Query 003822
Match_columns 793
No_of_seqs 732 out of 4869
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 05:14:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003822.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003822hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vyh_C Platelet-activating fac 100.0 9.5E-38 3.2E-42 350.1 41.1 278 456-781 111-409 (410)
2 1got_B GT-beta; complex (GTP-b 100.0 1.3E-36 4.6E-41 331.4 46.7 282 456-780 58-340 (340)
3 4gqb_B Methylosome protein 50; 100.0 1.1E-37 3.6E-42 342.3 36.9 290 456-788 33-336 (344)
4 3ow8_A WD repeat-containing pr 100.0 5.1E-37 1.8E-41 332.9 41.6 282 456-782 35-320 (321)
5 2ynn_A Coatomer subunit beta'; 100.0 1.9E-36 6.5E-41 325.0 45.0 284 456-783 16-302 (304)
6 4ery_A WD repeat-containing pr 100.0 8.2E-36 2.8E-40 319.5 46.2 284 456-782 26-311 (312)
7 3fm0_A Protein CIAO1; WDR39,SG 100.0 3E-36 1E-40 329.5 39.8 301 456-787 19-339 (345)
8 2pbi_B Guanine nucleotide-bind 100.0 2.6E-35 8.9E-40 323.7 46.3 286 456-780 67-354 (354)
9 4g56_B MGC81050 protein; prote 100.0 1E-36 3.5E-41 335.5 34.7 292 455-785 44-345 (357)
10 3iz6_a 40S ribosomal protein R 100.0 1.8E-35 6.1E-40 327.8 36.7 299 456-785 69-377 (380)
11 3frx_A Guanine nucleotide-bind 100.0 4.2E-34 1.4E-38 309.1 43.9 286 456-782 20-316 (319)
12 1erj_A Transcriptional repress 100.0 1.3E-33 4.4E-38 314.3 42.0 283 456-783 67-389 (393)
13 2hes_X YDR267CP; beta-propelle 100.0 1.1E-33 3.7E-38 307.3 39.9 291 456-783 17-328 (330)
14 4aow_A Guanine nucleotide-bind 100.0 5.2E-33 1.8E-37 298.8 43.2 298 442-784 34-338 (340)
15 1nr0_A Actin interacting prote 100.0 2E-33 6.8E-38 331.3 43.1 297 455-785 149-569 (611)
16 3zwl_B Eukaryotic translation 100.0 2E-32 6.8E-37 296.4 43.7 294 435-784 21-347 (369)
17 2xzm_R RACK1; ribosome, transl 100.0 1.9E-32 6.3E-37 298.8 42.8 291 456-782 24-339 (343)
18 4e54_B DNA damage-binding prot 100.0 8.8E-35 3E-39 327.9 25.0 294 455-785 121-432 (435)
19 3ei3_B DNA damage-binding prot 100.0 7.9E-33 2.7E-37 304.7 38.0 289 456-783 76-382 (383)
20 1k8k_C P40, ARP2/3 complex 41 100.0 2.1E-32 7.1E-37 297.9 39.0 306 456-783 11-361 (372)
21 3gre_A Serine/threonine-protei 100.0 1.3E-33 4.4E-38 316.7 29.3 312 456-780 66-437 (437)
22 1gxr_A ESG1, transducin-like e 100.0 9.8E-32 3.4E-36 287.6 42.3 279 456-781 54-335 (337)
23 1nr0_A Actin interacting prote 100.0 2.6E-32 8.9E-37 321.8 40.7 280 456-784 62-356 (611)
24 3dm0_A Maltose-binding peripla 100.0 6.4E-32 2.2E-36 322.8 42.2 299 456-782 385-692 (694)
25 1sq9_A Antiviral protein SKI8; 100.0 5.9E-32 2E-36 297.8 36.8 301 456-783 19-395 (397)
26 3ow8_A WD repeat-containing pr 100.0 8.4E-32 2.9E-36 291.8 37.0 237 456-714 83-320 (321)
27 4gqb_B Methylosome protein 50; 100.0 2.9E-32 9.8E-37 299.1 33.5 244 456-718 85-334 (344)
28 2ymu_A WD-40 repeat protein; u 100.0 2.2E-31 7.6E-36 308.7 42.8 271 456-780 306-577 (577)
29 3i2n_A WD repeat-containing pr 100.0 3E-32 1E-36 294.4 32.5 308 456-784 21-354 (357)
30 2ynn_A Coatomer subunit beta'; 100.0 1.8E-31 6E-36 286.3 36.9 252 489-785 6-261 (304)
31 3odt_A Protein DOA1; ubiquitin 100.0 1.4E-30 4.7E-35 276.1 42.4 277 456-785 21-298 (313)
32 4h5i_A Guanine nucleotide-exch 100.0 2.9E-31 9.9E-36 293.0 38.7 298 454-787 15-347 (365)
33 3dwl_C Actin-related protein 2 100.0 5.1E-33 1.7E-37 304.9 23.4 305 456-781 14-377 (377)
34 2pm9_A Protein WEB1, protein t 100.0 2.5E-32 8.4E-37 302.4 28.1 309 455-783 69-414 (416)
35 1vyh_C Platelet-activating fac 100.0 1.4E-31 4.9E-36 299.8 34.3 237 456-713 153-409 (410)
36 3frx_A Guanine nucleotide-bind 100.0 3.9E-31 1.4E-35 285.7 36.3 240 456-716 68-318 (319)
37 3k26_A Polycomb protein EED; W 100.0 3.9E-31 1.3E-35 286.3 35.7 288 456-782 21-365 (366)
38 4gga_A P55CDC, cell division c 100.0 1.6E-30 5.6E-35 291.4 41.4 281 454-783 106-395 (420)
39 1r5m_A SIR4-interacting protei 100.0 7.8E-31 2.7E-35 289.5 37.0 305 455-782 110-424 (425)
40 3vl1_A 26S proteasome regulato 100.0 5.6E-31 1.9E-35 292.6 36.0 292 456-783 100-419 (420)
41 2pm9_A Protein WEB1, protein t 100.0 1.5E-32 5.1E-37 304.1 22.7 294 456-786 15-340 (416)
42 4ggc_A P55CDC, cell division c 100.0 4.2E-30 1.4E-34 273.4 40.8 281 454-783 26-315 (318)
43 3dw8_B Serine/threonine-protei 100.0 6.1E-31 2.1E-35 294.4 36.0 311 455-782 30-445 (447)
44 2j04_B YDR362CP, TAU91; beta p 100.0 4.4E-32 1.5E-36 314.3 26.6 308 465-784 172-518 (524)
45 2ymu_A WD-40 repeat protein; u 100.0 5.6E-30 1.9E-34 296.9 44.1 273 456-782 265-538 (577)
46 3vl1_A 26S proteasome regulato 100.0 6.3E-32 2.1E-36 300.3 26.5 284 456-785 59-367 (420)
47 1got_B GT-beta; complex (GTP-b 100.0 1.7E-30 5.7E-35 283.2 36.6 236 456-712 100-340 (340)
48 4a11_B DNA excision repair pro 100.0 1.5E-30 5E-35 286.2 35.8 291 456-785 46-367 (408)
49 1erj_A Transcriptional repress 100.0 1.7E-30 5.8E-35 289.1 36.5 242 455-716 125-390 (393)
50 3mkq_A Coatomer beta'-subunit; 100.0 4.6E-30 1.6E-34 310.2 43.2 284 456-784 16-303 (814)
51 2pm7_B Protein transport prote 100.0 1.3E-30 4.5E-35 278.5 33.7 246 456-714 12-284 (297)
52 4aez_A CDC20, WD repeat-contai 100.0 4.4E-30 1.5E-34 285.9 38.1 281 455-785 95-382 (401)
53 1r5m_A SIR4-interacting protei 100.0 3.4E-30 1.2E-34 284.4 36.5 279 456-783 48-361 (425)
54 1gxr_A ESG1, transducin-like e 100.0 6.4E-30 2.2E-34 273.5 36.8 284 456-785 12-298 (337)
55 3fm0_A Protein CIAO1; WDR39,SG 100.0 7.5E-30 2.6E-34 278.8 35.1 254 456-720 64-340 (345)
56 3f3f_A Nucleoporin SEH1; struc 100.0 8E-30 2.7E-34 272.1 33.9 257 456-720 14-342 (351)
57 4g56_B MGC81050 protein; prote 100.0 1.8E-30 6.2E-35 285.6 29.3 245 456-720 97-348 (357)
58 2pbi_B Guanine nucleotide-bind 100.0 8.1E-30 2.8E-34 279.9 33.9 237 456-712 109-354 (354)
59 2xzm_R RACK1; ribosome, transl 100.0 1.1E-29 3.8E-34 276.8 33.7 244 456-717 79-342 (343)
60 1yfq_A Cell cycle arrest prote 100.0 7.2E-30 2.5E-34 274.9 31.7 277 456-781 14-322 (342)
61 3v7d_B Cell division control p 100.0 1.3E-28 4.6E-33 278.0 43.2 281 442-785 117-423 (464)
62 2hes_X YDR267CP; beta-propelle 100.0 1.8E-29 6.1E-34 274.1 34.4 247 456-715 61-328 (330)
63 3v7d_B Cell division control p 100.0 2E-28 6.8E-33 276.6 44.3 281 456-781 165-461 (464)
64 4ery_A WD repeat-containing pr 100.0 7.6E-29 2.6E-33 265.2 38.4 251 494-785 19-270 (312)
65 2pm7_B Protein transport prote 100.0 4.9E-29 1.7E-33 266.3 36.7 252 495-783 6-285 (297)
66 2aq5_A Coronin-1A; WD40 repeat 100.0 2.9E-30 9.8E-35 287.0 27.0 294 456-784 37-343 (402)
67 2ovr_B FBW7, F-BOX/WD repeat p 100.0 2.6E-28 9E-33 274.9 43.1 271 456-785 122-393 (445)
68 3iz6_a 40S ribosomal protein R 100.0 1.3E-30 4.6E-35 288.6 23.3 252 456-718 111-378 (380)
69 1pgu_A Actin interacting prote 100.0 3.5E-29 1.2E-33 291.2 35.1 303 455-782 20-365 (615)
70 3bg1_A Protein SEC13 homolog; 100.0 2.8E-30 9.5E-35 278.7 23.9 245 456-714 16-292 (316)
71 1pgu_A Actin interacting prote 100.0 1.4E-28 4.8E-33 286.1 39.8 284 456-783 163-614 (615)
72 2ovr_B FBW7, F-BOX/WD repeat p 100.0 7.7E-28 2.6E-32 271.1 44.0 278 456-784 162-443 (445)
73 3sfz_A APAF-1, apoptotic pepti 100.0 1.4E-28 4.9E-33 311.7 42.3 281 456-782 618-912 (1249)
74 2oaj_A Protein SNI1; WD40 repe 100.0 5.6E-29 1.9E-33 306.3 36.6 237 456-713 20-310 (902)
75 1p22_A F-BOX/WD-repeat protein 100.0 1.4E-28 4.6E-33 276.9 35.8 268 456-785 136-416 (435)
76 4aez_A CDC20, WD repeat-contai 100.0 1.7E-28 5.7E-33 273.1 35.2 245 456-720 137-385 (401)
77 3jrp_A Fusion protein of prote 100.0 1.2E-28 4.1E-33 268.1 32.9 250 456-719 14-291 (379)
78 3mmy_A MRNA export factor; mRN 100.0 2.3E-28 7.9E-33 264.3 34.4 279 456-780 42-343 (368)
79 4gga_A P55CDC, cell division c 100.0 6.2E-28 2.1E-32 270.4 39.0 244 455-720 149-400 (420)
80 3dm0_A Maltose-binding peripla 100.0 3.8E-28 1.3E-32 290.1 35.1 242 456-714 433-692 (694)
81 3k26_A Polycomb protein EED; W 100.0 4.8E-29 1.6E-33 269.9 24.4 246 455-715 71-366 (366)
82 4aow_A Guanine nucleotide-bind 100.0 2.3E-27 7.9E-32 254.6 37.3 244 456-718 89-340 (340)
83 3bg1_A Protein SEC13 homolog; 100.0 6.1E-29 2.1E-33 268.2 24.5 254 495-783 10-293 (316)
84 3zwl_B Eukaryotic translation 100.0 5.5E-27 1.9E-31 253.5 37.4 251 456-720 77-351 (369)
85 3jrp_A Fusion protein of prote 100.0 1.7E-27 5.8E-32 259.0 33.2 254 496-782 9-286 (379)
86 2oaj_A Protein SNI1; WD40 repe 100.0 8.4E-28 2.9E-32 295.8 34.4 298 455-781 153-659 (902)
87 2vdu_B TRNA (guanine-N(7)-)-me 100.0 3.3E-27 1.1E-31 266.9 36.2 286 456-784 7-392 (450)
88 3f3f_A Nucleoporin SEH1; struc 100.0 5.7E-27 2E-31 249.9 36.1 273 495-784 8-338 (351)
89 1sq9_A Antiviral protein SKI8; 100.0 1.6E-27 5.3E-32 262.4 32.2 250 456-717 65-397 (397)
90 1k8k_C P40, ARP2/3 complex 41 100.0 1.4E-27 4.8E-32 259.7 31.3 251 456-719 55-365 (372)
91 3gre_A Serine/threonine-protei 100.0 2.6E-28 8.9E-33 273.4 25.8 296 461-785 35-361 (437)
92 3i2n_A WD repeat-containing pr 100.0 1.2E-27 4.3E-32 258.2 30.2 252 456-718 68-356 (357)
93 2xyi_A Probable histone-bindin 100.0 2.8E-27 9.5E-32 266.3 32.8 274 495-784 125-411 (430)
94 3sfz_A APAF-1, apoptotic pepti 100.0 1.5E-27 5.2E-32 302.3 32.5 290 455-785 842-1160(1249)
95 3ei3_B DNA damage-binding prot 100.0 8.4E-27 2.9E-31 256.5 34.2 240 456-715 121-382 (383)
96 3mkq_A Coatomer beta'-subunit; 100.0 1.2E-26 4E-31 280.3 37.8 246 456-720 58-307 (814)
97 4ggc_A P55CDC, cell division c 100.0 9.4E-26 3.2E-30 239.7 37.9 240 456-717 70-317 (318)
98 3lrv_A PRE-mRNA-splicing facto 100.0 8.7E-28 3E-32 261.6 22.5 243 465-720 47-297 (343)
99 1l0q_A Surface layer protein; 100.0 1.1E-25 3.6E-30 247.8 39.1 268 467-784 3-276 (391)
100 4a11_B DNA excision repair pro 100.0 2.6E-26 9E-31 252.1 34.1 283 455-783 101-405 (408)
101 4e54_B DNA damage-binding prot 100.0 1.2E-27 4.2E-32 269.4 24.0 268 496-784 117-388 (435)
102 2aq5_A Coronin-1A; WD40 repeat 100.0 1.2E-26 4.2E-31 257.6 30.3 249 455-719 83-346 (402)
103 2xyi_A Probable histone-bindin 100.0 1.9E-26 6.3E-31 259.6 30.4 250 456-716 131-411 (430)
104 3bws_A Protein LP49; two-domai 100.0 7.5E-26 2.6E-30 252.5 33.5 278 456-782 125-431 (433)
105 3odt_A Protein DOA1; ubiquitin 100.0 1.3E-25 4.5E-30 237.7 33.5 235 456-720 62-301 (313)
106 3jro_A Fusion protein of prote 99.9 1.4E-26 4.7E-31 279.8 26.2 248 456-717 12-287 (753)
107 1l0q_A Surface layer protein; 99.9 1.9E-24 6.4E-29 237.8 40.4 247 456-728 34-286 (391)
108 3dwl_C Actin-related protein 2 99.9 6.5E-27 2.2E-31 256.2 20.2 242 497-782 10-280 (377)
109 3dw8_B Serine/threonine-protei 99.9 3.6E-26 1.2E-30 255.6 26.7 269 496-784 26-374 (447)
110 4h5i_A Guanine nucleotide-exch 99.9 1.1E-25 3.8E-30 248.3 30.0 241 456-716 76-344 (365)
111 2j04_A TAU60, YPL007P, hypothe 99.9 2.8E-26 9.5E-31 262.7 25.6 259 456-782 18-296 (588)
112 4gq1_A NUP37; propeller, trans 99.9 6.4E-26 2.2E-30 252.4 26.6 292 456-781 18-387 (393)
113 1yfq_A Cell cycle arrest prote 99.9 2.8E-25 9.4E-30 239.0 29.6 255 496-785 9-284 (342)
114 3jro_A Fusion protein of prote 99.9 1.3E-25 4.5E-30 271.2 28.7 256 495-783 6-285 (753)
115 2j04_B YDR362CP, TAU91; beta p 99.9 7.7E-26 2.6E-30 261.9 24.7 237 509-784 171-429 (524)
116 3vu4_A KMHSV2; beta-propeller 99.9 6.5E-25 2.2E-29 240.9 30.2 292 456-784 22-337 (355)
117 1p22_A F-BOX/WD-repeat protein 99.9 8.8E-25 3E-29 245.7 30.7 234 456-720 176-419 (435)
118 3mmy_A MRNA export factor; mRN 99.9 4.6E-24 1.6E-28 230.5 33.0 272 481-784 24-305 (368)
119 2vdu_B TRNA (guanine-N(7)-)-me 99.9 7.9E-24 2.7E-28 239.2 34.0 244 456-715 105-391 (450)
120 2w18_A PALB2, fancn, partner a 99.9 2.4E-23 8.2E-28 225.2 32.4 281 456-781 42-355 (356)
121 3lrv_A PRE-mRNA-splicing facto 99.9 1.1E-24 3.7E-29 237.1 21.8 234 509-785 46-294 (343)
122 4gq1_A NUP37; propeller, trans 99.9 1.3E-24 4.5E-29 241.8 22.9 237 461-713 96-387 (393)
123 3vu4_A KMHSV2; beta-propeller 99.9 2.7E-23 9.1E-28 228.0 28.9 248 480-784 3-272 (355)
124 3bws_A Protein LP49; two-domai 99.9 1.3E-22 4.4E-27 226.3 34.4 237 455-715 171-432 (433)
125 2j04_A TAU60, YPL007P, hypothe 99.9 1.2E-23 4.1E-28 240.9 18.6 239 455-759 87-342 (588)
126 1nir_A Nitrite reductase; hemo 99.9 1.1E-21 3.9E-26 228.1 34.0 284 461-787 145-462 (543)
127 2w18_A PALB2, fancn, partner a 99.9 7.4E-22 2.5E-26 213.6 26.3 215 456-713 114-355 (356)
128 2hqs_A Protein TOLB; TOLB, PAL 99.9 7.1E-21 2.4E-25 213.6 29.4 279 456-784 65-388 (415)
129 3u4y_A Uncharacterized protein 99.9 6.5E-20 2.2E-24 196.7 35.3 289 461-785 5-306 (331)
130 1ri6_A Putative isomerase YBHE 99.9 3.5E-20 1.2E-24 198.5 29.8 274 467-782 6-307 (343)
131 2ecf_A Dipeptidyl peptidase IV 99.9 2E-20 6.9E-25 224.1 30.9 283 456-783 39-413 (741)
132 3vgz_A Uncharacterized protein 99.9 2.5E-19 8.5E-24 193.2 35.3 274 456-764 43-330 (353)
133 2hqs_A Protein TOLB; TOLB, PAL 99.9 1.6E-19 5.6E-24 202.6 33.7 244 466-758 143-408 (415)
134 1nir_A Nitrite reductase; hemo 99.9 1.6E-19 5.6E-24 209.9 34.5 299 456-784 181-515 (543)
135 1pby_B Quinohemoprotein amine 99.8 4.8E-19 1.7E-23 189.1 26.5 272 467-784 2-311 (337)
136 2ojh_A Uncharacterized protein 99.8 5.3E-19 1.8E-23 184.0 26.0 250 471-761 17-285 (297)
137 1ri6_A Putative isomerase YBHE 99.8 5.4E-18 1.9E-22 181.4 33.2 245 456-718 40-313 (343)
138 2z3z_A Dipeptidyl aminopeptida 99.8 1.6E-18 5.3E-23 206.6 30.7 289 456-784 84-436 (706)
139 1xfd_A DIP, dipeptidyl aminope 99.8 2.2E-19 7.5E-24 214.3 23.0 285 456-783 19-393 (723)
140 1pby_B Quinohemoprotein amine 99.8 2.1E-18 7.3E-23 184.1 25.8 242 456-723 36-318 (337)
141 3u4y_A Uncharacterized protein 99.8 7.2E-18 2.5E-22 180.7 28.6 245 456-718 43-307 (331)
142 1jmx_B Amine dehydrogenase; ox 99.8 6.3E-18 2.2E-22 181.6 26.7 248 458-725 4-335 (349)
143 3hfq_A Uncharacterized protein 99.8 9.7E-18 3.3E-22 181.6 27.7 260 456-720 42-324 (347)
144 2ecf_A Dipeptidyl peptidase IV 99.8 4.6E-18 1.6E-22 203.6 26.1 286 456-782 111-458 (741)
145 2z3z_A Dipeptidyl aminopeptida 99.8 9.9E-18 3.4E-22 199.7 27.1 276 457-782 29-390 (706)
146 3hfq_A Uncharacterized protein 99.8 1E-16 3.5E-21 173.6 32.1 272 475-783 15-317 (347)
147 3scy_A Hypothetical bacterial 99.8 5.1E-16 1.8E-20 169.1 37.8 256 456-720 52-344 (361)
148 3o4h_A Acylamino-acid-releasin 99.8 1.8E-17 6.2E-22 193.2 26.4 233 456-720 24-279 (582)
149 3vgz_A Uncharacterized protein 99.8 1.4E-16 4.8E-21 171.6 31.3 230 456-705 91-335 (353)
150 2ojh_A Uncharacterized protein 99.8 1.7E-17 5.7E-22 172.7 23.0 231 456-705 44-293 (297)
151 3scy_A Hypothetical bacterial 99.8 4.4E-16 1.5E-20 169.6 33.0 282 466-783 13-337 (361)
152 2oit_A Nucleoporin 214KDA; NH2 99.8 1.4E-16 4.7E-21 180.0 29.9 250 456-714 39-332 (434)
153 1xfd_A DIP, dipeptidyl aminope 99.8 2.6E-17 8.8E-22 196.3 24.2 252 456-716 63-394 (723)
154 2oit_A Nucleoporin 214KDA; NH2 99.8 5.4E-17 1.8E-21 183.4 24.0 224 476-716 23-279 (434)
155 1k32_A Tricorn protease; prote 99.7 1.4E-16 4.7E-21 199.1 26.7 277 456-781 206-500 (1045)
156 1jmx_B Amine dehydrogenase; ox 99.7 4.9E-16 1.7E-20 166.8 23.9 237 504-784 5-326 (349)
157 3pe7_A Oligogalacturonate lyas 99.7 4.3E-16 1.5E-20 170.7 22.9 291 458-783 40-382 (388)
158 1z68_A Fibroblast activation p 99.7 9.8E-17 3.4E-21 191.6 18.7 280 458-783 20-391 (719)
159 1k32_A Tricorn protease; prote 99.7 1.2E-15 4.1E-20 190.6 28.1 275 456-785 298-639 (1045)
160 1jof_A Carboxy-CIS,CIS-muconat 99.7 2.1E-15 7.1E-20 165.5 24.9 249 456-716 42-342 (365)
161 1jof_A Carboxy-CIS,CIS-muconat 99.7 5.4E-15 1.9E-19 162.1 26.2 280 468-784 4-342 (365)
162 1z68_A Fibroblast activation p 99.7 4.8E-16 1.6E-20 185.7 18.4 292 456-782 62-442 (719)
163 3o4h_A Acylamino-acid-releasin 99.7 9.5E-16 3.3E-20 178.7 19.9 240 498-781 21-274 (582)
164 3fvz_A Peptidyl-glycine alpha- 99.6 6.3E-14 2.1E-18 151.6 29.1 253 456-715 26-322 (329)
165 4a5s_A Dipeptidyl peptidase 4 99.6 1.7E-14 5.9E-19 173.5 26.8 245 456-720 19-358 (740)
166 1q7f_A NHL, brain tumor CG1071 99.6 2.5E-13 8.6E-18 142.7 31.5 242 455-717 31-282 (286)
167 3c5m_A Oligogalacturonate lyas 99.6 5.4E-15 1.9E-19 161.7 17.1 295 456-783 38-382 (396)
168 2oiz_A Aromatic amine dehydrog 99.6 3.3E-13 1.1E-17 148.3 28.8 260 456-759 53-359 (361)
169 1q7f_A NHL, brain tumor CG1071 99.6 2.8E-12 9.6E-17 134.7 32.3 250 496-783 27-280 (286)
170 3azo_A Aminopeptidase; POP fam 99.5 8.3E-13 2.8E-17 155.9 26.0 256 456-727 26-334 (662)
171 3pe7_A Oligogalacturonate lyas 99.5 1.6E-12 5.6E-17 142.1 26.5 241 458-714 85-381 (388)
172 3dsm_A Uncharacterized protein 99.5 3.8E-12 1.3E-16 137.7 28.8 264 474-783 15-302 (328)
173 3dsm_A Uncharacterized protein 99.5 2.4E-12 8.2E-17 139.3 26.8 247 456-723 46-309 (328)
174 1qks_A Cytochrome CD1 nitrite 99.5 1.5E-11 5.2E-16 143.2 35.4 244 465-726 166-437 (567)
175 2oiz_A Aromatic amine dehydrog 99.5 4.5E-12 1.6E-16 139.2 29.1 270 474-784 29-335 (361)
176 2gop_A Trilobed protease; beta 99.5 3.2E-12 1.1E-16 137.7 27.3 256 456-782 17-330 (347)
177 3fvz_A Peptidyl-glycine alpha- 99.5 4.8E-12 1.6E-16 136.7 28.6 248 499-784 24-323 (329)
178 2dg1_A DRP35, lactonase; beta 99.5 2.4E-11 8E-16 130.4 30.9 234 456-704 47-300 (333)
179 2dg1_A DRP35, lactonase; beta 99.5 9E-12 3.1E-16 133.7 27.4 267 456-759 8-291 (333)
180 4a5s_A Dipeptidyl peptidase 4 99.5 4.4E-12 1.5E-16 152.5 27.3 234 457-703 65-383 (740)
181 2z2n_A Virginiamycin B lyase; 99.5 3E-10 1E-14 118.7 36.8 238 456-717 17-256 (299)
182 2xdw_A Prolyl endopeptidase; a 99.5 1.6E-11 5.5E-16 146.8 30.0 244 455-717 126-416 (710)
183 3e5z_A Putative gluconolactona 99.5 1.6E-11 5.5E-16 129.8 26.5 238 456-718 30-289 (296)
184 3c5m_A Oligogalacturonate lyas 99.4 1E-12 3.4E-17 143.7 17.2 236 459-717 86-386 (396)
185 3azo_A Aminopeptidase; POP fam 99.4 1E-11 3.6E-16 146.4 25.9 240 459-720 82-374 (662)
186 2xdw_A Prolyl endopeptidase; a 99.4 3.9E-11 1.3E-15 143.4 30.7 250 496-783 122-414 (710)
187 1rwi_B Serine/threonine-protei 99.4 1.6E-11 5.4E-16 127.3 23.0 242 455-718 25-267 (270)
188 3no2_A Uncharacterized protein 99.4 6.5E-11 2.2E-15 125.2 26.8 240 466-728 5-263 (276)
189 2bkl_A Prolyl endopeptidase; m 99.4 2.9E-11 1E-15 144.2 23.7 235 465-720 78-355 (695)
190 2gop_A Trilobed protease; beta 99.4 1.5E-10 5.2E-15 124.5 26.9 231 456-728 61-340 (347)
191 1qks_A Cytochrome CD1 nitrite 99.4 1.8E-09 6.2E-14 125.7 37.7 301 456-783 199-538 (567)
192 3e5z_A Putative gluconolactona 99.4 4.2E-10 1.4E-14 118.8 29.2 231 496-777 25-281 (296)
193 1pjx_A Dfpase, DIISOPROPYLFLUO 99.3 3.5E-10 1.2E-14 119.6 28.0 245 456-715 20-299 (314)
194 3no2_A Uncharacterized protein 99.3 3.5E-10 1.2E-14 119.5 27.3 195 510-726 4-204 (276)
195 2qc5_A Streptogramin B lactona 99.3 4.6E-09 1.6E-13 109.7 35.0 241 456-719 22-263 (300)
196 2bkl_A Prolyl endopeptidase; m 99.3 3.3E-11 1.1E-15 143.8 20.3 243 454-718 121-400 (695)
197 2mad_H Methylamine dehydrogena 99.3 9.2E-09 3.2E-13 113.5 37.0 280 465-785 31-352 (373)
198 1yr2_A Prolyl oligopeptidase; 99.3 6.4E-10 2.2E-14 133.7 27.5 278 463-783 116-441 (741)
199 2z2n_A Virginiamycin B lyase; 99.2 9E-09 3.1E-13 107.4 32.2 238 456-717 59-297 (299)
200 3hrp_A Uncharacterized protein 99.2 3.7E-09 1.3E-13 118.1 30.9 243 455-713 132-408 (409)
201 2mad_H Methylamine dehydrogena 99.2 9.5E-09 3.2E-13 113.4 33.6 241 458-720 70-355 (373)
202 3g4e_A Regucalcin; six bladed 99.2 7.7E-09 2.6E-13 109.7 29.7 232 456-704 15-263 (297)
203 1rwi_B Serine/threonine-protei 99.2 1.6E-09 5.6E-14 111.9 23.5 240 500-785 25-266 (270)
204 1yr2_A Prolyl oligopeptidase; 99.2 1.7E-09 5.8E-14 130.0 26.7 243 455-718 164-444 (741)
205 1pjx_A Dfpase, DIISOPROPYLFLUO 99.2 9.5E-09 3.3E-13 108.5 28.4 249 498-784 17-300 (314)
206 1xip_A Nucleoporin NUP159; bet 99.2 9.9E-09 3.4E-13 113.5 29.1 287 456-781 40-380 (388)
207 3sjl_D Methylamine dehydrogena 99.1 3.9E-09 1.3E-13 116.5 23.5 251 456-728 81-376 (386)
208 2ghs_A AGR_C_1268P; regucalcin 99.1 7.9E-08 2.7E-12 103.5 32.2 229 456-704 51-293 (326)
209 3g4e_A Regucalcin; six bladed 99.1 2.2E-07 7.6E-12 98.4 34.5 228 498-764 12-258 (297)
210 3c75_H MADH, methylamine dehyd 99.1 1.6E-08 5.5E-13 113.2 26.4 282 465-785 83-404 (426)
211 3iuj_A Prolyl endopeptidase; h 99.1 5.2E-09 1.8E-13 124.9 23.9 243 455-719 130-409 (693)
212 2qc5_A Streptogramin B lactona 99.1 8E-08 2.7E-12 100.2 30.1 234 456-713 64-298 (300)
213 3sjl_D Methylamine dehydrogena 99.1 2.9E-08 1E-12 109.5 26.9 283 461-784 40-364 (386)
214 1xip_A Nucleoporin NUP159; bet 99.1 1.3E-08 4.5E-13 112.5 23.9 183 500-700 39-230 (388)
215 1yiq_A Quinohemoprotein alcoho 99.0 5.3E-08 1.8E-12 116.1 26.9 250 466-724 121-514 (689)
216 3c75_H MADH, methylamine dehyd 98.9 3E-08 1E-12 111.1 21.0 242 456-720 121-407 (426)
217 1kb0_A Quinohemoprotein alcoho 98.9 3.1E-07 1.1E-11 109.3 31.0 251 466-724 128-516 (677)
218 2ghs_A AGR_C_1268P; regucalcin 98.9 1E-06 3.4E-11 94.8 32.2 218 501-760 51-284 (326)
219 3dr2_A Exported gluconolactona 98.9 8.7E-08 3E-12 101.9 23.4 226 456-705 47-298 (305)
220 3hrp_A Uncharacterized protein 98.9 3.7E-07 1.3E-11 101.9 28.5 254 499-781 131-408 (409)
221 3q7m_A Lipoprotein YFGL, BAMB; 98.9 1E-06 3.5E-11 96.1 31.4 231 466-721 103-343 (376)
222 1yiq_A Quinohemoprotein alcoho 98.9 2.6E-07 9.1E-12 110.1 28.2 200 466-676 70-346 (689)
223 3q7m_A Lipoprotein YFGL, BAMB; 98.9 6.6E-07 2.2E-11 97.6 29.1 228 466-720 53-301 (376)
224 3dr2_A Exported gluconolactona 98.9 3.2E-07 1.1E-11 97.4 25.8 232 497-778 43-302 (305)
225 1kb0_A Quinohemoprotein alcoho 98.9 2.2E-07 7.6E-12 110.5 27.1 202 466-677 77-355 (677)
226 3iuj_A Prolyl endopeptidase; h 98.9 2.2E-07 7.5E-12 110.8 27.0 205 496-720 126-363 (693)
227 1mda_H Methylamine dehydrogena 98.9 8.8E-08 3E-12 105.4 20.6 242 468-728 34-357 (368)
228 2hz6_A Endoplasmic reticulum t 98.8 3.6E-09 1.2E-13 116.4 7.2 190 465-676 8-200 (369)
229 2qe8_A Uncharacterized protein 98.8 2.3E-07 7.8E-12 100.6 21.1 241 456-707 19-314 (343)
230 2hz6_A Endoplasmic reticulum t 98.7 1.7E-09 5.9E-14 119.1 2.0 188 510-723 8-200 (369)
231 2ece_A 462AA long hypothetical 98.7 5.9E-07 2E-11 100.1 22.0 227 463-702 93-399 (462)
232 1npe_A Nidogen, entactin; glyc 98.7 1.1E-05 3.7E-10 83.7 30.1 222 456-695 38-263 (267)
233 2ece_A 462AA long hypothetical 98.7 4.5E-06 1.5E-10 93.0 25.9 243 478-724 45-364 (462)
234 2fp8_A Strictosidine synthase; 98.6 1.1E-05 3.8E-10 86.2 27.8 243 456-714 21-312 (322)
235 2iwa_A Glutamine cyclotransfer 98.6 5.6E-06 1.9E-10 86.6 23.6 211 487-715 10-237 (266)
236 1npe_A Nidogen, entactin; glyc 98.6 9E-05 3.1E-09 76.6 32.4 232 468-720 3-243 (267)
237 1kv9_A Type II quinohemoprotei 98.6 5.9E-06 2E-10 98.1 25.8 200 466-676 66-341 (668)
238 2iwa_A Glutamine cyclotransfer 98.5 1.1E-05 3.8E-10 84.3 23.5 196 456-668 23-237 (266)
239 1fwx_A Nitrous oxide reductase 98.5 1.4E-06 4.8E-11 100.2 17.7 231 468-715 17-361 (595)
240 1kv9_A Type II quinohemoprotei 98.5 1.4E-05 4.7E-10 94.9 26.1 250 466-724 117-497 (668)
241 2ad6_A Methanol dehydrogenase 98.5 2.5E-05 8.6E-10 90.9 27.5 248 466-723 115-502 (571)
242 1mda_H Methylamine dehydrogena 98.5 1.5E-06 5.2E-11 95.5 16.1 214 456-676 68-354 (368)
243 3nol_A Glutamine cyclotransfer 98.5 1.1E-05 3.7E-10 83.8 21.5 195 488-701 33-243 (262)
244 2qe8_A Uncharacterized protein 98.5 3.3E-06 1.1E-10 91.4 18.3 206 455-665 68-318 (343)
245 3mbr_X Glutamine cyclotransfer 98.5 5.7E-05 1.9E-09 77.7 26.0 196 487-701 10-222 (243)
246 3nok_A Glutaminyl cyclase; bet 98.4 2.1E-05 7.2E-10 81.7 22.3 195 487-701 44-253 (268)
247 2ad6_A Methanol dehydrogenase 98.4 7.8E-05 2.7E-09 86.7 30.0 202 466-677 62-344 (571)
248 1fwx_A Nitrous oxide reductase 98.4 5.7E-06 2E-10 95.2 19.3 237 465-717 100-433 (595)
249 3nol_A Glutamine cyclotransfer 98.4 4.5E-05 1.5E-09 79.2 23.6 191 553-764 45-241 (262)
250 3hxj_A Pyrrolo-quinoline quino 98.4 5.3E-06 1.8E-10 87.8 15.7 264 456-785 62-326 (330)
251 3mbr_X Glutamine cyclotransfer 98.3 0.00011 3.9E-09 75.4 24.7 196 551-764 21-220 (243)
252 1w6s_A Methanol dehydrogenase 98.3 0.00013 4.6E-09 85.1 28.6 248 468-725 123-513 (599)
253 3nok_A Glutaminyl cyclase; bet 98.3 5.4E-05 1.8E-09 78.6 22.0 195 551-764 55-251 (268)
254 1flg_A Protein (quinoprotein e 98.3 8.9E-05 3E-09 86.4 26.0 252 466-724 117-525 (582)
255 1w6s_A Methanol dehydrogenase 98.3 0.00066 2.2E-08 79.2 32.6 204 466-677 62-351 (599)
256 2p4o_A Hypothetical protein; p 98.2 0.00054 1.9E-08 72.5 27.9 227 456-701 34-276 (306)
257 1ijq_A LDL receptor, low-densi 98.2 0.0028 9.6E-08 67.5 33.5 235 468-720 3-243 (316)
258 3qqz_A Putative uncharacterize 98.2 0.00037 1.3E-08 72.3 25.2 204 456-666 29-251 (255)
259 3hxj_A Pyrrolo-quinoline quino 98.2 8.3E-05 2.8E-09 78.5 20.6 216 466-714 107-323 (330)
260 1flg_A Protein (quinoprotein e 98.2 0.00041 1.4E-08 80.8 27.8 203 467-677 69-364 (582)
261 3v65_B Low-density lipoprotein 98.1 0.0019 6.5E-08 71.0 30.1 240 458-720 81-323 (386)
262 3v64_C Agrin; beta propeller, 98.1 0.004 1.4E-07 67.4 32.2 241 457-720 37-280 (349)
263 4a2l_A BT_4663, two-component 98.1 0.0085 2.9E-07 72.0 37.8 250 456-720 175-441 (795)
264 1ijq_A LDL receptor, low-densi 98.1 0.0028 9.5E-08 67.6 29.7 207 456-675 32-245 (316)
265 3v65_B Low-density lipoprotein 98.1 0.00085 2.9E-08 73.9 26.2 207 456-676 118-326 (386)
266 3v64_C Agrin; beta propeller, 98.0 0.0016 5.4E-08 70.7 27.3 207 456-676 75-283 (349)
267 3p5b_L Low density lipoprotein 98.0 0.0092 3.1E-07 65.9 33.8 238 468-720 85-325 (400)
268 4hw6_A Hypothetical protein, I 98.0 0.0022 7.4E-08 71.8 28.2 241 455-713 140-431 (433)
269 2fp8_A Strictosidine synthase; 98.0 0.00074 2.5E-08 71.8 22.7 209 500-720 20-273 (322)
270 3p5b_L Low density lipoprotein 98.0 0.0058 2E-07 67.5 30.3 208 456-676 114-328 (400)
271 3tc9_A Hypothetical hydrolase; 97.9 0.0025 8.6E-08 71.2 27.3 241 456-713 139-428 (430)
272 4a2l_A BT_4663, two-component 97.9 0.018 6.1E-07 69.2 36.4 247 455-718 264-529 (795)
273 1k3i_A Galactose oxidase precu 97.9 0.00028 9.5E-09 83.3 19.1 236 457-703 246-530 (656)
274 2p4o_A Hypothetical protein; p 97.8 0.0083 2.8E-07 63.2 28.1 198 499-718 32-244 (306)
275 2xe4_A Oligopeptidase B; hydro 97.8 0.0024 8.1E-08 76.7 25.1 243 455-718 175-461 (751)
276 3sov_A LRP-6, low-density lipo 97.8 0.016 5.6E-07 61.8 29.0 227 475-720 12-243 (318)
277 3sov_A LRP-6, low-density lipo 97.7 0.01 3.5E-07 63.4 26.6 207 456-676 37-246 (318)
278 1k3i_A Galactose oxidase precu 97.7 0.00022 7.5E-09 84.2 14.6 246 458-717 190-499 (656)
279 3kya_A Putative phosphatase; s 97.7 0.0089 3E-07 67.8 26.7 256 456-720 141-480 (496)
280 3v9f_A Two-component system se 97.7 0.066 2.3E-06 64.1 35.7 251 456-720 165-441 (781)
281 2xzh_A Clathrin heavy chain 1; 97.7 0.091 3.1E-06 55.9 31.7 242 459-719 72-336 (365)
282 3m0c_C LDL receptor, low-densi 97.6 0.045 1.6E-06 65.7 33.2 238 468-720 397-637 (791)
283 3v9f_A Two-component system se 97.6 0.041 1.4E-06 65.9 32.9 253 455-719 259-528 (781)
284 3tc9_A Hypothetical hydrolase; 97.6 0.0086 2.9E-07 66.8 25.2 155 500-667 138-300 (430)
285 3m0c_C LDL receptor, low-densi 97.5 0.03 1E-06 67.3 29.7 206 456-675 426-639 (791)
286 4hw6_A Hypothetical protein, I 97.5 0.011 3.8E-07 66.0 23.7 258 500-782 140-432 (433)
287 1a9n_A U2A', U2A'; complex (nu 97.5 4.1E-05 1.4E-09 74.4 3.0 107 100-211 19-126 (176)
288 3amr_A 3-phytase; beta-propell 97.5 0.042 1.4E-06 59.3 26.5 204 465-677 39-273 (355)
289 3qqz_A Putative uncharacterize 97.5 0.09 3.1E-06 54.2 28.2 207 551-779 27-249 (255)
290 3ei3_A DNA damage-binding prot 97.5 0.16 5.5E-06 63.6 35.7 288 456-784 556-914 (1158)
291 4a0p_A LRP6, LRP-6, low-densit 97.4 0.13 4.4E-06 60.2 32.7 232 468-720 8-242 (628)
292 1bpo_A Protein (clathrin); cla 97.4 0.18 6.1E-06 55.7 30.9 243 458-719 70-335 (494)
293 2xe4_A Oligopeptidase B; hydro 97.4 0.0088 3E-07 71.7 22.8 198 500-713 175-398 (751)
294 2ism_A Putative oxidoreductase 97.4 0.026 8.9E-07 61.1 24.0 235 456-705 33-337 (352)
295 4a0p_A LRP6, LRP-6, low-densit 97.4 0.083 2.8E-06 61.8 29.7 203 456-675 39-244 (628)
296 3a9g_A Putative uncharacterize 97.3 0.073 2.5E-06 57.6 26.4 239 456-701 31-329 (354)
297 2xbg_A YCF48-like protein; pho 97.3 0.26 9E-06 52.3 34.0 280 456-781 38-320 (327)
298 2g8s_A Glucose/sorbosone dehyd 97.3 0.035 1.2E-06 60.1 23.3 244 456-707 20-347 (353)
299 2ell_A Acidic leucine-rich nuc 97.1 0.00013 4.4E-09 70.1 2.2 108 100-209 24-131 (168)
300 2p9w_A MAL S 1 allergenic prot 97.1 0.085 2.9E-06 56.4 24.1 212 455-670 14-267 (334)
301 2je0_A Acidic leucine-rich nuc 97.1 0.00016 5.3E-09 68.0 2.4 107 100-208 17-123 (149)
302 1n7d_A LDL receptor, low-densi 97.1 0.0013 4.5E-08 78.2 10.9 228 475-720 385-619 (699)
303 1n7d_A LDL receptor, low-densi 97.0 0.00053 1.8E-08 81.7 6.4 207 456-675 408-621 (699)
304 3kya_A Putative phosphatase; s 97.0 0.19 6.5E-06 56.8 27.0 264 500-785 140-477 (496)
305 2vpj_A Kelch-like protein 12; 97.0 0.09 3.1E-06 54.7 22.6 233 465-717 14-280 (301)
306 2xbg_A YCF48-like protein; pho 97.0 0.15 5.3E-06 54.1 24.8 235 455-712 81-319 (327)
307 3amr_A 3-phytase; beta-propell 96.9 0.16 5.5E-06 54.7 23.6 203 511-727 40-276 (355)
308 2ell_A Acidic leucine-rich nuc 96.8 0.00077 2.6E-08 64.5 4.5 105 100-208 49-157 (168)
309 4ezg_A Putative uncharacterize 96.8 0.00096 3.3E-08 65.8 5.2 101 101-208 45-146 (197)
310 2xn4_A Kelch-like protein 2; s 96.8 0.14 4.9E-06 53.2 22.2 231 466-717 16-278 (302)
311 3s94_A LRP-6, low-density lipo 96.8 0.099 3.4E-06 61.1 22.9 202 456-672 42-247 (619)
312 4ezg_A Putative uncharacterize 96.8 0.00064 2.2E-08 67.1 3.4 100 100-206 88-189 (197)
313 3ii7_A Kelch-like protein 7; p 96.7 0.15 5.1E-06 53.2 21.9 231 466-717 12-274 (306)
314 3e6j_A Variable lymphocyte rec 96.7 0.00052 1.8E-08 69.7 2.5 104 100-208 40-145 (229)
315 1a9n_A U2A', U2A'; complex (nu 96.7 0.0017 5.7E-08 62.8 5.9 130 69-208 17-150 (176)
316 1xeu_A Internalin C; cellular 96.6 0.001 3.6E-08 69.0 4.1 102 100-212 85-186 (263)
317 1h6t_A Internalin B; cell adhe 96.5 0.0021 7.2E-08 67.7 5.8 102 100-211 112-213 (291)
318 2p9w_A MAL S 1 allergenic prot 96.5 0.23 7.7E-06 53.1 21.1 160 553-716 15-216 (334)
319 2ast_B S-phase kinase-associat 96.5 0.0029 9.9E-08 67.4 6.3 109 99-209 141-258 (336)
320 3s94_A LRP-6, low-density lipo 96.4 0.52 1.8E-05 54.9 26.0 199 456-669 351-552 (619)
321 1m9s_A Internalin B; cell inva 96.4 0.0022 7.5E-08 75.0 5.6 104 100-213 109-212 (605)
322 1z7x_W Ribonuclease inhibitor; 96.4 0.0041 1.4E-07 69.3 7.6 133 72-208 29-180 (461)
323 4asc_A Kelch repeat and BTB do 96.4 0.52 1.8E-05 49.3 23.5 228 468-717 7-279 (315)
324 3goz_A Leucine-rich repeat-con 96.3 0.0079 2.7E-07 65.2 8.9 162 45-208 55-235 (362)
325 3m19_A Variable lymphocyte rec 96.3 0.0014 4.7E-08 67.3 2.7 105 100-208 59-165 (251)
326 1cru_A Protein (soluble quinop 96.3 1.9 6.6E-05 48.0 29.6 110 456-570 29-163 (454)
327 2ca6_A RAN GTPase-activating p 96.3 0.011 3.9E-07 64.3 10.1 158 45-209 98-285 (386)
328 2o6q_A Variable lymphocyte rec 96.3 0.0015 5.1E-08 67.8 2.6 105 100-208 61-167 (270)
329 3m19_A Variable lymphocyte rec 96.2 0.0016 5.6E-08 66.7 2.7 105 100-208 35-141 (251)
330 3un9_A NLR family member X1; l 96.2 0.0035 1.2E-07 68.7 5.4 133 72-208 73-221 (372)
331 3rfs_A Internalin B, repeat mo 96.2 0.0015 5.1E-08 68.0 2.2 78 128-208 88-167 (272)
332 1h6u_A Internalin H; cell adhe 96.2 0.0041 1.4E-07 66.0 5.4 99 100-208 63-161 (308)
333 1h6t_A Internalin B; cell adhe 96.2 0.0034 1.2E-07 66.1 4.7 99 100-208 68-166 (291)
334 1xeu_A Internalin C; cellular 96.1 0.0036 1.2E-07 64.9 4.7 98 100-208 63-160 (263)
335 2o6s_A Variable lymphocyte rec 96.1 0.0018 6.2E-08 64.2 2.3 77 128-207 55-133 (208)
336 1zgk_A Kelch-like ECH-associat 96.1 0.33 1.1E-05 50.7 19.9 231 465-717 24-289 (308)
337 2xzh_A Clathrin heavy chain 1; 96.1 1.9 6.4E-05 45.9 27.7 224 475-724 48-299 (365)
338 3rfs_A Internalin B, repeat mo 96.1 0.002 6.9E-08 67.0 2.4 105 100-208 85-191 (272)
339 2o6s_A Variable lymphocyte rec 96.1 0.0023 7.9E-08 63.4 2.6 105 100-208 52-158 (208)
340 2wfh_A SLIT homolog 2 protein 96.0 0.0024 8.2E-08 63.0 2.6 103 100-207 31-135 (193)
341 1m9s_A Internalin B; cell inva 96.0 0.0037 1.3E-07 73.0 4.4 99 100-208 65-163 (605)
342 3das_A Putative oxidoreductase 96.0 2.2 7.4E-05 45.9 25.8 246 456-705 34-330 (347)
343 1h6u_A Internalin H; cell adhe 95.9 0.0064 2.2E-07 64.5 5.6 121 71-208 63-183 (308)
344 4fmz_A Internalin; leucine ric 95.9 0.0049 1.7E-07 66.0 4.7 103 99-209 220-322 (347)
345 2v9t_B SLIT homolog 2 protein 95.9 0.0024 8.2E-08 64.3 2.1 104 100-207 32-137 (220)
346 2o6q_A Variable lymphocyte rec 95.9 0.0028 9.7E-08 65.7 2.6 105 100-208 85-191 (270)
347 3goz_A Leucine-rich repeat-con 95.9 0.021 7.1E-07 61.8 9.5 107 101-208 52-177 (362)
348 1ozn_A Reticulon 4 receptor; N 95.9 0.0028 9.6E-08 66.1 2.4 106 100-208 32-139 (285)
349 2r9u_A Variable lymphocyte rec 95.9 0.0034 1.2E-07 60.8 2.7 78 127-207 35-114 (174)
350 1p9a_G Platelet glycoprotein I 95.8 0.0029 1E-07 66.6 2.3 77 128-207 103-181 (290)
351 2woz_A Kelch repeat and BTB do 95.8 0.97 3.3E-05 47.2 22.0 229 467-717 17-289 (318)
352 2je0_A Acidic leucine-rich nuc 95.8 0.0064 2.2E-07 56.7 4.3 77 127-208 19-98 (149)
353 2o6r_A Variable lymphocyte rec 95.8 0.0033 1.1E-07 60.6 2.3 105 100-208 28-134 (177)
354 4fmz_A Internalin; leucine ric 95.8 0.0062 2.1E-07 65.2 4.6 100 99-208 176-275 (347)
355 3o53_A Protein LRIM1, AGAP0063 95.8 0.0033 1.1E-07 66.8 2.4 74 128-207 147-223 (317)
356 4glp_A Monocyte differentiatio 95.8 0.004 1.4E-07 66.0 3.0 124 84-208 74-207 (310)
357 3sre_A PON1, serum paraoxonase 95.7 2.8 9.6E-05 45.2 30.0 212 474-695 81-326 (355)
358 1w8a_A SLIT protein; signaling 95.7 0.002 7E-08 63.3 0.6 79 126-207 30-111 (192)
359 4fcg_A Uncharacterized protein 95.7 0.0025 8.4E-08 68.4 1.3 130 68-208 78-216 (328)
360 1xi4_A Clathrin heavy chain; a 95.7 0.36 1.2E-05 60.6 20.1 241 459-719 71-335 (1630)
361 3g39_A Variable lymphocyte rec 95.7 0.0043 1.5E-07 59.8 2.7 77 128-207 33-111 (170)
362 3ii7_A Kelch-like protein 7; p 95.7 0.92 3.2E-05 47.0 21.1 192 465-671 55-275 (306)
363 1bpo_A Protein (clathrin); cla 95.7 3.4 0.00012 45.6 29.6 220 475-721 47-295 (494)
364 2z80_A TOLL-like receptor 2, v 95.6 0.0039 1.3E-07 67.3 2.4 77 128-207 103-183 (353)
365 1ds9_A Outer arm dynein; leuci 95.6 0.0013 4.5E-08 64.9 -1.5 77 128-208 73-150 (198)
366 2ca6_A RAN GTPase-activating p 95.6 0.019 6.5E-07 62.5 7.7 134 71-208 94-254 (386)
367 4glp_A Monocyte differentiatio 95.6 0.003 1E-07 66.9 1.2 145 61-208 81-234 (310)
368 2ism_A Putative oxidoreductase 95.6 1.6 5.5E-05 46.7 22.9 147 499-655 31-220 (352)
369 3zyj_A Leucine-rich repeat-con 95.5 0.0039 1.3E-07 69.5 2.0 102 100-208 88-195 (440)
370 2v9t_B SLIT homolog 2 protein 95.5 0.005 1.7E-07 61.9 2.6 101 100-207 56-161 (220)
371 2v70_A SLIT-2, SLIT homolog 2 95.5 0.0031 1.1E-07 63.4 1.1 76 128-206 35-113 (220)
372 2xn4_A Kelch-like protein 2; s 95.5 0.42 1.4E-05 49.6 17.7 190 465-671 61-279 (302)
373 2xot_A Amphoterin-induced prot 95.5 0.0034 1.2E-07 68.2 1.5 105 100-208 39-146 (361)
374 1w8a_A SLIT protein; signaling 95.5 0.003 1E-07 62.1 0.9 100 101-207 30-135 (192)
375 2be1_A Serine/threonine-protei 95.5 0.38 1.3E-05 51.6 17.2 196 467-673 11-236 (339)
376 3zyj_A Leucine-rich repeat-con 95.4 0.0041 1.4E-07 69.3 1.8 79 127-208 187-265 (440)
377 2ast_B S-phase kinase-associat 95.4 0.015 5.2E-07 61.7 6.2 133 70-208 141-282 (336)
378 2vpj_A Kelch-like protein 12; 95.4 0.46 1.6E-05 49.1 17.5 191 465-671 62-281 (301)
379 1z7x_W Ribonuclease inhibitor; 95.4 0.018 6E-07 64.1 6.7 133 72-208 171-323 (461)
380 3zyi_A Leucine-rich repeat-con 95.4 0.0046 1.6E-07 69.2 1.8 105 100-208 99-206 (452)
381 2wfh_A SLIT homolog 2 protein 95.3 0.0075 2.6E-07 59.4 2.9 80 126-208 32-112 (193)
382 1ozn_A Reticulon 4 receptor; N 95.3 0.0088 3E-07 62.2 3.6 105 100-208 105-211 (285)
383 3pbp_A Nucleoporin NUP82; beta 95.3 0.62 2.1E-05 51.3 18.2 144 509-663 30-207 (452)
384 3un9_A NLR family member X1; l 95.2 0.05 1.7E-06 59.4 9.5 133 71-208 101-249 (372)
385 2z62_A TOLL-like receptor 4, v 95.2 0.0062 2.1E-07 63.1 2.0 78 127-207 54-133 (276)
386 2xwt_C Thyrotropin receptor; s 95.1 0.0072 2.4E-07 61.2 2.2 100 101-208 32-140 (239)
387 2xwt_C Thyrotropin receptor; s 95.1 0.0061 2.1E-07 61.8 1.6 80 127-208 33-115 (239)
388 3e6j_A Variable lymphocyte rec 95.1 0.0086 2.9E-07 60.5 2.7 79 126-207 41-121 (229)
389 1ds9_A Outer arm dynein; leuci 95.1 0.0038 1.3E-07 61.5 -0.1 77 126-208 49-125 (198)
390 3e4g_A ATP synthase subunit S, 94.9 0.014 4.6E-07 56.9 3.5 83 124-208 60-149 (176)
391 3a9g_A Putative uncharacterize 94.9 1.7 5.6E-05 46.8 20.5 146 499-654 29-214 (354)
392 2z66_A Variable lymphocyte rec 94.9 0.0064 2.2E-07 64.0 1.2 105 100-208 126-233 (306)
393 2id5_A Lingo-1, leucine rich r 94.9 0.012 4.2E-07 66.0 3.6 78 128-208 107-186 (477)
394 1o6v_A Internalin A; bacterial 94.9 0.014 4.9E-07 65.4 4.1 98 100-207 68-165 (466)
395 2v70_A SLIT-2, SLIT homolog 2 94.9 0.012 3.9E-07 59.2 2.9 103 99-208 31-139 (220)
396 3sre_A PON1, serum paraoxonase 94.8 4 0.00014 43.9 23.2 191 519-720 81-305 (355)
397 2o6r_A Variable lymphocyte rec 94.8 0.012 4E-07 56.7 2.6 79 127-208 30-110 (177)
398 1wwl_A Monocyte differentiatio 94.8 0.019 6.5E-07 60.7 4.5 99 100-206 201-304 (312)
399 1xi4_A Clathrin heavy chain; a 94.7 0.99 3.4E-05 56.7 19.8 221 475-720 47-294 (1630)
400 3o6n_A APL1; leucine-rich repe 94.7 0.0097 3.3E-07 65.0 2.1 129 68-208 42-175 (390)
401 2z62_A TOLL-like receptor 4, v 94.7 0.01 3.5E-07 61.4 2.0 75 129-206 32-108 (276)
402 3t6q_A CD180 antigen; protein- 94.7 0.0087 3E-07 69.3 1.6 81 128-208 304-386 (606)
403 1dce_A Protein (RAB geranylger 94.7 0.0089 3E-07 69.2 1.6 90 111-208 429-518 (567)
404 2uvk_A YJHT; unknown function, 94.5 1.2 4.2E-05 47.2 18.2 239 465-720 19-347 (357)
405 1dce_A Protein (RAB geranylger 94.5 0.017 5.9E-07 66.8 3.7 104 100-210 441-545 (567)
406 3zyi_A Leucine-rich repeat-con 94.5 0.012 4E-07 65.9 2.2 78 128-208 199-276 (452)
407 1o6v_A Internalin A; bacterial 94.5 0.022 7.6E-07 63.8 4.4 99 100-208 243-341 (466)
408 1wwl_A Monocyte differentiatio 94.5 0.012 4E-07 62.4 2.0 122 86-208 80-211 (312)
409 3oja_A Leucine-rich immune mol 94.4 0.017 5.8E-07 65.4 3.1 103 100-207 144-246 (487)
410 3o6n_A APL1; leucine-rich repe 94.4 0.02 6.9E-07 62.4 3.5 102 100-208 45-151 (390)
411 4g8a_A TOLL-like receptor 4; l 94.3 0.015 5.3E-07 67.1 2.7 102 100-208 52-158 (635)
412 4asc_A Kelch repeat and BTB do 94.3 2.5 8.6E-05 43.9 19.7 192 465-672 45-281 (315)
413 1p9a_G Platelet glycoprotein I 94.3 0.017 5.9E-07 60.6 2.6 76 128-206 80-156 (290)
414 3oja_B Anopheles plasmodium-re 94.2 0.015 5.2E-07 67.5 2.4 131 68-208 48-181 (597)
415 4fcg_A Uncharacterized protein 94.2 0.018 6E-07 61.7 2.5 105 100-208 150-263 (328)
416 1xku_A Decorin; proteoglycan, 94.1 0.019 6.4E-07 61.1 2.5 103 100-208 76-181 (330)
417 2z80_A TOLL-like receptor 2, v 94.1 0.027 9.4E-07 60.5 3.9 106 100-208 52-159 (353)
418 3bz5_A Internalin-J, INLJ; leu 94.0 0.024 8.1E-07 63.7 3.4 94 100-208 64-158 (457)
419 3o53_A Protein LRIM1, AGAP0063 94.0 0.037 1.3E-06 58.6 4.6 98 100-208 10-109 (317)
420 1zgk_A Kelch-like ECH-associat 94.0 2.4 8.3E-05 43.9 18.8 190 465-671 70-290 (308)
421 3bz5_A Internalin-J, INLJ; leu 94.0 0.029 9.8E-07 63.0 3.9 96 100-208 42-137 (457)
422 2z66_A Variable lymphocyte rec 94.0 0.024 8.3E-07 59.4 3.1 107 99-208 100-209 (306)
423 3v47_A TOLL-like receptor 5B a 93.9 0.021 7.3E-07 63.4 2.7 64 143-207 75-138 (455)
424 2id5_A Lingo-1, leucine rich r 93.9 0.012 4.3E-07 65.9 0.8 78 127-207 226-305 (477)
425 3pbp_A Nucleoporin NUP82; beta 93.9 1.8 6.1E-05 47.7 17.6 142 561-707 31-205 (452)
426 3vq2_A TLR4, TOLL-like recepto 93.9 0.018 6.1E-07 66.7 2.0 105 100-208 32-138 (606)
427 4g8a_A TOLL-like receptor 4; l 93.8 0.02 6.7E-07 66.2 2.1 103 100-208 76-183 (635)
428 2be1_A Serine/threonine-protei 93.8 0.12 4E-06 55.7 8.0 196 512-720 11-236 (339)
429 3oja_A Leucine-rich immune mol 93.5 0.039 1.3E-06 62.5 3.8 100 100-209 80-180 (487)
430 4b8c_D Glucose-repressible alc 93.4 0.023 7.7E-07 67.9 1.8 78 126-208 225-303 (727)
431 2xot_A Amphoterin-induced prot 93.3 0.028 9.6E-07 60.8 2.2 79 127-208 41-122 (361)
432 2ft3_A Biglycan; proteoglycan, 93.3 0.023 7.8E-07 60.5 1.5 77 128-208 175-251 (332)
433 3v47_A TOLL-like receptor 5B a 93.3 0.028 9.5E-07 62.4 2.2 80 127-208 32-113 (455)
434 3t6q_A CD180 antigen; protein- 93.3 0.087 3E-06 60.8 6.5 78 127-208 256-335 (606)
435 1io0_A Tropomodulin; LRR prote 93.2 0.12 4E-06 50.3 6.3 114 72-208 37-161 (185)
436 2p1m_B Transport inhibitor res 93.1 0.098 3.4E-06 60.0 6.6 14 195-208 478-491 (594)
437 3vq2_A TLR4, TOLL-like recepto 93.1 0.032 1.1E-06 64.6 2.4 105 100-208 424-531 (606)
438 2uvk_A YJHT; unknown function, 93.1 1.5 5.3E-05 46.4 15.7 196 465-676 65-350 (357)
439 2z81_A CD282 antigen, TOLL-lik 93.1 0.032 1.1E-06 63.6 2.4 105 100-207 74-181 (549)
440 1xku_A Decorin; proteoglycan, 93.1 0.034 1.2E-06 59.1 2.4 105 100-208 145-250 (330)
441 3oja_B Anopheles plasmodium-re 93.1 0.043 1.5E-06 63.7 3.4 102 100-208 99-202 (597)
442 2ft3_A Biglycan; proteoglycan, 92.9 0.038 1.3E-06 58.8 2.5 76 128-206 105-180 (332)
443 2zwa_A Leucine carboxyl methyl 92.9 2.9 9.8E-05 49.3 18.9 199 465-672 397-639 (695)
444 2woz_A Kelch repeat and BTB do 92.8 7.8 0.00027 40.1 20.4 193 465-673 56-292 (318)
445 2z7x_B TOLL-like receptor 1, v 92.8 0.14 4.9E-06 57.8 7.2 82 126-208 303-384 (520)
446 2z7x_B TOLL-like receptor 1, v 92.8 0.053 1.8E-06 61.4 3.5 103 100-208 348-454 (520)
447 3rgz_A Protein brassinosteroid 92.7 0.094 3.2E-06 62.8 5.8 79 127-209 180-258 (768)
448 2z81_A CD282 antigen, TOLL-lik 92.6 0.064 2.2E-06 61.0 3.9 103 100-208 26-133 (549)
449 3j0a_A TOLL-like receptor 5; m 92.5 0.032 1.1E-06 67.6 1.3 103 100-208 48-158 (844)
450 1ogq_A PGIP-2, polygalacturona 92.5 0.051 1.8E-06 57.5 2.7 103 100-207 149-253 (313)
451 4ecn_A Leucine-rich repeat pro 92.3 0.069 2.3E-06 64.9 3.8 103 100-208 515-629 (876)
452 2z63_A TOLL-like receptor 4, v 92.1 0.05 1.7E-06 62.1 2.3 105 100-208 28-134 (570)
453 1ziw_A TOLL-like receptor 3; i 92.1 0.051 1.7E-06 63.8 2.3 62 145-207 478-545 (680)
454 3a79_B TLR6, VLRB.59, TOLL-lik 92.1 0.11 3.9E-06 59.4 5.3 83 125-208 331-413 (562)
455 2z63_A TOLL-like receptor 4, v 92.1 0.057 1.9E-06 61.7 2.6 106 100-208 52-159 (570)
456 3a79_B TLR6, VLRB.59, TOLL-lik 92.0 0.05 1.7E-06 62.4 2.1 57 147-207 450-506 (562)
457 3g39_A Variable lymphocyte rec 91.9 0.062 2.1E-06 51.4 2.4 77 128-208 12-88 (170)
458 2r9u_A Variable lymphocyte rec 91.7 0.08 2.7E-06 51.0 2.8 77 128-208 15-91 (174)
459 3j0a_A TOLL-like receptor 5; m 91.5 0.057 1.9E-06 65.5 1.9 109 98-208 22-133 (844)
460 3ott_A Two-component system se 91.5 26 0.00089 41.1 32.8 229 456-718 24-263 (758)
461 4b8c_D Glucose-repressible alc 91.5 0.061 2.1E-06 64.1 2.1 100 100-206 224-324 (727)
462 1ziw_A TOLL-like receptor 3; i 91.4 0.1 3.4E-06 61.3 3.8 102 100-208 49-155 (680)
463 1cru_A Protein (soluble quinop 91.4 20 0.00069 39.6 22.9 107 594-701 27-162 (454)
464 1ogq_A PGIP-2, polygalacturona 90.9 0.12 4.2E-06 54.5 3.5 106 100-210 125-233 (313)
465 4ay9_X Follicle-stimulating ho 90.9 0.087 3E-06 56.6 2.4 74 127-202 156-230 (350)
466 4ecn_A Leucine-rich repeat pro 90.7 0.14 4.9E-06 62.2 4.3 103 101-208 645-763 (876)
467 2p1m_B Transport inhibitor res 90.7 0.25 8.6E-06 56.5 6.2 126 72-206 106-243 (594)
468 2zwa_A Leucine carboxyl methyl 90.6 5.4 0.00019 46.9 17.7 203 510-717 397-637 (695)
469 3sbq_A Nitrous-oxide reductase 90.4 9.6 0.00033 43.4 18.2 236 468-716 72-409 (638)
470 3b7f_A Glycosyl hydrolase, BNR 89.9 23 0.0008 37.8 21.0 252 455-710 56-367 (394)
471 4eco_A Uncharacterized protein 89.8 0.12 4.1E-06 60.5 2.5 104 100-209 273-388 (636)
472 2g8s_A Glucose/sorbosone dehyd 89.6 23 0.0008 37.5 29.7 151 500-656 19-215 (353)
473 3g06_A SSPH2 (leucine-rich rep 89.6 0.19 6.7E-06 58.6 4.1 72 127-208 223-294 (622)
474 3rgz_A Protein brassinosteroid 89.0 0.16 5.4E-06 60.8 2.8 106 100-208 343-452 (768)
475 1tl2_A L10, protein (tachylect 89.0 5.3 0.00018 40.1 13.3 107 551-665 41-160 (236)
476 4ay9_X Follicle-stimulating ho 88.7 0.094 3.2E-06 56.3 0.5 104 99-211 153-260 (350)
477 2wg3_C Hedgehog-interacting pr 88.3 35 0.0012 37.9 25.6 115 456-571 16-159 (463)
478 3ogk_B Coronatine-insensitive 88.2 0.73 2.5E-05 52.6 7.6 21 100-120 112-132 (592)
479 4eco_A Uncharacterized protein 87.7 0.23 7.7E-06 58.1 2.9 82 102-185 379-470 (636)
480 3cvr_A Invasion plasmid antige 87.3 0.62 2.1E-05 53.7 6.2 68 128-208 103-170 (571)
481 1jl5_A Outer protein YOPM; leu 87.2 0.34 1.2E-05 54.2 3.9 95 100-208 111-205 (454)
482 3das_A Putative oxidoreductase 87.1 6.2 0.00021 42.3 13.6 108 593-702 31-158 (347)
483 2ifg_A High affinity nerve gro 87.0 0.27 9.2E-06 52.4 2.8 75 131-207 14-89 (347)
484 3ogk_B Coronatine-insensitive 86.9 0.73 2.5E-05 52.7 6.5 61 72-133 343-411 (592)
485 1tl2_A L10, protein (tachylect 86.7 12 0.0004 37.6 14.2 182 466-661 4-203 (236)
486 3rw6_A Nuclear RNA export fact 86.1 0.58 2E-05 48.5 4.7 65 145-212 168-234 (267)
487 2ifg_A High affinity nerve gro 86.1 0.29 1E-05 52.1 2.5 76 127-206 33-111 (347)
488 3g06_A SSPH2 (leucine-rich rep 86.0 0.36 1.2E-05 56.4 3.3 94 98-208 38-131 (622)
489 3rw6_A Nuclear RNA export fact 85.5 0.25 8.4E-06 51.3 1.4 79 126-206 171-259 (267)
490 3ei3_A DNA damage-binding prot 84.5 90 0.0031 38.9 36.7 152 552-707 515-676 (1158)
491 2ra8_A Uncharacterized protein 84.3 1.2 4.1E-05 48.2 6.3 153 47-217 82-238 (362)
492 3sb4_A Hypothetical leucine ri 82.6 0.39 1.3E-05 50.9 1.5 105 90-205 216-328 (329)
493 3s25_A Hypothetical 7-bladed b 82.5 49 0.0017 34.3 23.4 195 465-701 24-240 (302)
494 3uc1_A DNA gyrase subunit A; D 82.4 53 0.0018 34.6 23.7 196 465-667 52-278 (327)
495 3cvr_A Invasion plasmid antige 82.4 0.78 2.7E-05 52.9 4.0 74 100-185 100-173 (571)
496 1jl5_A Outer protein YOPM; leu 82.4 0.49 1.7E-05 52.8 2.3 95 100-208 131-225 (454)
497 1sqj_A OXG-RCBH, oligoxylogluc 82.3 88 0.003 37.1 25.2 159 455-615 16-190 (789)
498 3e4g_A ATP synthase subunit S, 81.9 0.96 3.3E-05 43.7 3.8 60 147-209 61-125 (176)
499 1io0_A Tropomodulin; LRR prote 81.3 1.1 3.8E-05 43.2 4.2 132 45-200 40-179 (185)
500 3sbq_A Nitrous-oxide reductase 80.6 6.4 0.00022 44.8 10.3 76 594-669 323-409 (638)
No 1
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=9.5e-38 Score=350.08 Aligned_cols=278 Identities=18% Similarity=0.288 Sum_probs=244.7
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcc
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSI 535 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~ 535 (793)
|++++|+| ++.+|++|+.||+|+|||+.+++....+. +|.+.|.+++|+ +++++|++|+.||+|++||+.+++..
T Consensus 111 V~~~~~~p-~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~--~h~~~V~~v~~~-~~~~~l~sgs~D~~i~iwd~~~~~~~- 185 (410)
T 1vyh_C 111 VTRVIFHP-VFSVMVSASEDATIKVWDYETGDFERTLK--GHTDSVQDISFD-HSGKLLASCSADMTIKLWDFQGFECI- 185 (410)
T ss_dssp EEEEEECS-SSSEEEEEESSSCEEEEETTTCCCCEEEC--CCSSCEEEEEEC-TTSSEEEEEETTSCCCEEETTSSCEE-
T ss_pred EEEEEEcC-CCCEEEEEeCCCeEEEEECCCCcEEEEEe--ccCCcEEEEEEc-CCCCEEEEEeCCCeEEEEeCCCCcee-
Confidence 99999999 89999999999999999999999888876 899999999998 78999999999999999999876531
Q ss_pred cccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeCC
Q 003822 536 RGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFD 615 (793)
Q Consensus 536 ~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~D 615 (793)
... ..|...|.+++|+|++..+++++.|++|++||++++.++.++. +|...|.++.|+|++ .++++|+.|
T Consensus 186 ~~~--------~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~-~h~~~v~~~~~~~~g-~~l~s~s~D 255 (410)
T 1vyh_C 186 RTM--------HGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFT-GHREWVRMVRPNQDG-TLIASCSND 255 (410)
T ss_dssp ECC--------CCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEE-CCSSCEEEEEECTTS-SEEEEEETT
T ss_pred EEE--------cCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEe-CCCccEEEEEECCCC-CEEEEEcCC
Confidence 111 2355789999999999999999999999999999999999998 699999999999999 899999999
Q ss_pred CeEEEEECCCCCccceEEccCCCCeE-EEEEecC--------------------CCEEEEEeCCCeEEEEEcCCCcEEEE
Q 003822 616 QDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPD--------------------DHYLLVSAVDNEVRQLLAVDGRVHLN 674 (793)
Q Consensus 616 g~IrIWDlrt~~~~~~~~l~~~~~~v-sv~fSpd--------------------g~~Lasgs~Dg~I~IwDl~tg~~~~~ 674 (793)
++|++||++++.. ...+.+|...+ +++|+|+ |.+|++|+.|+.|++||+.+++++..
T Consensus 256 ~~v~vwd~~~~~~--~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~ 333 (410)
T 1vyh_C 256 QTVRVWVVATKEC--KAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMT 333 (410)
T ss_dssp SCEEEEETTTCCE--EEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEE
T ss_pred CeEEEEECCCCce--eeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEE
Confidence 9999999998744 44556666665 5999996 77999999999999999999999888
Q ss_pred EeeecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCCCCccceeeeccCCccccCCccEEEEE
Q 003822 675 FGITATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAY 754 (793)
Q Consensus 675 l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva 754 (793)
+. .|...+..++|+|+|. +|++|+.||.| ++||+.+++.+. ++.+|. ..|.+++
T Consensus 334 ~~---~h~~~v~~v~~~~~g~-~l~s~s~D~~i-~vwd~~~~~~~~--~~~~h~-------------------~~v~~l~ 387 (410)
T 1vyh_C 334 LV---GHDNWVRGVLFHSGGK-FILSCADDKTL-RVWDYKNKRCMK--TLNAHE-------------------HFVTSLD 387 (410)
T ss_dssp EE---CCSSCEEEEEECSSSS-CEEEEETTTEE-EEECCTTSCCCE--EEECCS-------------------SCEEEEE
T ss_pred EE---CCCCcEEEEEEcCCCC-EEEEEeCCCeE-EEEECCCCceEE--EEcCCC-------------------CcEEEEE
Confidence 75 4566788999999998 99999999999 999999999888 666655 4799999
Q ss_pred EcCCCCceeeEeeEEEeCCCcEEEEcC
Q 003822 755 TRPSSKSEIVKVNLLASTDHCDKECSH 781 (793)
Q Consensus 755 ~~P~~~~~iv~~~ltaS~Dg~VkvW~~ 781 (793)
|+|+ ...++ +||.||+|++|+.
T Consensus 388 ~~~~-~~~l~----sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 388 FHKT-APYVV----TGSVDQTVKVWEC 409 (410)
T ss_dssp ECSS-SSCEE----EEETTSEEEEEC-
T ss_pred EcCC-CCEEE----EEeCCCcEEEEeC
Confidence 9995 44566 8999999999985
No 2
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1.3e-36 Score=331.44 Aligned_cols=282 Identities=17% Similarity=0.235 Sum_probs=242.0
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcc
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSI 535 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~ 535 (793)
|++++|+| ++++|++|+.||+|+|||+.+++.+..+. .|...|.+++|+ ++++++++|+.|+.|++||+.+.....
T Consensus 58 v~~~~~s~-d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~--~~~~~v~~~~~s-~~~~~l~s~~~d~~v~iw~~~~~~~~~ 133 (340)
T 1got_B 58 IYAMHWGT-DSRLLLSASQDGKLIIWDSYTTNKVHAIP--LRSSWVMTCAYA-PSGNYVACGGLDNICSIYNLKTREGNV 133 (340)
T ss_dssp EEEEEECT-TSSEEEEEETTTEEEEEETTTCCEEEEEE--CSSSCEEEEEEC-TTSSEEEEEETTCEEEEEETTTCSBSC
T ss_pred eEEEEECC-CCCEEEEEeCCCcEEEEECCCCCcceEee--cCCccEEEEEEC-CCCCEEEEEeCCCeEEEEECccCCCcc
Confidence 99999999 99999999999999999999999888877 788999999998 789999999999999999998754311
Q ss_pred cccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeCC
Q 003822 536 RGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFD 615 (793)
Q Consensus 536 ~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~D 615 (793)
... .....|...|.++.|++ ++.+++++.|++|++||+++++.+..+. +|.+.|++++|+|++ .++++|+.|
T Consensus 134 ~~~-----~~~~~h~~~v~~~~~~~-~~~l~s~s~d~~i~~wd~~~~~~~~~~~-~h~~~v~~~~~~~~~-~~l~sg~~d 205 (340)
T 1got_B 134 RVS-----RELAGHTGYLSCCRFLD-DNQIVTSSGDTTCALWDIETGQQTTTFT-GHTGDVMSLSLAPDT-RLFVSGACD 205 (340)
T ss_dssp EEE-----EEEECCSSCEEEEEEEE-TTEEEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEECTTS-SEEEEEETT
T ss_pred eeE-----EEecCCCccEEEEEECC-CCcEEEEECCCcEEEEECCCCcEEEEEc-CCCCceEEEEECCCC-CEEEEEeCC
Confidence 110 11234667899999965 4568899999999999999999999998 699999999999998 899999999
Q ss_pred CeEEEEECCCCCccceEEccCCCCeE-EEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCC
Q 003822 616 QDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNG 694 (793)
Q Consensus 616 g~IrIWDlrt~~~~~~~~l~~~~~~v-sv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg 694 (793)
|+|++||++++. ....+.+|...+ +++|+|+|++|++|+.||.|++||+++++.+..+.. ......+..++|+|+|
T Consensus 206 ~~v~~wd~~~~~--~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~-~~~~~~v~~~~~s~~g 282 (340)
T 1got_B 206 ASAKLWDVREGM--CRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSH-DNIICGITSVSFSKSG 282 (340)
T ss_dssp SCEEEEETTTCS--EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC-TTCCSCEEEEEECTTS
T ss_pred CcEEEEECCCCe--eEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEcc-CCcccceEEEEECCCC
Confidence 999999999874 445566676655 599999999999999999999999999988776642 2233468899999999
Q ss_pred CeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCCCCccceeeeccCCccccCCccEEEEEEcCCCCceeeEeeEEEeCCC
Q 003822 695 RDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKSEIVKVNLLASTDH 774 (793)
Q Consensus 695 ~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~~~~iv~~~ltaS~Dg 774 (793)
. +|++|+.||.| ++||+.+++.+. .+.||. ..|.+++|+|+ ...++ +||.||
T Consensus 283 ~-~l~~g~~d~~i-~vwd~~~~~~~~--~~~~h~-------------------~~v~~~~~s~d-g~~l~----s~s~D~ 334 (340)
T 1got_B 283 R-LLLAGYDDFNC-NVWDALKADRAG--VLAGHD-------------------NRVSCLGVTDD-GMAVA----TGSWDS 334 (340)
T ss_dssp S-EEEEEETTSEE-EEEETTTCCEEE--EEECCS-------------------SCEEEEEECTT-SSCEE----EEETTS
T ss_pred C-EEEEECCCCeE-EEEEcccCcEee--EeecCC-------------------CcEEEEEEcCC-CCEEE----EEcCCc
Confidence 9 99999999999 999999999888 666665 57999999995 44566 899999
Q ss_pred cEEEEc
Q 003822 775 CDKECS 780 (793)
Q Consensus 775 ~VkvW~ 780 (793)
+|++|+
T Consensus 335 ~i~iWd 340 (340)
T 1got_B 335 FLKIWN 340 (340)
T ss_dssp CEEEEC
T ss_pred cEEecC
Confidence 999996
No 3
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.1e-37 Score=342.32 Aligned_cols=290 Identities=15% Similarity=0.149 Sum_probs=230.8
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCC------------CeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcE
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHEN------------ENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSL 523 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t------------~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV 523 (793)
|.+++|+| +|++|++++ |+++++||... +...... .|...|.+++|+ ++ +.|++|+.||+|
T Consensus 33 v~~~~fs~-dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~s-~d-~~l~~~s~dg~v 105 (344)
T 4gqb_B 33 LEAARYRS-DGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGV---QTEAGVADLTWV-GE-RGILVASDSGAV 105 (344)
T ss_dssp EEEEEECT-TSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEE---EESSCEEEEEEE-TT-TEEEEEETTSEE
T ss_pred EEEEEECC-CCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeee---ccCCCEEEEEEe-CC-CeEEEEECCCEE
Confidence 89999999 999999888 77888886321 0111111 355789999998 45 578999999999
Q ss_pred EEEEcCCCCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcC
Q 003822 524 KLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSN 603 (793)
Q Consensus 524 ~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fsp 603 (793)
++||+++++...... .....|...|.+++|+|++..+++++.|++|++||+++++++..+. +|.+.|++++|+|
T Consensus 106 ~lWd~~~~~~~~~~~-----~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~-~h~~~V~~~~~~~ 179 (344)
T 4gqb_B 106 ELWELDENETLIVSK-----FCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYR-AHAAQVTCVAASP 179 (344)
T ss_dssp EEEEECTTSSCEEEE-----EEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEECS
T ss_pred EEEeccCCCceeEee-----ccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEc-CcCCceEEEEecC
Confidence 999999876532111 1233577889999999999999999999999999999999999999 7999999999999
Q ss_pred CCCcEEEEEeCCCeEEEEECCCCCccceEEccCCC-CeEEEEEecC-CCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCC
Q 003822 604 HSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSK-GNVMVCFSPD-DHYLLVSAVDNEVRQLLAVDGRVHLNFGITATG 681 (793)
Q Consensus 604 dg~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~~-~~vsv~fSpd-g~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~ 681 (793)
++..+|++|+.|++|++||+++++....+....+. .+.+++|+|+ ++++++|+.||.|++||+++++++.++. .|
T Consensus 180 ~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~---~h 256 (344)
T 4gqb_B 180 HKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSA---VH 256 (344)
T ss_dssp SCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEE---CC
T ss_pred CCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEc---CC
Confidence 98779999999999999999988544433333333 3456999994 6788999999999999999999988886 46
Q ss_pred CCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCCCCccceeeeccCCccccCCccEEEEEEcCCCCc
Q 003822 682 SSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKS 761 (793)
Q Consensus 682 ~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~~~ 761 (793)
...+..++|+|++..+|++|+.|++| +|||+.+++.+. +.| |.+.|.+++|+|++..
T Consensus 257 ~~~v~~v~fsp~g~~~lasgs~D~~i-~vwd~~~~~~~~---~~~-------------------H~~~V~~v~~sp~~~~ 313 (344)
T 4gqb_B 257 SQCVTGLVFSPHSVPFLASLSEDCSL-AVLDSSLSELFR---SQA-------------------HRDFVRDATWSPLNHS 313 (344)
T ss_dssp SSCEEEEEECSSSSCCEEEEETTSCE-EEECTTCCEEEE---ECC-------------------CSSCEEEEEECSSSTT
T ss_pred CCCEEEEEEccCCCeEEEEEeCCCeE-EEEECCCCcEEE---EcC-------------------CCCCEEEEEEeCCCCe
Confidence 67899999999987689999999999 999999987654 334 4468999999998777
Q ss_pred eeeEeeEEEeCCCcEEEEcCCCCCCCC
Q 003822 762 EIVKVNLLASTDHCDKECSHGQHSRPS 788 (793)
Q Consensus 762 ~iv~~~ltaS~Dg~VkvW~~~~~~~~~ 788 (793)
.++ +||.||+|++|+++....|.
T Consensus 314 lla----s~s~D~~v~~w~v~~~~~~~ 336 (344)
T 4gqb_B 314 LLT----TVGWDHQVVHHVVPTEPLPA 336 (344)
T ss_dssp EEE----EEETTSCEEEEECCC-----
T ss_pred EEE----EEcCCCeEEEEECCCCCCCC
Confidence 777 89999999999998776543
No 4
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=5.1e-37 Score=332.89 Aligned_cols=282 Identities=13% Similarity=0.124 Sum_probs=242.3
Q ss_pred eEEEEEeCC---CCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCC
Q 003822 456 PRQFEYHPS---ISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMP 532 (793)
Q Consensus 456 V~~vafsP~---d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~ 532 (793)
|++++|+|. ++.+|++|+.||+|+||++.+++........+|...|.+++|+ +++.++++++.|++|++||+.+++
T Consensus 35 V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~-~~~~~l~s~s~D~~i~lWd~~~~~ 113 (321)
T 3ow8_A 35 IWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDIS-HTLPIAASSSLDAHIRLWDLENGK 113 (321)
T ss_dssp EEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEEC-SSSSEEEEEETTSEEEEEETTTTE
T ss_pred EEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEEC-CCCCEEEEEeCCCcEEEEECCCCC
Confidence 999999983 4679999999999999999887765554556999999999997 788999999999999999998865
Q ss_pred CcccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEE
Q 003822 533 PSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATS 612 (793)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTg 612 (793)
... ....+...+.+++|+|++..+++++.||.|++||+++++....+. .|...|.+++|+|++ ++|++|
T Consensus 114 ~~~---------~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~-~~~~~v~~~~~spdg-~~lasg 182 (321)
T 3ow8_A 114 QIK---------SIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLD-TRGKFILSIAYSPDG-KYLASG 182 (321)
T ss_dssp EEE---------EEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEE-CSSSCEEEEEECTTS-SEEEEE
T ss_pred EEE---------EEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEec-CCCceEEEEEECCCC-CEEEEE
Confidence 421 112344668899999999999999999999999999999999988 599999999999999 899999
Q ss_pred eCCCeEEEEECCCCCccceEEccCCCCeE-EEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEe
Q 003822 613 SFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYY 691 (793)
Q Consensus 613 s~Dg~IrIWDlrt~~~~~~~~l~~~~~~v-sv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afs 691 (793)
+.||.|++||++++ ..+..+.+|...+ +++|+|+|++|++|+.|+.|++||+.+++....+. .+...+..++|+
T Consensus 183 ~~dg~i~iwd~~~~--~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~---~h~~~v~~~~~s 257 (321)
T 3ow8_A 183 AIDGIINIFDIATG--KLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLS---GHASWVLNVAFC 257 (321)
T ss_dssp ETTSCEEEEETTTT--EEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEEC---CCSSCEEEEEEC
T ss_pred cCCCeEEEEECCCC--cEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEc---CCCCceEEEEEC
Confidence 99999999999987 4456666776655 69999999999999999999999999999877775 466779999999
Q ss_pred eCCCeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCCCCccceeeeccCCccccCCccEEEEEEcCCCCceeeEeeEEEe
Q 003822 692 LNGRDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKSEIVKVNLLAS 771 (793)
Q Consensus 692 pdg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~~~~iv~~~ltaS 771 (793)
|++. +|++|+.|++| ++||+.+++++. ++.+|. ..|.+++|+|+ ...++ +++
T Consensus 258 p~~~-~l~s~s~D~~v-~iwd~~~~~~~~--~~~~h~-------------------~~v~~v~~s~~-g~~l~----s~~ 309 (321)
T 3ow8_A 258 PDDT-HFVSSSSDKSV-KVWDVGTRTCVH--TFFDHQ-------------------DQVWGVKYNGN-GSKIV----SVG 309 (321)
T ss_dssp TTSS-EEEEEETTSCE-EEEETTTTEEEE--EECCCS-------------------SCEEEEEECTT-SSEEE----EEE
T ss_pred CCCC-EEEEEeCCCcE-EEEeCCCCEEEE--EEcCCC-------------------CcEEEEEECCC-CCEEE----EEe
Confidence 9999 99999999999 999999999988 666654 57999999995 45566 899
Q ss_pred CCCcEEEEcCC
Q 003822 772 TDHCDKECSHG 782 (793)
Q Consensus 772 ~Dg~VkvW~~~ 782 (793)
.||+|++|+.+
T Consensus 310 ~d~~i~vwd~p 320 (321)
T 3ow8_A 310 DDQEIHIYDCP 320 (321)
T ss_dssp TTCCEEEEECC
T ss_pred CCCeEEEEeCC
Confidence 99999999964
No 5
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1.9e-36 Score=324.97 Aligned_cols=284 Identities=18% Similarity=0.221 Sum_probs=237.6
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcc
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSI 535 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~ 535 (793)
|++++|+| ++++|++|+.||+|++||+++++.+..+. .|...|.+++|+ +++++|++|+.|++|++||+.+++...
T Consensus 16 V~~~~fsp-~~~~l~s~~~dg~v~lWd~~~~~~~~~~~--~~~~~v~~~~~~-~~~~~l~s~s~d~~i~vwd~~~~~~~~ 91 (304)
T 2ynn_A 16 VKGIDFHP-TEPWVLTTLYSGRVELWNYETQVEVRSIQ--VTETPVRAGKFI-ARKNWIIVGSDDFRIRVFNYNTGEKVV 91 (304)
T ss_dssp EEEEEECS-SSSEEEEEETTSEEEEEETTTTEEEEEEE--CCSSCEEEEEEE-GGGTEEEEEETTSEEEEEETTTCCEEE
T ss_pred eEEEEECC-CCCEEEEEcCCCcEEEEECCCCceeEEee--ccCCcEEEEEEe-CCCCEEEEECCCCEEEEEECCCCcEEE
Confidence 99999999 99999999999999999999999888887 788999999998 789999999999999999999876421
Q ss_pred cccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCc-EEEEEcccCCCCeEEEEEcCCCCcEEEEEeC
Q 003822 536 RGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGR-RLQVFADMHKEHINVVKFSNHSPSIFATSSF 614 (793)
Q Consensus 536 ~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~-~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~ 614 (793)
....|...|.+++|+|++..+++++.|++|++||++++. ....+. +|...|++++|+|.++.+|++|+.
T Consensus 92 ---------~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~-~h~~~v~~v~~~p~~~~~l~sgs~ 161 (304)
T 2ynn_A 92 ---------DFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFE-GHEHFVMCVAFNPKDPSTFASGCL 161 (304)
T ss_dssp ---------EEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEEC-CCCSCEEEEEECTTCTTEEEEEET
T ss_pred ---------EEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhc-ccCCcEEEEEECCCCCCEEEEEeC
Confidence 122466789999999999999999999999999999874 455666 799999999999965589999999
Q ss_pred CCeEEEEECCCCCccceEEccCCCCeEEEEEec--CCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEee
Q 003822 615 DQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSP--DDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYL 692 (793)
Q Consensus 615 Dg~IrIWDlrt~~~~~~~~l~~~~~~vsv~fSp--dg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afsp 692 (793)
|++|++||+++..............+..+.|+| ++++|++|+.|+.|++||+.+++++.++. .|...+..++|+|
T Consensus 162 D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~---~h~~~v~~~~~~p 238 (304)
T 2ynn_A 162 DRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLE---GHMSNVSFAVFHP 238 (304)
T ss_dssp TSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEE---CCSSCEEEEEECS
T ss_pred CCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeC---CCCCCEEEEEECC
Confidence 999999999886544333322223444588876 78899999999999999999999988886 4667789999999
Q ss_pred CCCeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCCCCccceeeeccCCccccCCccEEEEEEcCCCCceeeEeeEEEeC
Q 003822 693 NGRDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKSEIVKVNLLAST 772 (793)
Q Consensus 693 dg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~~~~iv~~~ltaS~ 772 (793)
++. +|++|+.||+| ++||+.+++.++ ++.+|. ..+.+++++|.+...++ .+|+.
T Consensus 239 ~~~-~l~s~s~Dg~i-~iWd~~~~~~~~--~~~~~~-------------------~~~~~~~~~~~~~~~~~---asg~~ 292 (304)
T 2ynn_A 239 TLP-IIISGSEDGTL-KIWNSSTYKVEK--TLNVGL-------------------ERSWCIATHPTGRKNYI---ASGFD 292 (304)
T ss_dssp SSS-EEEEEETTSCE-EEEETTTCCEEE--EECCSS-------------------SSEEEEEECTTCGGGCE---EEEET
T ss_pred CCC-EEEEEcCCCeE-EEEECCCCceee--eccCCC-------------------ccEEEEEECCCCCceEE---EEecC
Confidence 998 99999999999 999999999998 666554 46899999997655433 14554
Q ss_pred CCcEEEEcCCC
Q 003822 773 DHCDKECSHGQ 783 (793)
Q Consensus 773 Dg~VkvW~~~~ 783 (793)
|| +.+|+...
T Consensus 293 ~g-~~~~~~~~ 302 (304)
T 2ynn_A 293 NG-FTVLSLGN 302 (304)
T ss_dssp TE-EEEEECC-
T ss_pred Cc-eEEEEecc
Confidence 44 57887754
No 6
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=8.2e-36 Score=319.45 Aligned_cols=284 Identities=19% Similarity=0.318 Sum_probs=236.8
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcc
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSI 535 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~ 535 (793)
|++++|+| ++++|++|+.||.|++|+..+++....+. +|...|.+++|+ +++++|++|+.||.|++||+++++...
T Consensus 26 v~~~~~s~-~~~~l~s~~~dg~i~iw~~~~~~~~~~~~--~h~~~v~~~~~~-~~~~~l~s~~~d~~i~vwd~~~~~~~~ 101 (312)
T 4ery_A 26 VSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTIS--GHKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLK 101 (312)
T ss_dssp EEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEEEEC--CCSSCEEEEEEC-TTSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred EEEEEECC-CCCEEEEeeCCCeEEEEeCCCcccchhhc--cCCCceEEEEEc-CCCCEEEEECCCCEEEEEECCCCcEEE
Confidence 99999999 89999999999999999999999888776 899999999998 789999999999999999998865421
Q ss_pred cccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeCC
Q 003822 536 RGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFD 615 (793)
Q Consensus 536 ~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~D 615 (793)
....|...|.+++|+|++..+++++.|+.|++||+++++.+..+. +|..+|.+++|+|++ .++++|+.|
T Consensus 102 ---------~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~-~~l~~~~~d 170 (312)
T 4ery_A 102 ---------TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLP-AHSDPVSAVHFNRDG-SLIVSSSYD 170 (312)
T ss_dssp ---------EEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTS-SEEEEEETT
T ss_pred ---------EEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEec-CCCCcEEEEEEcCCC-CEEEEEeCC
Confidence 122455789999999999999999999999999999999999998 699999999999998 899999999
Q ss_pred CeEEEEECCCCCccceEEccCCCCeEEEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCCC
Q 003822 616 QDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNGR 695 (793)
Q Consensus 616 g~IrIWDlrt~~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg~ 695 (793)
|.|++||+++++............+..++|+|+|++|++++.|+.|++||+.+++.+..+..+.... ......+++.+.
T Consensus 171 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 249 (312)
T 4ery_A 171 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEK-YCIFANFSVTGG 249 (312)
T ss_dssp SCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSS-SCCCEEEECSSS
T ss_pred CcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCce-EEEEEEEEeCCC
Confidence 9999999998754333322222334459999999999999999999999999999888776432222 223344554444
Q ss_pred eEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCCCCccceeeeccCCccccCCccEEEEEEcCCCCceeeEeeEEEe--CC
Q 003822 696 DYIVSGSCDEHVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKSEIVKVNLLAS--TD 773 (793)
Q Consensus 696 ~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~~~~iv~~~ltaS--~D 773 (793)
.+|++|+.||.| ++||+.+++.+. .+.+|. ..|.+++|+|+ ...++ +|+ .|
T Consensus 250 ~~l~sg~~dg~i-~vwd~~~~~~~~--~~~~h~-------------------~~v~~~~~~p~-~~~l~----s~~~~~d 302 (312)
T 4ery_A 250 KWIVSGSEDNLV-YIWNLQTKEIVQ--KLQGHT-------------------DVVISTACHPT-ENIIA----SAALEND 302 (312)
T ss_dssp CEEEECCTTSCE-EEEETTTCCEEE--EECCCS-------------------SCEEEEEECSS-SSEEE----EEECTTT
T ss_pred cEEEEECCCCEE-EEEECCCchhhh--hhhccC-------------------CcEEEEeecCc-CCceE----EEEccCC
Confidence 499999999999 999999999988 666665 57999999996 44444 565 69
Q ss_pred CcEEEEcCC
Q 003822 774 HCDKECSHG 782 (793)
Q Consensus 774 g~VkvW~~~ 782 (793)
++|++|+.+
T Consensus 303 ~~i~~W~~d 311 (312)
T 4ery_A 303 KTIKLWKSD 311 (312)
T ss_dssp CCEEEEECC
T ss_pred ccEEEecCC
Confidence 999999875
No 7
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=3e-36 Score=329.55 Aligned_cols=301 Identities=14% Similarity=0.156 Sum_probs=238.6
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEE-eccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCc
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYI-PSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS 534 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l-~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~ 534 (793)
|++++|+| ++++||+|+.||+|+|||+.++...... ...+|...|.+++|+ +++++|++|+.|++|++||+..+...
T Consensus 19 v~~l~~sp-~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~s-p~g~~l~s~s~D~~v~iw~~~~~~~~ 96 (345)
T 3fm0_A 19 CWFLAWNP-AGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWS-PCGNYLASASFDATTCIWKKNQDDFE 96 (345)
T ss_dssp EEEEEECT-TSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEEC-TTSSEEEEEETTSCEEEEEECCC-EE
T ss_pred EEEEEECC-CCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEEC-CCCCEEEEEECCCcEEEEEccCCCeE
Confidence 89999999 9999999999999999999888654332 234899999999998 78999999999999999999875421
Q ss_pred ccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCc---EEEEEcccCCCCeEEEEEcCCCCcEEEE
Q 003822 535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGR---RLQVFADMHKEHINVVKFSNHSPSIFAT 611 (793)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~---~l~~~~~gh~~~V~sv~fspdg~~~LaT 611 (793)
.. .....|...|.+++|+|++..+++++.|++|++||+.++. .+..+. +|...|.+++|+|++ .+|++
T Consensus 97 ~~-------~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~-~h~~~v~~~~~~p~~-~~l~s 167 (345)
T 3fm0_A 97 CV-------TTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLN-SHTQDVKHVVWHPSQ-ELLAS 167 (345)
T ss_dssp EE-------EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEEC-CCCSCEEEEEECSSS-SCEEE
T ss_pred EE-------EEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEec-CcCCCeEEEEECCCC-CEEEE
Confidence 10 1112456789999999999999999999999999998764 455666 699999999999999 89999
Q ss_pred EeCCCeEEEEECCCCCccceEEccCCCCeE-EEEEecCCCEEEEEeCCCeEEEEEcCCC---------------cEEEEE
Q 003822 612 SSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLVSAVDNEVRQLLAVDG---------------RVHLNF 675 (793)
Q Consensus 612 gs~Dg~IrIWDlrt~~~~~~~~l~~~~~~v-sv~fSpdg~~Lasgs~Dg~I~IwDl~tg---------------~~~~~l 675 (793)
|+.|++|++||.+++.......+.+|...+ +++|+|+|++|++|+.|+.|++||...+ +++..+
T Consensus 168 ~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (345)
T 3fm0_A 168 ASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTL 247 (345)
T ss_dssp EETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEE
T ss_pred EeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEe
Confidence 999999999999887555566777877666 5999999999999999999999996332 222222
Q ss_pred eeecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCCCCccceeeeccCCccccCCccEEEEEE
Q 003822 676 GITATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYT 755 (793)
Q Consensus 676 ~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~ 755 (793)
. ..+...+..++|+|++. +|++++.|+.| ++|+..++..... ....+......+|...|.+++|
T Consensus 248 ~--~~h~~~v~~v~~~~~~~-~l~s~~~d~~i-~vw~~~~~~~~~~------------~~~~~~~~~~~~h~~~V~~v~~ 311 (345)
T 3fm0_A 248 S--GFHSRTIYDIAWCQLTG-ALATACGDDAI-RVFQEDPNSDPQQ------------PTFSLTAHLHQAHSQDVNCVAW 311 (345)
T ss_dssp C--SSCSSCEEEEEECTTTC-CEEEEETTSCE-EEEEECTTSCTTS------------CCEEEEEEETTSSSSCEEEEEE
T ss_pred c--CCCCCcEEEEEEecCCC-EEEEEeCCCeE-EEEEeCCCCCcce------------eeEEEEeeecccccCcEeEeEE
Confidence 2 23567899999999998 99999999999 9999876542110 0000111223467789999999
Q ss_pred cCCCCceeeEeeEEEeCCCcEEEEcCCCCCCC
Q 003822 756 RPSSKSEIVKVNLLASTDHCDKECSHGQHSRP 787 (793)
Q Consensus 756 ~P~~~~~iv~~~ltaS~Dg~VkvW~~~~~~~~ 787 (793)
+|++...++ +||.||+|++|+.....++
T Consensus 312 ~p~~~~~la----S~s~Dg~v~~W~~~~~~~~ 339 (345)
T 3fm0_A 312 NPKEPGLLA----SCSDDGEVAFWKYQRPEGL 339 (345)
T ss_dssp CSSSTTEEE----EEETTSCEEEEEECC----
T ss_pred eCCCceEEE----EcCCCCcEEEEEecCCCCc
Confidence 998767777 9999999999998877654
No 8
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=2.6e-35 Score=323.69 Aligned_cols=286 Identities=15% Similarity=0.194 Sum_probs=242.6
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcc
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSI 535 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~ 535 (793)
|++++|+| ++.+|++|+.||+|+|||..+++....+. .|...|.+++|+ +++..+++|+.|+.+++|++.......
T Consensus 67 V~~~~~s~-d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~--~~~~~v~~~~~s-p~g~~lasg~~d~~i~v~~~~~~~~~~ 142 (354)
T 2pbi_B 67 VLCMDWCK-DKRRIVSSSQDGKVIVWDSFTTNKEHAVT--MPCTWVMACAYA-PSGCAIACGGLDNKCSVYPLTFDKNEN 142 (354)
T ss_dssp EEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEE--CSSSCCCEEEEC-TTSSEEEEESTTSEEEEEECCCCTTCC
T ss_pred EEEEEECC-CCCEEEEEeCCCeEEEEECCCCCcceEEe--cCCCCEEEEEEC-CCCCEEEEeeCCCCEEEEEEecccccc
Confidence 99999999 89999999999999999999998888776 678899999998 799999999999999999997643211
Q ss_pred cccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCC-CcEEEEEeC
Q 003822 536 RGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHS-PSIFATSSF 614 (793)
Q Consensus 536 ~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg-~~~LaTgs~ 614 (793)
.. ........|...|.+++|+|++..+++++.|++|++||+++++.+..+. +|...|.+++|+|.. +.+|++|+.
T Consensus 143 ~~---~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~g~~l~sgs~ 218 (354)
T 2pbi_B 143 MA---AKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFH-GHGADVLCLDLAPSETGNTFVSGGC 218 (354)
T ss_dssp SG---GGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEE-CCSSCEEEEEECCCSSCCEEEEEET
T ss_pred cc---ccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEc-CCCCCeEEEEEEeCCCCCEEEEEeC
Confidence 10 0112233567889999999999999999999999999999999999998 699999999998852 279999999
Q ss_pred CCeEEEEECCCCCccceEEccCCCCeE-EEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeC
Q 003822 615 DQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLN 693 (793)
Q Consensus 615 Dg~IrIWDlrt~~~~~~~~l~~~~~~v-sv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspd 693 (793)
||+|++||+++++ .+..+.+|...+ +++|+|+|.+|++|+.|+.|++||+++++.+..+.. ......+..++|+|+
T Consensus 219 Dg~v~~wd~~~~~--~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~-~~~~~~~~~~~~s~~ 295 (354)
T 2pbi_B 219 DKKAMVWDMRSGQ--CVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSK-ESIIFGASSVDFSLS 295 (354)
T ss_dssp TSCEEEEETTTCC--EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC-TTCCSCEEEEEECTT
T ss_pred CCeEEEEECCCCc--EEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcC-CCcccceeEEEEeCC
Confidence 9999999999984 445566666655 599999999999999999999999999887666542 122346788999999
Q ss_pred CCeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCCCCccceeeeccCCccccCCccEEEEEEcCCCCceeeEeeEEEeCC
Q 003822 694 GRDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKSEIVKVNLLASTD 773 (793)
Q Consensus 694 g~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~~~~iv~~~ltaS~D 773 (793)
|. +|++|+.|+.| ++||+.+++.+. .+.+|. ..|.+++|+|++ ..++ +||.|
T Consensus 296 g~-~l~~g~~d~~i-~vwd~~~~~~~~--~l~~h~-------------------~~v~~l~~spdg-~~l~----sgs~D 347 (354)
T 2pbi_B 296 GR-LLFAGYNDYTI-NVWDVLKGSRVS--ILFGHE-------------------NRVSTLRVSPDG-TAFC----SGSWD 347 (354)
T ss_dssp SS-EEEEEETTSCE-EEEETTTCSEEE--EECCCS-------------------SCEEEEEECTTS-SCEE----EEETT
T ss_pred CC-EEEEEECCCcE-EEEECCCCceEE--EEECCC-------------------CcEEEEEECCCC-CEEE----EEcCC
Confidence 99 99999999999 999999999888 666655 579999999964 4566 89999
Q ss_pred CcEEEEc
Q 003822 774 HCDKECS 780 (793)
Q Consensus 774 g~VkvW~ 780 (793)
|+|++|+
T Consensus 348 ~~v~vW~ 354 (354)
T 2pbi_B 348 HTLRVWA 354 (354)
T ss_dssp SEEEEEC
T ss_pred CCEEecC
Confidence 9999995
No 9
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1e-36 Score=335.54 Aligned_cols=292 Identities=16% Similarity=0.201 Sum_probs=232.8
Q ss_pred ceEEEEEeCCCCCEEEEEeC------CCeEEEEECCCCeEEEEE--eccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEE
Q 003822 455 RPRQFEYHPSISCLMVFGTL------DGEIVVVNHENENIVSYI--PSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLY 526 (793)
Q Consensus 455 ~V~~vafsP~d~~~Lasgs~------DG~I~VWd~~t~~~i~~l--~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vW 526 (793)
.|++++|+| ||++||+|+. ||.|++|+..++.....+ ...+|...|.+++|+ +++ .+++++.||+|++|
T Consensus 44 ~V~~v~fSp-DG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s-~d~-~~l~~s~dg~v~lW 120 (357)
T 4g56_B 44 QIGAVRYRR-DGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWV-SEK-GILVASDSGAVELW 120 (357)
T ss_dssp EEEEEEECS-SSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEE-TTT-EEEEEETTSCEEEC
T ss_pred CEEEEEECC-CCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEc-CCC-CEEEEECCCEEEEe
Confidence 499999999 9999999997 788999998776543221 112688899999998 555 56778899999999
Q ss_pred EcCCCCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCC
Q 003822 527 DIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSP 606 (793)
Q Consensus 527 Dl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~ 606 (793)
|+.+++..... ......|...|.+++|+|++..+++++.|+.|++||+++++.+..+. +|...|++++|+|++.
T Consensus 121 d~~~~~~~~~~-----~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~-~h~~~v~~v~~s~~~~ 194 (357)
T 4g56_B 121 EILEKESLLVN-----KFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYN-AHSSEVNCVAACPGKD 194 (357)
T ss_dssp --------CCC-----CEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEECTTCS
T ss_pred eccccceeEEE-----eeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEc-CCCCCEEEEEEccCCC
Confidence 99887642211 11233567889999999999999999999999999999999999998 6999999999999986
Q ss_pred cEEEEEeCCCeEEEEECCCCCccceEEccCCCC-eEEEEEecC-CCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCC
Q 003822 607 SIFATSSFDQDVKLWDLRQKPIQPCYTASSSKG-NVMVCFSPD-DHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQ 684 (793)
Q Consensus 607 ~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~~~-~vsv~fSpd-g~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~ 684 (793)
.++++++.||+|++||+++++.........+.. +.+++|+|+ +.+|++|+.|+.|++||+.+++.+..+. .+...
T Consensus 195 ~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~---~~~~~ 271 (357)
T 4g56_B 195 TIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSA---VHSQN 271 (357)
T ss_dssp SCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEEC---CCSSC
T ss_pred ceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEe---cccee
Confidence 789999999999999999886555544444444 446999997 5688999999999999999999888775 45677
Q ss_pred cEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCCCCccceeeeccCCccccCCccEEEEEEcCCCCceee
Q 003822 685 NYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKSEIV 764 (793)
Q Consensus 685 v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~~~~iv 764 (793)
+..++|+|++..+|++|+.|++| +|||+.+++.+. .+ + |...|.+++|+|.....++
T Consensus 272 v~~l~~sp~~~~~lasgs~D~~i-~iwd~~~~~~~~--~~-~-------------------H~~~V~~vafsP~d~~~l~ 328 (357)
T 4g56_B 272 ITGLAYSYHSSPFLASISEDCTV-AVLDADFSEVFR--DL-S-------------------HRDFVTGVAWSPLDHSKFT 328 (357)
T ss_dssp EEEEEECSSSSCCEEEEETTSCE-EEECTTSCEEEE--EC-C-------------------CSSCEEEEEECSSSTTEEE
T ss_pred EEEEEEcCCCCCEEEEEeCCCEE-EEEECCCCcEeE--EC-C-------------------CCCCEEEEEEeCCCCCEEE
Confidence 89999999987689999999999 999999998876 22 3 4468999999996666677
Q ss_pred EeeEEEeCCCcEEEEcCCCCC
Q 003822 765 KVNLLASTDHCDKECSHGQHS 785 (793)
Q Consensus 765 ~~~ltaS~Dg~VkvW~~~~~~ 785 (793)
+||.||+|++|+++...
T Consensus 329 ----s~s~Dg~v~iW~~~~~~ 345 (357)
T 4g56_B 329 ----TVGWDHKVLHHHLPSEG 345 (357)
T ss_dssp ----EEETTSCEEEEECC---
T ss_pred ----EEcCCCeEEEEECCCCC
Confidence 99999999999987654
No 10
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.8e-35 Score=327.76 Aligned_cols=299 Identities=16% Similarity=0.214 Sum_probs=243.6
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcc
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSI 535 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~ 535 (793)
|++++|+| ++++|++|+.||+|+|||+.+++....+. .|...|.+++|+ +++++|++|+.|+.|++||+.+.....
T Consensus 69 V~~~~~sp-~~~~l~s~s~D~~v~iWd~~~~~~~~~~~--~h~~~v~~~~~s-~~g~~las~~~d~~v~iw~~~~~~~~~ 144 (380)
T 3iz6_a 69 VYSLDWTP-EKNWIVSASQDGRLIVWNALTSQKTHAIK--LHCPWVMECAFA-PNGQSVACGGLDSACSIFNLSSQADRD 144 (380)
T ss_dssp EEEEEECT-TSSCEEEEETTSEEEEEETTTTEEEEEEE--CCCTTCCCCEEC-TTSSEEEECCSSSCCEEEECCCCSSCC
T ss_pred EEEEEEcC-CCCEEEEEeCCCeEEEEECCCCccceEEe--cCCCCEEEEEEC-CCCCEEEEeeCCCcEEEEECCCCcccc
Confidence 99999999 89999999999999999999999888887 789999999998 799999999999999999997643211
Q ss_pred cccccCCceeEecCCCCeEEEEEccCCC-EEEEEECCCcEEEEECCCCcEEEEEc----ccCCCCeEEEEEcCCCCcEEE
Q 003822 536 RGMHYGAGTVTFDEFDQLTSVHVNSMDE-LFLASGYSKNIALYDINSGRRLQVFA----DMHKEHINVVKFSNHSPSIFA 610 (793)
Q Consensus 536 ~~~~~~~~~~~~~~~~~V~sv~~s~~~~-~lla~g~Dg~I~IWDl~tg~~l~~~~----~gh~~~V~sv~fspdg~~~La 610 (793)
... ........|...|.++.|.|.++ .+++++.|++|++||+.+++.+..+. .+|...|.+++|+|.++.+|+
T Consensus 145 ~~~--~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~ 222 (380)
T 3iz6_a 145 GNM--PVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFI 222 (380)
T ss_dssp CSS--TTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEE
T ss_pred CCc--cceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEE
Confidence 000 00111234557788899988754 58888899999999999999988872 269999999999885448999
Q ss_pred EEeCCCeEEEEECCCCCccceEEccCCCCeE-EEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCC----CCCc
Q 003822 611 TSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATG----SSQN 685 (793)
Q Consensus 611 Tgs~Dg~IrIWDlrt~~~~~~~~l~~~~~~v-sv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~----~~~v 685 (793)
+|+.|++|++||++... ..+..+.+|...+ +++|+|+|++|++|+.||+|++||+.+++.+..+...... ...+
T Consensus 223 sgs~D~~v~~wd~~~~~-~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v 301 (380)
T 3iz6_a 223 SGSCDTTVRLWDLRITS-RAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIV 301 (380)
T ss_dssp EEETTSCEEEEETTTTC-CCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSC
T ss_pred EEECCCeEEEEECCCCC-cceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCce
Confidence 99999999999998532 3445666776655 6999999999999999999999999999988877543221 1247
Q ss_pred EEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCCCCccceeeeccCCccccCCccEEEEEEcCCCCceeeE
Q 003822 686 YTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKSEIVK 765 (793)
Q Consensus 686 ~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~~~~iv~ 765 (793)
..++|+|+|+ +|++|+.||.| ++||+.+++.+. .+... ..+|.+.|.+++|+|++ ..++
T Consensus 302 ~~~~~s~~g~-~l~~g~~dg~i-~vwd~~~~~~~~--~~~~~---------------~~~h~~~v~~l~~s~dg-~~l~- 360 (380)
T 3iz6_a 302 TSVAFSISGR-LLFAGYSNGDC-YVWDTLLAEMVL--NLGTL---------------QNSHEGRISCLGLSSDG-SALC- 360 (380)
T ss_dssp SEEEECSSSS-EEEEECTTSCE-EEEETTTCCEEE--EECCS---------------CSSCCCCCCEEEECSSS-SEEE-
T ss_pred EEEEECCCCC-EEEEEECCCCE-EEEECCCCceEE--EEecc---------------cCCCCCceEEEEECCCC-CEEE-
Confidence 8999999999 99999999999 999999999887 44221 13566789999999964 4566
Q ss_pred eeEEEeCCCcEEEEcCCCCC
Q 003822 766 VNLLASTDHCDKECSHGQHS 785 (793)
Q Consensus 766 ~~ltaS~Dg~VkvW~~~~~~ 785 (793)
+||.||+|++|+...+.
T Consensus 361 ---sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 361 ---TGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp ---EECTTSCEEEEECCSSS
T ss_pred ---EeeCCCCEEEEecCCCc
Confidence 89999999999987653
No 11
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=4.2e-34 Score=309.09 Aligned_cols=286 Identities=12% Similarity=0.154 Sum_probs=235.2
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCC-----eEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCC
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENE-----NIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRH 530 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~-----~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~ 530 (793)
|++++|+|.++++|++|+.||+|++|++... ..+..+. +|...|.+++|+ +++++|++|+.|++|++||+.+
T Consensus 20 V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~--~h~~~v~~~~~s-~dg~~l~s~s~D~~v~~wd~~~ 96 (319)
T 3frx_A 20 VTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFK--GHSHIVQDCTLT-ADGAYALSASWDKTLRLWDVAT 96 (319)
T ss_dssp EEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEE--CCSSCEEEEEEC-TTSSEEEEEETTSEEEEEETTT
T ss_pred EEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEe--CCcccEEEEEEC-CCCCEEEEEeCCCEEEEEECCC
Confidence 9999999966689999999999999998642 2344454 899999999997 7999999999999999999988
Q ss_pred CCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCC-----
Q 003822 531 MPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHS----- 605 (793)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg----- 605 (793)
++.. .....|...|.+++|+|++..+++++.|++|++||++ ++.+..+. +|...|.++.|+|.+
T Consensus 97 ~~~~---------~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~-~h~~~v~~~~~~~~~~~~~~ 165 (319)
T 3frx_A 97 GETY---------QRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLL-GHNDWVSQVRVVPNEKADDD 165 (319)
T ss_dssp TEEE---------EEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEEC-CCSSCEEEEEECCC------
T ss_pred CCee---------EEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEe-ccCCcEEEEEEccCCCCCCC
Confidence 6541 1123466889999999999999999999999999997 56777887 699999999999853
Q ss_pred CcEEEEEeCCCeEEEEECCCCCccceEEccCCCCeE-EEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCC
Q 003822 606 PSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQ 684 (793)
Q Consensus 606 ~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~~~~v-sv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~ 684 (793)
...+++++.|+.|++||+++. .....+.+|...+ +++|+|+|++|++|+.||.|++||+.+++.+..+. ++..
T Consensus 166 ~~~l~s~~~d~~i~~wd~~~~--~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~----~~~~ 239 (319)
T 3frx_A 166 SVTIISAGNDKMVKAWNLNQF--QIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLS----AQDE 239 (319)
T ss_dssp CCEEEEEETTSCEEEEETTTT--EEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEE----CCSC
T ss_pred ccEEEEEeCCCEEEEEECCcc--hhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEec----CCCc
Confidence 248999999999999999886 3445566776665 59999999999999999999999999999888775 4567
Q ss_pred cEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCCCCccceeeeccCCccccCCccEEEEEEcCCCCceee
Q 003822 685 NYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKSEIV 764 (793)
Q Consensus 685 v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~~~~iv 764 (793)
+..++|+|++. ++++++.+ .+ ++|++.++..+. .+..+.. .....|...|.+++|+|+ ...++
T Consensus 240 v~~~~~sp~~~-~la~~~~~-~i-~v~~~~~~~~~~--~~~~~~~-----------~~~~~~~~~v~~~~~spd-g~~l~ 302 (319)
T 3frx_A 240 VFSLAFSPNRY-WLAAATAT-GI-KVFSLDPQYLVD--DLRPEFA-----------GYSKAAEPHAVSLAWSAD-GQTLF 302 (319)
T ss_dssp EEEEEECSSSS-EEEEEETT-EE-EEEEETTEEEEE--EECCCCT-----------TCCGGGCCCEEEEEECTT-SSEEE
T ss_pred EEEEEEcCCCC-EEEEEcCC-Cc-EEEEeCcCeeee--ccCcccc-----------ccccCcCcceeEEEECCC-CCEEE
Confidence 99999999998 78777755 57 999999988877 5544321 111245567999999996 44555
Q ss_pred EeeEEEeCCCcEEEEcCC
Q 003822 765 KVNLLASTDHCDKECSHG 782 (793)
Q Consensus 765 ~~~ltaS~Dg~VkvW~~~ 782 (793)
+|+.||+|++|+..
T Consensus 303 ----sg~~Dg~i~vWd~~ 316 (319)
T 3frx_A 303 ----AGYTDNVIRVWQVM 316 (319)
T ss_dssp ----EEETTSCEEEEEEE
T ss_pred ----EeecCceEEEEEEe
Confidence 89999999999864
No 12
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=1.3e-33 Score=314.26 Aligned_cols=283 Identities=15% Similarity=0.219 Sum_probs=230.0
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEecc----------------CCCCCEEEEEEeeCCCCEEEEEEc
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSF----------------GAMNSVLGLCWLKKYPSKLIAGSD 519 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~----------------~h~~~V~sv~fs~~~g~~Lasgs~ 519 (793)
|++++|+| ++++||+|+ +++++||++.+++.+..+... .+...|.+++|+ +++++|++|+.
T Consensus 67 V~~v~fsp-dg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s-~dg~~l~s~~~ 143 (393)
T 1erj_A 67 VCCVKFSN-DGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFS-PDGKFLATGAE 143 (393)
T ss_dssp CCEEEECT-TSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEEC-TTSSEEEEEET
T ss_pred EEEEEECC-CCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEEC-CCCCEEEEEcC
Confidence 89999999 999999987 689999999999887776521 112249999998 79999999999
Q ss_pred CCcEEEEEcCCCCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEE
Q 003822 520 NGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVV 599 (793)
Q Consensus 520 DgtV~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv 599 (793)
||+|++||+.+++.. .....|...|.+++|+|++..+++++.|++|++||+++++....+. +...+.++
T Consensus 144 d~~i~iwd~~~~~~~---------~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~--~~~~v~~~ 212 (393)
T 1erj_A 144 DRLIRIWDIENRKIV---------MILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS--IEDGVTTV 212 (393)
T ss_dssp TSCEEEEETTTTEEE---------EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE--CSSCEEEE
T ss_pred CCeEEEEECCCCcEE---------EEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE--cCCCcEEE
Confidence 999999999876431 1122456789999999999999999999999999999999988887 67889999
Q ss_pred EEcC-CCCcEEEEEeCCCeEEEEECCCCCccceEE-----ccCCCCeE-EEEEecCCCEEEEEeCCCeEEEEEcCCCc--
Q 003822 600 KFSN-HSPSIFATSSFDQDVKLWDLRQKPIQPCYT-----ASSSKGNV-MVCFSPDDHYLLVSAVDNEVRQLLAVDGR-- 670 (793)
Q Consensus 600 ~fsp-dg~~~LaTgs~Dg~IrIWDlrt~~~~~~~~-----l~~~~~~v-sv~fSpdg~~Lasgs~Dg~I~IwDl~tg~-- 670 (793)
+|+| ++ .++++|+.||.|++||++++....... ..+|...+ +++|+|+|++|++|+.|+.|++||+.++.
T Consensus 213 ~~~~~~~-~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~ 291 (393)
T 1erj_A 213 AVSPGDG-KYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNK 291 (393)
T ss_dssp EECSTTC-CEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC------
T ss_pred EEECCCC-CEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCc
Confidence 9999 55 899999999999999999875433221 13455544 69999999999999999999999997643
Q ss_pred ----------EEEEEeeecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCCCCccceeeeccC
Q 003822 671 ----------VHLNFGITATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLRG 740 (793)
Q Consensus 671 ----------~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g 740 (793)
+...+. .+...+..++|+|++. +|++|+.|+.| ++||+.+++.+. .+.+|.
T Consensus 292 ~~~~~~~~~~~~~~~~---~h~~~v~~~~~~~~~~-~l~sgs~D~~v-~iwd~~~~~~~~--~l~~h~------------ 352 (393)
T 1erj_A 292 SDSKTPNSGTCEVTYI---GHKDFVLSVATTQNDE-YILSGSKDRGV-LFWDKKSGNPLL--MLQGHR------------ 352 (393)
T ss_dssp ---------CEEEEEE---CCSSCEEEEEECGGGC-EEEEEETTSEE-EEEETTTCCEEE--EEECCS------------
T ss_pred ccccCCCCCcceEEEe---cccCcEEEEEECCCCC-EEEEEeCCCeE-EEEECCCCeEEE--EECCCC------------
Confidence 223332 4566789999999998 99999999999 999999999988 776665
Q ss_pred CccccCCccEEEEEEcCCC-----CceeeEeeEEEeCCCcEEEEcCCC
Q 003822 741 DPFRDFNMSILAAYTRPSS-----KSEIVKVNLLASTDHCDKECSHGQ 783 (793)
Q Consensus 741 ~~~~~h~~~V~sva~~P~~-----~~~iv~~~ltaS~Dg~VkvW~~~~ 783 (793)
..|.+++|+|.. ...++ +||.||+|++|+...
T Consensus 353 -------~~v~~v~~~~~~~~~p~~~~l~----sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 353 -------NSVISVAVANGSSLGPEYNVFA----TGSGDCKARIWKYKK 389 (393)
T ss_dssp -------SCEEEEEECSSCTTCTTCEEEE----EEETTSEEEEEEEEE
T ss_pred -------CCEEEEEecCCcCcCCCCCEEE----EECCCCcEEECcccc
Confidence 479999998742 33455 899999999999754
No 13
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-33 Score=307.32 Aligned_cols=291 Identities=14% Similarity=0.182 Sum_probs=219.2
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCC--eEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCC
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENE--NIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPP 533 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~--~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~ 533 (793)
|++++|+| + +||+|+.||+|++||+.++ .....+...+|...|.+++|+ +++++|++|+.|++|++||++....
T Consensus 17 v~~~~~s~-~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~s-p~~~~las~s~D~~v~iw~~~~~~~ 92 (330)
T 2hes_X 17 IWSFDFSQ-G--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWR-PHTSLLAAGSFDSTVSIWAKEESAD 92 (330)
T ss_dssp EEEEEEET-T--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEEC-TTSSEEEEEETTSCEEEEEC-----
T ss_pred eeeeccCC-C--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEEC-CCCCEEEEEeCCCcEEEEEcccCcC
Confidence 99999999 4 9999999999999999875 344445332499999999998 7899999999999999999965321
Q ss_pred cccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCC----CcEEEEEcccCCCCeEEEEEcCCCCcEE
Q 003822 534 SIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINS----GRRLQVFADMHKEHINVVKFSNHSPSIF 609 (793)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~t----g~~l~~~~~gh~~~V~sv~fspdg~~~L 609 (793)
..... ........|...|.+++|+|++.++++++.|++|++||++. .+++..+. +|...|++++|+|++ .+|
T Consensus 93 ~~~~~--~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~-~h~~~v~~v~~~p~~-~~l 168 (330)
T 2hes_X 93 RTFEM--DLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQ-EHSQDVKHVIWHPSE-ALL 168 (330)
T ss_dssp --CCC--EEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEEC-CCSSCEEEEEECSSS-SEE
T ss_pred ccccc--eeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEec-cCCCceEEEEECCCC-CEE
Confidence 00000 00011224668899999999999999999999999999953 25677777 699999999999998 899
Q ss_pred EEEeCCCeEEEEECCCCCccceEEccCCCCeE-EEEEecC--CCEEEEEeCCCeEEEEEcCCC--------cEEEEEeee
Q 003822 610 ATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPD--DHYLLVSAVDNEVRQLLAVDG--------RVHLNFGIT 678 (793)
Q Consensus 610 aTgs~Dg~IrIWDlrt~~~~~~~~l~~~~~~v-sv~fSpd--g~~Lasgs~Dg~I~IwDl~tg--------~~~~~l~~~ 678 (793)
++|+.|++|++||.+++...++..+.+|...+ +++|+|+ +.+|++|+.|++|++||+.++ .....+ .
T Consensus 169 ~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~--~ 246 (330)
T 2hes_X 169 ASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAIL--P 246 (330)
T ss_dssp EEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEEC--C
T ss_pred EEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeec--c
Confidence 99999999999999876445566777787666 5999998 789999999999999998654 222222 1
Q ss_pred cCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcE--EEeeeecCCCCCccceeeeccCCccccCCc-cEEEEEE
Q 003822 679 ATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRR--LRDISLEGKGSGTSMFVQSLRGDPFRDFNM-SILAAYT 755 (793)
Q Consensus 679 ~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~--l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~-~V~sva~ 755 (793)
..+...+..++|++++ +|++|+.||.| ++||..+++. +. .. ..+|.. .|.+++|
T Consensus 247 ~~h~~~v~~v~~s~~~--~l~s~~~dg~v-~iw~~~~~~~~~~~--~~------------------~~~h~~~~v~~v~~ 303 (330)
T 2hes_X 247 DVHKRQVYNVAWGFNG--LIASVGADGVL-AVYEEVDGEWKVFA--KR------------------ALCHGVYEINVVKW 303 (330)
T ss_dssp SCCSSCEEEEEECTTS--CEEEEETTSCE-EEEEEETTEEEEEE--EE------------------SCTTTTSCEEEEEE
T ss_pred cccccceEEEEEcCCC--EEEEEeCCCEE-EEEEcCCCceEEEe--cc------------------ccccccceEEEEEE
Confidence 2256789999999665 79999999999 9999987742 22 11 113344 7999999
Q ss_pred cCC-CCceeeEeeEEEeCCCcEEEEcCCC
Q 003822 756 RPS-SKSEIVKVNLLASTDHCDKECSHGQ 783 (793)
Q Consensus 756 ~P~-~~~~iv~~~ltaS~Dg~VkvW~~~~ 783 (793)
+|. ....++ +||.||+|++|+...
T Consensus 304 ~~~~~~~~la----s~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 304 LELNGKTILA----TGGDDGIVNFWSLEK 328 (330)
T ss_dssp C-----CCEE----EEETTSEEEEEEC--
T ss_pred ecCCCceEEE----EecCCCcEEEEEecc
Confidence 995 344566 899999999999754
No 14
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=5.2e-33 Score=298.77 Aligned_cols=298 Identities=15% Similarity=0.163 Sum_probs=240.3
Q ss_pred ccCCCCCCCCcccceEEEEEeCCCCCEEEEEeCCCeEEEEECCCCe-----EEEEEeccCCCCCEEEEEEeeCCCCEEEE
Q 003822 442 VSGNHMGDENRSFRPRQFEYHPSISCLMVFGTLDGEIVVVNHENEN-----IVSYIPSFGAMNSVLGLCWLKKYPSKLIA 516 (793)
Q Consensus 442 ~~g~~~~~~~~~~~V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~-----~i~~l~~~~h~~~V~sv~fs~~~g~~Las 516 (793)
+.||... |++|+|+|.++++||||+.||+|+|||+.+++ ....+ .+|...|.+++|+ +++++|++
T Consensus 34 L~GH~~~-------V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l--~~h~~~V~~~~~s-~dg~~l~s 103 (340)
T 4aow_A 34 LKGHNGW-------VTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRAL--RGHSHFVSDVVIS-SDGQFALS 103 (340)
T ss_dssp ECCCSSC-------EEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEE--CCCSSCEEEEEEC-TTSSEEEE
T ss_pred ECCccCC-------EEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEE--eCCCCCEEEEEEC-CCCCEEEE
Confidence 4577653 99999999667899999999999999987643 33444 4899999999998 79999999
Q ss_pred EEcCCcEEEEEcCCCCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCCe
Q 003822 517 GSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHI 596 (793)
Q Consensus 517 gs~DgtV~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V 596 (793)
|+.|+.|++|+....... .....+...+..+.+.+.+..+++++.|+.+++||+...........+|...+
T Consensus 104 ~~~d~~i~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v 174 (340)
T 4aow_A 104 GSWDGTLRLWDLTTGTTT---------RRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWV 174 (340)
T ss_dssp EETTSEEEEEETTTTEEE---------EEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCE
T ss_pred EcccccceEEeeccccee---------eeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcc
Confidence 999999999999875432 11223446678888889999999999999999999987766555545799999
Q ss_pred EEEEEcCCCC-cEEEEEeCCCeEEEEECCCCCccceEEccCCCCeE-EEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEE
Q 003822 597 NVVKFSNHSP-SIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLN 674 (793)
Q Consensus 597 ~sv~fspdg~-~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~~~~v-sv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~ 674 (793)
..++|++++. .++++++.|+.|++||++++ .....+.+|...+ +++|+|+|++|++|+.||.|++||+.+++.+..
T Consensus 175 ~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~--~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~ 252 (340)
T 4aow_A 175 SCVRFSPNSSNPIIVSCGWDKLVKVWNLANC--KLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYT 252 (340)
T ss_dssp EEEEECSCSSSCEEEEEETTSCEEEEETTTT--EEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEE
T ss_pred cceEEccCCCCcEEEEEcCCCEEEEEECCCC--ceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeee
Confidence 9999998753 57889999999999999987 4455566676665 599999999999999999999999999998887
Q ss_pred EeeecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCCCCccceeeeccCCccccCCccEEEEE
Q 003822 675 FGITATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAY 754 (793)
Q Consensus 675 l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva 754 (793)
+. ++..+..+.|+|++. +++++.|+.| ++||+.++..+. .+.++. ......+|...|.+++
T Consensus 253 ~~----~~~~v~~~~~~~~~~--~~~~~~d~~i-~iwd~~~~~~~~--~~~~~~----------~~~~~~~h~~~v~~l~ 313 (340)
T 4aow_A 253 LD----GGDIINALCFSPNRY--WLCAATGPSI-KIWDLEGKIIVD--ELKQEV----------ISTSSKAEPPQCTSLA 313 (340)
T ss_dssp EE----CSSCEEEEEECSSSS--EEEEEETTEE-EEEETTTTEEEE--EECCC-----------------CCCCCEEEEE
T ss_pred ec----CCceEEeeecCCCCc--eeeccCCCEE-EEEECCCCeEEE--eccccc----------eeeeccCCCCCEEEEE
Confidence 75 456788999999875 6677789999 999999999888 665543 1123446778999999
Q ss_pred EcCCCCceeeEeeEEEeCCCcEEEEcCCCC
Q 003822 755 TRPSSKSEIVKVNLLASTDHCDKECSHGQH 784 (793)
Q Consensus 755 ~~P~~~~~iv~~~ltaS~Dg~VkvW~~~~~ 784 (793)
|+|++ ..++ +|+.||+|++|++...
T Consensus 314 ~s~dg-~~l~----sgs~Dg~v~iW~~~tG 338 (340)
T 4aow_A 314 WSADG-QTLF----AGYTDNLVRVWQVTIG 338 (340)
T ss_dssp ECTTS-SEEE----EEETTSCEEEEEEEC-
T ss_pred ECCCC-CEEE----EEeCCCEEEEEeCCCc
Confidence 99964 4555 8999999999997543
No 15
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=2e-33 Score=331.34 Aligned_cols=297 Identities=11% Similarity=0.117 Sum_probs=233.6
Q ss_pred ceEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCc
Q 003822 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS 534 (793)
Q Consensus 455 ~V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~ 534 (793)
.|++++|+|.....|++|+.|++|++||..+++....+. +|...|.+++|+ +++++|++|+.|++|++||+.+++..
T Consensus 149 ~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~--~H~~~V~~v~fs-pdg~~las~s~D~~i~lwd~~~g~~~ 225 (611)
T 1nr0_A 149 AMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFG--EHTKFVHSVRYN-PDGSLFASTGGDGTIVLYNGVDGTKT 225 (611)
T ss_dssp CEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEEC--CCSSCEEEEEEC-TTSSEEEEEETTSCEEEEETTTCCEE
T ss_pred CceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeec--cccCceEEEEEC-CCCCEEEEEECCCcEEEEECCCCcEe
Confidence 399999999333479999999999999999888887776 899999999998 78999999999999999999886642
Q ss_pred ccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEc-------------------------
Q 003822 535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFA------------------------- 589 (793)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~------------------------- 589 (793)
..... .......|...|.+++|+|++..+++++.|++|++||+.+++.+.++.
T Consensus 226 ~~~~~--~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d 303 (611)
T 1nr0_A 226 GVFED--DSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISAN 303 (611)
T ss_dssp EECBC--TTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETT
T ss_pred eeecc--ccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCC
Confidence 11100 000112467889999999999999999999999999999877654331
Q ss_pred -----------------ccCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEECCCCCccceE--------------------
Q 003822 590 -----------------DMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCY-------------------- 632 (793)
Q Consensus 590 -----------------~gh~~~V~sv~fspdg~~~LaTgs~Dg~IrIWDlrt~~~~~~~-------------------- 632 (793)
.+|...|++++|+|++ .+|++++.|++|++||+.++......
T Consensus 304 ~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg-~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~ 382 (611)
T 1nr0_A 304 GFINFVNPELGSIDQVRYGHNKAITALSSSADG-KTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLF 382 (611)
T ss_dssp CCEEEEETTTTEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEE
T ss_pred CcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCC-CEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEE
Confidence 2689999999999999 89999999999999999865321100
Q ss_pred -------------------------------------------------------------EccCCCCeEEEEEecCCCE
Q 003822 633 -------------------------------------------------------------TASSSKGNVMVCFSPDDHY 651 (793)
Q Consensus 633 -------------------------------------------------------------~l~~~~~~vsv~fSpdg~~ 651 (793)
.+.....+.+++|+|+|++
T Consensus 383 s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~ 462 (611)
T 1nr0_A 383 TVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQF 462 (611)
T ss_dssp EEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCE
T ss_pred EEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCE
Confidence 0000112346899999999
Q ss_pred EEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCC-CcEEEeeeecCCCCC
Q 003822 652 LLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQT-GRRLRDISLEGKGSG 730 (793)
Q Consensus 652 Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~t-g~~l~~~~L~gh~~~ 730 (793)
|++|+.|+.|++||+.++...... . ..+...+..++|+|+|+ +|++++.|++| ++|++.+ ++.+. .
T Consensus 463 lasgs~D~~v~lwd~~~~~~~~~~-~-~~h~~~v~~v~fspdg~-~las~s~d~~v-~~w~~~~~~~~~~--~------- 529 (611)
T 1nr0_A 463 VAVGGQDSKVHVYKLSGASVSEVK-T-IVHPAEITSVAFSNNGA-FLVATDQSRKV-IPYSVANNFELAH--T------- 529 (611)
T ss_dssp EEEEETTSEEEEEEEETTEEEEEE-E-EECSSCEEEEEECTTSS-EEEEEETTSCE-EEEEGGGTTEESC--C-------
T ss_pred EEEeCCCCeEEEEEccCCceeeee-c-cCCCCceEEEEECCCCC-EEEEEcCCCCE-EEEEcCCCCceee--e-------
Confidence 999999999999999877542211 1 24667899999999999 99999999999 9999987 44433 1
Q ss_pred ccceeeeccCCccccCCccEEEEEEcCCCCceeeEeeEEEeCCCcEEEEcCCCCC
Q 003822 731 TSMFVQSLRGDPFRDFNMSILAAYTRPSSKSEIVKVNLLASTDHCDKECSHGQHS 785 (793)
Q Consensus 731 ~s~~v~sl~g~~~~~h~~~V~sva~~P~~~~~iv~~~ltaS~Dg~VkvW~~~~~~ 785 (793)
..+.+|...|.+++|+|+ ...++ +||.|++|++|+.....
T Consensus 530 ----------~~~~~H~~~V~~v~fspd-g~~la----sgs~D~~v~lW~~~~~~ 569 (611)
T 1nr0_A 530 ----------NSWTFHTAKVACVSWSPD-NVRLA----TGSLDNSVIVWNMNKPS 569 (611)
T ss_dssp ----------CCCCCCSSCEEEEEECTT-SSEEE----EEETTSCEEEEETTCTT
T ss_pred ----------eeeeecccceeEEEECCC-CCEEE----EEECCCcEEEEECCCcc
Confidence 012246678999999996 44566 89999999999987644
No 16
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-32 Score=296.41 Aligned_cols=294 Identities=15% Similarity=0.175 Sum_probs=247.0
Q ss_pred CceeeeeccCCCCCCCCcccceEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEE
Q 003822 435 PCLHTLTVSGNHMGDENRSFRPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKL 514 (793)
Q Consensus 435 p~~~~l~~~g~~~~~~~~~~~V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~L 514 (793)
.......+.||... |++++|+| ++++|++|+.||.|++||+.+++.+..+. +|...|.+++|+ +++++|
T Consensus 21 ~~~~~~~l~~h~~~-------v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~--~h~~~v~~~~~~-~~~~~l 89 (369)
T 3zwl_B 21 SHMKAIKLTGHERP-------LTQVKYNK-EGDLLFSCSKDSSASVWYSLNGERLGTLD--GHTGTIWSIDVD-CFTKYC 89 (369)
T ss_dssp CSEEEEEEECCSSC-------EEEEEECT-TSCEEEEEESSSCEEEEETTTCCEEEEEC--CCSSCEEEEEEC-TTSSEE
T ss_pred cccccEEEEEeece-------EEEEEEcC-CCCEEEEEeCCCEEEEEeCCCchhhhhhh--hcCCcEEEEEEc-CCCCEE
Confidence 34445555667653 99999999 99999999999999999999999988876 899999999998 689999
Q ss_pred EEEEcCCcEEEEEcCCCCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEECC-----CcEEEEECCCCc------
Q 003822 515 IAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYS-----KNIALYDINSGR------ 583 (793)
Q Consensus 515 asgs~DgtV~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~D-----g~I~IWDl~tg~------ 583 (793)
++++.||+|++||+.+++. ...+.+...|.+++|+|++..+++++.+ |.|++||+..+.
T Consensus 90 ~s~~~dg~i~iwd~~~~~~----------~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~ 159 (369)
T 3zwl_B 90 VTGSADYSIKLWDVSNGQC----------VATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELT 159 (369)
T ss_dssp EEEETTTEEEEEETTTCCE----------EEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEE
T ss_pred EEEeCCCeEEEEECCCCcE----------EEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeec
Confidence 9999999999999998654 2234466789999999999999999988 999999998653
Q ss_pred -----EEEEEcccCCC--CeEEEEEcCCCCcEEEEEeCCCeEEEEECCCCCccceEEccCCCCeE-EEEEecCCCEEEEE
Q 003822 584 -----RLQVFADMHKE--HINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLVS 655 (793)
Q Consensus 584 -----~l~~~~~gh~~--~V~sv~fspdg~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~~~~v-sv~fSpdg~~Lasg 655 (793)
.+..+. .|.. .+.+++|+|++ .++++++.||.|++||+++.. .....+..+...+ +++|+|++++|+++
T Consensus 160 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 236 (369)
T 3zwl_B 160 KVSEEPIHKII-THEGLDAATVAGWSTKG-KYIIAGHKDGKISKYDVSNNY-EYVDSIDLHEKSISDMQFSPDLTYFITS 236 (369)
T ss_dssp EECSSCSEEEE-CCTTCCCEEEEEECGGG-CEEEEEETTSEEEEEETTTTT-EEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred ccccceeeecc-CCcCccceeEEEEcCCC-CEEEEEcCCCEEEEEECCCCc-EeEEEEecCCCceeEEEECCCCCEEEEe
Confidence 333444 4666 99999999998 899999999999999999832 3445555555544 69999999999999
Q ss_pred eCCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCCCeEEEEEeCCC--------------cEEEEEEcCCCcEEEe
Q 003822 656 AVDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNGRDYIVSGSCDE--------------HVVRICCAQTGRRLRD 721 (793)
Q Consensus 656 s~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg--------------~II~IWDv~tg~~l~~ 721 (793)
+.|+.|++||+.+++.+..+. +...+..++|+|++. ++++++.++ .+ ++||..+++.+.
T Consensus 237 ~~d~~i~v~d~~~~~~~~~~~----~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~i-~~~d~~~~~~~~- 309 (369)
T 3zwl_B 237 SRDTNSFLVDVSTLQVLKKYE----TDCPLNTAVITPLKE-FIILGGGQEAKDVTTTSANEGKFEA-RFYHKIFEEEIG- 309 (369)
T ss_dssp ETTSEEEEEETTTCCEEEEEE----CSSCEEEEEECSSSS-EEEEEECCC-------------CEE-EEEETTTCCEEE-
T ss_pred cCCceEEEEECCCCceeeeec----CCCCceeEEecCCCc-eEEEeecCCCceEEEEecCCCccee-EEEecCCCcchh-
Confidence 999999999999999988875 566788999999999 899988888 67 999999999988
Q ss_pred eeecCCCCCccceeeeccCCccccCCccEEEEEEcCCCCceeeEeeEEEeCCCcEEEEcCCCC
Q 003822 722 ISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKSEIVKVNLLASTDHCDKECSHGQH 784 (793)
Q Consensus 722 ~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~~~~iv~~~ltaS~Dg~VkvW~~~~~ 784 (793)
.+.+|. ..|.+++|+|+ ...++ +|+.||.|++|+....
T Consensus 310 -~~~~~~-------------------~~v~~~~~s~~-~~~l~----s~~~dg~v~iw~~~~~ 347 (369)
T 3zwl_B 310 -RVQGHF-------------------GPLNTVAISPQ-GTSYA----SGGEDGFIRLHHFEKS 347 (369)
T ss_dssp -EEECCS-------------------SCEEEEEECTT-SSEEE----EEETTSEEEEEEECHH
T ss_pred -heeccc-------------------CcEEEEEECCC-CCEEE----EEcCCCeEEEEECccc
Confidence 666654 57999999995 44555 8999999999998653
No 17
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1.9e-32 Score=298.78 Aligned_cols=291 Identities=17% Similarity=0.191 Sum_probs=225.7
Q ss_pred eEEEEE-----eCCCCCEEEEEeCCCeEEEEECCCC-------eEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcE
Q 003822 456 PRQFEY-----HPSISCLMVFGTLDGEIVVVNHENE-------NIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSL 523 (793)
Q Consensus 456 V~~vaf-----sP~d~~~Lasgs~DG~I~VWd~~t~-------~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV 523 (793)
|++++| +|.++.+|++|+.||+|++||+.++ .....+. +|...|.+++|+ +++.++++|+.|++|
T Consensus 24 V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~--~h~~~V~~~~~~-~~~~~l~s~s~D~~v 100 (343)
T 2xzm_R 24 VTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALT--GHNHFVSDLALS-QENCFAISSSWDKTL 100 (343)
T ss_dssp EEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEEC--CCSSCEEEEEEC-SSTTEEEEEETTSEE
T ss_pred hhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhc--cCCCceEEEEEC-CCCCEEEEEcCCCcE
Confidence 999999 6658899999999999999998753 3344444 899999999998 789999999999999
Q ss_pred EEEEcCCCCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEc--ccCCCCeEEEEE
Q 003822 524 KLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFA--DMHKEHINVVKF 601 (793)
Q Consensus 524 ~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~--~gh~~~V~sv~f 601 (793)
++||+++++.. .....|...|.+++|+|++..+++++.|++|++||+... ...... .+|...|.+++|
T Consensus 101 ~lwd~~~~~~~---------~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~v~~~~~ 170 (343)
T 2xzm_R 101 RLWDLRTGTTY---------KRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGE-CKFSSAEKENHSDWVSCVRY 170 (343)
T ss_dssp EEEETTSSCEE---------EEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSC-EEEECCTTTSCSSCEEEEEE
T ss_pred EEEECCCCcEE---------EEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCC-ceeeeecccCCCceeeeeee
Confidence 99999986541 112346688999999999999999999999999999843 333332 258899999999
Q ss_pred cCCCC---------cEEEEEeCCCeEEEEECCCCCccceEEccCCCCeE-EEEEecCCCEEEEEeCCCeEEEEEcCC-Cc
Q 003822 602 SNHSP---------SIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLVSAVDNEVRQLLAVD-GR 670 (793)
Q Consensus 602 spdg~---------~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~~~~v-sv~fSpdg~~Lasgs~Dg~I~IwDl~t-g~ 670 (793)
+|++. .++++++.||.|++||.+. .....+.+|...+ +++|+|+|++|++|+.||.|++||+.+ +.
T Consensus 171 ~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~---~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~ 247 (343)
T 2xzm_R 171 SPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF---QIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTY 247 (343)
T ss_dssp CCCCCSCSCCCSSCCEEEEEETTSEEEEEETTT---EEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSS
T ss_pred ccccccccccCCCCCEEEEEcCCCEEEEEcCCC---ceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcc
Confidence 99862 5899999999999999543 3444555666555 599999999999999999999999944 44
Q ss_pred EEEEEeeecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCCCCccceeeeccCCccccCCccE
Q 003822 671 VHLNFGITATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSI 750 (793)
Q Consensus 671 ~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V 750 (793)
....+. +...+..++|+|++. +++ ++.|+.+ ++||+.+++......+..+.. .......+|...|
T Consensus 248 ~~~~~~----~~~~v~~v~~sp~~~-~la-~~~d~~v-~iw~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~v 312 (343)
T 2xzm_R 248 PQREFD----AGSTINQIAFNPKLQ-WVA-VGTDQGV-KIFNLMTQSKAPVCTIEAEPI--------TKAEGQKGKNPQC 312 (343)
T ss_dssp CSEEEE----CSSCEEEEEECSSSC-EEE-EEESSCE-EEEESSSCCSCSEEECCCCSG--------GGBTTBCCSCCCE
T ss_pred cceeec----CCCcEEEEEECCCCC-EEE-EECCCCE-EEEEeCCCCCCceEEeecCcc--------hhhhhhcCCCCce
Confidence 434442 344689999999987 665 5567788 999999887654223332220 0112234677889
Q ss_pred EEEEEcCCCCceeeEeeEEEeCCCcEEEEcCC
Q 003822 751 LAAYTRPSSKSEIVKVNLLASTDHCDKECSHG 782 (793)
Q Consensus 751 ~sva~~P~~~~~iv~~~ltaS~Dg~VkvW~~~ 782 (793)
.+++|+|++ ..++ +|+.||+|++|+..
T Consensus 313 ~~~~~sp~g-~~l~----sg~~Dg~v~~w~~~ 339 (343)
T 2xzm_R 313 TSLAWNALG-KKLF----AGFTDGVIRTFSFE 339 (343)
T ss_dssp EEEEECSSS-CCEE----EEETTSEEEEEEEE
T ss_pred EEEEECCCC-CeEE----EecCCceEEEEEEE
Confidence 999999964 4555 89999999999864
No 18
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=8.8e-35 Score=327.91 Aligned_cols=294 Identities=20% Similarity=0.273 Sum_probs=224.3
Q ss_pred ceEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCc
Q 003822 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS 534 (793)
Q Consensus 455 ~V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~ 534 (793)
+|+|++|||.++.+||+|+.||+|+|||+.+++....+...+|.+.|++|+|+|.++++|++|+.||+|++||++++...
T Consensus 121 ~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~ 200 (435)
T 4e54_B 121 RATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILR 200 (435)
T ss_dssp CEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEE
T ss_pred CEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCcee
Confidence 49999999988889999999999999999988766666667999999999999768899999999999999999864321
Q ss_pred ccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeC
Q 003822 535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSF 614 (793)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~ 614 (793)
. ...+ ..+...+.+++|++++..+++++.||.|++||++ ++.+..+. +|...|++++|+|+++.++++|+.
T Consensus 201 ~--~~~~-----~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~-~h~~~v~~v~~~p~~~~~~~s~s~ 271 (435)
T 4e54_B 201 V--FASS-----DTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLR-MHKKKVTHVALNPCCDWFLATASV 271 (435)
T ss_dssp E--EECC-----SSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSB-CCSSCEEEEEECTTCSSEEEEEET
T ss_pred E--Eecc-----CCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEe-cccceEEeeeecCCCceEEEEecC
Confidence 1 0000 0122457889999999999999999999999997 55667777 699999999999998779999999
Q ss_pred CCeEEEEECCCCCccceE-EccCCCCeE-EEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCC---CCCcEEEE
Q 003822 615 DQDVKLWDLRQKPIQPCY-TASSSKGNV-MVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATG---SSQNYTRS 689 (793)
Q Consensus 615 Dg~IrIWDlrt~~~~~~~-~l~~~~~~v-sv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~---~~~v~s~a 689 (793)
|++|++||+++......+ ...+|...+ +++|+|+|++|++++.||.|++||+.++.....+..+... ........
T Consensus 272 d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (435)
T 4e54_B 272 DQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAA 351 (435)
T ss_dssp TSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCE
T ss_pred cceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEE
Confidence 999999999986543322 233455544 6999999999999999999999999999877766432211 11234456
Q ss_pred EeeCCCeEEEEEe------------CCCcEEEEEEcCCCcEEEeeeecCCCCCccceeeeccCCccccCCccEEEE-EEc
Q 003822 690 YYLNGRDYIVSGS------------CDEHVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAA-YTR 756 (793)
Q Consensus 690 fspdg~~~L~Sgs------------~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sv-a~~ 756 (793)
|+|++. ++++++ .++.| ++||..+|+.+. .+.++ |...|.++ +|+
T Consensus 352 ~~~~~~-~~~~~~~~d~~~~~~~~~~~~~i-~iwd~~~g~~~~--~l~~~------------------~~~~v~s~~~fs 409 (435)
T 4e54_B 352 WHPRYN-LIVVGRYPDPNFKSCTPYELRTI-DVFDGNSGKMMC--QLYDP------------------ESSGISSLNEFN 409 (435)
T ss_dssp ECSSSS-CEEEECCCCTTSCCSSTTCCCCE-EEECSSSCCEEE--EECCS------------------SCCCCCCEEEEC
T ss_pred EcCCCC-EEEEEEcCCCCeEEEEecCCCEE-EEEECCCCcEEE--EEeCC------------------CCCcEEEEEEEC
Confidence 667666 444443 33467 999999999988 55432 23456666 699
Q ss_pred CCCCceeeEeeEEEeCCCcEEEEcCCCCC
Q 003822 757 PSSKSEIVKVNLLASTDHCDKECSHGQHS 785 (793)
Q Consensus 757 P~~~~~iv~~~ltaS~Dg~VkvW~~~~~~ 785 (793)
|++ ..++ ++.|++|++|+.....
T Consensus 410 pdg-~~la-----sg~d~~i~iW~~~~gk 432 (435)
T 4e54_B 410 PMG-DTLA-----SAMGYHILIWSQQEAR 432 (435)
T ss_dssp TTS-SCEE-----EECSSEEEECCCC---
T ss_pred CCC-CEEE-----EEcCCcEEEEECCcCe
Confidence 964 2333 4458899999987654
No 19
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=7.9e-33 Score=304.70 Aligned_cols=289 Identities=19% Similarity=0.205 Sum_probs=230.0
Q ss_pred eEEEEEeCCCC-CEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCc
Q 003822 456 PRQFEYHPSIS-CLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS 534 (793)
Q Consensus 456 V~~vafsP~d~-~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~ 534 (793)
|++++|+| ++ ++|++|+.||.|+|||+.+++....+...+|...|.+++|+|.++++|++++.|++|++||+++...
T Consensus 76 v~~~~~~~-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~- 153 (383)
T 3ei3_B 76 VTSLEWHP-THPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVI- 153 (383)
T ss_dssp EEEEEECS-SCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCEE-
T ss_pred EEEEEECC-CCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCce-
Confidence 99999999 66 9999999999999999999888877776689999999999844789999999999999999985321
Q ss_pred ccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeC
Q 003822 535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSF 614 (793)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~ 614 (793)
..... ...+...|.+++|+|++..+++++.|+.|++||+ +++.+..+. +|...|.+++|+|+++.++++|+.
T Consensus 154 -~~~~~-----~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~-~h~~~v~~~~~~~~~~~~l~s~~~ 225 (383)
T 3ei3_B 154 -QVFAK-----TDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEK-LHKAKVTHAEFNPRCDWLMATSSV 225 (383)
T ss_dssp -EEEEC-----CCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEE-CSSSCEEEEEECSSCTTEEEEEET
T ss_pred -EEEec-----cCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEec-cCCCcEEEEEECCCCCCEEEEEeC
Confidence 11110 1123367999999999999999999999999999 588888888 699999999999999449999999
Q ss_pred CCeEEEEECCCCC--ccceEEccCCCCeEEEEEec-CCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCC----------
Q 003822 615 DQDVKLWDLRQKP--IQPCYTASSSKGNVMVCFSP-DDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATG---------- 681 (793)
Q Consensus 615 Dg~IrIWDlrt~~--~~~~~~l~~~~~~vsv~fSp-dg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~---------- 681 (793)
|+.|++||+++.. ............+.+++|+| +|++|++++.|+.|++||+.+++....+..+...
