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPr-sEyVv----SGSDCGhIFiW~K~ 424 (559)
T KOG1334|consen 368 GDG--------SEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPR-SEYVV----SGSDCGHIFIWDKK 424 (559)
T ss_pred ccC--------CCCCCCcchhhccchhhcccccccccceeeeccCc-cceEE----ecCccceEEEEecc
Confidence 211 0000000000111112455544 56667664 53 22333 56667999999854
No 249
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.96 E-value=1.1e-06 Score=108.12 Aligned_cols=305 Identities=15% Similarity=0.165 Sum_probs=192.1
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEE----ECCCCeE--EEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcC
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVV----NHENENI--VSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIR 529 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VW----d~~t~~~--i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~ 529 (793)
|.++.|-+ +...++.+..+|.|.+. +..+... +..+ ...|.+++|+ ||+..|+.+..++++.+-+-.
T Consensus 78 ivs~~yl~-d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~v-----d~GI~a~~WS-PD~Ella~vT~~~~l~~mt~~ 150 (928)
T PF04762_consen 78 IVSFQYLA-DSESLCIALASGDIILVREDPDPDEDEIEIVGSV-----DSGILAASWS-PDEELLALVTGEGNLLLMTRD 150 (928)
T ss_pred EEEEEecc-CCCcEEEEECCceEEEEEccCCCCCceeEEEEEE-----cCcEEEEEEC-CCcCEEEEEeCCCEEEEEecc
Confidence 88999999 88889999999999999 5554433 3333 3689999998 799999999989988776422
Q ss_pred C-------------CCC-cc--------cccccCCcee----------------EecCCCCeEEEEEccCCCEEEEEEC-
Q 003822 530 H-------------MPP-SI--------RGMHYGAGTV----------------TFDEFDQLTSVHVNSMDELFLASGY- 570 (793)
Q Consensus 530 ~-------------~~~-~~--------~~~~~~~~~~----------------~~~~~~~V~sv~~s~~~~~lla~g~- 570 (793)
= +.. .+ ....+..+.. .....+.-..++|-.+|.++++++-
T Consensus 151 fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~ 230 (928)
T PF04762_consen 151 FDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVE 230 (928)
T ss_pred ceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEE
Confidence 0 000 00 0000000000 0012235567889888888888763
Q ss_pred --C---CcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeC---CCeEEEEECCCCCccceEEccC---CCC
Q 003822 571 --S---KNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSF---DQDVKLWDLRQKPIQPCYTASS---SKG 639 (793)
Q Consensus 571 --D---g~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~---Dg~IrIWDlrt~~~~~~~~l~~---~~~ 639 (793)
. ..++||+-+ |....+-. .-.+--.+++|.|.| +++|+... ...|.+|.- +|.....+.++. ...
T Consensus 231 ~~~~~~R~iRVy~Re-G~L~stSE-~v~gLe~~l~WrPsG-~lIA~~q~~~~~~~VvFfEr-NGLrhgeF~l~~~~~~~~ 306 (928)
T PF04762_consen 231 PETGSRRVIRVYSRE-GELQSTSE-PVDGLEGALSWRPSG-NLIASSQRLPDRHDVVFFER-NGLRHGEFTLRFDPEEEK 306 (928)
T ss_pred cCCCceeEEEEECCC-ceEEeccc-cCCCccCCccCCCCC-CEEEEEEEcCCCcEEEEEec-CCcEeeeEecCCCCCCce
Confidence 2 579999877 66544443 233334578999999 88888765 345777764 333333455542 233
Q ss_pred eEEEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEE----EEcCC
Q 003822 640 NVMVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRI----CCAQT 715 (793)
Q Consensus 640 ~vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~I----WDv~t 715 (793)
+..+.|++|+..||+...|. |.+|-..+...-.+..+.......+..+.|+|.....|..++.+|.+ .. |++..
T Consensus 307 v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~-~~~~~~~~v~~ 384 (928)
T PF04762_consen 307 VIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQY-EIYDFAWDVSR 384 (928)
T ss_pred eeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcE-EEEEEEEEEEe
Confidence 44699999999999987555 99999888765444444333444455589999777667777776666 33 33333
Q ss_pred Cc--------EEEeeeecCCCCCccceeeeccCC----ccc----cCCccEEEEEEcCCCCceeeEeeEEEeCCCcEEEE
Q 003822 716 GR--------RLRDISLEGKGSGTSMFVQSLRGD----PFR----DFNMSILAAYTRPSSKSEIVKVNLLASTDHCDKEC 779 (793)
Q Consensus 716 g~--------~l~~~~L~gh~~~~s~~v~sl~g~----~~~----~h~~~V~sva~~P~~~~~iv~~~ltaS~Dg~VkvW 779 (793)
+. .+. .+.|... .++.++.. |.. ....+|.+++|++.. ..++ +-..||++.+|
T Consensus 385 s~~~~~~D~g~va--VIDG~~l----llTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~-~~~a----vl~~d~~l~~~ 453 (928)
T PF04762_consen 385 SPGSSPNDNGTVA--VIDGNKL----LLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSN-SRFA----VLTSDGSLSIY 453 (928)
T ss_pred cCCCCccCceEEE--EEeCCeE----EEecccccCCCchHhceEEcCCCCcEEEEEeCCC-CeEE----EEECCCCEEEE
Confidence 32 223 4444431 12222111 111 244589999999953 3344 77899999998
Q ss_pred cCCCC
Q 003822 780 SHGQH 784 (793)
Q Consensus 780 ~~~~~ 784 (793)
..+..
T Consensus 454 ~~~~~ 458 (928)
T PF04762_consen 454 EWDLK 458 (928)
T ss_pred EecCC
Confidence 85444
No 250
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.95 E-value=2.9e-07 Score=105.04 Aligned_cols=177 Identities=14% Similarity=0.152 Sum_probs=114.1
Q ss_pred cEEEEEcCCCCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEECC---CcEEEEECCCCcEEEEEcccCCCCeEE
Q 003822 522 SLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYS---KNIALYDINSGRRLQVFADMHKEHINV 598 (793)
Q Consensus 522 tV~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~D---g~I~IWDl~tg~~l~~~~~gh~~~V~s 598 (793)
.|.++|.+.... .....+...+....|+|++..++..+.+ ..|.+||+.+++...... ..+.+..
T Consensus 180 ~l~~~d~~g~~~----------~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~--~~g~~~~ 247 (430)
T PRK00178 180 TLQRSDYDGARA----------VTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITN--FEGLNGA 247 (430)
T ss_pred EEEEECCCCCCc----------eEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccC--CCCCcCC
Confidence 366677765432 1122334567889999999998887643 469999999887544322 3344557
Q ss_pred EEEcCCCCcEEEEEeCCC--eEEEEECCCCCccceEEccCCCC-eEEEEEecCCCEEEEEeC-C--CeEEEEEcCCCcEE
Q 003822 599 VKFSNHSPSIFATSSFDQ--DVKLWDLRQKPIQPCYTASSSKG-NVMVCFSPDDHYLLVSAV-D--NEVRQLLAVDGRVH 672 (793)
Q Consensus 599 v~fspdg~~~LaTgs~Dg--~IrIWDlrt~~~~~~~~l~~~~~-~vsv~fSpdg~~Lasgs~-D--g~I~IwDl~tg~~~ 672 (793)
..|+|+|..++++.+.+| .|.+||+.++....+ ..+.. .....|+|||+.|+..+. + ..|+++|+.+++..
T Consensus 248 ~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~l---t~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~ 324 (430)
T PRK00178 248 PAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSRV---TNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAE 324 (430)
T ss_pred eEECCCCCEEEEEEccCCCceEEEEECCCCCeEEc---ccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEE
Confidence 899999944444665555 588889988754332 22222 234789999998877664 3 36788888887753
Q ss_pred EEEeeecCCCCCcEEEEEeeCCCeEEEEEe-CCC--cEEEEEEcCCCcEE
Q 003822 673 LNFGITATGSSQNYTRSYYLNGRDYIVSGS-CDE--HVVRICCAQTGRRL 719 (793)
Q Consensus 673 ~~l~~~~~~~~~v~s~afspdg~~~L~Sgs-~Dg--~II~IWDv~tg~~l 719 (793)
. +.. .........|+|+|+ +|+..+ .++ .+ .+||+.+++..
T Consensus 325 ~-lt~---~~~~~~~~~~Spdg~-~i~~~~~~~~~~~l-~~~dl~tg~~~ 368 (430)
T PRK00178 325 R-VTF---VGNYNARPRLSADGK-TLVMVHRQDGNFHV-AAQDLQRGSVR 368 (430)
T ss_pred E-eec---CCCCccceEECCCCC-EEEEEEccCCceEE-EEEECCCCCEE
Confidence 2 321 122334578999999 555444 333 45 88999888653
No 251
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=98.93 E-value=2.9e-08 Score=116.51 Aligned_cols=229 Identities=13% Similarity=0.126 Sum_probs=149.8
Q ss_pred CCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcccccccCCcee
Q 003822 466 SCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTV 545 (793)
Q Consensus 466 ~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~~~~~~~~~~~ 545 (793)
+.+++++..-+.+.+-+..... ...+ .+.|....+. .....++.+..+..+-+||...+............ .
T Consensus 61 ~~~~v~~~~~~~v~~~~~~~~~-~~~~-----s~wi~g~~l~-~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~-~ 132 (967)
T KOG0974|consen 61 SGKIVTCAKSDEVYVKEASNQI-IERF-----SDWIFGAKLF-EENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERC-T 132 (967)
T ss_pred cceEEEEEeecceeecchhhhh-hhhc-----cccccccchh-hhcceEEEEEcCceEEEEecccCceehhcCCCceE-E
Confidence 3456666655555554433211 1111 2334443433 45667888888889999999875542222111111 1
Q ss_pred EecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEECCC
Q 003822 546 TFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQ 625 (793)
Q Consensus 546 ~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~Dg~IrIWDlrt 625 (793)
+ ....-+.+++..=++++++.-+.|.+|+.........+. ||.+.|..+.|+.+| .++++.|.|.++|+|++.+
T Consensus 133 -l---~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~-GHeG~iF~i~~s~dg-~~i~s~SdDRsiRlW~i~s 206 (967)
T KOG0974|consen 133 -L---YSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLK-GHEGSIFSIVTSLDG-RYIASVSDDRSIRLWPIDS 206 (967)
T ss_pred -E---EeEEEEeccCcEEEEEeccccccEEEEeccccCCcceec-ccCCceEEEEEccCC-cEEEEEecCcceeeeeccc
Confidence 1 111112222233345555568999999998433333455 799999999999999 8999999999999999999
Q ss_pred CCccceEEccCCCCeEEEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCCCeEEEEEeCCC
Q 003822 626 KPIQPCYTASSSKGNVMVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNGRDYIVSGSCDE 705 (793)
Q Consensus 626 ~~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg 705 (793)
.+.....-+.+...+..++|.|. .+++++.|-+.++|+.. +..+..+..+ ....++.++..++.. .++|++.||
T Consensus 207 ~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~-~~~l~~y~~h--~g~~iw~~~~~~~~~-~~vT~g~Ds 280 (967)
T KOG0974|consen 207 REVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVN-GTQLEVYDEH--SGKGIWKIAVPIGVI-IKVTGGNDS 280 (967)
T ss_pred ccccCcccccccceeEEEEeccc--eeEEeccceEEEEEecc-cceehhhhhh--hhcceeEEEEcCCce-EEEeeccCc
Confidence 76544333333334557999998 89999999999999654 4444555432 234577787777766 999999999
Q ss_pred cEEEEEEcCC
Q 003822 706 HVVRICCAQT 715 (793)
Q Consensus 706 ~II~IWDv~t 715 (793)
.+ ++|+...
T Consensus 281 ~l-k~~~l~~ 289 (967)
T KOG0974|consen 281 TL-KLWDLNG 289 (967)
T ss_pred ch-hhhhhhc
Confidence 99 9999854
No 252
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.93 E-value=5.8e-09 Score=126.97 Aligned_cols=223 Identities=15% Similarity=0.248 Sum_probs=161.8
Q ss_pred EEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcccccccCCceeEec
Q 003822 469 MVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFD 548 (793)
Q Consensus 469 Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~~~~~~~~~~~~~~ 548 (793)
+.....++...-|..+.+..+. + .+-..|.++.-+ |...+.+||+.||.|++|....++..... ...
T Consensus 2183 ~~~~n~~~~~~tq~~~~~~~~~--k--~~v~~v~r~~sH-p~~~~Yltgs~dgsv~~~~w~~~~~v~~~--------rt~ 2249 (2439)
T KOG1064|consen 2183 FTPSNLPWLGSTQTSRGASVMI--K--HPVENVRRMTSH-PSDPYYLTGSQDGSVRMFEWGHGQQVVCF--------RTA 2249 (2439)
T ss_pred CCcccCCccccceecccceeEe--e--cccCceeeecCC-CCCceEEecCCCceEEEEeccCCCeEEEe--------ecc
Confidence 3333344555555544333221 1 344567777755 45568899999999999999887652211 112
Q ss_pred CCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeC---CCeEEEEECCC
Q 003822 549 EFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSF---DQDVKLWDLRQ 625 (793)
Q Consensus 549 ~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~---Dg~IrIWDlrt 625 (793)
....|+.+.|+.+|+.+-++..||.+.+|.+. .++....+ .|........|-. ..+++++. ++.+.+||.-.
T Consensus 2250 g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~q-chnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~ 2324 (2439)
T KOG1064|consen 2250 GNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQ-CHNKALSDFRFIG---SLLATAGRSSDNRNVCLWDTLL 2324 (2439)
T ss_pred CcchhhhhhhcccCCceeeeccCCceeecccC-Ccceeccc-cCCccccceeeee---hhhhccccCCCCCcccchhccc
Confidence 23668899999999999999999999999988 66777777 6988888888865 45776654 67899999865
Q ss_pred CCccceEEccCCCCeEEEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCCCeEEEEEeCCC
Q 003822 626 KPIQPCYTASSSKGNVMVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNGRDYIVSGSCDE 705 (793)
Q Consensus 626 ~~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg 705 (793)
.........-+..+.+.+++.|..+.|++|+.+|.|++||++..++.+++.. +. .+.++++|+..|
T Consensus 2325 ~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~------------~~--~~~~f~~~ss~g 2390 (2439)
T KOG1064|consen 2325 PPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA------------LD--TREYFVTGSSEG 2390 (2439)
T ss_pred CcccceeeeecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh------------hh--hhheeeccCccc
Confidence 4333333323334566799999999999999999999999998888776642 22 344999999999
Q ss_pred cEEEEEEcCCCcEEEeeeecC
Q 003822 706 HVVRICCAQTGRRLRDISLEG 726 (793)
Q Consensus 706 ~II~IWDv~tg~~l~~~~L~g 726 (793)
.+ +||++..-..++ ++.+
T Consensus 2391 ~i-kIw~~s~~~ll~--~~p~ 2408 (2439)
T KOG1064|consen 2391 NI-KIWRLSEFGLLH--TFPS 2408 (2439)
T ss_pred ce-EEEEccccchhh--cCch
Confidence 99 999999888887 4443
No 253
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.92 E-value=1e-06 Score=96.62 Aligned_cols=242 Identities=12% Similarity=0.058 Sum_probs=143.2
Q ss_pred eEEEEEeCCCCCEEEEEe----------CCCeEEEEECCCCeEEEEEeccCC-----CCCEEEEEEeeCCCCEEEEEE-c
Q 003822 456 PRQFEYHPSISCLMVFGT----------LDGEIVVVNHENENIVSYIPSFGA-----MNSVLGLCWLKKYPSKLIAGS-D 519 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs----------~DG~I~VWd~~t~~~i~~l~~~~h-----~~~V~sv~fs~~~g~~Lasgs-~ 519 (793)
+.-+ ++| +++.++++. .+..|.|||..+.+.+..+..... ......++++ ++|+++++.. .
T Consensus 49 P~~~-~sp-Dg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls-~dgk~l~V~n~~ 125 (352)
T TIGR02658 49 PNPV-VAS-DGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLT-PDNKTLLFYQFS 125 (352)
T ss_pred Ccee-ECC-CCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEEC-CCCCEEEEecCC
Confidence 4545 999 676666555 478999999999999988875322 1122355665 7999888776 3
Q ss_pred -CCcEEEEEcCCCCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCC-CcEE-E---EEcccCC
Q 003822 520 -NGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINS-GRRL-Q---VFADMHK 593 (793)
Q Consensus 520 -DgtV~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~t-g~~l-~---~~~~gh~ 593 (793)
+..|.+.|+.+++....... ..+...+ .. +. ..+.+-+.||......+.+ |+.. . .+. +-.
T Consensus 126 p~~~V~VvD~~~~kvv~ei~v-p~~~~vy---------~t-~e-~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~-~~~ 192 (352)
T TIGR02658 126 PSPAVGVVDLEGKAFVRMMDV-PDCYHIF---------PT-AN-DTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFH-PED 192 (352)
T ss_pred CCCEEEEEECCCCcEEEEEeC-CCCcEEE---------Ee-cC-CccEEEeecCceEEEEecCCCceEEeeeeeec-CCc
Confidence 68999999998765221111 1111111 00 11 1111222233332222221 2211 1 111 000
Q ss_pred CCeE-EEEEcC-CCCcEEEEEeCCCeEEEEECCCCCcc---ce--EEccC------CCCeEEEEEecCCCEEEEEe----
Q 003822 594 EHIN-VVKFSN-HSPSIFATSSFDQDVKLWDLRQKPIQ---PC--YTASS------SKGNVMVCFSPDDHYLLVSA---- 656 (793)
Q Consensus 594 ~~V~-sv~fsp-dg~~~LaTgs~Dg~IrIWDlrt~~~~---~~--~~l~~------~~~~vsv~fSpdg~~Lasgs---- 656 (793)
.++. .-.|.+ +| ..+..... |+|.+.|+...... +. ..... ..++--++++|+|+.+++..
T Consensus 193 ~~v~~rP~~~~~dg-~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~ 270 (352)
T TIGR02658 193 EYLINHPAYSNKSG-RLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRA 270 (352)
T ss_pred cccccCCceEcCCC-cEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCc
Confidence 0100 004455 66 56655555 99999996543211 11 11110 11112389999999998853
Q ss_pred ------CCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCCCeEEEEEe-CCCcEEEEEEcCCCcEEE
Q 003822 657 ------VDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNGRDYIVSGS-CDEHVVRICCAQTGRRLR 720 (793)
Q Consensus 657 ------~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs-~Dg~II~IWDv~tg~~l~ 720 (793)
..+.|.++|..+++.+..+. ....+..++++||++.+|++.. .++.| .+.|+.+++.++
T Consensus 271 ~~thk~~~~~V~ViD~~t~kvi~~i~----vG~~~~~iavS~Dgkp~lyvtn~~s~~V-sViD~~t~k~i~ 336 (352)
T TIGR02658 271 KWTHKTASRFLFVVDAKTGKRLRKIE----LGHEIDSINVSQDAKPLLYALSTGDKTL-YIFDAETGKELS 336 (352)
T ss_pred cccccCCCCEEEEEECCCCeEEEEEe----CCCceeeEEECCCCCeEEEEeCCCCCcE-EEEECcCCeEEe
Confidence 22589999999999988885 3457889999999994555444 67788 999999999999
No 254
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.91 E-value=1.8e-06 Score=96.63 Aligned_cols=231 Identities=16% Similarity=0.131 Sum_probs=144.9
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcccccccCCce
Q 003822 465 ISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGT 544 (793)
Q Consensus 465 d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~~~~~~~~~~ 544 (793)
++..++.++.+|.+..+|..+|+.+...... +.+.+.-.. .+..++.++.+|.+..||.++++.......... .
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~---~~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~-~ 177 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLS---SEVLSPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYSRVTP-A 177 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEeeeeccC---ceeecCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEccCCC-c
Confidence 3567888889999999999999988766532 223221111 345777788899999999998876443221110 0
Q ss_pred eEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCC---C------e-EEEEEcCCCCcEEEEEeC
Q 003822 545 VTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKE---H------I-NVVKFSNHSPSIFATSSF 614 (793)
Q Consensus 545 ~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~---~------V-~sv~fspdg~~~LaTgs~ 614 (793)
...... .+..+ .++.++++..++.+..+|+++|+.+......... . + ....+ .+ ..+++++.
T Consensus 178 ~~~~~~---~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~--~~-~~vy~~~~ 249 (377)
T TIGR03300 178 LTLRGS---ASPVI--ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV--DG-GQVYAVSY 249 (377)
T ss_pred eeecCC---CCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE--EC-CEEEEEEc
Confidence 001000 01111 2356777778899999999999887654411110 0 0 11112 23 46777888
Q ss_pred CCeEEEEECCCCCccceEEccCCCCeEEEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCC
Q 003822 615 DQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNG 694 (793)
Q Consensus 615 Dg~IrIWDlrt~~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg 694 (793)
+|.+..||..+++. ....... ..... ..++..+++++.+|.+..+|..+|+.+...... .......... .+
T Consensus 250 ~g~l~a~d~~tG~~--~W~~~~~-~~~~p--~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~--~~~~~ssp~i--~g 320 (377)
T TIGR03300 250 QGRVAALDLRSGRV--LWKRDAS-SYQGP--AVDDNRLYVTDADGVVVALDRRSGSELWKNDEL--KYRQLTAPAV--VG 320 (377)
T ss_pred CCEEEEEECCCCcE--EEeeccC-CccCc--eEeCCEEEEECCCCeEEEEECCCCcEEEccccc--cCCccccCEE--EC
Confidence 99999999998743 3333211 11112 235678888889999999999999876554211 1111111111 34
Q ss_pred CeEEEEEeCCCcEEEEEEcCCCcEEE
Q 003822 695 RDYIVSGSCDEHVVRICCAQTGRRLR 720 (793)
Q Consensus 695 ~~~L~Sgs~Dg~II~IWDv~tg~~l~ 720 (793)
. .|++++.+|.+ +++|..+|+.+.
T Consensus 321 ~-~l~~~~~~G~l-~~~d~~tG~~~~ 344 (377)
T TIGR03300 321 G-YLVVGDFEGYL-HWLSREDGSFVA 344 (377)
T ss_pred C-EEEEEeCCCEE-EEEECCCCCEEE
Confidence 4 78899999999 999999999998
No 255
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.89 E-value=7.1e-07 Score=102.35 Aligned_cols=160 Identities=16% Similarity=0.183 Sum_probs=102.4
Q ss_pred CCCeEEEEEccCCCEEEEEEC-C--CcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeCCCe--EEEEECC
Q 003822 550 FDQLTSVHVNSMDELFLASGY-S--KNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQD--VKLWDLR 624 (793)
Q Consensus 550 ~~~V~sv~~s~~~~~lla~g~-D--g~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~Dg~--IrIWDlr 624 (793)
...+.+..|+|++..++.++. + ..|++||+.+++...... ..+.....+|+|+|..++++.+.+|. |.+||+.
T Consensus 217 ~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~--~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~ 294 (448)
T PRK04792 217 PEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTS--FPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIA 294 (448)
T ss_pred CCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecC--CCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECC
Confidence 456788899999998888764 3 368999999887533221 22334578999999545556677775 7788888
Q ss_pred CCCccceEEccCCC-CeEEEEEecCCCEEEEEeC-C--CeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCCCeEEEE
Q 003822 625 QKPIQPCYTASSSK-GNVMVCFSPDDHYLLVSAV-D--NEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNGRDYIVS 700 (793)
Q Consensus 625 t~~~~~~~~l~~~~-~~vsv~fSpdg~~Lasgs~-D--g~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg~~~L~S 700 (793)
+++...+ ..+. ......|+|||++|+..+. + ..|+++|+.+++... +.. ........+|+|||+.++++
T Consensus 295 tg~~~~l---t~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~---~g~~~~~~~~SpDG~~l~~~ 367 (448)
T PRK04792 295 TKALTRI---TRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LTF---EGEQNLGGSITPDGRSMIMV 367 (448)
T ss_pred CCCeEEC---ccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-Eec---CCCCCcCeeECCCCCEEEEE
Confidence 7643322 2222 2335899999999877664 3 357777888776533 321 12223456899999944444
Q ss_pred EeCCCcE-EEEEEcCCCcE
Q 003822 701 GSCDEHV-VRICCAQTGRR 718 (793)
Q Consensus 701 gs~Dg~I-I~IWDv~tg~~ 718 (793)
+..++.. |.++|+.+++.
T Consensus 368 ~~~~g~~~I~~~dl~~g~~ 386 (448)
T PRK04792 368 NRTNGKFNIARQDLETGAM 386 (448)
T ss_pred EecCCceEEEEEECCCCCe
Confidence 4444433 15567777764
No 256
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.88 E-value=7.9e-09 Score=116.50 Aligned_cols=246 Identities=18% Similarity=0.174 Sum_probs=167.6
Q ss_pred eEEEEEeCC-CCCEEEEEeCCCeEEEEECCCC--eEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCC
Q 003822 456 PRQFEYHPS-ISCLMVFGTLDGEIVVVNHENE--NIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMP 532 (793)
Q Consensus 456 V~~vafsP~-d~~~Lasgs~DG~I~VWd~~t~--~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~ 532 (793)
|-.+.|+|. ...+-++......-.||++... +.+ .+-.++|..+|+.+.|.+.....+++++.|-.|..||+++..
T Consensus 70 vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aI-ef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~ 148 (1081)
T KOG0309|consen 70 VADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAI-EFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPH 148 (1081)
T ss_pred hcceecccCCCCceeEEecCcchhhhhhhhcCCccce-EEEEecCccceeccccCCCCCcceeeccccccceeeeccCCC
Confidence 344556552 2234444444556778987532 223 333459999999999998889999999999999999999865
Q ss_pred CcccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCC-cEEEEEcccCCCCeEEEEEcCCCCcEEEE
Q 003822 533 PSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSG-RRLQVFADMHKEHINVVKFSNHSPSIFAT 611 (793)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg-~~l~~~~~gh~~~V~sv~fspdg~~~LaT 611 (793)
..+-. ..........|+|+-.++.+++.+..+.|.+||.+.| .++..++ +|...|+.++|+..-...+.+
T Consensus 149 ~p~ys--------~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K-~~vs~vn~~~fnr~~~s~~~s 219 (1081)
T KOG0309|consen 149 RPFYS--------TSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLK-GHVSSVNSIDFNRFKYSEIMS 219 (1081)
T ss_pred cceee--------eecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEec-ccceeeehHHHhhhhhhhhcc
Confidence 42221 1222355678899999999999999999999999986 5677788 699999999998765567899
Q ss_pred EeCCCeEEEEECCCCCccceEEccCCCCeEEEEEecCCC--EEEEEeCCCeEEEE---------EcCCC-cEEEEEeeec
Q 003822 612 SSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDH--YLLVSAVDNEVRQL---------LAVDG-RVHLNFGITA 679 (793)
Q Consensus 612 gs~Dg~IrIWDlrt~~~~~~~~l~~~~~~vsv~fSpdg~--~Lasgs~Dg~I~Iw---------Dl~tg-~~~~~l~~~~ 679 (793)
++.||+|+.||.................+..-+|-|-|. ++.-.-.++.+.++ +..++ +.+++|.
T Consensus 220 ~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~--- 296 (1081)
T KOG0309|consen 220 SSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFV--- 296 (1081)
T ss_pred cCCCCceeeecccccccccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeec---
Confidence 999999999999876545555555555555566777443 32222223344444 33332 4566665
Q ss_pred CCCCCcEEEEEee--------CC-CeEEEEEeCCCcEEEEEEcCC
Q 003822 680 TGSSQNYTRSYYL--------NG-RDYIVSGSCDEHVVRICCAQT 715 (793)
Q Consensus 680 ~~~~~v~s~afsp--------dg-~~~L~Sgs~Dg~II~IWDv~t 715 (793)
+|...|....|-. |. ...|+|=|.|.++ |+|-+.+
T Consensus 297 GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~l-rlWpI~~ 340 (1081)
T KOG0309|consen 297 GHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTL-RLWPIDS 340 (1081)
T ss_pred CcchHHHHHhhhhcccccCCCCccceeEEEeecCCce-EeeeccH
Confidence 2333343333321 11 1258999999999 9998754
No 257
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.88 E-value=8.2e-06 Score=89.60 Aligned_cols=269 Identities=12% Similarity=0.069 Sum_probs=157.6
Q ss_pred CeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEc----------CCcEEEEEcCCCCCcccccccCCcee
Q 003822 476 GEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSD----------NGSLKLYDIRHMPPSIRGMHYGAGTV 545 (793)
Q Consensus 476 G~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~----------DgtV~vWDl~~~~~~~~~~~~~~~~~ 545 (793)
++|.|.|..+++.+..++. +..... + .+ ++++.++++.. +..|.+||..+.+.......+...
T Consensus 27 ~~v~ViD~~~~~v~g~i~~-G~~P~~--~-~s-pDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p-- 99 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDG-GFLPNP--V-VA-SDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGP-- 99 (352)
T ss_pred ceEEEEECCCCEEEEEEEc-cCCCce--e-EC-CCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCc--
Confidence 8999999999999988875 332222 3 45 78887776654 789999999997763222211110
Q ss_pred EecCCCCeEEEEEccCCCEEEEEE-C-CCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEC
Q 003822 546 TFDEFDQLTSVHVNSMDELFLASG-Y-SKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDL 623 (793)
Q Consensus 546 ~~~~~~~V~sv~~s~~~~~lla~g-~-Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~Dg~IrIWDl 623 (793)
.+........++++|++..+++.. . +..|.++|+.+++.+..+.- .+...-...++.. .+ +-+.||.....-+
T Consensus 100 ~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v--p~~~~vy~t~e~~--~~-~~~~Dg~~~~v~~ 174 (352)
T TIGR02658 100 RFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV--PDCYHIFPTANDT--FF-MHCRDGSLAKVGY 174 (352)
T ss_pred hhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeC--CCCcEEEEecCCc--cE-EEeecCceEEEEe
Confidence 111112345778888888888776 4 79999999999999998872 2222222222221 11 2223443333222
Q ss_pred CCCCccceEE---ccCCCCeE--EEEEec-CCCEEEEEeCCCeEEEEEcCCC-----cEEEEEeeecC----CCCCcEEE
Q 003822 624 RQKPIQPCYT---ASSSKGNV--MVCFSP-DDHYLLVSAVDNEVRQLLAVDG-----RVHLNFGITAT----GSSQNYTR 688 (793)
Q Consensus 624 rt~~~~~~~~---l~~~~~~v--sv~fSp-dg~~Lasgs~Dg~I~IwDl~tg-----~~~~~l~~~~~----~~~~v~s~ 688 (793)
.......... +.+....+ .-.|++ +|+++++... |.|.+.|+... +....+..... .......+
T Consensus 175 d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~i 253 (352)
T TIGR02658 175 GTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQV 253 (352)
T ss_pred cCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeE
Confidence 2110000111 11100111 114566 8998888886 99999996443 22222211100 11122238
Q ss_pred EEeeCCCeEEEEEe---------CCCcEEEEEEcCCCcEEEeeeec-CCCCCccceeeeccCCccccCCccEEEEEEcCC
Q 003822 689 SYYLNGRDYIVSGS---------CDEHVVRICCAQTGRRLRDISLE-GKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPS 758 (793)
Q Consensus 689 afspdg~~~L~Sgs---------~Dg~II~IWDv~tg~~l~~~~L~-gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~ 758 (793)
+++++++..++... ..+.| .++|..+++.+. ++. |+ .+.+++++|+
T Consensus 254 a~~~dg~~lyV~~~~~~~~thk~~~~~V-~ViD~~t~kvi~--~i~vG~---------------------~~~~iavS~D 309 (352)
T TIGR02658 254 AYHRARDRIYLLADQRAKWTHKTASRFL-FVVDAKTGKRLR--KIELGH---------------------EIDSINVSQD 309 (352)
T ss_pred EEcCCCCEEEEEecCCccccccCCCCEE-EEEECCCCeEEE--EEeCCC---------------------ceeeEEECCC
Confidence 99999984444331 12467 999999999998 443 32 4788999998
Q ss_pred CCceeeEeeEEEe-CCCcEEEEcCCCCC
Q 003822 759 SKSEIVKVNLLAS-TDHCDKECSHGQHS 785 (793)
Q Consensus 759 ~~~~iv~~~ltaS-~Dg~VkvW~~~~~~ 785 (793)
++..+. +.. .++.|.+.+.....
T Consensus 310 gkp~ly----vtn~~s~~VsViD~~t~k 333 (352)
T TIGR02658 310 AKPLLY----ALSTGDKTLYIFDAETGK 333 (352)
T ss_pred CCeEEE----EeCCCCCcEEEEECcCCe
Confidence 763444 443 67889998876553
No 258
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.85 E-value=6.3e-07 Score=99.43 Aligned_cols=239 Identities=11% Similarity=0.175 Sum_probs=153.8
Q ss_pred EEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeC-CCCEEEE-----EEcCCcEEEEEcCC
Q 003822 457 RQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKK-YPSKLIA-----GSDNGSLKLYDIRH 530 (793)
Q Consensus 457 ~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~-~g~~Las-----gs~DgtV~vWDl~~ 530 (793)
++..|++ |.. +++--..+.+.+|+..+.+.+.. .-|...|....++|. ....+|+ .|.-+.|++|....
T Consensus 129 W~~qfs~-dEs-l~arlv~nev~f~~~~~f~~~~~---kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~ 203 (566)
T KOG2315|consen 129 WVPQFSI-DES-LAARLVSNEVQFYDLGSFKTIQH---KLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPE 203 (566)
T ss_pred ccccccc-chh-hhhhhhcceEEEEecCCccceee---eeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEecccc
Confidence 4566777 443 44444467899999876433221 124667888888754 2344444 35567899998873
Q ss_pred CCCcccccccCCceeEecCCCCeEEEEEccCCCEEEE-EE-C-C---------CcEEEEECCCCcEEEEEcccCCCCeEE
Q 003822 531 MPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLA-SG-Y-S---------KNIALYDINSGRRLQVFADMHKEHINV 598 (793)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla-~g-~-D---------g~I~IWDl~tg~~l~~~~~gh~~~V~s 598 (793)
..... .....+|-..+ =..+.|++.+.-+++ ++ + | .+++++++........+. ..++|.+
T Consensus 204 ~~~~~-----~~a~ksFFkad-kvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~--k~GPVhd 275 (566)
T KOG2315|consen 204 EGQHQ-----PVANKSFFKAD-KVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL--KEGPVHD 275 (566)
T ss_pred ccccc-----hhhhccccccc-eeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC--CCCCceE
Confidence 22100 00011111111 234567665543332 22 1 3 358888888445555554 6899999
Q ss_pred EEEcCCCCcEEEE-EeCCCeEEEEECCCCCccceEEccCCCCeEEEEEecCCCEEEEEeC---CCeEEEEEcCCCcEEEE
Q 003822 599 VKFSNHSPSIFAT-SSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLVSAV---DNEVRQLLAVDGRVHLN 674 (793)
Q Consensus 599 v~fspdg~~~LaT-gs~Dg~IrIWDlrt~~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs~---Dg~I~IwDl~tg~~~~~ 674 (793)
+.|+|++..+.++ |-.-..+.|||++. .+++.+.. ....++-|+|.|++|+.++- -|.+-|||+.+.+++..
T Consensus 276 v~W~~s~~EF~VvyGfMPAkvtifnlr~---~~v~df~e-gpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~ 351 (566)
T KOG2315|consen 276 VTWSPSGREFAVVYGFMPAKVTIFNLRG---KPVFDFPE-GPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAK 351 (566)
T ss_pred EEECCCCCEEEEEEecccceEEEEcCCC---CEeEeCCC-CCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccc
Confidence 9999999444333 33467799999977 46666543 23346899999999998875 47899999999888877
Q ss_pred EeeecCCCCCcEEEEEeeCCCeEEEEEeC------CCcEEEEEEcCCCcEEE
Q 003822 675 FGITATGSSQNYTRSYYLNGRDYIVSGSC------DEHVVRICCAQTGRRLR 720 (793)
Q Consensus 675 l~~~~~~~~~v~s~afspdg~~~L~Sgs~------Dg~II~IWDv~tg~~l~ 720 (793)
+. ........|+|||+ +++|++. |..+ +||++ +|.++.
T Consensus 352 ~~-----a~~tt~~eW~PdGe-~flTATTaPRlrvdNg~-Kiwhy-tG~~l~ 395 (566)
T KOG2315|consen 352 FK-----AANTTVFEWSPDGE-YFLTATTAPRLRVDNGI-KIWHY-TGSLLH 395 (566)
T ss_pred cc-----cCCceEEEEcCCCc-EEEEEeccccEEecCCe-EEEEe-cCceee
Confidence 74 33456789999999 8877764 5777 99987 566655
No 259
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.84 E-value=6.8e-07 Score=99.17 Aligned_cols=273 Identities=14% Similarity=0.115 Sum_probs=173.8
Q ss_pred eEEEEEeCCCCCEEEEEe-----CC-----CeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEE
Q 003822 456 PRQFEYHPSISCLMVFGT-----LD-----GEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKL 525 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs-----~D-----G~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~v 525 (793)
++.+.|+| -+.+|.+-- .+ -.+++|+++++.....+.... +.. ++..|+ .+.. ++.=-..+.+++
T Consensus 76 ~~~L~fSP-~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~-Q~~-W~~qfs-~dEs-l~arlv~nev~f 150 (566)
T KOG2315|consen 76 TYDLLFSP-KGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKM-QNG-WVPQFS-IDES-LAARLVSNEVQF 150 (566)
T ss_pred eeeeeecc-cccccccccccccccCCCCCCCceeeeeeccceehhheehhh-hcC-cccccc-cchh-hhhhhhcceEEE
Confidence 78899999 777877521 12 347799999966655554322 222 678887 4443 333334467999
Q ss_pred EEcCCCCCcccccccCCceeEecCCCCeEEEEEccC-CCEEEEE------ECCCcEEEEECCCCcEE-----EEEcccCC
Q 003822 526 YDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSM-DELFLAS------GYSKNIALYDINSGRRL-----QVFADMHK 593 (793)
Q Consensus 526 WDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~-~~~lla~------g~Dg~I~IWDl~tg~~l-----~~~~~gh~ 593 (793)
|+....+... .--+...|..+.++|. ....++. |.-+.|+||-......- ++|- .
T Consensus 151 ~~~~~f~~~~----------~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFF---k 217 (566)
T KOG2315|consen 151 YDLGSFKTIQ----------HKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFF---K 217 (566)
T ss_pred EecCCcccee----------eeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhcccc---c
Confidence 9998743321 1223356788888776 3444444 23467999987632211 1221 1
Q ss_pred CCeEEEEEcCCCCcEEEEEeC--CC---------eEEEEECCCCCccceEEccCCCCeEEEEEecCCCEEEEEe--CCCe
Q 003822 594 EHINVVKFSNHSPSIFATSSF--DQ---------DVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLVSA--VDNE 660 (793)
Q Consensus 594 ~~V~sv~fspdg~~~LaTgs~--Dg---------~IrIWDlrt~~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs--~Dg~ 660 (793)
..--.+.|++-|..+|+..+. |. ++++.++... .....+.....+.++.|+|+|+.+++.. .=..
T Consensus 218 adkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~--s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAk 295 (566)
T KOG2315|consen 218 ADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGE--SVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAK 295 (566)
T ss_pred cceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCc--eEEEecCCCCCceEEEECCCCCEEEEEEecccce
Confidence 223357788887655555443 33 5788887733 4445555555666799999998877654 4568
Q ss_pred EEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCCCeEEEEEeC---CCcEEEEEEcCCCcEEEeeeecCCCCCccceeee
Q 003822 661 VRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNGRDYIVSGSC---DEHVVRICCAQTGRRLRDISLEGKGSGTSMFVQS 737 (793)
Q Consensus 661 I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~---Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~s 737 (793)
+.|||++ +..+..+ +...-..+-|+|.|. +|+.+|- -|.+ -|||+.+.+++. .+...+
T Consensus 296 vtifnlr-~~~v~df-----~egpRN~~~fnp~g~-ii~lAGFGNL~G~m-EvwDv~n~K~i~--~~~a~~--------- 356 (566)
T KOG2315|consen 296 VTIFNLR-GKPVFDF-----PEGPRNTAFFNPHGN-IILLAGFGNLPGDM-EVWDVPNRKLIA--KFKAAN--------- 356 (566)
T ss_pred EEEEcCC-CCEeEeC-----CCCCccceEECCCCC-EEEEeecCCCCCce-EEEeccchhhcc--ccccCC---------
Confidence 9999975 6666655 445566788999999 5555443 4788 999999988887 433322
Q ss_pred ccCCccccCCccEEEEEEcCCCCceeeEeeEEEe------CCCcEEEEcCCCC
Q 003822 738 LRGDPFRDFNMSILAAYTRPSSKSEIVKVNLLAS------TDHCDKECSHGQH 784 (793)
Q Consensus 738 l~g~~~~~h~~~V~sva~~P~~~~~iv~~~ltaS------~Dg~VkvW~~~~~ 784 (793)
-+-..|+|++.. ++ ||+ -|..+|||++...
T Consensus 357 ------------tt~~eW~PdGe~-fl----TATTaPRlrvdNg~KiwhytG~ 392 (566)
T KOG2315|consen 357 ------------TTVFEWSPDGEY-FL----TATTAPRLRVDNGIKIWHYTGS 392 (566)
T ss_pred ------------ceEEEEcCCCcE-EE----EEeccccEEecCCeEEEEecCc
Confidence 234789997543 33 454 2788999998654
No 260
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=98.82 E-value=1e-07 Score=111.97 Aligned_cols=188 Identities=13% Similarity=0.108 Sum_probs=143.0
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEE---EEEE-eeCCCCEEEEEEcCCcEEEEEcCCCCCccccccc
Q 003822 465 ISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVL---GLCW-LKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHY 540 (793)
Q Consensus 465 d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~---sv~f-s~~~g~~Lasgs~DgtV~vWDl~~~~~~~~~~~~ 540 (793)
+...++.++.+..+.+||...+.....+. +..... ++-+ ...+.-++++|+.-+.|.+|+....+..
T Consensus 98 e~k~i~l~~~~ns~~i~d~~~~~~~~~i~---~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p------ 168 (967)
T KOG0974|consen 98 ENKKIALVTSRNSLLIRDSKNSSVLSKIQ---SDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKP------ 168 (967)
T ss_pred hcceEEEEEcCceEEEEecccCceehhcC---CCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCc------
Confidence 55788899999999999998777666553 222211 1111 1134558899999999999999843321
Q ss_pred CCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeCCCeEEE
Q 003822 541 GAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKL 620 (793)
Q Consensus 541 ~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~Dg~IrI 620 (793)
.....|.+.+.++.++.++.++++.+.|.++++|++.+++.....-.+|+..|..+.|.|. .++|++.|.+.++
T Consensus 169 ---~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n---~i~t~gedctcrv 242 (967)
T KOG0974|consen 169 ---IRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN---RIITVGEDCTCRV 242 (967)
T ss_pred ---ceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc---eeEEeccceEEEE
Confidence 1345677889999999999999999999999999999988766222379999999999985 7999999999999
Q ss_pred EECCCCCccceEEccCCCCeEEEEEecCCCEEEEEeCCCeEEEEEcCC
Q 003822 621 WDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLVSAVDNEVRQLLAVD 668 (793)
Q Consensus 621 WDlrt~~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~t 668 (793)
|+....... ++.-+....+..++..++...+++++.|+.+++||+..
T Consensus 243 W~~~~~~l~-~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 243 WGVNGTQLE-VYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred Eecccceeh-hhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 977654333 33333334555789999999999999999999999754
No 261
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.81 E-value=3.2e-06 Score=94.74 Aligned_cols=226 Identities=15% Similarity=0.087 Sum_probs=145.4
Q ss_pred CCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcccccccCCcee
Q 003822 466 SCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTV 545 (793)
Q Consensus 466 ~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~~~~~~~~~~~ 545 (793)
+..+++++.+|.|..+|..+|+.+......+. ...... .++..++.++.+|.+..+|..+++........
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~--~~~~p~---v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~----- 134 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDER--LSGGVG---ADGGLVFVGTEKGEVIALDAEDGKELWRAKLS----- 134 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCCC--cccceE---EcCCEEEEEcCCCEEEEEECCCCcEeeeeccC-----
Confidence 46888898999999999999998877654321 111222 24668888889999999999988764432211
Q ss_pred EecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCCe-----EEEEEcCCCCcEEEEEeCCCeEEE
Q 003822 546 TFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHI-----NVVKFSNHSPSIFATSSFDQDVKL 620 (793)
Q Consensus 546 ~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V-----~sv~fspdg~~~LaTgs~Dg~IrI 620 (793)
..+.+.-. -.++.+++++.+|.++.||.++|+.+..+.. ....+ .+.... + ..++.+..+|.+..
T Consensus 135 -----~~~~~~p~-v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~-~~~~~~~~~~~sp~~~-~--~~v~~~~~~g~v~a 204 (377)
T TIGR03300 135 -----SEVLSPPL-VANGLVVVRTNDGRLTALDAATGERLWTYSR-VTPALTLRGSASPVIA-D--GGVLVGFAGGKLVA 204 (377)
T ss_pred -----ceeecCCE-EECCEEEEECCCCeEEEEEcCCCceeeEEcc-CCCceeecCCCCCEEE-C--CEEEEECCCCEEEE
Confidence 11111101 1356778888899999999999999888762 22111 111121 2 35777888899999
Q ss_pred EECCCCCccceEEccCCCC---e---EEEEEec--CCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEee
Q 003822 621 WDLRQKPIQPCYTASSSKG---N---VMVCFSP--DDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYL 692 (793)
Q Consensus 621 WDlrt~~~~~~~~l~~~~~---~---vsv~fSp--dg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afsp 692 (793)
+|.++++..-........+ . ..+.-+| .+..+++++.+|.++.||..+|+.+..... .. ... ...
T Consensus 205 ld~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~---~~--~~~--p~~ 277 (377)
T TIGR03300 205 LDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDA---SS--YQG--PAV 277 (377)
T ss_pred EEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeecc---CC--ccC--ceE
Confidence 9998875322111111000 0 0000111 356788888899999999999987665541 11 111 123
Q ss_pred CCCeEEEEEeCCCcEEEEEEcCCCcEEE
Q 003822 693 NGRDYIVSGSCDEHVVRICCAQTGRRLR 720 (793)
Q Consensus 693 dg~~~L~Sgs~Dg~II~IWDv~tg~~l~ 720 (793)
.+. .++.++.||.+ ..+|..+|+.+.
T Consensus 278 ~~~-~vyv~~~~G~l-~~~d~~tG~~~W 303 (377)
T TIGR03300 278 DDN-RLYVTDADGVV-VALDRRSGSELW 303 (377)
T ss_pred eCC-EEEEECCCCeE-EEEECCCCcEEE
Confidence 445 68888899999 999999999887
No 262
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.81 E-value=1.2e-06 Score=99.82 Aligned_cols=218 Identities=14% Similarity=0.084 Sum_probs=129.0
Q ss_pred EEEEEeCCCCCE--E-EEEeCCC--eEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEc-CC----cEEEE
Q 003822 457 RQFEYHPSISCL--M-VFGTLDG--EIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSD-NG----SLKLY 526 (793)
Q Consensus 457 ~~vafsP~d~~~--L-asgs~DG--~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~-Dg----tV~vW 526 (793)
.+-+|+| |++. + ++...+| .|.+.++.+++...... ..+......|+ |+|+.|+..+. +| .+..|
T Consensus 188 ~sP~wSP-DG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~---~~g~~~~p~wS-PDG~~Laf~s~~~g~~di~~~~~ 262 (428)
T PRK01029 188 ITPTWMH-IGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILA---LQGNQLMPTFS-PRKKLLAFISDRYGNPDLFIQSF 262 (428)
T ss_pred ccceEcc-CCCceEEEEEEccCCCceEEEEECCCCCceEeec---CCCCccceEEC-CCCCEEEEEECCCCCcceeEEEe
Confidence 4558999 7764 2 2444443 57777888776544332 23445567898 78888776553 23 34446
Q ss_pred EcCCCCC-cccccccCCceeEecCCCCeEEEEEccCCCEEEEEEC-CCcEEEE--ECCC-CcEEEEEcccCCCCeEEEEE
Q 003822 527 DIRHMPP-SIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY-SKNIALY--DINS-GRRLQVFADMHKEHINVVKF 601 (793)
Q Consensus 527 Dl~~~~~-~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~-Dg~I~IW--Dl~t-g~~l~~~~~gh~~~V~sv~f 601 (793)
++..+.. ... .++...........|+|++..++..+. +|...+| ++.. +.....+. .+...+....|
T Consensus 263 ~~~~g~~g~~~-------~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt-~~~~~~~~p~w 334 (428)
T PRK01029 263 SLETGAIGKPR-------RLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLT-KKYRNSSCPAW 334 (428)
T ss_pred ecccCCCCcce-------EeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEec-cCCCCccceeE
Confidence 7665311 001 111111123356789999998887764 5654444 5542 33344454 24456778999
Q ss_pred cCCCCcEEEEEeC-C--CeEEEEECCCCCccceEEccCCCCeEEEEEecCCCEEEEEeC---CCeEEEEEcCCCcEEEEE
Q 003822 602 SNHSPSIFATSSF-D--QDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLVSAV---DNEVRQLLAVDGRVHLNF 675 (793)
Q Consensus 602 spdg~~~LaTgs~-D--g~IrIWDlrt~~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs~---Dg~I~IwDl~tg~~~~~l 675 (793)
+|+| +.|+..+. + ..|.+||+.+++...+.. +........|+|||++|+..+. ...|+++|+.+++.....
T Consensus 335 SPDG-~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~--~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt 411 (428)
T PRK01029 335 SPDG-KKIAFCSVIKGVRQICVYDLATGRDYQLTT--SPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIV 411 (428)
T ss_pred CCCC-CEEEEEEcCCCCcEEEEEECCCCCeEEccC--CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee
Confidence 9999 56655443 3 369999998875443322 2223335899999999876543 357889999887754333
Q ss_pred eeecCCCCCcEEEEEeeCC
Q 003822 676 GITATGSSQNYTRSYYLNG 694 (793)
Q Consensus 676 ~~~~~~~~~v~s~afspdg 694 (793)
. ........+|+|-.
T Consensus 412 ~----~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 412 I----GSGEKRFPSWGAFP 426 (428)
T ss_pred c----CCCcccCceecCCC
Confidence 2 22334456776643
No 263
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.81 E-value=1.1e-05 Score=86.02 Aligned_cols=259 Identities=12% Similarity=0.149 Sum_probs=164.7
Q ss_pred eEEEEEeCCCCCEEEEEeC---CCeEEEEECCC--CeEEE--EEeccCCCCCEEEEEEeeCCCCEEEEEE-cCCcEEEEE
Q 003822 456 PRQFEYHPSISCLMVFGTL---DGEIVVVNHEN--ENIVS--YIPSFGAMNSVLGLCWLKKYPSKLIAGS-DNGSLKLYD 527 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~---DG~I~VWd~~t--~~~i~--~l~~~~h~~~V~sv~fs~~~g~~Lasgs-~DgtV~vWD 527 (793)
++-++|+| +.+.|.++-. +|.|..|.++. |.... .....++ +-+.++.. +++++++++. .-|.|.++-
T Consensus 42 ptyl~~~~-~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~--~p~yvsvd-~~g~~vf~AnY~~g~v~v~p 117 (346)
T COG2706 42 PTYLAVNP-DQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGS--PPCYVSVD-EDGRFVFVANYHSGSVSVYP 117 (346)
T ss_pred CceEEECC-CCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCC--CCeEEEEC-CCCCEEEEEEccCceEEEEE
Confidence 78899999 8888887765 47788887764 54422 2222232 33667765 7888888886 458899999
Q ss_pred cCCCCCccc--ccccCCce--eEecCCCCeEEEEEccCCCEEEEEEC-CCcEEEEECCCCcEEEEEc--ccCCCCeEEEE
Q 003822 528 IRHMPPSIR--GMHYGAGT--VTFDEFDQLTSVHVNSMDELFLASGY-SKNIALYDINSGRRLQVFA--DMHKEHINVVK 600 (793)
Q Consensus 528 l~~~~~~~~--~~~~~~~~--~~~~~~~~V~sv~~s~~~~~lla~g~-Dg~I~IWDl~tg~~l~~~~--~gh~~~V~sv~ 600 (793)
++..-.... ....+.+. ..-+....+....+.|++.++++..- -..|.+|++..|+....-. -.-....+-|.
T Consensus 118 ~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~ 197 (346)
T COG2706 118 LQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIV 197 (346)
T ss_pred cccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEE
Confidence 976322111 11111110 01111122778888899989988874 5779999999776432211 02445678899
Q ss_pred EcCCCCcEEEEEeCCCeEEEEECCCC--CccceE---E----ccCCCCeEEEEEecCCCEEEEEeC-CCeEEEEEcCCC-
Q 003822 601 FSNHSPSIFATSSFDQDVKLWDLRQK--PIQPCY---T----ASSSKGNVMVCFSPDDHYLLVSAV-DNEVRQLLAVDG- 669 (793)
Q Consensus 601 fspdg~~~LaTgs~Dg~IrIWDlrt~--~~~~~~---~----l~~~~~~vsv~fSpdg~~Lasgs~-Dg~I~IwDl~tg- 669 (793)
|+|++....+++--+++|-+|..... +...+. + +.+..+.-.+..+|||++|.++.. ...|.+|.+...
T Consensus 198 FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~ 277 (346)
T COG2706 198 FHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDG 277 (346)
T ss_pred EcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCC
Confidence 99999433444555999999998873 222221 1 223333445999999999999874 457888876532
Q ss_pred cEEEEEeeecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEc--CCCcEE
Q 003822 670 RVHLNFGITATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCA--QTGRRL 719 (793)
Q Consensus 670 ~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv--~tg~~l 719 (793)
..+......+.+........+++.|+ +|++++.++.-|.+|.. .||++-
T Consensus 278 g~L~~~~~~~teg~~PR~F~i~~~g~-~Liaa~q~sd~i~vf~~d~~TG~L~ 328 (346)
T COG2706 278 GKLELVGITPTEGQFPRDFNINPSGR-FLIAANQKSDNITVFERDKETGRLT 328 (346)
T ss_pred CEEEEEEEeccCCcCCccceeCCCCC-EEEEEccCCCcEEEEEEcCCCceEE
Confidence 33445555556666688889999999 77777776643388855 455543
No 264
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.79 E-value=1.3e-05 Score=85.45 Aligned_cols=229 Identities=15% Similarity=0.240 Sum_probs=149.6
Q ss_pred CCeEEEEECCCCe-EEEEEeccCCCCCEEEEEEeeCCCCEEEEEEc---CCcEEEEEcCC--CCCcccccccCCceeEec
Q 003822 475 DGEIVVVNHENEN-IVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSD---NGSLKLYDIRH--MPPSIRGMHYGAGTVTFD 548 (793)
Q Consensus 475 DG~I~VWd~~t~~-~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~---DgtV~vWDl~~--~~~~~~~~~~~~~~~~~~ 548 (793)
++-|++|++++.. .+..+....+.+.++-++|+ ++.+.|.++.. +|.|-.|.++. +........ ..
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~-~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~-------~~ 86 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVN-PDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQ-------TL 86 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEEC-CCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeecc-------cc
Confidence 4569999987322 22222333567788899997 67878888754 47788888875 332211110 01
Q ss_pred CCCCeEEEEEccCCCEEEEEEC-CCcEEEEECCC-CcE---EEEEcccCCCC----------eEEEEEcCCCCcEEEEEe
Q 003822 549 EFDQLTSVHVNSMDELFLASGY-SKNIALYDINS-GRR---LQVFADMHKEH----------INVVKFSNHSPSIFATSS 613 (793)
Q Consensus 549 ~~~~V~sv~~s~~~~~lla~g~-Dg~I~IWDl~t-g~~---l~~~~~gh~~~----------V~sv~fspdg~~~LaTgs 613 (793)
...+.+.+++++++..++++.. .|.|.++-++. |.. +..+. |.+. +....+.|++ +++++..
T Consensus 87 ~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~--h~g~~p~~rQ~~~h~H~a~~tP~~-~~l~v~D 163 (346)
T COG2706 87 PGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVK--HTGSGPHERQESPHVHSANFTPDG-RYLVVPD 163 (346)
T ss_pred CCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeee--cCCCCCCccccCCccceeeeCCCC-CEEEEee
Confidence 1133478899888888888885 69999999976 432 23333 5554 8889999999 7777765
Q ss_pred C-CCeEEEEECCCCCccce--EEccCCCCeEEEEEecCCCEEEEEeC-CCeEEEEEcCC--CcE--EEEEee---ecCCC
Q 003822 614 F-DQDVKLWDLRQKPIQPC--YTASSSKGNVMVCFSPDDHYLLVSAV-DNEVRQLLAVD--GRV--HLNFGI---TATGS 682 (793)
Q Consensus 614 ~-Dg~IrIWDlrt~~~~~~--~~l~~~~~~vsv~fSpdg~~Lasgs~-Dg~I~IwDl~t--g~~--~~~l~~---~~~~~ 682 (793)
- --.|.+|++..++..+. ..++...++..+.|+|+|++..+.+. +++|.+|.... |+. ++.+.. .-.+.
T Consensus 164 LG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~ 243 (346)
T COG2706 164 LGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGT 243 (346)
T ss_pred cCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCC
Confidence 4 23699999987654332 22345556777999999999988775 89999999877 332 222211 12344
Q ss_pred CCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCC
Q 003822 683 SQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQT 715 (793)
Q Consensus 683 ~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~t 715 (793)
.....+..++||+ +|.+...--..|.+|.+..
T Consensus 244 ~~~aaIhis~dGr-FLYasNRg~dsI~~f~V~~ 275 (346)
T COG2706 244 NWAAAIHISPDGR-FLYASNRGHDSIAVFSVDP 275 (346)
T ss_pred CceeEEEECCCCC-EEEEecCCCCeEEEEEEcC
Confidence 5566778899999 7766543322337776643
No 265
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.78 E-value=4.9e-06 Score=104.32 Aligned_cols=267 Identities=12% Similarity=0.094 Sum_probs=161.4
Q ss_pred EEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcccccccCC----ceeEecCCCCeEEEEEccCCCEEEEEE-CCCcEEE
Q 003822 502 LGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGA----GTVTFDEFDQLTSVHVNSMDELFLASG-YSKNIAL 576 (793)
Q Consensus 502 ~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~~~~~~~~----~~~~~~~~~~V~sv~~s~~~~~lla~g-~Dg~I~I 576 (793)
..+++.+.++..+++-+.++.|++||............+.. +...-.......++++.++++.++++. ..+.|++
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~ 650 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALRE 650 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEE
Confidence 35666544566777777888999999865321111100000 011111224568899988888766665 4678999
Q ss_pred EECCCCcEEEEEcc-cC---------------CCCeEEEEEcCCCCcEEEEEeCCCeEEEEECCCCCccceEEcc-----
Q 003822 577 YDINSGRRLQVFAD-MH---------------KEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTAS----- 635 (793)
Q Consensus 577 WDl~tg~~l~~~~~-gh---------------~~~V~sv~fspdg~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~----- 635 (793)
+|..++. +.++.. +. -...+.++++|+++.++++.+.++.|++||..++... .+...
T Consensus 651 id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~ 728 (1057)
T PLN02919 651 IDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERN 728 (1057)
T ss_pred EecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCcccc
Confidence 9988764 333321 00 1234689999965478888888999999999776322 11111
Q ss_pred --C-------CCCeEEEEEecCCCEEEEE-eCCCeEEEEEcCCCcEEEEEeeec------------------CCCCCcEE
Q 003822 636 --S-------SKGNVMVCFSPDDHYLLVS-AVDNEVRQLLAVDGRVHLNFGITA------------------TGSSQNYT 687 (793)
Q Consensus 636 --~-------~~~~vsv~fSpdg~~Lasg-s~Dg~I~IwDl~tg~~~~~l~~~~------------------~~~~~v~s 687 (793)
+ -..+..++++|+|++|+++ +.++.|++||+.++.......... ........
T Consensus 729 ~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~G 808 (1057)
T PLN02919 729 LNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLG 808 (1057)
T ss_pred CCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCce
Confidence 0 1123358999999866555 457899999998775321110000 00113457
Q ss_pred EEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCCCCccceeeeccCCccccCCccEEEEEEcCCCCceeeEee
Q 003822 688 RSYYLNGRDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKSEIVKVN 767 (793)
Q Consensus 688 ~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~~~~iv~~~ 767 (793)
++++++|. ++++-+.+++| ++||..++.... +.|... .-+. .|....+.-....+++++|++ ..++
T Consensus 809 vavd~dG~-LYVADs~N~rI-rviD~~tg~v~t---iaG~G~--~G~~---dG~~~~a~l~~P~GIavd~dG-~lyV--- 874 (1057)
T PLN02919 809 VLCAKDGQ-IYVADSYNHKI-KKLDPATKRVTT---LAGTGK--AGFK---DGKALKAQLSEPAGLALGENG-RLFV--- 874 (1057)
T ss_pred eeEeCCCc-EEEEECCCCEE-EEEECCCCeEEE---EeccCC--cCCC---CCcccccccCCceEEEEeCCC-CEEE---
Confidence 88999998 77888888899 999998886653 333220 0010 011111111246788999975 3333
Q ss_pred EEEeCCCcEEEEcCCCCC
Q 003822 768 LLASTDHCDKECSHGQHS 785 (793)
Q Consensus 768 ltaS~Dg~VkvW~~~~~~ 785 (793)
+-+.++.|++|+.....
T Consensus 875 -aDt~Nn~Irvid~~~~~ 891 (1057)
T PLN02919 875 -ADTNNSLIRYLDLNKGE 891 (1057)
T ss_pred -EECCCCEEEEEECCCCc
Confidence 56788999999986653
No 266
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.78 E-value=9.2e-07 Score=99.80 Aligned_cols=246 Identities=12% Similarity=0.080 Sum_probs=164.7
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeE-------------EEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCc
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENI-------------VSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGS 522 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~-------------i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~Dgt 522 (793)
..|++|+. ...++|+|+.||.++|..+.+... ...-.+.||.+.|.-+.|. .+.+.|-|+..+|.
T Consensus 17 L~c~~WNk-e~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWN-e~~QKLTtSDt~Gl 94 (1189)
T KOG2041|consen 17 LHCAEWNK-ESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWN-ENNQKLTTSDTSGL 94 (1189)
T ss_pred EEEEEEcc-cCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEec-cccccccccCCCce
Confidence 68999999 788999999999999998764211 1111234999999999997 66778999999999
Q ss_pred EEEEEcCCCCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEE-EEEcccCCCCeEEEEE
Q 003822 523 LKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRL-QVFADMHKEHINVVKF 601 (793)
Q Consensus 523 V~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l-~~~~~gh~~~V~sv~f 601 (793)
|.+|-+-.+.-...-.. -...+.|.+++|+.+|..+..+-.||.|.+=.+...+.- +.++ ......+.|
T Consensus 95 IiVWmlykgsW~EEMiN-------nRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLk---g~~l~hv~w 164 (1189)
T KOG2041|consen 95 IIVWMLYKGSWCEEMIN-------NRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELK---GQLLAHVLW 164 (1189)
T ss_pred EEEEeeecccHHHHHhh-------CcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcc---hheccceee
Confidence 99999987654211111 122355889999999999888888888887666532211 1122 122346889
Q ss_pred cCCCCcEEEEEeCCCeEEEEECCCCCc-----cceEEccCCC-----CeEEEEEe--------cCCCEEEEEeCCCeEEE
Q 003822 602 SNHSPSIFATSSFDQDVKLWDLRQKPI-----QPCYTASSSK-----GNVMVCFS--------PDDHYLLVSAVDNEVRQ 663 (793)
Q Consensus 602 spdg~~~LaTgs~Dg~IrIWDlrt~~~-----~~~~~l~~~~-----~~vsv~fS--------pdg~~Lasgs~Dg~I~I 663 (793)
++|. ..++.+-..|.+.+||....-. .+.....+.. .+-.+.|. |+...++++...|.+.+
T Consensus 165 s~D~-~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~Qi 243 (1189)
T KOG2041|consen 165 SEDL-EQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQI 243 (1189)
T ss_pred cccH-HHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehh
Confidence 9998 6777778889999999865311 1111111100 11124442 57888999999999988
Q ss_pred EEcCCCcEEEEEeeecCCCCCcEEEEEeeCCCeEEEEEeCCC--------cEEEEEEcCCCcEEE
Q 003822 664 LLAVDGRVHLNFGITATGSSQNYTRSYYLNGRDYIVSGSCDE--------HVVRICCAQTGRRLR 720 (793)
Q Consensus 664 wDl~tg~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg--------~II~IWDv~tg~~l~ 720 (793)
..-.+......+. ....++...|+++|. .|+.+|.|. +.|.++ ..-|+.++
T Consensus 244 MR~eND~~Pvv~d----tgm~~vgakWnh~G~-vLAvcG~~~da~~~~d~n~v~Fy-sp~G~i~g 302 (1189)
T KOG2041|consen 244 MRSENDPEPVVVD----TGMKIVGAKWNHNGA-VLAVCGNDSDADEPTDSNKVHFY-SPYGHIVG 302 (1189)
T ss_pred hhhcCCCCCeEEe----cccEeecceecCCCc-EEEEccCcccccCccccceEEEe-ccchhheE
Confidence 7655544333343 235678889999999 888877643 222554 34566666
No 267
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.77 E-value=1.5e-07 Score=96.84 Aligned_cols=202 Identities=17% Similarity=0.178 Sum_probs=134.3
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCC-c
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPP-S 534 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~-~ 534 (793)
..++.|++ .+..++++..+|.+.+-+.........-....|.-.++...|+..+++.+++|+.|+.+..||++.... .
T Consensus 124 ~lslD~~~-~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i 202 (339)
T KOG0280|consen 124 ALSLDIST-SGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFI 202 (339)
T ss_pred eeEEEeec-cCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCccee
Confidence 35788999 778899999999999666555554442333489999999999888889999999999999999994332 1
Q ss_pred ccccccCCceeEecCCCCeEEEEEccCCC-EEEEEECCCcEEEEECC-CCcEEEEEcccCCCCeEEEEEcCCCCc-EEEE
Q 003822 535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDE-LFLASGYSKNIALYDIN-SGRRLQVFADMHKEHINVVKFSNHSPS-IFAT 611 (793)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~V~sv~~s~~~~-~lla~g~Dg~I~IWDl~-tg~~l~~~~~gh~~~V~sv~fspdg~~-~LaT 611 (793)
.. ....|...|.+|.-+|+.+ ++++|++|-.|++||.+ -++++..-. -.+.|+.+.++|.-.. ++++
T Consensus 203 ~~--------n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~--v~GGVWRi~~~p~~~~~lL~~ 272 (339)
T KOG0280|consen 203 WH--------NSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK--VGGGVWRIKHHPEIFHRLLAA 272 (339)
T ss_pred ee--------cceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc--cccceEEEEecchhhhHHHHH
Confidence 11 1224557789998887765 55555689999999999 478877665 5689999999997532 3444
Q ss_pred EeCCCeEEEEECCCCCccceEEccCCCCeEEEEEecC----CCEEEEEe-CCCeEE-EEEcCCC
Q 003822 612 SSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPD----DHYLLVSA-VDNEVR-QLLAVDG 669 (793)
Q Consensus 612 gs~Dg~IrIWDlrt~~~~~~~~l~~~~~~vsv~fSpd----g~~Lasgs-~Dg~I~-IwDl~tg 669 (793)
+-..| .+|-+...+.......+..+...-++++-.| ...+|+++ .|+.++ +|-.-++
T Consensus 273 CMh~G-~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 273 CMHNG-AKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred HHhcC-ceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccC
Confidence 44444 6777776653331111112222223444332 34567754 466644 6654443
No 268
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.74 E-value=7.7e-08 Score=105.33 Aligned_cols=282 Identities=12% Similarity=0.089 Sum_probs=168.4
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCC-----CeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCC
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHEN-----ENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRH 530 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t-----~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~ 530 (793)
|++++--. +.+-+++++.|.+|++|.+.. +.....+....|+.+|.++.|. .+-+++++ .||-|++||.--
T Consensus 738 iRai~Aid-NENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL-~~lr~i~S--cD~giHlWDPFi 813 (1034)
T KOG4190|consen 738 IRAIAAID-NENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFL-ADLRSIAS--CDGGIHLWDPFI 813 (1034)
T ss_pred hHHHHhcc-cccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeee-eccceeee--ccCcceeecccc
Confidence 44444333 567799999999999999853 2233456666999999999997 55555555 488999999766
Q ss_pred CCCcccccccCCceeEecCCCCeEEEEEccC-CC-EEEEEE-CCCcEEEEECCCCcEEEEEcc----cCCCCeEEEEEcC
Q 003822 531 MPPSIRGMHYGAGTVTFDEFDQLTSVHVNSM-DE-LFLASG-YSKNIALYDINSGRRLQVFAD----MHKEHINVVKFSN 603 (793)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~-~~-~lla~g-~Dg~I~IWDl~tg~~l~~~~~----gh~~~V~sv~fsp 603 (793)
++......... ..+.+..+..-+. +. .+++++ ...+|+++|.+.+.....++- +..+-+++++..+
T Consensus 814 gr~Laq~~dap-------k~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~ 886 (1034)
T KOG4190|consen 814 GRLLAQMEDAP-------KEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVAD 886 (1034)
T ss_pred cchhHhhhcCc-------ccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEecc
Confidence 55422111100 1122222222233 44 444443 479999999999877665541 3456788999999
Q ss_pred CCCcEEEEEeCCCeEEEEECCCCCccceEEccCCCCeEEEEEecCCCEEEEEeCCCeEEE-EEcCCCcEEEEEeeecCCC
Q 003822 604 HSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLVSAVDNEVRQ-LLAVDGRVHLNFGITATGS 682 (793)
Q Consensus 604 dg~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs~Dg~I~I-wDl~tg~~~~~l~~~~~~~ 682 (793)
.| +.++.+-..|.|.+.|.|+++....+. ...-..----.|..+.++....|.++.+ |...+|..+.+.+-.+...
T Consensus 887 ~G-N~lAa~LSnGci~~LDaR~G~vINswr--pmecdllqlaapsdq~L~~saldHslaVnWhaldgimh~q~kpppepa 963 (1034)
T KOG4190|consen 887 KG-NKLAAALSNGCIAILDARNGKVINSWR--PMECDLLQLAAPSDQALAQSALDHSLAVNWHALDGIMHLQDKPPPEPA 963 (1034)
T ss_pred Cc-chhhHHhcCCcEEEEecCCCceeccCC--cccchhhhhcCchhHHHHhhcccceeEeeehhcCCeeeeccCCCCcch
Confidence 99 899999999999999999985322111 1111111122466777888888999998 9988887765554222111
Q ss_pred CCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCCCCccceeeeccCCccccCCccEEEEEEcCCCCce
Q 003822 683 SQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKSE 762 (793)
Q Consensus 683 ~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~~~~ 762 (793)
... ..-|. -++++.....+ .||-- .++.- ...-++.++.+.|+| ..++++--|-..
T Consensus 964 hfl-----qsvgp-SLV~a~~Gn~l-gVYad-~a~~h-----------a~stitKiR~d~f~G---~lTala~LPLN~-- 1019 (1034)
T KOG4190|consen 964 HFL-----QSVGP-SLVTAQNGNIL-GVYAD-SAELH-----------AESTITKIRPDEFPG---TLTALAPLPLNC-- 1019 (1034)
T ss_pred hhh-----hccCc-eeEEeccCcEE-EEEec-chhhh-----------hhhhhccccccccCC---ccceeeeccccc--
Confidence 111 11233 45555443333 77621 11111 111344455454443 667777777432
Q ss_pred eeEeeEEEeCCCcEEE
Q 003822 763 IVKVNLLASTDHCDKE 778 (793)
Q Consensus 763 iv~~~ltaS~Dg~Vkv 778 (793)
..+.|+..|.|.+
T Consensus 1020 ---afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 1020 ---AFLAGNEHGAIAL 1032 (1034)
T ss_pred ---hhhccCCCCceee
Confidence 2234666777765
No 269
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.73 E-value=3.1e-08 Score=108.37 Aligned_cols=215 Identities=15% Similarity=0.142 Sum_probs=146.2
Q ss_pred ccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcccccccCCceeEe-cCCCCeEEEEEccCCCEEEEEECCC
Q 003822 494 SFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTF-DEFDQLTSVHVNSMDELFLASGYSK 572 (793)
Q Consensus 494 ~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~~~~~~~~~~~~~-~~~~~V~sv~~s~~~~~lla~g~Dg 572 (793)
..||+..|..++-. .+.+-+++++.|++|++|.++...-.. .......++ .|..+|.++.|-.+...+ ++.||
T Consensus 731 f~GH~~~iRai~Ai-dNENSFiSASkDKTVKLWSik~EgD~~---~tsaCQfTY~aHkk~i~~igfL~~lr~i--~ScD~ 804 (1034)
T KOG4190|consen 731 FTGHQEKIRAIAAI-DNENSFISASKDKTVKLWSIKPEGDEI---GTSACQFTYQAHKKPIHDIGFLADLRSI--ASCDG 804 (1034)
T ss_pred ccCcHHHhHHHHhc-ccccceeeccCCceEEEEEeccccCcc---ccceeeeEhhhccCcccceeeeecccee--eeccC
Confidence 45899999988865 577889999999999999997632211 111222333 466789999885554444 45689
Q ss_pred cEEEEECCCCcEEEEEcc-cCCCCeEEEEEcC--CCCcEEEEEeCCCeEEEEECCCCCccceEEcc---CCCCeE-EEEE
Q 003822 573 NIALYDINSGRRLQVFAD-MHKEHINVVKFSN--HSPSIFATSSFDQDVKLWDLRQKPIQPCYTAS---SSKGNV-MVCF 645 (793)
Q Consensus 573 ~I~IWDl~tg~~l~~~~~-gh~~~V~sv~fsp--dg~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~---~~~~~v-sv~f 645 (793)
.|.+||.--|+++..+.+ ...+.+..+..-+ +.+-+++.++...+|+++|.|........... +....+ +++.
T Consensus 805 giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaV 884 (1034)
T KOG4190|consen 805 GIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAV 884 (1034)
T ss_pred cceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEe
Confidence 999999988887765542 1223333333333 33234445578899999999987655544433 332333 5899
Q ss_pred ecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEE-EEcCCCcEEE
Q 003822 646 SPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRI-CCAQTGRRLR 720 (793)
Q Consensus 646 Spdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~I-WDv~tg~~l~ 720 (793)
.|.|+++++|-.+|.|.+.|.++|+.+..+. ........++ .|.++ .++....|.++ .| |..-.|....
T Consensus 885 a~~GN~lAa~LSnGci~~LDaR~G~vINswr---pmecdllqla-apsdq-~L~~saldHsl-aVnWhaldgimh~ 954 (1034)
T KOG4190|consen 885 ADKGNKLAAALSNGCIAILDARNGKVINSWR---PMECDLLQLA-APSDQ-ALAQSALDHSL-AVNWHALDGIMHL 954 (1034)
T ss_pred ccCcchhhHHhcCCcEEEEecCCCceeccCC---cccchhhhhc-CchhH-HHHhhccccee-EeeehhcCCeeee
Confidence 9999999999999999999999999877664 2222222232 35555 78888888888 88 9887776655
No 270
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.73 E-value=6.5e-07 Score=99.98 Aligned_cols=161 Identities=14% Similarity=0.170 Sum_probs=125.5
Q ss_pred cCCCEEEEEECCCcEEEEECCCCcEEEEEccc--CCCCeEEEEEc------C-------------CCCcEEEEEeCCCeE
Q 003822 560 SMDELFLASGYSKNIALYDINSGRRLQVFADM--HKEHINVVKFS------N-------------HSPSIFATSSFDQDV 618 (793)
Q Consensus 560 ~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~g--h~~~V~sv~fs------p-------------dg~~~LaTgs~Dg~I 618 (793)
|...+++....||.+++||...++....|... -.+..++..|. | .+...++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 34566777778999999999999887777521 12333344442 2 122578888899999
Q ss_pred EEEECCCCCccceEEccCCCCeEE-EEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCCCeE
Q 003822 619 KLWDLRQKPIQPCYTASSSKGNVM-VCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNGRDY 697 (793)
Q Consensus 619 rIWDlrt~~~~~~~~l~~~~~~vs-v~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg~~~ 697 (793)
.+|+...++....+....|.+.+. +.++.+-..|.+++.|+.+..|+..+++.++.+. .....+.+++++|||. .
T Consensus 83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~---~~~~~~~sl~is~D~~-~ 158 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWK---EQKPLVSSLCISPDGK-I 158 (541)
T ss_pred EEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeec---cCCCccceEEEcCCCC-E
Confidence 999999987766666566766664 7888888999999999999999999999888776 4566788999999998 8
Q ss_pred EEEEeCCCcEEEEEEcCCCcEEEeeeecCCCC
Q 003822 698 IVSGSCDEHVVRICCAQTGRRLRDISLEGKGS 729 (793)
Q Consensus 698 L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~~ 729 (793)
+++|+ +.| ++||+++++.+. ++.||.+
T Consensus 159 l~~as--~~i-k~~~~~~kevv~--~ftgh~s 185 (541)
T KOG4547|consen 159 LLTAS--RQI-KVLDIETKEVVI--TFTGHGS 185 (541)
T ss_pred EEecc--ceE-EEEEccCceEEE--EecCCCc
Confidence 88776 457 999999999999 8888873
No 271
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.72 E-value=2.5e-07 Score=95.58 Aligned_cols=251 Identities=16% Similarity=0.239 Sum_probs=162.1
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCe-----EEEEEeccCC------------CCCEEEEEEeeCCC-CEEEEE
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENEN-----IVSYIPSFGA------------MNSVLGLCWLKKYP-SKLIAG 517 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~-----~i~~l~~~~h------------~~~V~sv~fs~~~g-~~Lasg 517 (793)
|+++.|.- .|.+|++|...|.|.+|.-+... ....++ +| ...|..+.|..+.+ +.++..
T Consensus 29 ItaVefd~-tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQ--she~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 29 ITAVEFDE-TGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQ--SHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred eeEEEecc-ccceEeecCCCceEEEeecccccccchhhhhhhc--ccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 89999999 88999999999999999865432 111122 33 34688899985444 467777
Q ss_pred EcCCcEEEEEcCCCCCccc--------------------------ccccCCcee--------EecCCCCeEEEEEccCCC
Q 003822 518 SDNGSLKLYDIRHMPPSIR--------------------------GMHYGAGTV--------TFDEFDQLTSVHVNSMDE 563 (793)
Q Consensus 518 s~DgtV~vWDl~~~~~~~~--------------------------~~~~~~~~~--------~~~~~~~V~sv~~s~~~~ 563 (793)
+.|.+|++|.+......+. .+..|...+ .-.|.-.+.++.++++..
T Consensus 106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~e 185 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKE 185 (460)
T ss_pred cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchh
Confidence 7899999999875421110 011111111 113445588899976666
Q ss_pred EEEEEECCCcEEEEECCCCc---EEEEEcccCC-----CCeEEEEEcCCCCcEEEEEeCCCeEEEEECCCCC----ccce
Q 003822 564 LFLASGYSKNIALYDINSGR---RLQVFADMHK-----EHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKP----IQPC 631 (793)
Q Consensus 564 ~lla~g~Dg~I~IWDl~tg~---~l~~~~~gh~-----~~V~sv~fspdg~~~LaTgs~Dg~IrIWDlrt~~----~~~~ 631 (793)
.++ ++.|=.|.+|++.-.. .+..++ +|. .-|++..|+|...+++.-++..|.|++-|+|... ...+
T Consensus 186 t~l-SaDdLrINLWnl~i~D~sFnIVDiK-P~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~kl 263 (460)
T COG5170 186 TLL-SADDLRINLWNLEIIDGSFNIVDIK-PHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKL 263 (460)
T ss_pred eee-eccceeeeeccccccCCceEEEecc-CccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhh
Confidence 555 4567889999987432 233333 343 4678999999877888888899999999999531 0111
Q ss_pred EE--ccC--------CCCeEE-EEEecCCCEEEEEeCCCeEEEEEcCCCc-EEEEEeeecC---------CCC---CcEE
Q 003822 632 YT--ASS--------SKGNVM-VCFSPDDHYLLVSAVDNEVRQLLAVDGR-VHLNFGITAT---------GSS---QNYT 687 (793)
Q Consensus 632 ~~--l~~--------~~~~vs-v~fSpdg~~Lasgs~Dg~I~IwDl~tg~-~~~~l~~~~~---------~~~---~v~s 687 (793)
+. +.+ -...++ +.|+++|++|++-+. .++++||.+..+ ++.++..+.. ... .-..
T Consensus 264 fe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFe 342 (460)
T COG5170 264 FELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFE 342 (460)
T ss_pred hhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEE
Confidence 11 111 111233 899999999998774 689999988653 4455432111 011 2235
Q ss_pred EEEeeCCCeEEEEEeCCCcEEEEEEcC
Q 003822 688 RSYYLNGRDYIVSGSCDEHVVRICCAQ 714 (793)
Q Consensus 688 ~afspdg~~~L~Sgs~Dg~II~IWDv~ 714 (793)
+.|+.|+. .+++|+..... -++-+.
T Consensus 343 isfSgd~~-~v~sgsy~NNf-giyp~~ 367 (460)
T COG5170 343 ISFSGDDK-HVLSGSYSNNF-GIYPTD 367 (460)
T ss_pred EEecCCcc-cccccccccce-eeeccc
Confidence 67888887 88899888777 777543
No 272
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.72 E-value=4.6e-07 Score=95.13 Aligned_cols=194 Identities=11% Similarity=0.155 Sum_probs=135.1
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECC----CCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCC
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHE----NENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHM 531 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~----t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~ 531 (793)
++++++++ +...|++|-..|++.-+.+. +....+... .|...|..+-|+ ....++++.+.|..+.---.+.+
T Consensus 71 ~~~~~y~~-e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~--~h~~~v~~~if~-~~~e~V~s~~~dk~~~~hc~e~~ 146 (404)
T KOG1409|consen 71 CSAMEYVS-ESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYL--AHQARVSAIVFS-LTHEWVLSTGKDKQFAWHCTESG 146 (404)
T ss_pred ceEeeeec-cceEEEEEEecceEEEEEhhhhhhhcchhhhhh--hhhcceeeEEec-CCceeEEEeccccceEEEeeccC
Confidence 78999999 88899999999999988763 222333333 799999999987 66788999999987754444444
Q ss_pred CCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEEC--CCCcEEEEEcccCCCCeEEEEEcCCCCcEE
Q 003822 532 PPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDI--NSGRRLQVFADMHKEHINVVKFSNHSPSIF 609 (793)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl--~tg~~l~~~~~gh~~~V~sv~fspdg~~~L 609 (793)
...- ...+... ..++.+.- .+...|-..|.|.+-.+ ..-.++.++. +|.+.+++++|.|.. .++
T Consensus 147 ~~lg--------~Y~~~~~--~t~~~~d~--~~~fvGd~~gqvt~lr~~~~~~~~i~~~~-~h~~~~~~l~Wd~~~-~~L 212 (404)
T KOG1409|consen 147 NRLG--------GYNFETP--ASALQFDA--LYAFVGDHSGQITMLKLEQNGCQLITTFN-GHTGEVTCLKWDPGQ-RLL 212 (404)
T ss_pred Cccc--------ceEeecc--CCCCceee--EEEEecccccceEEEEEeecCCceEEEEc-CcccceEEEEEcCCC-cEE
Confidence 3310 1111100 11111100 12233334566555444 3456778888 799999999999987 899
Q ss_pred EEEeCCCeEEEEECCCCCccceEEccCCCCeEE-EEEecCCCEEEEEeCCCeEEEEEcCC
Q 003822 610 ATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVM-VCFSPDDHYLLVSAVDNEVRQLLAVD 668 (793)
Q Consensus 610 aTgs~Dg~IrIWDlrt~~~~~~~~l~~~~~~vs-v~fSpdg~~Lasgs~Dg~I~IwDl~t 668 (793)
.+|..|..+.+||+-..+. ..+.+.+|...+. +.+.+--+.+.+++.||.|.+|+...