T Consensus 226 d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (383)
T 3ei3_B 226 DATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKA 305 (383)
T ss_dssp TSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCC
T ss_pred CCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEE
Confidence 9999999999732 12333343334455699999 9999999999999999999998876666532211
Q ss_pred ----CCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCCCCccceeeeccCCccccCCccEEEEEEcC
Q 003822 682 ----SSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRP 757 (793)
Q Consensus 682 ----~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P 757 (793)
......++|+|+|. + +|+.||.| ++||+.+++.+. ++.++. |...+..++|+|
T Consensus 306 ~~~p~~~~~~~~~s~dg~-~--s~s~d~~i-~iwd~~~~~~~~--~l~~~~-----------------~~~~~~~~~~s~ 362 (383)
T 3ei3_B 306 TWHPMYDLIVAGRYPDDQ-L--LLNDKRTI-DIYDANSGGLVH--QLRDPN-----------------AAGIISLNKFSP 362 (383)
T ss_dssp EECSSSSEEEEECBCCTT-T--CTTCCCCE-EEEETTTCCEEE--EECBTT-----------------BCSCCCEEEECT
T ss_pred eccCCCCceEEEecCCcc-c--ccCCCCeE-EEEecCCCceee--eecCCC-----------------CCceEEEEEEec
Confidence 12344466677776 3 77899999 999999999998 776643 234567789999
Q ss_pred CCCceeeEeeEEEeCCCcEEEEcCCC
Q 003822 758 SSKSEIVKVNLLASTDHCDKECSHGQ 783 (793)
Q Consensus 758 ~~~~~iv~~~ltaS~Dg~VkvW~~~~ 783 (793)
++ ..++ +|+ ||.|++|+...
T Consensus 363 ~g-~~l~----s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 363 TG-DVLA----SGM-GFNILIWNRED 382 (383)
T ss_dssp TS-SEEE----EEE-TTEEEEEECC-
T ss_pred Cc-cEEE----Eec-CCcEEEEecCC
Confidence 64 3444 665 99999999864
No 20
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=2.1e-32 Score=297.88 Aligned_cols=306 Identities=12% Similarity=0.084 Sum_probs=238.3
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCe--EEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCC
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENEN--IVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPP 533 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~--~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~ 533 (793)
|++++|+| ++++|++|+.||.|++||+.+++ .+..+. +|...|.+++|+ +++++|++++.||.|++||+++++.
T Consensus 11 i~~~~~s~-~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~--~h~~~v~~~~~~-~~~~~l~~~~~dg~i~vwd~~~~~~ 86 (372)
T 1k8k_C 11 ISCHAWNK-DRTQIAICPNNHEVHIYEKSGNKWVQVHELK--EHNGQVTGVDWA-PDSNRIVTCGTDRNAYVWTLKGRTW 86 (372)
T ss_dssp CCEEEECT-TSSEEEEECSSSEEEEEEEETTEEEEEEEEE--CCSSCEEEEEEE-TTTTEEEEEETTSCEEEEEEETTEE
T ss_pred eEEEEECC-CCCEEEEEeCCCEEEEEeCCCCcEEeeeeec--CCCCcccEEEEe-CCCCEEEEEcCCCeEEEEECCCCee
Confidence 89999999 89999999999999999999987 666665 899999999998 6899999999999999999987542
Q ss_pred cccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCc---EEEEEcccCCCCeEEEEEcCCCCcEEE
Q 003822 534 SIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGR---RLQVFADMHKEHINVVKFSNHSPSIFA 610 (793)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~---~l~~~~~gh~~~V~sv~fspdg~~~La 610 (793)
... .....+...|.+++|+|++..+++++.|+.|++||++.+. ....+..+|...|.+++|+|++ .+|+
T Consensus 87 ~~~-------~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~ 158 (372)
T 1k8k_C 87 KPT-------LVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNS-VLLA 158 (372)
T ss_dssp EEE-------EECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTS-SEEE
T ss_pred eee-------EEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCC-CEEE
Confidence 111 1113455789999999999999999999999999999876 3444544789999999999998 8999
Q ss_pred EEeCCCeEEEEECCC----------------CCccceEEccCCCCeE-EEEEecCCCEEEEEeCCCeEEEEEcCCCcEEE
Q 003822 611 TSSFDQDVKLWDLRQ----------------KPIQPCYTASSSKGNV-MVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHL 673 (793)
Q Consensus 611 Tgs~Dg~IrIWDlrt----------------~~~~~~~~l~~~~~~v-sv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~ 673 (793)
+|+.||.|++||++. ........+.+|...+ +++|+|++++|++++.|+.|++||+.+++.+.
T Consensus 159 ~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~ 238 (372)
T 1k8k_C 159 AGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVA 238 (372)
T ss_dssp EEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEE
T ss_pred EEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeE
Confidence 999999999999752 1224455666666655 59999999999999999999999999999988
Q ss_pred EEeeecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCC--CcEEEeeeecCCCCCc-------cce-----eeecc
Q 003822 674 NFGITATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQT--GRRLRDISLEGKGSGT-------SMF-----VQSLR 739 (793)
Q Consensus 674 ~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~t--g~~l~~~~L~gh~~~~-------s~~-----v~sl~ 739 (793)
.+. .+...+..++|+|++. ++++| .|+.+ ++|++.+ |+....-.+..+.... ..| .....
T Consensus 239 ~~~---~~~~~v~~~~~~~~~~-~l~~~-~d~~i-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (372)
T 1k8k_C 239 TLA---SETLPLLAVTFITESS-LVAAG-HDCFP-VLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSE 312 (372)
T ss_dssp EEE---CSSCCEEEEEEEETTE-EEEEE-TTSSC-EEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---
T ss_pred EEc---cCCCCeEEEEEecCCC-EEEEE-eCCeE-EEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccc
Confidence 876 3556789999999997 77776 89999 9999988 6321100222211000 000 00000
Q ss_pred ------CCccccCCccEEEEEEcCCCC---ceeeEeeEEEeCCCcEEEEcCCC
Q 003822 740 ------GDPFRDFNMSILAAYTRPSSK---SEIVKVNLLASTDHCDKECSHGQ 783 (793)
Q Consensus 740 ------g~~~~~h~~~V~sva~~P~~~---~~iv~~~ltaS~Dg~VkvW~~~~ 783 (793)
..-..+|...|.+++|+|... ..++ +|+.||+|++|+...
T Consensus 313 ~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~----s~~~Dg~i~~W~~~~ 361 (372)
T 1k8k_C 313 GSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFC----TTGMDGGMSIWDVRS 361 (372)
T ss_dssp ------CCCSSSSSSCEEEEEEEESTTTSCSEEE----EEETTSEEEEEEHHH
T ss_pred cCccccccccccccCCcceeEEecCCCcceeeEE----EecCCCceEEEEecC
Confidence 111248889999999886554 6777 999999999999643
No 21
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-33 Score=316.65 Aligned_cols=312 Identities=11% Similarity=0.126 Sum_probs=234.4
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCC---CeEEE-EEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcC--
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHEN---ENIVS-YIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIR-- 529 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t---~~~i~-~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~-- 529 (793)
|++++|+|.++.+|++|+.||+|+|||+.+ +.... .... +|...|.+++|+ +++++|++|+.||+|++||++
T Consensus 66 V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~-~~~~~l~s~s~dg~i~vwd~~~~ 143 (437)
T 3gre_A 66 ITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMI-PNFDAFAVSSKDGQIIVLKVNHY 143 (437)
T ss_dssp EEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEEC-TTSSEEEEEETTSEEEEEEEEEE
T ss_pred eEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEe-CCCCEEEEEeCCCEEEEEEeccc
Confidence 999999997788999999999999999876 43211 1111 588999999998 789999999999999999995
Q ss_pred -CCCCcccccccC-CceeEec---CCCCeEEEE--EccCCCEEEEEECCCcEEEEECCCCcEEEEEccc-CCCCeEEEEE
Q 003822 530 -HMPPSIRGMHYG-AGTVTFD---EFDQLTSVH--VNSMDELFLASGYSKNIALYDINSGRRLQVFADM-HKEHINVVKF 601 (793)
Q Consensus 530 -~~~~~~~~~~~~-~~~~~~~---~~~~V~sv~--~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~g-h~~~V~sv~f 601 (793)
+++.. .....+ ...+.+. +...+.++. +++++..+++++.||.|++||+++++.+..+... |.+.|++++|
T Consensus 144 ~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~ 222 (437)
T 3gre_A 144 QQESEV-KFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICI 222 (437)
T ss_dssp EETTEE-EEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEE
T ss_pred cCCcee-eccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEE
Confidence 33321 111111 1111121 456677777 5567888999999999999999999999999832 8999999999
Q ss_pred cCCCCcEEEEEeCCCeEEEEECCCCCccceEEccCCCCeEEEEEe----cCCCEEEEEeCCCeEEEEEcCCCcEEEEEee
Q 003822 602 SNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFS----PDDHYLLVSAVDNEVRQLLAVDGRVHLNFGI 677 (793)
Q Consensus 602 spdg~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~~~~vsv~fS----pdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~ 677 (793)
+|++ .+|++|+.||.|++||++++.....+...++..+.+++|+ |++.+|++|+.||.|++||+.+++.+..+..
T Consensus 223 s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 301 (437)
T 3gre_A 223 DEEC-CVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFIN 301 (437)
T ss_dssp CTTS-CEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEES
T ss_pred CCCC-CEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEc
Confidence 9998 8999999999999999998744333333444445568555 5688999999999999999999998888763
Q ss_pred ec-----------------------CCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCCCCccce
Q 003822 678 TA-----------------------TGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKGSGTSMF 734 (793)
Q Consensus 678 ~~-----------------------~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~ 734 (793)
+. .+...+..++|+ ++. +|++|+.||.| ++||+.+++.+. .+.+|......+
T Consensus 302 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~-~l~s~~~d~~i-~~wd~~~~~~~~--~~~~~~~~~~~~ 376 (437)
T 3gre_A 302 SDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDK-ILLTDEATSSI-VMFSLNELSSSK--AVISPSRFSDVF 376 (437)
T ss_dssp SSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTE-EEEEEGGGTEE-EEEETTCGGGCE--EEECC--CCCEE
T ss_pred CCCCCccceecccccccccceecccccCCceEEEEEC-Cce-EEEecCCCCeE-EEEECCCcccce--EEecccccCceE
Confidence 21 134457888999 665 99999999999 999999999998 888875333222
Q ss_pred eeec------------------cCCccccCCccEEEEEEcCCC-CceeeEeeEEEeCCCcEEEEc
Q 003822 735 VQSL------------------RGDPFRDFNMSILAAYTRPSS-KSEIVKVNLLASTDHCDKECS 780 (793)
Q Consensus 735 v~sl------------------~g~~~~~h~~~V~sva~~P~~-~~~iv~~~ltaS~Dg~VkvW~ 780 (793)
.... .......|...|.+++|+++. ...++ +|+.||.|++|+
T Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~----s~~~dG~I~iw~ 437 (437)
T 3gre_A 377 IPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLV----ACDNSGLIGIFQ 437 (437)
T ss_dssp EEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEE----EEETTSCEEEEC
T ss_pred EEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEE----EEcCCceEEEeC
Confidence 1110 001223488899999999963 44555 999999999995
No 22
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=9.8e-32 Score=287.59 Aligned_cols=279 Identities=16% Similarity=0.192 Sum_probs=234.0
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCe---EEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCC
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENEN---IVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMP 532 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~---~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~ 532 (793)
|++++|+| +++++++++ ||.|++||+.+++ ....+...+|...|.+++|+ ++++++++++.||.|++||+.+++
T Consensus 54 v~~~~~~~-~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~d~~i~~~d~~~~~ 130 (337)
T 1gxr_A 54 VCAVTISN-PTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLL-PDGCTLIVGGEASTLSIWDLAAPT 130 (337)
T ss_dssp CCEEEECS-SSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEEC-TTSSEEEEEESSSEEEEEECCCC-
T ss_pred eEEEEEec-CCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEc-CCCCEEEEEcCCCcEEEEECCCCC
Confidence 89999999 999999999 9999999998764 23344444788999999998 789999999999999999998865
Q ss_pred CcccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEE
Q 003822 533 PSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATS 612 (793)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTg 612 (793)
.... .....+...|.+++|+|++..+++++.||.|++||+++++.+..+. +|...|.+++|+|++ .+++++
T Consensus 131 ~~~~-------~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~-~~~~~i~~~~~~~~~-~~l~~~ 201 (337)
T 1gxr_A 131 PRIK-------AELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQ-GHTDGASCIDISNDG-TKLWTG 201 (337)
T ss_dssp -EEE-------EEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEECTTS-SEEEEE
T ss_pred ccee-------eecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeee-cccCceEEEEECCCC-CEEEEE
Confidence 3111 1123455779999999999999999999999999999999999998 699999999999998 899999
Q ss_pred eCCCeEEEEECCCCCccceEEccCCCCeEEEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEee
Q 003822 613 SFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYL 692 (793)
Q Consensus 613 s~Dg~IrIWDlrt~~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afsp 692 (793)
+.||.|++||+++++. .........+.+++|+|+|+++++++.++.|++||+.+++... + ..+...+..++|+|
T Consensus 202 ~~dg~i~~~d~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~-~---~~~~~~v~~~~~~~ 275 (337)
T 1gxr_A 202 GLDNTVRSWDLREGRQ--LQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ-L---HLHESCVLSLKFAY 275 (337)
T ss_dssp ETTSEEEEEETTTTEE--EEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEE-E---CCCSSCEEEEEECT
T ss_pred ecCCcEEEEECCCCce--EeeecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEE-E---cCCccceeEEEECC
Confidence 9999999999998743 3344444566679999999999999999999999999887642 3 24667899999999
Q ss_pred CCCeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCCCCccceeeeccCCccccCCccEEEEEEcCCCCceeeEeeEEEeC
Q 003822 693 NGRDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKSEIVKVNLLAST 772 (793)
Q Consensus 693 dg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~~~~iv~~~ltaS~ 772 (793)
+++ +|++++.||.+ ++||+.+++.+. ... |...|.+++|+|+ ...++ +++.
T Consensus 276 ~~~-~l~~~~~dg~i-~~~~~~~~~~~~--~~~--------------------~~~~v~~~~~s~~-~~~l~----~~~~ 326 (337)
T 1gxr_A 276 CGK-WFVSTGKDNLL-NAWRTPYGASIF--QSK--------------------ESSSVLSCDISVD-DKYIV----TGSG 326 (337)
T ss_dssp TSS-EEEEEETTSEE-EEEETTTCCEEE--EEE--------------------CSSCEEEEEECTT-SCEEE----EEET
T ss_pred CCC-EEEEecCCCcE-EEEECCCCeEEE--Eec--------------------CCCcEEEEEECCC-CCEEE----EecC
Confidence 999 99999999999 999999998875 221 2357999999996 44555 8999
Q ss_pred CCcEEEEcC
Q 003822 773 DHCDKECSH 781 (793)
Q Consensus 773 Dg~VkvW~~ 781 (793)
||.|++|+.
T Consensus 327 dg~i~iw~~ 335 (337)
T 1gxr_A 327 DKKATVYEV 335 (337)
T ss_dssp TSCEEEEEE
T ss_pred CCeEEEEEE
Confidence 999999985
No 23
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=2.6e-32 Score=321.77 Aligned_cols=280 Identities=14% Similarity=0.194 Sum_probs=229.0
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCe--EEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcC----CcEEEEEcC
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENEN--IVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDN----GSLKLYDIR 529 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~--~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~D----gtV~vWDl~ 529 (793)
|++++|+| ++++||+|+.||+|+|||+.+++ ....+. +|.+.|.+++|+ ++++.|++++.+ ++|++||..
T Consensus 62 v~~~~~sp-dg~~lasg~~d~~v~lWd~~~~~~~~~~~~~--~~~~~v~~v~fs-~dg~~l~~~~~~~~~~~~v~~wd~~ 137 (611)
T 1nr0_A 62 TTVAKTSP-SGYYCASGDVHGNVRIWDTTQTTHILKTTIP--VFSGPVKDISWD-SESKRIAAVGEGRERFGHVFLFDTG 137 (611)
T ss_dssp EEEEEECT-TSSEEEEEETTSEEEEEESSSTTCCEEEEEE--CSSSCEEEEEEC-TTSCEEEEEECCSSCSEEEEETTTC
T ss_pred eEEEEECC-CCcEEEEEeCCCCEEEeECCCCcceeeEeec--ccCCceEEEEEC-CCCCEEEEEECCCCceeEEEEeeCC
Confidence 99999999 99999999999999999997544 333444 899999999998 789999998865 467788743
Q ss_pred CCCCcccccccCCceeEecCCCCeEEEEEccCCC-EEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcE
Q 003822 530 HMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDE-LFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSI 608 (793)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~-~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~ 608 (793)
. . ...+ ..|...|.+++|+|++. .+++++.|++|++||..+++...++. +|...|++++|+|++ .+
T Consensus 138 ~--~-~~~l--------~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~-~H~~~V~~v~fspdg-~~ 204 (611)
T 1nr0_A 138 T--S-NGNL--------TGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFG-EHTKFVHSVRYNPDG-SL 204 (611)
T ss_dssp C--B-CBCC--------CCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEEC-CCSSCEEEEEECTTS-SE
T ss_pred C--C-ccee--------cCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeec-cccCceEEEEECCCC-CE
Confidence 3 2 1111 23557899999999887 58888899999999999999999998 799999999999999 89
Q ss_pred EEEEeCCCeEEEEECCCCCccceEEcc-------CCCCeE-EEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecC
Q 003822 609 FATSSFDQDVKLWDLRQKPIQPCYTAS-------SSKGNV-MVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITAT 680 (793)
Q Consensus 609 LaTgs~Dg~IrIWDlrt~~~~~~~~l~-------~~~~~v-sv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~ 680 (793)
|++|+.|++|++||+++++.. ..+. +|...+ +++|+|+|++|++++.|++|++||+.+++.+.++.....
T Consensus 205 las~s~D~~i~lwd~~~g~~~--~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~ 282 (611)
T 1nr0_A 205 FASTGGDGTIVLYNGVDGTKT--GVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTR 282 (611)
T ss_dssp EEEEETTSCEEEEETTTCCEE--EECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSS
T ss_pred EEEEECCCcEEEEECCCCcEe--eeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCC
Confidence 999999999999999887543 3331 465555 699999999999999999999999999999888864333
Q ss_pred CCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCCCCccceeeeccCCccccCCccEEEEEEcCCCC
Q 003822 681 GSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSK 760 (793)
Q Consensus 681 ~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~~ 760 (793)
.......+.| ++. .+++++.|+.+ ++||..+++... .+.||. ..|.+++|+|+ .
T Consensus 283 ~~~~~~~~~~--~~~-~l~s~s~d~~i-~~~~~~~~~~~~--~~~gh~-------------------~~v~~l~~spd-g 336 (611)
T 1nr0_A 283 IEDQQLGIIW--TKQ-ALVSISANGFI-NFVNPELGSIDQ--VRYGHN-------------------KAITALSSSAD-G 336 (611)
T ss_dssp GGGCEEEEEE--CSS-CEEEEETTCCE-EEEETTTTEEEE--EECCCS-------------------SCEEEEEECTT-S
T ss_pred ccceeEEEEE--cCC-EEEEEeCCCcE-EEEeCCCCCcce--EEcCCC-------------------CCEEEEEEeCC-C
Confidence 3334455555 565 89999999999 999999988776 555554 57999999995 4
Q ss_pred ceeeEeeEEEeCCCcEEEEcCCCC
Q 003822 761 SEIVKVNLLASTDHCDKECSHGQH 784 (793)
Q Consensus 761 ~~iv~~~ltaS~Dg~VkvW~~~~~ 784 (793)
..++ +|+.||+|++|+....
T Consensus 337 ~~l~----s~s~D~~v~~Wd~~~~ 356 (611)
T 1nr0_A 337 KTLF----SADAEGHINSWDISTG 356 (611)
T ss_dssp SEEE----EEETTSCEEEEETTTC
T ss_pred CEEE----EEeCCCcEEEEECCCC
Confidence 5566 8999999999998654
No 24
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=6.4e-32 Score=322.80 Aligned_cols=299 Identities=14% Similarity=0.164 Sum_probs=231.8
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCC-----eEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCC
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENE-----NIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRH 530 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~-----~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~ 530 (793)
|++++|+|.++++|++|+.||+|++|++.+. .....+. +|...|.+++|+ +++++|++|+.||+|++||+.+
T Consensus 385 V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~--~h~~~v~~v~~s-~~g~~l~sgs~Dg~v~vwd~~~ 461 (694)
T 3dm0_A 385 VTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLT--GHSHFVEDVVLS-SDGQFALSGSWDGELRLWDLAA 461 (694)
T ss_dssp EEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEE--CCSSCEEEEEEC-TTSSEEEEEETTSEEEEEETTT
T ss_pred eEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceec--CCCCcEEEEEEC-CCCCEEEEEeCCCcEEEEECCC
Confidence 9999999966789999999999999998753 3344444 899999999998 7899999999999999999988
Q ss_pred CCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEc--ccCCCCeEEEEEcCCCC-c
Q 003822 531 MPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFA--DMHKEHINVVKFSNHSP-S 607 (793)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~--~gh~~~V~sv~fspdg~-~ 607 (793)
+... .....|...|.+++|+|++..+++++.|++|++||+.......... .+|...|.+++|+|++. .
T Consensus 462 ~~~~---------~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 532 (694)
T 3dm0_A 462 GVST---------RRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQP 532 (694)
T ss_dssp TEEE---------EEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSC
T ss_pred Ccce---------eEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcc
Confidence 6431 1123566889999999999999999999999999987554433322 26899999999999862 5
Q ss_pred EEEEEeCCCeEEEEECCCCCccceEEccCCCCeE-EEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcE
Q 003822 608 IFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNY 686 (793)
Q Consensus 608 ~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~~~~v-sv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~ 686 (793)
.+++|+.|++|++||+++.+ ....+.+|...+ +++|+|+|++|++|+.||.|++||+.+++.+..+. ++..+.
T Consensus 533 ~l~s~s~d~~v~vwd~~~~~--~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~----~~~~v~ 606 (694)
T 3dm0_A 533 TIVSASWDKTVKVWNLSNCK--LRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLE----ANSVIH 606 (694)
T ss_dssp EEEEEETTSCEEEEETTTCC--EEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCB----CSSCEE
T ss_pred eEEEEeCCCeEEEEECCCCc--EEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEec----CCCcEE
Confidence 89999999999999999874 445666777666 59999999999999999999999999998876653 456788
Q ss_pred EEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCCCCccceeeeccCCccccCCccEEEEEEcCCCCceeeEe
Q 003822 687 TRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKSEIVKV 766 (793)
Q Consensus 687 s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~~~~iv~~ 766 (793)
.++|+|++. ++++++ |+.| +|||+.+++.+. .+..+..................+...|.+++|+|+ ...++
T Consensus 607 ~~~~sp~~~-~l~~~~-~~~i-~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spd-g~~l~-- 678 (694)
T 3dm0_A 607 ALCFSPNRY-WLCAAT-EHGI-KIWDLESKSIVE--DLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSAD-GSTLF-- 678 (694)
T ss_dssp EEEECSSSS-EEEEEE-TTEE-EEEETTTTEEEE--EECCCCC----------------CCCCEEEEEECTT-SSEEE--
T ss_pred EEEEcCCCc-EEEEEc-CCCE-EEEECCCCCChh--hhccccccccccccccccccCCceeEEeeeEEEcCC-CCEEE--
Confidence 999999987 666554 5668 999999999998 665543211110000000011122335889999996 45566
Q ss_pred eEEEeCCCcEEEEcCC
Q 003822 767 NLLASTDHCDKECSHG 782 (793)
Q Consensus 767 ~ltaS~Dg~VkvW~~~ 782 (793)
+||.||+|++|+..
T Consensus 679 --sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 679 --SGYTDGVIRVWGIG 692 (694)
T ss_dssp --EEETTSEEEEEEC-
T ss_pred --EEcCCCeEEEEecc
Confidence 89999999999975
No 25
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=5.9e-32 Score=297.79 Aligned_cols=301 Identities=13% Similarity=0.066 Sum_probs=238.9
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCe------EEEEEeccCCCCCEEEEEEeeCC----C---CEEEEEEcCCc
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENEN------IVSYIPSFGAMNSVLGLCWLKKY----P---SKLIAGSDNGS 522 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~------~i~~l~~~~h~~~V~sv~fs~~~----g---~~Lasgs~Dgt 522 (793)
|++++|+| ++|++|+.||+|++||+.+++ ....+. +|...|.+++|+ ++ + ++|++++.||.
T Consensus 19 i~~~~~~~---~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~--~h~~~v~~~~~~-~~~~~~g~~~~~l~s~~~dg~ 92 (397)
T 1sq9_A 19 IFSVSACN---SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHF--VHKSGLHHVDVL-QAIERDAFELCLVATTSFSGD 92 (397)
T ss_dssp EEEEEECS---SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEE--CCTTCEEEEEEE-EEEETTTEEEEEEEEEETTSC
T ss_pred eEEEEecC---CeEEEEcCCCEEEEEECCCcccccCCCcceEEe--cCCCcEEEEEEe-cccccCCccccEEEEEcCCCC
Confidence 99999999 799999999999999999887 566665 899999999998 56 8 89999999999
Q ss_pred EEEEEcCCCCCcccccccCCceeEe-cC-----CCCeEEEEEc----cCCCE-EEEEECCCcEEEEECCC------CcEE
Q 003822 523 LKLYDIRHMPPSIRGMHYGAGTVTF-DE-----FDQLTSVHVN----SMDEL-FLASGYSKNIALYDINS------GRRL 585 (793)
Q Consensus 523 V~vWDl~~~~~~~~~~~~~~~~~~~-~~-----~~~V~sv~~s----~~~~~-lla~g~Dg~I~IWDl~t------g~~l 585 (793)
|++||+.+++...... ...+ .+ ...|.+++|+ |++.. +++++.||.|++||+.+ ++.+
T Consensus 93 i~iw~~~~~~~~~~~~-----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 167 (397)
T 1sq9_A 93 LLFYRITREDETKKVI-----FEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTL 167 (397)
T ss_dssp EEEEEEEECTTTCCEE-----EEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTT
T ss_pred EEEEEccCCccccccc-----ceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccccccccee
Confidence 9999998865411000 1111 22 3789999999 88999 99999999999999998 6665
Q ss_pred E-----EEc------ccCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEECCCCCccceEEccC---C---C-CeEEEEEec
Q 003822 586 Q-----VFA------DMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASS---S---K-GNVMVCFSP 647 (793)
Q Consensus 586 ~-----~~~------~gh~~~V~sv~fspdg~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~---~---~-~~vsv~fSp 647 (793)
. .+. ..|...|++++|+|++ ++++|+.||.|++||+++++ .+..+.. | . .+.+++|+|
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~h~~~~~~i~~i~~~~ 243 (397)
T 1sq9_A 168 NWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTLR--PLYNFESQHSMINNSNSIRSVKFSP 243 (397)
T ss_dssp CCCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTTTE--EEEEEECCC---CCCCCEEEEEECS
T ss_pred eccCcceeeeeeccccCCCCCceEEEECCCc--eEEEEeCCCcEEEEECCCCc--eeEEEeccccccccCCccceEEECC
Confidence 5 663 2488999999999988 89999999999999999874 4455555 4 4 445699999
Q ss_pred CCCEEEEEeCC---CeEEEEEcCCCcEEEEEeeec----------CCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcC
Q 003822 648 DDHYLLVSAVD---NEVRQLLAVDGRVHLNFGITA----------TGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQ 714 (793)
Q Consensus 648 dg~~Lasgs~D---g~I~IwDl~tg~~~~~l~~~~----------~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~ 714 (793)
++++|++++.| +.|++||+.+++.+..+.... .+...+..++|+|++. +|++|+.||.| ++||+.
T Consensus 244 ~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i-~iwd~~ 321 (397)
T 1sq9_A 244 QGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGE-TLCSAGWDGKL-RFWDVK 321 (397)
T ss_dssp STTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSS-EEEEEETTSEE-EEEETT
T ss_pred CCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCC-EEEEEeCCCeE-EEEEcC
Confidence 99999999999 999999999999888775310 0567789999999998 99999999999 999999
Q ss_pred CCcEEEeeeec------CCCCCccceeeeccCCccccCCccEEEEEEcCCCC---------ceeeEeeEEEeCCCcEEEE
Q 003822 715 TGRRLRDISLE------GKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSK---------SEIVKVNLLASTDHCDKEC 779 (793)
Q Consensus 715 tg~~l~~~~L~------gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~~---------~~iv~~~ltaS~Dg~VkvW 779 (793)
+++.+. .+. +|... ...-..+....|...|.+++|+|++. ..++ +|+.||.|++|
T Consensus 322 ~~~~~~--~~~~~~~~~~~~~~----~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~----s~~~dg~i~iw 391 (397)
T 1sq9_A 322 TKERIT--TLNMHCDDIEIEED----ILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLC----CVCLDRSIRWF 391 (397)
T ss_dssp TTEEEE--EEECCGGGCSSGGG----CCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEE----EEETTTEEEEE
T ss_pred CCceeE--EEecccCcccchhh----hhccccccccccCCceeEEEeccccccccccccccceEE----EecCCCcEEEE
Confidence 999999 666 54210 00011133445678999999999753 4566 89999999999
Q ss_pred cCCC
Q 003822 780 SHGQ 783 (793)
Q Consensus 780 ~~~~ 783 (793)
+...
T Consensus 392 ~~~~ 395 (397)
T 1sq9_A 392 REAG 395 (397)
T ss_dssp EEEC
T ss_pred EcCC
Confidence 9754
No 26
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=8.4e-32 Score=291.83 Aligned_cols=237 Identities=20% Similarity=0.221 Sum_probs=211.9
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcc
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSI 535 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~ 535 (793)
|++++|+| ++.++++|+.||+|++||+.+++.+..+. .|...+.+++|+ +++++|++|+.||.|++||+++++...
T Consensus 83 v~~~~~~~-~~~~l~s~s~D~~i~lWd~~~~~~~~~~~--~~~~~~~~~~~s-pdg~~l~~g~~dg~v~i~~~~~~~~~~ 158 (321)
T 3ow8_A 83 VVSVDISH-TLPIAASSSLDAHIRLWDLENGKQIKSID--AGPVDAWTLAFS-PDSQYLATGTHVGKVNIFGVESGKKEY 158 (321)
T ss_dssp EEEEEECS-SSSEEEEEETTSEEEEEETTTTEEEEEEE--CCTTCCCCEEEC-TTSSEEEEECTTSEEEEEETTTCSEEE
T ss_pred EEEEEECC-CCCEEEEEeCCCcEEEEECCCCCEEEEEe--CCCccEEEEEEC-CCCCEEEEEcCCCcEEEEEcCCCceeE
Confidence 89999999 88999999999999999999999988876 778889999998 799999999999999999998865421
Q ss_pred cccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeCC
Q 003822 536 RGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFD 615 (793)
Q Consensus 536 ~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~D 615 (793)
....+...|.+++|+|++..+++++.||.|++||+++++.+..+. +|..+|++++|+|++ .+|++|+.|
T Consensus 159 ---------~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~l~~spd~-~~l~s~s~d 227 (321)
T 3ow8_A 159 ---------SLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLE-GHAMPIRSLTFSPDS-QLLVTASDD 227 (321)
T ss_dssp ---------EEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC-CCSSCCCEEEECTTS-CEEEEECTT
T ss_pred ---------EecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEc-ccCCceeEEEEcCCC-CEEEEEcCC
Confidence 112344679999999999999999999999999999999999998 699999999999999 899999999
Q ss_pred CeEEEEECCCCCccceEEccCCCCeE-EEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCC
Q 003822 616 QDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNG 694 (793)
Q Consensus 616 g~IrIWDlrt~~~~~~~~l~~~~~~v-sv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg 694 (793)
++|++||++++. ....+.+|...+ +++|+|+|++|++++.|+.|++||+.+++++.++. .+...+..++|+|++
T Consensus 228 g~i~iwd~~~~~--~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~---~h~~~v~~v~~s~~g 302 (321)
T 3ow8_A 228 GYIKIYDVQHAN--LAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFF---DHQDQVWGVKYNGNG 302 (321)
T ss_dssp SCEEEEETTTCC--EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC---CCSSCEEEEEECTTS
T ss_pred CeEEEEECCCcc--eeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEc---CCCCcEEEEEECCCC
Confidence 999999999874 445666777655 59999999999999999999999999999988875 466789999999999
Q ss_pred CeEEEEEeCCCcEEEEEEcC
Q 003822 695 RDYIVSGSCDEHVVRICCAQ 714 (793)
Q Consensus 695 ~~~L~Sgs~Dg~II~IWDv~ 714 (793)
. +|++++.||.| ++||..
T Consensus 303 ~-~l~s~~~d~~i-~vwd~p 320 (321)
T 3ow8_A 303 S-KIVSVGDDQEI-HIYDCP 320 (321)
T ss_dssp S-EEEEEETTCCE-EEEECC
T ss_pred C-EEEEEeCCCeE-EEEeCC
Confidence 8 99999999999 999963
No 27
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=2.9e-32 Score=299.10 Aligned_cols=244 Identities=12% Similarity=0.114 Sum_probs=200.6
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEE--EeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCC
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSY--IPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPP 533 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~--l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~ 533 (793)
|++++|+| + ..|++|+.||+|+|||+++++.... ....+|.+.|++++|+ +++++|++|+.||+|++||+++++.
T Consensus 85 v~~~~~s~-d-~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~s-pdg~~l~sgs~d~~i~iwd~~~~~~ 161 (344)
T 4gqb_B 85 VADLTWVG-E-RGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVL-SSGTQAVSGSKDICIKVWDLAQQVV 161 (344)
T ss_dssp EEEEEEET-T-TEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEEC-TTSSEEEEEETTSCEEEEETTTTEE
T ss_pred EEEEEEeC-C-CeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEEC-CCCCEEEEEeCCCeEEEEECCCCcE
Confidence 89999999 6 4788999999999999998875433 3344899999999998 7999999999999999999998654
Q ss_pred cccccccCCceeEecCCCCeEEEEEccCCC-EEEEEECCCcEEEEECCCCcEEEEEcc-cCCCCeEEEEEcCCCCcEEEE
Q 003822 534 SIRGMHYGAGTVTFDEFDQLTSVHVNSMDE-LFLASGYSKNIALYDINSGRRLQVFAD-MHKEHINVVKFSNHSPSIFAT 611 (793)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~-~lla~g~Dg~I~IWDl~tg~~l~~~~~-gh~~~V~sv~fspdg~~~LaT 611 (793)
. . ....|...|.+++|++++. .+++++.|++|++||++++++...+.. .|...+++++|+|+++.+|++
T Consensus 162 ~-~--------~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s 232 (344)
T 4gqb_B 162 L-S--------SYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVF 232 (344)
T ss_dssp E-E--------EECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEE
T ss_pred E-E--------EEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEE
Confidence 1 1 1124568899999999875 567788999999999999998888752 356689999999987789999
Q ss_pred EeCCCeEEEEECCCCCccceEEccCCCCeE-EEEEecCC-CEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEE
Q 003822 612 SSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDD-HYLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNYTRS 689 (793)
Q Consensus 612 gs~Dg~IrIWDlrt~~~~~~~~l~~~~~~v-sv~fSpdg-~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~a 689 (793)
|+.||+|++||+++++ ++..+.+|...+ +++|+|+| ++|++|+.|++|++||+.++++.. + ..|...|..++
T Consensus 233 g~~dg~v~~wd~~~~~--~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~---~~H~~~V~~v~ 306 (344)
T 4gqb_B 233 GDENGTVSLVDTKSTS--CVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-S---QAHRDFVRDAT 306 (344)
T ss_dssp EETTSEEEEEESCC----CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-E---CCCSSCEEEEE
T ss_pred eccCCcEEEEECCCCc--EEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-E---cCCCCCEEEEE
Confidence 9999999999999884 455666777665 59999998 579999999999999999998653 3 25677899999
Q ss_pred EeeCCCeEEEEEeCCCcEEEEEEcCCCcE
Q 003822 690 YYLNGRDYIVSGSCDEHVVRICCAQTGRR 718 (793)
Q Consensus 690 fspdg~~~L~Sgs~Dg~II~IWDv~tg~~ 718 (793)
|+|+++.+|++||.|++| ++|++.+...
T Consensus 307 ~sp~~~~llas~s~D~~v-~~w~v~~~~~ 334 (344)
T 4gqb_B 307 WSPLNHSLLTTVGWDHQV-VHHVVPTEPL 334 (344)
T ss_dssp ECSSSTTEEEEEETTSCE-EEEECCC---
T ss_pred EeCCCCeEEEEEcCCCeE-EEEECCCCCC
Confidence 999998688899999999 9999987644
No 28
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=2.2e-31 Score=308.72 Aligned_cols=271 Identities=21% Similarity=0.291 Sum_probs=229.9
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcc
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSI 535 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~ 535 (793)
|++++|+| ++..+++++.||+|++||..... +..+. +|...|.+++|+ ++++++++|+.||.|++||... +. .
T Consensus 306 v~~~~~~~-~~~~l~t~~~d~~i~~w~~~~~~-~~~~~--~~~~~v~~~~~s-~~g~~l~~~~~dg~v~~~~~~~-~~-~ 378 (577)
T 2ymu_A 306 VWGVAFSP-DGQTIASASDDKTVKLWNRNGQH-LQTLT--GHSSSVWGVAFS-PDGQTIASASDDKTVKLWNRNG-QL-L 378 (577)
T ss_dssp EEEEEECT-TSSEEEEEETTSCEEEEETTSCE-EEEEC--CCSSCEEEEEEC-TTSSEEEEEETTSEEEEEETTC-CE-E
T ss_pred eEEEEECC-CCCEEEEEeCCCeEEEEeCCCCe-eEEEe--CCCCCEEEEEEC-CCCCEEEEEeCCCEEEEEcCCC-CE-E
Confidence 89999999 99999999999999999987554 44444 889999999997 7999999999999999999643 21 1
Q ss_pred cccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeCC
Q 003822 536 RGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFD 615 (793)
Q Consensus 536 ~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~D 615 (793)
.....|...|.+++|+|++..+++++.|+.|++||. +++.+..+. +|...|++++|+|++ .+|++++.|
T Consensus 379 --------~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~-~~~~~v~~~~~s~d~-~~l~~~~~d 447 (577)
T 2ymu_A 379 --------QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT-GHSSSVWGVAFSPDD-QTIASASDD 447 (577)
T ss_dssp --------EEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEE-CCSSCEEEEEECTTS-SEEEEEETT
T ss_pred --------EEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEec-CCCCCeEEEEECCCC-CEEEEEcCC
Confidence 112345678999999999999999999999999995 578888888 699999999999999 899999999
Q ss_pred CeEEEEECCCCCccceEEccCCCCeE-EEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCC
Q 003822 616 QDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNG 694 (793)
Q Consensus 616 g~IrIWDlrt~~~~~~~~l~~~~~~v-sv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg 694 (793)
++|++||.... ....+.+|...+ +++|+|+|++|++++.|+.|++||. +++.+..+. .+...+..++|+|+|
T Consensus 448 ~~v~~w~~~~~---~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~---~h~~~v~~l~~s~dg 520 (577)
T 2ymu_A 448 KTVKLWNRNGQ---LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT---GHSSSVRGVAFSPDG 520 (577)
T ss_dssp SEEEEEETTSC---EEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEE---CCSSCEEEEEECTTS
T ss_pred CEEEEEECCCC---EEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEe---CCCCCEEEEEEcCCC
Confidence 99999997542 344555666555 5999999999999999999999994 678877775 466789999999999
Q ss_pred CeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCCCCccceeeeccCCccccCCccEEEEEEcCCCCceeeEeeEEEeCCC
Q 003822 695 RDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKSEIVKVNLLASTDH 774 (793)
Q Consensus 695 ~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~~~~iv~~~ltaS~Dg 774 (793)
+ +|++|+.||.| ++||. +++.+. ++.||. ..|.+++|+|++ ..++ +||.||
T Consensus 521 ~-~l~s~~~dg~v-~lwd~-~~~~~~--~~~~h~-------------------~~v~~~~fs~dg-~~l~----s~~~D~ 571 (577)
T 2ymu_A 521 Q-TIASASDDKTV-KLWNR-NGQLLQ--TLTGHS-------------------SSVWGVAFSPDG-QTIA----SASSDK 571 (577)
T ss_dssp S-CEEEEETTSEE-EEECT-TSCEEE--EEECCS-------------------SCEEEEEECTTS-SCEE----EEETTS
T ss_pred C-EEEEEECcCEE-EEEeC-CCCEEE--EEcCCC-------------------CCEEEEEEcCCC-CEEE----EEeCCC
Confidence 9 99999999999 99995 788887 666665 579999999964 4555 899999
Q ss_pred cEEEEc
Q 003822 775 CDKECS 780 (793)
Q Consensus 775 ~VkvW~ 780 (793)
+|++|+
T Consensus 572 ~i~~Wd 577 (577)
T 2ymu_A 572 TVKLWN 577 (577)
T ss_dssp CEEEEC
T ss_pred EEEEeC
Confidence 999996
No 29
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=3e-32 Score=294.42 Aligned_cols=308 Identities=11% Similarity=0.113 Sum_probs=230.2
Q ss_pred eEEEEEeCCCC-CEEEEEeC---CCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCC--CCEEEEEEcCCcEEEEEcC
Q 003822 456 PRQFEYHPSIS-CLMVFGTL---DGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKY--PSKLIAGSDNGSLKLYDIR 529 (793)
Q Consensus 456 V~~vafsP~d~-~~Lasgs~---DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~--g~~Lasgs~DgtV~vWDl~ 529 (793)
|++++|+| ++ .++++|+. ||.|++||+.+++....... +|...|.+++|+|.. +++|++|+.||.|++||+.
T Consensus 21 v~~~~~~p-~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 98 (357)
T 3i2n_A 21 VFDCKWVP-CSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREI-EKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLE 98 (357)
T ss_dssp EEEEEECT-TSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEE-EESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTT
T ss_pred eEEEEEcC-CCceEEEecCccCCCcEEEEEeCCCCcccceeee-cccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCC
Confidence 99999999 55 56667776 99999999999887655433 788999999998432 7999999999999999999
Q ss_pred CCCCcccccccCCceeEecCCCCeEEEEE------ccCCCEEEEEECCCcEEEEECCCCc-EEEEEcccCCC----CeEE
Q 003822 530 HMPPSIRGMHYGAGTVTFDEFDQLTSVHV------NSMDELFLASGYSKNIALYDINSGR-RLQVFADMHKE----HINV 598 (793)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~V~sv~~------s~~~~~lla~g~Dg~I~IWDl~tg~-~l~~~~~gh~~----~V~s 598 (793)
+++..... ...|...|.+++| ++++..+++++.||.|++||+++++ .+..+. .|.+ .+.+
T Consensus 99 ~~~~~~~~--------~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~-~~~~~~~~~v~~ 169 (357)
T 3i2n_A 99 APEMPVYS--------VKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANME-PVQGENKRDCWT 169 (357)
T ss_dssp SCSSCSEE--------ECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEEC-CCTTSCCCCEEE
T ss_pred CCCccEEE--------EEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceecc-ccCCCCCCceEE
Confidence 87622221 2245577899955 5678899999999999999999987 777776 3444 8999
Q ss_pred EE----EcCCCCcEEEEEeCCCeEEEEECCCCCccceEEccCCCCeEEEEEec---CCCEEEEEeCCCeEEEEEcCCCcE
Q 003822 599 VK----FSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSP---DDHYLLVSAVDNEVRQLLAVDGRV 671 (793)
Q Consensus 599 v~----fspdg~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~~~~vsv~fSp---dg~~Lasgs~Dg~I~IwDl~tg~~ 671 (793)
++ |+|++ .++++++.||.|++||++++.. .........+.+++|+| ++.++++++.||.|++||+.+++.
T Consensus 170 ~~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 246 (357)
T 3i2n_A 170 VAFGNAYNQEE-RVVCAGYDNGDIKLFDLRNMAL--RWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHP 246 (357)
T ss_dssp EEEECCCC-CC-CEEEEEETTSEEEEEETTTTEE--EEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEET
T ss_pred EEEEeccCCCC-CEEEEEccCCeEEEEECccCce--eeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCc
Confidence 98 67888 8999999999999999998743 33333344556799999 999999999999999999987765
Q ss_pred EEEEe--eecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCCCCccceeeeccCCccccCCcc
Q 003822 672 HLNFG--ITATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMS 749 (793)
Q Consensus 672 ~~~l~--~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~ 749 (793)
...+. ....+...+..++|+|++..++++|+.||.| ++||+.++.........|.......-...+ ..+.+|...
T Consensus 247 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i-~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~ 323 (357)
T 3i2n_A 247 TKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGL-HLWKYEYPIQRSKKDSEGIEMGVAGSVSLL--QNVTLSTQP 323 (357)
T ss_dssp TTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEE-EEEEEECCSCC--CCTTSCCCCCCCEEEEE--EEEECCSSC
T ss_pred ccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcE-EEeecCCCcccccccCCCCcccccccccee--eccccCCCC
Confidence 43332 1225677899999999998789999999999 999998876554111111110000000001 123467789
Q ss_pred EEEEEEcCCCCceeeEeeEEEeCCCcEEEEcCCCC
Q 003822 750 ILAAYTRPSSKSEIVKVNLLASTDHCDKECSHGQH 784 (793)
Q Consensus 750 V~sva~~P~~~~~iv~~~ltaS~Dg~VkvW~~~~~ 784 (793)
|.+++|+|++...++ +++.||.|++|+....
T Consensus 324 v~~~~~s~~~~~l~~----s~~~d~~i~iw~~~~~ 354 (357)
T 3i2n_A 324 ISSLDWSPDKRGLCV----CSSFDQTVRVLIVTKL 354 (357)
T ss_dssp EEEEEECSSSTTEEE----EEETTSEEEEEEECC-
T ss_pred eeEEEEcCCCCeEEE----EecCCCcEEEEECCCc
Confidence 999999998765555 7999999999998643
No 30
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1.8e-31 Score=286.28 Aligned_cols=252 Identities=17% Similarity=0.189 Sum_probs=210.8
Q ss_pred EEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEE
Q 003822 489 VSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLAS 568 (793)
Q Consensus 489 i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~ 568 (793)
..++. +|.+.|.+++|+ |++.+|++|+.||+|++||++++... . ....+..+|.+++|++++..++++
T Consensus 6 ~~~~~--~h~~~V~~~~fs-p~~~~l~s~~~dg~v~lWd~~~~~~~-~--------~~~~~~~~v~~~~~~~~~~~l~s~ 73 (304)
T 2ynn_A 6 KKTFS--NRSDRVKGIDFH-PTEPWVLTTLYSGRVELWNYETQVEV-R--------SIQVTETPVRAGKFIARKNWIIVG 73 (304)
T ss_dssp EEEEE--EECSCEEEEEEC-SSSSEEEEEETTSEEEEEETTTTEEE-E--------EEECCSSCEEEEEEEGGGTEEEEE
T ss_pred EEeec--CCCCceEEEEEC-CCCCEEEEEcCCCcEEEEECCCCcee-E--------EeeccCCcEEEEEEeCCCCEEEEE
Confidence 34455 899999999998 78999999999999999999886431 1 112355789999999999999999
Q ss_pred ECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEECCCCCccceEEccCCCCeE-EEEEec
Q 003822 569 GYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSP 647 (793)
Q Consensus 569 g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~~~~v-sv~fSp 647 (793)
+.|++|++||+.+++.+..+. +|.+.|++++|+|++ .+|++|+.||+|++||++++. .....+.+|...+ +++|+|
T Consensus 74 s~d~~i~vwd~~~~~~~~~~~-~h~~~v~~~~~~~~~-~~l~sgs~D~~v~lWd~~~~~-~~~~~~~~h~~~v~~v~~~p 150 (304)
T 2ynn_A 74 SDDFRIRVFNYNTGEKVVDFE-AHPDYIRSIAVHPTK-PYVLSGSDDLTVKLWNWENNW-ALEQTFEGHEHFVMCVAFNP 150 (304)
T ss_dssp ETTSEEEEEETTTCCEEEEEE-CCSSCEEEEEECSSS-SEEEEEETTSCEEEEEGGGTT-EEEEEECCCCSCEEEEEECT
T ss_pred CCCCEEEEEECCCCcEEEEEe-CCCCcEEEEEEcCCC-CEEEEECCCCeEEEEECCCCc-chhhhhcccCCcEEEEEECC
Confidence 999999999999999999998 699999999999999 899999999999999998763 2334556676655 699999
Q ss_pred -CCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEee--CCCeEEEEEeCCCcEEEEEEcCCCcEEEeeee
Q 003822 648 -DDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYL--NGRDYIVSGSCDEHVVRICCAQTGRRLRDISL 724 (793)
Q Consensus 648 -dg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afsp--dg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L 724 (793)
++..|++|+.|+.|++||+.++.....+. ..+...+..+.|+| ++. +|++|+.|++| ++||+.+++++. ++
T Consensus 151 ~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~-~l~s~s~D~~i-~iWd~~~~~~~~--~~ 224 (304)
T 2ynn_A 151 KDPSTFASGCLDRTVKVWSLGQSTPNFTLT--TGQERGVNYVDYYPLPDKP-YMITASDDLTI-KIWDYQTKSCVA--TL 224 (304)
T ss_dssp TCTTEEEEEETTSEEEEEETTCSSCSEEEE--CCCTTCEEEEEECCSTTCC-EEEEEETTSEE-EEEETTTTEEEE--EE
T ss_pred CCCCEEEEEeCCCeEEEEECCCCCccceec--cCCcCcEEEEEEEEcCCCC-EEEEEcCCCeE-EEEeCCCCccce--ee
Confidence 68999999999999999998887655553 23445677888877 555 99999999999 999999999998 77
Q ss_pred cCCCCCccceeeeccCCccccCCccEEEEEEcCCCCceeeEeeEEEeCCCcEEEEcCCCCC
Q 003822 725 EGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKSEIVKVNLLASTDHCDKECSHGQHS 785 (793)
Q Consensus 725 ~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~~~~iv~~~ltaS~Dg~VkvW~~~~~~ 785 (793)
.+|. ..|.+++|+|+ ...++ +|+.||+|++|+.....
T Consensus 225 ~~h~-------------------~~v~~~~~~p~-~~~l~----s~s~Dg~i~iWd~~~~~ 261 (304)
T 2ynn_A 225 EGHM-------------------SNVSFAVFHPT-LPIII----SGSEDGTLKIWNSSTYK 261 (304)
T ss_dssp ECCS-------------------SCEEEEEECSS-SSEEE----EEETTSCEEEEETTTCC
T ss_pred CCCC-------------------CCEEEEEECCC-CCEEE----EEcCCCeEEEEECCCCc
Confidence 7765 47999999996 44566 89999999999986543
No 31
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-30 Score=276.10 Aligned_cols=277 Identities=15% Similarity=0.184 Sum_probs=230.7
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcc
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSI 535 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~ 535 (793)
|++++| | ++.+|++|+.||.|++||+.+++....+. .|...|.+++|+ ++++++++|+.||.|++|++.......
T Consensus 21 v~~~~~-~-~~~~l~s~~~dg~v~vw~~~~~~~~~~~~--~~~~~v~~~~~~-~~~~~l~~~~~dg~i~~~~~~~~~~~~ 95 (313)
T 3odt_A 21 VRDVVA-V-DDSKVASVSRDGTVRLWSKDDQWLGTVVY--TGQGFLNSVCYD-SEKELLLFGGKDTMINGVPLFATSGED 95 (313)
T ss_dssp EEEEEE-E-ETTEEEEEETTSEEEEEEESSSEEEEEEE--ECSSCEEEEEEE-TTTTEEEEEETTSCEEEEETTCCTTSC
T ss_pred cEEEEe-c-CCCEEEEEEcCCcEEEEECCCCEEEEEee--cCCccEEEEEEC-CCCCEEEEecCCCeEEEEEeeecCCCC
Confidence 999999 8 88999999999999999999988887776 788999999998 789999999999999999998754211
Q ss_pred cccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcC-CCCcEEEEEeC
Q 003822 536 RGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSN-HSPSIFATSSF 614 (793)
Q Consensus 536 ~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fsp-dg~~~LaTgs~ 614 (793)
. ......|...|.+++| +++.+++++.||.|++|| .++.+..+. .|...+.++.|.| ++ .++++++.
T Consensus 96 ~------~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~-~~~~~v~~~~~~~~~~-~~l~~~~~ 163 (313)
T 3odt_A 96 P------LYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQ-AHNASVWDAKVVSFSE-NKFLTASA 163 (313)
T ss_dssp C-------CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEE-CCSSCEEEEEEEETTT-TEEEEEET
T ss_pred c------ccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecc-cCCCceeEEEEccCCC-CEEEEEEC
Confidence 0 0112345678999999 577999999999999999 778888888 6999999999999 55 89999999
Q ss_pred CCeEEEEECCCCCccceEEccCCCCeEEEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCC
Q 003822 615 DQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNG 694 (793)
Q Consensus 615 Dg~IrIWDlrt~~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg 694 (793)
||.|++||.... ...+.......+.+++|+|++. +++++.||.|++||+.+++.+..+. .+...+..++|+|++
T Consensus 164 d~~i~i~d~~~~--~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~---~~~~~i~~~~~~~~~ 237 (313)
T 3odt_A 164 DKTIKLWQNDKV--IKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYE---GHESFVYCIKLLPNG 237 (313)
T ss_dssp TSCEEEEETTEE--EEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEE---CCSSCEEEEEECTTS
T ss_pred CCCEEEEecCce--EEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhh---cCCceEEEEEEecCC
Confidence 999999994332 2222222333445699999999 9999999999999999999988875 466789999999999
Q ss_pred CeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCCCCccceeeeccCCccccCCccEEEEEEcCCCCceeeEeeEEEeCCC
Q 003822 695 RDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKSEIVKVNLLASTDH 774 (793)
Q Consensus 695 ~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~~~~iv~~~ltaS~Dg 774 (793)
. +++|+.||.| ++||+.+++.+. .+.+|. ..|.+++|+|++. ++ +++.||
T Consensus 238 ~--l~~~~~dg~v-~iwd~~~~~~~~--~~~~~~-------------------~~i~~~~~~~~~~--~~----~~~~dg 287 (313)
T 3odt_A 238 D--IVSCGEDRTV-RIWSKENGSLKQ--VITLPA-------------------ISIWSVDCMSNGD--II----VGSSDN 287 (313)
T ss_dssp C--EEEEETTSEE-EEECTTTCCEEE--EEECSS-------------------SCEEEEEECTTSC--EE----EEETTS
T ss_pred C--EEEEecCCEE-EEEECCCCceeE--EEeccC-------------------ceEEEEEEccCCC--EE----EEeCCC
Confidence 4 8899999999 999999999988 665554 4699999999754 55 799999
Q ss_pred cEEEEcCCCCC
Q 003822 775 CDKECSHGQHS 785 (793)
Q Consensus 775 ~VkvW~~~~~~ 785 (793)
.|++|+.....
T Consensus 288 ~i~iw~~~~~~ 298 (313)
T 3odt_A 288 LVRIFSQEKSR 298 (313)
T ss_dssp CEEEEESCGGG
T ss_pred cEEEEeCCCCc
Confidence 99999987654
No 32
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=2.9e-31 Score=292.99 Aligned_cols=298 Identities=10% Similarity=0.067 Sum_probs=225.3
Q ss_pred cceEEEEEeCCCCCEEEEEeCCC-------eEEEEECCCCe--------EEEEEeccCCCCCEEEEEEeeCCCCEEEEEE
Q 003822 454 FRPRQFEYHPSISCLMVFGTLDG-------EIVVVNHENEN--------IVSYIPSFGAMNSVLGLCWLKKYPSKLIAGS 518 (793)
Q Consensus 454 ~~V~~vafsP~d~~~Lasgs~DG-------~I~VWd~~t~~--------~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs 518 (793)
+.|++++|+| ++++||+|+.+. .|++|++..+. ....+.+.+|...|.++++. ++.+++|.
T Consensus 15 ~PV~sv~fs~-dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~---~~~~~~g~ 90 (365)
T 4h5i_A 15 YPAYGAKFLN-NDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS---KGIILVGC 90 (365)
T ss_dssp SCEEEEEEEE-TTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE---TTEEEEEC
T ss_pred CCEEEEEEeC-CCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC---CCEEEEEE
Confidence 3499999999 999999998643 59999987542 23344556888899999864 55666653
Q ss_pred -----------cCCcEEEEEcCCCCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEE--CCCcEEEEECCCCcEE
Q 003822 519 -----------DNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASG--YSKNIALYDINSGRRL 585 (793)
Q Consensus 519 -----------~DgtV~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g--~Dg~I~IWDl~tg~~l 585 (793)
.|+++++|++.+..................+...+.+++|+|++.++++++ .|++|+|||+.+++.+
T Consensus 91 ~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~ 170 (365)
T 4h5i_A 91 NENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEK 170 (365)
T ss_dssp CCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEE
T ss_pred CCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEE
Confidence 577899999887654322221111111112335588999999999887655 5899999999999999
Q ss_pred EEEcccCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEECCCCCccceEEccCCCCeE-EEEEecCCCEEEEEeCCC----e
Q 003822 586 QVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLVSAVDN----E 660 (793)
Q Consensus 586 ~~~~~gh~~~V~sv~fspdg~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~~~~v-sv~fSpdg~~Lasgs~Dg----~ 660 (793)
..+. |.+.|++++|+|+| +++++++.+ .+++|+..++.........+|...+ +++|+|+|+++++++.|+ .
T Consensus 171 ~~~~--~~~~V~~v~fspdg-~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~ 246 (365)
T 4h5i_A 171 FEIE--TRGEVKDLHFSTDG-KVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIV 246 (365)
T ss_dssp EEEE--CSSCCCEEEECTTS-SEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEE
T ss_pred EEeC--CCCceEEEEEccCC-ceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeE
Confidence 9987 78899999999999 899998855 5777777776554444555566555 599999999999999887 6
Q ss_pred EEEEEcCCCcEEEE-EeeecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEEeeee-cCCCCCccceeeec
Q 003822 661 VRQLLAVDGRVHLN-FGITATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRLRDISL-EGKGSGTSMFVQSL 738 (793)
Q Consensus 661 I~IwDl~tg~~~~~-l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L-~gh~~~~s~~v~sl 738 (793)
+++|++..+..... ......+...+.+++|+|+|+ +||+|+.|++| +|||+.+++++. ++ .||
T Consensus 247 i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~-~lasgs~D~~V-~iwd~~~~~~~~--~~~~gH----------- 311 (365)
T 4h5i_A 247 LTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGE-LAVLASNDNSI-ALVKLKDLSMSK--IFKQAH----------- 311 (365)
T ss_dssp EEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSC-EEEEEETTSCE-EEEETTTTEEEE--EETTSS-----------
T ss_pred EeecccccceecceeeeeecCCCCCeEeEEECCCCC-ceEEEcCCCEE-EEEECCCCcEEE--EecCcc-----------
Confidence 88999887754221 112234567799999999999 99999999999 999999999987 43 444
Q ss_pred cCCccccCCccEEEEEEcCCCCceeeEeeEEEeCCCcEEEEcCCCCCCC
Q 003822 739 RGDPFRDFNMSILAAYTRPSSKSEIVKVNLLASTDHCDKECSHGQHSRP 787 (793)
Q Consensus 739 ~g~~~~~h~~~V~sva~~P~~~~~iv~~~ltaS~Dg~VkvW~~~~~~~~ 787 (793)
...|++++|+|++ ..++ +||.|++||||+++.+...
T Consensus 312 --------~~~V~~v~fSpdg-~~la----S~S~D~tvrvw~ip~~~~~ 347 (365)
T 4h5i_A 312 --------SFAITEVTISPDS-TYVA----SVSAANTIHIIKLPLNYAN 347 (365)
T ss_dssp --------SSCEEEEEECTTS-CEEE----EEETTSEEEEEECCTTTTC
T ss_pred --------cCCEEEEEECCCC-CEEE----EEeCCCeEEEEEcCCCCcC
Confidence 4689999999964 4566 8999999999999766433
No 33
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5.1e-33 Score=304.86 Aligned_cols=305 Identities=12% Similarity=0.089 Sum_probs=217.8
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCC--eEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCC
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENE--NIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPP 533 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~--~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~ 533 (793)
|++++|+| ++++|++|+.||.|++||+.++ +.+..+ .+|...|.+++|+ +++++|++|+.||+|++||+.++..
T Consensus 14 v~~~~~s~-~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~--~~h~~~v~~~~~s-~~~~~l~s~s~d~~v~vwd~~~~~~ 89 (377)
T 3dwl_C 14 SYEHAFNS-QRTEFVTTTATNQVELYEQDGNGWKHARTF--SDHDKIVTCVDWA-PKSNRIVTCSQDRNAYVYEKRPDGT 89 (377)
T ss_dssp CSCCEECS-SSSEEECCCSSSCBCEEEEETTEEEECCCB--CCCSSCEEEEEEC-TTTCCEEEEETTSSEEEC------C
T ss_pred EEEEEECC-CCCEEEEecCCCEEEEEEccCCceEEEEEE--ecCCceEEEEEEe-CCCCEEEEEeCCCeEEEEEcCCCCc
Confidence 88999999 9999999999999999999988 444444 4899999999998 7889999999999999999998651
Q ss_pred cccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCc---EEEEEcccCCCCeEEEEEcCCCCcEEE
Q 003822 534 SIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGR---RLQVFADMHKEHINVVKFSNHSPSIFA 610 (793)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~---~l~~~~~gh~~~V~sv~fspdg~~~La 610 (793)
.. .......|...|.+++|+|++..+++++.|+.|++||+++++ ....+..+|...|++++|+|++ .+|+
T Consensus 90 ~~------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~ 162 (377)
T 3dwl_C 90 WK------QTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNN-VLLA 162 (377)
T ss_dssp CC------CEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTS-SEEE
T ss_pred ee------eeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCC-CEEE
Confidence 00 001123456789999999999999999999999999999887 3677773499999999999998 8999
Q ss_pred EEeCCCeEEEEECCCCC----------------ccceEEccCCCCeE-EEEEecCCCEEEEEeCCCeEEEEEcCCCcE--
Q 003822 611 TSSFDQDVKLWDLRQKP----------------IQPCYTASSSKGNV-MVCFSPDDHYLLVSAVDNEVRQLLAVDGRV-- 671 (793)
Q Consensus 611 Tgs~Dg~IrIWDlrt~~----------------~~~~~~l~~~~~~v-sv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~-- 671 (793)
+|+.|+.|++||++... ......+ +|...+ +++|+|+|++|++++.||.|++||+.+++.
T Consensus 163 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~ 241 (377)
T 3dwl_C 163 AGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPP 241 (377)
T ss_dssp EEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCE
T ss_pred EEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcc
Confidence 99999999999986321 1233344 555544 699999999999999999999999999876
Q ss_pred --EEEEeeecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcC-CC-cEEEeeeecCCCCCcc---------------
Q 003822 672 --HLNFGITATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQ-TG-RRLRDISLEGKGSGTS--------------- 732 (793)
Q Consensus 672 --~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~-tg-~~l~~~~L~gh~~~~s--------------- 732 (793)
+..+. .+...+..++|+|++. +|++|+.|+.+ +|+.. ++ +... .+........
T Consensus 242 ~~~~~~~---~~~~~v~~~~~s~~~~-~l~~~~~~~~~--~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (377)
T 3dwl_C 242 RALITVK---LSQLPLRSLLWANESA-IVAAGYNYSPI--LLQGNESGWAHTR--DLDAGTSKTSFTHTGNTGEGREEEG 313 (377)
T ss_dssp EECCCEE---CSSSCEEEEEEEETTE-EEEEESSSSEE--EECCCC---CCSB--CCCSCCCCCCBSSSSSBCCCCCC--
T ss_pred eeeEeec---CCCCceEEEEEcCCCC-EEEEEcCCcEE--EEEeCCCceEEEe--eeccccccccccccccccccccccc
Confidence 44443 4566799999999998 88888766544 55554 33 1112 2221110000
Q ss_pred ---------ceee-e------ccCCccccCCccEEEEEEcCCCCceeeEeeEEEeCCCcEEEEcC
Q 003822 733 ---------MFVQ-S------LRGDPFRDFNMSILAAYTRPSSKSEIVKVNLLASTDHCDKECSH 781 (793)
Q Consensus 733 ---------~~v~-s------l~g~~~~~h~~~V~sva~~P~~~~~iv~~~ltaS~Dg~VkvW~~ 781 (793)
.|.. . ........|...|.++++.+....... ..++||.||.|++|++
T Consensus 314 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~-~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 314 PVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNIT-AFTSSGTDGRVVLWTL 377 (377)
T ss_dssp -----------------------CCCSSSCSSCEEEEEEEEEETTEEE-EEEEEETTSEEEEECC
T ss_pred ccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceE-EEEeecCCCcEEEecC
Confidence 0000 0 011122348899999998875444111 2349999999999984
No 34
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.5e-32 Score=302.39 Aligned_cols=309 Identities=15% Similarity=0.184 Sum_probs=238.3
Q ss_pred ceEEEEEeCCCCCEEEEEeCCCeEEEEECCC----CeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCC
Q 003822 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHEN----ENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRH 530 (793)
Q Consensus 455 ~V~~vafsP~d~~~Lasgs~DG~I~VWd~~t----~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~ 530 (793)
.|++++|+| ++.+|++|+.||.|++||+.+ .+.+..+. +|...|.+++|+|.++++|++++.||+|++||+.+
T Consensus 69 ~v~~~~~s~-~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~ 145 (416)
T 2pm9_A 69 KFNDLDWSH-NNKIIAGALDNGSLELYSTNEANNAINSMARFS--NHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNK 145 (416)
T ss_dssp CEEEEEECS-SSSCEEEEESSSCEEEECCSSTTSCCCEEEECC--CSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTT
T ss_pred ceEEEEECC-CCCeEEEEccCCeEEEeecccccccccchhhcc--CCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCC
Confidence 399999999 899999999999999999987 34565554 89999999999844489999999999999999998
Q ss_pred CCCcccccccCCceeEecCCCCeEEEEEccC-CCEEEEEECCCcEEEEECCCCcEEEEEcccC------CCCeEEEEEcC
Q 003822 531 MPPSIRGMHYGAGTVTFDEFDQLTSVHVNSM-DELFLASGYSKNIALYDINSGRRLQVFADMH------KEHINVVKFSN 603 (793)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~-~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh------~~~V~sv~fsp 603 (793)
++................|...|.+++|+|+ +..+++++.||.|++||+++++.+..+. .| ...|++++|+|
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~ 224 (416)
T 2pm9_A 146 CTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLS-YTSPNSGIKQQLSVVEWHP 224 (416)
T ss_dssp TSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEEC-CCCCSSCCCCCEEEEEECS
T ss_pred CccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEe-ccccccccCCceEEEEECC
Confidence 7621100000000011245678999999998 5677777889999999999999999887 34 78999999999
Q ss_pred CCCcEEEEEeCCC---eEEEEECCCCCccceEEcc-CCCCe-EEEEEec-CCCEEEEEeCCCeEEEEEcCCCcEEEEEee
Q 003822 604 HSPSIFATSSFDQ---DVKLWDLRQKPIQPCYTAS-SSKGN-VMVCFSP-DDHYLLVSAVDNEVRQLLAVDGRVHLNFGI 677 (793)
Q Consensus 604 dg~~~LaTgs~Dg---~IrIWDlrt~~~~~~~~l~-~~~~~-vsv~fSp-dg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~ 677 (793)
+++.++++++.|+ .|++||++++. .+...+. +|... .+++|+| ++++|++++.||.|++||+.+++.+..+.
T Consensus 225 ~~~~~l~~~~~d~~~~~i~~~d~~~~~-~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~- 302 (416)
T 2pm9_A 225 KNSTRVATATGSDNDPSILIWDLRNAN-TPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFP- 302 (416)
T ss_dssp SCTTEEEEEECCSSSCCCCEEETTSTT-SCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEE-
T ss_pred CCCCEEEEEECCCCCceEEEEeCCCCC-CCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeec-
Confidence 9867999999999 99999999853 2233444 45544 4699999 99999999999999999999999988876
Q ss_pred ecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEEeeeecC--------------------CCCCccceeee
Q 003822 678 TATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRLRDISLEG--------------------KGSGTSMFVQS 737 (793)
Q Consensus 678 ~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~g--------------------h~~~~s~~v~s 737 (793)
.+...+..++|+|++..+|++++.|+.| ++||+.+++... .... |..... .
T Consensus 303 --~~~~~v~~~~~s~~~~~~l~s~~~d~~i-~iw~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 373 (416)
T 2pm9_A 303 --ARGNWCFKTKFAPEAPDLFACASFDNKI-EVQTLQNLTNTL--DEQETETKQQESETDFWNNVSREESKEKPS----V 373 (416)
T ss_dssp --CSSSCCCCEEECTTCTTEEEECCSSSEE-EEEESCCCCCSS--CC----------------------CCSCCC----S
T ss_pred --CCCCceEEEEECCCCCCEEEEEecCCcE-EEEEccCCCCCc--ccccccccccCCcccccccccccccccccc----c
Confidence 4566788999999994499999999999 999999887544 2211 110000 0
Q ss_pred ccCCccccCCccEEEEEEcCCCCceeeEeeEEEeCCCcEEEEcCCC
Q 003822 738 LRGDPFRDFNMSILAAYTRPSSKSEIVKVNLLASTDHCDKECSHGQ 783 (793)
Q Consensus 738 l~g~~~~~h~~~V~sva~~P~~~~~iv~~~ltaS~Dg~VkvW~~~~ 783 (793)
+.......|...|.+++|+|++ ..++ +|+.||+|++|+...
T Consensus 374 ~~~~~~~~~~~~~~~~~~s~dg-~~la----~~~~d~~v~~w~~~~ 414 (416)
T 2pm9_A 374 FHLQAPTWYGEPSPAAHWAFGG-KLVQ----ITPDGKGVSITNPKI 414 (416)
T ss_dssp SCCCCCSTTCCCSCCCEEETTT-EEEC----BCTTSSCBCCBCCCC
T ss_pred ccccCCccccCCccceEEeeCC-eEEE----EeCCCCeEEEEEecc
Confidence 0111122356678899999964 4444 788899999999864
No 35
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1.4e-31 Score=299.80 Aligned_cols=237 Identities=14% Similarity=0.208 Sum_probs=210.4
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcc
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSI 535 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~ 535 (793)
|++++|+| ++++|++|+.||+|++||+.+++.+..+. +|...|.+++|+ +++++|++|+.|++|++||++++....
T Consensus 153 V~~v~~~~-~~~~l~sgs~D~~i~iwd~~~~~~~~~~~--~h~~~V~~v~~~-p~~~~l~s~s~D~~i~~wd~~~~~~~~ 228 (410)
T 1vyh_C 153 VQDISFDH-SGKLLASCSADMTIKLWDFQGFECIRTMH--GHDHNVSSVSIM-PNGDHIVSASRDKTIKMWEVQTGYCVK 228 (410)
T ss_dssp EEEEEECT-TSSEEEEEETTSCCCEEETTSSCEEECCC--CCSSCEEEEEEC-SSSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred EEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCceeEEEc--CCCCCEEEEEEe-CCCCEEEEEeCCCeEEEEECCCCcEEE
Confidence 99999999 89999999999999999999998887776 899999999998 789999999999999999999875421
Q ss_pred cccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCC----------
Q 003822 536 RGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHS---------- 605 (793)
Q Consensus 536 ~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg---------- 605 (793)
....|...|.++.+++++..+++++.|++|++||+.+++....+. +|...|.+++|+|++
T Consensus 229 ---------~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~~~~~~~ 298 (410)
T 1vyh_C 229 ---------TFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELR-EHRHVVECISWAPESSYSSISEATG 298 (410)
T ss_dssp ---------EEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC-CCSSCEEEEEECCSCGGGGGGGCCS
T ss_pred ---------EEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEec-CCCceEEEEEEcCcccccchhhhcc
Confidence 112455779999999999999999999999999999999999998 699999999999963
Q ss_pred ---------CcEEEEEeCCCeEEEEECCCCCccceEEccCCCCeE-EEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEE
Q 003822 606 ---------PSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNF 675 (793)
Q Consensus 606 ---------~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~~~~v-sv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l 675 (793)
+.+|++|+.|++|++||++++ ..+..+.+|...+ +++|+|+|++|++|+.||.|++||+.+++++..+
T Consensus 299 ~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~--~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~ 376 (410)
T 1vyh_C 299 SETKKSGKPGPFLLSGSRDKTIKMWDVSTG--MCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTL 376 (410)
T ss_dssp CC-------CCEEEEEETTSEEEEEETTTT--EEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEE
T ss_pred ccccccCCCCCEEEEEeCCCeEEEEECCCC--ceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEE
Confidence 268999999999999999987 4456666777766 5999999999999999999999999999988877
Q ss_pred eeecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEc
Q 003822 676 GITATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCA 713 (793)
Q Consensus 676 ~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv 713 (793)
. .|...+..++|+|++. +|++|+.||+| +||++
T Consensus 377 ~---~h~~~v~~l~~~~~~~-~l~sgs~D~~i-~vW~~ 409 (410)
T 1vyh_C 377 N---AHEHFVTSLDFHKTAP-YVVTGSVDQTV-KVWEC 409 (410)
T ss_dssp E---CCSSCEEEEEECSSSS-CEEEEETTSEE-EEEC-
T ss_pred c---CCCCcEEEEEEcCCCC-EEEEEeCCCcE-EEEeC
Confidence 5 4667899999999998 99999999999 99986
No 36
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=3.9e-31 Score=285.73 Aligned_cols=240 Identities=16% Similarity=0.251 Sum_probs=205.9
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcc
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSI 535 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~ 535 (793)
|++++|+| ++.+|++|+.||+|++||+.+++.+..+. +|...|.+++|+ +++.+|++|+.|++|++||++....
T Consensus 68 v~~~~~s~-dg~~l~s~s~D~~v~~wd~~~~~~~~~~~--~h~~~v~~~~~~-~~~~~l~s~s~D~~i~vwd~~~~~~-- 141 (319)
T 3frx_A 68 VQDCTLTA-DGAYALSASWDKTLRLWDVATGETYQRFV--GHKSDVMSVDID-KKASMIISGSRDKTIKVWTIKGQCL-- 141 (319)
T ss_dssp EEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEE--CCSSCEEEEEEC-TTSCEEEEEETTSCEEEEETTSCEE--
T ss_pred EEEEEECC-CCCEEEEEeCCCEEEEEECCCCCeeEEEc--cCCCcEEEEEEc-CCCCEEEEEeCCCeEEEEECCCCeE--
Confidence 89999999 99999999999999999999999988877 899999999997 7899999999999999999974211
Q ss_pred cccccCCceeEecCCCCeEEEEEccCC------CEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEE
Q 003822 536 RGMHYGAGTVTFDEFDQLTSVHVNSMD------ELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIF 609 (793)
Q Consensus 536 ~~~~~~~~~~~~~~~~~V~sv~~s~~~------~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~L 609 (793)
.....|...|.++.+.|.. ..+++++.|+.|++||+++++....+. +|...|++++|+|++ .+|
T Consensus 142 --------~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~-~h~~~v~~~~~sp~g-~~l 211 (319)
T 3frx_A 142 --------ATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFI-GHNSNINTLTASPDG-TLI 211 (319)
T ss_dssp --------EEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEEC-CCCSCEEEEEECTTS-SEE
T ss_pred --------EEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeec-CCCCcEEEEEEcCCC-CEE
Confidence 1123456789999998753 378888999999999999999999998 699999999999999 899
Q ss_pred EEEeCCCeEEEEECCCCCccceEEccCCCCeEEEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeec-----CCCCC
Q 003822 610 ATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITA-----TGSSQ 684 (793)
Q Consensus 610 aTgs~Dg~IrIWDlrt~~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~-----~~~~~ 684 (793)
++|+.||+|++||++++ ..+..+..+..+.+++|+|+|.++++++. +.+++|++..+..+..+.... .+...
T Consensus 212 ~s~~~dg~i~iwd~~~~--~~~~~~~~~~~v~~~~~sp~~~~la~~~~-~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (319)
T 3frx_A 212 ASAGKDGEIMLWNLAAK--KAMYTLSAQDEVFSLAFSPNRYWLAAATA-TGIKVFSLDPQYLVDDLRPEFAGYSKAAEPH 288 (319)
T ss_dssp EEEETTCEEEEEETTTT--EEEEEEECCSCEEEEEECSSSSEEEEEET-TEEEEEEETTEEEEEEECCCCTTCCGGGCCC
T ss_pred EEEeCCCeEEEEECCCC--cEEEEecCCCcEEEEEEcCCCCEEEEEcC-CCcEEEEeCcCeeeeccCccccccccCcCcc
Confidence 99999999999999987 44555566667778999999999999885 569999999887776664221 22446
Q ss_pred cEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCC
Q 003822 685 NYTRSYYLNGRDYIVSGSCDEHVVRICCAQTG 716 (793)
Q Consensus 685 v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg 716 (793)
+..++|+|+|+ +|++|+.||.| +|||+.|+
T Consensus 289 v~~~~~spdg~-~l~sg~~Dg~i-~vWd~~t~ 318 (319)
T 3frx_A 289 AVSLAWSADGQ-TLFAGYTDNVI-RVWQVMTA 318 (319)
T ss_dssp EEEEEECTTSS-EEEEEETTSCE-EEEEEEEC
T ss_pred eeEEEECCCCC-EEEEeecCceE-EEEEEeec
Confidence 78999999999 99999999999 99999775
No 37
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=3.9e-31 Score=286.34 Aligned_cols=288 Identities=10% Similarity=0.123 Sum_probs=225.9
Q ss_pred eEEEEEeCC---CCCEEEEEeCCCeEEEEECCCCeEEEEEec---cCCCCCEEEEEEeeCC---CCEEEEEEcCCcEEEE
Q 003822 456 PRQFEYHPS---ISCLMVFGTLDGEIVVVNHENENIVSYIPS---FGAMNSVLGLCWLKKY---PSKLIAGSDNGSLKLY 526 (793)
Q Consensus 456 V~~vafsP~---d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~---~~h~~~V~sv~fs~~~---g~~Lasgs~DgtV~vW 526 (793)
|++++|+|. ....+++++.++.|++||+.+++.+..+.. ..|...|.+++|++.. +.+|++|+.||.|++|
T Consensus 21 v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~ 100 (366)
T 3k26_A 21 LFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRII 100 (366)
T ss_dssp EEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEE
T ss_pred eEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEE
Confidence 999999983 355677777788999999998776655542 2377889999998432 5699999999999999
Q ss_pred EcCCCCCcccccccCCceeEecCCCCeEEEEEcc-CCCEEEEEECCCcEEEEECCCCcEEEEEc--ccCCCCeEEEEEcC
Q 003822 527 DIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNS-MDELFLASGYSKNIALYDINSGRRLQVFA--DMHKEHINVVKFSN 603 (793)
Q Consensus 527 Dl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~-~~~~lla~g~Dg~I~IWDl~tg~~l~~~~--~gh~~~V~sv~fsp 603 (793)
|+.+++... ....|...|.+++|+| ++..+++++.||.|++||+++++.+..+. .+|...|.+++|+|
T Consensus 101 d~~~~~~~~---------~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 171 (366)
T 3k26_A 101 NPITMQCIK---------HYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDL 171 (366)
T ss_dssp CTTTCCEEE---------EEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECT
T ss_pred EchhceEee---------eecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECC
Confidence 998865411 1224668899999999 78889999999999999999999999882 26999999999999
Q ss_pred CCCcEEEEEeCCCeEEEEECCCCCccce--------------------------EEccCCCC-eEEEEEecCCCEEEEEe
Q 003822 604 HSPSIFATSSFDQDVKLWDLRQKPIQPC--------------------------YTASSSKG-NVMVCFSPDDHYLLVSA 656 (793)
Q Consensus 604 dg~~~LaTgs~Dg~IrIWDlrt~~~~~~--------------------------~~l~~~~~-~vsv~fSpdg~~Lasgs 656 (793)
++ .+|++++.||.|++||+++++.... .....|.. +.+++|+ ++++++++
T Consensus 172 ~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~ 248 (366)
T 3k26_A 172 LG-EKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKS 248 (366)
T ss_dssp TS-SEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEEC
T ss_pred CC-CEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEe
Confidence 98 8999999999999999987532211 11122444 4468998 78999999
Q ss_pred CCCeEEEEEcCCCcE--------------EEEEeeecCCCCCcEEEEEeeC--CCeEEEEEeCCCcEEEEEEcCCCcEEE
Q 003822 657 VDNEVRQLLAVDGRV--------------HLNFGITATGSSQNYTRSYYLN--GRDYIVSGSCDEHVVRICCAQTGRRLR 720 (793)
Q Consensus 657 ~Dg~I~IwDl~tg~~--------------~~~l~~~~~~~~~v~s~afspd--g~~~L~Sgs~Dg~II~IWDv~tg~~l~ 720 (793)
.|+.|++||+.++.. +..+. .+...+..++|+|+ +. +|++|+.||.| ++||+.+++.+.
T Consensus 249 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~s~~~~~~-~l~~~~~dg~i-~vwd~~~~~~~~ 323 (366)
T 3k26_A 249 CENAIVCWKPGKMEDDIDKIKPSESNVTILGRFD---YSQCDIWYMRFSMDFWQK-MLALGNQVGKL-YVWDLEVEDPHK 323 (366)
T ss_dssp SSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEE---CSSCCSSCCCCEECTTSS-EEEEECTTSCE-EEEECCSSSGGG
T ss_pred cCCEEEEEeCCCccccccccccCCcchheecccc---ccCCcEEEEEEcCCCCCc-EEEEEecCCcE-EEEECCCCCCcc
Confidence 999999999988743 44443 45667888999999 88 99999999999 999999986432
Q ss_pred --eeeecCCCCCccceeeeccCCccccCCccEEEEEEcCCCCceeeEeeEEEeCCCcEEEEcCC
Q 003822 721 --DISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKSEIVKVNLLASTDHCDKECSHG 782 (793)
Q Consensus 721 --~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~~~~iv~~~ltaS~Dg~VkvW~~~ 782 (793)
...+.+|. |...|.+++|+|+ ...++ +|+.||.|++|+..
T Consensus 324 ~~~~~~~~~~-----------------~~~~v~~~~~s~~-~~~l~----s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 324 AKCTTLTHHK-----------------CGAAIRQTSFSRD-SSILI----AVCDDASIWRWDRL 365 (366)
T ss_dssp CEEEEECCTT-----------------CCSCEEEEEECTT-SSEEE----EEETTSEEEEEEC-
T ss_pred ccceEEcccc-----------------cCCceEEEEeCCC-CCeEE----EEeCCCEEEEEEec
Confidence 00333332 2468999999995 45566 89999999999873
No 38
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=1.6e-30 Score=291.39 Aligned_cols=281 Identities=14% Similarity=0.203 Sum_probs=230.8
Q ss_pred cceEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCC
Q 003822 454 FRPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPP 533 (793)
Q Consensus 454 ~~V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~ 533 (793)
|+...|+|++ + ++||+|. |++|+|||..+|+....+...+|...|++|+|+ ++|++|++|+.||+|++||+++++.
T Consensus 106 ~y~~~l~wS~-~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fs-pdg~~lasgs~Dg~v~iWd~~~~~~ 181 (420)
T 4gga_A 106 YYLNLVDWSS-G-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWI-KEGNYLAVGTSSAEVQLWDVQQQKR 181 (420)
T ss_dssp TTCBCEEECT-T-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEEC-TTSSEEEEEETTSCEEEEETTTTEE
T ss_pred ccceeEEECC-C-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEEC-CCCCEEEEEECCCeEEEEEcCCCcE
Confidence 6788999998 4 4788776 999999999999999888888899999999998 7999999999999999999998654
Q ss_pred cccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCC-cEEEEEcccCCCCeEEEEEcCCCCcEEEEE
Q 003822 534 SIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSG-RRLQVFADMHKEHINVVKFSNHSPSIFATS 612 (793)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg-~~l~~~~~gh~~~V~sv~fspdg~~~LaTg 612 (793)
.. . ...|...+.++++ ++..+++++.|+.+++||.... ..+..+. +|...+..+.|+|++ .+++++
T Consensus 182 ~~-~--------~~~h~~~v~~~s~--~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~-~h~~~~~~~~~~~~g-~~l~s~ 248 (420)
T 4gga_A 182 LR-N--------MTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLS-GHSQEVCGLRWAPDG-RHLASG 248 (420)
T ss_dssp EE-E--------ECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEE-CCSSCEEEEEECTTS-SEEEEE
T ss_pred EE-E--------EeCCCCceEEEee--CCCEEEEEeCCCceeEeeecccceeeEEec-ccccceeeeeecCCC-Ceeeee
Confidence 21 1 1234567888877 4678888889999999999874 4566777 799999999999999 899999
Q ss_pred eCCCeEEEEECCCCCc--cceEEccCCCCeE-EEEEecCCC-EEEEE--eCCCeEEEEEcCCCcEEEEEeeecCCCCCcE
Q 003822 613 SFDQDVKLWDLRQKPI--QPCYTASSSKGNV-MVCFSPDDH-YLLVS--AVDNEVRQLLAVDGRVHLNFGITATGSSQNY 686 (793)
Q Consensus 613 s~Dg~IrIWDlrt~~~--~~~~~l~~~~~~v-sv~fSpdg~-~Lasg--s~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~ 686 (793)
+.|+.+++||..++.. ........+...+ .++|+|++. .++++ +.|+.|++||+.+++....+. .+..+.
T Consensus 249 ~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~----~~~~v~ 324 (420)
T 4gga_A 249 GNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD----AHSQVC 324 (420)
T ss_dssp ETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEE----CSSCEE
T ss_pred eccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeec----ccccee
Confidence 9999999999987642 2334445555555 599999654 55544 479999999999999988775 456789
Q ss_pred EEEEeeCCCeEEEEEe--CCCcEEEEEEcCCCcEEEeeeecCCCCCccceeeeccCCccccCCccEEEEEEcCCCCceee
Q 003822 687 TRSYYLNGRDYIVSGS--CDEHVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKSEIV 764 (793)
Q Consensus 687 s~afspdg~~~L~Sgs--~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~~~~iv 764 (793)
.+.|++++. .+++++ .|+.| +|||+.+++++. ++.||. +.|++++|+|+ ...++
T Consensus 325 ~~~~~~~~~-~lv~~sg~~d~~I-~iwd~~~~~~v~--~l~gH~-------------------~~V~~l~~spd-g~~l~ 380 (420)
T 4gga_A 325 SILWSPHYK-ELISGHGFAQNQL-VIWKYPTMAKVA--ELKGHT-------------------SRVLSLTMSPD-GATVA 380 (420)
T ss_dssp EEEEETTTT-EEEEEECTTTCCE-EEEETTTCCEEE--EECCCS-------------------SCEEEEEECTT-SSCEE
T ss_pred eeeecCCCC-eEEEEEecCCCEE-EEEECCCCcEEE--EEcCCC-------------------CCEEEEEEcCC-CCEEE
Confidence 999999999 555544 78999 999999999998 777765 57999999996 44566
Q ss_pred EeeEEEeCCCcEEEEcCCC
Q 003822 765 KVNLLASTDHCDKECSHGQ 783 (793)
Q Consensus 765 ~~~ltaS~Dg~VkvW~~~~ 783 (793)
+||.||+||+|+..+
T Consensus 381 ----S~s~D~tvriWdv~~ 395 (420)
T 4gga_A 381 ----SAAADETLRLWRCFE 395 (420)
T ss_dssp ----EEETTTEEEEECCSC
T ss_pred ----EEecCCeEEEEECCC
Confidence 899999999999754
No 39
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.8e-31 Score=289.51 Aligned_cols=305 Identities=12% Similarity=0.098 Sum_probs=231.9
Q ss_pred ceEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCc
Q 003822 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS 534 (793)
Q Consensus 455 ~V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~ 534 (793)
.|++++|+| ++++|++|+.||.|++|| .+++.+..+. +|...|.+++|+ +++++|++++.||.|++||+.+++..
T Consensus 110 ~v~~~~~s~-~~~~l~~~~~dg~i~i~~-~~~~~~~~~~--~~~~~v~~~~~~-~~~~~l~~~~~d~~i~iwd~~~~~~~ 184 (425)
T 1r5m_A 110 QVTCLAWSH-DGNSIVTGVENGELRLWN-KTGALLNVLN--FHRAPIVSVKWN-KDGTHIISMDVENVTILWNVISGTVM 184 (425)
T ss_dssp CEEEEEECT-TSSEEEEEETTSCEEEEE-TTSCEEEEEC--CCCSCEEEEEEC-TTSSEEEEEETTCCEEEEETTTTEEE
T ss_pred ceEEEEEcC-CCCEEEEEeCCCeEEEEe-CCCCeeeecc--CCCccEEEEEEC-CCCCEEEEEecCCeEEEEECCCCcEE
Confidence 399999999 999999999999999999 5677777776 899999999998 78999999999999999999876542
Q ss_pred ccccccCCce-------eEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCc
Q 003822 535 IRGMHYGAGT-------VTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPS 607 (793)
Q Consensus 535 ~~~~~~~~~~-------~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~ 607 (793)
.. ...+... ........+.++.|+++ +.+++++.+|.|++||+.+++.+..+. +|...|.+++|+|++ .
T Consensus 185 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~i~~~d~~~~~~~~~~~-~~~~~i~~~~~~~~~-~ 260 (425)
T 1r5m_A 185 QH-FELKETGGSSINAENHSGDGSLGVDVEWVDD-DKFVIPGPKGAIFVYQITEKTPTGKLI-GHHGPISVLEFNDTN-K 260 (425)
T ss_dssp EE-ECCC---------------CCCBSCCEEEET-TEEEEECGGGCEEEEETTCSSCSEEEC-CCSSCEEEEEEETTT-T
T ss_pred EE-eeccccCccceeeccccCCcceeeEEEEcCC-CEEEEEcCCCeEEEEEcCCCceeeeec-cCCCceEEEEECCCC-C
Confidence 11 1111000 00011122888899764 778888999999999999999999998 699999999999999 7
Q ss_pred EEEEEeCCCeEEEEECCCCCccceEEccCCCCeE-EEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcE
Q 003822 608 IFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNY 686 (793)
Q Consensus 608 ~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~~~~v-sv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~ 686 (793)
+|++++.||.|++||+++++. ...+..+...+ +++|+|++ ++++++.|+.|++||+.+++.+..+. .+...+.
T Consensus 261 ~l~~~~~d~~i~i~d~~~~~~--~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~---~~~~~i~ 334 (425)
T 1r5m_A 261 LLLSASDDGTLRIWHGGNGNS--QNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSI---VDGVPIF 334 (425)
T ss_dssp EEEEEETTSCEEEECSSSBSC--SEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEE---CTTCCEE
T ss_pred EEEEEcCCCEEEEEECCCCcc--ceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecc---cCCccEE
Confidence 999999999999999998744 34445555544 69999999 99999999999999999999887775 3566889
Q ss_pred EEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCCCCccceeeeccCCccccCCc--cEEEEEEcCCCCceee
Q 003822 687 TRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNM--SILAAYTRPSSKSEIV 764 (793)
Q Consensus 687 s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~--~V~sva~~P~~~~~iv 764 (793)
.++|+|++. +|++|+.||.| ++||+.+++.... .+.++..+.......-.-..+.+|.. .|.+++|+|++ ..++
T Consensus 335 ~~~~s~~~~-~l~~~~~dg~i-~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~ 410 (425)
T 1r5m_A 335 AGRISQDGQ-KYAVAFMDGQV-NVYDLKKLNSKSR-SLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAG-NKIS 410 (425)
T ss_dssp EEEECTTSS-EEEEEETTSCE-EEEECHHHHC---------------CEECCEEEEECCTTCCCCEEEEEECTTS-SEEE
T ss_pred EEEEcCCCC-EEEEEECCCeE-EEEECCCCcccee-eeecccccccCcccchhhhhhcCcccCCceEEEEccCCC-ceEE
Confidence 999999998 99999999999 9999998872110 11111110000000000012334444 89999999964 3555
Q ss_pred EeeEEEeCCCcEEEEcCC
Q 003822 765 KVNLLASTDHCDKECSHG 782 (793)
Q Consensus 765 ~~~ltaS~Dg~VkvW~~~ 782 (793)
+++.||.|++|+++
T Consensus 411 ----~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 411 ----VAYSLQEGSVVAIP 424 (425)
T ss_dssp ----EEESSSCCEEEECC
T ss_pred ----EEecCceEEEEeec
Confidence 89999999999975
No 40
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=5.6e-31 Score=292.57 Aligned_cols=292 Identities=11% Similarity=0.122 Sum_probs=227.2
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcc
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSI 535 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~ 535 (793)
+....|+| ++++|++|+.||.|++||+.+++....+. +|...|.+++|+ +++++|++|+.||+|++||+.+++...
T Consensus 100 ~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~h~~~v~~~~~~-~~~~~l~s~s~d~~i~iwd~~~~~~~~ 175 (420)
T 3vl1_A 100 TAVDTAKL-QMRRFILGTTEGDIKVLDSNFNLQREIDQ--AHVSEITKLKFF-PSGEALISSSQDMQLKIWSVKDGSNPR 175 (420)
T ss_dssp EEEEEECS-SSCEEEEEETTSCEEEECTTSCEEEEETT--SSSSCEEEEEEC-TTSSEEEEEETTSEEEEEETTTCCCCE
T ss_pred eEEEEEec-CCCEEEEEECCCCEEEEeCCCcceeeecc--cccCccEEEEEC-CCCCEEEEEeCCCeEEEEeCCCCcCce
Confidence 44456788 99999999999999999999988876655 899999999998 789999999999999999999866421
Q ss_pred cccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcc--cCCCCeEEEE-------------
Q 003822 536 RGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFAD--MHKEHINVVK------------- 600 (793)
Q Consensus 536 ~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~--gh~~~V~sv~------------- 600 (793)
....|...|.+++|+|++..+++++.||.|++||+++++.+..+.. .|...|.+++
T Consensus 176 ---------~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 246 (420)
T 3vl1_A 176 ---------TLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEIS 246 (420)
T ss_dssp ---------EEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGC
T ss_pred ---------EEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecc
Confidence 1224668899999999999999999999999999999999998873 2444555555
Q ss_pred --------EcCCCCcEEEEEeCCCeEEEEECCCCCccceEEccCCC-CeEEEEEecCCC-EEEEEeCCCeEEEEEcCCCc
Q 003822 601 --------FSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSK-GNVMVCFSPDDH-YLLVSAVDNEVRQLLAVDGR 670 (793)
Q Consensus 601 --------fspdg~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~~-~~vsv~fSpdg~-~Lasgs~Dg~I~IwDl~tg~ 670 (793)
|+|++ .++++|+.||.|++||++++...... ..++. .+.+++|+|+++ +|++|+.||.|++||+.+++
T Consensus 247 ~~~v~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~ 324 (420)
T 3vl1_A 247 TSKKNNLEFGTYG-KYVIAGHVSGVITVHNVFSKEQTIQL-PSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPE 324 (420)
T ss_dssp CCCCCTTCSSCTT-EEEEEEETTSCEEEEETTTCCEEEEE-CCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTT
T ss_pred cCcccceEEcCCC-CEEEEEcCCCeEEEEECCCCceeEEc-ccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCc
Confidence 56777 89999999999999999987543322 23344 455699999999 99999999999999999875
Q ss_pred E-EEEEeeecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCCCCccceeeeccCCccccCCcc
Q 003822 671 V-HLNFGITATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMS 749 (793)
Q Consensus 671 ~-~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~ 749 (793)
. +..+.. ++.......++++++ +|++|+.||.| ++|++..+.... .+.... ....+.+|...
T Consensus 325 ~~~~~~~~---~~~~~v~~~~~~~~~-~l~s~~~d~~v-~iw~~~~~~~~~--~~~~~~----------~~~~~~~~~~~ 387 (420)
T 3vl1_A 325 CPVGEFLI---NEGTPINNVYFAAGA-LFVSSGFDTSI-KLDIISDPESER--PAIEFE----------TPTFLVSNDDA 387 (420)
T ss_dssp SCSEEEEE---STTSCEEEEEEETTE-EEEEETTTEEE-EEEEECCTTCCS--CEECTT----------SCEEECCSSCC
T ss_pred Cchhhhhc---cCCCCceEEEeCCCC-EEEEecCCccE-EEEeccCCCCCc--cceecc----------CccEEccCCcc
Confidence 4 555542 233444555677777 99999999999 999998754433 111111 00123356778
Q ss_pred EEEEEEcCCCCc--eeeEeeEEEeCCCcEEEEcCCC
Q 003822 750 ILAAYTRPSSKS--EIVKVNLLASTDHCDKECSHGQ 783 (793)
Q Consensus 750 V~sva~~P~~~~--~iv~~~ltaS~Dg~VkvW~~~~ 783 (793)
|.+++|+|++.. .++ .++.+|.+++|+...
T Consensus 388 v~~~~~s~~~~~~g~l~----a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 388 VSQFCYVSDDESNGEVL----EVGKNNFCALYNLSN 419 (420)
T ss_dssp CCEEEEECCSSSSCEEE----EEETTTEEEEEESCC
T ss_pred eEEEEEccCCCCcceEE----EEcCCceEEEEeccC
Confidence 999999997542 455 778899999999864
No 41
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-32 Score=304.12 Aligned_cols=294 Identities=14% Similarity=0.183 Sum_probs=232.4
Q ss_pred eEEEEEeCCCCC-EEEEE----------eCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEE
Q 003822 456 PRQFEYHPSISC-LMVFG----------TLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLK 524 (793)
Q Consensus 456 V~~vafsP~d~~-~Lasg----------s~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~ 524 (793)
|++++|+| ++. ++++| +.||.|+|||+.+++....+....|...|.+++|+ +++.+|++|+.||.|+
T Consensus 15 v~~~~~sp-~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~dg~v~ 92 (416)
T 2pm9_A 15 TATFAWSH-DKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWS-HNNKIIAGALDNGSLE 92 (416)
T ss_dssp SCBCCBCS-SSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEEC-SSSSCEEEEESSSCEE
T ss_pred cceEeeCC-CCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEEC-CCCCeEEEEccCCeEE
Confidence 78899999 655 99999 88999999999887532222223688999999998 7899999999999999
Q ss_pred EEEcCCCCCcccccccCCceeEecCCCCeEEEEEccC-CCEEEEEECCCcEEEEECCCCc------EEEEE---cccCCC
Q 003822 525 LYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSM-DELFLASGYSKNIALYDINSGR------RLQVF---ADMHKE 594 (793)
Q Consensus 525 vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~-~~~lla~g~Dg~I~IWDl~tg~------~l~~~---~~gh~~ 594 (793)
+||+.+....... ......|...|.+++|+|+ +..+++++.||.|++||+.+++ ....+ . +|..
T Consensus 93 vw~~~~~~~~~~~-----~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~-~~~~ 166 (416)
T 2pm9_A 93 LYSTNEANNAINS-----MARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSM-SSVD 166 (416)
T ss_dssp EECCSSTTSCCCE-----EEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSC-CSSC
T ss_pred Eeecccccccccc-----hhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcccccccccccccccc-CCCC
Confidence 9999873210000 0112245678999999998 7788888899999999999876 33332 3 5999
Q ss_pred CeEEEEEcCCCCcEEEEEeCCCeEEEEECCCCCccceEEccC-----CCCeEEEEEecCC-CEEEEEeCCC---eEEEEE
Q 003822 595 HINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASS-----SKGNVMVCFSPDD-HYLLVSAVDN---EVRQLL 665 (793)
Q Consensus 595 ~V~sv~fspdg~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~-----~~~~vsv~fSpdg-~~Lasgs~Dg---~I~IwD 665 (793)
.|.+++|+|+++.++++++.||.|++||+++++......... ...+.+++|+|++ .++++++.|+ .|++||
T Consensus 167 ~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d 246 (416)
T 2pm9_A 167 EVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWD 246 (416)
T ss_dssp CCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEE
T ss_pred CeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEe
Confidence 999999999955899999999999999999874433333221 3345579999997 6899999998 999999
Q ss_pred cCCC-cEEEEEeeecCCCCCcEEEEEee-CCCeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCCCCccceeeeccCCcc
Q 003822 666 AVDG-RVHLNFGITATGSSQNYTRSYYL-NGRDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPF 743 (793)
Q Consensus 666 l~tg-~~~~~l~~~~~~~~~v~s~afsp-dg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~ 743 (793)
+.++ .....+. ..+...+..++|+| ++. +|++|+.||.| ++||+.+++.+. .+.+|.
T Consensus 247 ~~~~~~~~~~~~--~~~~~~v~~~~~s~~~~~-~l~s~~~dg~v-~~wd~~~~~~~~--~~~~~~--------------- 305 (416)
T 2pm9_A 247 LRNANTPLQTLN--QGHQKGILSLDWCHQDEH-LLLSSGRDNTV-LLWNPESAEQLS--QFPARG--------------- 305 (416)
T ss_dssp TTSTTSCSBCCC--SCCSSCEEEEEECSSCSS-CEEEEESSSEE-EEECSSSCCEEE--EEECSS---------------
T ss_pred CCCCCCCcEEee--cCccCceeEEEeCCCCCC-eEEEEeCCCCE-EEeeCCCCccce--eecCCC---------------
Confidence 9987 4433332 14567899999999 666 99999999999 999999999988 666654
Q ss_pred ccCCccEEEEEEcCCCCceeeEeeEEEeCCCcEEEEcCCCCCC
Q 003822 744 RDFNMSILAAYTRPSSKSEIVKVNLLASTDHCDKECSHGQHSR 786 (793)
Q Consensus 744 ~~h~~~V~sva~~P~~~~~iv~~~ltaS~Dg~VkvW~~~~~~~ 786 (793)
..|.+++|+|+++..++ +++.||.|++|+......
T Consensus 306 ----~~v~~~~~s~~~~~~l~----s~~~d~~i~iw~~~~~~~ 340 (416)
T 2pm9_A 306 ----NWCFKTKFAPEAPDLFA----CASFDNKIEVQTLQNLTN 340 (416)
T ss_dssp ----SCCCCEEECTTCTTEEE----ECCSSSEEEEEESCCCCC
T ss_pred ----CceEEEEECCCCCCEEE----EEecCCcEEEEEccCCCC
Confidence 46889999997667777 899999999999876653
No 42
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=4.2e-30 Score=273.39 Aligned_cols=281 Identities=13% Similarity=0.187 Sum_probs=224.6
Q ss_pred cceEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCC
Q 003822 454 FRPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPP 533 (793)
Q Consensus 454 ~~V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~ 533 (793)
++.++|+|+| ++ +||+|. |++|+|||+++++.+..+...+|...|.+++|+ +++++|++|+.||+|++||+++++.
T Consensus 26 ~y~~~l~WS~-~~-~lAvg~-D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~-~~~~~l~sgs~Dg~v~iw~~~~~~~ 101 (318)
T 4ggc_A 26 YYLNLVDWSS-GN-VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWI-KEGNYLAVGTSSAEVQLWDVQQQKR 101 (318)
T ss_dssp TTCBCEEECT-TS-EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEEC-TTSSEEEEEETTSEEEEEETTTTEE
T ss_pred ccceEEEECC-CC-EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCeEEEEEEC-CCCCEEEEEECCCcEEEeecCCcee
Confidence 4467899999 54 777765 999999999999999998888899999999998 7899999999999999999998754
Q ss_pred cccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCc-EEEEEcccCCCCeEEEEEcCCCCcEEEEE
Q 003822 534 SIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGR-RLQVFADMHKEHINVVKFSNHSPSIFATS 612 (793)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~-~l~~~~~gh~~~V~sv~fspdg~~~LaTg 612 (793)
.. . ...|...+.++.+ .+..+++++.++.+++|+...+. .+..+. +|...+..+.+++++ .+++++
T Consensus 102 ~~-~--------~~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~l~s~ 168 (318)
T 4ggc_A 102 LR-N--------MTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLS-GHSQEVCGLRWAPDG-RHLASG 168 (318)
T ss_dssp EE-E--------EECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEE-CCSSCEEEEEECTTS-SEEEEE
T ss_pred EE-E--------ecCccceEEEeec--CCCEEEEEecCCceEeeecCCCceeEEEEc-CccCceEEEEEcCCC-CEEEEE
Confidence 21 1 1233445555554 56788888899999999998764 556666 799999999999999 899999
Q ss_pred eCCCeEEEEECCCCCcc--ceEEccCCCCe-EEEEEecCCCEE---EEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcE
Q 003822 613 SFDQDVKLWDLRQKPIQ--PCYTASSSKGN-VMVCFSPDDHYL---LVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNY 686 (793)
Q Consensus 613 s~Dg~IrIWDlrt~~~~--~~~~l~~~~~~-vsv~fSpdg~~L---asgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~ 686 (793)
+.||+|++||+++++.. .......+.+. ..+.++|++..+ ++++.++.|++||...+....... +...+.
T Consensus 169 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~----~~~~v~ 244 (318)
T 4ggc_A 169 GNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD----AHSQVC 244 (318)
T ss_dssp ETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE----CSSCEE
T ss_pred ecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccc----ceeeee
Confidence 99999999999876432 22333344444 458999976543 356678999999999988766553 566788
Q ss_pred EEEEeeCCCeEEEEE--eCCCcEEEEEEcCCCcEEEeeeecCCCCCccceeeeccCCccccCCccEEEEEEcCCCCceee
Q 003822 687 TRSYYLNGRDYIVSG--SCDEHVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKSEIV 764 (793)
Q Consensus 687 s~afspdg~~~L~Sg--s~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~~~~iv 764 (793)
.+.|++++. .++++ +.|+.| ++||+.+++++. ++.||. +.|.+++|+|+ ...++
T Consensus 245 ~~~~~~~~~-~~~~~sg~~d~~i-~iwd~~~~~~~~--~l~gH~-------------------~~V~~l~~spd-g~~l~ 300 (318)
T 4ggc_A 245 SILWSPHYK-ELISGHGFAQNQL-VIWKYPTMAKVA--ELKGHT-------------------SRVLSLTMSPD-GATVA 300 (318)
T ss_dssp EEEEETTTT-EEEEEECTTTCCE-EEEETTTCCEEE--EECCCS-------------------SCEEEEEECTT-SSCEE
T ss_pred eeeeccccc-ceEEEEEcCCCEE-EEEECCCCcEEE--EEcCCC-------------------CCEEEEEEcCC-CCEEE
Confidence 999999998 55544 378999 999999999999 777765 57999999996 44566
Q ss_pred EeeEEEeCCCcEEEEcCCC
Q 003822 765 KVNLLASTDHCDKECSHGQ 783 (793)
Q Consensus 765 ~~~ltaS~Dg~VkvW~~~~ 783 (793)
+||.||+|++|+..+
T Consensus 301 ----S~s~D~~v~iWd~~~ 315 (318)
T 4ggc_A 301 ----SAAADETLRLWRCFE 315 (318)
T ss_dssp ----EEETTTEEEEECCSC
T ss_pred ----EEecCCeEEEEECCC
Confidence 899999999999754
No 43
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=6.1e-31 Score=294.37 Aligned_cols=311 Identities=18% Similarity=0.247 Sum_probs=226.0
Q ss_pred ceEEEEEeCCCCCEEEEEeCCCeEEEEECCCCe-----------EEEEEeccCCC------------CCEEEEEEeeCCC
Q 003822 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENEN-----------IVSYIPSFGAM------------NSVLGLCWLKKYP 511 (793)
Q Consensus 455 ~V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~-----------~i~~l~~~~h~------------~~V~sv~fs~~~g 511 (793)
.|++++|+| ++++||+|+.||.|+|||+.+++ ....+. +|. ..|.+++|+ +++
T Consensus 30 ~V~~v~~s~-~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~--~h~~~~~~~~~~~~~~~V~~l~~~-~~~ 105 (447)
T 3dw8_B 30 IISTVEFNH-SGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQ--SHEPEFDYLKSLEIEEKINKIRWL-PQK 105 (447)
T ss_dssp SEEEEEECS-SSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEE--CCCCEEEGGGTEEECCCCCEEEEC-CCC
T ss_pred cEEEEEECC-CCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccc--cccccccccccccccCceEEEEEc-CCC
Confidence 499999999 99999999999999999998776 355555 787 889999998 555
Q ss_pred --CEEEEEEcCCcEEEEEcCCCCCccccc--ccCC-----------------------------ceeEecCCCCeEEEEE
Q 003822 512 --SKLIAGSDNGSLKLYDIRHMPPSIRGM--HYGA-----------------------------GTVTFDEFDQLTSVHV 558 (793)
Q Consensus 512 --~~Lasgs~DgtV~vWDl~~~~~~~~~~--~~~~-----------------------------~~~~~~~~~~V~sv~~ 558 (793)
..|++++.||+|++||+.++....... ..+. ......|...|.+++|
T Consensus 106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 185 (447)
T 3dw8_B 106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI 185 (447)
T ss_dssp SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence 799999999999999997633210000 0000 0111346788999999
Q ss_pred ccCCCEEEEEECCCcEEEEECCC-CcEEEEE------cccCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEECCCCCcc--
Q 003822 559 NSMDELFLASGYSKNIALYDINS-GRRLQVF------ADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQ-- 629 (793)
Q Consensus 559 s~~~~~lla~g~Dg~I~IWDl~t-g~~l~~~------~~gh~~~V~sv~fspdg~~~LaTgs~Dg~IrIWDlrt~~~~-- 629 (793)
+|++..++++ .|+.|++||+++ ++.+..+ ..+|...|++++|+|+++.+|++|+.||.|++||++++...
T Consensus 186 ~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 264 (447)
T 3dw8_B 186 NSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDR 264 (447)
T ss_dssp CTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCT
T ss_pred cCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccc
Confidence 9988888887 899999999994 4455432 12699999999999998689999999999999999987531
Q ss_pred ceEEccCCC-------------CeEEEEEecCCCEEEEEeCCCeEEEEEcCC-CcEEEEEeeecCCCC------------
Q 003822 630 PCYTASSSK-------------GNVMVCFSPDDHYLLVSAVDNEVRQLLAVD-GRVHLNFGITATGSS------------ 683 (793)
Q Consensus 630 ~~~~l~~~~-------------~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~t-g~~~~~l~~~~~~~~------------ 683 (793)
....+.++. .+.+++|+|+|++|++++. +.|++||+.+ ++.+..+..+.....
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~ 343 (447)
T 3dw8_B 265 HSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIF 343 (447)
T ss_dssp TCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGG
T ss_pred eeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccccc
Confidence 134555554 4557999999999999998 9999999997 777777753321111
Q ss_pred CcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCCCCccc--eeee---ccC---------CccccCCcc
Q 003822 684 QNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKGSGTSM--FVQS---LRG---------DPFRDFNMS 749 (793)
Q Consensus 684 ~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~--~v~s---l~g---------~~~~~h~~~ 749 (793)
.+..++|+|++. +|++|+.||.| ++||+.+++.+ .+.++...... .... ..+ .....+...
T Consensus 344 ~~~~~~~s~~~~-~l~s~s~dg~v-~iwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (447)
T 3dw8_B 344 DKFECCWNGSDS-VVMTGSYNNFF-RMFDRNTKRDI---TLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKK 418 (447)
T ss_dssp CCCCEEECTTSS-EEEEECSTTEE-EEEETTTCCEE---EEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSC
T ss_pred cceEEEECCCCC-EEEEeccCCEE-EEEEcCCCcce---eeeecccccccccccCCccccccCCcccccccccccccCCc
Confidence 123489999999 99999999999 99999999876 45554321110 0000 000 001145568
Q ss_pred EEEEEEcCCCCceeeEeeEEEeCCCcEEEEcCC
Q 003822 750 ILAAYTRPSSKSEIVKVNLLASTDHCDKECSHG 782 (793)
Q Consensus 750 V~sva~~P~~~~~iv~~~ltaS~Dg~VkvW~~~ 782 (793)
|..++|||+ ...++ +|+.++ +.+|...
T Consensus 419 i~~~~~~p~-~~~la----~~~~~~-~~~~~~~ 445 (447)
T 3dw8_B 419 ILHTAWHPK-ENIIA----VATTNN-LYIFQDK 445 (447)
T ss_dssp CCEEEECSS-SSEEE----EECSSC-EEEEECC
T ss_pred eeEEEECCC-CCEEE----EEecce-eeeeccc
Confidence 999999996 44455 566665 6888653
No 44
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.4e-32 Score=314.33 Aligned_cols=308 Identities=11% Similarity=0.033 Sum_probs=211.4
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeEEE--EEeccCCCCCEEEEEEeeC-----CCCEEEEEEcCCcEEEEEcCCCCCccc-
Q 003822 465 ISCLMVFGTLDGEIVVVNHENENIVS--YIPSFGAMNSVLGLCWLKK-----YPSKLIAGSDNGSLKLYDIRHMPPSIR- 536 (793)
Q Consensus 465 d~~~Lasgs~DG~I~VWd~~t~~~i~--~l~~~~h~~~V~sv~fs~~-----~g~~Lasgs~DgtV~vWDl~~~~~~~~- 536 (793)
++..+++|+.||+|+||++.+++... .....+|.+.|.+++|+|. ++.+||+|+.||+|++||+.++.....
T Consensus 172 ~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~ 251 (524)
T 2j04_B 172 HLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHV 251 (524)
T ss_dssp ----------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSE
T ss_pred hhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcccccc
Confidence 44556667789999999998776421 1112267889999999953 357999999999999999987643200
Q ss_pred ccccCCceeE-ecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCc-EEEEEcccCCCCeEEE--EEcCCCCcEEEEE
Q 003822 537 GMHYGAGTVT-FDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGR-RLQVFADMHKEHINVV--KFSNHSPSIFATS 612 (793)
Q Consensus 537 ~~~~~~~~~~-~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~-~l~~~~~gh~~~V~sv--~fspdg~~~LaTg 612 (793)
.......... ..|...|.+++|+++ +.+++|+.||+|++||++++. +...+. +|...|++| .|+|+++.+||||
T Consensus 252 ~~~~~~p~~~l~~h~~~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~~~~~~~~-~H~~~V~sv~~~~s~~g~~~laS~ 329 (524)
T 2j04_B 252 FKMCEKPSLTLSLADSLITTFDFLSP-TTVVCGFKNGFVAEFDLTDPEVPSFYDQ-VHDSYILSVSTAYSDFEDTVVSTV 329 (524)
T ss_dssp EECCCSCSEEECCTTTCEEEEEESSS-SEEEEEETTSEEEEEETTBCSSCSEEEE-CSSSCEEEEEEECCTTSCCEEEEE
T ss_pred ceeecCceEEEEcCCCCEEEEEecCC-CeEEEEeCCCEEEEEECCCCCCceEEee-cccccEEEEEEEcCCCCCeEEEEe
Confidence 0000011112 245678999999864 588889999999999999764 455677 699999999 5677654799999
Q ss_pred eCCCeEEEEECCCCCccceEEccCCC-CeEEEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEe
Q 003822 613 SFDQDVKLWDLRQKPIQPCYTASSSK-GNVMVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYY 691 (793)
Q Consensus 613 s~Dg~IrIWDlrt~~~~~~~~l~~~~-~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afs 691 (793)
+.|++|+|||+++++........... .+.+++|+|+++.+++++.|++|++||++++.++.++. .|...|.+++|+
T Consensus 330 S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~---gH~~~V~sva~S 406 (524)
T 2j04_B 330 AVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLV---SRETTITAIGVS 406 (524)
T ss_dssp ETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEE---ECSSCEEEEECC
T ss_pred ccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeee---cCCCceEEEEeC
Confidence 99999999999986544333322211 24469999999999999999999999999998877765 366789999999
Q ss_pred eCCCeEEEEEeCCCcEEEEEEcCCCcEEEe-------------eeecCCCCCccc------ee-----eeccCCccccCC
Q 003822 692 LNGRDYIVSGSCDEHVVRICCAQTGRRLRD-------------ISLEGKGSGTSM------FV-----QSLRGDPFRDFN 747 (793)
Q Consensus 692 pdg~~~L~Sgs~Dg~II~IWDv~tg~~l~~-------------~~L~gh~~~~s~------~v-----~sl~g~~~~~h~ 747 (793)
|+|. +|++|+.||+| ++||+..+ .+.. ..+.-...+... .+ +......+.+|.
T Consensus 407 p~g~-~l~Sgs~Dgtv-~lwd~~~~-~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~ 483 (524)
T 2j04_B 407 RLHP-MVLAGSADGSL-IITNAARR-LLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHG 483 (524)
T ss_dssp SSCC-BCEEEETTTEE-ECCBSCSS-TTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CC
T ss_pred CCCC-eEEEEECCCEE-EEEechHh-hccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCC
Confidence 9998 99999999999 99997543 1110 011111111000 00 011123456788
Q ss_pred ccEEEEEEcCCCC--ceeeEeeEEEeCCCcEEEEcCCCC
Q 003822 748 MSILAAYTRPSSK--SEIVKVNLLASTDHCDKECSHGQH 784 (793)
Q Consensus 748 ~~V~sva~~P~~~--~~iv~~~ltaS~Dg~VkvW~~~~~ 784 (793)
..|.+|+|+|+.. ..++ +|+.||.||||+++..
T Consensus 484 ~~V~~Vafsp~~~~~~~lA----sg~~~g~vrlw~l~~~ 518 (524)
T 2j04_B 484 INITCTKWNETSAGGKCYA----FSNSAGLLTLEYLSLE 518 (524)
T ss_dssp CSCCCEEECCSTTTTTEEE----EECTTSEEEEEECSCC
T ss_pred ceEEEEECCCCCCccHHHH----hhccCceEEEEEcccc
Confidence 9999999999853 3555 7888999999997643
No 45
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=5.6e-30 Score=296.93 Aligned_cols=273 Identities=22% Similarity=0.291 Sum_probs=231.2
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcc
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSI 535 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~ 535 (793)
|++++|+| ++..+++++.|+.|++|+.. ++....+. +|...|.+++|+ +++..+++++.||+|++||......
T Consensus 265 v~~v~~~~-d~~~l~~~~~d~~i~~w~~~-~~~~~~~~--~h~~~v~~~~~~-~~~~~l~t~~~d~~i~~w~~~~~~~-- 337 (577)
T 2ymu_A 265 VNGVAFRP-DGQTIASASDDKTVKLWNRN-GQLLQTLT--GHSSSVWGVAFS-PDGQTIASASDDKTVKLWNRNGQHL-- 337 (577)
T ss_dssp EEEEEECT-TSSEEEEEETTSCEEEEETT-SCEEEEEC--CCSSCEEEEEEC-TTSSEEEEEETTSCEEEEETTSCEE--
T ss_pred EEEEEEcC-CCCEEEEEeCCCEEEEEeCC-CcEEEEEe--cCCCCeEEEEEC-CCCCEEEEEeCCCeEEEEeCCCCee--
Confidence 89999999 99999999999999999975 56666665 899999999997 7899999999999999999865322
Q ss_pred cccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeCC
Q 003822 536 RGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFD 615 (793)
Q Consensus 536 ~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~D 615 (793)
.....+...|.+++|+|++..+++++.|+.|++||. +++.+..+. +|...|++++|+|++ .+|++++.|
T Consensus 338 --------~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~-~~~~~v~~~~~s~dg-~~l~~~~~d 406 (577)
T 2ymu_A 338 --------QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT-GHSSSVRGVAFSPDG-QTIASASDD 406 (577)
T ss_dssp --------EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEE-CCSSCEEEEEECTTS-SCEEEEETT
T ss_pred --------EEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEec-CCCCCeEEEEECCCC-CEEEEEeCC
Confidence 112245578999999999999999999999999995 578888888 699999999999999 899999999
Q ss_pred CeEEEEECCCCCccceEEccCCCCeE-EEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCC
Q 003822 616 QDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNG 694 (793)
Q Consensus 616 g~IrIWDlrt~~~~~~~~l~~~~~~v-sv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg 694 (793)
+.|++||... .....+.+|...+ +++|+|++++|++++.|+.|++||. +++.+..+. .+...+..++|+|++
T Consensus 407 ~~v~~~~~~~---~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~---~~~~~v~~~~~spd~ 479 (577)
T 2ymu_A 407 KTVKLWNRNG---QLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLT---GHSSSVRGVAFSPDG 479 (577)
T ss_dssp SEEEEECTTC---CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEE---CCSSCEEEEEECTTS
T ss_pred CEEEEEeCCC---CEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEc---CCCCCEEEEEEcCCC
Confidence 9999999643 2344555666655 5999999999999999999999996 566666665 466788999999999
Q ss_pred CeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCCCCccceeeeccCCccccCCccEEEEEEcCCCCceeeEeeEEEeCCC
Q 003822 695 RDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKSEIVKVNLLASTDH 774 (793)
Q Consensus 695 ~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~~~~iv~~~ltaS~Dg 774 (793)
+ +|++++.|+.| ++||. +++.+. ++.+|. ..|.+++|+|++ ..++ +|+.||
T Consensus 480 ~-~las~~~d~~i-~iw~~-~~~~~~--~~~~h~-------------------~~v~~l~~s~dg-~~l~----s~~~dg 530 (577)
T 2ymu_A 480 Q-TIASASDDKTV-KLWNR-NGQLLQ--TLTGHS-------------------SSVRGVAFSPDG-QTIA----SASDDK 530 (577)
T ss_dssp C-EEEEEETTSEE-EEEET-TSCEEE--EEECCS-------------------SCEEEEEECTTS-SCEE----EEETTS
T ss_pred C-EEEEEeCCCEE-EEEcC-CCCEEE--EEeCCC-------------------CCEEEEEEcCCC-CEEE----EEECcC
Confidence 9 99999999999 99994 788887 666654 579999999964 4455 899999
Q ss_pred cEEEEcCC
Q 003822 775 CDKECSHG 782 (793)
Q Consensus 775 ~VkvW~~~ 782 (793)
.|++|+..
T Consensus 531 ~v~lwd~~ 538 (577)
T 2ymu_A 531 TVKLWNRN 538 (577)
T ss_dssp EEEEECTT
T ss_pred EEEEEeCC
Confidence 99999964
No 46
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=6.3e-32 Score=300.26 Aligned_cols=284 Identities=12% Similarity=0.145 Sum_probs=226.5
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcc
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSI 535 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~ 535 (793)
+++++|+| ++++|++|+.||.|++||+.+++....+. .| .+..+.+.++++++|++|+.||.|++||+.+++..
T Consensus 59 ~~~~~~s~-~g~~l~~~~~d~~v~i~d~~~~~~~~~~~--~~--~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~- 132 (420)
T 3vl1_A 59 GKGNTFEK-VGSHLYKARLDGHDFLFNTIIRDGSKMLK--RA--DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQR- 132 (420)
T ss_dssp CTTCEEEE-EETTEEEEEETTEEEEEECCSEETTTTSC--SC--CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEE-
T ss_pred ccceeeee-cCCeEEEEEcCCcEEEEEecccceeeEEe--cC--CceEEEEEecCCCEEEEEECCCCEEEEeCCCccee-
Confidence 45789999 89999999999999999998766543332 33 45555544589999999999999999999875431
Q ss_pred cccccCCceeE-ecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeC
Q 003822 536 RGMHYGAGTVT-FDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSF 614 (793)
Q Consensus 536 ~~~~~~~~~~~-~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~ 614 (793)
.. ..|...|.+++|+|++..+++++.|+.|++||+.+++.+..+. +|...|++++|+|++ .+|++|+.
T Consensus 133 ---------~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~-~h~~~v~~~~~~~~~-~~l~s~~~ 201 (420)
T 3vl1_A 133 ---------EIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLI-GHRATVTDIAIIDRG-RNVLSASL 201 (420)
T ss_dssp ---------EETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEE-CCSSCEEEEEEETTT-TEEEEEET
T ss_pred ---------eecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEc-CCCCcEEEEEEcCCC-CEEEEEcC
Confidence 12 2466889999999999999999999999999999999999998 699999999999998 89999999
Q ss_pred CCeEEEEECCCCCccceEEcc-CC-CCe---------------------EEEEEecCCCEEEEEeCCCeEEEEEcCCCcE
Q 003822 615 DQDVKLWDLRQKPIQPCYTAS-SS-KGN---------------------VMVCFSPDDHYLLVSAVDNEVRQLLAVDGRV 671 (793)
Q Consensus 615 Dg~IrIWDlrt~~~~~~~~l~-~~-~~~---------------------vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~ 671 (793)
||+|++||+++++....+... .+ ..+ .+++|+|+|++|++|+.||.|++||+.+++.
T Consensus 202 d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~ 281 (420)
T 3vl1_A 202 DGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQ 281 (420)
T ss_dssp TSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCE
T ss_pred CCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCce
Confidence 999999999987443333221 11 111 2255688999999999999999999999988
Q ss_pred EEEEeeecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcE-EEeeeecCCCCCccceeeeccCCccccCCccE
Q 003822 672 HLNFGITATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRR-LRDISLEGKGSGTSMFVQSLRGDPFRDFNMSI 750 (793)
Q Consensus 672 ~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~-l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V 750 (793)
...+. ..+...+..++|+|++..+|++|+.||.| ++||+.+++. +. .+.+|. ...|
T Consensus 282 ~~~~~--~~~~~~v~~~~~~~~~~~~l~~g~~dg~i-~vwd~~~~~~~~~--~~~~~~------------------~~~v 338 (420)
T 3vl1_A 282 TIQLP--SKFTCSCNSLTVDGNNANYIYAGYENGML-AQWDLRSPECPVG--EFLINE------------------GTPI 338 (420)
T ss_dssp EEEEC--CTTSSCEEEEEECSSCTTEEEEEETTSEE-EEEETTCTTSCSE--EEEEST------------------TSCE
T ss_pred eEEcc--cccCCCceeEEEeCCCCCEEEEEeCCCeE-EEEEcCCCcCchh--hhhccC------------------CCCc
Confidence 76664 24556799999999998799999999999 9999999864 55 444432 2468
Q ss_pred EEEEEcCCCCceeeEeeEEEeCCCcEEEEcCCCCC
Q 003822 751 LAAYTRPSSKSEIVKVNLLASTDHCDKECSHGQHS 785 (793)
Q Consensus 751 ~sva~~P~~~~~iv~~~ltaS~Dg~VkvW~~~~~~ 785 (793)
.++.+.+. ..++ +++.||+|++|+.....
T Consensus 339 ~~~~~~~~--~~l~----s~~~d~~v~iw~~~~~~ 367 (420)
T 3vl1_A 339 NNVYFAAG--ALFV----SSGFDTSIKLDIISDPE 367 (420)
T ss_dssp EEEEEETT--EEEE----EETTTEEEEEEEECCTT
T ss_pred eEEEeCCC--CEEE----EecCCccEEEEeccCCC
Confidence 88866653 3444 88999999999977643
No 47
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1.7e-30 Score=283.17 Aligned_cols=236 Identities=20% Similarity=0.256 Sum_probs=202.2
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCe----EEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCC
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENEN----IVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHM 531 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~----~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~ 531 (793)
|.+++|+| ++++|++|+.||.|++|++.+++ ....+. +|.+.|.++.|+ ++ ..+++++.|++|++||++++
T Consensus 100 v~~~~~s~-~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~--~h~~~v~~~~~~-~~-~~l~s~s~d~~i~~wd~~~~ 174 (340)
T 1got_B 100 VMTCAYAP-SGNYVACGGLDNICSIYNLKTREGNVRVSRELA--GHTGYLSCCRFL-DD-NQIVTSSGDTTCALWDIETG 174 (340)
T ss_dssp EEEEEECT-TSSEEEEEETTCEEEEEETTTCSBSCEEEEEEE--CCSSCEEEEEEE-ET-TEEEEEETTSCEEEEETTTT
T ss_pred EEEEEECC-CCCEEEEEeCCCeEEEEECccCCCcceeEEEec--CCCccEEEEEEC-CC-CcEEEEECCCcEEEEECCCC
Confidence 89999999 89999999999999999998753 344444 899999999997 34 46999999999999999886
Q ss_pred CCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEE
Q 003822 532 PPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFAT 611 (793)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaT 611 (793)
+... ....|...|.+++|+|++..+++++.|++|++||+++++++..+. +|...|++++|+|++ .+|++
T Consensus 175 ~~~~---------~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~-~h~~~v~~v~~~p~~-~~l~s 243 (340)
T 1got_B 175 QQTT---------TFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFT-GHESDINAICFFPNG-NAFAT 243 (340)
T ss_dssp EEEE---------EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEEC-CCSSCEEEEEECTTS-SEEEE
T ss_pred cEEE---------EEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEc-CCcCCEEEEEEcCCC-CEEEE
Confidence 5311 112355789999999999999999999999999999999999998 699999999999999 89999
Q ss_pred EeCCCeEEEEECCCCCccceEEccCCC-CeEEEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEE
Q 003822 612 SSFDQDVKLWDLRQKPIQPCYTASSSK-GNVMVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSY 690 (793)
Q Consensus 612 gs~Dg~IrIWDlrt~~~~~~~~l~~~~-~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~af 690 (793)
|+.||+|++||++++.....+....+. .+.+++|+|+|++|++|+.|+.|++||+.+++.+..+. .|...+..++|
T Consensus 244 ~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~---~h~~~v~~~~~ 320 (340)
T 1got_B 244 GSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLA---GHDNRVSCLGV 320 (340)
T ss_dssp EETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE---CCSSCEEEEEE
T ss_pred EcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEee---cCCCcEEEEEE
Confidence 999999999999987433333222222 45579999999999999999999999999999887775 46678999999
Q ss_pred eeCCCeEEEEEeCCCcEEEEEE
Q 003822 691 YLNGRDYIVSGSCDEHVVRICC 712 (793)
Q Consensus 691 spdg~~~L~Sgs~Dg~II~IWD 712 (793)
+|+|. +|++|+.||.| +|||
T Consensus 321 s~dg~-~l~s~s~D~~i-~iWd 340 (340)
T 1got_B 321 TDDGM-AVATGSWDSFL-KIWN 340 (340)
T ss_dssp CTTSS-CEEEEETTSCE-EEEC
T ss_pred cCCCC-EEEEEcCCccE-EecC
Confidence 99998 99999999999 9996
No 48
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=1.5e-30 Score=286.17 Aligned_cols=291 Identities=21% Similarity=0.242 Sum_probs=227.2
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEec-----------cCCCCCEEEEEEeeCCCCEEEEEEcCCcEE
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPS-----------FGAMNSVLGLCWLKKYPSKLIAGSDNGSLK 524 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~-----------~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~ 524 (793)
|++++|+|.++++|++|+.||.|++||+.+++....+.. .+|...|.+++|+|.++.+|++++.||.|+
T Consensus 46 v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~ 125 (408)
T 4a11_B 46 INTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLK 125 (408)
T ss_dssp EEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEE
T ss_pred EEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEE
Confidence 999999997889999999999999999987754332221 258999999999855888999999999999
Q ss_pred EEEcCCCCCcccccccCCceeEecCCCCeEEEEEccCCC---EEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEE
Q 003822 525 LYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDE---LFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKF 601 (793)
Q Consensus 525 vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~---~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~f 601 (793)
+||+.+++. ...+.+...+.++.+.+.+. .+++++.||.|++||+++++.+..+. +|...|++++|
T Consensus 126 iwd~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~v~~~~~ 194 (408)
T 4a11_B 126 VWDTNTLQT----------ADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQ-GHRQEILAVSW 194 (408)
T ss_dssp EEETTTTEE----------EEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEEC-CCCSCEEEEEE
T ss_pred EeeCCCCcc----------ceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeec-CCCCcEEEEEE
Confidence 999998653 22344567789999988544 88888899999999999999999998 69999999999
Q ss_pred cCCCCcEEEEEeCCCeEEEEECCCCCccceEEc---------------cCCCC-eEEEEEecCCCEEEEEeCCCeEEEEE
Q 003822 602 SNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTA---------------SSSKG-NVMVCFSPDDHYLLVSAVDNEVRQLL 665 (793)
Q Consensus 602 spdg~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l---------------~~~~~-~vsv~fSpdg~~Lasgs~Dg~I~IwD 665 (793)
+|++..++++|+.||.|++||+++... ....+ ..|.. +.+++|+|+|++|++++.||.|++||
T Consensus 195 ~~~~~~ll~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd 273 (408)
T 4a11_B 195 SPRYDYILATASADSRVKLWDVRRASG-CLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWN 273 (408)
T ss_dssp CSSCTTEEEEEETTSCEEEEETTCSSC-CSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred CCCCCcEEEEEcCCCcEEEEECCCCCc-ccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEE
Confidence 999955799999999999999987642 12222 33444 44699999999999999999999999
Q ss_pred cCCCcEEEEEeeec-CCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCCCCccceeeeccCCccc
Q 003822 666 AVDGRVHLNFGITA-TGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPFR 744 (793)
Q Consensus 666 l~tg~~~~~l~~~~-~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~ 744 (793)
+.+++....+.... ..........+.......+++++.|+.+ ++||+.+++.+. .+.+|.
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~v~d~~~~~~~~--~~~~~~---------------- 334 (408)
T 4a11_B 274 SSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTI-AVYTVYSGEQIT--MLKGHY---------------- 334 (408)
T ss_dssp TTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEE-EEEETTTCCEEE--EECCCS----------------
T ss_pred CCCCccceeccccccccccccceeEEecCCCceEEEEecCCEE-EEEECcCCccee--eeccCC----------------
Confidence 99987644332111 0111112223333323367778889999 999999999998 666654
Q ss_pred cCCccEEEEEEcCCCCceeeEeeEEEeCCCcEEEEcCCCCC
Q 003822 745 DFNMSILAAYTRPSSKSEIVKVNLLASTDHCDKECSHGQHS 785 (793)
Q Consensus 745 ~h~~~V~sva~~P~~~~~iv~~~ltaS~Dg~VkvW~~~~~~ 785 (793)
..|.+++|+|+ ...++ +|+.||.|++|+.....
T Consensus 335 ---~~v~~~~~s~~-~~~l~----s~~~dg~i~iw~~~~~~ 367 (408)
T 4a11_B 335 ---KTVDCCVFQSN-FQELY----SGSRDCNILAWVPSLYE 367 (408)
T ss_dssp ---SCEEEEEEETT-TTEEE----EEETTSCEEEEEECC--
T ss_pred ---CeEEEEEEcCC-CCEEE----EECCCCeEEEEeCCCCC
Confidence 57999999996 45556 89999999999987664
No 49
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=1.7e-30 Score=289.08 Aligned_cols=242 Identities=21% Similarity=0.279 Sum_probs=205.4
Q ss_pred ceEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCc
Q 003822 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS 534 (793)
Q Consensus 455 ~V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~ 534 (793)
.|++++|+| ++++|++|+.||+|+|||+.+++.+..+. +|...|.+++|+ +++++|++|+.|++|++||+++++.
T Consensus 125 ~v~~v~~s~-dg~~l~s~~~d~~i~iwd~~~~~~~~~~~--~h~~~v~~~~~~-p~~~~l~s~s~d~~v~iwd~~~~~~- 199 (393)
T 1erj_A 125 YIRSVCFSP-DGKFLATGAEDRLIRIWDIENRKIVMILQ--GHEQDIYSLDYF-PSGDKLVSGSGDRTVRIWDLRTGQC- 199 (393)
T ss_dssp BEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEEC--CCSSCEEEEEEC-TTSSEEEEEETTSEEEEEETTTTEE-
T ss_pred eEEEEEECC-CCCEEEEEcCCCeEEEEECCCCcEEEEEc--cCCCCEEEEEEc-CCCCEEEEecCCCcEEEEECCCCee-
Confidence 489999999 99999999999999999999999888776 899999999998 7899999999999999999988654
Q ss_pred ccccccCCceeEecCCCCeEEEEEcc-CCCEEEEEECCCcEEEEECCCCcEEEEEc------ccCCCCeEEEEEcCCCCc
Q 003822 535 IRGMHYGAGTVTFDEFDQLTSVHVNS-MDELFLASGYSKNIALYDINSGRRLQVFA------DMHKEHINVVKFSNHSPS 607 (793)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~V~sv~~s~-~~~~lla~g~Dg~I~IWDl~tg~~l~~~~------~gh~~~V~sv~fspdg~~ 607 (793)
...+.+...+.+++++| ++..+++++.|+.|++||+++++.+..+. .+|...|++++|+|++ .
T Consensus 200 ---------~~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g-~ 269 (393)
T 1erj_A 200 ---------SLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDG-Q 269 (393)
T ss_dssp ---------EEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTS-S
T ss_pred ---------EEEEEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCC-C
Confidence 22344567799999998 66788888899999999999999887772 2699999999999999 8
Q ss_pred EEEEEeCCCeEEEEECCCCCc----------cceEEccCCCCeE-EEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEe
Q 003822 608 IFATSSFDQDVKLWDLRQKPI----------QPCYTASSSKGNV-MVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFG 676 (793)
Q Consensus 608 ~LaTgs~Dg~IrIWDlrt~~~----------~~~~~l~~~~~~v-sv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~ 676 (793)
+|++|+.||+|++||+++... .....+.+|...+ +++|+|++++|++|+.|+.|++||..+++.+..+.
T Consensus 270 ~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~ 349 (393)
T 1erj_A 270 SVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQ 349 (393)
T ss_dssp EEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred EEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEC
Confidence 999999999999999986421 2234455666555 69999999999999999999999999999888775
Q ss_pred eecCCCCCcEEEEEee------CCCeEEEEEeCCCcEEEEEEcCCC
Q 003822 677 ITATGSSQNYTRSYYL------NGRDYIVSGSCDEHVVRICCAQTG 716 (793)
Q Consensus 677 ~~~~~~~~v~s~afsp------dg~~~L~Sgs~Dg~II~IWDv~tg 716 (793)
.|...+..++|++ ++. +|++|+.||+| +||++...
T Consensus 350 ---~h~~~v~~v~~~~~~~~~p~~~-~l~sgs~Dg~i-~iW~~~~~ 390 (393)
T 1erj_A 350 ---GHRNSVISVAVANGSSLGPEYN-VFATGSGDCKA-RIWKYKKI 390 (393)
T ss_dssp ---CCSSCEEEEEECSSCTTCTTCE-EEEEEETTSEE-EEEEEEEC
T ss_pred ---CCCCCEEEEEecCCcCcCCCCC-EEEEECCCCcE-EECccccc
Confidence 4667788999886 455 99999999999 99998643
No 50
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=4.6e-30 Score=310.15 Aligned_cols=284 Identities=18% Similarity=0.223 Sum_probs=242.5
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcc
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSI 535 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~ 535 (793)
|++++|+| ++.+|++|+.||.|+|||+.+++.+..+. +|...|.+++|+ +++++|++|+.||.|++||+.+++...
T Consensus 16 v~~i~~sp-~~~~la~~~~~g~v~iwd~~~~~~~~~~~--~~~~~v~~~~~s-~~~~~l~~~~~dg~i~vw~~~~~~~~~ 91 (814)
T 3mkq_A 16 VKGIDFHP-TEPWVLTTLYSGRVEIWNYETQVEVRSIQ--VTETPVRAGKFI-ARKNWIIVGSDDFRIRVFNYNTGEKVV 91 (814)
T ss_dssp EEEEEECS-SSSEEEEEETTSEEEEEETTTTEEEEEEE--CCSSCEEEEEEE-GGGTEEEEEETTSEEEEEETTTCCEEE
T ss_pred eEEEEECC-CCCEEEEEeCCCEEEEEECCCCceEEEEe--cCCCcEEEEEEe-CCCCEEEEEeCCCeEEEEECCCCcEEE
Confidence 99999999 99999999999999999999999988887 899999999998 789999999999999999999865421
Q ss_pred cccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCC-cEEEEEcccCCCCeEEEEEcC-CCCcEEEEEe
Q 003822 536 RGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSG-RRLQVFADMHKEHINVVKFSN-HSPSIFATSS 613 (793)
Q Consensus 536 ~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg-~~l~~~~~gh~~~V~sv~fsp-dg~~~LaTgs 613 (793)
....|...|.+++|+|++..+++++.||.|++||+.++ .....+. +|...|.+++|+| ++ ..+++++
T Consensus 92 ---------~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~-~~~~~v~~~~~~p~~~-~~l~~~~ 160 (814)
T 3mkq_A 92 ---------DFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFE-GHEHFVMCVAFNPKDP-STFASGC 160 (814)
T ss_dssp ---------EEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEE-CCSSCEEEEEEETTEE-EEEEEEE
T ss_pred ---------EEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEc-CCCCcEEEEEEEcCCC-CEEEEEe
Confidence 12236678999999999999999999999999999987 6667777 6999999999999 56 8999999
Q ss_pred CCCeEEEEECCCCCccceEEccCCCCeEEEEEec--CCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEe
Q 003822 614 FDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSP--DDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYY 691 (793)
Q Consensus 614 ~Dg~IrIWDlrt~~~~~~~~l~~~~~~vsv~fSp--dg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afs 691 (793)
.||.|++||++++.............+..++|+| ++.++++++.||.|++||+.+++.+..+. .+...+..++|+
T Consensus 161 ~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~---~~~~~v~~~~~~ 237 (814)
T 3mkq_A 161 LDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLE---GHMSNVSFAVFH 237 (814)
T ss_dssp TTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEE---CCSSCEEEEEEC
T ss_pred CCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEc---CCCCCEEEEEEc
Confidence 9999999999887554444433335566799999 99999999999999999999999887775 356678999999
Q ss_pred eCCCeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCCCCccceeeeccCCccccCCccEEEEEEcCCCCceeeEeeEEEe
Q 003822 692 LNGRDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKSEIVKVNLLAS 771 (793)
Q Consensus 692 pdg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~~~~iv~~~ltaS 771 (793)
|++. ++++|+.||.| ++||+.+++.+. .+..|. ..|.+++|+|++...++ .++
T Consensus 238 ~~~~-~l~~~~~dg~v-~vwd~~~~~~~~--~~~~~~-------------------~~v~~~~~~~~~~~~~~----~~~ 290 (814)
T 3mkq_A 238 PTLP-IIISGSEDGTL-KIWNSSTYKVEK--TLNVGL-------------------ERSWCIATHPTGRKNYI----ASG 290 (814)
T ss_dssp SSSS-EEEEEETTSCE-EEEETTTCSEEE--EECCSS-------------------SSEEEEEECTTCGGGEE----EEE
T ss_pred CCCC-EEEEEeCCCeE-EEEECCCCcEEE--EeecCC-------------------CcEEEEEEccCCCceEE----EEE
Confidence 9999 99999999999 999999999888 555443 47999999998665544 566
Q ss_pred CCCcEEEEcCCCC
Q 003822 772 TDHCDKECSHGQH 784 (793)
Q Consensus 772 ~Dg~VkvW~~~~~ 784 (793)
.|+.+.+|+....
T Consensus 291 ~~~~~~~~~~~~~ 303 (814)
T 3mkq_A 291 FDNGFTVLSLGND 303 (814)
T ss_dssp ETTEEEEEECSCC
T ss_pred eCCCEEEEEcCCC
Confidence 6777888886543
No 51
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=1.3e-30 Score=278.48 Aligned_cols=246 Identities=15% Similarity=0.160 Sum_probs=198.1
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCC--eEEEEEeccCCCCCEEEEEEeeC-CCCEEEEEEcCCcEEEEEcCCCC
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENE--NIVSYIPSFGAMNSVLGLCWLKK-YPSKLIAGSDNGSLKLYDIRHMP 532 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~--~~i~~l~~~~h~~~V~sv~fs~~-~g~~Lasgs~DgtV~vWDl~~~~ 532 (793)
|++++|+| ++++||+|+.||+|+|||+.++ +.+..+. +|.+.|.+++|+++ ++++|++|+.||+|++||+++++
T Consensus 12 V~~~~~s~-~g~~las~s~D~~v~iw~~~~~~~~~~~~l~--gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~ 88 (297)
T 2pm7_B 12 IHDAVMDY-YGKRMATCSSDKTIKIFEVEGETHKLIDTLT--GHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGR 88 (297)
T ss_dssp EEEEEECT-TSSEEEEEETTSCEEEEEBCSSCBCCCEEEC--CCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSC
T ss_pred eEEEEECC-CCCEEEEEeCCCEEEEEecCCCCcEEEEEEc--cccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCc
Confidence 99999999 9999999999999999999753 4555665 89999999999754 48899999999999999998764
Q ss_pred CcccccccCCceeEecCCCCeEEEEEccC--CCEEEEEECCCcEEEEECCCCc--EEEEEcccCCCCeEEEEEcCCC---
Q 003822 533 PSIRGMHYGAGTVTFDEFDQLTSVHVNSM--DELFLASGYSKNIALYDINSGR--RLQVFADMHKEHINVVKFSNHS--- 605 (793)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~~V~sv~~s~~--~~~lla~g~Dg~I~IWDl~tg~--~l~~~~~gh~~~V~sv~fspdg--- 605 (793)
.... .....|...|.+++|+|+ +..+++++.|++|++||++++. ....+. +|...|++++|+|++
T Consensus 89 ~~~~-------~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~-~h~~~v~~~~~~p~~~~~ 160 (297)
T 2pm7_B 89 WSQI-------AVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIID-AHAIGVNSASWAPATIEE 160 (297)
T ss_dssp BCCC-------EEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEE-CCSSCEEEEEECCCC---
T ss_pred eEEE-------EEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeee-cccCccceEeecCCcccc
Confidence 2110 111235578999999987 6789999999999999998763 234555 699999999999973
Q ss_pred ---------CcEEEEEeCCCeEEEEECCCCCc--cceEEccCCCCeE-EEEEecCC---CEEEEEeCCCeEEEEEcCCCc
Q 003822 606 ---------PSIFATSSFDQDVKLWDLRQKPI--QPCYTASSSKGNV-MVCFSPDD---HYLLVSAVDNEVRQLLAVDGR 670 (793)
Q Consensus 606 ---------~~~LaTgs~Dg~IrIWDlrt~~~--~~~~~l~~~~~~v-sv~fSpdg---~~Lasgs~Dg~I~IwDl~tg~ 670 (793)
+.+|++|+.|++|++||++++.. .....+.+|...+ +++|+|++ .+|++++.|++|++||+.++.
T Consensus 161 ~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~ 240 (297)
T 2pm7_B 161 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQ 240 (297)
T ss_dssp ---------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTT
T ss_pred cccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCC
Confidence 26999999999999999987642 1345677777766 59999985 899999999999999998753
Q ss_pred --EEEEEeeecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcC
Q 003822 671 --VHLNFGITATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQ 714 (793)
Q Consensus 671 --~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~ 714 (793)
..........+...+..++|+|+|. +|++|+.|+.| ++|+..
T Consensus 241 ~~~~~~~~~~~~~~~~v~~~~~s~~g~-~las~~~D~~v-~lw~~~ 284 (297)
T 2pm7_B 241 GPWKKTLLKEEKFPDVLWRASWSLSGN-VLALSGGDNKV-TLWKEN 284 (297)
T ss_dssp SCCEEEESSSSCCSSCEEEEEECSSSC-CEEEEETTSCE-EEEEEC
T ss_pred CccceeeeecccCCCcEEEEEECCCCC-EEEEEcCCCcE-EEEEEC
Confidence 1111211123456789999999999 99999999999 999976
No 52
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.4e-30 Score=285.90 Aligned_cols=281 Identities=16% Similarity=0.207 Sum_probs=229.2
Q ss_pred ceEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCc
Q 003822 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS 534 (793)
Q Consensus 455 ~V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~ 534 (793)
++.+++|++ ..+++++.||.|++||+.+++....+.. .|...|.+++|+ +++++|++|+.||.|++||+.+++..
T Consensus 95 ~~~~~~~s~---~~l~~~~~d~~v~lw~~~~~~~~~~~~~-~~~~~v~~v~~s-~~~~~l~~~~~dg~i~iwd~~~~~~~ 169 (401)
T 4aez_A 95 YLNLLDWSN---LNVVAVALERNVYVWNADSGSVSALAET-DESTYVASVKWS-HDGSFLSVGLGNGLVDIYDVESQTKL 169 (401)
T ss_dssp TCBCEEECT---TSEEEEEETTEEEEEETTTCCEEEEEEC-CTTCCEEEEEEC-TTSSEEEEEETTSCEEEEETTTCCEE
T ss_pred eEEEEeecC---CCEEEEECCCeEEEeeCCCCcEeEeeec-CCCCCEEEEEEC-CCCCEEEEECCCCeEEEEECcCCeEE
Confidence 367788887 4577888999999999999998877764 488999999998 68999999999999999999886542
Q ss_pred ccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECC-CCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEe
Q 003822 535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDIN-SGRRLQVFADMHKEHINVVKFSNHSPSIFATSS 613 (793)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~-tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs 613 (793)
. ....|...|.+++| ++..+++++.||.|++||++ .+..+..+. +|.+.|.+++|+|++ .+|++|+
T Consensus 170 ~---------~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~-~~l~s~~ 236 (401)
T 4aez_A 170 R---------TMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQ-GHSSEVCGLAWRSDG-LQLASGG 236 (401)
T ss_dssp E---------EECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEE-CCSSCEEEEEECTTS-SEEEEEE
T ss_pred E---------EecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEEc-CCCCCeeEEEEcCCC-CEEEEEe
Confidence 1 11245678999999 46789999999999999999 466777887 699999999999998 8999999
Q ss_pred CCCeEEEEECCCCCccceEEccCCCCeE-EEEEecCCC-EEEEEe--CCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEE
Q 003822 614 FDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDH-YLLVSA--VDNEVRQLLAVDGRVHLNFGITATGSSQNYTRS 689 (793)
Q Consensus 614 ~Dg~IrIWDlrt~~~~~~~~l~~~~~~v-sv~fSpdg~-~Lasgs--~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~a 689 (793)
.||.|++||++++ .+...+..|...+ +++|+|++. .+++|+ .|+.|++||+.+++.+..+. +...+..++
T Consensus 237 ~d~~v~iwd~~~~--~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~----~~~~v~~~~ 310 (401)
T 4aez_A 237 NDNVVQIWDARSS--IPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD----AGSQVTSLI 310 (401)
T ss_dssp TTSCEEEEETTCS--SEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE----CSSCEEEEE
T ss_pred CCCeEEEccCCCC--CccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe----CCCcEEEEE
Confidence 9999999999987 4455555565554 699999775 555554 69999999999999988875 456799999
Q ss_pred EeeCCCeEEEE--EeCCCcEEEEEEcCCCcEEEeeeecCCCCCccceeeeccCCccccCCccEEEEEEcCCCCceeeEee
Q 003822 690 YYLNGRDYIVS--GSCDEHVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKSEIVKVN 767 (793)
Q Consensus 690 fspdg~~~L~S--gs~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~~~~iv~~~ 767 (793)
|+|++. ++++ |+.||.| ++||+.+++......+.+|. ..|.+++|+|+ ...++
T Consensus 311 ~s~~~~-~l~~~~g~~dg~i-~v~~~~~~~~~~~~~~~~h~-------------------~~v~~~~~s~d-g~~l~--- 365 (401)
T 4aez_A 311 WSPHSK-EIMSTHGFPDNNL-SIWSYSSSGLTKQVDIPAHD-------------------TRVLYSALSPD-GRILS--- 365 (401)
T ss_dssp ECSSSS-EEEEEECTTTCEE-EEEEEETTEEEEEEEEECCS-------------------SCCCEEEECTT-SSEEE---
T ss_pred ECCCCC-eEEEEeecCCCcE-EEEecCCccceeEEEecCCC-------------------CCEEEEEECCC-CCEEE---
Confidence 999999 7777 4489999 99999998777633444443 57999999996 44555
Q ss_pred EEEeCCCcEEEEcCCCCC
Q 003822 768 LLASTDHCDKECSHGQHS 785 (793)
Q Consensus 768 ltaS~Dg~VkvW~~~~~~ 785 (793)
+|+.||.|++|+.....
T Consensus 366 -s~~~dg~i~iw~~~~~~ 382 (401)
T 4aez_A 366 -TAASDENLKFWRVYDGD 382 (401)
T ss_dssp -EECTTSEEEEEECCC--
T ss_pred -EEeCCCcEEEEECCCCc
Confidence 89999999999987654
No 53
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.98 E-value=3.4e-30 Score=284.41 Aligned_cols=279 Identities=16% Similarity=0.210 Sum_probs=226.9
Q ss_pred eEEEEEeCCCCC-EEEEEeCCCeEEEEEC----CCCe------EEEEEec--c------CCCCCEEEEEEeeCCCCEEEE
Q 003822 456 PRQFEYHPSISC-LMVFGTLDGEIVVVNH----ENEN------IVSYIPS--F------GAMNSVLGLCWLKKYPSKLIA 516 (793)
Q Consensus 456 V~~vafsP~d~~-~Lasgs~DG~I~VWd~----~t~~------~i~~l~~--~------~h~~~V~sv~fs~~~g~~Las 516 (793)
|++++|+| ++. +||+|+.||.|++|++ .+++ ....+.. . +|.+.|.+++|+ +++++|++
T Consensus 48 v~~~~~s~-~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~ 125 (425)
T 1r5m_A 48 IVSSTWNP-LDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWS-HDGNSIVT 125 (425)
T ss_dssp CSEEEECS-SCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEEC-TTSSEEEE
T ss_pred eEEEEECC-CCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEc-CCCCEEEE
Confidence 89999999 788 9999999999999999 8887 3444432 1 267799999998 78999999
Q ss_pred EEcCCcEEEEEcCCCCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCC-
Q 003822 517 GSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEH- 595 (793)
Q Consensus 517 gs~DgtV~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~- 595 (793)
|+.||.|++||. ++.. . .....|...|.+++|+|++..+++++.||.|++||+.+++.+..+. .+...