T Consensus 213 fSg~~d~~vi~wdigg~~g-~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 213 FSGASDHSVIMWDIGGRKG-TAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred EeccccCceEEEeccCCcc-eeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccc
Confidence 9999999999999976543 3455666666654 77777788899999999999999764
No 273
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.68 E-value=3.9e-06 Score=85.65 Aligned_cols=246 Identities=13% Similarity=0.051 Sum_probs=156.5
Q ss_pred EEEEeCC----CCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCC
Q 003822 458 QFEYHPS----ISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPP 533 (793)
Q Consensus 458 ~vafsP~----d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~ 533 (793)
.+.|-|. ...+||.|+..|...+|...+.+....+- ..|...|+-+.=.-.....+..++.|.++++.+++.+..
T Consensus 72 g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~c-d~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~ 150 (344)
T KOG4532|consen 72 GMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQC-DVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSN 150 (344)
T ss_pred cccccchHhhccccEEEeccccceeeeecccCcccceeee-cccccchhhhhhhcccccceeeccCCcceeEEEEecCcc
Confidence 3555551 34689999999999999998765433322 133333322210001123467788899999999886543
Q ss_pred cccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCC-CcE-EEEEcccCCCCeEEEEEcCCCCcEEEE
Q 003822 534 SIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINS-GRR-LQVFADMHKEHINVVKFSNHSPSIFAT 611 (793)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~t-g~~-l~~~~~gh~~~V~sv~fspdg~~~LaT 611 (793)
... +.+.. -.+.++++++++...++.|+...|..|.+.. ++. +.+.....++.-.+..|+... ..+|+
T Consensus 151 ~~~--------~h~~~-~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~-~~FAv 220 (344)
T KOG4532|consen 151 KFA--------VHNQN-LTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSEND-LQFAV 220 (344)
T ss_pred cce--------eeccc-cceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCc-ceEEE
Confidence 111 11111 2278889988899999999999999999875 333 332322355566788999887 89999
Q ss_pred EeCCCeEEEEECCCCCcc---ceEEccCCCCeEE-EEEecCCC--EEEEEeCCCeEEEEEcCCCcEEEEEeeecCC----
Q 003822 612 SSFDQDVKLWDLRQKPIQ---PCYTASSSKGNVM-VCFSPDDH--YLLVSAVDNEVRQLLAVDGRVHLNFGITATG---- 681 (793)
Q Consensus 612 gs~Dg~IrIWDlrt~~~~---~~~~l~~~~~~vs-v~fSpdg~--~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~---- 681 (793)
++.||++.|||+|..... ...+-+.|.+.+. +.|+|.|. .|+..-.-+.+.+.|+++++..+.+.+....
T Consensus 221 ~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~ 300 (344)
T KOG4532|consen 221 VFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKH 300 (344)
T ss_pred EecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccc
Confidence 999999999999974321 1223345677775 89998663 4555555678999999999877666543221
Q ss_pred C-CCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCc
Q 003822 682 S-SQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGR 717 (793)
Q Consensus 682 ~-~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~ 717 (793)
. ..+....|+.++. -+.+.+++ .+ .=|++.+..
T Consensus 301 ~tq~ifgt~f~~~n~-s~~v~~e~-~~-ae~ni~srs 334 (344)
T KOG4532|consen 301 NTQHIFGTNFNNENE-SNDVKNEL-QG-AEYNILSRS 334 (344)
T ss_pred cccccccccccCCCc-ccccccch-hh-heeeccccc
Confidence 1 2355666666665 44444443 23 455554443
No 274
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.67 E-value=7.8e-07 Score=93.34 Aligned_cols=223 Identities=16% Similarity=0.215 Sum_probs=144.1
Q ss_pred CCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCC----cccccccCCcee----EecCCCCeEEEEEccCC--CEEEE
Q 003822 498 MNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPP----SIRGMHYGAGTV----TFDEFDQLTSVHVNSMD--ELFLA 567 (793)
Q Consensus 498 ~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~----~~~~~~~~~~~~----~~~~~~~V~sv~~s~~~--~~lla 567 (793)
.+-|.+|.|. ..|++|++|..+|.|.++.-+.... .......|.... .......|..+.|.+++ ..++.
T Consensus 25 adiis~vef~-~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl 103 (433)
T KOG1354|consen 25 ADIISAVEFD-HYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL 103 (433)
T ss_pred hcceeeEEee-cccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence 3568889986 8999999999999999987554332 111111111111 12223568888998776 46888
Q ss_pred EECCCcEEEEECCCCc-----------------------------------EEEEEcccCCCCeEEEEEcCCCCcEEEEE
Q 003822 568 SGYSKNIALYDINSGR-----------------------------------RLQVFADMHKEHINVVKFSNHSPSIFATS 612 (793)
Q Consensus 568 ~g~Dg~I~IWDl~tg~-----------------------------------~l~~~~~gh~~~V~sv~fspdg~~~LaTg 612 (793)
++.|.+|++|-+.... +.+.+..+|.-.|+++.++.|+ ..++++
T Consensus 104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~-Et~lSA 182 (433)
T KOG1354|consen 104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDK-ETFLSA 182 (433)
T ss_pred ecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCcc-ceEeec
Confidence 8999999999876321 1223345788999999999998 566654
Q ss_pred eCCCeEEEEECCCC-CccceEEccCCC-----Ce-EEEEEecC-CCEEEEEeCCCeEEEEEcCCCcEE----EEEeee--
Q 003822 613 SFDQDVKLWDLRQK-PIQPCYTASSSK-----GN-VMVCFSPD-DHYLLVSAVDNEVRQLLAVDGRVH----LNFGIT-- 678 (793)
Q Consensus 613 s~Dg~IrIWDlrt~-~~~~~~~l~~~~-----~~-vsv~fSpd-g~~Lasgs~Dg~I~IwDl~tg~~~----~~l~~~-- 678 (793)
.|=.|.+|++.-. +.-.+..+..+. .+ ++..|+|. ...++-.+..|+|++.|++...+- ..++..
T Consensus 183 -DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEeped 261 (433)
T KOG1354|consen 183 -DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPED 261 (433)
T ss_pred -cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccC
Confidence 4778999998743 111222222221 22 25889994 566777778999999999854321 111111
Q ss_pred c-------CCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEc-CCCcEEEeeeecCCC
Q 003822 679 A-------TGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCA-QTGRRLRDISLEGKG 728 (793)
Q Consensus 679 ~-------~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv-~tg~~l~~~~L~gh~ 728 (793)
+ ..-..+..+.|+++|+ |+++-.. -+| ++||+ ...+.+. +..-|.
T Consensus 262 p~~rsffseiIsSISDvKFs~sGr-yilsRDy-ltv-k~wD~nme~~pv~--t~~vh~ 314 (433)
T KOG1354|consen 262 PSSRSFFSEIISSISDVKFSHSGR-YILSRDY-LTV-KLWDLNMEAKPVE--TYPVHE 314 (433)
T ss_pred CcchhhHHHHhhhhhceEEccCCc-EEEEecc-cee-EEEeccccCCcce--EEeehH
Confidence 1 1113566788999999 8887543 467 99999 5667777 555554
No 275
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.67 E-value=1.2e-05 Score=83.55 Aligned_cols=222 Identities=12% Similarity=0.041 Sum_probs=139.3
Q ss_pred CCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcccccccCCceeEecCCCCe
Q 003822 474 LDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQL 553 (793)
Q Consensus 474 ~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V 553 (793)
.+|+|..||..+|+.+.......-......... .++..+++++.++.+..||..+++......... .+
T Consensus 1 ~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~----------~~ 68 (238)
T PF13360_consen 1 DDGTLSALDPRTGKELWSYDLGPGIGGPVATAV--PDGGRVYVASGDGNLYALDAKTGKVLWRFDLPG----------PI 68 (238)
T ss_dssp -TSEEEEEETTTTEEEEEEECSSSCSSEEETEE--EETTEEEEEETTSEEEEEETTTSEEEEEEECSS----------CG
T ss_pred CCCEEEEEECCCCCEEEEEECCCCCCCccceEE--EeCCEEEEEcCCCEEEEEECCCCCEEEEeeccc----------cc
Confidence 378999999999999888765221222332222 256678888999999999999887643322111 10
Q ss_pred EEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEE-cccCC---CCeEEEEEcCCCCcEEEEEeCCCeEEEEECCCCCcc
Q 003822 554 TSVHVNSMDELFLASGYSKNIALYDINSGRRLQVF-ADMHK---EHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQ 629 (793)
Q Consensus 554 ~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~-~~gh~---~~V~sv~fspdg~~~LaTgs~Dg~IrIWDlrt~~~~ 629 (793)
.... ...++.++++..++.++.+|..+|+.+... .. .. ...........+ ..++.+..++.|..+|+++++..
T Consensus 69 ~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~g~l~~~d~~tG~~~ 145 (238)
T PF13360_consen 69 SGAP-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLT-SSPPAGVRSSSSPAVDG-DRLYVGTSSGKLVALDPKTGKLL 145 (238)
T ss_dssp GSGE-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE--SSCTCSTB--SEEEEET-TEEEEEETCSEEEEEETTTTEEE
T ss_pred ccee-eecccccccccceeeeEecccCCcceeeeeccc-cccccccccccCceEec-CEEEEEeccCcEEEEecCCCcEE
Confidence 0001 135777777888889999999999999885 31 21 111222222235 67888888999999999998544
Q ss_pred ceEEccCCCCe---------EE-EEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCCCeEEE
Q 003822 630 PCYTASSSKGN---------VM-VCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNGRDYIV 699 (793)
Q Consensus 630 ~~~~l~~~~~~---------vs-v~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg~~~L~ 699 (793)
-.......... .. +.+. ++ .+++++.++.+..+|+.+++.+... . .+. . ......++. .|+
T Consensus 146 w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~v~~~~~~g~~~~~d~~tg~~~w~~--~-~~~--~-~~~~~~~~~-~l~ 216 (238)
T PF13360_consen 146 WKYPVGEPRGSSPISSFSDINGSPVIS-DG-RVYVSSGDGRVVAVDLATGEKLWSK--P-ISG--I-YSLPSVDGG-TLY 216 (238)
T ss_dssp EEEESSTT-SS--EEEETTEEEEEECC-TT-EEEEECCTSSEEEEETTTTEEEEEE--C-SS---E-CECEECCCT-EEE
T ss_pred EEeecCCCCCCcceeeecccccceEEE-CC-EEEEEcCCCeEEEEECCCCCEEEEe--c-CCC--c-cCCceeeCC-EEE
Confidence 33333221111 11 2222 34 7777777886444499999865322 1 111 1 122456666 777
Q ss_pred EEeCCCcEEEEEEcCCCcEEE
Q 003822 700 SGSCDEHVVRICCAQTGRRLR 720 (793)
Q Consensus 700 Sgs~Dg~II~IWDv~tg~~l~ 720 (793)
.++.++.+ ..||+.||+.+.
T Consensus 217 ~~~~~~~l-~~~d~~tG~~~W 236 (238)
T PF13360_consen 217 VTSSDGRL-YALDLKTGKVVW 236 (238)
T ss_dssp EEETTTEE-EEEETTTTEEEE
T ss_pred EEeCCCEE-EEEECCCCCEEe
Confidence 77789999 999999999886
No 276
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.66 E-value=3.7e-05 Score=83.88 Aligned_cols=176 Identities=15% Similarity=0.184 Sum_probs=131.5
Q ss_pred EeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCC-cEEEEEcCCCCCcccccc
Q 003822 461 YHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNG-SLKLYDIRHMPPSIRGMH 539 (793)
Q Consensus 461 fsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~Dg-tV~vWDl~~~~~~~~~~~ 539 (793)
|++.+|++++..+ -|...|.+...+-.++. +|.+.|.-..+. .+++-++.|..|| .+-++|.++++..
T Consensus 327 fa~~~Gd~ia~VS-RGkaFi~~~~~~~~iqv----~~~~~VrY~r~~-~~~e~~vigt~dgD~l~iyd~~~~e~k----- 395 (668)
T COG4946 327 FAVVNGDYIALVS-RGKAFIMRPWDGYSIQV----GKKGGVRYRRIQ-VDPEGDVIGTNDGDKLGIYDKDGGEVK----- 395 (668)
T ss_pred hccCCCcEEEEEe-cCcEEEECCCCCeeEEc----CCCCceEEEEEc-cCCcceEEeccCCceEEEEecCCceEE-----
Confidence 6666889999888 46777777655544432 677888888876 6777899999999 8999999987631
Q ss_pred cCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeCCC---
Q 003822 540 YGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQ--- 616 (793)
Q Consensus 540 ~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~Dg--- 616 (793)
..-...+.|.++..++++..++++-....+.++|+.+|.....=+ ...+-|+..+|||++ .++|-+--+|
T Consensus 396 -----r~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idk-S~~~lItdf~~~~ns-r~iAYafP~gy~t 468 (668)
T COG4946 396 -----RIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDK-SEYGLITDFDWHPNS-RWIAYAFPEGYYT 468 (668)
T ss_pred -----EeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecc-cccceeEEEEEcCCc-eeEEEecCcceee
Confidence 112233678999998888888888778999999999998665444 467889999999999 8888776665
Q ss_pred -eEEEEECCCCCccceEEccCCCCeEEEEEecCCCEEEEEe
Q 003822 617 -DVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLVSA 656 (793)
Q Consensus 617 -~IrIWDlrt~~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs 656 (793)
.|+++|+.+++.-.+.+..+ .-.+-+|.|||++|.--+
T Consensus 469 q~Iklydm~~~Kiy~vTT~ta--~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 469 QSIKLYDMDGGKIYDVTTPTA--YDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred eeEEEEecCCCeEEEecCCcc--cccCcccCCCCcEEEEEe
Confidence 59999999875433322222 233578999999987655
No 277
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.64 E-value=2.1e-07 Score=105.24 Aligned_cols=289 Identities=15% Similarity=0.200 Sum_probs=178.6
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCC-CeEEEEEeccCCCCCEEEEEEeeCC--CCEEEEEEcCCcEEEEEcCCCC
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHEN-ENIVSYIPSFGAMNSVLGLCWLKKY--PSKLIAGSDNGSLKLYDIRHMP 532 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t-~~~i~~l~~~~h~~~V~sv~fs~~~--g~~Lasgs~DgtV~vWDl~~~~ 532 (793)
+.++..+| .|+-+|.++.-| +.+-|+.. +....-+.. -..-.|-.+.|++.. ...+++.+.. .-.+|++....
T Consensus 27 ~~a~si~p-~grdi~lAsr~g-l~i~dld~p~~ppr~l~h-~tpw~vad~qws~h~a~~~wiVsts~q-kaiiwnlA~ss 102 (1081)
T KOG0309|consen 27 FNAVSINP-SGRDIVLASRQG-LYIIDLDDPFTPPRWLHH-ITPWQVADVQWSPHPAKPYWIVSTSNQ-KAIIWNLAKSS 102 (1081)
T ss_pred ccceeecc-ccchhhhhhhcC-eEEEeccCCCCCceeeec-cCcchhcceecccCCCCceeEEecCcc-hhhhhhhhcCC
Confidence 56788899 778888888777 55666653 232222211 123456777887432 2355555554 44589886543
Q ss_pred CcccccccCCceeEecCCCCeEEEEEccCCCEEEEEE-CCCcEEEEECCCC-cEEEEEcccCCCCeEEEEEcCCCCcEEE
Q 003822 533 PSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASG-YSKNIALYDINSG-RRLQVFADMHKEHINVVKFSNHSPSIFA 610 (793)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g-~Dg~I~IWDl~tg-~~l~~~~~gh~~~V~sv~fspdg~~~La 610 (793)
.. ....+...|...|+.+.|+++..-+++.+ -|..+..||+++. .++..+.. -......|+|+-..|+.+|
T Consensus 103 ~~------aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~-w~s~asqVkwnyk~p~vla 175 (1081)
T KOG0309|consen 103 SN------AIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSS-WRSAASQVKWNYKDPNVLA 175 (1081)
T ss_pred cc------ceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeec-ccccCceeeecccCcchhh
Confidence 21 11234556778899999999988777776 5999999999984 45555552 4455678999988866665
Q ss_pred EEeCCCeEEEEECCCCCccceEEccCCCCeEE-EEEec-CCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcEEE
Q 003822 611 TSSFDQDVKLWDLRQKPIQPCYTASSSKGNVM-VCFSP-DDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNYTR 688 (793)
Q Consensus 611 Tgs~Dg~IrIWDlrt~~~~~~~~l~~~~~~vs-v~fSp-dg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~ 688 (793)
+ +..+.|++||++.+. .+...+++|...+. +.|.. -...+.+.+.|++|+.||........... ......++..
T Consensus 176 s-shg~~i~vwd~r~gs-~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~--vtt~~piw~~ 251 (1081)
T KOG0309|consen 176 S-SHGNDIFVWDLRKGS-TPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRT--VTTNFPIWRG 251 (1081)
T ss_pred h-ccCCceEEEeccCCC-cceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccccccccccee--ccccCcceec
Confidence 4 556679999999875 45666677655553 55543 23457788889999999987653322221 1344567777
Q ss_pred EEeeCCCeEEEEEeCCCcEEEE---------EEcCCC-cEEEeeeecCCCCCccceeeeccCCccccCCccEEEEEEcCC
Q 003822 689 SYYLNGRDYIVSGSCDEHVVRI---------CCAQTG-RRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPS 758 (793)
Q Consensus 689 afspdg~~~L~Sgs~Dg~II~I---------WDv~tg-~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~ 758 (793)
.|.|-|..+++--...+.++.+ |++.++ +.+. ++.||. +.|....|...
T Consensus 252 r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh--~F~GH~-------------------D~V~eFlWR~r 310 (1081)
T KOG0309|consen 252 RYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVH--TFVGHD-------------------DVVLEFLWRKR 310 (1081)
T ss_pred cccccCceeEeccccCCeeeeeccccchhhhhccccCCccee--eecCcc-------------------hHHHHHhhhhc
Confidence 7777665444432222222233 333332 3344 444544 44444444311
Q ss_pred --------C-CceeeEeeEEEeCCCcEEEEcCCCC
Q 003822 759 --------S-KSEIVKVNLLASTDHCDKECSHGQH 784 (793)
Q Consensus 759 --------~-~~~iv~~~ltaS~Dg~VkvW~~~~~ 784 (793)
. ..+++ +-|.|.++|+|-.+..
T Consensus 311 ~e~~~d~d~rdfQLV----TWSkD~~lrlWpI~~~ 341 (1081)
T KOG0309|consen 311 KECDGDYDSRDFQLV----TWSKDQTLRLWPIDSQ 341 (1081)
T ss_pred ccccCCCCccceeEE----EeecCCceEeeeccHH
Confidence 1 12344 8899999999987654
No 278
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.59 E-value=6.9e-05 Score=92.59 Aligned_cols=281 Identities=10% Similarity=0.072 Sum_probs=170.1
Q ss_pred eEEEEEeCCCCCEEEEEe-CCC--eEEEEECCCCe---EEEEEecc---CCCCCEEEEEEeeCCCCEEEEEEcCCcEEEE
Q 003822 456 PRQFEYHPSISCLMVFGT-LDG--EIVVVNHENEN---IVSYIPSF---GAMNSVLGLCWLKKYPSKLIAGSDNGSLKLY 526 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs-~DG--~I~VWd~~t~~---~i~~l~~~---~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vW 526 (793)
+...+|.+.....+++.+ ... .|.+....... .+..+... ...+.|.++.|. .+...++.+..+|.|.+.
T Consensus 24 ~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl-~d~~~l~~~~~~Gdi~~~ 102 (928)
T PF04762_consen 24 ITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYL-ADSESLCIALASGDIILV 102 (928)
T ss_pred cceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEec-cCCCcEEEEECCceEEEE
Confidence 667778874444433333 222 24444333222 23333211 335689999998 677888889999999998
Q ss_pred ----EcCCCCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEE-----------------
Q 003822 527 ----DIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRL----------------- 585 (793)
Q Consensus 527 ----Dl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l----------------- 585 (793)
+...... .+.-.-...|.+++|+|++..++.++.++++.+..-. ..++
T Consensus 103 ~~~~~~~~~~~----------E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~-fd~i~E~~l~~~~~~~~~~Vs 171 (928)
T PF04762_consen 103 REDPDPDEDEI----------EIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRD-FDPISEVPLDSDDFGESKHVS 171 (928)
T ss_pred EccCCCCCcee----------EEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEecc-ceEEEEeecCccccCCCceee
Confidence 4444322 1112233679999999999999999988888876421 1111
Q ss_pred -------EEEcc--c---------------------CCCCeEEEEEcCCCCcEEEEEeC---C---CeEEEEECCCCCcc
Q 003822 586 -------QVFAD--M---------------------HKEHINVVKFSNHSPSIFATSSF---D---QDVKLWDLRQKPIQ 629 (793)
Q Consensus 586 -------~~~~~--g---------------------h~~~V~sv~fspdg~~~LaTgs~---D---g~IrIWDlrt~~~~ 629 (793)
..|.+ | +.+.-..|+|-.|| .+||+.+. . +.+|||+-. +...
T Consensus 172 VGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG-~yFAVss~~~~~~~~R~iRVy~Re-G~L~ 249 (928)
T PF04762_consen 172 VGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDG-EYFAVSSVEPETGSRRVIRVYSRE-GELQ 249 (928)
T ss_pred eccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCC-cEEEEEEEEcCCCceeEEEEECCC-ceEE
Confidence 11210 0 11133568899999 88888775 3 469999965 3222
Q ss_pred ceEEccCCCCe-EEEEEecCCCEEEEEeC---CCeEEEEEcCCCcEEEEEeeec-CCCCCcEEEEEeeCCCeEEEEEeCC
Q 003822 630 PCYTASSSKGN-VMVCFSPDDHYLLVSAV---DNEVRQLLAVDGRVHLNFGITA-TGSSQNYTRSYYLNGRDYIVSGSCD 704 (793)
Q Consensus 630 ~~~~l~~~~~~-vsv~fSpdg~~Lasgs~---Dg~I~IwDl~tg~~~~~l~~~~-~~~~~v~s~afspdg~~~L~Sgs~D 704 (793)
.+. ..-.+. -.++|-|.|++||+.-. ...|.+|. ++|-.+..|.... .....+..+.|++|+. .|+..-.|
T Consensus 250 stS--E~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~-iLAv~~~~ 325 (928)
T PF04762_consen 250 STS--EPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFE-RNGLRHGEFTLRFDPEEEKVIELAWNSDSE-ILAVWLED 325 (928)
T ss_pred ecc--ccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEe-cCCcEeeeEecCCCCCCceeeEEEECCCCC-EEEEEecC
Confidence 111 111111 14899999999998874 34566666 6777777777643 3445788999999999 77776655
Q ss_pred CcEEEEEEcCCCcEEEeeeecCCCCCccceeeeccCCccccCCccEEEEEEcCCCCceeeEeeEEEeCCCcEEE
Q 003822 705 EHVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKSEIVKVNLLASTDHCDKE 778 (793)
Q Consensus 705 g~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~~~~iv~~~ltaS~Dg~Vkv 778 (793)
. | .+|-...-.=.-+-.+.-.. ...+..+.|||..+..+. +++.+|.+..
T Consensus 326 ~-v-qLWt~~NYHWYLKqei~~~~------------------~~~~~~~~Wdpe~p~~L~----v~t~~g~~~~ 375 (928)
T PF04762_consen 326 R-V-QLWTRSNYHWYLKQEIRFSS------------------SESVNFVKWDPEKPLRLH----VLTSNGQYEI 375 (928)
T ss_pred C-c-eEEEeeCCEEEEEEEEEccC------------------CCCCCceEECCCCCCEEE----EEecCCcEEE
Confidence 4 7 99977665411111111111 112344888887766666 6666555544
No 279
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.57 E-value=1.6e-05 Score=81.25 Aligned_cols=247 Identities=13% Similarity=0.076 Sum_probs=153.2
Q ss_pred CCCEEEEEEcCCcEEEEEcCCCCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEc
Q 003822 510 YPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFA 589 (793)
Q Consensus 510 ~g~~Lasgs~DgtV~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~ 589 (793)
...+||.|+.-|...+|...+.+........+...++. +...+ -....+..++.|.++++.++.-+..-....
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~-----~~r~c--d~~~~~~i~sndht~k~~~~~~~s~~~~~h 155 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTL-----VKRYC--DLKFPLNIASNDHTGKTMVVSGDSNKFAVH 155 (344)
T ss_pred cccEEEeccccceeeeecccCcccceeeecccccchhh-----hhhhc--ccccceeeccCCcceeEEEEecCcccceee
Confidence 34589999999999999998765422211111111100 01111 122346667788888888877443322221
Q ss_pred ccCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEECCCCC--ccceEEccCCCCeEEEEEecCCCEEEEEeCCCeEEEEEcC
Q 003822 590 DMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKP--IQPCYTASSSKGNVMVCFSPDDHYLLVSAVDNEVRQLLAV 667 (793)
Q Consensus 590 ~gh~~~V~sv~fspdg~~~LaTgs~Dg~IrIWDlrt~~--~~~~~~l~~~~~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~ 667 (793)
. ..-.++++++++++ .++++.+....|-.|.+.... ...++..+......+..|+.....+|++..||++.|||++
T Consensus 156 ~-~~~~~ns~~~snd~-~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR 233 (344)
T KOG4532|consen 156 N-QNLTQNSLHYSNDP-SWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVR 233 (344)
T ss_pred c-cccceeeeEEcCCC-ceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEec
Confidence 1 11237899999998 899999998999999887642 2223444455566678999999999999999999999998
Q ss_pred CCcEEEEEe--eecCCCCCcEEEEEeeCCCe-EEEEEeCCCcEEEEEEcCCCcEEEeeeecCCCCCccceeeeccCCccc
Q 003822 668 DGRVHLNFG--ITATGSSQNYTRSYYLNGRD-YIVSGSCDEHVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPFR 744 (793)
Q Consensus 668 tg~~~~~l~--~~~~~~~~v~s~afspdg~~-~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~ 744 (793)
......... ..+.+.+.+..+.|++.|.. +|.-.-.-+.+ .+.|+++++..+.+.+.. ..++
T Consensus 234 ~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~-hv~D~R~~~~~q~I~i~~--------------d~~~ 298 (344)
T KOG4532|consen 234 NMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRV-HVVDTRNYVNHQVIVIPD--------------DVER 298 (344)
T ss_pred ccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceE-EEEEcccCceeeEEecCc--------------cccc
Confidence 765433222 23456677888899986643 33333334567 999999998777222211 2233
Q ss_pred cCCc-cEEEEEEcCCCCceeeEeeEEEeCCCcEEEEcCCCCCC
Q 003822 745 DFNM-SILAAYTRPSSKSEIVKVNLLASTDHCDKECSHGQHSR 786 (793)
Q Consensus 745 ~h~~-~V~sva~~P~~~~~iv~~~ltaS~Dg~VkvW~~~~~~~ 786 (793)
.|.. .+.+..|+.++... ++++++. +-.|+...+++
T Consensus 299 ~~~tq~ifgt~f~~~n~s~-----~v~~e~~-~ae~ni~srsR 335 (344)
T KOG4532|consen 299 KHNTQHIFGTNFNNENESN-----DVKNELQ-GAEYNILSRSR 335 (344)
T ss_pred cccccccccccccCCCccc-----ccccchh-hheeeccccce
Confidence 3443 36677776643222 2344443 35787777663
No 280
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.56 E-value=0.00015 Score=76.21 Aligned_cols=227 Identities=12% Similarity=0.134 Sum_probs=145.0
Q ss_pred EEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCccc
Q 003822 457 RQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIR 536 (793)
Q Consensus 457 ~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~~ 536 (793)
-+..|.+.++.++++....+.|..|+..++.... +... ...++++..++ ..++.+... .+.++|..+++....
T Consensus 3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~----~~~G~~~~~~~-g~l~v~~~~-~~~~~d~~~g~~~~~ 75 (246)
T PF08450_consen 3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLP----GPNGMAFDRPD-GRLYVADSG-GIAVVDPDTGKVTVL 75 (246)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESS----SEEEEEEECTT-SEEEEEETT-CEEEEETTTTEEEEE
T ss_pred cceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecC----CCceEEEEccC-CEEEEEEcC-ceEEEecCCCcEEEE
Confidence 3578998677778887789999999998876543 3321 26677775344 566666655 456668887643111
Q ss_pred ccccCCceeEecCCCCeEEEEEccCCCEEEEEECC--------CcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcE
Q 003822 537 GMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYS--------KNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSI 608 (793)
Q Consensus 537 ~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~D--------g~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~ 608 (793)
...... .......+.+++.+++..+++.... |.|..++.. ++...... .-...+.++|+|++..+
T Consensus 76 ~~~~~~----~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~--~~~~pNGi~~s~dg~~l 148 (246)
T PF08450_consen 76 ADLPDG----GVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD--GLGFPNGIAFSPDGKTL 148 (246)
T ss_dssp EEEETT----CSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE--EESSEEEEEEETTSSEE
T ss_pred eeccCC----CcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec--CcccccceEECCcchhe
Confidence 110000 0022457899998888866665532 557778877 55444443 45567899999999545
Q ss_pred EEEEeCCCeEEEEECCCCCc-----cceEEccCCCC-eEEEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCC
Q 003822 609 FATSSFDQDVKLWDLRQKPI-----QPCYTASSSKG-NVMVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGS 682 (793)
Q Consensus 609 LaTgs~Dg~IrIWDlrt~~~-----~~~~~l~~~~~-~vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~ 682 (793)
+++-+..+.|..|++..... .....+....+ +-.+++..+|+..++....+.|.++|.. |+.+..+... .
T Consensus 149 yv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p---~ 224 (246)
T PF08450_consen 149 YVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELP---V 224 (246)
T ss_dssp EEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-S---S
T ss_pred eecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCC---C
Confidence 56777888999999864322 12223333332 3359999999988887788999999977 9988877642 3
Q ss_pred CCcEEEEEe-eCCCeEEEEE
Q 003822 683 SQNYTRSYY-LNGRDYIVSG 701 (793)
Q Consensus 683 ~~v~s~afs-pdg~~~L~Sg 701 (793)
..+.+++|. ++...+++|.
T Consensus 225 ~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 225 PRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp SSEEEEEEESTTSSEEEEEE
T ss_pred CCEEEEEEECCCCCEEEEEe
Confidence 478889985 4545344443
No 281
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.56 E-value=5.1e-05 Score=85.67 Aligned_cols=232 Identities=12% Similarity=0.074 Sum_probs=142.4
Q ss_pred CCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEE-EEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcccccccCCce
Q 003822 466 SCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLG-LCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGT 544 (793)
Q Consensus 466 ~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~s-v~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~~~~~~~~~~ 544 (793)
+..++.++.+|.+..+|.++|+.+......+ .+.+ ... .+..++.+..++.+..+|.++++.......... .
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~---~~~ssP~v---~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~-~ 192 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAG---EALSRPVV---SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVP-S 192 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCCC---ceecCCEE---ECCEEEEECCCCEEEEEEccCCCEeeeecCCCC-c
Confidence 4567788889999999999999887765422 2222 111 245677788899999999999887544322110 0
Q ss_pred eEec-CCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCC------CeEEEEEcC--CCCcEEEEEeCC
Q 003822 545 VTFD-EFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKE------HINVVKFSN--HSPSIFATSSFD 615 (793)
Q Consensus 545 ~~~~-~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~------~V~sv~fsp--dg~~~LaTgs~D 615 (793)
.... ...++ . .++.+++++.+|.+..+|..+|+.+......... ....+..+| .+ ..++.++.+
T Consensus 193 ~~~~~~~sP~----v--~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~-~~vy~~~~~ 265 (394)
T PRK11138 193 LTLRGESAPA----T--AFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVG-GVVYALAYN 265 (394)
T ss_pred ccccCCCCCE----E--ECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEEC-CEEEEEEcC
Confidence 0000 01111 1 2456777778899999999999887665411110 001111122 23 356667789
Q ss_pred CeEEEEECCCCCccceEEccCCCCeEEEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCCC
Q 003822 616 QDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNGR 695 (793)
Q Consensus 616 g~IrIWDlrt~~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg~ 695 (793)
|.+..+|..+++. ....... ....+ ...+..+++++.+|.+..+|..+|+.+-..... ......+.+. .+.
T Consensus 266 g~l~ald~~tG~~--~W~~~~~-~~~~~--~~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~--~~~~~~sp~v--~~g 336 (394)
T PRK11138 266 GNLVALDLRSGQI--VWKREYG-SVNDF--AVDGGRIYLVDQNDRVYALDTRGGVELWSQSDL--LHRLLTAPVL--YNG 336 (394)
T ss_pred CeEEEEECCCCCE--EEeecCC-CccCc--EEECCEEEEEcCCCeEEEEECCCCcEEEccccc--CCCcccCCEE--ECC
Confidence 9999999998843 3332211 11111 224677888888999999999999875443211 1111111111 233
Q ss_pred eEEEEEeCCCcEEEEEEcCCCcEEEee
Q 003822 696 DYIVSGSCDEHVVRICCAQTGRRLRDI 722 (793)
Q Consensus 696 ~~L~Sgs~Dg~II~IWDv~tg~~l~~~ 722 (793)
+|+.++.||.+ ++.|..+|+.+...
T Consensus 337 -~l~v~~~~G~l-~~ld~~tG~~~~~~ 361 (394)
T PRK11138 337 -YLVVGDSEGYL-HWINREDGRFVAQQ 361 (394)
T ss_pred -EEEEEeCCCEE-EEEECCCCCEEEEE
Confidence 68889999999 99999999998833
No 282
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.56 E-value=7.4e-07 Score=95.52 Aligned_cols=162 Identities=13% Similarity=0.206 Sum_probs=114.7
Q ss_pred cccceEEEEEeCCCCCEEEEEeCCCeEEEEECCCCe----EEEEEeccCCCCCEEEEEEeeCCCCEEEE---EEcCCcEE
Q 003822 452 RSFRPRQFEYHPSISCLMVFGTLDGEIVVVNHENEN----IVSYIPSFGAMNSVLGLCWLKKYPSKLIA---GSDNGSLK 524 (793)
Q Consensus 452 ~~~~V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~----~i~~l~~~~h~~~V~sv~fs~~~g~~Las---gs~DgtV~ 524 (793)
.+.++..+.++| +++++|.+..+....+++..... ....... ...-+++.|. .+...... ++....+.
T Consensus 61 ~~~a~~~~~~s~-~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v---~~~~~ai~~~-~~~~sv~v~dkagD~~~~d 135 (390)
T KOG3914|consen 61 LSLAPALVLTSD-SGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCV---PKRPTAISFI-REDTSVLVADKAGDVYSFD 135 (390)
T ss_pred hhccccccccCC-CceEEEEEeCCCceEEEEEecCCCcceeeeEeec---ccCcceeeee-eccceEEEEeecCCceeee
Confidence 334466677888 89999999988887787765432 2222222 2233344443 22233333 34445556
Q ss_pred EEEcCCCCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCC
Q 003822 525 LYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNH 604 (793)
Q Consensus 525 vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspd 604 (793)
+|....+.. .....|-+.++.|+++|++..++++..|..|++-.....-.+..|--||+..|..++.-++
T Consensus 136 i~s~~~~~~----------~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~ 205 (390)
T KOG3914|consen 136 ILSADSGRC----------EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN 205 (390)
T ss_pred eecccccCc----------chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC
Confidence 665554322 2345566789999999999999999999999998888777777777789999999999876
Q ss_pred CCcEEEEEeCCCeEEEEECCCCCccc
Q 003822 605 SPSIFATSSFDQDVKLWDLRQKPIQP 630 (793)
Q Consensus 605 g~~~LaTgs~Dg~IrIWDlrt~~~~~ 630 (793)
. .|++||.|+++++||+++++...
T Consensus 206 ~--~LlS~sGD~tlr~Wd~~sgk~L~ 229 (390)
T KOG3914|consen 206 Y--LLLSGSGDKTLRLWDITSGKLLD 229 (390)
T ss_pred c--eeeecCCCCcEEEEecccCCccc
Confidence 5 69999999999999999986543
No 283
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.54 E-value=4.6e-05 Score=86.55 Aligned_cols=214 Identities=12% Similarity=0.062 Sum_probs=127.7
Q ss_pred CeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCE-EEEEEcC---CcEEEEEcCCCCCcccccccCCceeEecCCC
Q 003822 476 GEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSK-LIAGSDN---GSLKLYDIRHMPPSIRGMHYGAGTVTFDEFD 551 (793)
Q Consensus 476 G~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~-Lasgs~D---gtV~vWDl~~~~~~~~~~~~~~~~~~~~~~~ 551 (793)
..|.+-|.+... ...+.. + +.+....|+ ++|+. ++..+.+ ..|.++|+.+++.... ....+
T Consensus 169 ~~l~~~d~dg~~-~~~~~~-~--~~~~~p~wS-pDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~l----------t~~~g 233 (419)
T PRK04043 169 SNIVLADYTLTY-QKVIVK-G--GLNIFPKWA-NKEQTAFYYTSYGERKPTLYKYNLYTGKKEKI----------ASSQG 233 (419)
T ss_pred ceEEEECCCCCc-eeEEcc-C--CCeEeEEEC-CCCCcEEEEEEccCCCCEEEEEECCCCcEEEE----------ecCCC
Confidence 355555654333 333321 2 367788998 67774 5544433 4688889887654211 11223
Q ss_pred CeEEEEEccCCCEEEEEEC---CCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeCCC--eEEEEECCCC
Q 003822 552 QLTSVHVNSMDELFLASGY---SKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQ--DVKLWDLRQK 626 (793)
Q Consensus 552 ~V~sv~~s~~~~~lla~g~---Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~Dg--~IrIWDlrt~ 626 (793)
......|+|++..++.... +..|.++|+.+++.. .+.. +........|+|+|..++++....+ .|.++|+.++
T Consensus 234 ~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~-~LT~-~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g 311 (419)
T PRK04043 234 MLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLT-QITN-YPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSG 311 (419)
T ss_pred cEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEE-Eccc-CCCccCccEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence 3456779899888776643 467888899877643 3432 3333345689999955555554444 4888888876
Q ss_pred CccceEEccCCCCeEEEEEecCCCEEEEEeCC---------CeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCCCeE
Q 003822 627 PIQPCYTASSSKGNVMVCFSPDDHYLLVSAVD---------NEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNGRDY 697 (793)
Q Consensus 627 ~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs~D---------g~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg~~~ 697 (793)
....+. ..+.. ...|||||++|+..+.. ..|.+.|+.++.. ..+.. . .......|+|||+..
T Consensus 312 ~~~rlt-~~g~~---~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~--~--~~~~~p~~SPDG~~I 382 (419)
T PRK04043 312 SVEQVV-FHGKN---NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLTA--N--GVNQFPRFSSDGGSI 382 (419)
T ss_pred CeEeCc-cCCCc---CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECCC--C--CCcCCeEECCCCCEE
Confidence 543322 22221 24899999999877653 3688889888865 33321 1 123357899999944
Q ss_pred EEEEeCCCcE-EEEEEcCC
Q 003822 698 IVSGSCDEHV-VRICCAQT 715 (793)
Q Consensus 698 L~Sgs~Dg~I-I~IWDv~t 715 (793)
+++....+.- |.+.++..
T Consensus 383 ~f~~~~~~~~~L~~~~l~g 401 (419)
T PRK04043 383 MFIKYLGNQSALGIIRLNY 401 (419)
T ss_pred EEEEccCCcEEEEEEecCC
Confidence 4444333333 25556543
No 284
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.51 E-value=9.2e-05 Score=84.11 Aligned_cols=157 Identities=13% Similarity=0.126 Sum_probs=101.7
Q ss_pred CeEEEEEccCCCE-EEEEEC---CCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeCC--CeEEEEECCC
Q 003822 552 QLTSVHVNSMDEL-FLASGY---SKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFD--QDVKLWDLRQ 625 (793)
Q Consensus 552 ~V~sv~~s~~~~~-lla~g~---Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~D--g~IrIWDlrt 625 (793)
....-.|+|+++. ++.++. +..|+++|+.+++...... ..+......|+|||..++++.+.+ ..|.++|+.+
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~--~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~ 266 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS--SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNT 266 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec--CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCC
Confidence 5667889999885 554443 3679999999887655443 445566788999995555565554 4588889887
Q ss_pred CCccceEEccCCCCeEEEEEecCCCEEEEEeCC-C--eEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCCCeEEEEEe
Q 003822 626 KPIQPCYTASSSKGNVMVCFSPDDHYLLVSAVD-N--EVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNGRDYIVSGS 702 (793)
Q Consensus 626 ~~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs~D-g--~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs 702 (793)
+...++....+ ......|+|||+.|+-.+.. + .|+++|+.+|+..+... .+.. ...|+|+|+.++++..
T Consensus 267 g~~~~LT~~~~--~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~---~g~~---~~~~SPDG~~Ia~~~~ 338 (419)
T PRK04043 267 KTLTQITNYPG--IDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVF---HGKN---NSSVSTYKNYIVYSSR 338 (419)
T ss_pred CcEEEcccCCC--ccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCcc---CCCc---CceECCCCCEEEEEEc
Confidence 75444332222 22346899999988877632 2 68888998887633221 1221 2489999994444443
Q ss_pred CC--------CcEEEEEEcCCCcEE
Q 003822 703 CD--------EHVVRICCAQTGRRL 719 (793)
Q Consensus 703 ~D--------g~II~IWDv~tg~~l 719 (793)
.. ..+ .+.|+.+|+..
T Consensus 339 ~~~~~~~~~~~~I-~v~d~~~g~~~ 362 (419)
T PRK04043 339 ETNNEFGKNTFNL-YLISTNSDYIR 362 (419)
T ss_pred CCCcccCCCCcEE-EEEECCCCCeE
Confidence 32 245 77788777643
No 285
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.50 E-value=3.6e-05 Score=84.00 Aligned_cols=212 Identities=12% Similarity=0.122 Sum_probs=142.9
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEEEec----c-C--CCCCEE---EEE-EeeCCCCEEEEEEcCCcEEEEEcCCCCC
Q 003822 465 ISCLMVFGTLDGEIVVVNHENENIVSYIPS----F-G--AMNSVL---GLC-WLKKYPSKLIAGSDNGSLKLYDIRHMPP 533 (793)
Q Consensus 465 d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~----~-~--h~~~V~---sv~-fs~~~g~~Lasgs~DgtV~vWDl~~~~~ 533 (793)
||+.++.. ..|.|.+||.++..... +.. . . ....+. -+. |+..+|++++..|. |..-+.+...+.
T Consensus 277 DGkrIvFq-~~GdIylydP~td~lek-ldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~~~~- 352 (668)
T COG4946 277 DGKRIVFQ-NAGDIYLYDPETDSLEK-LDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPWDGY- 352 (668)
T ss_pred CCcEEEEe-cCCcEEEeCCCcCccee-eecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECCCCCe-
Confidence 66666654 46889999988765432 211 0 0 001111 111 44567889988886 566666554432
Q ss_pred cccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCC-cEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEE
Q 003822 534 SIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSK-NIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATS 612 (793)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg-~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTg 612 (793)
.+...+...|.-..+..+...++.+..|| .+-|+|.++++..+... .-+.|.++..+|+| +.++.+
T Consensus 353 ----------~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~--~lg~I~av~vs~dG-K~~vva 419 (668)
T COG4946 353 ----------SIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEK--DLGNIEAVKVSPDG-KKVVVA 419 (668)
T ss_pred ----------eEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeC--CccceEEEEEcCCC-cEEEEE
Confidence 22334445567677766777888888887 89999999776554443 67889999999999 889999
Q ss_pred eCCCeEEEEECCCCCccceEEccCCCCeE-EEEEecCCCEEEEEeCCC----eEEEEEcCCCcEEEEEeeecCCCCCcEE
Q 003822 613 SFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLVSAVDN----EVRQLLAVDGRVHLNFGITATGSSQNYT 687 (793)
Q Consensus 613 s~Dg~IrIWDlrt~~~~~~~~l~~~~~~v-sv~fSpdg~~Lasgs~Dg----~I~IwDl~tg~~~~~l~~~~~~~~~v~s 687 (793)
.....+.+.|+.++....+ -....+.+ .+.|||+++++|-+-.+| .|+++|+..++....- .....-.+
T Consensus 420 Ndr~el~vididngnv~~i--dkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vT----T~ta~Dfs 493 (668)
T COG4946 420 NDRFELWVIDIDNGNVRLI--DKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVT----TPTAYDFS 493 (668)
T ss_pred cCceEEEEEEecCCCeeEe--cccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEec----CCcccccC
Confidence 9889999999999854432 22333444 599999999999887665 7899999988764322 23334556
Q ss_pred EEEeeCCCeEEEE
Q 003822 688 RSYYLNGRDYIVS 700 (793)
Q Consensus 688 ~afspdg~~~L~S 700 (793)
-+|.|+++ +|.-
T Consensus 494 PaFD~d~r-yLYf 505 (668)
T COG4946 494 PAFDPDGR-YLYF 505 (668)
T ss_pred cccCCCCc-EEEE
Confidence 77888887 5543
No 286
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.50 E-value=6.1e-06 Score=86.88 Aligned_cols=247 Identities=11% Similarity=0.089 Sum_probs=163.6
Q ss_pred cCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcE
Q 003822 495 FGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNI 574 (793)
Q Consensus 495 ~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I 574 (793)
.||.+.|++.... +...-+++.+.|.++++|--++...... .+....+.+++++.+++....++++-..|++
T Consensus 21 eG~~d~vn~~~l~-~~e~gv~~~s~drtvrv~lkrds~q~wp-------sI~~~mP~~~~~~~y~~e~~~L~vg~~ngtv 92 (404)
T KOG1409|consen 21 EGSQDDVNAAILI-PKEEGVISVSEDRTVRVWLKRDSGQYWP-------SIYHYMPSPCSAMEYVSESRRLYVGQDNGTV 92 (404)
T ss_pred cCchhhhhhheec-cCCCCeEEccccceeeeEEeccccccCc-------hhhhhCCCCceEeeeeccceEEEEEEecceE
Confidence 3888888877765 5667799999999999997654322111 2223344778999998888888888788999
Q ss_pred EEEECC----CCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEECCCCCccceEEccCCCCeEEEEEecCCC
Q 003822 575 ALYDIN----SGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDH 650 (793)
Q Consensus 575 ~IWDl~----tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~~~~vsv~fSpdg~ 650 (793)
.-+.+. ....++... .|...|..+-|+-.. .++++.+.|..+.---.+.+...--+.+..... .+.+.-.
T Consensus 93 tefs~sedfnkm~~~r~~~-~h~~~v~~~if~~~~-e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t--~~~~d~~-- 166 (404)
T KOG1409|consen 93 TEFALSEDFNKMTFLKDYL-AHQARVSAIVFSLTH-EWVLSTGKDKQFAWHCTESGNRLGGYNFETPAS--ALQFDAL-- 166 (404)
T ss_pred EEEEhhhhhhhcchhhhhh-hhhcceeeEEecCCc-eeEEEeccccceEEEeeccCCcccceEeeccCC--CCceeeE--
Confidence 888654 344455555 699999999998766 789999998776543334432222222111111 1112111
Q ss_pred EEEEEeCCCeEEEEEcCC--CcEEEEEeeecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCC
Q 003822 651 YLLVSAVDNEVRQLLAVD--GRVHLNFGITATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKG 728 (793)
Q Consensus 651 ~Lasgs~Dg~I~IwDl~t--g~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~ 728 (793)
+..+|...|.|....+.. -.++.++. ++...++..+|.+..+ .+.+|..|..+ .+||+.-.+-+. +.+.||.
T Consensus 167 ~~fvGd~~gqvt~lr~~~~~~~~i~~~~---~h~~~~~~l~Wd~~~~-~LfSg~~d~~v-i~wdigg~~g~~-~el~gh~ 240 (404)
T KOG1409|consen 167 YAFVGDHSGQITMLKLEQNGCQLITTFN---GHTGEVTCLKWDPGQR-LLFSGASDHSV-IMWDIGGRKGTA-YELQGHN 240 (404)
T ss_pred EEEecccccceEEEEEeecCCceEEEEc---CcccceEEEEEcCCCc-EEEeccccCce-EEEeccCCccee-eeeccch
Confidence 566676777776554433 33444443 6778899999999888 99999999999 999997665554 3555554
Q ss_pred CCccceeeeccCCccccCCccEEEEEEcCCCCceeeEeeEEEeCCCcEEEEcCCCCC
Q 003822 729 SGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKSEIVKVNLLASTDHCDKECSHGQHS 785 (793)
Q Consensus 729 ~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~~~~iv~~~ltaS~Dg~VkvW~~~~~~ 785 (793)
..|..+.+-+. .+..++++.||.|.+|+.....
T Consensus 241 -------------------~kV~~l~~~~~-----t~~l~S~~edg~i~~w~mn~~r 273 (404)
T KOG1409|consen 241 -------------------DKVQALSYAQH-----TRQLISCGEDGGIVVWNMNVKR 273 (404)
T ss_pred -------------------hhhhhhhhhhh-----heeeeeccCCCeEEEEecccee
Confidence 34544444442 2233488999999999976553
No 287
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.49 E-value=4.5e-08 Score=97.03 Aligned_cols=100 Identities=29% Similarity=0.434 Sum_probs=30.8
Q ss_pred ceeEEeccCCchhhHHHHHhhcCCceeeEeecccccccccccccccceeeEEeeccccccccccccccccccccceeccc
Q 003822 101 KLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMC 180 (793)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (793)
|+|..+|+.+..-+ +++|...=-.=++|+|+.+.+++++-...+.+|++|+|+ ...|+++.+.++.++|+|..|.+.
T Consensus 20 ~~~~L~L~~n~I~~--Ie~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~-~N~I~~i~~~l~~~lp~L~~L~L~ 96 (175)
T PF14580_consen 20 KLRELNLRGNQIST--IENLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLS-NNRISSISEGLDKNLPNLQELYLS 96 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE---SS---S-CHHHHHH-TT--EEE-T
T ss_pred cccccccccccccc--ccchhhhhcCCCEEECCCCCCccccCccChhhhhhcccC-CCCCCccccchHHhCCcCCEEECc
Confidence 45666666654433 333321000124667777777777666666777777776 566666665555566777777777
Q ss_pred cccchhhhHHHHHHhcCCccccee
Q 003822 181 ETRVGNLWTTIAALSKLPSLAELR 204 (793)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~ 204 (793)
.-+|.+ |..+..|++||+|++|.
T Consensus 97 ~N~I~~-l~~l~~L~~l~~L~~L~ 119 (175)
T PF14580_consen 97 NNKISD-LNELEPLSSLPKLRVLS 119 (175)
T ss_dssp TS---S-CCCCGGGGG-TT--EEE
T ss_pred CCcCCC-hHHhHHHHcCCCcceee
Confidence 666666 35556666666666553
No 288
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.48 E-value=0.00019 Score=75.45 Aligned_cols=203 Identities=15% Similarity=0.106 Sum_probs=127.4
Q ss_pred EEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCC
Q 003822 503 GLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSG 582 (793)
Q Consensus 503 sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg 582 (793)
++.|.+.++.++++--..+.|..|+..++.... +.. ....++.+...++.++++...+ +.++|..++
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-----------~~~-~~~~G~~~~~~~g~l~v~~~~~-~~~~d~~~g 70 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-----------IDL-PGPNGMAFDRPDGRLYVADSGG-IAVVDPDTG 70 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-----------EES-SSEEEEEEECTTSEEEEEETTC-EEEEETTTT
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-----------Eec-CCCceEEEEccCCEEEEEEcCc-eEEEecCCC
Confidence 567764466677776678999999998864321 111 2267778865667777777644 455599988
Q ss_pred cEEEEEcc---c-CCCCeEEEEEcCCCCcEEEEEeCC--------CeEEEEECCCCCccceEEccCCCCeEEEEEecCCC
Q 003822 583 RRLQVFAD---M-HKEHINVVKFSNHSPSIFATSSFD--------QDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDH 650 (793)
Q Consensus 583 ~~l~~~~~---g-h~~~V~sv~fspdg~~~LaTgs~D--------g~IrIWDlrt~~~~~~~~l~~~~~~vsv~fSpdg~ 650 (793)
+....... . .....+.+++.|+| ++.++.... |.|..++.. ++..... ..-..+..++|+|+++
T Consensus 71 ~~~~~~~~~~~~~~~~~~ND~~vd~~G-~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~--~~~~~pNGi~~s~dg~ 146 (246)
T PF08450_consen 71 KVTVLADLPDGGVPFNRPNDVAVDPDG-NLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVA--DGLGFPNGIAFSPDGK 146 (246)
T ss_dssp EEEEEEEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEE--EEESSEEEEEEETTSS
T ss_pred cEEEEeeccCCCcccCCCceEEEcCCC-CEEEEecCCCccccccccceEEECCC-CeEEEEe--cCcccccceEECCcch
Confidence 65444331 1 34577899999999 677776654 557777776 3322222 2223445699999999
Q ss_pred EEEE-EeCCCeEEEEEcCCCc--EE--EEEeeecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEEeeeec
Q 003822 651 YLLV-SAVDNEVRQLLAVDGR--VH--LNFGITATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRLRDISLE 725 (793)
Q Consensus 651 ~Las-gs~Dg~I~IwDl~tg~--~~--~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~ 725 (793)
.|++ -+..+.|..|++.... .. ..+..........-.+++..+|. +.++....+.| .+++.. |+.+..+.+.
T Consensus 147 ~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~-l~va~~~~~~I-~~~~p~-G~~~~~i~~p 223 (246)
T PF08450_consen 147 TLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGN-LWVADWGGGRI-VVFDPD-GKLLREIELP 223 (246)
T ss_dssp EEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS--EEEEEETTTEE-EEEETT-SCEEEEEE-S
T ss_pred heeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCC-EEEEEcCCCEE-EEECCC-ccEEEEEcCC
Confidence 8865 4567889999885322 21 12211111212366788999998 66666677788 999987 9988844443
No 289
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.47 E-value=3.6e-07 Score=95.87 Aligned_cols=151 Identities=12% Similarity=0.143 Sum_probs=117.7
Q ss_pred EEEEcCCcEEEEEcCCCCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCC-----cEEEEEc
Q 003822 515 IAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSG-----RRLQVFA 589 (793)
Q Consensus 515 asgs~DgtV~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg-----~~l~~~~ 589 (793)
++.+.+-.|-+-|++++... .|...+.|.++.|+..++.++.|..+|.|..+|++.+ .+...+-
T Consensus 228 fs~G~sqqv~L~nvetg~~q-----------sf~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly 296 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQ-----------SFQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY 296 (425)
T ss_pred ecccccceeEEEEeeccccc-----------ccccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE
Confidence 55566778889899886431 3444567888899888999999999999999999964 5666776
Q ss_pred ccCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEECCCCCc-cceEEccCCCCeEE---EEEecCCCEEEEEeCCCeEEEEE
Q 003822 590 DMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPI-QPCYTASSSKGNVM---VCFSPDDHYLLVSAVDNEVRQLL 665 (793)
Q Consensus 590 ~gh~~~V~sv~fspdg~~~LaTgs~Dg~IrIWDlrt~~~-~~~~~l~~~~~~vs---v~fSpdg~~Lasgs~Dg~I~IwD 665 (793)
|...|+++..-.....+|++.+.+|+|++||+|.-++ ..+....+|..... +-..+....+++++.|...+||.
T Consensus 297 --h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWs 374 (425)
T KOG2695|consen 297 --HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWS 374 (425)
T ss_pred --cCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEe
Confidence 9999999987763337889999999999999997644 23555566654432 45567788899999999999999
Q ss_pred cCCCcEEEEEeee
Q 003822 666 AVDGRVHLNFGIT 678 (793)
Q Consensus 666 l~tg~~~~~l~~~ 678 (793)
+..|.++.++...
T Consensus 375 l~~ghLl~tipf~ 387 (425)
T KOG2695|consen 375 LDSGHLLCTIPFP 387 (425)
T ss_pred cccCceeeccCCC
Confidence 9999998888643
No 290
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.45 E-value=2.8e-05 Score=86.36 Aligned_cols=248 Identities=12% Similarity=0.148 Sum_probs=144.6
Q ss_pred eEEEEEeCCCCCEEEEEeC-----------CCeEEEEECCCCeEEEEEeccCCCCCEEE-EEEeeCCCCEEEEEEcCCcE
Q 003822 456 PRQFEYHPSISCLMVFGTL-----------DGEIVVVNHENENIVSYIPSFGAMNSVLG-LCWLKKYPSKLIAGSDNGSL 523 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~-----------DG~I~VWd~~t~~~i~~l~~~~h~~~V~s-v~fs~~~g~~Lasgs~DgtV 523 (793)
|.-+.||| ..++|+|=+. ...+.|||+.+|.....+........++- ..|+ .+++++|--..+ +|
T Consensus 252 Vq~idfSP-~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS-~DdKy~Arm~~~-si 328 (698)
T KOG2314|consen 252 VQFIDFSP-NEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWS-HDDKYFARMTGN-SI 328 (698)
T ss_pred ceeeecCC-ccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEec-cCCceeEEeccc-eE
Confidence 77799999 8899998652 25799999999998888765333334443 4687 788888876664 78
Q ss_pred EEEEcCCCCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEEC-----CCc-------------------------
Q 003822 524 KLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY-----SKN------------------------- 573 (793)
Q Consensus 524 ~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~-----Dg~------------------------- 573 (793)
.||+..+....-... -....|....|+|.+..++.-.- -..
T Consensus 329 sIyEtpsf~lld~Ks---------lki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckL 399 (698)
T KOG2314|consen 329 SIYETPSFMLLDKKS---------LKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKL 399 (698)
T ss_pred EEEecCceeeecccc---------cCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEE
Confidence 899876522100000 00012223333333222221110 011
Q ss_pred ---------------------------EEEEECCCCc-EEEEEcccCCCCeEEEEEcCCCCcEEEEEeC--CCeEEEEEC
Q 003822 574 ---------------------------IALYDINSGR-RLQVFADMHKEHINVVKFSNHSPSIFATSSF--DQDVKLWDL 623 (793)
Q Consensus 574 ---------------------------I~IWDl~tg~-~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~--Dg~IrIWDl 623 (793)
+-|+.++... ++..+. -...|...+|-|.|.++.+..+. ..++.+|-+
T Consensus 400 hWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~ve--lke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~ 477 (698)
T KOG2314|consen 400 HWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVE--LKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAV 477 (698)
T ss_pred EeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeee--cchheeeeeeccCCCeEEEEEccccccceeEEEe
Confidence 2222222211 111221 34567788999999443333333 356899988
Q ss_pred CCC--CccceEEccCCCCeEEEEEecCCCEEEEEe---CCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCCCeEE
Q 003822 624 RQK--PIQPCYTASSSKGNVMVCFSPDDHYLLVSA---VDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNGRDYI 698 (793)
Q Consensus 624 rt~--~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs---~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg~~~L 698 (793)
.+. +...+..+.. .....+.|+|.|+++++++ ..|.+..+|+....+..+- ...+.....+-|.|.|+ |+
T Consensus 478 e~~~~~~~lVk~~dk-~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~---~~eh~~at~veWDPtGR-Yv 552 (698)
T KOG2314|consen 478 ETNIKKPSLVKELDK-KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTA---SPEHFAATEVEWDPTGR-YV 552 (698)
T ss_pred ecCCCchhhhhhhcc-cccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhcc---CccccccccceECCCCC-EE
Confidence 743 2222333332 3334699999999998875 4688999998753332111 12344566788999999 99
Q ss_pred EEEeCCCcEEEEEEcCCCcEEEeeeecCCC
Q 003822 699 VSGSCDEHVVRICCAQTGRRLRDISLEGKG 728 (793)
Q Consensus 699 ~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~ 728 (793)
++++.-.+. .+..|-.+. ++.|.-
T Consensus 553 vT~ss~wrh----k~d~GYri~--tfqGrl 576 (698)
T KOG2314|consen 553 VTSSSSWRH----KVDNGYRIF--TFQGRL 576 (698)
T ss_pred EEeeehhhh----ccccceEEE--EeecHH
Confidence 998865544 455666666 666653
No 291
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=2.6e-06 Score=92.21 Aligned_cols=241 Identities=15% Similarity=0.160 Sum_probs=162.8
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEE-EeccCCCCCEEEEEEeeCCCCEEEEEEc-CCcEEEEEcCCCCCc-ccccccC
Q 003822 465 ISCLMVFGTLDGEIVVVNHENENIVSY-IPSFGAMNSVLGLCWLKKYPSKLIAGSD-NGSLKLYDIRHMPPS-IRGMHYG 541 (793)
Q Consensus 465 d~~~Lasgs~DG~I~VWd~~t~~~i~~-l~~~~h~~~V~sv~fs~~~g~~Lasgs~-DgtV~vWDl~~~~~~-~~~~~~~ 541 (793)
-.+++.+++.||.++.|.-..-.-+.. .....|-+.|.+++-+ .++.++.|++. |..++++|+++-... ...+...
T Consensus 19 ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S-~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~l 97 (558)
T KOG0882|consen 19 KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVS-YDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDL 97 (558)
T ss_pred hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhcc-ccceeEeeccCcccceeEEEeeccchhhhcccccC
Confidence 457999999999999998643122211 1223677888888865 78888999887 999999999875542 1111111
Q ss_pred CceeEecCCCCeEEEEEccCC---CEEEEEE-CCCcEEEEECCCCc-EEEEEcccCCCCeEEEEEcCCCCcEEEEEeCCC
Q 003822 542 AGTVTFDEFDQLTSVHVNSMD---ELFLASG-YSKNIALYDINSGR-RLQVFADMHKEHINVVKFSNHSPSIFATSSFDQ 616 (793)
Q Consensus 542 ~~~~~~~~~~~V~sv~~s~~~---~~lla~g-~Dg~I~IWDl~tg~-~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~Dg 616 (793)
. +.+..+ . ..+ ..++++. .+|.+.++|-.... +..-+..-|..+|..+.++|.+ ..+++....|
T Consensus 98 P--------g~a~wv-~-skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~-Ds~vSiD~~g 166 (558)
T KOG0882|consen 98 P--------GFAEWV-T-SKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAG-DSAVSIDISG 166 (558)
T ss_pred C--------CceEEe-c-CCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccc-cceeeccccc
Confidence 1 111111 1 222 1333333 47999999987543 4455555799999999999998 7888888899
Q ss_pred eEEEEECCCC----CccceEEc----------cCCCCeEEEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeec---
Q 003822 617 DVKLWDLRQK----PIQPCYTA----------SSSKGNVMVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITA--- 679 (793)
Q Consensus 617 ~IrIWDlrt~----~~~~~~~l----------~~~~~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~--- 679 (793)
.|.-|..... .....+.+ .....+.++.|+|+|..+.+-+.|..|++++..+|++++.++-..
T Consensus 167 mVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~ 246 (558)
T KOG0882|consen 167 MVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDA 246 (558)
T ss_pred eeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhh
Confidence 9999988731 00111111 122234579999999999999999999999999998765443211
Q ss_pred ---------------------------CCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEE
Q 003822 680 ---------------------------TGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRLR 720 (793)
Q Consensus 680 ---------------------------~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~ 720 (793)
.+......+.|...|. +|+-|+-=| | +|.++.+++..+
T Consensus 247 ~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~-flly~t~~g-i-kvin~~tn~v~r 311 (558)
T KOG0882|consen 247 QYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGN-FLLYGTILG-I-KVINLDTNTVVR 311 (558)
T ss_pred hhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCC-EEEeeccee-E-EEEEeecCeEEE
Confidence 1112234556777777 888877665 4 899999999887
No 292
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.42 E-value=1.6e-06 Score=88.12 Aligned_cols=149 Identities=17% Similarity=0.248 Sum_probs=96.4
Q ss_pred CCCEEEEEeCCCeEEEEECCCCe-EEEEEeccCCCCCEEEEEEeeCCCCEEEEEE-----cCCcEEEEEcCCCCCccccc
Q 003822 465 ISCLMVFGTLDGEIVVVNHENEN-IVSYIPSFGAMNSVLGLCWLKKYPSKLIAGS-----DNGSLKLYDIRHMPPSIRGM 538 (793)
Q Consensus 465 d~~~Lasgs~DG~I~VWd~~t~~-~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs-----~DgtV~vWDl~~~~~~~~~~ 538 (793)
.++.+++|..||.+.+++.+.-. ....++. .|.+ -.+.++. ..++.+.++. .-+..+.|+++..+....
T Consensus 100 ~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~-~~~~-~as~~~~-~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~-- 174 (319)
T KOG4714|consen 100 TDNRVCIGYADGSLAVFSTDKDLALMSRIPS-IHSG-SASRKIC-RHGNSILSGGCGNWNAQDNFYANTLDPIKTLIP-- 174 (319)
T ss_pred cCCceEecCCCceEEEEechHHHhhhhhccc-cccc-cccccee-ecccEEecCCcceEeeccceeeecccccccccc--
Confidence 35679999999999999987521 1111111 1111 1112222 2333443332 223455666654332111
Q ss_pred ccCCceeEecCCCCeEEEEEccCCCEEEEEE-CCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeCCCe
Q 003822 539 HYGAGTVTFDEFDQLTSVHVNSMDELFLASG-YSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQD 617 (793)
Q Consensus 539 ~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g-~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~Dg~ 617 (793)
.....+.|.+++-+|..+.++++| .||.+-+||.+.......+..+|+.+++.|-|+|..|..|++++.||.
T Consensus 175 -------~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGs 247 (319)
T KOG4714|consen 175 -------SKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGS 247 (319)
T ss_pred -------cccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCc
Confidence 111224488899888877776666 689999999998755444434799999999999999999999999999
Q ss_pred EEEEECCC
Q 003822 618 VKLWDLRQ 625 (793)
Q Consensus 618 IrIWDlrt 625 (793)
+..||..+
T Consensus 248 lw~wdas~ 255 (319)
T KOG4714|consen 248 LWHWDAST 255 (319)
T ss_pred EEEEcCCC
Confidence 99999876
No 293
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.38 E-value=2e-07 Score=107.15 Aligned_cols=206 Identities=15% Similarity=0.142 Sum_probs=143.7
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCC--cEEEEEcCCCCC
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNG--SLKLYDIRHMPP 533 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~Dg--tV~vWDl~~~~~ 533 (793)
-+|++|+- +.+.|+.|+..|.|+++++.+|....... +|..+|+.+.=+ .+|..+++.+.-. -..+|++...-.
T Consensus 1104 fTc~afs~-~~~hL~vG~~~Geik~~nv~sG~~e~s~n--cH~SavT~vePs-~dgs~~Ltsss~S~PlsaLW~~~s~~~ 1179 (1516)
T KOG1832|consen 1104 FTCIAFSG-GTNHLAVGSHAGEIKIFNVSSGSMEESVN--CHQSAVTLVEPS-VDGSTQLTSSSSSSPLSALWDASSTGG 1179 (1516)
T ss_pred eeeEEeec-CCceEEeeeccceEEEEEccCcccccccc--cccccccccccc-CCcceeeeeccccCchHHHhccccccC
Confidence 68999999 88999999999999999999999887766 899999999865 6777766654332 467999876211
Q ss_pred cccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcc---cCCCCeEEEEEcCCCCcEEE
Q 003822 534 SIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFAD---MHKEHINVVKFSNHSPSIFA 610 (793)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~---gh~~~V~sv~fspdg~~~La 610 (793)
. ..+| ..-.++.|+.....-+.|.....+.+||+.++.++.++-. +.+..-+++.|+|.. .+++
T Consensus 1180 ~---------~Hsf---~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D-~LIl 1246 (1516)
T KOG1832|consen 1180 P---------RHSF---DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCD-TLIL 1246 (1516)
T ss_pred c---------cccc---cccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCc-ceEe
Confidence 1 1122 3345677755544445555567789999999988777431 122333678999998 5554
Q ss_pred EEeCCCeEEEEECCCCCccceEEccCCCCeEEEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEE
Q 003822 611 TSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSY 690 (793)
Q Consensus 611 Tgs~Dg~IrIWDlrt~~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~af 690 (793)
.|| .+||.|.. ..+..+..-.....-.|+|.|..++.-+ -|||+++-++++... .-....+.|
T Consensus 1247 ---ndG--vLWDvR~~--~aIh~FD~ft~~~~G~FHP~g~eVIINS-----EIwD~RTF~lLh~VP-----~Ldqc~VtF 1309 (1516)
T KOG1832|consen 1247 ---NDG--VLWDVRIP--EAIHRFDQFTDYGGGGFHPSGNEVIINS-----EIWDMRTFKLLHSVP-----SLDQCAVTF 1309 (1516)
T ss_pred ---eCc--eeeeeccH--HHHhhhhhheecccccccCCCceEEeec-----hhhhhHHHHHHhcCc-----cccceEEEe
Confidence 355 47999987 3344433322222357999999999877 589999988766552 223445677
Q ss_pred eeCCC
Q 003822 691 YLNGR 695 (793)
Q Consensus 691 spdg~ 695 (793)
...|.
T Consensus 1310 NstG~ 1314 (1516)
T KOG1832|consen 1310 NSTGD 1314 (1516)
T ss_pred ccCcc
Confidence 77776
No 294
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.37 E-value=0.00027 Score=78.14 Aligned_cols=242 Identities=11% Similarity=0.051 Sum_probs=151.2
Q ss_pred eEEEEEeCCCCCEEEEEeCCC---------------eEEEEECCCCeEEEEEeccCCCCCEE-EEEEeeCCCCEEEEEEc
Q 003822 456 PRQFEYHPSISCLMVFGTLDG---------------EIVVVNHENENIVSYIPSFGAMNSVL-GLCWLKKYPSKLIAGSD 519 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG---------------~I~VWd~~t~~~i~~l~~~~h~~~V~-sv~fs~~~g~~Lasgs~ 519 (793)
|+-+.|+| .+++|++-+..+ .+.|||..+|..+..+.........+ -+.|+ .+..++|-..
T Consensus 74 V~~~~fSP-~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s-~~D~y~ARvv- 150 (561)
T COG5354 74 VKYLDFSP-NEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFS-IDDKYVARVV- 150 (561)
T ss_pred ceecccCc-ccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeee-ecchhhhhhc-
Confidence 78899999 899999866433 49999999999998887544443345 56776 5666555442
Q ss_pred CCcEEEEEcCCCCCcccccccCCceeEecCCCCeEEEEEccCCC--EEEEE-----ECCCcEEEEECCCCcEEEEEcccC
Q 003822 520 NGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDE--LFLAS-----GYSKNIALYDINSGRRLQVFADMH 592 (793)
Q Consensus 520 DgtV~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~--~lla~-----g~Dg~I~IWDl~tg~~l~~~~~gh 592 (793)
...++|+++ +........ .--....|....++|.++ .++.- +.++.+++|.+..++.+.+-. -.
T Consensus 151 ~~sl~i~e~-t~n~~~~p~-------~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~-lf 221 (561)
T COG5354 151 GSSLYIHEI-TDNIEEHPF-------KNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKN-LF 221 (561)
T ss_pred cCeEEEEec-CCccccCch-------hhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeee-eE
Confidence 347999997 433211100 001124577777877632 23332 357899999999777665443 12
Q ss_pred CCCeEEEEEcCCCCcEEEEEeC----------CCeEEEEECCCCCccceEEccCCCCeEEEEEecCCCEEEEEe--CCCe
Q 003822 593 KEHINVVKFSNHSPSIFATSSF----------DQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLVSA--VDNE 660 (793)
Q Consensus 593 ~~~V~sv~fspdg~~~LaTgs~----------Dg~IrIWDlrt~~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs--~Dg~ 660 (793)
...=..+.|++.|..+++-.-. ...+.+++++.... ++.. .....+...+|.|.++.+++.+ .+..
T Consensus 222 k~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i-~V~~-~~~~pVhdf~W~p~S~~F~vi~g~~pa~ 299 (561)
T COG5354 222 KVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSI-PVEK-DLKDPVHDFTWEPLSSRFAVISGYMPAS 299 (561)
T ss_pred eecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeeccccc-ceec-cccccceeeeecccCCceeEEecccccc
Confidence 2333468899888433322111 24578888875432 2222 2223444699999988776655 6778
Q ss_pred EEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCCCeEEEEEeCC---CcEEEEEEcCCCcEE
Q 003822 661 VRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNGRDYIVSGSCD---EHVVRICCAQTGRRL 719 (793)
Q Consensus 661 I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~D---g~II~IWDv~tg~~l 719 (793)
+.++|++.. +...+ ....-..+.|+|.++ +++.++-| |.+ -+||......+
T Consensus 300 ~s~~~lr~N-l~~~~-----Pe~~rNT~~fsp~~r-~il~agF~nl~gni-~i~~~~~rf~~ 353 (561)
T COG5354 300 VSVFDLRGN-LRFYF-----PEQKRNTIFFSPHER-YILFAGFDNLQGNI-EIFDPAGRFKV 353 (561)
T ss_pred eeecccccc-eEEec-----CCcccccccccCccc-EEEEecCCccccce-EEeccCCceEE
Confidence 999998765 43332 233445788999999 77776554 678 99998665443
No 295
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.36 E-value=4.5e-05 Score=79.18 Aligned_cols=201 Identities=17% Similarity=0.200 Sum_probs=118.7
Q ss_pred EEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEec-----cCCCCCEEEEEEeeCC-----CCEEEEEEcCCcEEEE
Q 003822 457 RQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPS-----FGAMNSVLGLCWLKKY-----PSKLIAGSDNGSLKLY 526 (793)
Q Consensus 457 ~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~-----~~h~~~V~sv~fs~~~-----g~~Lasgs~DgtV~vW 526 (793)
+.++|+| |+.+||.+...|+|+++|+... .+..++. ..-..+|.++.|.+.. ...|++-..+|.++-|
T Consensus 47 Rkl~WSp-D~tlLa~a~S~G~i~vfdl~g~-~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy 124 (282)
T PF15492_consen 47 RKLAWSP-DCTLLAYAESTGTIRVFDLMGS-ELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSY 124 (282)
T ss_pred eEEEECC-CCcEEEEEcCCCeEEEEecccc-eeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeE
Confidence 6799999 9999999999999999998753 3333332 1124578888886443 2357777788888888
Q ss_pred EcCCCCCcccccccCCceeEe--cCCCCeEEEEEccCCCEEEEEECCCc-EEEEECCCCcEEEEEcccCCCCeEEEEEcC
Q 003822 527 DIRHMPPSIRGMHYGAGTVTF--DEFDQLTSVHVNSMDELFLASGYSKN-IALYDINSGRRLQVFADMHKEHINVVKFSN 603 (793)
Q Consensus 527 Dl~~~~~~~~~~~~~~~~~~~--~~~~~V~sv~~s~~~~~lla~g~Dg~-I~IWDl~tg~~l~~~~~gh~~~V~sv~fsp 603 (793)
-+..+... .....| .+.+ .....|.++.++|..+.++++|.... -..+. +....+++-..-.
T Consensus 125 ~vs~gt~q-~y~e~h--sfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~------------a~~~GLtaWRiL~ 189 (282)
T PF15492_consen 125 LVSVGTNQ-GYQENH--SFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSK------------ASSCGLTAWRILS 189 (282)
T ss_pred EEEcccCC-cceeeE--EEEecccCCCceeEEEEcCCCCEEEEeccCCCCCcccc------------ccccCceEEEEcC
Confidence 76432210 000001 1222 23467999999999999999885321 00000 1112222222222
Q ss_pred CCCcEE-EEEeCCCe------EEEEECCCCCccceEE--ccCCCCeEEEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEE
Q 003822 604 HSPSIF-ATSSFDQD------VKLWDLRQKPIQPCYT--ASSSKGNVMVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLN 674 (793)
Q Consensus 604 dg~~~L-aTgs~Dg~------IrIWDlrt~~~~~~~~--l~~~~~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~ 674 (793)
+.|.+. ++...|+. -.+|.+-+ ...+. ......+..+..||||..||+...+|.|.+|++.+-++...
T Consensus 190 ~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~---~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~ 266 (282)
T PF15492_consen 190 DSPYYKQVTSSEDDITASSKRRGLLRIPS---FKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRS 266 (282)
T ss_pred CCCcEEEccccCccccccccccceeeccc---eeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcc
Confidence 222221 12221211 12222221 11111 22345666799999999999999999999999998887766
Q ss_pred Eee
Q 003822 675 FGI 677 (793)
Q Consensus 675 l~~ 677 (793)
+..
T Consensus 267 W~~ 269 (282)
T PF15492_consen 267 WKQ 269 (282)
T ss_pred cch
Confidence 643
No 296
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.36 E-value=4.8e-06 Score=89.43 Aligned_cols=157 Identities=13% Similarity=0.125 Sum_probs=105.4
Q ss_pred CCCCEEEEEEcCCcEEEEEcCCCCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEE---CCCcEEEEECCCCcEE
Q 003822 509 KYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASG---YSKNIALYDINSGRRL 585 (793)
Q Consensus 509 ~~g~~Lasgs~DgtV~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g---~Dg~I~IWDl~tg~~l 585 (793)
+.+.++|.+..+....++++.......+ ....+.....-+++.+...+...+++- ....+.+|....+.+.
T Consensus 72 ~~~~llAv~~~~K~~~~f~~~~~~~~~k------l~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~ 145 (390)
T KOG3914|consen 72 DSGRLVAVATSSKQRAVFDYRENPKGAK------LLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRCE 145 (390)
T ss_pred CCceEEEEEeCCCceEEEEEecCCCcce------eeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCcc
Confidence 5677777777777777777766443111 011222223334555555555555554 3456666666655544
Q ss_pred EEEcccCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEECCCCCccceEEccCCCCeEE-EEEecCCCEEEEEeCCCeEEEE
Q 003822 586 QVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVM-VCFSPDDHYLLVSAVDNEVRQL 664 (793)
Q Consensus 586 ~~~~~gh~~~V~sv~fspdg~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~~~~vs-v~fSpdg~~Lasgs~Dg~I~Iw 664 (793)
-.+ ||-..++.|+|+||+ ++++|+..|..||+-..........+. -||...++ ++.-+ +..|++|+.|+++++|
T Consensus 146 ~~l--GhvSml~dVavS~D~-~~IitaDRDEkIRvs~ypa~f~Iesfc-lGH~eFVS~isl~~-~~~LlS~sGD~tlr~W 220 (390)
T KOG3914|consen 146 PIL--GHVSMLLDVAVSPDD-QFIITADRDEKIRVSRYPATFVIESFC-LGHKEFVSTISLTD-NYLLLSGSGDKTLRLW 220 (390)
T ss_pred hhh--hhhhhhheeeecCCC-CEEEEecCCceEEEEecCcccchhhhc-cccHhheeeeeecc-CceeeecCCCCcEEEE
Confidence 444 699999999999999 899999999999997765542222222 25666665 77665 4558999999999999
Q ss_pred EcCCCcEEEEEe
Q 003822 665 LAVDGRVHLNFG 676 (793)
Q Consensus 665 Dl~tg~~~~~l~ 676 (793)
|+.+|+.+.++.
T Consensus 221 d~~sgk~L~t~d 232 (390)
T KOG3914|consen 221 DITSGKLLDTCD 232 (390)
T ss_pred ecccCCcccccc
Confidence 999999887664
No 297
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=1.5e-05 Score=85.63 Aligned_cols=241 Identities=17% Similarity=0.203 Sum_probs=142.9
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcc
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSI 535 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~ 535 (793)
|+.++|+|....++..++.+..|+|.|+++...+.... .+ ..+++++|--.+.++++.|...|.|.+||++..+..+
T Consensus 196 IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~--a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~~~~ 272 (463)
T KOG1645|consen 196 IRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYI--AY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPEGPL 272 (463)
T ss_pred hhhhccCccccceeeeeccCceEEEEecccceeeehee--cc-CCceeeeeccCCcceeEEeccCceEEEEEccCCCchH
Confidence 89999999666689999999999999999988877765 34 7899999976667889999999999999999866543
Q ss_pred cccccCCceeEecCCCCeEEEEEc------cCCCEEEEEECCCcEEEEECCC--CcEEEEEcccCCCCeEEEEEcCCCCc
Q 003822 536 RGMHYGAGTVTFDEFDQLTSVHVN------SMDELFLASGYSKNIALYDINS--GRRLQVFADMHKEHINVVKFSNHSPS 607 (793)
Q Consensus 536 ~~~~~~~~~~~~~~~~~V~sv~~s------~~~~~lla~g~Dg~I~IWDl~t--g~~l~~~~~gh~~~V~sv~fspdg~~ 607 (793)
........ ..+|..++.- +.++.++.+..+ +..|.+.- +....+.+-+..+...++++++....
T Consensus 273 ~e~~a~~t------~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy~~~snh 344 (463)
T KOG1645|consen 273 MELVANVT------INPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQYHGVSNH 344 (463)
T ss_pred hhhhhhhc------cCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeeecCccce
Confidence 33322111 1223333322 334444444332 44565542 22333333234667777788776645
Q ss_pred EEEEEeCCCe------EEE-EECCCCCccceEE-ccCC----CCeE----EEEEecCCCEEEE-EeCCCeEEEEEcCCCc
Q 003822 608 IFATSSFDQD------VKL-WDLRQKPIQPCYT-ASSS----KGNV----MVCFSPDDHYLLV-SAVDNEVRQLLAVDGR 670 (793)
Q Consensus 608 ~LaTgs~Dg~------IrI-WDlrt~~~~~~~~-l~~~----~~~v----sv~fSpdg~~Las-gs~Dg~I~IwDl~tg~ 670 (793)
.++|.-.+.+ |-. -|-+.+. ++.. -.++ .... .+.-.++..+|+. |...+.+.+||..++.
T Consensus 345 ~l~tyRs~pn~p~~r~il~~~d~~dG~--pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s~e 422 (463)
T KOG1645|consen 345 LLLTYRSNPNFPQSRFILGRIDFRDGF--PVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHSFE 422 (463)
T ss_pred EEEEecCCCCCccceeeeeeeccccCc--eeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccchhh
Confidence 5655444211 111 1111221 1110 0001 0000 1222345565554 3445789999999999
Q ss_pred EEEEEeeecCCCCCcEEEEEe-eCCCeEEEEEeCCCcEEEEEEcCC
Q 003822 671 VHLNFGITATGSSQNYTRSYY-LNGRDYIVSGSCDEHVVRICCAQT 715 (793)
Q Consensus 671 ~~~~l~~~~~~~~~v~s~afs-pdg~~~L~Sgs~Dg~II~IWDv~t 715 (793)
.++++.. ...+..+... -+|..||++-.+| .+ +|+..++
T Consensus 423 vvQ~l~~----~epv~Dicp~~~n~~syLa~LTd~-~v-~Iyk~es 462 (463)
T KOG1645|consen 423 VVQTLAL----SEPVLDICPNDTNGSSYLALLTDD-RV-HIYKNES 462 (463)
T ss_pred eeeeccc----CcceeecceeecCCcchhhheecc-eE-EEEecCC
Confidence 9988863 3455555543 3555467666544 66 7876543
No 298
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.32 E-value=0.00012 Score=81.33 Aligned_cols=287 Identities=13% Similarity=0.066 Sum_probs=168.0
Q ss_pred cccceEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEc-----------C
Q 003822 452 RSFRPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSD-----------N 520 (793)
Q Consensus 452 ~~~~V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~-----------D 520 (793)
.++.-+-+.||| .|.+|+|--..| |.+|--++-..++.+ .|+ .|.-+.|+ |..++|+|=+. .
T Consensus 209 enWTetyv~wSP-~GTYL~t~Hk~G-I~lWGG~~f~r~~RF---~Hp-~Vq~idfS-P~EkYLVT~s~~p~~~~~~d~e~ 281 (698)
T KOG2314|consen 209 ENWTETYVRWSP-KGTYLVTFHKQG-IALWGGESFDRIQRF---YHP-GVQFIDFS-PNEKYLVTYSPEPIIVEEDDNEG 281 (698)
T ss_pred hcceeeeEEecC-CceEEEEEeccc-eeeecCccHHHHHhc---cCC-CceeeecC-CccceEEEecCCccccCcccCCC
Confidence 344557799999 999999998877 889976655555444 565 48889998 78899998543 2
Q ss_pred CcEEEEEcCCCCCcccccccCCceeEecCCCCeE-EEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEE
Q 003822 521 GSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLT-SVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVV 599 (793)
Q Consensus 521 gtV~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~-sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv 599 (793)
..+.|||+.+|.....-. .+.....++ -..|+.++.+++.- ...+|.||+..+..++-.-. ..-..|...
T Consensus 282 ~~l~IWDI~tG~lkrsF~-------~~~~~~~~WP~frWS~DdKy~Arm-~~~sisIyEtpsf~lld~Ks-lki~gIr~F 352 (698)
T KOG2314|consen 282 QQLIIWDIATGLLKRSFP-------VIKSPYLKWPIFRWSHDDKYFARM-TGNSISIYETPSFMLLDKKS-LKISGIRDF 352 (698)
T ss_pred ceEEEEEccccchhccee-------ccCCCccccceEEeccCCceeEEe-ccceEEEEecCceeeecccc-cCCccccCc
Confidence 579999999987522111 111111222 34665555555444 44789999988744432222 244678888
Q ss_pred EEcCCCCcEEEEEeC-----CCeEEEEECCCCCccceEEccCCCCeEEEEEecCCCEEEEEeC-------CC---eEEEE
Q 003822 600 KFSNHSPSIFATSSF-----DQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLVSAV-------DN---EVRQL 664 (793)
Q Consensus 600 ~fspdg~~~LaTgs~-----Dg~IrIWDlrt~~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs~-------Dg---~I~Iw 664 (793)
.|+|.+ ++||-=+. -..+.+-.+.+++......+.. -....+-|..+|.+|+.--. .| .+.|+
T Consensus 353 swsP~~-~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfn-VsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIf 430 (698)
T KOG2314|consen 353 SWSPTS-NLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFN-VSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIF 430 (698)
T ss_pred ccCCCc-ceEEEEcccccCCcceEEEEecCccceeeecccee-eeccEEEeccCCcEEEEEEEeeccccccceEeeEEEE
Confidence 999987 67764322 1234444444432221111110 11123788899999886431 11 23445
Q ss_pred EcCCCcE-EEEEeeecCCCCCcEEEEEeeCCCeEEEEEeCC--CcEEEEEEcCC-CcEEEeeeecCCCCCccceeeeccC
Q 003822 665 LAVDGRV-HLNFGITATGSSQNYTRSYYLNGRDYIVSGSCD--EHVVRICCAQT-GRRLRDISLEGKGSGTSMFVQSLRG 740 (793)
Q Consensus 665 Dl~tg~~-~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~D--g~II~IWDv~t-g~~l~~~~L~gh~~~~s~~v~sl~g 740 (793)
.++.... +... .-...+...+|-|.|..+.+..+.+ .++ .+|.+++ +.... .|..+.-
T Consensus 431 rireKdIpve~v----elke~vi~FaWEP~gdkF~vi~g~~~k~tv-sfY~~e~~~~~~~-------------lVk~~dk 492 (698)
T KOG2314|consen 431 RIREKDIPVEVV----ELKESVIAFAWEPHGDKFAVISGNTVKNTV-SFYAVETNIKKPS-------------LVKELDK 492 (698)
T ss_pred EeeccCCCceee----ecchheeeeeeccCCCeEEEEEccccccce-eEEEeecCCCchh-------------hhhhhcc
Confidence 4443322 2222 2345678889999998554444433 255 8887764 21111 1111110
Q ss_pred CccccCCccEEEEEEcCCCCceeeEeeEEEeCCCcEEEEcCCC
Q 003822 741 DPFRDFNMSILAAYTRPSSKSEIVKVNLLASTDHCDKECSHGQ 783 (793)
Q Consensus 741 ~~~~~h~~~V~sva~~P~~~~~iv~~~ltaS~Dg~VkvW~~~~ 783 (793)
...+.+.|+|.++..++ +.+ +|..|.+...+.+.
T Consensus 493 -------~~~N~vfwsPkG~fvvv-a~l-~s~~g~l~F~D~~~ 526 (698)
T KOG2314|consen 493 -------KFANTVFWSPKGRFVVV-AAL-VSRRGDLEFYDTDY 526 (698)
T ss_pred -------cccceEEEcCCCcEEEE-EEe-cccccceEEEecch
Confidence 24677999998777666 333 45788888887764
No 299
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.32 E-value=0.00046 Score=77.95 Aligned_cols=228 Identities=13% Similarity=0.012 Sum_probs=142.5
Q ss_pred CCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCC--------CE-EEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCccc
Q 003822 466 SCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMN--------SV-LGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIR 536 (793)
Q Consensus 466 ~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~--------~V-~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~~ 536 (793)
+..+++++.+|.+.-+|..+|+.+.......... .+ ..+.. .+..++.++.+|.+..+|.++++...+
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v---~~~~v~v~~~~g~l~ald~~tG~~~W~ 145 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV---AGGKVYIGSEKGQVYALNAEDGEVAWQ 145 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE---ECCEEEEEcCCCEEEEEECCCCCCccc
Confidence 4578888889999999999999887765432111 01 01121 356778888999999999999887554
Q ss_pred ccccCCceeEecCCCCeEE-EEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCC----eEEEEEcCCCCcEEEE
Q 003822 537 GMHYGAGTVTFDEFDQLTS-VHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEH----INVVKFSNHSPSIFAT 611 (793)
Q Consensus 537 ~~~~~~~~~~~~~~~~V~s-v~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~----V~sv~fspdg~~~LaT 611 (793)
..... .+.+ ..+ .++.++++..++.+..+|..+|+.+..+....... ..+-... ++ .++.
T Consensus 146 ~~~~~----------~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~-~~--~v~~ 210 (394)
T PRK11138 146 TKVAG----------EALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATA-FG--GAIV 210 (394)
T ss_pred ccCCC----------ceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEE-CC--EEEE
Confidence 33211 1111 111 35677777789999999999999998876211100 0011111 22 4666
Q ss_pred EeCCCeEEEEECCCCCccceEEccCCCC------eEEEEEec--CCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCC
Q 003822 612 SSFDQDVKLWDLRQKPIQPCYTASSSKG------NVMVCFSP--DDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGSS 683 (793)
Q Consensus 612 gs~Dg~IrIWDlrt~~~~~~~~l~~~~~------~vsv~fSp--dg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~ 683 (793)
++.+|.+..+|..+++..-........+ ...+.-+| .+..+++++.+|.+..+|..+|+.+-+... ..
T Consensus 211 ~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~---~~- 286 (394)
T PRK11138 211 GGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREY---GS- 286 (394)
T ss_pred EcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecC---CC-
Confidence 7788999999998874332221111100 00011222 356677788899999999999987655432 11
Q ss_pred CcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEE
Q 003822 684 QNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRLR 720 (793)
Q Consensus 684 ~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~ 720 (793)
.... ...+. .|+.++.+|.+ ..+|..+|+.+.
T Consensus 287 -~~~~--~~~~~-~vy~~~~~g~l-~ald~~tG~~~W 318 (394)
T PRK11138 287 -VNDF--AVDGG-RIYLVDQNDRV-YALDTRGGVELW 318 (394)
T ss_pred -ccCc--EEECC-EEEEEcCCCeE-EEEECCCCcEEE
Confidence 1111 22344 67778889999 999999999887
No 300
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.26 E-value=0.00061 Score=70.58 Aligned_cols=190 Identities=16% Similarity=0.137 Sum_probs=123.2
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcccc-cccCCc
Q 003822 465 ISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRG-MHYGAG 543 (793)
Q Consensus 465 d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~~~-~~~~~~ 543 (793)
++..+++++.++.|..||..+|+.+......+..... .. ..+..++.++.++.+..+|..+++..... ......
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~--~~---~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~ 109 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGA--PV---VDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPP 109 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSG--EE---EETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccce--ee---ecccccccccceeeeEecccCCcceeeeeccccccc
Confidence 4467777889999999999999998877753321222 11 24567777778889999999998875542 211000
Q ss_pred eeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCC----------eEEEEEcCCCCcEEEEEe
Q 003822 544 TVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEH----------INVVKFSNHSPSIFATSS 613 (793)
Q Consensus 544 ~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~----------V~sv~fspdg~~~LaTgs 613 (793)
.. ........+ .++.++++..++.|..+|+.+|+.+..... .... +..-....++ .+..++
T Consensus 110 -~~---~~~~~~~~~--~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~ 180 (238)
T PF13360_consen 110 -AG---VRSSSSPAV--DGDRLYVGTSSGKLVALDPKTGKLLWKYPV-GEPRGSSPISSFSDINGSPVISDG--RVYVSS 180 (238)
T ss_dssp -CS---TB--SEEEE--ETTEEEEEETCSEEEEEETTTTEEEEEEES-STT-SS--EEEETTEEEEEECCTT--EEEEEC
T ss_pred -cc---cccccCceE--ecCEEEEEeccCcEEEEecCCCcEEEEeec-CCCCCCcceeeecccccceEEECC--EEEEEc
Confidence 00 001112222 478888888899999999999999988873 3322 1222222234 555666
Q ss_pred CCCe-EEEEECCCCCccceEEccCCCCeEEEEEecCCCEEEEEeCCCeEEEEEcCCCcEEE
Q 003822 614 FDQD-VKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHL 673 (793)
Q Consensus 614 ~Dg~-IrIWDlrt~~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~ 673 (793)
.++. +.+ |+.+++. ..... ... ......+++..|++++.++.+..||+.+|+.+-
T Consensus 181 ~~g~~~~~-d~~tg~~--~w~~~-~~~-~~~~~~~~~~~l~~~~~~~~l~~~d~~tG~~~W 236 (238)
T PF13360_consen 181 GDGRVVAV-DLATGEK--LWSKP-ISG-IYSLPSVDGGTLYVTSSDGRLYALDLKTGKVVW 236 (238)
T ss_dssp CTSSEEEE-ETTTTEE--EEEEC-SS--ECECEECCCTEEEEEETTTEEEEEETTTTEEEE
T ss_pred CCCeEEEE-ECCCCCE--EEEec-CCC-ccCCceeeCCEEEEEeCCCEEEEEECCCCCEEe
Confidence 6665 555 9999852 23333 122 222256788889998899999999999998754
No 301
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.25 E-value=3.3e-05 Score=89.32 Aligned_cols=181 Identities=15% Similarity=0.183 Sum_probs=123.4
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcc
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSI 535 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~ 535 (793)
++|++++. +.++.|+.+|.|++++... .....+ .|... ..+|.++++|+.||+|.|-.+-+.+.
T Consensus 42 is~~av~~---~~~~~GtH~g~v~~~~~~~-~~~~~~---~~s~~-------~~~Gey~asCS~DGkv~I~sl~~~~~-- 105 (846)
T KOG2066|consen 42 ISCCAVHD---KFFALGTHRGAVYLTTCQG-NPKTNF---DHSSS-------ILEGEYVASCSDDGKVVIGSLFTDDE-- 105 (846)
T ss_pred HHHHHhhc---ceeeeccccceEEEEecCC-cccccc---ccccc-------ccCCceEEEecCCCcEEEeeccCCcc--
Confidence 66777766 8999999999999999763 332222 44443 35799999999999999998887654
Q ss_pred cccccCCceeEecCCCCeEEEEEccC-----CCEEEEEECCCcEEEEECCC-CcEEE-EEcccCCCCeEEEEEcCCCCcE
Q 003822 536 RGMHYGAGTVTFDEFDQLTSVHVNSM-----DELFLASGYSKNIALYDINS-GRRLQ-VFADMHKEHINVVKFSNHSPSI 608 (793)
Q Consensus 536 ~~~~~~~~~~~~~~~~~V~sv~~s~~-----~~~lla~g~Dg~I~IWDl~t-g~~l~-~~~~gh~~~V~sv~fspdg~~~ 608 (793)
...+....++.+|+++|+ .+.+++||.-| +.++.-+= |.... .+. .-.++|.++.|. | ++
T Consensus 106 --------~~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~-~~eG~I~~i~W~--g-~l 172 (846)
T KOG2066|consen 106 --------ITQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLS-EGEGPIHSIKWR--G-NL 172 (846)
T ss_pred --------ceeEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeee-cCccceEEEEec--C-cE
Confidence 223444577899999887 57888888877 77775442 21111 233 367899999995 4 78
Q ss_pred EEEEeCCCeEEEEECCCCCccceEEccCC-----CCeEEEEEecCCCEEEEEeCCCeEEEEEcCC
Q 003822 609 FATSSFDQDVKLWDLRQKPIQPCYTASSS-----KGNVMVCFSPDDHYLLVSAVDNEVRQLLAVD 668 (793)
Q Consensus 609 LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~-----~~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~t 668 (793)
+|-++.+| |+|||+.+++.......+.. .-+..+.|.++.+ |+.|-. .+|+|..++.
T Consensus 173 IAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~-LVIGW~-d~v~i~~I~~ 234 (846)
T KOG2066|consen 173 IAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDR-LVIGWG-DSVKICSIKK 234 (846)
T ss_pred EEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCe-EEEecC-CeEEEEEEec
Confidence 99999887 89999988643222111110 0111478887655 555554 4688887773
No 302
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.22 E-value=0.00013 Score=83.90 Aligned_cols=240 Identities=13% Similarity=0.115 Sum_probs=162.2
Q ss_pred EEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCC-----------CCEEEEEEcCCcEEE
Q 003822 457 RQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKY-----------PSKLIAGSDNGSLKL 525 (793)
Q Consensus 457 ~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~-----------g~~Lasgs~DgtV~v 525 (793)
.++.|+| .| ++|.|+ ...|.|-|..+-+.+..+. .|...|+.+.|.|.. .-.+|++...|.|.+
T Consensus 19 ~A~Dw~~-~G-LiAygs-hslV~VVDs~s~q~iqsie--~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil 93 (1062)
T KOG1912|consen 19 NAADWSP-SG-LIAYGS-HSLVSVVDSRSLQLIQSIE--LHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIIL 93 (1062)
T ss_pred cccccCc-cc-eEEEec-CceEEEEehhhhhhhhccc--cCccceeEEEeccCCCchhccCccccceeEEeccccCcEEE
Confidence 4678998 44 788777 4578899998888888887 688999999997521 125778888899999
Q ss_pred EEcCCCCCcccccccCCceeEecCCCCeEEEEEccC---C-CEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEE
Q 003822 526 YDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSM---D-ELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKF 601 (793)
Q Consensus 526 WDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~---~-~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~f 601 (793)
||+..+..... .-.+.+++..++|-+. . ..+++-....++.+|+..+|+......- ......|+.+
T Consensus 94 ~d~~~~s~~~~---------l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~y-s~~iLs~f~~ 163 (1062)
T KOG1912|consen 94 VDFVLASVINW---------LSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDY-SHEILSCFRV 163 (1062)
T ss_pred EEehhhhhhhh---------hcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeecccc-CCcceeeeee
Confidence 99987543111 1122356677777542 3 3455556789999999999999988873 4456778999
Q ss_pred cCCCCcEEEEEeCCCeEEEEECCCCC----ccceEEc-cCCCC--------------------e----E--EEEEecCCC
Q 003822 602 SNHSPSIFATSSFDQDVKLWDLRQKP----IQPCYTA-SSSKG--------------------N----V--MVCFSPDDH 650 (793)
Q Consensus 602 spdg~~~LaTgs~Dg~IrIWDlrt~~----~~~~~~l-~~~~~--------------------~----v--sv~fSpdg~ 650 (793)
.|-++..+..-+..|.+-+-+.-... ....+.+ ..|.. . . .++|+|.-+
T Consensus 164 DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~r 243 (1062)
T KOG1912|consen 164 DPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWR 243 (1062)
T ss_pred CCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhh
Confidence 99877777777777776666543210 0001111 01000 0 0 267888776
Q ss_pred EEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCCC-eEEEEEeCCCcEEEEEEcCC
Q 003822 651 YLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNGR-DYIVSGSCDEHVVRICCAQT 715 (793)
Q Consensus 651 ~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg~-~~L~Sgs~Dg~II~IWDv~t 715 (793)
.++-......+.++|+.-..++....+..+ .+--+.+-|+++ ..+.++-.||.+ .+|-.+.
T Consensus 244 n~lfi~~prellv~dle~~~~l~vvpier~---~akfv~vlP~~~rd~LfclH~nG~l-tirvrk~ 305 (1062)
T KOG1912|consen 244 NILFITFPRELLVFDLEYECCLAVVPIERG---GAKFVDVLPDPRRDALFCLHSNGRL-TIRVRKE 305 (1062)
T ss_pred ceEEEEeccceEEEcchhhceeEEEEeccC---CcceeEeccCCCcceEEEEecCCeE-EEEEeec
Confidence 666666678899999988888777765433 233455556543 378899999999 9996554
No 303
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.17 E-value=0.0004 Score=76.85 Aligned_cols=241 Identities=10% Similarity=0.026 Sum_probs=150.8
Q ss_pred cceEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCC------------
Q 003822 454 FRPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNG------------ 521 (793)
Q Consensus 454 ~~V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~Dg------------ 521 (793)
+.+..+.||| .|.+|++....| |.+|.-.....+..+. | ..|..+.|+ |.+++|++=+..+
T Consensus 33 ~p~~~~~~SP-~G~~l~~~~~~~-V~~~~g~~~~~l~~~~---~-~~V~~~~fS-P~~kYL~tw~~~pi~~pe~e~sp~~ 105 (561)
T COG5354 33 WPVAYVSESP-LGTYLFSEHAAG-VECWGGPSKAKLVRFR---H-PDVKYLDFS-PNEKYLVTWSREPIIEPEIEISPFT 105 (561)
T ss_pred cchhheeecC-cchheehhhccc-eEEccccchhheeeee---c-CCceecccC-cccceeeeeccCCccChhhccCCcc
Confidence 4578899999 999999887665 9999988766555553 3 358899997 7899999866543
Q ss_pred ---cEEEEEcCCCCCcccccccCCceeEecCCCCeE-EEEEccCCCEEEEEECCCcEEEEECCCCcE-EEEEcccCCCCe
Q 003822 522 ---SLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLT-SVHVNSMDELFLASGYSKNIALYDINSGRR-LQVFADMHKEHI 596 (793)
Q Consensus 522 ---tV~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~-sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~-l~~~~~gh~~~V 596 (793)
.+.+||+.++........ ... ..-.+ -+.|+-++.+.+-. ....++|+++ ++.. ...+.......|
T Consensus 106 ~~n~~~vwd~~sg~iv~sf~~-~~q------~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~~~p~~~lr~~gi 176 (561)
T COG5354 106 SKNNVFVWDIASGMIVFSFNG-ISQ------PYLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDNIEEHPFKNLRPVGI 176 (561)
T ss_pred ccCceeEEeccCceeEeeccc-cCC------cccccceeeeeecchhhhhh-ccCeEEEEec-CCccccCchhhccccce
Confidence 489999998765211110 000 00012 34554455444333 4567999997 3322 112221123567
Q ss_pred EEEEEcCCCC-cEEEE-----EeCCCeEEEEECCCCCccceEEccCCCCeEEEEEecCCCEEEEEe-----------CCC
Q 003822 597 NVVKFSNHSP-SIFAT-----SSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLVSA-----------VDN 659 (793)
Q Consensus 597 ~sv~fspdg~-~~LaT-----gs~Dg~IrIWDlrt~~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs-----------~Dg 659 (793)
....|+|.+. ..||. .+.++.+++|.+..+......++..- ..+.+.|.+.|++|++-. .+.
T Consensus 177 ~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~-~~~qLkW~~~g~~ll~l~~t~~ksnKsyfges 255 (561)
T COG5354 177 LDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKV-SGVQLKWQVLGKYLLVLVMTHTKSNKSYFGES 255 (561)
T ss_pred eeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEee-cccEEEEecCCceEEEEEEEeeecccceeccc
Confidence 7888888742 23343 56678899999986544433333221 234689999999987632 134
Q ss_pred eEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCCCeEEE-EEeCCCcEEEEEEcCCC
Q 003822 660 EVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNGRDYIV-SGSCDEHVVRICCAQTG 716 (793)
Q Consensus 660 ~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg~~~L~-Sgs~Dg~II~IWDv~tg 716 (793)
.++++++..... .+...-.+.|...+|.|.+..+.+ +|-.+..+ .++|++..
T Consensus 256 nLyl~~~~e~~i----~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~-s~~~lr~N 308 (561)
T COG5354 256 NLYLLRITERSI----PVEKDLKDPVHDFTWEPLSSRFAVISGYMPASV-SVFDLRGN 308 (561)
T ss_pred eEEEEeeccccc----ceeccccccceeeeecccCCceeEEecccccce-eecccccc
Confidence 677887763222 111123567889999998875544 44566677 99998776
No 304
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.16 E-value=9.1e-06 Score=82.73 Aligned_cols=201 Identities=13% Similarity=0.182 Sum_probs=120.3
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEe---------eCCCCEEEEEEcCCcEEEE
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWL---------KKYPSKLIAGSDNGSLKLY 526 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs---------~~~g~~Lasgs~DgtV~vW 526 (793)
++.+.+.- ...|+++..++.+......++.+.....-....++..+.+.+ ...++.+++++.||.+.++
T Consensus 39 ~~~~~~v~--~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~ 116 (319)
T KOG4714|consen 39 LSKVSLSA--EYILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVF 116 (319)
T ss_pred EEEeechh--hheeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEE
Confidence 66666665 346777777777776665444333222111111222222221 1345689999999999999
Q ss_pred EcCCCCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEE-----CCCcEEEEECCCCcEEEEEcccCCCCeEEEEE
Q 003822 527 DIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASG-----YSKNIALYDINSGRRLQVFADMHKEHINVVKF 601 (793)
Q Consensus 527 Dl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g-----~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~f 601 (793)
+.+.......... ... ..-.+.++...++.+.+++ .-+..+.|+++..+....-.. ....|.+++-
T Consensus 117 s~~~~~~~~~~i~----~~~----~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~-~~~~v~~l~~ 187 (319)
T KOG4714|consen 117 STDKDLALMSRIP----SIH----SGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKK-ALDAVTALCS 187 (319)
T ss_pred echHHHhhhhhcc----ccc----ccccccceeecccEEecCCcceEeeccceeeeccccccccccccc-ccccchhhhC
Confidence 9887222111110 000 0011112222333444332 124556666654332221111 2234999999
Q ss_pred cCCCCcEEEEEeCCCeEEEEECCCCCccceEEccCCCCeEE-EEEec-CCCEEEEEeCCCeEEEEEcCC
Q 003822 602 SNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVM-VCFSP-DDHYLLVSAVDNEVRQLLAVD 668 (793)
Q Consensus 602 spdg~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~~~~vs-v~fSp-dg~~Lasgs~Dg~I~IwDl~t 668 (793)
+|...+++++|+.||.+-+||.|.. ..++..+..|...+. +-|+| ++..|++++.||.+.-||..+
T Consensus 188 hp~qq~~v~cgt~dg~~~l~d~rn~-~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 188 HPAQQHLVCCGTDDGIVGLWDARNV-AMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred CcccccEEEEecCCCeEEEEEcccc-cchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 9988788999999999999999986 345555666776665 99999 678999999999999999775
No 305
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.16 E-value=0.0014 Score=68.25 Aligned_cols=237 Identities=13% Similarity=0.096 Sum_probs=135.5
Q ss_pred EEEeCCCCCEEEEEeCCCeEEEEECCCC--eEEEEEeccC-CCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcc
Q 003822 459 FEYHPSISCLMVFGTLDGEIVVVNHENE--NIVSYIPSFG-AMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSI 535 (793)
Q Consensus 459 vafsP~d~~~Lasgs~DG~I~VWd~~t~--~~i~~l~~~~-h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~ 535 (793)
++.++ +|++||.-- |..|.|=..... ..+....... ....=..++|+ +++..||.+...|+|+++|+.......
T Consensus 3 ~~~~~-~Gk~lAi~q-d~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WS-pD~tlLa~a~S~G~i~vfdl~g~~lf~ 79 (282)
T PF15492_consen 3 LALSS-DGKLLAILQ-DQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWS-PDCTLLAYAESTGTIRVFDLMGSELFV 79 (282)
T ss_pred eeecC-CCcEEEEEe-ccEEEEEeccCCchheeEEEecCCCCCchheEEEEC-CCCcEEEEEcCCCeEEEEecccceeEE
Confidence 34455 777776654 667777655432 2222222212 22345679998 899999999999999999998644311
Q ss_pred cccccCCceeEecCCCCeEEEEEccCC------CEEEEEECCCcEEEEECCC-----CcEEEE--EcccCCCCeEEEEEc
Q 003822 536 RGMHYGAGTVTFDEFDQLTSVHVNSMD------ELFLASGYSKNIALYDINS-----GRRLQV--FADMHKEHINVVKFS 602 (793)
Q Consensus 536 ~~~~~~~~~~~~~~~~~V~sv~~s~~~------~~lla~g~Dg~I~IWDl~t-----g~~l~~--~~~gh~~~V~sv~fs 602 (793)
... ... ....-...|.++.|.+.. ..+++...+|.++-|-+.. .+...+ +...+...|+++.|+
T Consensus 80 I~p-~~~--~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~ 156 (282)
T PF15492_consen 80 IPP-AMS--FPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYH 156 (282)
T ss_pred cCc-ccc--cCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEc
Confidence 111 110 111223457777664432 3677788888888777532 223333 333457799999999
Q ss_pred CCCCcEEEEEeCCCe-EEEEECCCCCccceEEccCCCCeEE---EEEecCCCEEEEEeCCC------eEEEEEcCCCcEE
Q 003822 603 NHSPSIFATSSFDQD-VKLWDLRQKPIQPCYTASSSKGNVM---VCFSPDDHYLLVSAVDN------EVRQLLAVDGRVH 672 (793)
Q Consensus 603 pdg~~~LaTgs~Dg~-IrIWDlrt~~~~~~~~l~~~~~~vs---v~fSpdg~~Lasgs~Dg------~I~IwDl~tg~~~ 672 (793)
|.. ++|+.|+.... -..+.. ...+..+ +.=+|..+.+. ...|+ +-.+|.+.+.+.
T Consensus 157 p~h-~LLlVgG~~~~~~~~s~a------------~~~GLtaWRiL~~~Pyyk~v~-~~~~~~~~~~~~~~~~~~~~~~~- 221 (282)
T PF15492_consen 157 PKH-RLLLVGGCEQNQDGMSKA------------SSCGLTAWRILSDSPYYKQVT-SSEDDITASSKRRGLLRIPSFKF- 221 (282)
T ss_pred CCC-CEEEEeccCCCCCccccc------------cccCceEEEEcCCCCcEEEcc-ccCccccccccccceeeccceee-
Confidence 998 66666654322 001000 0111111 22223222211 22121 112333333222
Q ss_pred EEEeeecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEE
Q 003822 673 LNFGITATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRLR 720 (793)
Q Consensus 673 ~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~ 720 (793)
+.........+..+..+|||. .||+...+|.+ .+|++.+-+..+
T Consensus 222 --fs~~~~~~d~i~kmSlSPdg~-~La~ih~sG~l-sLW~iPsL~~~~ 265 (282)
T PF15492_consen 222 --FSRQGQEQDGIFKMSLSPDGS-LLACIHFSGSL-SLWEIPSLRLQR 265 (282)
T ss_pred --eeccccCCCceEEEEECCCCC-EEEEEEcCCeE-EEEecCcchhhc
Confidence 111123456789999999999 99999999999 999999888777
No 306
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.14 E-value=9e-06 Score=85.65 Aligned_cols=156 Identities=13% Similarity=0.129 Sum_probs=112.2
Q ss_pred EEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEECCCC---CccceEEccCCCCe
Q 003822 564 LFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQK---PIQPCYTASSSKGN 640 (793)
Q Consensus 564 ~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~Dg~IrIWDlrt~---~~~~~~~l~~~~~~ 640 (793)
+-++.|.+-.|-+-|+.+|-.. .|. ..+.|.++.|+..+ +++..|...|.|..+|+|.+ ...+...+-+...+
T Consensus 226 yhfs~G~sqqv~L~nvetg~~q-sf~--sksDVfAlQf~~s~-nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssv 301 (425)
T KOG2695|consen 226 YHFSVGLSQQVLLTNVETGHQQ-SFQ--SKSDVFALQFAGSD-NLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSV 301 (425)
T ss_pred eeecccccceeEEEEeeccccc-ccc--cchhHHHHHhcccC-CeeEecccCCcEEEEEeeecccCCCcceEEEEcCcch
Confidence 3466777888889999876432 333 56789999999877 79999999999999999975 22333444444444
Q ss_pred EEEEEec-CCCEEEEEeCCCeEEEEEcCCCcE---EEEEeeecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCC
Q 003822 641 VMVCFSP-DDHYLLVSAVDNEVRQLLAVDGRV---HLNFGITATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTG 716 (793)
Q Consensus 641 vsv~fSp-dg~~Lasgs~Dg~I~IwDl~tg~~---~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg 716 (793)
+++..-. ++++|++.+.+|+|++||.+.-++ +++++++...+. ..-+...+..+ .|++++.|... |||.+..|
T Consensus 302 tslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a-~l~~~v~~eeg-~I~s~GdDcyt-RiWsl~~g 378 (425)
T KOG2695|consen 302 TSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSA-YLPAHVKEEEG-SIFSVGDDCYT-RIWSLDSG 378 (425)
T ss_pred hhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeeccccccc-ccccccccccc-eEEEccCeeEE-EEEecccC
Confidence 4544333 688999999999999999987766 788875433222 22233445555 89999999999 99999999
Q ss_pred cEEEeeeecCCC
Q 003822 717 RRLRDISLEGKG 728 (793)
Q Consensus 717 ~~l~~~~L~gh~ 728 (793)
+++. ++.-..
T Consensus 379 hLl~--tipf~~ 388 (425)
T KOG2695|consen 379 HLLC--TIPFPY 388 (425)
T ss_pred ceee--ccCCCC
Confidence 9999 554433
No 307
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.14 E-value=0.0014 Score=70.09 Aligned_cols=229 Identities=14% Similarity=0.113 Sum_probs=139.4
Q ss_pred eEEEEEeCCCCCEEEEEeCCCe-EEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEc-----CCcEEEEEcC
Q 003822 456 PRQFEYHPSISCLMVFGTLDGE-IVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSD-----NGSLKLYDIR 529 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~-I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~-----DgtV~vWDl~ 529 (793)
.-.++.+|..+..++.+-.-|+ ..+||..+++....+......----.-.|+ ++|++|++.-. .|.|-|||..
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs-~dG~~LytTEnd~~~g~G~IgVyd~~ 85 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFS-PDGRLLYTTENDYETGRGVIGVYDAA 85 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEc-CCCCEEEEeccccCCCcEEEEEEECc
Confidence 3457788977888888888775 789999999988776532111111134566 89999988643 4789999999
Q ss_pred CCCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEE------------------CCCcEEEEECCCCcEEEEEc--
Q 003822 530 HMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASG------------------YSKNIALYDINSGRRLQVFA-- 589 (793)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g------------------~Dg~I~IWDl~tg~~l~~~~-- 589 (793)
.+-..+..... +.-....+.+.|++..++++- .+..+.+.|..+|+.+.+..
T Consensus 86 ~~~~ri~E~~s--------~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp 157 (305)
T PF07433_consen 86 RGYRRIGEFPS--------HGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELP 157 (305)
T ss_pred CCcEEEeEecC--------CCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecC
Confidence 43222111110 111234555667776666651 12235566788888777643
Q ss_pred -ccCCCCeEEEEEcCCCCcEEEEEeCCCe-------EEEEECCCCCccceEEcc-----C-CCCeEEEEEecCCCEEEEE
Q 003822 590 -DMHKEHINVVKFSNHSPSIFATSSFDQD-------VKLWDLRQKPIQPCYTAS-----S-SKGNVMVCFSPDDHYLLVS 655 (793)
Q Consensus 590 -~gh~~~V~sv~fspdg~~~LaTgs~Dg~-------IrIWDlrt~~~~~~~~l~-----~-~~~~vsv~fSpdg~~Lasg 655 (793)
.-|+-.|.-+++.++| ..++..-..|. |-+++.... ...+..+ . ...+-+|+++++|.++++.
T Consensus 158 ~~~~~lSiRHLa~~~~G-~V~~a~Q~qg~~~~~~PLva~~~~g~~--~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~t 234 (305)
T PF07433_consen 158 PDLHQLSIRHLAVDGDG-TVAFAMQYQGDPGDAPPLVALHRRGGA--LRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVT 234 (305)
T ss_pred ccccccceeeEEecCCC-cEEEEEecCCCCCccCCeEEEEcCCCc--ceeccCChHHHHhhCCceEEEEEeCCCCEEEEE
Confidence 2377889999999998 44444433332 444443321 1111111 1 1123369999999988777
Q ss_pred e-CCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCCCeEEEEEeC
Q 003822 656 A-VDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNGRDYIVSGSC 703 (793)
Q Consensus 656 s-~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~ 703 (793)
+ ..|.+.+||..+++.+..... ..+..++-.+++ +++|.+.
T Consensus 235 sPrGg~~~~~d~~tg~~~~~~~l-----~D~cGva~~~~~--f~~ssG~ 276 (305)
T PF07433_consen 235 SPRGGRVAVWDAATGRLLGSVPL-----PDACGVAPTDDG--FLVSSGQ 276 (305)
T ss_pred CCCCCEEEEEECCCCCEeecccc-----CceeeeeecCCc--eEEeCCC
Confidence 7 567899999999998766532 223344444444 5665544
No 308
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.11 E-value=8.6e-06 Score=59.52 Aligned_cols=39 Identities=28% Similarity=0.619 Sum_probs=36.0
Q ss_pred CcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEE
Q 003822 582 GRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWD 622 (793)
Q Consensus 582 g~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~Dg~IrIWD 622 (793)
|+++.++. +|.+.|++++|+|++ .+|++|+.|+.|++||
T Consensus 1 g~~~~~~~-~h~~~i~~i~~~~~~-~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFR-GHSSSINSIAWSPDG-NFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEE-SSSSSEEEEEEETTS-SEEEEEETTSEEEEEE
T ss_pred CeEEEEEc-CCCCcEEEEEEeccc-ccceeeCCCCEEEEEC
Confidence 46788888 799999999999998 8999999999999998
No 309
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.09 E-value=0.00022 Score=76.87 Aligned_cols=226 Identities=11% Similarity=0.075 Sum_probs=127.9
Q ss_pred EEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcccccccCCceeEecCCCCeEEEE
Q 003822 478 IVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVH 557 (793)
Q Consensus 478 I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~ 557 (793)
|++.+..+-+....++ +|...|.+++|+|.+..++..++.+.+|+|.|+++... ...+....++++++
T Consensus 175 v~~l~~~~fkssq~lp--~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~----------vssy~a~~~~wSC~ 242 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILP--GEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCV----------VSSYIAYNQIWSCC 242 (463)
T ss_pred eEEeccCCcchhhccc--ccchhhhhhccCccccceeeeeccCceEEEEeccccee----------eeheeccCCceeee
Confidence 5555554444444333 77889999999976666899999999999999998543 22344447899999
Q ss_pred EccCCCEEEEEE-CCCcEEEEECCCCc-EEEEEcc-cCCCCeEEEEE------cCCCCcEEEEEeCCCeEEEEECCCC--
Q 003822 558 VNSMDELFLASG-YSKNIALYDINSGR-RLQVFAD-MHKEHINVVKF------SNHSPSIFATSSFDQDVKLWDLRQK-- 626 (793)
Q Consensus 558 ~s~~~~~lla~g-~Dg~I~IWDl~tg~-~l~~~~~-gh~~~V~sv~f------spdg~~~LaTgs~Dg~IrIWDlrt~-- 626 (793)
|.-++..++.+| ..|.|.|||++..+ ++..+.. ....+|..++. .+.| .+++..+.+ ...|.+...
T Consensus 243 wDlde~h~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~g-glLv~~lt~--l~f~ei~~s~~ 319 (463)
T KOG1645|consen 243 WDLDERHVIYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSG-GLLVFALTV--LQFYEIVFSAE 319 (463)
T ss_pred eccCCcceeEEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCcccccccc-ceEEeeehh--hhhhhhhcccc
Confidence 988888777777 58999999999643 2222221 12233333332 2334 355555444 556766543
Q ss_pred CccceEEccCCCCeEEEEEecCCCEEEEEeCCC-------eEE-EEEcCCCcEEEEEeeecCCC----CCcEEEEE-eeC
Q 003822 627 PIQPCYTASSSKGNVMVCFSPDDHYLLVSAVDN-------EVR-QLLAVDGRVHLNFGITATGS----SQNYTRSY-YLN 693 (793)
Q Consensus 627 ~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs~Dg-------~I~-IwDl~tg~~~~~l~~~~~~~----~~v~s~af-spd 693 (793)
...++..+......+++++.+..+.++.....+ .+- --|-.+|..+..-.....+. -......+ .++
T Consensus 320 ~~p~vlele~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~ 399 (463)
T KOG1645|consen 320 CLPCVLELEPPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVED 399 (463)
T ss_pred CCCcccccCCCcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceecccc
Confidence 223333333333444577777666666554331 111 11223343332221100000 00011122 344
Q ss_pred CCeEEEEEeC-CCcEEEEEEcCCCcEEE
Q 003822 694 GRDYIVSGSC-DEHVVRICCAQTGRRLR 720 (793)
Q Consensus 694 g~~~L~Sgs~-Dg~II~IWDv~tg~~l~ 720 (793)
.. +|+..+. ...+ .+||..+++.++
T Consensus 400 nn-~iv~~gd~tn~l-il~D~~s~evvQ 425 (463)
T KOG1645|consen 400 NN-YIVVVGDSTNEL-ILQDPHSFEVVQ 425 (463)
T ss_pred cc-EEEEecCCccee-EEeccchhheee
Confidence 54 5555444 4456 999999999998
No 310
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.05 E-value=8.7e-05 Score=86.70 Aligned_cols=183 Identities=14% Similarity=0.186 Sum_probs=134.5
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcccccccCCce
Q 003822 465 ISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGT 544 (793)
Q Consensus 465 d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~~~~~~~~~~ 544 (793)
++..++.|+....+..+|+++.+..+..... .+.|+-++ .+++.+.+|...|+|.+-|.++.+.. ..
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~--a~~v~imR---~Nnr~lf~G~t~G~V~LrD~~s~~~i-ht------- 212 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVS--ASGVTIMR---YNNRNLFCGDTRGTVFLRDPNSFETI-HT------- 212 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeecc--CCceEEEE---ecCcEEEeecccceEEeecCCcCcee-ee-------
Confidence 4577888988889999999988877766532 23366666 46789999999999999999885541 11
Q ss_pred eEecCCCCeEEEEEccCCCEEEEEEC---------CCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeCC
Q 003822 545 VTFDEFDQLTSVHVNSMDELFLASGY---------SKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFD 615 (793)
Q Consensus 545 ~~~~~~~~V~sv~~s~~~~~lla~g~---------Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~D 615 (793)
.-.|.+.|.++++ .|+.++++|. |.-|+|||++..+.+.-+. .+.++ .-+.|+|.-...+++++..
T Consensus 213 -~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~-~~~~P-~flrf~Psl~t~~~V~S~s 287 (1118)
T KOG1275|consen 213 -FDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQ-FPYGP-QFLRFHPSLTTRLAVTSQS 287 (1118)
T ss_pred -eeccccceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcc-cccCc-hhhhhcccccceEEEEecc
Confidence 1234566777776 7899999884 3458999999887766665 23333 6688999887899999999
Q ss_pred CeEEEEECC---CCCccceEEccCCCCeEEEEEecCCCEEEEEeCCCeEEEEE
Q 003822 616 QDVKLWDLR---QKPIQPCYTASSSKGNVMVCFSPDDHYLLVSAVDNEVRQLL 665 (793)
Q Consensus 616 g~IrIWDlr---t~~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs~Dg~I~IwD 665 (793)
|...+-|.. ..........+.......+.+|++|..++.|..+|.|.+|-
T Consensus 288 Gq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 288 GQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred cceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 999999943 32222222222333355699999999999999999999997
No 311
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.04 E-value=0.0014 Score=79.40 Aligned_cols=233 Identities=12% Similarity=0.147 Sum_probs=134.8
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcc
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSI 535 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~ 535 (793)
|.++.|.- ++.-++.+..+|.|.+-|.++......- .-.+.|.+++|+ ++++.++..+.++++.+-+-. -....
T Consensus 71 i~s~~fl~-d~~~i~v~~~~G~iilvd~et~~~eivg---~vd~GI~aaswS-~Dee~l~liT~~~tll~mT~~-f~~i~ 144 (1265)
T KOG1920|consen 71 IVSVQFLA-DTNSICVITALGDIILVDPETLELEIVG---NVDNGISAASWS-PDEELLALITGRQTLLFMTKD-FEPIA 144 (1265)
T ss_pred eEEEEEec-ccceEEEEecCCcEEEEcccccceeeee---eccCceEEEeec-CCCcEEEEEeCCcEEEEEecc-ccchh
Confidence 88999999 8888999999999999998876543222 234689999998 799999999888887664321 11100
Q ss_pred cccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCc-----EEEEEc--c--cCCCCeEEEEEcCCCC
Q 003822 536 RGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGR-----RLQVFA--D--MHKEHINVVKFSNHSP 606 (793)
Q Consensus 536 ~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~-----~l~~~~--~--gh~~~V~sv~fspdg~ 606 (793)
.... ... . -..+.++.+|....=.=+.-..|+ .+..-+ + .-.+.=+.|.|--||
T Consensus 145 E~~L-~~d---~------------~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg- 207 (1265)
T KOG1920|consen 145 EKPL-DAD---D------------ERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDG- 207 (1265)
T ss_pred cccc-ccc---c------------ccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCC-
Confidence 0000 000 0 011233333322111111111110 000000 0 011223568999998
Q ss_pred cEEEEEe----CC-CeEEEEECCCCCccceEEccCCCCeEEEEEecCCCEEEEEe---CCCeEEEEEcCCCcEEEEEeee
Q 003822 607 SIFATSS----FD-QDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLVSA---VDNEVRQLLAVDGRVHLNFGIT 678 (793)
Q Consensus 607 ~~LaTgs----~D-g~IrIWDlrt~~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs---~Dg~I~IwDl~tg~~~~~l~~~ 678 (793)
.++|+.. .+ +.|+|||.. +....... +.....-+++|-|.|..+++-. .|+.|.+|. ++|-.+..|...
T Consensus 208 ~~fAVs~~~~~~~~RkirV~drE-g~Lns~se-~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffE-rNGL~hg~f~l~ 284 (1265)
T KOG1920|consen 208 EYFAVSFVESETGTRKIRVYDRE-GALNSTSE-PVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFE-RNGLRHGEFVLP 284 (1265)
T ss_pred cEEEEEEEeccCCceeEEEeccc-chhhcccC-cccccccceeecCCCCeEeeeeecCCCCcEEEEe-cCCccccccccC
Confidence 7888733 23 789999987 32221111 1111112599999999998864 456788887 556555555443
Q ss_pred cCCCCC-cEEEEEeeCCCeEEEE---EeCCCcEEEEEEcCCC
Q 003822 679 ATGSSQ-NYTRSYYLNGRDYIVS---GSCDEHVVRICCAQTG 716 (793)
Q Consensus 679 ~~~~~~-v~s~afspdg~~~L~S---gs~Dg~II~IWDv~tg 716 (793)
..-... +..++|+.++. .|+. ......| ++|-+..-
T Consensus 285 ~p~de~~ve~L~Wns~sd-iLAv~~~~~e~~~v-~lwt~~Ny 324 (1265)
T KOG1920|consen 285 FPLDEKEVEELAWNSNSD-ILAVVTSNLENSLV-QLWTTGNY 324 (1265)
T ss_pred CcccccchheeeecCCCC-ceeeeecccccceE-EEEEecCe
Confidence 333333 78899999998 6666 3333347 99977654
No 312
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=98.04 E-value=0.005 Score=65.63 Aligned_cols=239 Identities=18% Similarity=0.194 Sum_probs=139.1
Q ss_pred CCCEEEEEeCCCeEEEEECC-CCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcccccccC--
Q 003822 465 ISCLMVFGTLDGEIVVVNHE-NENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYG-- 541 (793)
Q Consensus 465 d~~~Lasgs~DG~I~VWd~~-t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~~~~~~~-- 541 (793)
.++.|+.|+.+| +.+++.. ......... ...|..+... ++-+.+++-+ |+.+.++++..-..........
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~----~~~I~ql~vl-~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~ 78 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSKPTRILK----LSSITQLSVL-PELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFP 78 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCccceeEee----cceEEEEEEe-cccCEEEEEc-CCccEEEEchhhcccccccccccc
Confidence 567899999999 9999983 333333332 2349999987 4445555544 5999999998754422110000
Q ss_pred ---CceeEecCCCCeEEEE--EccCCCEEEEEECCCcEEEEECCCC-----cEEEEEcccCCCCeEEEEEcCCCCcEEEE
Q 003822 542 ---AGTVTFDEFDQLTSVH--VNSMDELFLASGYSKNIALYDINSG-----RRLQVFADMHKEHINVVKFSNHSPSIFAT 611 (793)
Q Consensus 542 ---~~~~~~~~~~~V~sv~--~s~~~~~lla~g~Dg~I~IWDl~tg-----~~l~~~~~gh~~~V~sv~fspdg~~~LaT 611 (793)
...........+...+ -...+...++.+....|.+|..... +..+.+. -...+.+++|.+ +.++.
T Consensus 79 ~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~--lp~~~~~i~~~~---~~i~v 153 (275)
T PF00780_consen 79 KSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS--LPDPPSSIAFLG---NKICV 153 (275)
T ss_pred ccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE--cCCCcEEEEEeC---CEEEE
Confidence 0000111222344443 2234556666666778888877652 4556665 568899999983 46777
Q ss_pred EeCCCeEEEEECCCCCccceEEccCCC----------CeEEEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCC
Q 003822 612 SSFDQDVKLWDLRQKPIQPCYTASSSK----------GNVMVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATG 681 (793)
Q Consensus 612 gs~Dg~IrIWDlrt~~~~~~~~l~~~~----------~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~ 681 (793)
|..++ ..+.|+.++....+....... .+..+---+++.+|++- |..-...| ..|+..+...+ .-
T Consensus 154 ~~~~~-f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll~~--~~~g~fv~-~~G~~~r~~~i--~W 227 (275)
T PF00780_consen 154 GTSKG-FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFLLCY--DNIGVFVN-KNGEPSRKSTI--QW 227 (275)
T ss_pred EeCCc-eEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCCceEEEEe--cceEEEEc-CCCCcCcccEE--Ec
Confidence 77554 788899977655554332211 22333333456666654 33333334 45554331111 12
Q ss_pred CCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCC
Q 003822 682 SSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKG 728 (793)
Q Consensus 682 ~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~ 728 (793)
...+..+++... ||++.+.++ | .||++.+|+.++ ++.+++
T Consensus 228 ~~~p~~~~~~~p---yli~~~~~~-i-EV~~~~~~~lvQ--~i~~~~ 267 (275)
T PF00780_consen 228 SSAPQSVAYSSP---YLIAFSSNS-I-EVRSLETGELVQ--TIPLPN 267 (275)
T ss_pred CCchhEEEEECC---EEEEECCCE-E-EEEECcCCcEEE--EEECCC
Confidence 234455666433 788776654 7 999999999999 666554
No 313
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.03 E-value=0.0019 Score=67.85 Aligned_cols=204 Identities=15% Similarity=0.238 Sum_probs=117.3
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcc
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSI 535 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~ 535 (793)
+..++|+|.++.++++....+.|..++. +|+.+..+++.+ .+..-+|++. .++.++++.-.++.+.++++.......
T Consensus 24 ~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g-~~D~EgI~y~-g~~~~vl~~Er~~~L~~~~~~~~~~~~ 100 (248)
T PF06977_consen 24 LSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDG-FGDYEGITYL-GNGRYVLSEERDQRLYIFTIDDDTTSL 100 (248)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS--SSEEEEEE--STTEEEEEETTTTEEEEEEE----TT-
T ss_pred ccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCC-CCCceeEEEE-CCCEEEEEEcCCCcEEEEEEecccccc
Confidence 8899999965667777888889988887 488888888755 4568889986 455455544468999999996543322
Q ss_pred cccccCCceeEe--cCCCCeEEEEEccCCCEEEEEECCCcEEEEECCC---CcEEEEE--c-----ccCCCCeEEEEEcC
Q 003822 536 RGMHYGAGTVTF--DEFDQLTSVHVNSMDELFLASGYSKNIALYDINS---GRRLQVF--A-----DMHKEHINVVKFSN 603 (793)
Q Consensus 536 ~~~~~~~~~~~~--~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~t---g~~l~~~--~-----~gh~~~V~sv~fsp 603 (793)
.......-...+ .+...+-.++|.+.++.++++-...-..+|.+.. ...+... . ......+.+++++|
T Consensus 101 ~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p 180 (248)
T PF06977_consen 101 DRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDP 180 (248)
T ss_dssp -EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEET
T ss_pred chhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcC
Confidence 111000000111 2335689999999999888887655555665543 2221111 1 12345678999999
Q ss_pred CCCcEEEEEeCCCeEEEEECCCCCccceEEccCC--------CCeEEEEEecCCCEEEEEeCCCeEEEE
Q 003822 604 HSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSS--------KGNVMVCFSPDDHYLLVSAVDNEVRQL 664 (793)
Q Consensus 604 dg~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~--------~~~vsv~fSpdg~~Lasgs~Dg~I~Iw 664 (793)
..+++++.+.....|..+| .+++......+... ..+-.++|.++|+ |+..+.-+..++|
T Consensus 181 ~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~-LYIvsEpNlfy~f 247 (248)
T PF06977_consen 181 RTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGN-LYIVSEPNLFYRF 247 (248)
T ss_dssp TTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT---EEEEETTTEEEEE
T ss_pred CCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCC-EEEEcCCceEEEe
Confidence 9878888888899999999 45555555555442 1233599999996 5555556666654
No 314
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.02 E-value=7.7e-05 Score=87.14 Aligned_cols=183 Identities=18% Similarity=0.172 Sum_probs=128.6
Q ss_pred CCCEEEEEEcCCcEEEEEcCCCCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEc
Q 003822 510 YPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFA 589 (793)
Q Consensus 510 ~g~~Lasgs~DgtV~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~ 589 (793)
++..++.|+....+..+|+++.+....... ....|.-+.. ++..+.+|...|+|.+-|.++.+.++++.
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v---------~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~ 214 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNV---------SASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFD 214 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeec---------cCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeee
Confidence 456788888888888899988654211111 0112444443 55666666678999999999999999999
Q ss_pred ccCCCCeEEEEEcCCCCcEEEEEeC---------CCeEEEEECCCCCccceEEccCCCCeEEEEEecC-CCEEEEEeCCC
Q 003822 590 DMHKEHINVVKFSNHSPSIFATSSF---------DQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPD-DHYLLVSAVDN 659 (793)
Q Consensus 590 ~gh~~~V~sv~fspdg~~~LaTgs~---------Dg~IrIWDlrt~~~~~~~~l~~~~~~vsv~fSpd-g~~Lasgs~Dg 659 (793)
+|++.|.++.. .| ++|+|++. |.-|+|||+|..+. +..++-+.++.-+.|.|. ...+++++..|
T Consensus 215 -aHs~siSDfDv--~G-NlLitCG~S~R~~~l~~D~FvkVYDLRmmra--l~PI~~~~~P~flrf~Psl~t~~~V~S~sG 288 (1118)
T KOG1275|consen 215 -AHSGSISDFDV--QG-NLLITCGYSMRRYNLAMDPFVKVYDLRMMRA--LSPIQFPYGPQFLRFHPSLTTRLAVTSQSG 288 (1118)
T ss_pred -ccccceeeeec--cC-CeEEEeecccccccccccchhhhhhhhhhhc--cCCcccccCchhhhhcccccceEEEEeccc
Confidence 79999987666 56 78998886 44589999998632 223333344445788885 45688888899
Q ss_pred eEEEEEcCCC-cE-EEEEeeecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEE
Q 003822 660 EVRQLLAVDG-RV-HLNFGITATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICC 712 (793)
Q Consensus 660 ~I~IwDl~tg-~~-~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWD 712 (793)
...+-|..+. .+ ...+.+. .....+....++++|. .++.|..+|.| .+|-
T Consensus 289 q~q~vd~~~lsNP~~~~~~v~-p~~s~i~~fDiSsn~~-alafgd~~g~v-~~wa 340 (1118)
T KOG1275|consen 289 QFQFVDTATLSNPPAGVKMVN-PNGSGISAFDISSNGD-ALAFGDHEGHV-NLWA 340 (1118)
T ss_pred ceeeccccccCCCccceeEEc-cCCCcceeEEecCCCc-eEEEecccCcE-eeec
Confidence 9999984332 11 1222222 2344588899999999 99999999999 9996
No 315
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.00 E-value=0.00071 Score=77.20 Aligned_cols=237 Identities=13% Similarity=0.063 Sum_probs=158.7
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcc
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSI 535 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~ 535 (793)
|.-+.|+. ..+.|-+...+|-|.||-+-+|............+.|.+++|. .+|..++....||.|.+=.++..+.--
T Consensus 74 V~vvTWNe-~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn-~dG~kIcIvYeDGavIVGsvdGNRIwg 151 (1189)
T KOG2041|consen 74 VMVVTWNE-NNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWN-LDGTKICIVYEDGAVIVGSVDGNRIWG 151 (1189)
T ss_pred EEEEEecc-ccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEc-CCCcEEEEEEccCCEEEEeeccceecc
Confidence 88899999 7788999999999999999888754433333456779999997 899999999999999888877654321
Q ss_pred cccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCC-------cEEEEEcc---cCCCCeEEEEEc---
Q 003822 536 RGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSG-------RRLQVFAD---MHKEHINVVKFS--- 602 (793)
Q Consensus 536 ~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg-------~~l~~~~~---gh~~~V~sv~fs--- 602 (793)
+.+.+ .....+.|+++...++.+-..|.+.+||.... .+.....+ .....|..+.|.
T Consensus 152 KeLkg----------~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~ 221 (1189)
T KOG2041|consen 152 KELKG----------QLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGP 221 (1189)
T ss_pred hhcch----------heccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCc
Confidence 21111 12346778888888888888899999998742 12112111 122345566664
Q ss_pred -----CCCCcEEEEEeCCCeEEEEECCCCCccceEEccCCCCeEEEEEecCCCEEEEEeCC---------CeEEEEEcCC
Q 003822 603 -----NHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLVSAVD---------NEVRQLLAVD 668 (793)
Q Consensus 603 -----pdg~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs~D---------g~I~IwDl~t 668 (793)
|+. -.|+.+-..|.+.|..-.+.. .|+..-.+ ..++.+.|+++|..|++++.+ +.|.+|. .-
T Consensus 222 ~~~v~pdr-P~lavcy~nGr~QiMR~eND~-~Pvv~dtg-m~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~ 297 (1189)
T KOG2041|consen 222 YQPVPPDR-PRLAVCYANGRMQIMRSENDP-EPVVVDTG-MKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PY 297 (1189)
T ss_pred cccCCCCC-CEEEEEEcCceehhhhhcCCC-CCeEEecc-cEeecceecCCCcEEEEccCcccccCccccceEEEec-cc
Confidence 355 478899999998886544432 33333222 456679999999999998754 2455554 45
Q ss_pred CcEEEEEeeecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcC
Q 003822 669 GRVHLNFGITATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQ 714 (793)
Q Consensus 669 g~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~ 714 (793)
|+.+.+++. ....+..++|-..|- .++- ..|+.| ++=+++
T Consensus 298 G~i~gtlkv---pg~~It~lsWEg~gL-riA~-Avdsfi-yfanIR 337 (1189)
T KOG2041|consen 298 GHIVGTLKV---PGSCITGLSWEGTGL-RIAI-AVDSFI-YFANIR 337 (1189)
T ss_pred hhheEEEec---CCceeeeeEEcCCce-EEEE-EecceE-EEEeec
Confidence 777777763 445677788877664 3332 245555 554443
No 316
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.97 E-value=0.0071 Score=64.77 Aligned_cols=208 Identities=14% Similarity=0.080 Sum_probs=131.3
Q ss_pred EEEEEEeeCCCCEEEEEEcCCc-EEEEEcCCCCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEEC-----CCcE
Q 003822 501 VLGLCWLKKYPSKLIAGSDNGS-LKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY-----SKNI 574 (793)
Q Consensus 501 V~sv~fs~~~g~~Lasgs~Dgt-V~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~-----Dg~I 574 (793)
...++.+|..+..++.+-.-|+ ..+||..+++..... ........+. .-.|++++..++++-+ .|.|
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~-~a~~gRHFyG------Hg~fs~dG~~LytTEnd~~~g~G~I 79 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRL-WAPPGRHFYG------HGVFSPDGRLLYTTENDYETGRGVI 79 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEE-cCCCCCEEec------CEEEcCCCCEEEEeccccCCCcEEE
Confidence 3456666556777788877765 678999887763322 2122222222 2467788888888853 4889
Q ss_pred EEEECC-CCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeC------------------CCeEEEEECCCCCccceEEcc
Q 003822 575 ALYDIN-SGRRLQVFADMHKEHINVVKFSNHSPSIFATSSF------------------DQDVKLWDLRQKPIQPCYTAS 635 (793)
Q Consensus 575 ~IWDl~-tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~------------------Dg~IrIWDlrt~~~~~~~~l~ 635 (793)
-|||.. +-+.+..+. .|.-....+.+.|+| ..|+.+.. +..+...|.++++......++
T Consensus 80 gVyd~~~~~~ri~E~~-s~GIGPHel~l~pDG-~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp 157 (305)
T PF07433_consen 80 GVYDAARGYRRIGEFP-SHGIGPHELLLMPDG-ETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELP 157 (305)
T ss_pred EEEECcCCcEEEeEec-CCCcChhhEEEcCCC-CEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecC
Confidence 999999 667888888 476677789999999 55555432 123455566666555444552
Q ss_pred --CCCCeEE-EEEecCCCEEEEEeCCCe-------EEEEEcCCCcEEEEEeee----cCCCCCcEEEEEeeCCCeEEEEE
Q 003822 636 --SSKGNVM-VCFSPDDHYLLVSAVDNE-------VRQLLAVDGRVHLNFGIT----ATGSSQNYTRSYYLNGRDYIVSG 701 (793)
Q Consensus 636 --~~~~~vs-v~fSpdg~~Lasgs~Dg~-------I~IwDl~tg~~~~~l~~~----~~~~~~v~s~afspdg~~~L~Sg 701 (793)
.|.-.+. +++.++|..++..-..|. +-+++ .+..+..+... ..-...+-+++++.++. ++++.
T Consensus 158 ~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~--~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~-~ia~t 234 (305)
T PF07433_consen 158 PDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHR--RGGALRLLPAPEEQWRRLNGYIGSIAADRDGR-LIAVT 234 (305)
T ss_pred ccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEc--CCCcceeccCChHHHHhhCCceEEEEEeCCCC-EEEEE
Confidence 2444443 888988886666544332 23333 33323333221 12235677899999998 66666
Q ss_pred eCCCcEEEEEEcCCCcEEE
Q 003822 702 SCDEHVVRICCAQTGRRLR 720 (793)
Q Consensus 702 s~Dg~II~IWDv~tg~~l~ 720 (793)
+--|..+.+||..+|+.+.
T Consensus 235 sPrGg~~~~~d~~tg~~~~ 253 (305)
T PF07433_consen 235 SPRGGRVAVWDAATGRLLG 253 (305)
T ss_pred CCCCCEEEEEECCCCCEee
Confidence 6555444999999999988
No 317
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.96 E-value=0.0024 Score=74.24 Aligned_cols=247 Identities=15% Similarity=0.167 Sum_probs=143.4
Q ss_pred CEEEEEeCCCeEEEEECCCCeEEEEEeccCCC---CCEE-EEEEeeCCCCEEEEEE---------cCCcEEEEEcCCCCC
Q 003822 467 CLMVFGTLDGEIVVVNHENENIVSYIPSFGAM---NSVL-GLCWLKKYPSKLIAGS---------DNGSLKLYDIRHMPP 533 (793)
Q Consensus 467 ~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~---~~V~-sv~fs~~~g~~Lasgs---------~DgtV~vWDl~~~~~ 533 (793)
..++.++.+|.|.-+|.++|+.+.......+. ..+. +..+. +..++.++ .+|.+..+|..+++.
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~---~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~ 187 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV---KKLVIIGSSGAEFFACGVRGALRAYDVETGKL 187 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEE---CCEEEEeccccccccCCCCcEEEEEECCCCce
Confidence 67888889999999999999998777643321 0011 11111 24555554 367889999998887
Q ss_pred cccccccCCceeEecC----------C-CCe-EEEEEccCCCEEEEEECCC------------------cEEEEECCCCc
Q 003822 534 SIRGMHYGAGTVTFDE----------F-DQL-TSVHVNSMDELFLASGYSK------------------NIALYDINSGR 583 (793)
Q Consensus 534 ~~~~~~~~~~~~~~~~----------~-~~V-~sv~~s~~~~~lla~g~Dg------------------~I~IWDl~tg~ 583 (793)
..+............. . ..+ ....+.+.++.+++++.++ .|.-+|+.+|+
T Consensus 188 ~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~ 267 (488)
T cd00216 188 LWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGK 267 (488)
T ss_pred eeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCC
Confidence 5543221111000000 0 111 1234444567777776554 79999999999
Q ss_pred EEEEEcccCCC-----CeEEEEEc----CCCC--cEEEEEeCCCeEEEEECCCCCccceEEccCCCCeEEEEEecCCCEE
Q 003822 584 RLQVFADMHKE-----HINVVKFS----NHSP--SIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYL 652 (793)
Q Consensus 584 ~l~~~~~gh~~-----~V~sv~fs----pdg~--~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~~~~vsv~fSpdg~~L 652 (793)
.+..++..+.. ......+. -++. ..++.++.+|.+...|.++++. +...... ...++.+| ..+
T Consensus 268 ~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~--~W~~~~~--~~~~~~~~--~~v 341 (488)
T cd00216 268 VKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKL--ISARPEV--EQPMAYDP--GLV 341 (488)
T ss_pred EEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcE--eeEeEee--ccccccCC--ceE
Confidence 99887632211 00011111 1221 2677888999999999999843 3332211 01133444 233
Q ss_pred EEE------------------eCCCeEEEEEcCCCcEEEEEeeecCCC-----CCcEEEEEeeCCCeEEEEEeCCCcEEE
Q 003822 653 LVS------------------AVDNEVRQLLAVDGRVHLNFGITATGS-----SQNYTRSYYLNGRDYIVSGSCDEHVVR 709 (793)
Q Consensus 653 asg------------------s~Dg~I~IwDl~tg~~~~~l~~~~~~~-----~~v~s~afspdg~~~L~Sgs~Dg~II~ 709 (793)
+++ ..+|.+.-+|+.+|+.+-+........ ...........+. +|+.|+.||.+ +
T Consensus 342 yv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~-~v~~g~~dG~l-~ 419 (488)
T cd00216 342 YLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGN-LVFAGAADGYF-R 419 (488)
T ss_pred EEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCC-eEEEECCCCeE-E
Confidence 332 236788899999998876665321000 0111111122444 78889999999 9
Q ss_pred EEEcCCCcEEEeeee
Q 003822 710 ICCAQTGRRLRDISL 724 (793)
Q Consensus 710 IWDv~tg~~l~~~~L 724 (793)
.+|..+|+.+....+
T Consensus 420 ald~~tG~~lW~~~~ 434 (488)
T cd00216 420 AFDATTGKELWKFRT 434 (488)
T ss_pred EEECCCCceeeEEEC
Confidence 999999999995444
No 318
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.96 E-value=7.6e-06 Score=92.18 Aligned_cols=268 Identities=19% Similarity=0.178 Sum_probs=158.6
Q ss_pred CCEEEEEEeeC-CCCEEEEEEcCCcEEEEEcCCCCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEEC-----CC
Q 003822 499 NSVLGLCWLKK-YPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY-----SK 572 (793)
Q Consensus 499 ~~V~sv~fs~~-~g~~Lasgs~DgtV~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~-----Dg 572 (793)
..+.|++++-. +...+++|..+|.|-+-.++...-. ...++..+..+.++++|++-+...+++|. |.
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS-------s~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds 129 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS-------SAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDS 129 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccc-------cceecccccccccccccccccHHHHHhhhhhhcccC
Confidence 45667766422 2257888999999999888764321 12334455577899999998877777763 57
Q ss_pred cEEEEECCCC--cEE--EEEcccCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEECCCCCcc-ceEEccCCCCeEEEEEec
Q 003822 573 NIALYDINSG--RRL--QVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQ-PCYTASSSKGNVMVCFSP 647 (793)
Q Consensus 573 ~I~IWDl~tg--~~l--~~~~~gh~~~V~sv~fspdg~~~LaTgs~Dg~IrIWDlrt~~~~-~~~~l~~~~~~vsv~fSp 647 (793)
.+.|||+.++ .+. ..|..+......+++|..+. +++.+|...+.++++|+|..... ..+..+.+.+ +..+|
T Consensus 130 ~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~-klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG---~tVdp 205 (783)
T KOG1008|consen 130 SLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDT-KLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQG---ITVDP 205 (783)
T ss_pred CccceecccccCCCccccccccccccCccccccccCc-chhhcccccchhhhhhhhhhhhhhhhhhhhhccc---ceecC
Confidence 7999999986 222 22221244556689999776 78899999999999999953211 1111112222 56777
Q ss_pred -CCCEEEEEeCCCeEEEEEc-CCCc-EEEEEee-ecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEEeee
Q 003822 648 -DDHYLLVSAVDNEVRQLLA-VDGR-VHLNFGI-TATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRLRDIS 723 (793)
Q Consensus 648 -dg~~Lasgs~Dg~I~IwDl-~tg~-~~~~l~~-~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~ 723 (793)
.+.|+++-. ||.|.+||. .+-+ ++..+.. .......+..++|.|.....+++.+.|...|+.+|+..--.-.
T Consensus 206 ~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~v~t~~--- 281 (783)
T KOG1008|consen 206 FSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICVVGTEG--- 281 (783)
T ss_pred CCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccccCCcc---
Confidence 678877766 999999993 2221 1111110 0111234788999997666888888887666999875311100
Q ss_pred ecCCCCCccceeeeccCCccccCC--ccEEEEEEcCCCCceeeEeeEEEeCCCcEEEEcCCCCCCCC
Q 003822 724 LEGKGSGTSMFVQSLRGDPFRDFN--MSILAAYTRPSSKSEIVKVNLLASTDHCDKECSHGQHSRPS 788 (793)
Q Consensus 724 L~gh~~~~s~~v~sl~g~~~~~h~--~~V~sva~~P~~~~~iv~~~ltaS~Dg~VkvW~~~~~~~~~ 788 (793)
.+.. ..++.-..--|+..-. ..|....||+.++...+ +++.....++-+++.+...|.
T Consensus 282 -s~nn---~~~~~~~s~~~~q~~~~~s~I~~f~wH~~s~~er~---il~~~nl~~~Df~V~e~~~pa 341 (783)
T KOG1008|consen 282 -SANN---SVFVNYESKYPVQPNSQCSGIDFFTWHTASPTERQ---ILGVINLQPKDFSVHEEVIPA 341 (783)
T ss_pred -cccc---cceeeecccccccccccccceeecCcCcCCcccee---EEeeccCChhhccchhheecc
Confidence 0000 1111111101222222 46888999987643333 255555555555555444443
No 319
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.91 E-value=0.00017 Score=83.33 Aligned_cols=245 Identities=11% Similarity=0.058 Sum_probs=137.3
Q ss_pred CCCCCCCCcccceEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcE
Q 003822 444 GNHMGDENRSFRPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSL 523 (793)
Q Consensus 444 g~~~~~~~~~~~V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV 523 (793)
|-...+..+.+++++++||| ..-.|+.|-.-|.+.+|...+.+...... .|+.+|..+.|+ ++|+.++++..-|.|
T Consensus 50 GEPqr~Vt~P~hatSLCWHp-e~~vLa~gwe~g~~~v~~~~~~e~htv~~--th~a~i~~l~wS-~~G~~l~t~d~~g~v 125 (1416)
T KOG3617|consen 50 GEPQRDVTYPVHATSLCWHP-EEFVLAQGWEMGVSDVQKTNTTETHTVVE--THPAPIQGLDWS-HDGTVLMTLDNPGSV 125 (1416)
T ss_pred CCCCcccccceehhhhccCh-HHHHHhhccccceeEEEecCCceeeeecc--CCCCCceeEEec-CCCCeEEEcCCCcee
Confidence 44444455677889999999 77889999999999999988766554433 799999999998 899999999999999
Q ss_pred EEEEcCCCCC-cccccccCCceeEecCCCCeEEEEEccCC------CEEEEEECCCcEE-EEECCCCcEEEEEcccCCCC
Q 003822 524 KLYDIRHMPP-SIRGMHYGAGTVTFDEFDQLTSVHVNSMD------ELFLASGYSKNIA-LYDINSGRRLQVFADMHKEH 595 (793)
Q Consensus 524 ~vWDl~~~~~-~~~~~~~~~~~~~~~~~~~V~sv~~s~~~------~~lla~g~Dg~I~-IWDl~tg~~l~~~~~gh~~~ 595 (793)
.+|....... .......|. +...-..+|....++. ...+++|++..+- .++.+......... |.+
T Consensus 126 ~lwr~d~~g~~q~~~~~~he----l~~~ltl~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~~--ksg- 198 (1416)
T KOG3617|consen 126 HLWRYDVIGEIQTSNIMQHE----LNDQLTLWCFRLSYDREEKFKLAKAAVTGDESALDEPFNWKESLAERSDE--KSG- 198 (1416)
T ss_pred EEEEeeeccccccchhhhhH----hhceeeEEEEecCCChHHhhhhhhhhccCchhhhcccccCccchhhcccc--ccC-
Confidence 9998874211 111111010 0001112344443432 1234444443332 33322111111111 211
Q ss_pred eEEEEEcCCCCcEEEEEeCCCeEEEEECCCCCccceEEccCCCCeEEEEEecCCCEEEEEeCCCeEEEEEc-CC------
Q 003822 596 INVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLVSAVDNEVRQLLA-VD------ 668 (793)
Q Consensus 596 V~sv~fspdg~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs~Dg~I~IwDl-~t------ 668 (793)
.|+| ..|..++.+|+|+--|-.. .+..+...... +.+-|.+....+.+...+-++.++-. .+
T Consensus 199 ------v~~g-~~F~~~~~~GtVyyvdq~g-~~~~V~k~dS~---vQmLf~~~~eai~~i~e~lr~~l~~v~~~G~~ee~ 267 (1416)
T KOG3617|consen 199 ------VPKG-TEFLFAGKSGTVYYVDQNG-RQRTVHKLDSE---VQMLFMGYCEAISIIIEFLRDCLIFVLAKGTSEER 267 (1416)
T ss_pred ------CCCC-cEEEEEcCCceEEEEcCCC-cEEEEEEccch---HHHHHhcccceEEEEeeeceeeEEEecCCCchHHh
Confidence 4667 6788888899988877543 33333332211 12223332222222222211111111 11
Q ss_pred ----------------------CcEEEEEeeecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEE
Q 003822 669 ----------------------GRVHLNFGITATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICC 712 (793)
Q Consensus 669 ----------------------g~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWD 712 (793)
|-+...-+........+..++|...+. .++.|...|++ .+|-
T Consensus 268 ~~vk~sgk~GgrqGgiA~sEssGvLr~~eKyg~e~ge~~~c~cY~~~~~-~l~agt~~gnv-~~w~ 331 (1416)
T KOG3617|consen 268 CAVKVSGKLGGRQGGIACSESSGVLRKSEKYGLELGEGILCMCYGEKEI-RLWAGTKEGNV-TIWL 331 (1416)
T ss_pred hhhhhccccCCccCccccccccccccCCcchhhhcCCceEEEEEeccce-EEEecccCCcE-EEee
Confidence 111111111112334677888988888 89999999999 9994
No 320
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=5.1e-05 Score=82.48 Aligned_cols=216 Identities=12% Similarity=0.092 Sum_probs=144.7
Q ss_pred CCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCC--cccccccCCceeEecCCCCeEEEEEccCCCEEEEEEC-CC
Q 003822 496 GAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPP--SIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY-SK 572 (793)
Q Consensus 496 ~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~--~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~-Dg 572 (793)
-|.+.|+.+.- ...+++.+++.||.++.|.-..-.. .+.. ...|...|.+++.+.++-.+.+.+. |.
T Consensus 7 mhrd~i~hv~~--tka~fiiqASlDGh~KFWkKs~isGvEfVKh--------FraHL~~I~sl~~S~dg~L~~Sv~d~Dh 76 (558)
T KOG0882|consen 7 MHRDVITHVFP--TKAKFIIQASLDGHKKFWKKSRISGVEFVKH--------FRAHLGVILSLAVSYDGWLFRSVEDPDH 76 (558)
T ss_pred cccceeeeEee--ehhheEEeeecchhhhhcCCCCccceeehhh--------hHHHHHHHHhhhccccceeEeeccCccc
Confidence 57788888763 5678999999999999997543111 1110 1123355677777666666666676 89
Q ss_pred cEEEEECCCCcEEEEEcccCCCCeEEEEE--cCCCC-cEEEEE-eCCCeEEEEECCCCCccceEEccCCCCeE-EEEEec
Q 003822 573 NIALYDINSGRRLQVFADMHKEHINVVKF--SNHSP-SIFATS-SFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSP 647 (793)
Q Consensus 573 ~I~IWDl~tg~~l~~~~~gh~~~V~sv~f--spdg~-~~LaTg-s~Dg~IrIWDlrt~~~~~~~~l~~~~~~v-sv~fSp 647 (793)
.++++|+.+-..+..++. ......+.| +|... ..++.+ -.+|.+.++|-+...+...+.-.-|..++ .+.+.|
T Consensus 77 s~KvfDvEn~DminmiKL--~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~q 154 (558)
T KOG0882|consen 77 SVKVFDVENFDMINMIKL--VDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQ 154 (558)
T ss_pred ceeEEEeeccchhhhccc--ccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeec
Confidence 999999987655543331 111122333 22211 134433 34788999999887666655555565555 599999
Q ss_pred CCCEEEEEeCCCeEEEEEcCC------CcEEEEEe------eecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCC
Q 003822 648 DDHYLLVSAVDNEVRQLLAVD------GRVHLNFG------ITATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQT 715 (793)
Q Consensus 648 dg~~Lasgs~Dg~I~IwDl~t------g~~~~~l~------~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~t 715 (793)
.+..+++....|.|.-|.... .+....++ ..+.......++.|+|+|. .+.+-+.|..| +++++.+
T Consensus 155 a~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~-qistl~~DrkV-R~F~~Kt 232 (558)
T KOG0882|consen 155 AGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGA-QISTLNPDRKV-RGFVFKT 232 (558)
T ss_pred cccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccC-cccccCcccEE-EEEEecc
Confidence 999999999999999998762 21211111 1223445677899999999 88988899999 9999999
Q ss_pred CcEEEeeeecCC
Q 003822 716 GRRLRDISLEGK 727 (793)
Q Consensus 716 g~~l~~~~L~gh 727 (793)
|+.++ .+...
T Consensus 233 Gklvq--eiDE~ 242 (558)
T KOG0882|consen 233 GKLVQ--EIDEV 242 (558)
T ss_pred chhhh--hhhcc
Confidence 99887 55443
No 321
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.90 E-value=0.0023 Score=74.95 Aligned_cols=208 Identities=13% Similarity=0.148 Sum_probs=123.8
Q ss_pred EEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCc-----EEEEEcCCCCCc
Q 003822 460 EYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGS-----LKLYDIRHMPPS 534 (793)
Q Consensus 460 afsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~Dgt-----V~vWDl~~~~~~ 534 (793)
+|++ ++..+|.|+.+|.|.+.+-. -+.+..+. .+...|...-|.-.+.++|++.+.|+. +++|+++.-+..
T Consensus 30 c~~s-~~~~vvigt~~G~V~~Ln~s-~~~~~~fq--a~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n 105 (933)
T KOG2114|consen 30 CCSS-STGSVVIGTADGRVVILNSS-FQLIRGFQ--AYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKN 105 (933)
T ss_pred EEcC-CCceEEEeeccccEEEeccc-ceeeehhe--ecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCC
Confidence 3667 77899999999999888743 33445555 444444333444344468888777654 899999875321
Q ss_pred c--cccccCCceeE--e-cCCCCeEEEEEccCCCEEEEEECCCcEEEEECC--C-CcEEEEEcccCCCCeEEEEEcCCCC
Q 003822 535 I--RGMHYGAGTVT--F-DEFDQLTSVHVNSMDELFLASGYSKNIALYDIN--S-GRRLQVFADMHKEHINVVKFSNHSP 606 (793)
Q Consensus 535 ~--~~~~~~~~~~~--~-~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~--t-g~~l~~~~~gh~~~V~sv~fspdg~ 606 (793)
- .....+. ..+ + ....++.+++++.+-..+++|-.+|.|..+.=. . ......+......+|+++++..++.
T Consensus 106 ~sP~c~~~~r-i~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~ 184 (933)
T KOG2114|consen 106 NSPQCLYEHR-IFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGK 184 (933)
T ss_pred CCcceeeeee-eeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCc
Confidence 1 0000000 001 1 134678889997776666666689999988421 1 1111222223567999999998884
Q ss_pred cEEEEEeCCCeEEEEECCCCCccceEEccCCCCeE-EEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEE
Q 003822 607 SIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNF 675 (793)
Q Consensus 607 ~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~~~~v-sv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l 675 (793)
..+.+++ -..|.+|.+.... .....+..+.... +..+++....+++++ +..+.+|+....+.-..+
T Consensus 185 s~lFv~T-t~~V~~y~l~gr~-p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf 251 (933)
T KOG2114|consen 185 SVLFVAT-TEQVMLYSLSGRT-PSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAF 251 (933)
T ss_pred eeEEEEe-cceeEEEEecCCC-cceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCcceeeee
Confidence 4333333 3469999998543 2233344444333 466666555466665 457899998755544444
No 322
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.89 E-value=0.00051 Score=77.83 Aligned_cols=117 Identities=14% Similarity=0.182 Sum_probs=84.3
Q ss_pred CEEEEEEeeCCCCEEEEE----EcCCcE----EEEEcCCCCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEECC
Q 003822 500 SVLGLCWLKKYPSKLIAG----SDNGSL----KLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYS 571 (793)
Q Consensus 500 ~V~sv~fs~~~g~~Lasg----s~DgtV----~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~D 571 (793)
...++.|+..++..+.+. +.+|.+ .+|++...+.. ..........+.|.+++++|....++.|+.|
T Consensus 207 dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klq------rvsvtsipL~s~v~~ca~sp~E~kLvlGC~D 280 (545)
T PF11768_consen 207 DPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQ------RVSVTSIPLPSQVICCARSPSEDKLVLGCED 280 (545)
T ss_pred CcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCcee------EEEEEEEecCCcceEEecCcccceEEEEecC
Confidence 446777775556666554 234432 34555443221 1123455667889999999999999999999
Q ss_pred CcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEECCCC
Q 003822 572 KNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQK 626 (793)
Q Consensus 572 g~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~Dg~IrIWDlrt~ 626 (793)
|+|.+||...+..... + ..-.++.++|||+| .++++|+..|.+.+||+.-.
T Consensus 281 gSiiLyD~~~~~t~~~-k--a~~~P~~iaWHp~g-ai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 281 GSIILYDTTRGVTLLA-K--AEFIPTLIAWHPDG-AIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred CeEEEEEcCCCeeeee-e--ecccceEEEEcCCC-cEEEEEcCCceEEEEEeecC
Confidence 9999999987744333 2 44567899999999 89999999999999999764
No 323
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=97.86 E-value=0.00017 Score=75.09 Aligned_cols=222 Identities=16% Similarity=0.217 Sum_probs=137.9
Q ss_pred CCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCC----cccccccCCceeE----ecCCCCeEEEEEccCC--CEEEE
Q 003822 498 MNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPP----SIRGMHYGAGTVT----FDEFDQLTSVHVNSMD--ELFLA 567 (793)
Q Consensus 498 ~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~----~~~~~~~~~~~~~----~~~~~~V~sv~~s~~~--~~lla 567 (793)
...|++|.|- ..|.++++|...|.|.+|.-+.... ......++..... ......|..+.|..++ ..++.
T Consensus 26 ad~ItaVefd-~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 26 ADKITAVEFD-ETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred cceeeEEEec-cccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 4578999985 7889999999999999998665331 1112222222111 1222457788876554 47888
Q ss_pred EECCCcEEEEECCCCc-------------------E-----------------------EEEEcccCCCCeEEEEEcCCC
Q 003822 568 SGYSKNIALYDINSGR-------------------R-----------------------LQVFADMHKEHINVVKFSNHS 605 (793)
Q Consensus 568 ~g~Dg~I~IWDl~tg~-------------------~-----------------------l~~~~~gh~~~V~sv~fspdg 605 (793)
++.|.+|++|.+.... + .+....+|.-.|+++.|+.+.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 9999999999875320 0 011223577888999999887
Q ss_pred CcEEEEEeCCCeEEEEECCCCC-ccceEEccCCC-----C-eEEEEEecC-CCEEEEEeCCCeEEEEEcCCCcE------
Q 003822 606 PSIFATSSFDQDVKLWDLRQKP-IQPCYTASSSK-----G-NVMVCFSPD-DHYLLVSAVDNEVRQLLAVDGRV------ 671 (793)
Q Consensus 606 ~~~LaTgs~Dg~IrIWDlrt~~-~~~~~~l~~~~-----~-~vsv~fSpd-g~~Lasgs~Dg~I~IwDl~tg~~------ 671 (793)
..+++ +.|=.|.+|++.-.. .-.+..+..+. . +.+..|+|. ...+.-.+..|.|++-|++...+
T Consensus 185 -et~lS-aDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~k 262 (460)
T COG5170 185 -ETLLS-ADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKK 262 (460)
T ss_pred -heeee-ccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchh
Confidence 55554 457789999987531 11222233322 1 235889985 44555566689999999984321
Q ss_pred EEEEeee-------cCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCC-cEEEeeeecCC
Q 003822 672 HLNFGIT-------ATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTG-RRLRDISLEGK 727 (793)
Q Consensus 672 ~~~l~~~-------~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg-~~l~~~~L~gh 727 (793)
+...... ......+..+.|+++|+ ||++-+. -++ +|||+... .+++ ++.-|
T Consensus 263 lfe~~~D~v~~~ff~eivsSISD~kFs~ngr-yIlsRdy-ltv-kiwDvnm~k~pik--Ti~~h 321 (460)
T COG5170 263 LFELTIDGVDVDFFEEIVSSISDFKFSDNGR-YILSRDY-LTV-KIWDVNMAKNPIK--TIPMH 321 (460)
T ss_pred hhhhccCcccchhHHHHhhhhcceEEcCCCc-EEEEecc-ceE-EEEecccccCCce--eechH
Confidence 1111111 11123566778999998 8887654 367 99999764 4566 44433
No 324
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=97.86 E-value=0.00032 Score=80.77 Aligned_cols=229 Identities=17% Similarity=0.238 Sum_probs=138.7
Q ss_pred EEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEc----------CCcEEEEEcCCCCCc-cc
Q 003822 468 LMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSD----------NGSLKLYDIRHMPPS-IR 536 (793)
Q Consensus 468 ~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~----------DgtV~vWDl~~~~~~-~~ 536 (793)
++|.|+..|+|.|+|+.++.....+. -|+..|.++.|. ....|++.+. -+.+.+-|+++|... .+
T Consensus 439 LvAvGT~sGTV~vvdvst~~v~~~fs--vht~~VkgleW~--g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR 514 (1062)
T KOG1912|consen 439 LVAVGTNSGTVDVVDVSTNAVAASFS--VHTSLVKGLEWL--GNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFR 514 (1062)
T ss_pred eEEeecCCceEEEEEecchhhhhhhc--ccccceeeeeec--cceeEEEeeeccccccccceeeeEEEEEcccccccccc
Confidence 78899999999999999998877776 789999999996 3334555433 234667788876541 12
Q ss_pred ccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEc----------c---cC-----------
Q 003822 537 GMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFA----------D---MH----------- 592 (793)
Q Consensus 537 ~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~----------~---gh----------- 592 (793)
... -....+|..+..+..+.+++..-.+.-+.+||+++..+++.+. . .|
T Consensus 515 ~l~-------~~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~~~lr~mS~a~P~it~leWsl~~~~si~qk~ls~q 587 (1062)
T KOG1912|consen 515 GLQ-------KPDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLRMLRLMSLALPLITVLEWSLPKHPSIKQKELSKQ 587 (1062)
T ss_pred cCC-------CCCcCcceeeeecccCceEEEEecccchHHHhhccchHHHHHhhcCCcEEEEeecccCCCCcccccchhh
Confidence 111 1233679999998899999999999999999997643221110 0 00
Q ss_pred -------------CCCeE---------------------------EEEEcCCCCcEEEEEeCCCeEEEEECCCCCccceE
Q 003822 593 -------------KEHIN---------------------------VVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCY 632 (793)
Q Consensus 593 -------------~~~V~---------------------------sv~fspdg~~~LaTgs~Dg~IrIWDlrt~~~~~~~ 632 (793)
...+. .++| .+ ..++.|..+|.+++||+.........