T Consensus 126 ~~~dg~i~i~~~-~~~~-~--------~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~~ 194 (425)
T 1r5m_A 126 GVENGELRLWNK-TGAL-L--------NVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFE-LKETGG 194 (425)
T ss_dssp EETTSCEEEEET-TSCE-E--------EEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEEC-CC----
T ss_pred EeCCCeEEEEeC-CCCe-e--------eeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEee-ccccCc
Confidence 999999999993 3222 1 1122356789999999999999999999999999999999999888 46666
Q ss_pred --------------eEEEEEcCCCCcEEEEEeCCCeEEEEECCCCCccceEEccCCCCeE-EEEEecCCCEEEEEeCCCe
Q 003822 596 --------------INVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLVSAVDNE 660 (793)
Q Consensus 596 --------------V~sv~fspdg~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~~~~v-sv~fSpdg~~Lasgs~Dg~ 660 (793)
+.+++|+|++ .+++++.||.|++||++++.. ...+..|...+ +++|+|++++|++++.|+.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~i~~~d~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~ 270 (425)
T 1r5m_A 195 SSINAENHSGDGSLGVDVEWVDDD--KFVIPGPKGAIFVYQITEKTP--TGKLIGHHGPISVLEFNDTNKLLLSASDDGT 270 (425)
T ss_dssp -----------CCCBSCCEEEETT--EEEEECGGGCEEEEETTCSSC--SEEECCCSSCEEEEEEETTTTEEEEEETTSC
T ss_pred cceeeccccCCcceeeEEEEcCCC--EEEEEcCCCeEEEEEcCCCce--eeeeccCCCceEEEEECCCCCEEEEEcCCCE
Confidence 9999999976 688999999999999998743 44455555555 5999999999999999999
Q ss_pred EEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCCCCccceeeeccC
Q 003822 661 VRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLRG 740 (793)
Q Consensus 661 I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g 740 (793)
|++||+.+++....+. .+...+..++|+|++ ++++++.|+.+ ++||+.+++.+. .+.+|.
T Consensus 271 i~i~d~~~~~~~~~~~---~~~~~i~~~~~~~~~--~l~~~~~d~~i-~i~d~~~~~~~~--~~~~~~------------ 330 (425)
T 1r5m_A 271 LRIWHGGNGNSQNCFY---GHSQSIVSASWVGDD--KVISCSMDGSV-RLWSLKQNTLLA--LSIVDG------------ 330 (425)
T ss_dssp EEEECSSSBSCSEEEC---CCSSCEEEEEEETTT--EEEEEETTSEE-EEEETTTTEEEE--EEECTT------------
T ss_pred EEEEECCCCccceEec---CCCccEEEEEECCCC--EEEEEeCCCcE-EEEECCCCcEeE--ecccCC------------
Confidence 9999999998877774 456788999999998 89999999999 999999999888 555543
Q ss_pred CccccCCccEEEEEEcCCCCceeeEeeEEEeCCCcEEEEcCCC
Q 003822 741 DPFRDFNMSILAAYTRPSSKSEIVKVNLLASTDHCDKECSHGQ 783 (793)
Q Consensus 741 ~~~~~h~~~V~sva~~P~~~~~iv~~~ltaS~Dg~VkvW~~~~ 783 (793)
..|.+++|+|+ ...++ +++.||.|++|+...
T Consensus 331 -------~~i~~~~~s~~-~~~l~----~~~~dg~i~i~~~~~ 361 (425)
T 1r5m_A 331 -------VPIFAGRISQD-GQKYA----VAFMDGQVNVYDLKK 361 (425)
T ss_dssp -------CCEEEEEECTT-SSEEE----EEETTSCEEEEECHH
T ss_pred -------ccEEEEEEcCC-CCEEE----EEECCCeEEEEECCC
Confidence 47999999996 45555 899999999999754
No 54
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.98 E-value=6.4e-30 Score=273.50 Aligned_cols=284 Identities=13% Similarity=0.136 Sum_probs=230.9
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcc
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSI 535 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~ 535 (793)
|.+++|+| ++++++++..++.+.+|........... .+|...|.+++|+ ++++++++++ ||.|++||+.++....
T Consensus 12 v~~~~~s~-dg~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~~~~~-~~~~~l~~~~-dg~i~iw~~~~~~~~~ 86 (337)
T 1gxr_A 12 AYSFHVTA-DGQMQPVPFPPDALIGPGIPRHARQINT--LNHGEVVCAVTIS-NPTRHVYTGG-KGCVKVWDISHPGNKS 86 (337)
T ss_dssp CCEEEECS-SSCEEECCCCTTSSSSTTCCSEEEEEEE--ECCSSCCCEEEEC-SSSSEEEEEC-BSEEEEEETTSTTCCS
T ss_pred eeEEEECC-CCCEEEeecCCCcEeccccCCcccccee--ccCCCceEEEEEe-cCCcEEEEcC-CCeEEEEECCCCCcee
Confidence 78999999 9999999988887777765543333222 2799999999998 7899999998 9999999998765321
Q ss_pred cccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCc--EEEEEcccCCCCeEEEEEcCCCCcEEEEEe
Q 003822 536 RGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGR--RLQVFADMHKEHINVVKFSNHSPSIFATSS 613 (793)
Q Consensus 536 ~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~--~l~~~~~gh~~~V~sv~fspdg~~~LaTgs 613 (793)
.... .....+...|.+++|+|++..+++++.||.|++||+.+++ ....+. +|...|.+++|+|++ .++++++
T Consensus 87 ~~~~----~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~-~~~~~i~~~~~~~~~-~~l~~~~ 160 (337)
T 1gxr_A 87 PVSQ----LDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELT-SSAPACYALAISPDS-KVCFSCC 160 (337)
T ss_dssp CSEE----EECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEE-CSSSCEEEEEECTTS-SEEEEEE
T ss_pred eeec----ccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecc-cCCCceEEEEECCCC-CEEEEEe
Confidence 1100 0111466789999999999999999999999999999887 556666 699999999999998 8999999
Q ss_pred CCCeEEEEECCCCCccceEEccCCCCeE-EEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEee
Q 003822 614 FDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYL 692 (793)
Q Consensus 614 ~Dg~IrIWDlrt~~~~~~~~l~~~~~~v-sv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afsp 692 (793)
.||.|++||++++ .....+..|...+ +++|+|++++|++++.||.|++||+.+++.+..+. +...+..++|+|
T Consensus 161 ~dg~v~~~d~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~----~~~~v~~~~~s~ 234 (337)
T 1gxr_A 161 SDGNIAVWDLHNQ--TLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD----FTSQIFSLGYCP 234 (337)
T ss_dssp TTSCEEEEETTTT--EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE----CSSCEEEEEECT
T ss_pred CCCcEEEEeCCCC--ceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeec----CCCceEEEEECC
Confidence 9999999999987 4455556665555 59999999999999999999999999999877764 456789999999
Q ss_pred CCCeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCCCCccceeeeccCCccccCCccEEEEEEcCCCCceeeEeeEEEeC
Q 003822 693 NGRDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKSEIVKVNLLAST 772 (793)
Q Consensus 693 dg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~~~~iv~~~ltaS~ 772 (793)
++. ++++++.|+.+ ++||+.+++... +. .|...|.+++|+|++ ..++ +++.
T Consensus 235 ~~~-~l~~~~~~~~i-~~~~~~~~~~~~---~~-------------------~~~~~v~~~~~~~~~-~~l~----~~~~ 285 (337)
T 1gxr_A 235 TGE-WLAVGMESSNV-EVLHVNKPDKYQ---LH-------------------LHESCVLSLKFAYCG-KWFV----STGK 285 (337)
T ss_dssp TSS-EEEEEETTSCE-EEEETTSSCEEE---EC-------------------CCSSCEEEEEECTTS-SEEE----EEET
T ss_pred CCC-EEEEEcCCCcE-EEEECCCCCeEE---Ec-------------------CCccceeEEEECCCC-CEEE----EecC
Confidence 998 99999999999 999999887543 33 344679999999964 4555 8999
Q ss_pred CCcEEEEcCCCCC
Q 003822 773 DHCDKECSHGQHS 785 (793)
Q Consensus 773 Dg~VkvW~~~~~~ 785 (793)
||.|++|+.....
T Consensus 286 dg~i~~~~~~~~~ 298 (337)
T 1gxr_A 286 DNLLNAWRTPYGA 298 (337)
T ss_dssp TSEEEEEETTTCC
T ss_pred CCcEEEEECCCCe
Confidence 9999999987653
No 55
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=99.97 E-value=7.5e-30 Score=278.79 Aligned_cols=254 Identities=14% Similarity=0.157 Sum_probs=199.7
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcc
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSI 535 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~ 535 (793)
|++++|+| ++++|++|+.|++|++|+..++.........+|...|.+++|+ +++++|++|+.|++|++||+.++....
T Consensus 64 v~~~~~sp-~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~s-p~~~~l~s~s~D~~v~iwd~~~~~~~~ 141 (345)
T 3fm0_A 64 VRKVAWSP-CGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWA-PSGNLLATCSRDKSVWVWEVDEEDEYE 141 (345)
T ss_dssp EEEEEECT-TSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEEC-TTSSEEEEEETTSCEEEEEECTTSCEE
T ss_pred EEEEEECC-CCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEe-CCCCEEEEEECCCeEEEEECCCCCCeE
Confidence 99999999 9999999999999999999877543333334899999999998 789999999999999999998754311
Q ss_pred cccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCc--EEEEEcccCCCCeEEEEEcCCCCcEEEEEe
Q 003822 536 RGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGR--RLQVFADMHKEHINVVKFSNHSPSIFATSS 613 (793)
Q Consensus 536 ~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~--~l~~~~~gh~~~V~sv~fspdg~~~LaTgs 613 (793)
. ......|...|.+++|+|++..+++++.|++|++||+++++ +..++. +|...|++++|+|++ .+|++|+
T Consensus 142 ~------~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~-~h~~~v~~l~~sp~g-~~l~s~s 213 (345)
T 3fm0_A 142 C------VSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLE-GHESTVWSLAFDPSG-QRLASCS 213 (345)
T ss_dssp E------EEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEEC-CCSSCEEEEEECTTS-SEEEEEE
T ss_pred E------EEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEec-CCCCceEEEEECCCC-CEEEEEe
Confidence 0 01122456789999999999999999999999999999875 446777 799999999999999 8999999
Q ss_pred CCCeEEEEECCCCCc-------------cceEEccC-CCC-eEEEEEecCCCEEEEEeCCCeEEEEEcCCCc----EEE-
Q 003822 614 FDQDVKLWDLRQKPI-------------QPCYTASS-SKG-NVMVCFSPDDHYLLVSAVDNEVRQLLAVDGR----VHL- 673 (793)
Q Consensus 614 ~Dg~IrIWDlrt~~~-------------~~~~~l~~-~~~-~vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~----~~~- 673 (793)
.|++|++||...... ..+..+.+ |.. +..++|+|++..|++++.|+.|++|+...+. ...
T Consensus 214 ~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~ 293 (345)
T 3fm0_A 214 DDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFS 293 (345)
T ss_dssp TTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEE
T ss_pred CCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEE
Confidence 999999999743211 11222322 443 4469999999999999999999999987642 111
Q ss_pred -EEeeecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEE
Q 003822 674 -NFGITATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRLR 720 (793)
Q Consensus 674 -~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~ 720 (793)
.......|...+..++|+|++..+|++|+.||+| ++|++.+++.+.
T Consensus 294 ~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v-~~W~~~~~~~~~ 340 (345)
T 3fm0_A 294 LTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEV-AFWKYQRPEGLH 340 (345)
T ss_dssp EEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCE-EEEEECC-----
T ss_pred EEeeecccccCcEeEeEEeCCCceEEEEcCCCCcE-EEEEecCCCCcc
Confidence 1222335677899999999985599999999999 999999988765
No 56
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.97 E-value=8e-30 Score=272.11 Aligned_cols=257 Identities=15% Similarity=0.201 Sum_probs=208.8
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCC----eEEEEEeccCCCCCEEEEEEeeC-CCCEEEEEEcCCcEEEEEcCC
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENE----NIVSYIPSFGAMNSVLGLCWLKK-YPSKLIAGSDNGSLKLYDIRH 530 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~----~~i~~l~~~~h~~~V~sv~fs~~-~g~~Lasgs~DgtV~vWDl~~ 530 (793)
|++++|+| ++++|++|+.||.|++||+.++ +....+. +|...|.+++|++. ++++|++|+.||+|++||+++
T Consensus 14 v~~~~~~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~ 90 (351)
T 3f3f_A 14 VHDVVYDF-YGRHVATCSSDQHIKVFKLDKDTSNWELSDSWR--AHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDP 90 (351)
T ss_dssp EEEEEECS-SSSEEEEEETTSEEEEEEECSSSCCEEEEEEEE--CCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECT
T ss_pred eeEEEEcC-CCCEEEEeeCCCeEEEEECCCCCCcceecceec--cCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCC
Confidence 99999999 9999999999999999999876 3444554 89999999999854 589999999999999999988
Q ss_pred CCCcccccccCCceeEecCCCCeEEEEEccC--CCEEEEEECCCcEEEEECCCCcEEEEEc------------ccCCCCe
Q 003822 531 MPPSIRGMHYGAGTVTFDEFDQLTSVHVNSM--DELFLASGYSKNIALYDINSGRRLQVFA------------DMHKEHI 596 (793)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~--~~~lla~g~Dg~I~IWDl~tg~~l~~~~------------~gh~~~V 596 (793)
+.................|...|.+++|+|+ +..+++++.||.|++||+++++.+..+. .+|...+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (351)
T 3f3f_A 91 DQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSD 170 (351)
T ss_dssp TSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCC
T ss_pred CcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccce
Confidence 6532111000001112246688999999998 8899999999999999999876543322 1588899
Q ss_pred EEEEEcCC--CCcEEEEEeCCCeEEEEECCCCCccceEEccCCCCeE-EEEEecCC----CEEEEEeCCCeEEEEEcCCC
Q 003822 597 NVVKFSNH--SPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDD----HYLLVSAVDNEVRQLLAVDG 669 (793)
Q Consensus 597 ~sv~fspd--g~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~~~~v-sv~fSpdg----~~Lasgs~Dg~I~IwDl~tg 669 (793)
.+++|+|+ .+.++++++.|+.+.+|+...+.......+.+|...+ +++|+|++ ++|++|+.||.|++||+.++
T Consensus 171 ~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~ 250 (351)
T 3f3f_A 171 FCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEK 250 (351)
T ss_dssp EEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEEC
T ss_pred eEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCC
Confidence 99999997 2389999999999999988887666677777777666 59999998 89999999999999999875
Q ss_pred ----------------------------------------------cEEEEEeeecCCCCCcEEEEEeeCCCeEEEEEeC
Q 003822 670 ----------------------------------------------RVHLNFGITATGSSQNYTRSYYLNGRDYIVSGSC 703 (793)
Q Consensus 670 ----------------------------------------------~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~ 703 (793)
+.+..+ ..+...+..++|+|+++ +|++|+.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~h~~~v~~~~~s~~~~-~l~s~~~ 326 (351)
T 3f3f_A 251 LSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEH---DDHNGEVWSVSWNLTGT-ILSSAGD 326 (351)
T ss_dssp C---------------------------------------CCSEEEEEEEEE---CTTSSCEEEEEECSSSC-CEEEEET
T ss_pred cCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEE---ecccccEEEEEEcCCCC-EEEEecC
Confidence 233333 35667899999999998 9999999
Q ss_pred CCcEEEEEEcCCCcEEE
Q 003822 704 DEHVVRICCAQTGRRLR 720 (793)
Q Consensus 704 Dg~II~IWDv~tg~~l~ 720 (793)
||.| ++||+.+++.+.
T Consensus 327 dg~v-~iw~~~~~~~~~ 342 (351)
T 3f3f_A 327 DGKV-RLWKATYSNEFK 342 (351)
T ss_dssp TSCE-EEEEECTTSCEE
T ss_pred CCcE-EEEecCcCcchh
Confidence 9999 999999997766
No 57
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=99.97 E-value=1.8e-30 Score=285.61 Aligned_cols=245 Identities=13% Similarity=0.116 Sum_probs=192.9
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEE--EeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCC
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSY--IPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPP 533 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~--l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~ 533 (793)
|++++|+| ++ .+++++.||+|+|||+.+++.... +...+|...|.+++|+ +++++|++|+.||+|++||+++++.
T Consensus 97 V~~~~~s~-d~-~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~s-pdg~~l~sgs~dg~v~iwd~~~~~~ 173 (357)
T 4g56_B 97 VTDVAWVS-EK-GILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVF-SDGTQAVSGGKDFSVKVWDLSQKAV 173 (357)
T ss_dssp EEEEEEET-TT-EEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEEC-SSSSEEEEEETTSCEEEEETTTTEE
T ss_pred EEEEEEcC-CC-CEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEEC-CCCCEEEEEeCCCeEEEEECCCCcE
Confidence 89999999 66 466788899999999988765432 2334899999999998 7899999999999999999988654
Q ss_pred cccccccCCceeEecCCCCeEEEEEccCCC-EEEEEECCCcEEEEECCCCcEEEEEcc-cCCCCeEEEEEcCCCCcEEEE
Q 003822 534 SIRGMHYGAGTVTFDEFDQLTSVHVNSMDE-LFLASGYSKNIALYDINSGRRLQVFAD-MHKEHINVVKFSNHSPSIFAT 611 (793)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~-~lla~g~Dg~I~IWDl~tg~~l~~~~~-gh~~~V~sv~fspdg~~~LaT 611 (793)
.. ....|...|.+++|++++. .+++++.||.|++||+++++++..+.. .|...+++++|+|+++.+|++
T Consensus 174 ~~---------~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~ 244 (357)
T 4g56_B 174 LK---------SYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFAC 244 (357)
T ss_dssp EE---------EECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEE
T ss_pred EE---------EEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEE
Confidence 11 1123557899999998875 677888999999999999887766542 477889999999997789999
Q ss_pred EeCCCeEEEEECCCCCccceEEccCCCCeE-EEEEecCC-CEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEE
Q 003822 612 SSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDD-HYLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNYTRS 689 (793)
Q Consensus 612 gs~Dg~IrIWDlrt~~~~~~~~l~~~~~~v-sv~fSpdg-~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~a 689 (793)
|+.|+.|++||+++++ ....+.++...+ +++|+|++ ++|++|+.|++|+|||+.+++++..+ .|...+..++
T Consensus 245 g~~d~~i~~wd~~~~~--~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~----~H~~~V~~va 318 (357)
T 4g56_B 245 GDETGNVSLVNIKNPD--SAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL----SHRDFVTGVA 318 (357)
T ss_dssp EESSSCEEEEESSCGG--GCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC----CCSSCEEEEE
T ss_pred eecccceeEEECCCCc--EeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC----CCCCCEEEEE
Confidence 9999999999999874 455666666655 59999987 67999999999999999999886654 4677899999
Q ss_pred Eee-CCCeEEEEEeCCCcEEEEEEcCCCcEEE
Q 003822 690 YYL-NGRDYIVSGSCDEHVVRICCAQTGRRLR 720 (793)
Q Consensus 690 fsp-dg~~~L~Sgs~Dg~II~IWDv~tg~~l~ 720 (793)
|+| ++. +|+||+.||+| ++|++.+.....
T Consensus 319 fsP~d~~-~l~s~s~Dg~v-~iW~~~~~~~~~ 348 (357)
T 4g56_B 319 WSPLDHS-KFTTVGWDHKV-LHHHLPSEGRTE 348 (357)
T ss_dssp ECSSSTT-EEEEEETTSCE-EEEECC------
T ss_pred EeCCCCC-EEEEEcCCCeE-EEEECCCCCccc
Confidence 999 566 99999999999 999997654433
No 58
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=99.97 E-value=8.1e-30 Score=279.91 Aligned_cols=237 Identities=20% Similarity=0.272 Sum_probs=200.9
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCC------eEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcC
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENE------NIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIR 529 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~------~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~ 529 (793)
|.+++|+| ++..+++|+.|+.+++|++... .....+. +|...|.+++|+ +++..|++|+.|++|++||++
T Consensus 109 v~~~~~sp-~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~--~h~~~v~~~~~~-~~~~~l~t~s~D~~v~lwd~~ 184 (354)
T 2pbi_B 109 VMACAYAP-SGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVA--MHTNYLSACSFT-NSDMQILTASGDGTCALWDVE 184 (354)
T ss_dssp CCEEEECT-TSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEE--ECSSCEEEEEEC-SSSSEEEEEETTSEEEEEETT
T ss_pred EEEEEECC-CCCEEEEeeCCCCEEEEEEeccccccccccceeee--ccCCcEEEEEEe-CCCCEEEEEeCCCcEEEEeCC
Confidence 88999999 9999999999999999998643 1233343 799999999997 788899999999999999999
Q ss_pred CCCCcccccccCCceeEecCCCCeEEEEEccC--CCEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCc
Q 003822 530 HMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSM--DELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPS 607 (793)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~--~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~ 607 (793)
+++... ....|...|.+++++|. +..+++++.||+|++||+++++++..+. +|...|++++|+|++ .
T Consensus 185 ~~~~~~---------~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~-~h~~~v~~v~~~p~~-~ 253 (354)
T 2pbi_B 185 SGQLLQ---------SFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFE-THESDVNSVRYYPSG-D 253 (354)
T ss_dssp TCCEEE---------EEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTS-S
T ss_pred CCeEEE---------EEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEec-CCCCCeEEEEEeCCC-C
Confidence 865421 11245577999999874 5788999999999999999999999998 699999999999999 8
Q ss_pred EEEEEeCCCeEEEEECCCCCccceEEccCC-CCeEEEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcE
Q 003822 608 IFATSSFDQDVKLWDLRQKPIQPCYTASSS-KGNVMVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNY 686 (793)
Q Consensus 608 ~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~-~~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~ 686 (793)
+|++|+.|++|++||+++......+....+ ..+.+++|+|+|++|++|+.|+.|++||+.+++.+..+. .|...+.
T Consensus 254 ~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~---~h~~~v~ 330 (354)
T 2pbi_B 254 AFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILF---GHENRVS 330 (354)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEEC---CCSSCEE
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEE---CCCCcEE
Confidence 999999999999999998744333332222 244569999999999999999999999999999877764 5667899
Q ss_pred EEEEeeCCCeEEEEEeCCCcEEEEEE
Q 003822 687 TRSYYLNGRDYIVSGSCDEHVVRICC 712 (793)
Q Consensus 687 s~afspdg~~~L~Sgs~Dg~II~IWD 712 (793)
.++|+|+|. +|++|+.|++| +||+
T Consensus 331 ~l~~spdg~-~l~sgs~D~~v-~vW~ 354 (354)
T 2pbi_B 331 TLRVSPDGT-AFCSGSWDHTL-RVWA 354 (354)
T ss_dssp EEEECTTSS-CEEEEETTSEE-EEEC
T ss_pred EEEECCCCC-EEEEEcCCCCE-EecC
Confidence 999999999 99999999999 9995
No 59
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=99.97 E-value=1.1e-29 Score=276.80 Aligned_cols=244 Identities=13% Similarity=0.228 Sum_probs=197.3
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcc
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSI 535 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~ 535 (793)
|++++|+| ++.++++|+.||+|++||+.+++.+..+. +|...|.+++|+ +++++|++|+.|++|++||+..... .
T Consensus 79 V~~~~~~~-~~~~l~s~s~D~~v~lwd~~~~~~~~~~~--~h~~~v~~v~~s-p~~~~l~s~~~d~~i~~wd~~~~~~-~ 153 (343)
T 2xzm_R 79 VSDLALSQ-ENCFAISSSWDKTLRLWDLRTGTTYKRFV--GHQSEVYSVAFS-PDNRQILSAGAEREIKLWNILGECK-F 153 (343)
T ss_dssp EEEEEECS-STTEEEEEETTSEEEEEETTSSCEEEEEE--CCCSCEEEEEEC-SSTTEEEEEETTSCEEEEESSSCEE-E
T ss_pred eEEEEECC-CCCEEEEEcCCCcEEEEECCCCcEEEEEc--CCCCcEEEEEEC-CCCCEEEEEcCCCEEEEEeccCCce-e
Confidence 99999999 89999999999999999999999888876 899999999998 7899999999999999999974221 1
Q ss_pred cccccCCceeEecCCCCeEEEEEccCC----------CEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCC
Q 003822 536 RGMHYGAGTVTFDEFDQLTSVHVNSMD----------ELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHS 605 (793)
Q Consensus 536 ~~~~~~~~~~~~~~~~~V~sv~~s~~~----------~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg 605 (793)
.... ...|...|.+++|+|.+ ..+++++.||.|++|| ..++....+. +|...|++++|+|++
T Consensus 154 ~~~~------~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~-~h~~~v~~~~~s~~g 225 (343)
T 2xzm_R 154 SSAE------KENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFK-AHESNVNHLSISPNG 225 (343)
T ss_dssp ECCT------TTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEE-CCSSCEEEEEECTTS
T ss_pred eeec------ccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEc-CccccceEEEECCCC
Confidence 0000 01345679999998876 6888999999999999 4567777887 699999999999999
Q ss_pred CcEEEEEeCCCeEEEEECCCCCccceEEccCCCCeEEEEEecCCCEEEEEeCCCeEEEEEcCCCcEEE--EEeee-----
Q 003822 606 PSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHL--NFGIT----- 678 (793)
Q Consensus 606 ~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~--~l~~~----- 678 (793)
.+|++|+.||.|++||++.... +...+.....+.+++|+|+++++++++ |+.|++||+.+++... .+...
T Consensus 226 -~~l~sgs~dg~v~iwd~~~~~~-~~~~~~~~~~v~~v~~sp~~~~la~~~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~ 302 (343)
T 2xzm_R 226 -KYIATGGKDKKLLIWDILNLTY-PQREFDAGSTINQIAFNPKLQWVAVGT-DQGVKIFNLMTQSKAPVCTIEAEPITKA 302 (343)
T ss_dssp -SEEEEEETTCEEEEEESSCCSS-CSEEEECSSCEEEEEECSSSCEEEEEE-SSCEEEEESSSCCSCSEEECCCCSGGGB
T ss_pred -CEEEEEcCCCeEEEEECCCCcc-cceeecCCCcEEEEEECCCCCEEEEEC-CCCEEEEEeCCCCCCceEEeecCcchhh
Confidence 8999999999999999954322 222332334566799999999887665 7889999998876543 33211
Q ss_pred ---cCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCc
Q 003822 679 ---ATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGR 717 (793)
Q Consensus 679 ---~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~ 717 (793)
..+...+..++|+|+|. +|++|+.||.| ++|++.+|.
T Consensus 303 ~~~~~~~~~v~~~~~sp~g~-~l~sg~~Dg~v-~~w~~~~g~ 342 (343)
T 2xzm_R 303 EGQKGKNPQCTSLAWNALGK-KLFAGFTDGVI-RTFSFETSA 342 (343)
T ss_dssp TTBCCSCCCEEEEEECSSSC-CEEEEETTSEE-EEEEEEEEE
T ss_pred hhhcCCCCceEEEEECCCCC-eEEEecCCceE-EEEEEEccC
Confidence 13445688999999999 99999999999 999987753
No 60
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.97 E-value=7.2e-30 Score=274.86 Aligned_cols=277 Identities=12% Similarity=0.125 Sum_probs=225.6
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCe---EEEEEeccCCCCCEEEEEEeeCCCC-EEEEEEcCCcEEEEEc-CC
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENEN---IVSYIPSFGAMNSVLGLCWLKKYPS-KLIAGSDNGSLKLYDI-RH 530 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~---~i~~l~~~~h~~~V~sv~fs~~~g~-~Lasgs~DgtV~vWDl-~~ 530 (793)
|++++|+| ++.+|++|+.||.|++|++.+++ ....+. +|...|.+++|+ ++++ +|++|+.||.|++||+ .+
T Consensus 14 v~~~~~s~-~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~--~~~~~v~~~~~~-~~~~~~l~~~~~dg~i~~wd~~~~ 89 (342)
T 1yfq_A 14 ISDIKIIP-SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSL--RYKHPLLCCNFI-DNTDLQIYVGTVQGEILKVDLIGS 89 (342)
T ss_dssp EEEEEEEG-GGTEEEEEETTSEEEEEEEETTTTEEEEEEEE--ECSSCEEEEEEE-ESSSEEEEEEETTSCEEEECSSSS
T ss_pred EEEEEEcC-CCCEEEEEcCCCeEEEEEeCCCCccccceeee--ecCCceEEEEEC-CCCCcEEEEEcCCCeEEEEEeccC
Confidence 99999999 89999999999999999998776 222333 789999999998 6789 9999999999999999 77
Q ss_pred CCCcccccccCCceeEec--CCCCeEEEEEccCCCEEEEEECCCcEEEEECCC---------CcEEEEEcccCCCCeEEE
Q 003822 531 MPPSIRGMHYGAGTVTFD--EFDQLTSVHVNSMDELFLASGYSKNIALYDINS---------GRRLQVFADMHKEHINVV 599 (793)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~--~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~t---------g~~l~~~~~gh~~~V~sv 599 (793)
++. ..... |...|.+++|+| +..+++++.|+.|++||+++ ++++..+. |...|.++
T Consensus 90 ~~~----------~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~v~~~ 156 (342)
T 1yfq_A 90 PSF----------QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK--VKNKIFTM 156 (342)
T ss_dssp SSE----------EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS--SCCCEEEE
T ss_pred Cce----------EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe--eCCceEEE
Confidence 543 11123 567899999999 99999999999999999997 77666665 88999999
Q ss_pred EEcCCCCcEEEEEeCCCeEEEEECCC-CCccceEEccCC-CCeEEEEEec-CCCEEEEEeCCCeEEEEEcCCC------c
Q 003822 600 KFSNHSPSIFATSSFDQDVKLWDLRQ-KPIQPCYTASSS-KGNVMVCFSP-DDHYLLVSAVDNEVRQLLAVDG------R 670 (793)
Q Consensus 600 ~fspdg~~~LaTgs~Dg~IrIWDlrt-~~~~~~~~l~~~-~~~vsv~fSp-dg~~Lasgs~Dg~I~IwDl~tg------~ 670 (793)
+|+|++ +++++.|+.|++||+++ ...........+ ..+.+++|+| +++++++++.||.|++|++..+ +
T Consensus 157 ~~~~~~---l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~ 233 (342)
T 1yfq_A 157 DTNSSR---LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSS 233 (342)
T ss_dssp EECSSE---EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCT
T ss_pred EecCCc---EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccc
Confidence 999865 99999999999999998 543333333333 3455699999 9999999999999999999887 6
Q ss_pred EEEEEeeecC------CCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCCCCccceeeeccCCccc
Q 003822 671 VHLNFGITAT------GSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPFR 744 (793)
Q Consensus 671 ~~~~l~~~~~------~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~ 744 (793)
....+..+.. +...+..++|+|+++ +|++|+.||.| ++||+.+++.+. .+.+|.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i-~vwd~~~~~~~~--~~~~~h---------------- 293 (342)
T 1yfq_A 234 KRFAFRCHRLNLKDTNLAYPVNSIEFSPRHK-FLYTAGSDGII-SCWNLQTRKKIK--NFAKFN---------------- 293 (342)
T ss_dssp TCEEEECCCCCTTCCSSCCCEEEEEECTTTC-CEEEEETTSCE-EEEETTTTEEEE--ECCCCS----------------
T ss_pred cceeeecccccccccccceeEEEEEEcCCCC-EEEEecCCceE-EEEcCccHhHhh--hhhccc----------------
Confidence 6666654321 133789999999998 99999999999 999999999988 666551
Q ss_pred cCCccEEEEEEcCCCCceeeEeeEEEeCCCc-EEEEcC
Q 003822 745 DFNMSILAAYTRPSSKSEIVKVNLLASTDHC-DKECSH 781 (793)
Q Consensus 745 ~h~~~V~sva~~P~~~~~iv~~~ltaS~Dg~-VkvW~~ 781 (793)
...|.+++ |+ ...++ +|+.||+ .+.|..
T Consensus 294 --~~~v~~~~--~~-~~~l~----s~s~Dg~~~~~~~~ 322 (342)
T 1yfq_A 294 --EDSVVKIA--CS-DNILC----LATSDDTFKTNAAI 322 (342)
T ss_dssp --SSEEEEEE--EC-SSEEE----EEEECTHHHHCSSS
T ss_pred --CCCceEec--CC-CCeEE----EEecCCcccccccc
Confidence 34688888 74 44566 8999999 777764
No 61
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.97 E-value=1.3e-28 Score=277.98 Aligned_cols=281 Identities=14% Similarity=0.186 Sum_probs=224.2
Q ss_pred ccCCCCCCCCcccceEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCC
Q 003822 442 VSGNHMGDENRSFRPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNG 521 (793)
Q Consensus 442 ~~g~~~~~~~~~~~V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~Dg 521 (793)
..||.... ++++.+++ +++++|+.||+|++||+.+++.+..+. +|.+.|.+++|+ +++ .+++|+.||
T Consensus 117 l~~h~~~v------~~~~~~~~---~~l~sgs~dg~i~vwd~~~~~~~~~~~--~h~~~V~~l~~~-~~~-~l~s~s~dg 183 (464)
T 3v7d_B 117 LRGHMTSV------ITCLQFED---NYVITGADDKMIRVYDSINKKFLLQLS--GHDGGVWALKYA-HGG-ILVSGSTDR 183 (464)
T ss_dssp EECCSSSC------EEEEEEET---TEEEEEETTSCEEEEETTTTEEEEEEC--CCSSCEEEEEEC-STT-EEEEEETTS
T ss_pred EcCCCCCc------EEEEEECC---CEEEEEcCCCcEEEEECCCCcEEEEEe--CCCcCEEEEEEc-CCC-EEEEEeCCC
Confidence 34665542 57777765 799999999999999999999988887 899999999997 455 999999999
Q ss_pred cEEEEEcCCCCCcccccccCCceeEecCCCCeEEEEEcc--CCCEEEEEECCCcEEEEECCCCcE---------------
Q 003822 522 SLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNS--MDELFLASGYSKNIALYDINSGRR--------------- 584 (793)
Q Consensus 522 tV~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~--~~~~lla~g~Dg~I~IWDl~tg~~--------------- 584 (793)
+|++||+++++... ....|...|.++++++ ++..+++++.||.|++||++++..
T Consensus 184 ~i~vwd~~~~~~~~---------~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~ 254 (464)
T 3v7d_B 184 TVRVWDIKKGCCTH---------VFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFH 254 (464)
T ss_dssp CEEEEETTTTEEEE---------EECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEES
T ss_pred CEEEEECCCCcEEE---------EECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEee
Confidence 99999998865311 1123668899999984 557788888999999999997653
Q ss_pred --------EEEEcccCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEECCCCCccceEEccCCCCeE-EEEEecCCCEEEEE
Q 003822 585 --------LQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLVS 655 (793)
Q Consensus 585 --------l~~~~~gh~~~V~sv~fspdg~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~~~~v-sv~fSpdg~~Lasg 655 (793)
+..+. +|...|.++. +++ .++++|+.||.|++||++++ ..+..+.+|...+ +++|+|+++++++|
T Consensus 255 ~~~~~~~~~~~~~-~~~~~v~~~~--~~~-~~l~~~~~d~~i~vwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~sg 328 (464)
T 3v7d_B 255 TPEENPYFVGVLR-GHMASVRTVS--GHG-NIVVSGSYDNTLIVWDVAQM--KCLYILSGHTDRIYSTIYDHERKRCISA 328 (464)
T ss_dssp CGGGCTTEEEEEC-CCSSCEEEEE--EET-TEEEEEETTSCEEEEETTTT--EEEEEECCCSSCEEEEEEETTTTEEEEE
T ss_pred ccCCCeEEEEEcc-CccceEEEEc--CCC-CEEEEEeCCCeEEEEECCCC--cEEEEecCCCCCEEEEEEcCCCCEEEEE
Confidence 44555 6999998874 566 79999999999999999987 4556666666655 59999999999999
Q ss_pred eCCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCCCCcccee
Q 003822 656 AVDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKGSGTSMFV 735 (793)
Q Consensus 656 s~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~v 735 (793)
+.||.|++||+.+++.+..+. .+...+..++|+ +. ++++|+.||.| ++||+.+++... ....
T Consensus 329 ~~dg~i~vwd~~~~~~~~~~~---~h~~~v~~~~~~--~~-~l~s~s~dg~v-~vwd~~~~~~~~--~~~~--------- 390 (464)
T 3v7d_B 329 SMDTTIRIWDLENGELMYTLQ---GHTALVGLLRLS--DK-FLVSAAADGSI-RGWDANDYSRKF--SYHH--------- 390 (464)
T ss_dssp ETTSCEEEEETTTTEEEEEEC---CCSSCEEEEEEC--SS-EEEEEETTSEE-EEEETTTCCEEE--EEEC---------
T ss_pred eCCCcEEEEECCCCcEEEEEe---CCCCcEEEEEEc--CC-EEEEEeCCCcE-EEEECCCCceee--eecC---------
Confidence 999999999999999988875 455677777776 44 99999999999 999999988766 3321
Q ss_pred eeccCCccccCCccEEEEEEcCCCCceeeEeeEEEeCCCcEEEEcCCCCC
Q 003822 736 QSLRGDPFRDFNMSILAAYTRPSSKSEIVKVNLLASTDHCDKECSHGQHS 785 (793)
Q Consensus 736 ~sl~g~~~~~h~~~V~sva~~P~~~~~iv~~~ltaS~Dg~VkvW~~~~~~ 785 (793)
...+..++|+|++ ..++ +|+ ||.|++|+.....
T Consensus 391 -----------~~~~~~~~~~~~~-~~l~----~~~-dg~i~iwd~~~g~ 423 (464)
T 3v7d_B 391 -----------TNLSAITTFYVSD-NILV----SGS-ENQFNIYNLRSGK 423 (464)
T ss_dssp -----------TTCCCEEEEEECS-SEEE----EEE-TTEEEEEETTTCC
T ss_pred -----------CCCccEEEEEeCC-CEEE----Eec-CCeEEEEECCCCc
Confidence 1245667888853 3444 555 9999999987664
No 62
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.8e-29 Score=274.08 Aligned_cols=247 Identities=15% Similarity=0.203 Sum_probs=186.1
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCC-------CeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEc
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHEN-------ENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDI 528 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t-------~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl 528 (793)
|++++|+| ++++|++|+.||+|+|||+.. .+....+. +|...|.+++|+ +++++|++|+.|++|++||+
T Consensus 61 v~~v~~sp-~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~--~h~~~V~~v~~s-p~g~~las~s~D~~v~iwd~ 136 (330)
T 2hes_X 61 IRSVAWRP-HTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIE--GHENEVKGVAWS-NDGYYLATCSRDKSVWIWET 136 (330)
T ss_dssp EEEEEECT-TSSEEEEEETTSCEEEEEC-------CCCEEEEEEC------CEEEEEEC-TTSCEEEEEETTSCEEEEEC
T ss_pred EEEEEECC-CCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEc--CCCCcEEEEEEC-CCCCEEEEEeCCCEEEEEec
Confidence 99999999 899999999999999999853 23444554 899999999998 78999999999999999999
Q ss_pred CCCCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCC--cEEEEEcccCCCCeEEEEEcCCC-
Q 003822 529 RHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSG--RRLQVFADMHKEHINVVKFSNHS- 605 (793)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg--~~l~~~~~gh~~~V~sv~fspdg- 605 (793)
.......... .....|...|.+++|+|++..+++++.|++|++||..++ +++..+. +|.+.|.+++|+|++
T Consensus 137 ~~~~~~~~~~-----~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~ 210 (330)
T 2hes_X 137 DESGEEYECI-----SVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLN-GHEGTVWSSDFDKTEG 210 (330)
T ss_dssp CTTCCCCEEE-----EEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEEC-CCSSCEEEEEECCSSS
T ss_pred cCCCCCeEEE-----EEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEcc-CCCCcEEEEEecCCCC
Confidence 5432111000 112245678999999999999999999999999999876 6778888 799999999999983
Q ss_pred CcEEEEEeCCCeEEEEECCCCCc------cceEEccC-CCC-eEEEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEee
Q 003822 606 PSIFATSSFDQDVKLWDLRQKPI------QPCYTASS-SKG-NVMVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGI 677 (793)
Q Consensus 606 ~~~LaTgs~Dg~IrIWDlrt~~~------~~~~~l~~-~~~-~vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~ 677 (793)
...|++|+.|++|++||++.+.. .....+.+ |.. +.+++|++++ +|++++.||.|++||..+++.......
T Consensus 211 ~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~ 289 (330)
T 2hes_X 211 VFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKR 289 (330)
T ss_dssp SCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEE
T ss_pred eeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEecc
Confidence 26899999999999999876421 22233333 444 4469999765 799999999999999988753222121
Q ss_pred ecCCCC-CcEEEEEee--CCCeEEEEEeCCCcEEEEEEcCC
Q 003822 678 TATGSS-QNYTRSYYL--NGRDYIVSGSCDEHVVRICCAQT 715 (793)
Q Consensus 678 ~~~~~~-~v~s~afsp--dg~~~L~Sgs~Dg~II~IWDv~t 715 (793)
...+.. .+..++|+| ++. +|++|+.||+| +|||+.+
T Consensus 290 ~~~h~~~~v~~v~~~~~~~~~-~las~s~Dg~v-~~W~~~~ 328 (330)
T 2hes_X 290 ALCHGVYEINVVKWLELNGKT-ILATGGDDGIV-NFWSLEK 328 (330)
T ss_dssp SCTTTTSCEEEEEEC-----C-CEEEEETTSEE-EEEEC--
T ss_pred ccccccceEEEEEEecCCCce-EEEEecCCCcE-EEEEecc
Confidence 223443 688999999 566 99999999999 9999865
No 63
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.97 E-value=2e-28 Score=276.60 Aligned_cols=281 Identities=16% Similarity=0.246 Sum_probs=225.4
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEee-CCCCEEEEEEcCCcEEEEEcCCCCCc
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLK-KYPSKLIAGSDNGSLKLYDIRHMPPS 534 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~-~~g~~Lasgs~DgtV~vWDl~~~~~~ 534 (793)
|++++|+| ++ ++++|+.||+|++||+++++.+..+. +|...|.+++|++ +++.++++|+.||+|++||+.+....
T Consensus 165 V~~l~~~~-~~-~l~s~s~dg~i~vwd~~~~~~~~~~~--~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~ 240 (464)
T 3v7d_B 165 VWALKYAH-GG-ILVSGSTDRTVRVWDIKKGCCTHVFE--GHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSV 240 (464)
T ss_dssp EEEEEECS-TT-EEEEEETTSCEEEEETTTTEEEEEEC--CCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC
T ss_pred EEEEEEcC-CC-EEEEEeCCCCEEEEECCCCcEEEEEC--CCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCccc
Confidence 99999999 55 99999999999999999999888876 8999999999986 46789999999999999999986542
Q ss_pred ccccccCC--------------ceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEE
Q 003822 535 IRGMHYGA--------------GTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVK 600 (793)
Q Consensus 535 ~~~~~~~~--------------~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~ 600 (793)
........ ......|...|.++. +++..+++++.||.|++||+++++++..+. +|...|.+++
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~-~~~~~v~~~~ 317 (464)
T 3v7d_B 241 PDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVS--GHGNIVVSGSYDNTLIVWDVAQMKCLYILS-GHTDRIYSTI 317 (464)
T ss_dssp ------CCSSEEESCGGGCTTEEEEECCCSSCEEEEE--EETTEEEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEE
T ss_pred ccccccCCcceEeeccCCCeEEEEEccCccceEEEEc--CCCCEEEEEeCCCeEEEEECCCCcEEEEec-CCCCCEEEEE
Confidence 21100000 011223456677764 678899999999999999999999999998 6999999999
Q ss_pred EcCCCCcEEEEEeCCCeEEEEECCCCCccceEEccCCCCeEE-EEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeec
Q 003822 601 FSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVM-VCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITA 679 (793)
Q Consensus 601 fspdg~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~~~~vs-v~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~ 679 (793)
|+|++ .++++|+.||.|++||++++ ..+..+.+|...+. ++|+ +++|++|+.||.|++||+.++.......
T Consensus 318 ~~~~~-~~l~sg~~dg~i~vwd~~~~--~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~--- 389 (464)
T 3v7d_B 318 YDHER-KRCISASMDTTIRIWDLENG--ELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYH--- 389 (464)
T ss_dssp EETTT-TEEEEEETTSCEEEEETTTT--EEEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEE---
T ss_pred EcCCC-CEEEEEeCCCcEEEEECCCC--cEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeec---
Confidence 99998 89999999999999999987 45666777776664 8886 6899999999999999999988765553
Q ss_pred CCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCCCCccceeeeccCCccccCCccEEEEEEcCCC
Q 003822 680 TGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSS 759 (793)
Q Consensus 680 ~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~ 759 (793)
+...+..++|++++. ++++|+ ||.| ++||+.+|+.+. . ...+|...|.+++|++.
T Consensus 390 -~~~~~~~~~~~~~~~-~l~~~~-dg~i-~iwd~~~g~~~~--~------------------~~~~~~~~v~~v~~~~~- 444 (464)
T 3v7d_B 390 -HTNLSAITTFYVSDN-ILVSGS-ENQF-NIYNLRSGKLVH--A------------------NILKDADQIWSVNFKGK- 444 (464)
T ss_dssp -CTTCCCEEEEEECSS-EEEEEE-TTEE-EEEETTTCCEEE--S------------------CTTTTCSEEEEEEEETT-
T ss_pred -CCCCccEEEEEeCCC-EEEEec-CCeE-EEEECCCCcEEe--h------------------hhccCCCcEEEEEecCC-
Confidence 445677789999998 888888 8999 999999999987 2 11234468999999853
Q ss_pred CceeeEeeEEEeCCCcEEEEcC
Q 003822 760 KSEIVKVNLLASTDHCDKECSH 781 (793)
Q Consensus 760 ~~~iv~~~ltaS~Dg~VkvW~~ 781 (793)
..++ .++.||.+.+|-.
T Consensus 445 -~l~~----~~~~~g~~~i~~l 461 (464)
T 3v7d_B 445 -TLVA----AVEKDGQSFLEIL 461 (464)
T ss_dssp -EEEE----EEEETTEEEEEEE
T ss_pred -EEEE----EEEeCCeEEEEEe
Confidence 2333 5567777766654
No 64
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=99.97 E-value=7.6e-29 Score=265.24 Aligned_cols=251 Identities=18% Similarity=0.237 Sum_probs=208.8
Q ss_pred ccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCc
Q 003822 494 SFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKN 573 (793)
Q Consensus 494 ~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~ 573 (793)
..+|...|.+++|+ +++++|++|+.||.|++|++.+++.. .....|...|.+++|+|++..+++++.|+.
T Consensus 19 ~~gh~~~v~~~~~s-~~~~~l~s~~~dg~i~iw~~~~~~~~---------~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~ 88 (312)
T 4ery_A 19 LAGHTKAVSSVKFS-PNGEWLASSSADKLIKIWGAYDGKFE---------KTISGHKLGISDVAWSSDSNLLVSASDDKT 88 (312)
T ss_dssp ECCCSSCEEEEEEC-TTSSEEEEEETTSCEEEEETTTCCEE---------EEECCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred EcccCCcEEEEEEC-CCCCEEEEeeCCCeEEEEeCCCcccc---------hhhccCCCceEEEEEcCCCCEEEEECCCCE
Confidence 34999999999998 78999999999999999999876541 112245578999999999999999999999
Q ss_pred EEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEECCCCCccceEEccCCCCeE-EEEEecCCCEE
Q 003822 574 IALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYL 652 (793)
Q Consensus 574 I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~~~~v-sv~fSpdg~~L 652 (793)
|++||+++++.+..+. +|...|.+++|+|++ .++++|+.||.|++||+++++ ....+..|...+ +++|+|+|+++
T Consensus 89 i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l 164 (312)
T 4ery_A 89 LKIWDVSSGKCLKTLK-GHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGK--CLKTLPAHSDPVSAVHFNRDGSLI 164 (312)
T ss_dssp EEEEETTTCCEEEEEE-CCSSCEEEEEECSSS-SEEEEEETTSCEEEEETTTCC--EEEEECCCSSCEEEEEECTTSSEE
T ss_pred EEEEECCCCcEEEEEc-CCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCE--EEEEecCCCCcEEEEEEcCCCCEE
Confidence 9999999999999998 699999999999998 899999999999999999874 445566666555 59999999999
Q ss_pred EEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCCCCcc
Q 003822 653 LVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKGSGTS 732 (793)
Q Consensus 653 asgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s 732 (793)
++++.||.|++||+.+++.+..+. ..+...+..++|+|++. +|++++.||.| ++||+.+++.+. .+.+|...
T Consensus 165 ~~~~~d~~i~~wd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~l~~~~~d~~i-~iwd~~~~~~~~--~~~~~~~~-- 236 (312)
T 4ery_A 165 VSSSYDGLCRIWDTASGQCLKTLI--DDDNPPVSFVKFSPNGK-YILAATLDNTL-KLWDYSKGKCLK--TYTGHKNE-- 236 (312)
T ss_dssp EEEETTSCEEEEETTTCCEEEEEC--CSSCCCEEEEEECTTSS-EEEEEETTTEE-EEEETTTTEEEE--EECSSCCS--
T ss_pred EEEeCCCcEEEEECCCCceeeEEe--ccCCCceEEEEECCCCC-EEEEEcCCCeE-EEEECCCCcEEE--EEEecCCc--
Confidence 999999999999999998877663 23445678899999999 99999999999 999999999998 77777520
Q ss_pred ceeeeccCCccccCCccEEEEEEcCCCCceeeEeeEEEeCCCcEEEEcCCCCC
Q 003822 733 MFVQSLRGDPFRDFNMSILAAYTRPSSKSEIVKVNLLASTDHCDKECSHGQHS 785 (793)
Q Consensus 733 ~~v~sl~g~~~~~h~~~V~sva~~P~~~~~iv~~~ltaS~Dg~VkvW~~~~~~ 785 (793)
.......+++.....++ +|+.||.|++|+.....
T Consensus 237 ---------------~~~~~~~~~~~~~~~l~----sg~~dg~i~vwd~~~~~ 270 (312)
T 4ery_A 237 ---------------KYCIFANFSVTGGKWIV----SGSEDNLVYIWNLQTKE 270 (312)
T ss_dssp ---------------SSCCCEEEECSSSCEEE----ECCTTSCEEEEETTTCC
T ss_pred ---------------eEEEEEEEEeCCCcEEE----EECCCCEEEEEECCCch
Confidence 01122344443445555 89999999999987654
No 65
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.97 E-value=4.9e-29 Score=266.32 Aligned_cols=252 Identities=14% Similarity=0.162 Sum_probs=197.6
Q ss_pred cCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCC-cccccccCCceeEecCCCCeEEEEEccC--CCEEEEEECC
Q 003822 495 FGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPP-SIRGMHYGAGTVTFDEFDQLTSVHVNSM--DELFLASGYS 571 (793)
Q Consensus 495 ~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~-~~~~~~~~~~~~~~~~~~~V~sv~~s~~--~~~lla~g~D 571 (793)
.+|.+.|.+++|+ +++++|++|+.|++|++||+..... ... ....|..+|.+++|+++ +..+++++.|
T Consensus 6 ~~h~~~V~~~~~s-~~g~~las~s~D~~v~iw~~~~~~~~~~~--------~l~gH~~~V~~v~~s~~~~g~~l~s~s~D 76 (297)
T 2pm7_B 6 NAHNEMIHDAVMD-YYGKRMATCSSDKTIKIFEVEGETHKLID--------TLTGHEGPVWRVDWAHPKFGTILASCSYD 76 (297)
T ss_dssp CSCSSCEEEEEEC-TTSSEEEEEETTSCEEEEEBCSSCBCCCE--------EECCCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred cCCcCceEEEEEC-CCCCEEEEEeCCCEEEEEecCCCCcEEEE--------EEccccCCeEEEEecCCCcCCEEEEEcCC
Confidence 4899999999997 7999999999999999999975321 111 12246688999999764 6788899999
Q ss_pred CcEEEEECCCCc--EEEEEcccCCCCeEEEEEcCC--CCcEEEEEeCCCeEEEEECCCCCccceEEccCCCCeE-EEEEe
Q 003822 572 KNIALYDINSGR--RLQVFADMHKEHINVVKFSNH--SPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFS 646 (793)
Q Consensus 572 g~I~IWDl~tg~--~l~~~~~gh~~~V~sv~fspd--g~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~~~~v-sv~fS 646 (793)
++|++||+++++ .+..+. +|...|++++|+|+ + .+|++|+.|++|++||+++........+.+|...+ +++|+
T Consensus 77 ~~v~iWd~~~~~~~~~~~~~-~h~~~v~~v~~~p~~~g-~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~ 154 (297)
T 2pm7_B 77 GKVMIWKEENGRWSQIAVHA-VHSASVNSVQWAPHEYG-PMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWA 154 (297)
T ss_dssp TEEEEEEBSSSCBCCCEEEC-CCSSCEEEEEECCGGGC-SEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEEC
T ss_pred CEEEEEEcCCCceEEEEEee-cCCCceeEEEeCcCCCC-cEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeec
Confidence 999999999874 556666 69999999999997 5 79999999999999999876333234455665544 69999
Q ss_pred cC-------------CCEEEEEeCCCeEEEEEcCCCc----EEEEEeeecCCCCCcEEEEEeeCC--CeEEEEEeCCCcE
Q 003822 647 PD-------------DHYLLVSAVDNEVRQLLAVDGR----VHLNFGITATGSSQNYTRSYYLNG--RDYIVSGSCDEHV 707 (793)
Q Consensus 647 pd-------------g~~Lasgs~Dg~I~IwDl~tg~----~~~~l~~~~~~~~~v~s~afspdg--~~~L~Sgs~Dg~I 707 (793)
|+ +++|++|+.|+.|++||+.+++ ....+. .|...+..++|+|++ ..+|++|+.|++|
T Consensus 155 p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~---~H~~~V~~v~~sp~~~~~~~las~s~D~~v 231 (297)
T 2pm7_B 155 PATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLE---GHSDWVRDVAWSPTVLLRSYMASVSQDRTC 231 (297)
T ss_dssp CCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEEC---CCSSCEEEEEECCCCSSSEEEEEEETTSCE
T ss_pred CCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEec---CCCCceEEEEECCCCCCceEEEEEECCCcE
Confidence 97 5799999999999999998876 333443 466789999999996 3499999999999
Q ss_pred EEEEEcCCCcEEEe-eeecCCCCCccceeeeccCCccccCCccEEEEEEcCCCCceeeEeeEEEeCCCcEEEEcCCC
Q 003822 708 VRICCAQTGRRLRD-ISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKSEIVKVNLLASTDHCDKECSHGQ 783 (793)
Q Consensus 708 I~IWDv~tg~~l~~-~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~~~~iv~~~ltaS~Dg~VkvW~~~~ 783 (793)
+|||+.++..... ..+. ..+|...|.+++|+|+ ...++ +|+.||+|++|+...
T Consensus 232 -~iWd~~~~~~~~~~~~~~-----------------~~~~~~~v~~~~~s~~-g~~la----s~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 232 -IIWTQDNEQGPWKKTLLK-----------------EEKFPDVLWRASWSLS-GNVLA----LSGGDNKVTLWKENL 285 (297)
T ss_dssp -EEEEESSTTSCCEEEESS-----------------SSCCSSCEEEEEECSS-SCCEE----EEETTSCEEEEEECT
T ss_pred -EEEEeCCCCCccceeeee-----------------cccCCCcEEEEEECCC-CCEEE----EEcCCCcEEEEEECC
Confidence 9999987532110 0110 1235568999999996 45566 899999999998753
No 66
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.97 E-value=2.9e-30 Score=286.96 Aligned_cols=294 Identities=14% Similarity=0.144 Sum_probs=225.6
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEE-EE-EeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCC
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIV-SY-IPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPP 533 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i-~~-l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~ 533 (793)
...++++|....++++|+.||.|+||++.+.... .. ....+|.+.|.+++|+|.++++|++|+.||+|++||+.++..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~ 116 (402)
T 2aq5_A 37 SGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGL 116 (402)
T ss_dssp SCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCC
T ss_pred CCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCC
Confidence 4458899944445556889999999999764332 11 123489999999999844899999999999999999988643
Q ss_pred cccccccCCceeEecCCCCeEEEEEccCC-CEEEEEECCCcEEEEECCCCcEEEEE--cccCCCCeEEEEEcCCCCcEEE
Q 003822 534 SIRGMHYGAGTVTFDEFDQLTSVHVNSMD-ELFLASGYSKNIALYDINSGRRLQVF--ADMHKEHINVVKFSNHSPSIFA 610 (793)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~V~sv~~s~~~-~~lla~g~Dg~I~IWDl~tg~~l~~~--~~gh~~~V~sv~fspdg~~~La 610 (793)
..... ........|...|.+++|+|++ ..+++++.||.|++||+++++.+..+ . +|...|++++|+|++ .+|+
T Consensus 117 ~~~~~--~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~~~~-~~l~ 192 (402)
T 2aq5_A 117 VLPLR--EPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPD-VHPDTIYSVDWSRDG-ALIC 192 (402)
T ss_dssp SSCBC--SCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTT-TCCSCEEEEEECTTS-SCEE
T ss_pred ccccC--CceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecC-CCCCceEEEEECCCC-CEEE
Confidence 11100 0011223466889999999998 58888889999999999999999999 5 699999999999998 8999
Q ss_pred EEeCCCeEEEEECCCCCccceEEc-cCCCC--eEEEEEecCCCEEEEE---eCCCeEEEEEcCCCcE-EEEEeeecCCCC
Q 003822 611 TSSFDQDVKLWDLRQKPIQPCYTA-SSSKG--NVMVCFSPDDHYLLVS---AVDNEVRQLLAVDGRV-HLNFGITATGSS 683 (793)
Q Consensus 611 Tgs~Dg~IrIWDlrt~~~~~~~~l-~~~~~--~vsv~fSpdg~~Lasg---s~Dg~I~IwDl~tg~~-~~~l~~~~~~~~ 683 (793)
+++.||.|++||++++.. +..+ .+|.+ +..+.|+|+|++|++| +.|+.|++||+.+++. ..... ..+..
T Consensus 193 ~~~~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~--~~~~~ 268 (402)
T 2aq5_A 193 TSCRDKRVRVIEPRKGTV--VAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQE--LDTSS 268 (402)
T ss_dssp EEETTSEEEEEETTTTEE--EEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEE--CCCCS
T ss_pred EEecCCcEEEEeCCCCce--eeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEe--ccCCC
Confidence 999999999999998743 3444 34444 4579999999999999 7899999999998764 22222 23556
Q ss_pred CcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcE-EEeeeecCCCCCccceeeeccCCccccCCccEEEEEEcCCCCce
Q 003822 684 QNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRR-LRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKSE 762 (793)
Q Consensus 684 ~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~-l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~~~~ 762 (793)
.+..++|+|++..++++|+.||.| ++||+.+++. +. .+.++. |...|.+++|+|+
T Consensus 269 ~v~~~~~s~~~~~l~~~g~~dg~i-~i~d~~~~~~~~~--~l~~~~-----------------~~~~v~~~~~sp~---- 324 (402)
T 2aq5_A 269 GVLLPFFDPDTNIVYLCGKGDSSI-RYFEITSEAPFLH--YLSMFS-----------------SKESQRGMGYMPK---- 324 (402)
T ss_dssp SCEEEEEETTTTEEEEEETTCSCE-EEEEECSSTTCEE--EEEEEC-----------------CSSCCSEEEECCG----
T ss_pred ceeEEEEcCCCCEEEEEEcCCCeE-EEEEecCCCcceE--eecccc-----------------cCCcccceEEecc----
Confidence 789999999999333567789999 9999999884 44 333322 3357899999997
Q ss_pred eeEeeEEEeCCCcEEEEcCCCC
Q 003822 763 IVKVNLLASTDHCDKECSHGQH 784 (793)
Q Consensus 763 iv~~~ltaS~Dg~VkvW~~~~~ 784 (793)
..++++.|+.+++|+....
T Consensus 325 ---~~~~~s~~~~~~~~~l~~~ 343 (402)
T 2aq5_A 325 ---RGLEVNKCEIARFYKLHER 343 (402)
T ss_dssp ---GGSCGGGTEEEEEEEEETT
T ss_pred ---cccceecceeEEEEEcCCC
Confidence 4446678889999997653
No 67
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.97 E-value=2.6e-28 Score=274.85 Aligned_cols=271 Identities=17% Similarity=0.247 Sum_probs=224.7
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcc
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSI 535 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~ 535 (793)
+++++++ ++++++|+.||+|++||+.+++.+..+. +|.+.|.+++|+ ++.+++|+.||+|++||+.+++...
T Consensus 122 ~~~~~~~---g~~l~sg~~dg~i~vwd~~~~~~~~~~~--~h~~~v~~~~~~---~~~l~s~~~dg~i~vwd~~~~~~~~ 193 (445)
T 2ovr_B 122 ITCLQFC---GNRIVSGSDDNTLKVWSAVTGKCLRTLV--GHTGGVWSSQMR---DNIIISGSTDRTLKVWNAETGECIH 193 (445)
T ss_dssp EEEEEEE---TTEEEEEETTSCEEEEETTTCCEEEECC--CCSSCEEEEEEE---TTEEEEEETTSCEEEEETTTTEEEE
T ss_pred EEEEEEc---CCEEEEEECCCcEEEEECCCCcEEEEEc--CCCCCEEEEEec---CCEEEEEeCCCeEEEEECCcCcEEE
Confidence 5666654 5899999999999999999999888876 899999999985 6799999999999999998865421
Q ss_pred cccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeCC
Q 003822 536 RGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFD 615 (793)
Q Consensus 536 ~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~D 615 (793)
....|...|.++++ .++.+++++.||.|++||+.+++.+..+. +|...|.+++| ++ .++++|+.|
T Consensus 194 ---------~~~~h~~~v~~~~~--~~~~l~s~s~dg~i~~wd~~~~~~~~~~~-~~~~~v~~~~~--~~-~~l~~~~~d 258 (445)
T 2ovr_B 194 ---------TLYGHTSTVRCMHL--HEKRVVSGSRDATLRVWDIETGQCLHVLM-GHVAAVRCVQY--DG-RRVVSGAYD 258 (445)
T ss_dssp ---------EECCCSSCEEEEEE--ETTEEEEEETTSEEEEEESSSCCEEEEEE-CCSSCEEEEEE--CS-SCEEEEETT
T ss_pred ---------EECCCCCcEEEEEe--cCCEEEEEeCCCEEEEEECCCCcEEEEEc-CCcccEEEEEE--CC-CEEEEEcCC
Confidence 11245578999998 46789999999999999999999999998 69999999999 55 789999999
Q ss_pred CeEEEEECCCCCccceEEccCCCCeE-EEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCC
Q 003822 616 QDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNG 694 (793)
Q Consensus 616 g~IrIWDlrt~~~~~~~~l~~~~~~v-sv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg 694 (793)
|.|++||++++ ..+..+.+|...+ ++.| ++.++++|+.||.|++||+.+++.+..+. .+...+..+ .+++
T Consensus 259 g~i~iwd~~~~--~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~---~~~~~v~~~--~~~~ 329 (445)
T 2ovr_B 259 FMVKVWDPETE--TCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLT---GHQSLTSGM--ELKD 329 (445)
T ss_dssp SCEEEEEGGGT--EEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEEC---CCCSCEEEE--EEET
T ss_pred CEEEEEECCCC--cEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEc---CCcccEEEE--EEeC
Confidence 99999999987 4455666666555 4777 89999999999999999999999988775 334444444 4456
Q ss_pred CeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCCCCccceeeeccCCccccCCccEEEEEEcCCCCceeeEeeEEEeCCC
Q 003822 695 RDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKSEIVKVNLLASTDH 774 (793)
Q Consensus 695 ~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~~~~iv~~~ltaS~Dg 774 (793)
. ++++|+.||.| ++||+.+++.+. .+.++. .|...|.+++|++. .+ ++|+.||
T Consensus 330 ~-~l~~~~~dg~i-~vwd~~~~~~~~--~~~~~~----------------~~~~~v~~~~~~~~---~l----~s~~~dg 382 (445)
T 2ovr_B 330 N-ILVSGNADSTV-KIWDIKTGQCLQ--TLQGPN----------------KHQSAVTCLQFNKN---FV----ITSSDDG 382 (445)
T ss_dssp T-EEEEEETTSCE-EEEETTTCCEEE--EECSTT----------------SCSSCEEEEEECSS---EE----EEEETTS
T ss_pred C-EEEEEeCCCeE-EEEECCCCcEEE--EEccCC----------------CCCCCEEEEEECCC---EE----EEEeCCC
Confidence 6 99999999999 999999999998 666643 35568999999864 34 4899999
Q ss_pred cEEEEcCCCCC
Q 003822 775 CDKECSHGQHS 785 (793)
Q Consensus 775 ~VkvW~~~~~~ 785 (793)
.|++|+.....
T Consensus 383 ~v~iwd~~~~~ 393 (445)
T 2ovr_B 383 TVKLWDLKTGE 393 (445)
T ss_dssp EEEEEETTTCC
T ss_pred eEEEEECCCCc
Confidence 99999987654
No 68
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.97 E-value=1.3e-30 Score=288.56 Aligned_cols=252 Identities=18% Similarity=0.255 Sum_probs=204.3
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCe-------EEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEc
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENEN-------IVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDI 528 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~-------~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl 528 (793)
|.+++|+| ++++|++|+.|+.+++||+.+.. .... ..+|.+.|.++.|+|.++..|++|+.|++|++||+
T Consensus 111 v~~~~~s~-~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~--~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~ 187 (380)
T 3iz6_a 111 VMECAFAP-NGQSVACGGLDSACSIFNLSSQADRDGNMPVSRV--LTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDV 187 (380)
T ss_dssp CCCCEECT-TSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCB--CCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECT
T ss_pred EEEEEECC-CCCEEEEeeCCCcEEEEECCCCccccCCccceee--ccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEc
Confidence 78899999 99999999999999999986532 1222 34899999999998666778999999999999999
Q ss_pred CCCCCcccccccCCceeEecCCCCeEEEEEcc-CCCEEEEEECCCcEEEEECC-CCcEEEEEcccCCCCeEEEEEcCCCC
Q 003822 529 RHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNS-MDELFLASGYSKNIALYDIN-SGRRLQVFADMHKEHINVVKFSNHSP 606 (793)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~-~~~~lla~g~Dg~I~IWDl~-tg~~l~~~~~gh~~~V~sv~fspdg~ 606 (793)
.+++....... .....|...|.++++++ ++..+++++.|++|++||++ .++.+..+. +|.+.|++++|+|++
T Consensus 188 ~~~~~~~~~~~----~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~-~h~~~v~~v~~~p~~- 261 (380)
T 3iz6_a 188 TTGQRISIFGS----EFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYH-GHEGDINSVKFFPDG- 261 (380)
T ss_dssp TTCCEEEEECC----CSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEEC-CCSSCCCEEEECTTS-
T ss_pred CCCcEEEEeec----ccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEEC-CcCCCeEEEEEecCC-
Confidence 98765211100 01124567899999987 56778888899999999998 457788888 799999999999999
Q ss_pred cEEEEEeCCCeEEEEECCCCCccceEEccCC-----C-CeEEEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeee-c
Q 003822 607 SIFATSSFDQDVKLWDLRQKPIQPCYTASSS-----K-GNVMVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGIT-A 679 (793)
Q Consensus 607 ~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~-----~-~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~-~ 679 (793)
.+|++|+.||+|++||++++.....+..... . .+.+++|+|+|++|++|+.||.|++||+.+++.+..+... .
T Consensus 262 ~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~ 341 (380)
T 3iz6_a 262 QRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQN 341 (380)
T ss_dssp SEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCS
T ss_pred CeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccC
Confidence 8999999999999999998754433332211 1 1347999999999999999999999999999887776322 3
Q ss_pred CCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcE
Q 003822 680 TGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRR 718 (793)
Q Consensus 680 ~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~ 718 (793)
.|...+..++|+|+|. +|++|+.||+| +||++..++.
T Consensus 342 ~h~~~v~~l~~s~dg~-~l~sgs~D~~i-~iW~~~~~~~ 378 (380)
T 3iz6_a 342 SHEGRISCLGLSSDGS-ALCTGSWDKNL-KIWAFSGHRK 378 (380)
T ss_dssp SCCCCCCEEEECSSSS-EEEEECTTSCE-EEEECCSSSS
T ss_pred CCCCceEEEEECCCCC-EEEEeeCCCCE-EEEecCCCcc
Confidence 4667899999999999 99999999999 9999876643
No 69
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.97 E-value=3.5e-29 Score=291.20 Aligned_cols=303 Identities=14% Similarity=0.109 Sum_probs=236.6
Q ss_pred ceEEEEEeCCCCCEEEEEeCCCeEEEEECCCC----eEEEEEeccCCCCC-EEEEEEeeC--CCCEEEEEEcCCcEEEEE
Q 003822 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENE----NIVSYIPSFGAMNS-VLGLCWLKK--YPSKLIAGSDNGSLKLYD 527 (793)
Q Consensus 455 ~V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~----~~i~~l~~~~h~~~-V~sv~fs~~--~g~~Lasgs~DgtV~vWD 527 (793)
.|++++|+| ++++|++++ ++.|+|||+.++ +....+. +|... |.+++|+ + ++++|++|+.||+|++||
T Consensus 20 ~v~~~~~sp-dg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~--~h~~~~v~~~~~s-p~~~~~~l~s~~~dg~v~vw~ 94 (615)
T 1pgu_A 20 FTTHLSYDP-TTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFT--GHGSSVVTTVKFS-PIKGSQYLCSGDESGKVIVWG 94 (615)
T ss_dssp CCCCCEEET-TTTEEEEEE-TTEEEEEECCSSCCSSCSEEEEC--TTTTSCEEEEEEC-SSTTCCEEEEEETTSEEEEEE
T ss_pred ceeEEEECC-CCCEEEEec-CCeEEEEECCCCCCccccceEEe--cCCCceEEEEEEC-cCCCCCEEEEecCCCEEEEEe
Confidence 389999999 999999998 889999999988 7777776 89999 9999998 7 899999999999999999
Q ss_pred cCCCCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEECC----CcEEEEECCCCcEEEEEcccCCCCeEEEEEcC
Q 003822 528 IRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYS----KNIALYDINSGRRLQVFADMHKEHINVVKFSN 603 (793)
Q Consensus 528 l~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~D----g~I~IWDl~tg~~l~~~~~gh~~~V~sv~fsp 603 (793)
+.++..... ...........+..+|.+++|+|++..+++++.+ +.|++|| +++.+..+. +|...|++++|+|
T Consensus 95 ~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~-~~~~~v~~~~~~~ 170 (615)
T 1pgu_A 95 WTFDKESNS-VEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVS-GHSQRINACHLKQ 170 (615)
T ss_dssp EEEEGGGTE-EEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECC-SCSSCEEEEEECS
T ss_pred CCCCccccc-ccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeee-cCCccEEEEEECC
Confidence 975410000 0000001122356789999999999999999976 6788887 677888888 6999999999999
Q ss_pred CCCcEEEEEeCCCeEEEEECCCCCccceEEccCCCC----eEEEEEecC-CCEEEEEeCCCeEEEEEcCCCcEEEEEee-
Q 003822 604 HSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKG----NVMVCFSPD-DHYLLVSAVDNEVRQLLAVDGRVHLNFGI- 677 (793)
Q Consensus 604 dg~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~~~----~vsv~fSpd-g~~Lasgs~Dg~I~IwDl~tg~~~~~l~~- 677 (793)
+++.++++++.|+.|++||++++ .....+.+|.. +.+++|+|+ |++|++++.||.|++||+.+++.+..+..
T Consensus 171 ~~~~~l~~~~~d~~v~vwd~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 248 (615)
T 1pgu_A 171 SRPMRSMTVGDDGSVVFYQGPPF--KFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDD 248 (615)
T ss_dssp SSSCEEEEEETTTEEEEEETTTB--EEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBT
T ss_pred CCCcEEEEEeCCCcEEEEeCCCc--ceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEeccc
Confidence 99558999999999999999887 44556666665 446999999 99999999999999999999998776621
Q ss_pred ecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCCCCccceee---------------------
Q 003822 678 TATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKGSGTSMFVQ--------------------- 736 (793)
Q Consensus 678 ~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~--------------------- 736 (793)
...+...+..++|+ ++. +|++++.||.+ ++||+.+++.+. .+..+.......+.
T Consensus 249 ~~~~~~~v~~~~~~-~~~-~l~~~~~d~~i-~~wd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~ 323 (615)
T 1pgu_A 249 QEPVQGGIFALSWL-DSQ-KFATVGADATI-RVWDVTTSKCVQ--KWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNF 323 (615)
T ss_dssp TBCCCSCEEEEEES-SSS-EEEEEETTSEE-EEEETTTTEEEE--EEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEE
T ss_pred ccccCCceEEEEEc-CCC-EEEEEcCCCcE-EEEECCCCcEEE--EEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEE
Confidence 11466789999999 887 99999999999 999999999998 66555211110000
Q ss_pred -----eccCCccccCCccEEEEEEcCCCCceeeEeeEEEeCCCcEEEEcCC
Q 003822 737 -----SLRGDPFRDFNMSILAAYTRPSSKSEIVKVNLLASTDHCDKECSHG 782 (793)
Q Consensus 737 -----sl~g~~~~~h~~~V~sva~~P~~~~~iv~~~ltaS~Dg~VkvW~~~ 782 (793)
...-..+.+|...|.+++| |+ ++ +++.||.|++|+..
T Consensus 324 ~d~~~~~~~~~~~~~~~~v~~~~~-~~----l~----~~~~dg~i~~w~~~ 365 (615)
T 1pgu_A 324 YELGHDEVLKTISGHNKGITALTV-NP----LI----SGSYDGRIMEWSSS 365 (615)
T ss_dssp EETTEEEEEEEECCCSSCEEEEET-TT----TE----EEETTSCEEETTTT
T ss_pred EECCCCcEEEEEeCCCCCEEEEEe-cC----cE----EECCCCeEEEEEch
Confidence 0011234467788888888 75 55 78888888888764
No 70
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.97 E-value=2.8e-30 Score=278.71 Aligned_cols=245 Identities=12% Similarity=0.102 Sum_probs=195.5
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeC-CCCEEEEEEcCCcEEEEEcCCCCCc
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKK-YPSKLIAGSDNGSLKLYDIRHMPPS 534 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~-~g~~Lasgs~DgtV~vWDl~~~~~~ 534 (793)
|++++|+| ++++||+|+.|++|+|||+.+++......+.+|.+.|.+++|+++ ++++|++|+.|++|++||++++...
T Consensus 16 V~~v~~s~-~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~ 94 (316)
T 3bg1_A 16 IHDAQMDY-YGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWE 94 (316)
T ss_dssp EEEEEECG-GGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCC
T ss_pred EEEeeEcC-CCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcce
Confidence 99999999 999999999999999999988754322233389999999999754 5889999999999999999875421
Q ss_pred ccccccCCceeEecCCCCeEEEEEccC--CCEEEEEECCCcEEEEECCCCcE---EEEEcccCCCCeEEEEEcCCC----
Q 003822 535 IRGMHYGAGTVTFDEFDQLTSVHVNSM--DELFLASGYSKNIALYDINSGRR---LQVFADMHKEHINVVKFSNHS---- 605 (793)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~V~sv~~s~~--~~~lla~g~Dg~I~IWDl~tg~~---l~~~~~gh~~~V~sv~fspdg---- 605 (793)
.. .....|...|.+++|+|+ +..+++++.|++|++||++.+.. ...+. +|...|.+++|+|+.
T Consensus 95 ~~-------~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~ 166 (316)
T 3bg1_A 95 KS-------HEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINN-AHTIGCNAVSWAPAVVPGS 166 (316)
T ss_dssp EE-------EEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTT-SSSSCBCCCEECCCCCC--
T ss_pred EE-------EEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeec-cccCCcceEEEccccCCcc
Confidence 10 111235678999999987 56788888999999999987632 23334 799999999999973
Q ss_pred ------------CcEEEEEeCCCeEEEEECCCCC-ccceEEccCCCCeE-EEEEecCC----CEEEEEeCCCeEEEEEcC
Q 003822 606 ------------PSIFATSSFDQDVKLWDLRQKP-IQPCYTASSSKGNV-MVCFSPDD----HYLLVSAVDNEVRQLLAV 667 (793)
Q Consensus 606 ------------~~~LaTgs~Dg~IrIWDlrt~~-~~~~~~l~~~~~~v-sv~fSpdg----~~Lasgs~Dg~I~IwDl~ 667 (793)
..+|++|+.|++|++||++... ......+.+|...+ +++|+|++ ++|++++.|++|++|++.
T Consensus 167 ~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~ 246 (316)
T 3bg1_A 167 LIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCD 246 (316)
T ss_dssp ----CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECS
T ss_pred ccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEcc
Confidence 2689999999999999997542 23455677777766 59999987 899999999999999987
Q ss_pred CCc----EEEEEeeecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcC
Q 003822 668 DGR----VHLNFGITATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQ 714 (793)
Q Consensus 668 tg~----~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~ 714 (793)
++. ....+. .+...+..++|+|++. +|++|+.|+.| ++|+..
T Consensus 247 ~~~~~~~~~~~~~---~~~~~v~~v~~sp~g~-~las~~~D~~v-~lw~~~ 292 (316)
T 3bg1_A 247 DASSNTWSPKLLH---KFNDVVWHVSWSITAN-ILAVSGGDNKV-TLWKES 292 (316)
T ss_dssp STTCCCCBCCEEE---ECSSCEEEEEECTTTC-CEEEEESSSCE-EEEEEC
T ss_pred Cccccchhhhhhh---cCCCcEEEEEEcCCCC-EEEEEcCCCeE-EEEEEC
Confidence 631 111222 3456899999999998 99999999999 999986
No 71
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.97 E-value=1.4e-28 Score=286.09 Aligned_cols=284 Identities=12% Similarity=0.098 Sum_probs=212.8
Q ss_pred eEEEEEeCCCCC-EEEEEeCCCeEEEEECCCCeEEEEEeccCCCC---CEEEEEEeeCC-CCEEEEEEcCCcEEEEEcCC
Q 003822 456 PRQFEYHPSISC-LMVFGTLDGEIVVVNHENENIVSYIPSFGAMN---SVLGLCWLKKY-PSKLIAGSDNGSLKLYDIRH 530 (793)
Q Consensus 456 V~~vafsP~d~~-~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~---~V~sv~fs~~~-g~~Lasgs~DgtV~vWDl~~ 530 (793)
|++++|+| ++. ++++|+.||.|++||+.+++.+..+. +|.. .|.+++|+ ++ +++|++++.||.|++||+.+
T Consensus 163 v~~~~~~~-~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~--~~~~~~~~v~~~~~~-~~~~~~l~~~~~dg~i~vwd~~~ 238 (615)
T 1pgu_A 163 INACHLKQ-SRPMRSMTVGDDGSVVFYQGPPFKFSASDR--THHKQGSFVRDVEFS-PDSGEFVITVGSDRKISCFDGKS 238 (615)
T ss_dssp EEEEEECS-SSSCEEEEEETTTEEEEEETTTBEEEEEEC--SSSCTTCCEEEEEEC-STTCCEEEEEETTCCEEEEETTT
T ss_pred EEEEEECC-CCCcEEEEEeCCCcEEEEeCCCcceeeeec--ccCCCCceEEEEEEC-CCCCCEEEEEeCCCeEEEEECCC
Confidence 99999999 655 89999999999999999999888876 7888 99999998 67 99999999999999999988
Q ss_pred CCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcc--------------------
Q 003822 531 MPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFAD-------------------- 590 (793)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~-------------------- 590 (793)
++........ ...|...|.+++|+ ++..+++++.|+.|++||+++++.+..+..
T Consensus 239 ~~~~~~~~~~-----~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 312 (615)
T 1pgu_A 239 GEFLKYIEDD-----QEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRI 312 (615)
T ss_dssp CCEEEECCBT-----TBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEE
T ss_pred CCEeEEeccc-----ccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeE
Confidence 6642111000 00456788999998 888888888899999999887765554431
Q ss_pred ------------------------cCCCCeEEEEEcCC---------------------------------CCcEEEEEe
Q 003822 591 ------------------------MHKEHINVVKFSNH---------------------------------SPSIFATSS 613 (793)
Q Consensus 591 ------------------------gh~~~V~sv~fspd---------------------------------g~~~LaTgs 613 (793)
+|...|++++| |+ + ..+++++
T Consensus 313 ~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~-~~l~~~~ 390 (615)
T 1pgu_A 313 ISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-NPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKA-QEYSSIS 390 (615)
T ss_dssp EEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TTTEEEETTSCEEETTTTEEECCCCSCEEEEECCST-TCCEEEE
T ss_pred EEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cCcEEECCCCeEEEEEchhhcCcccCceEEEEECCC-cEEEEEe
Confidence 23333333333 21 2 2344444
Q ss_pred CCC--------------------------------------------------------------------------eEE
Q 003822 614 FDQ--------------------------------------------------------------------------DVK 619 (793)
Q Consensus 614 ~Dg--------------------------------------------------------------------------~Ir 619 (793)
.|+ .|+
T Consensus 391 ~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~ 470 (615)
T 1pgu_A 391 WDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQ 470 (615)
T ss_dssp TTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEE
T ss_pred CCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEE
Confidence 444 444
Q ss_pred EEECCCCCccceEEccCCCCeE-EEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEee------
Q 003822 620 LWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYL------ 692 (793)
Q Consensus 620 IWDlrt~~~~~~~~l~~~~~~v-sv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afsp------ 692 (793)
+||+.++.... ..+.+|...+ +++|+|+|++|++++.||.|++||+.+++.+..+.. .+...+..++|+|
T Consensus 471 ~~~~~~~~~~~-~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~--~h~~~v~~~~~sp~~~~~~ 547 (615)
T 1pgu_A 471 VFKLSDLEVSF-DLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWA--FRTSKINAISWKPAEKGAN 547 (615)
T ss_dssp EEETTEEEEEE-ECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSC--CCSSCEEEEEECCCC----
T ss_pred EEECCCccccc-cccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeec--CCCCceeEEEEcCcccccc
Confidence 44443321111 3334454444 699999999999999999999999999998766531 2667899999999
Q ss_pred ----CCCeEEEEEeCCCcEEEEEEcCCC-cEEEeeeecCCCCCccceeeeccCCccccCCccEEEEEEcCCCCceeeEee
Q 003822 693 ----NGRDYIVSGSCDEHVVRICCAQTG-RRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKSEIVKVN 767 (793)
Q Consensus 693 ----dg~~~L~Sgs~Dg~II~IWDv~tg-~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~~~~iv~~~ 767 (793)
++. +|++|+.||.| ++||+.++ +.+. .+.+| ...|.+++|+|++. ++
T Consensus 548 ~~~~~~~-~l~~~~~dg~i-~iw~~~~~~~~~~--~~~~h-------------------~~~v~~l~~s~~~~--l~--- 599 (615)
T 1pgu_A 548 EEEIEED-LVATGSLDTNI-FIYSVKRPMKIIK--ALNAH-------------------KDGVNNLLWETPST--LV--- 599 (615)
T ss_dssp --CCSCC-EEEEEETTSCE-EEEESSCTTCCEE--ETTSS-------------------TTCEEEEEEEETTE--EE---
T ss_pred ccccCCC-EEEEEcCCCcE-EEEECCCCceech--hhhcC-------------------ccceEEEEEcCCCC--eE---
Confidence 888 99999999999 99999998 6666 44444 46899999999765 77
Q ss_pred EEEeCCCcEEEEcCCC
Q 003822 768 LLASTDHCDKECSHGQ 783 (793)
Q Consensus 768 ltaS~Dg~VkvW~~~~ 783 (793)
+++.||+|++|++..
T Consensus 600 -s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 600 -SSGADACIKRWNVVL 614 (615)
T ss_dssp -EEETTSCEEEEEEC-
T ss_pred -EecCCceEEEEeeec
Confidence 899999999999753
No 72
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.97 E-value=7.7e-28 Score=271.05 Aligned_cols=278 Identities=14% Similarity=0.185 Sum_probs=230.4
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcc
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSI 535 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~ 535 (793)
|++++|++ +++++|+.||+|++||+.+++.+..+. +|...|.++.|. ++.+++|+.||+|++||+.+++...
T Consensus 162 v~~~~~~~---~~l~s~~~dg~i~vwd~~~~~~~~~~~--~h~~~v~~~~~~---~~~l~s~s~dg~i~~wd~~~~~~~~ 233 (445)
T 2ovr_B 162 VWSSQMRD---NIIISGSTDRTLKVWNAETGECIHTLY--GHTSTVRCMHLH---EKRVVSGSRDATLRVWDIETGQCLH 233 (445)
T ss_dssp EEEEEEET---TEEEEEETTSCEEEEETTTTEEEEEEC--CCSSCEEEEEEE---TTEEEEEETTSEEEEEESSSCCEEE
T ss_pred EEEEEecC---CEEEEEeCCCeEEEEECCcCcEEEEEC--CCCCcEEEEEec---CCEEEEEeCCCEEEEEECCCCcEEE
Confidence 89999986 699999999999999999999988876 899999999984 5789999999999999999865421
Q ss_pred cccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeCC
Q 003822 536 RGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFD 615 (793)
Q Consensus 536 ~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~D 615 (793)
....|...|.++++ ++..+++++.||.|++||+++++.+..+. +|...|.+++| ++ .++++|+.|
T Consensus 234 ---------~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~--~~-~~l~~~~~d 298 (445)
T 2ovr_B 234 ---------VLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQ-GHTNRVYSLQF--DG-IHVVSGSLD 298 (445)
T ss_dssp ---------EEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEEC-CCSSCEEEEEE--CS-SEEEEEETT
T ss_pred ---------EEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEec-CCCCceEEEEE--CC-CEEEEEeCC
Confidence 12245678999998 77889999999999999999999999998 69999999999 55 799999999
Q ss_pred CeEEEEECCCCCccceEEccCCCCeEEEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCCC
Q 003822 616 QDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNGR 695 (793)
Q Consensus 616 g~IrIWDlrt~~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg~ 695 (793)
|.|++||+++++ .+..+.+|...+. +++++++++++|+.||.|++||+.+++.+..+.....+...+..++|+ +.
T Consensus 299 ~~i~i~d~~~~~--~~~~~~~~~~~v~-~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~ 373 (445)
T 2ovr_B 299 TSIRVWDVETGN--CIHTLTGHQSLTS-GMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KN 373 (445)
T ss_dssp SCEEEEETTTCC--EEEEECCCCSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SS
T ss_pred CeEEEEECCCCC--EEEEEcCCcccEE-EEEEeCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CC
Confidence 999999999884 4455666666553 344467899999999999999999999988887544566778888874 45
Q ss_pred eEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCCCCccceeeeccCCccccCCccEEEEEEcCCCCceeeEeeEEEeCCCc
Q 003822 696 DYIVSGSCDEHVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKSEIVKVNLLASTDHC 775 (793)
Q Consensus 696 ~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~~~~iv~~~ltaS~Dg~ 775 (793)
+|++|+.||.| ++||+.+++.+. .+.... ..+|.+.|.+++|+|+ ...++ +|+.||+
T Consensus 374 -~l~s~~~dg~v-~iwd~~~~~~~~--~~~~~~--------------~~~~~~~v~~~~~s~~-~~~la----~~~~dg~ 430 (445)
T 2ovr_B 374 -FVITSSDDGTV-KLWDLKTGEFIR--NLVTLE--------------SGGSGGVVWRIRASNT-KLVCA----VGSRNGT 430 (445)
T ss_dssp -EEEEEETTSEE-EEEETTTCCEEE--EEEECT--------------TGGGTCEEEEEEECSS-EEEEE----EECSSSS
T ss_pred -EEEEEeCCCeE-EEEECCCCceee--eeeccc--------------cCCCCceEEEEEecCC-EEEEE----EcccCCC
Confidence 99999999999 999999999988 442111 1235568999999995 34444 7889998
Q ss_pred ----EEEEcCCCC
Q 003822 776 ----DKECSHGQH 784 (793)
Q Consensus 776 ----VkvW~~~~~ 784 (793)
+.+|+.+..
T Consensus 431 ~~~~l~v~df~~~ 443 (445)
T 2ovr_B 431 EETKLLVLDFDVD 443 (445)
T ss_dssp SCCEEEEEECCCC
T ss_pred CccEEEEEECCCC
Confidence 999998765
No 73
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.97 E-value=1.4e-28 Score=311.69 Aligned_cols=281 Identities=15% Similarity=0.130 Sum_probs=239.6
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcc
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSI 535 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~ 535 (793)
|++++|+| +++++++|+.||+|++||+.+++.+..+. +|.+.|.+++|+ ++++++++|+.||+|++||+.+++...
T Consensus 618 v~~~~~s~-~~~~l~s~~~d~~i~vw~~~~~~~~~~~~--~h~~~v~~~~~s-~~~~~l~s~~~d~~v~vwd~~~~~~~~ 693 (1249)
T 3sfz_A 618 VYHACFSQ-DGQRIASCGADKTLQVFKAETGEKLLDIK--AHEDEVLCCAFS-SDDSYIATCSADKKVKIWDSATGKLVH 693 (1249)
T ss_dssp EEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEEEEC--CCSSCEEEEEEC-TTSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred EEEEEECC-CCCEEEEEeCCCeEEEEECCCCCEEEEec--cCCCCEEEEEEe-cCCCEEEEEeCCCeEEEEECCCCceEE
Confidence 99999999 99999999999999999999999988887 899999999998 789999999999999999999875421
Q ss_pred cccccCCceeEecCCCCeEEEEEccC--CCEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEe
Q 003822 536 RGMHYGAGTVTFDEFDQLTSVHVNSM--DELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSS 613 (793)
Q Consensus 536 ~~~~~~~~~~~~~~~~~V~sv~~s~~--~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs 613 (793)
....|...|.+++|+++ ...+++++.||.|++||+.+++.+..+. +|.+.|++++|+|++ .++++|+
T Consensus 694 ---------~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~-~h~~~v~~~~~sp~~-~~l~s~s 762 (1249)
T 3sfz_A 694 ---------TYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMF-GHTNSVNHCRFSPDD-ELLASCS 762 (1249)
T ss_dssp ---------EEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEEC-CCSSCEEEEEECSST-TEEEEEE
T ss_pred ---------EEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheec-CCCCCEEEEEEecCC-CEEEEEE
Confidence 12245678999999884 4467778899999999999999999998 699999999999999 8999999
Q ss_pred CCCeEEEEECCCCCccceEEccC------------CCCeEEEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCC
Q 003822 614 FDQDVKLWDLRQKPIQPCYTASS------------SKGNVMVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATG 681 (793)
Q Consensus 614 ~Dg~IrIWDlrt~~~~~~~~l~~------------~~~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~ 681 (793)
.||+|++||++++.......... ...+.+++|+|+|+.+++++ ++.+.+||+.++.....+. ..+
T Consensus 763 ~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-~~~v~~~d~~~~~~~~~~~--~~~ 839 (1249)
T 3sfz_A 763 ADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-KNKVLLFDIHTSGLLAEIH--TGH 839 (1249)
T ss_dssp SSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-TTEEEEEETTTCCEEEEEE--CSS
T ss_pred CCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc-CCcEEEEEecCCCceeEEc--CCC
Confidence 99999999998874333322111 11233589999999999988 7899999999999877664 356
Q ss_pred CCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCCCCccceeeeccCCccccCCccEEEEEEcCCCCc
Q 003822 682 SSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKS 761 (793)
Q Consensus 682 ~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~~~ 761 (793)
...+..++|+|++. ++++|+.||.| ++||+.+++.+. .+.+|. ..|.+++|+|+ ..
T Consensus 840 ~~~v~~~~~sp~~~-~l~~~~~dg~v-~vwd~~~~~~~~--~~~~h~-------------------~~v~~v~~spd-g~ 895 (1249)
T 3sfz_A 840 HSTIQYCDFSPYDH-LAVIALSQYCV-ELWNIDSRLKVA--DCRGHL-------------------SWVHGVMFSPD-GS 895 (1249)
T ss_dssp SSCCCEEEECSSTT-EEEEECSSSCE-EEEETTTTEEEE--EECCCS-------------------SCEEEEEECTT-SS
T ss_pred CCceEEEEEcCCCC-EEEEEeCCCeE-EEEEcCCCceee--ecCCCc-------------------cceEEEEECCC-CC
Confidence 67899999999999 99999999999 999999999888 666554 57999999995 44
Q ss_pred eeeEeeEEEeCCCcEEEEcCC
Q 003822 762 EIVKVNLLASTDHCDKECSHG 782 (793)
Q Consensus 762 ~iv~~~ltaS~Dg~VkvW~~~ 782 (793)
.++ +++.||+|++|+..
T Consensus 896 ~l~----s~s~dg~v~vw~~~ 912 (1249)
T 3sfz_A 896 SFL----TASDDQTIRVWETK 912 (1249)
T ss_dssp EEE----EEETTSCEEEEEHH
T ss_pred EEE----EEeCCCeEEEEEcc
Confidence 566 89999999999864
No 74
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=5.6e-29 Score=306.31 Aligned_cols=237 Identities=11% Similarity=0.121 Sum_probs=190.1
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcc
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSI 535 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~ 535 (793)
|++++|+| ++.+||+|+.||+|+||+..+.+....+ .|...|.+++|+ + +++|++++.|++|++||+++++.
T Consensus 20 V~~lafsp-dg~~lAsgs~Dg~I~lw~~~~~~~~~~~---~~~~~V~~l~fs-p-g~~L~S~s~D~~v~lWd~~~~~~-- 91 (902)
T 2oaj_A 20 PIAAAFDF-TQNLLAIATVTGEVHIYGQQQVEVVIKL---EDRSAIKEMRFV-K-GIYLVVINAKDTVYVLSLYSQKV-- 91 (902)
T ss_dssp EEEEEEET-TTTEEEEEETTSEEEEECSTTCEEEEEC---SSCCCEEEEEEE-T-TTEEEEEETTCEEEEEETTTCSE--
T ss_pred cEEEEECC-CCCEEEEEeCCCEEEEEeCCCcEEEEEc---CCCCCEEEEEEc-C-CCEEEEEECcCeEEEEECCCCcE--
Confidence 99999999 9999999999999999999887765543 578899999998 4 77999999999999999998654
Q ss_pred cccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEE-----------EEEcccCCCCeEEEEEcCC
Q 003822 536 RGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRL-----------QVFADMHKEHINVVKFSNH 604 (793)
Q Consensus 536 ~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l-----------~~~~~gh~~~V~sv~fspd 604 (793)
...+.+...|++++|+|++.++++++.||+|++||+++++.. ..+. +|.++|++++|+|+
T Consensus 92 --------~~~~~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~-~h~~~V~sl~~sp~ 162 (902)
T 2oaj_A 92 --------LTTVFVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPA-ARLSPIVSIQWNPR 162 (902)
T ss_dssp --------EEEEECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSS-SCCCCCCEEEEETT
T ss_pred --------EEEEcCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccc-cCCCCeEEEEEccC
Confidence 223345678999999999999999999999999999988764 1223 69999999999997
Q ss_pred CCcEEEEEeCCCeEEEEECCCCCccceEEccCC-------------------CCeEEEEEecCCCEEEEEeCCCeEEEEE
Q 003822 605 SPSIFATSSFDQDVKLWDLRQKPIQPCYTASSS-------------------KGNVMVCFSPDDHYLLVSAVDNEVRQLL 665 (793)
Q Consensus 605 g~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~-------------------~~~vsv~fSpdg~~Lasgs~Dg~I~IwD 665 (793)
+...+++|+.||.| +||+++++.. ..+..+ ..+.+++|+|+|++|++|+.||.|++||
T Consensus 163 ~~~~l~~g~~dg~v-lWd~~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd 239 (902)
T 2oaj_A 163 DIGTVLISYEYVTL-TYSLVENEIK--QSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWD 239 (902)
T ss_dssp EEEEEEEECSSCEE-EEETTTTEEE--EEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEE
T ss_pred CCCEEEEEeCCCcE-EEECCCCceE--EEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Confidence 55789999999999 9999987433 333333 3456799999999999999999999999
Q ss_pred cCCCcEEEEEee-----ec----------CCCCCcEEEEEee----CCCeEEEEEeCCC-----cEEEEEEc
Q 003822 666 AVDGRVHLNFGI-----TA----------TGSSQNYTRSYYL----NGRDYIVSGSCDE-----HVVRICCA 713 (793)
Q Consensus 666 l~tg~~~~~l~~-----~~----------~~~~~v~s~afsp----dg~~~L~Sgs~Dg-----~II~IWDv 713 (793)
+.+++++..... +. .+...+..++|++ ++..++++|+.|. .+ ++|++
T Consensus 240 ~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v-~~~~~ 310 (902)
T 2oaj_A 240 ANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSL-TMIDL 310 (902)
T ss_dssp TTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCE-EEEEE
T ss_pred CCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceE-EEEec
Confidence 999987654221 10 1223588889965 3334777777663 66 78874
No 75
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.97 E-value=1.4e-28 Score=276.86 Aligned_cols=268 Identities=18% Similarity=0.254 Sum_probs=215.9
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcc
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSI 535 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~ 535 (793)
|++++| +++++++|+.||+|++||+.+++....+. +|.+.|.+++| +++++++|+.||+|++||+.+++...
T Consensus 136 v~~~~~---d~~~l~~g~~dg~i~iwd~~~~~~~~~~~--~h~~~v~~l~~---~~~~l~sg~~dg~i~vwd~~~~~~~~ 207 (435)
T 1p22_A 136 VYCLQY---DDQKIVSGLRDNTIKIWDKNTLECKRILT--GHTGSVLCLQY---DERVIITGSSDSTVRVWDVNTGEMLN 207 (435)
T ss_dssp EEEEEC---CSSEEEEEESSSCEEEEESSSCCEEEEEC--CCSSCEEEEEC---CSSEEEEEETTSCEEEEESSSCCEEE
T ss_pred EEEEEE---CCCEEEEEeCCCeEEEEeCCCCeEEEEEc--CCCCcEEEEEE---CCCEEEEEcCCCeEEEEECCCCcEEE
Confidence 777776 56899999999999999999999988876 89999999997 67899999999999999999875421
Q ss_pred cccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEE---EEEcccCCCCeEEEEEcCCCCcEEEEE
Q 003822 536 RGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRL---QVFADMHKEHINVVKFSNHSPSIFATS 612 (793)
Q Consensus 536 ~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l---~~~~~gh~~~V~sv~fspdg~~~LaTg 612 (793)
....|...|.+++|+ ++.+++++.||.|++||+.+++.. ..+. +|...|.+++| ++ .++++|
T Consensus 208 ---------~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~-~~~~~v~~~~~--~~-~~l~s~ 272 (435)
T 1p22_A 208 ---------TLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLV-GHRAAVNVVDF--DD-KYIVSA 272 (435)
T ss_dssp ---------EECCCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEEC-CCSSCEEEEEE--ET-TEEEEE
T ss_pred ---------EEcCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEec-CCCCcEEEEEe--CC-CEEEEE
Confidence 112355779999984 569999999999999999987755 5555 79999999999 45 799999
Q ss_pred eCCCeEEEEECCCCCccceEEccCCCCeE-EEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEe
Q 003822 613 SFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYY 691 (793)
Q Consensus 613 s~Dg~IrIWDlrt~~~~~~~~l~~~~~~v-sv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afs 691 (793)
+.||.|++||+++++ .+..+.+|...+ ++.| +++++++|+.||.|++||+.+++.+..+. .+...+..++|
T Consensus 273 ~~dg~i~vwd~~~~~--~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~---~h~~~v~~~~~- 344 (435)
T 1p22_A 273 SGDRTIKVWNTSTCE--FVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLE---GHEELVRCIRF- 344 (435)
T ss_dssp ETTSEEEEEETTTCC--EEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEEC---CCSSCEEEEEC-
T ss_pred eCCCeEEEEECCcCc--EEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEe---CCcCcEEEEEe-
Confidence 999999999999884 445555666555 4777 57899999999999999999999988875 35566777777
Q ss_pred eCCCeEEEEEeCCCcEEEEEEcCCCc---------EEEeeeecCCCCCccceeeeccCCccccCCccEEEEEEcCCCCce
Q 003822 692 LNGRDYIVSGSCDEHVVRICCAQTGR---------RLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKSE 762 (793)
Q Consensus 692 pdg~~~L~Sgs~Dg~II~IWDv~tg~---------~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~~~~ 762 (793)
++. +|++|+.||.| ++||+.+++ .+. .+. +|.+.|.+++|++. .
T Consensus 345 -~~~-~l~sg~~dg~i-~vwd~~~~~~~~~~~~~~~~~--~~~-------------------~h~~~v~~l~~~~~---~ 397 (435)
T 1p22_A 345 -DNK-RIVSGAYDGKI-KVWDLVAALDPRAPAGTLCLR--TLV-------------------EHSGRVFRLQFDEF---Q 397 (435)
T ss_dssp -CSS-EEEEEETTSCE-EEEEHHHHTSTTSCTTTTEEE--EEC-------------------CCSSCCCCEEECSS---C
T ss_pred -cCC-EEEEEeCCCcE-EEEECCCCCCccccccchhee--ecc-------------------CCCCCeEEEEeCCC---E
Confidence 666 99999999999 999998766 444 333 44567888999543 3
Q ss_pred eeEeeEEEeCCCcEEEEcCCCCC
Q 003822 763 IVKVNLLASTDHCDKECSHGQHS 785 (793)
Q Consensus 763 iv~~~ltaS~Dg~VkvW~~~~~~ 785 (793)
++ +|+.||+|++|+.....
T Consensus 398 l~----s~s~Dg~i~iwd~~~~~ 416 (435)
T 1p22_A 398 IV----SSSHDDTILIWDFLNDP 416 (435)
T ss_dssp EE----ECCSSSEEEEEC-----
T ss_pred EE----EEeCCCEEEEEECCCCC
Confidence 45 89999999999986654
No 76
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.97 E-value=1.7e-28 Score=273.09 Aligned_cols=245 Identities=14% Similarity=0.240 Sum_probs=208.7
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcc
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSI 535 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~ 535 (793)
|++++|+| ++.+|++|+.||.|++||+.+++.+..+. +|...|.+++|. ++.+++|+.||.|++||++......
T Consensus 137 v~~v~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~ 210 (401)
T 4aez_A 137 VASVKWSH-DGSFLSVGLGNGLVDIYDVESQTKLRTMA--GHQARVGCLSWN---RHVLSSGSRSGAIHHHDVRIANHQI 210 (401)
T ss_dssp EEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEEEEC--CCSSCEEEEEEE---TTEEEEEETTSEEEEEETTSSSCEE
T ss_pred EEEEEECC-CCCEEEEECCCCeEEEEECcCCeEEEEec--CCCCceEEEEEC---CCEEEEEcCCCCEEEEecccCccee
Confidence 99999999 99999999999999999999999888877 899999999994 5799999999999999998644322
Q ss_pred cccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEe--
Q 003822 536 RGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSS-- 613 (793)
Q Consensus 536 ~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs-- 613 (793)
. ....|...|.+++|+|++..+++++.||.|++||+++++.+..+. +|...|.+++|+|+++.++++|+
T Consensus 211 ~--------~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~-~~~~~v~~~~~~p~~~~ll~~~~gs 281 (401)
T 4aez_A 211 G--------TLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKT-NHNAAVKAVAWCPWQSNLLATGGGT 281 (401)
T ss_dssp E--------EEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEEC-CCSSCCCEEEECTTSTTEEEEECCT
T ss_pred e--------EEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEec-CCcceEEEEEECCCCCCEEEEecCC
Confidence 1 123456789999999999999999999999999999999999998 69999999999998878888876
Q ss_pred CCCeEEEEECCCCCccceEEccCCCCeEEEEEecCCCEEEEEe--CCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEe
Q 003822 614 FDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLVSA--VDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYY 691 (793)
Q Consensus 614 ~Dg~IrIWDlrt~~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs--~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afs 691 (793)
.|+.|++||++++.. ...+..+..+.+++|+|+|+++++++ .||.|++||+.+++....... ..+...+..++|+
T Consensus 282 ~d~~i~i~d~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~-~~h~~~v~~~~~s 358 (401)
T 4aez_A 282 MDKQIHFWNAATGAR--VNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDI-PAHDTRVLYSALS 358 (401)
T ss_dssp TTCEEEEEETTTCCE--EEEEECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEE-ECCSSCCCEEEEC
T ss_pred CCCEEEEEECCCCCE--EEEEeCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEe-cCCCCCEEEEEEC
Confidence 799999999998854 44445555677799999999999954 899999999999876655443 3466789999999
Q ss_pred eCCCeEEEEEeCCCcEEEEEEcCCCcEEE
Q 003822 692 LNGRDYIVSGSCDEHVVRICCAQTGRRLR 720 (793)
Q Consensus 692 pdg~~~L~Sgs~Dg~II~IWDv~tg~~l~ 720 (793)
|+|. +|++|+.||.| ++|++.+++.+.
T Consensus 359 ~dg~-~l~s~~~dg~i-~iw~~~~~~~~~ 385 (401)
T 4aez_A 359 PDGR-ILSTAASDENL-KFWRVYDGDHVK 385 (401)
T ss_dssp TTSS-EEEEECTTSEE-EEEECCC-----
T ss_pred CCCC-EEEEEeCCCcE-EEEECCCCcccc
Confidence 9999 99999999999 999999999887
No 77
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.2e-28 Score=268.07 Aligned_cols=250 Identities=15% Similarity=0.161 Sum_probs=202.5
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCC--eEEEEEeccCCCCCEEEEEEeeC-CCCEEEEEEcCCcEEEEEcCCCC
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENE--NIVSYIPSFGAMNSVLGLCWLKK-YPSKLIAGSDNGSLKLYDIRHMP 532 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~--~~i~~l~~~~h~~~V~sv~fs~~-~g~~Lasgs~DgtV~vWDl~~~~ 532 (793)
|++++|+| ++++|++|+.||.|+|||+..+ +.+..+. +|...|++++|+++ ++++|++|+.||.|++||+.+++
T Consensus 14 v~~~~~s~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~ 90 (379)
T 3jrp_A 14 IHDAVLDY-YGKRLATCSSDKTIKIFEVEGETHKLIDTLT--GHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGR 90 (379)
T ss_dssp EEEEEECS-SSSEEEEEETTSCEEEEEEETTEEEEEEEEC--CCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTE
T ss_pred EEEEEEcC-CCCEEEEEECCCcEEEEecCCCcceeeeEec--CCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCc
Confidence 99999999 8999999999999999999844 4444554 89999999999743 28999999999999999998864
Q ss_pred CcccccccCCceeEecCCCCeEEEEEccC--CCEEEEEECCCcEEEEECCCCc--EEEEEcccCCCCeEEEEEcC-----
Q 003822 533 PSIRGMHYGAGTVTFDEFDQLTSVHVNSM--DELFLASGYSKNIALYDINSGR--RLQVFADMHKEHINVVKFSN----- 603 (793)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~~V~sv~~s~~--~~~lla~g~Dg~I~IWDl~tg~--~l~~~~~gh~~~V~sv~fsp----- 603 (793)
.... .....|...|.+++|+|. +..+++++.|+.|++||++++. ....+. +|...|++++|+|
T Consensus 91 ~~~~-------~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~ 162 (379)
T 3jrp_A 91 WSQI-------AVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIID-AHAIGVNSASWAPATIEE 162 (379)
T ss_dssp EEEE-------EEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEE-CCTTCEEEEEECCCC---
T ss_pred eeEe-------eeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEec-CCCCceEEEEEcCccccc
Confidence 2110 112235678999999998 8899999999999999999873 344555 6999999999999
Q ss_pred --------CCCcEEEEEeCCCeEEEEECCCCCcc--ceEEccCCCCeE-EEEEecC---CCEEEEEeCCCeEEEEEcCCC
Q 003822 604 --------HSPSIFATSSFDQDVKLWDLRQKPIQ--PCYTASSSKGNV-MVCFSPD---DHYLLVSAVDNEVRQLLAVDG 669 (793)
Q Consensus 604 --------dg~~~LaTgs~Dg~IrIWDlrt~~~~--~~~~l~~~~~~v-sv~fSpd---g~~Lasgs~Dg~I~IwDl~tg 669 (793)
++ .++++|+.||.|++||++++... ....+.+|...+ +++|+|+ +++|++++.||.|++||+.++
T Consensus 163 ~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~ 241 (379)
T 3jrp_A 163 DGEHNGTKES-RKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNE 241 (379)
T ss_dssp -------CTT-CEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESST
T ss_pred cccccCCCCC-CEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCC
Confidence 46 89999999999999999876432 344566666655 5999999 899999999999999999987
Q ss_pred cEE--EEEeeecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEE
Q 003822 670 RVH--LNFGITATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRL 719 (793)
Q Consensus 670 ~~~--~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l 719 (793)
... ........+...+..++|+|+|. +|++++.||.| ++|++.++...
T Consensus 242 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~~dg~i-~iw~~~~~~~~ 291 (379)
T 3jrp_A 242 QGPWKKTLLKEEKFPDVLWRASWSLSGN-VLALSGGDNKV-TLWKENLEGKW 291 (379)
T ss_dssp TSCCEEEESSSSCCSSCEEEEEECSSSC-CEEEEESSSSE-EEEEEEETTEE
T ss_pred CccceeeeeccccCCCcEEEEEEcCCCC-EEEEecCCCcE-EEEeCCCCCcc
Confidence 421 22222223566789999999999 99999999999 99999865443
No 78
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.97 E-value=2.3e-28 Score=264.30 Aligned_cols=279 Identities=11% Similarity=0.168 Sum_probs=218.1
Q ss_pred eEEEEEeCCC--CCEEEEEeCCCeEEEEECCC-CeEE-EEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCC
Q 003822 456 PRQFEYHPSI--SCLMVFGTLDGEIVVVNHEN-ENIV-SYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHM 531 (793)
Q Consensus 456 V~~vafsP~d--~~~Lasgs~DG~I~VWd~~t-~~~i-~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~ 531 (793)
|++++|+|.. +.+|++|+.||.|++||+.+ +..+ ..+. +|...|.+++|+ +++++|++|+.||.|++||++++
T Consensus 42 v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~--~h~~~v~~~~~~-~~~~~l~s~~~dg~v~iwd~~~~ 118 (368)
T 3mmy_A 42 IGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQ--MHTGPVLDVCWS-DDGSKVFTASCDKTAKMWDLSSN 118 (368)
T ss_dssp EEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEE--ECSSCEEEEEEC-TTSSEEEEEETTSEEEEEETTTT
T ss_pred eEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEec--cccCCEEEEEEC-cCCCEEEEEcCCCcEEEEEcCCC
Confidence 9999999943 69999999999999999987 5444 4444 799999999998 69999999999999999999986
Q ss_pred CCcccccccCCceeEecCCCCeEEEEE--ccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEE
Q 003822 532 PPSIRGMHYGAGTVTFDEFDQLTSVHV--NSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIF 609 (793)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~V~sv~~--s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~L 609 (793)
+. .....|...|.+++| ++++..+++++.||.|++||+++++.+..+. .| ..+.++.+.+ ..+
T Consensus 119 ~~----------~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~~-~~~~~~~~~~---~~~ 183 (368)
T 3mmy_A 119 QA----------IQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQ-LP-ERCYCADVIY---PMA 183 (368)
T ss_dssp EE----------EEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEE-CS-SCEEEEEEET---TEE
T ss_pred Cc----------eeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEe-cC-CCceEEEecC---Cee
Confidence 53 223457788999999 7888889999999999999999999999988 34 4677777764 468
Q ss_pred EEEeCCCeEEEEECCCCCccceEEccCC-CCeEEEEEecCCCE----EEEEeCCCeEEEEEcCCC---cEEEEEeeecCC
Q 003822 610 ATSSFDQDVKLWDLRQKPIQPCYTASSS-KGNVMVCFSPDDHY----LLVSAVDNEVRQLLAVDG---RVHLNFGITATG 681 (793)
Q Consensus 610 aTgs~Dg~IrIWDlrt~~~~~~~~l~~~-~~~vsv~fSpdg~~----Lasgs~Dg~I~IwDl~tg---~~~~~l~~~~~~ 681 (793)
++++.++.+++||++............. .....+.+.+++.. +++++.||.|++||+... .....+..+...
T Consensus 184 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~ 263 (368)
T 3mmy_A 184 VVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSN 263 (368)
T ss_dssp EEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC
T ss_pred EEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecc
Confidence 8889999999999987643222211111 22334666665544 999999999999999987 444555422110
Q ss_pred ---------CCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCCCCccceeeeccCCccccCCccEEE
Q 003822 682 ---------SSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILA 752 (793)
Q Consensus 682 ---------~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~s 752 (793)
...+..++|+|++. +|++|+.||.| ++||+.+++.+. .+.+|. ..|.+
T Consensus 264 ~~~~~~~~~~~~v~~~~~sp~~~-~l~s~~~dg~i-~iwd~~~~~~~~--~~~~~~-------------------~~v~~ 320 (368)
T 3mmy_A 264 GTNTSAPQDIYAVNGIAFHPVHG-TLATVGSDGRF-SFWDKDARTKLK--TSEQLD-------------------QPISA 320 (368)
T ss_dssp ----CCCEEECCEEEEEECTTTC-CEEEEETTSCE-EEEETTTTEEEE--ECCCCS-------------------SCEEE
T ss_pred cccccccccccceEEEEEecCCC-EEEEEccCCeE-EEEECCCCcEEE--EecCCC-------------------CCceE
Confidence 11588999999998 99999999999 999999999988 665554 57999
Q ss_pred EEEcCCCCceeeEeeEEEeCCCcEEEEc
Q 003822 753 AYTRPSSKSEIVKVNLLASTDHCDKECS 780 (793)
Q Consensus 753 va~~P~~~~~iv~~~ltaS~Dg~VkvW~ 780 (793)
++|+|+ ...++ +||.|+..+.|+
T Consensus 321 ~~~s~~-g~~l~----~~s~d~~~~~~~ 343 (368)
T 3mmy_A 321 CCFNHN-GNIFA----YASSYDWSKGHE 343 (368)
T ss_dssp EEECTT-SSCEE----EEECCCSTTCGG
T ss_pred EEECCC-CCeEE----EEeccccccccc
Confidence 999996 44555 788887555555
No 79
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.97 E-value=6.2e-28 Score=270.42 Aligned_cols=244 Identities=14% Similarity=0.206 Sum_probs=210.0
Q ss_pred ceEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCc
Q 003822 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS 534 (793)
Q Consensus 455 ~V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~ 534 (793)
.|++|+|+| ++++||+|+.||+|+|||+++++.+..+. +|...|.+++|. +..+++|+.|+.+++||.......
T Consensus 149 ~V~sv~fsp-dg~~lasgs~Dg~v~iWd~~~~~~~~~~~--~h~~~v~~~s~~---~~~l~sgs~d~~i~~~d~~~~~~~ 222 (420)
T 4gga_A 149 YISSVAWIK-EGNYLAVGTSSAEVQLWDVQQQKRLRNMT--SHSARVGSLSWN---SYILSSGSRSGHIHHHDVRVAEHH 222 (420)
T ss_dssp CEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEEC--CCSSCEEEEEEE---TTEEEEEETTSEEEEEETTSSSCE
T ss_pred cEEEEEECC-CCCEEEEEECCCeEEEEEcCCCcEEEEEe--CCCCceEEEeeC---CCEEEEEeCCCceeEeeeccccee
Confidence 399999999 99999999999999999999999988876 899999999874 679999999999999999875543
Q ss_pred ccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCc----EEEEEcccCCCCeEEEEEcCCCCcEEE
Q 003822 535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGR----RLQVFADMHKEHINVVKFSNHSPSIFA 610 (793)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~----~l~~~~~gh~~~V~sv~fspdg~~~La 610 (793)
... ...|...+..+.+++.+..+++++.|+.+++||..+++ .+.... .|...|.+++|+|.++.+++
T Consensus 223 ~~~--------~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~-~~~~~V~~~~~~p~~~~~la 293 (420)
T 4gga_A 223 VAT--------LSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFT-QHQGAVKAVAWCPWQSNVLA 293 (420)
T ss_dssp EEE--------EECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEEC-CCSSCEEEEEECTTCTTEEE
T ss_pred eEE--------ecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeec-ccCCceeeeeeCCCcccEEE
Confidence 222 23455789999999999999999999999999998765 345555 59999999999999878887
Q ss_pred EE--eCCCeEEEEECCCCCccceEEccCCCCeEEEEEecCCCEEEEEe--CCCeEEEEEcCCCcEEEEEeeecCCCCCcE
Q 003822 611 TS--SFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLVSA--VDNEVRQLLAVDGRVHLNFGITATGSSQNY 686 (793)
Q Consensus 611 Tg--s~Dg~IrIWDlrt~~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs--~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~ 686 (793)
++ +.|++|++||++++. ....+..+..+.++.|+|+++.+++++ .|+.|++||+.+++++.++. .|...|.
T Consensus 294 ~~~gs~D~~I~iwd~~t~~--~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~---gH~~~V~ 368 (420)
T 4gga_A 294 TGGGTSDRHIRIWNVCSGA--CLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELK---GHTSRVL 368 (420)
T ss_dssp EEECTTTCEEEEEETTTTE--EEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEEC---CCSSCEE
T ss_pred EEeecCCCEEEEEeCCccc--cceeeccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEc---CCCCCEE
Confidence 65 479999999999984 445556677888899999999998876 68999999999999998886 4667899
Q ss_pred EEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEE
Q 003822 687 TRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRLR 720 (793)
Q Consensus 687 s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~ 720 (793)
.++|+|+|. +|+||+.|++| +|||+......+
T Consensus 369 ~l~~spdg~-~l~S~s~D~tv-riWdv~~~~~~~ 400 (420)
T 4gga_A 369 SLTMSPDGA-TVASAAADETL-RLWRCFELDPAR 400 (420)
T ss_dssp EEEECTTSS-CEEEEETTTEE-EEECCSCSSCC-
T ss_pred EEEEcCCCC-EEEEEecCCeE-EEEECCCCCccc
Confidence 999999999 99999999999 999998776655
No 80
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.97 E-value=3.8e-28 Score=290.11 Aligned_cols=242 Identities=15% Similarity=0.224 Sum_probs=203.0
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcc
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSI 535 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~ 535 (793)
|++++|+| ++++|++|+.||+|+|||+.+++....+. +|...|.+++|+ +++++|++|+.|++|++||........
T Consensus 433 v~~v~~s~-~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~--~h~~~v~~~~~s-~~~~~l~s~s~D~~i~iwd~~~~~~~~ 508 (694)
T 3dm0_A 433 VEDVVLSS-DGQFALSGSWDGELRLWDLAAGVSTRRFV--GHTKDVLSVAFS-LDNRQIVSASRDRTIKLWNTLGECKYT 508 (694)
T ss_dssp EEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEE--CCSSCEEEEEEC-TTSSCEEEEETTSCEEEECTTSCEEEE
T ss_pred EEEEEECC-CCCEEEEEeCCCcEEEEECCCCcceeEEe--CCCCCEEEEEEe-CCCCEEEEEeCCCEEEEEECCCCccee
Confidence 89999999 99999999999999999999999888776 899999999998 789999999999999999986532210
Q ss_pred cccccCCceeEecCCCCeEEEEEccCC--CEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEe
Q 003822 536 RGMHYGAGTVTFDEFDQLTSVHVNSMD--ELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSS 613 (793)
Q Consensus 536 ~~~~~~~~~~~~~~~~~V~sv~~s~~~--~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs 613 (793)
. .. ....|...|.+++|+|++ ..+++++.|++|++||+++++....+. +|.+.|++++|+|++ .+|++|+
T Consensus 509 ~-~~-----~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~-~h~~~v~~v~~spdg-~~l~sg~ 580 (694)
T 3dm0_A 509 I-SE-----GGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLA-GHTGYVSTVAVSPDG-SLCASGG 580 (694)
T ss_dssp E-CS-----STTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTS-SEEEEEE
T ss_pred e-cc-----CCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEc-CCCCCEEEEEEeCCC-CEEEEEe
Confidence 0 00 011355779999999876 578888999999999999999999998 799999999999999 8999999
Q ss_pred CCCeEEEEECCCCCccceEEccCCCCeEEEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCC------------
Q 003822 614 FDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATG------------ 681 (793)
Q Consensus 614 ~Dg~IrIWDlrt~~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~------------ 681 (793)
.||+|++||++++ ..+..+..+..+.+++|+|++.++++++ ++.|++||+.+++.+..+......
T Consensus 581 ~Dg~i~iwd~~~~--~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 657 (694)
T 3dm0_A 581 KDGVVLLWDLAEG--KKLYSLEANSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAA 657 (694)
T ss_dssp TTSBCEEEETTTT--EEEECCBCSSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC-------------
T ss_pred CCCeEEEEECCCC--ceEEEecCCCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhcccccccccccccccccc
Confidence 9999999999987 4455666666666799999999888776 667999999999988776532111
Q ss_pred ----CCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcC
Q 003822 682 ----SSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQ 714 (793)
Q Consensus 682 ----~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~ 714 (793)
...+.+++|+|+|+ +|++|+.||.| +||++.
T Consensus 658 ~~~~~~~~~~l~~spdg~-~l~sgs~Dg~i-~iW~i~ 692 (694)
T 3dm0_A 658 TKRKVIYCTSLNWSADGS-TLFSGYTDGVI-RVWGIG 692 (694)
T ss_dssp ---CCCCEEEEEECTTSS-EEEEEETTSEE-EEEEC-
T ss_pred CCceeEEeeeEEEcCCCC-EEEEEcCCCeE-EEEecc
Confidence 11256789999999 99999999999 999985
No 81
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.96 E-value=4.8e-29 Score=269.88 Aligned_cols=246 Identities=14% Similarity=0.143 Sum_probs=199.6
Q ss_pred ceEEEEEeCCC----CCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCC
Q 003822 455 RPRQFEYHPSI----SCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRH 530 (793)
Q Consensus 455 ~V~~vafsP~d----~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~ 530 (793)
.|++++|+| + +.+|++|+.||.|++||+.+++.+..+. +|...|.+++|+|.++++|++|+.||.|++||+++
T Consensus 71 ~v~~~~~~~-~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 147 (366)
T 3k26_A 71 NFYTCAWTY-DSNTSHPLLAVAGSRGIIRIINPITMQCIKHYV--GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT 147 (366)
T ss_dssp CEEEEEEEE-CTTTCCEEEEEEETTCEEEEECTTTCCEEEEEE--SCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTT
T ss_pred cEEEEEecc-CCCCCCCEEEEecCCCEEEEEEchhceEeeeec--CCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeec
Confidence 399999999 5 5699999999999999999999988877 89999999999844899999999999999999987
Q ss_pred CCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEc---------------------
Q 003822 531 MPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFA--------------------- 589 (793)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~--------------------- 589 (793)
++....... ...|...|.+++|+|++..+++++.||.|++||+++++....+.
T Consensus 148 ~~~~~~~~~------~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (366)
T 3k26_A 148 DTLVAIFGG------VEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHF 221 (366)
T ss_dssp TEEEEEECS------TTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECC
T ss_pred CeEEEEecc------cccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeecc
Confidence 654111000 02456789999999999999999999999999999876543322
Q ss_pred ------ccCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEECCCCCc------------cceEEccCCCCeE-EEEEecC--
Q 003822 590 ------DMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPI------------QPCYTASSSKGNV-MVCFSPD-- 648 (793)
Q Consensus 590 ------~gh~~~V~sv~fspdg~~~LaTgs~Dg~IrIWDlrt~~~------------~~~~~l~~~~~~v-sv~fSpd-- 648 (793)
.+|...|.+++|+ + .++++++.||.|++||+++... ..+..+..|...+ +++|+|+
T Consensus 222 ~~~~~~~~~~~~v~~~~~~--~-~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 298 (366)
T 3k26_A 222 PDFSTRDIHRNYVDCVRWL--G-DLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFW 298 (366)
T ss_dssp CSEEECSSCSSCCCEEEEE--T-TEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTT
T ss_pred CccccccCCcceEEEEEEc--C-CEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCC
Confidence 1399999999998 4 6999999999999999987643 2344455555444 5899999
Q ss_pred CCEEEEEeCCCeEEEEEcCCCcE----EEEEeeecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCC
Q 003822 649 DHYLLVSAVDNEVRQLLAVDGRV----HLNFGITATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQT 715 (793)
Q Consensus 649 g~~Lasgs~Dg~I~IwDl~tg~~----~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~t 715 (793)
|++|++|+.||.|++||+.+++. ...+.. ..+...+..++|+|+++ +|++|+.||.| ++||+.+
T Consensus 299 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~-~l~s~~~dg~i-~iwd~~~ 366 (366)
T 3k26_A 299 QKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTH-HKCGAAIRQTSFSRDSS-ILIAVCDDASI-WRWDRLR 366 (366)
T ss_dssp SSEEEEECTTSCEEEEECCSSSGGGCEEEEECC-TTCCSCEEEEEECTTSS-EEEEEETTSEE-EEEEC--
T ss_pred CcEEEEEecCCcEEEEECCCCCCccccceEEcc-cccCCceEEEEeCCCCC-eEEEEeCCCEE-EEEEecC
Confidence 99999999999999999998753 334431 11257899999999999 99999999999 9999864
No 82
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.96 E-value=2.3e-27 Score=254.64 Aligned_cols=244 Identities=16% Similarity=0.263 Sum_probs=202.2
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcc
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSI 535 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~ 535 (793)
|++++|+| ++++|++|+.||.|++|+...+....... .+...+..+.+. +.+++|++|+.|+.+++||+.......
T Consensus 89 V~~~~~s~-dg~~l~s~~~d~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~l~s~s~d~~~~~~d~~~~~~~~ 164 (340)
T 4aow_A 89 VSDVVISS-DGQFALSGSWDGTLRLWDLTTGTTTRRFV--GHTKDVLSVAFS-SDNRQIVSGSRDKTIKLWNTLGVCKYT 164 (340)
T ss_dssp EEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEE--CCSSCEEEEEEC-TTSSCEEEEETTSCEEEECTTSCEEEE
T ss_pred EEEEEECC-CCCEEEEEcccccceEEeecccceeeeec--CCCCceeEEEEe-ecCccceeecCCCeEEEEEeCCCceEE
Confidence 99999999 99999999999999999999888777666 667788888886 788999999999999999987644321
Q ss_pred cccccCCceeEecCCCCeEEEEEccCC--CEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEe
Q 003822 536 RGMHYGAGTVTFDEFDQLTSVHVNSMD--ELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSS 613 (793)
Q Consensus 536 ~~~~~~~~~~~~~~~~~V~sv~~s~~~--~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs 613 (793)
.. ...|...+..++|++.+ ..+++++.|+.|++||+++++.+..+. +|.+.|++++|+|++ .+|++|+
T Consensus 165 ~~--------~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~-~h~~~v~~~~~s~~~-~~l~s~s 234 (340)
T 4aow_A 165 VQ--------DESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHI-GHTGYLNTVTVSPDG-SLCASGG 234 (340)
T ss_dssp EC--------SSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEECTTS-SEEEEEE
T ss_pred EE--------eccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEec-CCCCcEEEEEECCCC-CEEEEEe
Confidence 11 12345678889987654 456777889999999999999999998 699999999999999 8999999
Q ss_pred CCCeEEEEECCCCCccceEEccCCCCeEEEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEee------ecCCCCCcEE
Q 003822 614 FDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGI------TATGSSQNYT 687 (793)
Q Consensus 614 ~Dg~IrIWDlrt~~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~------~~~~~~~v~s 687 (793)
.||.|++||+++. .++..+.++..+..++|+|++.++ +++.|+.|++||+.++..+..+.. ...+...+..
T Consensus 235 ~Dg~i~iwd~~~~--~~~~~~~~~~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 311 (340)
T 4aow_A 235 KDGQAMLWDLNEG--KHLYTLDGGDIINALCFSPNRYWL-CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTS 311 (340)
T ss_dssp TTCEEEEEETTTT--EEEEEEECSSCEEEEEECSSSSEE-EEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEE
T ss_pred CCCeEEEEEeccC--ceeeeecCCceEEeeecCCCCcee-eccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEE
Confidence 9999999999987 445566667677789999988755 555699999999999887766642 1235567899
Q ss_pred EEEeeCCCeEEEEEeCCCcEEEEEEcCCCcE
Q 003822 688 RSYYLNGRDYIVSGSCDEHVVRICCAQTGRR 718 (793)
Q Consensus 688 ~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~ 718 (793)
++|+|+|+ +|++|+.||.| +|||+.+|.+
T Consensus 312 l~~s~dg~-~l~sgs~Dg~v-~iW~~~tGtr 340 (340)
T 4aow_A 312 LAWSADGQ-TLFAGYTDNLV-RVWQVTIGTR 340 (340)
T ss_dssp EEECTTSS-EEEEEETTSCE-EEEEEEC---
T ss_pred EEECCCCC-EEEEEeCCCEE-EEEeCCCcCC
Confidence 99999999 99999999999 9999999863
No 83
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.96 E-value=6.1e-29 Score=268.18 Aligned_cols=254 Identities=13% Similarity=0.115 Sum_probs=191.9
Q ss_pred cCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcccccccCCceeEecCCCCeEEEEEccC--CCEEEEEECCC
Q 003822 495 FGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSM--DELFLASGYSK 572 (793)
Q Consensus 495 ~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~--~~~lla~g~Dg 572 (793)
.+|.+.|++++|+ +++++|++|+.|++|++||+.++..... .....|..+|.+++|+++ +..+++++.|+
T Consensus 10 ~~H~~~V~~v~~s-~~g~~lasgs~D~~v~lwd~~~~~~~~~-------~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~ 81 (316)
T 3bg1_A 10 TSHEDMIHDAQMD-YYGTRLATCSSDRSVKIFDVRNGGQILI-------ADLRGHEGPVWQVAWAHPMYGNILASCSYDR 81 (316)
T ss_dssp ----CCEEEEEEC-GGGCEEEEEETTTEEEEEEEETTEEEEE-------EEEECCSSCEEEEEECCGGGSSCEEEEETTS
T ss_pred ccccCeEEEeeEc-CCCCEEEEEeCCCeEEEEEecCCCcEEE-------EEEcCCCccEEEEEeCCCCCCCEEEEEECCC
Confidence 3899999999998 7899999999999999999987532100 112246688999999754 78899999999
Q ss_pred cEEEEECCCC--cEEEEEcccCCCCeEEEEEcCCC-CcEEEEEeCCCeEEEEECCCCCc-cceEEccCCCCeE-EEEEec
Q 003822 573 NIALYDINSG--RRLQVFADMHKEHINVVKFSNHS-PSIFATSSFDQDVKLWDLRQKPI-QPCYTASSSKGNV-MVCFSP 647 (793)
Q Consensus 573 ~I~IWDl~tg--~~l~~~~~gh~~~V~sv~fspdg-~~~LaTgs~Dg~IrIWDlrt~~~-~~~~~l~~~~~~v-sv~fSp 647 (793)
+|++||++++ +....+. +|...|++++|+|++ +.+|++|+.|++|++||++.... .......+|...+ +++|+|
T Consensus 82 ~v~iWd~~~~~~~~~~~~~-~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~ 160 (316)
T 3bg1_A 82 KVIIWREENGTWEKSHEHA-GHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAP 160 (316)
T ss_dssp CEEEECCSSSCCCEEEEEC-CCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECC
T ss_pred EEEEEECCCCcceEEEEcc-CCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEcc
Confidence 9999999987 4666777 699999999999982 27999999999999999987532 1223344555544 589999
Q ss_pred C-----------------CCEEEEEeCCCeEEEEEcCCCc---EEEEEeeecCCCCCcEEEEEeeCC---CeEEEEEeCC
Q 003822 648 D-----------------DHYLLVSAVDNEVRQLLAVDGR---VHLNFGITATGSSQNYTRSYYLNG---RDYIVSGSCD 704 (793)
Q Consensus 648 d-----------------g~~Lasgs~Dg~I~IwDl~tg~---~~~~l~~~~~~~~~v~s~afspdg---~~~L~Sgs~D 704 (793)
+ +++|++|+.|+.|++||+.++. ....+ ..|...+..++|+|++ ..+|++|+.|
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l---~~h~~~V~~v~~sp~~~~~~~~las~s~D 237 (316)
T 3bg1_A 161 AVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKL---EAHSDWVRDVAWAPSIGLPTSTIASCSQD 237 (316)
T ss_dssp CCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECC---BCCSSCEEEEECCCCSSCSCCEEEEEETT
T ss_pred ccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeec---ccCCCceEEEEecCCCCCCCceEEEEcCC
Confidence 7 4789999999999999997653 33333 3566789999999986 2389999999
Q ss_pred CcEEEEEEcCCCcEEEeeeecCCCCCccceeeeccCCccccCCccEEEEEEcCCCCceeeEeeEEEeCCCcEEEEcCCC
Q 003822 705 EHVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKSEIVKVNLLASTDHCDKECSHGQ 783 (793)
Q Consensus 705 g~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~~~~iv~~~ltaS~Dg~VkvW~~~~ 783 (793)
++| ++|++.++..-. +. ...+..|...|.+++|+|+ ...++ +|+.||+|++|+...
T Consensus 238 ~~v-~iw~~~~~~~~~-------------~~----~~~~~~~~~~v~~v~~sp~-g~~la----s~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 238 GRV-FIWTCDDASSNT-------------WS----PKLLHKFNDVVWHVSWSIT-ANILA----VSGGDNKVTLWKESV 293 (316)
T ss_dssp CEE-EEEECSSTTCCC-------------CB----CCEEEECSSCEEEEEECTT-TCCEE----EEESSSCEEEEEECT
T ss_pred CeE-EEEEccCccccc-------------hh----hhhhhcCCCcEEEEEEcCC-CCEEE----EEcCCCeEEEEEECC
Confidence 999 999987632100 00 0011234568999999996 45566 899999999999753
No 84
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.96 E-value=5.5e-27 Score=253.54 Aligned_cols=251 Identities=16% Similarity=0.112 Sum_probs=213.2
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcC-----CcEEEEEcCC
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDN-----GSLKLYDIRH 530 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~D-----gtV~vWDl~~ 530 (793)
|++++|+| ++++|++++.||.|++||+.+++.+..+. |...|.+++|+ ++++++++++.+ |.|++||+..
T Consensus 77 v~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~v~~~~~~-~~~~~l~~~~~~~~~~~g~i~~~d~~~ 151 (369)
T 3zwl_B 77 IWSIDVDC-FTKYCVTGSADYSIKLWDVSNGQCVATWK---SPVPVKRVEFS-PCGNYFLAILDNVMKNPGSINIYEIER 151 (369)
T ss_dssp EEEEEECT-TSSEEEEEETTTEEEEEETTTCCEEEEEE---CSSCEEEEEEC-TTSSEEEEEECCBTTBCCEEEEEEEEE
T ss_pred EEEEEEcC-CCCEEEEEeCCCeEEEEECCCCcEEEEee---cCCCeEEEEEc-cCCCEEEEecCCccCCCCEEEEEEecC
Confidence 99999999 89999999999999999999999888875 67899999998 789999999999 9999999987
Q ss_pred CCCcccccc--cCCceeEecCCC--CeEEEEEccCCCEEEEEECCCcEEEEECCC-CcEEEEEcccCCCCeEEEEEcCCC
Q 003822 531 MPPSIRGMH--YGAGTVTFDEFD--QLTSVHVNSMDELFLASGYSKNIALYDINS-GRRLQVFADMHKEHINVVKFSNHS 605 (793)
Q Consensus 531 ~~~~~~~~~--~~~~~~~~~~~~--~V~sv~~s~~~~~lla~g~Dg~I~IWDl~t-g~~l~~~~~gh~~~V~sv~fspdg 605 (793)
......... .........+.. .+.+++|+|++..+++++.||.|++||+++ ++.+..+. +|...|.+++|+|++
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~ 230 (369)
T 3zwl_B 152 DSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSID-LHEKSISDMQFSPDL 230 (369)
T ss_dssp CTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEE-CCSSCEEEEEECTTS
T ss_pred CccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEe-cCCCceeEEEECCCC
Confidence 654221111 111112223333 899999999999999999999999999999 78888888 699999999999998
Q ss_pred CcEEEEEeCCCeEEEEECCCCCccceEEccCCCCeEEEEEecCCCEEEEEeCCC--------------eEEEEEcCCCcE
Q 003822 606 PSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLVSAVDN--------------EVRQLLAVDGRV 671 (793)
Q Consensus 606 ~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs~Dg--------------~I~IwDl~tg~~ 671 (793)
.+|++++.||.|++||++++.... .+.....+..++|+|+++++++++.++ .+++||..+++.
T Consensus 231 -~~l~~~~~d~~i~v~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~ 307 (369)
T 3zwl_B 231 -TYFITSSRDTNSFLVDVSTLQVLK--KYETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEE 307 (369)
T ss_dssp -SEEEEEETTSEEEEEETTTCCEEE--EEECSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCE
T ss_pred -CEEEEecCCceEEEEECCCCceee--eecCCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcc
Confidence 899999999999999999885443 344555666799999999999999888 899999999998
Q ss_pred EEEEeeecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEE
Q 003822 672 HLNFGITATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRLR 720 (793)
Q Consensus 672 ~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~ 720 (793)
+..+. .+...+..++|+|+++ +|++|+.||.| ++|++.++....
T Consensus 308 ~~~~~---~~~~~v~~~~~s~~~~-~l~s~~~dg~v-~iw~~~~~~~~~ 351 (369)
T 3zwl_B 308 IGRVQ---GHFGPLNTVAISPQGT-SYASGGEDGFI-RLHHFEKSYFDF 351 (369)
T ss_dssp EEEEE---CCSSCEEEEEECTTSS-EEEEEETTSEE-EEEEECHHHHTC
T ss_pred hhhee---cccCcEEEEEECCCCC-EEEEEcCCCeE-EEEECccccchh
Confidence 88775 4667899999999998 99999999999 999998876554
No 85
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.7e-27 Score=258.98 Aligned_cols=254 Identities=13% Similarity=0.156 Sum_probs=201.9
Q ss_pred CCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcccccccCCceeEecCCCCeEEEEEccC--CCEEEEEECCCc
Q 003822 496 GAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSM--DELFLASGYSKN 573 (793)
Q Consensus 496 ~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~--~~~lla~g~Dg~ 573 (793)
+|.+.|.+++|+ +++++|++|+.||.|++||+........ .....|...|.+++|+++ +..+++++.||.
T Consensus 9 ~h~~~v~~~~~s-~~~~~l~~~~~dg~i~iw~~~~~~~~~~-------~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~ 80 (379)
T 3jrp_A 9 AHNELIHDAVLD-YYGKRLATCSSDKTIKIFEVEGETHKLI-------DTLTGHEGPVWRVDWAHPKFGTILASCSYDGK 80 (379)
T ss_dssp ECCCCEEEEEEC-SSSSEEEEEETTSCEEEEEEETTEEEEE-------EEECCCSSCEEEEEECCGGGCSEEEEEETTSC
T ss_pred CCcccEEEEEEc-CCCCEEEEEECCCcEEEEecCCCcceee-------eEecCCCCcEEEEEeCCCCCCCEEEEeccCCE
Confidence 899999999998 7899999999999999999975322110 112245678999999877 889999999999
Q ss_pred EEEEECCCCc--EEEEEcccCCCCeEEEEEcCC--CCcEEEEEeCCCeEEEEECCCCCccceEEccCCCCeE-EEEEec-
Q 003822 574 IALYDINSGR--RLQVFADMHKEHINVVKFSNH--SPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSP- 647 (793)
Q Consensus 574 I~IWDl~tg~--~l~~~~~gh~~~V~sv~fspd--g~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~~~~v-sv~fSp- 647 (793)
|++||+.+++ .+..+. +|...|++++|+|+ + .++++++.||.|++||+++........+..|...+ +++|+|
T Consensus 81 v~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~ 158 (379)
T 3jrp_A 81 VLIWKEENGRWSQIAVHA-VHSASVNSVQWAPHEYG-PLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPA 158 (379)
T ss_dssp EEEEEEETTEEEEEEEEC-CCSSCEEEEEECCGGGC-SEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCC
T ss_pred EEEEEcCCCceeEeeeec-CCCcceEEEEeCCCCCC-CEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCc
Confidence 9999999987 667777 69999999999999 7 89999999999999999987555555555665554 699999
Q ss_pred ------------CCCEEEEEeCCCeEEEEEcCCCcEEEEE-eeecCCCCCcEEEEEeeC---CCeEEEEEeCCCcEEEEE
Q 003822 648 ------------DDHYLLVSAVDNEVRQLLAVDGRVHLNF-GITATGSSQNYTRSYYLN---GRDYIVSGSCDEHVVRIC 711 (793)
Q Consensus 648 ------------dg~~Lasgs~Dg~I~IwDl~tg~~~~~l-~~~~~~~~~v~s~afspd---g~~~L~Sgs~Dg~II~IW 711 (793)
++.++++++.||.|++||+.++...... .....+...+..++|+|+ +. +|++++.||.| ++|
T Consensus 159 ~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~-~l~s~~~dg~i-~iw 236 (379)
T 3jrp_A 159 TIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRS-YLASVSQDRTC-IIW 236 (379)
T ss_dssp C----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSE-EEEEEETTSCE-EEE
T ss_pred cccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCC-eEEEEeCCCEE-EEE
Confidence 6999999999999999999877533222 122346678999999999 55 99999999999 999
Q ss_pred EcCCCcEEEeeeecCCCCCccceeeeccCCccccCCccEEEEEEcCCCCceeeEeeEEEeCCCcEEEEcCC
Q 003822 712 CAQTGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKSEIVKVNLLASTDHCDKECSHG 782 (793)
Q Consensus 712 Dv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~~~~iv~~~ltaS~Dg~VkvW~~~ 782 (793)
|+.+++......+ .....|...|.+++|+|++ ..++ +++.||.|++|+..
T Consensus 237 d~~~~~~~~~~~~----------------~~~~~~~~~v~~~~~s~~g-~~l~----~~~~dg~i~iw~~~ 286 (379)
T 3jrp_A 237 TQDNEQGPWKKTL----------------LKEEKFPDVLWRASWSLSG-NVLA----LSGGDNKVTLWKEN 286 (379)
T ss_dssp EESSTTSCCEEEE----------------SSSSCCSSCEEEEEECSSS-CCEE----EEESSSSEEEEEEE
T ss_pred eCCCCCccceeee----------------eccccCCCcEEEEEEcCCC-CEEE----EecCCCcEEEEeCC
Confidence 9998753220011 1112456689999999964 4555 78999999999976
No 86
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.96 E-value=8.4e-28 Score=295.85 Aligned_cols=298 Identities=9% Similarity=-0.008 Sum_probs=212.7
Q ss_pred ceEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEecc----------------CCCCCEEEEEEeeCCCCEEEEEE
Q 003822 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSF----------------GAMNSVLGLCWLKKYPSKLIAGS 518 (793)
Q Consensus 455 ~V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~----------------~h~~~V~sv~fs~~~g~~Lasgs 518 (793)
.|++++|+|.++..+++|+.||.| +||+.+++.+..+..+ +|...|.+++|+ +++.+|++|+
T Consensus 153 ~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fs-pdg~~lasgs 230 (902)
T 2oaj_A 153 PIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYH-PNSLHIITIH 230 (902)
T ss_dssp CCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEEC-TTSSEEEEEE
T ss_pred CeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEc-CCCCEEEEEE
Confidence 389999999656799999999999 9999999988877632 245789999998 7899999999
Q ss_pred cCCcEEEEEcCCCCCccc-cc---ccC-------------C---ceeEe-------------------------------
Q 003822 519 DNGSLKLYDIRHMPPSIR-GM---HYG-------------A---GTVTF------------------------------- 547 (793)
Q Consensus 519 ~DgtV~vWDl~~~~~~~~-~~---~~~-------------~---~~~~~------------------------------- 547 (793)
.||+|++||+++++.... .+ ..+ . ..+.+
T Consensus 231 ~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~ 310 (902)
T 2oaj_A 231 EDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDL 310 (902)
T ss_dssp TTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEE
T ss_pred CCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEec
Confidence 999999999988654221 00 000 0 00000
Q ss_pred -----------------------------cCCCCeEEEEEcc----------CCCEEEEEECCCcEEEEECCCCcEEEE-
Q 003822 548 -----------------------------DEFDQLTSVHVNS----------MDELFLASGYSKNIALYDINSGRRLQV- 587 (793)
Q Consensus 548 -----------------------------~~~~~V~sv~~s~----------~~~~lla~g~Dg~I~IWDl~tg~~l~~- 587 (793)
.+...|.++.+.+ +...+++++.||.|++||+.++.....
T Consensus 311 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~ 390 (902)
T 2oaj_A 311 GYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKA 390 (902)
T ss_dssp EECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCG
T ss_pred CCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCccccc
Confidence 0011222333322 112456666678888888876643322
Q ss_pred ------Ec---------------------------------ccCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEECCCCCc
Q 003822 588 ------FA---------------------------------DMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPI 628 (793)
Q Consensus 588 ------~~---------------------------------~gh~~~V~sv~fspdg~~~LaTgs~Dg~IrIWDlrt~~~ 628 (793)
+. .+|...+..++|+|++ ++|+||+.|++|++||+.++..
T Consensus 391 ~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg-~~laSgs~DgtVrlWd~~~g~~ 469 (902)
T 2oaj_A 391 SLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYG-TAFITGHSNGSVRIYDASHGDI 469 (902)
T ss_dssp GGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEE-EEEEEEETTSEEEEEESSCCTT
T ss_pred ccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccC-cEEEEecCCCcEEEEECCCccc
Confidence 11 1234444455667888 8999999999999999988743
Q ss_pred c--ceEE--cc-----CCCC-eEEEEEecCCCEEEEEeCCCeEEEEEcCCCc----------------------------
Q 003822 629 Q--PCYT--AS-----SSKG-NVMVCFSPDDHYLLVSAVDNEVRQLLAVDGR---------------------------- 670 (793)
Q Consensus 629 ~--~~~~--l~-----~~~~-~vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~---------------------------- 670 (793)
. ..+. +. +|.. +.+++|+|+|++||+|+.||+|++||+.+++
T Consensus 470 ~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 549 (902)
T 2oaj_A 470 QDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGV 549 (902)
T ss_dssp TTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCS
T ss_pred cCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccc
Confidence 2 1222 11 4544 4569999999999999999999999998763
Q ss_pred -----------------EEEEEeeecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCCCCccc
Q 003822 671 -----------------VHLNFGITATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKGSGTSM 733 (793)
Q Consensus 671 -----------------~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~ 733 (793)
++..+ ..|...+.+++|+|+| +||+|+.|++| ++||+.++..+....+
T Consensus 550 ~~~~~~~~~~~~~~g~~~~~~l---~~h~~~V~svafSpdG--~lAsgs~D~tv-~lwd~~~~~~~~~~~~--------- 614 (902)
T 2oaj_A 550 LVDVRDRAPTGVRQGFMPSTAV---HANKGKTSAINNSNIG--FVGIAYAAGSL-MLIDRRGPAIIYMENI--------- 614 (902)
T ss_dssp EEECGGGCCTTCSEEEEEEEEE---CCCSCSEEEEEECBTS--EEEEEETTSEE-EEEETTTTEEEEEEEG---------
T ss_pred cccccccCCCCCCCccceeEEE---EcCCCcEEEEEecCCc--EEEEEeCCCcE-EEEECCCCeEEEEeeh---------
Confidence 12333 3467789999999999 89999999999 9999988877651111
Q ss_pred eeeeccCCccc-cCCccEEEEEEc-----CCCC--ceeeEeeEEEeCCCcEEEEcC
Q 003822 734 FVQSLRGDPFR-DFNMSILAAYTR-----PSSK--SEIVKVNLLASTDHCDKECSH 781 (793)
Q Consensus 734 ~v~sl~g~~~~-~h~~~V~sva~~-----P~~~--~~iv~~~ltaS~Dg~VkvW~~ 781 (793)
..+. +|...|++++|+ |++. ..++ +|+.||+|++|++
T Consensus 615 -------~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~----sgs~D~tv~~wd~ 659 (902)
T 2oaj_A 615 -------REISGAQSACVTCIEFVIMEYGDDGYSSILMV----CGTDMGEVITYKI 659 (902)
T ss_dssp -------GGTCSSCCCCEEEEEEEEEECTTSSSEEEEEE----EEETTSEEEEEEE
T ss_pred -------hHhccccccceEEEEEEEEecCCCCCcceEEE----EEecCCcEEEEEE
Confidence 1232 677899999999 8752 4555 8999999999997
No 87
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.96 E-value=3.3e-27 Score=266.92 Aligned_cols=286 Identities=13% Similarity=0.045 Sum_probs=218.0
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCe---EEEEEecc-------------------------------------
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENEN---IVSYIPSF------------------------------------- 495 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~---~i~~l~~~------------------------------------- 495 (793)
+++++|+| ++++|+++ .++.|++||+.+|+ .+..+...
T Consensus 7 ~~~v~~s~-dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (450)
T 2vdu_B 7 LQNLLTSR-DGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDSI 84 (450)
T ss_dssp CCEEEECS-SSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC------------------------------------
T ss_pred EEEEEecC-CCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCccc
Confidence 68899999 88866665 57899999999988 55544411
Q ss_pred ---------------CCCCCEEEEEEeeCCCCEE-EEEEcCCcEEEEEcC--CCCCcccccccCCceeEecCCCCeEEEE
Q 003822 496 ---------------GAMNSVLGLCWLKKYPSKL-IAGSDNGSLKLYDIR--HMPPSIRGMHYGAGTVTFDEFDQLTSVH 557 (793)
Q Consensus 496 ---------------~h~~~V~sv~fs~~~g~~L-asgs~DgtV~vWDl~--~~~~~~~~~~~~~~~~~~~~~~~V~sv~ 557 (793)
+|.+.|.+++|+ +++++| ++|+.||+|++||+. ++... ..+ ....+...|.+++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~v~~~~~s-~d~~~l~~~~~~dg~v~iwd~~~~~~~~~-~~~------~~~~~~~~v~~~~ 156 (450)
T 2vdu_B 85 KRTAAKVPSPGLGAPPIYSYIRNLRLT-SDESRLIACADSDKSLLVFDVDKTSKNVL-KLR------KRFCFSKRPNAIS 156 (450)
T ss_dssp ---------------CCCCCEEEEEEC-TTSSEEEEEEGGGTEEEEEEECSSSSSCE-EEE------EEEECSSCEEEEE
T ss_pred cccCccccCCCCCCCccCCceEEEEEc-CCCCEEEEEECCCCeEEEEECcCCCCcee-eee------ecccCCCCceEEE
Confidence 244479999998 788885 889999999999998 54431 111 1124457899999
Q ss_pred EccCCCEEEEEECCCcEEEEECCCCcEEE----EEcccCCCCeEEEEEcCC---CCcEEEEEeCCCeEEEEECCCCCccc
Q 003822 558 VNSMDELFLASGYSKNIALYDINSGRRLQ----VFADMHKEHINVVKFSNH---SPSIFATSSFDQDVKLWDLRQKPIQP 630 (793)
Q Consensus 558 ~s~~~~~lla~g~Dg~I~IWDl~tg~~l~----~~~~gh~~~V~sv~fspd---g~~~LaTgs~Dg~IrIWDlrt~~~~~ 630 (793)
|+|++..+++++.+|.|++|++.+++... .+. +|...|++++|+|+ + .+|++|+.|++|++||++++....
T Consensus 157 ~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~sp~~~~~-~~l~s~~~d~~i~vwd~~~~~~~~ 234 (450)
T 2vdu_B 157 IAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPIL-GHVSMLTDVHLIKDSDGH-QFIITSDRDEHIKISHYPQCFIVD 234 (450)
T ss_dssp ECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSE-ECSSCEEEEEEEECTTSC-EEEEEEETTSCEEEEEESCTTCEE
T ss_pred EcCCCCEEEEEeCCCcEEEEecCCcccccccceeee-cccCceEEEEEcCCCCCC-cEEEEEcCCCcEEEEECCCCceee
Confidence 99999999999999999999999876543 566 69999999999999 7 899999999999999999875432
Q ss_pred eEEccCCCCeE-EEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeec----------------------CCCCCcEE
Q 003822 631 CYTASSSKGNV-MVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITA----------------------TGSSQNYT 687 (793)
Q Consensus 631 ~~~l~~~~~~v-sv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~----------------------~~~~~v~s 687 (793)
.+ ..+|...+ +++|+ +|++|++++.|+.|++||+.+++.+..+.... .....+..
T Consensus 235 ~~-~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 312 (450)
T 2vdu_B 235 KW-LFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSK 312 (450)
T ss_dssp EE-CCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEE
T ss_pred ee-ecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEE
Confidence 22 44555544 69999 99999999999999999999999888876321 22346788
Q ss_pred EEEeeCCCeEEEEEe-CCCcEEEEEEc--CCC---cEEEeeeecCCCCCccceeeeccCCccccCCccEEEEEEcCCCCc
Q 003822 688 RSYYLNGRDYIVSGS-CDEHVVRICCA--QTG---RRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKS 761 (793)
Q Consensus 688 ~afspdg~~~L~Sgs-~Dg~II~IWDv--~tg---~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~~~ 761 (793)
++|+|+++ +|++++ .|+.| ++|++ .++ +.+. .+.+| ..|.+++|+|+ .
T Consensus 313 i~~~~~~~-~l~~~~~~d~~i-~iw~~~~~~~~~l~~~~--~~~~~--------------------~~v~~~~~~~~--~ 366 (450)
T 2vdu_B 313 IIKSKNLP-FVAFFVEATKCI-IILEMSEKQKGDLALKQ--IITFP--------------------YNVISLSAHND--E 366 (450)
T ss_dssp EEECSSSS-EEEEEETTCSEE-EEEEECSSSTTCEEEEE--EEECS--------------------SCEEEEEEETT--E
T ss_pred EEEeCCCC-EEEEEECCCCeE-EEEEeccCCCCceeecc--EeccC--------------------CceEEEEecCC--c
Confidence 99999998 888888 88999 99999 666 3333 33332 36999999994 1
Q ss_pred eeeEeeEEEe------CCCcEEEEcCCCC
Q 003822 762 EIVKVNLLAS------TDHCDKECSHGQH 784 (793)
Q Consensus 762 ~iv~~~ltaS------~Dg~VkvW~~~~~ 784 (793)
.++ .+++ .+..|++|.....