T Consensus 588 ~sms~n~vv~ds~es~~~~~~~~a~~~sdgsq~~~a~esfafal~~mAw--k~-d~lv~GD~~GNl~~WDlg~R~SRg~~ 664 (1062)
T KOG1912|consen 588 SSMSENLVVLDSVESRIYHITLSALVVSDGSQVNTAWESFAFALCAMAW--KD-DILVVGDVEGNLVVWDLGRRQSRGVR 664 (1062)
T ss_pred hhhhhceeeeccccchheehhhhhhhhccccchhhHHHHHHHHHHhhhc--cC-CeeEeecccCceeEEecccccccCcc
Confidence 00010 1222 22 47899999999999998665333333
Q ss_pred EccCCCCeE-EEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEE
Q 003822 633 TASSSKGNV-MVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRIC 711 (793)
Q Consensus 633 ~l~~~~~~v-sv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IW 711 (793)
..+.+.... ...+-|....+++--.|+ +-+||.+....+..+.+ .........+.+..... ++...++ .+ |+-
T Consensus 665 d~p~~ra~~l~~~~ipG~~~~lvl~~d~-~~lwdtk~~~lV~siag-~dssfrlldvdlc~~~~--~~l~~d~-~~-Rf~ 738 (1062)
T KOG1912|consen 665 DSPDPRAHSLTFPQIPGDHTTLVLELDW-LPLWDTKADTLVLSIAG-MDSSFRLLDVDLCEKSP--LVLPNDN-KE-RFR 738 (1062)
T ss_pred CCCCchhhheecccCCCCceEEEEecCc-ceecccccceeeeeecc-CCcceEEEEEEecccCc--eecCCCC-ce-eEE
Confidence 333322222 244556433455555454 78999888887777632 11222233344444333 3333333 55 666
Q ss_pred EcCCC
Q 003822 712 CAQTG 716 (793)
Q Consensus 712 Dv~tg 716 (793)
.+...
T Consensus 739 ~m~mk 743 (1062)
T KOG1912|consen 739 VMPMK 743 (1062)
T ss_pred ecccc
Confidence 55443
No 325
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=97.85 E-value=6.2e-05 Score=54.92 Aligned_cols=38 Identities=24% Similarity=0.502 Sum_probs=34.0
Q ss_pred eEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEE
Q 003822 487 NIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYD 527 (793)
Q Consensus 487 ~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWD 527 (793)
+++..+. +|.+.|.+++|+ +++++|++|+.|++|++||
T Consensus 2 ~~~~~~~--~h~~~i~~i~~~-~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFR--GHSSSINSIAWS-PDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEE--SSSSSEEEEEEE-TTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEc--CCCCcEEEEEEe-cccccceeeCCCCEEEEEC
Confidence 4566666 999999999998 7899999999999999997
No 326
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.85 E-value=5.7e-06 Score=93.18 Aligned_cols=203 Identities=19% Similarity=0.289 Sum_probs=129.1
Q ss_pred eEEEEEeCC-CCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEE----cCCcEEEEEcCC
Q 003822 456 PRQFEYHPS-ISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGS----DNGSLKLYDIRH 530 (793)
Q Consensus 456 V~~vafsP~-d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs----~DgtV~vWDl~~ 530 (793)
+.|+++.-. +..+++.|..+|.|.+-......-...-...+|....++++|++-+.+.||+|- .|..+.+||+.+
T Consensus 59 ~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s 138 (783)
T KOG1008|consen 59 VKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINS 138 (783)
T ss_pred ceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceeccc
Confidence 677777653 336889999999999988764332211112378889999999987888888873 467799999998
Q ss_pred CCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCc-EEEEEcccCCCCeEEEEEcCCCCcEE
Q 003822 531 MPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGR-RLQVFADMHKEHINVVKFSNHSPSIF 609 (793)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~-~l~~~~~gh~~~V~sv~fspdg~~~L 609 (793)
.-....... ...-.......+++|..+...+++|.....+.++|++... ....+ .+..+..+...|-.++++
T Consensus 139 ~ltvPke~~----~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv---nTk~vqG~tVdp~~~nY~ 211 (783)
T KOG1008|consen 139 LLTVPKESP----LFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV---NTKYVQGITVDPFSPNYF 211 (783)
T ss_pred ccCCCcccc----ccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh---hhhhcccceecCCCCCce
Confidence 632111100 0000122445688887666677777788899999998322 22222 344566788888665788
Q ss_pred EEEeCCCeEEEEE-CCCCCccceEEccCCC-----CeEEEEEecCCC-EEEEEe-CCCeEEEEEcC
Q 003822 610 ATSSFDQDVKLWD-LRQKPIQPCYTASSSK-----GNVMVCFSPDDH-YLLVSA-VDNEVRQLLAV 667 (793)
Q Consensus 610 aTgs~Dg~IrIWD-lrt~~~~~~~~l~~~~-----~~vsv~fSpdg~-~Lasgs-~Dg~I~IwDl~ 667 (793)
++.. ||.|.+|| .+.-+ .++..+.... ....++|+|... .+++.+ ..++|+++|+.
T Consensus 212 cs~~-dg~iAiwD~~rnie-npl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 212 CSNS-DGDIAIWDTYRNIE-NPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred eccc-cCceeeccchhhhc-cHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 7666 99999999 44321 2222222222 245699999532 344444 45789999865
No 327
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.76 E-value=0.047 Score=56.40 Aligned_cols=194 Identities=10% Similarity=0.029 Sum_probs=114.7
Q ss_pred EeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCccccccc
Q 003822 461 YHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHY 540 (793)
Q Consensus 461 fsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~~~~~~ 540 (793)
.-|+...+++.|+..+.+.--|..+|+.+..... ..+|.+-+.. -|++++.|...|.+++.++.++...+..
T Consensus 18 V~~dskT~v~igSHs~~~~avd~~sG~~~We~il---g~RiE~sa~v--vgdfVV~GCy~g~lYfl~~~tGs~~w~f--- 89 (354)
T KOG4649|consen 18 VCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAIL---GVRIECSAIV--VGDFVVLGCYSGGLYFLCVKTGSQIWNF--- 89 (354)
T ss_pred EecCCceEEEEecCCceEEEecCCCCcEEeehhh---CceeeeeeEE--ECCEEEEEEccCcEEEEEecchhheeee---
Confidence 3444567888999999999999999988765432 2345554433 4778999999999999999998652221
Q ss_pred CCceeEecCCCCeEE-EEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeCCCeEE
Q 003822 541 GAGTVTFDEFDQLTS-VHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVK 619 (793)
Q Consensus 541 ~~~~~~~~~~~~V~s-v~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~Dg~Ir 619 (793)
...+.|.+ ....++++.+..++.|++.+..|.++..++.+.+- -.+...+-+..|-. ..|..+...|.+.
T Consensus 90 -------~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskc-gG~~f~sP~i~~g~-~sly~a~t~G~vl 160 (354)
T KOG4649|consen 90 -------VILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKC-GGGTFVSPVIAPGD-GSLYAAITAGAVL 160 (354)
T ss_pred -------eehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEeccc-CCceeccceecCCC-ceEEEEeccceEE
Confidence 11112211 12235788888888999999999999999988772 22222334455522 2344444455544
Q ss_pred EEECCCCCccceEEccCCCCeEE--EEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEE
Q 003822 620 LWDLRQKPIQPCYTASSSKGNVM--VCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNF 675 (793)
Q Consensus 620 IWDlrt~~~~~~~~l~~~~~~vs--v~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l 675 (793)
--..+..............++.. ++ -+.++..+..||.+.-+| ..|+.+..+
T Consensus 161 avt~~~~~~~~~w~~~~~~PiF~splc---v~~sv~i~~VdG~l~~f~-~sG~qvwr~ 214 (354)
T KOG4649|consen 161 AVTKNPYSSTEFWAATRFGPIFASPLC---VGSSVIITTVDGVLTSFD-ESGRQVWRP 214 (354)
T ss_pred EEccCCCCcceehhhhcCCccccCcee---ccceEEEEEeccEEEEEc-CCCcEEEee
Confidence 33333321111111111111111 11 245566666677776666 555555444
No 328
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.75 E-value=0.00052 Score=79.69 Aligned_cols=191 Identities=16% Similarity=0.119 Sum_probs=122.9
Q ss_pred CCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEECCCCCccc
Q 003822 551 DQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQP 630 (793)
Q Consensus 551 ~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~Dg~IrIWDlrt~~~~~ 630 (793)
+.+.|+++ .+..++.|..+|.|++++.. +.+ .+.. .|... ..+| .+++||+.||+|.|..+-+.....
T Consensus 40 D~is~~av--~~~~~~~GtH~g~v~~~~~~-~~~-~~~~-~~s~~------~~~G-ey~asCS~DGkv~I~sl~~~~~~~ 107 (846)
T KOG2066|consen 40 DAISCCAV--HDKFFALGTHRGAVYLTTCQ-GNP-KTNF-DHSSS------ILEG-EYVASCSDDGKVVIGSLFTDDEIT 107 (846)
T ss_pred hHHHHHHh--hcceeeeccccceEEEEecC-Ccc-cccc-ccccc------ccCC-ceEEEecCCCcEEEeeccCCccce
Confidence 45666665 46677777789999999877 444 3332 25443 5566 899999999999999988875444
Q ss_pred eEEccCCCCeEEEEEecC-----CCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCCCeEEEEEeCCC
Q 003822 631 CYTASSSKGNVMVCFSPD-----DHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNGRDYIVSGSCDE 705 (793)
Q Consensus 631 ~~~l~~~~~~vsv~fSpd-----g~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg 705 (793)
.+.+ +..+-+++++|+ .+.+++|+.-| +.++.-+=-...... ....+.+.+.++.|..+ +||=++++|
T Consensus 108 ~~df--~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v-~l~~~eG~I~~i~W~g~---lIAWand~G 180 (846)
T KOG2066|consen 108 QYDF--KRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV-VLSEGEGPIHSIKWRGN---LIAWANDDG 180 (846)
T ss_pred eEec--CCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce-eeecCccceEEEEecCc---EEEEecCCC
Confidence 4444 445667999997 57789999888 666542211111111 12345667777777544 788887776
Q ss_pred cEEEEEEcCCCcEEEeeeecCCCCCccceeeeccCCccccCCccEEEEEEcCCCCceeeEeeEEEeCCCcEEEEcCCCC
Q 003822 706 HVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKSEIVKVNLLASTDHCDKECSHGQH 784 (793)
Q Consensus 706 ~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~~~~iv~~~ltaS~Dg~VkvW~~~~~ 784 (793)
| +|||+.+++.+. .++-.. +..+.+.|+. .+.|.+. ..++-|..-+|++-...++
T Consensus 181 -v-~vyd~~~~~~l~--~i~~p~-------~~~R~e~fpp------hl~W~~~-------~~LVIGW~d~v~i~~I~~~ 235 (846)
T KOG2066|consen 181 -V-KVYDTPTRQRLT--NIPPPS-------QSVRPELFPP------HLHWQDE-------DRLVIGWGDSVKICSIKKR 235 (846)
T ss_pred -c-EEEeccccceee--ccCCCC-------CCCCcccCCC------ceEecCC-------CeEEEecCCeEEEEEEecc
Confidence 5 899999999988 333221 2222233333 4677775 3445566667788777633
No 329
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.74 E-value=0.006 Score=70.94 Aligned_cols=136 Identities=10% Similarity=-0.032 Sum_probs=94.9
Q ss_pred CCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEe-------------------------------------
Q 003822 571 SKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSS------------------------------------- 613 (793)
Q Consensus 571 Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs------------------------------------- 613 (793)
.+.+.+.|..+.+...++. -.+....++++|+| .++++.+
T Consensus 214 ~~~vSvID~etmeV~~qV~--Vdgnpd~v~~spdG-k~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~ 290 (635)
T PRK02888 214 RSLFTAVDAETMEVAWQVM--VDGNLDNVDTDYDG-KYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKF 290 (635)
T ss_pred eEEEEEEECccceEEEEEE--eCCCcccceECCCC-CEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCE
Confidence 5778888888877777765 23344567788877 4444443
Q ss_pred ---CCCeEEEEECCCC---CccceEEccCCCCeEEEEEecCCCEEEEEeC-CCeEEEEEcCCCcE------------EEE
Q 003822 614 ---FDQDVKLWDLRQK---PIQPCYTASSSKGNVMVCFSPDDHYLLVSAV-DNEVRQLLAVDGRV------------HLN 674 (793)
Q Consensus 614 ---~Dg~IrIWDlrt~---~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs~-Dg~I~IwDl~tg~~------------~~~ 674 (793)
.++.|.+.|.++. ....+..++....+-.+.++|||+++++++. ++++.|+|+.+.+. +.+
T Consensus 291 ~~V~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvae 370 (635)
T PRK02888 291 KTIGGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAE 370 (635)
T ss_pred EEECCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEe
Confidence 1245778887761 1133444555555666999999999988775 88999999987552 333
Q ss_pred EeeecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCC
Q 003822 675 FGITATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQT 715 (793)
Q Consensus 675 l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~t 715 (793)
.. ........+|.++|. ...|-..|..| -.|++.+
T Consensus 371 ve----vGlGPLHTaFDg~G~-aytslf~dsqv-~kwn~~~ 405 (635)
T PRK02888 371 PE----LGLGPLHTAFDGRGN-AYTTLFLDSQI-VKWNIEA 405 (635)
T ss_pred ec----cCCCcceEEECCCCC-EEEeEeeccee-EEEehHH
Confidence 32 344566788999987 77888889999 8999987
No 330
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.66 E-value=3.4e-05 Score=89.38 Aligned_cols=160 Identities=14% Similarity=0.147 Sum_probs=116.9
Q ss_pred CCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeCCC-eEEEEECCCCC
Q 003822 549 EFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQ-DVKLWDLRQKP 627 (793)
Q Consensus 549 ~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~Dg-~IrIWDlrt~~ 627 (793)
+....+|++|+...+.+++|...|.|++|++.+|....... +|+.+|+-+.-+.+|...|.+++... ...+|++.. .
T Consensus 1100 ~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~n-cH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s-~ 1177 (1516)
T KOG1832|consen 1100 ETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVN-CHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASS-T 1177 (1516)
T ss_pred cccceeeEEeecCCceEEeeeccceEEEEEccCcccccccc-ccccccccccccCCcceeeeeccccCchHHHhcccc-c
Confidence 33568999998889999999999999999999999999988 79999999999999944444444433 478999876 2
Q ss_pred ccceEEccCCCCeEEEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEE-eeecCCCCCcEEEEEeeCCCeEEEEEeCCCc
Q 003822 628 IQPCYTASSSKGNVMVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNF-GITATGSSQNYTRSYYLNGRDYIVSGSCDEH 706 (793)
Q Consensus 628 ~~~~~~l~~~~~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l-~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~ 706 (793)
..+..++.+ --++.|+..-..-+.|+......+||+.++..+.++ ..............|+|++. +|+ .||
T Consensus 1178 ~~~~Hsf~e---d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~-LIl---ndG- 1249 (1516)
T KOG1832|consen 1178 GGPRHSFDE---DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDT-LIL---NDG- 1249 (1516)
T ss_pred cCccccccc---cceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcc-eEe---eCc-
Confidence 233444332 225788887666677776677899999999877663 22222223334567999997 554 466
Q ss_pred EEEEEEcCCCcEEE
Q 003822 707 VVRICCAQTGRRLR 720 (793)
Q Consensus 707 II~IWDv~tg~~l~ 720 (793)
-+||++..+.++
T Consensus 1250 --vLWDvR~~~aIh 1261 (1516)
T KOG1832|consen 1250 --VLWDVRIPEAIH 1261 (1516)
T ss_pred --eeeeeccHHHHh
Confidence 479998887666
No 331
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.64 E-value=0.034 Score=65.26 Aligned_cols=251 Identities=13% Similarity=0.153 Sum_probs=144.2
Q ss_pred CEEEEEeCCCeEEEEECCCCeEEEEEeccCCCC--CEEEEEEeeCCCCEEEEEEc------CCcEEEEEcCCCCCccccc
Q 003822 467 CLMVFGTLDGEIVVVNHENENIVSYIPSFGAMN--SVLGLCWLKKYPSKLIAGSD------NGSLKLYDIRHMPPSIRGM 538 (793)
Q Consensus 467 ~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~--~V~sv~fs~~~g~~Lasgs~------DgtV~vWDl~~~~~~~~~~ 538 (793)
..++.++.|+.+.-.|..+|+.+.......+.. .+++--.. .+ ..++++.. +|.|.-+|.++++......
T Consensus 121 ~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v-~~-g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~ 198 (527)
T TIGR03075 121 GKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLV-VK-GKVITGISGGEFGVRGYVTAYDAKTGKLVWRRY 198 (527)
T ss_pred CEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEE-EC-CEEEEeecccccCCCcEEEEEECCCCceeEecc
Confidence 467788889999999999999987665422221 12210000 13 35555532 6889999999988754422
Q ss_pred ccCCce----------------e-----EecC-CCCeE-EEEEccCCCEEEEEE-C----CC-----------cEEEEEC
Q 003822 539 HYGAGT----------------V-----TFDE-FDQLT-SVHVNSMDELFLASG-Y----SK-----------NIALYDI 579 (793)
Q Consensus 539 ~~~~~~----------------~-----~~~~-~~~V~-sv~~s~~~~~lla~g-~----Dg-----------~I~IWDl 579 (793)
...... . .+.+ ...++ .+.+.+..+.++.+. + ++ .|.-.|+
T Consensus 199 ~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~ 278 (527)
T TIGR03075 199 TVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDP 278 (527)
T ss_pred CcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEcc
Confidence 211100 0 0111 11222 235555556665554 2 12 6778899
Q ss_pred CCCcEEEEEcccCCC--------CeEEEEEcCCCC--cEEEEEeCCCeEEEEECCCCCccc--------eE--Ec-----
Q 003822 580 NSGRRLQVFADMHKE--------HINVVKFSNHSP--SIFATSSFDQDVKLWDLRQKPIQP--------CY--TA----- 634 (793)
Q Consensus 580 ~tg~~l~~~~~gh~~--------~V~sv~fspdg~--~~LaTgs~Dg~IrIWDlrt~~~~~--------~~--~l----- 634 (793)
+||+....++..|.+ ...-+....+|. ..++.+..+|.+.+.|.++++... .. .+
T Consensus 279 ~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~g 358 (527)
T TIGR03075 279 DTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKTG 358 (527)
T ss_pred ccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCcccccccCCCCC
Confidence 999999888742211 111122324553 478899999999999999875420 00 00
Q ss_pred ----------------------cCCCCe---EEEEEecCCCEEEEEeCC-------------------------------
Q 003822 635 ----------------------SSSKGN---VMVCFSPDDHYLLVSAVD------------------------------- 658 (793)
Q Consensus 635 ----------------------~~~~~~---vsv~fSpdg~~Lasgs~D------------------------------- 658 (793)
++..+- -.++++|+..++++...+
T Consensus 359 ~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~ 438 (527)
T TIGR03075 359 RPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPDD 438 (527)
T ss_pred CCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCCCC
Confidence 000000 125677766665544332
Q ss_pred --CeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEEeeeec
Q 003822 659 --NEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRLRDISLE 725 (793)
Q Consensus 659 --g~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~ 725 (793)
|.+.-+|+.+|+..-........ ..-...-.+. +++.++.||.+ +.+|.+||+.+.++.+.
T Consensus 439 ~~g~l~AiD~~tGk~~W~~~~~~p~----~~~~l~t~g~-lvf~g~~~G~l-~a~D~~TGe~lw~~~~g 501 (527)
T TIGR03075 439 HMGSLIAWDPITGKIVWEHKEDFPL----WGGVLATAGD-LVFYGTLEGYF-KAFDAKTGEELWKFKTG 501 (527)
T ss_pred CceeEEEEeCCCCceeeEecCCCCC----CCcceEECCc-EEEEECCCCeE-EEEECCCCCEeEEEeCC
Confidence 45777888888876655421111 1111222444 67778889999 99999999999955553
No 332
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.64 E-value=0.035 Score=64.60 Aligned_cols=241 Identities=11% Similarity=0.117 Sum_probs=137.8
Q ss_pred CCEEEEEeCCCeEEEEECCCCeEEEEEeccCC----CCCEE--EEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcccccc
Q 003822 466 SCLMVFGTLDGEIVVVNHENENIVSYIPSFGA----MNSVL--GLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMH 539 (793)
Q Consensus 466 ~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h----~~~V~--sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~~~~~ 539 (793)
+..++.++.++.|.-.|..+|+.+........ ...+. .+.. .++..++.++.+|.|.-+|.++++...+...
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~--~~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~ 138 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAY--WDPRKVFFGTFDGRLVALDAETGKQVWKFGN 138 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEE--ccCCeEEEecCCCeEEEEECCCCCEeeeecC
Confidence 34677788889999999999988766653221 00111 1121 1226888888999999999999887544322
Q ss_pred cCCceeEecCCCCeEEEEEccCCCEEEEEE---------CCCcEEEEECCCCcEEEEEcccCCC----------------
Q 003822 540 YGAGTVTFDEFDQLTSVHVNSMDELFLASG---------YSKNIALYDINSGRRLQVFADMHKE---------------- 594 (793)
Q Consensus 540 ~~~~~~~~~~~~~V~sv~~s~~~~~lla~g---------~Dg~I~IWDl~tg~~l~~~~~gh~~---------------- 594 (793)
.......+.... +..+ .++.+++++ .++.+..+|..+|+.+..+......
T Consensus 139 ~~~~~~~~~i~s---sP~v--~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~ 213 (488)
T cd00216 139 NDQVPPGYTMTG---APTI--VKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGP 213 (488)
T ss_pred CCCcCcceEecC---CCEE--ECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecC
Confidence 111000000000 1111 134555543 3678999999999998887632111
Q ss_pred ---Ce-EEEEEcCCCCcEEEEEeCCC------------------eEEEEECCCCCccceEEccCCCC-----eEEEEEe-
Q 003822 595 ---HI-NVVKFSNHSPSIFATSSFDQ------------------DVKLWDLRQKPIQPCYTASSSKG-----NVMVCFS- 646 (793)
Q Consensus 595 ---~V-~sv~fspdg~~~LaTgs~Dg------------------~IrIWDlrt~~~~~~~~l~~~~~-----~vsv~fS- 646 (793)
.+ ...++.+.+ ..++.++.++ .|.-+|..+++..=.+....+.. .....+.
T Consensus 214 ~g~~vw~~pa~d~~~-g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~ 292 (488)
T cd00216 214 GGGTSWASPTYDPKT-NLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLAD 292 (488)
T ss_pred CCCCccCCeeEeCCC-CEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEe
Confidence 01 123444444 4666676554 68888998885432222222211 0011111
Q ss_pred ---cCCC---EEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCCCeEEEEE------------------e
Q 003822 647 ---PDDH---YLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNGRDYIVSG------------------S 702 (793)
Q Consensus 647 ---pdg~---~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sg------------------s 702 (793)
-+|. .+++++.+|.+..+|..+|+.+-...... ...+..| + .+..+ .
T Consensus 293 ~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~------~~~~~~~-~--~vyv~~~~~~~~~~~~~~~~~~~~ 363 (488)
T cd00216 293 IKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVE------QPMAYDP-G--LVYLGAFHIPLGLPPQKKKRCKKP 363 (488)
T ss_pred ccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeec------cccccCC-c--eEEEccccccccCcccccCCCCCC
Confidence 1343 67888899999999999999887765321 1122233 2 22222 2
Q ss_pred CCCcEEEEEEcCCCcEEEeeee
Q 003822 703 CDEHVVRICCAQTGRRLRDISL 724 (793)
Q Consensus 703 ~Dg~II~IWDv~tg~~l~~~~L 724 (793)
.+|.+ .-.|..+|+.+....+
T Consensus 364 ~~G~l-~AlD~~tG~~~W~~~~ 384 (488)
T cd00216 364 GKGGL-AALDPKTGKVVWEKRE 384 (488)
T ss_pred CceEE-EEEeCCCCcEeeEeeC
Confidence 45777 8889999999884333
No 333
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.60 E-value=0.022 Score=61.75 Aligned_cols=246 Identities=11% Similarity=0.037 Sum_probs=140.3
Q ss_pred EEEeCCCCCEEEEEe----------CCCeEEEEECCCCeEEEEEeccCC-CCCE----EEEEEeeCCCCEEEEEE--cCC
Q 003822 459 FEYHPSISCLMVFGT----------LDGEIVVVNHENENIVSYIPSFGA-MNSV----LGLCWLKKYPSKLIAGS--DNG 521 (793)
Q Consensus 459 vafsP~d~~~Lasgs----------~DG~I~VWd~~t~~~i~~l~~~~h-~~~V----~sv~fs~~~g~~Lasgs--~Dg 521 (793)
+..+| +++.+++++ ..-.|.+||..+-.....+.+... ...+ ...+.+ .++++++... ---
T Consensus 41 ~~~sp-dgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls-~dgk~~~V~N~TPa~ 118 (342)
T PF06433_consen 41 VALSP-DGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALS-ADGKFLYVQNFTPAT 118 (342)
T ss_dssp EEE-T-TSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE--TTSSEEEEEEESSSE
T ss_pred eeECC-CCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEc-cCCcEEEEEccCCCC
Confidence 66788 777777643 345699999999988887766442 1111 112333 4555555432 234
Q ss_pred cEEEEEcCCCCCcccccccCCceeEecCCCCeEEEEEccC-CCEEEEEECCCcEEEEECC-CCcEEEEEcc---cCCCCe
Q 003822 522 SLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSM-DELFLASGYSKNIALYDIN-SGRRLQVFAD---MHKEHI 596 (793)
Q Consensus 522 tV~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~-~~~lla~g~Dg~I~IWDl~-tg~~l~~~~~---gh~~~V 596 (793)
+|.|-|+..++.. ..... + -|..+.|. +..|.+-+.||.+.-..+. .|+...+... .-..++
T Consensus 119 SVtVVDl~~~kvv-~ei~~-----------P-GC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~ 185 (342)
T PF06433_consen 119 SVTVVDLAAKKVV-GEIDT-----------P-GCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPL 185 (342)
T ss_dssp EEEEEETTTTEEE-EEEEG-----------T-SEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B
T ss_pred eEEEEECCCCcee-eeecC-----------C-CEEEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCccc
Confidence 5666666654331 11110 1 11111233 3567788899999988888 4665433211 112222
Q ss_pred E-EEEEcCCCCcEEEEEeCCCeEEEEECCCCCccceEEccC------CCCe-----EEEEEecCCCEEEEEeC---C---
Q 003822 597 N-VVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASS------SKGN-----VMVCFSPDDHYLLVSAV---D--- 658 (793)
Q Consensus 597 ~-sv~fspdg~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~------~~~~-----vsv~fSpdg~~Lasgs~---D--- 658 (793)
. .-++...+ ..++--+.+|.|+--|+............- ..++ --+++++....|++.-. +
T Consensus 186 f~~~~~~~~~-~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsH 264 (342)
T PF06433_consen 186 FEHPAYSRDG-GRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSH 264 (342)
T ss_dssp -S--EEETTT-TEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-T
T ss_pred ccccceECCC-CeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCc
Confidence 2 33444444 345557889999998887764333222211 0111 13788876666665321 1
Q ss_pred ----CeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCCCeEEEEEe-CCCcEEEEEEcCCCcEEEeeeecCC
Q 003822 659 ----NEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNGRDYIVSGS-CDEHVVRICCAQTGRRLRDISLEGK 727 (793)
Q Consensus 659 ----g~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs-~Dg~II~IWDv~tg~~l~~~~L~gh 727 (793)
..|-++|+.+++.+..+... ..+.++..+.+...+|++.+ .++.+ .+||..+|+.++ ++++-
T Consensus 265 KdpgteVWv~D~~t~krv~Ri~l~----~~~~Si~Vsqd~~P~L~~~~~~~~~l-~v~D~~tGk~~~--~~~~l 331 (342)
T PF06433_consen 265 KDPGTEVWVYDLKTHKRVARIPLE----HPIDSIAVSQDDKPLLYALSAGDGTL-DVYDAATGKLVR--SIEQL 331 (342)
T ss_dssp TS-EEEEEEEETTTTEEEEEEEEE----EEESEEEEESSSS-EEEEEETTTTEE-EEEETTT--EEE--EE---
T ss_pred cCCceEEEEEECCCCeEEEEEeCC----CccceEEEccCCCcEEEEEcCCCCeE-EEEeCcCCcEEe--ehhcc
Confidence 15888899999999988742 23558888999988887765 46788 999999999999 65543
No 334
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.51 E-value=0.00084 Score=77.93 Aligned_cols=195 Identities=11% Similarity=0.139 Sum_probs=119.5
Q ss_pred eEEEEEeCCCCCEEEEEe----CCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCC
Q 003822 456 PRQFEYHPSISCLMVFGT----LDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHM 531 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs----~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~ 531 (793)
.+-.+||| ...++|+++ ..|.|.||- ++|++-..... +-.+++++|+ |..-.|+.|-.-|.+.+|...+.
T Consensus 18 sti~SWHP-sePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~---P~hatSLCWH-pe~~vLa~gwe~g~~~v~~~~~~ 91 (1416)
T KOG3617|consen 18 STISSWHP-SEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTY---PVHATSLCWH-PEEFVLAQGWEMGVSDVQKTNTT 91 (1416)
T ss_pred ccccccCC-CCceeEEEEecCCCCceEEEEe-cCCCCCccccc---ceehhhhccC-hHHHHHhhccccceeEEEecCCc
Confidence 34468999 777888876 368899884 56665443332 2246779998 56667888888899999998875
Q ss_pred CCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEc-ccC--CCC--eEEEEEcCCCC
Q 003822 532 PPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFA-DMH--KEH--INVVKFSNHSP 606 (793)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~-~gh--~~~--V~sv~fspdg~ 606 (793)
+. ..+...|..+|..+.|+++|+.++++..-|.|.+|.......++... -.| ... ..|...++++.
T Consensus 92 e~---------htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~E 162 (1416)
T KOG3617|consen 92 ET---------HTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDRE 162 (1416)
T ss_pred ee---------eeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChH
Confidence 43 23445677889999999999999999889999999776322222111 002 122 23444455532
Q ss_pred -----cEEEEEeCCCeEE-EEECCCCCccceEEccCCCCeEEEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEE
Q 003822 607 -----SIFATSSFDQDVK-LWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNF 675 (793)
Q Consensus 607 -----~~LaTgs~Dg~Ir-IWDlrt~~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l 675 (793)
...++.+.+..+- .++.+..... .. ..-.=.|+|..++.++.+|+|+-.| ..|+.....
T Consensus 163 e~~~laKaaVtgDe~alD~~fnwk~~~a~--rs-------~~ksgv~~g~~F~~~~~~GtVyyvd-q~g~~~~V~ 227 (1416)
T KOG3617|consen 163 EKFKLAKAAVTGDESALDEPFNWKESLAE--RS-------DEKSGVPKGTEFLFAGKSGTVYYVD-QNGRQRTVH 227 (1416)
T ss_pred HhhhhhhhhccCchhhhcccccCccchhh--cc-------ccccCCCCCcEEEEEcCCceEEEEc-CCCcEEEEE
Confidence 1223333333332 3333211000 00 0012357888889999999998777 345554433
No 335
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.51 E-value=0.065 Score=61.22 Aligned_cols=119 Identities=13% Similarity=0.113 Sum_probs=84.0
Q ss_pred CeEEEEEcCCCCcEEEEEe----CCCe----EEEEECCCCCcc--ceEEccCCCCeEEEEEecCCCEEEEEeCCCeEEEE
Q 003822 595 HINVVKFSNHSPSIFATSS----FDQD----VKLWDLRQKPIQ--PCYTASSSKGNVMVCFSPDDHYLLVSAVDNEVRQL 664 (793)
Q Consensus 595 ~V~sv~fspdg~~~LaTgs----~Dg~----IrIWDlrt~~~~--~~~~l~~~~~~vsv~fSpdg~~Lasgs~Dg~I~Iw 664 (793)
...++.|+...++.+.|.. .+|. -.+|+...++.+ .+..++-...+++++++|+...++.|+.||+|.+|
T Consensus 207 dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLy 286 (545)
T PF11768_consen 207 DPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILY 286 (545)
T ss_pred CcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEE
Confidence 3456666654445554432 2333 456666554333 34455666678889999999999999999999999
Q ss_pred EcCCCcEEEEEeeecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEE
Q 003822 665 LAVDGRVHLNFGITATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRLR 720 (793)
Q Consensus 665 Dl~tg~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~ 720 (793)
|...+..... ...-.+..++|+|+|. ++++|+..|.+ .+||+.-+....
T Consensus 287 D~~~~~t~~~-----ka~~~P~~iaWHp~ga-i~~V~s~qGel-Q~FD~ALspi~~ 335 (545)
T PF11768_consen 287 DTTRGVTLLA-----KAEFIPTLIAWHPDGA-IFVVGSEQGEL-QCFDMALSPIKM 335 (545)
T ss_pred EcCCCeeeee-----eecccceEEEEcCCCc-EEEEEcCCceE-EEEEeecCccce
Confidence 9887643222 1234577899999999 99999999999 999997665443
No 336
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.51 E-value=0.077 Score=59.72 Aligned_cols=246 Identities=12% Similarity=0.105 Sum_probs=156.4
Q ss_pred eEEEEEeCCCC-CEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCc
Q 003822 456 PRQFEYHPSIS-CLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS 534 (793)
Q Consensus 456 V~~vafsP~d~-~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~ 534 (793)
+..+...| ++ +..++-.....+.+.+............ +- ..-..++.++...+..++...+..|.+.|..+....
T Consensus 33 ~~~v~~~~-~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~-g~-~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~ 109 (381)
T COG3391 33 PGGVAVNP-DGTQVYVANSGSNDVSVIDATSNTVTQSLSV-GG-VYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVL 109 (381)
T ss_pred CceeEEcC-ccCEEEEEeecCceeeecccccceeeeeccC-CC-ccccceeeCCCCCeEEEecCCCCeEEEEcCccccee
Confidence 55677777 44 4444444334555555552222222211 11 233455655333345566666789999996664431
Q ss_pred ccccccCCceeEecCCCCeEEEEEccCCCEEEEEEC---CCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEE
Q 003822 535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY---SKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFAT 611 (793)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~---Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaT 611 (793)
... ........+++.+.++.+.++.. ++++.+.|..+++....... -..+ ..+++.|+|...+++
T Consensus 110 ~~~----------~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~v-G~~P-~~~a~~p~g~~vyv~ 177 (381)
T COG3391 110 GSI----------PVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPV-GNTP-TGVAVDPDGNKVYVT 177 (381)
T ss_pred eEe----------eeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEec-CCCc-ceEEECCCCCeEEEE
Confidence 111 11124678889888888888764 68999999999998888653 2233 899999999556666
Q ss_pred EeCCCeEEEEECCCCCccc-e--EEccCCCCeEEEEEecCCCEEEEEeCC---CeEEEEEcCCCcEEEEEeeecCCCCCc
Q 003822 612 SSFDQDVKLWDLRQKPIQP-C--YTASSSKGNVMVCFSPDDHYLLVSAVD---NEVRQLLAVDGRVHLNFGITATGSSQN 685 (793)
Q Consensus 612 gs~Dg~IrIWDlrt~~~~~-~--~~l~~~~~~vsv~fSpdg~~Lasgs~D---g~I~IwDl~tg~~~~~l~~~~~~~~~v 685 (793)
-..++.|.+.|........ . ........+..+.++|+|.++.+.... +.+...|..++.....-. ..... ..
T Consensus 178 ~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~-~~~~~-~~ 255 (381)
T COG3391 178 NSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDL-PVGSG-AP 255 (381)
T ss_pred ecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEecc-ccccC-CC
Confidence 6688999999977653221 0 012233344568999999988776654 589999999887755421 11222 56
Q ss_pred EEEEEeeCCCeEEEEE-eCCCcEEEEEEcCCCcEEE
Q 003822 686 YTRSYYLNGRDYIVSG-SCDEHVVRICCAQTGRRLR 720 (793)
Q Consensus 686 ~s~afspdg~~~L~Sg-s~Dg~II~IWDv~tg~~l~ 720 (793)
..+...|+|. ++.+. +..+.+ .+-|..+.+...
T Consensus 256 ~~v~~~p~g~-~~yv~~~~~~~V-~vid~~~~~v~~ 289 (381)
T COG3391 256 RGVAVDPAGK-AAYVANSQGGTV-SVIDGATDRVVK 289 (381)
T ss_pred CceeECCCCC-EEEEEecCCCeE-EEEeCCCCceee
Confidence 6788999999 55555 444677 999999888877
No 337
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.50 E-value=0.01 Score=66.75 Aligned_cols=233 Identities=15% Similarity=0.124 Sum_probs=123.6
Q ss_pred ceEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEE-------------------------EE----------------e
Q 003822 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVS-------------------------YI----------------P 493 (793)
Q Consensus 455 ~V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~-------------------------~l----------------~ 493 (793)
.|+.+.|.+ +..-|++|...|.|.||.....+... .+ -
T Consensus 3 ~v~~vs~a~-~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAP-ETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEET-TTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEecC-CCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 489999999 77789999999999999653211100 00 0
Q ss_pred ccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcccccccCCceeEecCCCCeEEEEEcc----CC----CEE
Q 003822 494 SFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNS----MD----ELF 565 (793)
Q Consensus 494 ~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~----~~----~~l 565 (793)
.....++|++++.+ +=.+++.|..+|.+.|.|++............ ..........|+++.|.- .+ -.+
T Consensus 82 ~~~~~g~vtal~~S--~iGFvaigy~~G~l~viD~RGPavI~~~~i~~-~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L 158 (395)
T PF08596_consen 82 LDAKQGPVTALKNS--DIGFVAIGYESGSLVVIDLRGPAVIYNENIRE-SFLSKSSSSYVTSIEFSVMTLGGDGYSSICL 158 (395)
T ss_dssp E---S-SEEEEEE---BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG---T-SS----EEEEEEEEEE-TTSSSEEEEE
T ss_pred eeccCCcEeEEecC--CCcEEEEEecCCcEEEEECCCCeEEeeccccc-cccccccccCeeEEEEEEEecCCCcccceEE
Confidence 11336899999975 55699999999999999997754422211100 001111224567777651 22 357
Q ss_pred EEEECCCcEEEEECCC---CcEEEEEc---ccCCCCeEEEE-EcCCC--------------------CcEEEEEeCCCeE
Q 003822 566 LASGYSKNIALYDINS---GRRLQVFA---DMHKEHINVVK-FSNHS--------------------PSIFATSSFDQDV 618 (793)
Q Consensus 566 la~g~Dg~I~IWDl~t---g~~l~~~~---~gh~~~V~sv~-fspdg--------------------~~~LaTgs~Dg~I 618 (793)
++|.+.|.+.+|.+.- +.....+. ..+.++|..+. ++.+. +.++++++ +..+
T Consensus 159 ~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS-e~~i 237 (395)
T PF08596_consen 159 LVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS-ESDI 237 (395)
T ss_dssp EEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE--SSEE
T ss_pred EEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc-ccce
Confidence 7777889999998751 22221111 13556666655 32221 12444444 6679
Q ss_pred EEEECCCCCccceEEccCCCCeE--EEEEe-----cCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecC-CCCCcEEEEE
Q 003822 619 KLWDLRQKPIQPCYTASSSKGNV--MVCFS-----PDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITAT-GSSQNYTRSY 690 (793)
Q Consensus 619 rIWDlrt~~~~~~~~l~~~~~~v--sv~fS-----pdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~-~~~~v~s~af 690 (793)
|++..-+.+.. .+.. ..... .+.+- ..+..|++-..+|.+++|.+..-+.+........ ........++
T Consensus 238 rv~~~~~~k~~--~K~~-~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssi 314 (395)
T PF08596_consen 238 RVFKPPKSKGA--HKSF-DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSI 314 (395)
T ss_dssp EEE-TT---EE--EEE--SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE
T ss_pred EEEeCCCCccc--ceee-ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEE
Confidence 99998876432 2222 22222 24452 3577788889999999999999998888765321 1122334566
Q ss_pred eeCCC
Q 003822 691 YLNGR 695 (793)
Q Consensus 691 spdg~ 695 (793)
+++|.
T Consensus 315 s~~Gd 319 (395)
T PF08596_consen 315 SRNGD 319 (395)
T ss_dssp -TTS-
T ss_pred CCCCC
Confidence 77887
No 338
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.48 E-value=0.086 Score=58.33 Aligned_cols=285 Identities=15% Similarity=0.145 Sum_probs=130.0
Q ss_pred EEEEEeCCCCCEEEEEeC-CC--eEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCC
Q 003822 457 RQFEYHPSISCLMVFGTL-DG--EIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPP 533 (793)
Q Consensus 457 ~~vafsP~d~~~Lasgs~-DG--~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~ 533 (793)
+.=+|.+ +|+.|+.++. || .+.+.|+.+++..+.....+ .......++ ++.+.++-......|.-.|+++.+.
T Consensus 39 ~~~~ft~-dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g--~~~~g~~~s-~~~~~~~Yv~~~~~l~~vdL~T~e~ 114 (386)
T PF14583_consen 39 YQNCFTD-DGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPG--DNTFGGFLS-PDDRALYYVKNGRSLRRVDLDTLEE 114 (386)
T ss_dssp TS--B-T-TS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS---B-TTT-EE--TTSSEEEEEETTTEEEEEETTT--E
T ss_pred cCCCcCC-CCCEEEEEeccCCCcceEEEEcccCEEEECccCCC--CCccceEEe-cCCCeEEEEECCCeEEEEECCcCcE
Confidence 3345677 6666655554 54 57777888888766544221 112233334 5667766665667888889888654
Q ss_pred cccccccCCceeEecCC-CCeEEEEEc-cCCCEEEEEE----CC-------------------CcEEEEECCCCcEEEEE
Q 003822 534 SIRGMHYGAGTVTFDEF-DQLTSVHVN-SMDELFLASG----YS-------------------KNIALYDINSGRRLQVF 588 (793)
Q Consensus 534 ~~~~~~~~~~~~~~~~~-~~V~sv~~s-~~~~~lla~g----~D-------------------g~I~IWDl~tg~~l~~~ 588 (793)
.. .+... ..+-...|. ..+...+++. .| ..|.-.|+.+|+....+
T Consensus 115 ~~----------vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~ 184 (386)
T PF14583_consen 115 RV----------VYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVF 184 (386)
T ss_dssp EE----------EEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEE
T ss_pred EE----------EEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEE
Confidence 11 11111 112122221 2233333332 11 23556688888776666
Q ss_pred cccCCCCeEEEEEcCCCCcEEEEEeC---CCe-EEEEECCCC--CccceEEccCCCCeEE-EEEecCCCEEEEEeC----
Q 003822 589 ADMHKEHINVVKFSNHSPSIFATSSF---DQD-VKLWDLRQK--PIQPCYTASSSKGNVM-VCFSPDDHYLLVSAV---- 657 (793)
Q Consensus 589 ~~gh~~~V~sv~fspdg~~~LaTgs~---Dg~-IrIWDlrt~--~~~~~~~l~~~~~~vs-v~fSpdg~~Lasgs~---- 657 (793)
. -...+.-+.|+|..+.+++-|-. +.. -|||=+++. ...++..-. ....+. =-|.|||..|.--+.
T Consensus 185 ~--~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~-~~e~~gHEfw~~DG~~i~y~~~~~~~ 261 (386)
T PF14583_consen 185 E--DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRM-EGESVGHEFWVPDGSTIWYDSYTPGG 261 (386)
T ss_dssp E--ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS----TTEEEEEEEE-TTSS-EEEEEEETTT
T ss_pred e--cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCC-CCcccccccccCCCCEEEEEeecCCC
Confidence 5 45678889999998877777664 221 366765542 222222211 112222 578999988765332
Q ss_pred -CCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCCCeEEEEEeCCC----------------cEEEEEEcCCCcEEE
Q 003822 658 -DNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNGRDYIVSGSCDE----------------HVVRICCAQTGRRLR 720 (793)
Q Consensus 658 -Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg----------------~II~IWDv~tg~~l~ 720 (793)
+..|.-+|..+++....... ........++||. +++.=+.|. .+ ++++++.++...
T Consensus 262 ~~~~i~~~d~~t~~~~~~~~~-----p~~~H~~ss~Dg~-L~vGDG~d~p~~v~~~~~~~~~~~p~i-~~~~~~~~~~~~ 334 (386)
T PF14583_consen 262 QDFWIAGYDPDTGERRRLMEM-----PWCSHFMSSPDGK-LFVGDGGDAPVDVADAGGYKIENDPWI-YLFDVEAGRFRK 334 (386)
T ss_dssp --EEEEEE-TTT--EEEEEEE------SEEEEEE-TTSS-EEEEEE-------------------EE-EEEETTTTEEEE
T ss_pred CceEEEeeCCCCCCceEEEeC-----CceeeeEEcCCCC-EEEecCCCCCccccccccceecCCcEE-EEeccccCceee
Confidence 44677788888865332221 1233445567887 554433332 33 677887766542
Q ss_pred eeeecCCCCCccceeeeccCCccccCCccEEEEEEcCCCCceeeEeeEEEeCCCcEEEEc
Q 003822 721 DISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKSEIVKVNLLASTDHCDKECS 780 (793)
Q Consensus 721 ~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~~~~iv~~~ltaS~Dg~VkvW~ 780 (793)
+.-|.. .|. .+.++....| ..+.|+|++++.++ .+...|...|+-
T Consensus 335 ---l~~h~~---sw~-v~~~~~q~~h----Php~FSPDgk~VlF----~Sd~~G~~~vY~ 379 (386)
T PF14583_consen 335 ---LARHDT---SWK-VLDGDRQVTH----PHPSFSPDGKWVLF----RSDMEGPPAVYL 379 (386)
T ss_dssp ---EEE-----------BTTBSSTT--------EE-TTSSEEEE----EE-TTSS-EEEE
T ss_pred ---eeeccC---cce-eecCCCccCC----CCCccCCCCCEEEE----ECCCCCCccEEE
Confidence 333321 111 1222221122 35789999988888 776677666654
No 339
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.42 E-value=0.0079 Score=69.97 Aligned_cols=186 Identities=9% Similarity=-0.027 Sum_probs=117.3
Q ss_pred EeCCCCCEEE-EEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcC----CcEEEEEcCCCCCcc
Q 003822 461 YHPSISCLMV-FGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDN----GSLKLYDIRHMPPSI 535 (793)
Q Consensus 461 fsP~d~~~La-sgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~D----gtV~vWDl~~~~~~~ 535 (793)
+.| +++.+. +.-..+.+.+.|.++.+...++...+ ....++++ +++.++++.+.+ .++..-+.....
T Consensus 200 lpn-DGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg---npd~v~~s-pdGk~afvTsyNsE~G~tl~em~a~e~d--- 271 (635)
T PRK02888 200 LPN-DGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG---NLDNVDTD-YDGKYAFSTCYNSEEGVTLAEMMAAERD--- 271 (635)
T ss_pred cCC-CCCEeecccceeEEEEEEECccceEEEEEEeCC---CcccceEC-CCCCEEEEeccCcccCcceeeeccccCc---
Confidence 444 665443 34456778899999888888776543 33455665 688888777632 222222221111
Q ss_pred cccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCC-----CcEEEEEcccCCCCeEEEEEcCCCCcEEE
Q 003822 536 RGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINS-----GRRLQVFADMHKEHINVVKFSNHSPSIFA 610 (793)
Q Consensus 536 ~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~t-----g~~l~~~~~gh~~~V~sv~fspdg~~~La 610 (793)
..+.+... .+. .+.+++.+... .++.|.+.|..+ .+.+..+. -......+.++|||..+++
T Consensus 272 -------~~vvfni~-~ie--a~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIP--VGKsPHGV~vSPDGkylyV 337 (635)
T PRK02888 272 -------WVVVFNIA-RIE--EAVKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVP--VPKNPHGVNTSPDGKYFIA 337 (635)
T ss_pred -------eEEEEchH-HHH--HhhhCCCEEEE--CCCEEEEEECCccccCCcceEEEEE--CCCCccceEECCCCCEEEE
Confidence 01111100 000 12234554444 367899999998 35555555 5567788999999965666
Q ss_pred EEeCCCeEEEEECCCCCc----------cceEEccCCCCeEEEEEecCCCEEEEEeCCCeEEEEEcCC
Q 003822 611 TSSFDQDVKLWDLRQKPI----------QPCYTASSSKGNVMVCFSPDDHYLLVSAVDNEVRQLLAVD 668 (793)
Q Consensus 611 Tgs~Dg~IrIWDlrt~~~----------~~~~~l~~~~~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~t 668 (793)
++..+.+|.|.|+.+.+. ..+....-..++...+|.++|....+-.-|..|..|++.+
T Consensus 338 anklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 338 NGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred eCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 666799999999987531 1123334455677789999998777788899999999876
No 340
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.38 E-value=0.03 Score=63.89 Aligned_cols=218 Identities=13% Similarity=0.192 Sum_probs=107.9
Q ss_pred ceEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEE-EcCCCCC
Q 003822 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLY-DIRHMPP 533 (793)
Q Consensus 455 ~V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vW-Dl~~~~~ 533 (793)
.|+.+.++| +++.++. +.||.-.|+.......... +.-...+|. . .+.+|+-...++|.++ +++....
T Consensus 34 ~p~~ls~np-ngr~v~V-~g~geY~iyt~~~~r~k~~-------G~g~~~vw~-~-~n~yAv~~~~~~I~I~kn~~~~~~ 102 (443)
T PF04053_consen 34 YPQSLSHNP-NGRFVLV-CGDGEYEIYTALAWRNKAF-------GSGLSFVWS-S-RNRYAVLESSSTIKIYKNFKNEVV 102 (443)
T ss_dssp --SEEEE-T-TSSEEEE-EETTEEEEEETTTTEEEEE-------EE-SEEEE--T-SSEEEEE-TTS-EEEEETTEE-TT
T ss_pred CCeeEEECC-CCCEEEE-EcCCEEEEEEccCCccccc-------CceeEEEEe-c-CccEEEEECCCeEEEEEcCccccc
Confidence 388999999 8888887 4588888988554443322 234567887 3 5568888778899996 3322110
Q ss_pred cccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEe
Q 003822 534 SIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSS 613 (793)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs 613 (793)
. .+.....+..+- . |. ++....++.|.+||+.+++.+..+. .. +|..|.|+++| .+++..+
T Consensus 103 --k---------~i~~~~~~~~If--~-G~-LL~~~~~~~i~~yDw~~~~~i~~i~--v~-~vk~V~Ws~~g-~~val~t 163 (443)
T PF04053_consen 103 --K---------SIKLPFSVEKIF--G-GN-LLGVKSSDFICFYDWETGKLIRRID--VS-AVKYVIWSDDG-ELVALVT 163 (443)
T ss_dssp ----------------SS-EEEEE----SS-SEEEEETTEEEEE-TTT--EEEEES--S--E-EEEEE-TTS-SEEEEE-
T ss_pred --e---------EEcCCcccceEE--c-Cc-EEEEECCCCEEEEEhhHcceeeEEe--cC-CCcEEEEECCC-CEEEEEe
Confidence 0 011111223332 1 44 4444455589999999999999997 33 48999999998 7888777
Q ss_pred CCCeEEEEECCCC---------CccceEEccC-CCCeEEEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCC
Q 003822 614 FDQDVKLWDLRQK---------PIQPCYTASS-SKGNVMVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGSS 683 (793)
Q Consensus 614 ~Dg~IrIWDlrt~---------~~~~~~~l~~-~~~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~ 683 (793)
.+ .+.|++.... -......... ...+.+.+|..+ .++-.+.. .++. +..|.. ..+. .-..
T Consensus 164 ~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~-~~i~---~ld~ 233 (443)
T PF04053_consen 164 KD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKY--LVNGET-GIIA---HLDK 233 (443)
T ss_dssp S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEE--EETTEE-EEEE---E-SS
T ss_pred CC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCc-ceEE---EcCC
Confidence 55 6777765432 0001222222 234446777755 33333323 5654 334433 1121 1123
Q ss_pred CcEEEEEeeCCCeEEEEEeCCCcEEEEEEcC
Q 003822 684 QNYTRSYYLNGRDYIVSGSCDEHVVRICCAQ 714 (793)
Q Consensus 684 ~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~ 714 (793)
..+-+.+.+... .+.....|+.+ ..+.+.
T Consensus 234 ~~yllgy~~~~~-~ly~~Dr~~~v-~~~~ld 262 (443)
T PF04053_consen 234 PLYLLGYLPKEN-RLYLIDRDGNV-ISYELD 262 (443)
T ss_dssp --EEEEEETTTT-EEEEE-TT--E-EEEE--
T ss_pred ceEEEEEEccCC-EEEEEECCCCE-EEEEEC
Confidence 455555666444 56666666666 555543
No 341
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.34 E-value=0.081 Score=54.69 Aligned_cols=68 Identities=12% Similarity=0.121 Sum_probs=51.7
Q ss_pred CCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCccc
Q 003822 466 SCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIR 536 (793)
Q Consensus 466 ~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~~ 536 (793)
+++++.|...|.+++.+..+|.....+...+. -.+... ..+++..+..|+.|++.+..|.++.....+
T Consensus 63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~-vk~~a~--~d~~~glIycgshd~~~yalD~~~~~cVyk 130 (354)
T KOG4649|consen 63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVILET-VKVRAQ--CDFDGGLIYCGSHDGNFYALDPKTYGCVYK 130 (354)
T ss_pred CCEEEEEEccCcEEEEEecchhheeeeeehhh-hccceE--EcCCCceEEEecCCCcEEEecccccceEEe
Confidence 56799999999999999999987766654221 223332 246788999999999999999998766443
No 342
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.30 E-value=0.036 Score=60.71 Aligned_cols=217 Identities=13% Similarity=0.133 Sum_probs=125.7
Q ss_pred CeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCC------CCEEEEEEc----------CCcEEEEEcCCCC---Cccc
Q 003822 476 GEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKY------PSKLIAGSD----------NGSLKLYDIRHMP---PSIR 536 (793)
Q Consensus 476 G~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~------g~~Lasgs~----------DgtV~vWDl~~~~---~~~~ 536 (793)
+.|++.|..+.+.+..+.+.. ...+.+++...-. ..++++|.. .|.|.++++.... ..+.
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~-~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~ 80 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEP-NEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLK 80 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEET-TEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEE
T ss_pred cEEEEEeCCCCeEEEEEECCC-CceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEE
Confidence 468999998888888777644 3456665543212 357777653 2889999998841 1111
Q ss_pred ccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCc-EEEEEcccCCCCeEEEEEcCCCCcEEEEEeCC
Q 003822 537 GMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGR-RLQVFADMHKEHINVVKFSNHSPSIFATSSFD 615 (793)
Q Consensus 537 ~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~-~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~D 615 (793)
. .......++|++++-. ++. ++++.++.|.+|++...+ ....-.......+.++... + ++++.|...
T Consensus 81 ~------i~~~~~~g~V~ai~~~--~~~-lv~~~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~-~~I~vgD~~ 148 (321)
T PF03178_consen 81 L------IHSTEVKGPVTAICSF--NGR-LVVAVGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--K-NYILVGDAM 148 (321)
T ss_dssp E------EEEEEESS-EEEEEEE--TTE-EEEEETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--T-TEEEEEESS
T ss_pred E------EEEEeecCcceEhhhh--CCE-EEEeecCEEEEEEccCcccchhhheecceEEEEEEecc--c-cEEEEEEcc
Confidence 1 1122345779998864 566 444556899999999877 4433331133466666665 4 588889888
Q ss_pred CeEEEEECCC--CCccceEEccCCCCeEEEEEecCCCEEEEEeCCCeEEEEEcCC-------C--cEEEEEeeecCCCCC
Q 003822 616 QDVKLWDLRQ--KPIQPCYTASSSKGNVMVCFSPDDHYLLVSAVDNEVRQLLAVD-------G--RVHLNFGITATGSSQ 684 (793)
Q Consensus 616 g~IrIWDlrt--~~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~t-------g--~~~~~l~~~~~~~~~ 684 (793)
..+.++..+. .+...+..-......+++.|-++++.++++..+|.+.++.... + ++......+ .+..
T Consensus 149 ~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~--lg~~ 226 (321)
T PF03178_consen 149 KSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFH--LGDI 226 (321)
T ss_dssp SSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE---SS-
T ss_pred cCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEE--CCCc
Confidence 8888774443 2233333322333445688887778999999999999988752 2 232222221 2334
Q ss_pred cEEE---EEee--CCC-----eEEEEEeCCCcE
Q 003822 685 NYTR---SYYL--NGR-----DYIVSGSCDEHV 707 (793)
Q Consensus 685 v~s~---afsp--dg~-----~~L~Sgs~Dg~I 707 (793)
+..+ ...| .+. ..++-++.+|.|
T Consensus 227 v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~I 259 (321)
T PF03178_consen 227 VNSFRRGSLIPRSGSSESPNRPQILYGTVDGSI 259 (321)
T ss_dssp EEEEEE--SS--SSSS-TTEEEEEEEEETTS-E
T ss_pred cceEEEEEeeecCCCCcccccceEEEEecCCEE
Confidence 5554 3334 222 247788889988
No 343
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.29 E-value=0.018 Score=67.82 Aligned_cols=196 Identities=11% Similarity=0.128 Sum_probs=119.0
Q ss_pred EccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCC-eEEEEEcCCCCcEEEEEeCCC-----eEEEEECCCC---C-
Q 003822 558 VNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEH-INVVKFSNHSPSIFATSSFDQ-----DVKLWDLRQK---P- 627 (793)
Q Consensus 558 ~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~-V~sv~fspdg~~~LaTgs~Dg-----~IrIWDlrt~---~- 627 (793)
+++.++.++.|+.+|.|.+++-. -+.++.|+ ++... |..+ |.-++.++|++-+.|+ .++|||+... .
T Consensus 31 ~~s~~~~vvigt~~G~V~~Ln~s-~~~~~~fq-a~~~siv~~L-~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s 107 (933)
T KOG2114|consen 31 CSSSTGSVVIGTADGRVVILNSS-FQLIRGFQ-AYEQSIVQFL-YILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS 107 (933)
T ss_pred EcCCCceEEEeeccccEEEeccc-ceeeehhe-ecchhhhhHh-hcccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence 34778888888899999888644 44446666 46666 4444 3334446888877765 4999999753 1
Q ss_pred ccce-----EEc--cCCCCeE-EEEEecCCCEEEEEeCCCeEEEEEcC--CCcEEEEEeeecCCCCCcEEEEEeeCCCeE
Q 003822 628 IQPC-----YTA--SSSKGNV-MVCFSPDDHYLLVSAVDNEVRQLLAV--DGRVHLNFGITATGSSQNYTRSYYLNGRDY 697 (793)
Q Consensus 628 ~~~~-----~~l--~~~~~~v-sv~fSpdg~~Lasgs~Dg~I~IwDl~--tg~~~~~l~~~~~~~~~v~s~afspdg~~~ 697 (793)
+..+ ++. +....++ +++.+.+-+.+|+|-.+|.|..+.-. ..+- ........+...++.+++..++...
T Consensus 108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrg-sr~~~~~~~~~pITgL~~~~d~~s~ 186 (933)
T KOG2114|consen 108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRG-SRQDYSHRGKEPITGLALRSDGKSV 186 (933)
T ss_pred cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccc-cceeeeccCCCCceeeEEecCCcee
Confidence 2222 111 1122333 48999999999999999999888421 1111 1233344677889999999999843
Q ss_pred EEEEeCCCcEEEEEEcCCCcEEEeeeecCCCCCccceeeeccCCccccCCccEEEEEEcCCCCceeeEeeEEEeCCCcEE
Q 003822 698 IVSGSCDEHVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKSEIVKVNLLASTDHCDK 777 (793)
Q Consensus 698 L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~~~~iv~~~ltaS~Dg~Vk 777 (793)
+.++ ....| .+|.+. |+.....++..|+ .++++.++++... . ++++.+..+.
T Consensus 187 lFv~-Tt~~V-~~y~l~-gr~p~~~~ld~~G-------------------~~lnCss~~~~t~-q-----fIca~~e~l~ 238 (933)
T KOG2114|consen 187 LFVA-TTEQV-MLYSLS-GRTPSLKVLDNNG-------------------ISLNCSSFSDGTY-Q-----FICAGSEFLY 238 (933)
T ss_pred EEEE-eccee-EEEEec-CCCcceeeeccCC-------------------ccceeeecCCCCc-c-----EEEecCceEE
Confidence 3333 33467 888876 4442111233333 2577777777432 2 2344444556
Q ss_pred EEcCCCCC
Q 003822 778 ECSHGQHS 785 (793)
Q Consensus 778 vW~~~~~~ 785 (793)
+++.+...
T Consensus 239 fY~sd~~~ 246 (933)
T KOG2114|consen 239 FYDSDGRG 246 (933)
T ss_pred EEcCCCcc
Confidence 66665544
No 344
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.22 E-value=0.022 Score=64.72 Aligned_cols=159 Identities=16% Similarity=0.205 Sum_probs=99.8
Q ss_pred CeEEEEEccCCCEEEEEE---CC-CcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeCCCe--EEEEECCC
Q 003822 552 QLTSVHVNSMDELFLASG---YS-KNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQD--VKLWDLRQ 625 (793)
Q Consensus 552 ~V~sv~~s~~~~~lla~g---~D-g~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~Dg~--IrIWDlrt 625 (793)
.+..-+|++++..++... .. ..+.++|+.+++...... ..+.-..-+|+|+|.+++++...||. |.++|+.+
T Consensus 194 ~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~--~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~ 271 (425)
T COG0823 194 LILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN--FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDG 271 (425)
T ss_pred ceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec--cCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCC
Confidence 345556777777666554 22 469999999987666554 33444457899999777777778877 66678777
Q ss_pred CCccceEEccCCCCeE-EEEEecCCCEEEEEeC-CC--eEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCCCeEEEEE
Q 003822 626 KPIQPCYTASSSKGNV-MVCFSPDDHYLLVSAV-DN--EVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNGRDYIVSG 701 (793)
Q Consensus 626 ~~~~~~~~l~~~~~~v-sv~fSpdg~~Lasgs~-Dg--~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sg 701 (793)
+.... +....++. .-.|+|||++|+-.+. .| .|.+++...+.. ..+.. ... .-..-.|+|||..+++..
T Consensus 272 ~~~~~---Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~--~~~-~~~~p~~SpdG~~i~~~~ 344 (425)
T COG0823 272 KNLPR---LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTF--SGG-GNSNPVWSPDGDKIVFES 344 (425)
T ss_pred Cccee---cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeec--cCC-CCcCccCCCCCCEEEEEe
Confidence 65322 22222222 4789999999887764 34 456666665544 33332 122 222678999999444444
Q ss_pred eCCCc--EEEEEEcCCCcEEE
Q 003822 702 SCDEH--VVRICCAQTGRRLR 720 (793)
Q Consensus 702 s~Dg~--II~IWDv~tg~~l~ 720 (793)
..+|. | .+.|..++..++
T Consensus 345 ~~~g~~~i-~~~~~~~~~~~~ 364 (425)
T COG0823 345 SSGGQWDI-DKNDLASGGKIR 364 (425)
T ss_pred ccCCceee-EEeccCCCCcEE
Confidence 33454 5 777777776554
No 345
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.22 E-value=0.3 Score=55.49 Aligned_cols=200 Identities=10% Similarity=0.124 Sum_probs=106.3
Q ss_pred eEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcccccccCCceeEec-CCCCeEE
Q 003822 477 EIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFD-EFDQLTS 555 (793)
Q Consensus 477 ~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~~~~~~~~~~~~~~-~~~~V~s 555 (793)
.|.||+.. |+.+..+.... +.|.++.|. +...|+....||+++++|+.... ... .. ....... ....+..
T Consensus 62 ~I~iys~s-G~ll~~i~w~~--~~iv~~~wt--~~e~LvvV~~dG~v~vy~~~G~~-~fs-l~--~~i~~~~v~e~~i~~ 132 (410)
T PF04841_consen 62 SIQIYSSS-GKLLSSIPWDS--GRIVGMGWT--DDEELVVVQSDGTVRVYDLFGEF-QFS-LG--EEIEEEKVLECRIFA 132 (410)
T ss_pred EEEEECCC-CCEeEEEEECC--CCEEEEEEC--CCCeEEEEEcCCEEEEEeCCCce-eec-hh--hhccccCcccccccc
Confidence 49999865 77777777644 799999996 45677777899999999986433 000 00 0000000 0011111
Q ss_pred EEEccCCCEEEEEECCCcEEEEECCCCc-EEEEE---cc----cCCC-CeE-EEEEcCCCCcEEEEEeCCCeEEEEECCC
Q 003822 556 VHVNSMDELFLASGYSKNIALYDINSGR-RLQVF---AD----MHKE-HIN-VVKFSNHSPSIFATSSFDQDVKLWDLRQ 625 (793)
Q Consensus 556 v~~s~~~~~lla~g~Dg~I~IWDl~tg~-~l~~~---~~----gh~~-~V~-sv~fspdg~~~LaTgs~Dg~IrIWDlrt 625 (793)
..+ ..++.++. ..++.+.+..-.... ..+.+ .. .|.. ... ...++.+. ...+....++.+.+.+-..
T Consensus 133 ~~~-~~~GivvL-t~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~-~~~i~~~~g~~i~~i~~~~ 209 (410)
T PF04841_consen 133 IWF-YKNGIVVL-TGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDR-VVEILLANGETIYIIDENS 209 (410)
T ss_pred ccc-CCCCEEEE-CCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCc-ceEEEEecCCEEEEEEccc
Confidence 122 22333333 334444433222211 11111 10 0000 111 12344444 4445555556666444332
Q ss_pred CCccceEEccCCCCeEEEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCCC
Q 003822 626 KPIQPCYTASSSKGNVMVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNGR 695 (793)
Q Consensus 626 ~~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg~ 695 (793)
. .+ +.....+..++.||+|+++|.-..+|.+.+....-.+....+... .......+.|..++.
T Consensus 210 ~--~~---i~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~--~~~~p~~~~WCG~da 272 (410)
T PF04841_consen 210 F--KQ---IDSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTD--SKSPPKQMAWCGNDA 272 (410)
T ss_pred c--cc---ccCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecC--cCCCCcEEEEECCCc
Confidence 1 11 223345667999999999999999999999887666666666532 233455666666553
No 346
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.21 E-value=0.12 Score=58.28 Aligned_cols=221 Identities=10% Similarity=0.069 Sum_probs=147.0
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEc---CCcEEEEEcCCCC
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSD---NGSLKLYDIRHMP 532 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~---DgtV~vWDl~~~~ 532 (793)
+..++.++...+..++...++.|.+.|..+......... +. ....+++. ++++.+.++.. ++++.+.|..+..
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~v-G~--~P~~~~~~-~~~~~vYV~n~~~~~~~vsvid~~t~~ 151 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPV-GL--GPVGLAVD-PDGKYVYVANAGNGNNTVSVIDAATNK 151 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeee-cc--CCceEEEC-CCCCEEEEEecccCCceEEEEeCCCCe
Confidence 677889985555777777789999999888777776654 32 55677776 66766666554 6788888877765
Q ss_pred CcccccccCCceeEecCCCCeEEEEEccCCCEEEEEE-CCCcEEEEECCCCcEEE-E----EcccCCCCeEEEEEcCCCC
Q 003822 533 PSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASG-YSKNIALYDINSGRRLQ-V----FADMHKEHINVVKFSNHSP 606 (793)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g-~Dg~I~IWDl~tg~~l~-~----~~~gh~~~V~sv~fspdg~ 606 (793)
..... +....+ ..+++.|.+..++++. .++.|.+.|.......+ . .. -......+.+.|+|.
T Consensus 152 ~~~~~---------~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~--~~~~P~~i~v~~~g~ 219 (381)
T COG3391 152 VTATI---------PVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVG--VGTGPAGIAVDPDGN 219 (381)
T ss_pred EEEEE---------ecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccc--cCCCCceEEECCCCC
Confidence 43221 111123 7889989999777776 68999999977655543 1 11 223446789999995
Q ss_pred cEEEEEeCC--CeEEEEECCCCCccceEEccCCC-CeEEEEEecCCCEEEEEeC-CCeEEEEEcCCCcEEEEEeeecCCC
Q 003822 607 SIFATSSFD--QDVKLWDLRQKPIQPCYTASSSK-GNVMVCFSPDDHYLLVSAV-DNEVRQLLAVDGRVHLNFGITATGS 682 (793)
Q Consensus 607 ~~LaTgs~D--g~IrIWDlrt~~~~~~~~l~~~~-~~vsv~fSpdg~~Lasgs~-Dg~I~IwDl~tg~~~~~l~~~~~~~ 682 (793)
...++...+ +.+...|..++..... ...... ....+..+|+|.++.+... .+.+.+.|..+.+............
T Consensus 220 ~~yV~~~~~~~~~v~~id~~~~~v~~~-~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~ 298 (381)
T COG3391 220 RVYVANDGSGSNNVLKIDTATGNVTAT-DLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEAL 298 (381)
T ss_pred EEEEEeccCCCceEEEEeCCCceEEEe-ccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeeccccccc
Confidence 455555444 6899999888643322 112222 3456899999999998854 4899999999888776665333333
Q ss_pred CCcEEEEEeeC
Q 003822 683 SQNYTRSYYLN 693 (793)
Q Consensus 683 ~~v~s~afspd 693 (793)
..+...++.+.
T Consensus 299 ~~~~~~~~~~~ 309 (381)
T COG3391 299 GEPVSIAISPL 309 (381)
T ss_pred ccceeccceee
Confidence 34555555544
No 347
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.19 E-value=0.11 Score=57.84 Aligned_cols=240 Identities=13% Similarity=0.155 Sum_probs=126.8
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCC----------------CCCEEEEEEeeCCCCEEEEEEc
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGA----------------MNSVLGLCWLKKYPSKLIAGSD 519 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h----------------~~~V~sv~fs~~~g~~Lasgs~ 519 (793)
+....|+| +++.+|... ++.|.+++..+++.. .+...|- -+.-.++-|+ |++++|+....
T Consensus 45 ~~~~~~sP-~g~~~~~v~-~~nly~~~~~~~~~~-~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WS-pd~~~la~~~~ 120 (353)
T PF00930_consen 45 LQDAKWSP-DGKYIAFVR-DNNLYLRDLATGQET-QLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWS-PDSKYLAFLRF 120 (353)
T ss_dssp BSEEEE-S-SSTEEEEEE-TTEEEEESSTTSEEE-ESES--TTTEEESB--HHHHHHTSSSSBSEEE--TTSSEEEEEEE
T ss_pred cccceeec-CCCeeEEEe-cCceEEEECCCCCeE-EeccccceeEEcCccceeccccccccccceEEC-CCCCEEEEEEE
Confidence 56788999 899998886 678999998877443 3332220 1122456787 78888877653
Q ss_pred -CCcEEEEEcC---CCC---Ccccccc-------------------cCC-ceeEe-----cCCCCeEEEEEccCCCEEEE
Q 003822 520 -NGSLKLYDIR---HMP---PSIRGMH-------------------YGA-GTVTF-----DEFDQLTSVHVNSMDELFLA 567 (793)
Q Consensus 520 -DgtV~vWDl~---~~~---~~~~~~~-------------------~~~-~~~~~-----~~~~~V~sv~~s~~~~~lla 567 (793)
+..|+.+.+- ... ....... ... ..+.. .....+..+.|.+++..+++
T Consensus 121 d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~ 200 (353)
T PF00930_consen 121 DEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWV 200 (353)
T ss_dssp E-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEE
T ss_pred CCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEE
Confidence 3444444332 111 0010000 000 00000 11234778888777774554
Q ss_pred EE--CC---CcEEEEECCCCcEEEEEcccCCCCe---EEEEEc-CCCCcEEEEEeCCCeEE--EEECCCCCccceEEccC
Q 003822 568 SG--YS---KNIALYDINSGRRLQVFADMHKEHI---NVVKFS-NHSPSIFATSSFDQDVK--LWDLRQKPIQPCYTASS 636 (793)
Q Consensus 568 ~g--~D---g~I~IWDl~tg~~l~~~~~gh~~~V---~sv~fs-pdg~~~LaTgs~Dg~Ir--IWDlrt~~~~~~~~l~~ 636 (793)
.- .+ ..+.++|..++...........+.| ....|. +++..++.....||.-+ +++...+ .......+
T Consensus 201 ~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~--~~~~lT~G 278 (353)
T PF00930_consen 201 QWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGG--KPRQLTSG 278 (353)
T ss_dssp EEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSS--EEEESS-S
T ss_pred EEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEccccc--ceeccccC
Confidence 43 22 3467778887765444432233333 255554 77767777777888744 4555554 33333334
Q ss_pred CCCeEE-EEEecCCCEEE-EEeCC----CeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCCCeEEEEEeCC
Q 003822 637 SKGNVM-VCFSPDDHYLL-VSAVD----NEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNGRDYIVSGSCD 704 (793)
Q Consensus 637 ~~~~vs-v~fSpdg~~La-sgs~D----g~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~D 704 (793)
.-.+.. +.|+++++.|+ ++..+ ..++..++..+..+..+.. .........|+|+|+.++.+.+.-
T Consensus 279 ~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~---~~~~~~~~~~Spdg~y~v~~~s~~ 349 (353)
T PF00930_consen 279 DWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTC---EDGDHYSASFSPDGKYYVDTYSGP 349 (353)
T ss_dssp SS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESST---TSSTTEEEEE-TTSSEEEEEEESS
T ss_pred ceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccC---CCCCceEEEECCCCCEEEEEEcCC
Confidence 434434 88999887665 44432 2566666662333344431 112226899999999666665543
No 348
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.18 E-value=0.58 Score=53.03 Aligned_cols=246 Identities=13% Similarity=0.088 Sum_probs=132.9
Q ss_pred eEEEEEeCCCCCEEEEE-eCCC----eEEEEECCCCeEEEEE-eccCCCCCEEEEEEeeCCCCEEEEEEcCC--------
Q 003822 456 PRQFEYHPSISCLMVFG-TLDG----EIVVVNHENENIVSYI-PSFGAMNSVLGLCWLKKYPSKLIAGSDNG-------- 521 (793)
Q Consensus 456 V~~vafsP~d~~~Lasg-s~DG----~I~VWd~~t~~~i~~l-~~~~h~~~V~sv~fs~~~g~~Lasgs~Dg-------- 521 (793)
+..++++| +++++|.+ +..| +++++|+++|+.+... . . . ....+.|. ++++.|+....+.
T Consensus 126 ~~~~~~Sp-dg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~--~-~-~~~~~~W~-~d~~~~~y~~~~~~~~~~~~~ 199 (414)
T PF02897_consen 126 LGGFSVSP-DGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIE--N-P-KFSSVSWS-DDGKGFFYTRFDEDQRTSDSG 199 (414)
T ss_dssp EEEEEETT-TSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEE--E-E-ESEEEEEC-TTSSEEEEEECSTTTSS-CCG
T ss_pred eeeeeECC-CCCEEEEEecCCCCceEEEEEEECCCCcCcCCccc--c-c-ccceEEEe-CCCCEEEEEEeCcccccccCC
Confidence 55788999 88888865 3334 4999999999876532 2 1 1 12238998 6767666554333
Q ss_pred ---cEEEEEcCCCCCcccccccCCceeEecCC--CC-eEEEEEccCCCEEEEEEC---C-CcEEEEECCCC----cEEEE
Q 003822 522 ---SLKLYDIRHMPPSIRGMHYGAGTVTFDEF--DQ-LTSVHVNSMDELFLASGY---S-KNIALYDINSG----RRLQV 587 (793)
Q Consensus 522 ---tV~vWDl~~~~~~~~~~~~~~~~~~~~~~--~~-V~sv~~s~~~~~lla~g~---D-g~I~IWDl~tg----~~l~~ 587 (793)
.|..|.+.+.... ....+... .. ...+..++++.+++.... + ..+.+.|+..+ .....
T Consensus 200 ~~~~v~~~~~gt~~~~--------d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~ 271 (414)
T PF02897_consen 200 YPRQVYRHKLGTPQSE--------DELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKL 271 (414)
T ss_dssp CCEEEEEEETTS-GGG---------EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEE
T ss_pred CCcEEEEEECCCChHh--------CeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEE
Confidence 3777777765431 11233222 22 457788888888776542 3 46888899875 23333
Q ss_pred EcccCCCCeEEEEEcCCCCcEEEEEeC---CCeEEEEECCCCCccc-e-EEccCCCCeEEEEEecCCCEEEEEeC-CC--
Q 003822 588 FADMHKEHINVVKFSNHSPSIFATSSF---DQDVKLWDLRQKPIQP-C-YTASSSKGNVMVCFSPDDHYLLVSAV-DN-- 659 (793)
Q Consensus 588 ~~~gh~~~V~sv~fspdg~~~LaTgs~---Dg~IrIWDlrt~~~~~-~-~~l~~~~~~vsv~fSpdg~~Lasgs~-Dg-- 659 (793)
+.....+....+... .+ .+++.... .+.|.-.++....... . ..++......-..+...+.+|+.... ++
T Consensus 272 l~~~~~~~~~~v~~~-~~-~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~ 349 (414)
T PF02897_consen 272 LSPREDGVEYYVDHH-GD-RLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSS 349 (414)
T ss_dssp EEESSSS-EEEEEEE-TT-EEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEE
T ss_pred EeCCCCceEEEEEcc-CC-EEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCcc
Confidence 331233333444444 33 45544433 4567777887764311 1 22222233333445555666666543 33
Q ss_pred eEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCCCeEEEEEeCC---CcEEEEEEcCCCcEEE
Q 003822 660 EVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNGRDYIVSGSCD---EHVVRICCAQTGRRLR 720 (793)
Q Consensus 660 ~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~D---g~II~IWDv~tg~~l~ 720 (793)
.|+++++..+.....+.. .....+......+++..+.++.++- +++ +-||+.+++...
T Consensus 350 ~l~v~~~~~~~~~~~~~~--p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~-y~~d~~t~~~~~ 410 (414)
T PF02897_consen 350 RLRVYDLDDGKESREIPL--PEAGSVSGVSGDFDSDELRFSYSSFTTPPTV-YRYDLATGELTL 410 (414)
T ss_dssp EEEEEETT-TEEEEEEES--SSSSEEEEEES-TT-SEEEEEEEETTEEEEE-EEEETTTTCEEE
T ss_pred EEEEEECCCCcEEeeecC--CcceEEeccCCCCCCCEEEEEEeCCCCCCEE-EEEECCCCCEEE
Confidence 688999884555454443 2233344444445555455554432 466 888999887653
No 349
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.17 E-value=0.091 Score=61.01 Aligned_cols=198 Identities=13% Similarity=0.152 Sum_probs=115.5
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcccccccCCce
Q 003822 465 ISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGT 544 (793)
Q Consensus 465 d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~~~~~~~~~~ 544 (793)
.+++++.|+.-|.+++|+-..++... ++..+..+.+..+..+ .+..++|.|+..|.|.++-+............ .
T Consensus 44 t~~~l~~GsS~G~lyl~~R~~~~~~~-~~~~~~~~~~~~~~vs-~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t---~ 118 (726)
T KOG3621|consen 44 TEEYLAMGSSAGSVYLYNRHTGEMRK-LKNEGATGITCVRSVS-SVEYLVAAGTASGRVSVFQLNKELPRDLDYVT---P 118 (726)
T ss_pred CCceEEEecccceEEEEecCchhhhc-ccccCccceEEEEEec-chhHhhhhhcCCceEEeehhhccCCCcceeec---c
Confidence 56899999999999999987665433 3322333334444444 67778888999999999988874432111111 1
Q ss_pred eEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCC----cEEEEEcccCCCCeEEEEEcCCCCcEEEEEeCCCeEEE
Q 003822 545 VTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSG----RRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKL 620 (793)
Q Consensus 545 ~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg----~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~Dg~IrI 620 (793)
....|...|++++|++++..+++|...|+|.+-.+.+. ...+.+. ...+.|-.+.+.. + .+|++... ...+
T Consensus 119 ~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il-~~ds~IVQlD~~q-~-~LLVStl~--r~~L 193 (726)
T KOG3621|consen 119 CDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEIL-SEDSEIVQLDYLQ-S-YLLVSTLT--RCIL 193 (726)
T ss_pred ccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceee-ccCcceEEeeccc-c-eehHhhhh--hhhe
Confidence 11225678999999999999999988999999888762 1112222 1446676776653 3 34443332 2345
Q ss_pred EECCCCCccceEEccCCCC--eEEEEEecC-----CCEEEEEeCCCeEEEEEcC-CCcEEEEE
Q 003822 621 WDLRQKPIQPCYTASSSKG--NVMVCFSPD-----DHYLLVSAVDNEVRQLLAV-DGRVHLNF 675 (793)
Q Consensus 621 WDlrt~~~~~~~~l~~~~~--~vsv~fSpd-----g~~Lasgs~Dg~I~IwDl~-tg~~~~~l 675 (793)
+++..+...++-+-+ ..+ ....+|-|. ...|+++-- | .|+|.+. .|..+.+.
T Consensus 194 c~tE~eti~QIG~k~-R~~~~~~GACF~~g~~~~q~~~IycaRP-G-~RlWead~~G~V~~Th 253 (726)
T KOG3621|consen 194 CQTEAETITQIGKKP-RKSLIDFGACFFPGQCKAQKPQIYCARP-G-LRLWEADFAGEVIKTH 253 (726)
T ss_pred eecchhHHHHhcCCC-cCCccccceEEeeccccCCCceEEEecC-C-CceEEeecceeEEEee
Confidence 666554333332211 112 223556553 234444433 3 4677654 24444443
No 350
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.08 E-value=0.11 Score=54.66 Aligned_cols=204 Identities=11% Similarity=0.160 Sum_probs=106.3
Q ss_pred eccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEE-CC
Q 003822 493 PSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASG-YS 571 (793)
Q Consensus 493 ~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g-~D 571 (793)
...+-...+.+++|.|.++.++++....+.|...+.+ ++. ++ .+.+...+..-+|++.. ++.++.+. .+
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~v-lr-------~i~l~g~~D~EgI~y~g-~~~~vl~~Er~ 85 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKV-LR-------RIPLDGFGDYEGITYLG-NGRYVLSEERD 85 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---E-EE-------EEE-SS-SSEEEEEE-S-TTEEEEEETTT
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCE-EE-------EEeCCCCCCceeEEEEC-CCEEEEEEcCC
Confidence 3445566799999985455677777788888777764 332 22 22344446678888854 44555555 58
Q ss_pred CcEEEEECCCCc------EEEEEc----ccCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEECCC---CCccceEEc---c
Q 003822 572 KNIALYDINSGR------RLQVFA----DMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQ---KPIQPCYTA---S 635 (793)
Q Consensus 572 g~I~IWDl~tg~------~l~~~~----~gh~~~V~sv~fspdg~~~LaTgs~Dg~IrIWDlrt---~~~~~~~~l---~ 635 (793)
+.+.++++.... ....+. ..+...+-.++|+|.+ +.|+.+-...-.++|.++. ......... .
T Consensus 86 ~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~-~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~ 164 (248)
T PF06977_consen 86 QRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKT-NRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLD 164 (248)
T ss_dssp TEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTT-TEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH
T ss_pred CcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCC-CEEEEEeCCCChhhEEEccccCccceeeccccccc
Confidence 999999884321 112222 1245668999999988 4444555555566666654 111111111 1
Q ss_pred ----CCCCeEEEEEecCC-CEEEEEeCCCeEEEEEcCCCcEEEEEeeecCC------CCCcEEEEEeeCCCeEEEEEeCC
Q 003822 636 ----SSKGNVMVCFSPDD-HYLLVSAVDNEVRQLLAVDGRVHLNFGITATG------SSQNYTRSYYLNGRDYIVSGSCD 704 (793)
Q Consensus 636 ----~~~~~vsv~fSpdg-~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~------~~~v~s~afspdg~~~L~Sgs~D 704 (793)
.....-.+.++|.. .+++....+..|.++| .+|+.+..+...... -.+.-.++|.++|. |...|.-
T Consensus 165 ~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~--LYIvsEp 241 (248)
T PF06977_consen 165 DDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGN--LYIVSEP 241 (248)
T ss_dssp -HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT----EEEEETT
T ss_pred cccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCC--EEEEcCC
Confidence 11122348999965 4555555677888899 788887777654422 13567899999997 3334454
Q ss_pred CcEEEEE
Q 003822 705 EHVVRIC 711 (793)
Q Consensus 705 g~II~IW 711 (793)
+.. +++
T Consensus 242 Nlf-y~f 247 (248)
T PF06977_consen 242 NLF-YRF 247 (248)
T ss_dssp TEE-EEE
T ss_pred ceE-EEe
Confidence 433 443
No 351
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.07 E-value=0.039 Score=67.39 Aligned_cols=205 Identities=14% Similarity=0.048 Sum_probs=124.2
Q ss_pred CCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEECC----CC
Q 003822 551 DQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLR----QK 626 (793)
Q Consensus 551 ~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~Dg~IrIWDlr----t~ 626 (793)
+.|.++.|......++.+..+|.|.+-|..+......= .-...|.+++|+|++ .+++..+.++++.+-+-. ..
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg--~vd~GI~aaswS~De-e~l~liT~~~tll~mT~~f~~i~E 145 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIVG--NVDNGISAASWSPDE-ELLALITGRQTLLFMTKDFEPIAE 145 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccceeeee--eccCceEEEeecCCC-cEEEEEeCCcEEEEEeccccchhc
Confidence 46888888888889999999999999988876543222 245789999999999 788888887777654321 00
Q ss_pred Ccc---------c--------eEEcc----------------------CCCCeEEEEEecCCCEEEEEe-----CCCeEE
Q 003822 627 PIQ---------P--------CYTAS----------------------SSKGNVMVCFSPDDHYLLVSA-----VDNEVR 662 (793)
Q Consensus 627 ~~~---------~--------~~~l~----------------------~~~~~vsv~fSpdg~~Lasgs-----~Dg~I~ 662 (793)
+.. . ...+. -+..-+++.|--||+++|+.. ....|+
T Consensus 146 ~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rkir 225 (1265)
T KOG1920|consen 146 KPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIR 225 (1265)
T ss_pred cccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEE
Confidence 000 0 00111 122234589999999999843 337899
Q ss_pred EEEcCCCcEEEEEeeecCCCCCcEEEEEeeCCCeEEEEEe---CCCcEEEEEEcCCCcEEEeeeecCCCCCccceeeecc
Q 003822 663 QLLAVDGRVHLNFGITATGSSQNYTRSYYLNGRDYIVSGS---CDEHVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLR 739 (793)
Q Consensus 663 IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs---~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~ 739 (793)
|||.. |.+-..-. .....-..++|-|.|. .+++-. +|+.| .++.- .|-. +..|+...+
T Consensus 226 V~drE-g~Lns~se---~~~~l~~~LsWkPsgs-~iA~iq~~~sd~~I-vffEr-NGL~------------hg~f~l~~p 286 (1265)
T KOG1920|consen 226 VYDRE-GALNSTSE---PVEGLQHSLSWKPSGS-LIAAIQCKTSDSDI-VFFER-NGLR------------HGEFVLPFP 286 (1265)
T ss_pred Eeccc-chhhcccC---cccccccceeecCCCC-eEeeeeecCCCCcE-EEEec-CCcc------------ccccccCCc
Confidence 99976 54422111 1223345789999888 777643 34466 66643 2221 122333222
Q ss_pred CCccccCCccEEEEEEcCCCCceeeEeeEEEeCCCcEEEEcCCCC
Q 003822 740 GDPFRDFNMSILAAYTRPSSKSEIVKVNLLASTDHCDKECSHGQH 784 (793)
Q Consensus 740 g~~~~~h~~~V~sva~~P~~~~~iv~~~ltaS~Dg~VkvW~~~~~ 784 (793)
.-...|..++|+.++ ..++ ..........|++|..+..
T Consensus 287 -----~de~~ve~L~Wns~s-diLA-v~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 287 -----LDEKEVEELAWNSNS-DILA-VVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred -----ccccchheeeecCCC-Ccee-eeecccccceEEEEEecCe
Confidence 112348899999863 2222 1112334455999987643
No 352
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=96.99 E-value=0.33 Score=53.93 Aligned_cols=219 Identities=15% Similarity=0.164 Sum_probs=116.4
Q ss_pred CCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcccccccCCceeEecC-----
Q 003822 475 DGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDE----- 549 (793)
Q Consensus 475 DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~~~~~~~~~~~~~~~----- 549 (793)
.+.+.|||+++++...... ....+....|+ |+|+.++... ++.|.+++..++........+ ...+....
T Consensus 22 ~~~y~i~d~~~~~~~~l~~---~~~~~~~~~~s-P~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg-~~~i~nG~~dwvy 95 (353)
T PF00930_consen 22 KGDYYIYDIETGEITPLTP---PPPKLQDAKWS-PDGKYIAFVR-DNNLYLRDLATGQETQLTTDG-EPGIYNGVPDWVY 95 (353)
T ss_dssp EEEEEEEETTTTEEEESS----EETTBSEEEE--SSSTEEEEEE-TTEEEEESSTTSEEEESES---TTTEEESB--HHH
T ss_pred ceeEEEEecCCCceEECcC---Cccccccceee-cCCCeeEEEe-cCceEEEECCCCCeEEecccc-ceeEEcCccceec
Confidence 4679999999977654332 24678889998 7899888875 578999988766432222222 11111100
Q ss_pred ----CCCeEEEEEccCCCEEEEEEC-CCcEEE-----------------------------------EECCCCcEEE-EE
Q 003822 550 ----FDQLTSVHVNSMDELFLASGY-SKNIAL-----------------------------------YDINSGRRLQ-VF 588 (793)
Q Consensus 550 ----~~~V~sv~~s~~~~~lla~g~-Dg~I~I-----------------------------------WDl~tg~~l~-~~ 588 (793)
.+.-..+-|+|++.+++.... +..|.. +|+.+++... ..
T Consensus 96 eEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~ 175 (353)
T PF00930_consen 96 EEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDP 175 (353)
T ss_dssp HHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE--
T ss_pred cccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeee
Confidence 223456778888887776653 333333 3333332211 00
Q ss_pred c---ccCCCCeEEEEEcCCCCcEEE-EEeCCC---eEEEEECCCCCccceEEccCCCCeE----EEEEe-cCCC-EEEEE
Q 003822 589 A---DMHKEHINVVKFSNHSPSIFA-TSSFDQ---DVKLWDLRQKPIQPCYTASSSKGNV----MVCFS-PDDH-YLLVS 655 (793)
Q Consensus 589 ~---~gh~~~V~sv~fspdg~~~La-Tgs~Dg---~IrIWDlrt~~~~~~~~l~~~~~~v----sv~fS-pdg~-~Lasg 655 (793)
. ..-...+..+.|.+++..+++ ..+.+. .+.+.|..++....+..... .+.+ ...|. +++. ++...
T Consensus 176 ~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~-~~Wv~~~~~~~~~~~~~~~~l~~s 254 (353)
T PF00930_consen 176 PNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETS-DGWVDVYDPPHFLGPDGNEFLWIS 254 (353)
T ss_dssp -HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEES-SSSSSSSSEEEE-TTTSSEEEEEE
T ss_pred ccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecC-CcceeeecccccccCCCCEEEEEE
Confidence 0 012345678899999831333 334433 27777888776554443222 2222 35554 5554 44555
Q ss_pred eCCCe--EEEEEcCCCcEEEEEeeecCCCCCcE-EEEEeeCCCeEEEEEeCC
Q 003822 656 AVDNE--VRQLLAVDGRVHLNFGITATGSSQNY-TRSYYLNGRDYIVSGSCD 704 (793)
Q Consensus 656 s~Dg~--I~IwDl~tg~~~~~l~~~~~~~~~v~-s~afspdg~~~L~Sgs~D 704 (793)
..+|. |.+++...+.. ..+. .+.-.|. .+.+.++++.+..++..+
T Consensus 255 ~~~G~~hly~~~~~~~~~-~~lT---~G~~~V~~i~~~d~~~~~iyf~a~~~ 302 (353)
T PF00930_consen 255 ERDGYRHLYLYDLDGGKP-RQLT---SGDWEVTSILGWDEDNNRIYFTANGD 302 (353)
T ss_dssp ETTSSEEEEEEETTSSEE-EESS----SSS-EEEEEEEECTSSEEEEEESSG
T ss_pred EcCCCcEEEEEcccccce-eccc---cCceeecccceEcCCCCEEEEEecCC
Confidence 56664 55556655553 2221 3444453 467788887666677663
No 353
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=96.94 E-value=0.35 Score=52.95 Aligned_cols=134 Identities=10% Similarity=0.095 Sum_probs=85.6
Q ss_pred CcEEEEECCCC-----cEEEEEcccCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEECCCCC-ccceEEccCCCCeEEEEE
Q 003822 572 KNIALYDINSG-----RRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKP-IQPCYTASSSKGNVMVCF 645 (793)
Q Consensus 572 g~I~IWDl~tg-----~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~Dg~IrIWDlrt~~-~~~~~~l~~~~~~vsv~f 645 (793)
|.|.++++... +..........++|++++-- .+ . ++.+. .+.|.+|++...+ ..+.........++++..
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~-~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~ 137 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NG-R-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSV 137 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TT-E-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEE
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CC-E-EEEee-cCEEEEEEccCcccchhhheecceEEEEEEec
Confidence 88999999984 22222222367899998876 34 4 44444 4789999998876 555555444444444444
Q ss_pred ecCCCEEEEEeCCCeEEEEEcCC-CcEEEEEeeecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcC
Q 003822 646 SPDDHYLLVSAVDNEVRQLLAVD-GRVHLNFGITATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQ 714 (793)
Q Consensus 646 Spdg~~Lasgs~Dg~I~IwDl~t-g~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~ 714 (793)
. +.+|++|.....+.++.... ++.+..+.. ......+.++.+-+++. .++.+..+|.+ .++...
T Consensus 138 ~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~-d~~~~~v~~~~~l~d~~-~~i~~D~~gnl-~~l~~~ 202 (321)
T PF03178_consen 138 F--KNYILVGDAMKSVSLLRYDEENNKLILVAR-DYQPRWVTAAEFLVDED-TIIVGDKDGNL-FVLRYN 202 (321)
T ss_dssp E--TTEEEEEESSSSEEEEEEETTTE-EEEEEE-ESS-BEEEEEEEE-SSS-EEEEEETTSEE-EEEEE-
T ss_pred c--ccEEEEEEcccCEEEEEEEccCCEEEEEEe-cCCCccEEEEEEecCCc-EEEEEcCCCeE-EEEEEC
Confidence 3 67999999888888775443 332333332 22345577778887776 89999999999 888775
No 354
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.86 E-value=0.33 Score=52.80 Aligned_cols=216 Identities=11% Similarity=0.107 Sum_probs=122.0
Q ss_pred EEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcccccc
Q 003822 460 EYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMH 539 (793)
Q Consensus 460 afsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~~~~~ 539 (793)
.|.|..+.++.+--..+.|.-|+..+++.. .+. +.+.+.++... ..+..|+++.. -+.+++.+++... ..+.
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~-~~~---~p~~~~~~~~~-d~~g~Lv~~~~--g~~~~~~~~~~~~-t~~~ 102 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKKR-VFP---SPGGFSSGALI-DAGGRLIACEH--GVRLLDPDTGGKI-TLLA 102 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCceE-EEE---CCCCcccceee-cCCCeEEEEcc--ccEEEeccCCcee-EEec
Confidence 477745556677777899999999876543 232 23345555544 34445555543 3667776544331 1100
Q ss_pred cCCceeEecCCCCeEEEEEccCCCEEEEEEC-----------CCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcE
Q 003822 540 YGAGTVTFDEFDQLTSVHVNSMDELFLASGY-----------SKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSI 608 (793)
Q Consensus 540 ~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~-----------Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~ 608 (793)
... .-......+.+.+.|++...+.... -|.++.+|. .+..++.+. .+-..-+.++|+|++..+
T Consensus 103 ~~~---~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~-~~~~~~NGla~SpDg~tl 177 (307)
T COG3386 103 EPE---DGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLD-DDLTIPNGLAFSPDGKTL 177 (307)
T ss_pred ccc---CCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeec-CcEEecCceEECCCCCEE
Confidence 000 0001133556667677665555433 133444444 466666665 456667899999999545
Q ss_pred EEEEeCCCeEEEEECCC--C---CccceEEccCCCC-eEEEEEecCCCEEEEEeCCC-eEEEEEcCCCcEEEEEeeecCC
Q 003822 609 FATSSFDQDVKLWDLRQ--K---PIQPCYTASSSKG-NVMVCFSPDDHYLLVSAVDN-EVRQLLAVDGRVHLNFGITATG 681 (793)
Q Consensus 609 LaTgs~Dg~IrIWDlrt--~---~~~~~~~l~~~~~-~vsv~fSpdg~~Lasgs~Dg-~I~IwDl~tg~~~~~l~~~~~~ 681 (793)
+++=+..+.|.-|++.. + ............+ +-.++...+|.+-+++..+| .|.+|+.. |+++..+...
T Consensus 178 y~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP--- 253 (307)
T COG3386 178 YVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLP--- 253 (307)
T ss_pred EEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECC---
Confidence 55555568888888762 1 1111122222122 22477788888775555444 89999987 9998888743
Q ss_pred CCCcEEEEEee
Q 003822 682 SSQNYTRSYYL 692 (793)
Q Consensus 682 ~~~v~s~afsp 692 (793)
...+.+++|--
T Consensus 254 ~~~~t~~~FgG 264 (307)
T COG3386 254 VKRPTNPAFGG 264 (307)
T ss_pred CCCCccceEeC
Confidence 24455666643
No 355
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=96.81 E-value=0.075 Score=60.47 Aligned_cols=185 Identities=16% Similarity=0.115 Sum_probs=107.8
Q ss_pred CCEEEEEEeeCCCCEEEEEE---cC-CcEEEEEcCCCCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEEC-CC-
Q 003822 499 NSVLGLCWLKKYPSKLIAGS---DN-GSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY-SK- 572 (793)
Q Consensus 499 ~~V~sv~fs~~~g~~Lasgs---~D-gtV~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~-Dg- 572 (793)
..+..-+|+ +++..++..+ .. ..+.++|+++++...... ....-..-+|+|++..++.+.. ||
T Consensus 193 ~~~~~p~ws-~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~----------~~g~~~~P~fspDG~~l~f~~~rdg~ 261 (425)
T COG0823 193 SLILTPAWS-PDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN----------FNGNNGAPAFSPDGSKLAFSSSRDGS 261 (425)
T ss_pred cceeccccC-cCCCceEEEEEecCCCceEEEEeccCCccceeec----------cCCccCCccCCCCCCEEEEEECCCCC
Confidence 456666776 5665543332 22 358999999876522111 1122234467789988888873 54
Q ss_pred -cEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeCCCe--EEEEECCCCCccceEEccCCCCeEEEEEecCC
Q 003822 573 -NIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQD--VKLWDLRQKPIQPCYTASSSKGNVMVCFSPDD 649 (793)
Q Consensus 573 -~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~Dg~--IrIWDlrt~~~~~~~~l~~~~~~vsv~fSpdg 649 (793)
.|+++|+..+...+ +.. -.+.-..=.|+|+|..++++.+..|. |.++|...... ...+..+.... .-.|+|||
T Consensus 262 ~~iy~~dl~~~~~~~-Lt~-~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~-~p~~SpdG 337 (425)
T COG0823 262 PDIYLMDLDGKNLPR-LTN-GFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNS-NPVWSPDG 337 (425)
T ss_pred ccEEEEcCCCCccee-ccc-CCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCc-CccCCCCC
Confidence 47777888766333 442 22222366799999666667777776 55555555432 23333332222 57899999
Q ss_pred CEEEEEeCC-Ce--EEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCCCeEEEEEe
Q 003822 650 HYLLVSAVD-NE--VRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNGRDYIVSGS 702 (793)
Q Consensus 650 ~~Lasgs~D-g~--I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs 702 (793)
++|+..+.. |. |.+.|+.++...+.+. .........|.++|..++.+++
T Consensus 338 ~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt----~~~~~e~ps~~~ng~~i~~~s~ 389 (425)
T COG0823 338 DKIVFESSSGGQWDIDKNDLASGGKIRILT----STYLNESPSWAPNGRMIMFSSG 389 (425)
T ss_pred CEEEEEeccCCceeeEEeccCCCCcEEEcc----ccccCCCCCcCCCCceEEEecc
Confidence 999887743 44 6667776665434442 2333345567777774444433
No 356
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.80 E-value=0.069 Score=48.61 Aligned_cols=101 Identities=19% Similarity=0.200 Sum_probs=67.6
Q ss_pred eEEEEEeCC---CCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCC
Q 003822 456 PRQFEYHPS---ISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMP 532 (793)
Q Consensus 456 V~~vafsP~---d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~ 532 (793)
|+++++... ..+-|++|+.|..|+||+-+ +.+..+. -++.|++++-. .+..|+.+..+|+|-+|+-....
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~---e~~~v~~L~~~--~~~~F~Y~l~NGTVGvY~~~~Rl 74 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEIT---ETDKVTSLCSL--GGGRFAYALANGTVGVYDRSQRL 74 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEe---cccceEEEEEc--CCCEEEEEecCCEEEEEeCccee
Confidence 566666553 33689999999999999854 5666664 34678888865 45789999999999999764422
Q ss_pred CcccccccCCceeEecCCCCeEEEEEccCCC----EEEEEECCCcEE
Q 003822 533 PSIRGMHYGAGTVTFDEFDQLTSVHVNSMDE----LFLASGYSKNIA 575 (793)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~----~lla~g~Dg~I~ 575 (793)
- .......+.++++..-++ .+++|-.+|.|-
T Consensus 75 W------------RiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 75 W------------RIKSKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred e------------eeccCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 1 112223456666544332 566666777764
No 357
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=96.80 E-value=0.94 Score=48.08 Aligned_cols=150 Identities=11% Similarity=0.187 Sum_probs=91.9
Q ss_pred CCCEEEEEEcCCcEEEEEcCCCCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEE-
Q 003822 510 YPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVF- 588 (793)
Q Consensus 510 ~g~~Lasgs~DgtV~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~- 588 (793)
.++.|+.|..+| +.+++...... .........|..+...+.-+.+++-+ |+.+.++++..-......
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~----------~~~i~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~ 73 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSK----------PTRILKLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSA 73 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCcc----------ceeEeecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccc
Confidence 578899999988 89999832221 11222223488888888777777765 499999999864433311
Q ss_pred ------------cccCCCCeEEEE--EcCCCCcEEEEEeCCCeEEEEECCCC--Cc-cceEEccCCCCeEEEEEecCCCE
Q 003822 589 ------------ADMHKEHINVVK--FSNHSPSIFATSSFDQDVKLWDLRQK--PI-QPCYTASSSKGNVMVCFSPDDHY 651 (793)
Q Consensus 589 ------------~~gh~~~V~sv~--fspdg~~~LaTgs~Dg~IrIWDlrt~--~~-~~~~~l~~~~~~vsv~fSpdg~~ 651 (793)
.-.....+...+ -.+.+...++. .....|.+|..... .- .....+.-...+..++|. ++.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~v-a~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~ 150 (275)
T PF00780_consen 74 PLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCV-AVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNK 150 (275)
T ss_pred cccccccccccccccccCCeeEEeeccccccceEEEE-EECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCE
Confidence 101223344443 11233234444 44558888887663 22 334444455677778888 677
Q ss_pred EEEEeCCCeEEEEEcCCCcEEEEE
Q 003822 652 LLVSAVDNEVRQLLAVDGRVHLNF 675 (793)
Q Consensus 652 Lasgs~Dg~I~IwDl~tg~~~~~l 675 (793)
++.|..+ ...+.|+.++....-+
T Consensus 151 i~v~~~~-~f~~idl~~~~~~~l~ 173 (275)
T PF00780_consen 151 ICVGTSK-GFYLIDLNTGSPSELL 173 (275)
T ss_pred EEEEeCC-ceEEEecCCCCceEEe
Confidence 8888755 4788999987664433
No 358
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.78 E-value=0.088 Score=62.32 Aligned_cols=232 Identities=14% Similarity=0.136 Sum_probs=124.0
Q ss_pred CCCEEEEEeCCC------eEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcC------CcEEEEEcCCCC
Q 003822 465 ISCLMVFGTLDG------EIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDN------GSLKLYDIRHMP 532 (793)
Q Consensus 465 d~~~Lasgs~DG------~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~D------gtV~vWDl~~~~ 532 (793)
.+.+++.|+.++ .+..||..++......... +...-.+++.. ++...++||.| .++..||..+.+
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~-~~r~~~~~~~~--~~~lYv~GG~~~~~~~l~~ve~YD~~~~~ 360 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMP-SPRCRVGVAVL--NGKLYVVGGYDSGSDRLSSVERYDPRTNQ 360 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCC-cccccccEEEE--CCEEEEEccccCCCcccceEEEecCCCCc
Confidence 456777777763 5888998887655444432 33344555554 66788899988 346677777655
Q ss_pred CcccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCC-----cEEEEECCCCcEEEEEcccCCCCeEEEEEcC-CCC
Q 003822 533 PSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSK-----NIALYDINSGRRLQVFADMHKEHINVVKFSN-HSP 606 (793)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg-----~I~IWDl~tg~~l~~~~~gh~~~V~sv~fsp-dg~ 606 (793)
- ....... ... .. .+++. -.+..+++||.|| +|-.||..+.+.-..-. ............ +|
T Consensus 361 W--~~~a~M~---~~R--~~-~~v~~-l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~--m~~~r~~~gv~~~~g- 428 (571)
T KOG4441|consen 361 W--TPVAPMN---TKR--SD-FGVAV-LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAP--MLTRRSGHGVAVLGG- 428 (571)
T ss_pred e--eccCCcc---Ccc--cc-ceeEE-ECCEEEEEeccccccccccEEEecCCCCcccccCC--CCcceeeeEEEEECC-
Confidence 2 2111100 000 11 11111 1455666666664 47788888654322211 111222222222 44
Q ss_pred cEEEEEeCCC------eEEEEECCCCCccceEEccCCCCeEEEEEecCCCEEEEEeCCC-----eEEEEEcCCCcEEEEE
Q 003822 607 SIFATSSFDQ------DVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLVSAVDN-----EVRQLLAVDGRVHLNF 675 (793)
Q Consensus 607 ~~LaTgs~Dg------~IrIWDlrt~~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs~Dg-----~I~IwDl~tg~~~~~l 675 (793)
.+.++|+.++ ++..||..++....+...........++. -++...++|+.|+ +|..||..+.+....-
T Consensus 429 ~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~ 507 (571)
T KOG4441|consen 429 KLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAV-LNGKIYVVGGFDGTSALSSVERYDPETNQWTMVA 507 (571)
T ss_pred EEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEE-ECCEEEEECCccCCCccceEEEEcCCCCceeEcc
Confidence 7888888654 47889998876554444433322223332 2567777777665 3677888776653321
Q ss_pred eeecCCCCCcEEEEE-eeCCCeEEEEEeCCCcE----EEEEEcCCCc
Q 003822 676 GITATGSSQNYTRSY-YLNGRDYIVSGSCDEHV----VRICCAQTGR 717 (793)
Q Consensus 676 ~~~~~~~~~v~s~af-spdg~~~L~Sgs~Dg~I----I~IWDv~tg~ 717 (793)
. .......... .-++. ..+.|+.||.- |..||..+.+
T Consensus 508 ~----m~~~rs~~g~~~~~~~-ly~vGG~~~~~~l~~ve~ydp~~d~ 549 (571)
T KOG4441|consen 508 P----MTSPRSAVGVVVLGGK-LYAVGGFDGNNNLNTVECYDPETDT 549 (571)
T ss_pred c----CccccccccEEEECCE-EEEEecccCccccceeEEcCCCCCc
Confidence 1 1111122222 23444 77788888743 2556555443
No 359
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=96.73 E-value=0.014 Score=67.39 Aligned_cols=112 Identities=13% Similarity=0.131 Sum_probs=82.2
Q ss_pred EEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEECCCCCcc-ceEEc
Q 003822 556 VHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQ-PCYTA 634 (793)
Q Consensus 556 v~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~Dg~IrIWDlrt~~~~-~~~~l 634 (793)
-++...+.+++.|++-|.+++|+-..++....-.++..+.+.....+++. .++|.|+..|.|.++-+...... ..+..
T Consensus 39 Tc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e-~lvAagt~~g~V~v~ql~~~~p~~~~~~t 117 (726)
T KOG3621|consen 39 TCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVE-YLVAAGTASGRVSVFQLNKELPRDLDYVT 117 (726)
T ss_pred EEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchh-HhhhhhcCCceEEeehhhccCCCcceeec
Confidence 34446888999999999999999887765544333444555666778877 88999999999999988764322 22222
Q ss_pred cC---CC-CeEEEEEecCCCEEEEEeCCCeEEEEEcCC
Q 003822 635 SS---SK-GNVMVCFSPDDHYLLVSAVDNEVRQLLAVD 668 (793)
Q Consensus 635 ~~---~~-~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~t 668 (793)
+. |. .+++++|+++|..+++|...|+|..-.+.+
T Consensus 118 ~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 118 PCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred cccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 22 22 344699999999999999999998877766
No 360
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.67 E-value=1.6 Score=49.45 Aligned_cols=82 Identities=12% Similarity=0.112 Sum_probs=52.9
Q ss_pred EEEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeC---------------CCeEEEE-EeCC
Q 003822 641 VMVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLN---------------GRDYIVS-GSCD 704 (793)
Q Consensus 641 vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspd---------------g~~~L~S-gs~D 704 (793)
.+++.+|++++.|+...=|+|.++|+.++..++.+++.....-. +....... ...+|+. +-.-
T Consensus 311 ~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~-wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyaprR 389 (415)
T PF14655_consen 311 ESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCG-WIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAPRR 389 (415)
T ss_pred EEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEE-EEEeecccccccccccccCCCCcceEEEEEEeccC
Confidence 36899999998888877799999999999887777643322110 00000010 0113333 4445
Q ss_pred CcEEEEEEcCCCcEEEeeee
Q 003822 705 EHVVRICCAQTGRRLRDISL 724 (793)
Q Consensus 705 g~II~IWDv~tg~~l~~~~L 724 (793)
|.+ .||.+++|.++..+..
T Consensus 390 g~l-EvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 390 GIL-EVWSMRQGPRVAAFNV 408 (415)
T ss_pred CeE-EEEecCCCCEEEEEEe
Confidence 666 9999999999984433
No 361
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=96.66 E-value=1.7 Score=49.25 Aligned_cols=288 Identities=12% Similarity=0.116 Sum_probs=147.6
Q ss_pred CCCCCEEEEEeCCCeEEEEECCCCe-----EEEEEeccCCCCCEEEEEEe---eCCCCEEEEEEcCCcEEEEEcCCCCCc
Q 003822 463 PSISCLMVFGTLDGEIVVVNHENEN-----IVSYIPSFGAMNSVLGLCWL---KKYPSKLIAGSDNGSLKLYDIRHMPPS 534 (793)
Q Consensus 463 P~d~~~Lasgs~DG~I~VWd~~t~~-----~i~~l~~~~h~~~V~sv~fs---~~~g~~Lasgs~DgtV~vWDl~~~~~~ 534 (793)
+.+...+++|+..|.++||+...+. .+-.. .-..+|..+..- +......++.-.-..+.+|.+......
T Consensus 34 ~~~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~---~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~ 110 (418)
T PF14727_consen 34 PSGSDKIIVGSYSGILRIYDPSGNEFQPEDLLLET---QLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGT 110 (418)
T ss_pred CCCccEEEEeccccEEEEEccCCCCCCCccEEEEE---ecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCC
Confidence 4466799999999999999986433 22222 334678887743 222333333355678888888432211
Q ss_pred ccccccCCceeEecCC--CCeEEEEEccCC-----CEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCc
Q 003822 535 IRGMHYGAGTVTFDEF--DQLTSVHVNSMD-----ELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPS 607 (793)
Q Consensus 535 ~~~~~~~~~~~~~~~~--~~V~sv~~s~~~-----~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~ 607 (793)
...-....-...+.|. .....+++-+-+ ..+.+-+.||.+.+|+-+.......+.. ---.-.+.|.+.. .
T Consensus 111 ~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~--~llPgPl~Y~~~t-D 187 (418)
T PF14727_consen 111 VEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD--FLLPGPLCYCPRT-D 187 (418)
T ss_pred cccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC--CCCCcCeEEeecC-C
Confidence 0000000001122222 223344433322 3455557899999999776544444431 1222347788877 7
Q ss_pred EEEEEeCCCeEEEEECCC---------------------CCccceEEccCCCCeEE---EEEecCCCEEEEEeCCCeEEE
Q 003822 608 IFATSSFDQDVKLWDLRQ---------------------KPIQPCYTASSSKGNVM---VCFSPDDHYLLVSAVDNEVRQ 663 (793)
Q Consensus 608 ~LaTgs~Dg~IrIWDlrt---------------------~~~~~~~~l~~~~~~vs---v~fSpdg~~Lasgs~Dg~I~I 663 (793)
.|++++.+..+.-|.... .+..+.+++.-...++. +.++.....+++-+ ...+.+
T Consensus 188 sfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~~~~~IvvLg-er~Lf~ 266 (418)
T PF14727_consen 188 SFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFSSSESDIVVLG-ERSLFC 266 (418)
T ss_pred EEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcCCCCceEEEEe-cceEEE
Confidence 899999888888886531 11223333333334443 33333334455544 355666
Q ss_pred EEcCCCcEEEEEeeecCCC-CCcEEEE--EeeCCCeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCCCCccceeeeccC
Q 003822 664 LLAVDGRVHLNFGITATGS-SQNYTRS--YYLNGRDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLRG 740 (793)
Q Consensus 664 wDl~tg~~~~~l~~~~~~~-~~v~s~a--fspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g 740 (793)
.+. +|.+....+...... -..+... ..+..+..++.++.++.+ .||. ..++++ ...+..
T Consensus 267 l~~-~G~l~~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~L-lVy~--d~~L~W--------------sA~l~~ 328 (418)
T PF14727_consen 267 LKD-NGSLRFQKRLDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTL-LVYE--DTTLVW--------------SAQLPH 328 (418)
T ss_pred EcC-CCeEEEEEecCCceeeEEEEEeecccCCCCceEEEEEecCCeE-EEEe--CCeEEE--------------ecCCCC
Confidence 664 465443333211000 0111111 112222248888899988 8873 333443 222221
Q ss_pred CccccCCccEEEEEEcCCCCceeeEeeEEEeCCCcEEEEcCCCCC
Q 003822 741 DPFRDFNMSILAAYTRPSSKSEIVKVNLLASTDHCDKECSHGQHS 785 (793)
Q Consensus 741 ~~~~~h~~~V~sva~~P~~~~~iv~~~ltaS~Dg~VkvW~~~~~~ 785 (793)
.| .-..++.-++-+..|+ +-+.+|.+.+-.++...
T Consensus 329 ~P------Val~v~~~~~~~G~IV----~Ls~~G~L~v~YLGTdP 363 (418)
T PF14727_consen 329 VP------VALSVANFNGLKGLIV----SLSDEGQLSVSYLGTDP 363 (418)
T ss_pred CC------EEEEecccCCCCceEE----EEcCCCcEEEEEeCCCC
Confidence 11 1122233333455666 67888888887766554
No 362
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=96.65 E-value=0.00065 Score=55.09 Aligned_cols=57 Identities=32% Similarity=0.528 Sum_probs=29.5
Q ss_pred eeeEEeeccccccccccccccccccccceeccccccchhhhHHHHHHhcCCcccceecce
Q 003822 148 RIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELRFQN 207 (793)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (793)
+|.+|.|+.+ .|+.++.+.|..||+|+.|++=..++..+ ...++..||+|++|.++.
T Consensus 2 ~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N~l~~i--~~~~f~~l~~L~~L~l~~ 58 (61)
T PF13855_consen 2 NLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNNNLTSI--PPDAFSNLPNLRYLDLSN 58 (61)
T ss_dssp TESEEEETSS-TESEECTTTTTTGTTESEEEETSSSESEE--ETTTTTTSTTESEEEETS
T ss_pred cCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCCccCcc--CHHHHcCCCCCCEEeCcC
Confidence 4455555543 55555555555555555555555555433 123455555555555544
No 363
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=96.63 E-value=0.4 Score=52.30 Aligned_cols=207 Identities=13% Similarity=0.105 Sum_probs=119.9
Q ss_pred EEEEeCCCCCEEEEEe--CCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcc
Q 003822 458 QFEYHPSISCLMVFGT--LDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSI 535 (793)
Q Consensus 458 ~vafsP~d~~~Lasgs--~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~ 535 (793)
.+++++ +++++...- -...|.|-|+..++.+..+...+ +..+ | |..+.-|.+-+.||++.-..+.......
T Consensus 99 ~~~ls~-dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG----C~~i-y-P~~~~~F~~lC~DGsl~~v~Ld~~Gk~~ 171 (342)
T PF06433_consen 99 MFALSA-DGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG----CWLI-Y-PSGNRGFSMLCGDGSLLTVTLDADGKEA 171 (342)
T ss_dssp GEEE-T-TSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS----EEEE-E-EEETTEEEEEETTSCEEEEEETSTSSEE
T ss_pred ceEEcc-CCcEEEEEccCCCCeEEEEECCCCceeeeecCCC----EEEE-E-ecCCCceEEEecCCceEEEEECCCCCEe
Confidence 356777 777766543 34579999999999999887654 2222 2 4455678899999999999998543322
Q ss_pred cccccCCceeEecCCCCeE-EEEEccCCCEEEEEECCCcEEEEECCCCcEE--EEEccc---------CCCCeEEEEEcC
Q 003822 536 RGMHYGAGTVTFDEFDQLT-SVHVNSMDELFLASGYSKNIALYDINSGRRL--QVFADM---------HKEHINVVKFSN 603 (793)
Q Consensus 536 ~~~~~~~~~~~~~~~~~V~-sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l--~~~~~g---------h~~~V~sv~fsp 603 (793)
... . .+.....+++. .-.+...++.++-.+.+|.|+--|+...... ..+.-. -.+.-.-+++++
T Consensus 172 ~~~---t-~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~ 247 (342)
T PF06433_consen 172 QKS---T-KVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHA 247 (342)
T ss_dssp EEE---E-EESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEET
T ss_pred Eee---c-cccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeecc
Confidence 211 1 11111222222 2233345667777888999998888765422 222100 012223477776
Q ss_pred CCCcEEEEEe--CCC-------eEEEEECCCCCccceEEccCCCCeEEEEEecCCC-EEEEEe-CCCeEEEEEcCCCcEE
Q 003822 604 HSPSIFATSS--FDQ-------DVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDH-YLLVSA-VDNEVRQLLAVDGRVH 672 (793)
Q Consensus 604 dg~~~LaTgs--~Dg-------~IrIWDlrt~~~~~~~~l~~~~~~vsv~fSpdg~-~Lasgs-~Dg~I~IwDl~tg~~~ 672 (793)
..+.+++.-. .+| .|.++|+.+++. +..++....+.++..+.+.+ .|++.+ .++.+.+||..+|+.+
T Consensus 248 ~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~kr--v~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~ 325 (342)
T PF06433_consen 248 ASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKR--VARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLV 325 (342)
T ss_dssp TTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEE--EEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EE
T ss_pred ccCeEEEEecCCCCCCccCCceEEEEEECCCCeE--EEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEE
Confidence 6534433321 122 277888888744 44443322344788888766 555544 5789999999999999
Q ss_pred EEEee
Q 003822 673 LNFGI 677 (793)
Q Consensus 673 ~~l~~ 677 (793)
++++.
T Consensus 326 ~~~~~ 330 (342)
T PF06433_consen 326 RSIEQ 330 (342)
T ss_dssp EEE--
T ss_pred eehhc
Confidence 88863
No 364
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.59 E-value=1.2 Score=47.07 Aligned_cols=196 Identities=11% Similarity=0.034 Sum_probs=117.0
Q ss_pred EEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCC--cEEEEEcCCCCCcccccccCCceeEecCCCCeEEEEEccCCCEE
Q 003822 488 IVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNG--SLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELF 565 (793)
Q Consensus 488 ~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~Dg--tV~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~l 565 (793)
.+..++. ....-...+.|. .++.++-+.+.-| .|+.+|+.+++..... .+...-.--.+.. -++.+
T Consensus 35 vv~~ypH-d~~aFTQGL~~~-~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~--------~l~~~~FgEGit~--~~d~l 102 (264)
T PF05096_consen 35 VVETYPH-DPTAFTQGLEFL-DDGTLYESTGLYGQSSLRKVDLETGKVLQSV--------PLPPRYFGEGITI--LGDKL 102 (264)
T ss_dssp EEEEEE---TT-EEEEEEEE-ETTEEEEEECSTTEEEEEEEETTTSSEEEEE--------E-TTT--EEEEEE--ETTEE
T ss_pred EEEECCC-CCcccCccEEec-CCCEEEEeCCCCCcEEEEEEECCCCcEEEEE--------ECCccccceeEEE--ECCEE
Confidence 4555542 333455667775 4677777777665 7999999987652211 1111111223333 24555
Q ss_pred EEEE-CCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEECCCCCccceEEccCCCCeE---
Q 003822 566 LASG-YSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV--- 641 (793)
Q Consensus 566 la~g-~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~~~~v--- 641 (793)
..-. .++...+||..+.+.+.++. ..+.=+.++. ++ ..|+.+.....+.++|..+.+............++
T Consensus 103 ~qLTWk~~~~f~yd~~tl~~~~~~~--y~~EGWGLt~--dg-~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~L 177 (264)
T PF05096_consen 103 YQLTWKEGTGFVYDPNTLKKIGTFP--YPGEGWGLTS--DG-KRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNL 177 (264)
T ss_dssp EEEESSSSEEEEEETTTTEEEEEEE---SSS--EEEE--CS-SCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---E
T ss_pred EEEEecCCeEEEEccccceEEEEEe--cCCcceEEEc--CC-CEEEEECCccceEEECCcccceEEEEEEEECCEECCCc
Confidence 5555 58999999999999999987 4556677774 55 44555555668999998876544433333333333
Q ss_pred -EEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecC------------CCCCcEEEEEeeCCCeEEEEE
Q 003822 642 -MVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITAT------------GSSQNYTRSYYLNGRDYIVSG 701 (793)
Q Consensus 642 -sv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~------------~~~~v~s~afspdg~~~L~Sg 701 (793)
-+.|- +|...|=.-....|...|..+|+....+....- ...-...+||.|.++.+++||
T Consensus 178 NELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 178 NELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 26665 566555566678899999999999887764210 123456789999888788887
No 365
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=96.52 E-value=0.77 Score=53.98 Aligned_cols=53 Identities=13% Similarity=0.209 Sum_probs=37.0
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCCCeEEEEEe
Q 003822 648 DDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNGRDYIVSGS 702 (793)
Q Consensus 648 dg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs 702 (793)
.|..+++++.+|.++.+|..+|+.+.+++.. ......-+.|.-+|+.|++..+
T Consensus 471 ~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g--~~~~a~P~ty~~~G~qYv~~~~ 523 (527)
T TIGR03075 471 AGDLVFYGTLEGYFKAFDAKTGEELWKFKTG--SGIVGPPVTYEQDGKQYVAVLS 523 (527)
T ss_pred CCcEEEEECCCCeEEEEECCCCCEeEEEeCC--CCceecCEEEEeCCEEEEEEEe
Confidence 4567778888999999999999999888652 2222233455567776766543
No 366
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.51 E-value=0.062 Score=64.84 Aligned_cols=160 Identities=13% Similarity=0.125 Sum_probs=105.1
Q ss_pred ceEEEEEeCCCCCEEEEEe-CCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEee----CCCCEEEEEEcCCcEEEEEcC
Q 003822 455 RPRQFEYHPSISCLMVFGT-LDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLK----KYPSKLIAGSDNGSLKLYDIR 529 (793)
Q Consensus 455 ~V~~vafsP~d~~~Lasgs-~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~----~~g~~Lasgs~DgtV~vWDl~ 529 (793)
.|..+-.|..+.++|+... ....|+-.|++.|+.+..+... ...+|..++=.. -.+..-+.|-.+..+..||.+
T Consensus 482 ~P~k~mL~~~d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~-~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR 560 (794)
T PF08553_consen 482 TPKKAMLHDQDRNMILLDPNNPNKLYKMDLERGKVVEEWKVH-DDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPR 560 (794)
T ss_pred CcchhhhhccccceEeecCCCCCceEEEecCCCcEEEEeecC-CCcceeEecccccccccCCCceEEEECCCceEEeccC
Confidence 3444445554666666543 4578999999999999999852 234466665210 123456677778899999998
Q ss_pred CCCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEE
Q 003822 530 HMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIF 609 (793)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~L 609 (793)
-....+.. .....+.......|++. ..++++++|+.+|.|++||- .|+..++.-.+-..+|..|..+.|| +++
T Consensus 561 ~~~~k~v~----~~~k~Y~~~~~Fs~~aT-t~~G~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DG-kwi 633 (794)
T PF08553_consen 561 LSGNKLVD----SQSKQYSSKNNFSCFAT-TEDGYIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADG-KWI 633 (794)
T ss_pred CCCCceee----ccccccccCCCceEEEe-cCCceEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCC-cEE
Confidence 64321111 11123344455677776 57899999999999999994 4444444433678999999999999 555
Q ss_pred EEEeCCCeEEEEEC
Q 003822 610 ATSSFDQDVKLWDL 623 (793)
Q Consensus 610 aTgs~Dg~IrIWDl 623 (793)
++.+ +..+.+++.
T Consensus 634 laTc-~tyLlLi~t 646 (794)
T PF08553_consen 634 LATC-KTYLLLIDT 646 (794)
T ss_pred EEee-cceEEEEEE
Confidence 4333 456777775
No 367
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.49 E-value=0.0075 Score=41.36 Aligned_cols=39 Identities=33% Similarity=0.550 Sum_probs=33.6
Q ss_pred CcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEE
Q 003822 582 GRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWD 622 (793)
Q Consensus 582 g~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~Dg~IrIWD 622 (793)
+++...+. .|...|+++.|++.+ .++++++.|+.+++||
T Consensus 2 ~~~~~~~~-~~~~~i~~~~~~~~~-~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLK-GHTGPVTSVAFSPDG-KYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEE-ecCCceeEEEECCCC-CEEEEecCCCeEEEcC
Confidence 34566666 688999999999988 7999999999999996
No 368
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=96.47 E-value=1.4 Score=48.55 Aligned_cols=245 Identities=13% Similarity=0.136 Sum_probs=118.6
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeE---EEEEe--ccCCCCCEEEEEEeeC--CCCEEEEEEc-C-------
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENI---VSYIP--SFGAMNSVLGLCWLKK--YPSKLIAGSD-N------- 520 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~---i~~l~--~~~h~~~V~sv~fs~~--~g~~Lasgs~-D------- 520 (793)
+++|+|.| ++.++++ ...|.|++++ ..+.. +..+. ..........++++|. ...+|..... .
T Consensus 4 P~~~a~~p-dG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 4 PRSMAFLP-DGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp EEEEEEET-TSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred ceEEEEeC-CCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 89999999 7877665 5599999999 44443 22221 1234567899999851 2234443332 1
Q ss_pred -CcEEEEEcCCCCCcccccccCCceeEe--cCCCCeEEEEEccCCCEEEEEECCCc-------------EEEEECCCCcE
Q 003822 521 -GSLKLYDIRHMPPSIRGMHYGAGTVTF--DEFDQLTSVHVNSMDELFLASGYSKN-------------IALYDINSGRR 584 (793)
Q Consensus 521 -gtV~vWDl~~~~~~~~~~~~~~~~~~~--~~~~~V~sv~~s~~~~~lla~g~Dg~-------------I~IWDl~tg~~ 584 (793)
..|.-|..................... .....-..|.|.|++..+++.|..+. |.-.+.. ++.
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~d-G~~ 159 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPD-GSI 159 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETT-SSB
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEeccc-CcC
Confidence 234444444431111100000000000 12234567999888877777664332 2222211 110
Q ss_pred -------------EEEEcccCCCCeEEEEEcCC-CCcEEEEE-eCCCeEEEEECCCC-----------------------
Q 003822 585 -------------LQVFADMHKEHINVVKFSNH-SPSIFATS-SFDQDVKLWDLRQK----------------------- 626 (793)
Q Consensus 585 -------------l~~~~~gh~~~V~sv~fspd-g~~~LaTg-s~Dg~IrIWDlrt~----------------------- 626 (793)
...+..|+. ....++|+|. | .++++= +.|+.=.|--++.+
T Consensus 160 p~dnP~~~~~~~~~~i~A~GlR-N~~~~~~d~~tg-~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~ 237 (331)
T PF07995_consen 160 PADNPFVGDDGADSEIYAYGLR-NPFGLAFDPNTG-RLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAP 237 (331)
T ss_dssp -TTSTTTTSTTSTTTEEEE--S-EEEEEEEETTTT-EEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGS
T ss_pred CCCCccccCCCceEEEEEeCCC-ccccEEEECCCC-cEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCcccccc
Confidence 011111222 2357899998 5 555432 22332222222211
Q ss_pred ----CccceEEccCCCCeEEEEEec-------CCCEEEEEeCCCeEEEEEcCCCcEEEEEe-eecCCCCCcEEEEEeeCC
Q 003822 627 ----PIQPCYTASSSKGNVMVCFSP-------DDHYLLVSAVDNEVRQLLAVDGRVHLNFG-ITATGSSQNYTRSYYLNG 694 (793)
Q Consensus 627 ----~~~~~~~l~~~~~~vsv~fSp-------dg~~Lasgs~Dg~I~IwDl~tg~~~~~l~-~~~~~~~~v~s~afspdg 694 (793)
...+.+.+..|..+..+.|-. .|.++++.-..+.|....+.++..+.... +.......+..+++.|||
T Consensus 238 ~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG 317 (331)
T PF07995_consen 238 SCPGFVPPVFAYPPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDG 317 (331)
T ss_dssp S-TTS---SEEETTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTS
T ss_pred CCCCcCccceeecCccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCC
Confidence 012445556666666666653 45566666666788888876554333222 222233368899999999
Q ss_pred CeEEEEEeCCCcE
Q 003822 695 RDYIVSGSCDEHV 707 (793)
Q Consensus 695 ~~~L~Sgs~Dg~I 707 (793)
. +.++-..+|.|
T Consensus 318 ~-Lyv~~d~~G~i 329 (331)
T PF07995_consen 318 A-LYVSDDSDGKI 329 (331)
T ss_dssp E-EEEEE-TTTTE
T ss_pred e-EEEEECCCCeE
Confidence 8 55555577876
No 369
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.39 E-value=1.1 Score=47.29 Aligned_cols=210 Identities=12% Similarity=0.064 Sum_probs=116.6
Q ss_pred EEEEEEeeCCCCEEEEEEcCCc-EEEEEcCCCCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEECC-----CcE
Q 003822 501 VLGLCWLKKYPSKLIAGSDNGS-LKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYS-----KNI 574 (793)
Q Consensus 501 V~sv~fs~~~g~~Lasgs~Dgt-V~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~D-----g~I 574 (793)
-..|+|+|..+.-++.+-.-|+ ..++|....+..+.... ......|.|. .|++++.++.++-+| |.|
T Consensus 70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s-~~~RHfyGHG------vfs~dG~~LYATEndfd~~rGVi 142 (366)
T COG3490 70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVS-QEGRHFYGHG------VFSPDGRLLYATENDFDPNRGVI 142 (366)
T ss_pred cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEec-ccCceeeccc------ccCCCCcEEEeecCCCCCCCceE
Confidence 3456777766777777777666 46888887665333222 1222223332 466788888877543 789
Q ss_pred EEEECCCC-cEEEEEcccCCCCeEEEEEcCCCCcEEEEEeCC-------C-----------eEEEEECCCCCccceEEcc
Q 003822 575 ALYDINSG-RRLQVFADMHKEHINVVKFSNHSPSIFATSSFD-------Q-----------DVKLWDLRQKPIQPCYTAS 635 (793)
Q Consensus 575 ~IWDl~tg-~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~D-------g-----------~IrIWDlrt~~~~~~~~l~ 635 (793)
-|||.+.+ +.+..+. .|.-....+.|.+|| ..++.+... | .+.+.|..++......+++
T Consensus 143 GvYd~r~~fqrvgE~~-t~GiGpHev~lm~DG-rtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp 220 (366)
T COG3490 143 GVYDAREGFQRVGEFS-THGIGPHEVTLMADG-RTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLP 220 (366)
T ss_pred EEEecccccceecccc-cCCcCcceeEEecCC-cEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCc
Confidence 99999853 4566777 587788899999999 666655420 1 1233343343333333333
Q ss_pred C--CCCeE-EEEEecCCCEEEEEeCCCe-----EEEEEcCCCcEEEEEeeecC----CCCCcEEEEEeeCCCeEEEEEeC
Q 003822 636 S--SKGNV-MVCFSPDDHYLLVSAVDNE-----VRQLLAVDGRVHLNFGITAT----GSSQNYTRSYYLNGRDYIVSGSC 703 (793)
Q Consensus 636 ~--~~~~v-sv~fSpdg~~Lasgs~Dg~-----I~IwDl~tg~~~~~l~~~~~----~~~~v~s~afspdg~~~L~Sgs~ 703 (793)
. +.-.+ .+...+||..++..-..|. --+=-...|+.+.-+..... -...+-+++...+.+ +++..|-
T Consensus 221 ~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~g-lV~lTSP 299 (366)
T COG3490 221 ASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDG-LVALTSP 299 (366)
T ss_pred hhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCC-eEEEecC
Confidence 1 11112 2666666665444322221 01111122333222221110 112344566666666 6777777
Q ss_pred CCcEEEEEEcCCCcEEE
Q 003822 704 DEHVVRICCAQTGRRLR 720 (793)
Q Consensus 704 Dg~II~IWDv~tg~~l~ 720 (793)
.|+..-+||..||..+.
T Consensus 300 ~GN~~vi~da~tG~vv~ 316 (366)
T COG3490 300 RGNRAVIWDAATGAVVS 316 (366)
T ss_pred CCCeEEEEEcCCCcEEe
Confidence 77666899999999887
No 370
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.39 E-value=0.45 Score=50.46 Aligned_cols=167 Identities=11% Similarity=0.132 Sum_probs=111.4
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcc
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSI 535 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~ 535 (793)
+.++.|+| +.+.|++......-.||=...|+.+.++++.+- ...-+|.|. .++.+.++--.++.+.++.+.......
T Consensus 88 vS~LTynp-~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~-~DpE~Ieyi-g~n~fvi~dER~~~l~~~~vd~~t~~~ 164 (316)
T COG3204 88 VSSLTYNP-DTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGF-SDPETIEYI-GGNQFVIVDERDRALYLFTVDADTTVI 164 (316)
T ss_pred ccceeeCC-CcceEEEecCCCceEEEEecCCceEEEeccccc-CChhHeEEe-cCCEEEEEehhcceEEEEEEcCCccEE
Confidence 78999999 667777777777777777778999999988663 345567786 566666666688999998887764422
Q ss_pred cccccCCceeEecC-CCCeEEEEEccCCCEEEEEECCCcEEEEECCCCc-E--EEEEcccC-------CCCeEEEEEcCC
Q 003822 536 RGMHYGAGTVTFDE-FDQLTSVHVNSMDELFLASGYSKNIALYDINSGR-R--LQVFADMH-------KEHINVVKFSNH 604 (793)
Q Consensus 536 ~~~~~~~~~~~~~~-~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~-~--l~~~~~gh-------~~~V~sv~fspd 604 (793)
.........-...+ ....-+++|.|.+..++++-.-.-+.||.+..+. . +.... .+ -..|.++.|++.
T Consensus 165 ~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~-~~~~~~~~f~~DvSgl~~~~~ 243 (316)
T COG3204 165 SAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASL-DPTADRDLFVLDVSGLEFNAI 243 (316)
T ss_pred eccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCccccccccc-CcccccceEeeccccceecCC
Confidence 21111000001111 3457899999999999998876666666554322 1 11111 11 235678889987
Q ss_pred CCcEEEEEeCCCeEEEEECCCC
Q 003822 605 SPSIFATSSFDQDVKLWDLRQK 626 (793)
Q Consensus 605 g~~~LaTgs~Dg~IrIWDlrt~ 626 (793)
.+.+++-+..++.+.-.|....
T Consensus 244 ~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 244 TNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred CCcEEEEecCCceEEEEecCCC
Confidence 7688888888998888887764
No 371
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.32 E-value=1.1 Score=47.18 Aligned_cols=196 Identities=13% Similarity=0.095 Sum_probs=114.2
Q ss_pred eEEEEEccCCCEEEEEECC--CcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEECCCCCccc
Q 003822 553 LTSVHVNSMDELFLASGYS--KNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQP 630 (793)
Q Consensus 553 V~sv~~s~~~~~lla~g~D--g~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~Dg~IrIWDlrt~~~~~ 630 (793)
..++.|..++..+-++|.- ..|+.+|+.+|+......-...-.--.++...+ .++.-.=.++...+||..+-+...
T Consensus 47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d--~l~qLTWk~~~~f~yd~~tl~~~~ 124 (264)
T PF05096_consen 47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGD--KLYQLTWKEGTGFVYDPNTLKKIG 124 (264)
T ss_dssp EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETT--EEEEEESSSSEEEEEETTTTEEEE
T ss_pred CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECC--EEEEEEecCCeEEEEccccceEEE
Confidence 5677775566666677753 579999999999877665223333345555533 455556678899999999875555
Q ss_pred eEEccCCCCeEEEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCC--CCcEEEEEeeCCCeEEEEEeCCCcEE
Q 003822 631 CYTASSSKGNVMVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGS--SQNYTRSYYLNGRDYIVSGSCDEHVV 708 (793)
Q Consensus 631 ~~~l~~~~~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~--~~v~s~afspdg~~~L~Sgs~Dg~II 708 (793)
.+..++.. ..++ .||+.|+.+.....++++|..+.+...++.+...+. ....-+.|. +|. ..|-.=....|
T Consensus 125 ~~~y~~EG--WGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~-IyANVW~td~I- 197 (264)
T PF05096_consen 125 TFPYPGEG--WGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGK-IYANVWQTDRI- 197 (264)
T ss_dssp EEE-SSS----EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTE-EEEEETTSSEE-
T ss_pred EEecCCcc--eEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCE-EEEEeCCCCeE-
Confidence 55555422 2344 578888888888899999999988888877653322 123334554 553 33333334455
Q ss_pred EEEEcCCCcEEEeeeecCCCCCccceeeeccCCc-cccCCccEEEEEEcCCCCceee
Q 003822 709 RICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDP-FRDFNMSILAAYTRPSSKSEIV 764 (793)
Q Consensus 709 ~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~-~~~h~~~V~sva~~P~~~~~iv 764 (793)
..-|..||+.+..+.+.+-. ....... ..+-....+++||+|.....++
T Consensus 198 ~~Idp~tG~V~~~iDls~L~-------~~~~~~~~~~~~~dVLNGIAyd~~~~~l~v 247 (264)
T PF05096_consen 198 VRIDPETGKVVGWIDLSGLR-------PEVGRDKSRQPDDDVLNGIAYDPETDRLFV 247 (264)
T ss_dssp EEEETTT-BEEEEEE-HHHH-------HHHTSTTST--TTS-EEEEEEETTTTEEEE
T ss_pred EEEeCCCCeEEEEEEhhHhh-------hcccccccccccCCeeEeEeEeCCCCEEEE
Confidence 78899999999844444311 1110000 0111357889999997655444
No 372
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=96.24 E-value=0.49 Score=53.42 Aligned_cols=194 Identities=9% Similarity=0.071 Sum_probs=104.6
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccC------CCCCEEEEEEee----CCC---CEEEEEEcCCc
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFG------AMNSVLGLCWLK----KYP---SKLIAGSDNGS 522 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~------h~~~V~sv~fs~----~~g---~~Lasgs~Dgt 522 (793)
|++++.+. -.++|.|..+|.+.|.|++....+..-.... ....|+++.|.- .++ -.+++|...|.
T Consensus 89 vtal~~S~--iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~ 166 (395)
T PF08596_consen 89 VTALKNSD--IGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGN 166 (395)
T ss_dssp EEEEEE-B--TSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSE
T ss_pred EeEEecCC--CcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeCCCC
Confidence 89999975 4599999999999999998888877644433 345688888852 122 36888999999
Q ss_pred EEEEEcCC-CCCcccccccCCceeEecCCCCeEEEE-EccCC--------------------CEEEEEECCCcEEEEECC
Q 003822 523 LKLYDIRH-MPPSIRGMHYGAGTVTFDEFDQLTSVH-VNSMD--------------------ELFLASGYSKNIALYDIN 580 (793)
Q Consensus 523 V~vWDl~~-~~~~~~~~~~~~~~~~~~~~~~V~sv~-~s~~~--------------------~~lla~g~Dg~I~IWDl~ 580 (793)
+.+|.+.- ....... ........+.++|..+. ++.+. +.+++...+..++++...
T Consensus 167 v~~fkIlp~~~g~f~v---~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~ 243 (395)
T PF08596_consen 167 VLTFKILPSSNGRFSV---QFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPP 243 (395)
T ss_dssp EEEEEEEE-GGG-EEE---EEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT
T ss_pred EEEEEEecCCCCceEE---EEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCC
Confidence 99998852 1110000 00011122334444444 21111 235666668899999999
Q ss_pred CCcEEEEEcccCCCCeEEEEEc-----CCCCcEEEEEeCCCeEEEEECCCCCccceEEccCCCC--eE-EEEEecCCCEE
Q 003822 581 SGRRLQVFADMHKEHINVVKFS-----NHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKG--NV-MVCFSPDDHYL 652 (793)
Q Consensus 581 tg~~l~~~~~gh~~~V~sv~fs-----pdg~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~~~--~v-sv~fSpdg~~L 652 (793)
+.+..++... ..-....+.+- ..+ ..|++-..+|.|++|.+-.-+......+..... .. ...++++|..+
T Consensus 244 ~~k~~~K~~~-~~~~~~~~~vv~~~~~~~~-~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~Gdi~ 321 (395)
T PF08596_consen 244 KSKGAHKSFD-DPFLCSSASVVPTISRNGG-YCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRNGDIF 321 (395)
T ss_dssp ---EEEEE-S-S-EEEEEEEEEEEE-EEEE-EEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TTS-EE
T ss_pred CCcccceeec-cccccceEEEEeecccCCc-eEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECCCCCEE
Confidence 8877665542 32233344442 234 788888999999999998764443333321111 11 25667777766
Q ss_pred EEEe
Q 003822 653 LVSA 656 (793)
Q Consensus 653 asgs 656 (793)
+-.+
T Consensus 322 ~~~g 325 (395)
T PF08596_consen 322 YWTG 325 (395)
T ss_dssp EE-S
T ss_pred EEeC
Confidence 5554
No 373
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.19 E-value=0.31 Score=55.78 Aligned_cols=143 Identities=13% Similarity=0.059 Sum_probs=77.4
Q ss_pred CCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEE
Q 003822 499 NSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYD 578 (793)
Q Consensus 499 ~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWD 578 (793)
-....+.++ |+|+.+++ ..||...++.....+. ..+ +.-....|.+ .+.+++-..+++|.++.
T Consensus 33 ~~p~~ls~n-pngr~v~V-~g~geY~iyt~~~~r~-----------k~~---G~g~~~vw~~-~n~yAv~~~~~~I~I~k 95 (443)
T PF04053_consen 33 IYPQSLSHN-PNGRFVLV-CGDGEYEIYTALAWRN-----------KAF---GSGLSFVWSS-RNRYAVLESSSTIKIYK 95 (443)
T ss_dssp S--SEEEE--TTSSEEEE-EETTEEEEEETTTTEE-----------EEE---EE-SEEEE-T-SSEEEEE-TTS-EEEEE
T ss_pred cCCeeEEEC-CCCCEEEE-EcCCEEEEEEccCCcc-----------ccc---CceeEEEEec-CccEEEEECCCeEEEEE
Confidence 346788887 78888888 4577888887332111 111 3345677766 66777777788899974
Q ss_pred CCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEECCCCCccceEEccCCCCeEEEEEecCCCEEEEEeCC
Q 003822 579 INSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLVSAVD 658 (793)
Q Consensus 579 l~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs~D 658 (793)
--+......+. ....+..+-. | .+|...+.+ .|.+||+.+++ .+..+... ++..+.|+++|.+++..+.+
T Consensus 96 n~~~~~~k~i~--~~~~~~~If~---G-~LL~~~~~~-~i~~yDw~~~~--~i~~i~v~-~vk~V~Ws~~g~~val~t~~ 165 (443)
T PF04053_consen 96 NFKNEVVKSIK--LPFSVEKIFG---G-NLLGVKSSD-FICFYDWETGK--LIRRIDVS-AVKYVIWSDDGELVALVTKD 165 (443)
T ss_dssp TTEE-TT-------SS-EEEEE----S-SSEEEEETT-EEEEE-TTT----EEEEESS--E-EEEEE-TTSSEEEEE-S-
T ss_pred cCccccceEEc--CCcccceEEc---C-cEEEEECCC-CEEEEEhhHcc--eeeEEecC-CCcEEEEECCCCEEEEEeCC
Confidence 33333333444 1223444433 6 566666544 89999999884 44444432 23569999999999999855
Q ss_pred CeEEEEEcCCC
Q 003822 659 NEVRQLLAVDG 669 (793)
Q Consensus 659 g~I~IwDl~tg 669 (793)
.+.|++....
T Consensus 166 -~i~il~~~~~ 175 (443)
T PF04053_consen 166 -SIYILKYNLE 175 (443)
T ss_dssp -SEEEEEE-HH
T ss_pred -eEEEEEecch
Confidence 6788775433
No 374
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=96.19 E-value=0.0041 Score=50.36 Aligned_cols=55 Identities=29% Similarity=0.539 Sum_probs=48.3
Q ss_pred eEeecccccccccc--cccccceeeEEeeccccccccccccccccccccceecccccc
Q 003822 128 EVLNLRSSRFRKLN--MIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETR 183 (793)
Q Consensus 128 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (793)
+.|+|+.++++.+. ....+++|++|+|. ...|+.++.++|..||+|+.|.+=+.+
T Consensus 4 ~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~-~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 4 ESLDLSNNKLTEIPPDSFSNLPNLETLDLS-NNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp SEEEETSSTESEECTTTTTTGTTESEEEET-SSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cEEECCCCCCCccCHHHHcCCCCCCEeEcc-CCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 57899999999887 56788999999999 889999999999999999999875443
No 375
>PHA02713 hypothetical protein; Provisional
Probab=96.17 E-value=0.13 Score=60.75 Aligned_cols=191 Identities=10% Similarity=0.106 Sum_probs=100.0
Q ss_pred CCCEEEEEeCC------CeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCC-----cEEEEEcCCCCC
Q 003822 465 ISCLMVFGTLD------GEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNG-----SLKLYDIRHMPP 533 (793)
Q Consensus 465 d~~~Lasgs~D------G~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~Dg-----tV~vWDl~~~~~ 533 (793)
++.+.+.||.+ ..+..||..+......-+....... .+++. .++...+.||.++ ++..||..+..-
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~-~~~~~--~~g~IYviGG~~~~~~~~sve~Ydp~~~~W 379 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCR-FSLAV--IDDTIYAIGGQNGTNVERTIECYTMGDDKW 379 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhc-eeEEE--ECCEEEEECCcCCCCCCceEEEEECCCCeE
Confidence 45788888754 3477889887754322221111111 22332 3677778888764 478899877543
Q ss_pred cccccccCCceeEecCCCCeEEEEEccCCCEEEEEECC-----------------------CcEEEEECCCCcEEEEEcc
Q 003822 534 SIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYS-----------------------KNIALYDINSGRRLQVFAD 590 (793)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~D-----------------------g~I~IWDl~tg~~l~~~~~ 590 (793)
. ........ ......+.+ ++..++.||.+ ..+..||..+.+-...-.
T Consensus 380 ~--~~~~mp~~-----r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~- 449 (557)
T PHA02713 380 K--MLPDMPIA-----LSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPN- 449 (557)
T ss_pred E--ECCCCCcc-----cccccEEEE--CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCC-
Confidence 1 11100000 011112222 45555556543 247788888765432111
Q ss_pred cCCCCeE-EEEEcCCCCcEEEEEeCCC------eEEEEECCC-CCccceEEccCCCCeEEEEEecCCCEEEEEeCCC--e
Q 003822 591 MHKEHIN-VVKFSNHSPSIFATSSFDQ------DVKLWDLRQ-KPIQPCYTASSSKGNVMVCFSPDDHYLLVSAVDN--E 660 (793)
Q Consensus 591 gh~~~V~-sv~fspdg~~~LaTgs~Dg------~IrIWDlrt-~~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs~Dg--~ 660 (793)
....... +++.. ++ .+.+.|+.++ .+..||..+ .+...+..++.......++.. +|+..++|+.++ .
T Consensus 450 m~~~r~~~~~~~~-~~-~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~-~~~iyv~Gg~~~~~~ 526 (557)
T PHA02713 450 FWTGTIRPGVVSH-KD-DIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH-DNTIMMLHCYESYML 526 (557)
T ss_pred CCcccccCcEEEE-CC-EEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE-CCEEEEEeeecceee
Confidence 1111111 22222 44 6778787642 467899987 555544444433322232222 678888888887 6
Q ss_pred EEEEEcCCCcE
Q 003822 661 VRQLLAVDGRV 671 (793)
Q Consensus 661 I~IwDl~tg~~ 671 (793)
+..||..+.+.
T Consensus 527 ~e~yd~~~~~W 537 (557)
T PHA02713 527 QDTFNVYTYEW 537 (557)
T ss_pred hhhcCcccccc
Confidence 77788777654
No 376
>PHA02713 hypothetical protein; Provisional
Probab=96.16 E-value=0.5 Score=56.00 Aligned_cols=219 Identities=10% Similarity=0.003 Sum_probs=106.5
Q ss_pred eEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcC------CcEEEEEcCCCCCcccccccCCceeEecCC
Q 003822 477 EIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDN------GSLKLYDIRHMPPSIRGMHYGAGTVTFDEF 550 (793)
Q Consensus 477 ~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~D------gtV~vWDl~~~~~~~~~~~~~~~~~~~~~~ 550 (793)
.+..||..+++....-+..... .-.+++. .++..++.||.+ ..+..||..+... ..... ... ..
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r-~~~~~a~--l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W--~~~~~----m~~-~R 342 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHI-INYASAI--VDNEIIIAGGYNFNNPSLNKVYKINIENKIH--VELPP----MIK-NR 342 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccc-cceEEEE--ECCEEEEEcCCCCCCCccceEEEEECCCCeE--eeCCC----Ccc-hh
Confidence 5677888776544322211111 1123333 356677777754 3467788776532 11110 000 00
Q ss_pred CCeEEEEEccCCCEEEEEECC-----CcEEEEECCCCcEEE--EEcccCCCCeEEEEEcCCCCcEEEEEeCCC-------
Q 003822 551 DQLTSVHVNSMDELFLASGYS-----KNIALYDINSGRRLQ--VFADMHKEHINVVKFSNHSPSIFATSSFDQ------- 616 (793)
Q Consensus 551 ~~V~sv~~s~~~~~lla~g~D-----g~I~IWDl~tg~~l~--~~~~gh~~~V~sv~fspdg~~~LaTgs~Dg------- 616 (793)
.....+. -++..++.||.+ .++..||..+.+-.. .+.. .......+.+ +| .+.+.|+.++
T Consensus 343 ~~~~~~~--~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~-~r~~~~~~~~--~g-~IYviGG~~~~~~~~~~ 416 (557)
T PHA02713 343 CRFSLAV--IDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPI-ALSSYGMCVL--DQ-YIYIIGGRTEHIDYTSV 416 (557)
T ss_pred hceeEEE--ECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCc-ccccccEEEE--CC-EEEEEeCCCcccccccc
Confidence 1112222 245556666654 348889988764332 2221 1111112223 45 7888887653
Q ss_pred ----------------eEEEEECCCCCccceEEccCCCCeEEEEEecCCCEEEEEeCC------CeEEEEEcCC-CcEEE
Q 003822 617 ----------------DVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLVSAVD------NEVRQLLAVD-GRVHL 673 (793)
Q Consensus 617 ----------------~IrIWDlrt~~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs~D------g~I~IwDl~t-g~~~~ 673 (793)
.+..||..+.+...+..+........++ .-+|+..+.|+.+ ..+..||..+ .+...
T Consensus 417 ~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~-~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~ 495 (557)
T PHA02713 417 HHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVV-SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWEL 495 (557)
T ss_pred cccccccccccccccceEEEECCCCCeEeecCCCCcccccCcEE-EECCEEEEEeCCCCCCccceeEEEecCCCCCCeeE
Confidence 4778888876544333222211111222 2246666666643 2467899887 44322
Q ss_pred EEeeecCCCCCcEEEEEeeCCCeEEEEEeCCC--cEEEEEEcCCCc
Q 003822 674 NFGITATGSSQNYTRSYYLNGRDYIVSGSCDE--HVVRICCAQTGR 717 (793)
Q Consensus 674 ~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg--~II~IWDv~tg~ 717 (793)
.-.. ..... ...+..-+|. +.+.||.|| .+ ..||..+.+
T Consensus 496 ~~~m--~~~r~-~~~~~~~~~~-iyv~Gg~~~~~~~-e~yd~~~~~ 536 (557)
T PHA02713 496 ITTT--ESRLS-ALHTILHDNT-IMMLHCYESYMLQ-DTFNVYTYE 536 (557)
T ss_pred cccc--Ccccc-cceeEEECCE-EEEEeeecceeeh-hhcCccccc
Confidence 1111 11111 1112233565 778888888 66 788877764
No 377
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.14 E-value=0.21 Score=45.53 Aligned_cols=102 Identities=19% Similarity=0.286 Sum_probs=69.9
Q ss_pred EEEEEEeeCCC---CEEEEEEcCCcEEEEEcCCCCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEE
Q 003822 501 VLGLCWLKKYP---SKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALY 577 (793)
Q Consensus 501 V~sv~fs~~~g---~~Lasgs~DgtV~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IW 577 (793)
|+++++...++ +.|++|+.|..|++|+-+.- .......+.|.++.-.. .+.|+.+-.+|+|-+|
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e~------------~~Ei~e~~~v~~L~~~~-~~~F~Y~l~NGTVGvY 68 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDEI------------VAEITETDKVTSLCSLG-GGRFAYALANGTVGVY 68 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCcE------------EEEEecccceEEEEEcC-CCEEEEEecCCEEEEE
Confidence 66777765444 68999999999999987651 22333446677777644 4788888899999999
Q ss_pred ECCCCcEEEEEcccCCCCeEEEEEcC---CCCcEEEEEeCCCeEE
Q 003822 578 DINSGRRLQVFADMHKEHINVVKFSN---HSPSIFATSSFDQDVK 619 (793)
Q Consensus 578 Dl~tg~~l~~~~~gh~~~V~sv~fsp---dg~~~LaTgs~Dg~Ir 619 (793)
+- ...+...+ .+..++++.+.. +|-.-|++|-.+|.|-
T Consensus 69 ~~--~~RlWRiK--SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 69 DR--SQRLWRIK--SKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eC--cceeeeec--cCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 75 34455555 333466665543 3445788888888764
No 378
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.08 E-value=0.025 Score=64.74 Aligned_cols=93 Identities=12% Similarity=0.140 Sum_probs=74.0
Q ss_pred CCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeE-EEEEcCCCCcEEEEEeCCCeEEEEECCCCCcc
Q 003822 551 DQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHIN-VVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQ 629 (793)
Q Consensus 551 ~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~-sv~fspdg~~~LaTgs~Dg~IrIWDlrt~~~~ 629 (793)
..+.-+.|+|.-+.++.+..+|.|.+..++ .+.+.++. -|...++ +++|.||| +++|.|-.||+|++.|..++...
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip-~p~~~v~~sL~W~~DG-kllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIP-IPGENVTASLCWRPDG-KLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec-cceeEecc-CCCCccceeeeecCCC-CEEEEEecCCeEEEEEccCCCce
Confidence 347788999999999999999999999988 88888888 3777777 99999998 99999999999999999987544
Q ss_pred ceEEccCCCCeEEEEEe
Q 003822 630 PCYTASSSKGNVMVCFS 646 (793)
Q Consensus 630 ~~~~l~~~~~~vsv~fS 646 (793)
.-..+.....+.++-|+
T Consensus 98 ~~~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 98 VSFLFSVETDISKGIWD 114 (665)
T ss_pred eccccccccchheeecc
Confidence 33223333344446665
No 379
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=96.08 E-value=3.5 Score=46.68 Aligned_cols=203 Identities=16% Similarity=0.182 Sum_probs=107.0
Q ss_pred EEEEeeCCCCEEEEE-EcCCc----EEEEEcCCCCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEECC------
Q 003822 503 GLCWLKKYPSKLIAG-SDNGS----LKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYS------ 571 (793)
Q Consensus 503 sv~fs~~~g~~Lasg-s~Dgt----V~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~D------ 571 (793)
...++ ++++++|.+ +..|. ++++|+++++.....+. . .....+.|.+++..++....+
T Consensus 128 ~~~~S-pdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~-------~---~~~~~~~W~~d~~~~~y~~~~~~~~~~ 196 (414)
T PF02897_consen 128 GFSVS-PDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIE-------N---PKFSSVSWSDDGKGFFYTRFDEDQRTS 196 (414)
T ss_dssp EEEET-TTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEE-------E---EESEEEEECTTSSEEEEEECSTTTSS-
T ss_pred eeeEC-CCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccc-------c---cccceEEEeCCCCEEEEEEeCcccccc
Confidence 45555 788877755 44444 99999999754211111 0 011238898888888777633
Q ss_pred -----CcEEEEECCCCcE--EEEEcccCCCC-eEEEEEcCCCCcEEEEEeCC---CeEEEEECCCC---CccceEEccCC
Q 003822 572 -----KNIALYDINSGRR--LQVFADMHKEH-INVVKFSNHSPSIFATSSFD---QDVKLWDLRQK---PIQPCYTASSS 637 (793)
Q Consensus 572 -----g~I~IWDl~tg~~--l~~~~~gh~~~-V~sv~fspdg~~~LaTgs~D---g~IrIWDlrt~---~~~~~~~l~~~ 637 (793)
..|+.|.+.+... ...+....... ...+..++++..+++..... ..+.+.|+... ...........
T Consensus 197 ~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~ 276 (414)
T PF02897_consen 197 DSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPRE 276 (414)
T ss_dssp CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESS
T ss_pred cCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCC
Confidence 2388888887643 34444222233 66888999994444444443 34788888764 11222222223
Q ss_pred CCeEE-EEEecCCCEEEEEe---CCCeEEEEEcCCCcE--EEEEeeecCCCCCcEEEEEeeCCCeEEEEEeCCC--cEEE
Q 003822 638 KGNVM-VCFSPDDHYLLVSA---VDNEVRQLLAVDGRV--HLNFGITATGSSQNYTRSYYLNGRDYIVSGSCDE--HVVR 709 (793)
Q Consensus 638 ~~~vs-v~fSpdg~~Lasgs---~Dg~I~IwDl~tg~~--~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg--~II~ 709 (793)
.+... +... .+.+++... ..+.|...++.+... ....- ..+...+.-..+...+..+++....++ .+ +
T Consensus 277 ~~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l--~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l-~ 352 (414)
T PF02897_consen 277 DGVEYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVL--IPEDEDVSLEDVSLFKDYLVLSYRENGSSRL-R 352 (414)
T ss_dssp SS-EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEE--E--SSSEEEEEEEEETTEEEEEEEETTEEEE-E
T ss_pred CceEEEEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEE--cCCCCceeEEEEEEECCEEEEEEEECCccEE-E
Confidence 33333 3333 333333332 245777777776652 11111 123333444555566664666666666 45 8
Q ss_pred EEEcCCCcEEE
Q 003822 710 ICCAQTGRRLR 720 (793)
Q Consensus 710 IWDv~tg~~l~ 720 (793)
++++..+....
T Consensus 353 v~~~~~~~~~~ 363 (414)
T PF02897_consen 353 VYDLDDGKESR 363 (414)
T ss_dssp EEETT-TEEEE
T ss_pred EEECCCCcEEe
Confidence 88888555555
No 380
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.06 E-value=0.11 Score=62.73 Aligned_cols=142 Identities=9% Similarity=0.079 Sum_probs=87.7
Q ss_pred CEEEEE-EcCCcEEEEEcCCCCCcccccccCCceeEecCCCCeEEEEEcc-----CCCEEEEEECCCcEEEEECCCCc--
Q 003822 512 SKLIAG-SDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNS-----MDELFLASGYSKNIALYDINSGR-- 583 (793)
Q Consensus 512 ~~Lasg-s~DgtV~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~-----~~~~lla~g~Dg~I~IWDl~tg~-- 583 (793)
++|+.. .....|+-.|++.++.. .... +....+|..++-.. .....+.|-++..+..||.+-..
T Consensus 494 ~mil~~~~~~~~ly~mDLe~GKVV-~eW~-------~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k 565 (794)
T PF08553_consen 494 NMILLDPNNPNKLYKMDLERGKVV-EEWK-------VHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNK 565 (794)
T ss_pred ceEeecCCCCCceEEEecCCCcEE-EEee-------cCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCc
Confidence 444443 34567888888887652 1111 11112233333211 23456667788999999999632
Q ss_pred EEEE-Ec-ccCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEECCCCCccceEEccC-CCCeEEEEEecCCCEEEEEeCCCe
Q 003822 584 RLQV-FA-DMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASS-SKGNVMVCFSPDDHYLLVSAVDNE 660 (793)
Q Consensus 584 ~l~~-~~-~gh~~~V~sv~fspdg~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~-~~~~vsv~fSpdg~~Lasgs~Dg~ 660 (793)
.+.. .. -.......|++-+.+| +||+|+.+|.||+||-- +. .....+++ ..+++.|..+.||+||++.+ +..
T Consensus 566 ~v~~~~k~Y~~~~~Fs~~aTt~~G--~iavgs~~G~IRLyd~~-g~-~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~ty 640 (794)
T PF08553_consen 566 LVDSQSKQYSSKNNFSCFATTEDG--YIAVGSNKGDIRLYDRL-GK-RAKTALPGLGDPIIGIDVTADGKWILATC-KTY 640 (794)
T ss_pred eeeccccccccCCCceEEEecCCc--eEEEEeCCCcEEeeccc-ch-hhhhcCCCCCCCeeEEEecCCCcEEEEee-cce
Confidence 2321 10 0134567788888887 89999999999999943 32 22233444 45666799999999999888 566
Q ss_pred EEEEEc
Q 003822 661 VRQLLA 666 (793)
Q Consensus 661 I~IwDl 666 (793)
+.++++
T Consensus 641 LlLi~t 646 (794)
T PF08553_consen 641 LLLIDT 646 (794)
T ss_pred EEEEEE
Confidence 777775
No 381
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.96 E-value=0.032 Score=63.87 Aligned_cols=73 Identities=23% Similarity=0.372 Sum_probs=63.1
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEE-EEEEeeCCCCEEEEEEcCCcEEEEEcCCCCC
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVL-GLCWLKKYPSKLIAGSDNGSLKLYDIRHMPP 533 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~-sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~ 533 (793)
+.-+.|+| .-.++|++..+|.|.+..++ .+.+.+++. |...++ +++|- ++|+.+|+|-.||+|++-|++++..
T Consensus 23 i~~~ewnP-~~dLiA~~t~~gelli~R~n-~qRlwtip~--p~~~v~~sL~W~-~DGkllaVg~kdG~I~L~Dve~~~~ 96 (665)
T KOG4640|consen 23 IKRIEWNP-KMDLIATRTEKGELLIHRLN-WQRLWTIPI--PGENVTASLCWR-PDGKLLAVGFKDGTIRLHDVEKGGR 96 (665)
T ss_pred eEEEEEcC-ccchhheeccCCcEEEEEec-cceeEeccC--CCCccceeeeec-CCCCEEEEEecCCeEEEEEccCCCc
Confidence 67899999 88999999999999999988 667777764 445555 99997 7899999999999999999999765
No 382
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=95.84 E-value=4.2 Score=46.25 Aligned_cols=182 Identities=12% Similarity=0.052 Sum_probs=89.7
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCC-----EEEEEEeeCCCCEEEEEEcCCcEEEEEcCC
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNS-----VLGLCWLKKYPSKLIAGSDNGSLKLYDIRH 530 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~-----V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~ 530 (793)
+.++.|+. + ..|++-..||.+++||+. |+....+...-.... +....+. .+|-.+. ..++.+.+..-..
T Consensus 83 iv~~~wt~-~-e~LvvV~~dG~v~vy~~~-G~~~fsl~~~i~~~~v~e~~i~~~~~~-~~GivvL--t~~~~~~~v~n~~ 156 (410)
T PF04841_consen 83 IVGMGWTD-D-EELVVVQSDGTVRVYDLF-GEFQFSLGEEIEEEKVLECRIFAIWFY-KNGIVVL--TGNNRFYVVNNID 156 (410)
T ss_pred EEEEEECC-C-CeEEEEEcCCEEEEEeCC-CceeechhhhccccCcccccccccccC-CCCEEEE--CCCCeEEEEeCcc
Confidence 88899988 4 456677789999999986 333111110011112 2222221 2342222 2334443332222
Q ss_pred CCCcccccccCCceeE-ecCCCCeEE-EEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcE
Q 003822 531 MPPSIRGMHYGAGTVT-FDEFDQLTS-VHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSI 608 (793)
Q Consensus 531 ~~~~~~~~~~~~~~~~-~~~~~~V~s-v~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~ 608 (793)
.....+.......... ......... ..+.......+....++.+.+.+-...+. +. ..+++..++.+|++ ++
T Consensus 157 ~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i~--~~~~i~~iavSpng-~~ 230 (410)
T PF04841_consen 157 EPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---ID--SDGPIIKIAVSPNG-KF 230 (410)
T ss_pred ccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---cc--CCCCeEEEEECCCC-CE
Confidence 1111111100000000 000011111 22333445555555566666444332211 22 34689999999999 89
Q ss_pred EEEEeCCCeEEEEECCCCCccceEEccCCCCeEEEEEecCC
Q 003822 609 FATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDD 649 (793)
Q Consensus 609 LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~~~~vsv~fSpdg 649 (793)
+|.-..+|.+.+.+..-.+....+.......+..+.|.-+.
T Consensus 231 iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~d 271 (410)
T PF04841_consen 231 IALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGND 271 (410)
T ss_pred EEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCC
Confidence 99999999999987655443434444433455567776543
No 383
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=95.83 E-value=2.5 Score=51.73 Aligned_cols=244 Identities=11% Similarity=0.086 Sum_probs=127.3
Q ss_pred CCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCC------CEEEEEEee---------------CCCCEEEEEEcCCcEE
Q 003822 466 SCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMN------SVLGLCWLK---------------KYPSKLIAGSDNGSLK 524 (793)
Q Consensus 466 ~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~------~V~sv~fs~---------------~~g~~Lasgs~DgtV~ 524 (793)
+..+..++.++.|.-.|..+|+.+-.+....... ....+.+.. ..+..++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 4577778888999999999999887765422111 122344331 1234788888999999
Q ss_pred EEEcCCCCCcccccccCCceeEecC-----CCCeEEEEEcc--CCCEEEEEEC----------CCcEEEEECCCCcEEEE
Q 003822 525 LYDIRHMPPSIRGMHYGAGTVTFDE-----FDQLTSVHVNS--MDELFLASGY----------SKNIALYDINSGRRLQV 587 (793)
Q Consensus 525 vWDl~~~~~~~~~~~~~~~~~~~~~-----~~~V~sv~~s~--~~~~lla~g~----------Dg~I~IWDl~tg~~l~~ 587 (793)
-.|.++++.....-. ...+.+.. ...-..+.-.| .++.+++++. +|.|+-+|+++|+.+..
T Consensus 274 ALDA~TGk~~W~fg~--~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~ 351 (764)
T TIGR03074 274 ALDADTGKLCEDFGN--NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWA 351 (764)
T ss_pred EEECCCCCEEEEecC--CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeE
Confidence 999999876432111 00000000 00000000001 2566777643 58899999999999998
Q ss_pred EcccCCCCeEEEEEcCCCCcEEEEEeCCC-eEEEEECCCCCccceEEccCCCCeEEEEEecCCCEEEEEeCCCeEEEEEc
Q 003822 588 FADMHKEHINVVKFSNHSPSIFATSSFDQ-DVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLVSAVDNEVRQLLA 666 (793)
Q Consensus 588 ~~~gh~~~V~sv~fspdg~~~LaTgs~Dg-~IrIWDlrt~~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs~Dg~I~IwDl 666 (793)
+..+.... ... -+.+ .....++... ..--+|.+.+ .++.-.+... ..+-...+.....-..+.|.-.|.