T Consensus 367 ~~v---~~~~~~~~~~~~~~i~v~~~~~~ 392 (450)
T 2vdu_B 367 FQV---TLDNKESSGVQKNFAKFIEYNLN 392 (450)
T ss_dssp EEE---EECCTTCCSSCCCSEEEEEEETT
T ss_pred EEE---EEecccCCCCCCcceEEEEEEcC
Confidence 222 1222 2556899886543
No 88
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.96 E-value=5.7e-27 Score=249.94 Aligned_cols=273 Identities=15% Similarity=0.152 Sum_probs=203.6
Q ss_pred cCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcccccccCCceeEecCCCCeEEEEEcc--CCCEEEEEECCC
Q 003822 495 FGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNS--MDELFLASGYSK 572 (793)
Q Consensus 495 ~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~--~~~~lla~g~Dg 572 (793)
.+|.+.|++++|+ +++++|++|+.||+|++||+.++....... .....|...|.+++|+| ++..+++++.||
T Consensus 8 ~gH~~~v~~~~~~-~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-----~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg 81 (351)
T 3f3f_A 8 SGHDDLVHDVVYD-FYGRHVATCSSDQHIKVFKLDKDTSNWELS-----DSWRAHDSSIVAIDWASPEYGRIIASASYDK 81 (351)
T ss_dssp CCCSSCEEEEEEC-SSSSEEEEEETTSEEEEEEECSSSCCEEEE-----EEEECCSSCEEEEEECCGGGCSEEEEEETTS
T ss_pred cccccceeEEEEc-CCCCEEEEeeCCCeEEEEECCCCCCcceec-----ceeccCCCcEEEEEEcCCCCCCEEEEEcCCC
Confidence 3899999999998 789999999999999999998754321111 11224668899999998 488999999999
Q ss_pred cEEEEECCCC---------cEEEEEcccCCCCeEEEEEcCC--CCcEEEEEeCCCeEEEEECCCCCccceEEc-------
Q 003822 573 NIALYDINSG---------RRLQVFADMHKEHINVVKFSNH--SPSIFATSSFDQDVKLWDLRQKPIQPCYTA------- 634 (793)
Q Consensus 573 ~I~IWDl~tg---------~~l~~~~~gh~~~V~sv~fspd--g~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l------- 634 (793)
.|++||++++ +.+..+. +|...|.+++|+|+ + .++++++.||.|++||++++.....+..
T Consensus 82 ~v~vwd~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~ 159 (351)
T 3f3f_A 82 TVKLWEEDPDQEECSGRRWNKLCTLN-DSKGSLYSVKFAPAHLG-LKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVL 159 (351)
T ss_dssp CEEEEEECTTSCTTSSCSEEEEEEEC-CCSSCEEEEEECCGGGC-SEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESC
T ss_pred eEEEEecCCCcccccccCcceeeeec-ccCCceeEEEEcCCCCC-cEEEEecCCCcEEEecCCChHHhcccccccccccc
Confidence 9999999987 5677777 69999999999999 7 8999999999999999998754333221
Q ss_pred -----cCCCCeEEEEEecC---CCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCCC---eEEEEEeC
Q 003822 635 -----SSSKGNVMVCFSPD---DHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNGR---DYIVSGSC 703 (793)
Q Consensus 635 -----~~~~~~vsv~fSpd---g~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg~---~~L~Sgs~ 703 (793)
.....+.+++|+|+ +.++++++.++.+.+|+...++...... ...+...+..++|+|++. .+|++|+.
T Consensus 160 ~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~i~~~~~~p~~~~~~~~l~s~~~ 238 (351)
T 3f3f_A 160 SIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAK-LPGHKSLIRSISWAPSIGRWYQLIATGCK 238 (351)
T ss_dssp SCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEE-CCCCCSCEEEEEECCCSSCSSEEEEEEET
T ss_pred ccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeee-cCCCCcceeEEEECCCCCCcceEEEEEcC
Confidence 22334557999997 9999999999999888888776532222 235677899999999982 39999999
Q ss_pred CCcEEEEEEcCCCcEEEeeeecCCCCCccce---------------------------eeeccCCccccCCccEEEEEEc
Q 003822 704 DEHVVRICCAQTGRRLRDISLEGKGSGTSMF---------------------------VQSLRGDPFRDFNMSILAAYTR 756 (793)
Q Consensus 704 Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~---------------------------v~sl~g~~~~~h~~~V~sva~~ 756 (793)
||.| ++||+.++.... ....+....... .....-..+.+|...|.+++|+
T Consensus 239 dg~i-~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s 315 (351)
T 3f3f_A 239 DGRI-RIFKITEKLSPL--ASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWN 315 (351)
T ss_dssp TSCE-EEEEEEECC-----------------------------------------CCSEEEEEEEEECTTSSCEEEEEEC
T ss_pred CCeE-EEEeCCCCcCcc--ccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEc
Confidence 9999 999998875433 211111000000 0000112345678899999999
Q ss_pred CCCCceeeEeeEEEeCCCcEEEEcCCCC
Q 003822 757 PSSKSEIVKVNLLASTDHCDKECSHGQH 784 (793)
Q Consensus 757 P~~~~~iv~~~ltaS~Dg~VkvW~~~~~ 784 (793)
|++ ..++ +|+.||.|++|+....
T Consensus 316 ~~~-~~l~----s~~~dg~v~iw~~~~~ 338 (351)
T 3f3f_A 316 LTG-TILS----SAGDDGKVRLWKATYS 338 (351)
T ss_dssp SSS-CCEE----EEETTSCEEEEEECTT
T ss_pred CCC-CEEE----EecCCCcEEEEecCcC
Confidence 964 4566 8999999999998754
No 89
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.96 E-value=1.6e-27 Score=262.38 Aligned_cols=250 Identities=14% Similarity=0.165 Sum_probs=202.7
Q ss_pred eEEEEEeCCC----C---CEEEEEeCCCeEEEEECCCCeE-----EEEEeccCC-----CCCEEEEEEee---CCCCE-E
Q 003822 456 PRQFEYHPSI----S---CLMVFGTLDGEIVVVNHENENI-----VSYIPSFGA-----MNSVLGLCWLK---KYPSK-L 514 (793)
Q Consensus 456 V~~vafsP~d----~---~~Lasgs~DG~I~VWd~~t~~~-----i~~l~~~~h-----~~~V~sv~fs~---~~g~~-L 514 (793)
|++++|+| + + .+|++|+.||.|++||+.+++. ...+. .| ...|.+++|++ +++++ |
T Consensus 65 v~~~~~~~-~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~l 141 (397)
T 1sq9_A 65 LHHVDVLQ-AIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLD--LLDSDMKKHSFWALKWGASNDRLLSHRL 141 (397)
T ss_dssp EEEEEEEE-EEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEEC--CSCTTGGGSCEEEEEEECCC----CEEE
T ss_pred EEEEEEec-ccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeec--ccccccCCCcEEEEEEeeccCCCCceEE
Confidence 89999999 7 8 8999999999999999988775 66655 66 58999999972 46788 9
Q ss_pred EEEEcCCcEEEEEcCC------CCCcccccccCCceeE------ecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCC
Q 003822 515 IAGSDNGSLKLYDIRH------MPPSIRGMHYGAGTVT------FDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSG 582 (793)
Q Consensus 515 asgs~DgtV~vWDl~~------~~~~~~~~~~~~~~~~------~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg 582 (793)
++++.||.|++||+.+ +...... ...... ..+...|.+++|+|++ .+++++.||.|++||++++
T Consensus 142 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~ 217 (397)
T 1sq9_A 142 VATDVKGTTYIWKFHPFADESNSLTLNWS---PTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTL 217 (397)
T ss_dssp EEEETTSCEEEEEEESSSSHHHHTTTCCC---CEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTT
T ss_pred EEEeCCCcEEEEeCCccccccccceeecc---CcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCC
Confidence 9999999999999988 4332100 000111 2356789999999988 8888889999999999999
Q ss_pred cEEEEEccc---C---CCCeEEEEEcCCCCcEEEEEeCC---CeEEEEECCCCCccceEEccC-------------CCCe
Q 003822 583 RRLQVFADM---H---KEHINVVKFSNHSPSIFATSSFD---QDVKLWDLRQKPIQPCYTASS-------------SKGN 640 (793)
Q Consensus 583 ~~l~~~~~g---h---~~~V~sv~fspdg~~~LaTgs~D---g~IrIWDlrt~~~~~~~~l~~-------------~~~~ 640 (793)
+.+..+. + | ...|.+++|+|++ .+|++++.| |.|++||+++++. +..+.+ |...
T Consensus 218 ~~~~~~~-~~~~h~~~~~~i~~i~~~~~~-~~l~~~~~d~~~g~i~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 293 (397)
T 1sq9_A 218 RPLYNFE-SQHSMINNSNSIRSVKFSPQG-SLLAIAHDSNSFGCITLYETEFGER--IGSLSVPTHSSQASLGEFAHSSW 293 (397)
T ss_dssp EEEEEEE-CCC---CCCCCEEEEEECSST-TEEEEEEEETTEEEEEEEETTTCCE--EEEECBC--------CCBSBSSC
T ss_pred ceeEEEe-ccccccccCCccceEEECCCC-CEEEEEecCCCCceEEEEECCCCcc--cceeccCcccccccccccccCCc
Confidence 9999998 6 8 9999999999998 899999999 9999999998743 444444 4444
Q ss_pred -EEEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeec---CC---------------CCCcEEEEEeeCCC------
Q 003822 641 -VMVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITA---TG---------------SSQNYTRSYYLNGR------ 695 (793)
Q Consensus 641 -vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~---~~---------------~~~v~s~afspdg~------ 695 (793)
.+++|+|++++|++++.||.|++||+.+++.+..+.... .+ ...+..++|+|++.
T Consensus 294 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~ 373 (397)
T 1sq9_A 294 VMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGA 373 (397)
T ss_dssp EEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTC
T ss_pred EEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccc
Confidence 469999999999999999999999999999988886210 23 67899999999982
Q ss_pred ---eEEEEEeCCCcEEEEEEcCCCc
Q 003822 696 ---DYIVSGSCDEHVVRICCAQTGR 717 (793)
Q Consensus 696 ---~~L~Sgs~Dg~II~IWDv~tg~ 717 (793)
.+|++|+.||.| ++|++.+|+
T Consensus 374 ~~~~~l~s~~~dg~i-~iw~~~~g~ 397 (397)
T 1sq9_A 374 DLNESLCCVCLDRSI-RWFREAGGK 397 (397)
T ss_dssp TTSCEEEEEETTTEE-EEEEEEC--
T ss_pred cccceEEEecCCCcE-EEEEcCCCC
Confidence 399999999999 999998874
No 90
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.96 E-value=1.4e-27 Score=259.66 Aligned_cols=251 Identities=14% Similarity=0.071 Sum_probs=205.0
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcc
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSI 535 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~ 535 (793)
|++++|+| ++++|++|+.||.|++||+.+++........+|...|.+++|+ +++++|++|+.||.|++||++.+....
T Consensus 55 v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~d~~v~i~d~~~~~~~~ 132 (372)
T 1k8k_C 55 VTGVDWAP-DSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWA-PNEKKFAVGSGSRVISICYFEQENDWW 132 (372)
T ss_dssp EEEEEEET-TTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEEC-TTSSEEEEEETTSSEEEEEEETTTTEE
T ss_pred ccEEEEeC-CCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEEC-CCCCEEEEEeCCCEEEEEEecCCCcce
Confidence 99999999 9999999999999999999998877776666899999999998 789999999999999999998865311
Q ss_pred cccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEEC------------------CCCcEEEEEcccCCCCeE
Q 003822 536 RGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDI------------------NSGRRLQVFADMHKEHIN 597 (793)
Q Consensus 536 ~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl------------------~tg~~l~~~~~gh~~~V~ 597 (793)
.. ......|...|.+++|+|++..+++++.||.|++||+ .+++.+..+. +|...|.
T Consensus 133 ~~-----~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~ 206 (372)
T 1k8k_C 133 VC-----KHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESS-SSCGWVH 206 (372)
T ss_dssp EE-----EEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECC-CCSSCEE
T ss_pred ee-----eeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecC-CCCCeEE
Confidence 00 0111234578999999999999999999999999995 4678888888 6999999
Q ss_pred EEEEcCCCCcEEEEEeCCCeEEEEECCCCCccceEEccCCCC-eEEEEEecCCCEEEEEeCCCeEEEEEcCC--CcEEEE
Q 003822 598 VVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKG-NVMVCFSPDDHYLLVSAVDNEVRQLLAVD--GRVHLN 674 (793)
Q Consensus 598 sv~fspdg~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~~~-~vsv~fSpdg~~Lasgs~Dg~I~IwDl~t--g~~~~~ 674 (793)
+++|+|++ .+|++++.||.|++||+++++. +..+..+.. +.+++|+|+|+++++| .|+.|++|++.+ +.....
T Consensus 207 ~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~ 282 (372)
T 1k8k_C 207 GVCFSANG-SRVAWVSHDSTVCLADADKKMA--VATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFG 282 (372)
T ss_dssp EEEECSSS-SEEEEEETTTEEEEEEGGGTTE--EEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEEC
T ss_pred EEEECCCC-CEEEEEeCCCEEEEEECCCCce--eEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEe
Confidence 99999999 8999999999999999998753 445555554 4469999999988888 899999999988 531100
Q ss_pred ------------------------------------EeeecCCCCCcEEEEEeeCCC---eEEEEEeCCCcEEEEEEcCC
Q 003822 675 ------------------------------------FGITATGSSQNYTRSYYLNGR---DYIVSGSCDEHVVRICCAQT 715 (793)
Q Consensus 675 ------------------------------------l~~~~~~~~~v~s~afspdg~---~~L~Sgs~Dg~II~IWDv~t 715 (793)
......|...+..++|++.++ .+|+||+.||.| ++||+.+
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i-~~W~~~~ 361 (372)
T 1k8k_C 283 GRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGM-SIWDVRS 361 (372)
T ss_dssp CCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEE-EEEEHHH
T ss_pred eccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCce-EEEEecC
Confidence 111235667888998775542 399999999999 9999987
Q ss_pred CcEE
Q 003822 716 GRRL 719 (793)
Q Consensus 716 g~~l 719 (793)
++.+
T Consensus 362 ~~~~ 365 (372)
T 1k8k_C 362 LESA 365 (372)
T ss_dssp HHHH
T ss_pred hhHh
Confidence 6543
No 91
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.6e-28 Score=273.43 Aligned_cols=296 Identities=14% Similarity=0.132 Sum_probs=221.9
Q ss_pred EeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCC---CCCcccc
Q 003822 461 YHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRH---MPPSIRG 537 (793)
Q Consensus 461 fsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~---~~~~~~~ 537 (793)
|+| ++..+++++ .|+ .+++.+..+. .+|.+.|++++|+|.++++|++|+.||+|++||+.+ +..
T Consensus 35 f~~-~~~~~~~~~------~w~-~~g~~~~~~~-~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~---- 101 (437)
T 3gre_A 35 FGP-IQEIVRSPN------MGN-LRGKLIATLM-ENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEV---- 101 (437)
T ss_dssp GCC-CCCCCCCCC------GGG-CCCCEEEEEC-TTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCC----
T ss_pred cCC-ccccccccc------ccc-ccceEEeeec-cCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcc----
Confidence 455 556666554 387 4567777772 289999999999833899999999999999999976 321
Q ss_pred cccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECC---CCcEEEEEcc---------c--CCCCeEEEE--E
Q 003822 538 MHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDIN---SGRRLQVFAD---------M--HKEHINVVK--F 601 (793)
Q Consensus 538 ~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~---tg~~l~~~~~---------g--h~~~V~sv~--f 601 (793)
......+.|...|.+++|+|++..+++++.||.|++||+. +++.+..+.. . +...+.++. +
T Consensus 102 ---~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 178 (437)
T 3gre_A 102 ---YSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFV 178 (437)
T ss_dssp ---CSCSEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEE
T ss_pred ---cceeeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEE
Confidence 1113345677899999999999999999999999999995 5655544431 1 455666666 5
Q ss_pred cCCCCcEEEEEeCCCeEEEEECCCCCccceEEccCCC-CeEEEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecC
Q 003822 602 SNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSK-GNVMVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITAT 680 (793)
Q Consensus 602 spdg~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~~-~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~ 680 (793)
++++ .++++|+.||.|++||+++++....+....|. .+.+++|+|++++|++|+.||.|++||+++++.+..+.. .
T Consensus 179 ~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~ 255 (437)
T 3gre_A 179 NEEK-SLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSF--G 255 (437)
T ss_dssp CSSC-EEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBC--T
T ss_pred cCCC-CEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEec--C
Confidence 5677 89999999999999999998554444432144 455699999999999999999999999999998887742 3
Q ss_pred CCCCcEEEEEee----CCCeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCCCCccc--eee---eccCCcccc--CCcc
Q 003822 681 GSSQNYTRSYYL----NGRDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKGSGTSM--FVQ---SLRGDPFRD--FNMS 749 (793)
Q Consensus 681 ~~~~v~s~afsp----dg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~--~v~---sl~g~~~~~--h~~~ 749 (793)
+...+..++|+| ++. +|++|+.||.| ++||+.+++.+. .+.+|...... |.. .+....+.+ |...
T Consensus 256 ~~~~v~~~~~~~~~s~~~~-~l~s~~~dg~i-~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 331 (437)
T 3gre_A 256 DHAPITHVEVCQFYGKNSV-IVVGGSSKTFL-TIWNFVKGHCQY--AFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNA 331 (437)
T ss_dssp TCEEEEEEEECTTTCTTEE-EEEEESTTEEE-EEEETTTTEEEE--EEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGG
T ss_pred CCCceEEEEeccccCCCcc-EEEEEcCCCcE-EEEEcCCCcEEE--EEEcCCCCCccceecccccccccceecccccCCc
Confidence 556788886654 555 99999999999 999999999999 88888642221 100 011112334 7789
Q ss_pred EEEEEEcCCCCceeeEeeEEEeCCCcEEEEcCCCCC
Q 003822 750 ILAAYTRPSSKSEIVKVNLLASTDHCDKECSHGQHS 785 (793)
Q Consensus 750 V~sva~~P~~~~~iv~~~ltaS~Dg~VkvW~~~~~~ 785 (793)
|.+++|++ + ..++ +|+.||.|++|+.....
T Consensus 332 v~~l~~~~-~-~~l~----s~~~d~~i~~wd~~~~~ 361 (437)
T 3gre_A 332 LSTISVSN-D-KILL----TDEATSSIVMFSLNELS 361 (437)
T ss_dssp GCCEEEET-T-EEEE----EEGGGTEEEEEETTCGG
T ss_pred eEEEEECC-c-eEEE----ecCCCCeEEEEECCCcc
Confidence 99999994 3 3444 89999999999987654
No 92
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.96 E-value=1.2e-27 Score=258.18 Aligned_cols=252 Identities=14% Similarity=0.175 Sum_probs=197.5
Q ss_pred eEEEEEeCCC--CCEEEEEeCCCeEEEEECCCCe-EEEEEeccCCCCCEEEEEEee-----CCCCEEEEEEcCCcEEEEE
Q 003822 456 PRQFEYHPSI--SCLMVFGTLDGEIVVVNHENEN-IVSYIPSFGAMNSVLGLCWLK-----KYPSKLIAGSDNGSLKLYD 527 (793)
Q Consensus 456 V~~vafsP~d--~~~Lasgs~DG~I~VWd~~t~~-~i~~l~~~~h~~~V~sv~fs~-----~~g~~Lasgs~DgtV~vWD 527 (793)
|++++|+|.. +.+|++|+.||.|++||+.+++ .+..+. +|...|.+++|.+ +++++|++|+.||.|++||
T Consensus 68 v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd 145 (357)
T 3i2n_A 68 IKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVK--GHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWD 145 (357)
T ss_dssp EEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEEC--CCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEEC
T ss_pred EEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEE--ecccceEEEeeccccccCCCccEEEEEeCCCeEEEEe
Confidence 8999999942 7999999999999999999887 666665 8999999997752 6788999999999999999
Q ss_pred cCCCCCcccccccCCceeEecCCCCeEEEE----EccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcC
Q 003822 528 IRHMPPSIRGMHYGAGTVTFDEFDQLTSVH----VNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSN 603 (793)
Q Consensus 528 l~~~~~~~~~~~~~~~~~~~~~~~~V~sv~----~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fsp 603 (793)
++++.........+.. .....+.+++ |++++..+++++.||.|++||+++++...... |...|.+++|+|
T Consensus 146 ~~~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~--~~~~v~~~~~~~ 219 (357)
T 3i2n_A 146 PRQKDDPVANMEPVQG----ENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETN--IKNGVCSLEFDR 219 (357)
T ss_dssp TTSCSSCSEEECCCTT----SCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEE--CSSCEEEEEESC
T ss_pred CCCCCCcceeccccCC----CCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecC--CCCceEEEEcCC
Confidence 9987643222221111 1124688888 67788899999999999999999998866644 899999999999
Q ss_pred ---CCCcEEEEEeCCCeEEEEECCCCCccceEE---ccCCCCeE-EEEEecCCC-EEEEEeCCCeEEEEEcCCCcEE---
Q 003822 604 ---HSPSIFATSSFDQDVKLWDLRQKPIQPCYT---ASSSKGNV-MVCFSPDDH-YLLVSAVDNEVRQLLAVDGRVH--- 672 (793)
Q Consensus 604 ---dg~~~LaTgs~Dg~IrIWDlrt~~~~~~~~---l~~~~~~v-sv~fSpdg~-~Lasgs~Dg~I~IwDl~tg~~~--- 672 (793)
++ .++++|+.||.|++||++++.....+. ..+|...+ +++|+|+++ ++++++.||.|++||+.++...
T Consensus 220 ~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 298 (357)
T 3i2n_A 220 KDISM-NKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKK 298 (357)
T ss_dssp SSSSC-CEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--C
T ss_pred CCCCC-CEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccc
Confidence 77 899999999999999998864443332 23555555 699999999 8999999999999999865321
Q ss_pred -------------EEEeeecCCCCCcEEEEEeeCCCeEEE-EEeCCCcEEEEEEcCCCcE
Q 003822 673 -------------LNFGITATGSSQNYTRSYYLNGRDYIV-SGSCDEHVVRICCAQTGRR 718 (793)
Q Consensus 673 -------------~~l~~~~~~~~~v~s~afspdg~~~L~-Sgs~Dg~II~IWDv~tg~~ 718 (793)
..+.....+...+..++|+|+++ +|+ +|+.||.| ++||+.+.+.
T Consensus 299 ~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~s~~~d~~i-~iw~~~~~~~ 356 (357)
T 3i2n_A 299 DSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKR-GLCVCSSFDQTV-RVLIVTKLNK 356 (357)
T ss_dssp CTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSST-TEEEEEETTSEE-EEEEECC---
T ss_pred cCCCCccccccccceeeccccCCCCeeEEEEcCCCC-eEEEEecCCCcE-EEEECCCccc
Confidence 12222235677899999999999 665 89999999 9999988764
No 93
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.96 E-value=2.8e-27 Score=266.30 Aligned_cols=274 Identities=14% Similarity=0.162 Sum_probs=203.2
Q ss_pred cCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcccccc-cCCceeEecCCCCeEEEEEccCCC-EEEEEECCC
Q 003822 495 FGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMH-YGAGTVTFDEFDQLTSVHVNSMDE-LFLASGYSK 572 (793)
Q Consensus 495 ~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~~~~~-~~~~~~~~~~~~~V~sv~~s~~~~-~lla~g~Dg 572 (793)
.+|.+.|++++|+|.++.+|++++.||.|++||+.+......... .........|...|.+++|+|.+. .+++++.||
T Consensus 125 ~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg 204 (430)
T 2xyi_A 125 INHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDH 204 (430)
T ss_dssp EEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTS
T ss_pred EcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCC
Confidence 378999999999854478999999999999999986321110000 011122235667899999999888 888888999
Q ss_pred cEEEEECCCCcE-------EEEEcccCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEECCCCC-ccceEEccCCCCe-EEE
Q 003822 573 NIALYDINSGRR-------LQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKP-IQPCYTASSSKGN-VMV 643 (793)
Q Consensus 573 ~I~IWDl~tg~~-------l~~~~~gh~~~V~sv~fspdg~~~LaTgs~Dg~IrIWDlrt~~-~~~~~~l~~~~~~-vsv 643 (793)
.|++||+.++.. ...+. +|...|.+++|+|+++.+|++++.||.|++||+++.. ..+...+..|... .++
T Consensus 205 ~i~vwd~~~~~~~~~~~~~~~~~~-~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i 283 (430)
T 2xyi_A 205 TICLWDINATPKEHRVIDAKNIFT-GHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCL 283 (430)
T ss_dssp CEEEEETTSCCBGGGEEECSEEEC-CCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEE
T ss_pred eEEEEeCCCCCCCCceeccceeec-CCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEE
Confidence 999999997422 35565 6999999999999666899999999999999999863 2334444455544 469
Q ss_pred EEecCCC-EEEEEeCCCeEEEEEcCC-CcEEEEEeeecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEEe
Q 003822 644 CFSPDDH-YLLVSAVDNEVRQLLAVD-GRVHLNFGITATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRLRD 721 (793)
Q Consensus 644 ~fSpdg~-~Lasgs~Dg~I~IwDl~t-g~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~~ 721 (793)
+|+|+++ .+++|+.||.|++||+++ +..+..+. .+...+..++|+|+++.+|++++.||.| +|||+.+.....
T Consensus 284 ~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~---~h~~~v~~i~~sp~~~~~l~s~~~d~~i-~iwd~~~~~~~~- 358 (430)
T 2xyi_A 284 SFNPYSEFILATGSADKTVALWDLRNLKLKLHSFE---SHKDEIFQVQWSPHNETILASSGTDRRL-HVWDLSKIGEEQ- 358 (430)
T ss_dssp EECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEE---CCSSCEEEEEECSSCTTEEEEEETTSCC-EEEEGGGTTCCC-
T ss_pred EeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEee---cCCCCEEEEEECCCCCCEEEEEeCCCcE-EEEeCCCCcccc-
Confidence 9999987 688999999999999998 45556664 4667899999999997689999999999 999998733211
Q ss_pred eeecCCCCCccceeeeccCCccccCCccEEEEEEcCCCCceeeEeeEEEeCCCcEEEEcCCCC
Q 003822 722 ISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKSEIVKVNLLASTDHCDKECSHGQH 784 (793)
Q Consensus 722 ~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~~~~iv~~~ltaS~Dg~VkvW~~~~~ 784 (793)
.......+....+ ..+.+|...|.+++|+|++++.++ +++.||.|++|+....
T Consensus 359 -~~~~~~~~~~~~~-----~~~~~h~~~v~~~~~~p~~~~~l~----s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 359 -STEDAEDGPPELL-----FIHGGHTAKISDFSWNPNEPWIIC----SVSEDNIMQVWQMAEN 411 (430)
T ss_dssp -CHHHHHHCCTTEE-----EECCCCSSCEEEEEECSSSTTEEE----EEETTSEEEEEEECHH
T ss_pred -CccccccCCcceE-----EEcCCCCCCceEEEECCCCCCEEE----EEECCCCEEEeEcccc
Confidence 0000000000011 112345678999999998777888 9999999999997644
No 94
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.96 E-value=1.5e-27 Score=302.27 Aligned_cols=290 Identities=13% Similarity=0.163 Sum_probs=241.3
Q ss_pred ceEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCc
Q 003822 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS 534 (793)
Q Consensus 455 ~V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~ 534 (793)
.|++++|+| ++.++++|+.||.|++||+.++..+..+. +|...|.+++|+ ++++.+++++.||+|++||+.+....
T Consensus 842 ~v~~~~~sp-~~~~l~~~~~dg~v~vwd~~~~~~~~~~~--~h~~~v~~v~~s-pdg~~l~s~s~dg~v~vw~~~~~~~~ 917 (1249)
T 3sfz_A 842 TIQYCDFSP-YDHLAVIALSQYCVELWNIDSRLKVADCR--GHLSWVHGVMFS-PDGSSFLTASDDQTIRVWETKKVCKN 917 (1249)
T ss_dssp CCCEEEECS-STTEEEEECSSSCEEEEETTTTEEEEEEC--CCSSCEEEEEEC-TTSSEEEEEETTSCEEEEEHHHHHSC
T ss_pred ceEEEEEcC-CCCEEEEEeCCCeEEEEEcCCCceeeecC--CCccceEEEEEC-CCCCEEEEEeCCCeEEEEEcccccee
Confidence 488999999 99999999999999999999999888776 899999999998 78999999999999999997642110
Q ss_pred c----------------------------cccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEE
Q 003822 535 I----------------------------RGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQ 586 (793)
Q Consensus 535 ~----------------------------~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~ 586 (793)
. .................+.+++++|++..+++++.+|.|++||+.+++...
T Consensus 918 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~ 997 (1249)
T 3sfz_A 918 SAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFS 997 (1249)
T ss_dssp CSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEE
T ss_pred eeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceee
Confidence 0 000111122233345679999999999999999999999999999999999
Q ss_pred EEcccCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEECCCCCccceEEccCCCC-eEEEEEecCCCEEEEEeCCCeEEEEE
Q 003822 587 VFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKG-NVMVCFSPDDHYLLVSAVDNEVRQLL 665 (793)
Q Consensus 587 ~~~~gh~~~V~sv~fspdg~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~~~-~vsv~fSpdg~~Lasgs~Dg~I~IwD 665 (793)
.+. +|...|++++|+|++ .++++++.||.|++||+.++... ....+.. +.++.|+|++. +++++.||.|++||
T Consensus 998 ~~~-~h~~~v~~l~~s~dg-~~l~s~~~dg~i~vwd~~~~~~~---~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~vwd 1071 (1249)
T 3sfz_A 998 SGV-GHKKAVRHIQFTADG-KTLISSSEDSVIQVWNWQTGDYV---FLQAHQETVKDFRLLQDSR-LLSWSFDGTVKVWN 1071 (1249)
T ss_dssp ECC-CCSSCCCCEEECSSS-SCEEEECSSSBEEEEETTTTEEE---CCBCCSSCEEEEEECSSSE-EEEEESSSEEEEEE
T ss_pred ecc-cCCCceEEEEECCCC-CEEEEEcCCCEEEEEECCCCceE---EEecCCCcEEEEEEcCCCc-EEEEECCCcEEEEE
Confidence 888 699999999999999 89999999999999999987433 2334444 44699999664 78888999999999
Q ss_pred cCCCcEEEEEeeecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCCCCccceeeeccCCcccc
Q 003822 666 AVDGRVHLNFGITATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPFRD 745 (793)
Q Consensus 666 l~tg~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~ 745 (793)
+.+++....+. .+...+..++|+|++. ++++|+.||.| ++||+.+++.+. .+.+|
T Consensus 1072 ~~~~~~~~~~~---~~~~~v~~~~~s~d~~-~l~s~s~d~~v-~iwd~~~~~~~~--~l~~h------------------ 1126 (1249)
T 3sfz_A 1072 VITGRIERDFT---CHQGTVLSCAISSDAT-KFSSTSADKTA-KIWSFDLLSPLH--ELKGH------------------ 1126 (1249)
T ss_dssp TTTTCCCEEEE---CCSSCCCCEEECSSSS-SCEEECCSSCC-CEECSSSSSCSB--CCCCC------------------
T ss_pred CCCCceeEEEc---ccCCcEEEEEECCCCC-EEEEEcCCCcE-EEEECCCcceee--eeccC------------------
Confidence 99999888775 4566788999999999 99999999999 999999998777 55444
Q ss_pred CCccEEEEEEcCCCCceeeEeeEEEeCCCcEEEEcCCCCC
Q 003822 746 FNMSILAAYTRPSSKSEIVKVNLLASTDHCDKECSHGQHS 785 (793)
Q Consensus 746 h~~~V~sva~~P~~~~~iv~~~ltaS~Dg~VkvW~~~~~~ 785 (793)
...|.+++|+|+ ...++ +|+.||+|++|+.....
T Consensus 1127 -~~~v~~~~~s~d-g~~la----t~~~dg~i~vwd~~~~~ 1160 (1249)
T 3sfz_A 1127 -NGCVRCSAFSLD-GILLA----TGDDNGEIRIWNVSDGQ 1160 (1249)
T ss_dssp -SSCEEEEEECSS-SSEEE----EEETTSCCCEEESSSSC
T ss_pred -CCcEEEEEECCC-CCEEE----EEeCCCEEEEEECCCCc
Confidence 467999999996 44555 89999999999987554
No 95
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.96 E-value=8.4e-27 Score=256.45 Aligned_cols=240 Identities=12% Similarity=0.113 Sum_probs=190.1
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcc
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSI 535 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~ 535 (793)
|++++|+|.++.+|++|+.||.|++||+.+..........+|...|.+++|+ +++++|++|+.||.|++||++. +. .
T Consensus 121 v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~d~~i~i~d~~~-~~-~ 197 (383)
T 3ei3_B 121 ITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVS-VSRQMLATGDSTGRLLLLGLDG-HE-I 197 (383)
T ss_dssp EEEEEEETTEEEEEEEEETTTEEEEEETTSCEEEEEECCCCSSCCEEEEEEE-TTTTEEEEEETTSEEEEEETTS-CE-E
T ss_pred eeEEEeCCCCCCEEEEEeCCCEEEEEECCCCceEEEeccCCCCCCeEEEEEC-CCCCEEEEECCCCCEEEEECCC-CE-E
Confidence 9999999966789999999999999999965444333334566889999998 7899999999999999999943 21 1
Q ss_pred cccccCCceeEecCCCCeEEEEEccCCC-EEEEEECCCcEEEEECCC----CcEEEEEcccCCCCeEEEEEcC-CCCcEE
Q 003822 536 RGMHYGAGTVTFDEFDQLTSVHVNSMDE-LFLASGYSKNIALYDINS----GRRLQVFADMHKEHINVVKFSN-HSPSIF 609 (793)
Q Consensus 536 ~~~~~~~~~~~~~~~~~V~sv~~s~~~~-~lla~g~Dg~I~IWDl~t----g~~l~~~~~gh~~~V~sv~fsp-dg~~~L 609 (793)
.....|...|.+++|+|++. .+++++.|+.|++||+++ +..+..+. |...|++++|+| ++ .+|
T Consensus 198 --------~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~--~~~~v~~~~~s~~~~-~~l 266 (383)
T 3ei3_B 198 --------FKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMP--HEKPVNAAYFNPTDS-TKL 266 (383)
T ss_dssp --------EEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEE--CSSCEEEEEECTTTS-CEE
T ss_pred --------EEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEec--CCCceEEEEEcCCCC-CEE
Confidence 11224667899999999998 888888999999999998 66777774 999999999999 88 899
Q ss_pred EEEeCCCeEEEEECCCCCccceEEccC-----C-----------CCeEEEEEecCCCEEEEEeCCCeEEEEEcCCCcEEE
Q 003822 610 ATSSFDQDVKLWDLRQKPIQPCYTASS-----S-----------KGNVMVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHL 673 (793)
Q Consensus 610 aTgs~Dg~IrIWDlrt~~~~~~~~l~~-----~-----------~~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~ 673 (793)
++++.|+.|++||++++.......... + ...+.++|+|+|++ +|+.|+.|++||+.+++.+.
T Consensus 267 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~ 344 (383)
T 3ei3_B 267 LTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVH 344 (383)
T ss_dssp EEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEE
T ss_pred EEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceee
Confidence 999999999999999875544433211 1 12233566666665 66789999999999999988
Q ss_pred EEeeecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCC
Q 003822 674 NFGITATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQT 715 (793)
Q Consensus 674 ~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~t 715 (793)
.+.... +...+..++|+|++. +|++|+ ||.| +|||+.+
T Consensus 345 ~l~~~~-~~~~~~~~~~s~~g~-~l~s~s-d~~i-~iw~~~~ 382 (383)
T 3ei3_B 345 QLRDPN-AAGIISLNKFSPTGD-VLASGM-GFNI-LIWNRED 382 (383)
T ss_dssp EECBTT-BCSCCCEEEECTTSS-EEEEEE-TTEE-EEEECC-
T ss_pred eecCCC-CCceEEEEEEecCcc-EEEEec-CCcE-EEEecCC
Confidence 875321 234455669999999 999997 8999 9999875
No 96
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.96 E-value=1.2e-26 Score=280.29 Aligned_cols=246 Identities=14% Similarity=0.178 Sum_probs=207.8
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcc
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSI 535 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~ 535 (793)
|++++|+| ++++|++|+.||.|+|||+.+++.+..+. +|.+.|++++|+ +++.+|++++.||+|++||+.++....
T Consensus 58 v~~~~~s~-~~~~l~~~~~dg~i~vw~~~~~~~~~~~~--~~~~~v~~~~~s-~~~~~l~~~~~dg~i~vw~~~~~~~~~ 133 (814)
T 3mkq_A 58 VRAGKFIA-RKNWIIVGSDDFRIRVFNYNTGEKVVDFE--AHPDYIRSIAVH-PTKPYVLSGSDDLTVKLWNWENNWALE 133 (814)
T ss_dssp EEEEEEEG-GGTEEEEEETTSEEEEEETTTCCEEEEEE--CCSSCEEEEEEC-SSSSEEEEEETTSEEEEEEGGGTSEEE
T ss_pred EEEEEEeC-CCCEEEEEeCCCeEEEEECCCCcEEEEEe--cCCCCEEEEEEe-CCCCEEEEEcCCCEEEEEECCCCceEE
Confidence 99999999 99999999999999999999999988886 899999999998 789999999999999999998753321
Q ss_pred cccccCCceeEecCCCCeEEEEEcc-CCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcC--CCCcEEEEE
Q 003822 536 RGMHYGAGTVTFDEFDQLTSVHVNS-MDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSN--HSPSIFATS 612 (793)
Q Consensus 536 ~~~~~~~~~~~~~~~~~V~sv~~s~-~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fsp--dg~~~LaTg 612 (793)
. ....|...|.+++|+| ++..+++++.||.|++||+.++.....+...|...+.+++|+| ++ .++++|
T Consensus 134 ~--------~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~~~ 204 (814)
T 3mkq_A 134 Q--------TFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDK-PYMITA 204 (814)
T ss_dssp E--------EEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTC-CEEEEE
T ss_pred E--------EEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCC-CEEEEE
Confidence 1 2234567899999999 6678888889999999999998888888755668999999999 77 799999
Q ss_pred eCCCeEEEEECCCCCccceEEccCCCCeE-EEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEe
Q 003822 613 SFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYY 691 (793)
Q Consensus 613 s~Dg~IrIWDlrt~~~~~~~~l~~~~~~v-sv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afs 691 (793)
+.||.|++||++++. ....+.+|...+ +++|+|+|+++++++.||.|++||+.+++....+. .+...+..++|+
T Consensus 205 ~~dg~i~~~d~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~---~~~~~v~~~~~~ 279 (814)
T 3mkq_A 205 SDDLTIKIWDYQTKS--CVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLN---VGLERSWCIATH 279 (814)
T ss_dssp CTTSEEEEEETTTTE--EEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEEC---CSSSSEEEEEEC
T ss_pred eCCCEEEEEECCCCc--EEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee---cCCCcEEEEEEc
Confidence 999999999999874 455556666555 59999999999999999999999999999888775 355689999999
Q ss_pred eCCCeEEEEEeCCCcEEEEEEcCCCcEEE
Q 003822 692 LNGRDYIVSGSCDEHVVRICCAQTGRRLR 720 (793)
Q Consensus 692 pdg~~~L~Sgs~Dg~II~IWDv~tg~~l~ 720 (793)
|+|...+++++.++.+ .+|++..+....
T Consensus 280 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 307 (814)
T 3mkq_A 280 PTGRKNYIASGFDNGF-TVLSLGNDEPTL 307 (814)
T ss_dssp TTCGGGEEEEEETTEE-EEEECSCCSCCE
T ss_pred cCCCceEEEEEeCCCE-EEEEcCCCCcee
Confidence 9997554555556677 899987665443
No 97
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.96 E-value=9.4e-26 Score=239.72 Aligned_cols=240 Identities=13% Similarity=0.208 Sum_probs=201.6
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcc
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSI 535 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~ 535 (793)
|++++|+| ++++|++|+.||+|++||+++++.+..+. +|...+.++.+ ++..+++|+.++.+++|+........
T Consensus 70 V~~v~~~~-~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~--~h~~~~~~~~~---~~~~l~s~~~~~~~~~~~~~~~~~~~ 143 (318)
T 4ggc_A 70 ISSVAWIK-EGNYLAVGTSSAEVQLWDVQQQKRLRNMT--SHSARVGSLSW---NSYILSSGSRSGHIHHHDVRVAEHHV 143 (318)
T ss_dssp EEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEE--CCSSCEEEEEE---ETTEEEEEETTSEEEEEETTSSSCEE
T ss_pred EEEEEECC-CCCEEEEEECCCcEEEeecCCceeEEEec--CccceEEEeec---CCCEEEEEecCCceEeeecCCCceeE
Confidence 99999999 99999999999999999999999998887 88888888765 46799999999999999998765432
Q ss_pred cccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcE----EEEEcccCCCCeEEEEEcCCCCcEEE-
Q 003822 536 RGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRR----LQVFADMHKEHINVVKFSNHSPSIFA- 610 (793)
Q Consensus 536 ~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~----l~~~~~gh~~~V~sv~fspdg~~~La- 610 (793)
.. ...|...+..+.+.+.+..+++++.||.|++||+++++. ..... .|.+.|.+++++|+++..+.
T Consensus 144 ~~--------~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~ 214 (318)
T 4ggc_A 144 AT--------LSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFT-QHQGAVKAVAWCPWQSNVLAT 214 (318)
T ss_dssp EE--------EECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEEC-CCCSCEEEEEECTTSTTEEEE
T ss_pred EE--------EcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeec-ccCCceEEEEecCCCCcEEEE
Confidence 22 234557789999999999999999999999999998653 33444 58899999999998866654
Q ss_pred -EEeCCCeEEEEECCCCCccceEEccCCCCeEEEEEecCCCEEEEEe--CCCeEEEEEcCCCcEEEEEeeecCCCCCcEE
Q 003822 611 -TSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLVSA--VDNEVRQLLAVDGRVHLNFGITATGSSQNYT 687 (793)
Q Consensus 611 -Tgs~Dg~IrIWDlrt~~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs--~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s 687 (793)
+++.+++|++||.+..... ........+..+.|+|+++.+++++ .|+.|++||+.+++++.++. .|...|..
T Consensus 215 ~~~~~~~~i~lwd~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~---gH~~~V~~ 289 (318)
T 4ggc_A 215 GGGTSDRHIRIWNVCSGACL--SAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELK---GHTSRVLS 289 (318)
T ss_dssp EECTTTCEEEEEETTTCCEE--EEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEEC---CCSSCEEE
T ss_pred EecCCCCEEEEEeccccccc--ccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEc---CCCCCEEE
Confidence 5667899999999887433 3344455666799999999988765 68999999999999998886 46678999
Q ss_pred EEEeeCCCeEEEEEeCCCcEEEEEEcCCCc
Q 003822 688 RSYYLNGRDYIVSGSCDEHVVRICCAQTGR 717 (793)
Q Consensus 688 ~afspdg~~~L~Sgs~Dg~II~IWDv~tg~ 717 (793)
++|+|+|. +|+|||.||+| +|||+....
T Consensus 290 l~~spdg~-~l~S~s~D~~v-~iWd~~~~d 317 (318)
T 4ggc_A 290 LTMSPDGA-TVASAAADETL-RLWRCFELD 317 (318)
T ss_dssp EEECTTSS-CEEEEETTTEE-EEECCSCCC
T ss_pred EEEcCCCC-EEEEEecCCeE-EEEECCCCC
Confidence 99999999 99999999999 999987653
No 98
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=8.7e-28 Score=261.57 Aligned_cols=243 Identities=11% Similarity=0.061 Sum_probs=185.7
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcccccccC-Cc
Q 003822 465 ISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYG-AG 543 (793)
Q Consensus 465 d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~~~~~~~-~~ 543 (793)
++.++++|+.||+|++||+.+++.+..+. ...|.++.|+| . +++++.|++|++|+.............. ..
T Consensus 47 d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~----~~~v~~~~~~~-~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~ 118 (343)
T 3lrv_A 47 DKWVCMCRCEDGALHFTQLKDSKTITTIT----TPNPRTGGEHP-A---IISRGPCNRLLLLYPGNQITILDSKTNKVLR 118 (343)
T ss_dssp EEEEEEEEEETTEEEEEEESSSSCEEEEE----EECCCTTCCCC-S---EEEECSTTEEEEEETTTEEEEEETTTCCEEE
T ss_pred CCCEEEEECCCCcEEEEECCCCcEEEEEe----cCCceeeeeCC-c---eEEecCCCeEEEEEccCceEEeecCCcceeE
Confidence 67899999999999999999998887775 35677788873 3 9999999999999887522111100000 11
Q ss_pred eeEecCCCCeEEEEEcc--CCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeCCCeEEEE
Q 003822 544 TVTFDEFDQLTSVHVNS--MDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLW 621 (793)
Q Consensus 544 ~~~~~~~~~V~sv~~s~--~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~Dg~IrIW 621 (793)
.....|..+|.+++++| ++..+++++.||+|++||+++++.+......|...|++++|+|++ .+|++|+.||.|++|
T Consensus 119 ~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg-~~lasg~~dg~i~iw 197 (343)
T 3lrv_A 119 EIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDS-LLLALYSPDGILDVY 197 (343)
T ss_dssp EEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTS-CEEEEECTTSCEEEE
T ss_pred EeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCC-CEEEEEcCCCEEEEE
Confidence 22234557899999999 899999999999999999999999877754567789999999999 899999999999999
Q ss_pred ECCCCCccceEEccC-CCCeE-EEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCc--EEEEEeeCCCeE
Q 003822 622 DLRQKPIQPCYTASS-SKGNV-MVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQN--YTRSYYLNGRDY 697 (793)
Q Consensus 622 Dlrt~~~~~~~~l~~-~~~~v-sv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v--~s~afspdg~~~ 697 (793)
|++++.... ..+.. |...+ +++|+|+|.+|++++ |+.|++||+++++....+.....+...+ ..++|+|+|+ +
T Consensus 198 d~~~~~~~~-~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~ 274 (343)
T 3lrv_A 198 NLSSPDQAS-SRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGK-N 274 (343)
T ss_dssp ESSCTTSCC-EECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSS-E
T ss_pred ECCCCCCCc-cEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCC-E
Confidence 999975431 34444 55555 699999999999999 5599999999987654433211111112 4699999999 9
Q ss_pred EEEEeC-CCcEEEEEEcCCCcEEE
Q 003822 698 IVSGSC-DEHVVRICCAQTGRRLR 720 (793)
Q Consensus 698 L~Sgs~-Dg~II~IWDv~tg~~l~ 720 (793)
|++++. |+.+ +||++.++....
T Consensus 275 l~~~s~~d~~i-~v~~~~~~~~~~ 297 (343)
T 3lrv_A 275 MIAYSNESNSL-TIYKFDKKTKNW 297 (343)
T ss_dssp EEEEETTTTEE-EEEEECTTTCSE
T ss_pred EEEecCCCCcE-EEEEEcccccce
Confidence 999888 9999 999997765544
No 99
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.95 E-value=1.1e-25 Score=247.82 Aligned_cols=268 Identities=12% Similarity=0.083 Sum_probs=216.4
Q ss_pred CEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEE-EEEEcCCcEEEEEcCCCCCcccccccCCcee
Q 003822 467 CLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKL-IAGSDNGSLKLYDIRHMPPSIRGMHYGAGTV 545 (793)
Q Consensus 467 ~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~L-asgs~DgtV~vWDl~~~~~~~~~~~~~~~~~ 545 (793)
.++++++.|+.|++||+.+++.+..+. .| ..+.+++|+ ++++++ ++++.|++|++||+.+++. ..
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~--~~-~~~~~~~~s-~dg~~l~~~~~~d~~i~v~d~~~~~~----------~~ 68 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIP--VG-SNPMGAVIS-PDGTKVYVANAHSNDVSIIDTATNNV----------IA 68 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEE--CS-SSEEEEEEC-TTSSEEEEEEGGGTEEEEEETTTTEE----------EE
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEee--cC-CCcceEEEC-CCCCEEEEECCCCCeEEEEECCCCeE----------EE
Confidence 478899999999999999999988876 44 458999998 688766 6777999999999988654 22
Q ss_pred EecCCCCeEEEEEccCCCEEEEEE-CCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEECC
Q 003822 546 TFDEFDQLTSVHVNSMDELFLASG-YSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLR 624 (793)
Q Consensus 546 ~~~~~~~V~sv~~s~~~~~lla~g-~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~Dg~IrIWDlr 624 (793)
.+.+...+.+++|+|++..+++++ .++.|++||+.+++.+..+. +...+.+++|+|++..++++++.|+.|++||++
T Consensus 69 ~~~~~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~ 146 (391)
T 1l0q_A 69 TVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVK--TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTV 146 (391)
T ss_dssp EEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE--CSSSEEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred EEECCCCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEe--CCCCcceEEECCCCCEEEEEeCCCCEEEEEECC
Confidence 333445899999999999887777 56999999999999988887 456789999999994444788889999999999
Q ss_pred CCCccceEEccCCCCeEEEEEecCCCEE-EEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCCCeEEEEEe-
Q 003822 625 QKPIQPCYTASSSKGNVMVCFSPDDHYL-LVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNGRDYIVSGS- 702 (793)
Q Consensus 625 t~~~~~~~~l~~~~~~vsv~fSpdg~~L-asgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs- 702 (793)
+++. ...+..+..+..++|+|+|+++ ++++.++.|++||+.+++....+. +...+..++|+|+|+ ++++++
T Consensus 147 ~~~~--~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~----~~~~~~~~~~~~~g~-~l~~~~~ 219 (391)
T 1l0q_A 147 TKAV--INTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK----VEAAPSGIAVNPEGT-KAYVTNV 219 (391)
T ss_dssp TTEE--EEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE----CSSEEEEEEECTTSS-EEEEEEE
T ss_pred CCcE--EEEEecCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe----cCCCccceEECCCCC-EEEEEec
Confidence 8743 4445556677789999999988 566788999999999998877664 345678899999999 677666
Q ss_pred --CCCcEEEEEEcCCCcEEEeeeecCCCCCccceeeeccCCccccCCccEEEEEEcCCCCceeeEeeEEEeCCCcEEEEc
Q 003822 703 --CDEHVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKSEIVKVNLLASTDHCDKECS 780 (793)
Q Consensus 703 --~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~~~~iv~~~ltaS~Dg~VkvW~ 780 (793)
.++.| ++||+.+++.+. .+..+. .+.+++|+|++...++ +++.|+.|++|+
T Consensus 220 ~~~~~~v-~~~d~~~~~~~~--~~~~~~--------------------~~~~~~~s~dg~~l~~----s~~~d~~v~v~d 272 (391)
T 1l0q_A 220 DKYFNTV-SMIDTGTNKITA--RIPVGP--------------------DPAGIAVTPDGKKVYV----ALSFXNTVSVID 272 (391)
T ss_dssp CSSCCEE-EEEETTTTEEEE--EEECCS--------------------SEEEEEECTTSSEEEE----EETTTTEEEEEE
T ss_pred CcCCCcE-EEEECCCCeEEE--EEecCC--------------------CccEEEEccCCCEEEE----EcCCCCEEEEEE
Confidence 68899 999999998887 555443 3678999997654445 678899999999
Q ss_pred CCCC
Q 003822 781 HGQH 784 (793)
Q Consensus 781 ~~~~ 784 (793)
....
T Consensus 273 ~~~~ 276 (391)
T 1l0q_A 273 TATN 276 (391)
T ss_dssp TTTT
T ss_pred CCCC
Confidence 8643
No 100
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.95 E-value=2.6e-26 Score=252.15 Aligned_cols=283 Identities=11% Similarity=0.093 Sum_probs=194.3
Q ss_pred ceEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeC--CCCEEEEEEcCCcEEEEEcCCCC
Q 003822 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKK--YPSKLIAGSDNGSLKLYDIRHMP 532 (793)
Q Consensus 455 ~V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~--~g~~Lasgs~DgtV~vWDl~~~~ 532 (793)
.|++++|+|.++.++++|+.||.|++||+.+++....+. +...+.++.|++. ++.++++++.||.|++||+++++
T Consensus 101 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~ 177 (408)
T 4a11_B 101 SVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN---FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGS 177 (408)
T ss_dssp CEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE---CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSC
T ss_pred cEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc---CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcc
Confidence 499999999778899999999999999999999887774 5678999999743 44599999999999999998865
Q ss_pred CcccccccCCceeEecCCCCeEEEEEccCCCE-EEEEECCCcEEEEECCCCc-EEEEEc--------------ccCCCCe
Q 003822 533 PSIRGMHYGAGTVTFDEFDQLTSVHVNSMDEL-FLASGYSKNIALYDINSGR-RLQVFA--------------DMHKEHI 596 (793)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~-lla~g~Dg~I~IWDl~tg~-~l~~~~--------------~gh~~~V 596 (793)
... ....|...|.+++|+|++.. +++++.||.|++||++++. .+..+. .+|...|
T Consensus 178 ~~~---------~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 248 (408)
T 4a11_B 178 CSH---------ILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKV 248 (408)
T ss_dssp CCE---------EECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCE
T ss_pred eee---------eecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCce
Confidence 421 12235678999999999885 7788899999999998865 444441 2588999
Q ss_pred EEEEEcCCCCcEEEEEeCCCeEEEEECCCCCccceEEccC---CCCeEE-EEEecCCCEEEEEeCCCeEEEEEcCCCcEE
Q 003822 597 NVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASS---SKGNVM-VCFSPDDHYLLVSAVDNEVRQLLAVDGRVH 672 (793)
Q Consensus 597 ~sv~fspdg~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~---~~~~vs-v~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~ 672 (793)
++++|+|++ .+|++++.||.|++||++++.......... ...... ......+..+++++.++.|++||+.+++.+
T Consensus 249 ~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~ 327 (408)
T 4a11_B 249 NGLCFTSDG-LHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQI 327 (408)
T ss_dssp EEEEECTTS-SEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEE
T ss_pred eEEEEcCCC-CEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcce
Confidence 999999998 899999999999999999875432221111 111112 222334556677777999999999999998
Q ss_pred EEEeeecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCCCCccceeeeccCCccccCCccEEE
Q 003822 673 LNFGITATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILA 752 (793)
Q Consensus 673 ~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~s 752 (793)
..+. .+...+..++|+|++. +|++|+.||.| ++||+.+++.+. ....+. ..
T Consensus 328 ~~~~---~~~~~v~~~~~s~~~~-~l~s~~~dg~i-~iw~~~~~~~~~--~~~~~~----------------------~~ 378 (408)
T 4a11_B 328 TMLK---GHYKTVDCCVFQSNFQ-ELYSGSRDCNI-LAWVPSLYEPVP--DDDETT----------------------TK 378 (408)
T ss_dssp EEEC---CCSSCEEEEEEETTTT-EEEEEETTSCE-EEEEECC-------------------------------------
T ss_pred eeec---cCCCeEEEEEEcCCCC-EEEEECCCCeE-EEEeCCCCCccC--CCCceE----------------------ec
Confidence 8875 4667899999999998 99999999999 999999998876 332222 11
Q ss_pred EEEcCCCCceeeEeeEEEeCCCcEEEEcCCC
Q 003822 753 AYTRPSSKSEIVKVNLLASTDHCDKECSHGQ 783 (793)
Q Consensus 753 va~~P~~~~~iv~~~ltaS~Dg~VkvW~~~~ 783 (793)
..+.|....... .++.++.+++|..++
T Consensus 379 ~~~~~~~~~~~~----~~~~~~~~~~W~~~~ 405 (408)
T 4a11_B 379 SQLNPAFEDAWS----SSDEEGGTSAWSHPQ 405 (408)
T ss_dssp -------------------------------
T ss_pred cccccccceeec----ccCccCceeecCCcc
Confidence 223332222222 567789999998764
No 101
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.95 E-value=1.2e-27 Score=269.40 Aligned_cols=268 Identities=14% Similarity=0.131 Sum_probs=198.5
Q ss_pred CCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcccccccCCceeEecCCCCeEEEEEccC-CCEEEEEECCCcE
Q 003822 496 GAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSM-DELFLASGYSKNI 574 (793)
Q Consensus 496 ~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~-~~~lla~g~Dg~I 574 (793)
+|...|++|+|+|.++++||+|+.||+|++||+.++..... .....|.+.|++++|+|. +..+++++.||+|
T Consensus 117 ~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~-------~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v 189 (435)
T 4e54_B 117 PFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTF-------IKGIGAGGSITGLKFNPLNTNQFYASSMEGTT 189 (435)
T ss_dssp ECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEE-------ECCCSSSCCCCEEEECSSCTTEEEEECSSSCE
T ss_pred CCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeE-------EEccCCCCCEEEEEEeCCCCCEEEEEeCCCEE
Confidence 57788999999977888999999999999999987654211 111246688999999984 6788888899999
Q ss_pred EEEECCCCcEEEEEc-ccCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEECCCCCccceEEccCCCCeE-EEEEecCCC-E
Q 003822 575 ALYDINSGRRLQVFA-DMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDH-Y 651 (793)
Q Consensus 575 ~IWDl~tg~~l~~~~-~gh~~~V~sv~fspdg~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~~~~v-sv~fSpdg~-~ 651 (793)
++||++++....... ..+...+.+++|+|++ .+|++|+.||.|++||++.. .+..+.+|...+ +++|+|++. +
T Consensus 190 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~g~~dg~i~~wd~~~~---~~~~~~~h~~~v~~v~~~p~~~~~ 265 (435)
T 4e54_B 190 RLQDFKGNILRVFASSDTINIWFCSLDVSASS-RMVVTGDNVGNVILLNMDGK---ELWNLRMHKKKVTHVALNPCCDWF 265 (435)
T ss_dssp EEEETTSCEEEEEECCSSCSCCCCCEEEETTT-TEEEEECSSSBEEEEESSSC---BCCCSBCCSSCEEEEEECTTCSSE
T ss_pred EEeeccCCceeEEeccCCCCccEEEEEECCCC-CEEEEEeCCCcEeeeccCcc---eeEEEecccceEEeeeecCCCceE
Confidence 999998765443333 1244567899999999 89999999999999999764 344556666655 599999886 7
Q ss_pred EEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCCCCc
Q 003822 652 LLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKGSGT 731 (793)
Q Consensus 652 Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~~~~ 731 (793)
+++|+.|+.|++||+++++....+.....|...+..++|+|+|. +|++|+.||.| +|||+.+++... .+.+|....
T Consensus 266 ~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~-~l~s~~~D~~i-~iwd~~~~~~~~--~~~~~~~~~ 341 (435)
T 4e54_B 266 LATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGA-RLLTTDQKSEI-RVYSASQWDCPL--GLIPHPHRH 341 (435)
T ss_dssp EEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSS-EEEEEESSSCE-EEEESSSSSSEE--EECCCCCCC
T ss_pred EEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCC-eeEEEcCCCEE-EEEECCCCccce--EEecccccc
Confidence 88899999999999998765544443445677899999999999 99999999999 999999999988 777776432
Q ss_pred cceeeeccCCccccCCccEEEEEEcCCCCceeeEeeEEEeCCCcEEEEcCCCC
Q 003822 732 SMFVQSLRGDPFRDFNMSILAAYTRPSSKSEIVKVNLLASTDHCDKECSHGQH 784 (793)
Q Consensus 732 s~~v~sl~g~~~~~h~~~V~sva~~P~~~~~iv~~~ltaS~Dg~VkvW~~~~~ 784 (793)
......+... + .....+..+++++++...++ .+..+++|++|+....
T Consensus 342 ~~~~~~~~~~-~-~~~~~~~~~~~~~d~~~~~~----~~~~~~~i~iwd~~~g 388 (435)
T 4e54_B 342 FQHLTPIKAA-W-HPRYNLIVVGRYPDPNFKSC----TPYELRTIDVFDGNSG 388 (435)
T ss_dssp CSSSCCCBCE-E-CSSSSCEEEECCCCTTSCCS----STTCCCCEEEECSSSC
T ss_pred cccceeEEEE-E-cCCCCEEEEEEcCCCCeEEE----EecCCCEEEEEECCCC
Confidence 2222221110 0 11223455555554433333 4456678999987654
No 102
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.95 E-value=1.2e-26 Score=257.62 Aligned_cols=249 Identities=14% Similarity=0.155 Sum_probs=203.1
Q ss_pred ceEEEEEeCCCCCEEEEEeCCCeEEEEECCCC-------eEEEEEeccCCCCCEEEEEEeeCCC-CEEEEEEcCCcEEEE
Q 003822 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENE-------NIVSYIPSFGAMNSVLGLCWLKKYP-SKLIAGSDNGSLKLY 526 (793)
Q Consensus 455 ~V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~-------~~i~~l~~~~h~~~V~sv~fs~~~g-~~Lasgs~DgtV~vW 526 (793)
.|++++|+|.++.+|++|+.||+|+|||+.++ +.+..+. +|...|.+++|+ +++ ++|++|+.||+|++|
T Consensus 83 ~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~--~h~~~v~~~~~~-p~~~~~l~s~~~dg~i~iw 159 (402)
T 2aq5_A 83 PVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLE--GHTKRVGIVAWH-PTAQNVLLSAGCDNVILVW 159 (402)
T ss_dssp CEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEE--CCSSCEEEEEEC-SSBTTEEEEEETTSCEEEE
T ss_pred CEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEec--CCCCeEEEEEEC-cCCCCEEEEEcCCCEEEEE
Confidence 39999999977899999999999999999887 4455555 899999999998 555 799999999999999
Q ss_pred EcCCCCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCC-eEEEEEcCCC
Q 003822 527 DIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEH-INVVKFSNHS 605 (793)
Q Consensus 527 Dl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~-V~sv~fspdg 605 (793)
|+++++...... ...|...|.+++|+|++..+++++.||.|++||+++++.+..+..+|.+. +.++.|+|++
T Consensus 160 d~~~~~~~~~~~-------~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (402)
T 2aq5_A 160 DVGTGAAVLTLG-------PDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEG 232 (402)
T ss_dssp ETTTTEEEEEEC-------TTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTT
T ss_pred ECCCCCccEEEe-------cCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCC
Confidence 999865421100 02356789999999999999999999999999999999999983368776 8999999998
Q ss_pred CcEEEEE---eCCCeEEEEECCCCCc-cceEEccCCCCeEEEEEecCCCEEEE-EeCCCeEEEEEcCCCcE-EEEEeeec
Q 003822 606 PSIFATS---SFDQDVKLWDLRQKPI-QPCYTASSSKGNVMVCFSPDDHYLLV-SAVDNEVRQLLAVDGRV-HLNFGITA 679 (793)
Q Consensus 606 ~~~LaTg---s~Dg~IrIWDlrt~~~-~~~~~l~~~~~~vsv~fSpdg~~Las-gs~Dg~I~IwDl~tg~~-~~~l~~~~ 679 (793)
.++++| +.|+.|++||+++... ...........+..++|+|+|++|++ |+.||.|++||+.+++. +..+....
T Consensus 233 -~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~ 311 (402)
T 2aq5_A 233 -KILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFS 311 (402)
T ss_dssp -EEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEEC
T ss_pred -cEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccc
Confidence 899998 7899999999998653 33445555666778999999999975 45799999999999884 44454333
Q ss_pred CCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEE
Q 003822 680 TGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRL 719 (793)
Q Consensus 680 ~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l 719 (793)
+...+..++|+|++. ++++ .++.+ ++|++.+++..
T Consensus 312 -~~~~v~~~~~sp~~~-~~~s--~~~~~-~~~~l~~~~~~ 346 (402)
T 2aq5_A 312 -SKESQRGMGYMPKRG-LEVN--KCEIA-RFYKLHERKCE 346 (402)
T ss_dssp -CSSCCSEEEECCGGG-SCGG--GTEEE-EEEEEETTEEE
T ss_pred -cCCcccceEEecccc-ccee--cceeE-EEEEcCCCcEE
Confidence 567899999999998 6554 56677 99999987654
No 103
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.95 E-value=1.9e-26 Score=259.59 Aligned_cols=250 Identities=20% Similarity=0.265 Sum_probs=200.0
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCC----------CeEEEEEeccCCCCCEEEEEEeeCCCC-EEEEEEcCCcEE
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHEN----------ENIVSYIPSFGAMNSVLGLCWLKKYPS-KLIAGSDNGSLK 524 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t----------~~~i~~l~~~~h~~~V~sv~fs~~~g~-~Lasgs~DgtV~ 524 (793)
|++++|+|.++.+|++|+.||.|++|++.+ ......+. +|...|.+++|+ +++. +|++|+.||+|+
T Consensus 131 v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~l~~~-~~~~~~l~s~~~dg~i~ 207 (430)
T 2xyi_A 131 VNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLR--GHQKEGYGLSWN-PNLNGYLLSASDDHTIC 207 (430)
T ss_dssp CSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEE--CCSSCCCCEEEC-TTSTTEEEEECTTSCEE
T ss_pred EEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEec--CCCCCeEEEEeC-CCCCCeEEEEeCCCeEE
Confidence 899999994478999999999999999976 45555555 899999999998 5555 999999999999
Q ss_pred EEEcCCCCCcccccccCCceeEecCCCCeEEEEEcc-CCCEEEEEECCCcEEEEECCCC---cEEEEEcccCCCCeEEEE
Q 003822 525 LYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNS-MDELFLASGYSKNIALYDINSG---RRLQVFADMHKEHINVVK 600 (793)
Q Consensus 525 vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~-~~~~lla~g~Dg~I~IWDl~tg---~~l~~~~~gh~~~V~sv~ 600 (793)
+||+..+........ .......|...|.+++|+| .+..+++++.||.|++||++++ +.+..+. +|...|++++
T Consensus 208 vwd~~~~~~~~~~~~--~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~-~~~~~v~~i~ 284 (430)
T 2xyi_A 208 LWDINATPKEHRVID--AKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVD-AHTAEVNCLS 284 (430)
T ss_dssp EEETTSCCBGGGEEE--CSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEE-CCSSCEEEEE
T ss_pred EEeCCCCCCCCceec--cceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEee-cCCCCeEEEE
Confidence 999988543111110 0111225667899999999 4567777788999999999987 5777777 6999999999
Q ss_pred EcCCCCcEEEEEeCCCeEEEEECCCCCccceEEccCCCCeE-EEEEecCCC-EEEEEeCCCeEEEEEcCCC---------
Q 003822 601 FSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDH-YLLVSAVDNEVRQLLAVDG--------- 669 (793)
Q Consensus 601 fspdg~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~~~~v-sv~fSpdg~-~Lasgs~Dg~I~IwDl~tg--------- 669 (793)
|+|+++.++++|+.||.|++||+++.. .++..+..|...+ +++|+|+++ ++++++.||.|++||+...
T Consensus 285 ~~p~~~~~l~tg~~dg~v~vwd~~~~~-~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 363 (430)
T 2xyi_A 285 FNPYSEFILATGSADKTVALWDLRNLK-LKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDA 363 (430)
T ss_dssp ECSSCTTEEEEEETTSEEEEEETTCTT-SCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHH
T ss_pred eCCCCCCEEEEEeCCCeEEEEeCCCCC-CCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCcccc
Confidence 999996689999999999999999843 3445555555555 699999995 6899999999999999872
Q ss_pred -----cEEEEEeeecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCC
Q 003822 670 -----RVHLNFGITATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTG 716 (793)
Q Consensus 670 -----~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg 716 (793)
+.+..+ ..+...+..++|+|++..+|++++.||.| +||++..+
T Consensus 364 ~~~~~~~~~~~---~~h~~~v~~~~~~p~~~~~l~s~s~dg~i-~iw~~~~~ 411 (430)
T 2xyi_A 364 EDGPPELLFIH---GGHTAKISDFSWNPNEPWIICSVSEDNIM-QVWQMAEN 411 (430)
T ss_dssp HHCCTTEEEEC---CCCSSCEEEEEECSSSTTEEEEEETTSEE-EEEEECHH
T ss_pred ccCCcceEEEc---CCCCCCceEEEECCCCCCEEEEEECCCCE-EEeEcccc
Confidence 343333 34566799999999998789999999999 99998754
No 104
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.95 E-value=7.5e-26 Score=252.52 Aligned_cols=278 Identities=9% Similarity=0.077 Sum_probs=221.7
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEe---ccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCC
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIP---SFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMP 532 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~---~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~ 532 (793)
+.+++|+| ++.++++++.++.|++||+.+++....+. ..+|...|.+++|+ +++.++++++.|+.|++||+++++
T Consensus 125 ~~~~~~s~-~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~s~~~d~~v~~~d~~~~~ 202 (433)
T 3bws_A 125 PKSVRFID-NTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIP-EHNELWVSQMQANAVHVFDLKTLA 202 (433)
T ss_dssp BCCCEESS-SSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEG-GGTEEEEEEGGGTEEEEEETTTCC
T ss_pred ceEEEEeC-CCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEc-CCCEEEEEECCCCEEEEEECCCce
Confidence 56899999 88899999999999999999998876443 23788899999995 788999999999999999998765
Q ss_pred CcccccccCCceeEecCCCCeEEEEEccCCCEEEEEE-CCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEE
Q 003822 533 PSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASG-YSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFAT 611 (793)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g-~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaT 611 (793)
.... ...+...+.+++|+|++..+++++ .++.|++||+++++.+..+. +...+.+++|+|++ ..+++
T Consensus 203 ~~~~---------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~--~~~~~~~~~~~~~g-~~l~~ 270 (433)
T 3bws_A 203 YKAT---------VDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTD--KIGLPRGLLLSKDG-KELYI 270 (433)
T ss_dssp EEEE---------EECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECC--CCSEEEEEEECTTS-SEEEE
T ss_pred EEEE---------EcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEec--CCCCceEEEEcCCC-CEEEE
Confidence 4211 113456799999999999887777 68999999999999988887 34569999999999 67777
Q ss_pred Ee--------CCCeEEEEECCCCCccceEEccCCCCeEEEEEecCCCEE-EEEeCCCeEEEEEcCCCcEEEEEeeecCCC
Q 003822 612 SS--------FDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYL-LVSAVDNEVRQLLAVDGRVHLNFGITATGS 682 (793)
Q Consensus 612 gs--------~Dg~IrIWDlrt~~~~~~~~l~~~~~~vsv~fSpdg~~L-asgs~Dg~I~IwDl~tg~~~~~l~~~~~~~ 682 (793)
++ .||.|++||+++++..... .....+..++|+|+|+++ ++++.|+.|++||+.+++....+. +.
T Consensus 271 ~~~~~~~~~~~dg~i~~~d~~~~~~~~~~--~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~----~~ 344 (433)
T 3bws_A 271 AQFSASNQESGGGRLGIYSMDKEKLIDTI--GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP----VF 344 (433)
T ss_dssp EEEESCTTCSCCEEEEEEETTTTEEEEEE--EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE----CS
T ss_pred EECCCCccccCCCeEEEEECCCCcEEeec--cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec----CC
Confidence 77 5889999999987443332 222355579999999866 555789999999999998877764 45
Q ss_pred CCcEEEEEeeCCCeEEEEEeC---------------CCcEEEEEEcCCCcEEEeeeecCCCCCccceeeeccCCccccCC
Q 003822 683 SQNYTRSYYLNGRDYIVSGSC---------------DEHVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFN 747 (793)
Q Consensus 683 ~~v~s~afspdg~~~L~Sgs~---------------Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~ 747 (793)
..+..++|+|+|+ ++++++. ||.| ++||+.+++.+. .+.++.
T Consensus 345 ~~~~~~~~s~dg~-~l~~~~~~~~~~~~~~~~~g~~dg~v-~~~d~~~~~~~~--~~~~~~------------------- 401 (433)
T 3bws_A 345 DKPNTIALSPDGK-YLYVSCRGPNHPTEGYLKKGLVLGKV-YVIDTTTDTVKE--FWEAGN------------------- 401 (433)
T ss_dssp SSEEEEEECTTSS-EEEEEECCCCCTTTCTTSCCSSCCEE-EEEETTTTEEEE--EEECSS-------------------
T ss_pred CCCCeEEEcCCCC-EEEEEecCCCccccccccccccceEE-EEEECCCCcEEE--EecCCC-------------------
Confidence 5688999999998 7777665 5688 999999999888 554432
Q ss_pred ccEEEEEEcCCCCceeeEeeEEEe-CCCcEEEEcCC
Q 003822 748 MSILAAYTRPSSKSEIVKVNLLAS-TDHCDKECSHG 782 (793)
Q Consensus 748 ~~V~sva~~P~~~~~iv~~~ltaS-~Dg~VkvW~~~ 782 (793)
.+.+++|+|++.. ++ +++ .|+.|++|+..
T Consensus 402 -~~~~~~~s~dg~~-l~----~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 402 -QPTGLDVSPDNRY-LV----ISDFLDHQIRVYRRD 431 (433)
T ss_dssp -SEEEEEECTTSCE-EE----EEETTTTEEEEEEET
T ss_pred -CCceEEEcCCCCE-EE----EEECCCCeEEEEEec
Confidence 4789999997533 33 444 59999999875
No 105
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.3e-25 Score=237.70 Aligned_cols=235 Identities=20% Similarity=0.242 Sum_probs=196.2
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCC---eEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCC
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENE---NIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMP 532 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~---~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~ 532 (793)
|++++|+| ++.++++|+.||.|++|++... +....+. +|...|.+++| +++++++++.||.|++||...
T Consensus 62 v~~~~~~~-~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~---~~~~l~~~~~d~~i~~~d~~~-- 133 (313)
T 3odt_A 62 LNSVCYDS-EKELLLFGGKDTMINGVPLFATSGEDPLYTLI--GHQGNVCSLSF---QDGVVISGSWDKTAKVWKEGS-- 133 (313)
T ss_dssp EEEEEEET-TTTEEEEEETTSCEEEEETTCCTTSCC-CEEC--CCSSCEEEEEE---ETTEEEEEETTSEEEEEETTE--
T ss_pred EEEEEECC-CCCEEEEecCCCeEEEEEeeecCCCCcccchh--hcccCEEEEEe---cCCEEEEEeCCCCEEEEcCCc--
Confidence 89999999 9999999999999999998654 4454554 89999999998 467999999999999999221
Q ss_pred CcccccccCCceeEecCCCCeEEEEEcc-CCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEE
Q 003822 533 PSIRGMHYGAGTVTFDEFDQLTSVHVNS-MDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFAT 611 (793)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~~V~sv~~s~-~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaT 611 (793)
. . .....+...+.++.+.+ .+..+++++.||.|++|| .++....+...|...|.+++|+|++ . +++
T Consensus 134 ~-~--------~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~-~-~~~ 200 (313)
T 3odt_A 134 L-V--------YNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDG-H-FIS 200 (313)
T ss_dssp E-E--------EEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETT-E-EEE
T ss_pred E-E--------EecccCCCceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCC-e-EEE
Confidence 1 1 11234567899999988 788888899999999999 5667777774499999999999998 5 999
Q ss_pred EeCCCeEEEEECCCCCccceEEccCCCCeE-EEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEE
Q 003822 612 SSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSY 690 (793)
Q Consensus 612 gs~Dg~IrIWDlrt~~~~~~~~l~~~~~~v-sv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~af 690 (793)
++.||.|++||+++++ .+..+.+|...+ +++|+|+| .+++++.||.|++||+.+++....+. .+...+..++|
T Consensus 201 ~~~dg~i~i~d~~~~~--~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~---~~~~~i~~~~~ 274 (313)
T 3odt_A 201 CSNDGLIKLVDMHTGD--VLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVIT---LPAISIWSVDC 274 (313)
T ss_dssp EETTSEEEEEETTTCC--EEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEE---CSSSCEEEEEE
T ss_pred ccCCCeEEEEECCchh--hhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEe---ccCceEEEEEE
Confidence 9999999999999874 445555565555 59999999 58999999999999999999888876 35567999999
Q ss_pred eeCCCeEEEEEeCCCcEEEEEEcCCCcEEE
Q 003822 691 YLNGRDYIVSGSCDEHVVRICCAQTGRRLR 720 (793)
Q Consensus 691 spdg~~~L~Sgs~Dg~II~IWDv~tg~~l~ 720 (793)
+|++. +++++.||.| ++||+.+++.+.
T Consensus 275 ~~~~~--~~~~~~dg~i-~iw~~~~~~~~~ 301 (313)
T 3odt_A 275 MSNGD--IIVGSSDNLV-RIFSQEKSRWAS 301 (313)
T ss_dssp CTTSC--EEEEETTSCE-EEEESCGGGCCC
T ss_pred ccCCC--EEEEeCCCcE-EEEeCCCCceee
Confidence 99997 6679999999 999999988776
No 106
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.4e-26 Score=279.81 Aligned_cols=248 Identities=15% Similarity=0.155 Sum_probs=201.1
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCC--eEEEEEeccCCCCCEEEEEEeeC-CCCEEEEEEcCCcEEEEEcCCCC
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENE--NIVSYIPSFGAMNSVLGLCWLKK-YPSKLIAGSDNGSLKLYDIRHMP 532 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~--~~i~~l~~~~h~~~V~sv~fs~~-~g~~Lasgs~DgtV~vWDl~~~~ 532 (793)
|++++|+| ++++|++|+.||+|+|||+.++ +....+. +|.+.|++++|+++ ++++|++|+.||+|++||+.+++
T Consensus 12 V~~l~~s~-dg~~latg~~dg~I~vwd~~~~~~~~~~~l~--~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~ 88 (753)
T 3jro_A 12 IHDAVLDY-YGKRLATCSSDKTIKIFEVEGETHKLIDTLT--GHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGR 88 (753)
T ss_dssp EEEECCCS-SSCCEEEEETTTEEEEEEEETTEEEEEEEEC--CCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTE
T ss_pred eEEEEECC-CCCeEEEEECCCcEEEEecCCCCCccceecc--CCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCc
Confidence 99999999 8999999999999999999854 4444444 89999999999743 28999999999999999998864
Q ss_pred CcccccccCCceeEecCCCCeEEEEEccC--CCEEEEEECCCcEEEEECCCCc--EEEEEcccCCCCeEEEEEcCC----
Q 003822 533 PSIRGMHYGAGTVTFDEFDQLTSVHVNSM--DELFLASGYSKNIALYDINSGR--RLQVFADMHKEHINVVKFSNH---- 604 (793)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~~V~sv~~s~~--~~~lla~g~Dg~I~IWDl~tg~--~l~~~~~gh~~~V~sv~fspd---- 604 (793)
... ......|...|.+++|+|+ +..+++++.||.|++||++++. ....+. +|...|.+++|+|.
T Consensus 89 ~~~-------~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~-~~~~~v~~l~~~p~~~~~ 160 (753)
T 3jro_A 89 WSQ-------IAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIID-AHAIGVNSASWAPATIEE 160 (753)
T ss_dssp EEE-------EEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEE-CCSSCEEEEEECCCC---
T ss_pred ccc-------cccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEee-cCCCceEEEEecCccccc
Confidence 210 0112346678999999998 8899999999999999999873 344555 69999999999994
Q ss_pred ---------CCcEEEEEeCCCeEEEEECCCCCc--cceEEccCCCCeE-EEEEecC---CCEEEEEeCCCeEEEEEcCCC
Q 003822 605 ---------SPSIFATSSFDQDVKLWDLRQKPI--QPCYTASSSKGNV-MVCFSPD---DHYLLVSAVDNEVRQLLAVDG 669 (793)
Q Consensus 605 ---------g~~~LaTgs~Dg~IrIWDlrt~~~--~~~~~l~~~~~~v-sv~fSpd---g~~Lasgs~Dg~I~IwDl~tg 669 (793)
+ .++++|+.||.|++||++++.. .....+.+|...+ +++|+|+ |+++++|+.||.|++||+.++
T Consensus 161 ~~~~~~~~d~-~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~ 239 (753)
T 3jro_A 161 DGEHNGTKES-RKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNE 239 (753)
T ss_dssp ------CGGG-CCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSS
T ss_pred ccccccCCCC-CEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCC
Confidence 5 7999999999999999987643 3344556666655 5999999 999999999999999999887
Q ss_pred cEEE--EEeeecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCc
Q 003822 670 RVHL--NFGITATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGR 717 (793)
Q Consensus 670 ~~~~--~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~ 717 (793)
.... .......+...+..++|+|+|. ++++|+.||.| ++|++.++.
T Consensus 240 ~~~~~~~~~~~~~~~~~v~~l~~spdg~-~l~s~s~Dg~I-~vwd~~~~~ 287 (753)
T 3jro_A 240 QGPWKKTLLKEEKFPDVLWRASWSLSGN-VLALSGGDNKV-TLWKENLEG 287 (753)
T ss_dssp SSCCBCCBSSSSCCSSCCCCEEECTTTC-CEEEECSSSCE-ECCBCCSSS
T ss_pred CCcceeEEeccCCCCCceEEEEEcCCCC-EEEEEcCCCEE-EEEecCCCC
Confidence 4211 1112223566788999999998 99999999999 999998654
No 107
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.95 E-value=1.9e-24 Score=237.84 Aligned_cols=247 Identities=9% Similarity=0.095 Sum_probs=200.0
Q ss_pred eEEEEEeCCCCCEE-EEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEE-EEcCCcEEEEEcCCCCC
Q 003822 456 PRQFEYHPSISCLM-VFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIA-GSDNGSLKLYDIRHMPP 533 (793)
Q Consensus 456 V~~vafsP~d~~~L-asgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Las-gs~DgtV~vWDl~~~~~ 533 (793)
+.+++|+| +++.+ ++++.|++|++||+.+++.+..+.. + ..+.+++|+ ++++++++ ++.++.|++||+.+++.
T Consensus 34 ~~~~~~s~-dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~--~-~~v~~~~~s-pdg~~l~~~~~~~~~v~v~d~~~~~~ 108 (391)
T 1l0q_A 34 PMGAVISP-DGTKVYVANAHSNDVSIIDTATNNVIATVPA--G-SSPQGVAVS-PDGKQVYVTNMASSTLSVIDTTSNTV 108 (391)
T ss_dssp EEEEEECT-TSSEEEEEEGGGTEEEEEETTTTEEEEEEEC--S-SSEEEEEEC-TTSSEEEEEETTTTEEEEEETTTTEE
T ss_pred cceEEECC-CCCEEEEECCCCCeEEEEECCCCeEEEEEEC--C-CCccceEEC-CCCCEEEEEECCCCEEEEEECCCCeE
Confidence 89999999 77765 6777999999999999999888763 3 389999998 68887754 45679999999988654
Q ss_pred cccccccCCceeEecCCCCeEEEEEccCCCEEEEE-ECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEE
Q 003822 534 SIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLAS-GYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATS 612 (793)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~-g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTg 612 (793)
...+.+...+.+++|+|++..++++ +.++.|++||+.+++.+..+. +...+.+++|+|++..+++++
T Consensus 109 ----------~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~--~~~~~~~~~~~~dg~~l~~~~ 176 (391)
T 1l0q_A 109 ----------AGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVS--VGRSPKGIAVTPDGTKVYVAN 176 (391)
T ss_dssp ----------EEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE--CCSSEEEEEECTTSSEEEEEE
T ss_pred ----------EEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEe--cCCCcceEEECCCCCEEEEEe
Confidence 1223344678999999999888544 468999999999999998887 335679999999994445788
Q ss_pred eCCCeEEEEECCCCCccceEEccCCCCeEEEEEecCCCEEEEEe---CCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEE
Q 003822 613 SFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLVSA---VDNEVRQLLAVDGRVHLNFGITATGSSQNYTRS 689 (793)
Q Consensus 613 s~Dg~IrIWDlrt~~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs---~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~a 689 (793)
+.|+.|++||+++++.. ..+..+..+..++|+|+|+++++++ .++.|++||+.+++.+..+. .+..+..++
T Consensus 177 ~~~~~v~~~d~~~~~~~--~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~----~~~~~~~~~ 250 (391)
T 1l0q_A 177 FDSMSISVIDTVTNSVI--DTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIP----VGPDPAGIA 250 (391)
T ss_dssp TTTTEEEEEETTTTEEE--EEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEE----CCSSEEEEE
T ss_pred CCCCEEEEEECCCCeEE--EEEecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEe----cCCCccEEE
Confidence 88999999999987433 3444455566799999999999988 68999999999998877775 234578899
Q ss_pred EeeCCCeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCC
Q 003822 690 YYLNGRDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKG 728 (793)
Q Consensus 690 fspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~ 728 (793)
|+|+|+.++++++.|+.+ ++||+.+++.+. .+..+.
T Consensus 251 ~s~dg~~l~~s~~~d~~v-~v~d~~~~~~~~--~~~~~~ 286 (391)
T 1l0q_A 251 VTPDGKKVYVALSFXNTV-SVIDTATNTITA--TMAVGK 286 (391)
T ss_dssp ECTTSSEEEEEETTTTEE-EEEETTTTEEEE--EEECSS
T ss_pred EccCCCEEEEEcCCCCEE-EEEECCCCcEEE--EEECCc
Confidence 999998444788889999 999999999999 776665
No 108
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.95 E-value=6.5e-27 Score=256.23 Aligned_cols=242 Identities=11% Similarity=0.101 Sum_probs=182.9
Q ss_pred CCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCC-CcccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEE
Q 003822 497 AMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMP-PSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIA 575 (793)
Q Consensus 497 h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~-~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~ 575 (793)
+.++|.+++|+ +++++|++|+.||.|++||+.++. .....+ ..|...|.+++|+|++..+++++.|++|+
T Consensus 10 ~~~~v~~~~~s-~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~--------~~h~~~v~~~~~s~~~~~l~s~s~d~~v~ 80 (377)
T 3dwl_C 10 LPKPSYEHAFN-SQRTEFVTTTATNQVELYEQDGNGWKHARTF--------SDHDKIVTCVDWAPKSNRIVTCSQDRNAY 80 (377)
T ss_dssp CSSCCSCCEEC-SSSSEEECCCSSSCBCEEEEETTEEEECCCB--------CCCSSCEEEEEECTTTCCEEEEETTSSEE
T ss_pred CCCcEEEEEEC-CCCCEEEEecCCCEEEEEEccCCceEEEEEE--------ecCCceEEEEEEeCCCCEEEEEeCCCeEE
Confidence 56789999998 789999999999999999998753 111111 23557899999999999999999999999
Q ss_pred EEECCCCc---EEEEEcccCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEECCCCCc-cceEEccC-CCCeE-EEEEecCC
Q 003822 576 LYDINSGR---RLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPI-QPCYTASS-SKGNV-MVCFSPDD 649 (793)
Q Consensus 576 IWDl~tg~---~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~Dg~IrIWDlrt~~~-~~~~~l~~-~~~~v-sv~fSpdg 649 (793)
+||+.+++ ....+. +|...|++++|+|++ .+|++|+.|+.|++||++++.. .....+.+ |...+ +++|+|++
T Consensus 81 vwd~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 158 (377)
T 3dwl_C 81 VYEKRPDGTWKQTLVLL-RLNRAATFVRWSPNE-DKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNN 158 (377)
T ss_dssp EC------CCCCEEECC-CCSSCEEEEECCTTS-SCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTS
T ss_pred EEEcCCCCceeeeeEec-ccCCceEEEEECCCC-CEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCC
Confidence 99999877 666676 699999999999998 8999999999999999998642 12334444 55444 69999999
Q ss_pred CEEEEEeCCCeEEEEEcCC------------------CcEEEEEeeecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEE
Q 003822 650 HYLLVSAVDNEVRQLLAVD------------------GRVHLNFGITATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRIC 711 (793)
Q Consensus 650 ~~Lasgs~Dg~I~IwDl~t------------------g~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IW 711 (793)
++|++++.|+.|++||+.+ ++++..+ .+...+..++|+|+++ +|++|+.||.| ++|
T Consensus 159 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~v~~~~~sp~~~-~l~~~~~d~~i-~iw 232 (377)
T 3dwl_C 159 VLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY----PSGGWVHAVGFSPSGN-ALAYAGHDSSV-TIA 232 (377)
T ss_dssp SEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC----CCSSSEEEEEECTTSS-CEEEEETTTEE-C-C
T ss_pred CEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc----cCCceEEEEEECCCCC-EEEEEeCCCcE-EEE
Confidence 9999999999999999853 3333332 5667899999999999 99999999999 999
Q ss_pred EcCCCcE----EEeeeecCCCCCccceeeeccCCccccCCccEEEEEEcCCCCceeeEeeEEEeCCCcEEEEcCC
Q 003822 712 CAQTGRR----LRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKSEIVKVNLLASTDHCDKECSHG 782 (793)
Q Consensus 712 Dv~tg~~----l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~~~~iv~~~ltaS~Dg~VkvW~~~ 782 (793)
|+.+++. +. .+.+ |...|.+++|+|++ ..++ +|+.|+. .+|...
T Consensus 233 d~~~~~~~~~~~~--~~~~-------------------~~~~v~~~~~s~~~-~~l~----~~~~~~~-~~~~~~ 280 (377)
T 3dwl_C 233 YPSAPEQPPRALI--TVKL-------------------SQLPLRSLLWANES-AIVA----AGYNYSP-ILLQGN 280 (377)
T ss_dssp EECSTTSCEEECC--CEEC-------------------SSSCEEEEEEEETT-EEEE----EESSSSE-EEECCC
T ss_pred ECCCCCCcceeeE--eecC-------------------CCCceEEEEEcCCC-CEEE----EEcCCcE-EEEEeC
Confidence 9999887 44 3333 44679999999974 3333 5555555 577665
No 109
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.95 E-value=3.6e-26 Score=255.57 Aligned_cols=269 Identities=13% Similarity=0.156 Sum_probs=194.6
Q ss_pred CCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcccccccCC-ce-eEecCC------------CCeEEEEEccC
Q 003822 496 GAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGA-GT-VTFDEF------------DQLTSVHVNSM 561 (793)
Q Consensus 496 ~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~~~~~~~~-~~-~~~~~~------------~~V~sv~~s~~ 561 (793)
.+.+.|.+++|+ +++++|++|+.||.|++||+.++........... .. ....|. ..|.+++|+|+
T Consensus 26 ~~~~~V~~v~~s-~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~ 104 (447)
T 3dw8_B 26 AEADIISTVEFN-HSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQ 104 (447)
T ss_dssp CGGGSEEEEEEC-SSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCC
T ss_pred cccCcEEEEEEC-CCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCC
Confidence 467899999998 7999999999999999999987652100000000 01 111333 77999999998
Q ss_pred C--CEEEEEECCCcEEEEECCCCcEE---------------------------------------EEEcccCCCCeEEEE
Q 003822 562 D--ELFLASGYSKNIALYDINSGRRL---------------------------------------QVFADMHKEHINVVK 600 (793)
Q Consensus 562 ~--~~lla~g~Dg~I~IWDl~tg~~l---------------------------------------~~~~~gh~~~V~sv~ 600 (793)
+ ..+++++.|++|++||+.+++.. ..+..+|...|++++
T Consensus 105 ~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 184 (447)
T 3dw8_B 105 KNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSIS 184 (447)
T ss_dssp CSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEE
T ss_pred CCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEE
Confidence 8 78999999999999999864432 233347999999999
Q ss_pred EcCCCCcEEEEEeCCCeEEEEECCCC-CccceE-----EccCCCCeE-EEEEecCC-CEEEEEeCCCeEEEEEcCCCcE-
Q 003822 601 FSNHSPSIFATSSFDQDVKLWDLRQK-PIQPCY-----TASSSKGNV-MVCFSPDD-HYLLVSAVDNEVRQLLAVDGRV- 671 (793)
Q Consensus 601 fspdg~~~LaTgs~Dg~IrIWDlrt~-~~~~~~-----~l~~~~~~v-sv~fSpdg-~~Lasgs~Dg~I~IwDl~tg~~- 671 (793)
|+|++ .+|++| .|+.|++||+++. ...... .+.+|...+ +++|+|+| ++|++|+.||.|++||+++++.
T Consensus 185 ~~~~~-~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~ 262 (447)
T 3dw8_B 185 INSDY-ETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALC 262 (447)
T ss_dssp ECTTS-SEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSS
T ss_pred EcCCC-CEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccc
Confidence 99998 899998 7999999999843 211111 244555544 69999998 9999999999999999999886
Q ss_pred ---EEEEeeecCCCC------------CcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCC-CcEEEeeeecCCCCCcccee
Q 003822 672 ---HLNFGITATGSS------------QNYTRSYYLNGRDYIVSGSCDEHVVRICCAQT-GRRLRDISLEGKGSGTSMFV 735 (793)
Q Consensus 672 ---~~~l~~~~~~~~------------~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~t-g~~l~~~~L~gh~~~~s~~v 735 (793)
...+.. +.. .+..++|+|+|. +|++++. +.| ++||+.+ ++.+. .+.+|........
T Consensus 263 ~~~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~~-~~v-~iwd~~~~~~~~~--~~~~~~~~~~~l~ 334 (447)
T 3dw8_B 263 DRHSKLFEE---PEDPSNRSFFSEIISSISDVKFSHSGR-YMMTRDY-LSV-KVWDLNMENRPVE--TYQVHEYLRSKLC 334 (447)
T ss_dssp CTTCEEECC---C-----CCHHHHHTTCEEEEEECTTSS-EEEEEES-SEE-EEEETTCCSSCSC--CEESCGGGTTTHH
T ss_pred cceeeEecc---CCCccccccccccCceEEEEEECCCCC-EEEEeeC-CeE-EEEeCCCCccccc--eeecccccccccc
Confidence 566642 222 789999999998 9999998 999 9999997 88888 7777752111000
Q ss_pred eeccCCccccCCccEEEEEEcCCCCceeeEeeEEEeCCCcEEEEcCCCC
Q 003822 736 QSLRGDPFRDFNMSILAAYTRPSSKSEIVKVNLLASTDHCDKECSHGQH 784 (793)
Q Consensus 736 ~sl~g~~~~~h~~~V~sva~~P~~~~~iv~~~ltaS~Dg~VkvW~~~~~ 784 (793)
..... .--..+..++|+|++ ..++ +|+.||.|++|+....
T Consensus 335 ~~~~~----~~i~~~~~~~~s~~~-~~l~----s~s~dg~v~iwd~~~~ 374 (447)
T 3dw8_B 335 SLYEN----DCIFDKFECCWNGSD-SVVM----TGSYNNFFRMFDRNTK 374 (447)
T ss_dssp HHHHT----SGGGCCCCEEECTTS-SEEE----EECSTTEEEEEETTTC
T ss_pred ccccc----cccccceEEEECCCC-CEEE----EeccCCEEEEEEcCCC
Confidence 00000 000124468999964 4455 8999999999998654
No 110
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.95 E-value=1.1e-25 Score=248.26 Aligned_cols=241 Identities=8% Similarity=0.078 Sum_probs=185.8
Q ss_pred eEEEEEeCCCCCEEEEEe-----------CCCeEEEEECCCCeE----EEEEe---ccCCCCCEEEEEEeeCCCCEEEEE
Q 003822 456 PRQFEYHPSISCLMVFGT-----------LDGEIVVVNHENENI----VSYIP---SFGAMNSVLGLCWLKKYPSKLIAG 517 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs-----------~DG~I~VWd~~t~~~----i~~l~---~~~h~~~V~sv~fs~~~g~~Lasg 517 (793)
|.++++++ +.+++|. .|+++++|++.+... ..... ...+...+.+++|+ |+|++++++
T Consensus 76 v~s~~~~~---~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fS-pDg~~la~a 151 (365)
T 4h5i_A 76 PTAIDASK---GIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYIS-REGTVAAIA 151 (365)
T ss_dssp CCEEEEET---TEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEEC-TTSSCEEEE
T ss_pred eEEEEeCC---CEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEc-CCCCEEEEE
Confidence 67777765 5677664 578899999865431 12221 12345568999998 799987655
Q ss_pred E--cCCcEEEEEcCCCCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEE-cccCCC
Q 003822 518 S--DNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVF-ADMHKE 594 (793)
Q Consensus 518 s--~DgtV~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~-~~gh~~ 594 (793)
+ .|++|++||+++++. ...+.+...|.+++|+|++..+++++ ++.+.+|+..+++.+... ..+|..
T Consensus 152 s~~~d~~i~iwd~~~~~~----------~~~~~~~~~V~~v~fspdg~~l~s~s-~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (365)
T 4h5i_A 152 SSKVPAIMRIIDPSDLTE----------KFEIETRGEVKDLHFSTDGKVVAYIT-GSSLEVISTVTGSCIARKTDFDKNW 220 (365)
T ss_dssp ESCSSCEEEEEETTTTEE----------EEEEECSSCCCEEEECTTSSEEEEEC-SSCEEEEETTTCCEEEEECCCCTTE
T ss_pred ECCCCCEEEEeECCCCcE----------EEEeCCCCceEEEEEccCCceEEecc-ceeEEEEEeccCcceeeeecCCCCC
Confidence 4 789999999998654 23445667899999998888777665 566778888877765443 336889
Q ss_pred CeEEEEEcCCCCcEEEEEeCCC----eEEEEECCCCCcc--ceEEccCCCCeE-EEEEecCCCEEEEEeCCCeEEEEEcC
Q 003822 595 HINVVKFSNHSPSIFATSSFDQ----DVKLWDLRQKPIQ--PCYTASSSKGNV-MVCFSPDDHYLLVSAVDNEVRQLLAV 667 (793)
Q Consensus 595 ~V~sv~fspdg~~~LaTgs~Dg----~IrIWDlrt~~~~--~~~~l~~~~~~v-sv~fSpdg~~Lasgs~Dg~I~IwDl~ 667 (793)
.|++++|+|++ .++++++.|+ .+++||+...... ....+.+|...+ +++|+|+|++||+|+.|+.|+|||+.
T Consensus 221 ~v~~v~fspdg-~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~ 299 (365)
T 4h5i_A 221 SLSKINFIADD-TVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLK 299 (365)
T ss_dssp EEEEEEEEETT-EEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETT
T ss_pred CEEEEEEcCCC-CEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECC
Confidence 99999999999 8999999887 6889998775332 233455565544 69999999999999999999999999
Q ss_pred CCcEEEEEeeecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCC
Q 003822 668 DGRVHLNFGITATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTG 716 (793)
Q Consensus 668 tg~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg 716 (793)
+++++.++. ..|...|..++|+|||+ +|+|||.|++| +|||+...
T Consensus 300 ~~~~~~~~~--~gH~~~V~~v~fSpdg~-~laS~S~D~tv-rvw~ip~~ 344 (365)
T 4h5i_A 300 DLSMSKIFK--QAHSFAITEVTISPDST-YVASVSAANTI-HIIKLPLN 344 (365)
T ss_dssp TTEEEEEET--TSSSSCEEEEEECTTSC-EEEEEETTSEE-EEEECCTT
T ss_pred CCcEEEEec--CcccCCEEEEEECCCCC-EEEEEeCCCeE-EEEEcCCC
Confidence 999887752 35677899999999999 99999999999 99999654
No 111
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.95 E-value=2.8e-26 Score=262.66 Aligned_cols=259 Identities=9% Similarity=0.019 Sum_probs=198.9
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcc
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSI 535 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~ 535 (793)
|.+++|+| ||+++|+++.|++|+ |...++.+ .+|...|.+++|+ |+| .++.+.+|+.+....
T Consensus 18 v~sv~~Sp-DG~~iASas~D~TV~--d~~~~~~l-----~gh~~~v~~V~Fs-Pdg-------~~~~~~~~~~~~~~~-- 79 (588)
T 2j04_A 18 KNNLTWAR-DGTLYLTTFPDISIG--QPKYAKDI-----NCNSKNLFHVKEF-PLE-------FENKLDFELAQQNGL-- 79 (588)
T ss_dssp SCCEEECT-TSCEEEECSSSEEEE--EECCCSCC-----SSBGGGTEEEEEE-CCC-------CCCTTTTSCCCSSCS--
T ss_pred EEEEEECC-CCCEEEEEcCCceee--ccccccee-----cCCCccEEEEEEC-CCC-------CcceEEEEeCCCceE--
Confidence 78899999 999999999999999 76655433 3899999999998 566 455555555432211
Q ss_pred cccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCC-----CeEEEEEcCCCCcEEE
Q 003822 536 RGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKE-----HINVVKFSNHSPSIFA 610 (793)
Q Consensus 536 ~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~-----~V~sv~fspdg~~~La 610 (793)
....+...|.+++|+|++..+++++.||.|++||... .+..+. |.. .|.+++|+|+| ++||
T Consensus 80 ---------~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~--~~~~~~~~sv~svafSPDG-~~LA 145 (588)
T 2j04_A 80 ---------LNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD--SKGNLSSRTYHCFEWNPIE-SSIV 145 (588)
T ss_dssp ---------STTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC--CSSCSTTTCEEEEEECSSS-SCEE
T ss_pred ---------eecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc--CCCccccccEEEEEEcCCC-CEEE
Confidence 1122347799999999999999999999999999554 555554 444 59999999999 8999
Q ss_pred EEeCCCeEEEEECCCCCc-----cceEEc----cCCCCeE-EEEEecCCCEEEEEeCCCeEEEEEcCCCcE---EEEEee
Q 003822 611 TSSFDQDVKLWDLRQKPI-----QPCYTA----SSSKGNV-MVCFSPDDHYLLVSAVDNEVRQLLAVDGRV---HLNFGI 677 (793)
Q Consensus 611 Tgs~Dg~IrIWDlrt~~~-----~~~~~l----~~~~~~v-sv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~---~~~l~~ 677 (793)
+|+.||+|++||+.++.. ..+.++ .+|...+ +++|+|+| +++++.|+.|++||+.++.. ..++.
T Consensus 146 sgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~- 222 (588)
T 2j04_A 146 VGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQ- 222 (588)
T ss_dssp EEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEE-
T ss_pred EEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeec-
Confidence 999999999999998743 123443 3444444 69999999 88888999999999988773 23442
Q ss_pred ecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCCCCccceeeeccCCccccCCccEEEEEE--
Q 003822 678 TATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYT-- 755 (793)
Q Consensus 678 ~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~-- 755 (793)
..+...|..++|+ |+ +|++++ +++| ++||+.+++... ...|| ...|.++++
T Consensus 223 -~~h~~~V~svaFs--g~-~LASa~-~~tI-kLWd~~~~~~~~--~~~gh-------------------~~~V~~va~~~ 275 (588)
T 2j04_A 223 -NASRRKITDLKIV--DY-KVVLTC-PGYV-HKIDLKNYSISS--LKTGS-------------------LENFHIIPLNH 275 (588)
T ss_dssp -CCCSSCCCCEEEE--TT-EEEEEC-SSEE-EEEETTTTEEEE--EECSC-------------------CSCCCEEEETT
T ss_pred -ccccCcEEEEEEE--CC-EEEEEe-CCeE-EEEECCCCeEEE--EEcCC-------------------CceEEEEEeee
Confidence 2355789999999 55 888887 6899 999999888744 22244 457888999
Q ss_pred cCCCCceeeEeeEEEeCCCcEEEEcCC
Q 003822 756 RPSSKSEIVKVNLLASTDHCDKECSHG 782 (793)
Q Consensus 756 ~P~~~~~iv~~~ltaS~Dg~VkvW~~~ 782 (793)
+|++ ..++ +|+.||+ |+|..+
T Consensus 276 s~d~-~~La----~a~edG~-klw~~d 296 (588)
T 2j04_A 276 EKES-TILL----MSNKTSY-KVLLED 296 (588)
T ss_dssp CSSC-EEEE----ECSSCEE-EEEESS
T ss_pred CCCC-CEEE----EEcCCCC-EEEeec
Confidence 8853 4455 7888999 999875
No 112
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.94 E-value=6.4e-26 Score=252.41 Aligned_cols=292 Identities=10% Similarity=0.045 Sum_probs=191.2
Q ss_pred eEEEEEe---CCCCCEEEEEeCCCeEEEEECCC-------CeEEEEEeccCCCCCEEEEEEe------------------
Q 003822 456 PRQFEYH---PSISCLMVFGTLDGEIVVVNHEN-------ENIVSYIPSFGAMNSVLGLCWL------------------ 507 (793)
Q Consensus 456 V~~vafs---P~d~~~Lasgs~DG~I~VWd~~t-------~~~i~~l~~~~h~~~V~sv~fs------------------ 507 (793)
++++.|. |....++++|. ++.|.+|+... +.....+....+...+..+.|.
T Consensus 18 p~~~~w~~~~~~~~~l~a~g~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (393)
T 4gq1_A 18 PYTTTWCSQSPSCSNLLAIGH-DTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSENLHDGDGNVNS 96 (393)
T ss_dssp EEEEEECTTSGGGTTEEEEEE-SSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEECC----------
T ss_pred CeEEEEeCCCCCCCCEEEEEC-CCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccccccCCCcceee
Confidence 7778884 43445565554 77899997531 1111111111333444444443
Q ss_pred -eCCCCEEEEEEcCCcEEEEEcCCCCCcccccccCCceeEecCCCCeEEEEEcc--------CCCEEEEEECCCcEEEEE
Q 003822 508 -KKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNS--------MDELFLASGYSKNIALYD 578 (793)
Q Consensus 508 -~~~g~~Lasgs~DgtV~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~--------~~~~lla~g~Dg~I~IWD 578 (793)
++++.++++|+.|++|++||.+++........ .....|.+.|.+++|+| ++..+++++.|++|+|||
T Consensus 97 ~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~----~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd 172 (393)
T 4gq1_A 97 SPVYSLFLACVCQDNTVRLIITKNETIITQHVL----GGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWR 172 (393)
T ss_dssp CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEE----CTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEE
T ss_pred cCCCCCEEEEEeCCCcEEEEECCCCccceeeee----cccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEE
Confidence 34556899999999999999988654211100 00124668899999987 566788888999999999
Q ss_pred CCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEECCCCCccceE-----------------------Ecc
Q 003822 579 INSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCY-----------------------TAS 635 (793)
Q Consensus 579 l~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~Dg~IrIWDlrt~~~~~~~-----------------------~l~ 635 (793)
++++.++..+. +|..+|.+++|+|+++.+|++|+.||+|++||+++++..... ...
T Consensus 173 ~~~~~~~~~~~-~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 251 (393)
T 4gq1_A 173 LTDEGPILAGY-PLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSS 251 (393)
T ss_dssp EETTEEEEEEE-ECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------
T ss_pred CCCCceeeeec-CCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecc
Confidence 99988888777 599999999999998678999999999999999886432111 011
Q ss_pred CCCC-eEEEEEe-cCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecC---------------CCCCcEEEEEee-CCCeE
Q 003822 636 SSKG-NVMVCFS-PDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITAT---------------GSSQNYTRSYYL-NGRDY 697 (793)
Q Consensus 636 ~~~~-~vsv~fS-pdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~---------------~~~~v~s~afsp-dg~~~ 697 (793)
++.. +.++.|+ |+|+.|++++.|+.+++||+.+++....+..+.. .........|+| .++.+
T Consensus 252 ~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (393)
T 4gq1_A 252 GIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYF 331 (393)
T ss_dssp CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEE
T ss_pred cccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEE
Confidence 2322 2357776 7999999999999999999988776554432110 011112233443 34547
Q ss_pred EEEEeCCCcEEEEEEcCCCcEEEeeeecCCCCCccceeeeccCCccccCCccEEEEEEcCCCCceeeEeeEEEeCCCcEE
Q 003822 698 IVSGSCDEHVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKSEIVKVNLLASTDHCDK 777 (793)
Q Consensus 698 L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~~~~iv~~~ltaS~Dg~Vk 777 (793)
+++|+.||.| ++||+.+++.+. .+.+|. .+|.+++|+|++ ..++ +|+.||. .
T Consensus 332 ~~sgs~Dg~V-~lwd~~~~~~~~--~~~~~~-------------------~~V~svafspdG-~~LA----~as~~Gv-~ 383 (393)
T 4gq1_A 332 ATAHSQHGLI-QLINTYEKDSNS--IPIQLG-------------------MPIVDFCWHQDG-SHLA----IATEGSV-L 383 (393)
T ss_dssp EEEETTTTEE-EEEETTCTTCCE--EEEECS-------------------SCEEEEEECTTS-SEEE----EEESSEE-E
T ss_pred EEEECCCCEE-EEEECCCCcEEE--EecCCC-------------------CcEEEEEEcCCC-CEEE----EEeCCCe-E
Confidence 7888999999 999999998877 444443 579999999964 4555 6776664 5
Q ss_pred EEcC
Q 003822 778 ECSH 781 (793)
Q Consensus 778 vW~~ 781 (793)
+|++
T Consensus 384 lvrL 387 (393)
T 4gq1_A 384 LTRL 387 (393)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5553
No 113
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.94 E-value=2.8e-25 Score=238.96 Aligned_cols=255 Identities=11% Similarity=0.012 Sum_probs=202.7
Q ss_pred CCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcccccccCCceeEecCCCCeEEEEEccCCC-EEEEEECCCcE
Q 003822 496 GAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDE-LFLASGYSKNI 574 (793)
Q Consensus 496 ~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~-~lla~g~Dg~I 574 (793)
+|.+.|.+++|+ +++++|++++.||.|++||+.++..... ......|...|.+++|+|++. .+++++.||.|
T Consensus 9 ~h~~~v~~~~~s-~~~~~l~~~~~d~~v~iw~~~~~~~~~~------~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 81 (342)
T 1yfq_A 9 APKDYISDIKII-PSKSLLLITSWDGSLTVYKFDIQAKNVD------LLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEI 81 (342)
T ss_dssp CCSSCEEEEEEE-GGGTEEEEEETTSEEEEEEEETTTTEEE------EEEEEECSSCEEEEEEEESSSEEEEEEETTSCE
T ss_pred CCCCcEEEEEEc-CCCCEEEEEcCCCeEEEEEeCCCCcccc------ceeeeecCCceEEEEECCCCCcEEEEEcCCCeE
Confidence 799999999998 6899999999999999999988652111 122346678899999999999 89999999999
Q ss_pred EEEEC-CCCcEEEEEccc--CCCCeEEEEEcCCCCcEEEEEeCCCeEEEEECCC---------CCccceEEccCCCCeEE
Q 003822 575 ALYDI-NSGRRLQVFADM--HKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQ---------KPIQPCYTASSSKGNVM 642 (793)
Q Consensus 575 ~IWDl-~tg~~l~~~~~g--h~~~V~sv~fspdg~~~LaTgs~Dg~IrIWDlrt---------~~~~~~~~l~~~~~~vs 642 (793)
++||+ .+++. ..+. + |...|++++|+| + .++++++.|+.|++||+++ ++. +..+.....+.+
T Consensus 82 ~~wd~~~~~~~-~~~~-~~~~~~~v~~l~~~~-~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~v~~ 155 (342)
T 1yfq_A 82 LKVDLIGSPSF-QALT-NNEANLGICRICKYG-D-DKLIAASWDGLIEVIDPRNYGDGVIAVKNLN--SNNTKVKNKIFT 155 (342)
T ss_dssp EEECSSSSSSE-EECB-SCCCCSCEEEEEEET-T-TEEEEEETTSEEEEECHHHHTTBCEEEEESC--SSSSSSCCCEEE
T ss_pred EEEEeccCCce-Eecc-ccCCCCceEEEEeCC-C-CEEEEEcCCCeEEEEcccccccccccccCCe--eeEEeeCCceEE
Confidence 99999 87765 5555 7 999999999999 6 8999999999999999986 532 233344445667
Q ss_pred EEEecCCCEEEEEeCCCeEEEEEcCC-CcEEEEEeeecCCCCCcEEEEEee-CCCeEEEEEeCCCcEEEEEEcCCC----
Q 003822 643 VCFSPDDHYLLVSAVDNEVRQLLAVD-GRVHLNFGITATGSSQNYTRSYYL-NGRDYIVSGSCDEHVVRICCAQTG---- 716 (793)
Q Consensus 643 v~fSpdg~~Lasgs~Dg~I~IwDl~t-g~~~~~l~~~~~~~~~v~s~afsp-dg~~~L~Sgs~Dg~II~IWDv~tg---- 716 (793)
++|+|++ +++++.|+.|++||+.+ +....... ...+...+..++|+| ++. ++++|+.||.+ ++|++..+
T Consensus 156 ~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~~~~i~~i~~~~~~~~-~l~~~~~dg~i-~i~~~~~~~~~~ 230 (342)
T 1yfq_A 156 MDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIE-ESGLKYQIRDVALLPKEQE-GYACSSIDGRV-AVEFFDDQGDDY 230 (342)
T ss_dssp EEECSSE--EEEEESTTEEEEEESSCCTTCCCEEE-ECSCSSCEEEEEECSGGGC-EEEEEETTSEE-EEEECCTTCCST
T ss_pred EEecCCc--EEEEeCCCeEEEEECCccccccceee-ecCCCCceeEEEECCCCCC-EEEEEecCCcE-EEEEEcCCCccc
Confidence 9999988 99999999999999998 65322111 224566789999999 988 99999999999 99999887
Q ss_pred --cEEEeeeecCCCCCccceeeeccCCccccCCccEEEEEEcCCCCceeeEeeEEEeCCCcEEEEcCCCCC
Q 003822 717 --RRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKSEIVKVNLLASTDHCDKECSHGQHS 785 (793)
Q Consensus 717 --~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~~~~iv~~~ltaS~Dg~VkvW~~~~~~ 785 (793)
+.+. .+.+|.... .-.+|...|.+++|+|+ ...++ +|+.||.|++|+.....
T Consensus 231 ~~~~~~--~~~~~~~~~----------~~~~~~~~i~~~~~s~~-~~~l~----~~~~dg~i~vwd~~~~~ 284 (342)
T 1yfq_A 231 NSSKRF--AFRCHRLNL----------KDTNLAYPVNSIEFSPR-HKFLY----TAGSDGIISCWNLQTRK 284 (342)
T ss_dssp TCTTCE--EEECCCCCT----------TCCSSCCCEEEEEECTT-TCCEE----EEETTSCEEEEETTTTE
T ss_pred ccccce--eeecccccc----------cccccceeEEEEEEcCC-CCEEE----EecCCceEEEEcCccHh
Confidence 6666 677765210 11245668999999995 44555 89999999999987543
No 114
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.3e-25 Score=271.22 Aligned_cols=256 Identities=13% Similarity=0.147 Sum_probs=202.0
Q ss_pred cCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcccccccCCceeEecCCCCeEEEEEccC--CCEEEEEECCC
Q 003822 495 FGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSM--DELFLASGYSK 572 (793)
Q Consensus 495 ~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~--~~~lla~g~Dg 572 (793)
.+|.+.|++++|+ +++++|++|+.||+|++||+.++..... .....|..+|.+++|+++ +..+++++.||
T Consensus 6 ~gH~~~V~~l~~s-~dg~~latg~~dg~I~vwd~~~~~~~~~-------~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg 77 (753)
T 3jro_A 6 NAHNELIHDAVLD-YYGKRLATCSSDKTIKIFEVEGETHKLI-------DTLTGHEGPVWRVDWAHPKFGTILASCSYDG 77 (753)
T ss_dssp --CCCCEEEECCC-SSSCCEEEEETTTEEEEEEEETTEEEEE-------EEECCCSSCEEEEEECCTTSCSEEEEEETTS
T ss_pred ccCcceeEEEEEC-CCCCeEEEEECCCcEEEEecCCCCCccc-------eeccCCcCceEEEEecCCCCCCEEEEEeCCC
Confidence 3899999999998 7899999999999999999985322110 112246688999999887 88999999999
Q ss_pred cEEEEECCCCc--EEEEEcccCCCCeEEEEEcCC--CCcEEEEEeCCCeEEEEECCCCCccceEEccCCCCeE-EEEEec
Q 003822 573 NIALYDINSGR--RLQVFADMHKEHINVVKFSNH--SPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSP 647 (793)
Q Consensus 573 ~I~IWDl~tg~--~l~~~~~gh~~~V~sv~fspd--g~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~~~~v-sv~fSp 647 (793)
.|++||+.+++ .+..+. +|...|++++|+|+ + .++++|+.||.|++||++++.........+|...+ +++|+|
T Consensus 78 ~I~vwd~~~~~~~~~~~~~-~h~~~V~~v~~sp~~~~-~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p 155 (753)
T 3jro_A 78 KVLIWKEENGRWSQIAVHA-VHSASVNSVQWAPHEYG-PLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAP 155 (753)
T ss_dssp CEEEEEEETTEEEEEEEEC-CCSSCEEEEEECCGGGC-SEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECC
T ss_pred eEEEEECCCCccccccccc-CCCCCeEEEEECCCCCC-CEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecC
Confidence 99999999987 667776 69999999999999 7 89999999999999999987555555555665555 599999
Q ss_pred -------------CCCEEEEEeCCCeEEEEEcCCCcEEEEE-eeecCCCCCcEEEEEeeC---CCeEEEEEeCCCcEEEE
Q 003822 648 -------------DDHYLLVSAVDNEVRQLLAVDGRVHLNF-GITATGSSQNYTRSYYLN---GRDYIVSGSCDEHVVRI 710 (793)
Q Consensus 648 -------------dg~~Lasgs~Dg~I~IwDl~tg~~~~~l-~~~~~~~~~v~s~afspd---g~~~L~Sgs~Dg~II~I 710 (793)
++.++++|+.||.|++||+.++...... .....+...+..++|+|+ +. ++++|+.||.| ++
T Consensus 156 ~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~-~l~s~s~Dg~I-~i 233 (753)
T 3jro_A 156 ATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRS-YLASVSQDRTC-II 233 (753)
T ss_dssp CC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSE-EEEEEESSSCE-EE
T ss_pred cccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCC-EEEEEecCCEE-EE
Confidence 5999999999999999999887432111 112356678999999999 55 99999999999 99
Q ss_pred EEcCCCcEEEeeeecCCCCCccceeeeccCCccccCCccEEEEEEcCCCCceeeEeeEEEeCCCcEEEEcCCC
Q 003822 711 CCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKSEIVKVNLLASTDHCDKECSHGQ 783 (793)
Q Consensus 711 WDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~~~~iv~~~ltaS~Dg~VkvW~~~~ 783 (793)
||+.+++......+ ....+|...|.+++|+|+ ...++ +|+.||.|++|+...
T Consensus 234 wd~~~~~~~~~~~~----------------~~~~~~~~~v~~l~~spd-g~~l~----s~s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 234 WTQDNEQGPWKKTL----------------LKEEKFPDVLWRASWSLS-GNVLA----LSGGDNKVTLWKENL 285 (753)
T ss_dssp EEESSSSSCCBCCB----------------SSSSCCSSCCCCEEECTT-TCCEE----EECSSSCEECCBCCS
T ss_pred ecCCCCCCcceeEE----------------eccCCCCCceEEEEEcCC-CCEEE----EEcCCCEEEEEecCC
Confidence 99988753220001 122346678999999996 44555 889999999999874
No 115
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.94 E-value=7.7e-26 Score=261.93 Aligned_cols=237 Identities=10% Similarity=0.045 Sum_probs=176.8
Q ss_pred CCCCEEEEEEcCCcEEEEEcCCCCCcccccccCCceeEe-cCCCCeEEEEEccC------CCEEEEEECCCcEEEEECCC
Q 003822 509 KYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTF-DEFDQLTSVHVNSM------DELFLASGYSKNIALYDINS 581 (793)
Q Consensus 509 ~~g~~Lasgs~DgtV~vWDl~~~~~~~~~~~~~~~~~~~-~~~~~V~sv~~s~~------~~~lla~g~Dg~I~IWDl~t 581 (793)
++++.+++++.|++|++||+.+++.... ....+ .+.+.|.+++|+|. ++.+++++.||+|++||+.+
T Consensus 171 ~~~~~laS~s~D~tI~iWd~~~~~~~~~------~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~ 244 (524)
T 2j04_B 171 EHLEMFDKEKHSSCIQIFKMNTSTLHCV------KVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIID 244 (524)
T ss_dssp -----------CEEEEEEEEETTTCCEE------EEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCC
T ss_pred hhhhhhccCCCCceEEEEEccCCCCCce------EEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCC
Confidence 3445566778899999999987653211 01112 34578999999986 46888888999999999987
Q ss_pred CcE-----------EEEEcccCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEECCCCCccceEEccCCCCeE-EE--EEec
Q 003822 582 GRR-----------LQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MV--CFSP 647 (793)
Q Consensus 582 g~~-----------l~~~~~gh~~~V~sv~fspdg~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~~~~v-sv--~fSp 647 (793)
+.. ...+. +|...|++++|+|++ .|++|+.||+|++||++++. .+...+.+|...+ ++ .|+|
T Consensus 245 ~~~~~~~~~~~~~p~~~l~-~h~~~v~sv~~s~~~--~lasgs~DgtV~lWD~~~~~-~~~~~~~~H~~~V~sv~~~~s~ 320 (524)
T 2j04_B 245 NATDVHVFKMCEKPSLTLS-LADSLITTFDFLSPT--TVVCGFKNGFVAEFDLTDPE-VPSFYDQVHDSYILSVSTAYSD 320 (524)
T ss_dssp CSSSSSEEECCCSCSEEEC-CTTTCEEEEEESSSS--EEEEEETTSEEEEEETTBCS-SCSEEEECSSSCEEEEEEECCT
T ss_pred CccccccceeecCceEEEE-cCCCCEEEEEecCCC--eEEEEeCCCEEEEEECCCCC-CceEEeecccccEEEEEEEcCC
Confidence 642 24666 699999999999854 79999999999999998753 2344455666655 46 5788
Q ss_pred CC-CEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEEeeeecC
Q 003822 648 DD-HYLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRLRDISLEG 726 (793)
Q Consensus 648 dg-~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~g 726 (793)
+| .+|++|+.|++|++||+++++....+..+.. ...+..++|+|++. .+++++.|++| ++||++++..+. ++.+
T Consensus 321 ~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~-~~~v~~v~fsp~~~-~l~s~~~d~tv-~lwd~~~~~~~~--~l~g 395 (524)
T 2j04_B 321 FEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFR-GSNLVPVVYCPQIY-SYIYSDGASSL-RAVPSRAAFAVH--PLVS 395 (524)
T ss_dssp TSCCEEEEEETTSEEEEECGGGHHHHCEEEEECS-CCSCCCEEEETTTT-EEEEECSSSEE-EEEETTCTTCCE--EEEE
T ss_pred CCCeEEEEeccCCeEEEEECCCCCcccccccccc-cCcccceEeCCCcC-eEEEeCCCCcE-EEEECcccccce--eeec
Confidence 88 8999999999999999999887665543221 12467899999998 89999999999 999999998877 5655
Q ss_pred CCCCccceeeeccCCccccCCccEEEEEEcCCCCceeeEeeEEEeCCCcEEEEcCCCC
Q 003822 727 KGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKSEIVKVNLLASTDHCDKECSHGQH 784 (793)
Q Consensus 727 h~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~~~~iv~~~ltaS~Dg~VkvW~~~~~ 784 (793)
|. ..|.+++|+|++ ..++ +||.||+|++|+...+
T Consensus 396 H~-------------------~~V~sva~Sp~g-~~l~----Sgs~Dgtv~lwd~~~~ 429 (524)
T 2j04_B 396 RE-------------------TTITAIGVSRLH-PMVL----AGSADGSLIITNAARR 429 (524)
T ss_dssp CS-------------------SCEEEEECCSSC-CBCE----EEETTTEEECCBSCSS
T ss_pred CC-------------------CceEEEEeCCCC-CeEE----EEECCCEEEEEechHh
Confidence 54 579999999964 4556 8999999999997554
No 116
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.94 E-value=6.5e-25 Score=240.87 Aligned_cols=292 Identities=10% Similarity=0.076 Sum_probs=206.2
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEE-EEEEcCCcEEEEEcCCCCCc
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKL-IAGSDNGSLKLYDIRHMPPS 534 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~L-asgs~DgtV~vWDl~~~~~~ 534 (793)
|++++|+| ++++|++|+.+| ++||++++++....... ..+..+++. ++++.+ ++|+.|++|++||..+++.
T Consensus 22 V~~v~fs~-dg~~la~g~~~~-~~iw~~~~~~~~~~~~~----~~~~~~~~~-~~~~~~~~~~~~d~~v~iWd~~~~~~- 93 (355)
T 3vu4_A 22 VTDYEFNQ-DQSCLILSTLKS-FEIYNVHPVAHIMSQEM----RHLSKVRML-HRTNYVAFVTGVKEVVHIWDDVKKQD- 93 (355)
T ss_dssp CCEEEECT-TSSEEEEECSSE-EEEEEETTEEEEEEEEC----SCCCEEEEC-TTSSEEEEECSSTTEEEEEETTTTEE-
T ss_pred eEEEEECC-CCCEEEEEcCCE-EEEEecCCcceeeeeec----CCeEEEEEc-CCCCEEEEEECCccEEEEEECCCCcE-
Confidence 89999999 999999998775 78999988776655432 246777776 556666 6678889999999988654
Q ss_pred ccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCC-cEEEEEcccCCCCeEEEEEcCCCCcEEEE--
Q 003822 535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSG-RRLQVFADMHKEHINVVKFSNHSPSIFAT-- 611 (793)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg-~~l~~~~~gh~~~V~sv~fspdg~~~LaT-- 611 (793)
...+.+...|.+++++++ .+++ +.++.|++||+.++ +.+..+. . +...+++++ . +++.
T Consensus 94 ---------~~~~~~~~~v~~v~~~~~--~~~~-~~~~~i~i~d~~~~~~~~~~~~-~---~~~~~~~s~-~--~la~~s 154 (355)
T 3vu4_A 94 ---------VSRIKVDAPVKDLFLSRE--FIVV-SYGDVISVFKFGNPWKRITDDI-R---FGGVCEFSN-G--LLVYSN 154 (355)
T ss_dssp ---------EEEEECSSCEEEEEECSS--EEEE-EETTEEEEEESSTTCCBSSCCE-E---EEEEEEEET-T--EEEEEE
T ss_pred ---------EEEEECCCceEEEEEcCC--EEEE-EEcCEEEEEECCCCceeeEEec-c---CCceEEEEc-c--EEEEeC
Confidence 223445678999999643 3333 45889999999988 7666665 2 445566776 3 4554
Q ss_pred EeCCCeEEEEECCCCCc-------------cc-eEEccCCCCeE-EEEEecCCCEEEEEeCCCe-EEEEEcCCCcEEEEE
Q 003822 612 SSFDQDVKLWDLRQKPI-------------QP-CYTASSSKGNV-MVCFSPDDHYLLVSAVDNE-VRQLLAVDGRVHLNF 675 (793)
Q Consensus 612 gs~Dg~IrIWDlrt~~~-------------~~-~~~l~~~~~~v-sv~fSpdg~~Lasgs~Dg~-I~IwDl~tg~~~~~l 675 (793)
|+.||.|++||++++.. .+ +..+.+|...+ +++|+|+|++|++|+.|++ |++||+.+++.+..+
T Consensus 155 g~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~ 234 (355)
T 3vu4_A 155 EFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREF 234 (355)
T ss_dssp SSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEE
T ss_pred CCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEE
Confidence 68899999999987530 12 55667777766 5999999999999999998 999999999998887
Q ss_pred eeecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCCC---Cccce-eeeccCCccccCCccEE
Q 003822 676 GITATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKGS---GTSMF-VQSLRGDPFRDFNMSIL 751 (793)
Q Consensus 676 ~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~~---~~s~~-v~sl~g~~~~~h~~~V~ 751 (793)
.. ..+...+..++|+|+|. +|++|+.|++| ++||+..+.......+.+.-. -...+ ....... .+......
T Consensus 235 ~~-g~h~~~v~~~~~s~~~~-~l~s~s~d~~v-~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 309 (355)
T 3vu4_A 235 RR-GLDRADVVDMKWSTDGS-KLAVVSDKWTL-HVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLS--VDKHVRGC 309 (355)
T ss_dssp EC-TTCCSCEEEEEECTTSC-EEEEEETTCEE-EEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECC--CCTTCCCC
T ss_pred Ec-CCCCCcEEEEEECCCCC-EEEEEECCCEE-EEEEccCCCCcccccccceeeccccccccceeEEEec--cCCCCCce
Confidence 51 11567899999999999 99999999999 999998775433213222100 00000 0000000 01122345
Q ss_pred EEEEcCCCCceeeEeeEEEeCCCcEEEEcCCCC
Q 003822 752 AAYTRPSSKSEIVKVNLLASTDHCDKECSHGQH 784 (793)
Q Consensus 752 sva~~P~~~~~iv~~~ltaS~Dg~VkvW~~~~~ 784 (793)
.++|+|+ ...++ +++.||.+++|.....
T Consensus 310 ~~a~~~d-~~~l~----~~~~dg~~~~~~~~~~ 337 (355)
T 3vu4_A 310 KIAWISE-SSLVV----VWPHTRMIETFKVVFD 337 (355)
T ss_dssp EEEESSS-SEEEE----EETTTTEEEEEEEEEE
T ss_pred EEEEeCC-CCEEE----EEeCCCeEEEEEEEcC
Confidence 6899996 44455 7889999999986543
No 117
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.94 E-value=8.8e-25 Score=245.72 Aligned_cols=234 Identities=15% Similarity=0.226 Sum_probs=190.8
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcc
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSI 535 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~ 535 (793)
|++++| ++++|++|+.||+|++||+.+++.+..+. +|...|.+++|+ ++.+++|+.||+|++||+.++....
T Consensus 176 v~~l~~---~~~~l~sg~~dg~i~vwd~~~~~~~~~~~--~h~~~v~~l~~~---~~~l~s~s~dg~i~vwd~~~~~~~~ 247 (435)
T 1p22_A 176 VLCLQY---DERVIITGSSDSTVRVWDVNTGEMLNTLI--HHCEAVLHLRFN---NGMMVTCSKDRSIAVWDMASPTDIT 247 (435)
T ss_dssp EEEEEC---CSSEEEEEETTSCEEEEESSSCCEEEEEC--CCCSCEEEEECC---TTEEEEEETTSCEEEEECSSSSCCE
T ss_pred EEEEEE---CCCEEEEEcCCCeEEEEECCCCcEEEEEc--CCCCcEEEEEEc---CCEEEEeeCCCcEEEEeCCCCCCce
Confidence 889988 45899999999999999999999988876 899999999984 5699999999999999998865421
Q ss_pred cccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeCC
Q 003822 536 RGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFD 615 (793)
Q Consensus 536 ~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~D 615 (793)
. ......|...|.++++ ++..+++++.||.|++||+++++.+..+. +|...|.++.|+ + .++++|+.|
T Consensus 248 ~------~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~--~-~~l~~g~~d 315 (435)
T 1p22_A 248 L------RRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLN-GHKRGIACLQYR--D-RLVVSGSSD 315 (435)
T ss_dssp E------EEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEE-CCSSCEEEEEEE--T-TEEEEEETT
T ss_pred e------eeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEc-CCCCcEEEEEeC--C-CEEEEEeCC
Confidence 0 0122345678999998 77899999999999999999999999998 699999999994 4 699999999
Q ss_pred CeEEEEECCCCCccceEEccCCCCeE-EEEEecCCCEEEEEeCCCeEEEEEcCCCc---------EEEEEeeecCCCCCc
Q 003822 616 QDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLVSAVDNEVRQLLAVDGR---------VHLNFGITATGSSQN 685 (793)
Q Consensus 616 g~IrIWDlrt~~~~~~~~l~~~~~~v-sv~fSpdg~~Lasgs~Dg~I~IwDl~tg~---------~~~~l~~~~~~~~~v 685 (793)
|.|++||++++. .+..+.+|...+ +++| ++.+|++|+.||.|++||+.++. .+..+. .+...+
T Consensus 316 g~i~iwd~~~~~--~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~---~h~~~v 388 (435)
T 1p22_A 316 NTIRLWDIECGA--CLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLV---EHSGRV 388 (435)
T ss_dssp SCEEEEETTTCC--EEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEEC---CCSSCC
T ss_pred CeEEEEECCCCC--EEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeecc---CCCCCe
Confidence 999999999874 455666676665 4777 79999999999999999997765 666664 456678
Q ss_pred EEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEE
Q 003822 686 YTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRLR 720 (793)
Q Consensus 686 ~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~ 720 (793)
..++| ++. +|++|+.||.| ++||+.++....
T Consensus 389 ~~l~~--~~~-~l~s~s~Dg~i-~iwd~~~~~~~~ 419 (435)
T 1p22_A 389 FRLQF--DEF-QIVSSSHDDTI-LIWDFLNDPAAQ 419 (435)
T ss_dssp CCEEE--CSS-CEEECCSSSEE-EEEC--------
T ss_pred EEEEe--CCC-EEEEEeCCCEE-EEEECCCCCCcc
Confidence 88888 666 89999999999 999998876654
No 118
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.93 E-value=4.6e-24 Score=230.50 Aligned_cols=272 Identities=12% Similarity=0.113 Sum_probs=204.0
Q ss_pred EECCCCeEEEEEeccCCCCCEEEEEEeeCC--CCEEEEEEcCCcEEEEEcCCCCCcccccccCCceeEecCCCCeEEEEE
Q 003822 481 VNHENENIVSYIPSFGAMNSVLGLCWLKKY--PSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHV 558 (793)
Q Consensus 481 Wd~~t~~~i~~l~~~~h~~~V~sv~fs~~~--g~~Lasgs~DgtV~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~ 558 (793)
|+....+.+..+. +|.+.|++++|+|.. |++|++|+.||.|++||+.+...... .....|...|.+++|
T Consensus 24 ~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~-------~~~~~h~~~v~~~~~ 94 (368)
T 3mmy_A 24 DNHNPMKDIEVTS--SPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIP-------KAQQMHTGPVLDVCW 94 (368)
T ss_dssp CSSCTTCCEECSS--CCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEE-------EEEEECSSCEEEEEE
T ss_pred CCCCCcceeEecc--CCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeE-------EEeccccCCEEEEEE
Confidence 3444555555554 899999999998433 69999999999999999987332110 122346688999999
Q ss_pred ccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEE--cCCCCcEEEEEeCCCeEEEEECCCCCccceEEccC
Q 003822 559 NSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKF--SNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASS 636 (793)
Q Consensus 559 s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~f--spdg~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~ 636 (793)
+|++..+++++.||.|++||+.+++.+... +|...|++++| +|++ .+|++++.||.|++||+++++.. ..+..
T Consensus 95 ~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~--~~~~~v~~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~--~~~~~ 169 (368)
T 3mmy_A 95 SDDGSKVFTASCDKTAKMWDLSSNQAIQIA--QHDAPVKTIHWIKAPNY-SCVMTGSWDKTLKFWDTRSSNPM--MVLQL 169 (368)
T ss_dssp CTTSSEEEEEETTSEEEEEETTTTEEEEEE--ECSSCEEEEEEEECSSC-EEEEEEETTSEEEEECSSCSSCS--EEEEC
T ss_pred CcCCCEEEEEcCCCcEEEEEcCCCCceeec--cccCceEEEEEEeCCCC-CEEEEccCCCcEEEEECCCCcEE--EEEec
Confidence 999999999999999999999999887754 49999999999 8888 89999999999999999988544 44445
Q ss_pred CCCeEEEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCCC---eEEEEEeCCCcEEEEEEc
Q 003822 637 SKGNVMVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNGR---DYIVSGSCDEHVVRICCA 713 (793)
Q Consensus 637 ~~~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg~---~~L~Sgs~Dg~II~IWDv 713 (793)
+....++.+. +..+++++.++.+++|++.......... ..........+.+.++.. ..+++|+.||.+ ++||+
T Consensus 170 ~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i-~i~~~ 245 (368)
T 3mmy_A 170 PERCYCADVI--YPMAVVATAERGLIVYQLENQPSEFRRI-ESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRV-AIHYI 245 (368)
T ss_dssp SSCEEEEEEE--TTEEEEEEGGGCEEEEECSSSCEEEEEC-CCSCSSCEEEEEEEECTTSCEEEEEEEETTSEE-EEEES
T ss_pred CCCceEEEec--CCeeEEEeCCCcEEEEEeccccchhhhc-cccccCCCceEEEcccCCCCCCeEEEecCCCcE-EEEec
Confidence 5555555555 4588999999999999998876543332 222334555666666554 139999999999 99999
Q ss_pred CCC---cEEEeeeecCCCCCccceeeeccCCccccCCccEEEEEEcCCCCceeeEeeEEEeCCCcEEEEcCCCC
Q 003822 714 QTG---RRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKSEIVKVNLLASTDHCDKECSHGQH 784 (793)
Q Consensus 714 ~tg---~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~~~~iv~~~ltaS~Dg~VkvW~~~~~ 784 (793)
.++ +.+. .+.+|...... ....+|...|.+++|+|++ ..++ +|+.||.|++|+....
T Consensus 246 ~~~~~~~~~~--~~~~~~~~~~~-------~~~~~~~~~v~~~~~sp~~-~~l~----s~~~dg~i~iwd~~~~ 305 (368)
T 3mmy_A 246 NPPNPAKDNF--TFKCHRSNGTN-------TSAPQDIYAVNGIAFHPVH-GTLA----TVGSDGRFSFWDKDAR 305 (368)
T ss_dssp SCSCHHHHSE--EEECSEEC-----------CCCEEECCEEEEEECTTT-CCEE----EEETTSCEEEEETTTT
T ss_pred CCCCccccce--eeeeeeccccc-------ccccccccceEEEEEecCC-CEEE----EEccCCeEEEEECCCC
Confidence 988 4555 66776521111 1223455689999999964 4555 8999999999998754
No 119
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.93 E-value=7.9e-24 Score=239.18 Aligned_cols=244 Identities=10% Similarity=0.085 Sum_probs=194.6
Q ss_pred eEEEEEeCCCCCEE-EEEeCCCeEEEEECC--CCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCC
Q 003822 456 PRQFEYHPSISCLM-VFGTLDGEIVVVNHE--NENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMP 532 (793)
Q Consensus 456 V~~vafsP~d~~~L-asgs~DG~I~VWd~~--t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~ 532 (793)
|++++|+| ++++| ++|+.||.|+|||+. +++.+..+....|...|.+++|+ +++++|++|+.||.|++|++.++.
T Consensus 105 v~~~~~s~-d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s-p~~~~l~~~~~~g~v~~~~~~~~~ 182 (450)
T 2vdu_B 105 IRNLRLTS-DESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIA-EDDTTVIIADKFGDVYSIDINSIP 182 (450)
T ss_dssp EEEEEECT-TSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEEC-TTSSEEEEEETTSEEEEEETTSCC
T ss_pred eEEEEEcC-CCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEc-CCCCEEEEEeCCCcEEEEecCCcc
Confidence 99999999 88885 899999999999999 88888777655678899999998 789999999999999999998765
Q ss_pred CcccccccCCceeEecCCCCeEEEEEccC---CCEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEE
Q 003822 533 PSIRGMHYGAGTVTFDEFDQLTSVHVNSM---DELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIF 609 (793)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~~V~sv~~s~~---~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~L 609 (793)
...... .....|...|.+++|+|+ +..+++++.|+.|++||+++++.+..+..+|...|++++|+ ++ .+|
T Consensus 183 ~~~~~~-----~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~-~~l 255 (450)
T 2vdu_B 183 EEKFTQ-----EPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KD-YLL 255 (450)
T ss_dssp CSSCCC-----CCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-ST-TEE
T ss_pred cccccc-----eeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CC-CEE
Confidence 421000 012345678999999998 77899999999999999999998888554799999999999 87 899
Q ss_pred EEEeCCCeEEEEECCCCCccceEEcc------------------------CCCCeEEEEEecCCCEEEEEe-CCCeEEEE
Q 003822 610 ATSSFDQDVKLWDLRQKPIQPCYTAS------------------------SSKGNVMVCFSPDDHYLLVSA-VDNEVRQL 664 (793)
Q Consensus 610 aTgs~Dg~IrIWDlrt~~~~~~~~l~------------------------~~~~~vsv~fSpdg~~Lasgs-~Dg~I~Iw 664 (793)
++|+.|++|++||+++++....+... ....+..++|+|++++|++++ .|+.|++|
T Consensus 256 ~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw 335 (450)
T 2vdu_B 256 LSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIIL 335 (450)
T ss_dssp EEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEE
T ss_pred EEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEE
Confidence 99999999999999998654444321 112344699999999999999 89999999
Q ss_pred Ec--CCC---cEEEEEeeecCCCCCcEEEEEeeCCCeEEEEEeC-------CCcEEEEEEcCC
Q 003822 665 LA--VDG---RVHLNFGITATGSSQNYTRSYYLNGRDYIVSGSC-------DEHVVRICCAQT 715 (793)
Q Consensus 665 Dl--~tg---~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~-------Dg~II~IWDv~t 715 (793)
++ .++ +.+..+. .+..+..++|+|++ ++++.+. +..+ .+|.+..
T Consensus 336 ~~~~~~~~~l~~~~~~~----~~~~v~~~~~~~~~--~~v~~~~~~~~~~~~~~i-~v~~~~~ 391 (450)
T 2vdu_B 336 EMSEKQKGDLALKQIIT----FPYNVISLSAHNDE--FQVTLDNKESSGVQKNFA-KFIEYNL 391 (450)
T ss_dssp EECSSSTTCEEEEEEEE----CSSCEEEEEEETTE--EEEEECCTTCCSSCCCSE-EEEEEET
T ss_pred EeccCCCCceeeccEec----cCCceEEEEecCCc--EEEEEecccCCCCCCcce-EEEEEEc
Confidence 99 555 4445554 23678999999954 4555433 4456 8887653
No 120
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.93 E-value=2.4e-23 Score=225.16 Aligned_cols=281 Identities=6% Similarity=-0.021 Sum_probs=184.8
Q ss_pred eEEEEEeCCCCC--EEEEEeCCCeEEEEECCCC---eEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEE-EEEcC
Q 003822 456 PRQFEYHPSISC--LMVFGTLDGEIVVVNHENE---NIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLK-LYDIR 529 (793)
Q Consensus 456 V~~vafsP~d~~--~Lasgs~DG~I~VWd~~t~---~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~-vWDl~ 529 (793)
+.++-|-..+.+ .+++++ ...|++|+..++ +.+.++. .|..+|..+.+.|...+++.++-..-.+. ++-+-
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~-~~~v~lw~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla 118 (356)
T 2w18_A 42 VSAMFWERAGCKEPCIITAC-EDVVSLWKALDAWQWEKLYTWH--FAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALF 118 (356)
T ss_dssp EEEEEEC----CEEEEEEEE-SSEEEEEEESSSSBEEEEEEEE--CCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEEC
T ss_pred EeeeeeccCCCCccEEEEec-cceEEEcccCCCccceeeEEEe--ccCceeEEEEEcCcccceeeeeeccccccceEEEE
Confidence 667777652322 556666 568999999988 6777776 78888888888743334443332221111 11111
Q ss_pred --CCCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEE---CCCcEEEEECC-CCcEEEEEcccCCCCeEEEEEcC
Q 003822 530 --HMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASG---YSKNIALYDIN-SGRRLQVFADMHKEHINVVKFSN 603 (793)
Q Consensus 530 --~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g---~Dg~I~IWDl~-tg~~l~~~~~gh~~~V~sv~fsp 603 (793)
........ ....-.+...|.++ +++.++.++ .|+.|++|++. +|+.+..+. +|...++.++|+|
T Consensus 119 ~spd~~~~~~-----~l~s~g~~~~v~~l----~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~-~~~~~v~~l~fs~ 188 (356)
T 2w18_A 119 CSSDDESEKQ-----VLLKSGNIKAVLGL----TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQF-LMPPEETILTFAE 188 (356)
T ss_dssp C------CCE-----EEEEEEEEEEEEEE----TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEE-ECCCSSCEEEEEE
T ss_pred ECCCcccccc-----EEEeCCCeEEEEec----CCCcEEEecccCCCCcEEEEEECCCCceeeeec-cCCCceeeEEeec
Confidence 00000000 00000111223332 356666664 49999999994 588888888 6999999999999
Q ss_pred ---CCCcEEEEEeCCCeEEEEECCCCCccceEEccCCC----CeEEEEEecCCCEE------------EEEeCCCeEEEE
Q 003822 604 ---HSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSK----GNVMVCFSPDDHYL------------LVSAVDNEVRQL 664 (793)
Q Consensus 604 ---dg~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~~----~~vsv~fSpdg~~L------------asgs~Dg~I~Iw 664 (793)
++ .+|++|+.|++|+|||+++++... ++.++. .+.+++|+|+|.++ ++|+.|++|++|
T Consensus 189 ~~g~~-~~LaSgS~D~TIkIWDl~TGk~l~--tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklW 265 (356)
T 2w18_A 189 VQGMQ-EALLGTTIMNNIVIWNLKTGQLLK--KMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVI 265 (356)
T ss_dssp EETST-TEEEEEETTSEEEEEETTTCCEEE--EEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEE
T ss_pred cCCCC-ceEEEecCCCcEEEEECCCCcEEE--EEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEE
Confidence 56 899999999999999999986544 443332 33357999999987 567889999999
Q ss_pred EcCCCcEEEEEeee-c-CCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCCCCccceeeeccCCc
Q 003822 665 LAVDGRVHLNFGIT-A-TGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDP 742 (793)
Q Consensus 665 Dl~tg~~~~~l~~~-~-~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~ 742 (793)
|..+++.+..+... + .+..... ..+.++. ++++|+.|++| +|||+.+|+.+. ++.||..
T Consensus 266 d~~tgk~l~v~~~~~p~Gh~~~~l--sg~~sg~-~lASgS~DgTI-kIWDl~tGk~l~--tL~gH~~------------- 326 (356)
T 2w18_A 266 NPKTTLSVGVMLYCLPPGQAGRFL--EGDVKDH-CAAAILTSGTI-AIWDLLLGQCTA--LLPPVSD------------- 326 (356)
T ss_dssp ETTTTEEEEEEEECCCTTCCCCEE--EEEEETT-EEEEEETTSCE-EEEETTTCSEEE--EECCC---------------
T ss_pred ECCCCEEEEEEEeeccCCCcceeE--ccccCCC-EEEEEcCCCcE-EEEECCCCcEEE--EecCCCC-------------
Confidence 99999987665432 2 2222232 3334466 89999999999 999999999999 8887751
Q ss_pred cccCCccEEEEEEcCCCCceeeEeeEEEeCCCcEEEEcC
Q 003822 743 FRDFNMSILAAYTRPSSKSEIVKVNLLASTDHCDKECSH 781 (793)
Q Consensus 743 ~~~h~~~V~sva~~P~~~~~iv~~~ltaS~Dg~VkvW~~ 781 (793)
..+..++|+|+ ...++ +||.|++||+|+.
T Consensus 327 -----~vvs~vafSPD-G~~La----SGS~D~TIklWd~ 355 (356)
T 2w18_A 327 -----QHWSFVKWSGT-DSHLL----AGQKDGNIFVYHY 355 (356)
T ss_dssp -----CCCCEEEECSS-SSEEE----EECTTSCEEEEEE
T ss_pred -----CeEEEEEECCC-CCEEE----EEECCCcEEEecC
Confidence 12346899996 44555 8999999999985
No 121
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.93 E-value=1.1e-24 Score=237.08 Aligned_cols=234 Identities=9% Similarity=0.014 Sum_probs=176.4
Q ss_pred CCCCEEEEEEcCCcEEEEEcCCCCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECC--------
Q 003822 509 KYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDIN-------- 580 (793)
Q Consensus 509 ~~g~~Lasgs~DgtV~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~-------- 580 (793)
.++..+++|+.||+|++||+.+++...... ...|.++.++|. +++++.|++|++|+..
T Consensus 46 ~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~-----------~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~ 111 (343)
T 3lrv_A 46 YDKWVCMCRCEDGALHFTQLKDSKTITTIT-----------TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDS 111 (343)
T ss_dssp EEEEEEEEEEETTEEEEEEESSSSCEEEEE-----------EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEET
T ss_pred CCCCEEEEECCCCcEEEEECCCCcEEEEEe-----------cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeec
Confidence 356789999999999999999876522111 234566667665 8888889999999655
Q ss_pred -CCcEEEEEcccCCCCeEEEEEcC--CCCcEEEEEeCCCeEEEEECCCCCccceEEccCCCCeEEEEEecCCCEEEEEeC
Q 003822 581 -SGRRLQVFADMHKEHINVVKFSN--HSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLVSAV 657 (793)
Q Consensus 581 -tg~~l~~~~~gh~~~V~sv~fsp--dg~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs~ 657 (793)
+++.+..+..+|.+.|.+++|+| ++ .++++|+.||+|++||+++++............+.+++|+|+|.+|++|+.
T Consensus 112 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~ 190 (343)
T 3lrv_A 112 KTNKVLREIEVDSANEIIYMYGHNEVNT-EYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSP 190 (343)
T ss_dssp TTCCEEEEEECCCSSCEEEEECCC---C-CEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECT
T ss_pred CCcceeEEeecCCCCCEEEEEcCCCCCC-CEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcC
Confidence 66666666656889999999999 88 899999999999999999886533332233334557999999999999999
Q ss_pred CCeEEEEEcCCCcEE-EEEeeecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCCCCccceee
Q 003822 658 DNEVRQLLAVDGRVH-LNFGITATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKGSGTSMFVQ 736 (793)
Q Consensus 658 Dg~I~IwDl~tg~~~-~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~ 736 (793)
||.|++||+++++.+ ..+.. .|...+..++|+|+|. +|++|+ |+.| ++||+++++.+. .+..+.
T Consensus 191 dg~i~iwd~~~~~~~~~~~~~--~h~~~v~~l~fs~~g~-~l~s~~-~~~v-~iwd~~~~~~~~--~~~~~~-------- 255 (343)
T 3lrv_A 191 DGILDVYNLSSPDQASSRFPV--DEEAKIKEVKFADNGY-WMVVEC-DQTV-VCFDLRKDVGTL--AYPTYT-------- 255 (343)
T ss_dssp TSCEEEEESSCTTSCCEECCC--CTTSCEEEEEECTTSS-EEEEEE-SSBE-EEEETTSSTTCB--SSCCCB--------
T ss_pred CCEEEEEECCCCCCCccEEec--cCCCCEEEEEEeCCCC-EEEEEe-CCeE-EEEEcCCCCcce--eecccc--------
Confidence 999999999999876 55542 3567899999999998 999999 4588 999999988766 333321
Q ss_pred eccCCccccCCccE--EEEEEcCCCCceeeEeeEEEeC-CCcEEEEcCCCCC
Q 003822 737 SLRGDPFRDFNMSI--LAAYTRPSSKSEIVKVNLLAST-DHCDKECSHGQHS 785 (793)
Q Consensus 737 sl~g~~~~~h~~~V--~sva~~P~~~~~iv~~~ltaS~-Dg~VkvW~~~~~~ 785 (793)
.|...+ .+++|+|++ ..++ +++. |+.|++|+.....
T Consensus 256 --------~~~~~~~~~~~~~~~~g-~~l~----~~s~~d~~i~v~~~~~~~ 294 (343)
T 3lrv_A 256 --------IPEFKTGTVTYDIDDSG-KNMI----AYSNESNSLTIYKFDKKT 294 (343)
T ss_dssp --------C-----CCEEEEECTTS-SEEE----EEETTTTEEEEEEECTTT
T ss_pred --------cccccccceEEEECCCC-CEEE----EecCCCCcEEEEEEcccc
Confidence 111222 469999964 3444 6667 9999999875543
No 122
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.93 E-value=1.3e-24 Score=241.79 Aligned_cols=237 Identities=11% Similarity=0.050 Sum_probs=173.3
Q ss_pred EeCCCCCEEEEEeCCCeEEEEECCCCeEEEEE---eccCCCCCEEEEEEee-------CCCCEEEEEEcCCcEEEEEcCC
Q 003822 461 YHPSISCLMVFGTLDGEIVVVNHENENIVSYI---PSFGAMNSVLGLCWLK-------KYPSKLIAGSDNGSLKLYDIRH 530 (793)
Q Consensus 461 fsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l---~~~~h~~~V~sv~fs~-------~~g~~Lasgs~DgtV~vWDl~~ 530 (793)
+.|.++.+|++|+.|++|++||..+++..... ...+|.+.|.+++|+| .++++||+|+.|++|++||+.+
T Consensus 96 ~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~ 175 (393)
T 4gq1_A 96 SSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTD 175 (393)
T ss_dssp -CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEET
T ss_pred ecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCC
Confidence 33337889999999999999999988764422 2458999999999985 2678999999999999999987
Q ss_pred CCCcccccccCCceeEecCCCCeEEEEEccCCC-EEEEEECCCcEEEEECCCCcEEEEEc--------------------
Q 003822 531 MPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDE-LFLASGYSKNIALYDINSGRRLQVFA-------------------- 589 (793)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~-~lla~g~Dg~I~IWDl~tg~~l~~~~-------------------- 589 (793)
+... ...+.|..+|.+++|+|.+. .+++++.|++|++||+++++......
T Consensus 176 ~~~~---------~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 246 (393)
T 4gq1_A 176 EGPI---------LAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVN 246 (393)
T ss_dssp TEEE---------EEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC-
T ss_pred Ccee---------eeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEeccccccee
Confidence 5432 23456778899999999886 57777789999999999876543221
Q ss_pred ----ccCCCCeEEEEEc-CCCCcEEEEEeCCCeEEEEECCCCCccceEE-----------------ccCCCCeEEEEEec
Q 003822 590 ----DMHKEHINVVKFS-NHSPSIFATSSFDQDVKLWDLRQKPIQPCYT-----------------ASSSKGNVMVCFSP 647 (793)
Q Consensus 590 ----~gh~~~V~sv~fs-pdg~~~LaTgs~Dg~IrIWDlrt~~~~~~~~-----------------l~~~~~~vsv~fSp 647 (793)
.+|...+.++.|. |++ ..+++++.|+++++||++.++....+. .......+...|+|
T Consensus 247 ~~~~~~~~~~v~~v~~~~~dg-~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (393)
T 4gq1_A 247 TCHSSGIASSLANVRWIGSDG-SGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHP 325 (393)
T ss_dssp -----CCSSSCSEEEEETTTT-CEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECS
T ss_pred eeecccccccceeeeeecCCC-CEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEcc
Confidence 2577889999987 676 899999999999999998753221111 11111122334554
Q ss_pred --CCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEc
Q 003822 648 --DDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCA 713 (793)
Q Consensus 648 --dg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv 713 (793)
++.++++|+.||.|++||+.+++....+. .++..|.+++|+|||+ +||+++.+|. .+|.+
T Consensus 326 ~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~---~~~~~V~svafspdG~-~LA~as~~Gv--~lvrL 387 (393)
T 4gq1_A 326 RYMDYFATAHSQHGLIQLINTYEKDSNSIPI---QLGMPIVDFCWHQDGS-HLAIATEGSV--LLTRL 387 (393)
T ss_dssp SCTTEEEEEETTTTEEEEEETTCTTCCEEEE---ECSSCEEEEEECTTSS-EEEEEESSEE--EEEEE
T ss_pred CCCCEEEEEECCCCEEEEEECCCCcEEEEec---CCCCcEEEEEEcCCCC-EEEEEeCCCe--EEEEE
Confidence 44567788899999999999998766654 3567899999999999 9999988774 45543
No 123
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.92 E-value=2.7e-23 Score=228.03 Aligned_cols=248 Identities=10% Similarity=0.068 Sum_probs=177.1
Q ss_pred EEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcccccccCCceeEecCCCCeEEEEEc
Q 003822 480 VVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVN 559 (793)
Q Consensus 480 VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s 559 (793)
||++.+.+.+.... +|...|.+++|+ +++++|++|+.++ +++||+.+..... . .+...+..+++.
T Consensus 3 i~s~~~~~~~~~~~--~h~~~V~~v~fs-~dg~~la~g~~~~-~~iw~~~~~~~~~----------~-~~~~~~~~~~~~ 67 (355)
T 3vu4_A 3 LGSMITRNPIVPEN--HVSNPVTDYEFN-QDQSCLILSTLKS-FEIYNVHPVAHIM----------S-QEMRHLSKVRML 67 (355)
T ss_dssp ------------------CCCCCEEEEC-TTSSEEEEECSSE-EEEEEETTEEEEE----------E-EECSCCCEEEEC
T ss_pred cccccccCCccccc--cCCCceEEEEEC-CCCCEEEEEcCCE-EEEEecCCcceee----------e-eecCCeEEEEEc
Confidence 45666666655444 799999999998 7999999988775 7899988643311 1 111246777887
Q ss_pred cCCCEEEE-EECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEECCCC-CccceEEccCC
Q 003822 560 SMDELFLA-SGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQK-PIQPCYTASSS 637 (793)
Q Consensus 560 ~~~~~lla-~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~Dg~IrIWDlrt~-~~~~~~~l~~~ 637 (793)
+.++.++. ++.|++|++||+.+++.+..+. |...|.+++|+++. ++++ .|+.|++||+.+. +....+. .
T Consensus 68 ~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~--~~~~v~~v~~~~~~---~~~~-~~~~i~i~d~~~~~~~~~~~~--~- 138 (355)
T 3vu4_A 68 HRTNYVAFVTGVKEVVHIWDDVKKQDVSRIK--VDAPVKDLFLSREF---IVVS-YGDVISVFKFGNPWKRITDDI--R- 138 (355)
T ss_dssp TTSSEEEEECSSTTEEEEEETTTTEEEEEEE--CSSCEEEEEECSSE---EEEE-ETTEEEEEESSTTCCBSSCCE--E-
T ss_pred CCCCEEEEEECCccEEEEEECCCCcEEEEEE--CCCceEEEEEcCCE---EEEE-EcCEEEEEECCCCceeeEEec--c-
Confidence 88887755 4568999999999999999987 77899999998764 4443 3789999999886 3332222 1
Q ss_pred CCeEEEEEecCCCEEEE--EeCCCeEEEEEcCCCcE----------------EEEEeeecCCCCCcEEEEEeeCCCeEEE
Q 003822 638 KGNVMVCFSPDDHYLLV--SAVDNEVRQLLAVDGRV----------------HLNFGITATGSSQNYTRSYYLNGRDYIV 699 (793)
Q Consensus 638 ~~~vsv~fSpdg~~Las--gs~Dg~I~IwDl~tg~~----------------~~~l~~~~~~~~~v~s~afspdg~~~L~ 699 (793)
....+++++ .++++ |+.||.|++||+.+++. +..+ ..|...+..++|+|+|. +|+
T Consensus 139 -~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~---~~h~~~v~~~~~s~~g~-~l~ 211 (355)
T 3vu4_A 139 -FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLI---KAHTNPIKMVRLNRKSD-MVA 211 (355)
T ss_dssp -EEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEE---CCCSSCEEEEEECTTSS-EEE
T ss_pred -CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEE---EccCCceEEEEECCCCC-EEE
Confidence 222367777 66666 57899999999998751 3334 35677899999999998 999
Q ss_pred EEeCCCc-EEEEEEcCCCcEEEeeeec-CCCCCccceeeeccCCccccCCccEEEEEEcCCCCceeeEeeEEEeCCCcEE
Q 003822 700 SGSCDEH-VVRICCAQTGRRLRDISLE-GKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKSEIVKVNLLASTDHCDK 777 (793)
Q Consensus 700 Sgs~Dg~-II~IWDv~tg~~l~~~~L~-gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~~~~iv~~~ltaS~Dg~Vk 777 (793)
+|+.|++ | ++||+.+++.+. ++. | .|...|.+++|+|+ ...++ +|+.|++|+
T Consensus 212 s~s~d~~~v-~iwd~~~~~~~~--~~~~g------------------~h~~~v~~~~~s~~-~~~l~----s~s~d~~v~ 265 (355)
T 3vu4_A 212 TCSQDGTII-RVFKTEDGVLVR--EFRRG------------------LDRADVVDMKWSTD-GSKLA----VVSDKWTLH 265 (355)
T ss_dssp EEETTCSEE-EEEETTTCCEEE--EEECT------------------TCCSCEEEEEECTT-SCEEE----EEETTCEEE
T ss_pred EEeCCCCEE-EEEECCCCcEEE--EEEcC------------------CCCCcEEEEEECCC-CCEEE----EEECCCEEE
Confidence 9999998 8 999999999998 665 3 13357999999996 44555 899999999
Q ss_pred EEcCCCC
Q 003822 778 ECSHGQH 784 (793)
Q Consensus 778 vW~~~~~ 784 (793)
+|+....
T Consensus 266 iw~~~~~ 272 (355)
T 3vu4_A 266 VFEIFND 272 (355)
T ss_dssp EEESSCC
T ss_pred EEEccCC
Confidence 9998654
No 124
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.92 E-value=1.3e-22 Score=226.32 Aligned_cols=237 Identities=11% Similarity=0.105 Sum_probs=195.8
Q ss_pred ceEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEE-EEEcCCcEEEEEcCCCCC
Q 003822 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLI-AGSDNGSLKLYDIRHMPP 533 (793)
Q Consensus 455 ~V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~La-sgs~DgtV~vWDl~~~~~ 533 (793)
.|.+++|+| ++.++++++.|+.|++||+++++.+..+. .|...+.+++|+ ++++.++ +++.|+.|++||+++++.
T Consensus 171 ~v~~~~~~~-~~~~~~s~~~d~~v~~~d~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~l~~~~~~~~~i~~~d~~~~~~ 246 (433)
T 3bws_A 171 FVETISIPE-HNELWVSQMQANAVHVFDLKTLAYKATVD--LTGKWSKILLYD-PIRDLVYCSNWISEDISVIDRKTKLE 246 (433)
T ss_dssp EEEEEEEGG-GTEEEEEEGGGTEEEEEETTTCCEEEEEE--CSSSSEEEEEEE-TTTTEEEEEETTTTEEEEEETTTTEE
T ss_pred ceeEEEEcC-CCEEEEEECCCCEEEEEECCCceEEEEEc--CCCCCeeEEEEc-CCCCEEEEEecCCCcEEEEECCCCcE
Confidence 389999999 89999999999999999999999888876 788899999998 6777775 555899999999987643
Q ss_pred cccccccCCceeEecCCCCeEEEEEccCCCEEEEEE--------CCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCC
Q 003822 534 SIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASG--------YSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHS 605 (793)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g--------~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg 605 (793)
. ..+.....+.+++|+|++..+++++ .||.|++||+.+++.+..+. |...+.+++|+|++
T Consensus 247 ~----------~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~--~~~~~~~~~~~~~g 314 (433)
T 3bws_A 247 I----------RKTDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIG--PPGNKRHIVSGNTE 314 (433)
T ss_dssp E----------EECCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEE--EEECEEEEEECSST
T ss_pred E----------EEecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeecc--CCCCcceEEECCCC
Confidence 1 1223335589999999999998888 47899999999998888775 67789999999999
Q ss_pred CcEEEEEeCCCeEEEEECCCCCccceEEccCCCCeEEEEEecCCCEEEEEeC---------------CCeEEEEEcCCCc
Q 003822 606 PSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLVSAV---------------DNEVRQLLAVDGR 670 (793)
Q Consensus 606 ~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs~---------------Dg~I~IwDl~tg~ 670 (793)
..++++++.|+.|++||+++++. ...+.....+..++|+|+|+++++++. ||.|++||+.+++
T Consensus 315 ~~l~~~~~~~~~v~v~d~~~~~~--~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~ 392 (433)
T 3bws_A 315 NKIYVSDMCCSKIEVYDLKEKKV--QKSIPVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDT 392 (433)
T ss_dssp TEEEEEETTTTEEEEEETTTTEE--EEEEECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTE
T ss_pred CEEEEEecCCCEEEEEECCCCcE--EEEecCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCc
Confidence 55778889999999999998743 334445556677999999999999886 5799999999999
Q ss_pred EEEEEeeecCCCCCcEEEEEeeCCCeEEEEEe-CCCcEEEEEEcCC
Q 003822 671 VHLNFGITATGSSQNYTRSYYLNGRDYIVSGS-CDEHVVRICCAQT 715 (793)
Q Consensus 671 ~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs-~Dg~II~IWDv~t 715 (793)
.+..+. +...+..++|+|+|+ +|++++ .|+.| ++|++..
T Consensus 393 ~~~~~~----~~~~~~~~~~s~dg~-~l~~~~~~d~~i-~v~~~~~ 432 (433)
T 3bws_A 393 VKEFWE----AGNQPTGLDVSPDNR-YLVISDFLDHQI-RVYRRDG 432 (433)
T ss_dssp EEEEEE----CSSSEEEEEECTTSC-EEEEEETTTTEE-EEEEETT
T ss_pred EEEEec----CCCCCceEEEcCCCC-EEEEEECCCCeE-EEEEecC
Confidence 888775 345788999999999 777666 59999 9999863
No 125
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.90 E-value=1.2e-23 Score=240.94 Aligned_cols=239 Identities=14% Similarity=0.191 Sum_probs=183.5
Q ss_pred ceEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCC-----CEEEEEEeeCCCCEEEEEEcCCcEEEEEcC
Q 003822 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMN-----SVLGLCWLKKYPSKLIAGSDNGSLKLYDIR 529 (793)
Q Consensus 455 ~V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~-----~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~ 529 (793)
.|++++|+| +|.+||+++.||+|+|||.++ .+..+. |.. .|.+++|+ |+|++||+|+.||+|++||+.
T Consensus 87 ~V~~vawSP-dG~~LAs~s~dg~V~iwd~~~--~l~~l~---~~~~~~~~sv~svafS-PDG~~LAsgs~DGtVkIWd~~ 159 (588)
T 2j04_A 87 YPRVCKPSP-IDDWMAVLSNNGNVSVFKDNK--MLTNLD---SKGNLSSRTYHCFEWN-PIESSIVVGNEDGELQFFSIR 159 (588)
T ss_dssp CEEEEEECS-SSSCEEEEETTSCEEEEETTE--EEEECC---CSSCSTTTCEEEEEEC-SSSSCEEEEETTSEEEEEECC
T ss_pred cEEEEEECC-CCCEEEEEeCCCcEEEEeCCc--eeeecc---CCCccccccEEEEEEc-CCCCEEEEEcCCCEEEEEECC
Confidence 399999999 999999999999999999654 444443 443 59999998 799999999999999999999
Q ss_pred CCCC------cccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcE---EEEEcccCCCCeEEEE
Q 003822 530 HMPP------SIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRR---LQVFADMHKEHINVVK 600 (793)
Q Consensus 530 ~~~~------~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~---l~~~~~gh~~~V~sv~ 600 (793)
++.. .+..+..+. ..|...|.+++|+|++ +++++.|++|++||+..+.. ..++..+|...|.+++
T Consensus 160 ~~~l~~~~~i~l~ti~~~~----~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~sva 233 (588)
T 2j04_A 160 KNSENTPEFYFESSIRLSD----AGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLK 233 (588)
T ss_dssp CCTTTCCCCEEEEEEECSC----TTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEE
T ss_pred CCccccccceeeeeeeccc----ccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEE
Confidence 8642 111111111 2345789999999877 88899999999999998773 4566446889999999
Q ss_pred EcCCCCcEEEEEeCCCeEEEEECCCCCccceEEccCCCCeE-EEEE--ecCCCEEEEEeCCCeEEEEEcCCCcEEEEEee
Q 003822 601 FSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCF--SPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGI 677 (793)
Q Consensus 601 fspdg~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~~~~v-sv~f--Spdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~ 677 (793)
|+ | ..+|+++ +++|++||+.++... .... +|...+ .++| +|++..+++++.||+ ++|...
T Consensus 234 Fs--g-~~LASa~-~~tIkLWd~~~~~~~-~~~~-gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d---------- 296 (588)
T 2j04_A 234 IV--D-YKVVLTC-PGYVHKIDLKNYSIS-SLKT-GSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED---------- 296 (588)
T ss_dssp EE--T-TEEEEEC-SSEEEEEETTTTEEE-EEEC-SCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS----------
T ss_pred EE--C-CEEEEEe-CCeEEEEECCCCeEE-EEEc-CCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec----------
Confidence 99 5 6888887 699999999886322 3343 455544 6999 999999999999999 999976
Q ss_pred ecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCCCCccceeeeccCCccccCCccEEEEEEcC
Q 003822 678 TATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRP 757 (793)
Q Consensus 678 ~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P 757 (793)
.++++|++. .+++ .|+++ ++|+...+. +. .+++ ...|.+++++|
T Consensus 297 ---------~~~~spd~~-l~a~--~d~~v-~lW~~~g~~-l~--~~~~--------------------~~~I~~va~SP 340 (588)
T 2j04_A 297 ---------ELHVTADNI-IAPY--LEKKF-KKWSTIWNE-FN--NYET--------------------TLVIHGISLSP 340 (588)
T ss_dssp ---------SEEEECCCS-SHHH--HHHHH-HHTTTTTTS-SS--SSCC--------------------EEEEEEEEECT
T ss_pred ---------cEEECCCce-EEEE--cCCEE-EEEECCCCc-ee--eecc--------------------ceEEEEEEECC
Confidence 145889987 5444 38999 999875443 22 2221 34689999999
Q ss_pred CC
Q 003822 758 SS 759 (793)
Q Consensus 758 ~~ 759 (793)
++
T Consensus 341 dG 342 (588)
T 2j04_A 341 DG 342 (588)
T ss_dssp TS
T ss_pred CC
Confidence 74
No 126
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.90 E-value=1.1e-21 Score=228.09 Aligned_cols=284 Identities=14% Similarity=0.107 Sum_probs=217.1
Q ss_pred EeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEc--CCCCCccccc
Q 003822 461 YHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDI--RHMPPSIRGM 538 (793)
Q Consensus 461 fsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl--~~~~~~~~~~ 538 (793)
|+| ++.++++++.|++|.+||..+++.+..+.. ++. +..++|+ ++++++++++.|++|++||+ .+++.
T Consensus 145 ~~p-~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~-g~~--~~~v~~s-pdg~~l~v~~~d~~V~v~D~~~~t~~~----- 214 (543)
T 1nir_A 145 LDL-PNLFSVTLRDAGQIALVDGDSKKIVKVIDT-GYA--VHISRMS-ASGRYLLVIGRDARIDMIDLWAKEPTK----- 214 (543)
T ss_dssp CCG-GGEEEEEEGGGTEEEEEETTTCCEEEEEEC-STT--EEEEEEC-TTSCEEEEEETTSEEEEEETTSSSCEE-----
T ss_pred cCC-CCEEEEEEcCCCeEEEEECCCceEEEEEec-Ccc--cceEEEC-CCCCEEEEECCCCeEEEEECcCCCCcE-----
Confidence 678 778999999999999999999999988874 333 8899997 89999999999999999999 55432
Q ss_pred ccCCceeEecCCCCeEEEEEcc----CCCEEEEEEC-CCcEEEEECCCCcEEEEEcc-c--------CC-CCeEEEEEcC
Q 003822 539 HYGAGTVTFDEFDQLTSVHVNS----MDELFLASGY-SKNIALYDINSGRRLQVFAD-M--------HK-EHINVVKFSN 603 (793)
Q Consensus 539 ~~~~~~~~~~~~~~V~sv~~s~----~~~~lla~g~-Dg~I~IWDl~tg~~l~~~~~-g--------h~-~~V~sv~fsp 603 (793)
...+.....+..++|+| ++.++++++. +++|.+||..+++++.++.. + |. ..+..+.++|
T Consensus 215 -----~~~i~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~ 289 (543)
T 1nir_A 215 -----VAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASH 289 (543)
T ss_dssp -----EEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECS
T ss_pred -----EEEEecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECC
Confidence 11233445689999999 8999988884 89999999999999998862 1 22 3789999999
Q ss_pred CCCcEEEEEeCCCeEEEEECCCCCccceEEccCCCCeEEEEEecCCCEEEEEe-CCCeEEEEEcCCCcEEEEEeeecC-C
Q 003822 604 HSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLVSA-VDNEVRQLLAVDGRVHLNFGITAT-G 681 (793)
Q Consensus 604 dg~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs-~Dg~I~IwDl~tg~~~~~l~~~~~-~ 681 (793)
+++.++++...++.|.+||+.+.+...+..+.....+..+.|+|+|+++++++ .+++|.+||+.+++++..+..... +
T Consensus 290 ~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph 369 (543)
T 1nir_A 290 EHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPH 369 (543)
T ss_dssp SSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBC
T ss_pred CCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCC
Confidence 98788888889999999999886544333444434455699999999887665 588999999999999888764211 2
Q ss_pred CCCcEEEEEeeCCCeEEEEEe-CCCcEEEEEEcCC-------CcEEEeeeecCCCCCccceeeeccCCccccCCccEEEE
Q 003822 682 SSQNYTRSYYLNGRDYIVSGS-CDEHVVRICCAQT-------GRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAA 753 (793)
Q Consensus 682 ~~~v~s~afspdg~~~L~Sgs-~Dg~II~IWDv~t-------g~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sv 753 (793)
...... .++|+++.+++++. .|++| .+||+.+ ++.++ ++.+|. ..+..+
T Consensus 370 ~g~g~~-~~~p~~g~~~~s~~~~d~~V-~v~d~~~~~~~~~~~~~v~--~l~~~g-------------------~~~~~v 426 (543)
T 1nir_A 370 PGRGAN-FVHPKYGPVWSTSHLGDGSI-SLIGTDPKNHPQYAWKKVA--ELQGQG-------------------GGSLFI 426 (543)
T ss_dssp CTTCEE-EEETTTEEEEEEEBSSSSEE-EEEECCTTTCTTTBTSEEE--EEECSC-------------------SCCCCE
T ss_pred CCCCcc-cCCCCCccEEEeccCCCceE-EEEEeCCCCCchhcCeEEE--EEEcCC-------------------CCceEE
Confidence 112222 25777665777776 67899 9999998 78888 776665 245678
Q ss_pred EEcCCCCceeeEeeEEEe-------CCCcEEEEcCCCCCCC
Q 003822 754 YTRPSSKSEIVKVNLLAS-------TDHCDKECSHGQHSRP 787 (793)
Q Consensus 754 a~~P~~~~~iv~~~ltaS-------~Dg~VkvW~~~~~~~~ 787 (793)
++||+++.. + +++ .+++|.+|+.......
T Consensus 427 ~~~pdg~~l-~----v~~~~~~~~~~~~~v~v~d~~~~~~~ 462 (543)
T 1nir_A 427 KTHPKSSHL-Y----VDTTFNPDARISQSVAVFDLKNLDAK 462 (543)
T ss_dssp ECCTTCCEE-E----ECCTTCSSHHHHTCEEEEETTCTTSC
T ss_pred EcCCCCCcE-E----EecCCCCCcccCceEEEEECCCCCCC
Confidence 899975433 3 343 2789999998866544
No 127
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.89 E-value=7.4e-22 Score=213.55 Aligned_cols=215 Identities=10% Similarity=0.070 Sum_probs=145.8
Q ss_pred eEEEEEeCCC----CCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEE--cCCcEEEEEcC
Q 003822 456 PRQFEYHPSI----SCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGS--DNGSLKLYDIR 529 (793)
Q Consensus 456 V~~vafsP~d----~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs--~DgtV~vWDl~ 529 (793)
|++++|+| + +.++++++.+ +.+|++.+++ ++.+++ .|+.|++|++.
T Consensus 114 v~sla~sp-d~~~~~~~l~s~g~~--~~v~~l~~g~-------------------------lv~ss~~g~d~~V~~~~~s 165 (356)
T 2w18_A 114 IRALFCSS-DDESEKQVLLKSGNI--KAVLGLTKRR-------------------------LVSSSGTLSDQQVEVMTFA 165 (356)
T ss_dssp EEEECC-------CCEEEEEEEEE--EEEEEETTTE-------------------------EEEEESSSTTCEEEEEEEC
T ss_pred eEEEEECC-CccccccEEEeCCCe--EEEEecCCCc-------------------------EEEecccCCCCcEEEEEEC
Confidence 66677777 5 6666666532 5556544333 333322 46666666663
Q ss_pred CCCCcccccccCCceeEecCCCCeEEEEEcc---CCCEEEEEECCCcEEEEECCCCcEEEEEcccC--CCCeEEEEEcCC
Q 003822 530 HMPPSIRGMHYGAGTVTFDEFDQLTSVHVNS---MDELFLASGYSKNIALYDINSGRRLQVFADMH--KEHINVVKFSNH 604 (793)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~---~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh--~~~V~sv~fspd 604 (793)
........ ...|...+..++|++ ++..+++++.|++|+|||+.+|++++++..+| ...+.+++|+|+
T Consensus 166 ~dG~~~~s--------~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpd 237 (356)
T 2w18_A 166 EDGGGKEN--------QFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEM 237 (356)
T ss_dssp TTSCEEEE--------EEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEET
T ss_pred CCCceeee--------eccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCC
Confidence 32111111 123445677788887 56788888999999999999999999998322 346788899999
Q ss_pred CCcEE------------EEEeCCCeEEEEECCCCCccceEEc---cCCCCeEEEEEecCCCEEEEEeCCCeEEEEEcCCC
Q 003822 605 SPSIF------------ATSSFDQDVKLWDLRQKPIQPCYTA---SSSKGNVMVCFSPDDHYLLVSAVDNEVRQLLAVDG 669 (793)
Q Consensus 605 g~~~L------------aTgs~Dg~IrIWDlrt~~~~~~~~l---~~~~~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg 669 (793)
| .++ ++|+.|++|++||..+++...+... .+|...+ +..+.++..+++|+.|++|+|||+.+|
T Consensus 238 G-~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~-lsg~~sg~~lASgS~DgTIkIWDl~tG 315 (356)
T 2w18_A 238 G-LLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRF-LEGDVKDHCAAAILTSGTIAIWDLLLG 315 (356)
T ss_dssp T-EEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCE-EEEEEETTEEEEEETTSCEEEEETTTC
T ss_pred C-CEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCccee-EccccCCCEEEEEcCCCcEEEEECCCC
Confidence 8 665 6788999999999998854433321 2443332 333444889999999999999999999
Q ss_pred cEEEEEeeecCCCCCcE-EEEEeeCCCeEEEEEeCCCcEEEEEEc
Q 003822 670 RVHLNFGITATGSSQNY-TRSYYLNGRDYIVSGSCDEHVVRICCA 713 (793)
Q Consensus 670 ~~~~~l~~~~~~~~~v~-s~afspdg~~~L~Sgs~Dg~II~IWDv 713 (793)
+++.++. .|...+. .++|+|||+ +|++|+.|++| +|||+
T Consensus 316 k~l~tL~---gH~~~vvs~vafSPDG~-~LaSGS~D~TI-klWd~ 355 (356)
T 2w18_A 316 QCTALLP---PVSDQHWSFVKWSGTDS-HLLAGQKDGNI-FVYHY 355 (356)
T ss_dssp SEEEEEC---CC--CCCCEEEECSSSS-EEEEECTTSCE-EEEEE
T ss_pred cEEEEec---CCCCCeEEEEEECCCCC-EEEEEECCCcE-EEecC
Confidence 9999885 3444444 589999999 99999999999 99986
No 128
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.88 E-value=7.1e-21 Score=213.62 Aligned_cols=279 Identities=15% Similarity=0.104 Sum_probs=201.9
Q ss_pred eEEEEEeCCCCCEEEEEe----CCC----eEEEEEC--CCCeEEEEEeccCCCCCEEEEEEeeC-------------CCC
Q 003822 456 PRQFEYHPSISCLMVFGT----LDG----EIVVVNH--ENENIVSYIPSFGAMNSVLGLCWLKK-------------YPS 512 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs----~DG----~I~VWd~--~t~~~i~~l~~~~h~~~V~sv~fs~~-------------~g~ 512 (793)
+...+|.+.....+++|+ .+| +|++||+ .+++.+......+|...+..+++.+. .+.
T Consensus 65 ~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~ 144 (415)
T 2hqs_A 65 VQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRT 144 (415)
T ss_dssp CCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTC
T ss_pred cCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCC
Confidence 455668775667887887 467 8999999 89887755444478777777766421 155
Q ss_pred EEEEEEcC------CcEEEEEcCCCCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCC---cEEEEECCCCc
Q 003822 513 KLIAGSDN------GSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSK---NIALYDINSGR 583 (793)
Q Consensus 513 ~Lasgs~D------gtV~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg---~I~IWDl~tg~ 583 (793)
.++.++.+ ++|++||+..... .....+...+.+++|+|++..+++++.++ .|++||+.+++
T Consensus 145 ~l~~~s~~~~~~~~~~i~i~d~~g~~~----------~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~ 214 (415)
T 2hqs_A 145 RIAYVVQTNGGQFPYELRVSDYDGYNQ----------FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA 214 (415)
T ss_dssp EEEEEEECSSSSCCEEEEEEETTSCSC----------EEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC
T ss_pred EEEEEEecCCCCccceEEEEcCCCCCC----------EEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCc
Confidence 66666654 7999999975332 11223457799999999999999998764 99999999998
Q ss_pred EEEEEcccCCCCeEEEEEcCCCCcEEE-EEeCCCe--EEEEECCCCCccceEEccCCCC-eEEEEEecCCCEEEEEeCC-
Q 003822 584 RLQVFADMHKEHINVVKFSNHSPSIFA-TSSFDQD--VKLWDLRQKPIQPCYTASSSKG-NVMVCFSPDDHYLLVSAVD- 658 (793)
Q Consensus 584 ~l~~~~~gh~~~V~sv~fspdg~~~La-Tgs~Dg~--IrIWDlrt~~~~~~~~l~~~~~-~vsv~fSpdg~~Lasgs~D- 658 (793)
... +. .|...+.+++|+|+| +.|+ +++.|+. |++||+++++. ..+..+.. ...++|+|||++|++++.+
T Consensus 215 ~~~-l~-~~~~~~~~~~~spdg-~~la~~~~~~g~~~i~~~d~~~~~~---~~l~~~~~~~~~~~~spdg~~l~~~s~~~ 288 (415)
T 2hqs_A 215 VRQ-VA-SFPRHNGAPAFSPDG-SKLAFALSKTGSLNLYVMDLASGQI---RQVTDGRSNNTEPTWFPDSQNLAFTSDQA 288 (415)
T ss_dssp EEE-EE-CCSSCEEEEEECTTS-SEEEEEECTTSSCEEEEEETTTCCE---EECCCCSSCEEEEEECTTSSEEEEEECTT
T ss_pred EEE-ee-cCCCcccCEEEcCCC-CEEEEEEecCCCceEEEEECCCCCE---EeCcCCCCcccceEECCCCCEEEEEECCC
Confidence 764 44 488899999999999 5555 7776665 99999988743 33444444 4469999999999988863
Q ss_pred C--eEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCCCeEEEEEeCC---CcEEEEEEcCCCcEEEeeeecCCCCCccc
Q 003822 659 N--EVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNGRDYIVSGSCD---EHVVRICCAQTGRRLRDISLEGKGSGTSM 733 (793)
Q Consensus 659 g--~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~D---g~II~IWDv~tg~~l~~~~L~gh~~~~s~ 733 (793)
+ .|++||+.+++.. .+. .+...+..++|+|+|+ +|++++.+ ..| ++||+.+++... +.++.
T Consensus 289 g~~~i~~~d~~~~~~~-~l~---~~~~~~~~~~~spdG~-~l~~~~~~~g~~~i-~~~d~~~~~~~~---l~~~~----- 354 (415)
T 2hqs_A 289 GRPQVYKVNINGGAPQ-RIT---WEGSQNQDADVSSDGK-FMVMVSSNGGQQHI-AKQDLATGGVQV---LSSTF----- 354 (415)
T ss_dssp SSCEEEEEETTSSCCE-ECC---CSSSEEEEEEECTTSS-EEEEEEECSSCEEE-EEEETTTCCEEE---CCCSS-----
T ss_pred CCcEEEEEECCCCCEE-EEe---cCCCcccCeEECCCCC-EEEEEECcCCceEE-EEEECCCCCEEE---ecCCC-----
Confidence 4 7888899888743 222 2345677899999999 77776654 467 999999987643 22221
Q ss_pred eeeeccCCccccCCccEEEEEEcCCCCceeeEeeEEEeCCC---cEEEEcCCCC
Q 003822 734 FVQSLRGDPFRDFNMSILAAYTRPSSKSEIVKVNLLASTDH---CDKECSHGQH 784 (793)
Q Consensus 734 ~v~sl~g~~~~~h~~~V~sva~~P~~~~~iv~~~ltaS~Dg---~VkvW~~~~~ 784 (793)
.+.+++|+|++. .++ +++.|+ .|.+|+....
T Consensus 355 ---------------~~~~~~~spdg~-~l~----~~s~~~~~~~l~~~d~~g~ 388 (415)
T 2hqs_A 355 ---------------LDETPSLAPNGT-MVI----YSSSQGMGSVLNLVSTDGR 388 (415)
T ss_dssp ---------------SCEEEEECTTSS-EEE----EEEEETTEEEEEEEETTSC
T ss_pred ---------------CcCCeEEcCCCC-EEE----EEEcCCCccEEEEEECCCC
Confidence 578899999754 344 455554 7888987644
No 129
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.88 E-value=6.5e-20 Score=196.72 Aligned_cols=289 Identities=12% Similarity=0.066 Sum_probs=201.1
Q ss_pred EeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEc-CCcEEEEEcCCCCCcccccc
Q 003822 461 YHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSD-NGSLKLYDIRHMPPSIRGMH 539 (793)
Q Consensus 461 fsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~-DgtV~vWDl~~~~~~~~~~~ 539 (793)
|.+..+..+++++.++.|.+||..+++....+. .+...+ .++|+ ++++++++++. ++.|.+||..+++.....
T Consensus 5 ~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~--~~~~~~-~~~~s-~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~-- 78 (331)
T 3u4y_A 5 FQTTSNFGIVVEQHLRRISFFSTDTLEILNQIT--LGYDFV-DTAIT-SDCSNVVVTSDFCQTLVQIETQLEPPKVVA-- 78 (331)
T ss_dssp --CCCCEEEEEEGGGTEEEEEETTTCCEEEEEE--CCCCEE-EEEEC-SSSCEEEEEESTTCEEEEEECSSSSCEEEE--
T ss_pred EcCCCCEEEEEecCCCeEEEEeCcccceeeeEE--ccCCcc-eEEEc-CCCCEEEEEeCCCCeEEEEECCCCceeEEe--
Confidence 555355568888899999999999999888776 334556 99997 78887666665 899999999886541111
Q ss_pred cCCceeEecCCCCeEEEEEccCCCEEEEEECC-C--cEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeCCC
Q 003822 540 YGAGTVTFDEFDQLTSVHVNSMDELFLASGYS-K--NIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQ 616 (793)
Q Consensus 540 ~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~D-g--~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~Dg 616 (793)
...+..+..+++|+|++..++++..+ + .|.+||+.+++.+..+. +...+.+++|+|+|..+++++..++
T Consensus 79 ------~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~--~~~~~~~~~~spdg~~l~~~~~~~~ 150 (331)
T 3u4y_A 79 ------IQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIP--IPYDAVGIAISPNGNGLILIDRSSA 150 (331)
T ss_dssp ------EEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEE--CCTTEEEEEECTTSSCEEEEEETTT
T ss_pred ------cccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEE--CCCCccceEECCCCCEEEEEecCCC
Confidence 11122333448999999988844444 3 89999999999988887 4456799999999955666667778
Q ss_pred e-EEEEECCCCCccc---eEEccCCCCeEEEEEecCCCEEEEEe-CCCeEEEEEcCCCcE---EEEEeeecCCCCCcEEE
Q 003822 617 D-VKLWDLRQKPIQP---CYTASSSKGNVMVCFSPDDHYLLVSA-VDNEVRQLLAVDGRV---HLNFGITATGSSQNYTR 688 (793)
Q Consensus 617 ~-IrIWDlrt~~~~~---~~~l~~~~~~vsv~fSpdg~~Lasgs-~Dg~I~IwDl~tg~~---~~~l~~~~~~~~~v~s~ 688 (793)
. |.+|++....... .........+..++|+|+|+++++++ .++.|++||+.+++. +..+. ....+..+
T Consensus 151 ~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~----~~~~~~~~ 226 (331)
T 3u4y_A 151 NTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVG----TNNLPGTI 226 (331)
T ss_dssp TEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEE----CSSCCCCE
T ss_pred ceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeecc----CCCCCceE
Confidence 8 9999998642211 12223444566799999999776665 588999999999987 66664 33567789
Q ss_pred EEeeCCCeEEEEE-eCCCcEEEEEEcCCCcEEEeeeecCCCCCccceeeeccCCccccCCccEEEEEEcCCCCceeeEee
Q 003822 689 SYYLNGRDYIVSG-SCDEHVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKSEIVKVN 767 (793)
Q Consensus 689 afspdg~~~L~Sg-s~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~~~~iv~~~ 767 (793)
+|+|+|+ +++.+ ..++.| .+||..+++....-.+..+- ...+ .....+..++|+|++...++
T Consensus 227 ~~spdg~-~l~v~~~~~~~i-~~~d~~~~~~~~~~~~~~~~----------~~~~--~~~~~~~~~~~spdg~~l~v--- 289 (331)
T 3u4y_A 227 VVSRDGS-TVYVLTESTVDV-FNFNQLSGTLSFVKSFGHGL----------LIDP--RPLFGANQMALNKTETKLFI--- 289 (331)
T ss_dssp EECTTSS-EEEEECSSEEEE-EEEETTTTEEEEEEEEECCC----------CCCC--GGGTTCCCEEECTTSSEEEE---
T ss_pred EECCCCC-EEEEEEcCCCEE-EEEECCCCceeeeccccccc----------ccCC--CCcccccceEECCCCCEEEE---
Confidence 9999999 55544 456677 99999999873211332221 0000 01112356899998654444
Q ss_pred EEEeCCCcEEEEcCCCCC
Q 003822 768 LLASTDHCDKECSHGQHS 785 (793)
Q Consensus 768 ltaS~Dg~VkvW~~~~~~ 785 (793)
++..++.|++|+...+.
T Consensus 290 -~~~~~~~v~v~d~~~~~ 306 (331)
T 3u4y_A 290 -SANISRELKVFTISGKV 306 (331)
T ss_dssp -EETTTTEEEEEETTSCE
T ss_pred -ecCCCCcEEEEEecCCc
Confidence 55667899999987654
No 130
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.87 E-value=3.5e-20 Score=198.49 Aligned_cols=274 Identities=10% Similarity=0.090 Sum_probs=186.7
Q ss_pred CEEEEEeCCCeEEEEECC-CCe--EEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcC-CcEEEEEcC--CCCCccccccc
Q 003822 467 CLMVFGTLDGEIVVVNHE-NEN--IVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDN-GSLKLYDIR--HMPPSIRGMHY 540 (793)
Q Consensus 467 ~~Lasgs~DG~I~VWd~~-t~~--~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~D-gtV~vWDl~--~~~~~~~~~~~ 540 (793)
.++++++.++.|++|+++ +++ .+..+ .|...+.+++|+ ++++++++++.+ +.|.+|++. ++....
T Consensus 6 ~l~~~~~~~~~v~~~~~~~~~~~~~~~~~---~~~~~~~~~~~s-pdg~~l~~~~~~~~~v~~~~~~~~~~~~~~----- 76 (343)
T 1ri6_A 6 TVYIASPESQQIHVWNLNHEGALTLTQVV---DVPGQVQPMVVS-PDKRYLYVGVRPEFRVLAYRIAPDDGALTF----- 76 (343)
T ss_dssp EEEEEEGGGTEEEEEEECTTSCEEEEEEE---ECSSCCCCEEEC-TTSSEEEEEETTTTEEEEEEECTTTCCEEE-----
T ss_pred EEEEeCCCCCeEEEEEECCCCcEEEeeeE---ecCCCCceEEEC-CCCCEEEEeecCCCeEEEEEecCCCCceee-----
Confidence 345555789999999995 343 23333 566788999997 789988888876 999999998 333211
Q ss_pred CCceeEecCCCCeEEEEEccCCCEEEEEEC-CCcEEEEECC---CCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEe-CC
Q 003822 541 GAGTVTFDEFDQLTSVHVNSMDELFLASGY-SKNIALYDIN---SGRRLQVFADMHKEHINVVKFSNHSPSIFATSS-FD 615 (793)
Q Consensus 541 ~~~~~~~~~~~~V~sv~~s~~~~~lla~g~-Dg~I~IWDl~---tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs-~D 615 (793)
...+.....+..++|+|++..+++++. ++.|.+||+. +++.+..+. ....+.+++|+|++ +.+++++ .+
T Consensus 77 ---~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~--~~~~~~~~~~s~dg-~~l~~~~~~~ 150 (343)
T 1ri6_A 77 ---AAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVE--GLDGCHSANISPDN-RTLWVPALKQ 150 (343)
T ss_dssp ---EEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEEC--CCTTBCCCEECTTS-SEEEEEEGGG
T ss_pred ---ccccccCCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCcccccccccc--CCCCceEEEECCCC-CEEEEecCCC
Confidence 112222346789999999998888875 7899999994 444555555 33468899999999 5666666 89
Q ss_pred CeEEEEECCC-CCccce----EEccCCCCeEEEEEecCCCEEEEEe-CCCeEEEEEcC--CCcE--EEEEeeecCC---C
Q 003822 616 QDVKLWDLRQ-KPIQPC----YTASSSKGNVMVCFSPDDHYLLVSA-VDNEVRQLLAV--DGRV--HLNFGITATG---S 682 (793)
Q Consensus 616 g~IrIWDlrt-~~~~~~----~~l~~~~~~vsv~fSpdg~~Lasgs-~Dg~I~IwDl~--tg~~--~~~l~~~~~~---~ 682 (793)
+.|++||+.+ ++.... ........+..++|+|+|+++++++ .++.|.+|++. +++. ...+...+.+ .
T Consensus 151 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 230 (343)
T 1ri6_A 151 DRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDT 230 (343)
T ss_dssp TEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSC
T ss_pred CEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCcccccc
Confidence 9999999987 543322 2333334556799999999887665 78999999995 3543 2223211111 2
Q ss_pred CCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcC--CCc--EEEeeeecCCCCCccceeeeccCCccccCCccEEEEEEcCC
Q 003822 683 SQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQ--TGR--RLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPS 758 (793)
Q Consensus 683 ~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~--tg~--~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~ 758 (793)
..+..++|+|+|+.+++++..++.+ ++||+. +++ .+. .+..+. .+.+++|+|+
T Consensus 231 ~~~~~i~~s~dg~~l~v~~~~~~~i-~v~d~~~~~~~~~~~~--~~~~~~--------------------~~~~~~~s~d 287 (343)
T 1ri6_A 231 RWAADIHITPDGRHLYACDRTASLI-TVFSVSEDGSVLSKEG--FQPTET--------------------QPRGFNVDHS 287 (343)
T ss_dssp CCEEEEEECTTSSEEEEEETTTTEE-EEEEECTTSCCEEEEE--EEECSS--------------------SCCCEEECTT
T ss_pred CCccceEECCCCCEEEEEecCCCEE-EEEEEcCCCCceEEee--eecCCC--------------------ccceEEECCC
Confidence 3456799999998444466678899 999998 333 222 222211 2667899997
Q ss_pred CCceeeEeeEEEeCCCcEEEEcCC
Q 003822 759 SKSEIVKVNLLASTDHCDKECSHG 782 (793)
Q Consensus 759 ~~~~iv~~~ltaS~Dg~VkvW~~~ 782 (793)
+...++ .+..|+.|.+|+.+
T Consensus 288 g~~l~~----~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 288 GKYLIA----AGQKSHHISVYEIV 307 (343)
T ss_dssp SSEEEE----ECTTTCEEEEEEEE
T ss_pred CCEEEE----ecCCCCeEEEEEEc
Confidence 543333 33468999999654
No 131
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.87 E-value=2e-20 Score=224.07 Aligned_cols=283 Identities=12% Similarity=0.078 Sum_probs=206.8
Q ss_pred eEEEEEeCCCCCEEEEEeC-CC-----eEEEEECCCCeEEEEEeccCCC----------------------CCEEEEEEe
Q 003822 456 PRQFEYHPSISCLMVFGTL-DG-----EIVVVNHENENIVSYIPSFGAM----------------------NSVLGLCWL 507 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~-DG-----~I~VWd~~t~~~i~~l~~~~h~----------------------~~V~sv~fs 507 (793)
|++++|+| ++++|++++. || +|++||+.+++....+....+. ..|.+++|+
T Consensus 39 ~~~~~~Sp-dG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~S 117 (741)
T 2ecf_A 39 LMKPKVAP-DGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWS 117 (741)
T ss_dssp CEEEEECT-TSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEEC
T ss_pred CCCceEec-CCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEEC
Confidence 88999999 9999999998 88 8999999999887776543333 337889998
Q ss_pred eCCCCEEEEEEcCCcEEEEEcCCC---CCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcE
Q 003822 508 KKYPSKLIAGSDNGSLKLYDIRHM---PPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRR 584 (793)
Q Consensus 508 ~~~g~~Lasgs~DgtV~vWDl~~~---~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~ 584 (793)
++|++|++++. +.|.+||+.++ ... .+ ..+...+.+++|+|++..++.++ ++.|++||+.+++.
T Consensus 118 -pDg~~l~~~~~-~~i~~~d~~~~~~~~~~--~l--------~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~ 184 (741)
T 2ecf_A 118 -PDAQRLLFPLG-GELYLYDLKQEGKAAVR--QL--------THGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQ 184 (741)
T ss_dssp -TTSSEEEEEET-TEEEEEESSSCSTTSCC--BC--------CCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEE
T ss_pred -CCCCEEEEEeC-CcEEEEECCCCCcceEE--Ec--------ccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCE
Confidence 89999999887 89999999886 321 11 12335689999999998888776 56999999998877
Q ss_pred EEEEcccCCCC----------------eEEEEEcCCCCcEEEEEeCCC--------------------------------
Q 003822 585 LQVFADMHKEH----------------INVVKFSNHSPSIFATSSFDQ-------------------------------- 616 (793)
Q Consensus 585 l~~~~~gh~~~----------------V~sv~fspdg~~~LaTgs~Dg-------------------------------- 616 (793)
..... .+... +..++|+|+| +.|++++.|+
T Consensus 185 ~~~~~-~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg-~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~ 262 (741)
T 2ecf_A 185 MQLTA-DGSTTIGNGIAEFVADEEMDRHTGYWWAPDD-SAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQ 262 (741)
T ss_dssp EECCC-CCCSSEEESCCCHHHHHHSCCCCSEEECTTS-SCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCE
T ss_pred EEecc-CCccceeccccceeeeeccccccceEECCCC-CEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCe
Confidence 65544 23332 4789999999 7788877665
Q ss_pred -eEEEEECCC-CCccceEEccCCCCe-EEEEEecCCCEEEEEeC-----CCeEEEEEcCCCcEEEEEeeecCCCC-CcEE
Q 003822 617 -DVKLWDLRQ-KPIQPCYTASSSKGN-VMVCFSPDDHYLLVSAV-----DNEVRQLLAVDGRVHLNFGITATGSS-QNYT 687 (793)
Q Consensus 617 -~IrIWDlrt-~~~~~~~~l~~~~~~-vsv~fSpdg~~Lasgs~-----Dg~I~IwDl~tg~~~~~l~~~~~~~~-~v~s 687 (793)
.|++||+.+ ++...+.....+... ..++| |||++|++++. +..|++||+.+++....+........ .+..
T Consensus 263 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~ 341 (741)
T 2ecf_A 263 VKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNS 341 (741)
T ss_dssp EEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSC
T ss_pred eEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCc
Confidence 789999988 754332221123333 35999 99999998764 56899999999987666543221110 3347
Q ss_pred EEEeeCCCeEEEEEeCCCcEEEEEEcC-CCcEEEeeeecCCCCCccceeeeccCCccccCCccEEEE-EEcCCCCceeeE
Q 003822 688 RSYYLNGRDYIVSGSCDEHVVRICCAQ-TGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAA-YTRPSSKSEIVK 765 (793)
Q Consensus 688 ~afspdg~~~L~Sgs~Dg~II~IWDv~-tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sv-a~~P~~~~~iv~ 765 (793)
++|+|||+ ++++++.||.+ +||.+. +++ .. .+.++ ...|..+ .|+|++...++
T Consensus 342 ~~~spdg~-~~~~~~~~g~~-~l~~~~~~~~-~~--~l~~~-------------------~~~v~~~~~~s~dg~~l~~- 396 (741)
T 2ecf_A 342 LRFLDDGS-ILWSSERTGFQ-HLYRIDSKGK-AA--ALTHG-------------------NWSVDELLAVDEKAGLAYF- 396 (741)
T ss_dssp CEECTTSC-EEEEECTTSSC-EEEEECSSSC-EE--ESCCS-------------------SSCEEEEEEEETTTTEEEE-
T ss_pred eEECCCCe-EEEEecCCCcc-EEEEEcCCCC-ee--eeeec-------------------ceEEEeEeEEeCCCCEEEE-
Confidence 89999999 99999999988 888765 344 44 44433 2457776 59997654444
Q ss_pred eeEEEeCCC--cEEEEcCCC
Q 003822 766 VNLLASTDH--CDKECSHGQ 783 (793)
Q Consensus 766 ~~ltaS~Dg--~VkvW~~~~ 783 (793)
+++.++ .+++|..+.
T Consensus 397 ---~~~~~~~~~~~l~~~~~ 413 (741)
T 2ecf_A 397 ---RAGIESARESQIYAVPL 413 (741)
T ss_dssp ---EECSSCTTCBEEEEEET
T ss_pred ---EEeCCCCceEEEEEEEc
Confidence 666666 899998653
No 132
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.87 E-value=2.5e-19 Score=193.23 Aligned_cols=274 Identities=9% Similarity=0.022 Sum_probs=201.0
Q ss_pred eEEEEEeCCCCCEEEEEeC-------CCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEE-EEEcCCcEEEEE
Q 003822 456 PRQFEYHPSISCLMVFGTL-------DGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLI-AGSDNGSLKLYD 527 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~-------DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~La-sgs~DgtV~vWD 527 (793)
+..++|+| +++.+++++. ++.|.+||..+++.+..+.. ...+..++|+ ++++.++ ++..++.|.+||
T Consensus 43 ~~~~~~s~-dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~---~~~~~~~~~s-~dg~~l~v~~~~~~~v~~~d 117 (353)
T 3vgz_A 43 AYEMAYSQ-QENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN---DLKPFGATIN-NTTQTLWFGNTVNSAVTAID 117 (353)
T ss_dssp EEEEEEET-TTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE---SSCCCSEEEE-TTTTEEEEEETTTTEEEEEE
T ss_pred ccceEECC-CCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec---CCCcceEEEC-CCCCEEEEEecCCCEEEEEe
Confidence 78999999 8877777764 56899999999998888764 2346788887 6777554 455679999999
Q ss_pred cCCCCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEE--CCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCC
Q 003822 528 IRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASG--YSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHS 605 (793)
Q Consensus 528 l~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g--~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg 605 (793)
..+++....................+.+++|+|+++.+++++ .++.|.+||+.+++.+..+. .+...+..++|+|++
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~-~~~~~~~~~~~s~dg 196 (353)
T 3vgz_A 118 AKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQ-NTGKMSTGLALDSEG 196 (353)
T ss_dssp TTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEEC-CCCTTCCCCEEETTT
T ss_pred CCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEec-CCCCccceEEECCCC
Confidence 988764221111000000000111368899999999888776 37899999999999998887 366668899999999
Q ss_pred CcEEEEEeCCCeEEEEECCCCCccceEEccC--CC-CeEEEEEecCCCEEEEEeC-CCeEEEEEcCCCcEEEEEeeecCC
Q 003822 606 PSIFATSSFDQDVKLWDLRQKPIQPCYTASS--SK-GNVMVCFSPDDHYLLVSAV-DNEVRQLLAVDGRVHLNFGITATG 681 (793)
Q Consensus 606 ~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~--~~-~~vsv~fSpdg~~Lasgs~-Dg~I~IwDl~tg~~~~~l~~~~~~ 681 (793)
..+++++.++.|.+||+.+++......... +. .+..++|+|+|+++++++. ++.|.+||..+++.+..+...
T Consensus 197 -~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~--- 272 (353)
T 3vgz_A 197 -KRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAP--- 272 (353)
T ss_dssp -TEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECS---
T ss_pred -CEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcC---
Confidence 788888889999999999875444443311 22 3445999999998888775 489999999999988777632
Q ss_pred CCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCCCCccceeeeccCCccccCCccEEEEEEcCCCCc
Q 003822 682 SSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKS 761 (793)
Q Consensus 682 ~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~~~ 761 (793)
. ...++|+|+|+.++++...++.| .+||..+++.+. .+..+. .+.+++|+|++..
T Consensus 273 ~--~~~~~~s~dg~~l~v~~~~~~~v-~~~d~~~~~~~~--~~~~~~--------------------~~~~~~~s~dg~~ 327 (353)
T 3vgz_A 273 E--SLAVLFNPARNEAYVTHRQAGKV-SVIDAKSYKVVK--TFDTPT--------------------HPNSLALSADGKT 327 (353)
T ss_dssp S--CCCEEEETTTTEEEEEETTTTEE-EEEETTTTEEEE--EEECCS--------------------EEEEEEECTTSCE
T ss_pred C--CceEEECCCCCEEEEEECCCCeE-EEEECCCCeEEE--EEecCC--------------------CCCeEEEcCCCCE
Confidence 1 24689999999455555578888 999999999887 443322 4678999997654
Q ss_pred eee
Q 003822 762 EIV 764 (793)
Q Consensus 762 ~iv 764 (793)
.++
T Consensus 328 l~v 330 (353)
T 3vgz_A 328 LYV 330 (353)
T ss_dssp EEE
T ss_pred EEE
Confidence 333
No 133
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.86 E-value=1.6e-19 Score=202.55 Aligned_cols=244 Identities=12% Similarity=0.059 Sum_probs=182.5
Q ss_pred CCEEEEEeCC------CeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCC---cEEEEEcCCCCCccc
Q 003822 466 SCLMVFGTLD------GEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNG---SLKLYDIRHMPPSIR 536 (793)
Q Consensus 466 ~~~Lasgs~D------G~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~Dg---tV~vWDl~~~~~~~~ 536 (793)
+..++.++.+ ++|++||++.+. ...+. +|...|.+++|+ ++|+.|++++.++ .|++||+.+++..
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~~-~~~l~--~~~~~v~~~~~S-pdg~~la~~s~~~~~~~i~~~d~~tg~~~-- 216 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYDGYN-QFVVH--RSPQPLMSPAWS-PDGSKLAYVTFESGRSALVIQTLANGAVR-- 216 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETTSCS-CEEEE--EESSCEEEEEEC-TTSSEEEEEECTTSSCEEEEEETTTCCEE--
T ss_pred CCEEEEEEecCCCCccceEEEEcCCCCC-CEEEe--CCCCcceeeEEc-CCCCEEEEEEecCCCcEEEEEECCCCcEE--
Confidence 4566666554 799999998544 34444 678899999998 7999999999885 9999999986541
Q ss_pred ccccCCceeEecCCCCeEEEEEccCCCEEEEEE-CCC--cEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEe
Q 003822 537 GMHYGAGTVTFDEFDQLTSVHVNSMDELFLASG-YSK--NIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSS 613 (793)
Q Consensus 537 ~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g-~Dg--~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs 613 (793)
....+...+.+++|+|++..++.++ .++ .|++||+.+++. ..+. .|...+.+++|+|+| +.|++++
T Consensus 217 --------~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~-~~~~~~~~~~~spdg-~~l~~~s 285 (415)
T 2hqs_A 217 --------QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVT-DGRSNNTEPTWFPDS-QNLAFTS 285 (415)
T ss_dssp --------EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECC-CCSSCEEEEEECTTS-SEEEEEE
T ss_pred --------EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCc-CCCCcccceEECCCC-CEEEEEE
Confidence 1223446789999999999888554 454 499999998876 4555 588899999999999 6777766
Q ss_pred C-CC--eEEEEECCCCCccceEEccCCCC-eEEEEEecCCCEEEEEeCC---CeEEEEEcCCCcEEEEEeeecCCCCCcE
Q 003822 614 F-DQ--DVKLWDLRQKPIQPCYTASSSKG-NVMVCFSPDDHYLLVSAVD---NEVRQLLAVDGRVHLNFGITATGSSQNY 686 (793)
Q Consensus 614 ~-Dg--~IrIWDlrt~~~~~~~~l~~~~~-~vsv~fSpdg~~Lasgs~D---g~I~IwDl~tg~~~~~l~~~~~~~~~v~ 686 (793)
. ++ .|.+||+.+++.. .+..+.. ...++|+|+|++|++++.+ ..|++||+.+++.. .+. .+..+.
T Consensus 286 ~~~g~~~i~~~d~~~~~~~---~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~----~~~~~~ 357 (415)
T 2hqs_A 286 DQAGRPQVYKVNINGGAPQ---RITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLS----STFLDE 357 (415)
T ss_dssp CTTSSCEEEEEETTSSCCE---ECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECC----CSSSCE
T ss_pred CCCCCcEEEEEECCCCCEE---EEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-Eec----CCCCcC
Confidence 5 45 6888898886432 2223333 3469999999999998864 58999999998863 332 223788
Q ss_pred EEEEeeCCCeEEEEEeCCC---cEEEEEEcCCCcEEEeeeecCCCCCccceeeeccCCccccCCccEEEEEEcCC
Q 003822 687 TRSYYLNGRDYIVSGSCDE---HVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPS 758 (793)
Q Consensus 687 s~afspdg~~~L~Sgs~Dg---~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~ 758 (793)
.++|+|+|+ +|++++.++ .+ ++||+..+ .+. .+.+| .+.|.+++|+|.
T Consensus 358 ~~~~spdg~-~l~~~s~~~~~~~l-~~~d~~g~-~~~--~l~~~-------------------~~~v~~~~~~~~ 408 (415)
T 2hqs_A 358 TPSLAPNGT-MVIYSSSQGMGSVL-NLVSTDGR-FKA--RLPAT-------------------DGQVKFPAWSPY 408 (415)
T ss_dssp EEEECTTSS-EEEEEEEETTEEEE-EEEETTSC-CEE--ECCCS-------------------SSEEEEEEECCC
T ss_pred CeEEcCCCC-EEEEEEcCCCccEE-EEEECCCC-cEE--EeeCC-------------------CCCCcCCccccc
Confidence 999999999 777777776 67 99998744 444 44444 357999999996
No 134
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.86 E-value=1.6e-19 Score=209.87 Aligned_cols=299 Identities=8% Similarity=0.010 Sum_probs=213.4
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEEC--CCCeEEEEEeccCCCCCEEEEEEeeC----CCCEEEEEE-cCCcEEEEEc
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNH--ENENIVSYIPSFGAMNSVLGLCWLKK----YPSKLIAGS-DNGSLKLYDI 528 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~--~t~~~i~~l~~~~h~~~V~sv~fs~~----~g~~Lasgs-~DgtV~vWDl 528 (793)
+..++|+| ++++|++++.|++|.+||+ .+++.+..+. +...+..++|+ + +|+++++++ .+++|.+||.
T Consensus 181 ~~~v~~sp-dg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~---~g~~p~~va~s-p~~~~dg~~l~v~~~~~~~v~v~D~ 255 (543)
T 1nir_A 181 VHISRMSA-SGRYLLVIGRDARIDMIDLWAKEPTKVAEIK---IGIEARSVESS-KFKGYEDRYTIAGAYWPPQFAIMDG 255 (543)
T ss_dssp EEEEEECT-TSCEEEEEETTSEEEEEETTSSSCEEEEEEE---CCSEEEEEEEC-CSTTCTTTEEEEEEEESSEEEEEET
T ss_pred cceEEECC-CCCEEEEECCCCeEEEEECcCCCCcEEEEEe---cCCCcceEEeC-CCcCCCCCEEEEEEccCCeEEEEec
Confidence 78899999 9999999999999999999 8888888876 33568999997 6 899998887 5899999999
Q ss_pred CCCCCcccccccCC---ceeEecCCCCeEEEEEccCCCEEEEEE-CCCcEEEEECCCCcEEE--EEcccCCCCeEEEEEc
Q 003822 529 RHMPPSIRGMHYGA---GTVTFDEFDQLTSVHVNSMDELFLASG-YSKNIALYDINSGRRLQ--VFADMHKEHINVVKFS 602 (793)
Q Consensus 529 ~~~~~~~~~~~~~~---~~~~~~~~~~V~sv~~s~~~~~lla~g-~Dg~I~IWDl~tg~~l~--~~~~gh~~~V~sv~fs 602 (793)
.+.+.... +.... ....+.....+.++.++++++.++++. .++.|.+||..+++.+. .+. +...+..+.|+
T Consensus 256 ~t~~~~~~-i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~--~~~~~~~~~~s 332 (543)
T 1nir_A 256 ETLEPKQI-VSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG--AAPFLHDGGWD 332 (543)
T ss_dssp TTCCEEEE-EECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE--CCSSCCCEEEC
T ss_pred ccccccee-ecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEec--cCcCccCceEC
Confidence 88765221 11000 000122234689999999888877776 57999999999876544 443 66778899999
Q ss_pred CCCCcEEEEEeCCCeEEEEECCCCCccceEEcc--CCCC-eEEEEEecC-CCEEEEEe-CCCeEEEEEcCC-------Cc
Q 003822 603 NHSPSIFATSSFDQDVKLWDLRQKPIQPCYTAS--SSKG-NVMVCFSPD-DHYLLVSA-VDNEVRQLLAVD-------GR 670 (793)
Q Consensus 603 pdg~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~--~~~~-~vsv~fSpd-g~~Lasgs-~Dg~I~IwDl~t-------g~ 670 (793)
|+|..+++++..+++|.+||+.+++........ .|.+ ...+ ++|+ |..++++. .|++|.+||+.+ ++
T Consensus 333 pdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~ 411 (543)
T 1nir_A 333 SSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWK 411 (543)
T ss_dssp TTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTS
T ss_pred CCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCe
Confidence 999434555566899999999998554443321 1221 2222 5787 55566665 589999999998 88
Q ss_pred EEEEEeeecCCCCCcEEEEEeeCCCeEEEEEe-------CCCcEEEEEEcCCCcEEEeeeecCCCCCccceeeeccCCcc
Q 003822 671 VHLNFGITATGSSQNYTRSYYLNGRDYIVSGS-------CDEHVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPF 743 (793)
Q Consensus 671 ~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs-------~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~ 743 (793)
.+.++.. +...+..+.++|+|+ +|++++ .+++| .|||+.+++.... .+. +....+ +
T Consensus 412 ~v~~l~~---~g~~~~~v~~~pdg~-~l~v~~~~~~~~~~~~~v-~v~d~~~~~~~~~-~~~---------v~~~~~--~ 474 (543)
T 1nir_A 412 KVAELQG---QGGGSLFIKTHPKSS-HLYVDTTFNPDARISQSV-AVFDLKNLDAKYQ-VLP---------IAEWAD--L 474 (543)
T ss_dssp EEEEEEC---SCSCCCCEECCTTCC-EEEECCTTCSSHHHHTCE-EEEETTCTTSCCE-EEC---------HHHHHC--C
T ss_pred EEEEEEc---CCCCceEEEcCCCCC-cEEEecCCCCCcccCceE-EEEECCCCCCCeE-Eee---------chhhcc--c
Confidence 8888863 334567889999999 888876 26789 9999999987631 221 000000 1
Q ss_pred ccCCccEEEEEEcCCCCceeeEeeEEE----eCCCcEEEEcCCCC
Q 003822 744 RDFNMSILAAYTRPSSKSEIVKVNLLA----STDHCDKECSHGQH 784 (793)
Q Consensus 744 ~~h~~~V~sva~~P~~~~~iv~~~lta----S~Dg~VkvW~~~~~ 784 (793)
..+...|..++|+|++...++ +. +.|++|.||+....
T Consensus 475 ~~~~~~~~~~~~~~~g~~~~~----s~~~~~~~~~~i~v~D~~t~ 515 (543)
T 1nir_A 475 GEGAKRVVQPEYNKRGDEVWF----SVWNGKNDSSALVVVDDKTL 515 (543)
T ss_dssp CSSCCEEEEEEECSSSSEEEE----EEECCTTSCCEEEEEETTTT
T ss_pred CCCCCceEeccCCCCCCEEEE----EeecCCCCCCeEEEEECCCc
Confidence 122357999999997655444 32 24799999997654
No 135
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.83 E-value=4.8e-19 Score=189.11 Aligned_cols=272 Identities=9% Similarity=0.005 Sum_probs=194.2
Q ss_pred CEEEEEeCCCeEEEEECCCCeEEEEEeccCCCC-CEEEEEEeeCCCCEE-EEEEcCCcEEEEEcCCCCCcccccccCCce
Q 003822 467 CLMVFGTLDGEIVVVNHENENIVSYIPSFGAMN-SVLGLCWLKKYPSKL-IAGSDNGSLKLYDIRHMPPSIRGMHYGAGT 544 (793)
Q Consensus 467 ~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~-~V~sv~fs~~~g~~L-asgs~DgtV~vWDl~~~~~~~~~~~~~~~~ 544 (793)
+++++++.++.|.+||..+++.+..+.. ++.. .+..++|+ ++++.+ ++++.++.|.+||+.+++............
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~~~~s-~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~ 79 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITI-ADAGPTPMVPMVA-PGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEE 79 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEEC-TTCTTCCCCEEEC-TTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTE
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEc-CCCCCCccceEEc-CCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccc
Confidence 4789999999999999999998887764 2222 47788997 677665 555667899999998866421111000000
Q ss_pred eEecCCCCeEEEEEccCCCEEEEEE------------CCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEE
Q 003822 545 VTFDEFDQLTSVHVNSMDELFLASG------------YSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATS 612 (793)
Q Consensus 545 ~~~~~~~~V~sv~~s~~~~~lla~g------------~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTg 612 (793)
+...+.+++|+|++..++++. .++.|.+||+.+++.+..+. ....+.+++|+|++ ++++++
T Consensus 80 ----~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~--~~~~~~~~~~s~dg-~~l~~~ 152 (337)
T 1pby_B 80 ----RVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE--APRQITMLAWARDG-SKLYGL 152 (337)
T ss_dssp ----EEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEE--CCSSCCCEEECTTS-SCEEEE
T ss_pred ----ccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEe--CCCCcceeEECCCC-CEEEEe
Confidence 012467889999988888886 57999999999999888877 34567889999999 666666
Q ss_pred eCCCeEEEEECCCCCccceEEccCCCCeEEEEEecCCCEEEEEeCCC------------------------eEEEEEcCC
Q 003822 613 SFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLVSAVDN------------------------EVRQLLAVD 668 (793)
Q Consensus 613 s~Dg~IrIWDlrt~~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs~Dg------------------------~I~IwDl~t 668 (793)
++.|.+||+.+++............ .+.|+|+|+++++++..+ .|.+||+.+
T Consensus 153 --~~~i~~~d~~~~~~~~~~~~~~~~~--~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~ 228 (337)
T 1pby_B 153 --GRDLHVMDPEAGTLVEDKPIQSWEA--ETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLET 228 (337)
T ss_dssp --SSSEEEEETTTTEEEEEECSTTTTT--TTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTT
T ss_pred --CCeEEEEECCCCcEeeeeeccccCC--CceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCC
Confidence 6889999999874433222222112 247899998776655332 478999999
Q ss_pred CcEEEEEeeecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCCCCccceeeeccCCccccCCc
Q 003822 669 GRVHLNFGITATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNM 748 (793)
Q Consensus 669 g~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~ 748 (793)
++.. .+... .+...+..++|+|+|+ +++++ ++.+ ++||+.+++.+. .+..+.
T Consensus 229 ~~~~-~~~~~-~~~~~~~~~~~s~dg~-~l~~~--~~~v-~~~d~~~~~~~~--~~~~~~-------------------- 280 (337)
T 1pby_B 229 GEMA-MREVR-IMDVFYFSTAVNPAKT-RAFGA--YNVL-ESFDLEKNASIK--RVPLPH-------------------- 280 (337)
T ss_dssp CCEE-EEEEE-ECSSCEEEEEECTTSS-EEEEE--ESEE-EEEETTTTEEEE--EEECSS--------------------
T ss_pred CCce-EeecC-CCCCceeeEEECCCCC-EEEEe--CCeE-EEEECCCCcCcc--eecCCC--------------------
Confidence 9875 44332 2345677899999999 77776 6888 999999998887 443221
Q ss_pred cEEEEEEcCCCCceeeEeeEEEeCCCcEEEEcCCCC
Q 003822 749 SILAAYTRPSSKSEIVKVNLLASTDHCDKECSHGQH 784 (793)
Q Consensus 749 ~V~sva~~P~~~~~iv~~~ltaS~Dg~VkvW~~~~~ 784 (793)
.+.+++|+|++. .++ +++.++.|++|+....
T Consensus 281 ~~~~~~~s~dg~-~l~----~~~~~~~i~v~d~~~~ 311 (337)
T 1pby_B 281 SYYSVNVSTDGS-TVW----LGGALGDLAAYDAETL 311 (337)
T ss_dssp CCCEEEECTTSC-EEE----EESBSSEEEEEETTTC
T ss_pred ceeeEEECCCCC-EEE----EEcCCCcEEEEECcCC
Confidence 356789999754 344 5678999999998654
No 136
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.83 E-value=5.3e-19 Score=184.05 Aligned_cols=250 Identities=13% Similarity=0.058 Sum_probs=174.4
Q ss_pred EEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCC-CCCcccccccCCceeEecC
Q 003822 471 FGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRH-MPPSIRGMHYGAGTVTFDE 549 (793)
Q Consensus 471 sgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~-~~~~~~~~~~~~~~~~~~~ 549 (793)
.++.+++|++||+.+++..... .|...|.+++|+ +++++|++++ ++.|.+||+.+ ++..... . ..+
T Consensus 17 ~~~~~~~i~~~d~~~~~~~~~~---~~~~~v~~~~~s-pdg~~l~~~~-~~~i~~~d~~~~~~~~~~~-~-------~~~ 83 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMRVVW---QTPELFEAPNWS-PDGKYLLLNS-EGLLYRLSLAGDPSPEKVD-T-------GFA 83 (297)
T ss_dssp -CCCCEEEEEEETTTTEEEEEE---EESSCCEEEEEC-TTSSEEEEEE-TTEEEEEESSSCCSCEECC-C-------TTC
T ss_pred CCCcceeEEEEeCCCCceeeec---cCCcceEeeEEC-CCCCEEEEEc-CCeEEEEeCCCCCCceEec-c-------ccc
Confidence 3457899999999998876544 577899999998 7899999887 78999999988 6542111 1 011
Q ss_pred CCCeEEEEEccCCCEEEEEEC--CCcE--EEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEECCC
Q 003822 550 FDQLTSVHVNSMDELFLASGY--SKNI--ALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQ 625 (793)
Q Consensus 550 ~~~V~sv~~s~~~~~lla~g~--Dg~I--~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~Dg~IrIWDlrt 625 (793)
...+.+++|+|++..+++++. ++.. ..|++.+++ ...+. +...+..++|+|++..++++++.|+.+++|+++.
T Consensus 84 ~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~--~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~ 160 (297)
T 2ojh_A 84 TICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMT--KNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDI 160 (297)
T ss_dssp CCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECC--SSSSEEEEEECTTSSEEEEEEEETTEEEEEEEET
T ss_pred cccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEee--cCCCccceEECCCCCEEEEEECCCCceEEEEEEC
Confidence 256788999999999999883 3444 445555554 44454 3345899999999944444888899999999643
Q ss_pred CCccceEEccCCC-CeEEEEEecCCCEEEEEe-CCCeEEEEEcC-CCcEEEEEeeecCCCCCcEEEEEeeCCCeEEEEEe
Q 003822 626 KPIQPCYTASSSK-GNVMVCFSPDDHYLLVSA-VDNEVRQLLAV-DGRVHLNFGITATGSSQNYTRSYYLNGRDYIVSGS 702 (793)
Q Consensus 626 ~~~~~~~~l~~~~-~~vsv~fSpdg~~Lasgs-~Dg~I~IwDl~-tg~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs 702 (793)
.... ...+..+. .+..++|+|+|++|++++ .++.+++|++. .+.....+. .+...+..++|+|+|+ +|++++
T Consensus 161 ~~~~-~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~---~~~~~~~~~~~s~dg~-~l~~~~ 235 (297)
T 2ojh_A 161 DSGV-ETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERIT---DSAYGDWFPHPSPSGD-KVVFVS 235 (297)
T ss_dssp TTCC-EEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECC---CCSEEEEEEEECTTSS-EEEEEE
T ss_pred CCCc-ceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEe---cCCcccCCeEECCCCC-EEEEEE
Confidence 2212 23333333 445699999999988776 48899999876 444444443 3445677889999999 777776
Q ss_pred CC-----------CcEEEEEEcCCCcEEEeeeecCCCCCccceeeeccCCccccCCccEEEEEEcCCCCc
Q 003822 703 CD-----------EHVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKS 761 (793)
Q Consensus 703 ~D-----------g~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~~~ 761 (793)
.+ +.+ ++||+.+++......+.+|. ..+..++|+|++..
T Consensus 236 ~~~~~~~~~~~~~~~l-~~~d~~~~~~~~~~~~~~~~-------------------~~~~~~~~spdg~~ 285 (297)
T 2ojh_A 236 YDADVFDHPRDLDVRV-QLMDMDGGNVETLFDLFGGQ-------------------GTMNSPNWSPDGDE 285 (297)
T ss_dssp EETTCCSCCSSEEEEE-EEEETTSCSCEEEEEEEEST-------------------TTSCSCCBCTTSSE
T ss_pred cCCCCCcccccCceEE-EEEecCCCCceeeeccCCCC-------------------cccccceECCCCCE
Confidence 65 457 99999998765422333333 35667889997543
No 137
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.83 E-value=5.4e-18 Score=181.39 Aligned_cols=245 Identities=11% Similarity=0.164 Sum_probs=170.6
Q ss_pred eEEEEEeCCCCCEEEEEeCC-CeEEEEECC--CCeEE--EEEeccCCCCCEEEEEEeeCCCCEEEEEEc-CCcEEEEEcC
Q 003822 456 PRQFEYHPSISCLMVFGTLD-GEIVVVNHE--NENIV--SYIPSFGAMNSVLGLCWLKKYPSKLIAGSD-NGSLKLYDIR 529 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~D-G~I~VWd~~--t~~~i--~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~-DgtV~vWDl~ 529 (793)
+.+++|+| ++++|++++.+ +.|.+|++. +++.. ..+. .+ ..+..++|+ ++++++++++. ++.|.+||+.
T Consensus 40 ~~~~~~sp-dg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~s-~dg~~l~~~~~~~~~i~~~d~~ 114 (343)
T 1ri6_A 40 VQPMVVSP-DKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESA--LP-GSLTHISTD-HQGQFVFVGSYNAGNVSVTRLE 114 (343)
T ss_dssp CCCEEECT-TSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEE--CS-SCCSEEEEC-TTSSEEEEEETTTTEEEEEEEE
T ss_pred CceEEECC-CCCEEEEeecCCCeEEEEEecCCCCceeeccccc--cC-CCCcEEEEc-CCCCEEEEEecCCCeEEEEECC
Confidence 77899999 88888888876 999999997 55543 3343 23 378899997 78887776664 8899999995
Q ss_pred CCCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEE-CCCcEEEEECCC-CcEEE----EEcccCCCCeEEEEEcC
Q 003822 530 HMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASG-YSKNIALYDINS-GRRLQ----VFADMHKEHINVVKFSN 603 (793)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g-~Dg~I~IWDl~t-g~~l~----~~~~gh~~~V~sv~fsp 603 (793)
.+.. .. ..........+.+++|+|++..+++++ .++.|.+||+.+ ++... .+.......+..++|+|
T Consensus 115 ~~~~-~~------~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 187 (343)
T 1ri6_A 115 DGLP-VG------VVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHP 187 (343)
T ss_dssp TTEE-EE------EEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECT
T ss_pred CCcc-cc------ccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECC
Confidence 3211 00 011233345688999999999888888 789999999987 65432 22322445788999999
Q ss_pred CCCcEEEEEeCCCeEEEEECCC--CCccceEE---ccC----CCCeEEEEEecCCCEEEEEe-CCCeEEEEEcC--CCc-
Q 003822 604 HSPSIFATSSFDQDVKLWDLRQ--KPIQPCYT---ASS----SKGNVMVCFSPDDHYLLVSA-VDNEVRQLLAV--DGR- 670 (793)
Q Consensus 604 dg~~~LaTgs~Dg~IrIWDlrt--~~~~~~~~---l~~----~~~~vsv~fSpdg~~Lasgs-~Dg~I~IwDl~--tg~- 670 (793)
++..+++++..++.|.+||+.. +....... ... ...+..++|+|+|++|+++. .++.|.+||+. ++.
T Consensus 188 dg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~ 267 (343)
T 1ri6_A 188 NEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVL 267 (343)
T ss_dssp TSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCE
T ss_pred CCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCce
Confidence 9943445555899999999954 33221222 111 12334699999999888655 68999999998 333
Q ss_pred -EEEEEeeecCCCCCcEEEEEeeCCCeEEEEEe-CCCcEEEEEE--cCCCcE
Q 003822 671 -VHLNFGITATGSSQNYTRSYYLNGRDYIVSGS-CDEHVVRICC--AQTGRR 718 (793)
Q Consensus 671 -~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs-~Dg~II~IWD--v~tg~~ 718 (793)
.+..+. .+ ..+..++|+|+|+ +|++++ .++.+ .+|+ ..+|+.
T Consensus 268 ~~~~~~~---~~-~~~~~~~~s~dg~-~l~~~~~~~~~v-~v~~~d~~~g~~ 313 (343)
T 1ri6_A 268 SKEGFQP---TE-TQPRGFNVDHSGK-YLIAAGQKSHHI-SVYEIVGEQGLL 313 (343)
T ss_dssp EEEEEEE---CS-SSCCCEEECTTSS-EEEEECTTTCEE-EEEEEETTTTEE
T ss_pred EEeeeec---CC-CccceEEECCCCC-EEEEecCCCCeE-EEEEEcCCCcee
Confidence 333332 22 2377899999999 666666 67888 9995 446644
No 138
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.82 E-value=1.6e-18 Score=206.64 Aligned_cols=289 Identities=11% Similarity=0.097 Sum_probs=199.4
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCC-----
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRH----- 530 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~----- 530 (793)
|++++|+| + ..++.+. +++|++||+.+++..... .+...+.+++|+ ++|+.|+++ .|+.|++||+.+
T Consensus 84 v~~~~~sp-d-~~~~~~~-~~~i~~~d~~~~~~~~l~---~~~~~~~~~~~S-pdG~~la~~-~~~~i~v~~~~~~~~~~ 155 (706)
T 2z3z_A 84 SFRTLDAG-R-GLVVLFT-QGGLVGFDMLARKVTYLF---DTNEETASLDFS-PVGDRVAYV-RNHNLYIARGGKLGEGM 155 (706)
T ss_dssp CEEEEETT-T-TEEEEEE-TTEEEEEETTTTEEEEEE---CCTTCCTTCEEC-TTSSEEEEE-ETTEEEEEECBCTTSCC
T ss_pred ceeEEECC-C-CeEEEEE-CCEEEEEECCCCceEEcc---CCcccccCCcCC-CCCCEEEEE-ECCeEEEEecCcccccC
Confidence 89999999 6 5565554 599999999988765543 456678889998 799999885 679999999988
Q ss_pred CCCcccccccCCce-----eEecCCCCeEEEEEccCCCEEEEEE---------------------------------CCC
Q 003822 531 MPPSIRGMHYGAGT-----VTFDEFDQLTSVHVNSMDELFLASG---------------------------------YSK 572 (793)
Q Consensus 531 ~~~~~~~~~~~~~~-----~~~~~~~~V~sv~~s~~~~~lla~g---------------------------------~Dg 572 (793)
++............ +.-.+...+.++.|+|++..+++++ .+.
T Consensus 156 g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~ 235 (706)
T 2z3z_A 156 SRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHV 235 (706)
T ss_dssp CCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEE
T ss_pred CCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCee
Confidence 65422111111100 0001112358899999999999887 346
Q ss_pred cEEEEECCCCcEEEEEcc-cCCCCeEEEEEcCCCCcEEEEEeCCC-----eEEEEECCCC-CccceEEccCCCC---eEE
Q 003822 573 NIALYDINSGRRLQVFAD-MHKEHINVVKFSNHSPSIFATSSFDQ-----DVKLWDLRQK-PIQPCYTASSSKG---NVM 642 (793)
Q Consensus 573 ~I~IWDl~tg~~l~~~~~-gh~~~V~sv~fspdg~~~LaTgs~Dg-----~IrIWDlrt~-~~~~~~~l~~~~~---~vs 642 (793)
.|++||+.+++....... .|...+..++|+|+| +.+++++.++ .|++||+.++ ....+........ ...
T Consensus 236 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~ 314 (706)
T 2z3z_A 236 TVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDE-NILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHP 314 (706)
T ss_dssp EEEEEETTTTEEEECCCCSCTTCEEEEEEECTTS-SEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSC
T ss_pred EEEEEECCCCceEeeccCCCCceeEeeEEEECCC-CEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCC
Confidence 799999998886554432 467789999999999 7888877765 8999999987 3333332111111 124
Q ss_pred EEEec--CCCEEEEEeCCCeEEEEEcC-CCcEEEEEeeecCCCCCcEE-EEEeeCCCeEEEEEeCCC----cEEEEEEcC
Q 003822 643 VCFSP--DDHYLLVSAVDNEVRQLLAV-DGRVHLNFGITATGSSQNYT-RSYYLNGRDYIVSGSCDE----HVVRICCAQ 714 (793)
Q Consensus 643 v~fSp--dg~~Lasgs~Dg~I~IwDl~-tg~~~~~l~~~~~~~~~v~s-~afspdg~~~L~Sgs~Dg----~II~IWDv~ 714 (793)
++|+| +|+++++++.|+.+++|++. +++.+..+. .+...+.. ++|+|+|+.++++++.++ .+ +.||+.
T Consensus 315 ~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~---~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l-~~~d~~ 390 (706)
T 2z3z_A 315 LTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVT---KGEWEVTNFAGFDPKGTRLYFESTEASPLERHF-YCIDIK 390 (706)
T ss_dssp CEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECC---CSSSCEEEEEEECTTSSEEEEEESSSCTTCBEE-EEEETT
T ss_pred ceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecC---CCCeEEEeeeEEcCCCCEEEEEecCCCCceEEE-EEEEcC
Confidence 79999 99999999999999999876 566655553 33444555 799999994555565555 45 777877
Q ss_pred CCcEEEeeeecCCCCCccceeeeccCCccccCCccEEEEEEcCCCCceeeEeeEEEeCC---CcEEEEcCCCC
Q 003822 715 TGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKSEIVKVNLLASTD---HCDKECSHGQH 784 (793)
Q Consensus 715 tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~~~~iv~~~ltaS~D---g~VkvW~~~~~ 784 (793)
+++... +. +...+.+++|+|++...++ .++.+ +.|.+|+....
T Consensus 391 ~~~~~~---l~--------------------~~~~~~~~~~spdg~~l~~----~~~~~~~p~~i~l~d~~~~ 436 (706)
T 2z3z_A 391 GGKTKD---LT--------------------PESGMHRTQLSPDGSAIID----IFQSPTVPRKVTVTNIGKG 436 (706)
T ss_dssp CCCCEE---SC--------------------CSSSEEEEEECTTSSEEEE----EEECSSCSCEEEEEESSSC
T ss_pred CCCcee---cc--------------------CCCceEEEEECCCCCEEEE----EecCCCCCcEEEEEECCCC
Confidence 776332 21 1235788999997654433 44443 57999987543
No 139
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.82 E-value=2.2e-19 Score=214.26 Aligned_cols=285 Identities=11% Similarity=0.064 Sum_probs=195.2
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCC---CEEEEEEeeCCCCEEEEEEcC---------CcE
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMN---SVLGLCWLKKYPSKLIAGSDN---------GSL 523 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~---~V~sv~fs~~~g~~Lasgs~D---------gtV 523 (793)
+.+++|+| +++++++ +.||+|++||+.+++....+. +|.. .|.+++|+ ++|++|++++.+ +.|
T Consensus 19 ~~~~~~sp-dg~~~~~-~~dg~i~~~d~~~g~~~~~~~--~~~~~~~~v~~~~~S-pDg~~l~~~~~~~~~~~~~~~~~i 93 (723)
T 1xfd_A 19 DPEAKWIS-DTEFIYR-EQKGTVRLWNVETNTSTVLIE--GKKIESLRAIRYEIS-PDREYALFSYNVEPIYQHSYTGYY 93 (723)
T ss_dssp CCCCCBSS-SSCBCCC-CSSSCEEEBCGGGCCCEEEEC--TTTTTTTTCSEEEEC-TTSSEEEEEESCCCCSSSCCCSEE
T ss_pred ccccEEcC-CCcEEEE-eCCCCEEEEECCCCcEEEEec--cccccccccceEEEC-CCCCEEEEEecCccceeecceeeE
Confidence 56788999 8887766 789999999999998776665 4443 49999998 799999999875 778
Q ss_pred EEEEcCCCCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCCe-------
Q 003822 524 KLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHI------- 596 (793)
Q Consensus 524 ~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V------- 596 (793)
.+||+.+++.. .+.... .+...+..++|+|++..++.++. +.|++||+.+++...... .+...+
T Consensus 94 ~~~d~~~~~~~--~l~~~~-----~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~-~~~~~~~~~g~~~ 164 (723)
T 1xfd_A 94 VLSKIPHGDPQ--SLDPPE-----VSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVS-TGKEGVIYNGLSD 164 (723)
T ss_dssp EEEESSSCCCE--ECCCTT-----CCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEEC-CCBTTTEEEEECC
T ss_pred EEEECCCCceE--eccCCc-----cccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEec-CCCCCceECcccc
Confidence 89999987641 111000 12234778899999988888775 799999999988776665 233333
Q ss_pred -----------EEEEEcCCCCcEEEEEeCCC----------------------------------eEEEEECCCCCccce
Q 003822 597 -----------NVVKFSNHSPSIFATSSFDQ----------------------------------DVKLWDLRQKPIQPC 631 (793)
Q Consensus 597 -----------~sv~fspdg~~~LaTgs~Dg----------------------------------~IrIWDlrt~~~~~~ 631 (793)
.+++|+|+| +.|++++.|+ .|++||+.+++..
T Consensus 165 ~v~~ee~~~~~~~~~~SpDg-~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~-- 241 (723)
T 1xfd_A 165 WLYEEEILKTHIAHWWSPDG-TRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHD-- 241 (723)
T ss_dssp HHHHHTTSSSSEEEEECTTS-SEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCC--
T ss_pred eeEEEEeccCcceEEECCCC-CEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCcee--
Confidence 789999999 7888877543 7999999887532
Q ss_pred EEccCC------CC-eEEEEEecCCCEEEEEeC----CCeEEEEEcCCCcEEEEEeeecCCCCC--cEEEEEeeCCCeEE
Q 003822 632 YTASSS------KG-NVMVCFSPDDHYLLVSAV----DNEVRQLLAVDGRVHLNFGITATGSSQ--NYTRSYYLNGRDYI 698 (793)
Q Consensus 632 ~~l~~~------~~-~vsv~fSpdg~~Lasgs~----Dg~I~IwDl~tg~~~~~l~~~~~~~~~--v~s~afspdg~~~L 698 (793)
..+..+ .. +..++|||||+++++.+. +..|++||+.+++....+.....+... ....+|+|||+.++
T Consensus 242 ~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~ 321 (723)
T 1xfd_A 242 LEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFF 321 (723)
T ss_dssp EECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEE
T ss_pred EEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEE
Confidence 233322 22 335999999999877653 357999999999876655432111111 13679999999444
Q ss_pred EE-EeCCC------cEEEEEE-cCCCcE--EEeeeecCCCCCccceeeeccCCccccCCccEEE-EEEcCCCCceeeEee
Q 003822 699 VS-GSCDE------HVVRICC-AQTGRR--LRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILA-AYTRPSSKSEIVKVN 767 (793)
Q Consensus 699 ~S-gs~Dg------~II~IWD-v~tg~~--l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~s-va~~P~~~~~iv~~~ 767 (793)
+. +..++ .+ ++|| ..+++. .. .+..+ ...+.. ++|+|++...++
T Consensus 322 ~~~~~~~~~~~~~~~l-~~~d~~~~~~~~~~~--~l~~~-------------------~~~~~~~~~~spdg~~l~~--- 376 (723)
T 1xfd_A 322 FIRAIPQGGRGKFYHI-TVSSSQPNSSNDNIQ--SITSG-------------------DWDVTKILAYDEKGNKIYF--- 376 (723)
T ss_dssp EEEEECCSSSSCEEEE-EEECSSCCSSSCCCC--BSCCS-------------------SSCEEEEEEEETTTTEEEE---
T ss_pred EEEecccCCCcceeEE-EEEeccCCCCcccee--EeecC-------------------CeEEEeeeEEcCCCCEEEE---
Confidence 44 55666 45 6777 344431 33 22211 123444 689997654433
Q ss_pred EEEeCC--CcEEEEcCCC
Q 003822 768 LLASTD--HCDKECSHGQ 783 (793)
Q Consensus 768 ltaS~D--g~VkvW~~~~ 783 (793)
+++.+ +.+++|..+.
T Consensus 377 -~~~~~~~~~~~l~~~~~ 393 (723)
T 1xfd_A 377 -LSTEDLPRRRQLYSANT 393 (723)
T ss_dssp -EESSSCTTCCEEEEECS
T ss_pred -EEcCCCCcceEEEEEeC
Confidence 55555 8899999754
No 140
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.81 E-value=2.1e-18 Score=184.08 Aligned_cols=242 Identities=10% Similarity=0.043 Sum_probs=180.8
Q ss_pred eEEEEEeCCCCCEE-EEEeCCCeEEEEECCCCeEEEEEeccC---CCCCEEEEEEeeCCCCEEEEEE------------c
Q 003822 456 PRQFEYHPSISCLM-VFGTLDGEIVVVNHENENIVSYIPSFG---AMNSVLGLCWLKKYPSKLIAGS------------D 519 (793)
Q Consensus 456 V~~vafsP~d~~~L-asgs~DG~I~VWd~~t~~~i~~l~~~~---h~~~V~sv~fs~~~g~~Lasgs------------~ 519 (793)
+..++|+| +++.+ +++..++.|.+||+.+++.+..+.... |...+.+++|+ ++++++++++ .
T Consensus 36 ~~~~~~s~-dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~dg~~l~~~~~~~~~~~~~~~~~ 113 (337)
T 1pby_B 36 PMVPMVAP-GGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALS-PDGKTLAIYESPVRLELTHFEVQ 113 (337)
T ss_dssp CCCEEECT-TSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEEC-TTSSEEEEEEEEEEECSSCEEEC
T ss_pred ccceEEcC-CCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEEC-CCCCEEEEEeccccccccccccc
Confidence 66789999 77654 566678999999999999887776422 12256788997 7888888886 5
Q ss_pred CCcEEEEEcCCCCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcccC-CCCeEE
Q 003822 520 NGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMH-KEHINV 598 (793)
Q Consensus 520 DgtV~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh-~~~V~s 598 (793)
++.|.+||+.+++.. ..+.....+.+++|+|++..++++ ++.|.+||+.+++.+..+..++ ..+
T Consensus 114 ~~~i~v~d~~~~~~~----------~~~~~~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~--- 178 (337)
T 1pby_B 114 PTRVALYDAETLSRR----------KAFEAPRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWEAE--- 178 (337)
T ss_dssp CCEEEEEETTTTEEE----------EEEECCSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTTTT---
T ss_pred CceEEEEECCCCcEE----------EEEeCCCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeeccccCCC---
Confidence 799999999875431 112223457788999998888777 6899999999999888877322 133
Q ss_pred EEEcCCCCcEEEEEeCCC-----------------------eEEEEECCCCCccceEEccCC-CCeEEEEEecCCCEEEE
Q 003822 599 VKFSNHSPSIFATSSFDQ-----------------------DVKLWDLRQKPIQPCYTASSS-KGNVMVCFSPDDHYLLV 654 (793)
Q Consensus 599 v~fspdg~~~LaTgs~Dg-----------------------~IrIWDlrt~~~~~~~~l~~~-~~~vsv~fSpdg~~Las 654 (793)
+.|+|++..+++++..++ .|.+||+.+++.. ......+ ..+..++|+|+|+++++
T Consensus 179 ~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~~~~~~~~~~~~~~s~dg~~l~~ 257 (337)
T 1pby_B 179 TYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-MREVRIMDVFYFSTAVNPAKTRAFG 257 (337)
T ss_dssp TBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-EEEEEECSSCEEEEEECTTSSEEEE
T ss_pred ceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce-EeecCCCCCceeeEEECCCCCEEEE
Confidence 378999843433333333 4689999987654 3333333 34556999999999998
Q ss_pred EeCCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEEeee
Q 003822 655 SAVDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRLRDIS 723 (793)
Q Consensus 655 gs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~ 723 (793)
+ ++.|++||+.+++.+..+. ....+..++|+|+|+ +|++++.++.| ++||+.+++.+..+.
T Consensus 258 ~--~~~v~~~d~~~~~~~~~~~----~~~~~~~~~~s~dg~-~l~~~~~~~~i-~v~d~~~~~~~~~~~ 318 (337)
T 1pby_B 258 A--YNVLESFDLEKNASIKRVP----LPHSYYSVNVSTDGS-TVWLGGALGDL-AAYDAETLEKKGQVD 318 (337)
T ss_dssp E--ESEEEEEETTTTEEEEEEE----CSSCCCEEEECTTSC-EEEEESBSSEE-EEEETTTCCEEEEEE
T ss_pred e--CCeEEEEECCCCcCcceec----CCCceeeEEECCCCC-EEEEEcCCCcE-EEEECcCCcEEEEEE
Confidence 8 6899999999998877765 234577899999999 78888889999 999999999998333
No 141
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.81 E-value=7.2e-18 Score=180.75 Aligned_cols=245 Identities=9% Similarity=0.041 Sum_probs=171.6
Q ss_pred eEEEEEeCCCCCEEEEEeC-CCeEEEEECCCCeE-EEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCC---cEEEEEcCC
Q 003822 456 PRQFEYHPSISCLMVFGTL-DGEIVVVNHENENI-VSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNG---SLKLYDIRH 530 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~-DG~I~VWd~~t~~~-i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~Dg---tV~vWDl~~ 530 (793)
+ .++|+| +++++++++. ++.|.+||..+++. ...+. .+..+..+++|+ +++++++++..++ .|.+||+.+
T Consensus 43 ~-~~~~s~-dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~--~~~~~~~~~~~s-~dg~~l~~~~~~~~~~~i~v~d~~~ 117 (331)
T 3u4y_A 43 V-DTAITS-DCSNVVVTSDFCQTLVQIETQLEPPKVVAIQ--EGQSSMADVDIT-PDDQFAVTVTGLNHPFNMQSYSFLK 117 (331)
T ss_dssp E-EEEECS-SSCEEEEEESTTCEEEEEECSSSSCEEEEEE--ECSSCCCCEEEC-TTSSEEEECCCSSSSCEEEEEETTT
T ss_pred c-eEEEcC-CCCEEEEEeCCCCeEEEEECCCCceeEEecc--cCCCCccceEEC-CCCCEEEEecCCCCcccEEEEECCC
Confidence 5 899999 7876665554 89999999999887 55554 444555558997 7899888555553 899999987
Q ss_pred CCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEE-CCCc-EEEEECCCCcEE-----EEEcccCCCCeEEEEEcC
Q 003822 531 MPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASG-YSKN-IALYDINSGRRL-----QVFADMHKEHINVVKFSN 603 (793)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g-~Dg~-I~IWDl~tg~~l-----~~~~~gh~~~V~sv~fsp 603 (793)
++.. ..+.....+.+++|+|++..+++++ .++. |.+|++.....+ ..+. ....+..++|+|
T Consensus 118 ~~~~----------~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~--~~~~~~~~~~sp 185 (331)
T 3u4y_A 118 NKFI----------STIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFIS--GGTRPFNITFTP 185 (331)
T ss_dssp TEEE----------EEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEEC--SSSSEEEEEECT
T ss_pred CCeE----------EEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCcccc--CCCCccceEECC
Confidence 6541 1223335578999999998776665 5688 999999864332 2222 455689999999
Q ss_pred CCCcEEEEEeCCCeEEEEECCCCCc-cceEEccCCCCeEEEEEecCCCEEEEEe-CCCeEEEEEcCCCcE--EEEEeee-
Q 003822 604 HSPSIFATSSFDQDVKLWDLRQKPI-QPCYTASSSKGNVMVCFSPDDHYLLVSA-VDNEVRQLLAVDGRV--HLNFGIT- 678 (793)
Q Consensus 604 dg~~~LaTgs~Dg~IrIWDlrt~~~-~~~~~l~~~~~~vsv~fSpdg~~Lasgs-~Dg~I~IwDl~tg~~--~~~l~~~- 678 (793)
+|..+++++..++.|++||+.+++. ..+..+.....+..++|+|+|+++++++ .++.|.+||+.+++. +..+...
T Consensus 186 dg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~ 265 (331)
T 3u4y_A 186 DGNFAFVANLIGNSIGILETQNPENITLLNAVGTNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGL 265 (331)
T ss_dssp TSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCC
T ss_pred CCCEEEEEeCCCCeEEEEECCCCcccceeeeccCCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeeccccccc
Confidence 9943556666789999999998754 1144444555555799999999887765 477899999999887 3333211
Q ss_pred ---cCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcE
Q 003822 679 ---ATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRR 718 (793)
Q Consensus 679 ---~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~ 718 (793)
.........++|+|+|+.+++++..++.+ .+||+.+...
T Consensus 266 ~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v-~v~d~~~~~~ 307 (331)
T 3u4y_A 266 LIDPRPLFGANQMALNKTETKLFISANISREL-KVFTISGKVV 307 (331)
T ss_dssp CCCCGGGTTCCCEEECTTSSEEEEEETTTTEE-EEEETTSCEE
T ss_pred ccCCCCcccccceEECCCCCEEEEecCCCCcE-EEEEecCCcc
Confidence 00011123479999999334455555677 9999976543
No 142
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.80 E-value=6.3e-18 Score=181.59 Aligned_cols=248 Identities=9% Similarity=0.067 Sum_probs=177.6
Q ss_pred EEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEE-EEEcCCcEEEEEcCCCCCccc
Q 003822 458 QFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLI-AGSDNGSLKLYDIRHMPPSIR 536 (793)
Q Consensus 458 ~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~La-sgs~DgtV~vWDl~~~~~~~~ 536 (793)
.+++++ ++.++++++.+++|.+||..+++.+..+.. +....+..++|+ ++++.++ ++..++.|.+||+.+++....
T Consensus 4 g~~~~~-~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~~~s-~dg~~~~v~~~~~~~i~~~d~~t~~~~~~ 80 (349)
T 1jmx_B 4 GPALKA-GHEYMIVTNYPNNLHVVDVASDTVYKSCVM-PDKFGPGTAMMA-PDNRTAYVLNNHYGDIYGIDLDTCKNTFH 80 (349)
T ss_dssp CCCCCT-TCEEEEEEETTTEEEEEETTTTEEEEEEEC-SSCCSSCEEEEC-TTSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred cccccC-CCEEEEEeCCCCeEEEEECCCCcEEEEEec-CCCCCCceeEEC-CCCCEEEEEeCCCCcEEEEeCCCCcEEEE
Confidence 345677 788999999999999999999998888764 222257788997 7787654 555789999999987654211
Q ss_pred ccccCCceeEecCCCCeEEEEEccCCCEEEEEECC------------CcEEEEECCCCc---EEEEEcccCCCCeEEEEE
Q 003822 537 GMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYS------------KNIALYDINSGR---RLQVFADMHKEHINVVKF 601 (793)
Q Consensus 537 ~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~D------------g~I~IWDl~tg~---~l~~~~~gh~~~V~sv~f 601 (793)
......... ....+.+++|+|++..+++++.+ +.|.+||+.+++ .+..+. +...+.+++|
T Consensus 81 ~~~~~~~~~---~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~--~~~~~~~~~~ 155 (349)
T 1jmx_B 81 ANLSSVPGE---VGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP--MPRQVYLMRA 155 (349)
T ss_dssp EESCCSTTE---EEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE--CCSSCCCEEE
T ss_pred EEccccccc---ccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc--CCCcccceeE
Confidence 110000000 01236788999999999888855 899999999854 334444 4456889999
Q ss_pred cCCCCcEEEEEeCCCeEEEEECCCCCccceEEccC---------------------------------------------
Q 003822 602 SNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASS--------------------------------------------- 636 (793)
Q Consensus 602 spdg~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~--------------------------------------------- 636 (793)
+|+| ++ ++++ +.|.+||+.+++.........
T Consensus 156 s~dg-~l-~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 231 (349)
T 1jmx_B 156 ADDG-SL-YVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADL 231 (349)
T ss_dssp CTTS-CE-EEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEE
T ss_pred CCCC-cE-EEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCcccccc
Confidence 9999 54 4444 349999998875433222111
Q ss_pred ----------------------CCCeEEEEEec-CCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeC
Q 003822 637 ----------------------SKGNVMVCFSP-DDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLN 693 (793)
Q Consensus 637 ----------------------~~~~vsv~fSp-dg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspd 693 (793)
...+..++|+| +|++++++ ++.|.+||+.+++.+..+.. ...+..++|+|+
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~----~~~~~~~~~s~d 305 (349)
T 1jmx_B 232 LYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANL----DHTYYCVAFDKK 305 (349)
T ss_dssp EEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEEC----SSCCCEEEECSS
T ss_pred ceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcC----CCCccceEECCC
Confidence 00123467789 99999988 88999999999998777752 334678999999
Q ss_pred CCeEEEEEeCCCcEEEEEEcCCCcEEEeeeec
Q 003822 694 GRDYIVSGSCDEHVVRICCAQTGRRLRDISLE 725 (793)
Q Consensus 694 g~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~ 725 (793)
|+ +|++++.++.| ++||+.+++.+..+.+.
T Consensus 306 g~-~l~~~~~~~~v-~v~d~~~~~~~~~~~~~ 335 (349)
T 1jmx_B 306 GD-KLYLGGTFNDL-AVFNPDTLEKVKNIKLP 335 (349)
T ss_dssp SS-CEEEESBSSEE-EEEETTTTEEEEEEECS
T ss_pred CC-EEEEecCCCeE-EEEeccccceeeeeecC
Confidence 98 66777888899 99999999999844443
No 143
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.80 E-value=9.7e-18 Score=181.61 Aligned_cols=260 Identities=10% Similarity=0.098 Sum_probs=168.3
Q ss_pred eEEEEEeCCCCCEEEEEeC--CCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEE-cCCcEEEEEcCCC-
Q 003822 456 PRQFEYHPSISCLMVFGTL--DGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGS-DNGSLKLYDIRHM- 531 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~--DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs-~DgtV~vWDl~~~- 531 (793)
+..++|+| ++++++++.. ++.|.+|++.+++.........+...+..++|+ +++++|++++ .+++|.+|++...
T Consensus 42 p~~~a~sp-dg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~s-pdg~~l~~~~~~~~~v~v~~~~~~g 119 (347)
T 3hfq_A 42 PTYLALSA-KDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVD-EARQLVYSANYHKGTAEVMKIAADG 119 (347)
T ss_dssp CCCEEECT-TCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEE-TTTTEEEEEETTTTEEEEEEECTTS
T ss_pred cceEEEcc-CCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEEC-CCCCEEEEEeCCCCEEEEEEeCCCC
Confidence 67799999 7774444432 689999999877643222222456678899997 7899888887 7899999999642
Q ss_pred CCcc-cccccC-CceeEecCCCCeEEEEEccCCCEEEEEE-CCCcEEEEECC-CCcEEE--EEcccCCCCeEEEEEcCCC
Q 003822 532 PPSI-RGMHYG-AGTVTFDEFDQLTSVHVNSMDELFLASG-YSKNIALYDIN-SGRRLQ--VFADMHKEHINVVKFSNHS 605 (793)
Q Consensus 532 ~~~~-~~~~~~-~~~~~~~~~~~V~sv~~s~~~~~lla~g-~Dg~I~IWDl~-tg~~l~--~~~~gh~~~V~sv~fspdg 605 (793)
.... ...... ...........+.+++|+|++. +++++ .++.|.+||+. +++... .+.......+..++|+|+|
T Consensus 120 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg 198 (347)
T 3hfq_A 120 ALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDG 198 (347)
T ss_dssp CEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTS
T ss_pred CeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCC
Confidence 2111 100000 0000001123488999999988 55555 57899999998 554332 2231233467889999999
Q ss_pred CcEEEEEeCCCeEEEEECCC--CCccceEEccCC-------CCeEEEEEecCCCEEEE-EeCCCeEEEEEcCCCcEEEEE
Q 003822 606 PSIFATSSFDQDVKLWDLRQ--KPIQPCYTASSS-------KGNVMVCFSPDDHYLLV-SAVDNEVRQLLAVDGRVHLNF 675 (793)
Q Consensus 606 ~~~LaTgs~Dg~IrIWDlrt--~~~~~~~~l~~~-------~~~vsv~fSpdg~~Las-gs~Dg~I~IwDl~tg~~~~~l 675 (793)
..+++++..++.|.+|++.. +........... ..+..++|+|||++|++ ...++.|.+|++........+
T Consensus 199 ~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~ 278 (347)
T 3hfq_A 199 QYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLI 278 (347)
T ss_dssp SEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEE
T ss_pred CEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEe
Confidence 43555567789999999875 332222222211 23456999999998855 456899999998732111222
Q ss_pred eeecCCCCCcEEEEEeeCCCeEEEEEeCC-CcEEEEE--EcCCCcEEE
Q 003822 676 GITATGSSQNYTRSYYLNGRDYIVSGSCD-EHVVRIC--CAQTGRRLR 720 (793)
Q Consensus 676 ~~~~~~~~~v~s~afspdg~~~L~Sgs~D-g~II~IW--Dv~tg~~l~ 720 (793)
.....+...+..++|+|+|+ +|++++.+ +.+ .+| |..+|+...
T Consensus 279 ~~~~~~~~~~~~~~~spdg~-~l~v~~~~~~~v-~v~~~d~~tg~l~~ 324 (347)
T 3hfq_A 279 QQISTEGDFPRDFDLDPTEA-FVVVVNQNTDNA-TLYARDLTSGKLSL 324 (347)
T ss_dssp EEEECSSSCCCEEEECTTSS-EEEEEETTTTEE-EEEEECTTTCCEEE
T ss_pred EEEecCCCCcCeEEECCCCC-EEEEEEcCCCcE-EEEEEeCCCCeEEe
Confidence 22223345678899999999 77766654 777 999 666777664
No 144
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.79 E-value=4.6e-18 Score=203.60 Aligned_cols=286 Identities=10% Similarity=-0.001 Sum_probs=197.0
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCC---eEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCC
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENE---NIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMP 532 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~---~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~ 532 (793)
+.+++|+| ++++|++++. +.|++||+.++ +.. .+ ..|...+..++|+ ++|++|++++. +.|.+||+.+++
T Consensus 111 v~~~~~Sp-Dg~~l~~~~~-~~i~~~d~~~~~~~~~~-~l--~~~~~~~~~~~~S-PDG~~la~~~~-~~i~~~d~~~g~ 183 (741)
T 2ecf_A 111 IVDYQWSP-DAQRLLFPLG-GELYLYDLKQEGKAAVR-QL--THGEGFATDAKLS-PKGGFVSFIRG-RNLWVIDLASGR 183 (741)
T ss_dssp SCCCEECT-TSSEEEEEET-TEEEEEESSSCSTTSCC-BC--CCSSSCEEEEEEC-TTSSEEEEEET-TEEEEEETTTTE
T ss_pred cceeEECC-CCCEEEEEeC-CcEEEEECCCCCcceEE-Ec--ccCCcccccccCC-CCCCEEEEEeC-CcEEEEecCCCC
Confidence 67789999 9999999986 99999999987 433 23 3677889999998 79999999874 699999998765
Q ss_pred CcccccccCCceeEec--------CCCCeEEEEEccCCCEEEEEECCC--------------------------------
Q 003822 533 PSIRGMHYGAGTVTFD--------EFDQLTSVHVNSMDELFLASGYSK-------------------------------- 572 (793)
Q Consensus 533 ~~~~~~~~~~~~~~~~--------~~~~V~sv~~s~~~~~lla~g~Dg-------------------------------- 572 (793)
....... ....+... ....+.++.|+|++..+++++.|+
T Consensus 184 ~~~~~~~-~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~ 262 (741)
T 2ecf_A 184 QMQLTAD-GSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQ 262 (741)
T ss_dssp EEECCCC-CCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCE
T ss_pred EEEeccC-CccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCe
Confidence 4211111 11101000 012257899999999999887654
Q ss_pred -cEEEEECCC-CcEEEEEcc-cCCCCeEEEEEcCCCCcEEEEEeC-----CCeEEEEECCCCCccceEEccCCC---CeE
Q 003822 573 -NIALYDINS-GRRLQVFAD-MHKEHINVVKFSNHSPSIFATSSF-----DQDVKLWDLRQKPIQPCYTASSSK---GNV 641 (793)
Q Consensus 573 -~I~IWDl~t-g~~l~~~~~-gh~~~V~sv~fspdg~~~LaTgs~-----Dg~IrIWDlrt~~~~~~~~l~~~~---~~v 641 (793)
.|++||+.+ ++....... .|...+..++| |+| +.|++++. +..|++||+.+++...+....... ...
T Consensus 263 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg-~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~ 340 (741)
T 2ecf_A 263 VKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDP-QHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHN 340 (741)
T ss_dssp EEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EET-TEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCS
T ss_pred eEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCC-CEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCC
Confidence 789999998 876554432 37788999999 999 66765543 567999999998655544432211 112
Q ss_pred EEEEecCCCEEEEEeCCCeEEEEEcC-CCcEEEEEeeecCCCCCcEEE-EEeeCCCeEEEEEeCCC--cEEEEEEcCC-C
Q 003822 642 MVCFSPDDHYLLVSAVDNEVRQLLAV-DGRVHLNFGITATGSSQNYTR-SYYLNGRDYIVSGSCDE--HVVRICCAQT-G 716 (793)
Q Consensus 642 sv~fSpdg~~Lasgs~Dg~I~IwDl~-tg~~~~~l~~~~~~~~~v~s~-afspdg~~~L~Sgs~Dg--~II~IWDv~t-g 716 (793)
.++|+|||+++++++.||.+++|.+. +++ ...+. .+...+..+ .|+|+|+.++++++.++ .+ +||++.. |
T Consensus 341 ~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~---~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~-~l~~~~~~g 415 (741)
T 2ecf_A 341 SLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALT---HGNWSVDELLAVDEKAGLAYFRAGIESARES-QIYAVPLQG 415 (741)
T ss_dssp CCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESC---CSSSCEEEEEEEETTTTEEEEEECSSCTTCB-EEEEEETTC
T ss_pred ceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeee---ecceEEEeEeEEeCCCCEEEEEEeCCCCceE-EEEEEEcCC
Confidence 58999999999999999988888765 344 44442 344556666 59999984556666666 78 9999864 4
Q ss_pred cEEEeeeecCCCCCccceeeeccCCccccCCccEEEEEEcCCCCceeeEeeEEEeCC---CcEEEEcCC
Q 003822 717 RRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKSEIVKVNLLASTD---HCDKECSHG 782 (793)
Q Consensus 717 ~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~~~~iv~~~ltaS~D---g~VkvW~~~ 782 (793)
..+. .+.+ ...+..++|+|++...++ .++.. +.+.+|+..
T Consensus 416 ~~~~--~l~~--------------------~~~~~~~~~spdg~~l~~----~~~~~~~p~~~~l~~~~ 458 (741)
T 2ecf_A 416 GQPQ--RLSK--------------------APGMHSASFARNASVYVD----SWSNNSTPPQIELFRAN 458 (741)
T ss_dssp CCCE--ECCC--------------------SCSEEEEEECTTSSEEEE----EEEETTEEEEEEEEETT
T ss_pred CCee--eccc--------------------CCCceEEEECCCCCEEEE----EecCCCCCCeEEEEEcC
Confidence 4344 3322 124778999997655444 33332 456666643
No 145
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.79 E-value=9.9e-18 Score=199.69 Aligned_cols=276 Identities=16% Similarity=0.114 Sum_probs=184.8
Q ss_pred EEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEE-EEEeccCCC-----------------CCEEEEEEeeCCCCEEEEEE
Q 003822 457 RQFEYHPSISCLMVFGTLDGEIVVVNHENENIV-SYIPSFGAM-----------------NSVLGLCWLKKYPSKLIAGS 518 (793)
Q Consensus 457 ~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i-~~l~~~~h~-----------------~~V~sv~fs~~~g~~Lasgs 518 (793)
..+.|. ++.+++++.+| | +||+.+++.+ ..+. .|. ..|.+++|+ ++ ..++.+.
T Consensus 29 ~~~~w~---g~~~~~~~~~~-i-~~d~~tg~~~~~~l~--~~~~~~~~l~~~~~~~~~~~~~v~~~~~s-pd-~~~~~~~ 99 (706)
T 2z3z_A 29 VGLQWM---GDNYVFIEGDD-L-VFNKANGKSAQTTRF--SAADLNALMPEGCKFQTTDAFPSFRTLDA-GR-GLVVLFT 99 (706)
T ss_dssp TTCEEE---TTEEEEEETTE-E-EEEC-------CEEE--EHHHHHTTC-----------CCCEEEEET-TT-TEEEEEE
T ss_pred CCCcCc---CCeEEEEeCCc-E-EEECCCCcEeeEEee--chhHhhhhccchhccccccccCceeEEEC-CC-CeEEEEE
Confidence 346777 45677777788 8 9999998873 3332 221 469999998 56 5655553
Q ss_pred cCCcEEEEEcCCCCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCC-----CcEEEEEcccCC
Q 003822 519 DNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINS-----GRRLQVFADMHK 593 (793)
Q Consensus 519 ~DgtV~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~t-----g~~l~~~~~gh~ 593 (793)
+++|++||+.+++.. ....+...+.+++|+|++..++++ .++.|++||+.+ ++....... +.
T Consensus 100 -~~~i~~~d~~~~~~~----------~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~-~~ 166 (706)
T 2z3z_A 100 -QGGLVGFDMLARKVT----------YLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTID-GT 166 (706)
T ss_dssp -TTEEEEEETTTTEEE----------EEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSC-CB
T ss_pred -CCEEEEEECCCCceE----------EccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccC-CC
Confidence 599999999875431 112233557888999998888874 689999999998 776654442 33
Q ss_pred CC--------------eEEEEEcCCCCcEEEEEe---------------------------------CCCeEEEEECCCC
Q 003822 594 EH--------------INVVKFSNHSPSIFATSS---------------------------------FDQDVKLWDLRQK 626 (793)
Q Consensus 594 ~~--------------V~sv~fspdg~~~LaTgs---------------------------------~Dg~IrIWDlrt~ 626 (793)
.. +.++.|+|+| ++|++++ .+..|++||+.++
T Consensus 167 ~~~~~g~~~~~ee~~~~~~~~~SpDg-~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~ 245 (706)
T 2z3z_A 167 ETLVYGQAVHQREFGIEKGTFWSPKG-SCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATG 245 (706)
T ss_dssp TTEEESSCCGGGCTTCCCSEEECTTS-SEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTT
T ss_pred CCeEcccchhhhhcCCCceEEECCCC-CEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCC
Confidence 32 4789999999 7888877 4467999999887
Q ss_pred CccceEEccCCCC-eEEEEEecCCCEEEEEeCCC-----eEEEEEcCCCcEEEEEeeecCCC--CCcEEEEEee--CCCe
Q 003822 627 PIQPCYTASSSKG-NVMVCFSPDDHYLLVSAVDN-----EVRQLLAVDGRVHLNFGITATGS--SQNYTRSYYL--NGRD 696 (793)
Q Consensus 627 ~~~~~~~l~~~~~-~vsv~fSpdg~~Lasgs~Dg-----~I~IwDl~tg~~~~~l~~~~~~~--~~v~s~afsp--dg~~ 696 (793)
+...+.....+.. +..++|+|||++|++++.++ .|++||+.+++....+....... ..+..++|+| +|+
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~- 324 (706)
T 2z3z_A 246 KTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQ- 324 (706)
T ss_dssp EEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSE-
T ss_pred ceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCE-
Confidence 5333322223333 34699999999999988775 89999999994333332111111 1234679999 998
Q ss_pred EEEEEeCCCcEEEEEEcC-CCcEEEeeeecCCCCCccceeeeccCCccccCCccEEE-EEEcCCCCceeeEeeEEEeCCC
Q 003822 697 YIVSGSCDEHVVRICCAQ-TGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILA-AYTRPSSKSEIVKVNLLASTDH 774 (793)
Q Consensus 697 ~L~Sgs~Dg~II~IWDv~-tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~s-va~~P~~~~~iv~~~ltaS~Dg 774 (793)
++++++.|+.+ +||.+. +++.+. .+.++. ..|.. ++|+|++...++ +++.++
T Consensus 325 ~l~~~~~~g~~-~l~~~~~~~~~~~--~l~~~~-------------------~~v~~~~~~spdg~~l~~----~~~~~~ 378 (706)
T 2z3z_A 325 FIWQSRRDGWN-HLYLYDTTGRLIR--QVTKGE-------------------WEVTNFAGFDPKGTRLYF----ESTEAS 378 (706)
T ss_dssp EEEEECTTSSC-EEEEEETTSCEEE--ECCCSS-------------------SCEEEEEEECTTSSEEEE----EESSSC
T ss_pred EEEEEccCCcc-EEEEEECCCCEEE--ecCCCC-------------------eEEEeeeEEcCCCCEEEE----EecCCC
Confidence 89999999998 999886 666666 444332 35665 799997654444 555555
Q ss_pred ----cEEEEcCC
Q 003822 775 ----CDKECSHG 782 (793)
Q Consensus 775 ----~VkvW~~~ 782 (793)
.|..|+..
T Consensus 379 ~~~~~l~~~d~~ 390 (706)
T 2z3z_A 379 PLERHFYCIDIK 390 (706)
T ss_dssp TTCBEEEEEETT
T ss_pred CceEEEEEEEcC
Confidence 45555543
No 146
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.78 E-value=1e-16 Score=173.57 Aligned_cols=272 Identities=11% Similarity=0.100 Sum_probs=175.9
Q ss_pred CCeEEEEEC--CCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEc---CCcEEEEEcCCCCCcccccccCCceeEecC
Q 003822 475 DGEIVVVNH--ENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSD---NGSLKLYDIRHMPPSIRGMHYGAGTVTFDE 549 (793)
Q Consensus 475 DG~I~VWd~--~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~---DgtV~vWDl~~~~~~~~~~~~~~~~~~~~~ 549 (793)
++.|.+|.+ .+++.... ....+...+..++|+ ++++ +++++. ++.|.+||+.++...... ....+
T Consensus 15 ~~~i~v~~~d~~tg~~~~~-~~~~~~~~p~~~a~s-pdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~-------~~~~~ 84 (347)
T 3hfq_A 15 SQGIYQGTLDTTAKTLTND-GLLAATQNPTYLALS-AKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLN-------TVVAP 84 (347)
T ss_dssp CCEEEEEEEETTTTEEEEE-EEEEECSCCCCEEEC-TTCE-EEEEEEETTEEEEEEEEEETTEEEEEE-------EEEEE
T ss_pred CCCEEEEEEcCCCCeEEEe-eeeeccCCcceEEEc-cCCe-EEEEEecCCCceEEEEEecCCcEEEee-------eeecC
Confidence 456777765 45655432 112445667889998 6887 555544 689999999765431110 01123
Q ss_pred CCCeEEEEEccCCCEEEEEE-CCCcEEEEECCC-C--cEEEEEcc-c-------CCCCeEEEEEcCCCCcEEEEEeCCCe
Q 003822 550 FDQLTSVHVNSMDELFLASG-YSKNIALYDINS-G--RRLQVFAD-M-------HKEHINVVKFSNHSPSIFATSSFDQD 617 (793)
Q Consensus 550 ~~~V~sv~~s~~~~~lla~g-~Dg~I~IWDl~t-g--~~l~~~~~-g-------h~~~V~sv~fspdg~~~LaTgs~Dg~ 617 (793)
...+..++|+|++..+++++ .++.|.+||+.. + +.+..+.. + +...+.+++|+|+| ++++++..++.
T Consensus 85 ~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg-~l~v~~~~~~~ 163 (347)
T 3hfq_A 85 GTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDN-RLAVIDLGSDK 163 (347)
T ss_dssp SCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTS-CEEEEETTTTE
T ss_pred CCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCC-cEEEEeCCCCE
Confidence 35678999999999998888 579999999963 3 33333331 1 12348899999999 57777777899
Q ss_pred EEEEECC-CCCccceE--EccCCCCeEEEEEecCCCEEEEE-eCCCeEEEEEcCC--CcEEE--EEeeecCC---CCCcE
Q 003822 618 VKLWDLR-QKPIQPCY--TASSSKGNVMVCFSPDDHYLLVS-AVDNEVRQLLAVD--GRVHL--NFGITATG---SSQNY 686 (793)
Q Consensus 618 IrIWDlr-t~~~~~~~--~l~~~~~~vsv~fSpdg~~Lasg-s~Dg~I~IwDl~t--g~~~~--~l~~~~~~---~~~v~ 686 (793)
|++||+. ++...... .......+..++|+|||++++++ ..++.|.+|++.. ++... .+...+.+ ...+.
T Consensus 164 v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 243 (347)
T 3hfq_A 164 VYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAA 243 (347)
T ss_dssp EEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEE
T ss_pred EEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcce
Confidence 9999998 44333222 22333456679999999977765 5678999999874 55422 22211111 13477
Q ss_pred EEEEeeCCCeEEEEEeCCCcEEEEEEcCCC---cEEEeeeecCCCCCccceeeeccCCccccCCccEEEEEEcCCCCcee
Q 003822 687 TRSYYLNGRDYIVSGSCDEHVVRICCAQTG---RRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKSEI 763 (793)
Q Consensus 687 s~afspdg~~~L~Sgs~Dg~II~IWDv~tg---~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~~~~i 763 (793)
.++|+|+|+.+++++..++.| .+|++... +.+. .+..+. ..+.+++|+|+++..+
T Consensus 244 ~i~~spdG~~l~v~~~~~~~v-~v~~~~~~g~~~~~~--~~~~~~-------------------~~~~~~~~spdg~~l~ 301 (347)
T 3hfq_A 244 AIRLSHDGHFLYVSNRGYNTL-AVFAVTADGHLTLIQ--QISTEG-------------------DFPRDFDLDPTEAFVV 301 (347)
T ss_dssp EEEECTTSCEEEEEEETTTEE-EEEEECGGGCEEEEE--EEECSS-------------------SCCCEEEECTTSSEEE
T ss_pred eEEECCCCCEEEEEeCCCCEE-EEEEECCCCcEEEeE--EEecCC-------------------CCcCeEEECCCCCEEE
Confidence 899999999444667778889 99999732 2222 222211 2467899999765433
Q ss_pred eEeeEEEeCCCcEEEEcCCC
Q 003822 764 VKVNLLASTDHCDKECSHGQ 783 (793)
Q Consensus 764 v~~~ltaS~Dg~VkvW~~~~ 783 (793)
+ ....++.|.+|..+.
T Consensus 302 v----~~~~~~~v~v~~~d~ 317 (347)
T 3hfq_A 302 V----VNQNTDNATLYARDL 317 (347)
T ss_dssp E----EETTTTEEEEEEECT
T ss_pred E----EEcCCCcEEEEEEeC
Confidence 3 344569999996543
No 147
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.78 E-value=5.1e-16 Score=169.13 Aligned_cols=256 Identities=13% Similarity=0.103 Sum_probs=170.1
Q ss_pred eEEEEEeCCCCCEEEEEeCC----CeEEEEECCC--CeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEE-cCCcEEEEEc
Q 003822 456 PRQFEYHPSISCLMVFGTLD----GEIVVVNHEN--ENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGS-DNGSLKLYDI 528 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~D----G~I~VWd~~t--~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs-~DgtV~vWDl 528 (793)
+..++|+| ++++|++++.+ |.|.+|+++. ++.........+......+++ +++++++++ .+++|.+|++
T Consensus 52 p~~l~~sp-dg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~---dg~~l~~~~~~~~~v~~~~~ 127 (361)
T 3scy_A 52 PSYLIPSA-DGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT---NGKNIVTANYSGGSITVFPI 127 (361)
T ss_dssp CCSEEECT-TSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE---CSSEEEEEETTTTEEEEEEB
T ss_pred CceEEECC-CCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE---CCCEEEEEECCCCEEEEEEe
Confidence 67799999 89999998876 7999998865 544332222234556777776 677777776 6889999999
Q ss_pred CCCCCccccc--ccCCc---eeEecCCCCeEEEEEccCCCEEEEEEC-CCcEEEEECCCCcE------E------EEEcc
Q 003822 529 RHMPPSIRGM--HYGAG---TVTFDEFDQLTSVHVNSMDELFLASGY-SKNIALYDINSGRR------L------QVFAD 590 (793)
Q Consensus 529 ~~~~~~~~~~--~~~~~---~~~~~~~~~V~sv~~s~~~~~lla~g~-Dg~I~IWDl~tg~~------l------~~~~~ 590 (793)
.......... ..+.. .........+.+++|+|++..+++++. ++.|.+|++..... + .....
T Consensus 128 ~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~ 207 (361)
T 3scy_A 128 GQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKV 207 (361)
T ss_dssp CTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEEC
T ss_pred CCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceec
Confidence 7543211110 00000 000011234688999999998887774 79999999875331 1 12222
Q ss_pred cCCCCeEEEEEcCCCCcEEEEEe-CCCeEEEEECCCCCccceEEccC----CCCeEEEEEecCCCEEEEEeCC--CeEEE
Q 003822 591 MHKEHINVVKFSNHSPSIFATSS-FDQDVKLWDLRQKPIQPCYTASS----SKGNVMVCFSPDDHYLLVSAVD--NEVRQ 663 (793)
Q Consensus 591 gh~~~V~sv~fspdg~~~LaTgs-~Dg~IrIWDlrt~~~~~~~~l~~----~~~~vsv~fSpdg~~Lasgs~D--g~I~I 663 (793)
.+...+..++|+|+| +++++++ .++.|.+||+.++.......... ...+..++|+|||++|+++..+ +.|.+
T Consensus 208 ~~~~~~~~~~~spdg-~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v 286 (361)
T 3scy_A 208 APGSGPRHLIFNSDG-KFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAI 286 (361)
T ss_dssp CTTCCEEEEEECTTS-SEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEE
T ss_pred CCCCCCeEEEEcCCC-CEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEE
Confidence 355678899999999 6665555 68999999998764433333221 1334569999999999877754 89999
Q ss_pred EEcC--CCcEEEEEeeecCCCCCcEEEEEeeCCCeEEEEEe-CCCcEEEEE--EcCCCcEEE
Q 003822 664 LLAV--DGRVHLNFGITATGSSQNYTRSYYLNGRDYIVSGS-CDEHVVRIC--CAQTGRRLR 720 (793)
Q Consensus 664 wDl~--tg~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs-~Dg~II~IW--Dv~tg~~l~ 720 (793)
|++. +++........ . ...+..++|+|+|+ +|++++ .++.+ .+| |..+|+...
T Consensus 287 ~~~~~~~g~~~~~~~~~-~-g~~~~~~~~spdg~-~l~~~~~~~~~v-~v~~~d~~~g~~~~ 344 (361)
T 3scy_A 287 FKVDETNGTLTKVGYQL-T-GIHPRNFIITPNGK-YLLVACRDTNVI-QIFERDQATGLLTD 344 (361)
T ss_dssp EEECTTTCCEEEEEEEE-C-SSCCCEEEECTTSC-EEEEEETTTTEE-EEEEECTTTCCEEE
T ss_pred EEEcCCCCcEEEeeEec-C-CCCCceEEECCCCC-EEEEEECCCCCE-EEEEEECCCCcEee
Confidence 9985 55532222221 2 45677899999999 777766 56777 996 555777654
No 148
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.78 E-value=1.8e-17 Score=193.24 Aligned_cols=233 Identities=12% Similarity=0.114 Sum_probs=169.0
Q ss_pred eEEEEEeCCCCCEEEEEeC-CCeEEEEECCCCeEEEEEeccCCC-CCEEEEEEeeCCCCEEEEEEc---CCcEEEEEcCC
Q 003822 456 PRQFEYHPSISCLMVFGTL-DGEIVVVNHENENIVSYIPSFGAM-NSVLGLCWLKKYPSKLIAGSD---NGSLKLYDIRH 530 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~-DG~I~VWd~~t~~~i~~l~~~~h~-~~V~sv~fs~~~g~~Lasgs~---DgtV~vWDl~~ 530 (793)
|++++|+| ||+.||+++. ||++.||++++++... +. .|. ..+..++|+ ++ +.+++++. +...++|.+..
T Consensus 24 ~~~~~~~~-DG~~la~~s~~~g~~~lw~~~~g~~~~-lt--~~~~~~~~~~~~s-pd-~~l~~~~~~~g~~~~~l~~~~~ 97 (582)
T 3o4h_A 24 KYSLQGVV-DGDKLLVVGFSEGSVNAYLYDGGETVK-LN--REPINSVLDPHYG-VG-RVILVRDVSKGAEQHALFKVNT 97 (582)
T ss_dssp EEEEEEEE-TTTEEEEEEEETTEEEEEEEETTEEEE-CC--SSCCSEECEECTT-CS-EEEEEEECSTTSCCEEEEEEET
T ss_pred hheeecCC-CCCeEEEEEccCCceeEEEEcCCCcEe-ee--cccccccccccCC-CC-eEEEEeccCCCCcceEEEEEec
Confidence 89999999 9999999887 9999999997666543 33 444 689999998 56 67777765 45667766654
Q ss_pred --CCCcccccccCCceeEecCCCCeEEEEEccCCCE-EEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCc
Q 003822 531 --MPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDEL-FLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPS 607 (793)
Q Consensus 531 --~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~-lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~ 607 (793)
..... .......+...+|+|+++. +++++.++.+.+||+.+++...... +.. .+++|+|+| +
T Consensus 98 ~~~g~~~----------~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~--~~~--~~~~~spDG-~ 162 (582)
T 3o4h_A 98 SRPGEEQ----------RLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELAR--LPG--FGFVSDIRG-D 162 (582)
T ss_dssp TSTTCCE----------ECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEE--ESS--CEEEEEEET-T
T ss_pred cCCCccc----------cccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeec--CCC--ceEEECCCC-C
Confidence 22111 1111223445677777754 4555566666699999887665554 333 789999999 8
Q ss_pred EEEEEeCC----CeEEEEECCCCCccceEEccCCCCeE-EEEEecCCCEEEEEeCCC--eEEEEEcCCCcEEEEEeeecC
Q 003822 608 IFATSSFD----QDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLVSAVDN--EVRQLLAVDGRVHLNFGITAT 680 (793)
Q Consensus 608 ~LaTgs~D----g~IrIWDlrt~~~~~~~~l~~~~~~v-sv~fSpdg~~Lasgs~Dg--~I~IwDl~tg~~~~~l~~~~~ 680 (793)
++++++.+ +.|++||+.+++.. .+..+...+ .++|||||++|+++..++ .|++||+.+++.. .+. .
T Consensus 163 ~la~~~~~~~~~~~i~~~d~~~g~~~---~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~---~ 235 (582)
T 3o4h_A 163 LIAGLGFFGGGRVSLFTSNLSSGGLR---VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLE---L 235 (582)
T ss_dssp EEEEEEEEETTEEEEEEEETTTCCCE---EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECC---C
T ss_pred EEEEEEEcCCCCeEEEEEcCCCCCce---EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-Ecc---C
Confidence 88887777 78999999887544 334444444 599999999999888888 8999999998875 332 2
Q ss_pred CCCCcEEEE--------EeeCCCeEEEEEeCCCcEEEEEEcCCCcEEE
Q 003822 681 GSSQNYTRS--------YYLNGRDYIVSGSCDEHVVRICCAQTGRRLR 720 (793)
Q Consensus 681 ~~~~v~s~a--------fspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~ 720 (793)
+...+...+ |+|||. ++++++.|+++ ++|++ |+.+.
T Consensus 236 ~~~~~~~~~~~~~~~~~~spdg~-~~~~~~~~g~~-~l~~~--g~~~~ 279 (582)
T 3o4h_A 236 PSKDFSSYRPTAITWLGYLPDGR-LAVVARREGRS-AVFID--GERVE 279 (582)
T ss_dssp SCSHHHHHCCSEEEEEEECTTSC-EEEEEEETTEE-EEEET--TEEEC
T ss_pred CCcChhhhhhccccceeEcCCCc-EEEEEEcCCcE-EEEEE--CCeec
Confidence 333344455 999995 99999999999 99999 65543
No 149
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.78 E-value=1.4e-16 Score=171.56 Aligned_cols=230 Identities=11% Similarity=0.083 Sum_probs=173.1
Q ss_pred eEEEEEeCCCCC-EEEEEeCCCeEEEEECCCCeEEEEEeccCCCC-------CEEEEEEeeCCCCEEEEEE--cCCcEEE
Q 003822 456 PRQFEYHPSISC-LMVFGTLDGEIVVVNHENENIVSYIPSFGAMN-------SVLGLCWLKKYPSKLIAGS--DNGSLKL 525 (793)
Q Consensus 456 V~~vafsP~d~~-~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~-------~V~sv~fs~~~g~~Lasgs--~DgtV~v 525 (793)
+..++|+| +++ +++++..++.|.+||..+++.+..+....... .+.+++|+ ++++.+++++ .++.|.+
T Consensus 91 ~~~~~~s~-dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~dg~~l~~~~~~~~~~i~~ 168 (353)
T 3vgz_A 91 PFGATINN-TTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVAD-DATNTVYISGIGKESVIWV 168 (353)
T ss_dssp CCSEEEET-TTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEE-TTTTEEEEEEESSSCEEEE
T ss_pred cceEEECC-CCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEEC-CCCCEEEEEecCCCceEEE
Confidence 56789999 777 45555668999999999999888876422111 27889998 7888777766 4789999
Q ss_pred EEcCCCCCcccccccCCceeEec-CCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcc---cCCCCeEEEEE
Q 003822 526 YDIRHMPPSIRGMHYGAGTVTFD-EFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFAD---MHKEHINVVKF 601 (793)
Q Consensus 526 WDl~~~~~~~~~~~~~~~~~~~~-~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~---gh~~~V~sv~f 601 (793)
||..+++.. ..+. +...+.+++|+|+++.+++++.++.|.+||+.+++.+..+.. ++...+..++|
T Consensus 169 ~d~~~~~~~----------~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (353)
T 3vgz_A 169 VDGGNIKLK----------TAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISL 238 (353)
T ss_dssp EETTTTEEE----------EEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEE
T ss_pred EcCCCCceE----------EEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEE
Confidence 999876542 1122 223477889999999999998999999999999998888763 25567889999
Q ss_pred cCCCCcEEEEEeCCCeEEEEECCCCCccceEEccCCCCeEEEEEecCCCEEEEEe-CCCeEEEEEcCCCcEEEEEeeecC
Q 003822 602 SNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLVSA-VDNEVRQLLAVDGRVHLNFGITAT 680 (793)
Q Consensus 602 spdg~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs-~Dg~I~IwDl~tg~~~~~l~~~~~ 680 (793)
+|++..++++...++.|.+||+.+++......... ...++|+|+|+++++++ .++.|.+||..+++.+..+.
T Consensus 239 s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~---- 311 (353)
T 3vgz_A 239 DTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE---SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFD---- 311 (353)
T ss_dssp ETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS---CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEE----
T ss_pred CCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC---CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEe----
Confidence 99994444555556999999999886544444322 24589999999877766 68999999999999887775
Q ss_pred CCCCcEEEEEeeCCCeEEEEEeCCC
Q 003822 681 GSSQNYTRSYYLNGRDYIVSGSCDE 705 (793)
Q Consensus 681 ~~~~v~s~afspdg~~~L~Sgs~Dg 705 (793)
....+..++|+|+|+ +|+.+..++
T Consensus 312 ~~~~~~~~~~s~dg~-~l~v~~~~~ 335 (353)
T 3vgz_A 312 TPTHPNSLALSADGK-TLYVSVKQK 335 (353)
T ss_dssp CCSEEEEEEECTTSC-EEEEEEECC
T ss_pred cCCCCCeEEEcCCCC-EEEEEEccc
Confidence 234678899999999 555554443
No 150
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.77 E-value=1.7e-17 Score=172.67 Aligned_cols=231 Identities=10% Similarity=0.034 Sum_probs=164.9
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCC-CeEEEEEeccCC-CCCEEEEEEeeCCCCEEEEEE--cCCcEEEEEcCCC
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHEN-ENIVSYIPSFGA-MNSVLGLCWLKKYPSKLIAGS--DNGSLKLYDIRHM 531 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t-~~~i~~l~~~~h-~~~V~sv~fs~~~g~~Lasgs--~DgtV~vWDl~~~ 531 (793)
|.+++|+| ++++|++++ ++.|.+||+.+ ++...... ++ ...|.+++|+ +++++|++++ .++.+++|.++..
T Consensus 44 v~~~~~sp-dg~~l~~~~-~~~i~~~d~~~~~~~~~~~~--~~~~~~~~~~~~s-pdg~~l~~~~~~~~~~~~l~~~~~~ 118 (297)
T 2ojh_A 44 FEAPNWSP-DGKYLLLNS-EGLLYRLSLAGDPSPEKVDT--GFATICNNDHGIS-PDGALYAISDKVEFGKSAIYLLPST 118 (297)
T ss_dssp CEEEEECT-TSSEEEEEE-TTEEEEEESSSCCSCEECCC--TTCCCBCSCCEEC-TTSSEEEEEECTTTSSCEEEEEETT
T ss_pred eEeeEECC-CCCEEEEEc-CCeEEEEeCCCCCCceEecc--ccccccccceEEC-CCCCEEEEEEeCCCCcceEEEEECC
Confidence 89999999 899999987 78999999998 77665443 33 4678899998 7899999998 4456666666432
Q ss_pred CCcccccccCCceeEecCCCCeEEEEEccCCCEEE-EEECCCcEEEEECCC-CcEEEEEcccCCCCeEEEEEcCCCCcEE
Q 003822 532 PPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFL-ASGYSKNIALYDINS-GRRLQVFADMHKEHINVVKFSNHSPSIF 609 (793)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~ll-a~g~Dg~I~IWDl~t-g~~l~~~~~gh~~~V~sv~fspdg~~~L 609 (793)
..... .+.....+..++|+|++..++ +++.++.+.+|++.. +.....+. .|...+.+++|+|++ ..+
T Consensus 119 ~~~~~---------~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~s~dg-~~l 187 (297)
T 2ojh_A 119 GGTPR---------LMTKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLT-HGEGRNDGPDYSPDG-RWI 187 (297)
T ss_dssp CCCCE---------ECCSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECC-CSSSCEEEEEECTTS-SEE
T ss_pred CCceE---------EeecCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcc-cCCCccccceECCCC-CEE
Confidence 21111 122233578899999999887 455789999998642 23344555 488899999999999 555
Q ss_pred EEEe-CCCeEEEEECCCCCccceEEccCCCCeE-EEEEecCCCEEEEEeCC-----------CeEEEEEcCCCcEEEEEe
Q 003822 610 ATSS-FDQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLVSAVD-----------NEVRQLLAVDGRVHLNFG 676 (793)
Q Consensus 610 aTgs-~Dg~IrIWDlrt~~~~~~~~l~~~~~~v-sv~fSpdg~~Lasgs~D-----------g~I~IwDl~tg~~~~~l~ 676 (793)
+.++ .++.+++|++.... .....+..+...+ .++|+|+|++|++++.+ +.|++||+.+++......
T Consensus 188 ~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~ 266 (297)
T 2ojh_A 188 YFNSSRTGQMQIWRVRVDG-SSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFD 266 (297)
T ss_dssp EEEECTTSSCEEEEEETTS-SCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEE
T ss_pred EEEecCCCCccEEEECCCC-CCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeec
Confidence 5544 68999999986322 2234444444444 59999999999988865 569999999887643332
Q ss_pred eecCCCCCcEEEEEeeCCCeEEEEEeCCC
Q 003822 677 ITATGSSQNYTRSYYLNGRDYIVSGSCDE 705 (793)
Q Consensus 677 ~~~~~~~~v~s~afspdg~~~L~Sgs~Dg 705 (793)
. ..+...+..++|+|+|+ +|++++.+.
T Consensus 267 ~-~~~~~~~~~~~~spdg~-~l~~~~~~~ 293 (297)
T 2ojh_A 267 L-FGGQGTMNSPNWSPDGD-EFAYVRYFP 293 (297)
T ss_dssp E-EESTTTSCSCCBCTTSS-EEEEEEECC
T ss_pred c-CCCCcccccceECCCCC-EEEEEEecc
Confidence 2 12445677889999999 666665553
No 151
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.76 E-value=4.4e-16 Score=169.63 Aligned_cols=282 Identities=10% Similarity=0.113 Sum_probs=182.4
Q ss_pred CCEEEEEeC----CCeEEEEEC--CCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcC----CcEEEEEcCCCCCcc
Q 003822 466 SCLMVFGTL----DGEIVVVNH--ENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDN----GSLKLYDIRHMPPSI 535 (793)
Q Consensus 466 ~~~Lasgs~----DG~I~VWd~--~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~D----gtV~vWDl~~~~~~~ 535 (793)
..+++.|+. ++.|.+|.+ .+++....... +...+..++|+ +++++|++++.+ +.|.+|++.......
T Consensus 13 ~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~--~~~~p~~l~~s-pdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~ 89 (361)
T 3scy_A 13 ELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDA--EVANPSYLIPS-ADGKFVYSVNEFSKDQAAVSAFAFDKEKGTL 89 (361)
T ss_dssp EEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEE--ECSCCCSEEEC-TTSSEEEEEECCSSTTCEEEEEEEETTTTEE
T ss_pred ceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecc--cCCCCceEEEC-CCCCEEEEEEccCCCCCcEEEEEEeCCCCcE
Confidence 345666653 567999866 55665443332 55677789997 789999999886 799999987632211
Q ss_pred cccccCCceeEecCCCCeEEEEEccCCCEEEEEE-CCCcEEEEECCCCcEEEE----Ec-cc--------CCCCeEEEEE
Q 003822 536 RGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASG-YSKNIALYDINSGRRLQV----FA-DM--------HKEHINVVKF 601 (793)
Q Consensus 536 ~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g-~Dg~I~IWDl~tg~~l~~----~~-~g--------h~~~V~sv~f 601 (793)
.... ....+...+..+++ ++..+++++ .++.|.+|++.....+.. +. .+ +...+.+++|
T Consensus 90 ~~~~-----~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 162 (361)
T 3scy_A 90 HLLN-----TQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRI 162 (361)
T ss_dssp EEEE-----EEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEE
T ss_pred EEee-----EeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEE
Confidence 1110 00112245667777 777777777 479999999975432211 11 01 2234688999
Q ss_pred cCCCCcEEEEEeCCCeEEEEECCCCCc----c--------ceEEccCCCCeEEEEEecCCCEEEEEe-CCCeEEEEEcCC
Q 003822 602 SNHSPSIFATSSFDQDVKLWDLRQKPI----Q--------PCYTASSSKGNVMVCFSPDDHYLLVSA-VDNEVRQLLAVD 668 (793)
Q Consensus 602 spdg~~~LaTgs~Dg~IrIWDlrt~~~----~--------~~~~l~~~~~~vsv~fSpdg~~Lasgs-~Dg~I~IwDl~t 668 (793)
+|+|..+++++..++.|++|++..... . ..........+..++|+|+|+++++++ .++.|.+|++.+
T Consensus 163 spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~ 242 (361)
T 3scy_A 163 TPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYAD 242 (361)
T ss_dssp CTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEET
T ss_pred CCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecC
Confidence 999943455555689999999876432 1 233444555666799999999988887 589999999988
Q ss_pred CcEE--EEEeeecCCCCCcEEEEEeeCCCeEEEEEeC--CCcEEEEEEcC--CCcEEEeeeecCCCCCccceeeeccCCc
Q 003822 669 GRVH--LNFGITATGSSQNYTRSYYLNGRDYIVSGSC--DEHVVRICCAQ--TGRRLRDISLEGKGSGTSMFVQSLRGDP 742 (793)
Q Consensus 669 g~~~--~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~--Dg~II~IWDv~--tg~~l~~~~L~gh~~~~s~~v~sl~g~~ 742 (793)
++.. ..+.....+......++|+|||+ +|+++.. ++.+ .+|++. +|+......+.. .
T Consensus 243 g~~~~~~~~~~~~~~~~~~~~i~~spdg~-~l~v~~~~~~~~i-~v~~~~~~~g~~~~~~~~~~-g-------------- 305 (361)
T 3scy_A 243 GMLDEIQTVAADTVNAQGSGDIHLSPDGK-YLYASNRLKADGV-AIFKVDETNGTLTKVGYQLT-G-------------- 305 (361)
T ss_dssp TEEEEEEEEESCSSCCCCEEEEEECTTSS-EEEEEECSSSCEE-EEEEECTTTCCEEEEEEEEC-S--------------
T ss_pred CceEEeEEEecCCCCCCCcccEEECCCCC-EEEEECCCCCCEE-EEEEEcCCCCcEEEeeEecC-C--------------
Confidence 7653 33332333344567899999999 6655554 4788 999995 555322001211 0
Q ss_pred cccCCccEEEEEEcCCCCceeeEeeEEEeCCCcEEEEcCCC
Q 003822 743 FRDFNMSILAAYTRPSSKSEIVKVNLLASTDHCDKECSHGQ 783 (793)
Q Consensus 743 ~~~h~~~V~sva~~P~~~~~iv~~~ltaS~Dg~VkvW~~~~ 783 (793)
..+.+++|+|+++..++ ....++.|.+|..+.
T Consensus 306 -----~~~~~~~~spdg~~l~~----~~~~~~~v~v~~~d~ 337 (361)
T 3scy_A 306 -----IHPRNFIITPNGKYLLV----ACRDTNVIQIFERDQ 337 (361)
T ss_dssp -----SCCCEEEECTTSCEEEE----EETTTTEEEEEEECT
T ss_pred -----CCCceEEECCCCCEEEE----EECCCCCEEEEEEEC
Confidence 24668999997654333 344789999976653
No 152
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.76 E-value=1.4e-16 Score=180.02 Aligned_cols=250 Identities=14% Similarity=0.103 Sum_probs=165.6
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCC-----------CeEEEEE--eccCCCCCEEEEEEeeCCCCEEE----EEE
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHEN-----------ENIVSYI--PSFGAMNSVLGLCWLKKYPSKLI----AGS 518 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t-----------~~~i~~l--~~~~h~~~V~sv~fs~~~g~~La----sgs 518 (793)
+..+++++ ++.++++|+.+| ++||+... ....... ....+...|.+++|+ +++++|+ +|+
T Consensus 39 ~n~lavs~-~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s-pdg~~lav~~~sgs 115 (434)
T 2oit_A 39 SSLLAVSN-KYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALS-CDNLTLSACMMSSE 115 (434)
T ss_dssp CBCEEEET-TTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEEC-TTSCEEEEEEEETT
T ss_pred ccEEEEec-CCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEc-CCCCEEEEEEeccC
Confidence 67899999 888999999888 89987531 1111100 001456789999998 7899998 788
Q ss_pred cCCcEEEEEcCCCCC----cccccccCCceeEecCCCCeEEEEEccC-CCEEEEEECCCcEEEEECCCCcEEEEEcccCC
Q 003822 519 DNGSLKLYDIRHMPP----SIRGMHYGAGTVTFDEFDQLTSVHVNSM-DELFLASGYSKNIALYDINSGRRLQVFADMHK 593 (793)
Q Consensus 519 ~DgtV~vWDl~~~~~----~~~~~~~~~~~~~~~~~~~V~sv~~s~~-~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~ 593 (793)
.|++|++||+.+... ...... .......|...|.+++|+|. +..+++++.||+|++||++++..+.... +|.
T Consensus 116 ~d~~v~iwd~~~~~~~~~~~~~~~~--~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~-~~~ 192 (434)
T 2oit_A 116 YGSIIAFFDVRTFSNEAKQQKRPFA--YHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATL-PST 192 (434)
T ss_dssp TEEEEEEEEHHHHHCTTCSSCCCSE--EEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEE-CGG
T ss_pred CCceEEEEEccccccCCcCCcceee--eeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeecc-CCC
Confidence 899999999976410 000000 00011125578999999998 6778888899999999999997776666 599
Q ss_pred CCeEEEEEcCCCCcEEEEEeCCCeEEEEECCCCCccceEEccC-----CC-CeEEEEEecCCCEEEEEe-CCC------e
Q 003822 594 EHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASS-----SK-GNVMVCFSPDDHYLLVSA-VDN------E 660 (793)
Q Consensus 594 ~~V~sv~fspdg~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~-----~~-~~vsv~fSpdg~~Lasgs-~Dg------~ 660 (793)
..|++++|+|+| ++|++|+.||+|++||++ +........+. |. .+.+++|++++.++++.+ .+| .
T Consensus 193 ~~v~~v~wspdg-~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~ 270 (434)
T 2oit_A 193 VAVTSVCWSPKG-KQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPD 270 (434)
T ss_dssp GCEEEEEECTTS-SCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCE
T ss_pred CceeEEEEcCCC-CEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCc
Confidence 999999999998 899999999999999998 33222222211 11 345699999988876543 343 3
Q ss_pred EEEEEcCCCc-----EEEEEeee----cCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcC
Q 003822 661 VRQLLAVDGR-----VHLNFGIT----ATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQ 714 (793)
Q Consensus 661 I~IwDl~tg~-----~~~~l~~~----~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~ 714 (793)
+++|++.+.+ ....+... .......+...+-++.+.++++.+..+.| .|....
T Consensus 271 v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv-~vl~~~ 332 (434)
T 2oit_A 271 VVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEV-SILARQ 332 (434)
T ss_dssp EEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBC-EEEEEC
T ss_pred eEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCce-eEEEec
Confidence 8999998652 11111110 01111223344447777444444445556 777643
No 153
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.76 E-value=2.6e-17 Score=196.34 Aligned_cols=252 Identities=12% Similarity=-0.003 Sum_probs=170.2
Q ss_pred eEEEEEeCCCCCEEEEEeCC---------CeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEE
Q 003822 456 PRQFEYHPSISCLMVFGTLD---------GEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLY 526 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~D---------G~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vW 526 (793)
|.+++|+| |+++|++++.+ +.+.+||+.+++........+|...+..++|+ |+|+.|+.++. +.|++|
T Consensus 63 v~~~~~Sp-Dg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~S-PdG~~la~~~~-~~i~~~ 139 (723)
T 1xfd_A 63 AIRYEISP-DREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWG-PKGQQLIFIFE-NNIYYC 139 (723)
T ss_dssp CSEEEECT-TSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBC-SSTTCEEEEET-TEEEEE
T ss_pred cceEEECC-CCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCccccccccccEEC-CCCCEEEEEEC-CeEEEE
Confidence 78999999 99999999864 78889999988763222223455568899998 79999999886 799999
Q ss_pred EcCCCCCcccccccCCceeEecC---------CCCeEEEEEccCCCEEEEEECCC-------------------------
Q 003822 527 DIRHMPPSIRGMHYGAGTVTFDE---------FDQLTSVHVNSMDELFLASGYSK------------------------- 572 (793)
Q Consensus 527 Dl~~~~~~~~~~~~~~~~~~~~~---------~~~V~sv~~s~~~~~lla~g~Dg------------------------- 572 (793)
|+.+++............+...+ ...+.+++|+|++..+++++.++
T Consensus 140 ~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (723)
T 1xfd_A 140 AHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYP 219 (723)
T ss_dssp SSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECC
T ss_pred ECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCC
Confidence 99887652211111111100000 12347899999999999887542
Q ss_pred ---------cEEEEECCCCcEEEEEccc-----CCCCeEEEEEcCCCCcEEEEEeC----CCeEEEEECCCCCccceEEc
Q 003822 573 ---------NIALYDINSGRRLQVFADM-----HKEHINVVKFSNHSPSIFATSSF----DQDVKLWDLRQKPIQPCYTA 634 (793)
Q Consensus 573 ---------~I~IWDl~tg~~l~~~~~g-----h~~~V~sv~fspdg~~~LaTgs~----Dg~IrIWDlrt~~~~~~~~l 634 (793)
.|++||+.+++....+... +...+..++|+|+| +++++.+. +..|++||+.+++...+...
T Consensus 220 ~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg-~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~ 298 (723)
T 1xfd_A 220 KAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATST-KVAVTWLNRAQNVSILTLCDATTGVCTKKHED 298 (723)
T ss_dssp BTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSS-EEEEEEEETTSCEEEEEEEETTTCCEEEEEEE
T ss_pred CCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCC-eEEEEEEcCCCCeEEEEEEeCCCCcceEEEEe
Confidence 7999999988866666521 26788999999999 67766643 35799999998865544432
Q ss_pred cCCCCe----EEEEEecCCCEEEEE--eCCC------eEEEEE-cCCCcE--EEEEeeecCCCCCcEE-EEEeeCCCeEE
Q 003822 635 SSSKGN----VMVCFSPDDHYLLVS--AVDN------EVRQLL-AVDGRV--HLNFGITATGSSQNYT-RSYYLNGRDYI 698 (793)
Q Consensus 635 ~~~~~~----vsv~fSpdg~~Lasg--s~Dg------~I~IwD-l~tg~~--~~~l~~~~~~~~~v~s-~afspdg~~~L 698 (793)
...... ..++|+|||+.|+.. ..++ .|.+|| ..++.. ...+. .+...+.. ++|+|+|+ +|
T Consensus 299 ~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~---~~~~~~~~~~~~spdg~-~l 374 (723)
T 1xfd_A 299 ESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSIT---SGDWDVTKILAYDEKGN-KI 374 (723)
T ss_dssp ECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSC---CSSSCEEEEEEEETTTT-EE
T ss_pred ccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEee---cCCeEEEeeeEEcCCCC-EE
Confidence 211111 257999999987754 4566 567777 344440 23332 23333444 68999999 66
Q ss_pred EEE-eCC--CcEEEEEEcCCC
Q 003822 699 VSG-SCD--EHVVRICCAQTG 716 (793)
Q Consensus 699 ~Sg-s~D--g~II~IWDv~tg 716 (793)
+.. ..+ +.+ ++|++..+
T Consensus 375 ~~~~~~~~~~~~-~l~~~~~~ 394 (723)
T 1xfd_A 375 YFLSTEDLPRRR-QLYSANTV 394 (723)
T ss_dssp EEEESSSCTTCC-EEEEECSS
T ss_pred EEEEcCCCCcce-EEEEEeCC
Confidence 544 444 778 99988653
No 154
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.75 E-value=5.4e-17 Score=183.38 Aligned_cols=224 Identities=13% Similarity=0.137 Sum_probs=158.2
Q ss_pred CeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcc------cccccCCceeEecC
Q 003822 476 GEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSI------RGMHYGAGTVTFDE 549 (793)
Q Consensus 476 G~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~------~~~~~~~~~~~~~~ 549 (793)
+.+++|+... . + ....+..++++ +++.++++++.|+ +++|+........ .............+
T Consensus 23 ~~vri~~~~~-~----~----~~~~~n~lavs-~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (434)
T 2oit_A 23 KKVRIFDSPE-E----L----PKERSSLLAVS-NKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPM 91 (434)
T ss_dssp CEEECSCCCS-S----C----CCSCCBCEEEE-TTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECC
T ss_pred eeEEecCCcc-c----c----CCCCccEEEEe-cCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccC
Confidence 5688876531 1 1 22357788887 6788999999887 9999865321100 00000111223445
Q ss_pred CCCeEEEEEccCCCEEE----EEECCCcEEEEECCCC--------cE---EEEEcccCCCCeEEEEEcCCCCcEEEEEeC
Q 003822 550 FDQLTSVHVNSMDELFL----ASGYSKNIALYDINSG--------RR---LQVFADMHKEHINVVKFSNHSPSIFATSSF 614 (793)
Q Consensus 550 ~~~V~sv~~s~~~~~ll----a~g~Dg~I~IWDl~tg--------~~---l~~~~~gh~~~V~sv~fspdg~~~LaTgs~ 614 (793)
...|.+++|++++..++ +++.|+.|++||+.++ ++ +..+. +|...|++++|+|+++.+|++++.