T Consensus 352 ~~~g~p~~-~~~--~~~g-~~~~~gg~n~W~~~s~D~~~g---lvy~ptGn~~---pd~~g~~r~~~~n~y~~slvALD~ 421 (764)
T TIGR03074 352 WDPGNPDP-TAP--PAPG-ETYTRNTPNSWSVASYDEKLG---LVYLPMGNQT---PDQWGGDRTPADEKYSSSLVALDA 421 (764)
T ss_pred EecCCCCc-ccC--CCCC-CEeccCCCCccCceEEcCCCC---eEEEeCCCcc---ccccCCccccCcccccceEEEEeC
Confidence 86322111 111 1123 2222222221 2334444443 1122111111 111111111111122466788899
Q ss_pred CCCcEEEEEeeecCC------CCCcEEEEEee-CCC--eEEEEEeCCCcEEEEEEcCCCcEEEee
Q 003822 667 VDGRVHLNFGITATG------SSQNYTRSYYL-NGR--DYIVSGSCDEHVVRICCAQTGRRLRDI 722 (793)
Q Consensus 667 ~tg~~~~~l~~~~~~------~~~v~s~afsp-dg~--~~L~Sgs~Dg~II~IWDv~tg~~l~~~ 722 (793)
.||+..-.++..++. .....-+.+.. +|+ ..++.++.+|.+ ++.|.+||+.+...
T Consensus 422 ~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~-~vlDr~tG~~l~~~ 485 (764)
T TIGR03074 422 TTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQI-YVLDRRTGEPIVPV 485 (764)
T ss_pred CCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEE-EEEECCCCCEEeec
Confidence 999887666531110 01111122222 442 378999999999 99999999999843
No 384
>PRK13616 lipoprotein LpqB; Provisional
Probab=95.75 E-value=0.95 Score=53.84 Aligned_cols=149 Identities=10% Similarity=0.024 Sum_probs=84.7
Q ss_pred CeEEEEEccCCCEEEEEE------CCC--cEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeCC--------
Q 003822 552 QLTSVHVNSMDELFLASG------YSK--NIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFD-------- 615 (793)
Q Consensus 552 ~V~sv~~s~~~~~lla~g------~Dg--~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~D-------- 615 (793)
.+.+.++++++..++... .|+ .+.+++.. +.. ..+..+. ..+.-.|+|+| ..+++....
T Consensus 351 ~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~g~--~~t~PsWspDG-~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 351 NITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLEGH--SLTRPSWSLDA-DAVWVVVDGNTVVRVIR 425 (591)
T ss_pred CcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeecCC--CCCCceECCCC-CceEEEecCcceEEEec
Confidence 567888989988887775 243 45555643 322 3333222 37788999998 555555422
Q ss_pred ----CeEEEEECCCCCccceEEccCCCCeEEEEEecCCCEEEEEeCCCeEEE---EEcCCCcEEE--EEeeecCCCCCcE
Q 003822 616 ----QDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLVSAVDNEVRQ---LLAVDGRVHL--NFGITATGSSQNY 686 (793)
Q Consensus 616 ----g~IrIWDlrt~~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs~Dg~I~I---wDl~tg~~~~--~l~~~~~~~~~v~ 686 (793)
+.+.+.++..+.... . ....+..+.|||||..++... ++.|++ -....|.... .......-...+.
T Consensus 426 ~~~~gql~~~~vd~ge~~~--~--~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~ 500 (591)
T PRK13616 426 DPATGQLARTPVDASAVAS--R--VPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAV 500 (591)
T ss_pred cCCCceEEEEeccCchhhh--c--cCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccc
Confidence 233333444332221 1 122455699999999998877 577776 4544554111 0111122222357
Q ss_pred EEEEeeCCCeEEEEEeCCCcEEEEEEc
Q 003822 687 TRSYYLNGRDYIVSGSCDEHVVRICCA 713 (793)
Q Consensus 687 s~afspdg~~~L~Sgs~Dg~II~IWDv 713 (793)
.+.|..++. |+.+..++.. .+|.+
T Consensus 501 ~l~W~~~~~--L~V~~~~~~~-~v~~v 524 (591)
T PRK13616 501 SLDWRTGDS--LVVGRSDPEH-PVWYV 524 (591)
T ss_pred cceEecCCE--EEEEecCCCC-ceEEE
Confidence 788999997 4455555555 56654
No 385
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=95.72 E-value=0.03 Score=38.20 Aligned_cols=38 Identities=24% Similarity=0.457 Sum_probs=30.9
Q ss_pred eEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEE
Q 003822 487 NIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYD 527 (793)
Q Consensus 487 ~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWD 527 (793)
+....+. .|...|.++.|. +.+..+++++.|+.+++|+
T Consensus 3 ~~~~~~~--~~~~~i~~~~~~-~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLK--GHTGPVTSVAFS-PDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEE--ecCCceeEEEEC-CCCCEEEEecCCCeEEEcC
Confidence 3444454 678899999997 5668999999999999996
No 386
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=95.64 E-value=7.1 Score=47.70 Aligned_cols=255 Identities=10% Similarity=0.073 Sum_probs=132.5
Q ss_pred ceEEEEEeCC--CCC---EEEEEeCCCeEEEEEC-CCCeEEEE--EeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEE
Q 003822 455 RPRQFEYHPS--ISC---LMVFGTLDGEIVVVNH-ENENIVSY--IPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLY 526 (793)
Q Consensus 455 ~V~~vafsP~--d~~---~Lasgs~DG~I~VWd~-~t~~~i~~--l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vW 526 (793)
.|.|+.++|. +.+ +++.|..+..+.+.-. .+...+.. +....-+..|.-.++- .+..+|.++..||.+.-+
T Consensus 532 evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e-~d~~yLlvalgdG~l~~f 610 (1096)
T KOG1897|consen 532 EVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFE-GDIHYLLVALGDGALLYF 610 (1096)
T ss_pred eeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEee-ccceEEEEEcCCceEEEE
Confidence 3889999984 334 8899988776655433 33332222 2222223445555553 457899999999999877
Q ss_pred EcCCCCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEE-EEEcC-C
Q 003822 527 DIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINV-VKFSN-H 604 (793)
Q Consensus 527 Dl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~s-v~fsp-d 604 (793)
-+........... ...-+..|+.=-.|...+..-+.+.+|.-..+|--+ ++.+.+-. .-..+.. ..|+. .
T Consensus 611 v~d~~tg~lsd~K-----k~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n-~kLv~spl--s~kev~~~c~f~s~a 682 (1096)
T KOG1897|consen 611 VLDINTGQLSDRK-----KVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSN-GKLVYSPL--SLKEVNHMCPFNSDA 682 (1096)
T ss_pred EEEcccceEcccc-----ccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecC-CcEEEecc--chHHhhhhccccccc
Confidence 6655433221111 011122344444555566666666666666666544 33332211 0011111 12222 2
Q ss_pred CCcEEEEEeCCCeEEEEECCCCCccceEEccCCCCeEEEEEecCCCEEEEEeCC--------------CeEEEEEcCCCc
Q 003822 605 SPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLVSAVD--------------NEVRQLLAVDGR 670 (793)
Q Consensus 605 g~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs~D--------------g~I~IwDl~tg~ 670 (793)
.+..++++.. +.+++.-+..-+...+.+.+-+..+..+++.+....+++.+.- ..++++|..+-+
T Consensus 683 ~~d~l~~~~~-~~l~i~tid~iqkl~irtvpl~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~ 761 (1096)
T KOG1897|consen 683 YPDSLASANG-GALTIGTIDEIQKLHIRTVPLGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFE 761 (1096)
T ss_pred CCceEEEecC-CceEEEEecchhhcceeeecCCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCcee
Confidence 2344555553 4567766654333445556666666678888755555554321 146777777665
Q ss_pred EEEEEeeecC-CCCCcEEEEEeeCCCeEEEEEeC----------CCcEEEEEEcCCCcEEE
Q 003822 671 VHLNFGITAT-GSSQNYTRSYYLNGRDYIVSGSC----------DEHVVRICCAQTGRRLR 720 (793)
Q Consensus 671 ~~~~l~~~~~-~~~~v~s~afspdg~~~L~Sgs~----------Dg~II~IWDv~tg~~l~ 720 (793)
.+...+.... ....+.++.|..|...+++.|.. .|++ .|+.+..++.+.
T Consensus 762 vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRI-ivfe~~e~~~L~ 821 (1096)
T KOG1897|consen 762 VLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRI-IVFEFEELNSLE 821 (1096)
T ss_pred EEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceE-EEEEEecCCcee
Confidence 5443332111 11234455577774447777653 3566 666666644444
No 387
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=95.63 E-value=8.1 Score=47.40 Aligned_cols=159 Identities=11% Similarity=0.172 Sum_probs=90.2
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEE-------------EEEEeeC--CCCEEEEEEc----------
Q 003822 465 ISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVL-------------GLCWLKK--YPSKLIAGSD---------- 519 (793)
Q Consensus 465 d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~-------------sv~fs~~--~g~~Lasgs~---------- 519 (793)
.+..++.++.|+.+.-.|.++|+....+.. .+.|. .+. +++ .++.+++|+.
T Consensus 259 ~~~rV~~~T~Dg~LiALDA~TGk~~W~fg~---~G~vdl~~~~g~~~~g~~~~t-s~P~V~~g~VIvG~~v~d~~~~~~~ 334 (764)
T TIGR03074 259 CARRIILPTSDARLIALDADTGKLCEDFGN---NGTVDLTAGMGTTPPGYYYPT-SPPLVAGTTVVIGGRVADNYSTDEP 334 (764)
T ss_pred cCCEEEEecCCCeEEEEECCCCCEEEEecC---CCceeeecccCcCCCcccccc-cCCEEECCEEEEEecccccccccCC
Confidence 345788899999999999999998866531 11110 011 111 1346666643
Q ss_pred CCcEEEEEcCCCCCcccccccCCc-------eeEecCC-CCe-EEEEEccCCCEEEEEE------------------CCC
Q 003822 520 NGSLKLYDIRHMPPSIRGMHYGAG-------TVTFDEF-DQL-TSVHVNSMDELFLASG------------------YSK 572 (793)
Q Consensus 520 DgtV~vWDl~~~~~~~~~~~~~~~-------~~~~~~~-~~V-~sv~~s~~~~~lla~g------------------~Dg 572 (793)
+|.|+-+|.++++........... ...+.+. ..+ ...++.+..+.++... ..+
T Consensus 335 ~G~I~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~ 414 (764)
T TIGR03074 335 SGVIRAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSS 414 (764)
T ss_pred CcEEEEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccc
Confidence 688999999999875543321100 0011111 111 1223333333333311 236
Q ss_pred cEEEEECCCCcEEEEEcccCCC--------CeEEEEEcC-CCC--cEEEEEeCCCeEEEEECCCCC
Q 003822 573 NIALYDINSGRRLQVFADMHKE--------HINVVKFSN-HSP--SIFATSSFDQDVKLWDLRQKP 627 (793)
Q Consensus 573 ~I~IWDl~tg~~l~~~~~gh~~--------~V~sv~fsp-dg~--~~LaTgs~Dg~IrIWDlrt~~ 627 (793)
.|.-.|+++|+....++..|.+ ...=+.+.. +|. ..++.++.+|.+.++|.++++
T Consensus 415 slvALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~ 480 (764)
T TIGR03074 415 SLVALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGE 480 (764)
T ss_pred eEEEEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCC
Confidence 6788899999999888742321 111122222 331 378889999999999998864
No 388
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=95.61 E-value=4 Score=44.53 Aligned_cols=193 Identities=15% Similarity=0.105 Sum_probs=102.9
Q ss_pred EEEEEEcCCcEEEEEcCCCCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcc--
Q 003822 513 KLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFAD-- 590 (793)
Q Consensus 513 ~Lasgs~DgtV~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~-- 590 (793)
++.+--..+.|.-|+..+++. ..+...+.+.++.....++.++++. ..+.+++..++..+..+..
T Consensus 39 L~w~DI~~~~i~r~~~~~g~~-----------~~~~~p~~~~~~~~~d~~g~Lv~~~--~g~~~~~~~~~~~~t~~~~~~ 105 (307)
T COG3386 39 LLWVDILGGRIHRLDPETGKK-----------RVFPSPGGFSSGALIDAGGRLIACE--HGVRLLDPDTGGKITLLAEPE 105 (307)
T ss_pred EEEEeCCCCeEEEecCCcCce-----------EEEECCCCcccceeecCCCeEEEEc--cccEEEeccCCceeEEecccc
Confidence 444545667777777765432 2333334455555545556666554 3355667665555333321
Q ss_pred --cCCCCeEEEEEcCCCCcEEEEEeC-----------CCeEEEEECCCCCccceEEccCC-CCeEEEEEecCCCEEEEEe
Q 003822 591 --MHKEHINVVKFSNHSPSIFATSSF-----------DQDVKLWDLRQKPIQPCYTASSS-KGNVMVCFSPDDHYLLVSA 656 (793)
Q Consensus 591 --gh~~~V~sv~fspdg~~~LaTgs~-----------Dg~IrIWDlrt~~~~~~~~l~~~-~~~vsv~fSpdg~~Lasgs 656 (793)
.-....+.+...|+| .+.++... -|.++.+|. .+. .+.....+ .....++|||||+.|+.+.
T Consensus 106 ~~~~~~r~ND~~v~pdG-~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~--~~~l~~~~~~~~NGla~SpDg~tly~aD 181 (307)
T COG3386 106 DGLPLNRPNDGVVDPDG-RIWFGDMGYFDLGKSEERPTGSLYRVDP-DGG--VVRLLDDDLTIPNGLAFSPDGKTLYVAD 181 (307)
T ss_pred CCCCcCCCCceeEcCCC-CEEEeCCCccccCccccCCcceEEEEcC-CCC--EEEeecCcEEecCceEECCCCCEEEEEe
Confidence 122456788899998 44443332 133444443 221 11111221 1122499999999888876
Q ss_pred C-CCeEEEEEcCC--CcEE--EEEeeecCCCCCcEEEEEeeCCCeEEEEEeCCC-cEEEEEEcCCCcEEEeeeec
Q 003822 657 V-DNEVRQLLAVD--GRVH--LNFGITATGSSQNYTRSYYLNGRDYIVSGSCDE-HVVRICCAQTGRRLRDISLE 725 (793)
Q Consensus 657 ~-Dg~I~IwDl~t--g~~~--~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg-~II~IWDv~tg~~l~~~~L~ 725 (793)
. .+.|.-|++.. +... ..+..........-.++...+|. +-+++..+| .| .+|+.. |+++..+.+.
T Consensus 182 T~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~-lw~~a~~~g~~v-~~~~pd-G~l~~~i~lP 253 (307)
T COG3386 182 TPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGN-LWVAAVWGGGRV-VRFNPD-GKLLGEIKLP 253 (307)
T ss_pred CCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCC-EEEecccCCceE-EEECCC-CcEEEEEECC
Confidence 5 47888887652 2111 11111111223444566677776 333444444 77 999888 9998844443
No 389
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.55 E-value=0.53 Score=54.13 Aligned_cols=151 Identities=13% Similarity=0.135 Sum_probs=93.9
Q ss_pred CCEEEEEEeeCCCCEEEEEE---cCCcEEEEEcCCCCCcccccccCCceeEecCCCCeEEEEEccC----CCEEEEEECC
Q 003822 499 NSVLGLCWLKKYPSKLIAGS---DNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSM----DELFLASGYS 571 (793)
Q Consensus 499 ~~V~sv~fs~~~g~~Lasgs---~DgtV~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~----~~~lla~g~D 571 (793)
.+|.+++|. ||+.++-.. .+|.+++=| ......+..|.++.|.|. ...+++.-..
T Consensus 20 HPvhGlaWT--DGkqVvLT~L~l~~gE~kfGd----------------s~viGqFEhV~GlsW~P~~~~~~paLLAVQHk 81 (671)
T PF15390_consen 20 HPVHGLAWT--DGKQVVLTDLQLHNGEPKFGD----------------SKVIGQFEHVHGLSWAPPCTADTPALLAVQHK 81 (671)
T ss_pred ccccceEec--CCCEEEEEeeeeeCCccccCC----------------ccEeeccceeeeeeecCcccCCCCceEEEecc
Confidence 478999995 776655432 233333222 122334466899999876 4588999999
Q ss_pred CcEEEEECCC-----CcEEEEEcccC--CCC--eEEEEEcCCCCcEEEEEeCCCeEEEEECCCCCccceEEccCCCCeEE
Q 003822 572 KNIALYDINS-----GRRLQVFADMH--KEH--INVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVM 642 (793)
Q Consensus 572 g~I~IWDl~t-----g~~l~~~~~gh--~~~--V~sv~fspdg~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~~~~vs 642 (793)
..|.+|.+.. ++.+....... .-+ .....|||.. .+|+.-.....-.+++++.........+.+..-+.+
T Consensus 82 khVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~-~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhC 160 (671)
T PF15390_consen 82 KHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKK-AILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHC 160 (671)
T ss_pred ceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCC-ceEEEEecCceeEeeeeeeCCceEEEeccCCceEEE
Confidence 9999998862 33332221001 111 2356799998 566665555444567777655454455666556667
Q ss_pred EEEecCCCEEEEEeCC-CeEEEEEcCC
Q 003822 643 VCFSPDDHYLLVSAVD-NEVRQLLAVD 668 (793)
Q Consensus 643 v~fSpdg~~Lasgs~D-g~I~IwDl~t 668 (793)
.+|.+||+.|+++-.. =.-++||-..
T Consensus 161 ACWT~DG~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 161 ACWTKDGQRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred EEecCcCCEEEEEeCCeEEEEEecCch
Confidence 9999999998877543 2447888543
No 390
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.46 E-value=0.14 Score=62.30 Aligned_cols=146 Identities=10% Similarity=0.043 Sum_probs=90.9
Q ss_pred CeEEEEEccCCCEEEEEE--CCCcEEEEECCCCcE--------EEEEcc--cCCCCeEEEEEcCCCCcEEEEEeCCCeEE
Q 003822 552 QLTSVHVNSMDELFLASG--YSKNIALYDINSGRR--------LQVFAD--MHKEHINVVKFSNHSPSIFATSSFDQDVK 619 (793)
Q Consensus 552 ~V~sv~~s~~~~~lla~g--~Dg~I~IWDl~tg~~--------l~~~~~--gh~~~V~sv~fspdg~~~LaTgs~Dg~Ir 619 (793)
++..+...++....++.. .+-.|..||+++-.. +..-.. .......++.|+|.-+...+.+..|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 444455545543333333 445789999986321 111110 12234568899998777788889999999
Q ss_pred EEECCCCCccceEEccCCCCeEEEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCC-CCCcEEEEEeeCCCeEE
Q 003822 620 LWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATG-SSQNYTRSYYLNGRDYI 698 (793)
Q Consensus 620 IWDlrt~~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~-~~~v~s~afspdg~~~L 698 (793)
+.-+.... ..+..++.....++++|+|.|+.+++|-..|++..|-. +++....+...+.- ...+.++.|-.... ++
T Consensus 182 V~~~~~~~-~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P-~leik~~ip~Pp~~e~yrvl~v~Wl~t~e-fl 258 (1405)
T KOG3630|consen 182 VKSTKQLA-QNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEP-SLEIKSEIPEPPVEENYRVLSVTWLSTQE-FL 258 (1405)
T ss_pred hhhhhhhh-hhhcccCcccceeeEEeccccceeeEecCCCeEEEeec-ccceeecccCCCcCCCcceeEEEEeccee-EE
Confidence 98776532 22233344445567999999999999999999998864 34443444332222 25677788877765 55
Q ss_pred EE
Q 003822 699 VS 700 (793)
Q Consensus 699 ~S 700 (793)
++
T Consensus 259 vv 260 (1405)
T KOG3630|consen 259 VV 260 (1405)
T ss_pred EE
Confidence 44
No 391
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.33 E-value=2.7 Score=44.50 Aligned_cols=233 Identities=11% Similarity=0.082 Sum_probs=123.1
Q ss_pred EEEEeCCCCCEEEEEeCCCe-EEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcC-----CcEEEEEcCCC
Q 003822 458 QFEYHPSISCLMVFGTLDGE-IVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDN-----GSLKLYDIRHM 531 (793)
Q Consensus 458 ~vafsP~d~~~Lasgs~DG~-I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~D-----gtV~vWDl~~~ 531 (793)
.|+|||..+.-++.+-.-|+ ..++|.+..+...++.......---.-.|+ ++|.+|+..-.| |.|-|||.+.+
T Consensus 72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs-~dG~~LYATEndfd~~rGViGvYd~r~~ 150 (366)
T COG3490 72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFS-PDGRLLYATENDFDPNRGVIGVYDAREG 150 (366)
T ss_pred CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccC-CCCcEEEeecCCCCCCCceEEEEecccc
Confidence 37788877777888877776 578999888776665432111111122455 789988876544 77999999864
Q ss_pred CCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEEC------C------------CcEEEEECCCCcEEEEEcc---
Q 003822 532 PPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY------S------------KNIALYDINSGRRLQVFAD--- 590 (793)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~------D------------g~I~IWDl~tg~~l~~~~~--- 590 (793)
-..+-.... +.-....+.+.+++..++.+.. | .++.+.|..+|..+.+..-
T Consensus 151 fqrvgE~~t--------~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~ 222 (366)
T COG3490 151 FQRVGEFST--------HGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPAS 222 (366)
T ss_pred cceeccccc--------CCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchh
Confidence 332211111 1122345666677777666532 1 1244555556655543321
Q ss_pred cCCCCeEEEEEcCCCCcEEEEEeCCCe-------EEEEECCCCCccceEEccCC------CCeEEEEEecCCCEEEEEe-
Q 003822 591 MHKEHINVVKFSNHSPSIFATSSFDQD-------VKLWDLRQKPIQPCYTASSS------KGNVMVCFSPDDHYLLVSA- 656 (793)
Q Consensus 591 gh~~~V~sv~fspdg~~~LaTgs~Dg~-------IrIWDlrt~~~~~~~~l~~~------~~~vsv~fSpdg~~Lasgs- 656 (793)
-+.-.|.-++..++| ..++.+-..|. |-.+ +.++....+.++.. ..+-+++.+-+..+++..+
T Consensus 223 l~~lSiRHld~g~dg-tvwfgcQy~G~~~d~ppLvg~~--~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP 299 (366)
T COG3490 223 LRQLSIRHLDIGRDG-TVWFGCQYRGPRNDLPPLVGHF--RKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSP 299 (366)
T ss_pred hhhcceeeeeeCCCC-cEEEEEEeeCCCccCCcceeec--cCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecC
Confidence 144567788888887 44444433321 1111 11111111111100 0111466665555555555
Q ss_pred CCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEE
Q 003822 657 VDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRIC 711 (793)
Q Consensus 657 ~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IW 711 (793)
..+...+||..+|..+..-.... ...+ .+... -++..+.+|.+ .++
T Consensus 300 ~GN~~vi~da~tG~vv~~a~l~d-----aaGv--a~~~~-gf~vssg~G~~-~~~ 345 (366)
T COG3490 300 RGNRAVIWDAATGAVVSEAALPD-----AAGV--AAAKG-GFAVSSGQGRI-IFY 345 (366)
T ss_pred CCCeEEEEEcCCCcEEecccccc-----cccc--eeccC-ceEEecCCceE-Eec
Confidence 45677899999999865543211 1111 12222 25555667777 555
No 392
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.33 E-value=0.063 Score=64.88 Aligned_cols=103 Identities=10% Similarity=-0.032 Sum_probs=78.3
Q ss_pred cEEEEEeCCCeEEEEECCCCCccceEEccCCCCeEEEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcE
Q 003822 607 SIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNY 686 (793)
Q Consensus 607 ~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~ 686 (793)
..++.|+..|.+-..|.+..-...........++.+++|+.+|+.++.|-.+|.|.+||...++..+.+......+..+.
T Consensus 100 ~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi 179 (1206)
T KOG2079|consen 100 VPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVI 179 (1206)
T ss_pred eeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEE
Confidence 57889999999999998875221122223334555799999999999999999999999999999888887666666677
Q ss_pred EEEEeeCCCeEEEEEeCCCcEEEEEEc
Q 003822 687 TRSYYLNGRDYIVSGSCDEHVVRICCA 713 (793)
Q Consensus 687 s~afspdg~~~L~Sgs~Dg~II~IWDv 713 (793)
.+.+..++. .++++...|. +|..
T Consensus 180 ~v~~t~~nS-~llt~D~~Gs---f~~l 202 (1206)
T KOG2079|consen 180 FVGRTSQNS-KLLTSDTGGS---FWKL 202 (1206)
T ss_pred EEEEeCCCc-EEEEccCCCc---eEEE
Confidence 777777777 7777766663 4654
No 393
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=95.21 E-value=11 Score=46.23 Aligned_cols=235 Identities=15% Similarity=0.142 Sum_probs=124.4
Q ss_pred eEEEE--EeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCC
Q 003822 456 PRQFE--YHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPP 533 (793)
Q Consensus 456 V~~va--fsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~ 533 (793)
++.+. +.+.-.++++.+-. +.-++..+... +......+.......+..+...++.++-... ..|++++-.....
T Consensus 407 ~w~lk~~v~~~~d~ylvlsf~-~eTrvl~i~~e--~ee~~~~gf~~~~~Tif~S~i~g~~lvQvTs-~~iRl~ss~~~~~ 482 (1096)
T KOG1897|consen 407 MWSLKSMVDENYDNYLVLSFI-SETRVLNISEE--VEETEDPGFSTDEQTIFCSTINGNQLVQVTS-NSIRLVSSAGLRS 482 (1096)
T ss_pred eeEeeccccccCCcEEEEEec-cceEEEEEccc--eEEeccccccccCceEEEEccCCceEEEEec-ccEEEEcchhhhh
Confidence 44454 55544445555543 34455555422 2222222333444445444445555555443 3677777652111
Q ss_pred cccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCC--CCc---E
Q 003822 534 SIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNH--SPS---I 608 (793)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspd--g~~---~ 608 (793)
.+.....++......+...++.++.++.+...++..+......+......|.|+.++|- +++ +
T Consensus 483 ------------~W~~p~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~ 550 (1096)
T KOG1897|consen 483 ------------EWRPPGKITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRL 550 (1096)
T ss_pred ------------cccCCCceEEEEEeecceEEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceE
Confidence 12222334444444455677777778888888888766333332234578999999976 444 8
Q ss_pred EEEEeCCCeEEEEECC-CCCccceEEccCCC---CeEEEEEecCCCEEEEEeCCCeEEE--EEcCCCcEEEEEeeecCCC
Q 003822 609 FATSSFDQDVKLWDLR-QKPIQPCYTASSSK---GNVMVCFSPDDHYLLVSAVDNEVRQ--LLAVDGRVHLNFGITATGS 682 (793)
Q Consensus 609 LaTgs~Dg~IrIWDlr-t~~~~~~~~l~~~~---~~vsv~fSpdg~~Lasgs~Dg~I~I--wDl~tg~~~~~l~~~~~~~ 682 (793)
++.|..+..+.+--.- .........+.+.. .++...+-.|..+|.++..||.+.- +|..+|.....-+ ..-|.
T Consensus 551 ~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk-~~lGt 629 (1096)
T KOG1897|consen 551 LAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKK-VTLGT 629 (1096)
T ss_pred EEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccc-cccCC
Confidence 8889887665544322 22111112222222 2233556667899999999998854 4556665422211 11234
Q ss_pred CCcEEEEEeeCCCeEEEEEeCCCcE
Q 003822 683 SQNYTRSYYLNGRDYIVSGSCDEHV 707 (793)
Q Consensus 683 ~~v~s~afspdg~~~L~Sgs~Dg~I 707 (793)
.++.-..|+..++..+++.|+--.+
T Consensus 630 ~P~~Lr~f~sk~~t~vfa~sdrP~v 654 (1096)
T KOG1897|consen 630 QPISLRTFSSKSRTAVFALSDRPTV 654 (1096)
T ss_pred CCcEEEEEeeCCceEEEEeCCCCEE
Confidence 4455555666665555555544333
No 394
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=95.16 E-value=6.9 Score=43.66 Aligned_cols=236 Identities=12% Similarity=0.069 Sum_probs=115.7
Q ss_pred EEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEee-CCCCEEEEEEcC------------------
Q 003822 460 EYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLK-KYPSKLIAGSDN------------------ 520 (793)
Q Consensus 460 afsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~-~~g~~Lasgs~D------------------ 520 (793)
.++| +.+.++-......|+-.|+++.+....+.. ....+-...|.. .++..++..-..
T Consensus 87 ~~s~-~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~--p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~ 163 (386)
T PF14583_consen 87 FLSP-DDRALYYVKNGRSLRRVDLDTLEERVVYEV--PDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYE 163 (386)
T ss_dssp EE-T-TSSEEEEEETTTEEEEEETTT--EEEEEE----TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHH
T ss_pred EEec-CCCeEEEEECCCeEEEEECCcCcEEEEEEC--CcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHh
Confidence 4567 556665555567888889998876555553 234444466642 344444332111
Q ss_pred ----CcEEEEEcCCCCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEEC----CC-cEEEEECCC-CcEEEEEcc
Q 003822 521 ----GSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY----SK-NIALYDINS-GRRLQVFAD 590 (793)
Q Consensus 521 ----gtV~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~----Dg-~I~IWDl~t-g~~l~~~~~ 590 (793)
..|.--|+.+++ ....+.....+..+.++|.++.+++-+. +. .-+||-+++ |...+.+..
T Consensus 164 a~p~~~i~~idl~tG~----------~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~ 233 (386)
T PF14583_consen 164 ARPHCRIFTIDLKTGE----------RKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHR 233 (386)
T ss_dssp C---EEEEEEETTT------------EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS-
T ss_pred hCCCceEEEEECCCCc----------eeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeec
Confidence 112222222222 2334445566888999999998888763 22 236676654 443443331
Q ss_pred cCC--CCeEEEEEcCCCCcEEEEEe----CCCeEEEEECCCCCccceEEccCCCCeEEEEEecCCCEEEEEeCCC-----
Q 003822 591 MHK--EHINVVKFSNHSPSIFATSS----FDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLVSAVDN----- 659 (793)
Q Consensus 591 gh~--~~V~sv~fspdg~~~LaTgs----~Dg~IrIWDlrt~~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs~Dg----- 659 (793)
|. ..+.-=-|.|+|..+...+. .+..|.-+|+.+++...+...+ .....--++||++++-=+.|.
T Consensus 234 -~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~p---~~~H~~ss~Dg~L~vGDG~d~p~~v~ 309 (386)
T PF14583_consen 234 -RMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEMP---WCSHFMSSPDGKLFVGDGGDAPVDVA 309 (386)
T ss_dssp ---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE----SEEEEEE-TTSSEEEEEE--------
T ss_pred -CCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeCC---ceeeeEEcCCCCEEEecCCCCCcccc
Confidence 22 23333458999955444333 2445777888887544333332 223466778999765533332
Q ss_pred -----------eEEEEEcCCCcEEEEEeee-----cCCCC--CcEEEEEeeCCCeEEEEEeCCCcEEEEEEc
Q 003822 660 -----------EVRQLLAVDGRVHLNFGIT-----ATGSS--QNYTRSYYLNGRDYIVSGSCDEHVVRICCA 713 (793)
Q Consensus 660 -----------~I~IwDl~tg~~~~~l~~~-----~~~~~--~v~s~afspdg~~~L~Sgs~Dg~II~IWDv 713 (793)
.|+++++..++........ ..++. .-....|+|||+..|.+....|.. .||=+
T Consensus 310 ~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~-~vY~v 380 (386)
T PF14583_consen 310 DAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPP-AVYLV 380 (386)
T ss_dssp -----------EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS--EEEEE
T ss_pred ccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCc-cEEEE
Confidence 5667888777653211100 01111 235678999999888888888887 77744
No 395
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.97 E-value=0.44 Score=53.92 Aligned_cols=144 Identities=15% Similarity=0.176 Sum_probs=91.0
Q ss_pred CCCEEEEEE-CCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCC------cEEEEEeCCCeEEEEECCCCCccceEE
Q 003822 561 MDELFLASG-YSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSP------SIFATSSFDQDVKLWDLRQKPIQPCYT 633 (793)
Q Consensus 561 ~~~~lla~g-~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~------~~LaTgs~Dg~IrIWDlrt~~~~~~~~ 633 (793)
+.+.++..+ ....++-.|++.|+.+..+.. |.. |+-+.+.|+.. ..-+.|-.|..|.-||.|-.....+..
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~-~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~ 421 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKF-EDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAV 421 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeec-cCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeee
Confidence 344555544 457788999999999999983 444 88888888652 122346668889999998643222222
Q ss_pred ccCCCCeE-----EEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCCCeEEEEEeCCCcEE
Q 003822 634 ASSSKGNV-----MVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNGRDYIVSGSCDEHVV 708 (793)
Q Consensus 634 l~~~~~~v-----sv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II 708 (793)
.+++.-.. |.+-. ...+|++|+.+|.|++||- .++.-.+. .++-+..+..+..+.+|. +|++. .+..+
T Consensus 422 ~q~kqy~~k~nFsc~aTT-~sG~IvvgS~~GdIRLYdr-i~~~AKTA--lPgLG~~I~hVdvtadGK-wil~T-c~tyL- 494 (644)
T KOG2395|consen 422 VQSKQYSTKNNFSCFATT-ESGYIVVGSLKGDIRLYDR-IGRRAKTA--LPGLGDAIKHVDVTADGK-WILAT-CKTYL- 494 (644)
T ss_pred eeccccccccccceeeec-CCceEEEeecCCcEEeehh-hhhhhhhc--ccccCCceeeEEeeccCc-EEEEe-cccEE-
Confidence 22332221 23323 3457999999999999996 55443332 244566788888999999 44433 45555
Q ss_pred EEEEc
Q 003822 709 RICCA 713 (793)
Q Consensus 709 ~IWDv 713 (793)
-+-++
T Consensus 495 lLi~t 499 (644)
T KOG2395|consen 495 LLIDT 499 (644)
T ss_pred EEEEE
Confidence 45444
No 396
>PHA03098 kelch-like protein; Provisional
Probab=94.85 E-value=0.82 Score=53.79 Aligned_cols=190 Identities=9% Similarity=0.100 Sum_probs=92.9
Q ss_pred CCCEEEEEeCCC------eEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcC-----CcEEEEEcCCCCC
Q 003822 465 ISCLMVFGTLDG------EIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDN-----GSLKLYDIRHMPP 533 (793)
Q Consensus 465 d~~~Lasgs~DG------~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~D-----gtV~vWDl~~~~~ 533 (793)
++.+++.|+.++ .+..||..+.+....-........ .+++. .++..++.||.+ ..+..||..+.+-
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~-~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W 370 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKN-PGVTV--FNNRIYVIGGIYNSISLNTVESWKPGESKW 370 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCccccc-ceEEE--ECCEEEEEeCCCCCEecceEEEEcCCCCce
Confidence 456777777543 577888887765432211111111 22332 356777788765 3467788776543
Q ss_pred cccccccCCceeEecCCCCeEEEEEccCCCEEEEEECC------CcEEEEECCCCcEEEE--EcccCCCCeEEEEEcCCC
Q 003822 534 SIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYS------KNIALYDINSGRRLQV--FADMHKEHINVVKFSNHS 605 (793)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~D------g~I~IWDl~tg~~l~~--~~~gh~~~V~sv~fspdg 605 (793)
. ..... .... .. .+++. -.+..++.||.+ +.+..||..+.+-... +..+.. . .+++. .++
T Consensus 371 ~--~~~~l----p~~r-~~-~~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~-~-~~~~~-~~~ 438 (534)
T PHA03098 371 R--EEPPL----IFPR-YN-PCVVN-VNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHY-G-GCAIY-HDG 438 (534)
T ss_pred e--eCCCc----CcCC-cc-ceEEE-ECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCcccc-C-ceEEE-ECC
Confidence 1 11100 0000 11 11121 245556666631 4588999887653321 111111 1 12222 244
Q ss_pred CcEEEEEeCCC--------eEEEEECCCCCccceEEccCCCCeEEEEEecCCCEEEEEeCC-----CeEEEEEcCCCcE
Q 003822 606 PSIFATSSFDQ--------DVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLVSAVD-----NEVRQLLAVDGRV 671 (793)
Q Consensus 606 ~~~LaTgs~Dg--------~IrIWDlrt~~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs~D-----g~I~IwDl~tg~~ 671 (793)
.+++.|+.++ .+.+||..+.+...+...+......+++. -+++..+.|+.+ +.+.+||..+.+.
T Consensus 439 -~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W 515 (534)
T PHA03098 439 -KIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCI-FNNKIYVVGGDKYEYYINEIEVYDDKTNTW 515 (534)
T ss_pred -EEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEE-ECCEEEEEcCCcCCcccceeEEEeCCCCEE
Confidence 6777776532 38889988765443322221111112221 256666666643 4677777766543
No 397
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=94.79 E-value=0.023 Score=56.50 Aligned_cols=99 Identities=28% Similarity=0.415 Sum_probs=53.1
Q ss_pred cceeEEeccCCchhhHHHHHhhcCCcee----eEeecccccccccc--cccccceeeEEeeccccccccccc-ccccccc
Q 003822 100 QKLRVVDLHDSSFGKDFIRNLSQRGLMC----EVLNLRSSRFRKLN--MIGEFKRIHTLNLDYSTSLTSFKE-DCFSCMP 172 (793)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 172 (793)
.+|++.||.++...+ | .||.+ +.|+|+.+++..+. +...|++|++|+|. ...|..+.+ ...++||
T Consensus 42 ~~L~~L~Ls~N~I~~-----l--~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~-~N~I~~l~~l~~L~~l~ 113 (175)
T PF14580_consen 42 DKLEVLDLSNNQITK-----L--EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLS-NNKISDLNELEPLSSLP 113 (175)
T ss_dssp TT--EEE-TTS--S---------TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-T-TS---SCCCCGGGGG-T
T ss_pred cCCCEEECCCCCCcc-----c--cCccChhhhhhcccCCCCCCccccchHHhCCcCCEEECc-CCcCCChHHhHHHHcCC
Confidence 378899998876543 2 24444 78999999999984 44569999999998 788888877 7889999
Q ss_pred ccceeccccccchhh---hHHHHHHhcCCcccceeccee
Q 003822 173 NLICLSMCETRVGNL---WTTIAALSKLPSLAELRFQNW 208 (793)
Q Consensus 173 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 208 (793)
+|..|++++--|.+. +.. .+.+||+|+-|=+|..
T Consensus 114 ~L~~L~L~~NPv~~~~~YR~~--vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 114 KLRVLSLEGNPVCEKKNYRLF--VIYKLPSLKVLDGQDV 150 (175)
T ss_dssp T--EEE-TT-GGGGSTTHHHH--HHHH-TT-SEETTEET
T ss_pred CcceeeccCCcccchhhHHHH--HHHHcChhheeCCEEc
Confidence 999999998877754 333 4678999999988764
No 398
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=94.79 E-value=1.5 Score=52.08 Aligned_cols=194 Identities=14% Similarity=0.121 Sum_probs=106.1
Q ss_pred EEEEeCCCCCEEEEEeCC------CeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCc-----EEEE
Q 003822 458 QFEYHPSISCLMVFGTLD------GEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGS-----LKLY 526 (793)
Q Consensus 458 ~vafsP~d~~~Lasgs~D------G~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~Dgt-----V~vW 526 (793)
+++... +.+.++|+.| .++..||..+++....-+...... -.+++- -+|...|+||.||. |-.|
T Consensus 327 ~~~~~~--~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~-~~~v~~--l~g~iYavGG~dg~~~l~svE~Y 401 (571)
T KOG4441|consen 327 GVAVLN--GKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRS-DFGVAV--LDGKLYAVGGFDGEKSLNSVECY 401 (571)
T ss_pred cEEEEC--CEEEEEccccCCCcccceEEEecCCCCceeccCCccCccc-cceeEE--ECCEEEEEeccccccccccEEEe
Confidence 344444 5788999988 357788888777554332222211 222332 47888899998865 6677
Q ss_pred EcCCCCCcccccccCCceeEecCCCCeEEEEEcc-CCCEEEEEECC------CcEEEEECCCCcEEE--EEcccCCCCeE
Q 003822 527 DIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNS-MDELFLASGYS------KNIALYDINSGRRLQ--VFADMHKEHIN 597 (793)
Q Consensus 527 Dl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~-~~~~lla~g~D------g~I~IWDl~tg~~l~--~~~~gh~~~V~ 597 (793)
|..+.+-.....- .....+..... .+..+++||.+ .++..||..+.+... .+.. -... .
T Consensus 402 Dp~~~~W~~va~m----------~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~-~R~~-~ 469 (571)
T KOG4441|consen 402 DPVTNKWTPVAPM----------LTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNT-RRSG-F 469 (571)
T ss_pred cCCCCcccccCCC----------CcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCccc-cccc-c
Confidence 7776554211100 00111222212 45555666643 457889988765432 2221 1111 1
Q ss_pred EEEEcCCCCcEEEEEeCCCe-----EEEEECCCCCccceEEccCCCCeEEEEEecCCCEEEEEeCCC-----eEEEEEcC
Q 003822 598 VVKFSNHSPSIFATSSFDQD-----VKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLVSAVDN-----EVRQLLAV 667 (793)
Q Consensus 598 sv~fspdg~~~LaTgs~Dg~-----IrIWDlrt~~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs~Dg-----~I~IwDl~ 667 (793)
.++.. ++ .+++.|+.|+. |..||..+.+...+...........++ .-+++..++|+.|| +|..||..
T Consensus 470 g~a~~-~~-~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~-~~~~~ly~vGG~~~~~~l~~ve~ydp~ 546 (571)
T KOG4441|consen 470 GVAVL-NG-KIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVV-VLGGKLYAVGGFDGNNNLNTVECYDPE 546 (571)
T ss_pred eEEEE-CC-EEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEE-EECCEEEEEecccCccccceeEEcCCC
Confidence 23333 34 78888988873 788999887655543333322222222 22466667777665 56677766
Q ss_pred CCcE
Q 003822 668 DGRV 671 (793)
Q Consensus 668 tg~~ 671 (793)
+.+.
T Consensus 547 ~d~W 550 (571)
T KOG4441|consen 547 TDTW 550 (571)
T ss_pred CCce
Confidence 6554
No 399
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=94.35 E-value=0.93 Score=52.22 Aligned_cols=152 Identities=11% Similarity=0.143 Sum_probs=94.6
Q ss_pred CCeEEEEEccCCCEEEEEE---CCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCC----CcEEEEEeCCCeEEEEEC
Q 003822 551 DQLTSVHVNSMDELFLASG---YSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHS----PSIFATSSFDQDVKLWDL 623 (793)
Q Consensus 551 ~~V~sv~~s~~~~~lla~g---~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg----~~~LaTgs~Dg~IrIWDl 623 (793)
.++.+++| -+|..++... .+|.+++=| .+.+..|+ .|..+.|.|-+ |.+|| ......|.||-+
T Consensus 20 HPvhGlaW-TDGkqVvLT~L~l~~gE~kfGd---s~viGqFE-----hV~GlsW~P~~~~~~paLLA-VQHkkhVtVWqL 89 (671)
T PF15390_consen 20 HPVHGLAW-TDGKQVVLTDLQLHNGEPKFGD---SKVIGQFE-----HVHGLSWAPPCTADTPALLA-VQHKKHVTVWQL 89 (671)
T ss_pred ccccceEe-cCCCEEEEEeeeeeCCccccCC---ccEeeccc-----eeeeeeecCcccCCCCceEE-EeccceEEEEEe
Confidence 57889999 4555555443 356655443 23455554 58899999863 34555 455678999988
Q ss_pred CCC-----Ccc--ceEEccCCCCeE--EEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCC
Q 003822 624 RQK-----PIQ--PCYTASSSKGNV--MVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNG 694 (793)
Q Consensus 624 rt~-----~~~--~~~~l~~~~~~v--sv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg 694 (793)
... +.. +...+...-.+. .+.|+|....|++-+....-.++++.........++ ...+.+.+.+|..||
T Consensus 90 ~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi--~~~G~IhCACWT~DG 167 (671)
T PF15390_consen 90 CPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADI--KTSGLIHCACWTKDG 167 (671)
T ss_pred ccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEec--cCCceEEEEEecCcC
Confidence 621 111 111222222222 378999999988877655445566655443333333 456678899999999
Q ss_pred CeEEEEEeCCCcEEEEEEcCC
Q 003822 695 RDYIVSGSCDEHVVRICCAQT 715 (793)
Q Consensus 695 ~~~L~Sgs~Dg~II~IWDv~t 715 (793)
++++++.+..=.- +|||-..
T Consensus 168 ~RLVVAvGSsLHS-yiWd~~q 187 (671)
T PF15390_consen 168 QRLVVAVGSSLHS-YIWDSAQ 187 (671)
T ss_pred CEEEEEeCCeEEE-EEecCch
Confidence 9777777666566 9998643
No 400
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=94.23 E-value=0.12 Score=55.83 Aligned_cols=109 Identities=17% Similarity=0.199 Sum_probs=74.3
Q ss_pred ccceeEEeccCCchhh---HHHHHhhcCCceeeEeeccccccccc------cccccc-ceeeEEeecccccccc----cc
Q 003822 99 DQKLRVVDLHDSSFGK---DFIRNLSQRGLMCEVLNLRSSRFRKL------NMIGEF-KRIHTLNLDYSTSLTS----FK 164 (793)
Q Consensus 99 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~-~~~~~~~~~~~~~~~~----~~ 164 (793)
+.+|+.++|.++.|.. .++..+.+. -.-+.|+|+.+++... .....+ .+|..|+|.++. ++. --
T Consensus 80 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~~ 157 (319)
T cd00116 80 GCGLQELDLSDNALGPDGCGVLESLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNR-LEGASCEAL 157 (319)
T ss_pred cCceeEEEccCCCCChhHHHHHHHHhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCc-CCchHHHHH
Confidence 6789999999888854 344455554 5578888888877631 123455 788999998664 441 11
Q ss_pred ccccccccccceeccccccchh-hh-HHHHHHhcCCcccceecceee
Q 003822 165 EDCFSCMPNLICLSMCETRVGN-LW-TTIAALSKLPSLAELRFQNWL 209 (793)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~ 209 (793)
...|..+++|+.|.+.+..+.. -. ...+++.++++|++|.+..|-
T Consensus 158 ~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~ 204 (319)
T cd00116 158 AKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNG 204 (319)
T ss_pred HHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCc
Confidence 3457778889999988887763 12 234578888899999887764
No 401
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.97 E-value=0.73 Score=52.23 Aligned_cols=153 Identities=14% Similarity=0.100 Sum_probs=97.8
Q ss_pred EeCCCCCEEE-EEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCC-------CEEEEEEcCCcEEEEEcCCCC
Q 003822 461 YHPSISCLMV-FGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYP-------SKLIAGSDNGSLKLYDIRHMP 532 (793)
Q Consensus 461 fsP~d~~~La-sgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g-------~~Lasgs~DgtV~vWDl~~~~ 532 (793)
.+..+.++|. +|.....++-.|++.|+.+..+... .. |.-+.+. ++. ..-+.|-.|..|.-||.+-..
T Consensus 340 L~~~dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~--~d-i~mv~~t-~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~ 415 (644)
T KOG2395|consen 340 LHRADSNLILMDGGEQDKLYKLDIERGKIVEEWKFE--DD-INMVDIT-PDFKFAQLTSEQTLVGLSDNSVFRIDPRVQG 415 (644)
T ss_pred hhccccceEeeCCCCcCcceeeecccceeeeEeecc--CC-cceeecc-CCcchhcccccccEEeecCCceEEecccccC
Confidence 3333445544 5556667888899999999998753 22 5555654 332 123446677889999988533
Q ss_pred CcccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEE
Q 003822 533 PSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATS 612 (793)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTg 612 (793)
..... ......|.......|.+. -.++++++|+.+|.|++||- .+...++.-.+-..+|..|..+.+| ++++ |
T Consensus 416 ~~kl~---~~q~kqy~~k~nFsc~aT-T~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadG-Kwil-~ 488 (644)
T KOG2395|consen 416 KNKLA---VVQSKQYSTKNNFSCFAT-TESGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADG-KWIL-A 488 (644)
T ss_pred cceee---eeeccccccccccceeee-cCCceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccC-cEEE-E
Confidence 31000 111112223334555555 46789999999999999998 5555554443788999999999999 5544 3
Q ss_pred eCCCeEEEEECC
Q 003822 613 SFDQDVKLWDLR 624 (793)
Q Consensus 613 s~Dg~IrIWDlr 624 (793)
..+.++.+-|+.
T Consensus 489 Tc~tyLlLi~t~ 500 (644)
T KOG2395|consen 489 TCKTYLLLIDTL 500 (644)
T ss_pred ecccEEEEEEEe
Confidence 346677777764
No 402
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=93.97 E-value=0.013 Score=66.62 Aligned_cols=106 Identities=24% Similarity=0.315 Sum_probs=85.1
Q ss_pred HHHHHHHHhccceeEEeccCCchhhHHHHHhhcCCceeeEeecccccccc-cccccccceeeEEeecccccccccccccc
Q 003822 90 FALSLMHAIDQKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRK-LNMIGEFKRIHTLNLDYSTSLTSFKEDCF 168 (793)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (793)
+.+...+.-.++++..+.+| .++.+++ .....|+.|+||.+.+.+ +|-.+.|.++|.|+|. ...|+.+... .
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~----~~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~-~n~i~~i~~~-l 114 (414)
T KOG0531|consen 42 LLLQLVPSDLEEIDLIFNLD-GSDEDLV----ESLTSLKELNLRQNLIAKILNHLSKLKSLEALDLY-DNKIEKIENL-L 114 (414)
T ss_pred cccccccchhhhhcchhccc-cchhhhH----HHhHhHHhhccchhhhhhhhcccccccceeeeecc-ccchhhcccc-h
Confidence 56677777777777777777 4555552 556678899999999999 8889999999999997 8899888776 8
Q ss_pred ccccccceeccccccchhhhHHHHHHhcCCcccceecc
Q 003822 169 SCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELRFQ 206 (793)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (793)
.||++|..|++|...|..++. |.+|+.|.+|=+-
T Consensus 115 ~~~~~L~~L~ls~N~I~~i~~----l~~l~~L~~L~l~ 148 (414)
T KOG0531|consen 115 SSLVNLQVLDLSFNKITKLEG----LSTLTLLKELNLS 148 (414)
T ss_pred hhhhcchheeccccccccccc----hhhccchhhheec
Confidence 899999999999999999885 4555556666543
No 403
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=93.93 E-value=0.14 Score=52.16 Aligned_cols=142 Identities=11% Similarity=0.040 Sum_probs=75.6
Q ss_pred EEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEECCCCCccceEEccCCCCeEE-
Q 003822 564 LFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVM- 642 (793)
Q Consensus 564 ~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~~~~vs- 642 (793)
.+.+.+.+|.|.-++++..+.-..-..-|...-.. +.....++.|+.+|.|.+|.........-....+...+.+
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~~~v----~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~ 107 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKESCRSERFIDEGQRV----VTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLG 107 (238)
T ss_pred hhccccCCcccccchhhhhhhhhhhhhhhhcceee----cccCceEEeecccceEEEecCCccchHHHhhhcccccceec
Confidence 45566678888888877543222111112222111 2222678899999999999887321111111111112212
Q ss_pred EEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCC-CCcEEEEEeeCCCeEEEEE--eCCCcEEEEEEcC
Q 003822 643 VCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGS-SQNYTRSYYLNGRDYIVSG--SCDEHVVRICCAQ 714 (793)
Q Consensus 643 v~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~-~~v~s~afspdg~~~L~Sg--s~Dg~II~IWDv~ 714 (793)
+.--.++.+..+++.||.|+.|++.-++.+.... .+. ........+..++ +++.+ |.|..+ +.|++.
T Consensus 108 Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g---~h~~~~~e~~ivv~sd~-~i~~a~~S~d~~~-k~W~ve 177 (238)
T KOG2444|consen 108 IPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVG---QHNFESGEELIVVGSDE-FLKIADTSHDRVL-KKWNVE 177 (238)
T ss_pred cccccccceeEEeccCCceeeeccccCceeeeec---cccCCCcceeEEecCCc-eEEeeccccchhh-hhcchh
Confidence 3333456688899999999999998877654432 122 2222233333333 44444 555555 555554
No 404
>PHA02790 Kelch-like protein; Provisional
Probab=93.93 E-value=3 Score=48.44 Aligned_cols=187 Identities=9% Similarity=-0.015 Sum_probs=91.2
Q ss_pred CCCEEEEEeCCC-----eEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcC--CcEEEEEcCCCCCcccc
Q 003822 465 ISCLMVFGTLDG-----EIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDN--GSLKLYDIRHMPPSIRG 537 (793)
Q Consensus 465 d~~~Lasgs~DG-----~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~D--gtV~vWDl~~~~~~~~~ 537 (793)
++.++++|+.++ ++..||..+++....-+....... .+++. .++...+.||.+ .++..||..+++- ..
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~-~~~v~--~~~~iYviGG~~~~~sve~ydp~~n~W--~~ 345 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLY-ASGVP--ANNKLYVVGGLPNPTSVERWFHGDAAW--VN 345 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhc-ceEEE--ECCEEEEECCcCCCCceEEEECCCCeE--EE
Confidence 456777787543 577788887665443222111111 22232 366777777754 3577888765432 11
Q ss_pred cccCCceeEecCCCCeEEEEEccCCCEEEEEECC---CcEEEEECCCCcEEEEEcccCC-CCeEEEEEcCCCCcEEEEEe
Q 003822 538 MHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYS---KNIALYDINSGRRLQVFADMHK-EHINVVKFSNHSPSIFATSS 613 (793)
Q Consensus 538 ~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~D---g~I~IWDl~tg~~l~~~~~gh~-~~V~sv~fspdg~~~LaTgs 613 (793)
..... ... .....+. -.+..++.||.+ ..+..||..+.+-...-.-... .....+.+ ++ .+.+.|+
T Consensus 346 ~~~l~----~~r-~~~~~~~--~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~--~~-~IYv~GG 415 (480)
T PHA02790 346 MPSLL----KPR-CNPAVAS--INNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVF--GR-RLFLVGR 415 (480)
T ss_pred CCCCC----CCC-cccEEEE--ECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEE--CC-EEEEECC
Confidence 11000 000 1111222 245555666643 4577899887654332110011 11112222 44 6777774
Q ss_pred CCCeEEEEECCCCCccceEEccCCCCeEEEEEecCCCEEEEEeCC-----CeEEEEEcCCCc
Q 003822 614 FDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLVSAVD-----NEVRQLLAVDGR 670 (793)
Q Consensus 614 ~Dg~IrIWDlrt~~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs~D-----g~I~IwDl~tg~ 670 (793)
.+.+||.++.+...+..++.......++. -+|+..++|+.+ ..+..||..+++
T Consensus 416 ---~~e~ydp~~~~W~~~~~m~~~r~~~~~~v-~~~~IYviGG~~~~~~~~~ve~Yd~~~~~ 473 (480)
T PHA02790 416 ---NAEFYCESSNTWTLIDDPIYPRDNPELII-VDNKLLLIGGFYRGSYIDTIEVYNNRTYS 473 (480)
T ss_pred ---ceEEecCCCCcEeEcCCCCCCccccEEEE-ECCEEEEECCcCCCcccceEEEEECCCCe
Confidence 57789998875544333322222222222 256666777643 345566665554
No 405
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.86 E-value=0.21 Score=60.57 Aligned_cols=98 Identities=17% Similarity=0.251 Sum_probs=71.3
Q ss_pred CCCEEEEEECCCcEEEEECCCC-cEEEEEcccCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEECCCCCccceEEccCC--
Q 003822 561 MDELFLASGYSKNIALYDINSG-RRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSS-- 637 (793)
Q Consensus 561 ~~~~lla~g~Dg~I~IWDl~tg-~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~-- 637 (793)
.+..++++++.|.+-..|+... .+...=. .-+++|++++|+.+| .+++.|-.+|.|.+||+..++....+...++
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne-~v~~~Vtsvafn~dg-~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~ 175 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNE-RVQGPVTSVAFNQDG-SLLLAGLGDGHVTVWDMHRAKILKVITEHGAPV 175 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCC-ccCCcceeeEecCCC-ceeccccCCCcEEEEEccCCcceeeeeecCCcc
Confidence 4455667777888888888753 1111111 256899999999999 8999999999999999999766665554443
Q ss_pred CCeEEEEEecCCCEEEEEeCCCe
Q 003822 638 KGNVMVCFSPDDHYLLVSAVDNE 660 (793)
Q Consensus 638 ~~~vsv~fSpdg~~Lasgs~Dg~ 660 (793)
.+++.+.+..++..++++...|.
T Consensus 176 t~vi~v~~t~~nS~llt~D~~Gs 198 (1206)
T KOG2079|consen 176 TGVIFVGRTSQNSKLLTSDTGGS 198 (1206)
T ss_pred ceEEEEEEeCCCcEEEEccCCCc
Confidence 34555777777778888887775
No 406
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=93.60 E-value=0.024 Score=56.76 Aligned_cols=74 Identities=27% Similarity=0.335 Sum_probs=51.7
Q ss_pred eeEEeccCCchhhHHHHHhhcCCceeeEeecccccccccccccccceeeEEeeccccccccccccccccccccceec
Q 003822 102 LRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLS 178 (793)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (793)
=|-+|||+.---..+ +|.+-==.=.+++|+.+.+||+...-.+.+||||-|. ...||.+..+==.-.|||.-|.
T Consensus 21 e~e~~LR~lkip~ie--nlg~~~d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~-nNrIt~I~p~L~~~~p~l~~L~ 94 (233)
T KOG1644|consen 21 ERELDLRGLKIPVIE--NLGATLDQFDAIDLTDNDLRKLDNLPHLPRLHTLLLN-NNRITRIDPDLDTFLPNLKTLI 94 (233)
T ss_pred ccccccccccccchh--hccccccccceecccccchhhcccCCCccccceEEec-CCcceeeccchhhhccccceEE
Confidence 456677664332222 1221111346899999999999999999999999999 6789998887666666665554
No 407
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=93.57 E-value=0.012 Score=67.01 Aligned_cols=76 Identities=29% Similarity=0.543 Sum_probs=60.3
Q ss_pred eEeecccccccccccccc---cceeeEEeeccccccccccccccccccccceeccccccchhhhH---HHHHHhcCCccc
Q 003822 128 EVLNLRSSRFRKLNMIGE---FKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWT---TIAALSKLPSLA 201 (793)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 201 (793)
+.|+|+++++..|. -|. ..+|++|||. -.||+.+.|.-|.||.+|.+|..=..+++ |+ +++|..-||+|+
T Consensus 320 ~~LdLs~N~i~~l~-~~sf~~L~~Le~LnLs-~Nsi~~l~e~af~~lssL~~LdLr~N~ls--~~IEDaa~~f~gl~~Lr 395 (873)
T KOG4194|consen 320 KELDLSSNRITRLD-EGSFRVLSQLEELNLS-HNSIDHLAEGAFVGLSSLHKLDLRSNELS--WCIEDAAVAFNGLPSLR 395 (873)
T ss_pred eeEeccccccccCC-hhHHHHHHHhhhhccc-ccchHHHHhhHHHHhhhhhhhcCcCCeEE--EEEecchhhhccchhhh
Confidence 46788888888775 233 4688999999 57999999999999999998765444433 22 788999999999
Q ss_pred ceecce
Q 003822 202 ELRFQN 207 (793)
Q Consensus 202 ~~~~~~ 207 (793)
.|||+.
T Consensus 396 kL~l~g 401 (873)
T KOG4194|consen 396 KLRLTG 401 (873)
T ss_pred heeecC
Confidence 999984
No 408
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=93.47 E-value=7 Score=44.10 Aligned_cols=229 Identities=14% Similarity=0.123 Sum_probs=99.0
Q ss_pred CeEEEEEeccCCCCCEEEEEEee----------CCCCEEEEEE-cCCcEEEEEcCCCCCcccccccCCc--eeEecCCCC
Q 003822 486 ENIVSYIPSFGAMNSVLGLCWLK----------KYPSKLIAGS-DNGSLKLYDIRHMPPSIRGMHYGAG--TVTFDEFDQ 552 (793)
Q Consensus 486 ~~~i~~l~~~~h~~~V~sv~fs~----------~~g~~Lasgs-~DgtV~vWDl~~~~~~~~~~~~~~~--~~~~~~~~~ 552 (793)
++++..+....-.+.....-|+. ...++|+..+ ..+.|.|.|+.+.....+....-.. ...-..-..
T Consensus 52 gqVIhrl~mp~~GDElHH~GWNaCSsc~~~~~~~~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~ 131 (461)
T PF05694_consen 52 GQVIHRLPMPNRGDELHHSGWNACSSCHYGDPSKERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSR 131 (461)
T ss_dssp TSEEEEEE-SSS---B---EES--GGSTT--TT--S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEE
T ss_pred ccEEEEEeCCCCCCccccccCcccccccCCCCcccCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCC
Confidence 45566555432223444444431 1345777766 7788999999865432111110000 000000011
Q ss_pred eEEEEEccCCCEEEEEE--C----CCcEEEEECCCCcEEEEEccc--CCCCeEEEEEcCCCCcEEEEEeC----------
Q 003822 553 LTSVHVNSMDELFLASG--Y----SKNIALYDINSGRRLQVFADM--HKEHINVVKFSNHSPSIFATSSF---------- 614 (793)
Q Consensus 553 V~sv~~s~~~~~lla~g--~----Dg~I~IWDl~tg~~l~~~~~g--h~~~V~sv~fspdg~~~LaTgs~---------- 614 (793)
...+..-|.++.++++- . -|.+.++|-++.+........ ....-+..-|.|.. +.++|+..
T Consensus 132 PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~-nvMiSSeWg~P~~~~~Gf 210 (461)
T PF05694_consen 132 PHTVHCLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRH-NVMISSEWGAPSMFEKGF 210 (461)
T ss_dssp EEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTT-TEEEE-B---HHHHTT--
T ss_pred CceeeecCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCC-CEEEEeccCChhhcccCC
Confidence 22333336677777762 1 256889999988888777631 23344577888876 77777542
Q ss_pred ----------CCeEEEEECCCCCccceEEccCCC-CeEEEEEe--cCCCEEEEEe-CCCeEEEEEc-CCCcEE--EEEee
Q 003822 615 ----------DQDVKLWDLRQKPIQPCYTASSSK-GNVMVCFS--PDDHYLLVSA-VDNEVRQLLA-VDGRVH--LNFGI 677 (793)
Q Consensus 615 ----------Dg~IrIWDlrt~~~~~~~~l~~~~-~~vsv~fS--pdg~~Lasgs-~Dg~I~IwDl-~tg~~~--~~l~~ 677 (793)
..++.+||+.+.+..+...+.... .+..+.|. |+..+=++|+ -..+|..|-- ..++.. ..+.+
T Consensus 211 ~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~i 290 (461)
T PF05694_consen 211 NPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDI 290 (461)
T ss_dssp -TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE
T ss_pred ChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEEC
Confidence 357999999998766666664322 23346665 5555545444 3444544433 444321 11221
Q ss_pred ecC---------C-------CCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCC
Q 003822 678 TAT---------G-------SSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTG 716 (793)
Q Consensus 678 ~~~---------~-------~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg 716 (793)
... . ..-++.+..|.|++.+.++.=.+|.+ |.||+...
T Consensus 291 p~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~Gdv-rqYDISDP 344 (461)
T PF05694_consen 291 PAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDV-RQYDISDP 344 (461)
T ss_dssp --EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEE-EEEE-SST
T ss_pred CCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcE-EEEecCCC
Confidence 110 0 13467788999999555666678899 99999764
No 409
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=93.36 E-value=0.28 Score=53.07 Aligned_cols=148 Identities=20% Similarity=0.214 Sum_probs=94.5
Q ss_pred cccCCCchhHHHHHhhcCCCcceeEEeecCCccccchHHHHHHHHHhccc--eeEEeccCCchhh--HHHHH---hhcCC
Q 003822 52 YLKDIDFQPLLEVCMQIGATEIEAVDVRSGTSCMLTGEFALSLMHAIDQK--LRVVDLHDSSFGK--DFIRN---LSQRG 124 (793)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~--~~~~~---~~~~~ 124 (793)
++.+.|...++.-+.. ++.+++. .|.++++.+..+-..+... |+.+++.++.+++ +.++. .+...
T Consensus 9 ~l~~~~~~~~~~~l~~-----L~~l~l~---~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~ 80 (319)
T cd00116 9 LLKTERATELLPKLLC-----LQVLRLE---GNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKG 80 (319)
T ss_pred cccccchHHHHHHHhh-----ccEEeec---CCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhc
Confidence 3445555555555544 5666663 4677777766666555444 9999999998883 33332 22234
Q ss_pred ceeeEeecccccccc--cccccccce---eeEEeecccccccc----ccccccccc-cccceeccccccch--hhhHHHH
Q 003822 125 LMCEVLNLRSSRFRK--LNMIGEFKR---IHTLNLDYSTSLTS----FKEDCFSCM-PNLICLSMCETRVG--NLWTTIA 192 (793)
Q Consensus 125 ~~~~~~~~~~~~~~~--~~~~~~~~~---~~~~~~~~~~~~~~----~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~ 192 (793)
-.=+.|+|+.+++.. -...+.+.+ |+.|+|..+. ++. +-.+.+..+ |+|..|.+-++.+. .+=....
T Consensus 81 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~-~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~ 159 (319)
T cd00116 81 CGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNG-LGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAK 159 (319)
T ss_pred CceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCc-cchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHH
Confidence 467788998888863 222344555 9999998654 442 112345666 99999988777765 1212345
Q ss_pred HHhcCCcccceeccee
Q 003822 193 ALSKLPSLAELRFQNW 208 (793)
Q Consensus 193 ~~~~~~~~~~~~~~~~ 208 (793)
.++.++.|++|++..|
T Consensus 160 ~~~~~~~L~~L~l~~n 175 (319)
T cd00116 160 ALRANRDLKELNLANN 175 (319)
T ss_pred HHHhCCCcCEEECcCC
Confidence 6788899999998764
No 410
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=93.08 E-value=27 Score=42.61 Aligned_cols=75 Identities=16% Similarity=0.259 Sum_probs=51.4
Q ss_pred CeEEEEEccCCCEEEEEECCCcEEEEECCC---------CcE---EEEE-------cccCCCCeEEEEEcCCC--CcEEE
Q 003822 552 QLTSVHVNSMDELFLASGYSKNIALYDINS---------GRR---LQVF-------ADMHKEHINVVKFSNHS--PSIFA 610 (793)
Q Consensus 552 ~V~sv~~s~~~~~lla~g~Dg~I~IWDl~t---------g~~---l~~~-------~~gh~~~V~sv~fspdg--~~~La 610 (793)
.|..|.+++.+..++..|..|.+.+.=.+. |+. .+++ ...+...|..+.|+|.+ +..|+
T Consensus 86 ~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l~ 165 (717)
T PF10168_consen 86 EVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHLV 165 (717)
T ss_pred eEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeEE
Confidence 488899999999998888765544332211 111 1111 11345688899999985 36888
Q ss_pred EEeCCCeEEEEECCCC
Q 003822 611 TSSFDQDVKLWDLRQK 626 (793)
Q Consensus 611 Tgs~Dg~IrIWDlrt~ 626 (793)
.-..|+++|+||+...
T Consensus 166 vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 166 VLTSDNTLRLYDISDP 181 (717)
T ss_pred EEecCCEEEEEecCCC
Confidence 8889999999999753
No 411
>PRK10115 protease 2; Provisional
Probab=92.82 E-value=29 Score=42.30 Aligned_cols=241 Identities=10% Similarity=0.046 Sum_probs=112.5
Q ss_pred cceEEEEEeCCCCCEEEEEeC-----CCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcC------Cc
Q 003822 454 FRPRQFEYHPSISCLMVFGTL-----DGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDN------GS 522 (793)
Q Consensus 454 ~~V~~vafsP~d~~~Lasgs~-----DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~D------gt 522 (793)
+.+..+.|+| ++++|+.+.. ..+|++.|+.+|..+.... ... -..++|. ++++.|+.+..+ ..
T Consensus 127 ~~l~~~~~Sp-dg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i--~~~--~~~~~w~-~D~~~~~y~~~~~~~~~~~~ 200 (686)
T PRK10115 127 YTLGGMAITP-DNTIMALAEDFLSRRQYGIRFRNLETGNWYPELL--DNV--EPSFVWA-NDSWTFYYVRKHPVTLLPYQ 200 (686)
T ss_pred EEEeEEEECC-CCCEEEEEecCCCcEEEEEEEEECCCCCCCCccc--cCc--ceEEEEe-eCCCEEEEEEecCCCCCCCE
Confidence 3477889999 8888886543 3458899998886432211 111 1468997 567655554432 35
Q ss_pred EEEEEcCCCCCcccccccCCceeEecCC-CCeE-EEEEccCCCEEEEEE---CCCcEEEEECC--CCcEEEEEcccCCCC
Q 003822 523 LKLYDIRHMPPSIRGMHYGAGTVTFDEF-DQLT-SVHVNSMDELFLASG---YSKNIALYDIN--SGRRLQVFADMHKEH 595 (793)
Q Consensus 523 V~vWDl~~~~~~~~~~~~~~~~~~~~~~-~~V~-sv~~s~~~~~lla~g---~Dg~I~IWDl~--tg~~l~~~~~gh~~~ 595 (793)
|..+++.++...- ...+... .... .+....++..++..+ .++.+.+|+.. ++.....+.. -.+.
T Consensus 201 v~~h~lgt~~~~d--------~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~ 271 (686)
T PRK10115 201 VWRHTIGTPASQD--------ELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPR-RKDH 271 (686)
T ss_pred EEEEECCCChhHC--------eEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEEC-CCCC
Confidence 7777777763211 1112111 1122 223333556555544 25789999953 3443222321 1122
Q ss_pred eEEEEEcCCCCcEEEEEeCC---CeEEEEECCC-CCccceEEccCCCCeE-EEEEecCCCEEEEEeCCCeEEE--EEcCC
Q 003822 596 INVVKFSNHSPSIFATSSFD---QDVKLWDLRQ-KPIQPCYTASSSKGNV-MVCFSPDDHYLLVSAVDNEVRQ--LLAVD 668 (793)
Q Consensus 596 V~sv~fspdg~~~LaTgs~D---g~IrIWDlrt-~~~~~~~~l~~~~~~v-sv~fSpdg~~Lasgs~Dg~I~I--wDl~t 668 (793)
...+. +..+ .+++....+ ..|...++.. +....+.. ......+ .+.+. .+..+++...+|.-++ ++..+
T Consensus 272 ~~~~~-~~~~-~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~-~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~~~~ 347 (686)
T PRK10115 272 EYSLD-HYQH-RFYLRSNRHGKNFGLYRTRVRDEQQWEELIP-PRENIMLEGFTLF-TDWLVVEERQRGLTSLRQINRKT 347 (686)
T ss_pred EEEEE-eCCC-EEEEEEcCCCCCceEEEecCCCcccCeEEEC-CCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEcCCC
Confidence 22332 3233 344433322 2344445442 22222221 1122233 36666 3344455555665444 45433
Q ss_pred CcEEEEEeeecCCCCCcEEEEEe--eCCCeEEEEEeC---CCcEEEEEEcCCCc
Q 003822 669 GRVHLNFGITATGSSQNYTRSYY--LNGRDYIVSGSC---DEHVVRICCAQTGR 717 (793)
Q Consensus 669 g~~~~~l~~~~~~~~~v~s~afs--pdg~~~L~Sgs~---Dg~II~IWDv~tg~ 717 (793)
+ .+..+.. .....+.....+ +++..++++.++ -+.+ ..+|..+++
T Consensus 348 ~-~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~-y~~d~~~~~ 397 (686)
T PRK10115 348 R-EVIGIAF--DDPAYVTWIAYNPEPETSRLRYGYSSMTTPDTL-FELDMDTGE 397 (686)
T ss_pred C-ceEEecC--CCCceEeeecccCCCCCceEEEEEecCCCCCEE-EEEECCCCc
Confidence 3 3333321 111112222233 344435544433 2456 888888775
No 412
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=92.66 E-value=0.27 Score=37.75 Aligned_cols=30 Identities=30% Similarity=0.426 Sum_probs=27.3
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCe
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENEN 487 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~ 487 (793)
|.+++|+| ..+++|.|+.+|.|.++.+ +++
T Consensus 14 v~~~~w~P-~mdLiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 14 VSCMSWCP-TMDLIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred EEEEEECC-CCCEEEEEECCCeEEEEEC-CCc
Confidence 88999999 8899999999999999998 444
No 413
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=92.56 E-value=15 Score=38.15 Aligned_cols=218 Identities=9% Similarity=0.090 Sum_probs=114.1
Q ss_pred EeCCCCCEEEEEeCCCeEEEEECCCCeEEE-EEeccCCCCCEEEEEEeeCCC--CEE-EEEEcCCcEEEEEcCCCCC-cc
Q 003822 461 YHPSISCLMVFGTLDGEIVVVNHENENIVS-YIPSFGAMNSVLGLCWLKKYP--SKL-IAGSDNGSLKLYDIRHMPP-SI 535 (793)
Q Consensus 461 fsP~d~~~Lasgs~DG~I~VWd~~t~~~i~-~l~~~~h~~~V~sv~fs~~~g--~~L-asgs~DgtV~vWDl~~~~~-~~ 535 (793)
|.-..+.++.+--..|.|.-||..+.+... .+. +. .+.++.+ |..+ +.+ +.++..-.|--||...... ..
T Consensus 22 w~~~~~sLl~VDi~ag~v~r~D~~qn~v~ra~ie--~p--~~ag~il-pv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~ 96 (310)
T KOG4499|consen 22 WDVERQSLLYVDIEAGEVHRYDIEQNKVYRAKIE--GP--PSAGFIL-PVEGGPQEFAVGCGSKFVIVNWDGVSESAKVY 96 (310)
T ss_pred eEEecceEEEEEeccCceehhhhhhhheEEEEEe--cC--cceeEEE-EecCCCceEEEeecceEEEEEcccccceeeee
Confidence 333345666666677888889988755433 222 21 1333333 3333 233 3333333345566432211 11
Q ss_pred cccccCCceeEecCCCCeEEEEEccCCCEEEEEE-CC---------CcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCC
Q 003822 536 RGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASG-YS---------KNIALYDINSGRRLQVFADMHKEHINVVKFSNHS 605 (793)
Q Consensus 536 ~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g-~D---------g~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg 605 (793)
+....... -......+.-.+.|++.+ ..|. .| |.++.|-.. ++ +..+. ..-+--+.++|+.+.
T Consensus 97 ~t~~ev~~---d~kknR~NDgkvdP~Gry-y~GtMad~~~~le~~~g~Ly~~~~~-h~-v~~i~-~~v~IsNgl~Wd~d~ 169 (310)
T KOG4499|consen 97 RTLFEVQP---DRKKNRLNDGKVDPDGRY-YGGTMADFGDDLEPIGGELYSWLAG-HQ-VELIW-NCVGISNGLAWDSDA 169 (310)
T ss_pred eeccccCc---hHHhcccccCccCCCCce-eeeeeccccccccccccEEEEeccC-CC-ceeee-hhccCCccccccccC
Confidence 11100000 001123344455566666 4443 22 223333222 11 11111 122334678999887
Q ss_pred CcEEEEEeCCCeEEEEE--CCCCC---ccceEEccCC-----CCeEEEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEE
Q 003822 606 PSIFATSSFDQDVKLWD--LRQKP---IQPCYTASSS-----KGNVMVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNF 675 (793)
Q Consensus 606 ~~~LaTgs~Dg~IrIWD--lrt~~---~~~~~~l~~~-----~~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l 675 (793)
..+.++-+.+-+|.-|| ..++. ...++.+... ..+-.++...+|...++.-..++|..+|..+|+.+.++
T Consensus 170 K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~ei 249 (310)
T KOG4499|consen 170 KKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEI 249 (310)
T ss_pred cEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEE
Confidence 66777788888898888 44432 2233333321 11112556667888777778899999999999999998
Q ss_pred eeecCCCCCcEEEEEeeC
Q 003822 676 GITATGSSQNYTRSYYLN 693 (793)
Q Consensus 676 ~~~~~~~~~v~s~afspd 693 (793)
.+. ...+.+++|--.
T Consensus 250 klP---t~qitsccFgGk 264 (310)
T KOG4499|consen 250 KLP---TPQITSCCFGGK 264 (310)
T ss_pred EcC---CCceEEEEecCC
Confidence 753 556888888654
No 414
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=92.51 E-value=18 Score=39.05 Aligned_cols=212 Identities=12% Similarity=0.126 Sum_probs=113.7
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECC------CC-eEEEEEeccC---CCCCEEEEEEeeCC-----------CCEE
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHE------NE-NIVSYIPSFG---AMNSVLGLCWLKKY-----------PSKL 514 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~------t~-~~i~~l~~~~---h~~~V~sv~fs~~~-----------g~~L 514 (793)
.+-|+++| .+.+.++....+...+||.+ .. ..+..++... .....+.+.|+... ...+
T Consensus 25 ~WGia~~p-~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 25 AWGLSYRP-GGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred cceeEecC-CCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 67899999 77888888888999999986 12 2333443211 23467777775211 1246
Q ss_pred EEEEcCCcEEEEEcCCCCCcccccccCCceeEecC--CCC-eEEEEEc--cCCCEEEEEE-CCCcEEEEECCCCcEEEEE
Q 003822 515 IAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDE--FDQ-LTSVHVN--SMDELFLASG-YSKNIALYDINSGRRLQVF 588 (793)
Q Consensus 515 asgs~DgtV~vWDl~~~~~~~~~~~~~~~~~~~~~--~~~-V~sv~~s--~~~~~lla~g-~Dg~I~IWDl~tg~~l~~~ 588 (793)
+.+++||+|.-|...-....+.. ..+.+.. ... -..+++. ..+..+.++- ..++|.++|-.-.+.. +
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~-----~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~--~ 176 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTR-----AEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPP--L 176 (336)
T ss_pred EEEeCCceEEeecCcCCcccccc-----cEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCcccccc--C
Confidence 78899999999986443220000 0111110 011 2344443 3356666665 4799999986633221 1
Q ss_pred cccCCCCeEEEEEcCC-----CCcEEEE-------------EeCCCeEEEEECCCCCccceEEccC-CCCeEEEEEec--
Q 003822 589 ADMHKEHINVVKFSNH-----SPSIFAT-------------SSFDQDVKLWDLRQKPIQPCYTASS-SKGNVMVCFSP-- 647 (793)
Q Consensus 589 ~~gh~~~V~sv~fspd-----g~~~LaT-------------gs~Dg~IrIWDlrt~~~~~~~~l~~-~~~~vsv~fSp-- 647 (793)
.....++-.-.-|.|- +.+++++ |..-|.|-+||+...-.+ .+...+ -..+.-++..|
T Consensus 177 ~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~l~~-r~as~g~LNaPWG~a~APa~ 255 (336)
T TIGR03118 177 PGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQLLR-RVASSGRLNAPWGLAIAPES 255 (336)
T ss_pred CCCccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCCcEEE-EeccCCcccCCceeeeChhh
Confidence 1011111000011110 1123332 333468999998764222 121111 11222355544
Q ss_pred ----CCCEEEEEeCCCeEEEEEcCCCcEEEEEe
Q 003822 648 ----DDHYLLVSAVDNEVRQLLAVDGRVHLNFG 676 (793)
Q Consensus 648 ----dg~~Lasgs~Dg~I~IwDl~tg~~~~~l~ 676 (793)
.|..|+---.||+|..||..+|+.+-.+.
T Consensus 256 FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~ 288 (336)
T TIGR03118 256 FGSLSGALLVGNFGDGTINAYDPQSGAQLGQLL 288 (336)
T ss_pred hCCCCCCeEEeecCCceeEEecCCCCceeeeec
Confidence 45655555579999999999998776664
No 415
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=92.38 E-value=0.44 Score=48.72 Aligned_cols=141 Identities=13% Similarity=0.142 Sum_probs=76.2
Q ss_pred EEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcccccccCCceeEecC
Q 003822 470 VFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDE 549 (793)
Q Consensus 470 asgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~~~~~~~~~~~~~~~ 549 (793)
..-+.||.|+-+++...+....-. .-|... ..+. .-+..++.|+.+|.|.+|......... ..+....
T Consensus 34 ~~~sa~~~v~~~~~~k~k~s~rse-~~~~e~-~~v~---~~~~~~~vG~~dg~v~~~n~n~~g~~~-------d~~~s~~ 101 (238)
T KOG2444|consen 34 RATSADGLVRERKVRKHKESCRSE-RFIDEG-QRVV---TASAKLMVGTSDGAVYVFNWNLEGAHS-------DRVCSGE 101 (238)
T ss_pred ccccCCcccccchhhhhhhhhhhh-hhhhcc-eeec---ccCceEEeecccceEEEecCCccchHH-------Hhhhccc
Confidence 334457777777765433211110 011122 2221 345689999999999999987322211 1111111
Q ss_pred CCCeEE-EEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCC-CCeEEEEEcCCCCcEEEEE--eCCCeEEEEECCC
Q 003822 550 FDQLTS-VHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHK-EHINVVKFSNHSPSIFATS--SFDQDVKLWDLRQ 625 (793)
Q Consensus 550 ~~~V~s-v~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~-~~V~sv~fspdg~~~LaTg--s~Dg~IrIWDlrt 625 (793)
..|.+ +..-..+....+++.+|.|+.|++.-++.+.... .|+ .++.....+..+ .+++.+ |.|..++.|++..
T Consensus 102 -e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g-~h~~~~~e~~ivv~sd-~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 102 -ESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVG-QHNFESGEELIVVGSD-EFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred -ccceeccccccccceeEEeccCCceeeeccccCceeeeec-cccCCCcceeEEecCC-ceEEeeccccchhhhhcchhh
Confidence 12222 2221233466667789999999999888777665 466 444444444333 455555 6666667776654
No 416
>PRK13616 lipoprotein LpqB; Provisional
Probab=92.37 E-value=9.9 Score=45.34 Aligned_cols=156 Identities=9% Similarity=0.023 Sum_probs=82.6
Q ss_pred eEEEEEeCCCCCEEEEEe------CCC--eEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCc-EEEE
Q 003822 456 PRQFEYHPSISCLMVFGT------LDG--EIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGS-LKLY 526 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs------~DG--~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~Dgt-V~vW 526 (793)
+...+++| +++.+|... .|+ .|.+++.. +.. ..+.. +. ..+.-.|+ ++|..+++...... +++.
T Consensus 352 vsspaiSp-dG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~-g~--~~t~PsWs-pDG~~lw~v~dg~~~~~v~ 424 (591)
T PRK13616 352 ITSAALSR-SGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLE-GH--SLTRPSWS-LDADAVWVVVDGNTVVRVI 424 (591)
T ss_pred cccceECC-CCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeec-CC--CCCCceEC-CCCCceEEEecCcceEEEe
Confidence 77899999 777777655 244 45555542 222 33321 32 37778887 67777777653312 2222
Q ss_pred EcCCC-CCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEE---EECCCCcE-E---EEEcccCCCCeEE
Q 003822 527 DIRHM-PPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIAL---YDINSGRR-L---QVFADMHKEHINV 598 (793)
Q Consensus 527 Dl~~~-~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~I---WDl~tg~~-l---~~~~~gh~~~V~s 598 (793)
+-... +.......... ........|..+.|+|++..++... +|.|++ -....|.. + ..+..+-...+..
T Consensus 425 ~~~~~gql~~~~vd~ge--~~~~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~ 501 (591)
T PRK13616 425 RDPATGQLARTPVDASA--VASRVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVS 501 (591)
T ss_pred ccCCCceEEEEeccCch--hhhccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCcccc
Confidence 22111 11000010000 0002235699999999999888776 467776 44344541 1 1122123344688
Q ss_pred EEEcCCCCcEEEEEeCCCeEEEEEC
Q 003822 599 VKFSNHSPSIFATSSFDQDVKLWDL 623 (793)
Q Consensus 599 v~fspdg~~~LaTgs~Dg~IrIWDl 623 (793)
+.|.+++ .+ +++..++...+|-+
T Consensus 502 l~W~~~~-~L-~V~~~~~~~~v~~v 524 (591)
T PRK13616 502 LDWRTGD-SL-VVGRSDPEHPVWYV 524 (591)
T ss_pred ceEecCC-EE-EEEecCCCCceEEE
Confidence 9999988 54 45555544445543
No 417
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=92.13 E-value=20 Score=38.71 Aligned_cols=219 Identities=13% Similarity=0.117 Sum_probs=122.4
Q ss_pred CEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCC------CcccccccCCceeEecCCCCeEEEEEccCCC----------
Q 003822 500 SVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMP------PSIRGMHYGAGTVTFDEFDQLTSVHVNSMDE---------- 563 (793)
Q Consensus 500 ~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~------~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~---------- 563 (793)
.-+.|+++ +.+.+-++...-+...+||..... .....+..... .......+.+.|+....