T Consensus 92 ~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~v~~~p~~~~~las~s~ 170 (434)
T 2oit_A 92 KFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLK-DAGGMVIDMKWNPTVPSMVAVCLA 170 (434)
T ss_dssp SSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCC-SGGGSEEEEEECSSCTTEEEEEET
T ss_pred CCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccC-CCCCceEEEEECCCCCCEEEEEEC
Confidence 56799999999999888 4556999999998764 22 34444 699999999999985589999999
Q ss_pred CCeEEEEECCCCCccceEEccCCC-CeEEEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecC----CCCCcEEEE
Q 003822 615 DQDVKLWDLRQKPIQPCYTASSSK-GNVMVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITAT----GSSQNYTRS 689 (793)
Q Consensus 615 Dg~IrIWDlrt~~~~~~~~l~~~~-~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~----~~~~v~s~a 689 (793)
||+|++||++++. ......+|. .+.+++|+|+|++|++|+.||.|++||.+ ++....+..+.. +...+..+.
T Consensus 171 Dg~v~iwD~~~~~--~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~ 247 (434)
T 2oit_A 171 DGSIAVLQVTETV--KVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVL 247 (434)
T ss_dssp TSCEEEEEESSSE--EEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEE
T ss_pred CCeEEEEEcCCCc--ceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEE
Confidence 9999999999873 333333443 45579999999999999999999999998 666555543322 123688899
Q ss_pred EeeCCCeEEE-EEeCCCc------EEEEEEcCCC
Q 003822 690 YYLNGRDYIV-SGSCDEH------VVRICCAQTG 716 (793)
Q Consensus 690 fspdg~~~L~-Sgs~Dg~------II~IWDv~tg 716 (793)
|++++. +++ .++.||. + ++|++...
T Consensus 248 w~~~~~-~l~~~~~~dg~~~~~~~v-~i~~l~~~ 279 (434)
T 2oit_A 248 WIGTYV-FAIVYAAADGTLETSPDV-VMALLPKK 279 (434)
T ss_dssp EEETTE-EEEEEEETTCCSSSCCEE-EEEECCCT
T ss_pred EecCce-EEEEEccCCCccCCCCce-EEEEeccC
Confidence 999887 543 3445543 6 99999765
No 155
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.74 E-value=1.4e-16 Score=199.11 Aligned_cols=277 Identities=9% Similarity=0.009 Sum_probs=200.2
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCC-CeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCc
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHEN-ENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS 534 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t-~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~ 534 (793)
+.++.|+| + .++++++.+|++.||.+.. +.....+. .|. .+...+|+ ++|+.++++ .++.|.+||+.....
T Consensus 206 v~~~~~s~-d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~--~~~-~~~~~~~S-pDG~~la~~-~~~~i~~~d~~~~~l- 277 (1045)
T 1k32_A 206 VSSPVIVG-H-RIYFITDIDGFGQIYSTDLDGKDLRKHT--SFT-DYYPRHLN-TDGRRILFS-KGGSIYIFNPDTEKI- 277 (1045)
T ss_dssp CEEEEEET-T-EEEEEECTTSSCEEEEEETTSCSCEECC--CCC-SSCEEEEE-ESSSCEEEE-ETTEEEEECTTTCCE-
T ss_pred ccceEEeC-C-EEEEEEeccCceEEEEEeCCCCcceEec--CCC-CcceeeEc-CCCCEEEEE-eCCEEEEecCCceEe-
Confidence 78999999 5 6777888889999997653 33333343 343 45667887 688888887 489999999843322
Q ss_pred ccccccCC---ceeEecCCCCeEEEEEc-cCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCC-CeEEEEEcCCCCcEE
Q 003822 535 IRGMHYGA---GTVTFDEFDQLTSVHVN-SMDELFLASGYSKNIALYDINSGRRLQVFADMHKE-HINVVKFSNHSPSIF 609 (793)
Q Consensus 535 ~~~~~~~~---~~~~~~~~~~V~sv~~s-~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~-~V~sv~fspdg~~~L 609 (793)
..+.... ......+...+.+++|+ |++..+++++ ++.|.+|++.++.... +. .|.. .+..++|+ +| ..+
T Consensus 278 -~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~-~~-~~~~~~~~~~~~s-dg-~~l 351 (1045)
T 1k32_A 278 -EKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK-VP-EPLRIRYVRRGGD-TK-VAF 351 (1045)
T ss_dssp -EECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEE-CS-CCSCEEEEEECSS-SE-EEE
T ss_pred -eeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEE-cc-CCCcceEEeeeEc-CC-CeE
Confidence 1111110 01111233468999999 8888887777 8899999999877554 44 4777 89999999 88 788
Q ss_pred EEEeCCCeEE-EEECCCCCccceEEccCC-CCeEEEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcEE
Q 003822 610 ATSSFDQDVK-LWDLRQKPIQPCYTASSS-KGNVMVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNYT 687 (793)
Q Consensus 610 aTgs~Dg~Ir-IWDlrt~~~~~~~~l~~~-~~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s 687 (793)
++++.++.+. +||+.++.... +.++ ..+..++|+|||++|++++.++.|++||+.+++...... .+...+..
T Consensus 352 ~~~s~~~~l~~~~d~~~~~~~~---l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~---~~~~~v~~ 425 (1045)
T 1k32_A 352 IHGTREGDFLGIYDYRTGKAEK---FEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIER---SREAMITD 425 (1045)
T ss_dssp EEEETTEEEEEEEETTTCCEEE---CCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE---CSSSCCCC
T ss_pred EEEECCCceEEEEECCCCCceE---ecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEecc---CCCCCccc
Confidence 8888888888 99998764332 2244 344569999999999999999999999999998766553 34556788
Q ss_pred EEEeeCCCeEEEEEeCCC----------cEEEEEEcCCCcEEEeeeecCCCCCccceeeeccCCccccCCccEEEEEEcC
Q 003822 688 RSYYLNGRDYIVSGSCDE----------HVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRP 757 (793)
Q Consensus 688 ~afspdg~~~L~Sgs~Dg----------~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P 757 (793)
++|+|||+ +|++++.++ .+ ++||+.+++ +. .+.+|. ..+..++|+|
T Consensus 426 ~~~SpDG~-~la~~~~~~~~~~~~~~~~~i-~l~d~~~g~-~~--~l~~~~-------------------~~~~~~~~sp 481 (1045)
T 1k32_A 426 FTISDNSR-FIAYGFPLKHGETDGYVMQAI-HVYDMEGRK-IF--AATTEN-------------------SHDYAPAFDA 481 (1045)
T ss_dssp EEECTTSC-EEEEEEEECSSTTCSCCEEEE-EEEETTTTE-EE--ECSCSS-------------------SBEEEEEECT
T ss_pred eEECCCCC-eEEEEecCccccccCCCCCeE-EEEECCCCc-EE--EeeCCC-------------------cccCCceEcC
Confidence 99999999 777776644 77 999999987 44 444433 3577899999
Q ss_pred CCCceeeEeeEEEeCCCcEEEEcC
Q 003822 758 SSKSEIVKVNLLASTDHCDKECSH 781 (793)
Q Consensus 758 ~~~~~iv~~~ltaS~Dg~VkvW~~ 781 (793)
++. .++ +++.++..++|..
T Consensus 482 dG~-~l~----~~s~~~~~~~~~~ 500 (1045)
T 1k32_A 482 DSK-NLY----YLSYRSLDPSPDR 500 (1045)
T ss_dssp TSC-EEE----EEESCCCCCEECS
T ss_pred CCC-EEE----EEecccCCcCcch
Confidence 754 344 5777777777764
No 156
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.72 E-value=4.9e-16 Score=166.81 Aligned_cols=237 Identities=7% Similarity=-0.024 Sum_probs=165.7
Q ss_pred EEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEE-CCCcEEEEECCCC
Q 003822 504 LCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASG-YSKNIALYDINSG 582 (793)
Q Consensus 504 v~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g-~Dg~I~IWDl~tg 582 (793)
+++. +++.++++++.+++|.+||..+++.... +.......+..++|+|++..+++++ .++.|.+||+.++
T Consensus 5 ~~~~-~~~~~~v~~~~~~~v~~~d~~~~~~~~~--------~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~ 75 (349)
T 1jmx_B 5 PALK-AGHEYMIVTNYPNNLHVVDVASDTVYKS--------CVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTC 75 (349)
T ss_dssp CCCC-TTCEEEEEEETTTEEEEEETTTTEEEEE--------EECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred cccc-CCCEEEEEeCCCCeEEEEECCCCcEEEE--------EecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCC
Confidence 3443 5677899999999999999988653111 1111112467899999888776666 5899999999999
Q ss_pred cEEEEEcccC-----CCCeEEEEEcCCCCcEEEEEeCC------------CeEEEEECCCCCcc-ceEEccCCCCeEEEE
Q 003822 583 RRLQVFADMH-----KEHINVVKFSNHSPSIFATSSFD------------QDVKLWDLRQKPIQ-PCYTASSSKGNVMVC 644 (793)
Q Consensus 583 ~~l~~~~~gh-----~~~V~sv~fspdg~~~LaTgs~D------------g~IrIWDlrt~~~~-~~~~l~~~~~~vsv~ 644 (793)
+.+..+..++ ...+..++|+|+| +++++++.+ +.|.+||+.+++.. .+.....+..+.+++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~ 154 (349)
T 1jmx_B 76 KNTFHANLSSVPGEVGRSMYSFAISPDG-KEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMR 154 (349)
T ss_dssp EEEEEEESCCSTTEEEECSSCEEECTTS-SEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEE
T ss_pred cEEEEEEcccccccccccccceEECCCC-CEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCccccee
Confidence 9888776322 2337889999999 777777755 89999999874321 222333344555689
Q ss_pred EecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCC-------------------------------------------
Q 003822 645 FSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATG------------------------------------------- 681 (793)
Q Consensus 645 fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~------------------------------------------- 681 (793)
|+|+|+ +++++ +.|.+||+.+++....+......
T Consensus 155 ~s~dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 231 (349)
T 1jmx_B 155 AADDGS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADL 231 (349)
T ss_dssp ECTTSC-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEE
T ss_pred ECCCCc-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCcccccc
Confidence 999999 66654 34999999999887666432100
Q ss_pred ----------------------CCCcEEEEEee-CCCeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCCCCccceeeec
Q 003822 682 ----------------------SSQNYTRSYYL-NGRDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKGSGTSMFVQSL 738 (793)
Q Consensus 682 ----------------------~~~v~s~afsp-dg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl 738 (793)
...+..++++| +|+ +++++ ++.| .+||+.+++.+. .+....
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~-~l~~~--~~~v-~~~d~~~~~~~~--~~~~~~---------- 295 (349)
T 1jmx_B 232 LYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPN-QIYGV--LNRL-AKYDLKQRKLIK--AANLDH---------- 295 (349)
T ss_dssp EEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTT-EEEEE--ESEE-EEEETTTTEEEE--EEECSS----------
T ss_pred ceeEEEEeccCCcEEecccccCCCcceeeEecCCCCC-EEEEE--cCeE-EEEECccCeEEE--EEcCCC----------
Confidence 01234556778 888 77776 7788 999999999887 443221
Q ss_pred cCCccccCCccEEEEEEcCCCCceeeEeeEEEeCCCcEEEEcCCCC
Q 003822 739 RGDPFRDFNMSILAAYTRPSSKSEIVKVNLLASTDHCDKECSHGQH 784 (793)
Q Consensus 739 ~g~~~~~h~~~V~sva~~P~~~~~iv~~~ltaS~Dg~VkvW~~~~~ 784 (793)
.+.+++|+|++. .++ +++.++.|++|+....
T Consensus 296 ----------~~~~~~~s~dg~-~l~----~~~~~~~v~v~d~~~~ 326 (349)
T 1jmx_B 296 ----------TYYCVAFDKKGD-KLY----LGGTFNDLAVFNPDTL 326 (349)
T ss_dssp ----------CCCEEEECSSSS-CEE----EESBSSEEEEEETTTT
T ss_pred ----------CccceEECCCCC-EEE----EecCCCeEEEEecccc
Confidence 245789999643 344 5677899999998654
No 157
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.71 E-value=4.3e-16 Score=170.72 Aligned_cols=291 Identities=11% Similarity=0.049 Sum_probs=183.1
Q ss_pred EEEEeCCCCCEEEEEeC-CC--eEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCc
Q 003822 458 QFEYHPSISCLMVFGTL-DG--EIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS 534 (793)
Q Consensus 458 ~vafsP~d~~~Lasgs~-DG--~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~ 534 (793)
..+|+| +++.|+.++. +| .|.+||+.+++...... ++...+..+.|+ ++++.|+.++.++.|.+||+.+++..
T Consensus 40 ~~~~Sp-Dg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~--~~~~~~~~~~~s-pdg~~l~~~~~~~~l~~~d~~~g~~~ 115 (388)
T 3pe7_A 40 QKCFTR-DGSKLLFGGAFDGPWNYYLLDLNTQVATQLTE--GRGDNTFGGFLS-PDDDALFYVKDGRNLMRVDLATLEEN 115 (388)
T ss_dssp SCCBCT-TSCEEEEEECTTSSCEEEEEETTTCEEEECCC--SSCBCSSSCEEC-TTSSEEEEEETTTEEEEEETTTCCEE
T ss_pred CccCCC-CCCEEEEEEcCCCCceEEEEeCCCCceEEeee--CCCCCccceEEc-CCCCEEEEEeCCCeEEEEECCCCcce
Confidence 367999 9999998887 67 48888999888765543 455555567787 89999999999999999999987642
Q ss_pred ccccccCCceeEecCCCCeEEE--EEccCCCEEEEEE----------------------CCCcEEEEECCCCcEEEEEcc
Q 003822 535 IRGMHYGAGTVTFDEFDQLTSV--HVNSMDELFLASG----------------------YSKNIALYDINSGRRLQVFAD 590 (793)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~V~sv--~~s~~~~~lla~g----------------------~Dg~I~IWDl~tg~~l~~~~~ 590 (793)
... ..+...+... .+++++..++... .+..|.+||+.+++......
T Consensus 116 ~~~---------~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~- 185 (388)
T 3pe7_A 116 VVY---------QVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQ- 185 (388)
T ss_dssp EEE---------ECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEE-
T ss_pred eee---------echhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeec-
Confidence 111 1111222222 3356666665432 34679999999987655444
Q ss_pred cCCCCeEEEEEcC-CCCcEEEEEeCC------CeEEEEECCCCCccceEEccCCC--CeEEEEEecCCCEEEEEeC-CC-
Q 003822 591 MHKEHINVVKFSN-HSPSIFATSSFD------QDVKLWDLRQKPIQPCYTASSSK--GNVMVCFSPDDHYLLVSAV-DN- 659 (793)
Q Consensus 591 gh~~~V~sv~fsp-dg~~~LaTgs~D------g~IrIWDlrt~~~~~~~~l~~~~--~~vsv~fSpdg~~Lasgs~-Dg- 659 (793)
+...+..++|+| +| ..++..+.+ ..|.++|...+....+. .... ....+.|+|||+.|+..+. ++
T Consensus 186 -~~~~~~~~~~sp~dg-~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~--~~~~~~~~~~~~~spdg~~l~~~~~~~~~ 261 (388)
T 3pe7_A 186 -ENQWLGHPIYRPYDD-STVAFCHEGPHDLVDARMWLINEDGTNMRKVK--THAEGESCTHEFWVPDGSALVYVSYLKGS 261 (388)
T ss_dssp -ESSCEEEEEEETTEE-EEEEEEECSCTTTSSCSEEEEETTSCCCEESC--CCCTTEEEEEEEECTTSSCEEEEEEETTC
T ss_pred -CCccccccEECCCCC-CEEEEEEecCCCCCcceEEEEeCCCCceEEee--eCCCCcccccceECCCCCEEEEEecCCCC
Confidence 667899999999 88 677766653 36888888765433221 2221 2335899999998866543 22
Q ss_pred ---eEEEEEcCCCcEEEEEeeecCCC---CCcEEEEEeeCCCeEEEEE--------eCCCcEEEEEEcCCCcEEEeeeec
Q 003822 660 ---EVRQLLAVDGRVHLNFGITATGS---SQNYTRSYYLNGRDYIVSG--------SCDEHVVRICCAQTGRRLRDISLE 725 (793)
Q Consensus 660 ---~I~IwDl~tg~~~~~l~~~~~~~---~~v~s~afspdg~~~L~Sg--------s~Dg~II~IWDv~tg~~l~~~~L~ 725 (793)
.|++||+.+++....... .... .......|+|||+.++++. ..+..| ++||+.+++.. .+.
T Consensus 262 ~~~~l~~~d~~~g~~~~l~~~-~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i-~~~d~~~~~~~---~l~ 336 (388)
T 3pe7_A 262 PDRFIYSADPETLENRQLTSM-PACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFL-YVFNMKNGTQH---RVA 336 (388)
T ss_dssp CCEEEEEECTTTCCEEEEEEE-CCEEEEEECTTSSEEEEEECCC------------CCCCEE-EEEETTTTEEE---EEE
T ss_pred CcceEEEEecCCCceEEEEcC-CCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEE-EEEeccCCceE---Eec
Confidence 399999999875332221 1100 0011136999998333332 445577 99999988754 343
Q ss_pred CCCCCccceeeeccCCccccCCccEEEEEEcCCCCceeeEeeEEEeCCCcEEEEcCCC
Q 003822 726 GKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKSEIVKVNLLASTDHCDKECSHGQ 783 (793)
Q Consensus 726 gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~~~~iv~~~ltaS~Dg~VkvW~~~~ 783 (793)
.+... +. .+. .+....+..++|+|++...++ ++..+|...+|..+.
T Consensus 337 ~~~~~---~~-~~~----~~~~~~~~~~~~spDg~~l~~----~s~~~g~~~l~~~~l 382 (388)
T 3pe7_A 337 RHDTS---WK-VFE----GDRQVTHPHPSFTPDDKQILF----TSDVHGKPALYLATL 382 (388)
T ss_dssp ECCCC---CC-CBT----TBSSTTCCCCEECTTSSEEEE----EECTTSSCEEEEEEC
T ss_pred cccCc---cc-ccc----cccccCCCCccCCCCCCEEEE----EecCCCceeEEEEEC
Confidence 33310 00 000 011113567899998665444 566788888887643
No 158
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.71 E-value=9.8e-17 Score=191.63 Aligned_cols=280 Identities=10% Similarity=0.017 Sum_probs=184.3
Q ss_pred EEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCC---CEEEEEEeeCCCCEEEEEEc---------CCcEEE
Q 003822 458 QFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMN---SVLGLCWLKKYPSKLIAGSD---------NGSLKL 525 (793)
Q Consensus 458 ~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~---~V~sv~fs~~~g~~Lasgs~---------DgtV~v 525 (793)
.++|+| ++.+++ .+.||+|++||+.+++....+. +|.. .+.+++|+ ++|++|++++. ++.|++
T Consensus 20 ~~~~s~-dg~~~~-~~~d~~i~~~~~~~g~~~~~~~--~~~~~~~~~~~~~~S-pDg~~la~~~~~~~~~~~s~~~~i~~ 94 (719)
T 1z68_A 20 FPNWIS-GQEYLH-QSADNNIVLYNIETGQSYTILS--NRTMKSVNASNYGLS-PDRQFVYLESDYSKLWRYSYTATYYI 94 (719)
T ss_dssp CCEESS-SSEEEE-ECTTSCEEEEESSSCCEEEEEC--HHHHHTTTCSEEEEC-TTSSEEEEEEEEEECSSSCEEEEEEE
T ss_pred ccEECC-CCeEEE-EcCCCCEEEEEcCCCcEEEEEc--cccccccceeeEEEC-CCCCeEEEEecCceeEEeecceEEEE
Confidence 578999 775554 4569999999999998776664 3322 48899998 89999998876 789999
Q ss_pred EEcCCCCCcc-cccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCCe--------
Q 003822 526 YDIRHMPPSI-RGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHI-------- 596 (793)
Q Consensus 526 WDl~~~~~~~-~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V-------- 596 (793)
||+.+++... ..+ ...+..++|+|++..++.+. ++.|++||+.+++.......++...|
T Consensus 95 ~d~~~g~~~~~~~l-----------~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v 162 (719)
T 1z68_A 95 YDLSNGEFVRGNEL-----------PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWV 162 (719)
T ss_dssp EETTTTEECCSSCC-----------CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHH
T ss_pred EECCCCccccceec-----------CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccce
Confidence 9998865310 101 14578899999998888775 78999999998877654333343333
Q ss_pred ---------EEEEEcCCCCcEEEEEeCCC----------------------------------eEEEEECCCCCccceEE
Q 003822 597 ---------NVVKFSNHSPSIFATSSFDQ----------------------------------DVKLWDLRQKPIQPCYT 633 (793)
Q Consensus 597 ---------~sv~fspdg~~~LaTgs~Dg----------------------------------~IrIWDlrt~~~~~~~~ 633 (793)
.+++|+||| +.|++++.|. .|++||+.+++......
T Consensus 163 ~~ee~~~~~~~~~wSPDG-~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~ 241 (719)
T 1z68_A 163 YEEEMLATKYALWWSPNG-KFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQE 241 (719)
T ss_dssp HHHHTTCSSCCEEECTTS-SEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEE
T ss_pred eeeecccCcccEEECCCC-CEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeE
Confidence 489999999 7888877652 78999998864320011
Q ss_pred ------ccCCCCeE-EEEEecCCCEEEEEeCC----CeEEEEE----cCCCcEEEEEe-eecCCCCCcE-----EEEEee
Q 003822 634 ------ASSSKGNV-MVCFSPDDHYLLVSAVD----NEVRQLL----AVDGRVHLNFG-ITATGSSQNY-----TRSYYL 692 (793)
Q Consensus 634 ------l~~~~~~v-sv~fSpdg~~Lasgs~D----g~I~IwD----l~tg~~~~~l~-~~~~~~~~v~-----s~afsp 692 (793)
+.++...+ .++|+|||+.+++.... ..|.+|| +.+++....+. ....+...+. ...|+|
T Consensus 242 ~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sp 321 (719)
T 1z68_A 242 VPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSY 321 (719)
T ss_dssp CCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECT
T ss_pred ccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECC
Confidence 22344444 59999998877775432 2488899 77776532221 0012223333 678999
Q ss_pred CCCeEEE-EEeCCC--cEEEEEEcCCCcEEEeeeecCCCCCccceeeeccCCccccCCccEEEEEEcCCCCceeeEeeEE
Q 003822 693 NGRDYIV-SGSCDE--HVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKSEIVKVNLL 769 (793)
Q Consensus 693 dg~~~L~-Sgs~Dg--~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~~~~iv~~~lt 769 (793)
||+.+++ ++..+| .+ ++||+.+++. . .+.++. ..|..+.+. ++...++ +
T Consensus 322 dg~~l~~~~~~~~g~~~l-~~~~~~~~~~-~--~lt~~~-------------------~~v~~~~~~-d~~~i~~----~ 373 (719)
T 1z68_A 322 DAISYYKIFSDKDGYKHI-HYIKDTVENA-I--QITSGK-------------------WEAINIFRV-TQDSLFY----S 373 (719)
T ss_dssp TSSCEEEEEECTTSCEEE-EEESSCSTTC-E--ECSCSS-------------------SCEEEEEEE-CSSEEEE----E
T ss_pred CCCeEEEEEEccCCceEE-EEEECCCCce-E--ecccCc-------------------eEEEEEEEE-eCCEEEE----E
Confidence 9985444 344555 45 7777777663 2 333222 245565655 4443333 4
Q ss_pred EeC----CCcEEEEcCCC
Q 003822 770 AST----DHCDKECSHGQ 783 (793)
Q Consensus 770 aS~----Dg~VkvW~~~~ 783 (793)
++. ++.+++|..+.
T Consensus 374 ~~~~~~~~~~~~l~~~~~ 391 (719)
T 1z68_A 374 SNEFEEYPGRRNIYRISI 391 (719)
T ss_dssp ESCGGGCTTCBEEEEEEC
T ss_pred EecCCCCCceEEEEEEeC
Confidence 544 58889998653
No 159
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.70 E-value=1.2e-15 Score=190.61 Aligned_cols=275 Identities=10% Similarity=0.096 Sum_probs=202.5
Q ss_pred eEEEEEe-CCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCC-CEEEEEEeeCCCCEEEEEEcCCcEE-EEEcCCCC
Q 003822 456 PRQFEYH-PSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMN-SVLGLCWLKKYPSKLIAGSDNGSLK-LYDIRHMP 532 (793)
Q Consensus 456 V~~vafs-P~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~-~V~sv~fs~~~g~~Lasgs~DgtV~-vWDl~~~~ 532 (793)
+.+++|+ | +++.|++++ ++.|.+|++.+++... + ..|.. .+..++|+ +++.+++++.++.+. +||+.++.
T Consensus 298 v~~~~~S~p-dG~~la~~~-~~~i~~~~~~~~~~~~-~--~~~~~~~~~~~~~s--dg~~l~~~s~~~~l~~~~d~~~~~ 370 (1045)
T 1k32_A 298 KFAEDFSPL-DGDLIAFVS-RGQAFIQDVSGTYVLK-V--PEPLRIRYVRRGGD--TKVAFIHGTREGDFLGIYDYRTGK 370 (1045)
T ss_dssp GGEEEEEEC-GGGCEEEEE-TTEEEEECTTSSBEEE-C--SCCSCEEEEEECSS--SEEEEEEEETTEEEEEEEETTTCC
T ss_pred cceeeecCC-CCCEEEEEE-cCEEEEEcCCCCceEE-c--cCCCcceEEeeeEc--CCCeEEEEECCCceEEEEECCCCC
Confidence 7889999 9 888898888 8899999998877543 3 26666 89999996 888999998888888 88987754
Q ss_pred CcccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEE
Q 003822 533 PSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATS 612 (793)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTg 612 (793)
.. .+. .+...+..++|+|++..+++++.++.|++||+.+++...... +|.+.+.+++|+|+| ++|+++
T Consensus 371 ~~---------~l~-~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~-~~~~~v~~~~~SpDG-~~la~~ 438 (1045)
T 1k32_A 371 AE---------KFE-ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIER-SREAMITDFTISDNS-RFIAYG 438 (1045)
T ss_dssp EE---------ECC-CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSSCCCCEEECTTS-CEEEEE
T ss_pred ce---------Eec-CCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEecc-CCCCCccceEECCCC-CeEEEE
Confidence 31 111 334678999999999999999999999999999999888776 599999999999999 777777
Q ss_pred eCCC----------eEEEEECCCCCccceEEccCCCC-eEEEEEecCCCEEEEEeCCCeEEEEEcCCCcE-------EEE
Q 003822 613 SFDQ----------DVKLWDLRQKPIQPCYTASSSKG-NVMVCFSPDDHYLLVSAVDNEVRQLLAVDGRV-------HLN 674 (793)
Q Consensus 613 s~Dg----------~IrIWDlrt~~~~~~~~l~~~~~-~vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~-------~~~ 674 (793)
+.++ .|++||+.+++ ...+..+.. ...++|+|||++|+.++.++...+|+...... +..
T Consensus 439 ~~~~~~~~~~~~~~~i~l~d~~~g~---~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 515 (1045)
T 1k32_A 439 FPLKHGETDGYVMQAIHVYDMEGRK---IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFV 515 (1045)
T ss_dssp EEECSSTTCSCCEEEEEEEETTTTE---EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEE
T ss_pred ecCccccccCCCCCeEEEEECCCCc---EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhccccccccCceeEE
Confidence 6644 89999998863 344444443 44699999999999999888777776543322 110
Q ss_pred Eee---------------------------------ecCCCCCcEEEEEeeCCCeEEEE-------------EeCCCcEE
Q 003822 675 FGI---------------------------------TATGSSQNYTRSYYLNGRDYIVS-------------GSCDEHVV 708 (793)
Q Consensus 675 l~~---------------------------------~~~~~~~v~s~afspdg~~~L~S-------------gs~Dg~II 708 (793)
+.. ...+...+..++++|+|. ++++ ...+..+
T Consensus 516 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~-~~~~~~~~g~~~~~~~~~~~~~~l- 593 (1045)
T 1k32_A 516 IPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSI-LIYSVPVHGEFAAYYQGAPEKGVL- 593 (1045)
T ss_dssp EESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEE-EEEECCCCCSHHHHHHCCCCCEEE-
T ss_pred EEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCe-EEEEecccCcccccccccCCCceE-
Confidence 000 011234567788999997 5664 1223466
Q ss_pred EEEEcCCCcEEEeeeecCCCCCccceeeeccCCccccCCccEEEEEEcCCCCceeeEeeEEEeCCCcEEEEcCCCCC
Q 003822 709 RICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKSEIVKVNLLASTDHCDKECSHGQHS 785 (793)
Q Consensus 709 ~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~~~~iv~~~ltaS~Dg~VkvW~~~~~~ 785 (793)
++||+.+++... +. ..|.+++++|++.. ++ +++.| .|++|+.....
T Consensus 594 ~~~d~~~~~~~~---l~----------------------~~v~~~~~S~DG~~-l~----~~~~~-~i~~~d~~~~~ 639 (1045)
T 1k32_A 594 LKYDVKTRKVTE---VK----------------------NNLTDLRLSADRKT-VM----VRKDD-GKIYTFPLEKP 639 (1045)
T ss_dssp EEEETTTCCEEE---EE----------------------EEEEEEEECTTSCE-EE----EEETT-SCEEEEESSCT
T ss_pred EEEECCCCcEEE---ee----------------------cCcceEEECCCCCE-EE----EEcCC-cEEEEeCccCc
Confidence 889998887543 11 14778899997543 33 45555 79999986554
No 160
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.69 E-value=2.1e-15 Score=165.46 Aligned_cols=249 Identities=7% Similarity=0.008 Sum_probs=167.9
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECC-CCeEEEEEeccCCCCCEEEEEEeeCCCCE--EEEEE-------------c
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHE-NENIVSYIPSFGAMNSVLGLCWLKKYPSK--LIAGS-------------D 519 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~-t~~~i~~l~~~~h~~~V~sv~fs~~~g~~--Lasgs-------------~ 519 (793)
+..++|+| ++++|++++.+ .|.+|++. +++.........+ +.+..++|+ +++++ +++++ .
T Consensus 42 ~~~~a~sp-dg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~-g~~~~~~~s-pdg~~l~~~~~~~~~~~~~~~~~~~~ 117 (365)
T 1jof_A 42 ISWMTFDH-ERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG-GHPRANDAD-TNTRAIFLLAAKQPPYAVYANPFYKF 117 (365)
T ss_dssp CSEEEECT-TSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC-SSGGGGCTT-SCCEEEEEEECSSTTCCEEEEEESSS
T ss_pred CcEEEECC-CCCEEEEEccc-eEEEEEECCCCCEEEeeEeecC-CCCccEEEC-CCCCEEEEEEecCCcceeccceeecC
Confidence 67899999 89999998887 99999997 7776543332111 234457776 78874 44553 6
Q ss_pred CCcEEEEEcCC-CCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEEC-CCcEEEEECC-CCcEE--EEEcc-cCC
Q 003822 520 NGSLKLYDIRH-MPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY-SKNIALYDIN-SGRRL--QVFAD-MHK 593 (793)
Q Consensus 520 DgtV~vWDl~~-~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~-Dg~I~IWDl~-tg~~l--~~~~~-gh~ 593 (793)
+|++.+|++.. ++.. .... .....+...+.+++|+|++..++++.. ++.|++||+. +++.. ..+.. .|.
T Consensus 118 ~g~v~v~~~~~~g~~~-~~~~----~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g 192 (365)
T 1jof_A 118 AGYGNVFSVSETGKLE-KNVQ----NYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPG 192 (365)
T ss_dssp CCEEEEEEECTTCCEE-EEEE----EEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTT
T ss_pred CceEEEEccCCCCcCc-ceEe----eEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCC
Confidence 89999999974 3321 1100 001123456899999999988887764 6899999998 77653 33331 145
Q ss_pred CCeEEEEEcCCCCcEEEEEeC-CCeEEEEECC--CCCccc----eEEccC----CC-------CeEEEE-EecCCCEEEE
Q 003822 594 EHINVVKFSNHSPSIFATSSF-DQDVKLWDLR--QKPIQP----CYTASS----SK-------GNVMVC-FSPDDHYLLV 654 (793)
Q Consensus 594 ~~V~sv~fspdg~~~LaTgs~-Dg~IrIWDlr--t~~~~~----~~~l~~----~~-------~~vsv~-fSpdg~~Las 654 (793)
..+..++|+|+| +++++++. ++.|.+|++. +++... +..++. +. .+..++ |+|||++|++
T Consensus 193 ~~p~~~~~spdg-~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v 271 (365)
T 1jof_A 193 DHPRWVAMHPTG-NYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFA 271 (365)
T ss_dssp CCEEEEEECTTS-SEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEE
T ss_pred CCCCEeEECCCC-CEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEE
Confidence 679999999999 67666664 7899999875 343221 112222 12 244699 9999999988
Q ss_pred EeCC-C-----eEEEEEcC-CCcEEEEEeeecCCCCCcEEEEEee---CCCeEEEEEeCC-CcEEEEEEcCCC
Q 003822 655 SAVD-N-----EVRQLLAV-DGRVHLNFGITATGSSQNYTRSYYL---NGRDYIVSGSCD-EHVVRICCAQTG 716 (793)
Q Consensus 655 gs~D-g-----~I~IwDl~-tg~~~~~l~~~~~~~~~v~s~afsp---dg~~~L~Sgs~D-g~II~IWDv~tg 716 (793)
++.+ + .|.+|++. +|+..............+..++|+| +|+ +|++++.+ +.| ++|++...
T Consensus 272 ~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~-~l~v~~~~~~~v-~v~~~~~~ 342 (365)
T 1jof_A 272 SSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDE-WMAITDDQEGWL-EIYRWKDE 342 (365)
T ss_dssp EEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTT-EEEEECSSSCEE-EEEEEETT
T ss_pred ECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCC-EEEEEEcCCCeE-EEEEEchh
Confidence 7643 2 89999996 6765432211112233455788999 788 88887765 788 99999876
No 161
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.68 E-value=5.4e-15 Score=162.14 Aligned_cols=280 Identities=9% Similarity=0.090 Sum_probs=175.3
Q ss_pred EEEEEeCC--CeEEEEEC--CCCeEEEEEec-cCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcC-CCCCcccccccC
Q 003822 468 LMVFGTLD--GEIVVVNH--ENENIVSYIPS-FGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIR-HMPPSIRGMHYG 541 (793)
Q Consensus 468 ~Lasgs~D--G~I~VWd~--~t~~~i~~l~~-~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~-~~~~~~~~~~~~ 541 (793)
.+++|+.. +.|.+|++ .+++....-.. .+....+..++|+ +++++|++++.+ .|.+|++. +++... ..
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~s-pdg~~l~~~~~~-~v~~~~~~~~g~~~~--~~-- 77 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFD-HERKNIYGAAMK-KWSSFAVKSPTEIVH--EA-- 77 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEEC-TTSSEEEEEEBT-EEEEEEEEETTEEEE--EE--
T ss_pred EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEEC-CCCCEEEEEccc-eEEEEEECCCCCEEE--ee--
Confidence 45666653 56877764 56654322111 1233467789997 789999999888 99999997 543211 00
Q ss_pred CceeEecCCCCeEEEEEccCCCE-EE-EE--------E-----CCCcEEEEECC-CCcEEEEEc---ccCCCCeEEEEEc
Q 003822 542 AGTVTFDEFDQLTSVHVNSMDEL-FL-AS--------G-----YSKNIALYDIN-SGRRLQVFA---DMHKEHINVVKFS 602 (793)
Q Consensus 542 ~~~~~~~~~~~V~sv~~s~~~~~-ll-a~--------g-----~Dg~I~IWDl~-tg~~l~~~~---~gh~~~V~sv~fs 602 (793)
.....+.+.+++++|++.. ++ ++ + .+|.+.+|++. .++....+. ..+...+.+++|+
T Consensus 78 ----~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s 153 (365)
T 1jof_A 78 ----SHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFD 153 (365)
T ss_dssp ----EEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEEC
T ss_pred ----EeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEEC
Confidence 0111122445778788774 33 33 2 58999999997 466544433 1245679999999
Q ss_pred CCCCcEEEEEe-CCCeEEEEECC-CCCccceEEcc--C-CCCeEEEEEecCCCEEEEEeC-CCeEEEEEcC--CCcEEE-
Q 003822 603 NHSPSIFATSS-FDQDVKLWDLR-QKPIQPCYTAS--S-SKGNVMVCFSPDDHYLLVSAV-DNEVRQLLAV--DGRVHL- 673 (793)
Q Consensus 603 pdg~~~LaTgs-~Dg~IrIWDlr-t~~~~~~~~l~--~-~~~~vsv~fSpdg~~Lasgs~-Dg~I~IwDl~--tg~~~~- 673 (793)
|+| ++++++. .++.|++||+. +++...+.... . ...+..++|+|+|+++++++. ++.|.+|+.. +|+...
T Consensus 154 pdG-~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~ 232 (365)
T 1jof_A 154 PTE-TYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYT 232 (365)
T ss_dssp TTS-SEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEE
T ss_pred CCC-CEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEc
Confidence 999 6666655 46899999998 66544333332 2 345667999999999988875 6899999865 566532
Q ss_pred --EEeeecCC---CC-------CcEEEE-EeeCCCeEEEEEeCC-C-----cEEEEEEcC-CCcEEEeee-ecCCCCCcc
Q 003822 674 --NFGITATG---SS-------QNYTRS-YYLNGRDYIVSGSCD-E-----HVVRICCAQ-TGRRLRDIS-LEGKGSGTS 732 (793)
Q Consensus 674 --~l~~~~~~---~~-------~v~s~a-fspdg~~~L~Sgs~D-g-----~II~IWDv~-tg~~l~~~~-L~gh~~~~s 732 (793)
.+...+.+ +. .+..++ |+|||+ +|++++.+ + .| .+|++. +|+...... +..+.
T Consensus 233 ~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~-~l~v~~~~~~~~~~~~i-~v~~~~~~g~~~~~~~~~~~~~---- 306 (365)
T 1jof_A 233 HHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGK-YMFASSRANKFELQGYI-AGFKLRDCGSIEKQLFLSPTPT---- 306 (365)
T ss_dssp EEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSS-EEEEEEEESSTTSCCEE-EEEEECTTSCEEEEEEEEECSS----
T ss_pred cceEEcCCCCcCCcccccccccccccEEEECCCCC-EEEEECCCCCCCCCCeE-EEEEECCCCCEEEeeeeeecCC----
Confidence 23222211 12 467889 999999 66655433 2 78 999996 666443101 11111
Q ss_pred ceeeeccCCccccCCccEEEEEEcC---CCCceeeEeeEEEeC-CCcEEEEcCCCC
Q 003822 733 MFVQSLRGDPFRDFNMSILAAYTRP---SSKSEIVKVNLLAST-DHCDKECSHGQH 784 (793)
Q Consensus 733 ~~v~sl~g~~~~~h~~~V~sva~~P---~~~~~iv~~~ltaS~-Dg~VkvW~~~~~ 784 (793)
..+..++|+| +++. ++ +++. +++|++|+.+..
T Consensus 307 ---------------~~~~~~a~sp~~~dg~~-l~----v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 307 ---------------SGGHSNAVSPCPWSDEW-MA----ITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp ---------------CCTTCCCEEECTTCTTE-EE----EECSSSCEEEEEEEETT
T ss_pred ---------------CCcccceecCCCcCCCE-EE----EEEcCCCeEEEEEEchh
Confidence 1233567888 5433 33 5554 589999987544
No 162
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.67 E-value=4.8e-16 Score=185.68 Aligned_cols=292 Identities=10% Similarity=0.024 Sum_probs=185.4
Q ss_pred eEEEEEeCCCCCEEEEEeC---------CCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEE
Q 003822 456 PRQFEYHPSISCLMVFGTL---------DGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLY 526 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~---------DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vW 526 (793)
+.+++|+| |+++|++++. +++|++||+.+++.+..... ...+..++|+ |+|+.|+.+. ++.|++|
T Consensus 62 ~~~~~~Sp-Dg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l---~~~~~~~~~S-PDG~~la~~~-~~~i~~~ 135 (719)
T 1z68_A 62 ASNYGLSP-DRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL---PRPIQYLCWS-PVGSKLAYVY-QNNIYLK 135 (719)
T ss_dssp CSEEEECT-TSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC---CSSBCCEEEC-SSTTCEEEEE-TTEEEEE
T ss_pred eeeEEECC-CCCeEEEEecCceeEEeecceEEEEEECCCCccccceec---CcccccceEC-CCCCEEEEEE-CCeEEEE
Confidence 77899999 9999998876 78999999999876311111 2468889998 7999999886 7899999
Q ss_pred EcCCCCCcccccccCCceeEecCC---------CCeEEEEEccCCCEEEEEECCC-------------------------
Q 003822 527 DIRHMPPSIRGMHYGAGTVTFDEF---------DQLTSVHVNSMDELFLASGYSK------------------------- 572 (793)
Q Consensus 527 Dl~~~~~~~~~~~~~~~~~~~~~~---------~~V~sv~~s~~~~~lla~g~Dg------------------------- 572 (793)
|+.+++.......++...+...+. ....+++|+|++..+++++.|.
T Consensus 136 ~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp 215 (719)
T 1z68_A 136 QRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYP 215 (719)
T ss_dssp SSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECC
T ss_pred eCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCC
Confidence 998876532221221111111111 1225899999999999887542
Q ss_pred ---------cEEEEECCCCcEE--EE------EcccCCCCeEEEEEcCCCCcEEEEEeCC----CeEEEEE----CCCCC
Q 003822 573 ---------NIALYDINSGRRL--QV------FADMHKEHINVVKFSNHSPSIFATSSFD----QDVKLWD----LRQKP 627 (793)
Q Consensus 573 ---------~I~IWDl~tg~~l--~~------~~~gh~~~V~sv~fspdg~~~LaTgs~D----g~IrIWD----lrt~~ 627 (793)
.|++||+.+++.. .. +. +|...+..++|+|++ .++++.... ..|.+|| ..+++
T Consensus 216 ~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~SpD~-~~~~~~~~~~~~~~~l~~~d~~~~~~~g~ 293 (719)
T 1z68_A 216 KAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIA-SSDYYFSWLTWVTDE-RVCLQWLKRVQNVSVLSICDFREDWQTWD 293 (719)
T ss_dssp BTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHH-TSCEEEEEEEESSSS-EEEEEEEESSTTEEEEEEEEECSSSSSEE
T ss_pred CCCCCCCeeEEEEEECCCCCccceeEccCCccCC-CCcceEEEeEEeCCC-eEEEEEeccccCeEEEEEEcccCCCCCCc
Confidence 7889999987753 12 22 488889999999997 777775432 2488899 77664
Q ss_pred ccceEE--ccCCCCeE------EEEEecCCCEEEE--EeCCC--eEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCCC
Q 003822 628 IQPCYT--ASSSKGNV------MVCFSPDDHYLLV--SAVDN--EVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNGR 695 (793)
Q Consensus 628 ~~~~~~--l~~~~~~v------sv~fSpdg~~Las--gs~Dg--~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg~ 695 (793)
...+.. ..++...+ .+.|+|||+.++. +..+| .|.+||+.+++. ..+. .+...+....++ +++
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~-~~lt---~~~~~v~~~~~~-d~~ 368 (719)
T 1z68_A 294 CPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENA-IQIT---SGKWEAINIFRV-TQD 368 (719)
T ss_dssp CCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTC-EECS---CSSSCEEEEEEE-CSS
T ss_pred eEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCce-Eecc---cCceEEEEEEEE-eCC
Confidence 443331 01222221 4789999996654 43455 577778777763 3332 234446666777 887
Q ss_pred eEEEEEeC----CCcEEEEEEcCC--CcE-EEeeeecCCCCCccceeeeccCCccccCCccEEEEEEcCCCCceeeEeeE
Q 003822 696 DYIVSGSC----DEHVVRICCAQT--GRR-LRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKSEIVKVNL 768 (793)
Q Consensus 696 ~~L~Sgs~----Dg~II~IWDv~t--g~~-l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~~~~iv~~~l 768 (793)
.+++++.. ++.. ++|.+.. |.. .. .+.. .+.+|...+..+.|+|++...++
T Consensus 369 ~i~~~~~~~~~~~~~~-~l~~~~~~~g~~~~~--~l~~---------------~~~~~~~~~~~~~~s~dg~~l~~---- 426 (719)
T 1z68_A 369 SLFYSSNEFEEYPGRR-NIYRISIGSYPPSKK--CVTC---------------HLRKERCQYYTASFSDYAKYYAL---- 426 (719)
T ss_dssp EEEEEESCGGGCTTCB-EEEEEECSSSSCCEE--ESST---------------TTTTTTBCBEEEEECGGGSSEEE----
T ss_pred EEEEEEecCCCCCceE-EEEEEeCCCCCCCce--eccC---------------ccCCCCCceEEEEECCCCCEEEE----
Confidence 44445544 4778 8998754 321 12 1111 11223345777889987654443
Q ss_pred EEeCC--CcEEEEcCC
Q 003822 769 LASTD--HCDKECSHG 782 (793)
Q Consensus 769 taS~D--g~VkvW~~~ 782 (793)
.++.+ ..+.+|+..
T Consensus 427 ~~s~~~~p~~~l~d~~ 442 (719)
T 1z68_A 427 VCYGPGIPISTLHDGR 442 (719)
T ss_dssp EECCBSSCEEEEECSS
T ss_pred EcCCCCCCeEEEEECC
Confidence 34333 456677653
No 163
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.67 E-value=9.5e-16 Score=178.69 Aligned_cols=240 Identities=13% Similarity=0.060 Sum_probs=161.7
Q ss_pred CCCEEEEEEeeCCCCEEEEEEc-CCcEEEEEcCCCCCcccccccCCceeEecCC-CCeEEEEEccCCCEEEEEEC---CC
Q 003822 498 MNSVLGLCWLKKYPSKLIAGSD-NGSLKLYDIRHMPPSIRGMHYGAGTVTFDEF-DQLTSVHVNSMDELFLASGY---SK 572 (793)
Q Consensus 498 ~~~V~sv~fs~~~g~~Lasgs~-DgtV~vWDl~~~~~~~~~~~~~~~~~~~~~~-~~V~sv~~s~~~~~lla~g~---Dg 572 (793)
..+|.+++|+ ++|+.||+++. ||+++||++.+++.. .+ ..+. ..+..++|+|+ ..++++.. +.
T Consensus 21 ~~~~~~~~~~-~DG~~la~~s~~~g~~~lw~~~~g~~~--~l--------t~~~~~~~~~~~~spd-~~l~~~~~~~g~~ 88 (582)
T 3o4h_A 21 AVEKYSLQGV-VDGDKLLVVGFSEGSVNAYLYDGGETV--KL--------NREPINSVLDPHYGVG-RVILVRDVSKGAE 88 (582)
T ss_dssp HSCEEEEEEE-ETTTEEEEEEEETTEEEEEEEETTEEE--EC--------CSSCCSEECEECTTCS-EEEEEEECSTTSC
T ss_pred ccchheeecC-CCCCeEEEEEccCCceeEEEEcCCCcE--ee--------ecccccccccccCCCC-eEEEEeccCCCCc
Confidence 4579999998 79999999887 999999998654321 11 1122 46788899876 44444443 35
Q ss_pred cEEEEECCC---CcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEECCCCCccceEEccCCCCeEEEEEecCC
Q 003822 573 NIALYDINS---GRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDD 649 (793)
Q Consensus 573 ~I~IWDl~t---g~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~~~~vsv~fSpdg 649 (793)
...+|.+.. +... .+. ....+...+|+|++...+++++.++.+.+||+.+++...+..... .+++|||||
T Consensus 89 ~~~l~~~~~~~~g~~~-~l~--~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~----~~~~~spDG 161 (582)
T 3o4h_A 89 QHALFKVNTSRPGEEQ-RLE--AVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG----FGFVSDIRG 161 (582)
T ss_dssp CEEEEEEETTSTTCCE-ECT--TSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS----CEEEEEEET
T ss_pred ceEEEEEeccCCCccc-ccc--CCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC----ceEEECCCC
Confidence 456654433 3322 444 223345668888885555555555556699998875444433222 568999999
Q ss_pred CEEEEEeCC----CeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCCCeEEEEEeCCC--cEEEEEEcCCCcEEEeee
Q 003822 650 HYLLVSAVD----NEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNGRDYIVSGSCDE--HVVRICCAQTGRRLRDIS 723 (793)
Q Consensus 650 ~~Lasgs~D----g~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg--~II~IWDv~tg~~l~~~~ 723 (793)
++|++++.+ +.|++||+.+++.. .+. .+...+...+|+|||+ +|+++..++ .| ++||+.+++.. .
T Consensus 162 ~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~---~~~~~~~~~~~SpDG~-~l~~~~~~~~~~i-~~~d~~~~~~~---~ 232 (582)
T 3o4h_A 162 DLIAGLGFFGGGRVSLFTSNLSSGGLR-VFD---SGEGSFSSASISPGMK-VTAGLETAREARL-VTVDPRDGSVE---D 232 (582)
T ss_dssp TEEEEEEEEETTEEEEEEEETTTCCCE-EEC---CSSCEEEEEEECTTSC-EEEEEECSSCEEE-EEECTTTCCEE---E
T ss_pred CEEEEEEEcCCCCeEEEEEcCCCCCce-Eee---cCCCccccceECCCCC-EEEEccCCCeeEE-EEEcCCCCcEE---E
Confidence 999988876 78999999988864 342 3445678899999999 888888888 77 99999998765 3
Q ss_pred ecCCCCCccceeeeccCCccccCCccEEEEEEcCCCCceeeEeeEEEeCCCcEEEEcC
Q 003822 724 LEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKSEIVKVNLLASTDHCDKECSH 781 (793)
Q Consensus 724 L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~~~~iv~~~ltaS~Dg~VkvW~~ 781 (793)
+.+|... +..+.+ .......|+|++ ..++ +++.||++++|..
T Consensus 233 ~~~~~~~----~~~~~~-------~~~~~~~~spdg-~~~~----~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 233 LELPSKD----FSSYRP-------TAITWLGYLPDG-RLAV----VARREGRSAVFID 274 (582)
T ss_dssp CCCSCSH----HHHHCC-------SEEEEEEECTTS-CEEE----EEEETTEEEEEET
T ss_pred ccCCCcC----hhhhhh-------ccccceeEcCCC-cEEE----EEEcCCcEEEEEE
Confidence 4444411 110100 112344599987 5555 8899999999998
No 164
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.64 E-value=6.3e-14 Score=151.60 Aligned_cols=253 Identities=11% Similarity=0.078 Sum_probs=180.9
Q ss_pred eEEEEEeCCCCCEEEEEeCC------------------------CeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCC
Q 003822 456 PRQFEYHPSISCLMVFGTLD------------------------GEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYP 511 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~D------------------------G~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g 511 (793)
|.+++++| +++++++...+ ++|.+||..+++....+. .++-.....+++. +++
T Consensus 26 v~~va~d~-~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~-~~~~~~p~gia~d-~~g 102 (329)
T 3fvz_A 26 VSGVALDS-KNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSG-KNLFYLPHGLSID-TDG 102 (329)
T ss_dssp EEEEEECT-TCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEEC-TTTCSSEEEEEEC-TTS
T ss_pred ceEEEECC-CCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccC-CCccCCceEEEEC-CCC
Confidence 89999999 88999888877 479999999898876553 2455678999997 788
Q ss_pred CEEEEEEcCCcEEEEEcCCCCCcccccccCC-ceeEecCCCCeEEEEEcc-CCCEEEEEE-CCCcEEEEECCCCcEEEEE
Q 003822 512 SKLIAGSDNGSLKLYDIRHMPPSIRGMHYGA-GTVTFDEFDQLTSVHVNS-MDELFLASG-YSKNIALYDINSGRRLQVF 588 (793)
Q Consensus 512 ~~Lasgs~DgtV~vWDl~~~~~~~~~~~~~~-~~~~~~~~~~V~sv~~s~-~~~~lla~g-~Dg~I~IWDl~tg~~l~~~ 588 (793)
+++++...++.|++||.......+....... ......+...+.+++++| .+..+++.+ .++.|++|| .+++.+..+
T Consensus 103 ~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~ 181 (329)
T 3fvz_A 103 NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQW 181 (329)
T ss_dssp CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEE
T ss_pred CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEe
Confidence 8888888899999999865421121111000 000011234689999998 455555554 589999999 568877777
Q ss_pred cc---------cCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEECCCCCccceEEccCC-CCeEEEEEecCCCEEEE----
Q 003822 589 AD---------MHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSS-KGNVMVCFSPDDHYLLV---- 654 (793)
Q Consensus 589 ~~---------gh~~~V~sv~fspdg~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~-~~~vsv~fSpdg~~Las---- 654 (793)
.. ++-..+..++++|+++.++++...++.|++||..+++....+..... ..+..++|+| |..+++
T Consensus 182 ~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g~~ 260 (329)
T 3fvz_A 182 GEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVNGKP 260 (329)
T ss_dssp CEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEECCC
T ss_pred ccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEeCCCE
Confidence 41 12234899999999448888888899999999987654443332332 3455689999 433333
Q ss_pred ---EeCCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCC
Q 003822 655 ---SAVDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQT 715 (793)
Q Consensus 655 ---gs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~t 715 (793)
...++.|++||..+++.+..+.....+...+..++++|+|. ++++...+++| ++|++..
T Consensus 261 ~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~-lyvad~~~~~I-~~~~~~~ 322 (329)
T 3fvz_A 261 YFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGT-VYIGDAHTNTV-WKFTLTE 322 (329)
T ss_dssp CTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSE-EEEEESSSCCE-EEEEEEE
T ss_pred EeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCC-EEEEECCCCEE-EEEeCCc
Confidence 23345899999999998887743334556688999999995 88888889999 9998753
No 165
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.64 E-value=1.7e-14 Score=173.46 Aligned_cols=245 Identities=9% Similarity=0.016 Sum_probs=164.8
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCC-----CEEEEEEeeCCCCEEEEEEcC---------C
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMN-----SVLGLCWLKKYPSKLIAGSDN---------G 521 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~-----~V~sv~fs~~~g~~Lasgs~D---------g 521 (793)
...++|+| ++.+++++ ||+|++||+.+++....+. +|.. ....+.|+ ++|++|+.++.+ +
T Consensus 19 ~~~~~w~~-dg~~~~~~--~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~S-pdg~~l~~~~~~~~~~r~~~~~ 92 (740)
T 4a5s_A 19 LYSLRWIS-DHEYLYKQ--ENNILVFNAEYGNSSVFLE--NSTFDEFGHSINDYSIS-PDGQFILLEYNYVKQWRHSYTA 92 (740)
T ss_dssp CCCEEECS-SSEEEEEE--TTEEEEEETTTCCEEEEEC--TTTTTTCCSCCCEEEEC-TTSSEEEEEEEEEECSSSCEEE
T ss_pred ccccEECC-CCcEEEEc--CCcEEEEECCCCceEEEEe--chhhhhhcccccceEEC-CCCCEEEEEECCeeeEEEccce
Confidence 45689999 88888886 9999999999998876665 4432 23447887 899999998876 5
Q ss_pred cEEEEEcCCCCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCCe-----
Q 003822 522 SLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHI----- 596 (793)
Q Consensus 522 tV~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V----- 596 (793)
.+.+||+.+++.. .+. .+...+...+|+|++..++.+ .++.|++||+.+++..+....++...+
T Consensus 93 ~~~~~d~~~~~~~--~l~--------~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~ 161 (740)
T 4a5s_A 93 SYDIYDLNKRQLI--TEE--------RIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGIT 161 (740)
T ss_dssp EEEEEETTTTEEC--CSS--------CCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBC
T ss_pred EEEEEECCCCcEE--Ecc--------cCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEEcCCCCccceecCcc
Confidence 6679999987542 111 123568899999999988776 578999999998875543222333323
Q ss_pred ------------EEEEEcCCCCcEEEEEeCCC------------------------------------eEEEEECCC---
Q 003822 597 ------------NVVKFSNHSPSIFATSSFDQ------------------------------------DVKLWDLRQ--- 625 (793)
Q Consensus 597 ------------~sv~fspdg~~~LaTgs~Dg------------------------------------~IrIWDlrt--- 625 (793)
..+.|+||| +.||.++.|. +|++||+.+
T Consensus 162 ~~v~~ee~~~~~~~~~wSpDg-~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~ 240 (740)
T 4a5s_A 162 DWVYEEEVFSAYSALWWSPNG-TFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSS 240 (740)
T ss_dssp CHHHHHHTSSSSBCEEECTTS-SEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCS
T ss_pred cccccchhcCCCcceEECCCC-CEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCC
Confidence 348999999 7777765321 478889887
Q ss_pred CCccceEEcc------CCCCeE-EEEEecCCCEEEEEeC----CCeEEEEEcCCCc----EE--EEEeeecCCCCC----
Q 003822 626 KPIQPCYTAS------SSKGNV-MVCFSPDDHYLLVSAV----DNEVRQLLAVDGR----VH--LNFGITATGSSQ---- 684 (793)
Q Consensus 626 ~~~~~~~~l~------~~~~~v-sv~fSpdg~~Lasgs~----Dg~I~IwDl~tg~----~~--~~l~~~~~~~~~---- 684 (793)
+.......+. ++...+ .++|+|||+.++.... +..|++||+.+|+ +. ..+. ...+...
T Consensus 241 ~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~-~~~~~~~v~~~ 319 (740)
T 4a5s_A 241 VTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHI-EMSTTGWVGRF 319 (740)
T ss_dssp SSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEE-EECSSSCSSSS
T ss_pred CCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEee-eccCCceEccC
Confidence 6321222222 244444 5999999997766543 2379999999887 21 1110 0112222
Q ss_pred -cEEEEEeeCCCeEEEEEe-CCC--cEEEEEEcCCCcEEE
Q 003822 685 -NYTRSYYLNGRDYIVSGS-CDE--HVVRICCAQTGRRLR 720 (793)
Q Consensus 685 -v~s~afspdg~~~L~Sgs-~Dg--~II~IWDv~tg~~l~ 720 (793)
....+|+|||+.+++..+ .+| .| ++||+.+++...
T Consensus 320 ~~~~p~fspDG~~l~~~~s~~~G~~~l-~~~~~~~~~~~~ 358 (740)
T 4a5s_A 320 RPSEPHFTLDGNSFYKIISNEEGYRHI-CYFQIDKKDCTF 358 (740)
T ss_dssp SCCCCEECTTSSEEEEEEECTTSCEEE-EEEETTCSSCEE
T ss_pred cCCCceEcCCCCEEEEEEEcCCCceEE-EEEECCCCceEe
Confidence 236789999994442555 344 46 888988776654
No 166
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.63 E-value=2.5e-13 Score=142.73 Aligned_cols=242 Identities=13% Similarity=0.155 Sum_probs=172.6
Q ss_pred ceEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEec----cCCCCCEEEEEEeeCCCCEEEEEEc-CCcEEEEEcC
Q 003822 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPS----FGAMNSVLGLCWLKKYPSKLIAGSD-NGSLKLYDIR 529 (793)
Q Consensus 455 ~V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~----~~h~~~V~sv~fs~~~g~~Lasgs~-DgtV~vWDl~ 529 (793)
.+.+++++| ++.++++...++.|.+||.+ ++.+..+.. .++...+.++++.++++.++++... ++.|.+||.
T Consensus 31 ~p~~v~~~~-~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~- 107 (286)
T 1q7f_A 31 EPSGVAVNA-QNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ- 107 (286)
T ss_dssp CEEEEEECT-TCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT-
T ss_pred CCceEEECC-CCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEECC-
Confidence 389999999 88888888889999999987 666655542 1344678999985456666665543 889999994
Q ss_pred CCCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcc-cCCCCeEEEEEcCCCCcE
Q 003822 530 HMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFAD-MHKEHINVVKFSNHSPSI 608 (793)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~-gh~~~V~sv~fspdg~~~ 608 (793)
+++.. ... .......+.++++.+++..+++...++.|.+||.. ++.+..+.. ++...+..++++|+| ++
T Consensus 108 ~g~~~-~~~-------~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g-~l 177 (286)
T 1q7f_A 108 YGQFV-RKF-------GATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQ-EI 177 (286)
T ss_dssp TSCEE-EEE-------CTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSS-EE
T ss_pred CCcEE-EEe-------cCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCC-CE
Confidence 33321 111 01122467899998887766555568999999964 666666642 245678999999998 78
Q ss_pred EEEEeCCCeEEEEECCCCCccceEEccCC---CCeEEEEEecCCCEEEEEeCCC-eEEEEEcCCCcEEEEEeeecCCCCC
Q 003822 609 FATSSFDQDVKLWDLRQKPIQPCYTASSS---KGNVMVCFSPDDHYLLVSAVDN-EVRQLLAVDGRVHLNFGITATGSSQ 684 (793)
Q Consensus 609 LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~---~~~vsv~fSpdg~~Lasgs~Dg-~I~IwDl~tg~~~~~l~~~~~~~~~ 684 (793)
+++...++.|++||.... .+..+... ..+..++++|+|+.+++...++ .|.+||. +++.+..+... .....
T Consensus 178 ~v~~~~~~~i~~~~~~g~---~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~-~~~~~ 252 (286)
T 1q7f_A 178 FISDNRAHCVKVFNYEGQ---YLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESK-VKHAQ 252 (286)
T ss_dssp EEEEGGGTEEEEEETTCC---EEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEES-SCCSC
T ss_pred EEEECCCCEEEEEcCCCC---EEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEccc-CCCCc
Confidence 888888999999998543 22233222 3566799999999888887776 9999995 57776766542 22334
Q ss_pred cEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCc
Q 003822 685 NYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGR 717 (793)
Q Consensus 685 v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~ 717 (793)
+..++++|+|. ++++ +.|++| ++|++....
T Consensus 253 ~~~i~~~~~g~-l~vs-~~~~~v-~v~~~~~~~ 282 (286)
T 1q7f_A 253 CFDVALMDDGS-VVLA-SKDYRL-YIYRYVQLA 282 (286)
T ss_dssp EEEEEEETTTE-EEEE-ETTTEE-EEEECSCCC
T ss_pred ceeEEECCCCc-EEEE-CCCCeE-EEEEccccc
Confidence 67899999997 6666 578899 999986543
No 167
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.61 E-value=5.4e-15 Score=161.75 Aligned_cols=295 Identities=9% Similarity=0.011 Sum_probs=177.3
Q ss_pred eEEEEEeCCCCCEEEEEeCC---CeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCC
Q 003822 456 PRQFEYHPSISCLMVFGTLD---GEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMP 532 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~D---G~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~ 532 (793)
+..++|+| +++.|+.+... ..|.+||+.+++...... ++......+.|+ ++++.|+.++.++.|.+||+.+++
T Consensus 38 ~~~~~~Sp-dG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~--~~~~~~~~~~~s-pdg~~l~~~~~~~~l~~~d~~~~~ 113 (396)
T 3c5m_A 38 FYQKCFTQ-DGKKLLFAGDFDGNRNYYLLNLETQQAVQLTE--GKGDNTFGGFIS-TDERAFFYVKNELNLMKVDLETLE 113 (396)
T ss_dssp TTSCCBCT-TSCEEEEEECTTSSCEEEEEETTTTEEEECCC--SSCBCTTTCEEC-TTSSEEEEEETTTEEEEEETTTCC
T ss_pred eecCcCCC-CCCEEEEEEecCCCceEEEEECCCCcEEEeec--CCCCccccceEC-CCCCEEEEEEcCCcEEEEECCCCC
Confidence 45678999 88888877543 478889998887644322 222222336787 899999999999999999998865
Q ss_pred CcccccccCCce------eEecCCCCeEE-----EEEccCCCEEEEE-----ECCCcEEEEECCCCcEEEEEcccCCCCe
Q 003822 533 PSIRGMHYGAGT------VTFDEFDQLTS-----VHVNSMDELFLAS-----GYSKNIALYDINSGRRLQVFADMHKEHI 596 (793)
Q Consensus 533 ~~~~~~~~~~~~------~~~~~~~~V~s-----v~~s~~~~~lla~-----g~Dg~I~IWDl~tg~~l~~~~~gh~~~V 596 (793)
....... +... +.+........ +.++|++..++.. ..+..|++||+.+++...... +...+
T Consensus 114 ~~~~~~~-~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~--~~~~~ 190 (396)
T 3c5m_A 114 EQVIYTV-DEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQ--DTAWL 190 (396)
T ss_dssp EEEEEEC-CTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEE--ESSCE
T ss_pred cEEEEec-ccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeecc--CCccc
Confidence 4211110 0000 00000000000 2344555554443 345789999999888765554 67789
Q ss_pred EEEEEcC-CCCcEEEEEeCC------CeEEEEECCCCCccceEEccCC-C-CeEEEEEecCCCEEEEEeCC-----CeEE
Q 003822 597 NVVKFSN-HSPSIFATSSFD------QDVKLWDLRQKPIQPCYTASSS-K-GNVMVCFSPDDHYLLVSAVD-----NEVR 662 (793)
Q Consensus 597 ~sv~fsp-dg~~~LaTgs~D------g~IrIWDlrt~~~~~~~~l~~~-~-~~vsv~fSpdg~~Lasgs~D-----g~I~ 662 (793)
..+.|+| ++ ..++..+.+ ..|.+||+.++....+. ... . .+..+.|+|+|++|+.++.+ +.|+
T Consensus 191 ~~~~~sp~dg-~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~--~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~ 267 (396)
T 3c5m_A 191 GHPIYRPFDD-STVGFCHEGPHDLVDARMWLVNEDGSNVRKIK--EHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIY 267 (396)
T ss_dssp EEEEEETTEE-EEEEEEECSCSSSCSCCCEEEETTSCCCEESS--CCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEE
T ss_pred ccceECCCCC-CEEEEEecCCCCCCCceEEEEECCCCceeEee--ccCCCccccceEECCCCCEEEEEecCCCCccceEE
Confidence 9999999 67 556655543 36888998765432221 111 1 23358999999988877644 4499
Q ss_pred EEEcCCCcEEEEEeeecCCCCCcEEEEEee-CCCeEEEEEe----------------CCCcEEEEEEcCCCcEEEeeeec
Q 003822 663 QLLAVDGRVHLNFGITATGSSQNYTRSYYL-NGRDYIVSGS----------------CDEHVVRICCAQTGRRLRDISLE 725 (793)
Q Consensus 663 IwDl~tg~~~~~l~~~~~~~~~v~s~afsp-dg~~~L~Sgs----------------~Dg~II~IWDv~tg~~l~~~~L~ 725 (793)
+||+.+++....... .+ .. ..|+| +|+ ++++++ .++.+ ++||+.+++.. .+.
T Consensus 268 ~~d~~~g~~~~l~~~--~~---~~-~~~s~~dg~-~l~~~~~~~p~~~~~~~~~~~~~~~~i-~~~d~~~~~~~---~l~ 336 (396)
T 3c5m_A 268 KANPETLENEEVMVM--PP---CS-HLMSNFDGS-LMVGDGCDAPVDVADADSYNIENDPFL-YVLNTKAKSAQ---KLC 336 (396)
T ss_dssp EECTTTCCEEEEEEC--CS---EE-EEEECSSSS-EEEEEECCC----------CCCCCCEE-EEEETTTTBCC---EEE
T ss_pred EEECCCCCeEEeeeC--CC---CC-CCccCCCCc-eEEEecCCcceeeccccccccCCCCcE-EEEecccCceE---Ecc
Confidence 999998876433221 11 22 88999 998 666654 23567 99999988753 333
Q ss_pred CCCCCccceeeeccCCccccCCccEEEEEEcCCCCceeeEeeEEEeCCCcEEEEcCCC
Q 003822 726 GKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKSEIVKVNLLASTDHCDKECSHGQ 783 (793)
Q Consensus 726 gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~~~~iv~~~ltaS~Dg~VkvW~~~~ 783 (793)
.+.... ..+.... ...+..++|+|++...++ ++..++...+|..+.
T Consensus 337 ~~~~~~----~~~~~~~----~~~~~~~~~s~dg~~l~~----~s~~~~~~~l~~~~~ 382 (396)
T 3c5m_A 337 KHSTSW----DVLDGDR----QITHPHPSFTPNDDGVLF----TSDFEGVPAIYIADV 382 (396)
T ss_dssp ECCCCC----CCBTTBS----STTCCCCEECTTSSEEEE----EECTTSSCEEEEEEC
T ss_pred CCCCcc----ccccccc----cCCCCCceEccCCCeEEE----EecCCCCceEEEEEE
Confidence 332100 0000000 012445689997654333 455577777877543
No 168
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.59 E-value=3.3e-13 Score=148.32 Aligned_cols=260 Identities=10% Similarity=-0.012 Sum_probs=178.3
Q ss_pred eEEEEEeCCCCCEEEEEe----------CCCeEEEEECCCCeEEEEEeccC----CCCCEEEEEEeeCCCCEEEEEEc--
Q 003822 456 PRQFEYHPSISCLMVFGT----------LDGEIVVVNHENENIVSYIPSFG----AMNSVLGLCWLKKYPSKLIAGSD-- 519 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs----------~DG~I~VWd~~t~~~i~~l~~~~----h~~~V~sv~fs~~~g~~Lasgs~-- 519 (793)
+ .++|+| ++++++++. .++.|.+||..+++.+..+.... +......++++ ++|++|+++..
T Consensus 53 p-~i~~sp-dg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~s-pdg~~l~v~n~~~ 129 (361)
T 2oiz_A 53 G-HVQVSN-DGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQT-TDGKFIVLQNASP 129 (361)
T ss_dssp E-EEEECT-TSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEEC-TTSSEEEEEEESS
T ss_pred C-ceEECC-CCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEEC-CCCCEEEEECCCC
Confidence 5 899999 899888876 36789999999999888876421 22345678887 79999998874
Q ss_pred CCcEEEEEcCCCCCcccccccCCceeEecCCCCeEEEEEccCC-CEEEEEECCCcEEEEECCC-CcEEEEEc-----ccC
Q 003822 520 NGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMD-ELFLASGYSKNIALYDINS-GRRLQVFA-----DMH 592 (793)
Q Consensus 520 DgtV~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~-~~lla~g~Dg~I~IWDl~t-g~~l~~~~-----~gh 592 (793)
+++|.+||+.+++....... . .....+.+.|.+ ..+++.+.||.+.+|+... ++...... ..+
T Consensus 130 ~~~v~v~d~~~~~~~~~~i~---------~-~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~ 199 (361)
T 2oiz_A 130 ATSIGIVDVAKGDYVEDVTA---------A-AGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVK 199 (361)
T ss_dssp SEEEEEEETTTTEEEEEEGG---------G-TTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTT
T ss_pred CCeEEEEECCCCcEEEEEec---------C-CCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCC
Confidence 58999999998643211011 1 112234455655 5677777899999999875 55542211 012
Q ss_pred CCCeEEEEEcCCCCcEEEEEeCCCeEEEEECCCCCccceEEcc--C---------CCCeEEEEEecCCCEEEEEeC----
Q 003822 593 KEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTAS--S---------SKGNVMVCFSPDDHYLLVSAV---- 657 (793)
Q Consensus 593 ~~~V~sv~fspdg~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~--~---------~~~~vsv~fSpdg~~Lasgs~---- 657 (793)
..++ .+.+.|++ ..++..+.++.|.++|+............ . ..+...++|+|+++.++++..
T Consensus 200 ~~~~-~~~~~~~g-~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~ 277 (361)
T 2oiz_A 200 DDPI-FIAPALDK-DKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGK 277 (361)
T ss_dssp TSCB-CSCCEECS-SEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCC
T ss_pred CCce-EEEecccC-CEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCC
Confidence 2222 23346676 56666778999999999765322221111 0 011112789999998888753
Q ss_pred -------CCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCC--cEEEeeeecCCC
Q 003822 658 -------DNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTG--RRLRDISLEGKG 728 (793)
Q Consensus 658 -------Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg--~~l~~~~L~gh~ 728 (793)
.+.|.+||+.+++.+.++.. + . +..++|+|+|+ +|++++. +.| .+||..++ +.++ ++.+..
T Consensus 278 ~~~~~~~~~~v~viD~~t~~~v~~i~~---~-~-p~~ia~spdg~-~l~v~n~-~~v-~v~D~~t~~l~~~~--~i~~~G 347 (361)
T 2oiz_A 278 EGTHKFPAAEIWVMDTKTKQRVARIPG---R-D-ALSMTIDQQRN-LMLTLDG-GNV-NVYDISQPEPKLLR--TIEGAA 347 (361)
T ss_dssp TTCTTCCCSEEEEEETTTTEEEEEEEC---T-T-CCEEEEETTTT-EEEEECS-SCE-EEEECSSSSCEEEE--EETTSC
T ss_pred cccccCCCceEEEEECCCCcEEEEEec---C-C-eeEEEECCCCC-EEEEeCC-CeE-EEEECCCCcceeeE--EeccCC
Confidence 35899999999999888863 3 3 88999999999 8887776 889 99999999 8888 553332
Q ss_pred CCccceeeeccCCccccCCccEEEEEEcCCC
Q 003822 729 SGTSMFVQSLRGDPFRDFNMSILAAYTRPSS 759 (793)
Q Consensus 729 ~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~ 759 (793)
.....++++|++
T Consensus 348 -------------------~~P~~~~~~p~G 359 (361)
T 2oiz_A 348 -------------------EASLQVQFHPVG 359 (361)
T ss_dssp -------------------SSEEEEEECCCS
T ss_pred -------------------CCcEEEEecCCC
Confidence 135678888875
No 169
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.57 E-value=2.8e-12 Score=134.68 Aligned_cols=250 Identities=14% Similarity=0.120 Sum_probs=172.4
Q ss_pred CCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEEC--CCc
Q 003822 496 GAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY--SKN 573 (793)
Q Consensus 496 ~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~--Dg~ 573 (793)
++-..+.++++. ++++++++...++.|.+||... +. ........ ....+...+.++++.+.++.++++.. ++.
T Consensus 27 g~~~~p~~v~~~-~~g~l~v~~~~~~~i~~~d~~g-~~-~~~~~~~~--~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~ 101 (286)
T 1q7f_A 27 GQFTEPSGVAVN-AQNDIIVADTNNHRIQIFDKEG-RF-KFQFGECG--KRDSQLLYPNRVAVVRNSGDIIVTERSPTHQ 101 (286)
T ss_dssp TCBSCEEEEEEC-TTCCEEEEEGGGTEEEEECTTS-CE-EEEECCBS--SSTTCBSSEEEEEEETTTTEEEEEECGGGCE
T ss_pred CccCCCceEEEC-CCCCEEEEECCCCEEEEECCCC-cE-EEEecccC--CCcccccCceEEEEEcCCCeEEEEcCCCCCE
Confidence 455678999986 6788888888899999999773 22 11111000 00012245789999655666666663 799
Q ss_pred EEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEECCCCCccceEEccC-CCCeEEEEEecCCCEE
Q 003822 574 IALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASS-SKGNVMVCFSPDDHYL 652 (793)
Q Consensus 574 I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~-~~~~vsv~fSpdg~~L 652 (793)
|.+|| .+++.+..+...+...+.+++++|+| +++++...++.|.+||.... ....+.... ...+..++++|+|+.+
T Consensus 102 i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~~g~-~~~~~~~~~~~~~p~~i~~~~~g~l~ 178 (286)
T 1q7f_A 102 IQIYN-QYGQFVRKFGATILQHPRGVTVDNKG-RIIVVECKVMRVIIFDQNGN-VLHKFGCSKHLEFPNGVVVNDKQEIF 178 (286)
T ss_dssp EEEEC-TTSCEEEEECTTTCSCEEEEEECTTS-CEEEEETTTTEEEEECTTSC-EEEEEECTTTCSSEEEEEECSSSEEE
T ss_pred EEEEC-CCCcEEEEecCccCCCceEEEEeCCC-CEEEEECCCCEEEEEcCCCC-EEEEeCCCCccCCcEEEEECCCCCEE
Confidence 99999 66887777754455678999999998 78888888899999996542 222222222 2345679999999977
Q ss_pred EEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCCCeEEEEEeCCC-cEEEEEEcCCCcEEEeeeecCCCCCc
Q 003822 653 LVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNGRDYIVSGSCDE-HVVRICCAQTGRRLRDISLEGKGSGT 731 (793)
Q Consensus 653 asgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg-~II~IWDv~tg~~l~~~~L~gh~~~~ 731 (793)
++...++.|++||. +++.+..+.. ......+..++++++|. ++++...++ .| ++||. +|+.+. .+..+.
T Consensus 179 v~~~~~~~i~~~~~-~g~~~~~~~~-~g~~~~p~~i~~d~~G~-l~v~~~~~~~~i-~~~~~-~g~~~~--~~~~~~--- 248 (286)
T 1q7f_A 179 ISDNRAHCVKVFNY-EGQYLRQIGG-EGITNYPIGVGINSNGE-ILIADNHNNFNL-TIFTQ-DGQLIS--ALESKV--- 248 (286)
T ss_dssp EEEGGGTEEEEEET-TCCEEEEESC-TTTSCSEEEEEECTTCC-EEEEECSSSCEE-EEECT-TSCEEE--EEEESS---
T ss_pred EEECCCCEEEEEcC-CCCEEEEEcc-CCccCCCcEEEECCCCC-EEEEeCCCCEEE-EEECC-CCCEEE--EEcccC---
Confidence 77777899999997 5666555532 11124678899999997 777777775 88 99995 677776 443322
Q ss_pred cceeeeccCCccccCCccEEEEEEcCCCCceeeEeeEEEeCCCcEEEEcCCC
Q 003822 732 SMFVQSLRGDPFRDFNMSILAAYTRPSSKSEIVKVNLLASTDHCDKECSHGQ 783 (793)
Q Consensus 732 s~~v~sl~g~~~~~h~~~V~sva~~P~~~~~iv~~~ltaS~Dg~VkvW~~~~ 783 (793)
....+.+++++|++ . ++ +++.|++|++|+...
T Consensus 249 --------------~~~~~~~i~~~~~g-~-l~----vs~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 249 --------------KHAQCFDVALMDDG-S-VV----LASKDYRLYIYRYVQ 280 (286)
T ss_dssp --------------CCSCEEEEEEETTT-E-EE----EEETTTEEEEEECSC
T ss_pred --------------CCCcceeEEECCCC-c-EE----EECCCCeEEEEEccc
Confidence 01247789999964 2 33 456799999999754
No 170
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.52 E-value=8.3e-13 Score=155.87 Aligned_cols=256 Identities=10% Similarity=0.006 Sum_probs=162.6
Q ss_pred eEEEEEeCCCCCEEEEE--eCCCeEEEEECCCCeEEEEEeccCCCCCEE---------EEEEee-CCCCE-EEEEEc-CC
Q 003822 456 PRQFEYHPSISCLMVFG--TLDGEIVVVNHENENIVSYIPSFGAMNSVL---------GLCWLK-KYPSK-LIAGSD-NG 521 (793)
Q Consensus 456 V~~vafsP~d~~~Lasg--s~DG~I~VWd~~t~~~i~~l~~~~h~~~V~---------sv~fs~-~~g~~-Lasgs~-Dg 521 (793)
+..++|++ +.-+++++ +.++...||....+.....+. .|...+. ...|+. |+|+. |+.++. +.
T Consensus 26 ~~~~~~s~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~ 102 (662)
T 3azo_A 26 PACVGAVG-DEVWWVAPRPAEAGRATLVRRRADGAEESAL--PAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQ 102 (662)
T ss_dssp CEEEEEET-TEEEEEEEETTTTTEEEEEEECTTSCEEESS--CTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTC
T ss_pred cceeEEcC-CeEEEEecCcccCCcEEEEEECCCCCcceeC--CCCccccccccccCCccceeeeecCCCeEEEEEECCCC
Confidence 78899998 66566666 558899999964444444444 5555555 566763 78887 666553 45
Q ss_pred cEEEEEcC--C-CCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEECC----------CcEEEEECCC------C
Q 003822 522 SLKLYDIR--H-MPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYS----------KNIALYDINS------G 582 (793)
Q Consensus 522 tV~vWDl~--~-~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~D----------g~I~IWDl~t------g 582 (793)
.|.+|++. . +.. ..+.... ...+...+.+++|+|++..+++++.+ ..|++||+.+ +
T Consensus 103 ~l~~~~~~~~g~~~~--~~l~~~~---~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 177 (662)
T 3azo_A 103 RLYAFEPDAPGGAVP--RPLTPVS---AVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRS 177 (662)
T ss_dssp CEEEECTTSTTCCCC--EECSCCC---CSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGG
T ss_pred eEEEEcCCCCCCCCC--EeccCCc---cCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCC
Confidence 56666654 2 222 1111100 00023457899999999999988865 5899999998 5
Q ss_pred cEEEEEcccCCCCeEEEEEcCCCCcEEEEEeCC--------CeEEEEECC-CCCccceEE-ccCC-CCeEEEEEecCCCE
Q 003822 583 RRLQVFADMHKEHINVVKFSNHSPSIFATSSFD--------QDVKLWDLR-QKPIQPCYT-ASSS-KGNVMVCFSPDDHY 651 (793)
Q Consensus 583 ~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~D--------g~IrIWDlr-t~~~~~~~~-l~~~-~~~vsv~fSpdg~~ 651 (793)
+.. .+...+...+..++|+|+| +.|+.++.+ ..|++||+. ++....... ..++ .....+.|+|||++
T Consensus 178 ~~~-~l~~~~~~~~~~~~~SpDG-~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l 255 (662)
T 3azo_A 178 AVR-ELSDDAHRFVTGPRLSPDG-RQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSL 255 (662)
T ss_dssp GSE-ESSCSCSSEECCCEECTTS-SEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCE
T ss_pred cee-EEEecCCCcccCceECCCC-CEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeE
Confidence 543 3330255678889999999 778776654 379999998 452111111 2222 34556999999998
Q ss_pred EEEEeCCC--eEEEEEcCCCcEEEEEeeecCCC-----CCcEEEEEeeCCCeEEEEEeCCCcEEEEE--EcCCCcEEEee
Q 003822 652 LLVSAVDN--EVRQLLAVDGRVHLNFGITATGS-----SQNYTRSYYLNGRDYIVSGSCDEHVVRIC--CAQTGRRLRDI 722 (793)
Q Consensus 652 Lasgs~Dg--~I~IwDl~tg~~~~~l~~~~~~~-----~~v~s~afspdg~~~L~Sgs~Dg~II~IW--Dv~tg~~l~~~ 722 (793)
+++++.++ .|.+||+.+++............ ..+..++|++++. ++++++. +.+ +|| |..+++ +.
T Consensus 256 ~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~-~~~~~~~-~~~-~l~~~d~~~~~-~~-- 329 (662)
T 3azo_A 256 IVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGL-IAVVHGK-GAA-VLGILDPESGE-LV-- 329 (662)
T ss_dssp EEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSC-EEEEEBS-SSC-EEEEEETTTTE-EE--
T ss_pred EEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCE-EEEEEEc-Ccc-EEEEEECCCCc-EE--
Confidence 78887788 67777776776533221110000 0134678888888 8888888 888 999 555555 45
Q ss_pred eecCC
Q 003822 723 SLEGK 727 (793)
Q Consensus 723 ~L~gh 727 (793)
.+.++
T Consensus 330 ~l~~~ 334 (662)
T 3azo_A 330 DAAGP 334 (662)
T ss_dssp ECCSS
T ss_pred EecCC
Confidence 45444
No 171
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.52 E-value=1.6e-12 Score=142.06 Aligned_cols=241 Identities=10% Similarity=-0.012 Sum_probs=157.3
Q ss_pred EEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEe-eCCCCEEEEEE------------------
Q 003822 458 QFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWL-KKYPSKLIAGS------------------ 518 (793)
Q Consensus 458 ~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs-~~~g~~Lasgs------------------ 518 (793)
..+|+| +++.|+.++.++.|++||+.+++...... .+...+....|. .+++..++...
T Consensus 85 ~~~~sp-dg~~l~~~~~~~~l~~~d~~~g~~~~~~~--~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~ 161 (388)
T 3pe7_A 85 GGFLSP-DDDALFYVKDGRNLMRVDLATLEENVVYQ--VPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEF 161 (388)
T ss_dssp SCEECT-TSSEEEEEETTTEEEEEETTTCCEEEEEE--CCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHH
T ss_pred ceEEcC-CCCEEEEEeCCCeEEEEECCCCcceeeee--chhhcccccceeECCCCCeeccccccCcccccccccchhhhh
Confidence 467999 99999999999999999999998776655 334445444442 37788776432
Q ss_pred ----cCCcEEEEEcCCCCCcccccccCCceeEecCCCCeEEEEEcc-CCCEEEEEECC------CcEEEEECCCCcEEEE
Q 003822 519 ----DNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNS-MDELFLASGYS------KNIALYDINSGRRLQV 587 (793)
Q Consensus 519 ----~DgtV~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~-~~~~lla~g~D------g~I~IWDl~tg~~l~~ 587 (793)
.+..|.+||+.+++.. ....+...+..+.|+| ++..++.+..+ ..|.++|+..+.. ..
T Consensus 162 ~~~~~~~~l~~~d~~~g~~~----------~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~ 230 (388)
T 3pe7_A 162 YFTKPCCRLMRVDLKTGEST----------VILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-RK 230 (388)
T ss_dssp GGGCCCEEEEEEETTTCCEE----------EEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-EE
T ss_pred hccCCcceEEEEECCCCceE----------EeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-EE
Confidence 3467999999886531 1122335678999999 78777777643 3788888876544 34
Q ss_pred EcccCC-CCeEEEEEcCCCCcEEEEEeCCC----eEEEEECCCCCccceEEccCCCCeE----EEEEecCCCEEEEE---
Q 003822 588 FADMHK-EHINVVKFSNHSPSIFATSSFDQ----DVKLWDLRQKPIQPCYTASSSKGNV----MVCFSPDDHYLLVS--- 655 (793)
Q Consensus 588 ~~~gh~-~~V~sv~fspdg~~~LaTgs~Dg----~IrIWDlrt~~~~~~~~l~~~~~~v----sv~fSpdg~~Lasg--- 655 (793)
+...+. ..+..++|+|+|..+++++..++ .|.+||+.+++...+....+..... ...|+|||+.|+..
T Consensus 231 l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~ 310 (388)
T 3pe7_A 231 VKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQD 310 (388)
T ss_dssp SCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------
T ss_pred eeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeee
Confidence 442222 35788999999943434443322 3999999998755555544311111 13799999988864
Q ss_pred ------eCCCeEEEEEcCCCcEEEEEeeecCC--------CCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcC
Q 003822 656 ------AVDNEVRQLLAVDGRVHLNFGITATG--------SSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQ 714 (793)
Q Consensus 656 ------s~Dg~I~IwDl~tg~~~~~l~~~~~~--------~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~ 714 (793)
..+..|++||+.+++.. .+...... ...+...+|+|||+.+++++..+|.. .||.+.
T Consensus 311 ~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~-~l~~~~ 381 (388)
T 3pe7_A 311 DSGYKIENDPFLYVFNMKNGTQH-RVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKP-ALYLAT 381 (388)
T ss_dssp ------CCCCEEEEEETTTTEEE-EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSC-EEEEEE
T ss_pred ccccccCCCCEEEEEeccCCceE-EeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCce-eEEEEE
Confidence 44668999999988763 33321110 00356789999999455555567777 777553
No 172
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.52 E-value=3.8e-12 Score=137.75 Aligned_cols=264 Identities=7% Similarity=-0.047 Sum_probs=180.7
Q ss_pred CCCeEEEEECCCCeEEEEEec----cCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcccccccCCceeEecC
Q 003822 474 LDGEIVVVNHENENIVSYIPS----FGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDE 549 (793)
Q Consensus 474 ~DG~I~VWd~~t~~~i~~l~~----~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~~~~~~~~~~~~~~~ 549 (793)
.+++|.+||.++++....+.. .........+.+. ++..+++...++.|.+||..+++... .+..
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~--~~~lyv~~~~~~~v~viD~~t~~~~~----------~i~~ 82 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR--DGIGWIVVNNSHVIFAIDINTFKEVG----------RITG 82 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE--TTEEEEEEGGGTEEEEEETTTCCEEE----------EEEC
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE--CCEEEEEEcCCCEEEEEECcccEEEE----------EcCC
Confidence 478999999999987654421 0122456778763 45566666678999999999876421 1223
Q ss_pred CCCeEEEEEccCCCEEEEEE-CCCcEEEEECCCCcEEEEEcccC----CCCeEEEEEcCCCCcEEEEEe-CCCeEEEEEC
Q 003822 550 FDQLTSVHVNSMDELFLASG-YSKNIALYDINSGRRLQVFADMH----KEHINVVKFSNHSPSIFATSS-FDQDVKLWDL 623 (793)
Q Consensus 550 ~~~V~sv~~s~~~~~lla~g-~Dg~I~IWDl~tg~~l~~~~~gh----~~~V~sv~fspdg~~~LaTgs-~Dg~IrIWDl 623 (793)
...+..+++++++ .++++. .++.|.+||..+++....+..+. ......+++ ..+ .++++.. .++.|.+||+
T Consensus 83 ~~~p~~i~~~~~g-~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~-~lyv~~~~~~~~v~viD~ 159 (328)
T 3dsm_A 83 FTSPRYIHFLSDE-KAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YGK-YVYVNCWSYQNRILKIDT 159 (328)
T ss_dssp CSSEEEEEEEETT-EEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ETT-EEEEEECTTCCEEEEEET
T ss_pred CCCCcEEEEeCCC-eEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-ECC-EEEEEcCCCCCEEEEEEC
Confidence 3567889997776 666666 78999999999999888776322 114567777 344 5555554 4889999999
Q ss_pred CCCCccceEEccCCCCeEEEEEecCCCEEEEEeCC----------CeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeC
Q 003822 624 RQKPIQPCYTASSSKGNVMVCFSPDDHYLLVSAVD----------NEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLN 693 (793)
Q Consensus 624 rt~~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs~D----------g~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspd 693 (793)
.+++... .+.....+..++++|+|++++++..+ +.|.+||..+++....+... ....+..++++|+
T Consensus 160 ~t~~~~~--~i~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~--~g~~p~~la~~~d 235 (328)
T 3dsm_A 160 ETDKVVD--ELTIGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFK--LGDWPSEVQLNGT 235 (328)
T ss_dssp TTTEEEE--EEECSSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECC--TTCCCEEEEECTT
T ss_pred CCCeEEE--EEEcCCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecC--CCCCceeEEEecC
Confidence 9875433 33333345568999999977766554 78999999999887776532 1236789999999
Q ss_pred CCeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCCCCccceeeeccCCccccCCccEEEEEEcCCCCceeeEeeEEE---
Q 003822 694 GRDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKSEIVKVNLLA--- 770 (793)
Q Consensus 694 g~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~~~~iv~~~lta--- 770 (793)
++ +++.+.. .| .+||..+++......+.. ......+++++|+.....+ +.
T Consensus 236 ~~-~lyv~~~--~v-~~~d~~t~~~~~~~~~~~-------------------~~~~p~gi~vdp~~g~lyv----a~~~~ 288 (328)
T 3dsm_A 236 RD-TLYWINN--DI-WRMPVEADRVPVRPFLEF-------------------RDTKYYGLTVNPNNGEVYV----ADAID 288 (328)
T ss_dssp SC-EEEEESS--SE-EEEETTCSSCCSSCSBCC-------------------CSSCEEEEEECTTTCCEEE----EECTT
T ss_pred CC-EEEEEcc--EE-EEEECCCCceeeeeeecC-------------------CCCceEEEEEcCCCCeEEE----Ecccc
Confidence 98 6665544 78 999999887542000000 0135788999996554444 44
Q ss_pred -eCCCcEEEEcCCC
Q 003822 771 -STDHCDKECSHGQ 783 (793)
Q Consensus 771 -S~Dg~VkvW~~~~ 783 (793)
+.++.|.+|+...
T Consensus 289 y~~~~~V~v~d~~g 302 (328)
T 3dsm_A 289 YQQQGIVYRYSPQG 302 (328)
T ss_dssp SSSEEEEEEECTTC
T ss_pred cccCCEEEEECCCC
Confidence 5689999999863
No 173
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.52 E-value=2.4e-12 Score=139.32 Aligned_cols=247 Identities=9% Similarity=0.003 Sum_probs=173.4
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEE-cCCcEEEEEcCCCCCc
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGS-DNGSLKLYDIRHMPPS 534 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs-~DgtV~vWDl~~~~~~ 534 (793)
+..+++.. +.++++...++.|.+||..+++.+..+. .......++++ +++ .++++. .++.|.+||..+++..
T Consensus 46 ~~~i~~~~--~~lyv~~~~~~~v~viD~~t~~~~~~i~---~~~~p~~i~~~-~~g-~lyv~~~~~~~v~~iD~~t~~~~ 118 (328)
T 3dsm_A 46 AQSMVIRD--GIGWIVVNNSHVIFAIDINTFKEVGRIT---GFTSPRYIHFL-SDE-KAYVTQIWDYRIFIINPKTYEIT 118 (328)
T ss_dssp EEEEEEET--TEEEEEEGGGTEEEEEETTTCCEEEEEE---CCSSEEEEEEE-ETT-EEEEEEBSCSEEEEEETTTTEEE
T ss_pred ceEEEEEC--CEEEEEEcCCCEEEEEECcccEEEEEcC---CCCCCcEEEEe-CCC-eEEEEECCCCeEEEEECCCCeEE
Confidence 56777754 4566666778999999999999988885 23568899986 466 455554 8899999999886532
Q ss_pred ccccccCCceeEecCCCCeEEEEEccCCCEEEEEE--CCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEE
Q 003822 535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASG--YSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATS 612 (793)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g--~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTg 612 (793)
.....+. . .........+++ .++.++++. .++.|.+||+.+++.+.++.. ......++++|+| ++++++
T Consensus 119 ~~i~~g~-~---~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~--g~~p~~i~~~~dG-~l~v~~ 189 (328)
T 3dsm_A 119 GYIECPD-M---DMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTI--GIQPTSLVMDKYN-KMWTIT 189 (328)
T ss_dssp EEEECTT-C---CTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEEC--SSCBCCCEECTTS-EEEEEB
T ss_pred EEEEcCC-c---cccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEc--CCCccceEEcCCC-CEEEEE
Confidence 1110000 0 000013456666 466666666 389999999999998888872 3456789999998 677766
Q ss_pred eCC----------CeEEEEECCCCCccceEEccCCCCeEEEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCC
Q 003822 613 SFD----------QDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGS 682 (793)
Q Consensus 613 s~D----------g~IrIWDlrt~~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~ 682 (793)
..+ +.|.+||..+++............+..++|+|+++.|+++.. .|.+||..+++.... .....+.
T Consensus 190 ~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~-~~~~~~~ 266 (328)
T 3dsm_A 190 DGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVR-PFLEFRD 266 (328)
T ss_dssp CCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSS-CSBCCCS
T ss_pred CCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeee-eeecCCC
Confidence 554 789999998875444444433345677999999999998865 899999998875321 1111123
Q ss_pred CCcEEEEEeeCCCeEEEEE----eCCCcEEEEEEcCCCcEEEeee
Q 003822 683 SQNYTRSYYLNGRDYIVSG----SCDEHVVRICCAQTGRRLRDIS 723 (793)
Q Consensus 683 ~~v~s~afspdg~~~L~Sg----s~Dg~II~IWDv~tg~~l~~~~ 723 (793)
.....++++|+++.++++. ..++.| .+||.. |+.++.+.
T Consensus 267 ~~p~gi~vdp~~g~lyva~~~~y~~~~~V-~v~d~~-g~~~~~i~ 309 (328)
T 3dsm_A 267 TKYYGLTVNPNNGEVYVADAIDYQQQGIV-YRYSPQ-GKLIDEFY 309 (328)
T ss_dssp SCEEEEEECTTTCCEEEEECTTSSSEEEE-EEECTT-CCEEEEEE
T ss_pred CceEEEEEcCCCCeEEEEcccccccCCEE-EEECCC-CCEEEEEE
Confidence 5678899999655466666 667888 999998 99998433
No 174
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.52 E-value=1.5e-11 Score=143.21 Aligned_cols=244 Identities=12% Similarity=0.062 Sum_probs=178.0
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcC--CCCCcccccccCC
Q 003822 465 ISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIR--HMPPSIRGMHYGA 542 (793)
Q Consensus 465 d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~--~~~~~~~~~~~~~ 542 (793)
.+.++++...+++|.++|..+++.+..+.. ...+..+.|+ ++++++++++.|+.|.+||+. +.+.. .
T Consensus 166 ~~~~~V~~~~~~~V~viD~~t~~v~~~i~~---g~~p~~v~~S-pDGr~lyv~~~dg~V~viD~~~~t~~~v-~------ 234 (567)
T 1qks_A 166 ENLFSVTLRDAGQIALIDGSTYEIKTVLDT---GYAVHISRLS-ASGRYLFVIGRDGKVNMIDLWMKEPTTV-A------ 234 (567)
T ss_dssp GGEEEEEETTTTEEEEEETTTCCEEEEEEC---SSCEEEEEEC-TTSCEEEEEETTSEEEEEETTSSSCCEE-E------
T ss_pred CceEEEEeCCCCeEEEEECCCCeEEEEEeC---CCCccceEEC-CCCCEEEEEcCCCeEEEEECCCCCCcEe-E------
Confidence 445677778899999999999999988863 2357789987 799999999999999999996 43321 1
Q ss_pred ceeEecCCCCeEEEEEc----cCCCEEEEEEC-CCcEEEEECCCCcEEEEEccc---------CCC-CeEEEEEcCCCCc
Q 003822 543 GTVTFDEFDQLTSVHVN----SMDELFLASGY-SKNIALYDINSGRRLQVFADM---------HKE-HINVVKFSNHSPS 607 (793)
Q Consensus 543 ~~~~~~~~~~V~sv~~s----~~~~~lla~g~-Dg~I~IWDl~tg~~l~~~~~g---------h~~-~V~sv~fspdg~~ 607 (793)
..........++|+ |++.+++++.. +++|.++|..+.+.+.++..+ |.. .+..+..+++++.
T Consensus 235 ---~i~~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~ 311 (567)
T 1qks_A 235 ---EIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPE 311 (567)
T ss_dssp ---EEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSE
T ss_pred ---EEecCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCE
Confidence 12222346789998 58888888875 799999999999998887621 212 6788999998877
Q ss_pred EEEEEeCCCeEEEEECCCCCccceEEccCCCCeEEEEEecCCCEEEEEe-CCCeEEEEEcCCCcEEEEEee-ecCCC-CC
Q 003822 608 IFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLVSA-VDNEVRQLLAVDGRVHLNFGI-TATGS-SQ 684 (793)
Q Consensus 608 ~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs-~Dg~I~IwDl~tg~~~~~l~~-~~~~~-~~ 684 (793)
++++...+|.|.++|........+..+......-.+.|+|+|++++++. .++.|.++|+.+++.+..+.. ....+ ..
T Consensus 312 ~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~ 391 (567)
T 1qks_A 312 FIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGR 391 (567)
T ss_dssp EEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTT
T ss_pred EEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCcc
Confidence 7777777899999999875433344444444445689999999988876 578999999999998877764 21111 11
Q ss_pred cEEEEEeeCCCeEEEEEe-CCCcEEEEEEcCC-------CcEEEeeeecC
Q 003822 685 NYTRSYYLNGRDYIVSGS-CDEHVVRICCAQT-------GRRLRDISLEG 726 (793)
Q Consensus 685 v~s~afspdg~~~L~Sgs-~Dg~II~IWDv~t-------g~~l~~~~L~g 726 (793)
... .+.|+++...+++. .++.| .++|..+ .+.++ ++.+
T Consensus 392 g~~-~~~p~~g~v~~t~~~g~~~V-svid~~~~~~~~~~~kvv~--~i~~ 437 (567)
T 1qks_A 392 GAN-FVHPTFGPVWATSHMGDDSV-ALIGTDPEGHPDNAWKILD--SFPA 437 (567)
T ss_dssp CEE-EEETTTEEEEEEEBSSSSEE-EEEECCTTTCTTTBTSEEE--EEEC
T ss_pred cee-eECCCCCcEEEeCCCCCCeE-EEecCCCCCCccccCEEEE--EEec
Confidence 112 25777664555553 45788 9999988 56777 4443
No 175
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.51 E-value=4.5e-12 Score=139.24 Aligned_cols=270 Identities=10% Similarity=0.048 Sum_probs=181.4
Q ss_pred CCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEE----------cCCcEEEEEcCCCCCcccccccCCc
Q 003822 474 LDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGS----------DNGSLKLYDIRHMPPSIRGMHYGAG 543 (793)
Q Consensus 474 ~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs----------~DgtV~vWDl~~~~~~~~~~~~~~~ 543 (793)
.|+.|.+||..+++.+..++ .+..+ .++|+ ++++++++++ .+++|.+||..+.+..........
T Consensus 29 ~d~~v~v~D~~t~~~~~~i~--~g~~p--~i~~s-pdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~- 102 (361)
T 2oiz_A 29 TESRVHVYDYTNGKFLGMVP--TAFNG--HVQVS-NDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPK- 102 (361)
T ss_dssp GGCEEEEEETTTCCEEEEEE--CCEEE--EEEEC-TTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTT-
T ss_pred ccCeEEEEECCCCeEEEEec--CCCCC--ceEEC-CCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCcc-
Confidence 37899999999999888776 33343 88997 7999998886 367899999987654211100000
Q ss_pred eeEecCCCCeEEEEEccCCCEEEEEEC--CCcEEEEECCCCcEEEE-EcccCCCCeEEEEEcCCCCcEEEEEeCCCeEEE
Q 003822 544 TVTFDEFDQLTSVHVNSMDELFLASGY--SKNIALYDINSGRRLQV-FADMHKEHINVVKFSNHSPSIFATSSFDQDVKL 620 (793)
Q Consensus 544 ~~~~~~~~~V~sv~~s~~~~~lla~g~--Dg~I~IWDl~tg~~l~~-~~~gh~~~V~sv~fspdg~~~LaTgs~Dg~IrI 620 (793)
.+.+......++++|++.+++++.. +++|.+||+.+++.+.. +. +.+ ...+.+.|+++..+++.+.||.+.+
T Consensus 103 --~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~--~~~-~~~v~~~p~~~~~~~~~~~dg~~~~ 177 (361)
T 2oiz_A 103 --RVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTA--AAG-CWSVIPQPNRPRSFMTICGDGGLLT 177 (361)
T ss_dssp --BCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGG--GTT-EEEEEECTTSSSEEEEEETTSSEEE
T ss_pred --ccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEec--CCC-cceeEEcCCCCeeEEEECCCCcEEE
Confidence 0112234678899999999988873 68999999999998888 65 322 2346678887678889999999999
Q ss_pred EECCC-CCccceE----EccCCCCeEEEEEecCCCEEEEEeCCCeEEEEEcCCCcE--EEEEeeec----CC---CCCcE
Q 003822 621 WDLRQ-KPIQPCY----TASSSKGNVMVCFSPDDHYLLVSAVDNEVRQLLAVDGRV--HLNFGITA----TG---SSQNY 686 (793)
Q Consensus 621 WDlrt-~~~~~~~----~l~~~~~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~--~~~l~~~~----~~---~~~v~ 686 (793)
|+... ++..... .+......+.+.++|++..++..+.++.+.++|+..+.. ...+.... .. .....
T Consensus 178 v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~ 257 (361)
T 2oiz_A 178 INLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYN 257 (361)
T ss_dssp EEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSS
T ss_pred EEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCee
Confidence 99865 3222111 122223333455678888888888899999999876542 22222110 00 01112
Q ss_pred EEEEeeCCCeEEEEEeC----------CCcEEEEEEcCCCcEEEeeeecCCCCCccceeeeccCCccccCCccEEEEEEc
Q 003822 687 TRSYYLNGRDYIVSGSC----------DEHVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTR 756 (793)
Q Consensus 687 s~afspdg~~~L~Sgs~----------Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~ 756 (793)
.++++|+++..+++.+. .+.| .+||+.+++.+. ++..+ . +.+++|+
T Consensus 258 ~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v-~viD~~t~~~v~--~i~~~-------------------~--p~~ia~s 313 (361)
T 2oiz_A 258 LVGLHRASGRMYVFMHPDGKEGTHKFPAAEI-WVMDTKTKQRVA--RIPGR-------------------D--ALSMTID 313 (361)
T ss_dssp CEEEETTTTEEEEEEESSCCTTCTTCCCSEE-EEEETTTTEEEE--EEECT-------------------T--CCEEEEE
T ss_pred EEEEecCCCeEEEEEccCCCcccccCCCceE-EEEECCCCcEEE--EEecC-------------------C--eeEEEEC
Confidence 36899998844444431 2367 999999999988 44432 1 6689999
Q ss_pred CCCCceeeEeeEEEeCCCcEEEEcCCCC
Q 003822 757 PSSKSEIVKVNLLASTDHCDKECSHGQH 784 (793)
Q Consensus 757 P~~~~~iv~~~ltaS~Dg~VkvW~~~~~ 784 (793)
|+++ .++ +++. ++|.+|+....
T Consensus 314 pdg~-~l~----v~n~-~~v~v~D~~t~ 335 (361)
T 2oiz_A 314 QQRN-LML----TLDG-GNVNVYDISQP 335 (361)
T ss_dssp TTTT-EEE----EECS-SCEEEEECSSS
T ss_pred CCCC-EEE----EeCC-CeEEEEECCCC
Confidence 9865 333 4554 99999997654
No 176
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.51 E-value=3.2e-12 Score=137.68 Aligned_cols=256 Identities=11% Similarity=0.052 Sum_probs=164.7
Q ss_pred eEEEEEeCCCCCEEEEEe---------CCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcC---Cc-
Q 003822 456 PRQFEYHPSISCLMVFGT---------LDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDN---GS- 522 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs---------~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~D---gt- 522 (793)
+...++ +++.++... .++.|.+||+.+++... + ..+..++|+ |+|+.|+.++.+ +.
T Consensus 17 ~~~~~~---dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l------~~~~~~~~S-pDg~~la~~~~~~~~~~~ 85 (347)
T 2gop_A 17 LSDPRT---KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF-I------ENATMPRIS-PDGKKIAFMRANEEKKVS 85 (347)
T ss_dssp EEEEEE---ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE-E------ESCEEEEEC-TTSSEEEEEEEETTTTEE
T ss_pred cccceE---CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE-c------ccCCCeEEC-CCCCEEEEEEeccCCCcc
Confidence 455555 455665432 26789999999887543 2 357889998 799988887754 33
Q ss_pred -EEEEEcCCCCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEECC---------------------------CcE
Q 003822 523 -LKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYS---------------------------KNI 574 (793)
Q Consensus 523 -V~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~D---------------------------g~I 574 (793)
|.+||+.+++.. .+ ..... +..+.|+|++..++.++.+ ..|
T Consensus 86 ~l~~~~~~~g~~~---------~l-~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l 154 (347)
T 2gop_A 86 EIWVADLETLSSK---------KI-LEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTF 154 (347)
T ss_dssp EEEEEETTTTEEE---------EE-EEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEE
T ss_pred eEEEEECCCCceE---------EE-EcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceE
Confidence 777777765421 11 11123 7899999999988888632 579
Q ss_pred EEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeCCC-------eEEEEECCCCCccceEEccCCCCeEEEEEec
Q 003822 575 ALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQ-------DVKLWDLRQKPIQPCYTASSSKGNVMVCFSP 647 (793)
Q Consensus 575 ~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~Dg-------~IrIWDlrt~~~~~~~~l~~~~~~vsv~fSp 647 (793)
++||+.+++.+..+. . . .+..+.|+|+| ++++++.++ ...+|.+.+++...+.. +... ..++|
T Consensus 155 ~~~d~~~~~~~~~l~-~-~-~~~~~~~spdg--~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~l~~---~~~~--~~~sp 224 (347)
T 2gop_A 155 WIFDTESEEVIEEFE-K-P-RFSSGIWHRDK--IVVNVPHREIIPQYFKFWDIYIWEDGKEEKMFE---KVSF--YAVDS 224 (347)
T ss_dssp EEEETTTTEEEEEEE-E-E-TTCEEEEETTE--EEEEEECCCSSCCSSCCEEEEEEETTEEEEEEE---EESE--EEEEE
T ss_pred EEEECCCCeEEeeec-C-C-CcccccCCCCe--EEEEEecccccccccccccEEEeCCCceEEecc---Ccce--eeECC
Confidence 999999888756666 2 3 78899999998 666665542 33444443443322222 2222 23499
Q ss_pred CCCEEEEEeCC--------CeEEEEEcCCCcEEEEEeeecCCCCCcEE-EEEeeCCCeEEEEEeCCCcEEEEEEcCCCcE
Q 003822 648 DDHYLLVSAVD--------NEVRQLLAVDGRVHLNFGITATGSSQNYT-RSYYLNGRDYIVSGSCDEHVVRICCAQTGRR 718 (793)
Q Consensus 648 dg~~Lasgs~D--------g~I~IwDl~tg~~~~~l~~~~~~~~~v~s-~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~ 718 (793)
+|++|+.++.+ ..|.+|| +++.. .+ ...+...+.. +.|+ ++ ++++++.++.+ +|| +.+|+.
T Consensus 225 dg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~-~l--~~~~~~~~~~~~~~s-dg--~~~~~~~~~~~-~l~-~~~g~~ 294 (347)
T 2gop_A 225 DGERILLYGKPEKKYMSEHNKLYIYD--GKEVM-GI--LDEVDRGVGQAKIKD-GK--VYFTLFEEGSV-NLY-IWDGEI 294 (347)
T ss_dssp CSSCEEEEECCSSSCCCSSCEEEEEC--SSCEE-ES--STTCCSEEEEEEEET-TE--EEEEEEETTEE-EEE-EESSSE
T ss_pred CCCEEEEEEccccCCccccceEEEEC--CCceE-ec--cccCCcccCCccEEc-Cc--EEEEEecCCcE-EEE-EcCCce
Confidence 99999887754 3688888 55542 22 2223344554 7787 65 88889999999 999 876665
Q ss_pred EEeeeecCCCCCccceeeeccCCccccCCccEEEEEEcCCCCceeeEeeEEEeCCCcE-EEEcCC
Q 003822 719 LRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKSEIVKVNLLASTDHCD-KECSHG 782 (793)
Q Consensus 719 l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~~~~iv~~~ltaS~Dg~V-kvW~~~ 782 (793)
.. .+.+ ...|.+++|+| ..+ ++++.++.. ++|..+
T Consensus 295 ~~--~~~~--------------------~~~v~~~~~s~---~~~----~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 295 KP--IAKG--------------------RHWIMGFDVDE---IVV----YLKETATRLRELFTWD 330 (347)
T ss_dssp EE--EECS--------------------SSEEEEEEESS---SEE----EEEECSSSCCEEEEES
T ss_pred EE--EecC--------------------CCeEEeeeeeC---cEE----EEEcCCCChHHheEeC
Confidence 33 2211 23688889988 233 366666654 777654
No 177
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.51 E-value=4.8e-12 Score=136.72 Aligned_cols=248 Identities=8% Similarity=0.032 Sum_probs=170.4
Q ss_pred CCEEEEEEeeCCCCEEEEEEcC------------------------CcEEEEEcCCCCCcccccccCCceeEecCCCCeE
Q 003822 499 NSVLGLCWLKKYPSKLIAGSDN------------------------GSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLT 554 (793)
Q Consensus 499 ~~V~sv~fs~~~g~~Lasgs~D------------------------gtV~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~ 554 (793)
+.+.++++. ++|+++++...+ ++|.+||..+++.... . ...+...+.
T Consensus 24 ~~v~~va~d-~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~-~-------~~~~~~~p~ 94 (329)
T 3fvz_A 24 GQVSGVALD-SKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQS-S-------GKNLFYLPH 94 (329)
T ss_dssp SCEEEEEEC-TTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEE-E-------CTTTCSSEE
T ss_pred CCceEEEEC-CCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEec-c-------CCCccCCce
Confidence 568888886 678888777766 4799999887654210 0 001234688
Q ss_pred EEEEccCCCEEEEEECCCcEEEEECCCCc-EEEEEc--------ccCCCCeEEEEEcC-CCCcEEEEEe-CCCeEEEEEC
Q 003822 555 SVHVNSMDELFLASGYSKNIALYDINSGR-RLQVFA--------DMHKEHINVVKFSN-HSPSIFATSS-FDQDVKLWDL 623 (793)
Q Consensus 555 sv~~s~~~~~lla~g~Dg~I~IWDl~tg~-~l~~~~--------~gh~~~V~sv~fsp-dg~~~LaTgs-~Dg~IrIWDl 623 (793)
.+++++++..+++...++.|++||..... .+..+. .++...+..++++| ++ .++++.+ .++.|++||.
T Consensus 95 gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g-~lyv~d~~~~~~I~~~~~ 173 (329)
T 3fvz_A 95 GLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTG-AVFVSDGYCNSRIVQFSP 173 (329)
T ss_dssp EEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTC-CEEEEECSSCCEEEEECT
T ss_pred EEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCC-eEEEEeCCCCCeEEEEcC
Confidence 99998888866666678999999986442 555552 13455789999999 56 7888886 6899999995
Q ss_pred CCCCccceEEccCC---------CCeEEEEEecC-CCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeC
Q 003822 624 RQKPIQPCYTASSS---------KGNVMVCFSPD-DHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLN 693 (793)
Q Consensus 624 rt~~~~~~~~l~~~---------~~~vsv~fSpd-g~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspd 693 (793)
. +.....+...+. ..+..++++|+ |..+++...++.|++||..+|+.+..+... .....+..++|+|
T Consensus 174 ~-g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~-~~~~~~~~~~~~p- 250 (329)
T 3fvz_A 174 S-GKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHA-SFGRNVFAISYIP- 250 (329)
T ss_dssp T-SCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCT-TTTTCEEEEEEET-
T ss_pred C-CCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEecc-ccCCCcceeeecC-
Confidence 4 333222221111 12557999999 666666677899999999989988877532 2345677888888
Q ss_pred CCeEEEE-------EeCCCcEEEEEEcCCCcEEEeeeecCCCCCccceeeeccCCccccCCccEEEEEEcCCCCceeeEe
Q 003822 694 GRDYIVS-------GSCDEHVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKSEIVKV 766 (793)
Q Consensus 694 g~~~L~S-------gs~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~~~~iv~~ 766 (793)
+. .+++ .+.+.++ ++|+..+|+.+. .+.... ++-..+.+++++|++ ..++
T Consensus 251 g~-~~~~~g~~~v~~~~~~~v-~~~~~~~g~~~~--~~~~~~----------------~~~~~p~~ia~~~dG-~lyv-- 307 (329)
T 3fvz_A 251 GF-LFAVNGKPYFGDQEPVQG-FVMNFSSGEIID--VFKPVR----------------KHFDMPHDIVASEDG-TVYI-- 307 (329)
T ss_dssp TE-EEEEECCCCTTCSCCCCE-EEEETTTCCEEE--EECCSS----------------SCCSSEEEEEECTTS-EEEE--
T ss_pred CE-EEEeCCCEEeccCCCcEE-EEEEcCCCeEEE--EEcCCC----------------CccCCeeEEEECCCC-CEEE--
Confidence 32 3333 2334578 999999999888 543211 222458899999975 4444
Q ss_pred eEEEeCCCcEEEEcCCCC
Q 003822 767 NLLASTDHCDKECSHGQH 784 (793)
Q Consensus 767 ~ltaS~Dg~VkvW~~~~~ 784 (793)
+.+.++.|++|+....
T Consensus 308 --ad~~~~~I~~~~~~~~ 323 (329)
T 3fvz_A 308 --GDAHTNTVWKFTLTEK 323 (329)
T ss_dssp --EESSSCCEEEEEEEEC
T ss_pred --EECCCCEEEEEeCCcc
Confidence 6678899999997654
No 178
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.48 E-value=2.4e-11 Score=130.38 Aligned_cols=234 Identities=10% Similarity=0.064 Sum_probs=158.1
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcC----CcEEEEEcCCC
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDN----GSLKLYDIRHM 531 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~D----gtV~vWDl~~~ 531 (793)
+.+++|+| ++++++++..++.|.+||..+++...... .+...+.+++|. +++++++++..+ +.|.+||..++
T Consensus 47 ~~~~~~~~-~g~l~~~~~~~~~i~~~d~~~~~~~~~~~--~~~~~~~~i~~~-~dg~l~v~~~~~~~~~~~i~~~d~~~~ 122 (333)
T 2dg1_A 47 LEGLNFDR-QGQLFLLDVFEGNIFKINPETKEIKRPFV--SHKANPAAIKIH-KDGRLFVCYLGDFKSTGGIFAATENGD 122 (333)
T ss_dssp EEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEE--CSSSSEEEEEEC-TTSCEEEEECTTSSSCCEEEEECTTSC
T ss_pred ccCcEECC-CCCEEEEECCCCEEEEEeCCCCcEEEEee--CCCCCcceEEEC-CCCcEEEEeCCCCCCCceEEEEeCCCC
Confidence 78899999 88888889899999999999887665443 355789999997 788877777666 68999998876
Q ss_pred CCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEEC------CCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCC
Q 003822 532 PPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY------SKNIALYDINSGRRLQVFADMHKEHINVVKFSNHS 605 (793)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~------Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg 605 (793)
..... ... ......+.++.+.+++..+++... .+.|..||..+++...... +...+..++|+|++
T Consensus 123 ~~~~~-~~~------~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~i~~~~dg 193 (333)
T 2dg1_A 123 NLQDI-IED------LSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQ--NISVANGIALSTDE 193 (333)
T ss_dssp SCEEE-ECS------SSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEE--EESSEEEEEECTTS
T ss_pred EEEEE-Ecc------CccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeec--CCCcccceEECCCC
Confidence 54211 000 012246889999887766655443 2556667766555443322 34567899999998
Q ss_pred CcEEEEEeCCCeEEEEECCC-CCccc------eEEccCCCCeEEEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeee
Q 003822 606 PSIFATSSFDQDVKLWDLRQ-KPIQP------CYTASSSKGNVMVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGIT 678 (793)
Q Consensus 606 ~~~LaTgs~Dg~IrIWDlrt-~~~~~------~~~l~~~~~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~ 678 (793)
..++++.+.++.|.+||+++ +.... .....++..+..++++++|+..++...++.|.+||. +++.+..+...
T Consensus 194 ~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~ 272 (333)
T 2dg1_A 194 KVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIP 272 (333)
T ss_dssp SEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECT
T ss_pred CEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcC
Confidence 33555666688999999964 22111 112222334446999999998887777899999998 57766666432
Q ss_pred cC---CCCCcEEEEEeeCCCeEEEEEeCC
Q 003822 679 AT---GSSQNYTRSYYLNGRDYIVSGSCD 704 (793)
Q Consensus 679 ~~---~~~~v~s~afspdg~~~L~Sgs~D 704 (793)
.. +...+..++|+++++ .|+.++.+
T Consensus 273 ~~~~g~~~~~~~~~~~~dg~-~L~v~~~~ 300 (333)
T 2dg1_A 273 GRDEGHMLRSTHPQFIPGTN-QLIICSND 300 (333)
T ss_dssp TGGGTCSCBCCEEEECTTSC-EEEEEEEC
T ss_pred CCccccccCcceEEECCCCC-EEEEEeCc
Confidence 11 011577899999987 45444444
No 179
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.48 E-value=9e-12 Score=133.67 Aligned_cols=267 Identities=12% Similarity=0.042 Sum_probs=176.7
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcc
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSI 535 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~ 535 (793)
+.+++|+| +...++..+.++.++.| .++....+. .+...+.+++|. +++++++++..++.|.+||..+++...
T Consensus 8 ~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~--~~~~~~~~~~~~-~~g~l~~~~~~~~~i~~~d~~~~~~~~ 80 (333)
T 2dg1_A 8 LPTLFYSG-KSNSAVPIISESELQTI---TAEPWLEIS--KKGLQLEGLNFD-RQGQLFLLDVFEGNIFKINPETKEIKR 80 (333)
T ss_dssp CCBCCSCG-GGGCSSCCCCGGGSCEE---ECEEEEEEE--SSCCCEEEEEEC-TTSCEEEEETTTCEEEEECTTTCCEEE
T ss_pred cceeeecC-CccceeEEeecccCccc---ccceeEEEe--ccCccccCcEEC-CCCCEEEEECCCCEEEEEeCCCCcEEE
Confidence 56677888 66666666778899999 345555554 566678999997 788887888889999999998765311
Q ss_pred cccccCCceeEecCCCCeEEEEEccCCCEEEEEECC----CcEEEEECCCCcEEEEEc-ccCCCCeEEEEEcCCCCcEEE
Q 003822 536 RGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYS----KNIALYDINSGRRLQVFA-DMHKEHINVVKFSNHSPSIFA 610 (793)
Q Consensus 536 ~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~D----g~I~IWDl~tg~~l~~~~-~gh~~~V~sv~fspdg~~~La 610 (793)
....+...+.++++++++..+++...+ +.|.+||..+++....+. ..+...++.++++|+| .+++
T Consensus 81 ---------~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g-~l~v 150 (333)
T 2dg1_A 81 ---------PFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKG-GFYF 150 (333)
T ss_dssp ---------EEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTS-CEEE
T ss_pred ---------EeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCC-CEEE
Confidence 111233568999998887766655555 689999998877654443 1245678999999998 6777
Q ss_pred EEeC------CCeEEEEECCCCCccceEEccCCCCeEEEEEecCCCEEEEE-eCCCeEEEEEcCC-CcEEEEEe----ee
Q 003822 611 TSSF------DQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLVS-AVDNEVRQLLAVD-GRVHLNFG----IT 678 (793)
Q Consensus 611 Tgs~------Dg~IrIWDlrt~~~~~~~~l~~~~~~vsv~fSpdg~~Lasg-s~Dg~I~IwDl~t-g~~~~~l~----~~ 678 (793)
+... .+.|..||..+++..... .....+..++|+|+|+.|+++ +.++.|.+||..+ +.....+. ..
T Consensus 151 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~ 228 (333)
T 2dg1_A 151 TDFRGYSTNPLGGVYYVSPDFRTVTPII--QNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYY 228 (333)
T ss_dssp EECCCBTTBCCEEEEEECTTSCCEEEEE--EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEE
T ss_pred EeccccccCCCceEEEEeCCCCEEEEee--cCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEe
Confidence 6553 355666676554333222 122235569999999977655 4578999999864 43322211 11
Q ss_pred cCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCCCCccceeeeccCCccccCCccEEEEEEcCC
Q 003822 679 ATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPS 758 (793)
Q Consensus 679 ~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~ 758 (793)
..+...+..++++++|. ++++...++.| .+||. +++.+. .+..+. ...+|...+.+++|+|+
T Consensus 229 ~~~~~~~~~i~~d~~G~-l~v~~~~~~~v-~~~d~-~g~~~~--~~~~~~-------------~~~g~~~~~~~~~~~~d 290 (333)
T 2dg1_A 229 FTGHEGPDSCCIDSDDN-LYVAMYGQGRV-LVFNK-RGYPIG--QILIPG-------------RDEGHMLRSTHPQFIPG 290 (333)
T ss_dssp CCSSSEEEEEEEBTTCC-EEEEEETTTEE-EEECT-TSCEEE--EEECTT-------------GGGTCSCBCCEEEECTT
T ss_pred cCCCCCCCceEECCCCC-EEEEEcCCCEE-EEECC-CCCEEE--EEEcCC-------------CccccccCcceEEECCC
Confidence 11223566789999998 66776777888 99998 577766 332221 00112224678899986
Q ss_pred C
Q 003822 759 S 759 (793)
Q Consensus 759 ~ 759 (793)
+
T Consensus 291 g 291 (333)
T 2dg1_A 291 T 291 (333)
T ss_dssp S
T ss_pred C
Confidence 4
No 180
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.48 E-value=4.4e-12 Score=152.53 Aligned_cols=234 Identities=7% Similarity=0.021 Sum_probs=153.2
Q ss_pred EEEEEeCCCCCEEEEEeCC---------CeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEE
Q 003822 457 RQFEYHPSISCLMVFGTLD---------GEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYD 527 (793)
Q Consensus 457 ~~vafsP~d~~~Lasgs~D---------G~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWD 527 (793)
..++||| |++.|+.++.+ +.+.+||+.+++... +..|.+.+...+|+ |+|+.||.+. |+.|++||
T Consensus 65 ~~~~~Sp-dg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~---l~~~~~~~~~~~~S-PdG~~la~~~-~~~i~~~~ 138 (740)
T 4a5s_A 65 NDYSISP-DGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLIT---EERIPNNTQWVTWS-PVGHKLAYVW-NNDIYVKI 138 (740)
T ss_dssp CEEEECT-TSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECC---SSCCCTTEEEEEEC-SSTTCEEEEE-TTEEEEES
T ss_pred cceEECC-CCCEEEEEECCeeeEEEccceEEEEEECCCCcEEE---cccCCCcceeeEEC-CCCCEEEEEE-CCeEEEEE
Confidence 4589999 99999998876 667799999987643 33677889999998 7999998885 68999999
Q ss_pred cCCCCCcccccccCCceeEecCC---------CCeEEEEEccCCCEEEEEECC-C-------------------------
Q 003822 528 IRHMPPSIRGMHYGAGTVTFDEF---------DQLTSVHVNSMDELFLASGYS-K------------------------- 572 (793)
Q Consensus 528 l~~~~~~~~~~~~~~~~~~~~~~---------~~V~sv~~s~~~~~lla~g~D-g------------------------- 572 (793)
+.++........+....+...+. ....++.|+|++..++.+..| +
T Consensus 139 ~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~y 218 (740)
T 4a5s_A 139 EPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPY 218 (740)
T ss_dssp STTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEEC
T ss_pred CCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecC
Confidence 98876532222222211111111 223458999999988887532 1
Q ss_pred ----------cEEEEECCC---Cc--EEEEEcc-----cCCCCeEEEEEcCCCCcEEEEEeC----CCeEEEEECCCCC-
Q 003822 573 ----------NIALYDINS---GR--RLQVFAD-----MHKEHINVVKFSNHSPSIFATSSF----DQDVKLWDLRQKP- 627 (793)
Q Consensus 573 ----------~I~IWDl~t---g~--~l~~~~~-----gh~~~V~sv~fspdg~~~LaTgs~----Dg~IrIWDlrt~~- 627 (793)
+|++||+.+ ++ ....+.. +|...+..++|+|+| ++++.... +..|++||+.+++
T Consensus 219 p~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg-~~~~~~~~r~~~~~~i~~~d~~tg~~ 297 (740)
T 4a5s_A 219 PKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQE-RISLQWLRRIQNYSVMDICDYDESSG 297 (740)
T ss_dssp CBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETT-EEEEEEEESSTTEEEEEEEEEETTTT
T ss_pred CCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCC-eEEEEEeCCCCCEEEEEEEECCCCcc
Confidence 588899998 73 2333431 277889999999999 65554432 3369999999876
Q ss_pred ---c---cceEEccCCCC------eEEEEEecCCCEEE-EEeC-C--CeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEe
Q 003822 628 ---I---QPCYTASSSKG------NVMVCFSPDDHYLL-VSAV-D--NEVRQLLAVDGRVHLNFGITATGSSQNYTRSYY 691 (793)
Q Consensus 628 ---~---~~~~~l~~~~~------~vsv~fSpdg~~La-sgs~-D--g~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afs 691 (793)
+ ..+.. .++.. ...+.|+|||+.++ ..+. + ..|++||+.++... .+. .+...+... +.
T Consensus 298 ~~~~~~~~~l~~-~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~-~lT---~g~~~v~~~-~~ 371 (740)
T 4a5s_A 298 RWNCLVARQHIE-MSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCT-FIT---KGTWEVIGI-EA 371 (740)
T ss_dssp EEEECGGGCEEE-ECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCE-ESC---CSSSCEEEE-EE
T ss_pred ccceeEEEEeee-ccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceE-ecc---cCCEEEEEE-EE
Confidence 2 22211 22222 12478999999887 6653 3 46888898877653 222 233334333 34
Q ss_pred eCCCeEEEEEeC
Q 003822 692 LNGRDYIVSGSC 703 (793)
Q Consensus 692 pdg~~~L~Sgs~ 703 (793)
++++.++++++.
T Consensus 372 ~d~~~i~f~~~~ 383 (740)
T 4a5s_A 372 LTSDYLYYISNE 383 (740)
T ss_dssp ECSSEEEEEESC
T ss_pred EeCCEEEEEEec
Confidence 667645555554
No 181
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.46 E-value=3e-10 Score=118.73 Aligned_cols=238 Identities=9% Similarity=0.076 Sum_probs=166.6
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcc
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSI 535 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~ 535 (793)
|.+++++| ++.++++...++.|.+||.. ++... +....+...+.++++. +++.+.++...++.|..||... ..
T Consensus 17 ~~~i~~d~-~g~l~v~~~~~~~v~~~d~~-~~~~~-~~~~~~~~~~~~i~~~-~~g~l~v~~~~~~~i~~~~~~g-~~-- 89 (299)
T 2z2n_A 17 PYGITVSD-KGKVWITQHKANMISCINLD-GKITE-YPLPTPDAKVMCLTIS-SDGEVWFTENAANKIGRITKKG-II-- 89 (299)
T ss_dssp EEEEEECT-TSCEEEEETTTTEEEEECTT-CCEEE-EECSSTTCCEEEEEEC-TTSCEEEEETTTTEEEEECTTS-CE--
T ss_pred ccceEECC-CCCEEEEecCCCcEEEEcCC-CCeEE-ecCCcccCceeeEEEC-CCCCEEEeCCCCCeEEEECCCC-cE--
Confidence 89999999 88888777668999999988 65433 3322345679999986 6788777776688899998762 21
Q ss_pred cccccCCceeEe-cCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeC
Q 003822 536 RGMHYGAGTVTF-DEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSF 614 (793)
Q Consensus 536 ~~~~~~~~~~~~-~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~ 614 (793)
... .. .....+.++++.+++..+++...++.|.+||. +++........+...+..+++.+++ .++++...
T Consensus 90 ~~~-------~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~ 160 (299)
T 2z2n_A 90 KEY-------TLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDN-ALWFTENQ 160 (299)
T ss_dssp EEE-------ECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTS-CEEEEETT
T ss_pred EEE-------eCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCC-CEEEEeCC
Confidence 111 11 12346889999877666655556789999998 5654433221345678999999998 77777777
Q ss_pred CCeEEEEECCCCCccceEEcc-CCCCeEEEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeC
Q 003822 615 DQDVKLWDLRQKPIQPCYTAS-SSKGNVMVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLN 693 (793)
Q Consensus 615 Dg~IrIWDlrt~~~~~~~~l~-~~~~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspd 693 (793)
++.|..||. +++... .... ....+..++++++|+..++...++.|.+||. +++.. .+.. ......+..+++.++
T Consensus 161 ~~~i~~~~~-~g~~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~~-~~~~~~~~~i~~~~~ 235 (299)
T 2z2n_A 161 NNAIGRITE-SGDITE-FKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEIT-EFKI-PTPNARPHAITAGAG 235 (299)
T ss_dssp TTEEEEECT-TCCEEE-EECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEE-EEEC-SSTTCCEEEEEECST
T ss_pred CCEEEEEcC-CCcEEE-eeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEE-EEEC-CCCCCCceeEEECCC
Confidence 789999998 554332 2222 2334557999999997666666889999998 77643 3322 224456788999999
Q ss_pred CCeEEEEEeCCCcEEEEEEcCCCc
Q 003822 694 GRDYIVSGSCDEHVVRICCAQTGR 717 (793)
Q Consensus 694 g~~~L~Sgs~Dg~II~IWDv~tg~ 717 (793)
|. +.++...++.| ..||. +++
T Consensus 236 g~-l~v~~~~~~~i-~~~d~-~g~ 256 (299)
T 2z2n_A 236 ID-LWFTEWGANKI-GRLTS-NNI 256 (299)
T ss_dssp TC-EEEEETTTTEE-EEEET-TTE
T ss_pred CC-EEEeccCCceE-EEECC-CCc
Confidence 87 66665567788 99998 454
No 182
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.46 E-value=1.6e-11 Score=146.78 Aligned_cols=244 Identities=8% Similarity=0.011 Sum_probs=167.9
Q ss_pred ceEEEEEeCCCCCEEEEEeCCC-----eEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCc-------
Q 003822 455 RPRQFEYHPSISCLMVFGTLDG-----EIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGS------- 522 (793)
Q Consensus 455 ~V~~vafsP~d~~~Lasgs~DG-----~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~Dgt------- 522 (793)
.+..++|+| |+++||.+..++ +|++||+.+++...... .+ ..+..++|+ ++|+.|+.++.++.
T Consensus 126 ~~~~~~~SP-Dg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~--~~-~~~~~~~ws-pDg~~l~~~~~~~~~~~~~~~ 200 (710)
T 2xdw_A 126 ALRGYAFSE-DGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL--ER-VKFSCMAWT-HDGKGMFYNAYPQQDGKSDGT 200 (710)
T ss_dssp EEEEEEECT-TSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE--EE-ECSCCEEEC-TTSSEEEEEECCCCSSCCSSS
T ss_pred EEEEEEECC-CCCEEEEEEcCCCCceEEEEEEECCCCCCCcccc--cC-cccceEEEE-eCCCEEEEEEECCcccccccc
Confidence 378899999 999998776543 89999999998765322 11 236678998 79999999888766
Q ss_pred ---------EEEEEcCCCCCcccccccCCceeEec---CCCCeEEEEEccCCCEEEEEEC-----CCcEEEEECCC----
Q 003822 523 ---------LKLYDIRHMPPSIRGMHYGAGTVTFD---EFDQLTSVHVNSMDELFLASGY-----SKNIALYDINS---- 581 (793)
Q Consensus 523 ---------V~vWDl~~~~~~~~~~~~~~~~~~~~---~~~~V~sv~~s~~~~~lla~g~-----Dg~I~IWDl~t---- 581 (793)
|++|++.+++... ...+. +...+.++.|+|++.+++.++. +..|++||+.+
T Consensus 201 ~~~~~~~~~v~~~~l~t~~~~~--------~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~ 272 (710)
T 2xdw_A 201 ETSTNLHQKLYYHVLGTDQSED--------ILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNG 272 (710)
T ss_dssp CCCCCCCCEEEEEETTSCGGGC--------EEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSS
T ss_pred ccccCCCCEEEEEECCCCcccc--------eEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccc
Confidence 9999998754310 11111 2234778999999998888764 56899999986
Q ss_pred --Cc-EEEEEcccCCCCeEEEEEcCCCCcEEEEEeCC---CeEEEEECCCCCccceEEccCC-C-CeE-EEEEecCCCEE
Q 003822 582 --GR-RLQVFADMHKEHINVVKFSNHSPSIFATSSFD---QDVKLWDLRQKPIQPCYTASSS-K-GNV-MVCFSPDDHYL 652 (793)
Q Consensus 582 --g~-~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~D---g~IrIWDlrt~~~~~~~~l~~~-~-~~v-sv~fSpdg~~L 652 (793)
+. ....+. .+...+.. .|+|+|..+++.+..+ +.|.+||+.++.......+..+ . ..+ .+.|++++..+
T Consensus 273 ~~~~~~~~~l~-~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv 350 (710)
T 2xdw_A 273 ITGILKWVKLI-DNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLV 350 (710)
T ss_dssp SCSSCCCEEEE-CSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEE
T ss_pred cCCccceEEee-CCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEE
Confidence 53 355555 36666655 4888884444444433 3699999987642111222222 2 244 48899888888
Q ss_pred EEEeCCCe--EEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCCCeEEEEEeC---CCcEEEEEEcCCCc
Q 003822 653 LVSAVDNE--VRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNGRDYIVSGSC---DEHVVRICCAQTGR 717 (793)
Q Consensus 653 asgs~Dg~--I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~---Dg~II~IWDv~tg~ 717 (793)
+++..++. |.+|++.+|+.+..+.. +...+..++++|++..++++.+. .+++ +.||+.+|+
T Consensus 351 ~~~~~~g~~~l~~~~~~~g~~~~~l~~---~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i-~~~d~~tg~ 416 (710)
T 2xdw_A 351 LCYLHDVKNTLQLHDLATGALLKIFPL---EVGSVVGYSGQKKDTEIFYQFTSFLSPGII-YHCDLTKEE 416 (710)
T ss_dssp EEEEETTEEEEEEEETTTCCEEEEECC---CSSEEEEEECCTTCSEEEEEEECSSCCCEE-EEEETTSSS
T ss_pred EEEEECCEEEEEEEECCCCCEEEecCC---CCceEEEEecCCCCCEEEEEEeCCCCCCEE-EEEECCCCc
Confidence 88888874 66778778887666653 24456677888888745555443 4678 999999887
No 183
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.45 E-value=1.6e-11 Score=129.77 Aligned_cols=238 Identities=9% Similarity=-0.008 Sum_probs=160.9
Q ss_pred eEEEEEeCCCCC-EEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCc
Q 003822 456 PRQFEYHPSISC-LMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS 534 (793)
Q Consensus 456 V~~vafsP~d~~-~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~ 534 (793)
+.+++|+| +++ +++++..++.|..|+..++ ...+. .+...+.++++. ++++++++...++.|.+||..+++..
T Consensus 30 ~eg~~~d~-~g~~l~~~~~~~~~i~~~~~~~~--~~~~~--~~~~~~~~l~~~-~dg~l~v~~~~~~~i~~~d~~~g~~~ 103 (296)
T 3e5z_A 30 TEGPVYVP-ARSAVIFSDVRQNRTWAWSDDGQ--LSPEM--HPSHHQNGHCLN-KQGHLIACSHGLRRLERQREPGGEWE 103 (296)
T ss_dssp EEEEEEEG-GGTEEEEEEGGGTEEEEEETTSC--EEEEE--SSCSSEEEEEEC-TTCCEEEEETTTTEEEEECSTTCCEE
T ss_pred ccCCeEeC-CCCEEEEEeCCCCEEEEEECCCC--eEEEE--CCCCCcceeeEC-CCCcEEEEecCCCeEEEEcCCCCcEE
Confidence 78899999 777 8888999999999999887 44444 456779999997 68888777767789999999776542
Q ss_pred ccccccCCceeEecCCCCeEEEEEccCCCEEEEEE---C--------------CCcEEEEECCCCcEEEEEcccCCCCeE
Q 003822 535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASG---Y--------------SKNIALYDINSGRRLQVFADMHKEHIN 597 (793)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g---~--------------Dg~I~IWDl~tg~~l~~~~~gh~~~V~ 597 (793)
..... ... .....+..+++.+++..+++.. . .+.|..+|.. ++. ..+. .+...++
T Consensus 104 ~~~~~-~~~----~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~-~~~~-~~~~~~~ 175 (296)
T 3e5z_A 104 SIADS-FEG----KKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL-SAPI-RDRVKPN 175 (296)
T ss_dssp EEECE-ETT----EECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE-EEEE-CCCSSEE
T ss_pred EEeec-cCC----CCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCE-EEee-cCCCCCc
Confidence 11100 000 0113467889988777666532 1 2456666655 444 3344 3667789
Q ss_pred EEEEcCCCCcEEEEEeCCCeEEEEECC-CCCc-cceEEccCC-CCeEEEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEE
Q 003822 598 VVKFSNHSPSIFATSSFDQDVKLWDLR-QKPI-QPCYTASSS-KGNVMVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLN 674 (793)
Q Consensus 598 sv~fspdg~~~LaTgs~Dg~IrIWDlr-t~~~-~~~~~l~~~-~~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~ 674 (793)
.++|+|++ +.+++.+.++.|.+||+. ++.. .....+... ..+..++++++|+..++. ++.|.+||.. ++.+..
T Consensus 176 gi~~s~dg-~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~ 251 (296)
T 3e5z_A 176 GLAFLPSG-NLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGR 251 (296)
T ss_dssp EEEECTTS-CEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEE
T ss_pred cEEECCCC-CEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEE
Confidence 99999999 666888888999999997 4433 111111222 223358999999865555 7899999976 777766
Q ss_pred EeeecCCCCCcEEEEEe-eCCCeEEEEEeCCCcEEEEEEcCCCcE
Q 003822 675 FGITATGSSQNYTRSYY-LNGRDYIVSGSCDEHVVRICCAQTGRR 718 (793)
Q Consensus 675 l~~~~~~~~~v~s~afs-pdg~~~L~Sgs~Dg~II~IWDv~tg~~ 718 (793)
+.. +.. +..++|. ++++ .|++++.++ + .-++..+.+.
T Consensus 252 ~~~---~~~-~~~~~f~~~d~~-~L~v~t~~~-l-~~~~~~~~~~ 289 (296)
T 3e5z_A 252 VLT---PQT-TSNLCFGGPEGR-TLYMTVSTE-F-WSIETNVRGL 289 (296)
T ss_dssp EEC---SSC-CCEEEEESTTSC-EEEEEETTE-E-EEEECSCCBC
T ss_pred EEC---CCC-ceeEEEECCCCC-EEEEEcCCe-E-EEEEcccccc
Confidence 653 223 7788885 6777 777777663 4 4556655543
No 184
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.45 E-value=1e-12 Score=143.65 Aligned_cols=236 Identities=10% Similarity=-0.081 Sum_probs=150.2
Q ss_pred EEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEE-------------------EEEeeCCCCEEEEE--
Q 003822 459 FEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLG-------------------LCWLKKYPSKLIAG-- 517 (793)
Q Consensus 459 vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~s-------------------v~fs~~~g~~Lasg-- 517 (793)
+.|+| +++.|+.++.++.|++||+.+++...... .+...... +.|+ ++++.++.+
T Consensus 86 ~~~sp-dg~~l~~~~~~~~l~~~d~~~~~~~~~~~--~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~s-pdg~~~~~~~~ 161 (396)
T 3c5m_A 86 GFIST-DERAFFYVKNELNLMKVDLETLEEQVIYT--VDEEWKGYGTWVANSDCTKLVGIEILKRDWQ-PLTSWEKFAEF 161 (396)
T ss_dssp CEECT-TSSEEEEEETTTEEEEEETTTCCEEEEEE--CCTTEEEEEEEEECTTSSEEEEEEEEGGGCC-CCCSHHHHHHH
T ss_pred ceECC-CCCEEEEEEcCCcEEEEECCCCCcEEEEe--cccccCCCCCEEEeccCCccccccccccccC-CCCcceeeeee
Confidence 67999 99999999999999999999887665554 22222212 2233 445544433
Q ss_pred ---EcCCcEEEEEcCCCCCcccccccCCceeEecCCCCeEEEEEcc-CCCEEEEEECC------CcEEEEECCCCcEEEE
Q 003822 518 ---SDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNS-MDELFLASGYS------KNIALYDINSGRRLQV 587 (793)
Q Consensus 518 ---s~DgtV~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~-~~~~lla~g~D------g~I~IWDl~tg~~l~~ 587 (793)
..+..|.+||+.+++... ...+...+..+.|+| ++..++.++.+ ..|.+||+..++.. .
T Consensus 162 ~~~~~~~~l~~~d~~~g~~~~----------~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~ 230 (396)
T 3c5m_A 162 YHTNPTCRLIKVDIETGELEV----------IHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR-K 230 (396)
T ss_dssp HHTCCCEEEEEEETTTCCEEE----------EEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE-E
T ss_pred ccCCCcceEEEEECCCCcEEe----------eccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCcee-E
Confidence 356689999998765311 112345678899988 56667666543 46899998765533 3
Q ss_pred EcccC-CCCeEEEEEcCCCCcEEEEEeCC-----CeEEEEECCCCCccceEEccCCCCeEEEEEec-CCCEEEEEe----
Q 003822 588 FADMH-KEHINVVKFSNHSPSIFATSSFD-----QDVKLWDLRQKPIQPCYTASSSKGNVMVCFSP-DDHYLLVSA---- 656 (793)
Q Consensus 588 ~~~gh-~~~V~sv~fspdg~~~LaTgs~D-----g~IrIWDlrt~~~~~~~~l~~~~~~vsv~fSp-dg~~Lasgs---- 656 (793)
+.... ...+..++|+|+| +.|+.++.+ +.|++||+.+++...+....+ .. +.|+| +|+++++++
T Consensus 231 l~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~---~~-~~~s~~dg~~l~~~~~~~p 305 (396)
T 3c5m_A 231 IKEHAEGESCTHEFWIPDG-SAMAYVSYFKGQTDRVIYKANPETLENEEVMVMPP---CS-HLMSNFDGSLMVGDGCDAP 305 (396)
T ss_dssp SSCCCTTEEEEEEEECTTS-SCEEEEEEETTTCCEEEEEECTTTCCEEEEEECCS---EE-EEEECSSSSEEEEEECCC-
T ss_pred eeccCCCccccceEECCCC-CEEEEEecCCCCccceEEEEECCCCCeEEeeeCCC---CC-CCccCCCCceEEEecCCcc
Confidence 33212 2357889999999 555555433 449999998876554443332 22 89999 999888765
Q ss_pred ------------CCCeEEEEEcCCCcEEEEEeeecCCC--------CCcEEEEEeeCCCeEEEEEe-CCCcEEEEE--Ec
Q 003822 657 ------------VDNEVRQLLAVDGRVHLNFGITATGS--------SQNYTRSYYLNGRDYIVSGS-CDEHVVRIC--CA 713 (793)
Q Consensus 657 ------------~Dg~I~IwDl~tg~~~~~l~~~~~~~--------~~v~s~afspdg~~~L~Sgs-~Dg~II~IW--Dv 713 (793)
.++.|++||+.+++.. .+......- ......+|+|+|+ .|+.++ .++.. .+| ++
T Consensus 306 ~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~-~l~~~s~~~~~~-~l~~~~~ 382 (396)
T 3c5m_A 306 VDVADADSYNIENDPFLYVLNTKAKSAQ-KLCKHSTSWDVLDGDRQITHPHPSFTPNDD-GVLFTSDFEGVP-AIYIADV 382 (396)
T ss_dssp ---------CCCCCCEEEEEETTTTBCC-EEEECCCCCCCBTTBSSTTCCCCEECTTSS-EEEEEECTTSSC-EEEEEEC
T ss_pred eeeccccccccCCCCcEEEEecccCceE-EccCCCCccccccccccCCCCCceEccCCC-eEEEEecCCCCc-eEEEEEE
Confidence 3478999999888753 332211100 0244578999998 555544 45555 555 44
Q ss_pred CCCc
Q 003822 714 QTGR 717 (793)
Q Consensus 714 ~tg~ 717 (793)
.+++
T Consensus 383 ~~~~ 386 (396)
T 3c5m_A 383 PESY 386 (396)
T ss_dssp CTTC
T ss_pred cccc
Confidence 4443
No 185
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.43 E-value=1e-11 Score=146.45 Aligned_cols=240 Identities=9% Similarity=0.018 Sum_probs=156.0
Q ss_pred EEEe--CCCCCE-EEEEeC-CCeEEEEECC--C-CeEEEEEeccC---CCCCEEEEEEeeCCCCEEEEEEcC--------
Q 003822 459 FEYH--PSISCL-MVFGTL-DGEIVVVNHE--N-ENIVSYIPSFG---AMNSVLGLCWLKKYPSKLIAGSDN-------- 520 (793)
Q Consensus 459 vafs--P~d~~~-Lasgs~-DG~I~VWd~~--t-~~~i~~l~~~~---h~~~V~sv~fs~~~g~~Lasgs~D-------- 520 (793)
..|+ | |++. |+.++. +..|.+|++. . ++ ...+.... |...+.+++|+ ++|+.|++++.+
T Consensus 82 ~~~~~SP-Dg~~~la~~~~~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~s-pDg~~l~~~~~~~~~~~~~~ 158 (662)
T 3azo_A 82 WAGVPRP-AGGPLLVFTHFGDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLL-PERGEVWCMAEEFTGEGPSD 158 (662)
T ss_dssp EEEECCS-SSSCEEEEEBTTTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEE-TTTTEEEEEEEEECSSSTTC
T ss_pred ceeeeec-CCCeEEEEEECCCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEEC-CCCCEEEEEEecccCCCCCC
Confidence 4455 8 7777 666554 5667777776 3 44 33343211 66788999998 799999998877
Q ss_pred --CcEEEEEcCC------CCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEECC--------CcEEEEECC-CC-
Q 003822 521 --GSLKLYDIRH------MPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYS--------KNIALYDIN-SG- 582 (793)
Q Consensus 521 --gtV~vWDl~~------~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~D--------g~I~IWDl~-tg- 582 (793)
..|.+||+.+ +... .+. ..+...+..++|+|++..++.++.+ ..|++||+. ++
T Consensus 159 ~~~~i~~~~~~~~~~~~~~~~~--~l~-------~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~ 229 (662)
T 3azo_A 159 VRRFLAAVPLDGSAAADRSAVR--ELS-------DDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGR 229 (662)
T ss_dssp EEEEEEEEETTSTTTTCGGGSE--ESS-------CSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSC
T ss_pred ceeEEEEEECCCCccccCCcee--EEE-------ecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCc
Confidence 5899999987 3321 111 0122456778999999999888754 379999999 57
Q ss_pred -cEEEEEcccCCCCeEEEEEcCCCCcEEEEEeCCC--eEEEEECCCCCccceEEccCCCC---------eEEEEEecCCC
Q 003822 583 -RRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQ--DVKLWDLRQKPIQPCYTASSSKG---------NVMVCFSPDDH 650 (793)
Q Consensus 583 -~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~Dg--~IrIWDlrt~~~~~~~~l~~~~~---------~vsv~fSpdg~ 650 (793)
.....+..+|...+..+.|+|+| +++++++.++ .|.+||+.+++...+. .++.. ...++|+|+++
T Consensus 230 ~~~~~~l~~~~~~~~~~~~~spdg-~l~~~~~~~~~~~l~~~~~~~~~~~~l~--~~~~~~~~p~w~~~~~~~~~~~~~~ 306 (662)
T 3azo_A 230 FADTRTLLGGPEEAIAQAEWAPDG-SLIVATDRTGWWNLHRVDPATGAATQLC--RREEEFAGPLWTPGMRWFAPLANGL 306 (662)
T ss_dssp EEEEEEEEEETTBCEEEEEECTTS-CEEEEECTTSSCEEEEECTTTCCEEESS--CCSSBSSCCCCSTTCCSEEECTTSC
T ss_pred ccccEEeCCCCCceEcceEECCCC-eEEEEECCCCCeEEEEEECCCCceeecc--cccccccCccccccCceEeEeCCCE
Confidence 23334433467899999999999 5888888888 5666776565432221 22211 22488999999
Q ss_pred EEEEEeCCCeEEEE--EcCCCcEEEEEeeecCCCCCcEEEEEeeCCCeEEEEE-eCCC--cEEEEEEcCCCcEEE
Q 003822 651 YLLVSAVDNEVRQL--LAVDGRVHLNFGITATGSSQNYTRSYYLNGRDYIVSG-SCDE--HVVRICCAQTGRRLR 720 (793)
Q Consensus 651 ~Lasgs~Dg~I~Iw--Dl~tg~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sg-s~Dg--~II~IWDv~tg~~l~ 720 (793)
++++++. +.+++| |..+++ +..+. .+...+..+ +++++..+++++ +.+. .+ .+||+.+++...
T Consensus 307 ~~~~~~~-~~~~l~~~d~~~~~-~~~l~---~~~~~~~~~-~s~~~~~~~~~~~~~~~~~~i-~~~d~~~g~~~~ 374 (662)
T 3azo_A 307 IAVVHGK-GAAVLGILDPESGE-LVDAA---GPWTEWAAT-LTVSGTRAVGVAASPRTAYEV-VELDTVTGRART 374 (662)
T ss_dssp EEEEEBS-SSCEEEEEETTTTE-EEECC---SSCCEEEEE-EEEETTEEEEEEEETTEEEEE-EEEETTTCCEEE
T ss_pred EEEEEEc-CccEEEEEECCCCc-EEEec---CCCCeEEEE-EecCCCEEEEEEcCCCCCCEE-EEEECCCCceEE
Confidence 9999998 999999 655565 44443 222233333 266666455444 4443 34 666777887554
No 186
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.43 E-value=3.9e-11 Score=143.42 Aligned_cols=250 Identities=6% Similarity=-0.028 Sum_probs=160.2
Q ss_pred CCCCCEEEEEEeeCCCCEEEEEEcCC-----cEEEEEcCCCCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEEC
Q 003822 496 GAMNSVLGLCWLKKYPSKLIAGSDNG-----SLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY 570 (793)
Q Consensus 496 ~h~~~V~sv~fs~~~g~~Lasgs~Dg-----tV~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~ 570 (793)
+|...+..++|+ ++|++|+.++.++ +|++||+.+++..... ..+ ..+.+++|+|++..++.++.
T Consensus 122 ~~~~~~~~~~~S-PDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~---------~~~-~~~~~~~wspDg~~l~~~~~ 190 (710)
T 2xdw_A 122 DGTVALRGYAFS-EDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDV---------LER-VKFSCMAWTHDGKGMFYNAY 190 (710)
T ss_dssp TSCEEEEEEEEC-TTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEE---------EEE-ECSCCEEECTTSSEEEEEEC
T ss_pred CCCEEEEEEEEC-CCCCEEEEEEcCCCCceEEEEEEECCCCCCCccc---------ccC-cccceEEEEeCCCEEEEEEE
Confidence 344568899998 8999988776543 8999999987642111 111 12567899999999999987
Q ss_pred CCc----------------EEEEECCCCcE--EEEEcc-cCCCCeEEEEEcCCCCcEEEEEeC-----CCeEEEEECCC-
Q 003822 571 SKN----------------IALYDINSGRR--LQVFAD-MHKEHINVVKFSNHSPSIFATSSF-----DQDVKLWDLRQ- 625 (793)
Q Consensus 571 Dg~----------------I~IWDl~tg~~--l~~~~~-gh~~~V~sv~fspdg~~~LaTgs~-----Dg~IrIWDlrt- 625 (793)
++. |++|++.+++. ...+.. .|...+..+.|+|+| ++|+.++. +..|++||+.+
T Consensus 191 ~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg-~~l~~~~~~~~~~~~~l~~~d~~~~ 269 (710)
T 2xdw_A 191 PQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDG-RYVLLSIREGCDPVNRLWYCDLQQE 269 (710)
T ss_dssp CCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTS-CEEEEEEECSSSSCCEEEEEEGGGS
T ss_pred CCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCC-CEEEEEEEccCCCccEEEEEECccc
Confidence 655 99999998762 223331 256678899999999 66666554 56899999976
Q ss_pred -----CCccceEEccCCCCeEEEEEecCCCEEEEEeCC----CeEEEEEcCCCcE--EEEEeeecCCC-CCcEEEEEeeC
Q 003822 626 -----KPIQPCYTASSSKGNVMVCFSPDDHYLLVSAVD----NEVRQLLAVDGRV--HLNFGITATGS-SQNYTRSYYLN 693 (793)
Q Consensus 626 -----~~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs~D----g~I~IwDl~tg~~--~~~l~~~~~~~-~~v~s~afspd 693 (793)
+.. ....+..+.......|+|+|+.|+..+.. +.|.+||+.++.. ...+. .... ..+..++|+++
T Consensus 270 ~~~~~~~~-~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~ 346 (710)
T 2xdw_A 270 SNGITGIL-KWVKLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLV--PEHEKDVLEWVACVRS 346 (710)
T ss_dssp SSSSCSSC-CCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEE--CCCSSCEEEEEEEETT
T ss_pred ccccCCcc-ceEEeeCCCCcEEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceecc--CCCCCCeEEEEEEEcC
Confidence 421 12222233333334689999988877653 3699999987741 22332 1112 24556777755
Q ss_pred CCeEEEEEeCCCcE-EEEEEcCCCcEEEeeeecCCCCCccceeeeccCCccccCCccEEEEEEcCCCCceeeEeeEEEeC
Q 003822 694 GRDYIVSGSCDEHV-VRICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKSEIVKVNLLAST 772 (793)
Q Consensus 694 g~~~L~Sgs~Dg~I-I~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~~~~iv~~~ltaS~ 772 (793)
+. +++++..|+.. |++|++.+|+.+. .+..+. +.|.+++++|++...++ ..-....
T Consensus 347 ~~-lv~~~~~~g~~~l~~~~~~~g~~~~--~l~~~~-------------------~~v~~~~~s~d~~~l~~-~~ss~~~ 403 (710)
T 2xdw_A 347 NF-LVLCYLHDVKNTLQLHDLATGALLK--IFPLEV-------------------GSVVGYSGQKKDTEIFY-QFTSFLS 403 (710)
T ss_dssp TE-EEEEEEETTEEEEEEEETTTCCEEE--EECCCS-------------------SEEEEEECCTTCSEEEE-EEECSSC
T ss_pred CE-EEEEEEECCEEEEEEEECCCCCEEE--ecCCCC-------------------ceEEEEecCCCCCEEEE-EEeCCCC
Confidence 55 88888888854 2677877888776 444332 35677778885433222 1011123
Q ss_pred CCcEEEEcCCC
Q 003822 773 DHCDKECSHGQ 783 (793)
Q Consensus 773 Dg~VkvW~~~~ 783 (793)
.++|..|+...
T Consensus 404 P~~i~~~d~~t 414 (710)
T 2xdw_A 404 PGIIYHCDLTK 414 (710)
T ss_dssp CCEEEEEETTS
T ss_pred CCEEEEEECCC
Confidence 57788887654
No 187
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.42 E-value=1.6e-11 Score=127.28 Aligned_cols=242 Identities=11% Similarity=0.107 Sum_probs=164.3
Q ss_pred ceEEEEEeCCCCCEEE-EEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCC
Q 003822 455 RPRQFEYHPSISCLMV-FGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPP 533 (793)
Q Consensus 455 ~V~~vafsP~d~~~La-sgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~ 533 (793)
.+.+++++| ++.+++ +.+.++.|.+|+..++... .+. ..+...+.++++. ++++++++.. ++.|.+||......
T Consensus 25 ~p~~i~~~~-~g~l~v~~~~~~~~i~~~~~~~~~~~-~~~-~~~~~~p~~i~~~-~~g~l~v~~~-~~~i~~~d~~~~~~ 99 (270)
T 1rwi_B 25 SPSGVAVDS-AGNVYVTSEGMYGRVVKLATGSTGTT-VLP-FNGLYQPQGLAVD-GAGTVYVTDF-NNRVVTLAAGSNNQ 99 (270)
T ss_dssp CEEEEEECT-TCCEEEEECSSSCEEEEECC-----E-ECC-CCSCCSCCCEEEC-TTCCEEEEET-TTEEEEECTTCSCC
T ss_pred CccceEECC-CCCEEEEccCCCCcEEEecCCCcccc-eEe-eCCcCCcceeEEC-CCCCEEEEcC-CCEEEEEeCCCceE
Confidence 389999999 788777 5477899999997655432 222 1333567888986 6777655555 88999999876443
Q ss_pred cccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEe
Q 003822 534 SIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSS 613 (793)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs 613 (793)
... .......+.++++.+++..+++...++.|.+|+..+........ .....+.+++++++| +++++..
T Consensus 100 ~~~---------~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~-~~~~~p~~i~~~~~g-~l~v~~~ 168 (270)
T 1rwi_B 100 TVL---------PFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPF-TGLNDPDGVAVDNSG-NVYVTDT 168 (270)
T ss_dssp EEC---------CCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCC-CSCCSCCCEEECTTC-CEEEEEG
T ss_pred eee---------ecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeecc-ccCCCceeEEEeCCC-CEEEEEC
Confidence 111 11122467899998877755555567899999876554433222 233467899999998 7777777
Q ss_pred CCCeEEEEECCCCCccceEEccCCCCeEEEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeC
Q 003822 614 FDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLN 693 (793)
Q Consensus 614 ~Dg~IrIWDlrt~~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspd 693 (793)
.++.|.+||........ ....+...+..++++++|...++...++.|.+||........ . ...+...+..+++.++
T Consensus 169 ~~~~i~~~~~~~~~~~~-~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~-~--~~~~~~~p~~i~~~~~ 244 (270)
T 1rwi_B 169 DNNRVVKLEAESNNQVV-LPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV-L--PFTGLNTPLAVAVDSD 244 (270)
T ss_dssp GGTEEEEECTTTCCEEE-CCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEE-C--CCCSCSCEEEEEECTT
T ss_pred CCCEEEEEecCCCceEe-ecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCccee-e--ccCCCCCceeEEECCC
Confidence 78899999987753221 111222456679999999777776678899999986654322 1 1123356788999999
Q ss_pred CCeEEEEEeCCCcEEEEEEcCCCcE
Q 003822 694 GRDYIVSGSCDEHVVRICCAQTGRR 718 (793)
Q Consensus 694 g~~~L~Sgs~Dg~II~IWDv~tg~~ 718 (793)
|. ++++...+++| ++++....+.
T Consensus 245 g~-l~v~~~~~~~v-~~~~~~~~~~ 267 (270)
T 1rwi_B 245 RT-VYVADRGNDRV-VKLTSLEHHH 267 (270)
T ss_dssp CC-EEEEEGGGTEE-EEECCCGGGS
T ss_pred CC-EEEEECCCCEE-EEEcCCCccc
Confidence 97 88888889999 9998866543
No 188
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.40 E-value=6.5e-11 Score=125.17 Aligned_cols=240 Identities=13% Similarity=0.032 Sum_probs=172.7
Q ss_pred CCEEEEEeCCCeEEEEECCCCeEEEEEeccCCC-CCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcccccccCCce
Q 003822 466 SCLMVFGTLDGEIVVVNHENENIVSYIPSFGAM-NSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGT 544 (793)
Q Consensus 466 ~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~-~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~~~~~~~~~~ 544 (793)
+++|++++.++.|.+||.++|+.+..+.. +. ..+.++.++ ++|++++ +.++.|..||. +++.......
T Consensus 5 ~~~lv~~~~~~~v~~~d~~tG~~~w~~~~--~~~~~~~~~~~~-pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~----- 73 (276)
T 3no2_A 5 QHLLVGGSGWNKIAIINKDTKEIVWEYPL--EKGWECNSVAAT-KAGEILF--SYSKGAKMITR-DGRELWNIAA----- 73 (276)
T ss_dssp CEEEEECTTCSEEEEEETTTTEEEEEEEC--CTTCCCCEEEEC-TTSCEEE--ECBSEEEEECT-TSCEEEEEEC-----
T ss_pred CcEEEeeCCCCEEEEEECCCCeEEEEeCC--CccCCCcCeEEC-CCCCEEE--eCCCCEEEECC-CCCEEEEEcC-----
Confidence 57899999999999999999999988874 32 457788887 7898888 45778999998 6554322111
Q ss_pred eEecCCCCeEEEEEccCCCEEEEEEC-CCcEEEEECCCCcEEEEEcc-----cCCCCeEEEEEcCCCCcEEEEEeCCCeE
Q 003822 545 VTFDEFDQLTSVHVNSMDELFLASGY-SKNIALYDINSGRRLQVFAD-----MHKEHINVVKFSNHSPSIFATSSFDQDV 618 (793)
Q Consensus 545 ~~~~~~~~V~sv~~s~~~~~lla~g~-Dg~I~IWDl~tg~~l~~~~~-----gh~~~V~sv~fspdg~~~LaTgs~Dg~I 618 (793)
.....+.++.+.++++.+++.+. ++.|..+|. +|+.+..+.. ++......+++.++| +++++...++.|
T Consensus 74 ---~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G-~~lv~~~~~~~v 148 (276)
T 3no2_A 74 ---PAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKG-NYLVPLFATSEV 148 (276)
T ss_dssp ---CTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTS-CEEEEETTTTEE
T ss_pred ---CCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCC-CEEEEecCCCEE
Confidence 11135778888888888888887 788888886 6888777651 122345567788998 899999999999
Q ss_pred EEEECCCCCccceEEccCCCCeEEEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCC---CCCcEEEEEeeCCC
Q 003822 619 KLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATG---SSQNYTRSYYLNGR 695 (793)
Q Consensus 619 rIWDlrt~~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~---~~~v~s~afspdg~ 695 (793)
..||.. ++. +........+..+...++|+.+++++.++.|..+|..+|+.+.++...... -..+..+...++|.
T Consensus 149 ~~~d~~-G~~--~w~~~~~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~ 225 (276)
T 3no2_A 149 REIAPN-GQL--LNSVKLSGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGG 225 (276)
T ss_dssp EEECTT-SCE--EEEEECSSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSC
T ss_pred EEECCC-CCE--EEEEECCCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCC
Confidence 999987 643 444444445556788899999999988889999999999998888632111 12356677788887
Q ss_pred eEEEEEe--CC------CcEEEEEEc-CCCcEEEeeeecCCC
Q 003822 696 DYIVSGS--CD------EHVVRICCA-QTGRRLRDISLEGKG 728 (793)
Q Consensus 696 ~~L~Sgs--~D------g~II~IWDv-~tg~~l~~~~L~gh~ 728 (793)
++++.+ .. +.. +++++ .+|+.+. ++..+.
T Consensus 226 -i~v~~~~g~~~~~~~~~~~-~~~~~~~~g~~~W--~~~~~~ 263 (276)
T 3no2_A 226 -LYICNWQGHDREAGKGKHP-QLVEIDSEGKVVW--QLNDKV 263 (276)
T ss_dssp -EEEEEECTTCTTGGGSCCC-SEEEECTTSBEEE--EECCTT
T ss_pred -EEEEeccCccccccccCCc-eEEEECCCCCEEE--EecCcc
Confidence 555543 11 233 55666 6788887 655543
No 189
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.36 E-value=2.9e-11 Score=144.23 Aligned_cols=235 Identities=10% Similarity=-0.015 Sum_probs=147.1
Q ss_pred CCCEEEEEeCCC-----eEEEEECCCCeEEEEEec----cCCCCCEEEEEEeeCCCCEEEE-----EEcCCcEEEEEcCC
Q 003822 465 ISCLMVFGTLDG-----EIVVVNHENENIVSYIPS----FGAMNSVLGLCWLKKYPSKLIA-----GSDNGSLKLYDIRH 530 (793)
Q Consensus 465 d~~~Lasgs~DG-----~I~VWd~~t~~~i~~l~~----~~h~~~V~sv~fs~~~g~~Las-----gs~DgtV~vWDl~~ 530 (793)
+|.+++....++ .|.+.+...++....+.. .+|...+.+++|+ ++|++||. |+.+.+|++||+.+
T Consensus 78 dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~S-PDG~~la~~~~~~G~~~~~i~v~dl~t 156 (695)
T 2bkl_A 78 RNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVS-WDGKKVAFAQKPNAADEAVLHVIDVDS 156 (695)
T ss_dssp ETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEEC-TTSSEEEEEEEETTCSCCEEEEEETTT
T ss_pred ECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEEC-CCCCEEEEEECCCCCceEEEEEEECCC
Confidence 566666555433 344445545543333321 2455678999998 89998884 34456899999998
Q ss_pred CCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCc-------------EEEEECCCCc----EEEEEcccCC
Q 003822 531 MPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKN-------------IALYDINSGR----RLQVFADMHK 593 (793)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~-------------I~IWDl~tg~----~l~~~~~gh~ 593 (793)
++...... .. ......++|+|++..++.++.+.. |++|++.+++ .+.... .|.
T Consensus 157 g~~~~~~~--------~~-~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~-~~~ 226 (695)
T 2bkl_A 157 GEWSKVDV--------IE-GGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERT-GDP 226 (695)
T ss_dssp CCBCSSCC--------BS-CCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCC-CCT
T ss_pred CCCcCCcc--------cC-cccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecC-CCC
Confidence 76520100 00 011257889999999999988765 9999999876 233322 356
Q ss_pred CCeEEEEEcCCCCcEEEEEeCCC----eEEEEECCCCCccceEEccCCCCeEEEEEecCCCEEEEEeC----CCeEEEEE
Q 003822 594 EHINVVKFSNHSPSIFATSSFDQ----DVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLVSAV----DNEVRQLL 665 (793)
Q Consensus 594 ~~V~sv~fspdg~~~LaTgs~Dg----~IrIWDlrt~~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs~----Dg~I~IwD 665 (793)
..+..+.|+|+| ++++.++.++ .|.+||..++....+.. .........+ ++|. ++..+. ++.|.+||
T Consensus 227 ~~~~~~~~SpDG-~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~--~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d 301 (695)
T 2bkl_A 227 TTFLQSDLSRDG-KYLFVYILRGWSENDVYWKRPGEKDFRLLVK--GVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVD 301 (695)
T ss_dssp TCEEEEEECTTS-CCEEEEEEETTTEEEEEEECTTCSSCEEEEE--CSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEB
T ss_pred EEEEEEEECCCC-CEEEEEEeCCCCceEEEEEcCCCCceEEeec--CCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEe
Confidence 788999999999 6666655554 57777665543333322 2334445555 6677 555443 57899999
Q ss_pred cCCCcE--EEEEeeecCC-CCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcC-CCcEEE
Q 003822 666 AVDGRV--HLNFGITATG-SSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQ-TGRRLR 720 (793)
Q Consensus 666 l~tg~~--~~~l~~~~~~-~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~-tg~~l~ 720 (793)
+.++.. ...+. ... ...+..++++ ++. +++++..|+.. +||.+. +|+.+.
T Consensus 302 ~~~~~~~~~~~l~--~~~~~~~l~~~~~~-~~~-lv~~~~~dg~~-~l~~~~~~g~~~~ 355 (695)
T 2bkl_A 302 PAKPARASWKEIV--PEDSSASLLSVSIV-GGH-LSLEYLKDATS-EVRVATLKGKPVR 355 (695)
T ss_dssp TTBCSGGGCEEEE--CCCSSCEEEEEEEE-TTE-EEEEEEETTEE-EEEEEETTCCEEE
T ss_pred CCCCCccCCeEEe--cCCCCCeEEEEEEE-CCE-EEEEEEECCEE-EEEEEeCCCCeeE
Confidence 987752 12222 112 2335556676 444 88999999988 888665 466555
No 190
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.36 E-value=1.5e-10 Score=124.49 Aligned_cols=231 Identities=11% Similarity=0.051 Sum_probs=148.9
Q ss_pred eEEEEEeCCCCCEEEEEeCC---C--eEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcC----------
Q 003822 456 PRQFEYHPSISCLMVFGTLD---G--EIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDN---------- 520 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~D---G--~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~D---------- 520 (793)
+..++|+| +++.|+.++.+ + .|.+|++.+++...... +.. +..++|+ ++++.|+.++.+
T Consensus 61 ~~~~~~Sp-Dg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~---~~~-~~~~~ws-pdg~~l~~~~~~~~~~~~~~~~ 134 (347)
T 2gop_A 61 ATMPRISP-DGKKIAFMRANEEKKVSEIWVADLETLSSKKILE---AKN-IRSLEWN-EDSRKLLIVGFKRREDEDFIFE 134 (347)
T ss_dssp CEEEEECT-TSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEE---ESE-EEEEEEC-TTSSEEEEEEECCCC-------
T ss_pred CCCeEECC-CCCEEEEEEeccCCCcceEEEEECCCCceEEEEc---CCC-ccceeEC-CCCCEEEEEEccCCCcCCcEEE
Confidence 67899999 89988887754 3 48888998887665543 223 9999998 788888887643
Q ss_pred -----------------CcEEEEEcCCCCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEECC------C-cEEE
Q 003822 521 -----------------GSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYS------K-NIAL 576 (793)
Q Consensus 521 -----------------gtV~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~D------g-~I~I 576 (793)
..|.+||+.+++.. . .+.. . .+..+.|+|++ .++++..+ . ...|
T Consensus 135 ~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~-~-------~l~~--~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l 202 (347)
T 2gop_A 135 DDVPAWFDDLGFFDGEKTTFWIFDTESEEVI-E-------EFEK--P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDI 202 (347)
T ss_dssp --CCCC---------CEEEEEEEETTTTEEE-E-------EEEE--E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEE
T ss_pred cccceeecCcccccCccceEEEEECCCCeEE-e-------eecC--C-CcccccCCCCe-EEEEEecccccccccccccE
Confidence 56888998775430 1 1111 1 56788998887 55555443 2 3344
Q ss_pred EECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeCC--------CeEEEEECCCCCccceEEccCCCCeE-E-EEEe
Q 003822 577 YDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFD--------QDVKLWDLRQKPIQPCYTASSSKGNV-M-VCFS 646 (793)
Q Consensus 577 WDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~D--------g~IrIWDlrt~~~~~~~~l~~~~~~v-s-v~fS 646 (793)
|.+.+++. ..+.. + ..+..+ +|+| +.|+.++.+ ..|.+|| +++. .....++...+ . +.|+
T Consensus 203 ~~~d~~~~-~~l~~-~-~~~~~~--spdg-~~l~~~~~~~~~~~~~~~~l~~~d--~~~~--~~l~~~~~~~~~~~~~~s 272 (347)
T 2gop_A 203 YIWEDGKE-EKMFE-K-VSFYAV--DSDG-ERILLYGKPEKKYMSEHNKLYIYD--GKEV--MGILDEVDRGVGQAKIKD 272 (347)
T ss_dssp EEEETTEE-EEEEE-E-ESEEEE--EECS-SCEEEEECCSSSCCCSSCEEEEEC--SSCE--EESSTTCCSEEEEEEEET
T ss_pred EEeCCCce-EEecc-C-cceeeE--CCCC-CEEEEEEccccCCccccceEEEEC--CCce--EeccccCCcccCCccEEc
Confidence 44445544 44442 4 555554 9999 666665543 3688888 4432 22233434444 3 8899
Q ss_pred cCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEEeeeecC
Q 003822 647 PDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRLRDISLEG 726 (793)
Q Consensus 647 pdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~g 726 (793)
+| .+++++.++.+++| +.+++..... .+...+..++|+| . ++++++.++....+|.+. |+ .. .+.+
T Consensus 273 -dg-~~~~~~~~~~~~l~-~~~g~~~~~~----~~~~~v~~~~~s~--~-~~~~~~~~~~~~~l~~~~-g~-~~--~lt~ 338 (347)
T 2gop_A 273 -GK-VYFTLFEEGSVNLY-IWDGEIKPIA----KGRHWIMGFDVDE--I-VVYLKETATRLRELFTWD-GE-EK--QLTD 338 (347)
T ss_dssp -TE-EEEEEEETTEEEEE-EESSSEEEEE----CSSSEEEEEEESS--S-EEEEEECSSSCCEEEEES-SS-EE--ECCC
T ss_pred -Cc-EEEEEecCCcEEEE-EcCCceEEEe----cCCCeEEeeeeeC--c-EEEEEcCCCChHHheEeC-Cc-EE--Eecc
Confidence 88 88899999999999 8777653332 2345677888888 4 777777666432677666 55 34 4555
Q ss_pred CC
Q 003822 727 KG 728 (793)
Q Consensus 727 h~ 728 (793)
++
T Consensus 339 ~n 340 (347)
T 2gop_A 339 YN 340 (347)
T ss_dssp TT
T ss_pred cc
Confidence 54
No 191
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.36 E-value=1.8e-09 Score=125.71 Aligned_cols=301 Identities=9% Similarity=0.027 Sum_probs=191.7
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECC--CCeEEEEEeccCCCCCEEEEEEee---CCCCEEEEEE-cCCcEEEEEcC
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHE--NENIVSYIPSFGAMNSVLGLCWLK---KYPSKLIAGS-DNGSLKLYDIR 529 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~--t~~~i~~l~~~~h~~~V~sv~fs~---~~g~~Lasgs-~DgtV~vWDl~ 529 (793)
+..+.|+| +++++++++.|+.|.+||+. +++.+..+.. + .....++|++ ++|+++++++ .+++|.++|..
T Consensus 199 p~~v~~Sp-DGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~-G--~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~ 274 (567)
T 1qks_A 199 VHISRLSA-SGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI-G--SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGE 274 (567)
T ss_dssp EEEEEECT-TSCEEEEEETTSEEEEEETTSSSCCEEEEEEC-C--SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETT
T ss_pred ccceEECC-CCCEEEEEcCCCeEEEEECCCCCCcEeEEEec-C--CCCceeEEccccCCCCCEEEEEEccCCeEEEEECC
Confidence 67899999 99999999999999999995 8888887764 2 2467899985 5888877765 56999999988
Q ss_pred CCCCcccccccC--CceeEecCCCCeEEEEEccCCCEEEEEE-CCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCC
Q 003822 530 HMPPSIRGMHYG--AGTVTFDEFDQLTSVHVNSMDELFLASG-YSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSP 606 (793)
Q Consensus 530 ~~~~~~~~~~~~--~~~~~~~~~~~V~sv~~s~~~~~lla~g-~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~ 606 (793)
+.+......... .....+.....+..+..++.+..+++.- .+|.|.++|..+.+.+....-........+.|+|++.
T Consensus 275 t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr 354 (567)
T 1qks_A 275 TLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHR 354 (567)
T ss_dssp TCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSC
T ss_pred CCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCC
Confidence 765422111000 0000011122577888877777766665 4699999999876433322212445677899999994
Q ss_pred cEEEEEeCCCeEEEEECCCCCccceEEc-c--CCC-CeEEEEEecCCCEEEE-Ee-CCCeEEEEEcCC-------CcEEE
Q 003822 607 SIFATSSFDQDVKLWDLRQKPIQPCYTA-S--SSK-GNVMVCFSPDDHYLLV-SA-VDNEVRQLLAVD-------GRVHL 673 (793)
Q Consensus 607 ~~LaTgs~Dg~IrIWDlrt~~~~~~~~l-~--~~~-~~vsv~fSpdg~~Las-gs-~Dg~I~IwDl~t-------g~~~~ 673 (793)
.++++...++.|.++|+.+++....... . .|. .... -++|++..+++ +. .++.|.++|..+ .+.+.
T Consensus 355 ~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~-~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~ 433 (567)
T 1qks_A 355 YFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGAN-FVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILD 433 (567)
T ss_dssp EEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEE-EEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEE
T ss_pred EEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCcccee-eECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEE
Confidence 4455555688999999999854444333 1 121 1112 26888555544 43 468999999988 67777
Q ss_pred EEeeecCCCCCcEEEEEeeCCCeEEEEEeC-------CCcEEEEEEcCCC-----cEE-EeeeecCCCCCccceeeeccC
Q 003822 674 NFGITATGSSQNYTRSYYLNGRDYIVSGSC-------DEHVVRICCAQTG-----RRL-RDISLEGKGSGTSMFVQSLRG 740 (793)
Q Consensus 674 ~l~~~~~~~~~v~s~afspdg~~~L~Sgs~-------Dg~II~IWDv~tg-----~~l-~~~~L~gh~~~~s~~v~sl~g 740 (793)
++... .....-+..+|+++ ++.+... ..+| .|+|+.+. ... . .+. +....+
T Consensus 434 ~i~~~---g~g~~~i~~~p~~~-~l~v~~~~~~~~~~~~~v-~v~d~~~~~~~g~~~~~~--~~~---------~~~~~~ 497 (567)
T 1qks_A 434 SFPAL---GGGSLFIKTHPNSQ-YLYVDATLNPEAEISGSV-AVFDIKAMTGDGSDPEFK--TLP---------IAEWAG 497 (567)
T ss_dssp EEECS---CSCCCCEECCTTCS-EEEEECTTCSSHHHHTCE-EEEEGGGCCCSSSCCCEE--EEC---------HHHHHT
T ss_pred EEecC---CCCCEEEEeCCCCC-eEEEecCCCCCcccCceE-EEEECCcccccccCCCcE--Eec---------cccccc
Confidence 77642 22334566899998 6666542 3588 99999876 211 2 111 000000
Q ss_pred CccccCCccEEEEEEcCCCCceeeEeeEEEe----CCCcEEEEcCCC
Q 003822 741 DPFRDFNMSILAAYTRPSSKSEIVKVNLLAS----TDHCDKECSHGQ 783 (793)
Q Consensus 741 ~~~~~h~~~V~sva~~P~~~~~iv~~~ltaS----~Dg~VkvW~~~~ 783 (793)
.+ .-...+..+.|+|++....+ +.. .++.|-|.+...
T Consensus 498 ~~--~~~~~~~~~~~~~~G~~~~~----s~~~~~~~~~~i~v~D~~t 538 (567)
T 1qks_A 498 IT--EGQPRVVQGEFNKDGTEVWF----SVWNGKDQESALVVVDDKT 538 (567)
T ss_dssp CC--SSCCEEEEEEECTTSSEEEE----EEECCTTSCCEEEEEETTT
T ss_pred cC--CCCcceEeeeECCCCCEEEE----EeecCCCCCCcEEEEECCC
Confidence 00 00135888999997665444 322 368888877543
No 192
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.35 E-value=4.2e-10 Score=118.83 Aligned_cols=231 Identities=10% Similarity=0.043 Sum_probs=152.2
Q ss_pred CCCCCEEEEEEeeCCCC-EEEEEEcCCcEEEEEcCCCCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcE
Q 003822 496 GAMNSVLGLCWLKKYPS-KLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNI 574 (793)
Q Consensus 496 ~h~~~V~sv~fs~~~g~-~Lasgs~DgtV~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I 574 (793)
.+.....+++|. ++++ +++++..++.|..||..++ . ... ..+...+.++++++++..+++...++.|
T Consensus 25 ~~~~~~eg~~~d-~~g~~l~~~~~~~~~i~~~~~~~~-~--~~~--------~~~~~~~~~l~~~~dg~l~v~~~~~~~i 92 (296)
T 3e5z_A 25 DGFTWTEGPVYV-PARSAVIFSDVRQNRTWAWSDDGQ-L--SPE--------MHPSHHQNGHCLNKQGHLIACSHGLRRL 92 (296)
T ss_dssp CCCSSEEEEEEE-GGGTEEEEEEGGGTEEEEEETTSC-E--EEE--------ESSCSSEEEEEECTTCCEEEEETTTTEE
T ss_pred cCCccccCCeEe-CCCCEEEEEeCCCCEEEEEECCCC-e--EEE--------ECCCCCcceeeECCCCcEEEEecCCCeE
Confidence 345567899998 6777 7888888999999999875 2 111 1233568899998877765555457899
Q ss_pred EEEECCCCcEEEEEcc---cCCCCeEEEEEcCCCCcEEEEE----e-------------CCCeEEEEECCCCCccceEEc
Q 003822 575 ALYDINSGRRLQVFAD---MHKEHINVVKFSNHSPSIFATS----S-------------FDQDVKLWDLRQKPIQPCYTA 634 (793)
Q Consensus 575 ~IWDl~tg~~l~~~~~---gh~~~V~sv~fspdg~~~LaTg----s-------------~Dg~IrIWDlrt~~~~~~~~l 634 (793)
.+||..+++....... .....++.++++|+| +++++. + ..+.|..+|.. +... ...
T Consensus 93 ~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G-~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~--~~~ 168 (296)
T 3e5z_A 93 ERQREPGGEWESIADSFEGKKLNSPNDVCLAPDG-SLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLS--API 168 (296)
T ss_dssp EEECSTTCCEEEEECEETTEECCCCCCEEECTTS-CEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEE--EEE
T ss_pred EEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCC-CEEEECCccccccccccccccccCCCcEEEEECCC-CCEE--Eee
Confidence 9999988876544321 112356789999999 788773 2 13456666654 3222 222
Q ss_pred cCCCCeEEEEEecCCCEEEEEeCCCeEEEEEcC-CCcE---EEEEeeecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEE
Q 003822 635 SSSKGNVMVCFSPDDHYLLVSAVDNEVRQLLAV-DGRV---HLNFGITATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRI 710 (793)
Q Consensus 635 ~~~~~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~-tg~~---~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~I 710 (793)
.....+..++|+|+|+.+++.+.++.|.+|++. +|+. ...+ ......+..+++.++|. +.++. ++.| .+
T Consensus 169 ~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~---~~~~~~p~~i~~d~~G~-l~v~~--~~~v-~~ 241 (296)
T 3e5z_A 169 RDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHF---TVEPGKTDGLRVDAGGL-IWASA--GDGV-HV 241 (296)
T ss_dssp CCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEE---CCSSSCCCSEEEBTTSC-EEEEE--TTEE-EE
T ss_pred cCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEe---eCCCCCCCeEEECCCCC-EEEEc--CCeE-EE
Confidence 333345569999999999777778999999987 5655 2222 22334456789999998 44444 7788 99
Q ss_pred EEcCCCcEEEeeeecCCCCCccceeeeccCCccccCCccEEEEEE-cCCCCceeeEeeEEEeCCCcEE
Q 003822 711 CCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYT-RPSSKSEIVKVNLLASTDHCDK 777 (793)
Q Consensus 711 WDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~-~P~~~~~iv~~~ltaS~Dg~Vk 777 (793)
||.. |+.+. .+..+. . +.+++| .|+ ...++ +++.++..+
T Consensus 242 ~~~~-g~~~~--~~~~~~-------------------~-~~~~~f~~~d-~~~L~----v~t~~~l~~ 281 (296)
T 3e5z_A 242 LTPD-GDELG--RVLTPQ-------------------T-TSNLCFGGPE-GRTLY----MTVSTEFWS 281 (296)
T ss_dssp ECTT-SCEEE--EEECSS-------------------C-CCEEEEESTT-SCEEE----EEETTEEEE
T ss_pred ECCC-CCEEE--EEECCC-------------------C-ceeEEEECCC-CCEEE----EEcCCeEEE
Confidence 9986 77776 444332 2 667788 464 33444 667664433
No 193
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.34 E-value=3.5e-10 Score=119.63 Aligned_cols=245 Identities=10% Similarity=0.070 Sum_probs=161.4
Q ss_pred eEEEEEeCCCCCEEEE-------EeCCCeEEEEECCCCeEEEEEe--ccCCCCCEEEEEEeeCC-CCEEEEEEcCCcEEE
Q 003822 456 PRQFEYHPSISCLMVF-------GTLDGEIVVVNHENENIVSYIP--SFGAMNSVLGLCWLKKY-PSKLIAGSDNGSLKL 525 (793)
Q Consensus 456 V~~vafsP~d~~~Las-------gs~DG~I~VWd~~t~~~i~~l~--~~~h~~~V~sv~fs~~~-g~~Lasgs~DgtV~v 525 (793)
+.+++|++ ++.++++ +..++.|.+||..+++...... ..++...+.++++. ++ ++ +..++..+.|.+
T Consensus 20 ~~~~~~~~-~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~-~~~g~-l~v~~~~~~l~~ 96 (314)
T 1pjx_A 20 AEGPVFDK-NGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCD-RDANQ-LFVADMRLGLLV 96 (314)
T ss_dssp CEEEEECT-TSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEEC-SSSSE-EEEEETTTEEEE
T ss_pred ccCceECC-CCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEe-cCCCc-EEEEECCCCEEE
Confidence 78899998 8888888 6778999999988887643221 01244678999986 56 55 444444557999
Q ss_pred EEcCCCCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEECC---------------CcEEEEECCCCcEEEEEcc
Q 003822 526 YDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYS---------------KNIALYDINSGRRLQVFAD 590 (793)
Q Consensus 526 WDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~D---------------g~I~IWDl~tg~~l~~~~~ 590 (793)
||.. ++........... .....+.++++.+++..+++...+ +.|..||.. ++......
T Consensus 97 ~d~~-g~~~~~~~~~~~~----~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~- 169 (314)
T 1pjx_A 97 VQTD-GTFEEIAKKDSEG----RRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDT- 169 (314)
T ss_dssp EETT-SCEEECCSBCTTS----CBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEE-
T ss_pred EeCC-CCEEEEEeccCCC----ccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEecc-
Confidence 9987 5431110100000 112347899998877666655444 567777766 55444333
Q ss_pred cCCCCeEEEEEc----CCCCcEEEEEeCCCeEEEEECC-CCCcc---ceEEccCC--CCeEEEEEecCCCEEEEEeCCCe
Q 003822 591 MHKEHINVVKFS----NHSPSIFATSSFDQDVKLWDLR-QKPIQ---PCYTASSS--KGNVMVCFSPDDHYLLVSAVDNE 660 (793)
Q Consensus 591 gh~~~V~sv~fs----pdg~~~LaTgs~Dg~IrIWDlr-t~~~~---~~~~l~~~--~~~vsv~fSpdg~~Lasgs~Dg~ 660 (793)
+......++|+ |++..++++...++.|.+||.. ++... ....+..+ ..+..++++++|+..++...++.
T Consensus 170 -~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~ 248 (314)
T 1pjx_A 170 -AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSH 248 (314)
T ss_dssp -EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTE
T ss_pred -CCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCE
Confidence 44567899999 9983344555668899999986 33211 22233333 23456999999998888778899
Q ss_pred EEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCC
Q 003822 661 VRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQT 715 (793)
Q Consensus 661 I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~t 715 (793)
|.+||..+++....+.. +...+..++++++|..++++...++.| ..|++.+
T Consensus 249 i~~~d~~~g~~~~~~~~---~~~~~~~i~~~~dg~~l~v~~~~~~~l-~~~~~~~ 299 (314)
T 1pjx_A 249 IEVFGPDGGQPKMRIRC---PFEKPSNLHFKPQTKTIFVTEHENNAV-WKFEWQR 299 (314)
T ss_dssp EEEECTTCBSCSEEEEC---SSSCEEEEEECTTSSEEEEEETTTTEE-EEEECSS
T ss_pred EEEEcCCCCcEeEEEeC---CCCCceeEEECCCCCEEEEEeCCCCeE-EEEeCCC
Confidence 99999987776655542 335688899999998344455556778 8888764
No 194
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.33 E-value=3.5e-10 Score=119.50 Aligned_cols=195 Identities=13% Similarity=0.126 Sum_probs=146.0
Q ss_pred CCCEEEEEEcCCcEEEEEcCCCCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEc
Q 003822 510 YPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFA 589 (793)
Q Consensus 510 ~g~~Lasgs~DgtV~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~ 589 (793)
.+++|++++.|+.|.+||.++++....... .....+.++.+.|+++.++ +.++.|..||. +|+.+..+.
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~--------~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~ 72 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPL--------EKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIA 72 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEEC--------CTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCC--------CccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEc
Confidence 457899999999999999988776332211 1113577888888877666 45788999999 899999998
Q ss_pred ccCCCCeEEEEEcCCCCcEEEEEeC-CCeEEEEECCCCCccceEEccCC-----CCeEEEEEecCCCEEEEEeCCCeEEE
Q 003822 590 DMHKEHINVVKFSNHSPSIFATSSF-DQDVKLWDLRQKPIQPCYTASSS-----KGNVMVCFSPDDHYLLVSAVDNEVRQ 663 (793)
Q Consensus 590 ~gh~~~V~sv~fspdg~~~LaTgs~-Dg~IrIWDlrt~~~~~~~~l~~~-----~~~vsv~fSpdg~~Lasgs~Dg~I~I 663 (793)
.+....+.++.+.|+| +++++.+. ++.|..+|. +++....+.+... .....+++.++|+++++...++.|..
T Consensus 73 ~~~~~~~~~~~~~~dG-~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~ 150 (276)
T 3no2_A 73 APAGCEMQTARILPDG-NALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVRE 150 (276)
T ss_dssp CCTTCEEEEEEECTTS-CEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEE
T ss_pred CCCCccccccEECCCC-CEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEE
Confidence 4334578899999999 78888777 777888886 4443333332211 12223678999999999999999999
Q ss_pred EEcCCCcEEEEEeeecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEEeeeecC
Q 003822 664 LLAVDGRVHLNFGITATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRLRDISLEG 726 (793)
Q Consensus 664 wDl~tg~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~g 726 (793)
||.. |+.+.++.. ...+......++|. ++++++.+++| ..+|..+|+.+. ++..
T Consensus 151 ~d~~-G~~~w~~~~----~~~~~~~~~~~~g~-~~v~~~~~~~v-~~~d~~tG~~~w--~~~~ 204 (276)
T 3no2_A 151 IAPN-GQLLNSVKL----SGTPFSSAFLDNGD-CLVACGDAHCF-VQLNLESNRIVR--RVNA 204 (276)
T ss_dssp ECTT-SCEEEEEEC----SSCCCEEEECTTSC-EEEECBTTSEE-EEECTTTCCEEE--EEEG
T ss_pred ECCC-CCEEEEEEC----CCCccceeEcCCCC-EEEEeCCCCeE-EEEeCcCCcEEE--EecC
Confidence 9987 999888863 23455677788888 88888888888 999999999999 5543
No 195
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.32 E-value=4.6e-09 Score=109.74 Aligned_cols=241 Identities=7% Similarity=0.027 Sum_probs=165.8
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcc
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSI 535 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~ 535 (793)
+.++++.+ ++.+.++...++.|.+||.. ++... +....+...+.++++. +++++.++...++.|..||.. ++...
T Consensus 22 p~~i~~d~-~g~l~v~~~~~~~v~~~~~~-~~~~~-~~~~~~~~~~~~i~~~-~~g~l~v~~~~~~~v~~~d~~-g~~~~ 96 (300)
T 2qc5_A 22 PYGITSSE-DGKVWFTQHKANKISSLDQS-GRIKE-FEVPTPDAKVMCLIVS-SLGDIWFTENGANKIGKLSKK-GGFTE 96 (300)
T ss_dssp EEEEEECT-TSCEEEEETTTTEEEEECTT-SCEEE-EECSSTTCCEEEEEEC-TTSCEEEEETTTTEEEEECTT-SCEEE
T ss_pred cceeeECC-CCCEEEEcCCCCeEEEECCC-CceEE-EECCCCCCcceeEEEC-CCCCEEEEecCCCeEEEECCC-CCeEE
Confidence 89999999 88888887778999999988 65543 3333444678999986 677777776667889999877 43211
Q ss_pred cccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeCC
Q 003822 536 RGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFD 615 (793)
Q Consensus 536 ~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~D 615 (793)
... ......+.++++.+++..+++...++.|..||.. ++............+..+++.+++ +++++...+
T Consensus 97 ~~~--------~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g-~l~v~~~~~ 166 (300)
T 2qc5_A 97 YPL--------PQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDN-ALWFTENQN 166 (300)
T ss_dssp EEC--------SSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTS-SEEEEETTT
T ss_pred ecC--------CCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCC-CEEEEecCC
Confidence 000 0112457899998776666555557899999988 665432221245678999999998 677776667
Q ss_pred CeEEEEECCCCCccceEEccC-CCCeEEEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCC
Q 003822 616 QDVKLWDLRQKPIQPCYTASS-SKGNVMVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNG 694 (793)
Q Consensus 616 g~IrIWDlrt~~~~~~~~l~~-~~~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg 694 (793)
+.|..||. ++.... +.... ...+..++++++|+..++....+.|.+||. +++... +.. +.+...+..+++.++|
T Consensus 167 ~~i~~~~~-~g~~~~-~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~-~~~~~~~~~i~~d~~g 241 (300)
T 2qc5_A 167 NSIGRITN-TGKLEE-YPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISE-YDI-PTPNARPHAITAGKNS 241 (300)
T ss_dssp TEEEEECT-TCCEEE-EECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-EEC-SSTTCCEEEEEECSTT
T ss_pred CeEEEECC-CCcEEE-eeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEE-EEC-CCCCCCceEEEECCCC
Confidence 88999998 443332 33322 234556999999987766666778999998 565433 222 2334567889999998
Q ss_pred CeEEEEEeCCCcEEEEEEcCCCcEE
Q 003822 695 RDYIVSGSCDEHVVRICCAQTGRRL 719 (793)
Q Consensus 695 ~~~L~Sgs~Dg~II~IWDv~tg~~l 719 (793)
. +.++...++.| ..||. +++..
T Consensus 242 ~-l~v~~~~~~~i-~~~~~-~g~~~ 263 (300)
T 2qc5_A 242 E-IWFTEWGANQI-GRITN-DNTIQ 263 (300)
T ss_dssp C-EEEEETTTTEE-EEECT-TSCEE
T ss_pred C-EEEeccCCCeE-EEECC-CCcEE
Confidence 7 65665566788 99988 55443
No 196
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.32 E-value=3.3e-11 Score=143.81 Aligned_cols=243 Identities=8% Similarity=-0.014 Sum_probs=161.0
Q ss_pred cceEEEEEeCCCCCEEE-----EEeCCCeEEEEECCCCeEEEEEeccCCCCCE--EEEEEeeCCCCEEEEEEcCCc----
Q 003822 454 FRPRQFEYHPSISCLMV-----FGTLDGEIVVVNHENENIVSYIPSFGAMNSV--LGLCWLKKYPSKLIAGSDNGS---- 522 (793)
Q Consensus 454 ~~V~~vafsP~d~~~La-----sgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V--~sv~fs~~~g~~Lasgs~Dgt---- 522 (793)
..+..++||| |+++|| .|+.+.+|++||+.+++.+. . .+...+ ..++|+ ++|+.|+.++.|..
T Consensus 121 ~~~~~~~~SP-DG~~la~~~~~~G~~~~~i~v~dl~tg~~~~--~--~~~~~~~~~~~~ws-pDg~~l~~~~~d~~~~~~ 194 (695)
T 2bkl_A 121 VSLGTWAVSW-DGKKVAFAQKPNAADEAVLHVIDVDSGEWSK--V--DVIEGGKYATPKWT-PDSKGFYYEWLPTDPSIK 194 (695)
T ss_dssp EEEEEEEECT-TSSEEEEEEEETTCSCCEEEEEETTTCCBCS--S--CCBSCCTTCCCEEC-TTSSEEEEEECCCCTTSC
T ss_pred EEEEEEEECC-CCCEEEEEECCCCCceEEEEEEECCCCCCcC--C--cccCcccccceEEe-cCCCEEEEEEecCCCCCc
Confidence 3488999999 999998 34445789999999988641 1 121222 678998 79999999998876
Q ss_pred ---------EEEEEcCCCCCcccccccCCceeEec---CCCCeEEEEEccCCCEEEEEECCC----cEEEEECCCCcEEE
Q 003822 523 ---------LKLYDIRHMPPSIRGMHYGAGTVTFD---EFDQLTSVHVNSMDELFLASGYSK----NIALYDINSGRRLQ 586 (793)
Q Consensus 523 ---------V~vWDl~~~~~~~~~~~~~~~~~~~~---~~~~V~sv~~s~~~~~lla~g~Dg----~I~IWDl~tg~~l~ 586 (793)
|++|++.++.... ...+. +...+.++.|+|++..++.++.++ .|++||..+++..
T Consensus 195 ~~~~~~~~~v~~~~l~t~~~~~--------~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~- 265 (695)
T 2bkl_A 195 VDERPGYTTIRYHTLGTEPSKD--------TVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFR- 265 (695)
T ss_dssp GGGGGGGCEEEEEETTSCGGGC--------EEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCE-
T ss_pred cccCCCCCEEEEEECCCCchhc--------eEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceE-
Confidence 9999998865311 11111 224678999999999888887655 6777776655543
Q ss_pred EEcccCCCCeEEEEEcCCCCcEEEEEe---CCCeEEEEECCCCCccc-eEEccCC-CCeE-EEEEecCCCEEEEEeCCCe
Q 003822 587 VFADMHKEHINVVKFSNHSPSIFATSS---FDQDVKLWDLRQKPIQP-CYTASSS-KGNV-MVCFSPDDHYLLVSAVDNE 660 (793)
Q Consensus 587 ~~~~gh~~~V~sv~fspdg~~~LaTgs---~Dg~IrIWDlrt~~~~~-~~~l~~~-~~~v-sv~fSpdg~~Lasgs~Dg~ 660 (793)
.+. .+...+....+ ++| .+++++. .++.|.+||+.++.... ...+..+ ...+ .++|+ ++..+++...|+.
T Consensus 266 ~l~-~~~~~~~~~~~-~~g-~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~ 341 (695)
T 2bkl_A 266 LLV-KGVGAKYEVHA-WKD-RFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDAT 341 (695)
T ss_dssp EEE-ECSSCCEEEEE-ETT-EEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTE
T ss_pred Eee-cCCCceEEEEe-cCC-cEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCE
Confidence 344 25556666666 677 4555554 25789999998764311 1122222 3333 47887 6778888888998
Q ss_pred EEEEEcC-CCcEEEEEeeecCCCCCcEEEEEeeCCCeEEEEEeC---CCcEEEEEEcCCCcE
Q 003822 661 VRQLLAV-DGRVHLNFGITATGSSQNYTRSYYLNGRDYIVSGSC---DEHVVRICCAQTGRR 718 (793)
Q Consensus 661 I~IwDl~-tg~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~---Dg~II~IWDv~tg~~ 718 (793)
.++|... +|+....+.. .+...+..++++|++..++++.+. .+++ ++||+.+++.
T Consensus 342 ~~l~~~~~~g~~~~~l~~--~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v-~~~d~~~g~~ 400 (695)
T 2bkl_A 342 SEVRVATLKGKPVRTVQL--PGVGAASNLMGLEDLDDAYYVFTSFTTPRQI-YKTSVSTGKS 400 (695)
T ss_dssp EEEEEEETTCCEEEECCC--SSSSEECCCBSCTTCSEEEEEEEETTEEEEE-EEEETTTCCE
T ss_pred EEEEEEeCCCCeeEEecC--CCCeEEEEeecCCCCCEEEEEEcCCCCCCEE-EEEECCCCcE
Confidence 8887654 4655554432 223345566788888745555443 3577 9999999874
No 197
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.29 E-value=9.2e-09 Score=113.51 Aligned_cols=280 Identities=9% Similarity=-0.009 Sum_probs=180.4
Q ss_pred CCCEEEEEeC--CC---eEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEE----------cCCcEEEEEcC
Q 003822 465 ISCLMVFGTL--DG---EIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGS----------DNGSLKLYDIR 529 (793)
Q Consensus 465 d~~~Lasgs~--DG---~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs----------~DgtV~vWDl~ 529 (793)
+++++.+... .+ +|.+||..+++.+..++. + ..+ .++++ +++++++++. .++.|.+||..
T Consensus 31 ~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~-g-~~p--~i~~s-pDg~~lyv~n~~~~~~~rg~~~~~v~viD~~ 105 (373)
T 2mad_H 31 DGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNG-G-FLP--NPVAA-HSGSEFALASTSFSRIAKGKRTDYVEVFDPV 105 (373)
T ss_pred CCCEEEEeCCcccCCccEEEEEECCCCeEEEEecC-C-CCC--CeEEC-CCCCEEEEEeccccccccCCCCCeEEEEECC
Confidence 5566655543 22 889999999998888764 2 233 88887 7999888876 36789999998
Q ss_pred CCCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEEC--CCcEEEEECCCCcEEEE-EcccCCCCeEEEEEcCCCC
Q 003822 530 HMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY--SKNIALYDINSGRRLQV-FADMHKEHINVVKFSNHSP 606 (793)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~--Dg~I~IWDl~tg~~l~~-~~~gh~~~V~sv~fspdg~ 606 (793)
+.+.......... ..+........+.++|++++++++.. ++.|.++| .+++.+.. +. ..+ ++.+.|+++
T Consensus 106 t~~~~~~i~~~~~--~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~--~~~---~~~~~~~~~ 177 (373)
T 2mad_H 106 TFLPIADIELPDA--PRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLS--SPT---CYHIHPGAP 177 (373)
T ss_pred CCcEEEEEECCCc--cccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcC--CCc---eEEEEeCCC
Confidence 7554211111000 00111123468899999999998874 58899999 99998888 65 222 255667776
Q ss_pred cEEEEEeCCCeEEEEECCCCCccceEE----ccCCCCe-EEEEEecCCCEEEEEeCCCeEEEEEcCCCc--EEEEEeeec
Q 003822 607 SIFATSSFDQDVKLWDLRQKPIQPCYT----ASSSKGN-VMVCFSPDDHYLLVSAVDNEVRQLLAVDGR--VHLNFGITA 679 (793)
Q Consensus 607 ~~LaTgs~Dg~IrIWDlrt~~~~~~~~----l~~~~~~-vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~--~~~~l~~~~ 679 (793)
..+++.+.||.+.+||. +++...... ..+.... ....+.+++..++..+..+.+.+.|+.++. .+..+....
T Consensus 178 ~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~ 256 (373)
T 2mad_H 178 STFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALS 256 (373)
T ss_pred ceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecC
Confidence 77888889999999999 764331111 0111121 135677777666655678899999987653 223332111
Q ss_pred C-------CCCCcEEEEEeeCCCeEEEEEe---------CCCcEEEEEEcCCCcEEEeeeecCCCCCccceeeeccCCcc
Q 003822 680 T-------GSSQNYTRSYYLNGRDYIVSGS---------CDEHVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPF 743 (793)
Q Consensus 680 ~-------~~~~v~s~afspdg~~~L~Sgs---------~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~ 743 (793)
. .......++++++++..+++.. ..+.| .++|..+++.+. ++....
T Consensus 257 ~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V-~VID~~t~~vv~--~i~~g~--------------- 318 (373)
T 2mad_H 257 GGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEV-TSVTGLVGQTSS--QISLGH--------------- 318 (373)
T ss_pred CcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeE-EEEECCCCEEEE--EEECCC---------------
Confidence 0 0112334678899884444332 13467 999999999998 443211
Q ss_pred ccCCccEEEEEEcCCCCceeeEeeEEEe-CCCcEEEEcCCCCC
Q 003822 744 RDFNMSILAAYTRPSSKSEIVKVNLLAS-TDHCDKECSHGQHS 785 (793)
Q Consensus 744 ~~h~~~V~sva~~P~~~~~iv~~~ltaS-~Dg~VkvW~~~~~~ 785 (793)
...+++|+|+++..++ ++. .+++|.+|+.....
T Consensus 319 -----~p~~i~~s~Dg~~~l~----v~~~~~~~V~ViD~~t~~ 352 (373)
T 2mad_H 319 -----DVDAISVAQDGGPDLY----ALSAGTEVLHIYDAGAGD 352 (373)
T ss_pred -----CcCeEEECCCCCeEEE----EEcCCCCeEEEEECCCCC
Confidence 3568999998654555 565 58999999987654
No 198
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.26 E-value=6.4e-10 Score=133.68 Aligned_cols=278 Identities=9% Similarity=0.021 Sum_probs=163.8
Q ss_pred CCCCCEEEEEeCCCe---EEEE--ECC---CCeEEEEEe----ccCCCCCEEEEEEeeCCCCEEEEEEcC-----CcEEE
Q 003822 463 PSISCLMVFGTLDGE---IVVV--NHE---NENIVSYIP----SFGAMNSVLGLCWLKKYPSKLIAGSDN-----GSLKL 525 (793)
Q Consensus 463 P~d~~~Lasgs~DG~---I~VW--d~~---t~~~i~~l~----~~~h~~~V~sv~fs~~~g~~Lasgs~D-----gtV~v 525 (793)
| +|++++....++. -.+| +.. .++....+. ..+|...+..++|+ ++|++|+.++.+ .+|++
T Consensus 116 p-dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~S-PDG~~la~~~~~~G~e~~~i~v 193 (741)
T 1yr2_A 116 R-RGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAAS-DDGRLLAYSVQDGGSDWRTVKF 193 (741)
T ss_dssp E-ETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEEC-TTSSEEEEEEEETTCSEEEEEE
T ss_pred E-ECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEEC-CCCCEEEEEEcCCCCceEEEEE
Confidence 5 6666665554332 4444 443 343332221 11344468889998 899988877654 35999
Q ss_pred EEcCCCCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCc--------------EEEEECCCCcE--EEEEc
Q 003822 526 YDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKN--------------IALYDINSGRR--LQVFA 589 (793)
Q Consensus 526 WDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~--------------I~IWDl~tg~~--l~~~~ 589 (793)
||+.+++..... .. ...+..++|+|+ ..++.++.++. |++|++.++.. ...+.
T Consensus 194 ~dl~tg~~~~~~-------~~---~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~ 262 (741)
T 1yr2_A 194 VGVADGKPLADE-------LK---WVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFA 262 (741)
T ss_dssp EETTTCCEEEEE-------EE---EEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEEC
T ss_pred EECCCCCCCCcc-------CC---CceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEec
Confidence 999987652110 00 011356789898 88888876543 99999987762 22333
Q ss_pred c-cCCCCeEEEEEcCCCCcEEEEEeCCC-----eEEEEECCCC--C-ccceEEccCCCCeEEEEEecCCCEEEEEeCC--
Q 003822 590 D-MHKEHINVVKFSNHSPSIFATSSFDQ-----DVKLWDLRQK--P-IQPCYTASSSKGNVMVCFSPDDHYLLVSAVD-- 658 (793)
Q Consensus 590 ~-gh~~~V~sv~fspdg~~~LaTgs~Dg-----~IrIWDlrt~--~-~~~~~~l~~~~~~vsv~fSpdg~~Lasgs~D-- 658 (793)
. .+...+..+.|+|+| ++++..+.++ .|++||+.++ . ...+. ......... ++|+|+.|+..+.+
T Consensus 263 ~~~~~~~~~~~~~SpDG-~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~--~~~~~~~~~-~~~dg~~l~~~s~~~~ 338 (741)
T 1yr2_A 263 TPELPKRGHGASVSSDG-RWVVITSSEGTDPVNTVHVARVTNGKIGPVTALI--PDLKAQWDF-VDGVGDQLWFVSGDGA 338 (741)
T ss_dssp CTTCTTCEEEEEECTTS-CEEEEEEECTTCSCCEEEEEEEETTEECCCEEEE--CSSSSCEEE-EEEETTEEEEEECTTC
T ss_pred cCCCCeEEEEEEECCCC-CEEEEEEEccCCCcceEEEEECCCCCCcccEEec--CCCCceEEE-EeccCCEEEEEECCCC
Confidence 1 244468899999999 6666666443 7999999876 3 22222 222233333 45999999888753
Q ss_pred --CeEEEEEcCCCc-EEEEEeeecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcC-CCcEEEeeeecCCCCCccce
Q 003822 659 --NEVRQLLAVDGR-VHLNFGITATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQ-TGRRLRDISLEGKGSGTSMF 734 (793)
Q Consensus 659 --g~I~IwDl~tg~-~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~-tg~~l~~~~L~gh~~~~s~~ 734 (793)
+.|.+||+.++. ....+. +.....+..++++ +..++++...|+.. +||.+. +|+.+. .+..+.
T Consensus 339 ~~~~l~~~d~~~~~~~~~~l~--~~~~~~l~~~~~~--~~~lv~~~~~dg~~-~l~~~~~~g~~~~--~l~~~~------ 405 (741)
T 1yr2_A 339 PLKKIVRVDLSGSTPRFDTVV--PESKDNLESVGIA--GNRLFASYIHDAKS-QVLAFDLDGKPAG--AVSLPG------ 405 (741)
T ss_dssp TTCEEEEEECSSSSCEEEEEE--CCCSSEEEEEEEE--BTEEEEEEEETTEE-EEEEEETTSCEEE--ECBCSS------
T ss_pred CCCEEEEEeCCCCccccEEEe--cCCCCeEEEEEEE--CCEEEEEEEECCEE-EEEEEeCCCCcee--eccCCC------
Confidence 459999998752 323332 2222333345555 44488889999987 777654 455555 332211
Q ss_pred eeeccCCccccCCccEEEEEEcCCCCceeeEeeEEEeCCCcEEEEcCCC
Q 003822 735 VQSLRGDPFRDFNMSILAAYTRPSSKSEIVKVNLLASTDHCDKECSHGQ 783 (793)
Q Consensus 735 v~sl~g~~~~~h~~~V~sva~~P~~~~~iv~~~ltaS~Dg~VkvW~~~~ 783 (793)
.+.|..+.++|++...++ ..-..+..++|.+|+...
T Consensus 406 ------------~~~v~~~~~s~d~~~l~~-~~ss~~~P~~i~~~d~~t 441 (741)
T 1yr2_A 406 ------------IGSASGLSGRPGDRHAYL-SFSSFTQPATVLALDPAT 441 (741)
T ss_dssp ------------SCEEEEEECCBTCSCEEE-EEEETTEEEEEEEEETTT
T ss_pred ------------CeEEEEeecCCCCCEEEE-EEcCCCCCCEEEEEECCC
Confidence 235777788886533333 111112347778887643
No 199
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.25 E-value=9e-09 Score=107.42 Aligned_cols=238 Identities=6% Similarity=-0.041 Sum_probs=159.5
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcc
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSI 535 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~ 535 (793)
+..++++| ++.++++...++.|..|+.. ++. ..+........+.++++. +++.++++...++.|..||. ++....
T Consensus 59 ~~~i~~~~-~g~l~v~~~~~~~i~~~~~~-g~~-~~~~~~~~~~~~~~i~~~-~~g~l~v~~~~~~~i~~~d~-~g~~~~ 133 (299)
T 2z2n_A 59 VMCLTISS-DGEVWFTENAANKIGRITKK-GII-KEYTLPNPDSAPYGITEG-PNGDIWFTEMNGNRIGRITD-DGKIRE 133 (299)
T ss_dssp EEEEEECT-TSCEEEEETTTTEEEEECTT-SCE-EEEECSSTTCCEEEEEEC-TTSCEEEEETTTTEEEEECT-TCCEEE
T ss_pred eeeEEECC-CCCEEEeCCCCCeEEEECCC-CcE-EEEeCCCcCCCceeeEEC-CCCCEEEEecCCceEEEECC-CCCEEE
Confidence 88999999 88888887778899999986 443 333332345678999986 67877777777889999998 433211
Q ss_pred cccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeCC
Q 003822 536 RGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFD 615 (793)
Q Consensus 536 ~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~D 615 (793)
... ......+.++++.+++..+++...++.|..||. +++........+...+..+++.+++ .++++...+
T Consensus 134 ~~~--------~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~ 203 (299)
T 2z2n_A 134 YEL--------PNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDD-ALWFVEIIG 203 (299)
T ss_dssp EEC--------SSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTS-SEEEEETTT
T ss_pred ecC--------CCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCC-CEEEEccCC
Confidence 100 012345789999877765555545789999999 6765543221345678899999998 777776678
Q ss_pred CeEEEEECCCCCccceEEcc-CCCCeEEEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCC
Q 003822 616 QDVKLWDLRQKPIQPCYTAS-SSKGNVMVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNG 694 (793)
Q Consensus 616 g~IrIWDlrt~~~~~~~~l~-~~~~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg 694 (793)
+.|.+||. ++... .+... ....+..++++++|+..++...++.|..||. +++. ..+.. ..+...+..+++ ++|
T Consensus 204 ~~i~~~~~-~g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~-~~~~~-~~~~~~~~~i~~-~~g 277 (299)
T 2z2n_A 204 NKIGRITT-SGEIT-EFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNII-EEYPI-QIKSAEPHGICF-DGE 277 (299)
T ss_dssp TEEEEECT-TCCEE-EEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTEE-EEEEC-SSSSCCEEEEEE-CSS
T ss_pred ceEEEECC-CCcEE-EEECCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCce-EEEeC-CCCCCccceEEe-cCC
Confidence 89999999 55432 23333 2345567999999996666556789999998 5543 34432 233456778888 888
Q ss_pred CeEEEEEeCCCcEEEEEEcCCCc
Q 003822 695 RDYIVSGSCDEHVVRICCAQTGR 717 (793)
Q Consensus 695 ~~~L~Sgs~Dg~II~IWDv~tg~ 717 (793)
. +.++.+ .+.+ ..++..+++
T Consensus 278 ~-l~v~~~-~~~l-~~~~~~~~~ 297 (299)
T 2z2n_A 278 T-IWFAME-CDKI-GKLTLIKDN 297 (299)
T ss_dssp C-EEEEET-TTEE-EEEEEC---
T ss_pred C-EEEEec-CCcE-EEEEcCccc
Confidence 7 444444 5666 677776653
No 200
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.25 E-value=3.7e-09 Score=118.13 Aligned_cols=243 Identities=9% Similarity=0.074 Sum_probs=163.8
Q ss_pred ceEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCC--cEEEEEcCCCC
Q 003822 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNG--SLKLYDIRHMP 532 (793)
Q Consensus 455 ~V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~Dg--tV~vWDl~~~~ 532 (793)
.+..|+|+| +++++++...++.|++||..++........ . .... ++|. ++++.|+++..++ .|.+|+...+.
T Consensus 132 ~P~~la~d~-~g~lyv~d~~~~~I~~id~~~g~~~~~~~~--~-~~~~-ia~~-~~g~~l~~~d~~~~~~I~~~d~~~~~ 205 (409)
T 3hrp_A 132 YMWGIAAVG-NNTVLAYQRDDPRVRLISVDDNKVTTVHPG--F-KGGK-PAVT-KDKQRVYSIGWEGTHTVYVYMKASGW 205 (409)
T ss_dssp CEEEEEECS-TTEEEEEETTTTEEEEEETTTTEEEEEEET--C-CBCB-CEEC-TTSSEEEEEBSSTTCEEEEEEGGGTT
T ss_pred CceEEEEeC-CCCEEEEecCCCcEEEEECCCCEEEEeecc--C-CCCc-eeEe-cCCCcEEEEecCCCceEEEEEcCCCc
Confidence 489999999 888888888889999999998877655542 2 2233 8886 7888888888766 78888876543
Q ss_pred CcccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEE---cccCCCCe-E-EEEEcCCCCc
Q 003822 533 PSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVF---ADMHKEHI-N-VVKFSNHSPS 607 (793)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~---~~gh~~~V-~-sv~fspdg~~ 607 (793)
.. .... .........+.+++++|.++.++++..++.|+.||..++.....- ..++...- . .++|+|+++.
T Consensus 206 ~~-~~~g----~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~ 280 (409)
T 3hrp_A 206 AP-TRIG----QLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSN 280 (409)
T ss_dssp CE-EEEE----ECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTE
T ss_pred ee-EEee----eccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCE
Confidence 31 1100 000012345788999887788887666889999999877643220 11222222 3 9999996547
Q ss_pred EEEEEeCCCeEEEEECCCCCccceEEccC--------------CCCeEEEEEecCCCEEEEEe-CCCeEEEEEcCCCcEE
Q 003822 608 IFATSSFDQDVKLWDLRQKPIQPCYTASS--------------SKGNVMVCFSPDDHYLLVSA-VDNEVRQLLAVDGRVH 672 (793)
Q Consensus 608 ~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~--------------~~~~vsv~fSpdg~~Lasgs-~Dg~I~IwDl~tg~~~ 672 (793)
++++...++.|+.||.... .....-.. -..+..++++|+|+..++-+ .++.|+.|++.+|..
T Consensus 281 lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v- 357 (409)
T 3hrp_A 281 FYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYV- 357 (409)
T ss_dssp EEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEE-
T ss_pred EEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEE-
Confidence 8888778899999998653 11111111 12355699999999777777 789999999888875
Q ss_pred EEEeeecC------------CCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEc
Q 003822 673 LNFGITAT------------GSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCA 713 (793)
Q Consensus 673 ~~l~~~~~------------~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv 713 (793)
.++..... .-.....+++.++|. ++++-..+++| +.+++
T Consensus 358 ~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~-lyVad~~n~~I-r~i~~ 408 (409)
T 3hrp_A 358 STVAGQVDVASQIDGTPLEATFNYPYDICYDGEGG-YWIAEAWGKAI-RKYAV 408 (409)
T ss_dssp EEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSE-EEEEESTTCEE-EEEEE
T ss_pred EEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCC-EEEEECCCCeE-EEEEe
Confidence 34433210 013577889999976 66777777777 76654
No 201
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.25 E-value=9.5e-09 Score=113.42 Aligned_cols=241 Identities=11% Similarity=-0.015 Sum_probs=162.1
Q ss_pred EEEEeCCCCCEEEEEe----------CCCeEEEEECCCCeEEEEEeccCC-----CCCEEEEEEeeCCCCEEEEEEc--C
Q 003822 458 QFEYHPSISCLMVFGT----------LDGEIVVVNHENENIVSYIPSFGA-----MNSVLGLCWLKKYPSKLIAGSD--N 520 (793)
Q Consensus 458 ~vafsP~d~~~Lasgs----------~DG~I~VWd~~t~~~i~~l~~~~h-----~~~V~sv~fs~~~g~~Lasgs~--D 520 (793)
.++++| +++.++++. .++.|.+||..+.+.+..+...+. ......+.|+ ++|++|++++. +
T Consensus 70 ~i~~sp-Dg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~s-pDG~~l~v~n~~~~ 147 (373)
T 2mad_H 70 NPVAAH-SGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANT-PNNADLLFFQFAAG 147 (373)
T ss_pred CeEECC-CCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEEC-CCCCEEEEEecCCC
Confidence 789999 888888875 367899999999988887765310 1234578887 79999988874 5
Q ss_pred CcEEEEEcCCCCCcccccccCCceeEecCCCCeEEEEEccCCC-EEEEEECCCcEEEEECCCCcEEEEEcc----cCCCC
Q 003822 521 GSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDE-LFLASGYSKNIALYDINSGRRLQVFAD----MHKEH 595 (793)
Q Consensus 521 gtV~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~-~lla~g~Dg~I~IWDl~tg~~l~~~~~----gh~~~ 595 (793)
++|.++| .+++....... .. .++.+.+.++ .+++.+.||.+.++|. +++.+..... ....+
T Consensus 148 ~~v~viD-~t~~~~~~~i~---------~~---~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p 213 (373)
T 2mad_H 148 PAVGLVV-QGGSSDDQLLS---------SP---TCYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQN 213 (373)
T ss_pred CeEEEEE-CCCCEEeEEcC---------CC---ceEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcc
Confidence 7899999 87654211011 11 1233435543 4555567999999999 8877643220 01122
Q ss_pred e-EEEEEcCCCCcEEEEEeCCCeEEEEECCCCCccceEEccC-----------CCCeEEEEEecCCCEEEEEeC------
Q 003822 596 I-NVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASS-----------SKGNVMVCFSPDDHYLLVSAV------ 657 (793)
Q Consensus 596 V-~sv~fspdg~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~-----------~~~~vsv~fSpdg~~Lasgs~------ 657 (793)
+ ....+.++++.++++. ..+.+.+.|+.+........+.. ..+...+.++|+++.++++..
T Consensus 214 ~~~~~~~~~~~~~~~~~~-~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~ 292 (373)
T 2mad_H 214 LLTQPAQANKSGRIVWPV-YSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWK 292 (373)
T ss_pred eeecceeEecCCEEEEEc-CCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCccc
Confidence 2 2345666664444444 67899999997653221111110 112223789999998888753
Q ss_pred ----CCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCCCeEEEEEe-CCCcEEEEEEcCCCcEEE
Q 003822 658 ----DNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNGRDYIVSGS-CDEHVVRICCAQTGRRLR 720 (793)
Q Consensus 658 ----Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs-~Dg~II~IWDv~tg~~l~ 720 (793)
.+.|.++|+.+++.+.++.. ......++|+|||+.+++++. .++.| .+||+.+++.++
T Consensus 293 ~~~~~~~V~VID~~t~~vv~~i~~----g~~p~~i~~s~Dg~~~l~v~~~~~~~V-~ViD~~t~~vv~ 355 (373)
T 2mad_H 293 LHAAAKEVTSVTGLVGQTSSQISL----GHDVDAISVAQDGGPDLYALSAGTEVL-HIYDAGAGDQDQ 355 (373)
T ss_pred ccCCCCeEEEEECCCCEEEEEEEC----CCCcCeEEECCCCCeEEEEEcCCCCeE-EEEECCCCCEEe
Confidence 35899999999999888852 335789999999985566665 58888 999999999998
No 202
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.21 E-value=7.7e-09 Score=109.71 Aligned_cols=232 Identities=10% Similarity=0.100 Sum_probs=152.5
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcc
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSI 535 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~ 535 (793)
.-+..|+|.++.++++...++.|..||..+++.. .+. ....+.++++. ++++++++ . ++.|.+||.++++...
T Consensus 15 ~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~---~~~~~~~i~~~-~dG~l~v~-~-~~~l~~~d~~~g~~~~ 87 (297)
T 3g4e_A 15 GESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RVT---MDAPVSSVALR-QSGGYVAT-I-GTKFCALNWKEQSAVV 87 (297)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EEE---CSSCEEEEEEB-TTSSEEEE-E-TTEEEEEETTTTEEEE
T ss_pred ccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EEe---CCCceEEEEEC-CCCCEEEE-E-CCeEEEEECCCCcEEE
Confidence 5678999966777778888999999999887653 332 34679999997 78885544 4 5689999998754311
Q ss_pred cccccCCceeEecCCCCeEEEEEccCCCEEEEEECC---------CcEEEEECCC-CcEEEEEcccCCCCeEEEEEcCCC
Q 003822 536 RGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYS---------KNIALYDINS-GRRLQVFADMHKEHINVVKFSNHS 605 (793)
Q Consensus 536 ~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~D---------g~I~IWDl~t-g~~l~~~~~gh~~~V~sv~fspdg 605 (793)
....... .....+..+++.+++..+++.... ....+|.+.. ++...... +....+.++|+|++
T Consensus 88 ~~~~~~~-----~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~--~~~~pngi~~spdg 160 (297)
T 3g4e_A 88 LATVDND-----KKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFD--QVDISNGLDWSLDH 160 (297)
T ss_dssp EEECCTT-----CSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEE--EESBEEEEEECTTS
T ss_pred EEecCCC-----CCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEee--ccccccceEEcCCC
Confidence 1000000 011347889998887755544321 2345555543 44333222 44567899999999
Q ss_pred CcEEEEEeCCCeEEEEECC--CCCcc---ceEEccCC-CCeEEEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeec
Q 003822 606 PSIFATSSFDQDVKLWDLR--QKPIQ---PCYTASSS-KGNVMVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITA 679 (793)
Q Consensus 606 ~~~LaTgs~Dg~IrIWDlr--t~~~~---~~~~l~~~-~~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~ 679 (793)
..++++.+.++.|.+||+. ++... ....+... ..+-.++++++|++.++....+.|.+||..+|+.+..+..
T Consensus 161 ~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~-- 238 (297)
T 3g4e_A 161 KIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKL-- 238 (297)
T ss_dssp CEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEEC--
T ss_pred CEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEEC--
Confidence 4455667778999999973 44321 12222221 2344599999998777777788999999999998887753
Q ss_pred CCCCCcEEEEEe-eCCCeEEEEEeCC
Q 003822 680 TGSSQNYTRSYY-LNGRDYIVSGSCD 704 (793)
Q Consensus 680 ~~~~~v~s~afs-pdg~~~L~Sgs~D 704 (793)
....+.+++|. |+++.++++...+
T Consensus 239 -p~~~~t~~~f~g~d~~~L~vt~~~~ 263 (297)
T 3g4e_A 239 -PVDKTTSCCFGGKNYSEMYVTCARD 263 (297)
T ss_dssp -SSSBEEEEEEESGGGCEEEEEEBCT
T ss_pred -CCCCceEEEEeCCCCCEEEEEcCCc
Confidence 33568899998 7877455555444
No 203
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.20 E-value=1.6e-09 Score=111.95 Aligned_cols=240 Identities=10% Similarity=0.021 Sum_probs=158.6
Q ss_pred CEEEEEEeeCCCCEEE-EEEcCCcEEEEEcCCCCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEE
Q 003822 500 SVLGLCWLKKYPSKLI-AGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYD 578 (793)
Q Consensus 500 ~V~sv~fs~~~g~~La-sgs~DgtV~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWD 578 (793)
...++++. +++++++ +...++.|.+||..+...... .......+.++++.+++..+++ ..++.|.+||
T Consensus 25 ~p~~i~~~-~~g~l~v~~~~~~~~i~~~~~~~~~~~~~---------~~~~~~~p~~i~~~~~g~l~v~-~~~~~i~~~d 93 (270)
T 1rwi_B 25 SPSGVAVD-SAGNVYVTSEGMYGRVVKLATGSTGTTVL---------PFNGLYQPQGLAVDGAGTVYVT-DFNNRVVTLA 93 (270)
T ss_dssp CEEEEEEC-TTCCEEEEECSSSCEEEEECC-----EEC---------CCCSCCSCCCEEECTTCCEEEE-ETTTEEEEEC
T ss_pred CccceEEC-CCCCEEEEccCCCCcEEEecCCCcccceE---------eeCCcCCcceeEECCCCCEEEE-cCCCEEEEEe
Confidence 67888886 6788666 446788999998765432111 0112245778899887774444 4488999999
Q ss_pred CCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEECCCCCccceEEc-cCCCCeEEEEEecCCCEEEEEeC
Q 003822 579 INSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTA-SSSKGNVMVCFSPDDHYLLVSAV 657 (793)
Q Consensus 579 l~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l-~~~~~~vsv~fSpdg~~Lasgs~ 657 (793)
...... ..+.......+..++++|+| +++++...++.|.+||..+... .... .+...+..++++|+|+.+++...
T Consensus 94 ~~~~~~-~~~~~~~~~~p~~i~~~~~g-~l~v~~~~~~~i~~~~~~~~~~--~~~~~~~~~~p~~i~~~~~g~l~v~~~~ 169 (270)
T 1rwi_B 94 AGSNNQ-TVLPFDGLNYPEGLAVDTQG-AVYVADRGNNRVVKLAAGSKTQ--TVLPFTGLNDPDGVAVDNSGNVYVTDTD 169 (270)
T ss_dssp TTCSCC-EECCCCSCSSEEEEEECTTC-CEEEEEGGGTEEEEECTTCCSC--EECCCCSCCSCCCEEECTTCCEEEEEGG
T ss_pred CCCceE-eeeecCCcCCCcceEECCCC-CEEEEECCCCEEEEEECCCcee--EeeccccCCCceeEEEeCCCCEEEEECC
Confidence 876543 33332233678999999998 7888777788999998655422 2211 12224446999999997766667
Q ss_pred CCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCCCCccceeee
Q 003822 658 DNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKGSGTSMFVQS 737 (793)
Q Consensus 658 Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~s 737 (793)
++.|.+||...+...... ..+...+..+++.++|. ++++...++.| .+|+..+..... ...
T Consensus 170 ~~~i~~~~~~~~~~~~~~---~~~~~~p~~i~~d~~g~-l~v~~~~~~~v-~~~~~~~~~~~~--~~~------------ 230 (270)
T 1rwi_B 170 NNRVVKLEAESNNQVVLP---FTDITAPWGIAVDEAGT-VYVTEHNTNQV-VKLLAGSTTSTV--LPF------------ 230 (270)
T ss_dssp GTEEEEECTTTCCEEECC---CSSCCSEEEEEECTTCC-EEEEETTTSCE-EEECTTCSCCEE--CCC------------
T ss_pred CCEEEEEecCCCceEeec---ccCCCCceEEEECCCCC-EEEEECCCCcE-EEEcCCCCccee--ecc------------
Confidence 889999998776643221 12235678899999986 77777778888 999986544322 100
Q ss_pred ccCCccccCCccEEEEEEcCCCCceeeEeeEEEeCCCcEEEEcCCCCC
Q 003822 738 LRGDPFRDFNMSILAAYTRPSSKSEIVKVNLLASTDHCDKECSHGQHS 785 (793)
Q Consensus 738 l~g~~~~~h~~~V~sva~~P~~~~~iv~~~ltaS~Dg~VkvW~~~~~~ 785 (793)
.+-..+.+++++|++ ..++ +.+.++.|++++..++.
T Consensus 231 -------~~~~~p~~i~~~~~g-~l~v----~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 231 -------TGLNTPLAVAVDSDR-TVYV----ADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp -------CSCSCEEEEEECTTC-CEEE----EEGGGTEEEEECCCGGG
T ss_pred -------CCCCCceeEEECCCC-CEEE----EECCCCEEEEEcCCCcc
Confidence 011357899999975 3333 56779999999987664
No 204
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.20 E-value=1.7e-09 Score=130.01 Aligned_cols=243 Identities=13% Similarity=0.045 Sum_probs=157.9
Q ss_pred ceEEEEEeCCCCCEEEEEeCC-----CeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCc-------
Q 003822 455 RPRQFEYHPSISCLMVFGTLD-----GEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGS------- 522 (793)
Q Consensus 455 ~V~~vafsP~d~~~Lasgs~D-----G~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~Dgt------- 522 (793)
.+..++|+| |+++||.++.+ .+|++||+.+++.+.... +...+..++|+ ++ +.|+.++.++.
T Consensus 164 ~~~~~~~SP-DG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~---~~~~~~~~~ws-pD-~~l~~~~~~~~~~~~~~~ 237 (741)
T 1yr2_A 164 ALDAWAASD-DGRLLAYSVQDGGSDWRTVKFVGVADGKPLADEL---KWVKFSGLAWL-GN-DALLYSRFAEPKEGQAFQ 237 (741)
T ss_dssp EEEEEEECT-TSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEE---EEEESCCCEES-TT-SEEEEEECCCC-------
T ss_pred EEEeEEECC-CCCEEEEEEcCCCCceEEEEEEECCCCCCCCccC---CCceeccEEEE-CC-CEEEEEEecCcccccccc
Confidence 378899999 99999887654 469999999998765321 11123578898 67 88888877654
Q ss_pred -------EEEEEcCCCCCcccccccCCceeEecC---CCCeEEEEEccCCCEEEEEECC-----CcEEEEECCCC--cEE
Q 003822 523 -------LKLYDIRHMPPSIRGMHYGAGTVTFDE---FDQLTSVHVNSMDELFLASGYS-----KNIALYDINSG--RRL 585 (793)
Q Consensus 523 -------V~vWDl~~~~~~~~~~~~~~~~~~~~~---~~~V~sv~~s~~~~~lla~g~D-----g~I~IWDl~tg--~~l 585 (793)
|.+|++.++...- ...+.. ...+.++.|+|++..++.++.+ ..|++||+.++ +..
T Consensus 238 ~~~~~~~v~~~~lgt~~~~~--------~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~ 309 (741)
T 1yr2_A 238 ALNYNQTVWLHRLGTPQSAD--------QPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPV 309 (741)
T ss_dssp -CCCCCEEEEEETTSCGGGC--------EEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCC
T ss_pred cCCCCCEEEEEECCCCchhC--------EEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCccc
Confidence 8899987654210 112221 1247899999999888887754 38999999887 314
Q ss_pred EEEcccCCCCeEEEEEcCCCCcEEEEEeC----CCeEEEEECCCCCccceEEccCCCCeE-EEEEecCCCEEEEEeCCCe
Q 003822 586 QVFADMHKEHINVVKFSNHSPSIFATSSF----DQDVKLWDLRQKPIQPCYTASSSKGNV-MVCFSPDDHYLLVSAVDNE 660 (793)
Q Consensus 586 ~~~~~gh~~~V~sv~fspdg~~~LaTgs~----Dg~IrIWDlrt~~~~~~~~l~~~~~~v-sv~fSpdg~~Lasgs~Dg~ 660 (793)
..+. .+...+.... .|+| ..|+..+. ++.|.+||+.++.......+.++...+ .+.|+ ++..+++...|+.
T Consensus 310 ~~l~-~~~~~~~~~~-~~dg-~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~ 385 (741)
T 1yr2_A 310 TALI-PDLKAQWDFV-DGVG-DQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAK 385 (741)
T ss_dssp EEEE-CSSSSCEEEE-EEET-TEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTE
T ss_pred EEec-CCCCceEEEE-eccC-CEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCE
Confidence 4555 3555555553 4788 55555554 345999998874201112224444444 36777 5667778888888
Q ss_pred EEEEEcC-CCcEEEEEeeecCCCCCcEEEEEeeCCCeEEEEEeC---CCcEEEEEEcCCCcE
Q 003822 661 VRQLLAV-DGRVHLNFGITATGSSQNYTRSYYLNGRDYIVSGSC---DEHVVRICCAQTGRR 718 (793)
Q Consensus 661 I~IwDl~-tg~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~---Dg~II~IWDv~tg~~ 718 (793)
.++|... +|+....+.. .+...+..++++|++..++++.+. .+++ ++||+.+|+.
T Consensus 386 ~~l~~~~~~g~~~~~l~~--~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i-~~~d~~tg~~ 444 (741)
T 1yr2_A 386 SQVLAFDLDGKPAGAVSL--PGIGSASGLSGRPGDRHAYLSFSSFTQPATV-LALDPATAKT 444 (741)
T ss_dssp EEEEEEETTSCEEEECBC--SSSCEEEEEECCBTCSCEEEEEEETTEEEEE-EEEETTTTEE
T ss_pred EEEEEEeCCCCceeeccC--CCCeEEEEeecCCCCCEEEEEEcCCCCCCEE-EEEECCCCcE
Confidence 7777544 4555555432 223456778888988745555443 3678 9999998873
No 205
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.18 E-value=9.5e-09 Score=108.50 Aligned_cols=249 Identities=8% Similarity=0.050 Sum_probs=159.4
Q ss_pred CCCEEEEEEeeCCCCEEEE-------EEcCCcEEEEEcCCCCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEEC
Q 003822 498 MNSVLGLCWLKKYPSKLIA-------GSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY 570 (793)
Q Consensus 498 ~~~V~sv~fs~~~g~~Las-------gs~DgtV~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~ 570 (793)
-....+++|. +++.++++ +..++.|.+||..+++........ ...+...+.++++.++++.+++++.
T Consensus 17 ~~~~~~~~~~-~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~-----~~~~~~~~~~i~~~~~~g~l~v~~~ 90 (314)
T 1pjx_A 17 IPGAEGPVFD-KNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPE-----VNGYGGIPAGCQCDRDANQLFVADM 90 (314)
T ss_dssp CTTCEEEEEC-TTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCE-----ETTEECCEEEEEECSSSSEEEEEET
T ss_pred CCCccCceEC-CCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecc-----cCCCCCCCceEEEecCCCcEEEEEC
Confidence 3456789997 78887777 577899999998776542111000 0001245889999777466666666
Q ss_pred CCcEEEEECCCCcEEEE-Ecc---cCCCCeEEEEEcCCCCcEEEEEeCC---------------CeEEEEECCCCCccce
Q 003822 571 SKNIALYDINSGRRLQV-FAD---MHKEHINVVKFSNHSPSIFATSSFD---------------QDVKLWDLRQKPIQPC 631 (793)
Q Consensus 571 Dg~I~IWDl~tg~~l~~-~~~---gh~~~V~sv~fspdg~~~LaTgs~D---------------g~IrIWDlrt~~~~~~ 631 (793)
.+.|.+||.. ++.... ... .....+.+++++++| +++++...+ +.|..||.. ++....
T Consensus 91 ~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g-~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~ 167 (314)
T 1pjx_A 91 RLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEG-NLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQV 167 (314)
T ss_dssp TTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTS-CEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEE
T ss_pred CCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCC-CEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEe
Confidence 5689999998 765433 221 122458899999998 677766655 567777765 432222
Q ss_pred EEccCCCCeEEEEEe----cCCCEEEEEe-CCCeEEEEEcC-CCcEEE--EEeeecCCC-CCcEEEEEeeCCCeEEEEEe
Q 003822 632 YTASSSKGNVMVCFS----PDDHYLLVSA-VDNEVRQLLAV-DGRVHL--NFGITATGS-SQNYTRSYYLNGRDYIVSGS 702 (793)
Q Consensus 632 ~~l~~~~~~vsv~fS----pdg~~Lasgs-~Dg~I~IwDl~-tg~~~~--~l~~~~~~~-~~v~s~afspdg~~~L~Sgs 702 (793)
. .....+..++|+ |+|+.++++. .++.|.+||.. +++... .+.....+. ..+..+++.++|. +.++..
T Consensus 168 ~--~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-l~v~~~ 244 (314)
T 1pjx_A 168 D--TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNN-LLVANW 244 (314)
T ss_dssp E--EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCC-EEEEEE
T ss_pred c--cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCC-EEEEEc
Confidence 1 122234568999 9998776664 57899999986 454321 121111222 4567788999997 777766
Q ss_pred CCCcEEEEEEcCCCcEEEeeeecCCCCCccceeeeccCCccccCCccEEEEEEcCCCCceeeEeeEEEeCCCcEEEEcCC
Q 003822 703 CDEHVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKSEIVKVNLLASTDHCDKECSHG 782 (793)
Q Consensus 703 ~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~~~~iv~~~ltaS~Dg~VkvW~~~ 782 (793)
.++.| .+||..+++.+. .+..+ ...+.+++++|++....+ +.+.++.|..|+..
T Consensus 245 ~~~~i-~~~d~~~g~~~~--~~~~~-------------------~~~~~~i~~~~dg~~l~v----~~~~~~~l~~~~~~ 298 (314)
T 1pjx_A 245 GSSHI-EVFGPDGGQPKM--RIRCP-------------------FEKPSNLHFKPQTKTIFV----TEHENNAVWKFEWQ 298 (314)
T ss_dssp TTTEE-EEECTTCBSCSE--EEECS-------------------SSCEEEEEECTTSSEEEE----EETTTTEEEEEECS
T ss_pred CCCEE-EEEcCCCCcEeE--EEeCC-------------------CCCceeEEECCCCCEEEE----EeCCCCeEEEEeCC
Confidence 78888 999998887666 33222 135788999986532333 44556788888876
Q ss_pred CC
Q 003822 783 QH 784 (793)
Q Consensus 783 ~~ 784 (793)
..
T Consensus 299 ~~ 300 (314)
T 1pjx_A 299 RN 300 (314)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 206
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.17 E-value=9.9e-09 Score=113.51 Aligned_cols=287 Identities=10% Similarity=0.084 Sum_probs=175.4
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCe-----------EEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEE
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENEN-----------IVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLK 524 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~-----------~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~ 524 (793)
++.+++++ ...++++|+.++ +++|++.... ..... .+.. |+.++| ++++|+++ .++.|+
T Consensus 40 ~nlLais~-~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~---~lp~-V~~l~f---d~~~L~v~-~~~~l~ 109 (388)
T 1xip_A 40 LQNLDISN-SKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK---EIPD-VIFVCF---HGDQVLVS-TRNALY 109 (388)
T ss_dssp CBCEEEET-TTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE---ECTT-EEEEEE---ETTEEEEE-ESSEEE
T ss_pred ccEEEEcC-CCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEe---eCCC-eeEEEE---CCCEEEEE-cCCcEE
Confidence 78899999 888999999875 6669864322 11122 3456 999999 78899998 889999
Q ss_pred EEEcCCCCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCC
Q 003822 525 LYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNH 604 (793)
Q Consensus 525 vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspd 604 (793)
+||+.+..... ....+..++.++.+.++ .++++..||.|.+||+.++.... +...|++++|+|+
T Consensus 110 v~dv~sl~~~~---------~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~-----~~~~Vs~v~WSpk 173 (388)
T 1xip_A 110 SLDLEELSEFR---------TVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ-----LAQNVTSFDVTNS 173 (388)
T ss_dssp EEESSSTTCEE---------EEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE-----EEESEEEEEECSS
T ss_pred EEEchhhhccC---------ccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc-----ccCCceEEEEcCC
Confidence 99998754311 11223345777776544 48888899999999999887653 3458999999999
Q ss_pred CCcEEEEEeCCCeEEEEECCCCCccceEEc------c----CCCCeEEEEEecCCCEEEEEeC-----------CCeEEE
Q 003822 605 SPSIFATSSFDQDVKLWDLRQKPIQPCYTA------S----SSKGNVMVCFSPDDHYLLVSAV-----------DNEVRQ 663 (793)
Q Consensus 605 g~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l------~----~~~~~vsv~fSpdg~~Lasgs~-----------Dg~I~I 663 (793)
| ++.|..||++++|+..........++ . +...+.++.|.+++.++++-+. +-.++|
T Consensus 174 G---~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~~~~~~~~~~~~~~~~~~i 250 (388)
T 1xip_A 174 Q---LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFGNVISETDDEVSYDQKMYI 250 (388)
T ss_dssp E---EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEECCCCSSCSSCCCCEEEEE
T ss_pred c---eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEcCCCCCcCcccCCcceEEE
Confidence 8 67799999999999887643112223 1 2334557999999999987432 114666
Q ss_pred EEcCCCcEE-EEE-eee-cCCC-------CCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCCCCccc
Q 003822 664 LLAVDGRVH-LNF-GIT-ATGS-------SQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKGSGTSM 733 (793)
Q Consensus 664 wDl~tg~~~-~~l-~~~-~~~~-------~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~ 733 (793)
.....+... ..+ ... +.+. ....-..|.|+.+.+++.+|.-..=|-+++- ++.+. .+.... +...
T Consensus 251 i~~~~~~~~f~~~~d~~~~fg~~~R~~~~~~~~l~~w~~~~~~l~iv~Ss~S~di~il~~--~~~~~--~~~Ds~-Ra~l 325 (388)
T 1xip_A 251 IKHIDGSASFQETFDITPPFGQIVRFPYMYKVTLSGLIEPDANVNVLASSCSSEVSIWDS--KQVIE--PSQDSE-RAVL 325 (388)
T ss_dssp EEEETTEEEEEEESSSCCCCCCSCCCCCEEEEEEEEEEETTEEEEEEEETTCSBCEEECS--SSEEE--ESSGGG-CCBC
T ss_pred EEcCCCCceeEccccCcCCcCCccCCceeeeeehhcccccCCcEEEEeCCCCcceEEecc--ccEEe--ecCccc-ccee
Confidence 663333321 111 110 0111 1112235778777677777766543377753 23222 222211 2222
Q ss_pred eeeeccCCccccCCccEEEEEEcCCCCceee------------EeeEEEeCCCcEEEEcC
Q 003822 734 FVQSLRGDPFRDFNMSILAAYTRPSSKSEIV------------KVNLLASTDHCDKECSH 781 (793)
Q Consensus 734 ~v~sl~g~~~~~h~~~V~sva~~P~~~~~iv------------~~~ltaS~Dg~VkvW~~ 781 (793)
....- .+-+..+.+++..-.....+. ...++-+.+|.+..|..
T Consensus 326 Pl~~~-----~~~Dt~piG~alD~ss~~~v~~p~~g~e~~~plP~l~~L~~~G~L~~~~~ 380 (388)
T 1xip_A 326 PISEE-----TDKDTNPIGVAVDVVTSGTILEPCSGVDTIERLPLVYILNNEGSLQIVGL 380 (388)
T ss_dssp CBCTT-----TCCBCCEEEEEEECSCCC--------------CCEEEEEETTSEEEEEEE
T ss_pred ccCCC-----CCCCCcceEEEEEcccCceecCCCCCcccCCCCCEEEEEcCCceEEEEEE
Confidence 21111 112235666666543322221 12456788999888874
No 207
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.14 E-value=3.9e-09 Score=116.45 Aligned_cols=251 Identities=12% Similarity=0.037 Sum_probs=166.1
Q ss_pred eEEEEEeCCCCCEEEEEe----------CCCeEEEEECCCCeEEEEEeccC-C----CCCEEEEEEeeCCCCEEEEEEc-
Q 003822 456 PRQFEYHPSISCLMVFGT----------LDGEIVVVNHENENIVSYIPSFG-A----MNSVLGLCWLKKYPSKLIAGSD- 519 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs----------~DG~I~VWd~~t~~~i~~l~~~~-h----~~~V~sv~fs~~~g~~Lasgs~- 519 (793)
+. ++++| +++.++++. .++.|.+||..+++.+..+.... . ......+.++ ++|++++++..
T Consensus 81 P~-va~sp-DG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~s-pDGk~lyVan~~ 157 (386)
T 3sjl_D 81 PN-PVVAD-DGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLT-PDGKTLLFYQFS 157 (386)
T ss_dssp CE-EEECT-TSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEEC-TTSSEEEEEECS
T ss_pred Cc-EEECC-CCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEc-CCCCEEEEEEcC
Confidence 54 99999 777776654 36789999999999998886532 0 1134467776 89999888864
Q ss_pred -CCcEEEEEcCCCCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCC-CcEEEEEcc---cCCC
Q 003822 520 -NGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINS-GRRLQVFAD---MHKE 594 (793)
Q Consensus 520 -DgtV~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~t-g~~l~~~~~---gh~~ 594 (793)
+++|.++|+.+++..... .-.. . ...+......+++.+.||.+.+.++.+ ++...+... .-..
T Consensus 158 ~~~~VsVID~~t~~vv~tI----------~v~g-~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~ 225 (386)
T 3sjl_D 158 PAPAVGVVDLEGKAFKRML----------DVPD-C-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDE 225 (386)
T ss_dssp SSCEEEEEETTTTEEEEEE----------ECCS-E-EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTS
T ss_pred CCCeEEEEECCCCcEEEEE----------ECCC-c-ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccc
Confidence 689999999986542111 0001 1 112212345677778899999999986 665332221 0112
Q ss_pred CeE-EEEEc-CCCCcEEEEEeCCCeEEEEECCCCCccceEEcc---------C--CCCeEEEEEecCCCEEEEEeC----
Q 003822 595 HIN-VVKFS-NHSPSIFATSSFDQDVKLWDLRQKPIQPCYTAS---------S--SKGNVMVCFSPDDHYLLVSAV---- 657 (793)
Q Consensus 595 ~V~-sv~fs-pdg~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~---------~--~~~~vsv~fSpdg~~Lasgs~---- 657 (793)
++. ...|. ++| ++++ .+.+|.|.+.|+.+........+. + ..+...++++|+++.+++...
T Consensus 226 ~~~~~~~~~~~dG-~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~ 303 (386)
T 3sjl_D 226 FLINHPAYSQKAG-RLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDE 303 (386)
T ss_dssp CBCSCCEEETTTT-EEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCT
T ss_pred cccccceeEcCCC-cEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccc
Confidence 222 24664 566 4444 566899999999775322111110 0 011123778999999988753
Q ss_pred ------CCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCCCeEEEEE-eCCCcEEEEEEcCCCcEEEeeeecCCC
Q 003822 658 ------DNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNGRDYIVSG-SCDEHVVRICCAQTGRRLRDISLEGKG 728 (793)
Q Consensus 658 ------Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sg-s~Dg~II~IWDv~tg~~l~~~~L~gh~ 728 (793)
.+.|.++|+.+++.+..+... ..++.+++++|++.+|+++ ..++.| .++|..+++.++.+...+|.
T Consensus 304 ~~hk~~~~~V~viD~~t~kv~~~i~vg----~~~~~lavs~D~~~~ly~tn~~~~~V-sViD~~t~k~~~~i~~~~~p 376 (386)
T 3sjl_D 304 WRHKTASRFVVVLDAKTGERLAKFEMG----HEIDSINVSQDEKPLLYALSTGDKTL-YIHDAESGEELRSVNQLGHG 376 (386)
T ss_dssp TCTTSCEEEEEEEETTTCCEEEEEEEE----EEECEEEECSSSSCEEEEEETTTTEE-EEEETTTCCEEEEECCCCSS
T ss_pred cccCCCCCEEEEEECCCCeEEEEEECC----CCcceEEECCCCCeEEEEEcCCCCeE-EEEECCCCcEEEEecCCCCC
Confidence 257999999999999988742 3577899999997455554 558888 99999999999955555554
No 208
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.11 E-value=7.9e-08 Score=103.53 Aligned_cols=229 Identities=12% Similarity=0.073 Sum_probs=147.2
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcc
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSI 535 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~ 535 (793)
....+|+|.++.+++++..++.|..||..+++.. .+. ....+.+++|. ++++++++. .+ .|.+||..+++...
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~---~~~~v~~i~~~-~dg~l~v~~-~~-gl~~~d~~~g~~~~ 123 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA---LPFMGSALAKI-SDSKQLIAS-DD-GLFLRDTATGVLTL 123 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE---CSSCEEEEEEE-ETTEEEEEE-TT-EEEEEETTTCCEEE
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE---CCCcceEEEEe-CCCeEEEEE-CC-CEEEEECCCCcEEE
Confidence 5678999955667778778899999999887653 333 23579999997 577666654 44 49999987765321
Q ss_pred cccccCCceeEecCCCCeEEEEEccCCCEEEEEEC------CCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEE
Q 003822 536 RGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY------SKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIF 609 (793)
Q Consensus 536 ~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~------Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~L 609 (793)
. ..... ......+.++.+.+++..+++... .+.|..+| +++... +. .+....+.++|+|++..++
T Consensus 124 ~--~~~~~---~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~-~~-~~~~~~~~i~~s~dg~~ly 194 (326)
T 2ghs_A 124 H--AELES---DLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTK-LF-ADISIPNSICFSPDGTTGY 194 (326)
T ss_dssp E--ECSST---TCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEE-EE-EEESSEEEEEECTTSCEEE
T ss_pred E--eeCCC---CCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEE-ee-CCCcccCCeEEcCCCCEEE
Confidence 1 00000 001134788999888776555432 24566666 455433 32 1345678999999994344
Q ss_pred EEEeCCCeEEEEECC--CC-Ccc---ceEEccCCC-CeEEEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCC
Q 003822 610 ATSSFDQDVKLWDLR--QK-PIQ---PCYTASSSK-GNVMVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGS 682 (793)
Q Consensus 610 aTgs~Dg~IrIWDlr--t~-~~~---~~~~l~~~~-~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~ 682 (793)
++.+.++.|.+||+. ++ ... ....+.... .+..++++++|.+.++...++.|.+||. +++.+..+.. ..
T Consensus 195 v~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~---~~ 270 (326)
T 2ghs_A 195 FVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEV---PG 270 (326)
T ss_dssp EEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEEC---SC
T ss_pred EEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEEC---CC
Confidence 555667899999986 44 211 122232222 2335899999987777766789999998 6777666652 33
Q ss_pred CCcEEEEEe-eCCCeEEEEEeCC
Q 003822 683 SQNYTRSYY-LNGRDYIVSGSCD 704 (793)
Q Consensus 683 ~~v~s~afs-pdg~~~L~Sgs~D 704 (793)
..+..++|. ++++.++++...+
T Consensus 271 ~~~~~~af~g~d~~~L~vt~~~~ 293 (326)
T 2ghs_A 271 KQTTCPAFIGPDASRLLVTSARE 293 (326)
T ss_dssp SBEEEEEEESTTSCEEEEEEBCT
T ss_pred CCcEEEEEecCCCCEEEEEecCC
Confidence 468889998 7877344444444
No 209
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.10 E-value=2.2e-07 Score=98.37 Aligned_cols=228 Identities=11% Similarity=0.021 Sum_probs=145.1
Q ss_pred CCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEE
Q 003822 498 MNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALY 577 (793)
Q Consensus 498 ~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IW 577 (793)
..-..+..|++.++.++++...++.|..||..++... .+.....+.++++.+++.. +++. ++.|.+|
T Consensus 12 ~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-----------~~~~~~~~~~i~~~~dG~l-~v~~-~~~l~~~ 78 (297)
T 3g4e_A 12 CRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-----------RVTMDAPVSSVALRQSGGY-VATI-GTKFCAL 78 (297)
T ss_dssp CSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-----------EEECSSCEEEEEEBTTSSE-EEEE-TTEEEEE
T ss_pred CccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-----------EEeCCCceEEEEECCCCCE-EEEE-CCeEEEE
Confidence 3456688898545666777777899999999875431 2223356899999888884 4444 6789999
Q ss_pred ECCCCcEEEEEcc---cCCCCeEEEEEcCCCCcEEEEEeCC---------CeEEEEECCC-CCccceEEccCCCCeEEEE
Q 003822 578 DINSGRRLQVFAD---MHKEHINVVKFSNHSPSIFATSSFD---------QDVKLWDLRQ-KPIQPCYTASSSKGNVMVC 644 (793)
Q Consensus 578 Dl~tg~~l~~~~~---gh~~~V~sv~fspdg~~~LaTgs~D---------g~IrIWDlrt-~~~~~~~~l~~~~~~vsv~ 644 (793)
|..+++....... .....++.++++|+| +++++...+ ..-.+|.+.. +.... .......+..++
T Consensus 79 d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG-~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~--~~~~~~~pngi~ 155 (297)
T 3g4e_A 79 NWKEQSAVVLATVDNDKKNNRFNDGKVDPAG-RYFAGTMAEETAPAVLERHQGALYSLFPDHHVKK--YFDQVDISNGLD 155 (297)
T ss_dssp ETTTTEEEEEEECCTTCSSEEEEEEEECTTS-CEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEE--EEEEESBEEEEE
T ss_pred ECCCCcEEEEEecCCCCCCCCCCCEEECCCC-CEEEecCCcccccccccCCCcEEEEEECCCCEEE--EeeccccccceE
Confidence 9998765433321 122457899999999 666654321 2334554443 22221 112222344699
Q ss_pred EecCCCEEEEE-eCCCeEEEEEc--CCCcEE--EEEeeecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEE
Q 003822 645 FSPDDHYLLVS-AVDNEVRQLLA--VDGRVH--LNFGITATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRL 719 (793)
Q Consensus 645 fSpdg~~Lasg-s~Dg~I~IwDl--~tg~~~--~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l 719 (793)
|+|+|+.|+++ +.++.|.+|++ .+|... ..+.........+..+++.++|. +.++...++.| ..||..+|+.+
T Consensus 156 ~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~-lwva~~~~~~v-~~~d~~tG~~~ 233 (297)
T 3g4e_A 156 WSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGK-LWVACYNGGRV-IRLDPVTGKRL 233 (297)
T ss_dssp ECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSC-EEEEEETTTEE-EEECTTTCCEE
T ss_pred EcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCC-EEEEEcCCCEE-EEEcCCCceEE
Confidence 99999987655 45789999987 566542 11211111223566788999997 66666667788 99999999998
Q ss_pred EeeeecCCCCCccceeeeccCCccccCCccEEEEEEc-CCCCceee
Q 003822 720 RDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTR-PSSKSEIV 764 (793)
Q Consensus 720 ~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~-P~~~~~iv 764 (793)
. .+..+. ..+.+++|. |+.....+
T Consensus 234 ~--~i~~p~-------------------~~~t~~~f~g~d~~~L~v 258 (297)
T 3g4e_A 234 Q--TVKLPV-------------------DKTTSCCFGGKNYSEMYV 258 (297)
T ss_dssp E--EEECSS-------------------SBEEEEEEESGGGCEEEE
T ss_pred E--EEECCC-------------------CCceEEEEeCCCCCEEEE
Confidence 8 443322 247889998 75443333
No 210
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.09 E-value=1.6e-08 Score=113.24 Aligned_cols=282 Identities=11% Similarity=0.024 Sum_probs=182.3
Q ss_pred CCCEEEEEeC-C----CeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEE----------cCCcEEEEEcC
Q 003822 465 ISCLMVFGTL-D----GEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGS----------DNGSLKLYDIR 529 (793)
Q Consensus 465 d~~~Lasgs~-D----G~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs----------~DgtV~vWDl~ 529 (793)
+++.+++... + +.|.++|..+++.+..++. +. .+ .+.++ +++++++++. .++.|.++|..
T Consensus 83 ~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~v-G~-~P--gia~S-pDgk~lyVan~~~~~~~~G~~~~~VsviD~~ 157 (426)
T 3c75_H 83 DARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDG-GF-LP--HPVAA-EDGSFFAQASTVFERIARGKRTDYVEVFDPV 157 (426)
T ss_dssp CTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEE-CS-SC--EEEEC-TTSSCEEEEEEEEEETTEEEEEEEEEEECTT
T ss_pred CCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEEC-CC-CC--ceEEC-CCCCEEEEEeccccccccCCCCCEEEEEECC
Confidence 5555555443 2 6999999999999999985 32 34 78887 7888777775 46789999999
Q ss_pred CCCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEEC--CCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCc
Q 003822 530 HMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY--SKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPS 607 (793)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~--Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~ 607 (793)
+.+.......+... .+........+.++|++++++++.. ++.|.+.|+.+++.+.++.-+ +. ....|++..
T Consensus 158 t~~vv~~I~v~g~~--r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~--g~---~~~~p~g~~ 230 (426)
T 3c75_H 158 TFLPIADIELPDAP--RFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVP--DC---YHIFPASPT 230 (426)
T ss_dssp TCCEEEEEEETTCC--CCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECC--SE---EEEEEEETT
T ss_pred CCcEEEEEECCCcc--ccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcC--Cc---eeeccCCCc
Confidence 87652111100000 0000123457788899999998874 588999999999999988731 11 344555556
Q ss_pred EEEEEeCCCeEEEEECCCCCccceE--EccCCCCeE--EEEEecCCCEEEEEeCCCeEEEEEcCCCcEE--EEEeeecCC
Q 003822 608 IFATSSFDQDVKLWDLRQKPIQPCY--TASSSKGNV--MVCFSPDDHYLLVSAVDNEVRQLLAVDGRVH--LNFGITATG 681 (793)
Q Consensus 608 ~LaTgs~Dg~IrIWDlrt~~~~~~~--~l~~~~~~v--sv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~--~~l~~~~~~ 681 (793)
.+++.+.||.+.+.+..+++..... .+......+ .+.|++++..++..+..+.+.+.|...+... ..+......
T Consensus 231 ~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~ 310 (426)
T 3c75_H 231 VFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEA 310 (426)
T ss_dssp EEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTT
T ss_pred EEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeecccc
Confidence 7777888888888888554322111 111111221 3678999998888888899999998765432 112110000
Q ss_pred -------CCCcEEEEEeeCCCeEEEEEeC---------CCcEEEEEEcCCCcEEEeeeecCCCCCccceeeeccCCcccc
Q 003822 682 -------SSQNYTRSYYLNGRDYIVSGSC---------DEHVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPFRD 745 (793)
Q Consensus 682 -------~~~v~s~afspdg~~~L~Sgs~---------Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~ 745 (793)
......++++++++..+++... ++.| .+.|..+++.+..+.+.+
T Consensus 311 ~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~V-sVID~~T~kvv~~I~vg~------------------- 370 (426)
T 3c75_H 311 ERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFV-VVLNAETGERINKIELGH------------------- 370 (426)
T ss_dssp TGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEE-EEEETTTCCEEEEEEEEE-------------------
T ss_pred ccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEE-EEEECCCCeEEEEEECCC-------------------
Confidence 0111236889998844444321 2468 999999999999332221
Q ss_pred CCccEEEEEEcCCCCceeeEeeEEEe-CCCcEEEEcCCCCC
Q 003822 746 FNMSILAAYTRPSSKSEIVKVNLLAS-TDHCDKECSHGQHS 785 (793)
Q Consensus 746 h~~~V~sva~~P~~~~~iv~~~ltaS-~Dg~VkvW~~~~~~ 785 (793)
...+++++|+++..++ ++. .+++|.+++.....
T Consensus 371 ---~P~gia~spDg~~~ly----v~n~~s~~VsVID~~t~k 404 (426)
T 3c75_H 371 ---EIDSINVSQDAEPLLY----ALSAGTQTLHIYDAATGE 404 (426)
T ss_dssp ---EECEEEECCSSSCEEE----EEETTTTEEEEEETTTCC
T ss_pred ---CcCeEEEccCCCEEEE----EEcCCCCeEEEEECCCCC
Confidence 2568899998654555 665 58999999976554
No 211
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.09 E-value=5.2e-09 Score=124.89 Aligned_cols=243 Identities=10% Similarity=0.064 Sum_probs=157.4
Q ss_pred ceEEEEEeCCCCCEEEEEe-----CCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCc-------
Q 003822 455 RPRQFEYHPSISCLMVFGT-----LDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGS------- 522 (793)
Q Consensus 455 ~V~~vafsP~d~~~Lasgs-----~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~Dgt------- 522 (793)
.+..++||| |+++||.+. ...+|++||+.+++.+... ..+ .....++|+ +++.|+.++.+..
T Consensus 130 ~l~~~~~Sp-Dg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~-~~~--~k~~~~~Ws--Dg~~l~y~~~~~~~~~~~~~ 203 (693)
T 3iuj_A 130 ALDQLSFSR-DGRILAYSLSLAGSDWREIHLMDVESKQPLETP-LKD--VKFSGISWL--GNEGFFYSSYDKPDGSELSA 203 (693)
T ss_dssp EEEEEEECT-TSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE-EEE--EESCCCEEE--TTTEEEEEESSCCC------
T ss_pred EEEEEEECC-CCCEEEEEEecCCCceEEEEEEECCCCCCCccc-cCC--ceeccEEEe--CCCEEEEEEecCcccccccc
Confidence 478899999 899888533 3357999999999865431 111 112467896 8888888887743
Q ss_pred ------EEEEEcCCCCCcccccccCCceeEecC----CCCeEEEEEccCCCEEEEEEC----CCcEEEEECCCCc-EEEE
Q 003822 523 ------LKLYDIRHMPPSIRGMHYGAGTVTFDE----FDQLTSVHVNSMDELFLASGY----SKNIALYDINSGR-RLQV 587 (793)
Q Consensus 523 ------V~vWDl~~~~~~~~~~~~~~~~~~~~~----~~~V~sv~~s~~~~~lla~g~----Dg~I~IWDl~tg~-~l~~ 587 (793)
|++|++.+....- ...+.. ...+.++.++|++..++.... ++.|+++|+.++. ....
T Consensus 204 ~~~~~~v~~~~lgt~~~~~--------~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~ 275 (693)
T 3iuj_A 204 RTDQHKVYFHRLGTAQEDD--------RLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLT 275 (693)
T ss_dssp -CCCCEEEEEETTSCGGGC--------EEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEE
T ss_pred cCCCcEEEEEECCCCcccc--------eEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEE
Confidence 9999988754311 111211 234678899999988766542 2589999998764 3445
Q ss_pred EcccCCCCeEEEEEcCCCCcEEEEEeCC---CeEEEEECCCCCccceEE-ccCCCCeEEEEEecCCCEEEEEeCCC---e
Q 003822 588 FADMHKEHINVVKFSNHSPSIFATSSFD---QDVKLWDLRQKPIQPCYT-ASSSKGNVMVCFSPDDHYLLVSAVDN---E 660 (793)
Q Consensus 588 ~~~gh~~~V~sv~fspdg~~~LaTgs~D---g~IrIWDlrt~~~~~~~~-l~~~~~~vsv~fSpdg~~Lasgs~Dg---~ 660 (793)
+. .+....... |+++|..+++++..+ +.|..+|+.++....... .......+ .|++++++|+....++ .
T Consensus 276 l~-~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~ 351 (693)
T 3iuj_A 276 VQ-GDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATAR 351 (693)
T ss_dssp EE-CSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEE
T ss_pred Ee-CCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeE
Confidence 55 355555555 666665666666554 579999998865422222 22333333 8999999988776544 6
Q ss_pred EEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCCCeEEEEEeCC---CcEEEEEEcCCCcEE
Q 003822 661 VRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNGRDYIVSGSCD---EHVVRICCAQTGRRL 719 (793)
Q Consensus 661 I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~D---g~II~IWDv~tg~~l 719 (793)
|++||+..+ ....+.. .+...+..+.+++++..++++.+.. +.+ +.||+.+++..
T Consensus 352 l~~~d~~g~-~~~~l~~--p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l-~~~d~~~g~~~ 409 (693)
T 3iuj_A 352 VEQFDYEGK-RVREVAL--PGLGSVSGFNGKHDDPALYFGFENYAQPPTL-YRFEPKSGAIS 409 (693)
T ss_dssp EEEECTTSC-EEEEECC--SSSSEEEECCCCTTCSCEEEEEECSSSCCEE-EEECTTTCCEE
T ss_pred EEEEECCCC-eeEEeec--CCCceEEeeecCCCCCEEEEEecCCCCCCEE-EEEECCCCeEE
Confidence 889998754 4444432 2333455566777887555554432 677 99999888643
No 212
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.09 E-value=8e-08 Score=100.19 Aligned_cols=234 Identities=6% Similarity=0.004 Sum_probs=157.1
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcc
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSI 535 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~ 535 (793)
+..+++++ ++.++++...++.|..||.. ++.. .+........+.++++. ++++++++...++.|..||.. ++...
T Consensus 64 ~~~i~~~~-~g~l~v~~~~~~~v~~~d~~-g~~~-~~~~~~~~~~~~~i~~~-~~g~l~v~~~~~~~i~~~~~~-g~~~~ 138 (300)
T 2qc5_A 64 VMCLIVSS-LGDIWFTENGANKIGKLSKK-GGFT-EYPLPQPDSGPYGITEG-LNGDIWFTQLNGDRIGKLTAD-GTIYE 138 (300)
T ss_dssp EEEEEECT-TSCEEEEETTTTEEEEECTT-SCEE-EEECSSTTCCEEEEEEC-STTCEEEEETTTTEEEEECTT-SCEEE
T ss_pred ceeEEECC-CCCEEEEecCCCeEEEECCC-CCeE-EecCCCCCCCCccceEC-CCCCEEEEccCCCeEEEECCC-CCEEE
Confidence 88999999 88888877778899999988 6553 33332344678999986 678877777667889999876 33211
Q ss_pred cccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeCC
Q 003822 536 RGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFD 615 (793)
Q Consensus 536 ~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~D 615 (793)
.... .....+.++++.+++..+++...++.|..||. +++........+...+..+++.+++ .++++....
T Consensus 139 ~~~~--------~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g-~l~v~~~~~ 208 (300)
T 2qc5_A 139 YDLP--------NKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDG-ALWFVEIMG 208 (300)
T ss_dssp EECS--------STTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTS-SEEEEETTT
T ss_pred ccCC--------CCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCC-CEEEEccCC
Confidence 1000 12245789999887775554445788999998 5655432221345678999999988 777777677
Q ss_pred CeEEEEECCCCCccceEEcc-CCCCeEEEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCC
Q 003822 616 QDVKLWDLRQKPIQPCYTAS-SSKGNVMVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNG 694 (793)
Q Consensus 616 g~IrIWDlrt~~~~~~~~l~-~~~~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg 694 (793)
+.|.+||. ++... ..... ....+..++++++|+..++...++.|..||. +++.. .+.. ..+...+..+++.++|
T Consensus 209 ~~i~~~~~-~g~~~-~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~~-~~~~~~~~~i~~~~~g 283 (300)
T 2qc5_A 209 NKIGRITT-TGEIS-EYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQ-EYQL-QTENAEPHGITFGKDG 283 (300)
T ss_dssp TEEEEECT-TCCEE-EEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEE-EEEC-CSTTCCCCCEEECTTS
T ss_pred CEEEEEcC-CCcEE-EEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEE-EEEC-CccCCccceeEeCCCC
Confidence 88999998 43322 22232 2345567999999996666656789999998 55543 3332 2234557788888888
Q ss_pred CeEEEEEeCCCcEEEEEEc
Q 003822 695 RDYIVSGSCDEHVVRICCA 713 (793)
Q Consensus 695 ~~~L~Sgs~Dg~II~IWDv 713 (793)
. +.++.. . .+ ..+|.
T Consensus 284 ~-l~v~~~-~-~i-~~~~p 298 (300)
T 2qc5_A 284 S-VWFALK-C-KI-GKLNL 298 (300)
T ss_dssp C-EEEECS-S-EE-EEEEE
T ss_pred C-EEEEcc-C-ce-EEeCC
Confidence 7 444443 4 66 66664
No 213
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.07 E-value=2.9e-08 Score=109.45 Aligned_cols=283 Identities=11% Similarity=0.039 Sum_probs=180.6
Q ss_pred EeCCCCCEEEEEeC-----CCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEE----------cCCcEEE
Q 003822 461 YHPSISCLMVFGTL-----DGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGS----------DNGSLKL 525 (793)
Q Consensus 461 fsP~d~~~Lasgs~-----DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs----------~DgtV~v 525 (793)
..| +++.+.+... ++.|.+.|..+++.+..++. +. .+ .++++ ++++++++++ .++.|.+
T Consensus 40 ~~p-d~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~v-G~-~P--~va~s-pDG~~lyVan~~~~r~~~G~~~~~Vsv 113 (386)
T 3sjl_D 40 PAP-DARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDG-GF-LP--NPVVA-DDGSFIAHASTVFSRIARGERTDYVEV 113 (386)
T ss_dssp CCC-CTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEE-CS-SC--EEEEC-TTSSCEEEEEEEEEETTEEEEEEEEEE
T ss_pred cCC-CCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEEC-CC-CC--cEEEC-CCCCEEEEEcccccccccCCCCCEEEE
Confidence 356 6777776654 68999999999999998875 32 23 38887 7888877765 3678999
Q ss_pred EEcCCCCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEEC--CCcEEEEECCCCcEEEEEcccCCCCeEEEEEcC
Q 003822 526 YDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY--SKNIALYDINSGRRLQVFADMHKEHINVVKFSN 603 (793)
Q Consensus 526 WDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~--Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fsp 603 (793)
||..+.+.......+... ..........+.++|++.+++++.. ++.|.++|+.+++.+.++.- .+. ....|
T Consensus 114 iD~~t~~v~~~I~v~~g~--r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v--~g~---~~~~P 186 (386)
T 3sjl_D 114 FDPVTLLPTADIELPDAP--RFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDV--PDC---YHIFP 186 (386)
T ss_dssp ECTTTCCEEEEEEETTCC--CCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEEC--CSE---EEEEE
T ss_pred EECCCCeEEEEEECCCcc--ccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEEC--CCc---ceeec
Confidence 999987642111100000 0000123567889999999888873 68999999999999999872 221 22335
Q ss_pred CCCcEEEEEeCCCeEEEEECCC-CCccceEE--ccCCCCeE--EEEEe-cCCCEEEEEeCCCeEEEEEcCCCc--EEEEE
Q 003822 604 HSPSIFATSSFDQDVKLWDLRQ-KPIQPCYT--ASSSKGNV--MVCFS-PDDHYLLVSAVDNEVRQLLAVDGR--VHLNF 675 (793)
Q Consensus 604 dg~~~LaTgs~Dg~IrIWDlrt-~~~~~~~~--l~~~~~~v--sv~fS-pdg~~Lasgs~Dg~I~IwDl~tg~--~~~~l 675 (793)
.+...+++.+.||.+.+.++.+ ++...... +......+ ...|. ++|++++ .+.+|.|++.|..++. ....+
T Consensus 187 ~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~ 265 (386)
T 3sjl_D 187 TAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAV 265 (386)
T ss_dssp EETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCE
T ss_pred CCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecce
Confidence 5556788888899999999876 43321111 01111111 25665 6786655 5558999999997664 33333
Q ss_pred eeec-----CC--CCCcEEEEEeeCCCeEEEEEeC---------CCcEEEEEEcCCCcEEEeeeecCCCCCccceeeecc
Q 003822 676 GITA-----TG--SSQNYTRSYYLNGRDYIVSGSC---------DEHVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLR 739 (793)
Q Consensus 676 ~~~~-----~~--~~~v~s~afspdg~~~L~Sgs~---------Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~ 739 (793)
.... .+ ......++++++++.++++-.. ...| .+.|+.+++.++.+.+..
T Consensus 266 ~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V-~viD~~t~kv~~~i~vg~------------- 331 (386)
T 3sjl_D 266 EALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFV-VVLDAKTGERLAKFEMGH------------- 331 (386)
T ss_dssp ESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEE-EEEETTTCCEEEEEEEEE-------------
T ss_pred eccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEE-EEEECCCCeEEEEEECCC-------------
Confidence 2000 00 0122246668888844444321 2457 999999999999333321
Q ss_pred CCccccCCccEEEEEEcCCCCceeeEeeEEE-eCCCcEEEEcCCCC
Q 003822 740 GDPFRDFNMSILAAYTRPSSKSEIVKVNLLA-STDHCDKECSHGQH 784 (793)
Q Consensus 740 g~~~~~h~~~V~sva~~P~~~~~iv~~~lta-S~Dg~VkvW~~~~~ 784 (793)
.+.+++++|+++..++ ++ ..+++|.+++....
T Consensus 332 ---------~~~~lavs~D~~~~ly----~tn~~~~~VsViD~~t~ 364 (386)
T 3sjl_D 332 ---------EIDSINVSQDEKPLLY----ALSTGDKTLYIHDAESG 364 (386)
T ss_dssp ---------EECEEEECSSSSCEEE----EEETTTTEEEEEETTTC
T ss_pred ---------CcceEEECCCCCeEEE----EEcCCCCeEEEEECCCC
Confidence 3678999998755555 54 45899999987654
No 214
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.07 E-value=1.3e-08 Score=112.53 Aligned_cols=183 Identities=13% Similarity=0.108 Sum_probs=130.5
Q ss_pred CEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCccc-ccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEE
Q 003822 500 SVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIR-GMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYD 578 (793)
Q Consensus 500 ~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~~-~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWD 578 (793)
.+..++++ +...++++|+.+ .+.+|++........ ............... |+.++| ++..++++ .++.|++||
T Consensus 39 ~~nlLais-~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d 112 (388)
T 1xip_A 39 SLQNLDIS-NSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLD 112 (388)
T ss_dssp CCBCEEEE-TTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred cccEEEEc-CCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence 57888887 677889999988 566799765331000 000011112334455 999999 66777776 889999999
Q ss_pred CCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEECCCCCccceEEccCCCCeEEEEEecCCCEEEEEeCC
Q 003822 579 INSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLVSAVD 658 (793)
Q Consensus 579 l~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs~D 658 (793)
+.+........ .|...+.++.+.+. + +++++.||.|.+||+.++.... . ...+.+++|||+| ++.|..|
T Consensus 113 v~sl~~~~~~~-~~~~~v~~i~~~~p--~-~av~~~dG~L~v~dl~~~~~~~---~--~~~Vs~v~WSpkG--~~vg~~d 181 (388)
T 1xip_A 113 LEELSEFRTVT-SFEKPVFQLKNVNN--T-LVILNSVNDLSALDLRTKSTKQ---L--AQNVTSFDVTNSQ--LAVLLKD 181 (388)
T ss_dssp SSSTTCEEEEE-ECSSCEEEEEECSS--E-EEEEETTSEEEEEETTTCCEEE---E--EESEEEEEECSSE--EEEEETT
T ss_pred chhhhccCccc-eeecceeeEEecCC--C-EEEEECCCCEEEEEccCCcccc---c--cCCceEEEEcCCc--eEEEEcC
Confidence 99876555555 47788988887653 3 8889999999999999775432 1 2356679999999 7889999
Q ss_pred CeEEEEEcCCCcE--EEEEeeec------CCCCCcEEEEEeeCCCeEEEE
Q 003822 659 NEVRQLLAVDGRV--HLNFGITA------TGSSQNYTRSYYLNGRDYIVS 700 (793)
Q Consensus 659 g~I~IwDl~tg~~--~~~l~~~~------~~~~~v~s~afspdg~~~L~S 700 (793)
|.+++|+...+.. ..++...+ .+...+.++.|.+++. ++++
T Consensus 182 g~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~-flv~ 230 (388)
T 1xip_A 182 RSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQD-FLAV 230 (388)
T ss_dssp SCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSE-EEEE
T ss_pred CcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCe-EEEE
Confidence 9999999887775 44552111 2457789999999988 7666
No 215
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.99 E-value=5.3e-08 Score=116.11 Aligned_cols=250 Identities=12% Similarity=0.138 Sum_probs=161.0
Q ss_pred CCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCC---CEEE-EEEeeCCCCEEEEEE------cCCcEEEEEcCCCCCcc
Q 003822 466 SCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMN---SVLG-LCWLKKYPSKLIAGS------DNGSLKLYDIRHMPPSI 535 (793)
Q Consensus 466 ~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~---~V~s-v~fs~~~g~~Lasgs------~DgtV~vWDl~~~~~~~ 535 (793)
+..+++++.||.|..+|..+|+.+.......+.. .+.+ ... .++ .+++++ .+|.|..||..+++...
T Consensus 121 ~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v--~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W 197 (689)
T 1yiq_A 121 KGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRV--VNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAW 197 (689)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEE--ETT-EEEECCBCTTTCCBCEEEEEETTTCCEEE
T ss_pred CCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEE--ECC-EEEEEeCCCccCCCCEEEEEECCCCcEEE
Confidence 4678889999999999999999987776420111 1111 111 133 455543 37899999999988754
Q ss_pred cccccC-Ccee------------Ee---------cCCCCeEEEEEccCCCEEEEEECCC-------------------cE
Q 003822 536 RGMHYG-AGTV------------TF---------DEFDQLTSVHVNSMDELFLASGYSK-------------------NI 574 (793)
Q Consensus 536 ~~~~~~-~~~~------------~~---------~~~~~V~sv~~s~~~~~lla~g~Dg-------------------~I 574 (793)
...... .... .+ .+......+++.+..+.++++..++ .|
T Consensus 198 ~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v 277 (689)
T 1yiq_A 198 RFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSI 277 (689)
T ss_dssp EEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEE
T ss_pred EecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeE
Confidence 432100 0000 00 0011112567778888888887665 39
Q ss_pred EEEECCCCcEEEEEccc-CC-------CCeEEEEEcCCCC--cEEEEEeCCCeEEEEECCCCCccceEEccC--------
Q 003822 575 ALYDINSGRRLQVFADM-HK-------EHINVVKFSNHSP--SIFATSSFDQDVKLWDLRQKPIQPCYTASS-------- 636 (793)
Q Consensus 575 ~IWDl~tg~~l~~~~~g-h~-------~~V~sv~fspdg~--~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~-------- 636 (793)
..||..+|+.+..++.. |. .++.-.....+|. ..++.++.+|.++++|.++++..-...+..
T Consensus 278 ~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~ 357 (689)
T 1yiq_A 278 VAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMD 357 (689)
T ss_dssp EEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEE
T ss_pred EEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccC
Confidence 99999999999988732 21 1222222223441 278889999999999999986531111110
Q ss_pred ------------------------------CCCeEEEEEecCCCEEEEEeC-----------------------------
Q 003822 637 ------------------------------SKGNVMVCFSPDDHYLLVSAV----------------------------- 657 (793)
Q Consensus 637 ------------------------------~~~~vsv~fSpdg~~Lasgs~----------------------------- 657 (793)
....-.++|+|+...+++.+.
T Consensus 358 ~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 437 (689)
T 1yiq_A 358 MKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTG 437 (689)
T ss_dssp TTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEEC
T ss_pred ccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCcccc
Confidence 001112789999888887632
Q ss_pred ----------------CCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEEe
Q 003822 658 ----------------DNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRLRD 721 (793)
Q Consensus 658 ----------------Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~~ 721 (793)
+|.|+.||+.+|+.+.++... .......+...+. +++.|+.||.+ +.||.+||+.+..
T Consensus 438 ~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~----~~~~~g~~~tagg-lvf~gt~dg~l-~a~D~~tG~~lw~ 511 (689)
T 1yiq_A 438 MMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYV----TIFNGGTLSTAGN-LVFEGSADGRV-IAYAADTGEKLWE 511 (689)
T ss_dssp CCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEES----SSCCCCEEEETTT-EEEEECTTSEE-EEEETTTCCEEEE
T ss_pred ccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCC----CCccCccceECCC-EEEEECCCCcE-EEEECCCCcccee
Confidence 377999999999988777542 2223335666777 89999999999 9999999999994
Q ss_pred eee
Q 003822 722 ISL 724 (793)
Q Consensus 722 ~~L 724 (793)
+.+
T Consensus 512 ~~~ 514 (689)
T 1yiq_A 512 QPA 514 (689)
T ss_dssp EEC
T ss_pred eeC
Confidence 443
No 216
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.95 E-value=3e-08 Score=111.07 Aligned_cols=242 Identities=14% Similarity=0.046 Sum_probs=162.3
Q ss_pred eEEEEEeCCCCCEEEEEe----------CCCeEEEEECCCCeEEEEEeccCC-----CCCEEEEEEeeCCCCEEEEEEc-
Q 003822 456 PRQFEYHPSISCLMVFGT----------LDGEIVVVNHENENIVSYIPSFGA-----MNSVLGLCWLKKYPSKLIAGSD- 519 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs----------~DG~I~VWd~~t~~~i~~l~~~~h-----~~~V~sv~fs~~~g~~Lasgs~- 519 (793)
+ .++++| +++.++++. .++.|.++|..+++.+..+...+. ......+.++ ++|++++++..
T Consensus 121 P-gia~Sp-Dgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~s-pDGk~lyV~n~~ 197 (426)
T 3c75_H 121 P-HPVAAE-DGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALT-PDNKNLLFYQFS 197 (426)
T ss_dssp C-EEEECT-TSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEEC-TTSSEEEEEECS
T ss_pred C-ceEECC-CCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEc-CCCCEEEEEecC
Confidence 6 799999 777776665 467899999999999988865311 1223466776 89999988874
Q ss_pred -CCcEEEEEcCCCCCcccccccCCceeEecCCCCeEEEEEccCC-CEEEEEECCCcEEEEECCCCcEEEE----EcccCC
Q 003822 520 -NGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMD-ELFLASGYSKNIALYDINSGRRLQV----FADMHK 593 (793)
Q Consensus 520 -DgtV~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~-~~lla~g~Dg~I~IWDl~tg~~l~~----~~~gh~ 593 (793)
+++|.+.|+.+.+.... +. . .. . ....|.+ ..+++.+.||.+.+.+..+++.... +. ...
T Consensus 198 ~~~~VsVID~~t~kvv~~-I~-------v--~g-~--~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~-v~~ 263 (426)
T 3c75_H 198 PAPAVGVVDLEGKTFDRM-LD-------V--PD-C--YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFH-TED 263 (426)
T ss_dssp SSCEEEEEETTTTEEEEE-EE-------C--CS-E--EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCS-CTT
T ss_pred CCCeEEEEECCCCeEEEE-EE-------c--CC-c--eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeec-cCC
Confidence 57899999998654211 11 0 00 1 1222333 5566667788888888866665532 21 111
Q ss_pred CCe-EEEEEcCCCCcEEEEEeCCCeEEEEECCCCCccc--eEEccC---------CCCeEEEEEecCCCEEEEEeC----
Q 003822 594 EHI-NVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQP--CYTASS---------SKGNVMVCFSPDDHYLLVSAV---- 657 (793)
Q Consensus 594 ~~V-~sv~fspdg~~~LaTgs~Dg~IrIWDlrt~~~~~--~~~l~~---------~~~~vsv~fSpdg~~Lasgs~---- 657 (793)
.++ ..+.|.+++ ..++..+..+.|.+.|........ .+.... ..+...++++|+|+.++++..
T Consensus 264 ~p~~~~~~~~~dg-~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~ 342 (426)
T 3c75_H 264 ELLINHPAFSLRS-GRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDE 342 (426)
T ss_dssp SCBCSCCEECTTT-CEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCT
T ss_pred CceeeEeeecCCC-CEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEeccccc
Confidence 222 235678888 455555678899999987643211 111100 001112689999998888753
Q ss_pred ------CCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCCCeEEEEEe-CCCcEEEEEEcCCCcEEE
Q 003822 658 ------DNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNGRDYIVSGS-CDEHVVRICCAQTGRRLR 720 (793)
Q Consensus 658 ------Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs-~Dg~II~IWDv~tg~~l~ 720 (793)
++.|.++|+.+++.+.++... .....++|+|||+.++++.. .++.| .|+|+.+++.++
T Consensus 343 gthk~~s~~VsVID~~T~kvv~~I~vg----~~P~gia~spDg~~~lyv~n~~s~~V-sVID~~t~kvv~ 407 (426)
T 3c75_H 343 WKHKAASRFVVVLNAETGERINKIELG----HEIDSINVSQDAEPLLYALSAGTQTL-HIYDAATGEELR 407 (426)
T ss_dssp TCTTSCEEEEEEEETTTCCEEEEEEEE----EEECEEEECCSSSCEEEEEETTTTEE-EEEETTTCCEEE
T ss_pred ccccCCCCEEEEEECCCCeEEEEEECC----CCcCeEEEccCCCEEEEEEcCCCCeE-EEEECCCCCEEE
Confidence 357999999999999988642 24778999999984555555 58899 999999999998
No 217
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.95 E-value=3.1e-07 Score=109.25 Aligned_cols=251 Identities=13% Similarity=0.151 Sum_probs=164.1
Q ss_pred CCEEEEEeCCCeEEEEECCCCeEEEEEecc-CCC--CCEEEEEEeeCCCCEEEEEEc------CCcEEEEEcCCCCCccc
Q 003822 466 SCLMVFGTLDGEIVVVNHENENIVSYIPSF-GAM--NSVLGLCWLKKYPSKLIAGSD------NGSLKLYDIRHMPPSIR 536 (793)
Q Consensus 466 ~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~-~h~--~~V~sv~fs~~~g~~Lasgs~------DgtV~vWDl~~~~~~~~ 536 (793)
+..+++++.|+.|..+|..+|+.+..+... ... ..+.+--.. .+..+++++. +|.|..||..+++....
T Consensus 128 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~ 205 (677)
T 1kb0_A 128 KGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGERKWR 205 (677)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCcEEEE
Confidence 468888999999999999999998887642 100 112110001 2345555543 78999999999887543
Q ss_pred ccccCCce-------------eEe----------cCCCCeEEEEEccCCCEEEEEECCC-------------------cE
Q 003822 537 GMHYGAGT-------------VTF----------DEFDQLTSVHVNSMDELFLASGYSK-------------------NI 574 (793)
Q Consensus 537 ~~~~~~~~-------------~~~----------~~~~~V~sv~~s~~~~~lla~g~Dg-------------------~I 574 (793)
........ ..+ ........+++.+.++.++++..++ .|
T Consensus 206 ~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv 285 (677)
T 1kb0_A 206 WFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASI 285 (677)
T ss_dssp EESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEE
T ss_pred eccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEE
Confidence 32211100 000 0111123567778888888776543 59
Q ss_pred EEEECCCCcEEEEEcccCC--------CCeEEEEEcCCCC--cEEEEEeCCCeEEEEECCCCCccceEEccC--------
Q 003822 575 ALYDINSGRRLQVFADMHK--------EHINVVKFSNHSP--SIFATSSFDQDVKLWDLRQKPIQPCYTASS-------- 636 (793)
Q Consensus 575 ~IWDl~tg~~l~~~~~gh~--------~~V~sv~fspdg~--~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~-------- 636 (793)
..+|..+|+.+..++..+. ....-+....+|. ..++.++.+|.++++|.++++..-...+..
T Consensus 286 ~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d 365 (677)
T 1kb0_A 286 VALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYD 365 (677)
T ss_dssp EEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEC
T ss_pred EEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccC
Confidence 9999999999988873221 1222233333552 478889999999999999986432222111
Q ss_pred --------------------------CCCeEEEEEecCCCEEEEEeCC--------------------------------
Q 003822 637 --------------------------SKGNVMVCFSPDDHYLLVSAVD-------------------------------- 658 (793)
Q Consensus 637 --------------------------~~~~vsv~fSpdg~~Lasgs~D-------------------------------- 658 (793)
....-.++|+|++..+++...+
T Consensus 366 ~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~ 445 (677)
T 1kb0_A 366 KHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKF 445 (677)
T ss_dssp TTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEE
T ss_pred CCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccc
Confidence 0001136899998888886532
Q ss_pred -----------CeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEEeeee
Q 003822 659 -----------NEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRLRDISL 724 (793)
Q Consensus 659 -----------g~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L 724 (793)
|.|..||+.+|+.+.++... .......+..++. .++.|+.||.+ ++||..+|+.+..+.+
T Consensus 446 ~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~----~~~~~g~~~~~g~-~v~~g~~dg~l-~a~D~~tG~~lw~~~~ 516 (677)
T 1kb0_A 446 FNAEPPKSKPFGRLLAWDPVAQKAAWSVEHV----SPWNGGTLTTAGN-VVFQGTADGRL-VAYHAATGEKLWEAPT 516 (677)
T ss_dssp ECSSCCCSCCEEEEEEEETTTTEEEEEEEES----SSCCCCEEEETTT-EEEEECTTSEE-EEEETTTCCEEEEEEC
T ss_pred cccccCCCCCccEEEEEeCCCCcEEeecCCC----CCCcCcceEeCCC-EEEEECCCCcE-EEEECCCCceeeeeeC
Confidence 78999999999988777532 2234455667777 78889999999 9999999999994443
No 218
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.94 E-value=1e-06 Score=94.83 Aligned_cols=218 Identities=10% Similarity=-0.031 Sum_probs=135.3
Q ss_pred EEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECC
Q 003822 501 VLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDIN 580 (793)
Q Consensus 501 V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~ 580 (793)
..+..|++.++.++++...++.|..||..+++.. .+.....+.++.+.+++..++ ++. ..|.+||..
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-----------~~~~~~~v~~i~~~~dg~l~v-~~~-~gl~~~d~~ 117 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKT-----------VHALPFMGSALAKISDSKQLI-ASD-DGLFLRDTA 117 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-----------EEECSSCEEEEEEEETTEEEE-EET-TEEEEEETT
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-----------EEECCCcceEEEEeCCCeEEE-EEC-CCEEEEECC
Confidence 4567887434556677767889999998875421 112235688999987766555 444 449999998
Q ss_pred CCcEEEEEcc--c-CCCCeEEEEEcCCCCcEEEEEeC------CCeEEEEECCCCCccceEEccCCCCeEEEEEecCCCE
Q 003822 581 SGRRLQVFAD--M-HKEHINVVKFSNHSPSIFATSSF------DQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHY 651 (793)
Q Consensus 581 tg~~l~~~~~--g-h~~~V~sv~fspdg~~~LaTgs~------Dg~IrIWDlrt~~~~~~~~l~~~~~~vsv~fSpdg~~ 651 (793)
+++....... + ....++.++++|+| +++++... .+.|..+| +++..... ........++|+|+|+.
T Consensus 118 ~g~~~~~~~~~~~~~~~~~~~i~~d~~G-~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~--~~~~~~~~i~~s~dg~~ 192 (326)
T 2ghs_A 118 TGVLTLHAELESDLPGNRSNDGRMHPSG-ALWIGTMGRKAETGAGSIYHVA--KGKVTKLF--ADISIPNSICFSPDGTT 192 (326)
T ss_dssp TCCEEEEECSSTTCTTEEEEEEEECTTS-CEEEEEEETTCCTTCEEEEEEE--TTEEEEEE--EEESSEEEEEECTTSCE
T ss_pred CCcEEEEeeCCCCCCCCCCCCEEECCCC-CEEEEeCCCcCCCCceEEEEEe--CCcEEEee--CCCcccCCeEEcCCCCE
Confidence 8875433321 1 12468899999999 66655432 24566666 33222221 12223446999999998
Q ss_pred EEEEe-CCCeEEEEEcC--CC-cEE--EEEeeecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEEeeeec
Q 003822 652 LLVSA-VDNEVRQLLAV--DG-RVH--LNFGITATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRLRDISLE 725 (793)
Q Consensus 652 Lasgs-~Dg~I~IwDl~--tg-~~~--~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~ 725 (793)
++.+. .++.|.+||+. +| ... ..+.........+..+++.++|. +.++...++.| .+||. +++.+. .+.
T Consensus 193 lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~-lwva~~~~~~v-~~~d~-~g~~~~--~i~ 267 (326)
T 2ghs_A 193 GYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGH-IWNARWGEGAV-DRYDT-DGNHIA--RYE 267 (326)
T ss_dssp EEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSC-EEEEEETTTEE-EEECT-TCCEEE--EEE
T ss_pred EEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCC-EEEEEeCCCEE-EEECC-CCCEEE--EEE
Confidence 76654 56899999986 66 321 12211111223456788888887 66665566788 99998 677766 332
Q ss_pred CCCCCccceeeeccCCccccCCccEEEEEEc-CCCC
Q 003822 726 GKGSGTSMFVQSLRGDPFRDFNMSILAAYTR-PSSK 760 (793)
Q Consensus 726 gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~-P~~~ 760 (793)
.+. ..+.+++|. |+..
T Consensus 268 ~~~-------------------~~~~~~af~g~d~~ 284 (326)
T 2ghs_A 268 VPG-------------------KQTTCPAFIGPDAS 284 (326)
T ss_dssp CSC-------------------SBEEEEEEESTTSC
T ss_pred CCC-------------------CCcEEEEEecCCCC
Confidence 221 247889998 7543
No 219
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.94 E-value=8.7e-08 Score=101.87 Aligned_cols=226 Identities=8% Similarity=0.018 Sum_probs=143.4
Q ss_pred eEEEEEeCCCCC-EEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCc
Q 003822 456 PRQFEYHPSISC-LMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS 534 (793)
Q Consensus 456 V~~vafsP~d~~-~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~ 534 (793)
+....|+| +++ +++++..++.|..|+. +++. ..+. .+...+..+++. ++|+++++...++.|.+|+.+ ++..
T Consensus 47 ~egp~~~~-~g~~l~~~d~~~~~i~~~~~-~g~~-~~~~--~~~~~~~gl~~d-~dG~l~v~~~~~~~v~~~~~~-g~~~ 119 (305)
T 3dr2_A 47 SEGPAWWE-AQRTLVWSDLVGRRVLGWRE-DGTV-DVLL--DATAFTNGNAVD-AQQRLVHCEHGRRAITRSDAD-GQAH 119 (305)
T ss_dssp EEEEEEEG-GGTEEEEEETTTTEEEEEET-TSCE-EEEE--ESCSCEEEEEEC-TTSCEEEEETTTTEEEEECTT-SCEE
T ss_pred ccCCeEeC-CCCEEEEEECCCCEEEEEeC-CCCE-EEEe--CCCCccceeeEC-CCCCEEEEECCCCEEEEECCC-CCEE
Confidence 67789999 666 7778888899999998 4553 3333 345678899986 688866665556789999875 3321
Q ss_pred ccccccCCceeEecCCCCeEEEEEccCCCEEEE----EEC-------------CCcEEEEECCCCcEEEEEcccCCCCeE
Q 003822 535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLA----SGY-------------SKNIALYDINSGRRLQVFADMHKEHIN 597 (793)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla----~g~-------------Dg~I~IWDl~tg~~l~~~~~gh~~~V~ 597 (793)
.+...... .....+.++++.+++..+++ +.. .+.|..||..+++..... .....+
T Consensus 120 --~~~~~~~~---~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~---~~~~p~ 191 (305)
T 3dr2_A 120 --LLVGRYAG---KRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA---DLDHPN 191 (305)
T ss_dssp --EEECEETT---EECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE---EESSEE
T ss_pred --EEEeccCC---CccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe---cCCCCc
Confidence 11100000 01134677889887776664 221 256888888766644332 224568
Q ss_pred EEEEcCCCCcEEEEEeCC------CeEEEEECCCCCcc--ceEEccCCCCeEEEEEecCCCEEEEEeCCCeEEEEEcCCC
Q 003822 598 VVKFSNHSPSIFATSSFD------QDVKLWDLRQKPIQ--PCYTASSSKGNVMVCFSPDDHYLLVSAVDNEVRQLLAVDG 669 (793)
Q Consensus 598 sv~fspdg~~~LaTgs~D------g~IrIWDlrt~~~~--~~~~l~~~~~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg 669 (793)
.++|+|++ +.|+.+... +.|.+||+...... ..+.......+-.++++++|+ |.+++.+ .|.+|+. ++
T Consensus 192 gl~~spdg-~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~-lwv~~~~-gv~~~~~-~g 267 (305)
T 3dr2_A 192 GLAFSPDE-QTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGW-LWSSSGT-GVCVFDS-DG 267 (305)
T ss_dssp EEEECTTS-SEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSC-EEECCSS-EEEEECT-TS
T ss_pred ceEEcCCC-CEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCC-EEEecCC-cEEEECC-CC
Confidence 89999999 656555554 78999998754211 111111111222488999999 5555544 5999997 67
Q ss_pred cEEEEEeeecCCCCCcEEEEEeeCCCeEEEEEeCCC
Q 003822 670 RVHLNFGITATGSSQNYTRSYYLNGRDYIVSGSCDE 705 (793)
Q Consensus 670 ~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg 705 (793)
+.+..+... ..+..++|.++++ .|..++.++
T Consensus 268 ~~~~~~~~~----~~~~~~~f~~d~~-~L~it~~~~ 298 (305)
T 3dr2_A 268 QLLGHIPTP----GTASNCTFDQAQQ-RLFITGGPC 298 (305)
T ss_dssp CEEEEEECS----SCCCEEEECTTSC-EEEEEETTE
T ss_pred CEEEEEECC----CceeEEEEeCCCC-EEEEEcCCe
Confidence 777776532 2477889998887 666666554
No 220
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.92 E-value=3.7e-07 Score=101.87 Aligned_cols=254 Identities=10% Similarity=0.076 Sum_probs=158.2
Q ss_pred CCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCC--cEEE
Q 003822 499 NSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSK--NIAL 576 (793)
Q Consensus 499 ~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg--~I~I 576 (793)
.....++|. ++++++++...++.|++||..++..... ........ ++|+++++.++++..++ .|.+
T Consensus 131 ~~P~~la~d-~~g~lyv~d~~~~~I~~id~~~g~~~~~----------~~~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~ 198 (409)
T 3hrp_A 131 KYMWGIAAV-GNNTVLAYQRDDPRVRLISVDDNKVTTV----------HPGFKGGK-PAVTKDKQRVYSIGWEGTHTVYV 198 (409)
T ss_dssp CCEEEEEEC-STTEEEEEETTTTEEEEEETTTTEEEEE----------EETCCBCB-CEECTTSSEEEEEBSSTTCEEEE
T ss_pred CCceEEEEe-CCCCEEEEecCCCcEEEEECCCCEEEEe----------eccCCCCc-eeEecCCCcEEEEecCCCceEEE
Confidence 367889997 6777777777779999999987543111 11112234 88988988888887654 7999
Q ss_pred EECCCCcEEEEE---cccCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEECCCCCccceEE--ccCCCC--eE-EEEEecC
Q 003822 577 YDINSGRRLQVF---ADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYT--ASSSKG--NV-MVCFSPD 648 (793)
Q Consensus 577 WDl~tg~~l~~~---~~gh~~~V~sv~fspdg~~~LaTgs~Dg~IrIWDlrt~~~~~~~~--l~~~~~--~v-sv~fSpd 648 (793)
||...+.....+ .......+.+++++|+++.+++ +..++.|+.||..++....... ..+... +. .++|+|+
T Consensus 199 ~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv-~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~ 277 (409)
T 3hrp_A 199 YMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYF-VDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFV 277 (409)
T ss_dssp EEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEE-ECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETT
T ss_pred EEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEE-EECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCC
Confidence 998876654444 1114466789999995435555 6778899999998764322211 111222 23 7999996
Q ss_pred -CCEEEEEeCCCeEEEEEcCCCcEEEEEeeec--CC----------CCCcEEEEEeeCCCeEEEEEe-CCCcEEEEEEcC
Q 003822 649 -DHYLLVSAVDNEVRQLLAVDGRVHLNFGITA--TG----------SSQNYTRSYYLNGRDYIVSGS-CDEHVVRICCAQ 714 (793)
Q Consensus 649 -g~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~--~~----------~~~v~s~afspdg~~~L~Sgs-~Dg~II~IWDv~ 714 (793)
+..+++-..++.|+.|+... .. ..+.... .+ -.....++++++|. ++++-+ .+++| +.|++.
T Consensus 278 ~g~lyv~d~~~~~I~~~~~~g-~~-~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~-lyvad~~~~~~I-~~~~~~ 353 (409)
T 3hrp_A 278 DSNFYMSDQNLSSVYKITPDG-EC-EWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGN-FYIVDGFKGYCL-RKLDIL 353 (409)
T ss_dssp TTEEEEEETTTTEEEEECTTC-CE-EEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCC-EEEEETTTTCEE-EEEETT
T ss_pred CCEEEEEeCCCCEEEEEecCC-CE-EEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCC-EEEEeCCCCCEE-EEEECC
Confidence 45445555678999998654 32 3332211 00 13477899999998 777777 77888 999988
Q ss_pred CCcEEEeeeecCCCCCccceeeeccCCccccCCccEEEEEEcCCCCceeeEeeEEEeCCCcEEEEcC
Q 003822 715 TGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKSEIVKVNLLASTDHCDKECSH 781 (793)
Q Consensus 715 tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~~~~iv~~~ltaS~Dg~VkvW~~ 781 (793)
+|+. . ++.|+... .-+. .+.+....-....+++++|+ ...++ .-+.++.|+.+.+
T Consensus 354 ~G~v-~--~~~g~~~~-~g~~---~g~~~~~~~~~P~giavd~~-g~lyV----ad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 354 DGYV-S--TVAGQVDV-ASQI---DGTPLEATFNYPYDICYDGE-GGYWI----AEAWGKAIRKYAV 408 (409)
T ss_dssp TTEE-E--EEEECTTC-BSCC---CBSTTTCCBSSEEEEEECSS-SEEEE----EESTTCEEEEEEE
T ss_pred CCEE-E--EEeCCCCC-CCcC---CCChhceEeCCceEEEEcCC-CCEEE----EECCCCeEEEEEe
Confidence 8864 3 55554210 0011 11111111135789999996 33333 4456777776653
No 221
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.91 E-value=1e-06 Score=96.10 Aligned_cols=231 Identities=9% Similarity=0.048 Sum_probs=147.3
Q ss_pred CCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcccccccCCcee
Q 003822 466 SCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTV 545 (793)
Q Consensus 466 ~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~~~~~~~~~~~ 545 (793)
+..+++++.++.|..+|..+|+........+.. ...... .+..++.++.++.|..+|..+++.......... ..
T Consensus 103 ~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~--~~~p~~---~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~-~~ 176 (376)
T 3q7m_A 103 GGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEA--LSRPVV---SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMP-SL 176 (376)
T ss_dssp TTEEEEEETTSEEEEEETTTCCEEEEEECSSCC--CSCCEE---ETTEEEEECTTSEEEEEETTTCCEEEEEECCC----
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEEEEeCCCce--EcCCEE---ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCC-ce
Confidence 467888999999999999999988776643211 111121 245788888999999999998876433221110 00
Q ss_pred EecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCC---------e-EEEEEcCCCCcEEEEEeCC
Q 003822 546 TFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEH---------I-NVVKFSNHSPSIFATSSFD 615 (793)
Q Consensus 546 ~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~---------V-~sv~fspdg~~~LaTgs~D 615 (793)
.... ...... .++.+++++.++.+..+|..+|+.+.......... + ..... .+ ..++.++.+
T Consensus 177 ~~~~---~~~~~~--~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~--~~-~~v~~~~~~ 248 (376)
T 3q7m_A 177 SLRG---ESAPTT--AFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVV--VN-GVVFALAYN 248 (376)
T ss_dssp --CC---CCCCEE--ETTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEE--ET-TEEEEECTT
T ss_pred eecC---CCCcEE--ECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEE--EC-CEEEEEecC
Confidence 0000 011111 25678888889999999999999988776211100 1 01111 12 467778889
Q ss_pred CeEEEEECCCCCccceEEccCCCCeEEEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCCC
Q 003822 616 QDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNGR 695 (793)
Q Consensus 616 g~IrIWDlrt~~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg~ 695 (793)
+.+..+|.++++.. ...... ....+.. ++..+++++.++.+..+|..+|+.+..... ........... .+.
T Consensus 249 g~l~~~d~~tG~~~--w~~~~~-~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~--~~~~~~~~~~~--~~~ 319 (376)
T 3q7m_A 249 GNLTALDLRSGQIM--WKRELG-SVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSD--LLHRLLTSPVL--YNG 319 (376)
T ss_dssp SCEEEEETTTCCEE--EEECCC-CEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECT--TTTSCCCCCEE--ETT
T ss_pred cEEEEEECCCCcEE--eeccCC-CCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecc--cCCCcccCCEE--ECC
Confidence 99999999988533 333321 2223333 467788888899999999999998665531 11111111222 234
Q ss_pred eEEEEEeCCCcEEEEEEcCCCcEEEe
Q 003822 696 DYIVSGSCDEHVVRICCAQTGRRLRD 721 (793)
Q Consensus 696 ~~L~Sgs~Dg~II~IWDv~tg~~l~~ 721 (793)
.|+.++.+|.+ .++|..+|+.+..
T Consensus 320 -~l~v~~~~g~l-~~~d~~tG~~~~~ 343 (376)
T 3q7m_A 320 -NLVVGDSEGYL-HWINVEDGRFVAQ 343 (376)
T ss_dssp -EEEEECTTSEE-EEEETTTCCEEEE
T ss_pred -EEEEEeCCCeE-EEEECCCCcEEEE
Confidence 78889999999 9999999999883
No 222
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.90 E-value=2.6e-07 Score=110.07 Aligned_cols=200 Identities=9% Similarity=0.092 Sum_probs=129.0
Q ss_pred CCEEEEEeCCCeEEEEECCCCeEEEEEeccCCC--------CCE-EEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCccc
Q 003822 466 SCLMVFGTLDGEIVVVNHENENIVSYIPSFGAM--------NSV-LGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIR 536 (793)
Q Consensus 466 ~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~--------~~V-~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~~ 536 (793)
+..+++++.++.|.-+|..+|+.+......... ..+ ..+.. .+..+++++.|+.|..+|..+++....
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~v~v~~~dg~l~AlDa~TG~~~W~ 146 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV---WKGKVYVGVLDGRLEAIDAKTGQRAWS 146 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE---ETTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE---ECCEEEEEccCCEEEEEECCCCCEeee
Confidence 457888888999999999999998877532110 001 11222 356888899999999999999887544
Q ss_pred cccc-CCceeEecCC-CCeEEEEEccCCCEEEEEE------CCCcEEEEECCCCcEEEEEcccC-C--------------
Q 003822 537 GMHY-GAGTVTFDEF-DQLTSVHVNSMDELFLASG------YSKNIALYDINSGRRLQVFADMH-K-------------- 593 (793)
Q Consensus 537 ~~~~-~~~~~~~~~~-~~V~sv~~s~~~~~lla~g------~Dg~I~IWDl~tg~~l~~~~~gh-~-------------- 593 (793)
.... .... .+... .++ + .++.+++++ .+|.|+.||..+|+.+..+.... .