T Consensus 24 N~WGia~~-p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~---~~~~~~PTGiVfN~~~~F~vt~~g~~~ 99 (336)
T TIGR03118 24 NAWGLSYR-PGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPP---LAAEGTPTGQVFNGSDTFVVSGEGITG 99 (336)
T ss_pred ccceeEec-CCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCC---CCCCCCccEEEEeCCCceEEcCCCccc
Confidence 35678887 556666666667889999987221 11111110000 01123466676664332
Q ss_pred --EEEEEECCCcEEEEECCCCcE-----EEEEcccCCCCeE-EEEEcCC--CCcEEEEEeCCCeEEEEECCCCCccc--e
Q 003822 564 --LFLASGYSKNIALYDINSGRR-----LQVFADMHKEHIN-VVKFSNH--SPSIFATSSFDQDVKLWDLRQKPIQP--C 631 (793)
Q Consensus 564 --~lla~g~Dg~I~IWDl~tg~~-----l~~~~~gh~~~V~-sv~fspd--g~~~LaTgs~Dg~IrIWDlrt~~~~~--~ 631 (793)
.++.++.||+|.-|...-+.. ...+.....+.|+ .+++... +..+.++--..++|.|||-.-.+... .
T Consensus 100 ~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~ 179 (336)
T TIGR03118 100 PSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGS 179 (336)
T ss_pred ceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCC
Confidence 367788899999998543222 2223322234454 4555433 43455555568999999865432110 0
Q ss_pred EE---ccCCCCe---------EEEEEe---cCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEee----
Q 003822 632 YT---ASSSKGN---------VMVCFS---PDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYL---- 692 (793)
Q Consensus 632 ~~---l~~~~~~---------vsv~fS---pdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afsp---- 692 (793)
+. ++..-.+ +-|.|. ++++.=+.|..-|.|-+||+ +|++++++.. ...-...+.++..|
T Consensus 180 F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as-~g~LNaPWG~a~APa~FG 257 (336)
T TIGR03118 180 FIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVAS-SGRLNAPWGLAIAPESFG 257 (336)
T ss_pred ccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEecc-CCcccCCceeeeChhhhC
Confidence 00 0110011 112222 23333334445578999995 5888888742 22334567777654
Q ss_pred --CCCeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCC
Q 003822 693 --NGRDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKG 728 (793)
Q Consensus 693 --dg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~ 728 (793)
.|. +|+.--.||+| ..+|..+|+.+. .|.+..
T Consensus 258 ~~sg~-lLVGNFGDG~I-naFD~~sG~~~g--~L~~~~ 291 (336)
T TIGR03118 258 SLSGA-LLVGNFGDGTI-NAYDPQSGAQLG--QLLDPD 291 (336)
T ss_pred CCCCC-eEEeecCCcee-EEecCCCCceee--eecCCC
Confidence 455 67766679999 999999999998 777655
No 418
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=91.93 E-value=4.3 Score=48.24 Aligned_cols=112 Identities=14% Similarity=0.161 Sum_probs=72.1
Q ss_pred EEEEEcCCCCcEEEEEeCCCeEEEEECCCCCccceEEccCCCCeEEEEEe--cCCCEEEEEeCCCeEEEEEcC-------
Q 003822 597 NVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFS--PDDHYLLVSAVDNEVRQLLAV------- 667 (793)
Q Consensus 597 ~sv~fspdg~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~~~~vsv~fS--pdg~~Lasgs~Dg~I~IwDl~------- 667 (793)
.-+.-+.-+ +..++.+....+.|||.+.+.......+..+..+..+.|. |+|+.+++.+-.+.|.+|--.
T Consensus 33 ~li~gss~~-k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~ 111 (631)
T PF12234_consen 33 SLISGSSIK-KIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNK 111 (631)
T ss_pred ceEeecccC-cEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcC
Confidence 334444433 3333334445699999998864444455455566667775 789999999989999888531
Q ss_pred --CCcEEEEEeeecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEc
Q 003822 668 --DGRVHLNFGITATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCA 713 (793)
Q Consensus 668 --tg~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv 713 (793)
+...+..+.+.......+....|-++|. ++.|+.. .+ .|+|-
T Consensus 112 ~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~--LvV~sGN-ql-fv~dk 155 (631)
T PF12234_consen 112 GPSWAPIRKIDISSHTPHPIGDSIWLKDGT--LVVGSGN-QL-FVFDK 155 (631)
T ss_pred CcccceeEEEEeecCCCCCccceeEecCCe--EEEEeCC-EE-EEECC
Confidence 2345666666544446788899999995 5555433 45 77764
No 419
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=91.88 E-value=9.3 Score=43.16 Aligned_cols=219 Identities=11% Similarity=0.080 Sum_probs=99.1
Q ss_pred CCEEEEEE-CCCcEEEEECCC----CcEEEEEcc--cCC----CCeEEEEEcCCCCcEEEEEeC--C----CeEEEEECC
Q 003822 562 DELFLASG-YSKNIALYDINS----GRRLQVFAD--MHK----EHINVVKFSNHSPSIFATSSF--D----QDVKLWDLR 624 (793)
Q Consensus 562 ~~~lla~g-~Dg~I~IWDl~t----g~~l~~~~~--gh~----~~V~sv~fspdg~~~LaTgs~--D----g~IrIWDlr 624 (793)
-+++++.+ .++.|+|.|+.+ .+..+++.. .+. .....+..-|+| .+++++-. + |-+.+.|-.
T Consensus 87 Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G-~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 87 RRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDG-RIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS---EEEEEEEETTS-S--EEEEE-TT
T ss_pred CCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCc-cEEEEeccCCCCCCCCcEEEEcCc
Confidence 45777777 579999999984 344555541 011 223345556777 67776432 2 447888877
Q ss_pred CCCccceEEccCCCCeE--EEEEecCCCEEEEEe--------------------CCCeEEEEEcCCCcEEEEEeeecCCC
Q 003822 625 QKPIQPCYTASSSKGNV--MVCFSPDDHYLLVSA--------------------VDNEVRQLLAVDGRVHLNFGITATGS 682 (793)
Q Consensus 625 t~~~~~~~~l~~~~~~v--sv~fSpdg~~Lasgs--------------------~Dg~I~IwDl~tg~~~~~l~~~~~~~ 682 (793)
+................ .+-|.|..+.+++.. ...++.+||..+.+.++++..... +
T Consensus 166 tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~-g 244 (461)
T PF05694_consen 166 TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEE-G 244 (461)
T ss_dssp T--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TT-E
T ss_pred cccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCC-C
Confidence 76444444333222222 478888888888764 235899999999999999985332 2
Q ss_pred CCcEEEEEe--eCCCeEEEEEeCCCcEEEEEEcCCCcEEE--eeeecCCCCCccceeeeccCCccccCCccEEEEEEcCC
Q 003822 683 SQNYTRSYY--LNGRDYIVSGSCDEHVVRICCAQTGRRLR--DISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPS 758 (793)
Q Consensus 683 ~~v~s~afs--pdg~~~L~Sgs~Dg~II~IWDv~tg~~l~--~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~ 758 (793)
..+..+.|. |+...-++.+.-.++|.++|....|+=-. .+.+.... ...+.-.--..+|..-..-|+.+.-+.+
T Consensus 245 ~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~--v~~~~lp~ml~~~~~~P~LitDI~iSlD 322 (461)
T PF05694_consen 245 QMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKK--VEGWILPEMLKPFGAVPPLITDILISLD 322 (461)
T ss_dssp EEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE----SS---GGGGGG-EE------EEE-TT
T ss_pred CceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcc--cCcccccccccccccCCCceEeEEEccC
Confidence 234555554 44443344444556664555444443211 11221111 0001000000011111235778888887
Q ss_pred CCceeeEeeEEEeCCCcEEEEcCCCCCCCC
Q 003822 759 SKSEIVKVNLLASTDHCDKECSHGQHSRPS 788 (793)
Q Consensus 759 ~~~~iv~~~ltaS~Dg~VkvW~~~~~~~~~ 788 (793)
.+...+ +.-.+|.||.++......|.
T Consensus 323 DrfLYv----s~W~~GdvrqYDISDP~~Pk 348 (461)
T PF05694_consen 323 DRFLYV----SNWLHGDVRQYDISDPFNPK 348 (461)
T ss_dssp S-EEEE----EETTTTEEEEEE-SSTTS-E
T ss_pred CCEEEE----EcccCCcEEEEecCCCCCCc
Confidence 665544 55679999999987776553
No 420
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.83 E-value=21 Score=38.31 Aligned_cols=175 Identities=11% Similarity=0.097 Sum_probs=107.8
Q ss_pred CCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEECCCCCcc-
Q 003822 551 DQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQ- 629 (793)
Q Consensus 551 ~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~Dg~IrIWDlrt~~~~- 629 (793)
..+.++.|+|+.+.+++..+...-.||=...|+.+.++.-..-...-.|+|..++ ++.++--.++.+.++.+......
T Consensus 86 ~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n-~fvi~dER~~~l~~~~vd~~t~~~ 164 (316)
T COG3204 86 ANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGN-QFVIVDERDRALYLFTVDADTTVI 164 (316)
T ss_pred ccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCC-EEEEEehhcceEEEEEEcCCccEE
Confidence 4489999999999999999888888887778999998873223345678888776 66666667888888876654111
Q ss_pred ----ceEEccC----CCCeEEEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCC-------CCCcEEEEEeeCC
Q 003822 630 ----PCYTASS----SKGNVMVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATG-------SSQNYTRSYYLNG 694 (793)
Q Consensus 630 ----~~~~l~~----~~~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~-------~~~v~s~afspdg 694 (793)
..+.+.. ..+.-.++|+|..+.++.+-.-+-+.||....+............ -..+..+.|.+..
T Consensus 165 ~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~ 244 (316)
T COG3204 165 SAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAIT 244 (316)
T ss_pred eccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecCCC
Confidence 1122211 222235999999999999888777777766533211111110011 1234456677665
Q ss_pred CeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCC
Q 003822 695 RDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKG 728 (793)
Q Consensus 695 ~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~ 728 (793)
..+++-+-+++.+ .-.|. +|+.+..+.+.+..
T Consensus 245 ~~LLVLS~ESr~l-~Evd~-~G~~~~~lsL~~g~ 276 (316)
T COG3204 245 NSLLVLSDESRRL-LEVDL-SGEVIELLSLTKGN 276 (316)
T ss_pred CcEEEEecCCceE-EEEec-CCCeeeeEEeccCC
Confidence 5355555555544 44444 45556644555443
No 421
>PHA03098 kelch-like protein; Provisional
Probab=91.71 E-value=5.5 Score=46.82 Aligned_cols=149 Identities=9% Similarity=0.084 Sum_probs=72.7
Q ss_pred CCCEEEEEECC-----CcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeCC------CeEEEEECCCCCcc
Q 003822 561 MDELFLASGYS-----KNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFD------QDVKLWDLRQKPIQ 629 (793)
Q Consensus 561 ~~~~lla~g~D-----g~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~D------g~IrIWDlrt~~~~ 629 (793)
++..++.||.+ ..+..||..+.+-...-.-.+...-.+++. -++ .+++.|+.+ ..+..||..+.+..
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~-~~~-~iYv~GG~~~~~~~~~~v~~yd~~t~~W~ 419 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVN-VNN-LIYVIGGISKNDELLKTVECFSLNTNKWS 419 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEE-ECC-EEEEECCcCCCCcccceEEEEeCCCCeee
Confidence 45566666644 457788888765332111001111112222 244 677777742 35889998876443
Q ss_pred ceEEccCCCCeEEEEEecCCCEEEEEeCC--------CeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCCCeEEEEE
Q 003822 630 PCYTASSSKGNVMVCFSPDDHYLLVSAVD--------NEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNGRDYIVSG 701 (793)
Q Consensus 630 ~~~~l~~~~~~vsv~fSpdg~~Lasgs~D--------g~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sg 701 (793)
.....+......+ +...+++..+.|+.+ ..+.+||..+++....-. .+..... ..+...++. +++.|
T Consensus 420 ~~~~~p~~r~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~-~~~~r~~--~~~~~~~~~-iyv~G 494 (534)
T PHA03098 420 KGSPLPISHYGGC-AIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSS-LNFPRIN--ASLCIFNNK-IYVVG 494 (534)
T ss_pred ecCCCCccccCce-EEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCC-CCccccc--ceEEEECCE-EEEEc
Confidence 3322221111112 222356666666542 238889988776532211 1111111 112223565 55666
Q ss_pred eCC-----CcEEEEEEcCCCc
Q 003822 702 SCD-----EHVVRICCAQTGR 717 (793)
Q Consensus 702 s~D-----g~II~IWDv~tg~ 717 (793)
|.+ ..+ .+||..+.+
T Consensus 495 G~~~~~~~~~v-~~yd~~~~~ 514 (534)
T PHA03098 495 GDKYEYYINEI-EVYDDKTNT 514 (534)
T ss_pred CCcCCccccee-EEEeCCCCE
Confidence 554 345 778776653
No 422
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=91.22 E-value=29 Score=38.79 Aligned_cols=149 Identities=15% Similarity=0.126 Sum_probs=77.6
Q ss_pred eEEEEEeCCCCCEEEEEe-----------CCC-eEEEEECCC--CeE--EEEEeccCCCCCEEEEEEeeCCCCEEEEEEc
Q 003822 456 PRQFEYHPSISCLMVFGT-----------LDG-EIVVVNHEN--ENI--VSYIPSFGAMNSVLGLCWLKKYPSKLIAGSD 519 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs-----------~DG-~I~VWd~~t--~~~--i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~ 519 (793)
+..|+|.+ +++++++-. ..+ .|.+++-.+ |+. ...+. ..-.....+++. +++ + +++..
T Consensus 16 P~~ia~d~-~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa--~~l~~p~Gi~~~-~~G-l-yV~~~ 89 (367)
T TIGR02604 16 PIAVCFDE-RGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFA--EELSMVTGLAVA-VGG-V-YVATP 89 (367)
T ss_pred CceeeECC-CCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEee--cCCCCccceeEe-cCC-E-EEeCC
Confidence 88999999 888777653 223 777776432 332 22222 223456788886 566 4 44444
Q ss_pred CCcEEEEEcCCCCCc---cccc-ccCCceeEecCCCCeEEEEEccCCCEEEEEECC-------------------CcEEE
Q 003822 520 NGSLKLYDIRHMPPS---IRGM-HYGAGTVTFDEFDQLTSVHVNSMDELFLASGYS-------------------KNIAL 576 (793)
Q Consensus 520 DgtV~vWDl~~~~~~---~~~~-~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~D-------------------g~I~I 576 (793)
....++.|....... ...+ ...... ...+......+.+.|++..+++.+.. |.|.-
T Consensus 90 ~~i~~~~d~~gdg~ad~~~~~l~~~~~~~-~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r 168 (367)
T TIGR02604 90 PDILFLRDKDGDDKADGEREVLLSGFGGQ-INNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFR 168 (367)
T ss_pred CeEEEEeCCCCCCCCCCccEEEEEccCCC-CCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEE
Confidence 433333344321110 0000 000000 00012446788888877766665521 34555
Q ss_pred EECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeC
Q 003822 577 YDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSF 614 (793)
Q Consensus 577 WDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~ 614 (793)
+|..+++ ...+..++ .....++|+|+| .++++-..
T Consensus 169 ~~pdg~~-~e~~a~G~-rnp~Gl~~d~~G-~l~~tdn~ 203 (367)
T TIGR02604 169 YNPDGGK-LRVVAHGF-QNPYGHSVDSWG-DVFFCDND 203 (367)
T ss_pred EecCCCe-EEEEecCc-CCCccceECCCC-CEEEEccC
Confidence 5655444 33343333 345789999998 67766443
No 423
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=90.88 E-value=6 Score=40.84 Aligned_cols=112 Identities=16% Similarity=0.174 Sum_probs=66.2
Q ss_pred CEEEEEEeeCCCC-EEEEEEcCCcEEEEE--cCCCCCccc-ccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEE
Q 003822 500 SVLGLCWLKKYPS-KLIAGSDNGSLKLYD--IRHMPPSIR-GMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIA 575 (793)
Q Consensus 500 ~V~sv~fs~~~g~-~Lasgs~DgtV~vWD--l~~~~~~~~-~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~ 575 (793)
--..++|. .+.+ +.++-+.+-+|.-|| ..++...-+ .+........+.+ -..-.+++...+..++++-+.++|.
T Consensus 159 IsNgl~Wd-~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~-~~PDGm~ID~eG~L~Va~~ng~~V~ 236 (310)
T KOG4499|consen 159 ISNGLAWD-SDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFES-LEPDGMTIDTEGNLYVATFNGGTVQ 236 (310)
T ss_pred CCcccccc-ccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCC-CCCCcceEccCCcEEEEEecCcEEE
Confidence 34568887 4444 445567788888888 455443111 0000000011111 1123444544566666666789999
Q ss_pred EEECCCCcEEEEEcccCCCCeEEEEEcCCCC-cEEEEEeC
Q 003822 576 LYDINSGRRLQVFADMHKEHINVVKFSNHSP-SIFATSSF 614 (793)
Q Consensus 576 IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~-~~LaTgs~ 614 (793)
..|..+|+.+..++ -....|++++|--..- .+.+|+..
T Consensus 237 ~~dp~tGK~L~eik-lPt~qitsccFgGkn~d~~yvT~aa 275 (310)
T KOG4499|consen 237 KVDPTTGKILLEIK-LPTPQITSCCFGGKNLDILYVTTAA 275 (310)
T ss_pred EECCCCCcEEEEEE-cCCCceEEEEecCCCccEEEEEehh
Confidence 99999999999998 4688999999964321 34444443
No 424
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=90.74 E-value=16 Score=41.46 Aligned_cols=92 Identities=12% Similarity=0.057 Sum_probs=59.0
Q ss_pred CCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCCCCccceeeeccCCccccCCccEEEEEEcCCC--C
Q 003822 683 SQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSS--K 760 (793)
Q Consensus 683 ~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~--~ 760 (793)
....+++.+|+++ +.++...=|+| .++|+.++..++ ..+|-......|++....... +. .-...+.. +
T Consensus 308 R~~~~i~~sP~~~-laA~tDslGRV-~LiD~~~~~vvr--mWKGYRdAqc~wi~~~~~~~~--~~----~~~~~~~~~~~ 377 (415)
T PF14655_consen 308 REGESICLSPSGR-LAAVTDSLGRV-LLIDVARGIVVR--MWKGYRDAQCGWIEVPEEGDR--DR----SNSNSPKSSSR 377 (415)
T ss_pred ceEEEEEECCCCC-EEEEEcCCCcE-EEEECCCChhhh--hhccCccceEEEEEeeccccc--cc----ccccccCCCCc
Confidence 4566778899987 77776666899 999999999999 889988666667776543321 00 00011101 1
Q ss_pred ceeeEeeEEEeCCCcEEEEcCCCCC
Q 003822 761 SEIVKVNLLASTDHCDKECSHGQHS 785 (793)
Q Consensus 761 ~~iv~~~ltaS~Dg~VkvW~~~~~~ 785 (793)
..++ ..+-+-.-|.|.||......
T Consensus 378 ~~l~-LvIyaprRg~lEvW~~~~g~ 401 (415)
T PF14655_consen 378 FALF-LVIYAPRRGILEVWSMRQGP 401 (415)
T ss_pred ceEE-EEEEeccCCeEEEEecCCCC
Confidence 1122 33346678889999987654
No 425
>PHA02790 Kelch-like protein; Provisional
Probab=90.65 E-value=9.9 Score=44.19 Aligned_cols=145 Identities=7% Similarity=0.066 Sum_probs=70.7
Q ss_pred CCCEEEEEECC--CcEEEEECCCCcEEEEEcccCCC-CeEEEEEcCCCCcEEEEEeCCC---eEEEEECCCCCccceEEc
Q 003822 561 MDELFLASGYS--KNIALYDINSGRRLQVFADMHKE-HINVVKFSNHSPSIFATSSFDQ---DVKLWDLRQKPIQPCYTA 634 (793)
Q Consensus 561 ~~~~lla~g~D--g~I~IWDl~tg~~l~~~~~gh~~-~V~sv~fspdg~~~LaTgs~Dg---~IrIWDlrt~~~~~~~~l 634 (793)
++..+++||.+ ..+..||..+++....-.-.+.. ....+.. +| .+.+.|+.++ .+..||.++.........
T Consensus 318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~--~g-~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m 394 (480)
T PHA02790 318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASI--NN-VIYVIGGHSETDTTTEYLLPNHDQWQFGPST 394 (480)
T ss_pred CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEE--CC-EEEEecCcCCCCccEEEEeCCCCEEEeCCCC
Confidence 45555666643 56888998765433211100111 1122222 45 7888888654 477899887644332222
Q ss_pred cCCCCeEEEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCCCeEEEEEeCC-----CcEEE
Q 003822 635 SSSKGNVMVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNGRDYIVSGSCD-----EHVVR 709 (793)
Q Consensus 635 ~~~~~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~D-----g~II~ 709 (793)
+......+ +..-+|+..+.| |.+.+||..+++....-.. ... .....+...+|+ +.+.||.+ ..+ .
T Consensus 395 ~~~r~~~~-~~~~~~~IYv~G---G~~e~ydp~~~~W~~~~~m--~~~-r~~~~~~v~~~~-IYviGG~~~~~~~~~v-e 465 (480)
T PHA02790 395 YYPHYKSC-ALVFGRRLFLVG---RNAEFYCESSNTWTLIDDP--IYP-RDNPELIIVDNK-LLLIGGFYRGSYIDTI-E 465 (480)
T ss_pred CCccccce-EEEECCEEEEEC---CceEEecCCCCcEeEcCCC--CCC-ccccEEEEECCE-EEEECCcCCCcccceE-E
Confidence 21111112 223355555555 3567899887665322111 111 111222344666 66666644 245 7
Q ss_pred EEEcCCCc
Q 003822 710 ICCAQTGR 717 (793)
Q Consensus 710 IWDv~tg~ 717 (793)
.||..+++
T Consensus 466 ~Yd~~~~~ 473 (480)
T PHA02790 466 VYNNRTYS 473 (480)
T ss_pred EEECCCCe
Confidence 77776653
No 426
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=90.37 E-value=3.3 Score=49.69 Aligned_cols=114 Identities=14% Similarity=0.181 Sum_probs=70.7
Q ss_pred CCCEEEEEEcCCcEEEEEcCCCCCccccc----------ccCCceeEecCCCCeEEEEEc--cCCCEEEEEECCCcEEEE
Q 003822 510 YPSKLIAGSDNGSLKLYDIRHMPPSIRGM----------HYGAGTVTFDEFDQLTSVHVN--SMDELFLASGYSKNIALY 577 (793)
Q Consensus 510 ~g~~Lasgs~DgtV~vWDl~~~~~~~~~~----------~~~~~~~~~~~~~~V~sv~~s--~~~~~lla~g~Dg~I~IW 577 (793)
+...|+.+..||.|.+|.+++-...+... ........+.....+++++++ .....++++++...|.||
T Consensus 113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVF 192 (717)
T PF08728_consen 113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVF 192 (717)
T ss_pred CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEE
Confidence 44688999999999999875311000000 001122344455679999997 555666666667778777
Q ss_pred ECCCC--cEEEEEcccCCCCeEEEEEcCCC--Cc---EEEEEeCCCeEEEEEC
Q 003822 578 DINSG--RRLQVFADMHKEHINVVKFSNHS--PS---IFATSSFDQDVKLWDL 623 (793)
Q Consensus 578 Dl~tg--~~l~~~~~gh~~~V~sv~fspdg--~~---~LaTgs~Dg~IrIWDl 623 (793)
-.... +....-...|...|.+|+|.++. +. .+++++-.|.+.+|++
T Consensus 193 af~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 193 AFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 55431 21111011266678899998754 22 7888889999988887
No 427
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=90.34 E-value=14 Score=39.01 Aligned_cols=151 Identities=13% Similarity=0.059 Sum_probs=86.7
Q ss_pred CeEEEEEccCCCEEEEEE-CC--CcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEE-CCCCC
Q 003822 552 QLTSVHVNSMDELFLASG-YS--KNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWD-LRQKP 627 (793)
Q Consensus 552 ~V~sv~~s~~~~~lla~g-~D--g~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~Dg~IrIWD-lrt~~ 627 (793)
.+.+.++++++..+++.. .+ ..++++. .+....... ....+..-.|++++ .+.+....+...+++. ...+.
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~--~~~~~~~~~--~g~~l~~PS~d~~g-~~W~v~~~~~~~~~~~~~~~g~ 99 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGP--AGGPVRPVL--TGGSLTRPSWDPDG-WVWTVDDGSGGVRVVRDSASGT 99 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEc--CCCcceeec--cCCccccccccCCC-CEEEEEcCCCceEEEEecCCCc
Confidence 577888988888887776 23 4455554 443333332 12367788999997 6666666666666663 33333
Q ss_pred ccceEE-ccCCC-CeEEEEEecCCCEEEEEe---CCCeEEEEEcC---CC---cEEEEEeeecCCCCCcEEEEEeeCCCe
Q 003822 628 IQPCYT-ASSSK-GNVMVCFSPDDHYLLVSA---VDNEVRQLLAV---DG---RVHLNFGITATGSSQNYTRSYYLNGRD 696 (793)
Q Consensus 628 ~~~~~~-l~~~~-~~vsv~fSpdg~~Lasgs---~Dg~I~IwDl~---tg---~~~~~l~~~~~~~~~v~s~afspdg~~ 696 (793)
..++.. ..... .+..+.+||||..++... .++.|.+=-+. .+ .+.............+..++|.+++.-
T Consensus 100 ~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L 179 (253)
T PF10647_consen 100 GEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTL 179 (253)
T ss_pred ceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEE
Confidence 222221 22222 455699999999988766 34666665432 23 111122222233457789999999983
Q ss_pred EEEEEeCCCcE
Q 003822 697 YIVSGSCDEHV 707 (793)
Q Consensus 697 ~L~Sgs~Dg~I 707 (793)
.+++...++.+
T Consensus 180 ~V~~~~~~~~~ 190 (253)
T PF10647_consen 180 VVLGRSAGGPV 190 (253)
T ss_pred EEEeCCCCCce
Confidence 33333444434
No 428
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=89.90 E-value=0.26 Score=62.39 Aligned_cols=60 Identities=17% Similarity=0.267 Sum_probs=24.6
Q ss_pred cccceeeEEeeccccccccccccccccccccceeccccccchhhhHHHHHHhcCCcccceecc
Q 003822 144 GEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELRFQ 206 (793)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (793)
|.+.+|.+|+|.++ .++..-.+.|..|++|..|++=..++.. ....++.+|++|++|...
T Consensus 161 ~~l~~L~~L~L~~n-~l~~~~p~~~~~l~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~L~ 220 (968)
T PLN00113 161 GSFSSLKVLDLGGN-VLVGKIPNSLTNLTSLEFLTLASNQLVG--QIPRELGQMKSLKWIYLG 220 (968)
T ss_pred hcCCCCCEEECccC-cccccCChhhhhCcCCCeeeccCCCCcC--cCChHHcCcCCccEEECc
Confidence 44444555555432 2222223344445555554443322211 012344455555555443
No 429
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=89.17 E-value=8.5 Score=45.80 Aligned_cols=101 Identities=13% Similarity=0.089 Sum_probs=63.4
Q ss_pred CEEEEEE-CCCcEEEEECCCCcEEEEEcccCCCCeEEEEEc--CCCCcEEEEEeCCCeEEEEECC-----C--CCccceE
Q 003822 563 ELFLASG-YSKNIALYDINSGRRLQVFADMHKEHINVVKFS--NHSPSIFATSSFDQDVKLWDLR-----Q--KPIQPCY 632 (793)
Q Consensus 563 ~~lla~g-~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fs--pdg~~~LaTgs~Dg~IrIWDlr-----t--~~~~~~~ 632 (793)
+.++... ....+.|||.+.+.....-.-...+.|.++.|. |++ +.+++.+..+.|.+|--. . +...++.
T Consensus 41 ~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~-qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~ 119 (631)
T PF12234_consen 41 KKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDG-QSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIR 119 (631)
T ss_pred CcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCC-CEEEEEEcCcEEEEEEccchhhhcCCcccceeE
Confidence 4444444 457899999998875544332357899999885 677 677777788889888542 1 1111222
Q ss_pred --EccCCC--CeEEEEEecCCCEEEEEeCCCeEEEEEc
Q 003822 633 --TASSSK--GNVMVCFSPDDHYLLVSAVDNEVRQLLA 666 (793)
Q Consensus 633 --~l~~~~--~~vsv~fSpdg~~Lasgs~Dg~I~IwDl 666 (793)
.+..++ .+....|.++|..++.+ ++.+.|+|-
T Consensus 120 ~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk 155 (631)
T PF12234_consen 120 KIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDK 155 (631)
T ss_pred EEEeecCCCCCccceeEecCCeEEEEe--CCEEEEECC
Confidence 122222 23358999998755544 367888874
No 430
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=88.77 E-value=49 Score=37.73 Aligned_cols=149 Identities=14% Similarity=0.176 Sum_probs=90.1
Q ss_pred CCCEEEEEEcCCcEEEEEcCCCCCcccccccCCceeEecCCCCeEEEEEcc----CCCEEEEEECCCcEEEEECCC--Cc
Q 003822 510 YPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNS----MDELFLASGYSKNIALYDINS--GR 583 (793)
Q Consensus 510 ~g~~Lasgs~DgtV~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~----~~~~lla~g~Dg~I~IWDl~t--g~ 583 (793)
+.+.+++||..|.++||+......... .-.....-..+|..+..-. .....++.=.-..+.+|.+.. |.
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~-----~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~ 110 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPE-----DLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGT 110 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCc-----cEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCC
Confidence 456899999999999999965432111 1122333446777776532 234566666778888888732 11
Q ss_pred -------EEEEEcccC--CCCeEEEEEcCCC----CcEEEEEeCCCeEEEEECCCCCccceEEccCCCCeEEEEEecCCC
Q 003822 584 -------RLQVFADMH--KEHINVVKFSNHS----PSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDH 650 (793)
Q Consensus 584 -------~l~~~~~gh--~~~V~sv~fspdg----~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~~~~vsv~fSpdg~ 650 (793)
.+..+. .| +.....+++-|-| ..++..-+.||.+.+|+-+.- .-...+++.--+--+.|.|.-.
T Consensus 111 ~~~g~~~~L~~~y-eh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~--~f~~~lp~~llPgPl~Y~~~tD 187 (418)
T PF14727_consen 111 VEHGNQYQLELIY-EHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESF--AFSRFLPDFLLPGPLCYCPRTD 187 (418)
T ss_pred cccCcEEEEEEEE-EEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcE--EEEEEcCCCCCCcCeEEeecCC
Confidence 111111 12 2233344443332 368899999999999997764 2122233322222388999888
Q ss_pred EEEEEeCCCeEEEEEc
Q 003822 651 YLLVSAVDNEVRQLLA 666 (793)
Q Consensus 651 ~Lasgs~Dg~I~IwDl 666 (793)
.+++++.+..+.-|..
T Consensus 188 sfvt~sss~~l~~Yky 203 (418)
T PF14727_consen 188 SFVTASSSWTLECYKY 203 (418)
T ss_pred EEEEecCceeEEEecH
Confidence 8999988888887764
No 431
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=88.65 E-value=1.3 Score=33.91 Aligned_cols=32 Identities=13% Similarity=0.111 Sum_probs=27.4
Q ss_pred CeEEEEEecCCCEEEEEeCCCeEEEEEcCCCcE
Q 003822 639 GNVMVCFSPDDHYLLVSAVDNEVRQLLAVDGRV 671 (793)
Q Consensus 639 ~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~ 671 (793)
.+..++|+|....||.|+.+|.|.++.+ +++.
T Consensus 13 ~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 13 RVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred cEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 3446999999999999999999999998 5543
No 432
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.37 E-value=11 Score=45.04 Aligned_cols=187 Identities=12% Similarity=0.162 Sum_probs=92.9
Q ss_pred CCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcccccccCCceeEecCC-CCe
Q 003822 475 DGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEF-DQL 553 (793)
Q Consensus 475 DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~~~~~~~~~~~~~~~~-~~V 553 (793)
--.|+|+++. |+.+..+.. .| +.+..+.|+ +...|+....||++++|++-....... .+.+... ..|
T Consensus 63 ~~~I~If~~s-G~lL~~~~w-~~-~~lI~mgWs--~~eeLI~v~k~g~v~Vy~~~ge~ie~~-------svg~e~~~~~I 130 (829)
T KOG2280|consen 63 RPYIRIFNIS-GQLLGRILW-KH-GELIGMGWS--DDEELICVQKDGTVHVYGLLGEFIESN-------SVGFESQMSDI 130 (829)
T ss_pred ceeEEEEecc-ccchHHHHh-cC-CCeeeeccc--CCceEEEEeccceEEEeecchhhhccc-------ccccccccCce
Confidence 3458888865 666655543 33 378899996 566788889999999999865332110 0101100 123
Q ss_pred EEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcc--cCCCCeEEEEEcCCCC--cEEEEEe-CCCeEEEEECCCCCc
Q 003822 554 TSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFAD--MHKEHINVVKFSNHSP--SIFATSS-FDQDVKLWDLRQKPI 628 (793)
Q Consensus 554 ~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~--gh~~~V~sv~fspdg~--~~LaTgs-~Dg~IrIWDlrt~~~ 628 (793)
..+.+.. ++. ++-..+|.+.+-+-.....+.+++. +..-+-+|-+..+++. ..++--. ..+ ..++-......
T Consensus 131 ~ec~~f~-~GV-avlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~ 207 (829)
T KOG2280|consen 131 VECRFFH-NGV-AVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRV 207 (829)
T ss_pred eEEEEec-Cce-EEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceecccc
Confidence 3333322 333 2233344444433222222233321 1111112222222211 1111110 111 11121222111
Q ss_pred cceEEccCCCCeEEEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEe
Q 003822 629 QPCYTASSSKGNVMVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFG 676 (793)
Q Consensus 629 ~~~~~l~~~~~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~ 676 (793)
........+..++.+..||++++|+--...|.|.+-+....+....+.
T Consensus 208 q~~~~~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 208 QLHALSWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFN 255 (829)
T ss_pred cccccCCCCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccC
Confidence 111111223455669999999999999999999998888777766665
No 433
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=88.04 E-value=59 Score=39.78 Aligned_cols=82 Identities=15% Similarity=0.118 Sum_probs=51.2
Q ss_pred CCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCC----------CCCccc--ccccCCceeEecCCCCeEEEEEccC---CC
Q 003822 499 NSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRH----------MPPSIR--GMHYGAGTVTFDEFDQLTSVHVNSM---DE 563 (793)
Q Consensus 499 ~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~----------~~~~~~--~~~~~~~~~~~~~~~~V~sv~~s~~---~~ 563 (793)
-.|..|..+ ++|..++..|..| |.|-.+.. ++..+. ...-............|..+.|||. +.
T Consensus 85 f~v~~i~~n-~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~ 162 (717)
T PF10168_consen 85 FEVHQISLN-PTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS 162 (717)
T ss_pred eeEEEEEEC-CCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence 357778876 7899988888765 44444432 111111 0000011111123356999999987 58
Q ss_pred EEEEEECCCcEEEEECCCC
Q 003822 564 LFLASGYSKNIALYDINSG 582 (793)
Q Consensus 564 ~lla~g~Dg~I~IWDl~tg 582 (793)
.+++-.+|+++++||+...
T Consensus 163 ~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 163 HLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred eEEEEecCCEEEEEecCCC
Confidence 8999999999999999754
No 434
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=87.77 E-value=32 Score=35.15 Aligned_cols=183 Identities=11% Similarity=0.071 Sum_probs=103.0
Q ss_pred EEEEEeeCCCCEEEEEEc--CCcEEEEEcCCCCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEE-CCCcEEEEE
Q 003822 502 LGLCWLKKYPSKLIAGSD--NGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASG-YSKNIALYD 578 (793)
Q Consensus 502 ~sv~fs~~~g~~Lasgs~--DgtV~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g-~Dg~I~IWD 578 (793)
..+.+. ++.++.+.+. ...|++||+.+++......-... ..|. ..++ .-++.+..-. .+|....+|
T Consensus 49 QGL~~~--~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~--~~Fg--EGit-----~~gd~~y~LTw~egvaf~~d 117 (262)
T COG3823 49 QGLEYL--DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPD--TVFG--EGIT-----KLGDYFYQLTWKEGVAFKYD 117 (262)
T ss_pred cceeee--CCEEEEeccccccceeEEEeccCceEEEEeecCCc--cccc--ccee-----eccceEEEEEeccceeEEEC
Confidence 345542 5666666654 34699999998776433222110 0111 1111 1234444444 589999999
Q ss_pred CCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEECCCCCccceEEccCCCCeE----EEEEecCCCEEEE
Q 003822 579 INSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV----MVCFSPDDHYLLV 654 (793)
Q Consensus 579 l~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~~~~v----sv~fSpdg~~Las 654 (793)
.++.+.+..+. ..+.=+.++. ++.+ |..+....+++.-|..+..............++ -+.|- +|...|-
T Consensus 118 ~~t~~~lg~~~--y~GeGWgLt~--d~~~-LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyAN 191 (262)
T COG3823 118 ADTLEELGRFS--YEGEGWGLTS--DDKN-LIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYAN 191 (262)
T ss_pred hHHhhhhcccc--cCCcceeeec--CCcc-eEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEe
Confidence 99999888887 5555566665 4423 555554556777776654222211111111222 14443 5666666
Q ss_pred EeCCCeEEEEEcCCCcEEEEEeeec---------CCCCCcEEEEEeeCCCeEEEEE
Q 003822 655 SAVDNEVRQLLAVDGRVHLNFGITA---------TGSSQNYTRSYYLNGRDYIVSG 701 (793)
Q Consensus 655 gs~Dg~I~IwDl~tg~~~~~l~~~~---------~~~~~v~s~afspdg~~~L~Sg 701 (793)
.-.+..|...+..+|+.+..++... .+......+++.|++.+++++|
T Consensus 192 Vw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 192 VWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred eeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 6666777778888888776665421 1122344678888876677776
No 435
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=87.39 E-value=0.36 Score=53.77 Aligned_cols=121 Identities=23% Similarity=0.364 Sum_probs=92.2
Q ss_pred ecCCccccchHHHHHHHHHhccceeEEeccCCc-hhhHHHH-HhhcCCceeeEeecccccccccc---cccccceeeEEe
Q 003822 79 RSGTSCMLTGEFALSLMHAIDQKLRVVDLHDSS-FGKDFIR-NLSQRGLMCEVLNLRSSRFRKLN---MIGEFKRIHTLN 153 (793)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 153 (793)
.+=++|.|+|.-++.++-.+- -|.+++|+-+. -+....+ +.+|. =|.|+|.++.+--++ ..|.|++|..||
T Consensus 202 L~l~~CGls~k~V~~~~~~fP-sl~~L~L~~N~~~~~~~~~~~i~~~---L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 202 LVLNSCGLSWKDVQWILLTFP-SLEVLYLEANEIILIKATSTKILQT---LQELDLSNNNLIDFDQGYKVGTLPGLNQLN 277 (505)
T ss_pred EEeccCCCCHHHHHHHHHhCC-cHHHhhhhcccccceecchhhhhhH---HhhccccCCcccccccccccccccchhhhh
Confidence 456889999999998887774 46788888873 2221111 22221 267999988887776 789999999999
Q ss_pred eccccccccccc-cc-----cccccccceeccccccchhhhHHHHHHhcCCcccceec
Q 003822 154 LDYSTSLTSFKE-DC-----FSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELRF 205 (793)
Q Consensus 154 ~~~~~~~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (793)
|. .+.|+|+.+ || -.-.|+|+.|.-=+..+.. |-..--|.+|++|+-|||
T Consensus 278 ls-~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~-w~sl~~l~~l~nlk~l~~ 333 (505)
T KOG3207|consen 278 LS-STGIASIAEPDVESLDKTHTFPKLEYLNISENNIRD-WRSLNHLRTLENLKHLRI 333 (505)
T ss_pred cc-ccCcchhcCCCccchhhhcccccceeeecccCcccc-ccccchhhccchhhhhhc
Confidence 99 899999976 44 3447999999877665543 999999999999999996
No 436
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=87.02 E-value=50 Score=35.93 Aligned_cols=109 Identities=6% Similarity=0.119 Sum_probs=55.7
Q ss_pred CCCEEEEEECC-----CcEEEEECCCCcEE---EEEccc-CCCCeEEEEEcCCCCcEEEEEeCC-----CeEEEEECCCC
Q 003822 561 MDELFLASGYS-----KNIALYDINSGRRL---QVFADM-HKEHINVVKFSNHSPSIFATSSFD-----QDVKLWDLRQK 626 (793)
Q Consensus 561 ~~~~lla~g~D-----g~I~IWDl~tg~~l---~~~~~g-h~~~V~sv~fspdg~~~LaTgs~D-----g~IrIWDlrt~ 626 (793)
.+..++.||.+ ..+..||+.+.+.. ..+... ....-.+++.. ++ ++++.|+.. ..+..||+.+.
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~-~~-~iYv~GG~~~~~~~~~v~~yd~~~~ 149 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYK-DG-TLYVGGGNRNGKPSNKSYLFNLETQ 149 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEE-CC-EEEEEeCcCCCccCceEEEEcCCCC
Confidence 45566666643 35777888766531 222210 11111122222 34 677777742 35888998876
Q ss_pred CccceEEccCCCCeEEEEEecCCCEEEEEeCCC----eEEEEEcCCCcE
Q 003822 627 PIQPCYTASSSKGNVMVCFSPDDHYLLVSAVDN----EVRQLLAVDGRV 671 (793)
Q Consensus 627 ~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs~Dg----~I~IwDl~tg~~ 671 (793)
+...+..++........+..-+++..+.|+.++ .+.+||..+.+.
T Consensus 150 ~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W 198 (323)
T TIGR03548 150 EWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQW 198 (323)
T ss_pred CeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCee
Confidence 544333222211111122334566667776553 356788887654
No 437
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=86.98 E-value=37 Score=34.88 Aligned_cols=104 Identities=13% Similarity=0.147 Sum_probs=64.9
Q ss_pred CEEEEEECCCcEEEEECC--CCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeCC---C---eEEEE---ECCCCCc---
Q 003822 563 ELFLASGYSKNIALYDIN--SGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFD---Q---DVKLW---DLRQKPI--- 628 (793)
Q Consensus 563 ~~lla~g~Dg~I~IWDl~--tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~D---g---~IrIW---Dlrt~~~--- 628 (793)
+.++.+...+.|.+|++. ..+...+|. .-+.|..+.++..| ++++|--.+ . .+|+| .......
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~--Tv~~V~~l~y~~~G-DYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v 105 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFS--TVGRVLQLVYSEAG-DYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPV 105 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEc--chhheeEEEecccc-ceEEEEEeecCCccceEEEEEEEhhhhcccCCcE
Confidence 444444667889999998 355677777 55899999999998 888885432 2 46664 2221111
Q ss_pred --------------------cceEEccCCCCeEEEEEecCCCEEEEEeCCCeEEEEEcCCCc
Q 003822 629 --------------------QPCYTASSSKGNVMVCFSPDDHYLLVSAVDNEVRQLLAVDGR 670 (793)
Q Consensus 629 --------------------~~~~~l~~~~~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~ 670 (793)
..+..++-...+.+++-.|-..-|++|+ ++.+.+|.+....
T Consensus 106 ~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~ 166 (215)
T PF14761_consen 106 RVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQT 166 (215)
T ss_pred EEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEE
Confidence 1122233334455677777444466776 5688899876543
No 438
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=86.98 E-value=0.091 Score=58.72 Aligned_cols=143 Identities=10% Similarity=0.158 Sum_probs=101.2
Q ss_pred EEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEECCCCCccceEEc
Q 003822 555 SVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTA 634 (793)
Q Consensus 555 sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l 634 (793)
...|-+.+..++.++.+..+..||-. ++..-... .++..-.++|..+++..++.+-..+.+.+||+.+.....+ ..
T Consensus 39 ~~~w~~e~~nlavaca~tiv~~YD~a-gq~~le~n--~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqL-E~ 114 (615)
T KOG2247|consen 39 IHRWRPEGHNLAVACANTIVIYYDKA-GQVILELN--PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQL-ES 114 (615)
T ss_pred eeeEecCCCceehhhhhhHHHhhhhh-cceecccC--CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHH-hc
Confidence 34566788888888888999999865 44333333 4556667889888877777788889999999987543322 22
Q ss_pred cCCCCeEE-EEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCCCeEEEEEeCCCcE
Q 003822 635 SSSKGNVM-VCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNGRDYIVSGSCDEHV 707 (793)
Q Consensus 635 ~~~~~~vs-v~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~I 707 (793)
.+. ..-+ +.|++.+..++.|...|.+.|++..+.+.+.... .+...++..++.+.+ +++.++.|..+
T Consensus 115 gg~-~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~G---kh~RRgtq~av~lEd--~vil~dcd~~L 182 (615)
T KOG2247|consen 115 GGT-SSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMG---KHQRRGTQIAVTLED--YVILCDCDNTL 182 (615)
T ss_pred cCc-chHHHHhhccCCccccccccccceEEEeccchhhhhhhc---ccccceeEEEecccc--eeeecCcHHHH
Confidence 221 1122 8899999999999999999999988877654431 255667788888887 47777666443
No 439
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.95 E-value=21 Score=45.22 Aligned_cols=158 Identities=15% Similarity=0.224 Sum_probs=90.3
Q ss_pred EEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCC-------EEEEEEcCCcEEEEEcCCC
Q 003822 459 FEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPS-------KLIAGSDNGSLKLYDIRHM 531 (793)
Q Consensus 459 vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~-------~Lasgs~DgtV~vWDl~~~ 531 (793)
+-+-|.-+..-+| .|..+.+|+.+++.....+. +-...|..|....|.+. ++...+.--.|.++-+.-.
T Consensus 84 mGiFpeI~RaWiT--iDn~L~lWny~~~~e~~~~d--~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~ 159 (1311)
T KOG1900|consen 84 MGIFPEIGRAWIT--IDNNLFLWNYESDNELAEYD--GLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFD 159 (1311)
T ss_pred eccchhhcceEEE--eCCeEEEEEcCCCCcccccc--chhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEec
Confidence 3344433444443 37889999999977776666 34446777665544432 2333333345666655433
Q ss_pred CCcccccccCCceeEe-cCCCCeEEEEEccCCCEEEEEECCCcEEEEEC----CCC---c-E----------------EE
Q 003822 532 PPSIRGMHYGAGTVTF-DEFDQLTSVHVNSMDELFLASGYSKNIALYDI----NSG---R-R----------------LQ 586 (793)
Q Consensus 532 ~~~~~~~~~~~~~~~~-~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl----~tg---~-~----------------l~ 586 (793)
+.......... .... .....|.++.. ..++.++.+|.||. +|.+ ..| + + +-
T Consensus 160 ~~~~~~~~f~~-~~~i~~dg~~V~~I~~-t~nGRIF~~G~dg~--lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~ 235 (1311)
T KOG1900|consen 160 EFTGELSIFNT-SFKISVDGVSVNCITY-TENGRIFFAGRDGN--LYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLL 235 (1311)
T ss_pred cccCccccccc-ceeeecCCceEEEEEe-ccCCcEEEeecCCC--EEEEEEeccCchhhcccccccCchhHHHHhhhhhh
Confidence 22110000000 1111 11345788884 56677777777774 4443 221 1 1 11
Q ss_pred EEcccCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEECCC
Q 003822 587 VFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQ 625 (793)
Q Consensus 587 ~~~~gh~~~V~sv~fspdg~~~LaTgs~Dg~IrIWDlrt 625 (793)
.+.+.+..+|..++....- +++.+-+..|+|.+||+..
T Consensus 236 ~~~~~~~dpI~qi~ID~SR-~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 236 SVPGSSKDPIRQITIDNSR-NILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred cCCCCCCCcceeeEecccc-ceeeeeccCceEEEEEccC
Confidence 1222467899999998765 7999999999999999976
No 440
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=86.92 E-value=45 Score=35.22 Aligned_cols=110 Identities=13% Similarity=0.026 Sum_probs=62.8
Q ss_pred CeEEEEEcCCCCcEEEEEe---CCCeEEEEECCCCCccceEEccCCCCeEEEEEecCCCEEEEEeCCCeEEEEE-cCCCc
Q 003822 595 HINVVKFSNHSPSIFATSS---FDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLVSAVDNEVRQLL-AVDGR 670 (793)
Q Consensus 595 ~V~sv~fspdg~~~LaTgs---~Dg~IrIWDlrt~~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs~Dg~I~IwD-l~tg~ 670 (793)
.+.+.++++++ ..++... ....+.++..... .... ..+ .......|+++|...++...+...+++. ..++.
T Consensus 25 ~~~s~AvS~dg-~~~A~v~~~~~~~~L~~~~~~~~--~~~~-~~g-~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~ 99 (253)
T PF10647_consen 25 DVTSPAVSPDG-SRVAAVSEGDGGRSLYVGPAGGP--VRPV-LTG-GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGT 99 (253)
T ss_pred cccceEECCCC-CeEEEEEEcCCCCEEEEEcCCCc--ceee-ccC-CccccccccCCCCEEEEEcCCCceEEEEecCCCc
Confidence 68899999999 4444433 3334555554432 2111 122 2444589999988777777666666663 34443
Q ss_pred EEEEEeeecCCCC-CcEEEEEeeCCCeEEEEEe--CCCcEEEEE
Q 003822 671 VHLNFGITATGSS-QNYTRSYYLNGRDYIVSGS--CDEHVVRIC 711 (793)
Q Consensus 671 ~~~~l~~~~~~~~-~v~s~afspdg~~~L~Sgs--~Dg~II~IW 711 (793)
... ......... .|..+.++|||.+..+... .++.+ .|=
T Consensus 100 ~~~-~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v-~va 141 (253)
T PF10647_consen 100 GEP-VEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRV-YVA 141 (253)
T ss_pred cee-EEecccccCCceEEEEECCCCcEEEEEEecCCCCeE-EEE
Confidence 321 111112222 7889999999995544442 34455 444
No 441
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.80 E-value=5.1 Score=49.59 Aligned_cols=142 Identities=8% Similarity=0.057 Sum_probs=83.7
Q ss_pred CCCCE--EEEEEcCCcEEEEEcCCCCCcc----cccccCCceeEecCCCCeEEEEEccCCCEE-EEEECCCcEEEEECCC
Q 003822 509 KYPSK--LIAGSDNGSLKLYDIRHMPPSI----RGMHYGAGTVTFDEFDQLTSVHVNSMDELF-LASGYSKNIALYDINS 581 (793)
Q Consensus 509 ~~g~~--Lasgs~DgtV~vWDl~~~~~~~----~~~~~~~~~~~~~~~~~V~sv~~s~~~~~l-la~g~Dg~I~IWDl~t 581 (793)
+++.. ++..+.+-.|..||+++-.... ..+..+ ...+.......++.|+|.-..- ++...|+.|.+.-+..
T Consensus 110 ~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s--~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~ 187 (1405)
T KOG3630|consen 110 HDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNS--ATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQ 187 (1405)
T ss_pred cCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccc--cchhccccccccccccCCccchhhhhccccchhhhhhhh
Confidence 35443 3334455578999998643311 111111 1122333456778888765544 4444788888887664
Q ss_pred Cc-EEEEEcccCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEECCCCCccceEEc--cCCCCeEEEEEecCCCEEEEE
Q 003822 582 GR-RLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTA--SSSKGNVMVCFSPDDHYLLVS 655 (793)
Q Consensus 582 g~-~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l--~~~~~~vsv~fSpdg~~Lasg 655 (793)
.. .+..+. ....+++++|+|.| +.++.|-..|++.-|-..-.....+... .....+.+++|-....++++-
T Consensus 188 ~~~~v~s~p--~t~~~Tav~WSprG-KQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvvy 261 (1405)
T KOG3630|consen 188 LAQNVTSFP--VTNSQTAVLWSPRG-KQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSVTWLSTQEFLVVY 261 (1405)
T ss_pred hhhhhcccC--cccceeeEEecccc-ceeeEecCCCeEEEeecccceeecccCCCcCCCcceeEEEEecceeEEEEe
Confidence 32 333333 56788999999999 8999999999999886544211111111 112345578888777766653
No 442
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=86.63 E-value=0.49 Score=35.71 Aligned_cols=36 Identities=22% Similarity=0.451 Sum_probs=16.2
Q ss_pred eeeEEeeccccccccccccccccccccceeccccccch
Q 003822 148 RIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVG 185 (793)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (793)
+|++|+|. .+.|+.|+. .|+.||+|..|++-+.++.
T Consensus 2 ~L~~L~l~-~N~i~~l~~-~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLS-NNQITDLPP-ELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEET-SSS-SSHGG-HGTTCTTSSEEEETSSCCS
T ss_pred cceEEEcc-CCCCcccCc-hHhCCCCCCEEEecCCCCC
Confidence 34445554 234555443 2455555555555554444
No 443
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=85.53 E-value=68 Score=36.02 Aligned_cols=204 Identities=13% Similarity=0.163 Sum_probs=110.5
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEe---eCCCCE--EEEEE-cC---CcEEEEEcCCCCCcc
Q 003822 465 ISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWL---KKYPSK--LIAGS-DN---GSLKLYDIRHMPPSI 535 (793)
Q Consensus 465 d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs---~~~g~~--Lasgs-~D---gtV~vWDl~~~~~~~ 535 (793)
...+++....++-+.+||++ |+.+..+.. +.+..|..- +-+++. |+.++ .+ .+|++|.+......+
T Consensus 67 ~kSlIigTdK~~GL~VYdL~-Gk~lq~~~~----Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L 141 (381)
T PF02333_consen 67 AKSLIIGTDKKGGLYVYDLD-GKELQSLPV----GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGEL 141 (381)
T ss_dssp GG-EEEEEETTTEEEEEETT-S-EEEEE-S----S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEE
T ss_pred ccceEEEEeCCCCEEEEcCC-CcEEEeecC----CCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcc
Confidence 45677777888899999997 556666642 334444321 123432 44444 32 469999887533333
Q ss_pred cccccCCceeEecCCCCeEEEEEc--cCC-C-EEEEEECCCcEEEEECC---CC----cEEEEEcccCCCCeEEEEEcCC
Q 003822 536 RGMHYGAGTVTFDEFDQLTSVHVN--SMD-E-LFLASGYSKNIALYDIN---SG----RRLQVFADMHKEHINVVKFSNH 604 (793)
Q Consensus 536 ~~~~~~~~~~~~~~~~~V~sv~~s--~~~-~-~lla~g~Dg~I~IWDl~---tg----~~l~~~~~gh~~~V~sv~fspd 604 (793)
.........+ ......++.+++. +.+ . +.++.+.+|.+.-|-+. .+ +.++.|. -...+..+.....
T Consensus 142 ~~v~~~~~p~-~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~--~~sQ~EGCVVDDe 218 (381)
T PF02333_consen 142 TDVTDPAAPI-ATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFK--VGSQPEGCVVDDE 218 (381)
T ss_dssp EE-CBTTC-E-E-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE---SS-EEEEEEETT
T ss_pred eEcCCCCccc-ccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEec--CCCcceEEEEecc
Confidence 3222111111 1223457778764 333 3 44445578988777664 33 4677776 3457888888877
Q ss_pred CCcEEEEEeCCCeEEEEECCCCC---ccceEEccCC--CCe---EEEEEecCC-CEEEEEe-CCCeEEEEEcCC-CcEEE
Q 003822 605 SPSIFATSSFDQDVKLWDLRQKP---IQPCYTASSS--KGN---VMVCFSPDD-HYLLVSA-VDNEVRQLLAVD-GRVHL 673 (793)
Q Consensus 605 g~~~LaTgs~Dg~IrIWDlrt~~---~~~~~~l~~~--~~~---vsv~fSpdg-~~Lasgs-~Dg~I~IwDl~t-g~~~~ 673 (793)
. ..|..|-.+.-|.-|+..... ...+....+. ..- +++-..++| .||++++ .+++..||+... ...+.
T Consensus 219 ~-g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~~~~~g 297 (381)
T PF02333_consen 219 T-GRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGPNAYVG 297 (381)
T ss_dssp T-TEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT--EEE
T ss_pred c-CCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCCCcccc
Confidence 6 688889999888888876321 1222222221 111 233334454 3666666 477899999764 35556
Q ss_pred EEee
Q 003822 674 NFGI 677 (793)
Q Consensus 674 ~l~~ 677 (793)
.|.+
T Consensus 298 ~f~i 301 (381)
T PF02333_consen 298 SFRI 301 (381)
T ss_dssp EEEE
T ss_pred eEEe
Confidence 6654
No 444
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=85.47 E-value=60 Score=35.34 Aligned_cols=231 Identities=11% Similarity=0.136 Sum_probs=105.3
Q ss_pred cceEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEecc-CCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCC
Q 003822 454 FRPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSF-GAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMP 532 (793)
Q Consensus 454 ~~V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~-~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~ 532 (793)
++.++|.|.. + ..+++|. .| +.+...+.|+.-..+... .-.+....+... .++ ....++..|. +|....+-
T Consensus 62 ~~l~~I~f~~-~-~g~ivG~-~g-~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l-~~~-~~~l~~~~G~--iy~T~DgG 133 (302)
T PF14870_consen 62 YHLNSISFDG-N-EGWIVGE-PG-LLLHTTDGGKTWERVPLSSKLPGSPFGITAL-GDG-SAELAGDRGA--IYRTTDGG 133 (302)
T ss_dssp -EEEEEEEET-T-EEEEEEE-TT-EEEEESSTTSS-EE----TT-SS-EEEEEEE-ETT-EEEEEETT----EEEESSTT
T ss_pred eeEEEEEecC-C-ceEEEcC-Cc-eEEEecCCCCCcEEeecCCCCCCCeeEEEEc-CCC-cEEEEcCCCc--EEEeCCCC
Confidence 3467788876 3 3455554 44 444445555433332211 122344555544 233 4444445554 45555544
Q ss_pred CcccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcE-EEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEE
Q 003822 533 PSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNI-ALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFAT 611 (793)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I-~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaT 611 (793)
....... ......+..+...+++. +++++..|.+ .-||--...-...-. .-...|..+.|.|++ .+.++
T Consensus 134 ~tW~~~~-------~~~~gs~~~~~r~~dG~-~vavs~~G~~~~s~~~G~~~w~~~~r-~~~~riq~~gf~~~~-~lw~~ 203 (302)
T PF14870_consen 134 KTWQAVV-------SETSGSINDITRSSDGR-YVAVSSRGNFYSSWDPGQTTWQPHNR-NSSRRIQSMGFSPDG-NLWML 203 (302)
T ss_dssp SSEEEEE--------S----EEEEEE-TTS--EEEEETTSSEEEEE-TT-SS-EEEE---SSS-EEEEEE-TTS--EEEE
T ss_pred CCeeEcc-------cCCcceeEeEEECCCCc-EEEEECcccEEEEecCCCccceEEcc-CccceehhceecCCC-CEEEE
Confidence 3322211 11225567777655555 5555555554 567755332222222 256899999999998 55443
Q ss_pred EeCCCeEEEEECCCC-Cc--cceEEc-cCCCCeEEEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcEE
Q 003822 612 SSFDQDVKLWDLRQK-PI--QPCYTA-SSSKGNVMVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNYT 687 (793)
Q Consensus 612 gs~Dg~IrIWDlrt~-~~--~~~~~l-~~~~~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s 687 (793)
...|.|+.=+.... .. .+.... ....+...++|.+++...++|+ .|.+ +.....|+.-.............+.
T Consensus 204 -~~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l-~~S~DgGktW~~~~~~~~~~~n~~~ 280 (302)
T PF14870_consen 204 -ARGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTL-LVSTDGGKTWQKDRVGENVPSNLYR 280 (302)
T ss_dssp -ETTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEES-TT-E-EEESSTTSS-EE-GGGTTSSS---E
T ss_pred -eCCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeC-CccE-EEeCCCCccceECccccCCCCceEE
Confidence 48888888772211 00 111111 1223456799999888777666 5544 4555666654444332234456788
Q ss_pred EEEeeCCCeEEEEEeCCCcE
Q 003822 688 RSYYLNGRDYIVSGSCDEHV 707 (793)
Q Consensus 688 ~afspdg~~~L~Sgs~Dg~I 707 (793)
+.|.++++ -..-+.+|.+
T Consensus 281 i~f~~~~~--gf~lG~~G~l 298 (302)
T PF14870_consen 281 IVFVNPDK--GFVLGQDGVL 298 (302)
T ss_dssp EEEEETTE--EEEE-STTEE
T ss_pred EEEcCCCc--eEEECCCcEE
Confidence 88887765 3344577877
No 445
>PLN02193 nitrile-specifier protein
Probab=85.19 E-value=57 Score=37.82 Aligned_cols=108 Identities=10% Similarity=0.158 Sum_probs=55.0
Q ss_pred CCCEEEEEECC-----CcEEEEECCCCcEEEEEcc---cCCCCeEEEEEcCCCCcEEEEEeCCC-----eEEEEECCCCC
Q 003822 561 MDELFLASGYS-----KNIALYDINSGRRLQVFAD---MHKEHINVVKFSNHSPSIFATSSFDQ-----DVKLWDLRQKP 627 (793)
Q Consensus 561 ~~~~lla~g~D-----g~I~IWDl~tg~~l~~~~~---gh~~~V~sv~fspdg~~~LaTgs~Dg-----~IrIWDlrt~~ 627 (793)
.+..++.+|.+ ..+..||+.+.+-...-.. .....-.+++.. ++ ++++.|+.++ .+..||+.+..
T Consensus 228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~-~~-~iYv~GG~~~~~~~~~~~~yd~~t~~ 305 (470)
T PLN02193 228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAAD-EE-NVYVFGGVSATARLKTLDSYNIVDKK 305 (470)
T ss_pred CCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEE-CC-EEEEECCCCCCCCcceEEEEECCCCE
Confidence 44455555543 4688999987654332110 011111122222 34 6777777643 46788887754
Q ss_pred ccceEEc---cCCCCeEEEEEecCCCEEEEEeCC----CeEEEEEcCCCcE
Q 003822 628 IQPCYTA---SSSKGNVMVCFSPDDHYLLVSAVD----NEVRQLLAVDGRV 671 (793)
Q Consensus 628 ~~~~~~l---~~~~~~vsv~fSpdg~~Lasgs~D----g~I~IwDl~tg~~ 671 (793)
...+... ........++ .-+++..+.++.+ +.+.+||+.+.+.
T Consensus 306 W~~~~~~~~~~~~R~~~~~~-~~~gkiyviGG~~g~~~~dv~~yD~~t~~W 355 (470)
T PLN02193 306 WFHCSTPGDSFSIRGGAGLE-VVQGKVWVVYGFNGCEVDDVHYYDPVQDKW 355 (470)
T ss_pred EEeCCCCCCCCCCCCCcEEE-EECCcEEEEECCCCCccCceEEEECCCCEE
Confidence 3322110 0001111122 2356777777654 4689999988765
No 446
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=84.97 E-value=46 Score=34.04 Aligned_cols=184 Identities=10% Similarity=0.038 Sum_probs=100.1
Q ss_pred CCCEEEEEEC--CCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEECCCCCccceEEccCCC
Q 003822 561 MDELFLASGY--SKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSK 638 (793)
Q Consensus 561 ~~~~lla~g~--Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~~ 638 (793)
++..+.++|. ...|++||+.+|+.+..-+- ....+..=-...-+..+.+-.=.+|.-..+|.++-+..-.+..++..
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l-~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~GeG 133 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKL-APDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGEG 133 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeec-CCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCCcc
Confidence 3444455553 46799999999998876552 11122111111112123333445778888998887655555555533
Q ss_pred CeEEEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCC--CCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCC
Q 003822 639 GNVMVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGS--SQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTG 716 (793)
Q Consensus 639 ~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~--~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg 716 (793)
- ....|+.-|+.+....+++.-|..+-....++.....+. .....+.| -+|. ..|-.=.+.+| -.-+..+|
T Consensus 134 W----gLt~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~-VdG~-lyANVw~t~~I-~rI~p~sG 206 (262)
T COG3823 134 W----GLTSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEW-VDGE-LYANVWQTTRI-ARIDPDSG 206 (262)
T ss_pred e----eeecCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceee-eccE-EEEeeeeecce-EEEcCCCC
Confidence 2 233466667777666777777776655444444322221 11112222 2454 44444444556 56688899
Q ss_pred cEEEeeeecCCCCCccceeeeccCCccccCCccEEEEEEcCCCCc
Q 003822 717 RRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKS 761 (793)
Q Consensus 717 ~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~~~ 761 (793)
+.+..+.+.+-. ... .+-..|....+++++.|....
T Consensus 207 rV~~widlS~L~-----~~~----~~~~~~~nvlNGIA~~~~~~r 242 (262)
T COG3823 207 RVVAWIDLSGLL-----KEL----NLDKSNDNVLNGIAHDPQQDR 242 (262)
T ss_pred cEEEEEEccCCc-----hhc----CccccccccccceeecCcCCe
Confidence 988866555532 111 122234557788999996433
No 447
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=84.10 E-value=0.75 Score=59.40 Aligned_cols=78 Identities=19% Similarity=0.279 Sum_probs=51.4
Q ss_pred eEeecccccccccc-cccccceeeEEeeccccccccccccccccccccceeccccccchhhhHHHHHHhcCCcccceecc
Q 003822 128 EVLNLRSSRFRKLN-MIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELRFQ 206 (793)
Q Consensus 128 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (793)
+.|+|+.+++.+|- -.+.+.+|.+|+|.++..++.++. |+-+|+|..|.+.+.. +|=..-..+.+|++|++|.|.
T Consensus 614 ~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~--~L~~lp~si~~L~~L~~L~L~ 689 (1153)
T PLN03210 614 VKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCS--SLVELPSSIQYLNKLEDLDMS 689 (1153)
T ss_pred cEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCC--CccccchhhhccCCCCEEeCC
Confidence 45777777777762 345677888888888877777775 5557888877765421 111223456777888888887
Q ss_pred eee
Q 003822 207 NWL 209 (793)
Q Consensus 207 ~~~ 209 (793)
.|-
T Consensus 690 ~c~ 692 (1153)
T PLN03210 690 RCE 692 (1153)
T ss_pred CCC
Confidence 663
No 448
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=84.06 E-value=3.6 Score=30.93 Aligned_cols=31 Identities=16% Similarity=0.381 Sum_probs=27.0
Q ss_pred ceEEEEEeCCCC--CEEEEEeCCCeEEEEECCC
Q 003822 455 RPRQFEYHPSIS--CLMVFGTLDGEIVVVNHEN 485 (793)
Q Consensus 455 ~V~~vafsP~d~--~~Lasgs~DG~I~VWd~~t 485 (793)
+++++.|+|..+ ++|+.+-..|.|.|+|+.+
T Consensus 2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 389999998656 7999999999999999985
No 449
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=83.74 E-value=30 Score=38.59 Aligned_cols=101 Identities=10% Similarity=0.103 Sum_probs=54.7
Q ss_pred CCeEEEEEccCCCEEEEEECCCcEEEEECCC-C----cE--E-EEEccc---CCCCeEEEEEcCCCCcEEEEEeC-----
Q 003822 551 DQLTSVHVNSMDELFLASGYSKNIALYDINS-G----RR--L-QVFADM---HKEHINVVKFSNHSPSIFATSSF----- 614 (793)
Q Consensus 551 ~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~t-g----~~--l-~~~~~g---h~~~V~sv~fspdg~~~LaTgs~----- 614 (793)
.....+++.+.+ ++++......++.|... + +. + ..+... +......++|.|+| .+.++-+.
T Consensus 72 ~~p~Gi~~~~~G--lyV~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG-~LYv~~G~~~~~~ 148 (367)
T TIGR02604 72 SMVTGLAVAVGG--VYVATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDG-WLYFNHGNTLASK 148 (367)
T ss_pred CCccceeEecCC--EEEeCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCC-CEEEecccCCCce
Confidence 345778886555 44444443333435432 1 21 1 123211 23457789999998 55554331
Q ss_pred --------------CCeEEEEECCCCCccceEEccCCCCeEEEEEecCCCEEEEEe
Q 003822 615 --------------DQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLVSA 656 (793)
Q Consensus 615 --------------Dg~IrIWDlrt~~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs 656 (793)
.|.|.-+|..+.... ....+...+..++|+|+|+.+++-.
T Consensus 149 ~~~~~~~~~~~~~~~g~i~r~~pdg~~~e--~~a~G~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 149 VTRPGTSDESRQGLGGGLFRYNPDGGKLR--VVAHGFQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred eccCCCccCcccccCceEEEEecCCCeEE--EEecCcCCCccceECCCCCEEEEcc
Confidence 144555566554322 2234555566799999999876644
No 450
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=83.53 E-value=0.61 Score=35.18 Aligned_cols=36 Identities=22% Similarity=0.432 Sum_probs=28.7
Q ss_pred eEeeccccccccccc-ccccceeeEEeecccccccccc
Q 003822 128 EVLNLRSSRFRKLNM-IGEFKRIHTLNLDYSTSLTSFK 164 (793)
Q Consensus 128 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 164 (793)
+.|+|+.+.|.++.- .+.+++|.+|+|+.+ .|++|+
T Consensus 4 ~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~ 40 (44)
T PF12799_consen 4 EELDLSNNQITDLPPELSNLPNLETLNLSNN-PISDIS 40 (44)
T ss_dssp SEEEETSSS-SSHGGHGTTCTTSSEEEETSS-CCSBEG
T ss_pred eEEEccCCCCcccCchHhCCCCCCEEEecCC-CCCCCc
Confidence 578888899998888 888999999999865 677654
No 451
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=83.38 E-value=47 Score=37.00 Aligned_cols=153 Identities=14% Similarity=0.070 Sum_probs=87.9
Q ss_pred CCCEEEEEECCCcEEEEECCCCcEEEEEcccC-CCCeEEEEEcCCCCcEEEEEeCCCeEEEEECCCCCccceEEccCCCC
Q 003822 561 MDELFLASGYSKNIALYDINSGRRLQVFADMH-KEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKG 639 (793)
Q Consensus 561 ~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh-~~~V~sv~fspdg~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~~~ 639 (793)
.++.++++..+|.|.-.|..+++.+....... ...+..-.+..+| .++.++.++.+..+|.+++...-.+.... ..
T Consensus 67 ~dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G--~i~~g~~~g~~y~ld~~~G~~~W~~~~~~-~~ 143 (370)
T COG1520 67 GDGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDG--KIYVGSWDGKLYALDASTGTLVWSRNVGG-SP 143 (370)
T ss_pred eCCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCC--eEEEecccceEEEEECCCCcEEEEEecCC-Ce
Confidence 46677777888999999999988776544111 1222322333366 47778889989999998775443333333 11
Q ss_pred eE-EEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCCCeEEEEEeC--CCcEEEEEEcCCC
Q 003822 640 NV-MVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNGRDYIVSGSC--DEHVVRICCAQTG 716 (793)
Q Consensus 640 ~v-sv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~--Dg~II~IWDv~tg 716 (793)
.. ....-.++ .+..++.++.+.-.|..+|+..-.......-...+.......++ .++.+.. ++.+ .-.|+.+|
T Consensus 144 ~~~~~~v~~~~-~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~--~vy~~~~~~~~~~-~a~~~~~G 219 (370)
T COG1520 144 YYASPPVVGDG-TVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASG--TVYVGSDGYDGIL-YALNAEDG 219 (370)
T ss_pred EEecCcEEcCc-EEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecc--eEEEecCCCcceE-EEEEccCC
Confidence 11 12222233 34444467889999988888866654322101111111112333 4555555 5566 77788888
Q ss_pred cEEE
Q 003822 717 RRLR 720 (793)
Q Consensus 717 ~~l~ 720 (793)
+.+.
T Consensus 220 ~~~w 223 (370)
T COG1520 220 TLKW 223 (370)
T ss_pred cEee
Confidence 8887
No 452
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=83.29 E-value=25 Score=42.38 Aligned_cols=115 Identities=15% Similarity=0.077 Sum_probs=74.4
Q ss_pred eEEEEEcCCC-CcEEEEEeCCCeEEEEECCC------------------CCccceEEccCCCCeEEEEEe--cCCCEEEE
Q 003822 596 INVVKFSNHS-PSIFATSSFDQDVKLWDLRQ------------------KPIQPCYTASSSKGNVMVCFS--PDDHYLLV 654 (793)
Q Consensus 596 V~sv~fspdg-~~~LaTgs~Dg~IrIWDlrt------------------~~~~~~~~l~~~~~~vsv~fS--pdg~~Las 654 (793)
|+-+....-| ...|+.|..||.|.+|.+.+ ....|.+.+........++++ ...++||+
T Consensus 103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAV 182 (717)
T PF08728_consen 103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAV 182 (717)
T ss_pred eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEE
Confidence 4444443322 26888999999999996631 012234444444555678888 78899999
Q ss_pred EeCCCeEEEEEcCCC--cEEEEEeeecCCCCCcEEEEEeeCC--C---eEEEEEeCCCcEEEEEEc
Q 003822 655 SAVDNEVRQLLAVDG--RVHLNFGITATGSSQNYTRSYYLNG--R---DYIVSGSCDEHVVRICCA 713 (793)
Q Consensus 655 gs~Dg~I~IwDl~tg--~~~~~l~~~~~~~~~v~s~afspdg--~---~~L~Sgs~Dg~II~IWDv 713 (793)
++....|.||-.... +....- ...+...+..++|-++. . ..|++++-.|.+ .+|++
T Consensus 183 SsNs~~VTVFaf~l~~~r~~~~~--s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v-~~~~I 245 (717)
T PF08728_consen 183 SSNSQEVTVFAFALVDERFYHVP--SHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEV-WTFKI 245 (717)
T ss_pred ecCCceEEEEEEecccccccccc--ccccccCCCeeEeecCCCCCccceEEEEEeccCcE-EEEEE
Confidence 998888888765432 211110 11355678888887754 1 378889999998 78777
No 453
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=83.07 E-value=4.2 Score=30.56 Aligned_cols=32 Identities=22% Similarity=0.314 Sum_probs=27.4
Q ss_pred CCeEEEEEcCCCC--cEEEEEeCCCeEEEEECCC
Q 003822 594 EHINVVKFSNHSP--SIFATSSFDQDVKLWDLRQ 625 (793)
Q Consensus 594 ~~V~sv~fspdg~--~~LaTgs~Dg~IrIWDlrt 625 (793)
+.|.++.|+|... .+|+.+-.-|.|.|+|+|+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 4689999998764 6888888889999999995
No 454
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=83.03 E-value=0.22 Score=59.35 Aligned_cols=162 Identities=15% Similarity=0.201 Sum_probs=85.4
Q ss_pred eEEEEEeCC--CCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEE----------eeCCCCEEEEEEcCCcE
Q 003822 456 PRQFEYHPS--ISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCW----------LKKYPSKLIAGSDNGSL 523 (793)
Q Consensus 456 V~~vafsP~--d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~f----------s~~~g~~Lasgs~DgtV 523 (793)
+.-|.|.|- +..++..+-.+|+|++.++++... ..+. +|...++.++| .++||..|+++..||.+
T Consensus 183 ~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~r--sHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v 259 (1283)
T KOG1916|consen 183 PQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFR--SHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSV 259 (1283)
T ss_pred cceeeecccccccceeeeccCCCceeEeeechHHH-HHHH--hcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCcc
Confidence 344555551 446777788899999888765432 2222 46655555444 24789999999999999
Q ss_pred EEEEcCCC-CCccccc------ccCCceeEecCCCCeEEEEEccCCCEEEEEEC-CCcEEEEECCCCcEEEEEcccCCCC
Q 003822 524 KLYDIRHM-PPSIRGM------HYGAGTVTFDEFDQLTSVHVNSMDELFLASGY-SKNIALYDINSGRRLQVFADMHKEH 595 (793)
Q Consensus 524 ~vWDl~~~-~~~~~~~------~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~-Dg~I~IWDl~tg~~l~~~~~gh~~~ 595 (793)
+.|.+.-. +...+.+ .++....-..|...+..+.. +.-..+++++. +..+++|.-...+++..+ ..+.
T Consensus 260 ~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i-~~w~~~Itttd~nre~k~w~~a~w~Cll~~---~~d~ 335 (1283)
T KOG1916|consen 260 GFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSI-GKWVLRITTTDVNREEKFWAEAPWQCLLDK---LIDG 335 (1283)
T ss_pred ceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCcc-ceeEEEEecccCCcceeEeeccchhhhhhh---cccc
Confidence 99987532 2211111 11111111111111111111 11123455553 578999988877766221 1233
Q ss_pred eEEEEEcCCCC-----------cEEEEEeCCCeEEEEECCC
Q 003822 596 INVVKFSNHSP-----------SIFATSSFDQDVKLWDLRQ 625 (793)
Q Consensus 596 V~sv~fspdg~-----------~~LaTgs~Dg~IrIWDlrt 625 (793)
|..|. -+++. ..+++.+.+++|++|--+.
T Consensus 336 v~iV~-p~~~~v~~~~~~~~~~~~~v~r~v~~~i~~~qn~~ 375 (1283)
T KOG1916|consen 336 VQIVG-PHDGEVTDLSMCQWMTTRLVSRSVDGTIKIWQNRK 375 (1283)
T ss_pred eEeec-CCCccccchhhhHHHHHHHHHhhhHHHHHHhhcch
Confidence 33333 22221 2245567788999996554
No 455
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=82.73 E-value=1 Score=57.09 Aligned_cols=79 Identities=16% Similarity=0.143 Sum_probs=45.6
Q ss_pred eeEeeccccccccc--ccccccceeeEEeeccccccccccccccccccccceeccccccchhhhHHHHHHhcCCccccee
Q 003822 127 CEVLNLRSSRFRKL--NMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELR 204 (793)
Q Consensus 127 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (793)
-++|+|+++.+... .-.|...+|.+|+|..+. ++..-..-|..|++|+.|+.-..++.. ....++++|++|++|.
T Consensus 166 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~ 242 (968)
T PLN00113 166 LKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQ-LVGQIPRELGQMKSLKWIYLGYNNLSG--EIPYEIGGLTSLNHLD 242 (968)
T ss_pred CCEEECccCcccccCChhhhhCcCCCeeeccCCC-CcCcCChHHcCcCCccEEECcCCccCC--cCChhHhcCCCCCEEE
Confidence 46677766655321 224566677777777543 333333456677777777665555432 2234566677777776
Q ss_pred ccee
Q 003822 205 FQNW 208 (793)
Q Consensus 205 ~~~~ 208 (793)
+..|
T Consensus 243 L~~n 246 (968)
T PLN00113 243 LVYN 246 (968)
T ss_pred CcCc
Confidence 6654
No 456
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=82.53 E-value=1.4e+02 Score=37.12 Aligned_cols=164 Identities=10% Similarity=0.045 Sum_probs=97.6
Q ss_pred cCCCCeEEEEEc---c---CCCEEEEEECCCcEEEEECCCC---------------cEEEEEcc--cCCCCeEEEEEcCC
Q 003822 548 DEFDQLTSVHVN---S---MDELFLASGYSKNIALYDINSG---------------RRLQVFAD--MHKEHINVVKFSNH 604 (793)
Q Consensus 548 ~~~~~V~sv~~s---~---~~~~lla~g~Dg~I~IWDl~tg---------------~~l~~~~~--gh~~~V~sv~fspd 604 (793)
....+|..|+|. . ....++++-....+.|+...-. .++..+.. .-..+...|+|+|.
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~ 156 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPW 156 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccC
Confidence 345778888886 2 1224666666677777772211 23344431 12235678999998
Q ss_pred CCcEEEEEeCCCeEEEEECCCC--CccceE------------EccCCCCeEEEEEecCCCEEEEEeCCCeEEEEEcCCCc
Q 003822 605 SPSIFATSSFDQDVKLWDLRQK--PIQPCY------------TASSSKGNVMVCFSPDDHYLLVSAVDNEVRQLLAVDGR 670 (793)
Q Consensus 605 g~~~LaTgs~Dg~IrIWDlrt~--~~~~~~------------~l~~~~~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~ 670 (793)
....||+-...|...|||+... ...... ......+...+.|.++...|++.+. ..+.++|+.+..
T Consensus 157 ~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r-~~l~~~d~~~~~ 235 (765)
T PF10214_consen 157 DQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNR-SKLMLIDFESNW 235 (765)
T ss_pred ccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcC-CceEEEECCCCC
Confidence 8889999999999999999211 101111 0111223336899999888888885 568899998876
Q ss_pred EEEEEeeecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCC
Q 003822 671 VHLNFGITATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQT 715 (793)
Q Consensus 671 ~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~t 715 (793)
....+. .......+..+.-++.+..+++.-.. ..| ...++.+
T Consensus 236 ~~~~l~-~~~~~~~IlDv~~~~~~~~~~FiLTs-~ei-iw~~~~~ 277 (765)
T PF10214_consen 236 QTEYLV-TAKTWSWILDVKRSPDNPSHVFILTS-KEI-IWLDVKS 277 (765)
T ss_pred ccchhc-cCCChhheeeEEecCCccceEEEEec-CeE-EEEEccC
Confidence 533221 22334567777777773333333322 455 4456655
No 457
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=82.51 E-value=50 Score=35.93 Aligned_cols=110 Identities=13% Similarity=0.121 Sum_probs=51.6
Q ss_pred CCCEEEEEeCC-----CeEEEEECCCCeEE---EEEeccCCCCCEEEEEEeeCCCCEEEEEEc-----CCcEEEEEcCCC
Q 003822 465 ISCLMVFGTLD-----GEIVVVNHENENIV---SYIPSFGAMNSVLGLCWLKKYPSKLIAGSD-----NGSLKLYDIRHM 531 (793)
Q Consensus 465 d~~~Lasgs~D-----G~I~VWd~~t~~~i---~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~-----DgtV~vWDl~~~ 531 (793)
++.+++.|+.+ ..+..+|+.+.+.. ..+........-.+++. .++.+.+.|+. ...+..||+.+.
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~--~~~~iYv~GG~~~~~~~~~v~~yd~~~~ 149 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACY--KDGTLYVGGGNRNGKPSNKSYLFNLETQ 149 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEE--ECCEEEEEeCcCCCccCceEEEEcCCCC
Confidence 34677777754 35667777665531 12111011111122232 25666677764 235777887765
Q ss_pred CCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCC----cEEEEECCCCcE
Q 003822 532 PPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSK----NIALYDINSGRR 584 (793)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg----~I~IWDl~tg~~ 584 (793)
+-. ........ .......+. -.+..++.+|.++ .+.+||..+.+-
T Consensus 150 ~W~--~~~~~p~~----~r~~~~~~~--~~~~iYv~GG~~~~~~~~~~~yd~~~~~W 198 (323)
T TIGR03548 150 EWF--ELPDFPGE----PRVQPVCVK--LQNELYVFGGGSNIAYTDGYKYSPKKNQW 198 (323)
T ss_pred Cee--ECCCCCCC----CCCcceEEE--ECCEEEEEcCCCCccccceEEEecCCCee
Confidence 432 11100000 001111122 2455666666543 356889887654
No 458
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=82.44 E-value=1.1 Score=57.73 Aligned_cols=76 Identities=21% Similarity=0.286 Sum_probs=56.9
Q ss_pred eEeecccc-cccccccccccceeeEEeeccccccccccccccccccccceeccccc-cchhhhHHHHHHhcCCcccceec
Q 003822 128 EVLNLRSS-RFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCET-RVGNLWTTIAALSKLPSLAELRF 205 (793)
Q Consensus 128 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 205 (793)
+.|+|+.+ .+..+.-.+..++|.+|+|..|.+++.++. .|..|++|..|.+... .+..| -.. ..|++|..|.|
T Consensus 637 k~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~-si~~L~~L~~L~L~~c~~L~~L---p~~-i~l~sL~~L~L 711 (1153)
T PLN03210 637 RNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPS-SIQYLNKLEDLDMSRCENLEIL---PTG-INLKSLYRLNL 711 (1153)
T ss_pred CEEECCCCCCcCcCCccccCCcccEEEecCCCCccccch-hhhccCCCCEEeCCCCCCcCcc---CCc-CCCCCCCEEeC
Confidence 56777644 456666667789999999999999999986 5899999999988652 22222 111 26899999999
Q ss_pred cee
Q 003822 206 QNW 208 (793)
Q Consensus 206 ~~~ 208 (793)
+.|
T Consensus 712 sgc 714 (1153)
T PLN03210 712 SGC 714 (1153)
T ss_pred CCC
Confidence 887
No 459
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=82.29 E-value=18 Score=41.53 Aligned_cols=78 Identities=15% Similarity=0.077 Sum_probs=49.6
Q ss_pred CeEEEEEcCCCCcEEEEEeCCCeEEEEECC---------CCCcc----------ceEEccCCCCeEEEEEecCC---CEE
Q 003822 595 HINVVKFSNHSPSIFATSSFDQDVKLWDLR---------QKPIQ----------PCYTASSSKGNVMVCFSPDD---HYL 652 (793)
Q Consensus 595 ~V~sv~fspdg~~~LaTgs~Dg~IrIWDlr---------t~~~~----------~~~~l~~~~~~vsv~fSpdg---~~L 652 (793)
.|..|..++.| ..++-.+.+|.+.++=.+ .++.. .+++-..+-....++|+|+. ..|
T Consensus 105 eV~~vl~s~~G-S~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL 183 (741)
T KOG4460|consen 105 EVYQVLLSPTG-SHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHL 183 (741)
T ss_pred EEEEEEecCCC-ceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceE
Confidence 46678889998 778878888876554322 12111 11111222222248999975 678
Q ss_pred EEEeCCCeEEEEEcCCCcEEE
Q 003822 653 LVSAVDNEVRQLLAVDGRVHL 673 (793)
Q Consensus 653 asgs~Dg~I~IwDl~tg~~~~ 673 (793)
..-+.|+.|++||+...+.+.
T Consensus 184 ~iL~sdnviRiy~lS~~tely 204 (741)
T KOG4460|consen 184 VLLTSDNVIRIYSLSEPTELY 204 (741)
T ss_pred EEEecCcEEEEEecCCcchhh
Confidence 888889999999988765543
No 460
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=82.17 E-value=15 Score=42.06 Aligned_cols=86 Identities=16% Similarity=0.172 Sum_probs=48.5
Q ss_pred cEEEEEeeCCCeEEEEEeCCCcEE-EE---EE----cCCCcEEEeeeecCCCCCccceeeeccCCccccCCccEEEEEEc
Q 003822 685 NYTRSYYLNGRDYIVSGSCDEHVV-RI---CC----AQTGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTR 756 (793)
Q Consensus 685 v~s~afspdg~~~L~Sgs~Dg~II-~I---WD----v~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~ 756 (793)
+..+..++.|. .++-.|.+|.+| .+ |- ++.|+..- ...--..+...|..+ -+-.+..++||
T Consensus 106 V~~vl~s~~GS-~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v--~CRt~~i~~~~ftss--------~~ltl~Qa~WH 174 (741)
T KOG4460|consen 106 VYQVLLSPTGS-HVALIGIKGLMVMELPKRWGKNSEFEDGKSTV--NCRTTPVAERFFTSS--------TSLTLKQAAWH 174 (741)
T ss_pred EEEEEecCCCc-eEEEecCCeeEEEEchhhcCccceecCCCceE--EEEeecccceeeccC--------Cceeeeecccc
Confidence 44556778888 777777888652 22 31 12333222 111111111111111 12368899999
Q ss_pred CCC--CceeeEeeEEEeCCCcEEEEcCCCCC
Q 003822 757 PSS--KSEIVKVNLLASTDHCDKECSHGQHS 785 (793)
Q Consensus 757 P~~--~~~iv~~~ltaS~Dg~VkvW~~~~~~ 785 (793)
|++ ...++ +-++|.+||+++.....
T Consensus 175 P~S~~D~hL~----iL~sdnviRiy~lS~~t 201 (741)
T KOG4460|consen 175 PSSILDPHLV----LLTSDNVIRIYSLSEPT 201 (741)
T ss_pred CCccCCceEE----EEecCcEEEEEecCCcc
Confidence 986 44455 67899999999987654
No 461
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.29 E-value=18 Score=45.87 Aligned_cols=29 Identities=24% Similarity=0.542 Sum_probs=25.5
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCC
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHEN 485 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t 485 (793)
+..++|+| ...++|.|+..|.|+++-...
T Consensus 38 ~~~~afD~-~q~llai~t~tg~i~~yg~~~ 66 (993)
T KOG1983|consen 38 PSALAFDP-TQGLLAIGTRTGAIKIYGQPG 66 (993)
T ss_pred Ccceeecc-ccceEEEEEecccEEEecccc
Confidence 66789999 888999999999999997653
No 462
>PLN02153 epithiospecifier protein
Probab=81.21 E-value=91 Score=34.24 Aligned_cols=109 Identities=8% Similarity=0.162 Sum_probs=53.1
Q ss_pred CCCEEEEEECC-----CcEEEEECCCCcEEE--EEcc---cCCCCeEEEEEcCCCCcEEEEEeCC-----------CeEE
Q 003822 561 MDELFLASGYS-----KNIALYDINSGRRLQ--VFAD---MHKEHINVVKFSNHSPSIFATSSFD-----------QDVK 619 (793)
Q Consensus 561 ~~~~lla~g~D-----g~I~IWDl~tg~~l~--~~~~---gh~~~V~sv~fspdg~~~LaTgs~D-----------g~Ir 619 (793)
.+..++.||.+ ..+.+||..+.+-.. .+.. .....-.+++. -++ ++++.|+.+ ..+.
T Consensus 85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~-~~~-~iyv~GG~~~~~~~~~~~~~~~v~ 162 (341)
T PLN02153 85 GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMAS-DEN-HVYVFGGVSKGGLMKTPERFRTIE 162 (341)
T ss_pred CCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEE-ECC-EEEEECCccCCCccCCCcccceEE
Confidence 44555666642 358889988765332 1110 00111112222 234 677777754 2477
Q ss_pred EEECCCCCccceEEcc---CCCCeEEEEEecCCCEEEEEeCC-------------CeEEEEEcCCCcEE
Q 003822 620 LWDLRQKPIQPCYTAS---SSKGNVMVCFSPDDHYLLVSAVD-------------NEVRQLLAVDGRVH 672 (793)
Q Consensus 620 IWDlrt~~~~~~~~l~---~~~~~vsv~fSpdg~~Lasgs~D-------------g~I~IwDl~tg~~~ 672 (793)
+||..+.....+.... ......+++ .-+++..+.|+.+ +.+.+||..+.+..
T Consensus 163 ~yd~~~~~W~~l~~~~~~~~~r~~~~~~-~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~ 230 (341)
T PLN02153 163 AYNIADGKWVQLPDPGENFEKRGGAGFA-VVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWT 230 (341)
T ss_pred EEECCCCeEeeCCCCCCCCCCCCcceEE-EECCeEEEEeccccccccCCccceecCceEEEEcCCCcEE
Confidence 8998876433221110 011111222 2355655555421 46888998877653
No 463
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=80.50 E-value=18 Score=41.41 Aligned_cols=160 Identities=18% Similarity=0.181 Sum_probs=92.3
Q ss_pred ccceEEEEEeCCCCCEEEE-EeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeC-------CCCEEEEEEcCCcEE
Q 003822 453 SFRPRQFEYHPSISCLMVF-GTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKK-------YPSKLIAGSDNGSLK 524 (793)
Q Consensus 453 ~~~V~~vafsP~d~~~Las-gs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~-------~g~~Lasgs~DgtV~ 524 (793)
...|..+-.|..+.+++.. |+.-..++-.|++.|+.+..+.. |.. | -|.|.|. ..+.|+ |-.+..|.
T Consensus 466 Sidp~K~mlh~~dssli~~dg~~~~kLykmDIErGkvveeW~~--~dd-v-vVqy~p~~kf~qmt~eqtlv-GlS~~svF 540 (776)
T COG5167 466 SIDPEKIMLHDNDSSLIYLDGGERDKLYKMDIERGKVVEEWDL--KDD-V-VVQYNPYFKFQQMTDEQTLV-GLSDYSVF 540 (776)
T ss_pred cCChhhceeecCCcceEEecCCCcccceeeecccceeeeEeec--CCc-c-eeecCCchhHHhcCccceEE-eecccceE
Confidence 3446666666656666654 55566788889999999988874 333 3 4556532 123444 44444554
Q ss_pred EEEcCCCCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCC
Q 003822 525 LYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNH 604 (793)
Q Consensus 525 vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspd 604 (793)
-.|.+.....+.... ...+.......+... ..++++++++..|.|++||--.-+....++ +....|..|..+.+
T Consensus 541 rIDPR~~gNKi~v~e----sKdY~tKn~Fss~~t-TesGyIa~as~kGDirLyDRig~rAKtalP-~lG~aIk~idvta~ 614 (776)
T COG5167 541 RIDPRARGNKIKVVE----SKDYKTKNKFSSGMT-TESGYIAAASRKGDIRLYDRIGKRAKTALP-GLGDAIKHIDVTAN 614 (776)
T ss_pred EecccccCCceeeee----ehhcccccccccccc-ccCceEEEecCCCceeeehhhcchhhhcCc-ccccceeeeEeecC
Confidence 445443221111000 001111111222222 357899999999999999966333333444 67788999999999
Q ss_pred CCcEEEEEeCCCeEEEEECCC
Q 003822 605 SPSIFATSSFDQDVKLWDLRQ 625 (793)
Q Consensus 605 g~~~LaTgs~Dg~IrIWDlrt 625 (793)
|..+|+|| ..++-+-|++-
T Consensus 615 Gk~ilaTC--k~yllL~d~~i 633 (776)
T COG5167 615 GKHILATC--KNYLLLTDVPI 633 (776)
T ss_pred CcEEEEee--cceEEEEeccc
Confidence 95455544 35677777764
No 464
>PLN02153 epithiospecifier protein
Probab=78.23 E-value=1.1e+02 Score=33.52 Aligned_cols=196 Identities=14% Similarity=0.079 Sum_probs=89.8
Q ss_pred CCCEEEEEeCC-------CeEEEEECCCCeEEEEEeccCCCC----CEEEEEEeeCCCCEEEEEEcC-----CcEEEEEc
Q 003822 465 ISCLMVFGTLD-------GEIVVVNHENENIVSYIPSFGAMN----SVLGLCWLKKYPSKLIAGSDN-----GSLKLYDI 528 (793)
Q Consensus 465 d~~~Lasgs~D-------G~I~VWd~~t~~~i~~l~~~~h~~----~V~sv~fs~~~g~~Lasgs~D-----gtV~vWDl 528 (793)
++.+++.|+.+ ..+.+||+.+.+....-....... ....+. .++.+++.|+.+ ..+.+||.
T Consensus 32 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~---~~~~iyv~GG~~~~~~~~~v~~yd~ 108 (341)
T PLN02153 32 GDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVA---VGTKLYIFGGRDEKREFSDFYSYDT 108 (341)
T ss_pred CCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEE---ECCEEEEECCCCCCCccCcEEEEEC
Confidence 34677777653 358889988765543221100000 122222 256677777753 24777887
Q ss_pred CCCCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEECC-----------CcEEEEECCCCcEEEEEccc----CC
Q 003822 529 RHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYS-----------KNIALYDINSGRRLQVFADM----HK 593 (793)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~D-----------g~I~IWDl~tg~~l~~~~~g----h~ 593 (793)
.+.+-. ........ .......-.+++. -.+..++.||.+ ..+.+||..+.+-...-..+ ..
T Consensus 109 ~t~~W~--~~~~~~~~-~~p~~R~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r 184 (341)
T PLN02153 109 VKNEWT--FLTKLDEE-GGPEARTFHSMAS-DENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKR 184 (341)
T ss_pred CCCEEE--EeccCCCC-CCCCCceeeEEEE-ECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCC
Confidence 764321 11100000 0000000112222 245556666643 24778898876533211100 01
Q ss_pred CCeEEEEEcCCCCcEEEEEeCC-------------CeEEEEECCCCCccceEEc---cCCCCeEEEEEecCCCEEEEEeC
Q 003822 594 EHINVVKFSNHSPSIFATSSFD-------------QDVKLWDLRQKPIQPCYTA---SSSKGNVMVCFSPDDHYLLVSAV 657 (793)
Q Consensus 594 ~~V~sv~fspdg~~~LaTgs~D-------------g~IrIWDlrt~~~~~~~~l---~~~~~~vsv~fSpdg~~Lasgs~ 657 (793)
.....+.+ ++ ++++.|+.+ ..+.+||..+.+...+... +......+ +...+++.++.|+.
T Consensus 185 ~~~~~~~~--~~-~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~-~~~~~~~iyv~GG~ 260 (341)
T PLN02153 185 GGAGFAVV--QG-KIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSVFA-HAVVGKYIIIFGGE 260 (341)
T ss_pred CcceEEEE--CC-eEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcceee-eEEECCEEEEECcc
Confidence 11112222 44 566655432 3588999888654433221 11111112 22234666666664
Q ss_pred C--------------CeEEEEEcCCCcE
Q 003822 658 D--------------NEVRQLLAVDGRV 671 (793)
Q Consensus 658 D--------------g~I~IwDl~tg~~ 671 (793)
. +.+..||..+.+.
T Consensus 261 ~~~~~~~~~~~~~~~n~v~~~d~~~~~W 288 (341)
T PLN02153 261 VWPDLKGHLGPGTLSNEGYALDTETLVW 288 (341)
T ss_pred cCCccccccccccccccEEEEEcCccEE
Confidence 1 2577888776654
No 465
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=78.18 E-value=12 Score=44.06 Aligned_cols=78 Identities=24% Similarity=0.235 Sum_probs=44.4
Q ss_pred cCCCEEEEEeCCCeEEEEEcCC----CcEEEEEeeecC-------------------CCCCcEEEEEee---CCCeEEEE
Q 003822 647 PDDHYLLVSAVDNEVRQLLAVD----GRVHLNFGITAT-------------------GSSQNYTRSYYL---NGRDYIVS 700 (793)
Q Consensus 647 pdg~~Lasgs~Dg~I~IwDl~t----g~~~~~l~~~~~-------------------~~~~v~s~afsp---dg~~~L~S 700 (793)
++...++++..||.+....... +........... ........+.++ ++..++++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 4667778888888877776553 222222211111 112334445554 24449999
Q ss_pred EeCCCcEEEEEEcCCCcEEEeeeec
Q 003822 701 GSCDEHVVRICCAQTGRRLRDISLE 725 (793)
Q Consensus 701 gs~Dg~II~IWDv~tg~~l~~~~L~ 725 (793)
.+.|+++ |+||+.+++++....+.
T Consensus 236 l~~D~~L-RiW~l~t~~~~~~~~~~ 259 (547)
T PF11715_consen 236 LSRDHTL-RIWSLETGQCLATIDLL 259 (547)
T ss_dssp EETTSEE-EEEETTTTCEEEEEETT
T ss_pred EeCCCeE-EEEECCCCeEEEEeccc
Confidence 9999999 99999999998844443
No 466
>PRK10115 protease 2; Provisional
Probab=77.98 E-value=1.8e+02 Score=35.64 Aligned_cols=111 Identities=14% Similarity=0.151 Sum_probs=66.4
Q ss_pred eEEEEEccCCCEEEEEEC-C----CcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeCC-----CeEEEEE
Q 003822 553 LTSVHVNSMDELFLASGY-S----KNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFD-----QDVKLWD 622 (793)
Q Consensus 553 V~sv~~s~~~~~lla~g~-D----g~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~D-----g~IrIWD 622 (793)
+..+.++|++..++.+.+ + ..|++.|+.+|..+..... .. -..++|.+++..++++...+ ..|+.++
T Consensus 129 l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~-~~--~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~ 205 (686)
T PRK10115 129 LGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLD-NV--EPSFVWANDSWTFYYVRKHPVTLLPYQVWRHT 205 (686)
T ss_pred EeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCcccc-Cc--ceEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence 556777777777776643 2 4588999998864332221 11 14699999985555554432 3588888
Q ss_pred CCCCC--ccceEEccCCCCeEEEEEecCCCEEEEEeC---CCeEEEEEc
Q 003822 623 LRQKP--IQPCYTASSSKGNVMVCFSPDDHYLLVSAV---DNEVRQLLA 666 (793)
Q Consensus 623 lrt~~--~~~~~~l~~~~~~vsv~fSpdg~~Lasgs~---Dg~I~IwDl 666 (793)
+.++. ...++.-......+.+..+.++++++..+. ++.+.+|+.
T Consensus 206 lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 206 IGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred CCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence 88873 333444222212223344558888776553 457888884
No 467
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=77.97 E-value=65 Score=30.64 Aligned_cols=107 Identities=4% Similarity=0.115 Sum_probs=64.4
Q ss_pred EccCCCEEEEEECCCcEEEEECCCC--------cEEEEEcccCCCCeEEEEEcC----CCCcEEEEEeCCCeEEEEECCC
Q 003822 558 VNSMDELFLASGYSKNIALYDINSG--------RRLQVFADMHKEHINVVKFSN----HSPSIFATSSFDQDVKLWDLRQ 625 (793)
Q Consensus 558 ~s~~~~~lla~g~Dg~I~IWDl~tg--------~~l~~~~~gh~~~V~sv~fsp----dg~~~LaTgs~Dg~IrIWDlrt 625 (793)
|....+.+++++..|.|.|++.... ..+..+. -...|++++-.+ ++...|+.|+.. .+-.||+..
T Consensus 6 fDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN--in~~italaaG~l~~~~~~D~LliGt~t-~llaYDV~~ 82 (136)
T PF14781_consen 6 FDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN--INQEITALAAGRLKPDDGRDCLLIGTQT-SLLAYDVEN 82 (136)
T ss_pred eCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE--CCCceEEEEEEecCCCCCcCEEEEeccc-eEEEEEccc
Confidence 4345567777888899999987643 2344454 556788876544 233677777754 689999988
Q ss_pred CCccceEEccCCCCeEEEEEe---c-CCCEEEEEeCCCeEEEEEcCCCc
Q 003822 626 KPIQPCYTASSSKGNVMVCFS---P-DDHYLLVSAVDNEVRQLLAVDGR 670 (793)
Q Consensus 626 ~~~~~~~~l~~~~~~vsv~fS---p-dg~~Lasgs~Dg~I~IwDl~tg~ 670 (793)
.. .++.-.-+.++.++.+- . ....+++|+ +..|.-||..-.+
T Consensus 83 N~--d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGG-ncsi~Gfd~~G~e 128 (136)
T PF14781_consen 83 NS--DLFYKEVPDGVNAIVIGKLGDIPSPLVIVGG-NCSIQGFDYEGNE 128 (136)
T ss_pred Cc--hhhhhhCccceeEEEEEecCCCCCcEEEECc-eEEEEEeCCCCcE
Confidence 63 33333344555554443 2 234444444 6677777754333
No 468
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=77.81 E-value=96 Score=36.06 Aligned_cols=157 Identities=17% Similarity=0.124 Sum_probs=81.5
Q ss_pred CCEEEEEE----CCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEECCCCCccceEEccCC
Q 003822 562 DELFLASG----YSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSS 637 (793)
Q Consensus 562 ~~~lla~g----~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~ 637 (793)
++..++.+ ..+...++|.. |.....+.. .......+...++| .+++..+ +.++.+|+-. +....+.+++.
T Consensus 114 ~gl~~~~~~~~~~~~~~~~iD~~-G~Vrw~~~~-~~~~~~~~~~l~nG-~ll~~~~--~~~~e~D~~G-~v~~~~~l~~~ 187 (477)
T PF05935_consen 114 DGLYFVNGNDWDSSSYTYLIDNN-GDVRWYLPL-DSGSDNSFKQLPNG-NLLIGSG--NRLYEIDLLG-KVIWEYDLPGG 187 (477)
T ss_dssp T-EEEEEETT--BEEEEEEEETT-S-EEEEE-G-GGT--SSEEE-TTS--EEEEEB--TEEEEE-TT---EEEEEE--TT
T ss_pred CcEEEEeCCCCCCCceEEEECCC-ccEEEEEcc-CccccceeeEcCCC-CEEEecC--CceEEEcCCC-CEEEeeecCCc
Confidence 34444444 34667777766 666655542 11111116677888 5555444 7888999865 33344555442
Q ss_pred CCeE--EEEEecCCCEEEEEeC-------------CCeEEEEEcCCCcEEEEEeeecCC----C----------------
Q 003822 638 KGNV--MVCFSPDDHYLLVSAV-------------DNEVRQLLAVDGRVHLNFGITATG----S---------------- 682 (793)
Q Consensus 638 ~~~v--sv~fSpdg~~Lasgs~-------------Dg~I~IwDl~tg~~~~~l~~~~~~----~---------------- 682 (793)
.... .+...|+|++|+.+.. ...|..+| .+|+.+..+.....- .
T Consensus 188 ~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~ 266 (477)
T PF05935_consen 188 YYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGG 266 (477)
T ss_dssp EE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SST
T ss_pred ccccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCC
Confidence 1111 3778899999988872 23467778 888887776532110 0
Q ss_pred ----CCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCC
Q 003822 683 ----SQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKG 728 (793)
Q Consensus 683 ----~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~ 728 (793)
..+.++.+.+.+..+++|+-.-..| ...|..+++... .+..+.
T Consensus 267 ~~DW~H~Nsi~yd~~dd~iivSsR~~s~V-~~Id~~t~~i~W--ilg~~~ 313 (477)
T PF05935_consen 267 GRDWLHINSIDYDPSDDSIIVSSRHQSAV-IKIDYRTGKIKW--ILGPPG 313 (477)
T ss_dssp TSBS--EEEEEEETTTTEEEEEETTT-EE-EEEE-TTS-EEE--EES-ST
T ss_pred CCCccccCccEEeCCCCeEEEEcCcceEE-EEEECCCCcEEE--EeCCCC
Confidence 1345677888555366666655567 788889999988 777665
No 469
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=77.48 E-value=1 Score=53.93 Aligned_cols=122 Identities=19% Similarity=0.109 Sum_probs=58.6
Q ss_pred CCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcccccccCCceeEe--cCCCC
Q 003822 475 DGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTF--DEFDQ 552 (793)
Q Consensus 475 DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~~~~~~~~~~~~~--~~~~~ 552 (793)
.+-+++-|..+.-....+ ..+..+.|-.+.|-..+...+. -.-|.+.|||+.--+..+... -.++. .....
T Consensus 110 ~~~vrvaN~~~sm~~~~l-~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~----l~v~~~~p~gs~ 182 (1283)
T KOG1916|consen 110 ENGVRVANQEPSMRHNEL-AKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQ----LEVTPITPYGSD 182 (1283)
T ss_pred hhhhhhccCcchhHHHHH-HhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccc----eEEeecCcCCCC
Confidence 345777766543221111 1266778888887433322332 334678899986422111000 00000 01122
Q ss_pred eEEEEEc---cCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCC
Q 003822 553 LTSVHVN---SMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHS 605 (793)
Q Consensus 553 V~sv~~s---~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg 605 (793)
+.-|.|. +..-++..+-.+++|++..+.+... ..+. +|...+..++|-..|
T Consensus 183 ~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~r-sHs~~~~d~a~~~~g 236 (1283)
T KOG1916|consen 183 PQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFR-SHSQRVTDMAFFAEG 236 (1283)
T ss_pred cceeeecccccccceeeeccCCCceeEeeechHHH-HHHH-hcCCCcccHHHHhhc
Confidence 2333333 3333333334578888877765332 3344 487777776654444
No 470
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=77.33 E-value=1.3 Score=28.09 Aligned_cols=22 Identities=32% Similarity=0.457 Sum_probs=17.7
Q ss_pred eeeEEeeccccccccccccccccc
Q 003822 148 RIHTLNLDYSTSLTSFKEDCFSCM 171 (793)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~ 171 (793)
+|+.|+|.+| .||.|+.+ |..|
T Consensus 1 ~L~~Ldls~n-~l~~ip~~-~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGN-NLTSIPSS-FSNL 22 (22)
T ss_dssp TESEEEETSS-EESEEGTT-TTT-
T ss_pred CccEEECCCC-cCEeCChh-hcCC
Confidence 5788999988 99999988 7653
No 471
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=75.96 E-value=74 Score=30.26 Aligned_cols=112 Identities=13% Similarity=0.205 Sum_probs=64.9
Q ss_pred EEeCCCCCEEEEEeCCCeEEEEECCCC--------eEEEEEeccCCCCCEEEEEEeeC----CCCEEEEEEcCCcEEEEE
Q 003822 460 EYHPSISCLMVFGTLDGEIVVVNHENE--------NIVSYIPSFGAMNSVLGLCWLKK----YPSKLIAGSDNGSLKLYD 527 (793)
Q Consensus 460 afsP~d~~~Lasgs~DG~I~VWd~~t~--------~~i~~l~~~~h~~~V~sv~fs~~----~g~~Lasgs~DgtV~vWD 527 (793)
.|.. ....|++++..|.|.|++.... ..+..+. -...|++++--+- ..+.|+.|+. .++..||
T Consensus 5 kfDG-~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN---in~~italaaG~l~~~~~~D~LliGt~-t~llaYD 79 (136)
T PF14781_consen 5 KFDG-VHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN---INQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYD 79 (136)
T ss_pred EeCC-CceeEEEEecCCEEEEECCCccccccccccCceeEEE---CCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEE
Confidence 4555 4457888999999999987633 2344443 3457888764432 2456777765 5899999
Q ss_pred cCCCCCcccccccCCceeEecCCCCeEEEEEcc---CCCEEEEEECCCcEEEEECCCCcEEE
Q 003822 528 IRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNS---MDELFLASGYSKNIALYDINSGRRLQ 586 (793)
Q Consensus 528 l~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~---~~~~lla~g~Dg~I~IWDl~tg~~l~ 586 (793)
+....... .-.-.+.|.++.+-. ....++..|.+..|.-||..-.+...
T Consensus 80 V~~N~d~F----------yke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fW 131 (136)
T PF14781_consen 80 VENNSDLF----------YKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFW 131 (136)
T ss_pred cccCchhh----------hhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEE
Confidence 98754421 111224556665532 23345555545566666655433333
No 472
>PLN02193 nitrile-specifier protein
Probab=75.56 E-value=1.6e+02 Score=34.04 Aligned_cols=193 Identities=12% Similarity=0.116 Sum_probs=91.7
Q ss_pred CCEEEEEeCC-------CeEEEEECCCCeEEEEEeccC-CCC--C-EEEEEEeeCCCCEEEEEEcC-----CcEEEEEcC
Q 003822 466 SCLMVFGTLD-------GEIVVVNHENENIVSYIPSFG-AMN--S-VLGLCWLKKYPSKLIAGSDN-----GSLKLYDIR 529 (793)
Q Consensus 466 ~~~Lasgs~D-------G~I~VWd~~t~~~i~~l~~~~-h~~--~-V~sv~fs~~~g~~Lasgs~D-----gtV~vWDl~ 529 (793)
+.+++.|+.+ ..+.+||+.+.+... +...+ ... . -.+++. .++.+.+.|+.+ ..+..||+.
T Consensus 176 ~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~-~~~~g~~P~~~~~~~~~v~--~~~~lYvfGG~~~~~~~ndv~~yD~~ 252 (470)
T PLN02193 176 NKIYSFGGEFTPNQPIDKHLYVFDLETRTWSI-SPATGDVPHLSCLGVRMVS--IGSTLYVFGGRDASRQYNGFYSFDTT 252 (470)
T ss_pred CEEEEECCcCCCCCCeeCcEEEEECCCCEEEe-CCCCCCCCCCcccceEEEE--ECCEEEEECCCCCCCCCccEEEEECC
Confidence 4567777743 347788988766542 21111 011 0 112222 355666777654 347778877
Q ss_pred CCCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEECC-----CcEEEEECCCCcEEEEEcc----cCCCCeEEEE
Q 003822 530 HMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYS-----KNIALYDINSGRRLQVFAD----MHKEHINVVK 600 (793)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~D-----g~I~IWDl~tg~~l~~~~~----gh~~~V~sv~ 600 (793)
+.+-............. .. .++.. -.+..++.+|.+ ..+..||+.+.+-...-.. ........+.
T Consensus 253 t~~W~~l~~~~~~P~~R----~~-h~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~ 326 (470)
T PLN02193 253 TNEWKLLTPVEEGPTPR----SF-HSMAA-DEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEV 326 (470)
T ss_pred CCEEEEcCcCCCCCCCc----cc-eEEEE-ECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEE
Confidence 64321111000000000 11 12222 244556666643 3477888887653321100 0111111222
Q ss_pred EcCCCCcEEEEEeCC----CeEEEEECCCCCccceEEc---cCCCCeEEEEEecCCCEEEEEeCC--------------C
Q 003822 601 FSNHSPSIFATSSFD----QDVKLWDLRQKPIQPCYTA---SSSKGNVMVCFSPDDHYLLVSAVD--------------N 659 (793)
Q Consensus 601 fspdg~~~LaTgs~D----g~IrIWDlrt~~~~~~~~l---~~~~~~vsv~fSpdg~~Lasgs~D--------------g 659 (793)
+ ++ ++++.++.+ ..+.+||+.+.+...+... +......+ +..-+++.++.|+.. +
T Consensus 327 ~--~g-kiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n 402 (470)
T PLN02193 327 V--QG-KVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFA-SAAVGKHIVIFGGEIAMDPLAHVGPGQLTD 402 (470)
T ss_pred E--CC-cEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeE-EEEECCEEEEECCccCCccccccCccceec
Confidence 2 44 677777765 4589999988654433221 11111112 222356666666642 2
Q ss_pred eEEEEEcCCCcE
Q 003822 660 EVRQLLAVDGRV 671 (793)
Q Consensus 660 ~I~IwDl~tg~~ 671 (793)
.+.+||+.+.+.
T Consensus 403 dv~~~D~~t~~W 414 (470)
T PLN02193 403 GTFALDTETLQW 414 (470)
T ss_pred cEEEEEcCcCEE
Confidence 478899887765
No 473
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=75.55 E-value=61 Score=37.34 Aligned_cols=109 Identities=9% Similarity=0.105 Sum_probs=61.1
Q ss_pred CCCeEEEEEcCCCCcEEEEEeCCCeEEEEECCCCCccceEEc------cCCCCeEEEEEecCC------CEEEEEe----
Q 003822 593 KEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTA------SSSKGNVMVCFSPDD------HYLLVSA---- 656 (793)
Q Consensus 593 ~~~V~sv~fspdg~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l------~~~~~~vsv~fSpdg------~~Lasgs---- 656 (793)
-...+.++|.|+| .+|++--..|.|++++..+.....+..+ .+..+...++++|+- ++|++..
T Consensus 29 L~~Pw~maflPDG-~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~ 107 (454)
T TIGR03606 29 LNKPWALLWGPDN-QLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKN 107 (454)
T ss_pred CCCceEEEEcCCC-eEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccC
Confidence 4567899999998 7777665579999998665432222211 134566779999874 3555542
Q ss_pred ------CCCeEEEEEcCCC--cE---EEEEeeec-CCCCCcEEEEEeeCCCeEEEEEe
Q 003822 657 ------VDNEVRQLLAVDG--RV---HLNFGITA-TGSSQNYTRSYYLNGRDYIVSGS 702 (793)
Q Consensus 657 ------~Dg~I~IwDl~tg--~~---~~~l~~~~-~~~~~v~s~afspdg~~~L~Sgs 702 (793)
....|.-|.+... .. ...+...+ ...+.--.++|.|||..||.+|.
T Consensus 108 ~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD 165 (454)
T TIGR03606 108 GDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGE 165 (454)
T ss_pred CCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECC
Confidence 1234444544321 11 11122111 12234557789999984444444
No 474
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=75.13 E-value=2e+02 Score=34.77 Aligned_cols=253 Identities=13% Similarity=0.113 Sum_probs=133.9
Q ss_pred EEEEeCCCCCEEEEEeCCCeEEEEEC-CCCeEEEEEeccCCCCCEEEEEEeeCCC--CEEEEEEcC-CcEEEEEcCCCCC
Q 003822 458 QFEYHPSISCLMVFGTLDGEIVVVNH-ENENIVSYIPSFGAMNSVLGLCWLKKYP--SKLIAGSDN-GSLKLYDIRHMPP 533 (793)
Q Consensus 458 ~vafsP~d~~~Lasgs~DG~I~VWd~-~t~~~i~~l~~~~h~~~V~sv~fs~~~g--~~Lasgs~D-gtV~vWDl~~~~~ 533 (793)
+..++| +.+.+-.|=....|.-|=+ .+.+.+..++. ..+..|.|+.....++ ...+.|-.+ +.-++-.+..+..
T Consensus 32 s~~~s~-~sn~IdiGIS~S~ISsYIi~PTPKLiwsypi-~pt~iV~~~dV~~~~~~~~~~~~glt~rKk~~ll~i~~~~~ 109 (670)
T PF10395_consen 32 SDDFSP-DSNQIDIGISGSAISSYIIKPTPKLIWSYPI-SPTTIVECCDVLEKSDGKKLYCVGLTERKKFKLLLIERKVG 109 (670)
T ss_pred ecccCC-CCceEEEEeccchhhheecCCCcceeEeecc-CcCceEEEEEeEecCCCcEEEEEEEeeCCeeEEEEEEccCc
Confidence 346777 6666666655555655544 35677777766 3456788877543322 244444344 3345555544311
Q ss_pred -cccccc--cCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCc--EEEEEcccCCCCeEEEEEcC-----
Q 003822 534 -SIRGMH--YGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGR--RLQVFADMHKEHINVVKFSN----- 603 (793)
Q Consensus 534 -~~~~~~--~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~--~l~~~~~gh~~~V~sv~fsp----- 603 (793)
...... .........-.+.|.+|.+.+.+..+++.-.+|.|.+||...+. .+..+...++..+.--.|-+
T Consensus 110 ~~~~~~~~~e~~~~~~~kl~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~ 189 (670)
T PF10395_consen 110 STEDGTVNSETTNEFELKLDDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELE 189 (670)
T ss_pred cccccccCccccceEEEEcccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccc
Confidence 000000 01112233445789999998889999999999999999994322 21133222333221112222
Q ss_pred CCCcEEEEEeC-C---CeEEEEECCCCCccceEEcc----CCCCeEE--EEEecCCCEEEEEeCCCeEEEEEcCCCcEEE
Q 003822 604 HSPSIFATSSF-D---QDVKLWDLRQKPIQPCYTAS----SSKGNVM--VCFSPDDHYLLVSAVDNEVRQLLAVDGRVHL 673 (793)
Q Consensus 604 dg~~~LaTgs~-D---g~IrIWDlrt~~~~~~~~l~----~~~~~vs--v~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~ 673 (793)
++..++++-+. + -..+++.+... ..++..+. ...+... ++|. +|. |+.- .++.|.+|++.+-+...
T Consensus 190 ~~~~~ll~v~~~~~~k~~ykL~~l~~~-~~~~~El~s~~~e~~~~~~s~f~Y~-~G~-LY~l-~~~~i~~ysip~f~~~~ 265 (670)
T PF10395_consen 190 NGKDLLLTVSQLSNSKLSYKLISLSNE-SSSIFELSSTILENFGLEDSKFCYQ-FGK-LYQL-SKKTISSYSIPNFQIQK 265 (670)
T ss_pred cCCceEEEEEEcCCCcEEEEEEEeccC-CcceEEeehheeccCCcccceEEEe-CCE-EEEE-eCCEEEEEEcCCceEEE
Confidence 22244544443 3 23788888221 12222221 1111112 4444 454 3333 57899999999988888
Q ss_pred EEeeecCCCC---CcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEE
Q 003822 674 NFGITATGSS---QNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRLR 720 (793)
Q Consensus 674 ~l~~~~~~~~---~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~ 720 (793)
++.....-.. .++++.--..++ .|++ .+..| ++.|+.-...+.
T Consensus 266 tI~l~~ii~~~~~~~vSl~~~s~nR-vLLs--~~nkI-yLld~~~~siLs 311 (670)
T PF10395_consen 266 TISLPSIIDKESDDLVSLKPPSPNR-VLLS--VNNKI-YLLDLKFESILS 311 (670)
T ss_pred EEEechhhccccccceEeecCCCCe-EEEE--cCCEE-EEEeehhhhhhh
Confidence 8776422221 333333222333 5554 34577 999998777776
No 475
>smart00446 LRRcap occurring C-terminal to leucine-rich repeats. A motif occurring C-terminal to leucine-rich repeats in "sds22-like" and "typical" LRR-containing proteins.
Probab=74.87 E-value=1.9 Score=28.67 Aligned_cols=20 Identities=45% Similarity=0.793 Sum_probs=17.7
Q ss_pred hhhhHHHhhcccccccCCcc
Q 003822 337 HYRDYMIASLPKLKFLDNLP 356 (793)
Q Consensus 337 ~~r~~~is~L~~L~~L~n~~ 356 (793)
.||++++..||+|+.||...
T Consensus 3 ~YR~~Vi~~LPqL~~LD~~~ 22 (26)
T smart00446 3 HYREKVIRLLPQLRKLDXXX 22 (26)
T ss_pred cHHHHHHHHCCccceecccc
Confidence 69999999999999998643
No 476
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=74.82 E-value=2e+02 Score=34.71 Aligned_cols=171 Identities=13% Similarity=0.188 Sum_probs=88.1
Q ss_pred CCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcc--cccccCCceeEecCCCCeEEEEEccCCCEEEEEEC-C---
Q 003822 498 MNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSI--RGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY-S--- 571 (793)
Q Consensus 498 ~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~--~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~-D--- 571 (793)
.+.|.+|.|. .+++.+++...+|.|.+||...+.... .....+...+.+. ..|.....-..+..+++.+. +
T Consensus 129 ~~kvv~Ik~~-~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys--~fv~~~~~~~~~~~ll~v~~~~~~k 205 (670)
T PF10395_consen 129 DDKVVGIKFS-SDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYS--KFVNDFELENGKDLLLTVSQLSNSK 205 (670)
T ss_pred ccceEEEEEe-cCCCEEEEEEcCCcEEEEeccccccccccccccccccceehh--hhhcccccccCCceEEEEEEcCCCc
Confidence 5689999997 788999999999999999993322211 1111111112221 22222222122345555443 2
Q ss_pred CcEEEEECC-CCcEEEEEc--ccCCCCeEEEEEcC-CCCcEEEEEeCCCeEEEEECCCCCccceEEcc----CC-CCeEE
Q 003822 572 KNIALYDIN-SGRRLQVFA--DMHKEHINVVKFSN-HSPSIFATSSFDQDVKLWDLRQKPIQPCYTAS----SS-KGNVM 642 (793)
Q Consensus 572 g~I~IWDl~-tg~~l~~~~--~gh~~~V~sv~fsp-dg~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~----~~-~~~vs 642 (793)
-..+++.+. ....+..+. ..+........|.- +| .+..- .+++|.+|++..-+......++ .. ...++
T Consensus 206 ~~ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G-~LY~l--~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vS 282 (670)
T PF10395_consen 206 LSYKLISLSNESSSIFELSSTILENFGLEDSKFCYQFG-KLYQL--SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVS 282 (670)
T ss_pred EEEEEEEeccCCcceEEeehheeccCCcccceEEEeCC-EEEEE--eCCEEEEEEcCCceEEEEEEechhhccccccceE
Confidence 346777771 122222221 01222222223332 34 33333 6779999999776544444443 11 12333
Q ss_pred EEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEe
Q 003822 643 VCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFG 676 (793)
Q Consensus 643 v~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~ 676 (793)
+. .|..+.++.+. ++.|++.|+.-...+.+++
T Consensus 283 l~-~~s~nRvLLs~-~nkIyLld~~~~siLse~~ 314 (670)
T PF10395_consen 283 LK-PPSPNRVLLSV-NNKIYLLDLKFESILSEFE 314 (670)
T ss_pred ee-cCCCCeEEEEc-CCEEEEEeehhhhhhhhhh
Confidence 22 23344444444 5789999987766665554
No 477
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=74.58 E-value=1.6e+02 Score=33.44 Aligned_cols=144 Identities=9% Similarity=0.052 Sum_probs=72.7
Q ss_pred EEEEEccCCCEEEEEECCCcEEE-EECCCCcEE-EEEcccCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEECCCCCcc--
Q 003822 554 TSVHVNSMDELFLASGYSKNIAL-YDINSGRRL-QVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQ-- 629 (793)
Q Consensus 554 ~sv~~s~~~~~lla~g~Dg~I~I-WDl~tg~~l-~~~~~gh~~~V~sv~fspdg~~~LaTgs~Dg~IrIWDlrt~~~~-- 629 (793)
..+...++ +.+++.+..|.+.. ||- |... ..........++++.|.+++ .+++++ .+|.+. |....+..-
T Consensus 242 ~~v~~~~d-G~~~~vg~~G~~~~s~d~--G~~~W~~~~~~~~~~l~~v~~~~dg-~l~l~g-~~G~l~-~S~d~G~~~~~ 315 (398)
T PLN00033 242 STVNRSPD-GDYVAVSSRGNFYLTWEP--GQPYWQPHNRASARRIQNMGWRADG-GLWLLT-RGGGLY-VSKGTGLTEED 315 (398)
T ss_pred eeEEEcCC-CCEEEEECCccEEEecCC--CCcceEEecCCCccceeeeeEcCCC-CEEEEe-CCceEE-EecCCCCcccc
Confidence 33444333 44555555554433 332 2221 11121345678899999888 555544 566543 333333211
Q ss_pred -ceEEccC---CCCeEEEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCCCeEEEEEeCCC
Q 003822 630 -PCYTASS---SKGNVMVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNGRDYIVSGSCDE 705 (793)
Q Consensus 630 -~~~~l~~---~~~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg 705 (793)
....... ......+.|.+++..+++|. .|.+... ...|+.-.............+.+.|.++++ ....+.+|
T Consensus 316 ~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~-~G~v~~s-~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~--g~~~G~~G 391 (398)
T PLN00033 316 FDFEEADIKSRGFGILDVGYRSKKEAWAAGG-SGILLRS-TDGGKSWKRDKGADNIAANLYSVKFFDDKK--GFVLGNDG 391 (398)
T ss_pred cceeecccCCCCcceEEEEEcCCCcEEEEEC-CCcEEEe-CCCCcceeEccccCCCCcceeEEEEcCCCc--eEEEeCCc
Confidence 1122221 12355688988887665554 6766544 344544222221112234567777777765 44555778
Q ss_pred cE
Q 003822 706 HV 707 (793)
Q Consensus 706 ~I 707 (793)
.|
T Consensus 392 ~i 393 (398)
T PLN00033 392 VL 393 (398)
T ss_pred EE
Confidence 77
No 478
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=74.58 E-value=17 Score=37.61 Aligned_cols=65 Identities=12% Similarity=0.133 Sum_probs=45.5
Q ss_pred cCCCEEEEEECCCcEEEEECCCCcEEEEE------cc-------cCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEECCCC
Q 003822 560 SMDELFLASGYSKNIALYDINSGRRLQVF------AD-------MHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQK 626 (793)
Q Consensus 560 ~~~~~lla~g~Dg~I~IWDl~tg~~l~~~------~~-------gh~~~V~sv~fspdg~~~LaTgs~Dg~IrIWDlrt~ 626 (793)
..+.++++...+|.+++||+.+++.+..- -. .....|..+.++.+| .-+++-+ +|....||..-+
T Consensus 20 ~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G-~PiV~ls-ng~~y~y~~~L~ 97 (219)
T PF07569_consen 20 CNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNG-VPIVTLS-NGDSYSYSPDLG 97 (219)
T ss_pred eCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCC-CEEEEEe-CCCEEEeccccc
Confidence 57889999999999999999998765432 11 244567777777776 4555444 466777776554
No 479
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=74.05 E-value=43 Score=35.24 Aligned_cols=140 Identities=14% Similarity=0.083 Sum_probs=75.1
Q ss_pred EEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeC-C--CeEEEEECCCCCccc-eEE----ccCCCCeE-EEE
Q 003822 574 IALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSF-D--QDVKLWDLRQKPIQP-CYT----ASSSKGNV-MVC 644 (793)
Q Consensus 574 I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~-D--g~IrIWDlrt~~~~~-~~~----l~~~~~~v-sv~ 644 (793)
-.+||+.+++... +.-.......+-.+-++| .++.+|+. + ..+++++.-...... ... +.. ..+. ++.
T Consensus 48 s~~yD~~tn~~rp-l~v~td~FCSgg~~L~dG-~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~-~RWYpT~~ 124 (243)
T PF07250_consen 48 SVEYDPNTNTFRP-LTVQTDTFCSGGAFLPDG-RLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQS-GRWYPTAT 124 (243)
T ss_pred EEEEecCCCcEEe-ccCCCCCcccCcCCCCCC-CEEEeCCCCccccceEEEecCCCCCCCCceECcccccC-CCccccce
Confidence 4578998876432 221133334445678898 88888876 3 348888865411011 111 111 1222 466
Q ss_pred EecCCCEEEEEeCCCe-EEEEEcCC-CcEEEEEeeec----CCCCCcE-EEEEeeCCCeEEEEEeCCCcEEEEEEcCCCc
Q 003822 645 FSPDDHYLLVSAVDNE-VRQLLAVD-GRVHLNFGITA----TGSSQNY-TRSYYLNGRDYIVSGSCDEHVVRICCAQTGR 717 (793)
Q Consensus 645 fSpdg~~Lasgs~Dg~-I~IwDl~t-g~~~~~l~~~~----~~~~~v~-s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~ 717 (793)
--|||+.|+.|+..+. ..+|.... +.....+.... .....-+ .+...|+|+ +++.+..++ .|||..+.+
T Consensus 125 ~L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~-lFi~an~~s---~i~d~~~n~ 200 (243)
T PF07250_consen 125 TLPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGN-LFIFANRGS---IIYDYKTNT 200 (243)
T ss_pred ECCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCC-EEEEEcCCc---EEEeCCCCe
Confidence 6789999999987653 34444321 11111111111 0111122 344568888 666666543 578999998
Q ss_pred EEE
Q 003822 718 RLR 720 (793)
Q Consensus 718 ~l~ 720 (793)
.++
T Consensus 201 v~~ 203 (243)
T PF07250_consen 201 VVR 203 (243)
T ss_pred EEe
Confidence 777
No 480
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=73.33 E-value=23 Score=36.57 Aligned_cols=76 Identities=13% Similarity=0.116 Sum_probs=47.2
Q ss_pred CCCCEEEEEEcCCcEEEEEcCCCCCcccccccCCceeEe------cCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCC
Q 003822 509 KYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTF------DEFDQLTSVHVNSMDELFLASGYSKNIALYDINSG 582 (793)
Q Consensus 509 ~~g~~Lasgs~DgtV~vWDl~~~~~~~~~~~~~~~~~~~------~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg 582 (793)
..++++++...+|.+++||+.+++.......-. ..... .....|..+.++..|--++ .-.+|..+.||..-+
T Consensus 20 ~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~-pll~~~~~~~~~~~~~i~~~~lt~~G~PiV-~lsng~~y~y~~~L~ 97 (219)
T PF07569_consen 20 CNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIA-PLLNSSPVSDKSSSPNITSCSLTSNGVPIV-TLSNGDSYSYSPDLG 97 (219)
T ss_pred eCCCEEEEEeCCCeEEEEECCCCeeccCCccHH-HHhcccccccCCCCCcEEEEEEcCCCCEEE-EEeCCCEEEeccccc
Confidence 467899999999999999999977643331100 00000 2335577888865544444 444577888887755
Q ss_pred cEEE
Q 003822 583 RRLQ 586 (793)
Q Consensus 583 ~~l~ 586 (793)
.-+.
T Consensus 98 ~W~~ 101 (219)
T PF07569_consen 98 CWIR 101 (219)
T ss_pred eeEE
Confidence 4443
No 481
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=73.27 E-value=1.5e+02 Score=32.52 Aligned_cols=146 Identities=15% Similarity=0.220 Sum_probs=85.8
Q ss_pred CCeEEEEEccCCCEEEEEECCCc------EEEEECCC--C--cEEE-----EEcccCCC-------CeEEEEEcCCCCcE
Q 003822 551 DQLTSVHVNSMDELFLASGYSKN------IALYDINS--G--RRLQ-----VFADMHKE-------HINVVKFSNHSPSI 608 (793)
Q Consensus 551 ~~V~sv~~s~~~~~lla~g~Dg~------I~IWDl~t--g--~~l~-----~~~~gh~~-------~V~sv~fspdg~~~ 608 (793)
+.+.++.+.+.++.+++.+++|. +..+++.. + ..+. .+...... ..-+|++.+++ .+
T Consensus 20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g-~~ 98 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDG-SF 98 (326)
T ss_pred CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCC-CE
Confidence 66788899878889999998887 66666554 1 1111 11111111 33478886666 67
Q ss_pred EEEEeCC------CeEEEEECCCCCccceEEcc--------------CCCCeEEEEEecCCCEEEEEeC-----CC----
Q 003822 609 FATSSFD------QDVKLWDLRQKPIQPCYTAS--------------SSKGNVMVCFSPDDHYLLVSAV-----DN---- 659 (793)
Q Consensus 609 LaTgs~D------g~IrIWDlrt~~~~~~~~l~--------------~~~~~vsv~fSpdg~~Lasgs~-----Dg---- 659 (793)
+++.-.+ ..|+.+|.. +.....+.++ ...+.=.++++|+|+.|+++.. |+
T Consensus 99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~ 177 (326)
T PF13449_consen 99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRAN 177 (326)
T ss_pred EEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcccc
Confidence 7766666 778888876 3322222111 2223336999999997776642 22
Q ss_pred -------eEEEEEcCC-CcEEEEEeeecC------CCCCcEEEEEeeCCCeEEE
Q 003822 660 -------EVRQLLAVD-GRVHLNFGITAT------GSSQNYTRSYYLNGRDYIV 699 (793)
Q Consensus 660 -------~I~IwDl~t-g~~~~~l~~~~~------~~~~v~s~afspdg~~~L~ 699 (793)
.|..||..+ ++....+..... ....+..+.+-++++ +++
T Consensus 178 ~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~-lLv 230 (326)
T PF13449_consen 178 PDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGR-LLV 230 (326)
T ss_pred cccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCc-EEE
Confidence 233455554 433444433333 356677888889988 544
No 482
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=72.84 E-value=0.74 Score=53.34 Aligned_cols=50 Identities=34% Similarity=0.482 Sum_probs=42.3
Q ss_pred Eeeccccccccccc-ccccceeeEEeeccccccccccccccccccccceeccc
Q 003822 129 VLNLRSSRFRKLNM-IGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMC 180 (793)
Q Consensus 129 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (793)
-|||+++.+.+||| .|++-+|+||||. -..+|+++ +|---+|+|++|-.-
T Consensus 249 rLNLS~N~iteL~~~~~~W~~lEtLNlS-rNQLt~LP-~avcKL~kL~kLy~n 299 (1255)
T KOG0444|consen 249 RLNLSGNKITELNMTEGEWENLETLNLS-RNQLTVLP-DAVCKLTKLTKLYAN 299 (1255)
T ss_pred eeccCcCceeeeeccHHHHhhhhhhccc-cchhccch-HHHhhhHHHHHHHhc
Confidence 47999999999999 6999999999999 56789887 577778888887543
No 483
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=72.24 E-value=1.9e+02 Score=36.45 Aligned_cols=174 Identities=11% Similarity=0.109 Sum_probs=93.5
Q ss_pred eEEEEECCCCeEEEEEeccCC--CCCEEEEEEeeCCCC-EEEEEEc-----------CCcEEEEEcCCCCCcccccccCC
Q 003822 477 EIVVVNHENENIVSYIPSFGA--MNSVLGLCWLKKYPS-KLIAGSD-----------NGSLKLYDIRHMPPSIRGMHYGA 542 (793)
Q Consensus 477 ~I~VWd~~t~~~i~~l~~~~h--~~~V~sv~fs~~~g~-~Lasgs~-----------DgtV~vWDl~~~~~~~~~~~~~~ 542 (793)
.|++.|..+++.+..+..... .-.|.++.|+..+.. ++++|.. +|.++.|++-....
T Consensus 854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~--------- 924 (1205)
T KOG1898|consen 854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGD--------- 924 (1205)
T ss_pred eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCc---------
Confidence 488888888877766654222 235667777644444 3333322 23344554432221
Q ss_pred ceeEecCC----CCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcccC-CCCeEEEEEcCCCCcEEEEEeCCCe
Q 003822 543 GTVTFDEF----DQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMH-KEHINVVKFSNHSPSIFATSSFDQD 617 (793)
Q Consensus 543 ~~~~~~~~----~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh-~~~V~sv~fspdg~~~LaTgs~Dg~ 617 (793)
...+-|. ++|.+++ |..+.++ +|-...+++||+...++++.....+ ...|..+.+. + ..++.|...-.
T Consensus 925 -~lellh~T~~~~~v~Ai~--~f~~~~L-agvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~--~-~RI~VgD~qeS 997 (1205)
T KOG1898|consen 925 -KLELLHKTEIPGPVGAIC--PFQGRVL-AGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTY--G-ARIVVGDIQES 997 (1205)
T ss_pred -eeeeeeccCCCccceEEe--ccCCEEE-EecccEEEEeeCChHHHHhhhhhccCceEEEEEeec--c-eEEEEeeccce
Confidence 1222222 3444444 6666554 4556889999999887776655323 5567777774 3 45666665545
Q ss_pred EEEEECCC--CCccceEEccCCCCeEEEEEecCCCEEEEEeCCCeEEEEEcC
Q 003822 618 VKLWDLRQ--KPIQPCYTASSSKGNVMVCFSPDDHYLLVSAVDNEVRQLLAV 667 (793)
Q Consensus 618 IrIWDlrt--~~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~ 667 (793)
|.++-.+. .+.. ++.-..-...+...+--|-..+|.|..=|.+.+..+.
T Consensus 998 V~~~~y~~~~n~l~-~fadD~~pR~Vt~~~~lD~~tvagaDrfGNi~~vR~P 1048 (1205)
T KOG1898|consen 998 VHFVRYRREDNQLI-VFADDPVPRHVTALELLDYDTVAGADRFGNIAVVRIP 1048 (1205)
T ss_pred EEEEEEecCCCeEE-EEeCCCccceeeEEEEecCCceeeccccCcEEEEECC
Confidence 55544443 3222 2222222223334444456667777777776665543
No 484
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=70.80 E-value=55 Score=36.01 Aligned_cols=107 Identities=17% Similarity=0.246 Sum_probs=56.0
Q ss_pred CeEEEEEcCCCCcEEEEEeCCCeEEEEECCCCCc-cceEEc-----cCCCCeEEEEEecC---CCEEEEEeC-C------
Q 003822 595 HINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPI-QPCYTA-----SSSKGNVMVCFSPD---DHYLLVSAV-D------ 658 (793)
Q Consensus 595 ~V~sv~fspdg~~~LaTgs~Dg~IrIWDlrt~~~-~~~~~l-----~~~~~~vsv~fSpd---g~~Lasgs~-D------ 658 (793)
..+.++|.|+| .++++ ...|.|++++ ..+.. ..+... .+..+...++++|+ ..+|++... .
T Consensus 3 ~P~~~a~~pdG-~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~ 79 (331)
T PF07995_consen 3 NPRSMAFLPDG-RLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGD 79 (331)
T ss_dssp SEEEEEEETTS-CEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSS
T ss_pred CceEEEEeCCC-cEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCC
Confidence 46789999998 66664 6699999999 33322 222222 23445567999994 344444433 1
Q ss_pred --CeEEEEEcCCC--c---EEEEEeeec---CCCCCcEEEEEeeCCCeEEEEEeCCC
Q 003822 659 --NEVRQLLAVDG--R---VHLNFGITA---TGSSQNYTRSYYLNGRDYIVSGSCDE 705 (793)
Q Consensus 659 --g~I~IwDl~tg--~---~~~~l~~~~---~~~~~v~s~afspdg~~~L~Sgs~Dg 705 (793)
..|.-|....+ . ....+...+ ...+....++|.|||. +.++.++.+
T Consensus 80 ~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~-LYvs~G~~~ 135 (331)
T PF07995_consen 80 NDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGK-LYVSVGDGG 135 (331)
T ss_dssp EEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSE-EEEEEB-TT
T ss_pred cceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCc-EEEEeCCCC
Confidence 24444544433 1 111111112 2345566799999997 444444433
No 485
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=70.45 E-value=2.7e+02 Score=34.41 Aligned_cols=68 Identities=13% Similarity=0.091 Sum_probs=46.2
Q ss_pred CCeEEEEEcCCCCcEEEEEeCCCeEEEEECCCCCccceE------------------EccCCCCeEEEEEecCCCEEEEE
Q 003822 594 EHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCY------------------TASSSKGNVMVCFSPDDHYLLVS 655 (793)
Q Consensus 594 ~~V~sv~fspdg~~~LaTgs~Dg~IrIWDlrt~~~~~~~------------------~l~~~~~~vsv~fSpdg~~Lasg 655 (793)
+.|.++....-+ .+++..-.||+|.++|..+.+..... .++.-.....++|||.+-.++.-
T Consensus 260 ~~V~si~~~~~~-~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~ 338 (753)
T PF11635_consen 260 KRVVSITSPELD-IVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQI 338 (753)
T ss_pred CeEEEEEecccC-cEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEE
Confidence 456677776666 78999999999999998775322111 11111112237899999888888
Q ss_pred eCCCeEE
Q 003822 656 AVDNEVR 662 (793)
Q Consensus 656 s~Dg~I~ 662 (793)
..+|.+.
T Consensus 339 ~~~~~~~ 345 (753)
T PF11635_consen 339 DEDGKTK 345 (753)
T ss_pred ecCCCce
Confidence 8888865
No 486
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=70.26 E-value=1.9e+02 Score=32.37 Aligned_cols=13 Identities=15% Similarity=0.289 Sum_probs=9.5
Q ss_pred cEEEEECCCCcEE
Q 003822 573 NIALYDINSGRRL 585 (793)
Q Consensus 573 ~I~IWDl~tg~~l 585 (793)
.+.+||..+.+-.
T Consensus 190 ~v~~YD~~t~~W~ 202 (376)
T PRK14131 190 EVLSYDPSTNQWK 202 (376)
T ss_pred eEEEEECCCCeee
Confidence 5888998876543
No 487
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=69.92 E-value=1.8e+02 Score=32.21 Aligned_cols=197 Identities=13% Similarity=0.093 Sum_probs=105.7
Q ss_pred CEEEEEEcCCcEEEEEcCCCCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEccc
Q 003822 512 SKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADM 591 (793)
Q Consensus 512 ~~Lasgs~DgtV~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~g 591 (793)
..++++..+|.|.-.|.+++.......... ....+.+-.+ -.++.+++++.++.++.+|.++|+.+.....
T Consensus 69 g~v~~~~~~G~i~A~d~~~g~~~W~~~~~~-------~~~~~~~~~~-~~~G~i~~g~~~g~~y~ld~~~G~~~W~~~~- 139 (370)
T COG1520 69 GTVYVGTRDGNIFALNPDTGLVKWSYPLLG-------AVAQLSGPIL-GSDGKIYVGSWDGKLYALDASTGTLVWSRNV- 139 (370)
T ss_pred CeEEEecCCCcEEEEeCCCCcEEecccCcC-------cceeccCceE-EeCCeEEEecccceEEEEECCCCcEEEEEec-
Confidence 456666788888888888876432221111 0001111111 1267788888899999999999999988873
Q ss_pred CC-CCeEEEEEcCCCCcEEEEEeCCCeEEEEECCCCCccceEEccCCCC-eEEEEEe--cCCCEEEEEeC--CCeEEEEE
Q 003822 592 HK-EHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKG-NVMVCFS--PDDHYLLVSAV--DNEVRQLL 665 (793)
Q Consensus 592 h~-~~V~sv~fspdg~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~~~-~vsv~fS--pdg~~Lasgs~--Dg~I~IwD 665 (793)
.. -.+..-..-.++ .+..++.++.+.-.|..++.. ......... ......+ .....++.+.. ++.+.-.|
T Consensus 140 ~~~~~~~~~~v~~~~--~v~~~s~~g~~~al~~~tG~~--~W~~~~~~~~~~~~~~~~~~~~~~vy~~~~~~~~~~~a~~ 215 (370)
T COG1520 140 GGSPYYASPPVVGDG--TVYVGTDDGHLYALNADTGTL--KWTYETPAPLSLSIYGSPAIASGTVYVGSDGYDGILYALN 215 (370)
T ss_pred CCCeEEecCcEEcCc--EEEEecCCCeEEEEEccCCcE--EEEEecCCccccccccCceeecceEEEecCCCcceEEEEE
Confidence 33 111222222233 344444678888777777633 222111110 0011111 12333455544 56677788
Q ss_pred cCCCcEEEEEeeecCCCC-------CcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEEeeee
Q 003822 666 AVDGRVHLNFGITATGSS-------QNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRLRDISL 724 (793)
Q Consensus 666 l~tg~~~~~l~~~~~~~~-------~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L 724 (793)
..+|.............. .+..-...-++. +..++.++.+ .-.|..+|+.+..+..
T Consensus 216 ~~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--~~~~~~~g~~-~~l~~~~G~~~W~~~~ 278 (370)
T COG1520 216 AEDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGG--VYAGSYGGKL-LCLDADTGELIWSFPA 278 (370)
T ss_pred ccCCcEeeeeeeecccCcccccccccccCceEEECCc--EEEEecCCeE-EEEEcCCCceEEEEec
Confidence 888877665432111111 111111122332 4677778877 8889999999985444
No 488
>PLN03150 hypothetical protein; Provisional
Probab=69.26 E-value=4 Score=49.06 Aligned_cols=84 Identities=20% Similarity=0.282 Sum_probs=56.3
Q ss_pred cCCceee-----------Eeecccccccc--cccccccceeeEEeeccccccccccccccccccccceeccccccchhhh
Q 003822 122 QRGLMCE-----------VLNLRSSRFRK--LNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLW 188 (793)
Q Consensus 122 ~~~~~~~-----------~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (793)
-.|+.|. .|+|+++.+.- -.-.+.+.+|.+|+|..+ .++..-...|..|++|+.|..-..++...
T Consensus 404 w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N-~l~g~iP~~~~~l~~L~~LdLs~N~lsg~- 481 (623)
T PLN03150 404 WSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGN-SIRGNIPPSLGSITSLEVLDLSYNSFNGS- 481 (623)
T ss_pred cccceeeccCCCCceEEEEEECCCCCccccCCHHHhCCCCCCEEECCCC-cccCcCChHHhCCCCCCEEECCCCCCCCC-
Confidence 4678883 35565554421 112456678999999964 56644455688999999998877665422
Q ss_pred HHHHHHhcCCcccceeccee
Q 003822 189 TTIAALSKLPSLAELRFQNW 208 (793)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~ 208 (793)
.-..+.+|++|++|.+..+
T Consensus 482 -iP~~l~~L~~L~~L~Ls~N 500 (623)
T PLN03150 482 -IPESLGQLTSLRILNLNGN 500 (623)
T ss_pred -CchHHhcCCCCCEEECcCC
Confidence 2356889999999987654
No 489
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=68.95 E-value=72 Score=36.75 Aligned_cols=100 Identities=15% Similarity=0.119 Sum_probs=59.0
Q ss_pred CEEEEEECCCcEEEEECCC-CcEEEEEc--c-cCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEECCCCCccceEEccCCC
Q 003822 563 ELFLASGYSKNIALYDINS-GRRLQVFA--D-MHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSK 638 (793)
Q Consensus 563 ~~lla~g~Dg~I~IWDl~t-g~~l~~~~--~-gh~~~V~sv~fspdg~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~~ 638 (793)
..-++|-++..|.-.|.+. |..+.... . .......+..-...| ++|.||..|.||+||.-..... ..+++-.
T Consensus 528 eqtlvGlS~~svFrIDPR~~gNKi~v~esKdY~tKn~Fss~~tTesG--yIa~as~kGDirLyDRig~rAK--talP~lG 603 (776)
T COG5167 528 EQTLVGLSDYSVFRIDPRARGNKIKVVESKDYKTKNKFSSGMTTESG--YIAAASRKGDIRLYDRIGKRAK--TALPGLG 603 (776)
T ss_pred cceEEeecccceEEecccccCCceeeeeehhccccccccccccccCc--eEEEecCCCceeeehhhcchhh--hcCcccc
Confidence 3445566677777777764 43333222 1 011222333333344 8999999999999996543222 2233333
Q ss_pred C-eEEEEEecCCCEEEEEeCCCeEEEEEcC
Q 003822 639 G-NVMVCFSPDDHYLLVSAVDNEVRQLLAV 667 (793)
Q Consensus 639 ~-~vsv~fSpdg~~Lasgs~Dg~I~IwDl~ 667 (793)
. +..+..+.+|+++++.+. ..+.+-|++
T Consensus 604 ~aIk~idvta~Gk~ilaTCk-~yllL~d~~ 632 (776)
T COG5167 604 DAIKHIDVTANGKHILATCK-NYLLLTDVP 632 (776)
T ss_pred cceeeeEeecCCcEEEEeec-ceEEEEecc
Confidence 3 335888999999988884 566666653
No 490
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=68.93 E-value=1.7e+02 Score=32.67 Aligned_cols=14 Identities=14% Similarity=0.183 Sum_probs=10.0
Q ss_pred eEEEEECCCCCccc
Q 003822 617 DVKLWDLRQKPIQP 630 (793)
Q Consensus 617 ~IrIWDlrt~~~~~ 630 (793)
.+.+||..+.....
T Consensus 190 ~v~~YD~~t~~W~~ 203 (376)
T PRK14131 190 EVLSYDPSTNQWKN 203 (376)
T ss_pred eEEEEECCCCeeeE
Confidence 58899988765443
No 491
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=68.22 E-value=4.3 Score=27.34 Aligned_cols=24 Identities=29% Similarity=0.548 Sum_probs=20.7
Q ss_pred ccceeEEeccCCchhhHHHHHhhc
Q 003822 99 DQKLRVVDLHDSSFGKDFIRNLSQ 122 (793)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~ 122 (793)
|.+|+..||+++.||.+=.+-|++
T Consensus 1 n~~L~~LdL~~N~i~~~G~~~L~~ 24 (28)
T smart00368 1 NPSLRELDLSNNKLGDEGARALAE 24 (28)
T ss_pred CCccCEEECCCCCCCHHHHHHHHH
Confidence 678999999999999988777654
No 492
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=67.18 E-value=2e+02 Score=31.52 Aligned_cols=42 Identities=10% Similarity=0.025 Sum_probs=21.3
Q ss_pred CeEEEEECCCCCccceEEccCCCCeEEEEEecCCCEEEEEeC
Q 003822 616 QDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLVSAV 657 (793)
Q Consensus 616 g~IrIWDlrt~~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs~ 657 (793)
..+.+||..+.+...+-.++...........-+++..+.|+.
T Consensus 168 ~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~ 209 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGE 209 (346)
T ss_pred ceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEeee
Confidence 468899988865544333321111111122335676777664
No 493
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=66.92 E-value=1.1e+02 Score=33.47 Aligned_cols=43 Identities=5% Similarity=-0.098 Sum_probs=21.9
Q ss_pred CeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcC
Q 003822 476 GEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDN 520 (793)
Q Consensus 476 G~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~D 520 (793)
..+.+||..+.+....-........-.+++. .++++.+.|+.+
T Consensus 168 ~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~--~~~~iyv~GG~~ 210 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLGENPFLGTAGSAIVH--KGNKLLLINGEI 210 (346)
T ss_pred ceEEEEECCCCceeECccCCCCcCCCceEEE--ECCEEEEEeeee
Confidence 4688999887665432221110111223332 356777777653
No 494
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=65.89 E-value=2.1e+02 Score=36.01 Aligned_cols=139 Identities=13% Similarity=0.067 Sum_probs=69.7
Q ss_pred EEEEECCCCcEEEEEcccC---CCCeEEEEEcCCCCc-EEEEEeC-----------CCeEEEEECCCCCccceEEccCCC
Q 003822 574 IALYDINSGRRLQVFADMH---KEHINVVKFSNHSPS-IFATSSF-----------DQDVKLWDLRQKPIQPCYTASSSK 638 (793)
Q Consensus 574 I~IWDl~tg~~l~~~~~gh---~~~V~sv~fspdg~~-~LaTgs~-----------Dg~IrIWDlrt~~~~~~~~l~~~~ 638 (793)
|++.|..+++.+..+..+. .-.|..+.|+..... ++++|.. +|.++.|++-..... ..+-++.
T Consensus 855 I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~--lellh~T 932 (1205)
T KOG1898|consen 855 IRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDK--LELLHKT 932 (1205)
T ss_pred EEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCce--eeeeecc
Confidence 6677777776665554111 123556667655433 3333332 233555554332111 1121222
Q ss_pred CeE--EEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCCCeEEEEEeCCCcE-EEEEEcCC
Q 003822 639 GNV--MVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNGRDYIVSGSCDEHV-VRICCAQT 715 (793)
Q Consensus 639 ~~v--sv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~I-I~IWDv~t 715 (793)
.+. -.+..|-+.++++|- ...+++||+...++++..+... -...+..+. ..+. .|+.|.....+ ...|+-..
T Consensus 933 ~~~~~v~Ai~~f~~~~Lagv-G~~l~~YdlG~K~lLRk~e~k~-~p~~Is~iq--t~~~-RI~VgD~qeSV~~~~y~~~~ 1007 (1205)
T KOG1898|consen 933 EIPGPVGAICPFQGRVLAGV-GRFLRLYDLGKKKLLRKCELKF-IPNRISSIQ--TYGA-RIVVGDIQESVHFVRYRRED 1007 (1205)
T ss_pred CCCccceEEeccCCEEEEec-ccEEEEeeCChHHHHhhhhhcc-CceEEEEEe--ecce-EEEEeeccceEEEEEEecCC
Confidence 222 267778777777665 5689999999888776654322 111222222 2344 56666554444 24454444
Q ss_pred CcEE
Q 003822 716 GRRL 719 (793)
Q Consensus 716 g~~l 719 (793)
.+.+
T Consensus 1008 n~l~ 1011 (1205)
T KOG1898|consen 1008 NQLI 1011 (1205)
T ss_pred CeEE
Confidence 4443
No 495
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.78 E-value=2.5e+02 Score=32.17 Aligned_cols=141 Identities=9% Similarity=0.110 Sum_probs=78.1
Q ss_pred CCeEEEEECCC--CeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcccccccCCceeEecCCCC
Q 003822 475 DGEIVVVNHEN--ENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQ 552 (793)
Q Consensus 475 DG~I~VWd~~t--~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~~~~~~~~~~~~~~~~~~ 552 (793)
.|.+.=|-+.. ......+.. ...++|.++.|+ +|.+.+|+--.|.+|.+++....+........+ ......
T Consensus 42 SggatgvvvkgpndDVpiSfdm-~d~G~I~SIkFS-lDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~c-----k~k~~~ 114 (657)
T KOG2377|consen 42 SGGATGVVVKGPNDDVPISFDM-DDKGEIKSIKFS-LDNKILAVQRTSKTVDFCNFIPDNSQLEYTQEC-----KTKNAN 114 (657)
T ss_pred cCCeeEEEEeCCCCCCCceeee-cCCCceeEEEec-cCcceEEEEecCceEEEEecCCCchhhHHHHHh-----ccCcce
Confidence 34455554432 222223332 346799999998 788999999999999999985544322111100 011133
Q ss_pred eEEEEEccCCCEEEEEECCCcEEEEECCCC-cEEEEEcccCCCCeEEEEEcCCCCcEEEEEe-CCCeEEEEECCC
Q 003822 553 LTSVHVNSMDELFLASGYSKNIALYDINSG-RRLQVFADMHKEHINVVKFSNHSPSIFATSS-FDQDVKLWDLRQ 625 (793)
Q Consensus 553 V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg-~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs-~Dg~IrIWDlrt 625 (793)
|.+..|... ..++... +..+-+|-.... +.++..+ .|...|+=-.|.++..-.+.+.+ ..+++.=+-+++
T Consensus 115 IlGF~W~~s-~e~A~i~-~~G~e~y~v~pekrslRlVk-s~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~ 186 (657)
T KOG2377|consen 115 ILGFCWTSS-TEIAFIT-DQGIEFYQVLPEKRSLRLVK-SHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRA 186 (657)
T ss_pred eEEEEEecC-eeEEEEe-cCCeEEEEEchhhhhhhhhh-hcccCccEEEEccccceEeeeccccccccccEEEee
Confidence 777777444 3333333 333555554432 2334444 47788888889988733333333 344444444444
No 496
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=65.53 E-value=0.91 Score=51.10 Aligned_cols=147 Identities=11% Similarity=0.194 Sum_probs=95.5
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCE-EEEEEcCCcEEEEEcCCCCCc
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSK-LIAGSDNGSLKLYDIRHMPPS 534 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~-Lasgs~DgtV~vWDl~~~~~~ 534 (793)
+-...|-|.+.+ ++.++.+..+..||-. ++....+ .-++....++|- .+++. ++.+-..+.+.+||+.+....
T Consensus 37 pi~~~w~~e~~n-lavaca~tiv~~YD~a-gq~~le~---n~tg~aldm~wD-kegdvlavlAek~~piylwd~n~eytq 110 (615)
T KOG2247|consen 37 PIIHRWRPEGHN-LAVACANTIVIYYDKA-GQVILEL---NPTGKALDMAWD-KEGDVLAVLAEKTGPIYLWDVNSEYTQ 110 (615)
T ss_pred cceeeEecCCCc-eehhhhhhHHHhhhhh-cceeccc---CCchhHhhhhhc-cccchhhhhhhcCCCeeechhhhhhHH
Confidence 445678885555 7777778889999854 4444333 234567788886 46554 455667889999999875432
Q ss_pred ccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeC
Q 003822 535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSF 614 (793)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~ 614 (793)
.....+. ..-.-+.|++....++.+-..|.+.|++..+.+.+...- .|...+++++|.+.+ +.+.++.
T Consensus 111 qLE~gg~---------~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~G-kh~RRgtq~av~lEd--~vil~dc 178 (615)
T KOG2247|consen 111 QLESGGT---------SSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMG-KHQRRGTQIAVTLED--YVILCDC 178 (615)
T ss_pred HHhccCc---------chHHHHhhccCCccccccccccceEEEeccchhhhhhhc-ccccceeEEEecccc--eeeecCc
Confidence 1111110 000114555555566666678999999988877665553 399999999999987 5666766
Q ss_pred CCeEEE
Q 003822 615 DQDVKL 620 (793)
Q Consensus 615 Dg~IrI 620 (793)
|..+.+
T Consensus 179 d~~L~v 184 (615)
T KOG2247|consen 179 DNTLSV 184 (615)
T ss_pred HHHHHH
Confidence 655444
No 497
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=64.68 E-value=2.2e+02 Score=31.07 Aligned_cols=240 Identities=14% Similarity=0.082 Sum_probs=102.6
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEEC-CCCeEEEE--EeccC-CCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCC
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNH-ENENIVSY--IPSFG-AMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHM 531 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~-~t~~~i~~--l~~~~-h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~ 531 (793)
+..|+|.. ...-+++|. .|.| +.. +.|+-=.. ..... -.-...+|.|. +...+++ +..+. .+...+.+
T Consensus 19 l~dV~F~d-~~~G~~VG~-~g~i--l~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~--~~~g~iv-G~~g~-ll~T~DgG 90 (302)
T PF14870_consen 19 LLDVAFVD-PNHGWAVGA-YGTI--LKTTDGGKTWQPVSLDLDNPFDYHLNSISFD--GNEGWIV-GEPGL-LLHTTDGG 90 (302)
T ss_dssp EEEEEESS-SS-EEEEET-TTEE--EEESSTTSS-EE-----S-----EEEEEEEE--TTEEEEE-EETTE-EEEESSTT
T ss_pred eEEEEEec-CCEEEEEec-CCEE--EEECCCCccccccccCCCccceeeEEEEEec--CCceEEE-cCCce-EEEecCCC
Confidence 78889985 556666665 4543 333 32321111 11101 01236677774 3344444 44553 23333333
Q ss_pred CCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEE
Q 003822 532 PPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFAT 611 (793)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaT 611 (793)
+. ........ .-......+....+ +....++..|.|+. -...|+.=+.+...-.+.+..+.-+++| .++++
T Consensus 91 ~t-W~~v~l~~-----~lpgs~~~i~~l~~-~~~~l~~~~G~iy~-T~DgG~tW~~~~~~~~gs~~~~~r~~dG-~~vav 161 (302)
T PF14870_consen 91 KT-WERVPLSS-----KLPGSPFGITALGD-GSAELAGDRGAIYR-TTDGGKTWQAVVSETSGSINDITRSSDG-RYVAV 161 (302)
T ss_dssp SS--EE----T-----T-SS-EEEEEEEET-TEEEEEETT--EEE-ESSTTSSEEEEE-S----EEEEEE-TTS--EEEE
T ss_pred CC-cEEeecCC-----CCCCCeeEEEEcCC-CcEEEEcCCCcEEE-eCCCCCCeeEcccCCcceeEeEEECCCC-cEEEE
Confidence 32 22211000 00112223333222 34444455554432 2222332222222356778899999999 78887
Q ss_pred EeCCCeEEEEECCCCCccceEEccCCCCeEEEEEecCCCEEEEEeCCCeEEEEEcC-CCcEEEEEeeec--CCCCCcEEE
Q 003822 612 SSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLVSAVDNEVRQLLAV-DGRVHLNFGITA--TGSSQNYTR 688 (793)
Q Consensus 612 gs~Dg~IrIWDlrt~~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~-tg~~~~~l~~~~--~~~~~v~s~ 688 (793)
++......-||.-.....+. .......+-++.|.|++...+++ ..|.|+.=+.. .+..... ...+ .....+..+
T Consensus 162 s~~G~~~~s~~~G~~~w~~~-~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~-~~~~~~~~~~~~ld~ 238 (302)
T PF14870_consen 162 SSRGNFYSSWDPGQTTWQPH-NRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSE-PIIPIKTNGYGILDL 238 (302)
T ss_dssp ETTSSEEEEE-TT-SS-EEE-E--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE----B-TTSS--S-EEEE
T ss_pred ECcccEEEEecCCCccceEE-ccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCcccccc-ccCCcccCceeeEEE
Confidence 77666667888654333332 22234455569999998876655 78888877622 2222111 1111 233457888
Q ss_pred EEeeCCCeEEEEEeCCCcEEEEEEcCCCcEE
Q 003822 689 SYYLNGRDYIVSGSCDEHVVRICCAQTGRRL 719 (793)
Q Consensus 689 afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l 719 (793)
+|.+++. ..++ +..|.+ +.....|+.=
T Consensus 239 a~~~~~~-~wa~-gg~G~l--~~S~DgGktW 265 (302)
T PF14870_consen 239 AYRPPNE-IWAV-GGSGTL--LVSTDGGKTW 265 (302)
T ss_dssp EESSSS--EEEE-ESTT-E--EEESSTTSS-
T ss_pred EecCCCC-EEEE-eCCccE--EEeCCCCccc
Confidence 9998887 4444 455555 4444555443
No 498
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=64.66 E-value=32 Score=24.69 Aligned_cols=41 Identities=17% Similarity=0.173 Sum_probs=0.0
Q ss_pred cCCCEEEEEeC-CCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEe
Q 003822 647 PDDHYLLVSAV-DNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYY 691 (793)
Q Consensus 647 pdg~~Lasgs~-Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afs 691 (793)
|++++|+++.. ++.|.++|..+++.+..+. .......++|+
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~----vg~~P~~i~~~ 42 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIP----VGGYPFGVAVS 42 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEE----CCCCCceEEeC
No 499
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.54 E-value=3.4e+02 Score=33.00 Aligned_cols=168 Identities=11% Similarity=0.119 Sum_probs=81.3
Q ss_pred CeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEc---ccCCCCeEEEEEcCCCCcEEEEEeCCCeE-EEEECCCCC
Q 003822 552 QLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFA---DMHKEHINVVKFSNHSPSIFATSSFDQDV-KLWDLRQKP 627 (793)
Q Consensus 552 ~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~---~gh~~~V~sv~fspdg~~~LaTgs~Dg~I-rIWDlrt~~ 627 (793)
.+-.+.| +.+..+++...+|++++|++-. ..+.... ......|....+...| -.+. ..+|.+ .+-+.....
T Consensus 85 ~lI~mgW-s~~eeLI~v~k~g~v~Vy~~~g-e~ie~~svg~e~~~~~I~ec~~f~~G-Vavl--t~~g~v~~i~~~~~~~ 159 (829)
T KOG2280|consen 85 ELIGMGW-SDDEELICVQKDGTVHVYGLLG-EFIESNSVGFESQMSDIVECRFFHNG-VAVL--TVSGQVILINGVEEPK 159 (829)
T ss_pred Ceeeecc-cCCceEEEEeccceEEEeecch-hhhcccccccccccCceeEEEEecCc-eEEE--ecCCcEEEEcCCCcch
Confidence 5677888 5788889999999999999873 3222211 1122334444444455 3333 333443 333333321
Q ss_pred ccceEEccCCCCe-EE-EEEecCCCEEEEEeCCCe--EEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCCCeEEEEEeC
Q 003822 628 IQPCYTASSSKGN-VM-VCFSPDDHYLLVSAVDNE--VRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNGRDYIVSGSC 703 (793)
Q Consensus 628 ~~~~~~l~~~~~~-vs-v~fSpdg~~Lasgs~Dg~--I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~ 703 (793)
.......+...-. .+ -.+.|..........+-. ..++-...+.. ..... ...+..+..++.+|+.+ +|+--..
T Consensus 160 ~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~-q~~~~-~~~~~~~~ki~VS~n~~-~laLyt~ 236 (829)
T KOG2280|consen 160 LRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRV-QLHAL-SWPNSSVVKISVSPNRR-FLALYTE 236 (829)
T ss_pred hhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccc-ccccc-CCCCceEEEEEEcCCcc-eEEEEec
Confidence 1111111111111 11 122232111111111100 01222121111 11111 12345677888899988 9999999
Q ss_pred CCcEEEEEEcCCCcEEEeeeecCCC
Q 003822 704 DEHVVRICCAQTGRRLRDISLEGKG 728 (793)
Q Consensus 704 Dg~II~IWDv~tg~~l~~~~L~gh~ 728 (793)
+|.+ .+-++...+.+..+.+..|.
T Consensus 237 ~G~i-~~vs~D~~~~lce~~~~~~~ 260 (829)
T KOG2280|consen 237 TGKI-WVVSIDLSQILCEFNCTDHD 260 (829)
T ss_pred CCcE-EEEecchhhhhhccCCCCCC
Confidence 9998 88888888877733333443
No 500
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.30 E-value=1.3e+02 Score=34.35 Aligned_cols=122 Identities=14% Similarity=0.170 Sum_probs=73.6
Q ss_pred CCCCeEEEEEcCCCCcEEEEEeCCCeEEEEECCCCCccceEE--ccCCCC-eEEEEEecCCCEEEEEeCCCeEEEEEcCC
Q 003822 592 HKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYT--ASSSKG-NVMVCFSPDDHYLLVSAVDNEVRQLLAVD 668 (793)
Q Consensus 592 h~~~V~sv~fspdg~~~LaTgs~Dg~IrIWDlrt~~~~~~~~--l~~~~~-~vsv~fSpdg~~Lasgs~Dg~I~IwDl~t 668 (793)
..++|.++.|++|. +.+|.--.|.+|.+++....+...... .+.... +....|+.+ .-+|..+..| +-+|-...
T Consensus 65 d~G~I~SIkFSlDn-kilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~p 141 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDN-KILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLP 141 (657)
T ss_pred CCCceeEEEeccCc-ceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEch
Confidence 56799999999999 899999999999999985443232222 222222 345888866 4456555444 56665443
Q ss_pred CcEEEEEeeecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcE
Q 003822 669 GRVHLNFGITATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRR 718 (793)
Q Consensus 669 g~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~ 718 (793)
.+. .+..-..+...+.-..|.++..-.+++.+-.++++.=+.++++..
T Consensus 142 ekr--slRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~~v 189 (657)
T KOG2377|consen 142 EKR--SLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAGTM 189 (657)
T ss_pred hhh--hhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeecee
Confidence 221 111122445567777888888745555553444335555555543
Done!