T Consensus 147 ~~~~~~~~~-~~~~~~sP~----v--~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~ 219 (689)
T 1yiq_A 147 VDTRADHKR-SYTITGAPR----V--VNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAA 219 (689)
T ss_dssp EECCSCTTS-CCBCCSCCE----E--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHH
T ss_pred ecCcCCCCC-CccccCCcE----E--ECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccc
Confidence 3221 1000 00000 111 1 255666654 26899999999999998875210 0
Q ss_pred ---------------CCeEEEEEcCCCCcEEEEEeCCCe-------------------EEEEECCCCCccceEEccCCC-
Q 003822 594 ---------------EHINVVKFSNHSPSIFATSSFDQD-------------------VKLWDLRQKPIQPCYTASSSK- 638 (793)
Q Consensus 594 ---------------~~V~sv~fspdg~~~LaTgs~Dg~-------------------IrIWDlrt~~~~~~~~l~~~~- 638 (793)
.....++++|++ .+++.++.++. |..||.++++..-.+....+.
T Consensus 220 ~~~~g~~w~~~~~g~~~w~~~~~d~~~-~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~ 298 (689)
T 1yiq_A 220 KTWFGDAYVEQGGGGTAWDSFAYDPEL-NLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDA 298 (689)
T ss_dssp TTCCSSTHHHHCEECCCCSCEEEETTT-TEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCC
T ss_pred cccCCceeeecCCCCccccceeEcCCC-CEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCccc
Confidence 011257888887 67888887764 999999998654434433221
Q ss_pred -------CeEEEEEecCCC---EEEEEeCCCeEEEEEcCCCcEEEEEe
Q 003822 639 -------GNVMVCFSPDDH---YLLVSAVDNEVRQLLAVDGRVHLNFG 676 (793)
Q Consensus 639 -------~~vsv~fSpdg~---~Lasgs~Dg~I~IwDl~tg~~~~~l~ 676 (793)
..+......+|+ .++.++.+|.++++|..+|+.+....
T Consensus 299 wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~ 346 (689)
T 1yiq_A 299 WDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKG 346 (689)
T ss_dssp SCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEE
T ss_pred ccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEecccc
Confidence 122223334665 78899999999999999999875543
No 223
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.90 E-value=6.6e-07 Score=97.64 Aligned_cols=228 Identities=11% Similarity=0.023 Sum_probs=147.5
Q ss_pred CCEEEEEeCCCeEEEEECCCCeEEEEEeccCC-------CCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCccccc
Q 003822 466 SCLMVFGTLDGEIVVVNHENENIVSYIPSFGA-------MNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGM 538 (793)
Q Consensus 466 ~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h-------~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~~~~ 538 (793)
+..+++++.++.|..+|..+|+.+........ ...+.+.-. ..+..+++++.++.|..+|..+++......
T Consensus 53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~ 130 (376)
T 3q7m_A 53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVT--VSGGHVYIGSEKAQVYALNTSDGTVAWQTK 130 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEE--EETTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred CCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCce--EeCCEEEEEcCCCEEEEEECCCCCEEEEEe
Confidence 46788888899999999999998877664221 223332221 245688889999999999999887643322
Q ss_pred ccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCCe------EEEEEcCCCCcEEEEE
Q 003822 539 HYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHI------NVVKFSNHSPSIFATS 612 (793)
Q Consensus 539 ~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V------~sv~fspdg~~~LaTg 612 (793)
.... . ...+ .+ .++.+++++.++.|..+|..+|+.+..+.. . ..+ ...... + ..++.+
T Consensus 131 ~~~~--~---~~~p----~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~-~-~~~~~~~~~~~~~~~-~--~~v~~g 194 (376)
T 3q7m_A 131 VAGE--A---LSRP----VV--SDGLVLIHTSNGQLQALNEADGAVKWTVNL-D-MPSLSLRGESAPTTA-F--GAAVVG 194 (376)
T ss_dssp CSSC--C---CSCC----EE--ETTEEEEECTTSEEEEEETTTCCEEEEEEC-C-C-----CCCCCCEEE-T--TEEEEC
T ss_pred CCCc--e---EcCC----EE--ECCEEEEEcCCCeEEEEECCCCcEEEEEeC-C-CCceeecCCCCcEEE-C--CEEEEE
Confidence 1100 0 0011 11 367888888899999999999999888762 2 111 112222 3 367778
Q ss_pred eCCCeEEEEECCCCCccceEEccCCCCeE------EEEEec--CCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCC
Q 003822 613 SFDQDVKLWDLRQKPIQPCYTASSSKGNV------MVCFSP--DDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQ 684 (793)
Q Consensus 613 s~Dg~IrIWDlrt~~~~~~~~l~~~~~~v------sv~fSp--dg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~ 684 (793)
+.++.+..+|.++++..-........... .+.-.| .+..+++++.++.+..+|..+|+.+..... ..
T Consensus 195 ~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~-----~~ 269 (376)
T 3q7m_A 195 GDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKREL-----GS 269 (376)
T ss_dssp CTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECC-----CC
T ss_pred cCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccC-----CC
Confidence 88999999999988543333322111100 000111 356788888899999999999998766532 11
Q ss_pred cEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEE
Q 003822 685 NYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRLR 720 (793)
Q Consensus 685 v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~ 720 (793)
..... .++. .++.++.++.+ ..+|..+|+.+.
T Consensus 270 ~~~~~--~~~~-~l~~~~~~g~l-~~~d~~tG~~~w 301 (376)
T 3q7m_A 270 VNDFI--VDGN-RIYLVDQNDRV-MALTIDGGVTLW 301 (376)
T ss_dssp EEEEE--EETT-EEEEEETTCCE-EEEETTTCCEEE
T ss_pred CCCce--EECC-EEEEEcCCCeE-EEEECCCCcEEE
Confidence 22222 2344 68888889999 999999999987
No 224
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.89 E-value=3.2e-07 Score=97.41 Aligned_cols=232 Identities=14% Similarity=0.071 Sum_probs=143.1
Q ss_pred CCCCEEEEEEeeCCCC-EEEEEEcCCcEEEEEcCCCCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEE
Q 003822 497 AMNSVLGLCWLKKYPS-KLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIA 575 (793)
Q Consensus 497 h~~~V~sv~fs~~~g~-~Lasgs~DgtV~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~ 575 (793)
......+..|. ++++ +++++..++.|..|+.. +.. . ........+.++++.+++..+++...++.|.
T Consensus 43 ~~~~~egp~~~-~~g~~l~~~d~~~~~i~~~~~~-g~~--~--------~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~ 110 (305)
T 3dr2_A 43 QATWSEGPAWW-EAQRTLVWSDLVGRRVLGWRED-GTV--D--------VLLDATAFTNGNAVDAQQRLVHCEHGRRAIT 110 (305)
T ss_dssp CCSSEEEEEEE-GGGTEEEEEETTTTEEEEEETT-SCE--E--------EEEESCSCEEEEEECTTSCEEEEETTTTEEE
T ss_pred CCcCccCCeEe-CCCCEEEEEECCCCEEEEEeCC-CCE--E--------EEeCCCCccceeeECCCCCEEEEECCCCEEE
Confidence 34567788998 5776 66777778999999873 322 1 1112234578999988776444433568899
Q ss_pred EEECCCCcEEEEEc---ccCCCCeEEEEEcCCCCcEEEE----EeC-------------CCeEEEEECCCCCccceEEcc
Q 003822 576 LYDINSGRRLQVFA---DMHKEHINVVKFSNHSPSIFAT----SSF-------------DQDVKLWDLRQKPIQPCYTAS 635 (793)
Q Consensus 576 IWDl~tg~~l~~~~---~gh~~~V~sv~fspdg~~~LaT----gs~-------------Dg~IrIWDlrt~~~~~~~~l~ 635 (793)
+||.. ++...... ......++.+++.|+| .+++| |.. .+.|..||..+++...+.
T Consensus 111 ~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG-~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--- 185 (305)
T 3dr2_A 111 RSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDG-AIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--- 185 (305)
T ss_dssp EECTT-SCEEEEECEETTEECSCCCCEEECTTS-CEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE---
T ss_pred EECCC-CCEEEEEeccCCCccCCCCCEEECCCC-CEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe---
Confidence 99986 55332221 1112356789999999 77776 332 256888887666544332
Q ss_pred CCCCeEEEEEecCCCEEEEEeCC------CeEEEEEcCCCcEEEEEee-ecCCCCCcEEEEEeeCCCeEEEEEeCCCcEE
Q 003822 636 SSKGNVMVCFSPDDHYLLVSAVD------NEVRQLLAVDGRVHLNFGI-TATGSSQNYTRSYYLNGRDYIVSGSCDEHVV 708 (793)
Q Consensus 636 ~~~~~vsv~fSpdg~~Lasgs~D------g~I~IwDl~tg~~~~~l~~-~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II 708 (793)
....+..++|+|+|+.|+++... +.|.+|++..+. +..... ..........+++.++|. |.+++.+ .|
T Consensus 186 ~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~~~~~pdgi~~d~~G~--lwv~~~~-gv- 260 (305)
T 3dr2_A 186 DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFASVPDGLPDGFCVDRGGW--LWSSSGT-GV- 260 (305)
T ss_dssp EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEECCSSSCCCSEEECTTSC--EEECCSS-EE-
T ss_pred cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEECCCCCCCeEEECCCCC--EEEecCC-cE-
Confidence 22345569999999988888765 789999987654 221111 111223345678889997 3334444 47
Q ss_pred EEEEcCCCcEEEeeeecCCCCCccceeeeccCCccccCCccEEEEEEcCCCCceeeEeeEEEeCCCcEEE
Q 003822 709 RICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKSEIVKVNLLASTDHCDKE 778 (793)
Q Consensus 709 ~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~~~~iv~~~ltaS~Dg~Vkv 778 (793)
.+|+. .|+.+. .+..+. .+.+++|.|+ ...++ +++.++..++
T Consensus 261 ~~~~~-~g~~~~--~~~~~~--------------------~~~~~~f~~d-~~~L~----it~~~~l~~~ 302 (305)
T 3dr2_A 261 CVFDS-DGQLLG--HIPTPG--------------------TASNCTFDQA-QQRLF----ITGGPCLWML 302 (305)
T ss_dssp EEECT-TSCEEE--EEECSS--------------------CCCEEEECTT-SCEEE----EEETTEEEEE
T ss_pred EEECC-CCCEEE--EEECCC--------------------ceeEEEEeCC-CCEEE----EEcCCeEEEE
Confidence 99998 577776 332221 2567888875 33444 5666654444
No 225
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.89 E-value=2.2e-07 Score=110.50 Aligned_cols=202 Identities=10% Similarity=0.071 Sum_probs=132.7
Q ss_pred CCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCC---------CEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCccc
Q 003822 466 SCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMN---------SVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIR 536 (793)
Q Consensus 466 ~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~---------~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~~ 536 (793)
+..+++++.++.|.-+|..+|+.+.......... ....+++ .+..+++++.|+.|..+|..+++....
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~---~~~~v~v~~~dg~l~alD~~tG~~~W~ 153 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL---WKGKVYVGAWDGRLIALDAATGKEVWH 153 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE---ETTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE---ECCEEEEEcCCCEEEEEECCCCCEEee
Confidence 4577778888999999999999988776432110 0112332 356888889999999999999887544
Q ss_pred ccccCCceeEecCCCCeEE-EEEccCCCEEEEEEC------CCcEEEEECCCCcEEEEEcccCCC---------------
Q 003822 537 GMHYGAGTVTFDEFDQLTS-VHVNSMDELFLASGY------SKNIALYDINSGRRLQVFADMHKE--------------- 594 (793)
Q Consensus 537 ~~~~~~~~~~~~~~~~V~s-v~~s~~~~~lla~g~------Dg~I~IWDl~tg~~l~~~~~gh~~--------------- 594 (793)
......... ...+.+ ..+ .++.+++++. ++.|+.||..+|+.+.++......
T Consensus 154 ~~~~~~~~~----~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~ 227 (677)
T 1kb0_A 154 QNTFEGQKG----SLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAAR 227 (677)
T ss_dssp EETTTTCCS----SCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHT
T ss_pred ecCCcCcCc----CcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccc
Confidence 322100000 000110 011 2566666653 689999999999999888631110
Q ss_pred ----------------CeEEEEEcCCCCcEEEEEeCCC-------------------eEEEEECCCCCccceEEccCC--
Q 003822 595 ----------------HINVVKFSNHSPSIFATSSFDQ-------------------DVKLWDLRQKPIQPCYTASSS-- 637 (793)
Q Consensus 595 ----------------~V~sv~fspdg~~~LaTgs~Dg-------------------~IrIWDlrt~~~~~~~~l~~~-- 637 (793)
....++++|++ .+++.++.++ .|..+|.++++..-.+....+
T Consensus 228 ~w~~~g~~~~~~~g~~~w~~~~~d~~~-~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~ 306 (677)
T 1kb0_A 228 TWDPSGKWWEAGGGGTMWDSMTFDAEL-NTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDN 306 (677)
T ss_dssp TSCGGGCHHHHCEECCCCSCEEEETTT-TEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCC
T ss_pred cccccCceeEeCCCcccccceeEcCCC-CEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcc
Confidence 01257888887 6777776654 599999999865444443333
Q ss_pred ------CCeEEEEEecCC---CEEEEEeCCCeEEEEEcCCCcEEEEEee
Q 003822 638 ------KGNVMVCFSPDD---HYLLVSAVDNEVRQLLAVDGRVHLNFGI 677 (793)
Q Consensus 638 ------~~~vsv~fSpdg---~~Lasgs~Dg~I~IwDl~tg~~~~~l~~ 677 (793)
..++.+....+| +.+++++.+|.++++|..+|+.+..+..
T Consensus 307 wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~ 355 (677)
T 1kb0_A 307 WDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNF 355 (677)
T ss_dssp SCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEES
T ss_pred cccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccc
Confidence 123334455578 6899999999999999999999877653
No 226
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.89 E-value=2.2e-07 Score=110.79 Aligned_cols=205 Identities=12% Similarity=0.078 Sum_probs=127.2
Q ss_pred CCCCCEEEEEEeeCCCCEEEEEE-----cCCcEEEEEcCCCCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEEC
Q 003822 496 GAMNSVLGLCWLKKYPSKLIAGS-----DNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY 570 (793)
Q Consensus 496 ~h~~~V~sv~fs~~~g~~Lasgs-----~DgtV~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~ 570 (793)
+|...+.+++|+ ++|+++|.+. ...+|++||+.+++....... . .....++|+ ++..++.+..
T Consensus 126 ~~~~~l~~~~~S-pDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~-------~---~k~~~~~Ws-Dg~~l~y~~~ 193 (693)
T 3iuj_A 126 DGTTALDQLSFS-RDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLK-------D---VKFSGISWL-GNEGFFYSSY 193 (693)
T ss_dssp TSCCEEEEEEEC-TTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEE-------E---EESCCCEEE-TTTEEEEEES
T ss_pred CCcEEEEEEEEC-CCCCEEEEEEecCCCceEEEEEEECCCCCCCccccC-------C---ceeccEEEe-CCCEEEEEEe
Confidence 455678889997 7999887432 235799999999764211100 0 012467898 8888888886
Q ss_pred CC-------------cEEEEECCCCcE--EEEEcc-c-CCCCeEEEEEcCCCCcEEEEEeC---CCeEEEEECCCCCccc
Q 003822 571 SK-------------NIALYDINSGRR--LQVFAD-M-HKEHINVVKFSNHSPSIFATSSF---DQDVKLWDLRQKPIQP 630 (793)
Q Consensus 571 Dg-------------~I~IWDl~tg~~--l~~~~~-g-h~~~V~sv~fspdg~~~LaTgs~---Dg~IrIWDlrt~~~~~ 630 (793)
+. .|++|++.++.. ...+.. . |...+..+.|+|+|..++++.+. ++.|++||+.++....
T Consensus 194 ~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~ 273 (693)
T 3iuj_A 194 DKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPL 273 (693)
T ss_dssp SCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCC
T ss_pred cCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCce
Confidence 63 399999987653 333332 2 44567889999999444444443 2579999998763222
Q ss_pred eEEccCCCCeEEEEEecCCCEEEEEeC----CCeEEEEEcCCCcE--EEEEeeecCCCCCcEEEEEeeCCCeEEEEEeCC
Q 003822 631 CYTASSSKGNVMVCFSPDDHYLLVSAV----DNEVRQLLAVDGRV--HLNFGITATGSSQNYTRSYYLNGRDYIVSGSCD 704 (793)
Q Consensus 631 ~~~l~~~~~~vsv~fSpdg~~Lasgs~----Dg~I~IwDl~tg~~--~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~D 704 (793)
. .+..+.....-.|+++|..|+..+. .+.|..+|+.++.. ...+. .+...+. .|+++++.++++...+
T Consensus 274 ~-~l~~~~~~~~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~---~~~~~~~--~~s~~g~~lv~~~~~~ 347 (693)
T 3iuj_A 274 L-TVQGDLDADVSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLI---PERQQVL--TVHSGSGYLFAEYMVD 347 (693)
T ss_dssp E-EEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEE---CCCSSCE--EEEEETTEEEEEEEET
T ss_pred E-EEeCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEe---cCCCCEE--EEEEECCEEEEEEEEC
Confidence 2 2222222222237777777766553 26799999987653 22332 2333344 8999998455555556
Q ss_pred C--cEEEEEEcCCCcEEE
Q 003822 705 E--HVVRICCAQTGRRLR 720 (793)
Q Consensus 705 g--~II~IWDv~tg~~l~ 720 (793)
+ .+ ++|++..+ ...
T Consensus 348 g~~~l-~~~d~~g~-~~~ 363 (693)
T 3iuj_A 348 ATARV-EQFDYEGK-RVR 363 (693)
T ss_dssp TEEEE-EEECTTSC-EEE
T ss_pred CeeEE-EEEECCCC-eeE
Confidence 5 56 89988744 444
No 227
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.87 E-value=8.8e-08 Score=105.36 Aligned_cols=242 Identities=11% Similarity=-0.041 Sum_probs=148.7
Q ss_pred EEEEEeCCC----eEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEE----------cCCcEEEEEcCCCCC
Q 003822 468 LMVFGTLDG----EIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGS----------DNGSLKLYDIRHMPP 533 (793)
Q Consensus 468 ~Lasgs~DG----~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs----------~DgtV~vWDl~~~~~ 533 (793)
.+++-..++ +|.++|..+++.+..+.. +. .+ .+.++ +++++++++. .+++|.+||..+.+.
T Consensus 34 ~yV~~~~~~~~~d~vsvID~~t~~v~~~i~v-G~-~P--~i~~s-pDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~v 108 (368)
T 1mda_H 34 SHITLPAYFAGTTENWVSCAGCGVTLGHSLG-AF-LS--LAVAG-HSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLP 108 (368)
T ss_dssp EEEEECTTTCSSEEEEEEETTTTEEEEEEEE-CT-TC--EEEEC-TTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCE
T ss_pred EEEECCccCCccceEEEEECCCCeEEEEEeC-CC-CC--ceEEC-CCCCEEEEEcccccccccCCCCCEEEEEECCCCCE
Confidence 344444444 889999999999999885 33 34 68887 7888887776 368999999999775
Q ss_pred cccccccCCceeEecCCCCeEEEEEccCCCEEEEEEC--CCcEEE--EECCCCcEEEEEcccC-----------------
Q 003822 534 SIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY--SKNIAL--YDINSGRRLQVFADMH----------------- 592 (793)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~--Dg~I~I--WDl~tg~~l~~~~~gh----------------- 592 (793)
......+... .+........+.++|++.+++++.. +..|.+ +|+.+ +.++.-+.
T Consensus 109 v~~I~v~~~~--~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~~~~~p~g~~~~~~~~~ 183 (368)
T 1mda_H 109 IADIELPDAP--RFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASCFHIHPGAAATHYLGSC 183 (368)
T ss_dssp EEEEEETTSC--SCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSCCCCEEEETTEEECCCC
T ss_pred EEEEECCCcc--ccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCceEEccCCCeEEEEEcC
Confidence 2221110000 0000123567889999999888874 467888 88876 33332100
Q ss_pred CCCeEEEEE--------------------------cCCCCcEEEEEeCCCeEEEEECCCCCccceEEccCC------CCe
Q 003822 593 KEHINVVKF--------------------------SNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSS------KGN 640 (793)
Q Consensus 593 ~~~V~sv~f--------------------------spdg~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~------~~~ 640 (793)
.+.+..+.. .+++ ..++..+. +.|.+.|..+.....+..+... .+.
T Consensus 184 dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~~~~~~-~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~ 261 (368)
T 1mda_H 184 PASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYP-GMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNF 261 (368)
T ss_dssp TTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTT-TEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTE
T ss_pred CCCEEEEECccccccCCeEEEEeeeeeeCCCCccccccC-CEEEEEcC-CEEEEEECCCCcceEEEEEEecccccccccc
Confidence 000000100 2222 12222222 5566666644221111111000 011
Q ss_pred E-----EEEEecCCCEEEEEeC---------CCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCCCeEEEEEe-CCC
Q 003822 641 V-----MVCFSPDDHYLLVSAV---------DNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNGRDYIVSGS-CDE 705 (793)
Q Consensus 641 v-----sv~fSpdg~~Lasgs~---------Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs-~Dg 705 (793)
. .++++|+|+.++++.. ++.+.++|+.+++.+.++... .....++|+|||+..+++.. .++
T Consensus 262 ~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg----~~p~gi~~s~Dg~~l~va~~~~~~ 337 (368)
T 1mda_H 262 RSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNG----HDSDAIIAAQDGASDNYANSAGTE 337 (368)
T ss_dssp EECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEE----EEECEEEECCSSSCEEEEEETTTT
T ss_pred ccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECC----CCcceEEECCCCCEEEEEccCCCC
Confidence 1 1689999999987643 235679999999998877642 24778999999986677777 589
Q ss_pred cEEEEEEcCCCcEEEeeeecCCC
Q 003822 706 HVVRICCAQTGRRLRDISLEGKG 728 (793)
Q Consensus 706 ~II~IWDv~tg~~l~~~~L~gh~ 728 (793)
.| .++|+.+++.++ ++....
T Consensus 338 ~V-sVID~~t~kvv~--~I~vg~ 357 (368)
T 1mda_H 338 VL-DIYDAASDQDQS--SVELDK 357 (368)
T ss_dssp EE-EEEESSSCEEEE--ECCCCS
T ss_pred eE-EEEECCCCcEEE--EEECCC
Confidence 99 999999999999 665443
No 228
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.81 E-value=3.6e-09 Score=116.43 Aligned_cols=190 Identities=15% Similarity=0.104 Sum_probs=107.0
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcccccccCCce
Q 003822 465 ISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGT 544 (793)
Q Consensus 465 d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~~~~~~~~~~ 544 (793)
++..+++|+.||.|+.||..+|+.+..+.. +.+.+..+. .++..+++++.||.|+.||..+++............
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~----~~~~s~p~~-~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~ 82 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE----DPVLQVPTH-VEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPEL 82 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC----CCSCCCC------CCEEECTTTCCEEEC-----CCSEECSCCHHHH
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC----CCceecceE-cCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccc
Confidence 567899999999999999999999888764 334443333 456677888899999999998876533211100000
Q ss_pred eEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEECC
Q 003822 545 VTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLR 624 (793)
Q Consensus 545 ~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~Dg~IrIWDlr 624 (793)
. ...++. ..++.+++++.++.|+.||..+|+.+..+.. +. ...++|++ ..+++++.|+.|+.||.+
T Consensus 83 ~---~~sp~~-----~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~-~~----~~~~~p~~-~~v~~~~~dg~v~a~d~~ 148 (369)
T 2hz6_A 83 V---QASPCR-----SSDGILYMGKKQDIWYVIDLLTGEKQQTLSS-AF----ADSLSPST-SLLYLGRTEYTITMYDTK 148 (369)
T ss_dssp H---TTCSCC----------CCCCEEEEEEEEECCC----------------------------EEEEEEEEEEECCCSS
T ss_pred c---ccCceE-----ecCCEEEEEeCCCEEEEEECCCCcEEEEecC-CC----cccccccC-CEEEEEecCCEEEEEECC
Confidence 0 011111 1456777777899999999999999888873 32 23456766 688889999999999999
Q ss_pred CCCccceEEccCCCCeEEEEEecCC---CEEEEEeCCCeEEEEEcCCCcEEEEEe
Q 003822 625 QKPIQPCYTASSSKGNVMVCFSPDD---HYLLVSAVDNEVRQLLAVDGRVHLNFG 676 (793)
Q Consensus 625 t~~~~~~~~l~~~~~~vsv~fSpdg---~~Lasgs~Dg~I~IwDl~tg~~~~~l~ 676 (793)
+++..-.+..... ....+++++ ..+++++.||.++.||..+|+.+.++.
T Consensus 149 tG~~~W~~~~~~~---~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~ 200 (369)
T 2hz6_A 149 TRELRWNATYFDY---AASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN 200 (369)
T ss_dssp SSSCCCEEEEEEE---CCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE
T ss_pred CCCEEEeEecccc---cCccccCCccccceEEEECCCCEEEEEECCCCcEEEEec
Confidence 8854433322111 112334432 567788899999999999999877765
No 229
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.80 E-value=2.3e-07 Score=100.56 Aligned_cols=241 Identities=11% Similarity=0.059 Sum_probs=148.1
Q ss_pred eEEEEEeCCCCCEEEEEe--CCCeEEEEECCCCeEEEEEe-----ccCCCCCEEEEEEeeCCCCEEEEEEc-----CCcE
Q 003822 456 PRQFEYHPSISCLMVFGT--LDGEIVVVNHENENIVSYIP-----SFGAMNSVLGLCWLKKYPSKLIAGSD-----NGSL 523 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs--~DG~I~VWd~~t~~~i~~l~-----~~~h~~~V~sv~fs~~~g~~Lasgs~-----DgtV 523 (793)
+..++++| +++++++.. .++.++||.+.+++.. .++ ..+|-..+.++++. ++++++++-.. ++.|
T Consensus 19 p~~va~~~-~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d-~~g~L~v~D~g~~~~~~~~i 95 (343)
T 2qe8_A 19 PGNITLTP-DGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSD-GNGIVWMLDNGNQSKSVPKL 95 (343)
T ss_dssp EEEEEECT-TSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEEC-SSSEEEEEECHHHHTSCCEE
T ss_pred cceEEECC-CCCEEEEeCCCCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEEEc-CCCcEEEEcCCCCcCCCCeE
Confidence 88999999 888888864 2343555555455533 222 11345689999986 56665555433 5789
Q ss_pred EEEEcCCCCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEE----CCCcEEEEECCCCcEEEEEcccCC------
Q 003822 524 KLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASG----YSKNIALYDINSGRRLQVFADMHK------ 593 (793)
Q Consensus 524 ~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g----~Dg~I~IWDl~tg~~l~~~~~gh~------ 593 (793)
.+||+.+++.... ....... ..+...+..+++.+.++.++++. .++.|.+||+.+++..+.+. +|.
T Consensus 96 ~~~d~~tg~~~~~-~~~~~~~--~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~-~~~~~~~~~ 171 (343)
T 2qe8_A 96 VAWDTLNNQLSRV-IYLPPPI--TLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQ-GYPGIAPED 171 (343)
T ss_dssp EEEETTTTEEEEE-EECCTTT--SCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECT-TCTTTSCCS
T ss_pred EEEECCCCeEEEE-EECChhh--cccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEec-CCCcccccc
Confidence 9999987653111 1100000 01223568899987777665554 46899999999888766553 221
Q ss_pred -----------------------CCeEEEEEcCCCCcEEEEEeCCC-eEEEEECC---CCCc--c---ceEEccCCC-Ce
Q 003822 594 -----------------------EHINVVKFSNHSPSIFATSSFDQ-DVKLWDLR---QKPI--Q---PCYTASSSK-GN 640 (793)
Q Consensus 594 -----------------------~~V~sv~fspdg~~~LaTgs~Dg-~IrIWDlr---t~~~--~---~~~~l~~~~-~~ 640 (793)
..++.++|+|++ +.|+.+..++ .+..++.. .+.. . ..+...++. .+
T Consensus 172 ~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg-~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~p 250 (343)
T 2qe8_A 172 IDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAEN-EWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPIC 250 (343)
T ss_dssp CCCEETTEECBEECTTSCEECCCCCEEEEEECTTS-CEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSC
T ss_pred cceeECCEEEEeccCCCceeceecccceeEeccCC-CEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCC
Confidence 236889999999 6677666655 45555432 1100 0 000110111 22
Q ss_pred EEEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCCCeEEEEEeCCCcE
Q 003822 641 VMVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNGRDYIVSGSCDEHV 707 (793)
Q Consensus 641 vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~I 707 (793)
..++++++|...++...++.|.+||..+|+...... . .....+..+++.++|. ++++.+..+.+
T Consensus 251 dgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~-~-~~~~~p~~va~~~~g~-l~v~~~~~~~~ 314 (343)
T 2qe8_A 251 DGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVT-D-EKLSWTDSFNFGSDGY-LYFDCNQLHHS 314 (343)
T ss_dssp SCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEE-C-GGGSCEEEEEECTTSC-EEEEECCGGGS
T ss_pred ceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEE-C-CceecCCeeEECCCCc-EEEEeCccccc
Confidence 348999999988888889999999986676433222 1 1234577889988887 66665544444
No 230
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.75 E-value=1.7e-09 Score=119.06 Aligned_cols=188 Identities=14% Similarity=0.008 Sum_probs=105.8
Q ss_pred CCCEEEEEEcCCcEEEEEcCCCCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEc
Q 003822 510 YPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFA 589 (793)
Q Consensus 510 ~g~~Lasgs~DgtV~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~ 589 (793)
++..+++++.||.|+.||..+++....... ..+.+..+..++..+++++.||.|+.||..+|+.+..+.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-----------~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~ 76 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE-----------DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLP 76 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC-----------CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECS
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC-----------CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeee
Confidence 567899999999999999999876443221 122222232445566666789999999999998877765
Q ss_pred ccCCC-CeE-EEEEcCCCCcEEEEEeCCCeEEEEECCCCCccceEEccCCCCeEEEEEecCCCEEEEEeCCCeEEEEEcC
Q 003822 590 DMHKE-HIN-VVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLVSAVDNEVRQLLAV 667 (793)
Q Consensus 590 ~gh~~-~V~-sv~fspdg~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~ 667 (793)
. +.. .+. +..+. .+ ..+++|+.|+.|+.||.++++.. .....+. ...++|++..+++++.|+.|+.||..
T Consensus 77 ~-~~~~~~~~sp~~~-~~-~~v~~g~~dg~v~a~D~~tG~~~--w~~~~~~---~~~~~p~~~~v~~~~~dg~v~a~d~~ 148 (369)
T 2hz6_A 77 F-TIPELVQASPCRS-SD-GILYMGKKQDIWYVIDLLTGEKQ--QTLSSAF---ADSLSPSTSLLYLGRTEYTITMYDTK 148 (369)
T ss_dssp C-CHHHHHTTCSCC-------CCCCEEEEEEEEECCC---------------------------EEEEEEEEEEECCCSS
T ss_pred c-cCccccccCceEe-cC-CEEEEEeCCCEEEEEECCCCcEE--EEecCCC---cccccccCCEEEEEecCCEEEEEECC
Confidence 2 211 110 00111 23 46778888999999999998543 3333222 24567788999999999999999999
Q ss_pred CCcEEEEEeeecCCCCCcEEEEEeeCC---CeEEEEEeCCCcEEEEEEcCCCcEEEeee
Q 003822 668 DGRVHLNFGITATGSSQNYTRSYYLNG---RDYIVSGSCDEHVVRICCAQTGRRLRDIS 723 (793)
Q Consensus 668 tg~~~~~l~~~~~~~~~v~s~afspdg---~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~ 723 (793)
+|+.+..+..... ...++..+. . .+++++.||.+ +.||..+|+.+....
T Consensus 149 tG~~~W~~~~~~~-----~~~~~~~~~~~~~-~v~~~~~dg~v-~a~d~~tG~~~W~~~ 200 (369)
T 2hz6_A 149 TRELRWNATYFDY-----AASLPEDDVDYKM-SHFVSNGDGLV-VTVDSESGDVLWIQN 200 (369)
T ss_dssp SSSCCCEEEEEEE-----CCBCCCCCTTCCC-CEEEEETSCEE-EEECTTTCCEEEEEE
T ss_pred CCCEEEeEecccc-----cCccccCCccccc-eEEEECCCCEE-EEEECCCCcEEEEec
Confidence 9987665543211 111222221 3 57778899999 999999999998433
No 231
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.74 E-value=5.9e-07 Score=100.12 Aligned_cols=227 Identities=14% Similarity=0.124 Sum_probs=142.8
Q ss_pred CCCCCEEE-EEeCCCeEEEEECCCC----eEEEEEe---c---cCCCCCEEEEEEeeCCCCEEEEEEcC------CcEEE
Q 003822 463 PSISCLMV-FGTLDGEIVVVNHENE----NIVSYIP---S---FGAMNSVLGLCWLKKYPSKLIAGSDN------GSLKL 525 (793)
Q Consensus 463 P~d~~~La-sgs~DG~I~VWd~~t~----~~i~~l~---~---~~h~~~V~sv~fs~~~g~~Lasgs~D------gtV~v 525 (793)
+ ++++|+ .|..++.|.|+|+.+. +.+.++. . .+ ...-..+..+ ++| +++++..+ |.|.+
T Consensus 93 ~-~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g-~s~Ph~~~~~-pdG-i~Vs~~g~~~g~~~g~v~v 168 (462)
T 2ece_A 93 I-ERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSG-YSRLHTVHCG-PDA-IYISALGNEEGEGPGGILM 168 (462)
T ss_dssp C-CSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHC-EEEEEEEEEC-SSC-EEEEEEEETTSCSCCEEEE
T ss_pred c-cCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccC-CCcccceeEC-CCe-EEEEcCCCcCCCCCCeEEE
Confidence 5 555555 5667889999998755 6666662 1 01 1133445555 677 77776655 78999
Q ss_pred EEcCCCCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEE-------------------CCCcEEEEECCCCcEEE
Q 003822 526 YDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASG-------------------YSKNIALYDINSGRRLQ 586 (793)
Q Consensus 526 WDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g-------------------~Dg~I~IWDl~tg~~l~ 586 (793)
.|.++.+..-.-..+.. ....-+.+.|+|+.+.++++. .+.+|.+||+.+++.+.
T Consensus 169 lD~~T~~v~~~~~~~~~------~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~ 242 (462)
T 2ece_A 169 LDHYSFEPLGKWEIDRG------DQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIH 242 (462)
T ss_dssp ECTTTCCEEEECCSBCT------TCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEE
T ss_pred EECCCCeEEEEEccCCC------CccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEee
Confidence 99998764221111100 001234577888888888774 36899999999998888
Q ss_pred EEccc-CCCCeEEEEE--cCCCCcEEEEEe-----CCCeEEEEECCCCCccceEE--ccC-----------------CCC
Q 003822 587 VFADM-HKEHINVVKF--SNHSPSIFATSS-----FDQDVKLWDLRQKPIQPCYT--ASS-----------------SKG 639 (793)
Q Consensus 587 ~~~~g-h~~~V~sv~f--spdg~~~LaTgs-----~Dg~IrIWDlrt~~~~~~~~--l~~-----------------~~~ 639 (793)
++.-+ .......+.| +|++...++++- .+++|.+|....+....... +.. ...
T Consensus 243 tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~ 322 (462)
T 2ece_A 243 SLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPL 322 (462)
T ss_dssp EEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCC
T ss_pred EEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCc
Confidence 88742 2234456666 999954555555 67788776655432111111 111 122
Q ss_pred eEEEEEecCCCEEEEEeC-CCeEEEEEcCC---CcEEEEEeeecCCC-------------CCcEEEEEeeCCCeEEEEEe
Q 003822 640 NVMVCFSPDDHYLLVSAV-DNEVRQLLAVD---GRVHLNFGITATGS-------------SQNYTRSYYLNGRDYIVSGS 702 (793)
Q Consensus 640 ~vsv~fSpdg~~Lasgs~-Dg~I~IwDl~t---g~~~~~l~~~~~~~-------------~~v~s~afspdg~~~L~Sgs 702 (793)
+..+.+||||++|+++.. .+.|.+||+.+ .+.+..+.. .+. .....+.++|||+ +|+++.
T Consensus 323 pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~t--GG~~~~~~~~~G~~~~ggPr~~~lSpDGk-~LyVaN 399 (462)
T 2ece_A 323 VTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKL--GGIFHRADHPAGHKLTGAPQMLEISRDGR-RVYVTN 399 (462)
T ss_dssp CCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEEC--BTTTTCBCCTTSCCCCSCCCCEEECTTSS-EEEEEC
T ss_pred eeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEe--CCeeccccccccccCCCCCCEEEEcCCCC-EEEEEc
Confidence 335899999999999885 68999999863 345554442 111 1357789999999 666665
No 232
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.73 E-value=1.1e-05 Score=83.70 Aligned_cols=222 Identities=8% Similarity=-0.002 Sum_probs=142.8
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcc
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSI 535 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~ 535 (793)
+..++|+|.++.++++-...+.|.+++...+.....+. ........+++.+..+..+++-...+.|.+++.+......
T Consensus 38 ~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~--~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~ 115 (267)
T 1npe_A 38 IIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIR--QDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRV 115 (267)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEEC--TTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred EEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEE--CCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEE
Confidence 78899999555566666667899999998665433332 2224678899873234444555567789999987533211
Q ss_pred cccccCCceeEecCCCCeEEEEEccCCCEEEEEEC---CCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEE
Q 003822 536 RGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY---SKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATS 612 (793)
Q Consensus 536 ~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~---Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTg 612 (793)
...........++++|.++.++.+.. .+.|..+++.. .....+..........++++|++..++++-
T Consensus 116 ---------~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg-~~~~~~~~~~~~~P~gia~d~~~~~lyv~d 185 (267)
T 1npe_A 116 ---------LFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG-TNRRILAQDNLGLPNGLTFDAFSSQLCWVD 185 (267)
T ss_dssp ---------EECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS-CCCEEEECTTCSCEEEEEEETTTTEEEEEE
T ss_pred ---------EEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCC-CCcEEEEECCCCCCcEEEEcCCCCEEEEEE
Confidence 00111245689999887887777663 36888888864 333333212335678999999875666777
Q ss_pred eCCCeEEEEECCCCCccceEEccCCCCeEEEEEecCCCEEEEEe-CCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEe
Q 003822 613 SFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLVSA-VDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYY 691 (793)
Q Consensus 613 s~Dg~IrIWDlrt~~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs-~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afs 691 (793)
...+.|.++|......... ......+..++.. +..|+++. ..+.|.++|..+++.+..+.. ........+++.
T Consensus 186 ~~~~~I~~~~~~g~~~~~~--~~~~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~~i~~--g~~~~p~gi~~~ 259 (267)
T 1npe_A 186 AGTHRAECLNPAQPGRRKV--LEGLQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHP--HKQTRLYGITIA 259 (267)
T ss_dssp TTTTEEEEEETTEEEEEEE--EECCCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECC--SSCCCCCCEEEE
T ss_pred CCCCEEEEEecCCCceEEE--ecCCCCceEEEEe--CCEEEEEECCCCeEEEEeCCCCCceEEEcc--ccccccceeeec
Confidence 7788999999976432222 2233345556554 55666665 468999999999998877752 112245667777
Q ss_pred eCCC
Q 003822 692 LNGR 695 (793)
Q Consensus 692 pdg~ 695 (793)
|++.
T Consensus 260 ~~~~ 263 (267)
T 1npe_A 260 LSQC 263 (267)
T ss_dssp CSCC
T ss_pred CccC
Confidence 7764
No 233
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.66 E-value=4.5e-06 Score=93.02 Aligned_cols=243 Identities=14% Similarity=0.163 Sum_probs=142.1
Q ss_pred EEEEECCC-----CeEEEEEeccCCCCCEEEEEE-----------ee-CCCCEE-EEEEcCCcEEEEEcCCCCCcccccc
Q 003822 478 IVVVNHEN-----ENIVSYIPSFGAMNSVLGLCW-----------LK-KYPSKL-IAGSDNGSLKLYDIRHMPPSIRGMH 539 (793)
Q Consensus 478 I~VWd~~t-----~~~i~~l~~~~h~~~V~sv~f-----------s~-~~g~~L-asgs~DgtV~vWDl~~~~~~~~~~~ 539 (793)
+.+.|++. ++.+..+....-........| +. .++++| +++..+++|.++|+.+.....+...
T Consensus 45 la~vDvdp~s~ty~~vi~~~~~p~~gde~HH~gwn~css~~~~~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k 124 (462)
T 2ece_A 45 IAVVDVNPKSETYSKIVHKVELPYINDELHHFGWNACSSALCPNGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIK 124 (462)
T ss_dssp EEEEECCTTSTTTTSEEEEEECSSSCCCBCCCEESCCGGGGSTTCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEE
T ss_pred EEEEECCCCCCCcceEEEEEECCCCCCcccccchhhhhhhcccccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeee
Confidence 44555554 666666655332223333334 20 345555 5566788999999975432111111
Q ss_pred cCC-ceeE-ecCCCCeEEEEEccCCCEEEEEECC------CcEEEEECCCCcEEEEEccc-CC-CCeEEEEEcCCCCcEE
Q 003822 540 YGA-GTVT-FDEFDQLTSVHVNSMDELFLASGYS------KNIALYDINSGRRLQVFADM-HK-EHINVVKFSNHSPSIF 609 (793)
Q Consensus 540 ~~~-~~~~-~~~~~~V~sv~~s~~~~~lla~g~D------g~I~IWDl~tg~~l~~~~~g-h~-~~V~sv~fspdg~~~L 609 (793)
.-. ..+. -........+...|++ .++++..+ |.|.++|..+++.+.++..+ .. ..-..+-|+|++ +.+
T Consensus 125 ~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~-~~m 202 (462)
T 2ece_A 125 VIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPN-EVL 202 (462)
T ss_dssp EECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTT-TEE
T ss_pred eechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCC-CEE
Confidence 000 0000 0001134556676777 66655444 78999999999999998732 21 224468889999 788
Q ss_pred EEEe-------------------CCCeEEEEECCCCCccceEEcc-CCCCeEEEEE--ecCCCEEEEEeC------CCeE
Q 003822 610 ATSS-------------------FDQDVKLWDLRQKPIQPCYTAS-SSKGNVMVCF--SPDDHYLLVSAV------DNEV 661 (793)
Q Consensus 610 aTgs-------------------~Dg~IrIWDlrt~~~~~~~~l~-~~~~~vsv~f--Spdg~~Lasgs~------Dg~I 661 (793)
+++. .+.+|.+||+.+++......+. .+..+..+.| +|+|+++++++. +++|
T Consensus 203 vsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V 282 (462)
T 2ece_A 203 VSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSI 282 (462)
T ss_dssp EECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEE
T ss_pred EEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceE
Confidence 8774 3688999999987444444432 1123334555 999999988874 5688
Q ss_pred EEEEcCCCcEE--EEEeeecC---C------------CCCcEEEEEeeCCCeEEEEEe-CCCcEEEEEEcCC---CcEEE
Q 003822 662 RQLLAVDGRVH--LNFGITAT---G------------SSQNYTRSYYLNGRDYIVSGS-CDEHVVRICCAQT---GRRLR 720 (793)
Q Consensus 662 ~IwDl~tg~~~--~~l~~~~~---~------------~~~v~s~afspdg~~~L~Sgs-~Dg~II~IWDv~t---g~~l~ 720 (793)
.+|....|+.. ..+..... . ......+.+++||+ +|.++. ..+.| .++|+.. .+.+.
T Consensus 283 ~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGr-fLYVSnrg~d~V-avfdV~d~~~~~lv~ 360 (462)
T 2ece_A 283 WLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDK-FLYLSLWGIGEV-RQYDISNPFKPVLTG 360 (462)
T ss_dssp EEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSC-EEEEEETTTTEE-EEEECSSTTSCEEEE
T ss_pred EEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCC-EEEEEeCCCCEE-EEEEecCCCCcEEEE
Confidence 88776655432 22211110 0 23466788999999 555544 45677 9999863 35555
Q ss_pred eeee
Q 003822 721 DISL 724 (793)
Q Consensus 721 ~~~L 724 (793)
.+..
T Consensus 361 ~I~t 364 (462)
T 2ece_A 361 KVKL 364 (462)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 3333
No 234
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.64 E-value=1.1e-05 Score=86.17 Aligned_cols=243 Identities=10% Similarity=0.068 Sum_probs=145.1
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccC-----------------CCCCEEEEEEeeCCCCEEEEEE
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFG-----------------AMNSVLGLCWLKKYPSKLIAGS 518 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~-----------------h~~~V~sv~fs~~~g~~Lasgs 518 (793)
+..++|++ +++++.++..++.|..|+..+++......... ....+.++++. ++...|+.+.
T Consensus 21 p~~i~~d~-~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~-~~~g~l~v~d 98 (322)
T 2fp8_A 21 PNSFTFDS-TNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYN-LQNNQLYIVD 98 (322)
T ss_dssp CCCEECCT-TCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEE-TTTTEEEEEE
T ss_pred ceEEEEcC-CCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEc-CCCCcEEEEE
Confidence 67789999 78878888889999999988765432211000 01357889886 4234556665
Q ss_pred cCCcEEEEEcCCCCCcccccccCCceeEecCCCCeEEEEEcc-CCCEEEEEEC-----------------CCcEEEEECC
Q 003822 519 DNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNS-MDELFLASGY-----------------SKNIALYDIN 580 (793)
Q Consensus 519 ~DgtV~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~-~~~~lla~g~-----------------Dg~I~IWDl~ 580 (793)
..+.|..+|..++.... +...... ........+++.+ ++..+++... ++.|..||..
T Consensus 99 ~~~~i~~~d~~~g~~~~--~~~~~~~---~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~ 173 (322)
T 2fp8_A 99 CYYHLSVVGSEGGHATQ--LATSVDG---VPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPS 173 (322)
T ss_dssp TTTEEEEECTTCEECEE--EESEETT---EECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETT
T ss_pred CCCCEEEEeCCCCEEEE--ecccCCC---CcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCC
Confidence 55568888876543211 1000000 0113467899988 6655554322 3678999988
Q ss_pred CCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEECCCCCc---cceEEccCCCCeEEEEEecCCCEEEEEeC
Q 003822 581 SGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPI---QPCYTASSSKGNVMVCFSPDDHYLLVSAV 657 (793)
Q Consensus 581 tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~Dg~IrIWDlrt~~~---~~~~~l~~~~~~vsv~fSpdg~~Lasgs~ 657 (793)
+++...... .....+.++|+|++..++++-+..+.|.+||+..... ....... ++..++++++|++.++...
T Consensus 174 ~~~~~~~~~--~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~---gP~gi~~d~~G~l~va~~~ 248 (322)
T 2fp8_A 174 TKETTLLLK--ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIP---NPGNIKRNADGHFWVSSSE 248 (322)
T ss_dssp TTEEEEEEE--EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECS---SEEEEEECTTSCEEEEEEE
T ss_pred CCEEEEecc--CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCC---CCCCeEECCCCCEEEEecC
Confidence 776433322 2234567999999833555556678999999875321 1112222 2556999999986666544
Q ss_pred ----------CCeEEEEEcCCCcEEEEEeeecCC-CCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcC
Q 003822 658 ----------DNEVRQLLAVDGRVHLNFGITATG-SSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQ 714 (793)
Q Consensus 658 ----------Dg~I~IwDl~tg~~~~~l~~~~~~-~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~ 714 (793)
.+.|..+|. +|+.+..+...... ...+..+++ .++. ++++....+.| .++++.
T Consensus 249 ~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~-L~v~~~~~~~i-~~~~~~ 312 (322)
T 2fp8_A 249 ELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGL-LYIGTLFHGSV-GILVYD 312 (322)
T ss_dssp ETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTE-EEEECSSCSEE-EEEEC-
T ss_pred cccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCCE-EEEeecCCCce-EEEecc
Confidence 467888886 57777776542211 123444554 4554 55555556677 787764
No 235
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.61 E-value=5.6e-06 Score=86.62 Aligned_cols=211 Identities=8% Similarity=-0.014 Sum_probs=137.1
Q ss_pred eEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEc--CCcEEEEEcCCCCCcccccccCCceeEecCCCCeEEEEEccCCCE
Q 003822 487 NIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSD--NGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDEL 564 (793)
Q Consensus 487 ~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~--DgtV~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~ 564 (793)
+.+.+++. +.......+.|+ +++.++++.+. ++.|.++|..+++...... .........+++ .++.
T Consensus 10 ~vv~~~p~-~~~~f~~Gl~~~-~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~--------l~~~~fgeGi~~--~g~~ 77 (266)
T 2iwa_A 10 EVLNEFPH-DPYAFTQGLVYA-ENDTLFESTGLYGRSSVRQVALQTGKVENIHK--------MDDSYFGEGLTL--LNEK 77 (266)
T ss_dssp EEEEEEEC-CTTCCEEEEEEC-STTEEEEEECSTTTCEEEEEETTTCCEEEEEE--------CCTTCCEEEEEE--ETTE
T ss_pred eEEEEEEC-CCCCCcccEEEe-CCCeEEEECCCCCCCEEEEEECCCCCEEEEEe--------cCCCcceEEEEE--eCCE
Confidence 45566643 222346889997 55544444443 5799999999987522111 111112234555 3567
Q ss_pred EEEEE-CCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEECCCCCccceEEccCCC----C
Q 003822 565 FLASG-YSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSK----G 639 (793)
Q Consensus 565 lla~g-~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~~----~ 639 (793)
++.+. .++.+.++|..+++.+.++.-+ ...- ..++++|..+++ +..++.|.++|..+.+........... .
T Consensus 78 lyv~t~~~~~v~viD~~t~~v~~~i~~g-~~~g--~glt~Dg~~l~v-s~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~ 153 (266)
T 2iwa_A 78 LYQVVWLKNIGFIYDRRTLSNIKNFTHQ-MKDG--WGLATDGKILYG-SDGTSILYEIDPHTFKLIKKHNVKYNGHRVIR 153 (266)
T ss_dssp EEEEETTCSEEEEEETTTTEEEEEEECC-SSSC--CEEEECSSSEEE-ECSSSEEEEECTTTCCEEEEEECEETTEECCC
T ss_pred EEEEEecCCEEEEEECCCCcEEEEEECC-CCCe--EEEEECCCEEEE-ECCCCeEEEEECCCCcEEEEEEECCCCccccc
Confidence 77776 5899999999999999998733 1222 335557744554 456889999999987544433332211 2
Q ss_pred eEEEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecC----------CCCCcEEEEEeeCCCeEEEEEeCCCcEEE
Q 003822 640 NVMVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITAT----------GSSQNYTRSYYLNGRDYIVSGSCDEHVVR 709 (793)
Q Consensus 640 ~vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~----------~~~~v~s~afspdg~~~L~Sgs~Dg~II~ 709 (793)
...+.|. +|+..+....++.|.+.|..+++.+..+..... .......++|+|+++.+++++...+++ .
T Consensus 154 ~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v-~ 231 (266)
T 2iwa_A 154 LNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKL-F 231 (266)
T ss_dssp EEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEE-E
T ss_pred ceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeE-E
Confidence 3347787 675444444578999999999999998875310 113457899999998788888888888 7
Q ss_pred EEEcCC
Q 003822 710 ICCAQT 715 (793)
Q Consensus 710 IWDv~t 715 (793)
+-++.+
T Consensus 232 ~i~l~~ 237 (266)
T 2iwa_A 232 EIKLHL 237 (266)
T ss_dssp EEEEEE
T ss_pred EEEEec
Confidence 777654
No 236
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.59 E-value=9e-05 Score=76.62 Aligned_cols=232 Identities=8% Similarity=0.061 Sum_probs=141.6
Q ss_pred EEEEEeCCCeEEEEECCCCeE-----EEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcccccccCC
Q 003822 468 LMVFGTLDGEIVVVNHENENI-----VSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGA 542 (793)
Q Consensus 468 ~Lasgs~DG~I~VWd~~t~~~-----i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~~~~~~~~ 542 (793)
+|+.+.. +.|+.++++.... ...+. .....+.+++|.+.++.++++-..++.|..++........
T Consensus 3 ~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~--~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~------- 72 (267)
T 1npe_A 3 HLLFAQT-GKIERLPLERNTMKKTEAKAFLH--IPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTT------- 72 (267)
T ss_dssp EEEEEEE-EEEEEEEESSSCBCGGGCEEEEE--EEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEE-------
T ss_pred EEEEEcC-CeEEEEEecCcccccccceeeec--CCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEE-------
Confidence 4444443 4788888875432 11121 1123577899973344445555567899999987643210
Q ss_pred ceeEecCCCCeEEEEEccCCCEEEEEE-CCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeC--CCeEE
Q 003822 543 GTVTFDEFDQLTSVHVNSMDELFLASG-YSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSF--DQDVK 619 (793)
Q Consensus 543 ~~~~~~~~~~V~sv~~s~~~~~lla~g-~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~--Dg~Ir 619 (793)
..........++++.+.++.++.+. ..+.|.++++.......... ........++++|+++.++++... .+.|.
T Consensus 73 --~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~-~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~ 149 (267)
T 1npe_A 73 --IIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFD-TGLVNPRGIVTDPVRGNLYWTDWNRDNPKIE 149 (267)
T ss_dssp --EECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC-SSCSSEEEEEEETTTTEEEEEECCSSSCEEE
T ss_pred --EEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEE-CCCCCccEEEEeeCCCEEEEEECCCCCcEEE
Confidence 0111224578999988777777776 46899999987543322232 122567899999976455555543 46898
Q ss_pred EEECCCCCccceEEccCCCCeEEEEEecCCCEEEEEe-CCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCCCeEE
Q 003822 620 LWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLVSA-VDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNGRDYI 698 (793)
Q Consensus 620 IWDlrt~~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs-~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg~~~L 698 (793)
.+++...... ......-..+..++++|++..|+.+. ..+.|.++|.........+. .......++. +++.++
T Consensus 150 ~~~~dg~~~~-~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~----~~~~P~gi~~--d~~~ly 222 (267)
T 1npe_A 150 TSHMDGTNRR-ILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLE----GLQYPFAVTS--YGKNLY 222 (267)
T ss_dssp EEETTSCCCE-EEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEE----CCCSEEEEEE--ETTEEE
T ss_pred EEecCCCCcE-EEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEec----CCCCceEEEE--eCCEEE
Confidence 8888654322 22212233466799999888776665 46799999987544322222 2233445543 455344
Q ss_pred EEEeCCCcEEEEEEcCCCcEEE
Q 003822 699 VSGSCDEHVVRICCAQTGRRLR 720 (793)
Q Consensus 699 ~Sgs~Dg~II~IWDv~tg~~l~ 720 (793)
++....+.| .++|..+|+.+.
T Consensus 223 va~~~~~~v-~~~d~~~g~~~~ 243 (267)
T 1npe_A 223 YTDWKTNSV-IAMDLAISKEMD 243 (267)
T ss_dssp EEETTTTEE-EEEETTTTEEEE
T ss_pred EEECCCCeE-EEEeCCCCCceE
Confidence 444455777 999999999888
No 237
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.58 E-value=5.9e-06 Score=98.07 Aligned_cols=200 Identities=10% Similarity=0.080 Sum_probs=128.4
Q ss_pred CCEEEEEeCCCeEEEEECCCCeEEEEEeccCCC--------CCE-EEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCccc
Q 003822 466 SCLMVFGTLDGEIVVVNHENENIVSYIPSFGAM--------NSV-LGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIR 536 (793)
Q Consensus 466 ~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~--------~~V-~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~~ 536 (793)
+..+++++.++.|.-+|..+|+.+......... ..+ ..++. .+..+++++.|+.|..+|..+++....
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~v~~~dg~l~alD~~tG~~~W~ 142 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL---WGDKVYVGTLDGRLIALDAKTGKAIWS 142 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE---EBTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE---ECCEEEEEcCCCEEEEEECCCCCEeee
Confidence 457778888999999999999998877532110 001 11222 245788888999999999999887544
Q ss_pred ccccCCceeEecC-CCCeEEEEEccCCCEEEEEEC------CCcEEEEECCCCcEEEEEccc--CCC-------------
Q 003822 537 GMHYGAGTVTFDE-FDQLTSVHVNSMDELFLASGY------SKNIALYDINSGRRLQVFADM--HKE------------- 594 (793)
Q Consensus 537 ~~~~~~~~~~~~~-~~~V~sv~~s~~~~~lla~g~------Dg~I~IWDl~tg~~l~~~~~g--h~~------------- 594 (793)
........ .+.. ..++ + .++.++++.. +|.|..+|..+|+.+.++... ...
T Consensus 143 ~~~~~~~~-~~~~~~~P~----v--~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~ 215 (668)
T 1kv9_A 143 QQTTDPAK-PYSITGAPR----V--VKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAK 215 (668)
T ss_dssp EECSCTTS-SCBCCSCCE----E--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHT
T ss_pred eccCCCCC-cceecCCCE----E--ECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccc
Confidence 32211000 0000 0111 1 2556666543 589999999999999887521 000
Q ss_pred ---------------CeEEEEEcCCCCcEEEEEeCCC-------------------eEEEEECCCCCccceEEccCCC--
Q 003822 595 ---------------HINVVKFSNHSPSIFATSSFDQ-------------------DVKLWDLRQKPIQPCYTASSSK-- 638 (793)
Q Consensus 595 ---------------~V~sv~fspdg~~~LaTgs~Dg-------------------~IrIWDlrt~~~~~~~~l~~~~-- 638 (793)
....+++.|+. .+++.++.++ .|..+|.++++..=.+....+.
T Consensus 216 ~~~g~~~w~~~~gg~~w~~~a~d~~~-~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~w 294 (668)
T 1kv9_A 216 TWQGDQYWKLGGGGTVWDSMAYDPEL-DLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSW 294 (668)
T ss_dssp TCCSSCHHHHCEECCCCSCEEEETTT-TEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCS
T ss_pred cCCccceeeeCCCCccccceEEcCCC-CEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccc
Confidence 11246788877 5777777665 3999999998654444433222
Q ss_pred ------CeEEEEEecCCC---EEEEEeCCCeEEEEEcCCCcEEEEEe
Q 003822 639 ------GNVMVCFSPDDH---YLLVSAVDNEVRQLLAVDGRVHLNFG 676 (793)
Q Consensus 639 ------~~vsv~fSpdg~---~Lasgs~Dg~I~IwDl~tg~~~~~l~ 676 (793)
..+...+..+|+ .+++++.+|.++++|..+|+.+....
T Consensus 295 d~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~ 341 (668)
T 1kv9_A 295 DFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEK 341 (668)
T ss_dssp CCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEE
T ss_pred cccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEecccc
Confidence 223233444775 68899999999999999999885543
No 238
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.54 E-value=1.1e-05 Score=84.32 Aligned_cols=196 Identities=8% Similarity=0.004 Sum_probs=132.9
Q ss_pred eEEEEEeCCCCCEEEEEeC--CCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCC
Q 003822 456 PRQFEYHPSISCLMVFGTL--DGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPP 533 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~--DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~ 533 (793)
+..++|+| ++.++++.+. ++.|.++|+.+++.+..+....+ .....+++. ++...++.-.++.+.++|..+.+.
T Consensus 23 ~~Gl~~~~-dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~-~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v 98 (266)
T 2iwa_A 23 TQGLVYAE-NDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDS-YFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSN 98 (266)
T ss_dssp EEEEEECS-TTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTT-CCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEE
T ss_pred cccEEEeC-CCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCC-cceEEEEEe--CCEEEEEEecCCEEEEEECCCCcE
Confidence 67899999 6655555543 57999999999999998875333 233456654 333444445678999999988654
Q ss_pred cccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcccC-C---CCeEEEEEcCCCCcEE
Q 003822 534 SIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMH-K---EHINVVKFSNHSPSIF 609 (793)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh-~---~~V~sv~fspdg~~~L 609 (793)
... + ... ...-.. +.++++.++++..++.|.++|..+.+.+..+.-+. . ..++.+.|. ++ .++
T Consensus 99 ~~~-i-------~~g-~~~g~g--lt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg-~ly 165 (266)
T 2iwa_A 99 IKN-F-------THQ-MKDGWG--LATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NG-EVW 165 (266)
T ss_dssp EEE-E-------ECC-SSSCCE--EEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TT-EEE
T ss_pred EEE-E-------ECC-CCCeEE--EEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CC-EEE
Confidence 211 1 111 011123 33577777777678999999999999888877321 1 246788888 66 666
Q ss_pred EEEeCCCeEEEEECCCCCccceEEccCC------------CCeEEEEEecCCCEEEEEe-CCCeEEEEEcCC
Q 003822 610 ATSSFDQDVKLWDLRQKPIQPCYTASSS------------KGNVMVCFSPDDHYLLVSA-VDNEVRQLLAVD 668 (793)
Q Consensus 610 aTgs~Dg~IrIWDlrt~~~~~~~~l~~~------------~~~vsv~fSpdg~~Lasgs-~Dg~I~IwDl~t 668 (793)
+....++.|.+.|..+++......+.+. .....++|+|+++.+++++ ..+.+.+.++..
T Consensus 166 vn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~ 237 (266)
T 2iwa_A 166 ANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHL 237 (266)
T ss_dssp EEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEE
T ss_pred EecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEec
Confidence 6666788999999999876655554311 2334699999988766655 567888877654
No 239
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.53 E-value=1.4e-06 Score=100.24 Aligned_cols=231 Identities=11% Similarity=0.038 Sum_probs=155.3
Q ss_pred EEEEEeCCCeEEEEECCCCeEEEEEeccC-------------------------------C------CCCEEEEEEee--
Q 003822 468 LMVFGTLDGEIVVVNHENENIVSYIPSFG-------------------------------A------MNSVLGLCWLK-- 508 (793)
Q Consensus 468 ~Lasgs~DG~I~VWd~~t~~~i~~l~~~~-------------------------------h------~~~V~sv~fs~-- 508 (793)
.+.+|+..|.++|+-+.+++.+..++... + .+.......+.
T Consensus 17 ~f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~~~s~t~ 96 (595)
T 1fwx_A 17 GFWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTE 96 (595)
T ss_dssp EEECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCEEEEEET
T ss_pred EEeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCccccCCCC
Confidence 46688999999999999888877764320 0 01111233332
Q ss_pred --CCCCEEEEEEc-CCcEEEEEcCCCCCcccccccCCceeEecCCCCeEEEEE-c-cCCCEEEEEE--------------
Q 003822 509 --KYPSKLIAGSD-NGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHV-N-SMDELFLASG-------------- 569 (793)
Q Consensus 509 --~~g~~Lasgs~-DgtV~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~-s-~~~~~lla~g-------------- 569 (793)
++|++++.... ++.|.+.|+.+.+... .+.......+..+++ . |+++++++++
T Consensus 97 g~~DG~~lfVnd~~~~rVavIdl~t~~~~~--------ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~ 168 (595)
T 1fwx_A 97 GKYDGRFLFMNDKANTRVARVRCDVMKCDA--------ILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNME 168 (595)
T ss_dssp TEEEEEEEEEEETTTTEEEEEETTTTEEEE--------EEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTT
T ss_pred CCcCCCEEEEEcCCCCEEEEEECCCceEee--------EEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccc
Confidence 24566666554 5579999999866421 111222234677777 3 7888888885
Q ss_pred ----CCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeCCC-----------------------------
Q 003822 570 ----YSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQ----------------------------- 616 (793)
Q Consensus 570 ----~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~Dg----------------------------- 616 (793)
.++.+.++|..+.+.+.++.- .+....++++|+| +++++.+.+.
T Consensus 169 ~~~~~~~~vtvID~~t~~v~~qI~V--gg~pd~~~~spdG-k~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v 245 (595)
T 1fwx_A 169 DVANYVNVFTAVDADKWEVAWQVLV--SGNLDNCDADYEG-KWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAI 245 (595)
T ss_dssp CGGGEEEEEEEEETTTTEEEEEEEE--SSCCCCEEECSSS-SEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHH
T ss_pred cccccCceEEEEECCCCeEEEEEEe--CCCccceEECCCC-CEEEEEecCcccCcchhhccccccceEEEeeccceeEec
Confidence 246899999999999988872 1245678899998 6666666442
Q ss_pred ---------eEEEEECCCCCccc-eEEccCCCCeEEEEEecCCCEEEEEe-CCCeEEEEEcCCCc------------EEE
Q 003822 617 ---------DVKLWDLRQKPIQP-CYTASSSKGNVMVCFSPDDHYLLVSA-VDNEVRQLLAVDGR------------VHL 673 (793)
Q Consensus 617 ---------~IrIWDlrt~~~~~-~~~l~~~~~~vsv~fSpdg~~Lasgs-~Dg~I~IwDl~tg~------------~~~ 673 (793)
.|.+.|.++.+... +..++....+..+.++|||+++++++ .+++|.++|+.+.+ ...
T Consensus 246 ~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~ 325 (595)
T 1fwx_A 246 AAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVA 325 (595)
T ss_dssp HHTCSEEETTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEE
T ss_pred cCCCeeEECcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEE
Confidence 37777777621112 22333333444689999999988877 57899999998653 233
Q ss_pred EEeeecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCC
Q 003822 674 NFGITATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQT 715 (793)
Q Consensus 674 ~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~t 715 (793)
.. .........+|+++| ...++.-.|+.| .+||+.+
T Consensus 326 ~v----~vG~gP~h~aF~~dG-~aY~t~~ldsqV-~kwdi~~ 361 (595)
T 1fwx_A 326 EP----ELGLGPLHTAFDGRG-NAYTSLFLDSQV-VKWNIED 361 (595)
T ss_dssp CC----BCCSCEEEEEECTTS-EEEEEETTTTEE-EEEEHHH
T ss_pred Ec----CCCCCcceEEECCCC-eEEEEEecCCcE-EEEEhhH
Confidence 33 344578899999999 477778888999 9999987
No 240
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.50 E-value=1.4e-05 Score=94.86 Aligned_cols=250 Identities=12% Similarity=0.134 Sum_probs=158.0
Q ss_pred CCEEEEEeCCCeEEEEECCCCeEEEEEeccCCC--CCEEE-EEEeeCCCCEEEEEEc------CCcEEEEEcCCCCCccc
Q 003822 466 SCLMVFGTLDGEIVVVNHENENIVSYIPSFGAM--NSVLG-LCWLKKYPSKLIAGSD------NGSLKLYDIRHMPPSIR 536 (793)
Q Consensus 466 ~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~--~~V~s-v~fs~~~g~~Lasgs~------DgtV~vWDl~~~~~~~~ 536 (793)
+..++.++.||.|..+|..+|+.+......... ..+.+ ... .+..++++.. +|.|..+|..+++....
T Consensus 117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v---~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~ 193 (668)
T 1kv9_A 117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRV---VKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWR 193 (668)
T ss_dssp BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEE---ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEE---ECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEE
Confidence 357888899999999999999998877642211 11111 111 1345555543 58999999999887543
Q ss_pred ccccC-Ccee------------Ee---------cCCCCeEEEEEccCCCEEEEEECCC-------------------cEE
Q 003822 537 GMHYG-AGTV------------TF---------DEFDQLTSVHVNSMDELFLASGYSK-------------------NIA 575 (793)
Q Consensus 537 ~~~~~-~~~~------------~~---------~~~~~V~sv~~s~~~~~lla~g~Dg-------------------~I~ 575 (793)
..... .... .+ .+......+++.+..+.++++..++ .|.
T Consensus 194 ~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~ 273 (668)
T 1kv9_A 194 FYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSIL 273 (668)
T ss_dssp EESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEE
T ss_pred ecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEE
Confidence 32100 0000 00 0011123467777788888876655 499
Q ss_pred EEECCCCcEEEEEccc-CC-------CCeEEEEEcCCCC--cEEEEEeCCCeEEEEECCCCCccceEEccC---------
Q 003822 576 LYDINSGRRLQVFADM-HK-------EHINVVKFSNHSP--SIFATSSFDQDVKLWDLRQKPIQPCYTASS--------- 636 (793)
Q Consensus 576 IWDl~tg~~l~~~~~g-h~-------~~V~sv~fspdg~--~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~--------- 636 (793)
.+|..+|+.+..++.. |. .++....+..+|. ..++.++.+|.+.++|.++++......+..
T Consensus 274 AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~ 353 (668)
T 1kv9_A 274 AIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDL 353 (668)
T ss_dssp EECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECT
T ss_pred EEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEecccccccccccccccc
Confidence 9999999999988742 22 2233233333551 268889999999999999986431111100
Q ss_pred -----------------------CC---CeEEEEEecCCCEEEEEe----------------------------------
Q 003822 637 -----------------------SK---GNVMVCFSPDDHYLLVSA---------------------------------- 656 (793)
Q Consensus 637 -----------------------~~---~~vsv~fSpdg~~Lasgs---------------------------------- 656 (793)
.. ..-.++++|+...+++..
T Consensus 354 ~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~ 433 (668)
T 1kv9_A 354 ATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPA 433 (668)
T ss_dssp TTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCG
T ss_pred ccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCC
Confidence 00 001267888877766522
Q ss_pred --CCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEEeeee
Q 003822 657 --VDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRLRDISL 724 (793)
Q Consensus 657 --~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L 724 (793)
.+|.|..||+.+|+.+-+.... ...........+. +++.|+.|+.+ ++||..+|+.+..+.+
T Consensus 434 ~~~~g~l~A~D~~tG~~~W~~~~~----~~~~~~~~~t~gg-~vf~g~~dg~l-~a~d~~tG~~l~~~~~ 497 (668)
T 1kv9_A 434 AVVSGALLAWDPVKQKAAWKVPYP----THWNGGTLSTAGN-LVFQGTAAGQM-HAYSADKGEALWQFEA 497 (668)
T ss_dssp GGCEEEEEEEETTTTEEEEEEEES----SSCCCCEEEETTT-EEEEECTTSEE-EEEETTTCCEEEEEEC
T ss_pred CCccceEEEEeCCCCcEEEEccCC----CCCcCceeEeCCC-EEEEECCcccc-hhhhhhcChhheEecC
Confidence 2378999999999987776532 1222334455666 88889999999 9999999999994444
No 241
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.49 E-value=2.5e-05 Score=90.87 Aligned_cols=248 Identities=10% Similarity=0.119 Sum_probs=154.1
Q ss_pred CCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCC--CEEE-EEEeeCCCCEEEEEEc------CCcEEEEEcCCCCCccc
Q 003822 466 SCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMN--SVLG-LCWLKKYPSKLIAGSD------NGSLKLYDIRHMPPSIR 536 (793)
Q Consensus 466 ~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~--~V~s-v~fs~~~g~~Lasgs~------DgtV~vWDl~~~~~~~~ 536 (793)
+..++.++.|+.|..+|..+|+.+.......+.. .+.+ ... .+..+++++. ++.|..+|..+++...+
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v---~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~ 191 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFV---AKDTVLMGCSGAELGVRGAVNAFDLKTGELKWR 191 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE---ETTEEEEECBCGGGTCCCEEEEEETTTCCEEEE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEE---ECCEEEEEecCCccCCCCEEEEEECCCCcEEEE
Confidence 4578888899999999999999987766433211 1211 111 1345666654 78999999999887543
Q ss_pred ccccCCc----------------------eeEe-----c-CCC-CeEEEEEccCCCEEEEEECC----------------
Q 003822 537 GMHYGAG----------------------TVTF-----D-EFD-QLTSVHVNSMDELFLASGYS---------------- 571 (793)
Q Consensus 537 ~~~~~~~----------------------~~~~-----~-~~~-~V~sv~~s~~~~~lla~g~D---------------- 571 (793)
....... ...+ . ... ....+++.+..+.++.+..+
T Consensus 192 ~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~ 271 (571)
T 2ad6_A 192 AFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWT 271 (571)
T ss_dssp EESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTT
T ss_pred EccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeE
Confidence 2211100 0000 0 000 01234555666777666532
Q ss_pred CcEEEEECCCCcEEEEEccc-CC--------CCeEEEEEcCCCC--cEEEEEeCCCeEEEEECCCCCccceEEccCCC--
Q 003822 572 KNIALYDINSGRRLQVFADM-HK--------EHINVVKFSNHSP--SIFATSSFDQDVKLWDLRQKPIQPCYTASSSK-- 638 (793)
Q Consensus 572 g~I~IWDl~tg~~l~~~~~g-h~--------~~V~sv~fspdg~--~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~~-- 638 (793)
+.|..+|..+|+.+..++.. |. .++. +...++|. ..++.++.+|.+.++|..+++..-...+....
T Consensus 272 ~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w 350 (571)
T 2ad6_A 272 MTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNV 350 (571)
T ss_dssp TEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCS
T ss_pred EEEEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccc
Confidence 35999999999999888632 21 1221 22223552 25778889999999999988543332222100
Q ss_pred ---------Ce---------------------------EEEEEecCCCEEEEEe--------------------------
Q 003822 639 ---------GN---------------------------VMVCFSPDDHYLLVSA-------------------------- 656 (793)
Q Consensus 639 ---------~~---------------------------vsv~fSpdg~~Lasgs-------------------------- 656 (793)
.+ -.++++|+...+++.+
T Consensus 351 ~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~ 430 (571)
T 2ad6_A 351 FKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLA 430 (571)
T ss_dssp EEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEE
T ss_pred cccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccce
Confidence 00 1257888888877764
Q ss_pred -----------CCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEEeee
Q 003822 657 -----------VDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRLRDIS 723 (793)
Q Consensus 657 -----------~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~ 723 (793)
.+|.|..||+.+|+.+.++.... .+........+. .++.++.||.+ +.||..+|+.+..+.
T Consensus 431 ~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~----~~~~~~~~t~gg-~v~~g~~dg~l-~a~D~~tG~~lw~~~ 502 (571)
T 2ad6_A 431 MYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKF----AAWGGTLYTKGG-LVWYATLDGYL-KALDNKDGKELWNFK 502 (571)
T ss_dssp EEECTTSTTSCCCEEEEEECTTTCCEEEEEEESS----CCCSBCEEETTT-EEEEECTTSEE-EEEETTTCCEEEEEE
T ss_pred eccCccccCCCCCCeEEEEECCCCCEEEEecCCC----CccceeEEECCC-EEEEEcCCCeE-EEEECCCCCEEEEEe
Confidence 24789999999999877775321 122222334455 67779999999 999999999999433
No 242
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.49 E-value=1.5e-06 Score=95.48 Aligned_cols=214 Identities=7% Similarity=-0.102 Sum_probs=129.5
Q ss_pred eEEEEEeCCCCCEEEEEe----------CCCeEEEEECCCCeEEEEEeccCCC-----CCEEEEEEeeCCCCEEEEEEc-
Q 003822 456 PRQFEYHPSISCLMVFGT----------LDGEIVVVNHENENIVSYIPSFGAM-----NSVLGLCWLKKYPSKLIAGSD- 519 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs----------~DG~I~VWd~~t~~~i~~l~~~~h~-----~~V~sv~fs~~~g~~Lasgs~- 519 (793)
+ .++++| +++.++++. .++.|.+||..+++.+..+...+.. .....++++ ++|++++++..
T Consensus 68 P-~i~~sp-Dg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~S-pDGk~lyVan~~ 144 (368)
T 1mda_H 68 S-LAVAGH-SGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNC-ASSACLLFFLFG 144 (368)
T ss_dssp C-EEEECT-TSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEEC-TTSSCEEEEECS
T ss_pred C-ceEECC-CCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEc-CCCCEEEEEccC
Confidence 5 799999 777777765 3688999999999999998753111 234467776 79988888874
Q ss_pred -CCcEEE--EEcCCCCCcccc-------cccCCceeEecCCCCeEEEE--------------------------EccCCC
Q 003822 520 -NGSLKL--YDIRHMPPSIRG-------MHYGAGTVTFDEFDQLTSVH--------------------------VNSMDE 563 (793)
Q Consensus 520 -DgtV~v--WDl~~~~~~~~~-------~~~~~~~~~~~~~~~V~sv~--------------------------~s~~~~ 563 (793)
+..|.+ +|..+ ...+.. ..+....+.....+.+..+. ..++++
T Consensus 145 ~~~~v~V~~iD~~t-v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~~~~~~~ 223 (368)
T 1mda_H 145 SSAAAGLSVPGASD-DQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPG 223 (368)
T ss_dssp SSCEEEEEETTTEE-EEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTT
T ss_pred CCCeEEEEEEchhh-ceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCccccccCC
Confidence 457888 88865 111100 00000000000000011111 134556
Q ss_pred EEEEEECCCcEEEEECCCCc--EEEEEccc---------CCCCeEEEEEcCCCCcEEEEEe---C-----CCeEEEEECC
Q 003822 564 LFLASGYSKNIALYDINSGR--RLQVFADM---------HKEHINVVKFSNHSPSIFATSS---F-----DQDVKLWDLR 624 (793)
Q Consensus 564 ~lla~g~Dg~I~IWDl~tg~--~l~~~~~g---------h~~~V~sv~fspdg~~~LaTgs---~-----Dg~IrIWDlr 624 (793)
.++..+. +.|.+.|..++. .+..+.-. .......++++|++..++++.. . ++.+.++|+.
T Consensus 224 ~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~ 302 (368)
T 1mda_H 224 MLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTAS 302 (368)
T ss_dssp EEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESS
T ss_pred EEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECC
Confidence 6666666 888888986532 22222100 0111122689999855554444 2 2356699999
Q ss_pred CCCccceEEccCCCCeEEEEEecCCCEE-EEEe-CCCeEEEEEcCCCcEEEEEe
Q 003822 625 QKPIQPCYTASSSKGNVMVCFSPDDHYL-LVSA-VDNEVRQLLAVDGRVHLNFG 676 (793)
Q Consensus 625 t~~~~~~~~l~~~~~~vsv~fSpdg~~L-asgs-~Dg~I~IwDl~tg~~~~~l~ 676 (793)
+.+.. ..++....+..++|+|||+++ ++.. .++.|.++|+.+++.+.++.
T Consensus 303 t~~vv--~~i~vg~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~ 354 (368)
T 1mda_H 303 VGQTS--GPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVE 354 (368)
T ss_dssp SCCEE--ECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECC
T ss_pred CCeEE--EEEECCCCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEE
Confidence 98543 333333356679999999854 5555 48999999999999988875
No 243
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.49 E-value=1.1e-05 Score=83.77 Aligned_cols=195 Identities=11% Similarity=0.041 Sum_probs=125.5
Q ss_pred EEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCC--cEEEEEcCCCCCcccccccCCceeEecCCCCeEEEEEccCCCEE
Q 003822 488 IVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNG--SLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELF 565 (793)
Q Consensus 488 ~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~Dg--tV~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~l 565 (793)
.+.+++. +...-...+.|+ ++.++.+++.+| .|+++|+++++...... . ........+.+.++.+
T Consensus 33 vv~~~ph-d~~~ftqGL~~~--~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~--------l--~~~~FgeGit~~g~~l 99 (262)
T 3nol_A 33 IVHSYPH-DTKAFTEGFFYR--NGYFYESTGLNGRSSIRKVDIESGKTLQQIE--------L--GKRYFGEGISDWKDKI 99 (262)
T ss_dssp EEEEEEC-CTTCEEEEEEEE--TTEEEEEEEETTEEEEEEECTTTCCEEEEEE--------C--CTTCCEEEEEEETTEE
T ss_pred EEEEecC-CCCcccceEEEE--CCEEEEECCCCCCceEEEEECCCCcEEEEEe--------c--CCccceeEEEEeCCEE
Confidence 4555642 333445788886 566677777766 89999999987532211 1 1222222222346666
Q ss_pred EEEE-CCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEECCCCCccceEEccCCCCe----
Q 003822 566 LASG-YSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGN---- 640 (793)
Q Consensus 566 la~g-~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~~~~---- 640 (793)
.... .++.+.+||..+.+.+.++.- ...-..++ +++ ..|+.+..++.|.++|..+.+.............
T Consensus 100 y~ltw~~~~v~v~D~~t~~~~~ti~~--~~eG~glt--~dg-~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~l 174 (262)
T 3nol_A 100 VGLTWKNGLGFVWNIRNLRQVRSFNY--DGEGWGLT--HND-QYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPEL 174 (262)
T ss_dssp EEEESSSSEEEEEETTTCCEEEEEEC--SSCCCCEE--ECS-SCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCE
T ss_pred EEEEeeCCEEEEEECccCcEEEEEEC--CCCceEEe--cCC-CEEEEECCCCeEEEEcCCCCeEEEEEEeccCCcccccc
Confidence 6666 589999999999999999983 22223444 466 4444445578899999998765444443221112
Q ss_pred EEEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeec---------CCCCCcEEEEEeeCCCeEEEEE
Q 003822 641 VMVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITA---------TGSSQNYTRSYYLNGRDYIVSG 701 (793)
Q Consensus 641 vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~---------~~~~~v~s~afspdg~~~L~Sg 701 (793)
..+.|. +|+..+....++.|.+.|..+|+.+..+.... ........++|+|+++.++++|
T Consensus 175 NELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG 243 (262)
T 3nol_A 175 NELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG 243 (262)
T ss_dssp EEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred ceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence 236776 67644444468899999999999999887531 1123457799999988677776
No 244
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.48 E-value=3.3e-06 Score=91.36 Aligned_cols=206 Identities=9% Similarity=0.007 Sum_probs=130.7
Q ss_pred ceEEEEEeCCCCCEEEEEeC-----CCeEEEEECCCCeEEEEEecc----CCCCCEEEEEEeeCCCCEEEEEE---cCCc
Q 003822 455 RPRQFEYHPSISCLMVFGTL-----DGEIVVVNHENENIVSYIPSF----GAMNSVLGLCWLKKYPSKLIAGS---DNGS 522 (793)
Q Consensus 455 ~V~~vafsP~d~~~Lasgs~-----DG~I~VWd~~t~~~i~~l~~~----~h~~~V~sv~fs~~~g~~Lasgs---~Dgt 522 (793)
.|..++++| +++++++... ++.|.+||+.+++.+..+... .+...+..+++.+.++..+++.. .++.
T Consensus 68 ~p~gv~~d~-~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~ 146 (343)
T 2qe8_A 68 TVLGIKSDG-NGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAA 146 (343)
T ss_dssp CEEEEEECS-SSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCE
T ss_pred EeeEEEEcC-CCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCe
Confidence 489999999 7777776544 578999999999987777642 12345678888633444455555 6789
Q ss_pred EEEEEcCCCCCcccccccCC------ceeEec---------------CCCCeEEEEEccCCCEEEEEECCC-cEEEEECC
Q 003822 523 LKLYDIRHMPPSIRGMHYGA------GTVTFD---------------EFDQLTSVHVNSMDELFLASGYSK-NIALYDIN 580 (793)
Q Consensus 523 V~vWDl~~~~~~~~~~~~~~------~~~~~~---------------~~~~V~sv~~s~~~~~lla~g~Dg-~I~IWDl~ 580 (793)
|.+||..+++.. +....+. ...... ....+..++++|++..++++..++ .+..++..
T Consensus 147 i~v~d~~~g~~~-r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~ 225 (343)
T 2qe8_A 147 LIRVDLQTGLAA-RVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSA 225 (343)
T ss_dssp EEEEETTTCCEE-EECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHH
T ss_pred EEEEECCCCCEE-EEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHH
Confidence 999999876531 1111100 000000 113468899999888888877654 55555532
Q ss_pred ---CCc--------EEEEEcccCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEECCCCCccceEEccCCCCeEEEEEecCC
Q 003822 581 ---SGR--------RLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDD 649 (793)
Q Consensus 581 ---tg~--------~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~~~~vsv~fSpdg 649 (793)
.+. .+... ++.+....++++++| .++++...++.|.+||..+++...+...+.-..+..++|.++|
T Consensus 226 ~~~~~~~~~~~~~~~~~~~--g~~g~pdgia~d~~G-~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g 302 (343)
T 2qe8_A 226 DLSNLQLTDAELGSKIERY--SEKPICDGISIDKDH-NIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDG 302 (343)
T ss_dssp HHTCTTCCHHHHHTTCEEE--EECCSCSCEEECTTC-CEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTS
T ss_pred HhcCCCCChhhhhcceEec--ccCCCCceEEECCCC-CEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCC
Confidence 111 01111 234456679999998 8999988899999999855543333332222345679999999
Q ss_pred CEEEEEeCCCeEEEEE
Q 003822 650 HYLLVSAVDNEVRQLL 665 (793)
Q Consensus 650 ~~Lasgs~Dg~I~IwD 665 (793)
+.+++.+..+.+.+|.
T Consensus 303 ~l~v~~~~~~~~~~f~ 318 (343)
T 2qe8_A 303 YLYFDCNQLHHSAPLN 318 (343)
T ss_dssp CEEEEECCGGGSGGGB
T ss_pred cEEEEeCccccccccc
Confidence 8877777555554443
No 245
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.47 E-value=5.7e-05 Score=77.67 Aligned_cols=196 Identities=10% Similarity=0.058 Sum_probs=126.1
Q ss_pred eEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcC--CcEEEEEcCCCCCcccccccCCceeEecCCCCeEEEEEccCCCE
Q 003822 487 NIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDN--GSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDEL 564 (793)
Q Consensus 487 ~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~D--gtV~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~ 564 (793)
+.+..++. ....-...+.|. ++.++.+.+.+ ..|+.+|+.+++..... .......--.+++ .++.
T Consensus 10 ~v~~~~ph-d~~~ftqGL~~~--~~~LyestG~~g~S~v~~vD~~tgkv~~~~--------~l~~~~fgeGi~~--~~~~ 76 (243)
T 3mbr_X 10 RVVKRYPH-DTTAFTEGLFYL--RGHLYESTGETGRSSVRKVDLETGRILQRA--------EVPPPYFGAGIVA--WRDR 76 (243)
T ss_dssp EEEEEEEC-CTTCCEEEEEEE--TTEEEEEECCTTSCEEEEEETTTCCEEEEE--------ECCTTCCEEEEEE--ETTE
T ss_pred EEEEEcCC-CCccccccEEEE--CCEEEEECCCCCCceEEEEECCCCCEEEEE--------eCCCCcceeEEEE--eCCE
Confidence 35556643 344567889986 35566666665 48999999998753211 1111111123333 4566
Q ss_pred EEEEE-CCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEECCCCCccceEEccCCC----C
Q 003822 565 FLASG-YSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSK----G 639 (793)
Q Consensus 565 lla~g-~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~~----~ 639 (793)
+.... .++.+.+||..+.+.+.++.- ...-..++ +++..+++ +..++.|.++|..+.+.........+. .
T Consensus 77 ly~ltw~~~~v~v~D~~tl~~~~ti~~--~~~Gwglt--~dg~~L~v-Sdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~ 151 (243)
T 3mbr_X 77 LIQLTWRNHEGFVYDLATLTPRARFRY--PGEGWALT--SDDSHLYM-SDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDN 151 (243)
T ss_dssp EEEEESSSSEEEEEETTTTEEEEEEEC--SSCCCEEE--ECSSCEEE-ECSSSEEEEECTTTCCEEEEEECEETTEECCC
T ss_pred EEEEEeeCCEEEEEECCcCcEEEEEeC--CCCceEEe--eCCCEEEE-ECCCCeEEEEeCCCCeEEEEEEEccCCccccc
Confidence 66665 589999999999999999983 23334554 46634444 456889999999987654444432221 2
Q ss_pred eEEEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeec----------CCCCCcEEEEEeeCCCeEEEEE
Q 003822 640 NVMVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITA----------TGSSQNYTRSYYLNGRDYIVSG 701 (793)
Q Consensus 640 ~vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~----------~~~~~v~s~afspdg~~~L~Sg 701 (793)
..-+.|. +|+..+....++.|.+.|..+|+.+..+.... ........++|.|+++.+++||
T Consensus 152 lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 152 LNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp EEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred ceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence 2235655 66644444468899999999999999887542 1223456799999988677776
No 246
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.45 E-value=2.1e-05 Score=81.72 Aligned_cols=195 Identities=8% Similarity=-0.060 Sum_probs=129.2
Q ss_pred eEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcccccccCCceeEecCCCCeEEEEEccCCCEEE
Q 003822 487 NIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFL 566 (793)
Q Consensus 487 ~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~ll 566 (793)
+.+.+++. +...-...+.|. ++.++++.+.+|.|+++|+++++..... ......--.+++ .++.++
T Consensus 44 ~Vv~~~ph-d~~~ftqGL~~~--~~~Ly~stG~~g~v~~iD~~Tgkv~~~~---------l~~~~FgeGit~--~g~~Ly 109 (268)
T 3nok_A 44 HIIREYPH-ATNAFTQGLVFH--QGHFFESTGHQGTLRQLSLESAQPVWME---------RLGNIFAEGLAS--DGERLY 109 (268)
T ss_dssp EEEEEEEC-CTTCCEEEEEEE--TTEEEEEETTTTEEEECCSSCSSCSEEE---------ECTTCCEEEEEE--CSSCEE
T ss_pred EEEEEEcC-CCccccceEEEE--CCEEEEEcCCCCEEEEEECCCCcEEeEE---------CCCCcceeEEEE--eCCEEE
Confidence 34555542 334456789885 4667778888899999999998763222 111111233444 455555
Q ss_pred EEE-CCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEECCCCCccceEEccCCCCe----E
Q 003822 567 ASG-YSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGN----V 641 (793)
Q Consensus 567 a~g-~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~~~~----v 641 (793)
... .++.+.+||..+.+.+.++.- ...-..++ +++ ..|+.+..++.|.++|..+.+............. .
T Consensus 110 ~ltw~~~~v~V~D~~Tl~~~~ti~~--~~eGwGLt--~Dg-~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lN 184 (268)
T 3nok_A 110 QLTWTEGLLFTWSGMPPQRERTTRY--SGEGWGLC--YWN-GKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELIN 184 (268)
T ss_dssp EEESSSCEEEEEETTTTEEEEEEEC--SSCCCCEE--EET-TEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEE
T ss_pred EEEccCCEEEEEECCcCcEEEEEeC--CCceeEEe--cCC-CEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCccccccc
Confidence 555 589999999999999999983 23334455 456 4555556688999999998765544443322222 2
Q ss_pred EEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeec----------CCCCCcEEEEEeeCCCeEEEEE
Q 003822 642 MVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITA----------TGSSQNYTRSYYLNGRDYIVSG 701 (793)
Q Consensus 642 sv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~----------~~~~~v~s~afspdg~~~L~Sg 701 (793)
-+.|. +|+..+....++.|.+.|..+|+.+..+.... ........++|.|+++.+++||
T Consensus 185 eLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 185 ELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp EEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred ccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 36776 77544444468899999999999999887631 1223457799999888788877
No 247
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.45 E-value=7.8e-05 Score=86.72 Aligned_cols=202 Identities=11% Similarity=0.042 Sum_probs=124.6
Q ss_pred CCEEEEEeC-CCeEEEEEC-CCCeEEEEEeccCCCC--------C-EEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCc
Q 003822 466 SCLMVFGTL-DGEIVVVNH-ENENIVSYIPSFGAMN--------S-VLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS 534 (793)
Q Consensus 466 ~~~Lasgs~-DG~I~VWd~-~t~~~i~~l~~~~h~~--------~-V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~ 534 (793)
+..++.++. ++.|.-+|. .+|+.+.......... . -..++. .+..++.++.|+.|..+|..+++..
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~v~~~dg~l~alD~~tG~~~ 138 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY---GAGQIVKKQANGHLLALDAKTGKIN 138 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE---ETTEEEEECTTSEEEEEETTTCCEE
T ss_pred CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE---ECCEEEEEeCCCEEEEEECCCCCEE
Confidence 346777777 899999999 8999987765422110 0 012232 2567888889999999999998875
Q ss_pred ccccccCCceeEecCCCCeEEEEEccCCCEEEEEEC------CCcEEEEECCCCcEEEEEcccCCC--------------
Q 003822 535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY------SKNIALYDINSGRRLQVFADMHKE-------------- 594 (793)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~------Dg~I~IWDl~tg~~l~~~~~gh~~-------------- 594 (793)
.................++ + .++.+++++. ++.|..+|..+|+.+.++......
T Consensus 139 W~~~~~~~~~~~~~~~~P~----v--~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~ 212 (571)
T 2ad6_A 139 WEVEVCDPKVGSTLTQAPF----V--AKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANP 212 (571)
T ss_dssp EEEECCCGGGTCBCCSCCE----E--ETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCG
T ss_pred EEecCCCCCccceeccCCE----E--ECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccc
Confidence 4322111000000000111 1 2566776654 789999999999999887621100
Q ss_pred ----------------------Ce-EEEEEcCCCCcEEEEEeCC----------------CeEEEEECCCCCccceEEcc
Q 003822 595 ----------------------HI-NVVKFSNHSPSIFATSSFD----------------QDVKLWDLRQKPIQPCYTAS 635 (793)
Q Consensus 595 ----------------------~V-~sv~fspdg~~~LaTgs~D----------------g~IrIWDlrt~~~~~~~~l~ 635 (793)
.+ ..+++.+.. ..++.++.+ +.|..+|.++++..-.+...
T Consensus 213 ~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~-g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~ 291 (571)
T 2ad6_A 213 HYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKL-NLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKT 291 (571)
T ss_dssp GGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTT-TEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESS
T ss_pred cccccccccccCcccceecCCCCeeeeEEEcCCC-CeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCC
Confidence 00 135666665 355555432 35999999998654344433
Q ss_pred CCC--------CeEEEEEecCCC---EEEEEeCCCeEEEEEcCCCcEEEEEee
Q 003822 636 SSK--------GNVMVCFSPDDH---YLLVSAVDNEVRQLLAVDGRVHLNFGI 677 (793)
Q Consensus 636 ~~~--------~~vsv~fSpdg~---~Lasgs~Dg~I~IwDl~tg~~~~~l~~ 677 (793)
.+. .++.+...++|+ .++.++.+|.++++|..+|+.+..+..
T Consensus 292 ~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~ 344 (571)
T 2ad6_A 292 PHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKV 344 (571)
T ss_dssp TTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEES
T ss_pred CCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecc
Confidence 221 222233345784 677888999999999999998877654
No 248
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.43 E-value=5.7e-06 Score=95.17 Aligned_cols=237 Identities=8% Similarity=0.080 Sum_probs=153.6
Q ss_pred CCCEEEEEe-CCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEee-CCCCEEEEEE------------------cCCcEE
Q 003822 465 ISCLMVFGT-LDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLK-KYPSKLIAGS------------------DNGSLK 524 (793)
Q Consensus 465 d~~~Lasgs-~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~-~~g~~Lasgs------------------~DgtV~ 524 (793)
|++++.... .++.|.+.|+.+.+....+... ....+..+++.. +++.++++++ .++.+.
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip-~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt 178 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIP-NAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT 178 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECS-SCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEeeEEeCC-CCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence 556666555 4667999999999988855542 234588888755 7888888885 345788
Q ss_pred EEEcCCCCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEECC---------------------------------
Q 003822 525 LYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYS--------------------------------- 571 (793)
Q Consensus 525 vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~D--------------------------------- 571 (793)
+.|.++.+...+.. .. .....++++++++++++++.+
T Consensus 179 vID~~t~~v~~qI~--------Vg--g~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~G 248 (595)
T 1fwx_A 179 AVDADKWEVAWQVL--------VS--GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAG 248 (595)
T ss_dssp EEETTTTEEEEEEE--------ES--SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHT
T ss_pred EEECCCCeEEEEEE--------eC--CCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCC
Confidence 99998754422111 11 123455666777777777643
Q ss_pred -----CcEEEEECCC--CcE-EEEEcccCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEECCCCC----------ccceEE
Q 003822 572 -----KNIALYDINS--GRR-LQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKP----------IQPCYT 633 (793)
Q Consensus 572 -----g~I~IWDl~t--g~~-l~~~~~gh~~~V~sv~fspdg~~~LaTgs~Dg~IrIWDlrt~~----------~~~~~~ 633 (793)
+.|.+.|..+ ++. +..+. -.....++.++|||...++++..+.+|.++|+.+.+ ......
T Consensus 249 k~~~i~~V~VID~~~~~~~~~~~~Ip--vg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~ 326 (595)
T 1fwx_A 249 DYQELNGVKVVDGRKEASSLFTRYIP--IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAE 326 (595)
T ss_dssp CSEEETTEEEEECSGGGCCSSEEEEE--EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEEC
T ss_pred CeeEECcEEEEeCcccCCceeEEEEe--cCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEE
Confidence 2477888887 544 55554 223556899999995556666678999999998642 112345
Q ss_pred ccCCCCeEEEEEecCCCEEEEE-eCCCeEEEEEcCC----------CcEEEEEeeecC-CC-CCcEEEEEeeCCCeEEEE
Q 003822 634 ASSSKGNVMVCFSPDDHYLLVS-AVDNEVRQLLAVD----------GRVHLNFGITAT-GS-SQNYTRSYYLNGRDYIVS 700 (793)
Q Consensus 634 l~~~~~~vsv~fSpdg~~Lasg-s~Dg~I~IwDl~t----------g~~~~~l~~~~~-~~-~~v~s~afspdg~~~L~S 700 (793)
.....++..++|+|+| ++++. -.|+.|.+||+.+ .+.+.++..+.. ++ ........+|||+ +|++
T Consensus 327 v~vG~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk-~l~~ 404 (595)
T 1fwx_A 327 PELGLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATND-WLVC 404 (595)
T ss_dssp CBCCSCEEEEEECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSS-EEEE
T ss_pred cCCCCCcceEEECCCC-eEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCC-EEEE
Confidence 5556678889999999 55554 4699999999877 556666654211 10 0001123578999 7777
Q ss_pred EeC---CCc----------EEEEEEcCCCc
Q 003822 701 GSC---DEH----------VVRICCAQTGR 717 (793)
Q Consensus 701 gs~---Dg~----------II~IWDv~tg~ 717 (793)
+.. |.- - .++|+..++
T Consensus 405 ~Nk~skdr~~~~gp~~~~~~-ql~dis~~~ 433 (595)
T 1fwx_A 405 LSKFSKDRFLNVGPLKPEND-QLIDISGDK 433 (595)
T ss_dssp EESCCTTSSCCCCSSCCEEE-EEEECSSSS
T ss_pred cCCCCccccccCCCCCCCcc-eEEEcCCCc
Confidence 543 432 2 578886555
No 249
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.41 E-value=4.5e-05 Score=79.16 Aligned_cols=191 Identities=15% Similarity=0.132 Sum_probs=124.5
Q ss_pred eEEEEEccCCCEEEEEECCC--cEEEEECCCCcEEEEEcccCCCCe--EEEEEcCCCCcEEEEEeCCCeEEEEECCCCCc
Q 003822 553 LTSVHVNSMDELFLASGYSK--NIALYDINSGRRLQVFADMHKEHI--NVVKFSNHSPSIFATSSFDQDVKLWDLRQKPI 628 (793)
Q Consensus 553 V~sv~~s~~~~~lla~g~Dg--~I~IWDl~tg~~l~~~~~gh~~~V--~sv~fspdg~~~LaTgs~Dg~IrIWDlrt~~~ 628 (793)
...+.|+ ++..+.++|.+| .|+++|+.+++.+..+.- .... -.++. ++..+++..-.++.+.+||..+.+.
T Consensus 45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l--~~~~FgeGit~--~g~~ly~ltw~~~~v~v~D~~t~~~ 119 (262)
T 3nol_A 45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIEL--GKRYFGEGISD--WKDKIVGLTWKNGLGFVWNIRNLRQ 119 (262)
T ss_dssp EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEEC--CTTCCEEEEEE--ETTEEEEEESSSSEEEEEETTTCCE
T ss_pred cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEec--CCccceeEEEE--eCCEEEEEEeeCCEEEEEECccCcE
Confidence 5788886 555555556655 899999999999998873 2333 33454 3435666666689999999999866
Q ss_pred cceEEccCCCCeEEEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCC--CCcEEEEEeeCCCeEEEEEeCCCc
Q 003822 629 QPCYTASSSKGNVMVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGS--SQNYTRSYYLNGRDYIVSGSCDEH 706 (793)
Q Consensus 629 ~~~~~l~~~~~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~--~~v~s~afspdg~~~L~Sgs~Dg~ 706 (793)
...+...+. + ..++++|+.|+.+..++.|.++|..+.+.+.++.....+. .....+.|. +|. ..+..-.+..
T Consensus 120 ~~ti~~~~e-G---~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~-lyan~w~~~~ 193 (262)
T 3nol_A 120 VRSFNYDGE-G---WGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGE-IFANVWQTNK 193 (262)
T ss_dssp EEEEECSSC-C---CCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTE-EEEEETTSSE
T ss_pred EEEEECCCC-c---eEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCE-EEEEEccCCe
Confidence 655555432 2 2344678888887778899999999999988887643221 222345665 664 4444445667
Q ss_pred EEEEEEcCCCcEEEeeeecCCCCCccceeeeccCCccccCCccEEEEEEcCCCCceee
Q 003822 707 VVRICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKSEIV 764 (793)
Q Consensus 707 II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~~~~iv 764 (793)
| .+.|.++|+.+..+.+.+-.. .. . +...-....+++||+|+....++
T Consensus 194 I-~vIDp~tG~V~~~Id~~~L~~--~~-----~--~~~~~~~vlNGIA~dp~~~~lfV 241 (262)
T 3nol_A 194 I-VRIDPETGKVTGIIDLNGILA--EA-----G--PLPSPIDVLNGIAWDKEHHRLFV 241 (262)
T ss_dssp E-EEECTTTCBEEEEEECTTGGG--GS-----C--SCCSSCCCEEEEEEETTTTEEEE
T ss_pred E-EEEECCCCcEEEEEECCcCcc--cc-----c--cccCcCCceEEEEEcCCCCEEEE
Confidence 7 999999999999555443210 00 0 00111236789999996544333
No 250
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.35 E-value=5.3e-06 Score=87.84 Aligned_cols=264 Identities=13% Similarity=0.074 Sum_probs=152.7
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcc
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSI 535 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~ 535 (793)
+.++...+ ++ .+..|+.+ |..+|. +++....+.. ........... +..+..++.++.|..+|.. ++...
T Consensus 62 ~~~~~~~~-~g-~l~v~t~~--l~~~d~-~g~~~~~~~~--~~~~~~~~~~~---~~~l~v~t~~~~l~~~d~~-g~~~~ 130 (330)
T 3hxj_A 62 ECRPSIGK-DG-TIYFGSDK--VYAINP-DGTEKWRFDT--KKAIVSDFTIF---EDILYVTSMDGHLYAINTD-GTEKW 130 (330)
T ss_dssp EECCEETT-TT-EECCSSCE--EEEECC-CGGGGGGSCC-------CCEEEE---TTEEEEECTTSEEEEECTT-SCEEE
T ss_pred ccceEEec-CC-cEEEecCc--EEEECC-CCcEEEEEEC--CCCcccCceEE---CCEEEEEecCCEEEEEcCC-CCEEE
Confidence 45555655 44 45555544 888886 4543322221 11112222322 5577888888999999987 54322
Q ss_pred cccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeCC
Q 003822 536 RGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFD 615 (793)
Q Consensus 536 ~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~D 615 (793)
.... ....+.++... .++.+++++.++.|..||.. ++....+. .....+.++...+++ .+++ ++
T Consensus 131 ~~~~---------~~~~~~~~~~~-~~g~l~vgt~~~~l~~~d~~-g~~~~~~~-~~~~~~~~~~~d~~g-~l~v-~t-- 194 (330)
T 3hxj_A 131 RFKT---------KKAIYATPIVS-EDGTIYVGSNDNYLYAINPD-GTEKWRFK-TNDAITSAASIGKDG-TIYF-GS-- 194 (330)
T ss_dssp EEEC---------SSCCCSCCEEC-TTSCEEEECTTSEEEEECTT-SCEEEEEE-CSSCCCSCCEECTTC-CEEE-ES--
T ss_pred EEcC---------CCceeeeeEEc-CCCEEEEEcCCCEEEEECCC-CCEeEEEe-cCCCceeeeEEcCCC-EEEE-Ee--
Confidence 1111 11223344443 35567777778999999999 88877776 355567777887777 4444 44
Q ss_pred CeEEEEECCCCCccceEEccCCCC-eEEEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCC
Q 003822 616 QDVKLWDLRQKPIQPCYTASSSKG-NVMVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNG 694 (793)
Q Consensus 616 g~IrIWDlrt~~~~~~~~l~~~~~-~vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg 694 (793)
+.|..|| .++.. ......... +.++...++|. |.+++.++.+..+| .+++.+..+.. ...........++|
T Consensus 195 ~~l~~~d-~~g~~--~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~-~~g~~~~~~~~---~~~~~~~~~~~~~g 266 (330)
T 3hxj_A 195 DKVYAIN-PDGTE--KWNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAIN-PDGTEKWRFKT---GKRIESSPVIGNTD 266 (330)
T ss_dssp SSEEEEC-TTSCE--EEEECCSSCCCSCCEECTTSC-EEEEETTTEEEEEC-TTSCEEEEEEC---SSCCCSCCEECTTS
T ss_pred CEEEEEC-CCCcE--EEEEccCCcceeceEECCCCe-EEEEcCCCeEEEEC-CCCCEeEEeeC---CCCccccceEcCCC
Confidence 7799999 55532 333332222 33477787776 56677788888887 46666655542 22222234444455
Q ss_pred CeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCCCCccceeeeccCCccccCCccEEEEEEcCCCCceeeEeeEEEeCCC
Q 003822 695 RDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKSEIVKVNLLASTDH 774 (793)
Q Consensus 695 ~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~~~~iv~~~ltaS~Dg 774 (793)
.|..++.+|.+ ..+|. +|+.+..+.+.+ ..+.++...++ ..++ +++.+|
T Consensus 267 --~l~v~t~~ggl-~~~d~-~g~~~~~~~~~~---------------------~~~~~~~~d~~--g~l~----~gt~~G 315 (330)
T 3hxj_A 267 --TIYFGSYDGHL-YAINP-DGTEKWNFETGS---------------------WIIATPVIDEN--GTIY----FGTRNG 315 (330)
T ss_dssp --CEEEECTTCEE-EEECT-TSCEEEEEECSS---------------------CCCSCCEECTT--CCEE----EECTTS
T ss_pred --eEEEecCCCCE-EEECC-CCcEEEEEEcCC---------------------ccccceEEcCC--CEEE----EEcCCC
Confidence 47778888888 89995 788777322211 12333444443 2344 899999
Q ss_pred cEEEEcCCCCC
Q 003822 775 CDKECSHGQHS 785 (793)
Q Consensus 775 ~VkvW~~~~~~ 785 (793)
.+++...+...
T Consensus 316 ~~~~~~~~~~~ 326 (330)
T 3hxj_A 316 KFYALFNLEHH 326 (330)
T ss_dssp CEEEEEC----
T ss_pred eEEEEeccccc
Confidence 99988765544
No 251
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.34 E-value=0.00011 Score=75.39 Aligned_cols=196 Identities=14% Similarity=0.093 Sum_probs=125.0
Q ss_pred CCeEEEEEccCCCEEEEEECC--CcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEECCCCCc
Q 003822 551 DQLTSVHVNSMDELFLASGYS--KNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPI 628 (793)
Q Consensus 551 ~~V~sv~~s~~~~~lla~g~D--g~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~Dg~IrIWDlrt~~~ 628 (793)
.....+.|+. +..+.++|.. ..|+.+|+.+++.+..+.-+....--.++.. +..+++..-.++.+.+||..+.+.
T Consensus 21 ~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~~v~v~D~~tl~~ 97 (243)
T 3mbr_X 21 AFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNHEGFVYDLATLTP 97 (243)
T ss_dssp CCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTTEE
T ss_pred cccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCCEEEEEECCcCcE
Confidence 4577899854 4444555554 5899999999999998873222122344544 435666666789999999999865
Q ss_pred cceEEccCCCCeEEEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCC--CCcEEEEEeeCCCeEEEEEeCCCc
Q 003822 629 QPCYTASSSKGNVMVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGS--SQNYTRSYYLNGRDYIVSGSCDEH 706 (793)
Q Consensus 629 ~~~~~l~~~~~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~--~~v~s~afspdg~~~L~Sgs~Dg~ 706 (793)
...+...+. + . .+.++++.|+++..++.|.++|..+.+.+.++.....+. .....+.|. +|. ..+..-.+..
T Consensus 98 ~~ti~~~~~-G-w--glt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~-lyanvw~s~~ 171 (243)
T 3mbr_X 98 RARFRYPGE-G-W--ALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGE-LLANVWLTSR 171 (243)
T ss_dssp EEEEECSSC-C-C--EEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE-EEEEETTTTE
T ss_pred EEEEeCCCC-c-e--EEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCE-EEEEECCCCe
Confidence 555554432 2 2 334678888888889999999999999988887643221 233345544 554 4444434557
Q ss_pred EEEEEEcCCCcEEEeeeecCCCCCccceeeeccCCccccCCccEEEEEEcCCCCceee
Q 003822 707 VVRICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKSEIV 764 (793)
Q Consensus 707 II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~~~~iv 764 (793)
| .+.|..+|+.+..+.+.+-...... . . ..-....+++|++|.....++
T Consensus 172 I-~vIDp~tG~V~~~idl~~l~~~~~~----~-~---~~~~~vlNGIA~d~~~~~lfV 220 (243)
T 3mbr_X 172 I-ARIDPASGKVVAWIDLQALVPDADA----L-T---DSTNDVLNGIAFDAEHDRLFV 220 (243)
T ss_dssp E-EEECTTTCBEEEEEECGGGSTTTTS----C-C---CTTSSCEEEEEEETTTTEEEE
T ss_pred E-EEEECCCCCEEEEEECCcCcccccc----c-c---CCcCCceEEEEEcCCCCEEEE
Confidence 7 9999999999995555542100000 0 0 011236889999996544433
No 252
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.34 E-value=0.00013 Score=85.09 Aligned_cols=248 Identities=13% Similarity=0.112 Sum_probs=152.2
Q ss_pred EEEEEeCCCeEEEEECCCCeEEEEEeccCCCC--CEEE-EEEeeCCCCEEEEEE------cCCcEEEEEcCCCCCccccc
Q 003822 468 LMVFGTLDGEIVVVNHENENIVSYIPSFGAMN--SVLG-LCWLKKYPSKLIAGS------DNGSLKLYDIRHMPPSIRGM 538 (793)
Q Consensus 468 ~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~--~V~s-v~fs~~~g~~Lasgs------~DgtV~vWDl~~~~~~~~~~ 538 (793)
+++.++.|+.|..+|..+|+.+.......+.. .+.+ ... .+ ..+++++ .+|.|+.+|.++++...+..
T Consensus 123 rV~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v--~~-g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~ 199 (599)
T 1w6s_A 123 LILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYV--VK-DKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAY 199 (599)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE--ET-TEEEECCBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred EEEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEE--EC-CEEEEEecccccCCCCeEEEEECCCCcEEEEEc
Confidence 38888899999999999999987765432211 1211 111 13 3555554 37999999999988754332
Q ss_pred ccCCce----------------------eE-----ecC-CCCe-EEEEEccCCCEEEEEECC----------------Cc
Q 003822 539 HYGAGT----------------------VT-----FDE-FDQL-TSVHVNSMDELFLASGYS----------------KN 573 (793)
Q Consensus 539 ~~~~~~----------------------~~-----~~~-~~~V-~sv~~s~~~~~lla~g~D----------------g~ 573 (793)
...... .+ +.. ...+ ..+++.+..+.++.+..+ +.
T Consensus 200 ~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~s 279 (599)
T 1w6s_A 200 ATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMT 279 (599)
T ss_dssp SSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSE
T ss_pred CCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccce
Confidence 211100 00 000 0011 134455677777777654 47
Q ss_pred EEEEECCCCcEEEEEcccCC---------CCeEEEEEc-CCCC--cEEEEEeCCCeEEEEECCCCCccceEEccC-----
Q 003822 574 IALYDINSGRRLQVFADMHK---------EHINVVKFS-NHSP--SIFATSSFDQDVKLWDLRQKPIQPCYTASS----- 636 (793)
Q Consensus 574 I~IWDl~tg~~l~~~~~gh~---------~~V~sv~fs-pdg~--~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~----- 636 (793)
|..+|..+|+.+..++..+. .++. +... .+|. ..++.++.+|.+.++|.++++..-...+..
T Consensus 280 v~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~ 358 (599)
T 1w6s_A 280 IFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVF 358 (599)
T ss_dssp EEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSE
T ss_pred EEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccc
Confidence 99999999999988874332 1121 2222 3452 367778899999999999885432222111
Q ss_pred ------C---------------------------CCeEEEEEecCCCEEEEEe---------------------------
Q 003822 637 ------S---------------------------KGNVMVCFSPDDHYLLVSA--------------------------- 656 (793)
Q Consensus 637 ------~---------------------------~~~vsv~fSpdg~~Lasgs--------------------------- 656 (793)
. ...-.++++|+...+++..
T Consensus 359 ~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~ 438 (599)
T 1w6s_A 359 KSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNM 438 (599)
T ss_dssp EEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEE
T ss_pred cccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceeccccee
Confidence 0 0011367788776665532
Q ss_pred ------------CCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEEeeee
Q 003822 657 ------------VDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRLRDISL 724 (793)
Q Consensus 657 ------------~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L 724 (793)
..|.+..||+.+|+.+-+..... ....-.....+. +++.|+.|+.+ +.||.++|+.+.++.+
T Consensus 439 ~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~----~~~~g~~~tagg-~vf~gt~dg~l-~A~D~~tG~~lW~~~l 512 (599)
T 1w6s_A 439 YPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERF----AVWGGTMATAGD-LVFYGTLDGYL-KARDSDTGDLLWKFKI 512 (599)
T ss_dssp EECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESS----CCCSBCEEETTT-EEEEECTTSEE-EEEETTTCCEEEEEEC
T ss_pred ccCCcCCcccCCCcCeEEEEECCCCCEEeEecCCC----CccCcceEecCC-EEEEECCCCeE-EEEECCCCCEEEEeeC
Confidence 34789999999999877665321 111112334555 77889999999 9999999999995544
Q ss_pred c
Q 003822 725 E 725 (793)
Q Consensus 725 ~ 725 (793)
.
T Consensus 513 ~ 513 (599)
T 1w6s_A 513 P 513 (599)
T ss_dssp S
T ss_pred C
Confidence 3
No 253
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.33 E-value=5.4e-05 Score=78.63 Aligned_cols=195 Identities=9% Similarity=-0.002 Sum_probs=126.3
Q ss_pred CCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEECCCCCccc
Q 003822 551 DQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQP 630 (793)
Q Consensus 551 ~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~Dg~IrIWDlrt~~~~~ 630 (793)
.....+.|+ .+..++++|.+|.|+++|+.+++.+..+. .....--.+++. +..+++..-.++.+.+||..+.+...
T Consensus 55 ~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~l-~~~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~Tl~~~~ 130 (268)
T 3nok_A 55 AFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWMER-LGNIFAEGLASD--GERLYQLTWTEGLLFTWSGMPPQRER 130 (268)
T ss_dssp CCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEEE-CTTCCEEEEEEC--SSCEEEEESSSCEEEEEETTTTEEEE
T ss_pred cccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEEC-CCCcceeEEEEe--CCEEEEEEccCCEEEEEECCcCcEEE
Confidence 335788884 34455555678899999999999887762 222222345554 43566666678999999999986555
Q ss_pred eEEccCCCCeEEEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCC--CCcEEEEEeeCCCeEEEEEeCCCcEE
Q 003822 631 CYTASSSKGNVMVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGS--SQNYTRSYYLNGRDYIVSGSCDEHVV 708 (793)
Q Consensus 631 ~~~l~~~~~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~--~~v~s~afspdg~~~L~Sgs~Dg~II 708 (793)
.+...+. + ...+++|+.|+.+..++.|.++|..+.+.+.++.....+. .....+.|. +|. ..+..-.+..|
T Consensus 131 ti~~~~e-G---wGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~-lyanvw~s~~I- 203 (268)
T 3nok_A 131 TTRYSGE-G---WGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGV-IYANIWHSSDV- 203 (268)
T ss_dssp EEECSSC-C---CCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE-EEEEETTCSEE-
T ss_pred EEeCCCc-e---eEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCE-EEEEECCCCeE-
Confidence 5554432 2 2334678888888889999999999999988887644222 133455665 664 44444456677
Q ss_pred EEEEcCCCcEEEeeeecCCCCCccceeeeccCCccccCCccEEEEEEcCCCCceee
Q 003822 709 RICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKSEIV 764 (793)
Q Consensus 709 ~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~~~~iv 764 (793)
.+.|.++|+.+..+.+.+-.. ..... ...-....+++||+|+....++
T Consensus 204 ~vIDp~TG~V~~~Idl~~L~~-------~~~~~-~~~~~~vlNGIA~dp~~~rlfV 251 (268)
T 3nok_A 204 LEIDPATGTVVGVIDASALTR-------AVAGQ-VTNPEAVLNGIAVEPGSGRIFM 251 (268)
T ss_dssp EEECTTTCBEEEEEECHHHHH-------HHTTT-CCCTTCCEEEEEECTTTCCEEE
T ss_pred EEEeCCCCcEEEEEECCCCcc-------ccccc-ccCcCCceEEEEEcCCCCEEEE
Confidence 999999999999555543110 00000 0111236789999997554444
No 254
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.31 E-value=8.9e-05 Score=86.44 Aligned_cols=252 Identities=15% Similarity=0.129 Sum_probs=152.8
Q ss_pred CCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCC--CEE-EEEEeeC--CCC-EEEEEE------cCCcEEEEEcCCCCC
Q 003822 466 SCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMN--SVL-GLCWLKK--YPS-KLIAGS------DNGSLKLYDIRHMPP 533 (793)
Q Consensus 466 ~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~--~V~-sv~fs~~--~g~-~Lasgs------~DgtV~vWDl~~~~~ 533 (793)
+..++.++.|+.|..+|..+|+.+.......+.. .+. ....... +++ .+++++ .++.|.-+|..+++.
T Consensus 117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~ 196 (582)
T 1flg_A 117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEE 196 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCE
Confidence 3578888999999999999999987766433211 111 0011111 223 566654 378999999999887
Q ss_pred cccccccCCce----------------e--------------Eec--CCCCeEEEEEccCCCEEEEEEC-----------
Q 003822 534 SIRGMHYGAGT----------------V--------------TFD--EFDQLTSVHVNSMDELFLASGY----------- 570 (793)
Q Consensus 534 ~~~~~~~~~~~----------------~--------------~~~--~~~~V~sv~~s~~~~~lla~g~----------- 570 (793)
........... . .+. ....-..+++.+..+.++++..
T Consensus 197 ~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~ 276 (582)
T 1flg_A 197 IWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWART 276 (582)
T ss_dssp EEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGS
T ss_pred EeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccc
Confidence 55332110000 0 000 0000123456667777777653
Q ss_pred ---------C----CcEEEEECCCCcEEEEEccc-CC--------CCeEEEEEc-CCCC--cEEEEEeCCCeEEEEECCC
Q 003822 571 ---------S----KNIALYDINSGRRLQVFADM-HK--------EHINVVKFS-NHSP--SIFATSSFDQDVKLWDLRQ 625 (793)
Q Consensus 571 ---------D----g~I~IWDl~tg~~l~~~~~g-h~--------~~V~sv~fs-pdg~--~~LaTgs~Dg~IrIWDlrt 625 (793)
| +.|..+|..+|+.+..++.. |. .++. +... .+|. ..++.++.+|.++++|.++
T Consensus 277 ~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~t 355 (582)
T 1flg_A 277 AKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSN 355 (582)
T ss_dssp CTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTT
T ss_pred cCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCC
Confidence 2 58999999999999988632 21 1221 2221 3552 3788899999999999998
Q ss_pred CCccceEEccC--------------------------------CCC------------eEEEEEecCCCEEEEEe-----
Q 003822 626 KPIQPCYTASS--------------------------------SKG------------NVMVCFSPDDHYLLVSA----- 656 (793)
Q Consensus 626 ~~~~~~~~l~~--------------------------------~~~------------~vsv~fSpdg~~Lasgs----- 656 (793)
++..-...... ... .-.++++|+...+++..
T Consensus 356 G~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~ 435 (582)
T 1flg_A 356 GKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKE 435 (582)
T ss_dssp CCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEE
T ss_pred CCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcce
Confidence 75432222211 000 01246777655555533
Q ss_pred ----------------------------CCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCCCeEEEEEeCCCcEE
Q 003822 657 ----------------------------VDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNGRDYIVSGSCDEHVV 708 (793)
Q Consensus 657 ----------------------------~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II 708 (793)
.+|.|..||+.+|+.+-+...... .........+. +++.|+.||.+
T Consensus 436 ~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~----~~~g~~~tagg-lvf~g~~dg~l- 509 (582)
T 1flg_A 436 DYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLP----LWAGVLATAGN-LVFTGTGDGYF- 509 (582)
T ss_dssp EEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSC----CCSCCEEETTT-EEEEECTTSEE-
T ss_pred eeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCCC----CcccceEeCCC-EEEEECCCCcE-
Confidence 257899999999998776653221 11112223455 78889999999
Q ss_pred EEEEcCCCcEEEeeee
Q 003822 709 RICCAQTGRRLRDISL 724 (793)
Q Consensus 709 ~IWDv~tg~~l~~~~L 724 (793)
+.||.++|+.+.++.+
T Consensus 510 ~A~D~~tG~~lW~~~~ 525 (582)
T 1flg_A 510 KAFDAKSGKELWKFQT 525 (582)
T ss_dssp EEEETTTCCEEEEEEC
T ss_pred EEEECCCCCEEEEecC
Confidence 9999999999994444
No 255
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.28 E-value=0.00066 Score=79.25 Aligned_cols=204 Identities=9% Similarity=0.028 Sum_probs=126.3
Q ss_pred CCEEEEEeC-CCeEEEEEC-CCCeEEEEEeccCCCC---------CEEEEEEeeCCCCE----EEEEEcCCcEEEEEcCC
Q 003822 466 SCLMVFGTL-DGEIVVVNH-ENENIVSYIPSFGAMN---------SVLGLCWLKKYPSK----LIAGSDNGSLKLYDIRH 530 (793)
Q Consensus 466 ~~~Lasgs~-DG~I~VWd~-~t~~~i~~l~~~~h~~---------~V~sv~fs~~~g~~----Lasgs~DgtV~vWDl~~ 530 (793)
+..+++++. ++.|.-+|. .+|+.+-......... ....+++.| .+.. ++.++.|+.|..+|..+
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p-~~g~~~~rV~v~t~dg~l~AlDa~T 140 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWP-GDGKTPALILKTQLDGNVAALNAET 140 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEEC-CCSSSCCEEEEECTTSEEEEEETTT
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEe-cCCcceeEEEEEcCCCEEEEEECCC
Confidence 356777777 899999999 8999987775422110 012234422 2333 88888999999999999
Q ss_pred CCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEEC------CCcEEEEECCCCcEEEEEcccCCC----------
Q 003822 531 MPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY------SKNIALYDINSGRRLQVFADMHKE---------- 594 (793)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~------Dg~I~IWDl~tg~~l~~~~~gh~~---------- 594 (793)
++...................++ + .++.+++++. +|.|+.+|..+|+.+.++......
T Consensus 141 G~~~W~~~~~~~~~~~~~~ssP~----v--~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~ 214 (599)
T 1w6s_A 141 GETVWKVENSDIKVGSTLTIAPY----V--VKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFN 214 (599)
T ss_dssp CCEEEEEECCCGGGTCBCCSCCE----E--ETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTT
T ss_pred CCEEEeecCCCCCccceeecCCE----E--ECCEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccccc
Confidence 88754432111000000000111 1 2456666653 799999999999999887632110
Q ss_pred --------------------------Ce-EEEEEcCCCCcEEEEEeCC----------------CeEEEEECCCCCccce
Q 003822 595 --------------------------HI-NVVKFSNHSPSIFATSSFD----------------QDVKLWDLRQKPIQPC 631 (793)
Q Consensus 595 --------------------------~V-~sv~fspdg~~~LaTgs~D----------------g~IrIWDlrt~~~~~~ 631 (793)
.+ ...++.+.. .+++.++.+ +.|.-+|.++++..=.
T Consensus 215 ~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~-g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~ 293 (599)
T 1w6s_A 215 IKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGT-NLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFG 293 (599)
T ss_dssp TTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTT-TEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEE
T ss_pred cccccccccccccccCCCcceecCCCccccceeEeCCC-CEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeE
Confidence 00 134566666 466666554 3799999999865544
Q ss_pred EEccCCC--------CeEEEEEe-cCC---CEEEEEeCCCeEEEEEcCCCcEEEEEee
Q 003822 632 YTASSSK--------GNVMVCFS-PDD---HYLLVSAVDNEVRQLLAVDGRVHLNFGI 677 (793)
Q Consensus 632 ~~l~~~~--------~~vsv~fS-pdg---~~Lasgs~Dg~I~IwDl~tg~~~~~l~~ 677 (793)
+....+. .++-+... .+| +.++.++.+|.++++|..+|+.+.....
T Consensus 294 ~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~ 351 (599)
T 1w6s_A 294 YQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKL 351 (599)
T ss_dssp EESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEES
T ss_pred eecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccc
Confidence 4444332 12223332 578 5677788999999999999999877653
No 256
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.23 E-value=0.00054 Score=72.48 Aligned_cols=227 Identities=11% Similarity=0.037 Sum_probs=134.0
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCC--cEEEEEcCCCCC
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNG--SLKLYDIRHMPP 533 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~Dg--tV~vWDl~~~~~ 533 (793)
+..++|+| ++.++++-..++.|..||... +....+.. ...+..+++. ++++++++..... .|..+|..+++.
T Consensus 34 pegia~~~-~g~lyv~d~~~~~I~~~d~~g-~~~~~~~~---~~~p~gia~~-~dG~l~vad~~~~~~~v~~~d~~~g~~ 107 (306)
T 2p4o_A 34 LENLASAP-DGTIFVTNHEVGEIVSITPDG-NQQIHATV---EGKVSGLAFT-SNGDLVATGWNADSIPVVSLVKSDGTV 107 (306)
T ss_dssp EEEEEECT-TSCEEEEETTTTEEEEECTTC-CEEEEEEC---SSEEEEEEEC-TTSCEEEEEECTTSCEEEEEECTTSCE
T ss_pred cceEEECC-CCCEEEEeCCCCeEEEECCCC-ceEEEEeC---CCCceeEEEc-CCCcEEEEeccCCcceEEEEcCCCCeE
Confidence 78899999 888777777889999999875 44444432 2468889986 6787655554332 366667666543
Q ss_pred cccccccCCceeEecCCCCeEEEEEccCCCEEEEEE-CCCcEEEEECCCCcE-EEEEc--------ccCCCCeEEEEEcC
Q 003822 534 SIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASG-YSKNIALYDINSGRR-LQVFA--------DMHKEHINVVKFSN 603 (793)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g-~Dg~I~IWDl~tg~~-l~~~~--------~gh~~~V~sv~fsp 603 (793)
.. .. ..........++.. .++.++++. .++.|+++|..+++. +.... ...-...+.+ +|
T Consensus 108 ~~--~~------~~~~~~~~~g~~~~-~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~ 176 (306)
T 2p4o_A 108 ET--LL------TLPDAIFLNGITPL-SDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KR 176 (306)
T ss_dssp EE--EE------ECTTCSCEEEEEES-SSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EE
T ss_pred EE--EE------eCCCccccCccccc-CCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--Cc
Confidence 11 10 00111223444443 455555555 478999999876532 22111 0111245566 77
Q ss_pred CCCcEEEEEeCCCeEEEEECCC-CCccceEEccCCCCeEEEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCC
Q 003822 604 HSPSIFATSSFDQDVKLWDLRQ-KPIQPCYTASSSKGNVMVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGS 682 (793)
Q Consensus 604 dg~~~LaTgs~Dg~IrIWDlrt-~~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~ 682 (793)
++..++++-...+.|..||+.. +.......+.....+-.++++++|++.++....+.|.++|.. |+....... ....
T Consensus 177 dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~-~~~~ 254 (306)
T 2p4o_A 177 FGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQA-EQGV 254 (306)
T ss_dssp ETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECG-GGTC
T ss_pred CCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEeccCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeec-cccc
Confidence 8755666667788999999875 321111111101123348999999876666667899999964 665332222 2233
Q ss_pred CCcEEEEEe---eCCCeEEEEE
Q 003822 683 SQNYTRSYY---LNGRDYIVSG 701 (793)
Q Consensus 683 ~~v~s~afs---pdg~~~L~Sg 701 (793)
.....++|. ++++.++++.
T Consensus 255 ~~p~~~a~~g~~~d~~~LyVt~ 276 (306)
T 2p4o_A 255 IGSTAVAFGQTEGDCTAIYVVT 276 (306)
T ss_dssp TTEEEEEECCSTTTTTEEEEEE
T ss_pred CCceEEEEecccCCCCEEEEEC
Confidence 567888888 7776344443
No 257
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.22 E-value=0.0028 Score=67.54 Aligned_cols=235 Identities=9% Similarity=0.045 Sum_probs=143.9
Q ss_pred EEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCC---CCcccccccCCce
Q 003822 468 LMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHM---PPSIRGMHYGAGT 544 (793)
Q Consensus 468 ~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~---~~~~~~~~~~~~~ 544 (793)
+|+.+. ...|+..|+.+.+....+. ....+.+++|.+.++..+++-...+.|..+++... .... .
T Consensus 3 ~ll~~~-~~~I~~i~~~~~~~~~~~~---~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~--------~ 70 (316)
T 1ijq_A 3 YLFFTN-RHEVRKMTLDRSEYTSLIP---NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYD--------T 70 (316)
T ss_dssp EEEEEC-BSSEEEEETTSCCCEEEEC---SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CE--------E
T ss_pred EEEEEC-CCeEEEEECCCcceEehhc---CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccE--------E
Confidence 344444 3569999998876655543 23568899997434445555556789999998762 1100 0
Q ss_pred eEecCCCCeEEEEEccCCCEEEEEE-CCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeCC-CeEEEEE
Q 003822 545 VTFDEFDQLTSVHVNSMDELFLASG-YSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFD-QDVKLWD 622 (793)
Q Consensus 545 ~~~~~~~~V~sv~~s~~~~~lla~g-~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~D-g~IrIWD 622 (793)
+.......+.++++.+.++.++.+. ..+.|.++|+........+. ........++++|.++.++++.... +.|..++
T Consensus 71 ~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~-~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~ 149 (316)
T 1ijq_A 71 VISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR-ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGG 149 (316)
T ss_dssp EECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEE-CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred EEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEE-CCCCCcceEEeCCCCCEEEEEccCCCCeEEEEc
Confidence 0001123457888877777776665 57899999987544333333 2345678999999764666665444 7898888
Q ss_pred CCCCCccceEEccCCCCeEEEEEecCCCEEEEEe-CCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCCCeEEEEE
Q 003822 623 LRQKPIQPCYTASSSKGNVMVCFSPDDHYLLVSA-VDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNGRDYIVSG 701 (793)
Q Consensus 623 lrt~~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs-~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sg 701 (793)
+..... .......-..+..++++|++..|+.+. ..+.|..+|+.... ...+............+++. .+. ++++-
T Consensus 150 ~dG~~~-~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~-~~~~~~~~~~~~~P~giav~-~~~-ly~~d 225 (316)
T 1ijq_A 150 LNGVDI-YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVF-EDK-VFWTD 225 (316)
T ss_dssp TTSCCE-EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEEECTTTTSSEEEEEEE-TTE-EEEEE
T ss_pred CCCCCe-EEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCc-eEEEeecCCccCCcEEEEEE-CCE-EEEEE
Confidence 865432 222222233455799999887777665 45789999986433 23332111122345666664 333 56666
Q ss_pred eCCCcEEEEEEcCCCcEEE
Q 003822 702 SCDEHVVRICCAQTGRRLR 720 (793)
Q Consensus 702 s~Dg~II~IWDv~tg~~l~ 720 (793)
...+.| ..++..+|+.+.
T Consensus 226 ~~~~~V-~~~~~~~g~~~~ 243 (316)
T 1ijq_A 226 IINEAI-FSANRLTGSDVN 243 (316)
T ss_dssp TTTTEE-EEEETTTCCCCE
T ss_pred CCCCeE-EEEeCCCCcceE
Confidence 666777 888988888776
No 258
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.20 E-value=0.00037 Score=72.29 Aligned_cols=204 Identities=8% Similarity=0.067 Sum_probs=135.1
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcc
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSI 535 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~ 535 (793)
+..++|+|.++.++++...++.|...|.. ++.+..++..+. ...-.|++. .++.++++.-.++.+.++++.......
T Consensus 29 lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~-~D~EGIa~~-~~g~~~vs~E~~~~l~~~~v~~~~~i~ 105 (255)
T 3qqz_A 29 ISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFV-KDLETIEYI-GDNQFVISDERDYAIYVISLTPNSEVK 105 (255)
T ss_dssp EEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSC-SSEEEEEEC-STTEEEEEETTTTEEEEEEECTTCCEE
T ss_pred cceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCC-CChHHeEEe-CCCEEEEEECCCCcEEEEEcCCCCeee
Confidence 88999999555566667888999999998 888888876443 567888886 566555655567789999887654311
Q ss_pred --cccccCCceeEecCCCCeEEEEEccCCCEEEEEECCC--cEEEEEC-CCCcEEEEEc------ccCCCCeEEEEEcCC
Q 003822 536 --RGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSK--NIALYDI-NSGRRLQVFA------DMHKEHINVVKFSNH 604 (793)
Q Consensus 536 --~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg--~I~IWDl-~tg~~l~~~~------~gh~~~V~sv~fspd 604 (793)
.... .............++++.|.++.++++.... .|+.|+- ..+..+..+. ..+...+.+++++|.
T Consensus 106 ~~~~~~--~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~ 183 (255)
T 3qqz_A 106 ILKKIK--IPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQ 183 (255)
T ss_dssp EEEEEE--CCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETT
T ss_pred eeeeec--cccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCC
Confidence 1110 0000112234578999999998888877543 4555551 1122222221 123446789999999
Q ss_pred CCcEEEEEeCCCeEEEEECCCCCccceEEccCC--------CCeEEEEEecCCCEEEEEeCCCeEEEEEc
Q 003822 605 SPSIFATSSFDQDVKLWDLRQKPIQPCYTASSS--------KGNVMVCFSPDDHYLLVSAVDNEVRQLLA 666 (793)
Q Consensus 605 g~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~--------~~~vsv~fSpdg~~Lasgs~Dg~I~IwDl 666 (793)
.+++++.+...+.+.++|.... ......+... ..+-.|+|.|+|+ |++.+.-+.+++|..
T Consensus 184 tg~lliLS~~s~~L~~~d~~g~-~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIvsE~n~~y~f~~ 251 (255)
T 3qqz_A 184 KNTLLVLSHESRALQEVTLVGE-VIGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIVSEPNRFYRFTP 251 (255)
T ss_dssp TTEEEEEETTTTEEEEECTTCC-EEEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEEEETTTEEEEEEC
T ss_pred CCeEEEEECCCCeEEEEcCCCC-EEEEEEcCCccCCcccccCCCCeeEECCCCC-EEEEcCCceEEEEEe
Confidence 8788888888899999997753 4555555532 2334599999998 666677777777754
No 259
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.19 E-value=8.3e-05 Score=78.52 Aligned_cols=216 Identities=12% Similarity=0.062 Sum_probs=136.8
Q ss_pred CCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcccccccCCcee
Q 003822 466 SCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTV 545 (793)
Q Consensus 466 ~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~~~~~~~~~~~ 545 (793)
+..+..|+.++.|..+|.. ++....... +...+.++... .++ .++.++.++.|..||.. ++.......
T Consensus 107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~~--~~~~~~~~~~~-~~g-~l~vgt~~~~l~~~d~~-g~~~~~~~~------ 174 (330)
T 3hxj_A 107 EDILYVTSMDGHLYAINTD-GTEKWRFKT--KKAIYATPIVS-EDG-TIYVGSNDNYLYAINPD-GTEKWRFKT------ 174 (330)
T ss_dssp TTEEEEECTTSEEEEECTT-SCEEEEEEC--SSCCCSCCEEC-TTS-CEEEECTTSEEEEECTT-SCEEEEEEC------
T ss_pred CCEEEEEecCCEEEEEcCC-CCEEEEEcC--CCceeeeeEEc-CCC-EEEEEcCCCEEEEECCC-CCEeEEEec------
Confidence 3568888889999999998 776665542 33344455542 344 46677788999999988 543211110
Q ss_pred EecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEECCC
Q 003822 546 TFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQ 625 (793)
Q Consensus 546 ~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~Dg~IrIWDlrt 625 (793)
....+.++...++ +.+++++ +.|..+| .+++....+. .....+.++...++| .+..++.++.+..+|..
T Consensus 175 ---~~~~~~~~~~d~~-g~l~v~t--~~l~~~d-~~g~~~~~~~-~~~~~~~~~~~~~~g--~l~v~t~~~gl~~~~~~- 243 (330)
T 3hxj_A 175 ---NDAITSAASIGKD-GTIYFGS--DKVYAIN-PDGTEKWNFY-AGYWTVTRPAISEDG--TIYVTSLDGHLYAINPD- 243 (330)
T ss_dssp ---SSCCCSCCEECTT-CCEEEES--SSEEEEC-TTSCEEEEEC-CSSCCCSCCEECTTS--CEEEEETTTEEEEECTT-
T ss_pred ---CCCceeeeEEcCC-CEEEEEe--CEEEEEC-CCCcEEEEEc-cCCcceeceEECCCC--eEEEEcCCCeEEEECCC-
Confidence 1123444555344 4455555 8899999 7788877776 355678888888877 35557778888888753
Q ss_pred CCccceEEccCCCCeE-EEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCCCeEEEEEeCC
Q 003822 626 KPIQPCYTASSSKGNV-MVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNGRDYIVSGSCD 704 (793)
Q Consensus 626 ~~~~~~~~l~~~~~~v-sv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~D 704 (793)
+... .......... .+...++|. |.+++.+|.+..+|. +++....+.. ....+..+...++|. |..|+.+
T Consensus 244 g~~~--~~~~~~~~~~~~~~~~~~g~-l~v~t~~ggl~~~d~-~g~~~~~~~~---~~~~~~~~~~d~~g~--l~~gt~~ 314 (330)
T 3hxj_A 244 GTEK--WRFKTGKRIESSPVIGNTDT-IYFGSYDGHLYAINP-DGTEKWNFET---GSWIIATPVIDENGT--IYFGTRN 314 (330)
T ss_dssp SCEE--EEEECSSCCCSCCEECTTSC-EEEECTTCEEEEECT-TSCEEEEEEC---SSCCCSCCEECTTCC--EEEECTT
T ss_pred CCEe--EEeeCCCCccccceEcCCCe-EEEecCCCCEEEECC-CCcEEEEEEc---CCccccceEEcCCCE--EEEEcCC
Confidence 3222 2222222222 245555564 777888889999995 7877666643 233344555556775 7778899
Q ss_pred CcEEEEEEcC
Q 003822 705 EHVVRICCAQ 714 (793)
Q Consensus 705 g~II~IWDv~ 714 (793)
|.+ ++...+
T Consensus 315 G~~-~~~~~~ 323 (330)
T 3hxj_A 315 GKF-YALFNL 323 (330)
T ss_dssp SCE-EEEEC-
T ss_pred CeE-EEEecc
Confidence 998 776554
No 260
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.18 E-value=0.00041 Score=80.83 Aligned_cols=203 Identities=9% Similarity=0.066 Sum_probs=121.4
Q ss_pred CEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCC-------EEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcccccc
Q 003822 467 CLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNS-------VLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMH 539 (793)
Q Consensus 467 ~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~-------V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~~~~~ 539 (793)
..+++++.++.|.-+|..+|+.+........... -..++. .+..++.++.|+.|.-+|..+++.......
T Consensus 69 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~---~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~ 145 (582)
T 1flg_A 69 GVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI---YGDKVFFGTLDASVVALNKNTGKVVWKKKF 145 (582)
T ss_dssp TEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE---ETTEEEEEETTTEEEEEESSSCCEEEEEEC
T ss_pred CEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE---ECCEEEEEeCCCEEEEEECCCCCEEeeecC
Confidence 4566666645599999999999877764321110 012222 246788888999999999999887544321
Q ss_pred cCCceeEec-CCCCeEEEEEcc-CCC-EEEEEEC------CCcEEEEECCCCcEEEEEcccCCCCe--------------
Q 003822 540 YGAGTVTFD-EFDQLTSVHVNS-MDE-LFLASGY------SKNIALYDINSGRRLQVFADMHKEHI-------------- 596 (793)
Q Consensus 540 ~~~~~~~~~-~~~~V~sv~~s~-~~~-~lla~g~------Dg~I~IWDl~tg~~l~~~~~gh~~~V-------------- 596 (793)
..... .+. ...++ +.=.. .+. .+++++. ++.|+-+|..+|+.+.+... ....+
T Consensus 146 ~~~~~-~~~~~~sP~--v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~-~~~~~~p~~~~~~~~~g~~ 221 (582)
T 1flg_A 146 ADHGA-GYTMTGAPT--IVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPF-VEGHMGRLNGKDSTVTGDV 221 (582)
T ss_dssp SCGGG-TCBCCSCCE--EEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEES-STTCEEEETTEEEEESSCT
T ss_pred CCCCc-CcccccCCE--EeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCC-CccccccccCccccccccc
Confidence 11000 000 00111 11000 112 5555442 78999999999998887652 10000
Q ss_pred ---------------------------EEEEEcCCCCcEEEEEeC--------------------C----CeEEEEECCC
Q 003822 597 ---------------------------NVVKFSNHSPSIFATSSF--------------------D----QDVKLWDLRQ 625 (793)
Q Consensus 597 ---------------------------~sv~fspdg~~~LaTgs~--------------------D----g~IrIWDlrt 625 (793)
..+++.|.. .+++.+.. | +.|.-+|.++
T Consensus 222 g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~-g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~T 300 (582)
T 1flg_A 222 KAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAET-NTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSS 300 (582)
T ss_dssp TCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTT-TEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTT
T ss_pred ccccCCCccccccccccccccCCccccCCceEcCCC-CEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCC
Confidence 134566666 45555542 2 5899999999
Q ss_pred CCccceEEccCCC--------CeEEEEEe-cCCC---EEEEEeCCCeEEEEEcCCCcEEEEEee
Q 003822 626 KPIQPCYTASSSK--------GNVMVCFS-PDDH---YLLVSAVDNEVRQLLAVDGRVHLNFGI 677 (793)
Q Consensus 626 ~~~~~~~~l~~~~--------~~vsv~fS-pdg~---~Lasgs~Dg~I~IwDl~tg~~~~~l~~ 677 (793)
++..=.+....+. .++-+... .+|+ .++.++.+|.++++|..+|+.+..+..
T Consensus 301 G~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~ 364 (582)
T 1flg_A 301 GEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPF 364 (582)
T ss_dssp CCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEES
T ss_pred CCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEeccccc
Confidence 8655444443332 12222332 5774 788899999999999999999877654
No 261
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.11 E-value=0.0019 Score=71.01 Aligned_cols=240 Identities=6% Similarity=0.018 Sum_probs=148.9
Q ss_pred EEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcccc
Q 003822 458 QFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRG 537 (793)
Q Consensus 458 ~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~~~ 537 (793)
|.+..+ . .+|+.+. ...|+.+++..+.....+. ....+.+++|.+.++.++++-...+.|..++........
T Consensus 81 C~~~~~-~-~~l~~~~-~~~I~~i~~~~~~~~~~~~---~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~-- 152 (386)
T 3v65_B 81 CKALGP-E-PVLLFAN-RIDIRQVLPHRSEYTLLLN---NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEE-- 152 (386)
T ss_dssp EEECSS-C-CEEEEEC-BSCEEEECTTSCCCEEEEC---SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEE--
T ss_pred ECCccc-c-ceeEeec-CccceeeccCCCcEEEEec---CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEE--
Confidence 344444 3 3444443 4578888988766544443 234688999974455555555567889999987653211
Q ss_pred cccCCceeEecCCCCeEEEEEccCCCEEEEEE-CCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeCC-
Q 003822 538 MHYGAGTVTFDEFDQLTSVHVNSMDELFLASG-YSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFD- 615 (793)
Q Consensus 538 ~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g-~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~D- 615 (793)
+..........+++.+.++.++.+. ..+.|.+.++........+. ........++++|.++.++++-...
T Consensus 153 -------~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~-~~l~~P~giavdp~~g~ly~td~~~~ 224 (386)
T 3v65_B 153 -------VVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLW-QSLEKPRAIALHPMEGTIYWTDWGNT 224 (386)
T ss_dssp -------EECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEEC-SSCSCEEEEEEETTTTEEEEEECSSS
T ss_pred -------EEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeec-CCCCCCcEEEEEcCCCeEEEeccCCC
Confidence 1111123456788877777776665 46789888887544333333 2445679999999775666666555
Q ss_pred CeEEEEECCCCCccceEEccCCCCeEEEEEecCCCEEEEEe-CCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCC
Q 003822 616 QDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLVSA-VDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNG 694 (793)
Q Consensus 616 g~IrIWDlrt~~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs-~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg 694 (793)
+.|..+++...... .....+-..+..++++|++..|+.+. ..+.|..+|+..... ..+. ..+......+++ ..+
T Consensus 225 ~~I~r~~~dG~~~~-~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~-~~~~--~~~~~~P~giav-~~~ 299 (386)
T 3v65_B 225 PRIEASSMDGSGRR-IIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHR-KAVI--SQGLPHPFAITV-FED 299 (386)
T ss_dssp CEEEEEETTSCSCE-EEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSC-EEEE--CSSCSSEEEEEE-ETT
T ss_pred CEEEEEeCCCCCcE-EEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCee-EEEE--ECCCCCceEEEE-ECC
Confidence 78999998764322 22222333456799998877777665 467899999764332 2222 122345566777 334
Q ss_pred CeEEEEEeCCCcEEEEEEcCCCcEEE
Q 003822 695 RDYIVSGSCDEHVVRICCAQTGRRLR 720 (793)
Q Consensus 695 ~~~L~Sgs~Dg~II~IWDv~tg~~l~ 720 (793)
. ++++-...+.| ..++..+|+.+.
T Consensus 300 ~-ly~td~~~~~V-~~~~~~~G~~~~ 323 (386)
T 3v65_B 300 S-LYWTDWHTKSI-NSANKFTGKNQE 323 (386)
T ss_dssp E-EEEEETTTTEE-EEEETTTCCSCE
T ss_pred E-EEEeeCCCCeE-EEEECCCCcceE
Confidence 3 66666666777 888877887776
No 262
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.10 E-value=0.004 Score=67.41 Aligned_cols=241 Identities=6% Similarity=0.020 Sum_probs=148.9
Q ss_pred EEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCccc
Q 003822 457 RQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIR 536 (793)
Q Consensus 457 ~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~~ 536 (793)
+|.+..+ ++ .|+.+. ...|+..++........+. ....+.+++|.+.++.++++-...+.|..+++.......
T Consensus 37 ~C~~~~~-~~-~ll~~~-~~~I~~i~~~g~~~~~~~~---~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~- 109 (349)
T 3v64_C 37 SCKALGP-EP-VLLFAN-RIDIRQVLPHRSEYTLLLN---NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEE- 109 (349)
T ss_dssp CEEESSS-CC-EEEEEC-BSCEEEECTTSCCEEEEEC---SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE-
T ss_pred ccccccc-Cc-eeEeec-ccceEEEeCCCCeeEEeec---CCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceE-
Confidence 3444455 33 444443 4568888887665544443 234588999974445455555567889999987654211
Q ss_pred ccccCCceeEecCCCCeEEEEEccCCCEEEEEE-CCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeCC
Q 003822 537 GMHYGAGTVTFDEFDQLTSVHVNSMDELFLASG-YSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFD 615 (793)
Q Consensus 537 ~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g-~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~D 615 (793)
+.........++++.+.++.++.+. ..+.|.+.++........+. ......+.++++|.++.++++-...
T Consensus 110 --------~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~-~~l~~P~~iavdp~~g~ly~td~~~ 180 (349)
T 3v64_C 110 --------VVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLW-QSLEKPRAIALHPMEGTIYWTDWGN 180 (349)
T ss_dssp --------EECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC-TTCSCEEEEEEETTTTEEEEEECSS
T ss_pred --------EEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEe-CCCCCcceEEEecCcCeEEEeccCC
Confidence 1111123457888877777776665 46889999988544333333 2445678999999765677776666
Q ss_pred -CeEEEEECCCCCccceEEccCCCCeEEEEEecCCCEEEEEe-CCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeC
Q 003822 616 -QDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLVSA-VDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLN 693 (793)
Q Consensus 616 -g~IrIWDlrt~~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs-~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspd 693 (793)
+.|..+++.......+ ...+-..+..++++|++..|+.+. ..+.|..+|+..... ..+. .........+++ ..
T Consensus 181 ~~~I~r~~~dG~~~~~~-~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~-~~~~--~~~~~~P~giav-~~ 255 (349)
T 3v64_C 181 TPRIEASSMDGSGRRII-ADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHR-KAVI--SQGLPHPFAITV-FE 255 (349)
T ss_dssp SCEEEEEETTSCSCEES-CCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEE--CSSCSSEEEEEE-ET
T ss_pred CCEEEEEeCCCCCcEEE-EECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCce-EEEE--eCCCCCceEEEE-EC
Confidence 8899999876432211 112233456799999877777665 467899999764332 2221 122334566776 34
Q ss_pred CCeEEEEEeCCCcEEEEEEcCCCcEEE
Q 003822 694 GRDYIVSGSCDEHVVRICCAQTGRRLR 720 (793)
Q Consensus 694 g~~~L~Sgs~Dg~II~IWDv~tg~~l~ 720 (793)
+. ++++-...+.| ..++..+|+.+.
T Consensus 256 ~~-ly~td~~~~~V-~~~~~~~G~~~~ 280 (349)
T 3v64_C 256 DS-LYWTDWHTKSI-NSANKFTGKNQE 280 (349)
T ss_dssp TE-EEEEETTTTEE-EEEETTTCCSCE
T ss_pred CE-EEEecCCCCeE-EEEEccCCCccE
Confidence 43 55665566677 888877887766
No 263
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.09 E-value=0.0085 Score=72.04 Aligned_cols=250 Identities=8% Similarity=0.085 Sum_probs=150.2
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcc
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSI 535 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~ 535 (793)
|.++...+ ++.+. .|+.++-|..|+..+++....... .+...|.++... .++ .+..|+.++-+..||..+++...
T Consensus 175 i~~i~~d~-~g~lw-igt~~~Gl~~~~~~~~~~~~~~~~-~~~~~i~~i~~d-~~g-~lwigt~~~Gl~~~~~~~~~~~~ 249 (795)
T 4a2l_A 175 IASTLYRQ-GDQIY-IGTSTDGLYTYSITQKTFEKVIPI-LGTKQIQAILQQ-SPT-RIWVATEGAGLFLINPKTKEIKN 249 (795)
T ss_dssp CEEEEEEE-TTEEE-EEESSSCEEEEETTTCCEEECC-----CCCEEEEEEE-ETT-EEEEEEBSSCEEEEETTTTEEEE
T ss_pred eEEEEECC-CCCEE-EEECCCCEEEEeCCCCeEEEecCC-CCCCeeEEEEEc-CCC-CEEEEECCCCeEEEeCCCCeEEE
Confidence 67788877 66544 466655599999887765432211 234578888764 344 45556655458889987643211
Q ss_pred cccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcc------cCCCCeEEEEEcCCCCcEE
Q 003822 536 RGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFAD------MHKEHINVVKFSNHSPSIF 609 (793)
Q Consensus 536 ~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~------gh~~~V~sv~fspdg~~~L 609 (793)
....... ........|.++...+++. +.+++.+ -|.+||..+++....... .....|.++...++| . +
T Consensus 250 ~~~~~~~--~~~l~~~~i~~i~~d~~g~-lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g-~-l 323 (795)
T 4a2l_A 250 YLHSPSN--PKSISSNYIRSLAMDSQNR-LWIGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQG-G-M 323 (795)
T ss_dssp ECCCTTC--TTSCSCSBEEEEEECTTSC-EEEEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTS-C-E
T ss_pred eecCCCC--ccccCCCeEEEEEEcCCCC-EEEEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCc-C-E
Confidence 1000000 0001124588888865544 5555555 689999887764433211 123579999999888 3 5
Q ss_pred EEEeCCCeEEEEECCCCCccceEEcc-----CCCCeEEEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeec-----
Q 003822 610 ATSSFDQDVKLWDLRQKPIQPCYTAS-----SSKGNVMVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITA----- 679 (793)
Q Consensus 610 aTgs~Dg~IrIWDlrt~~~~~~~~l~-----~~~~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~----- 679 (793)
..|+.++-|..|+..+.......... ....+.++...++|. |.+|+.++-|..||..+++... +....
T Consensus 324 Wigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~~-~~~~~~~~~~ 401 (795)
T 4a2l_A 324 WLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRFTS-YTLQEDESAR 401 (795)
T ss_dssp EEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCEEE-ECCC------
T ss_pred EEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcEEE-EecCCCCccc
Confidence 56777777999987654322111111 122344677788877 5667777779999988776532 22111
Q ss_pred -CCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEE
Q 003822 680 -TGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRLR 720 (793)
Q Consensus 680 -~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~ 720 (793)
.....+.++...++|. .|..|+.++.+ ..||..+++...
T Consensus 402 ~l~~~~v~~i~~d~~g~-~lWigt~~~Gl-~~~d~~~~~~~~ 441 (795)
T 4a2l_A 402 GIGSNNIKAVYVDEKKS-LVYIGTHAGGL-SILHRNSGQVEN 441 (795)
T ss_dssp CCSCSCEEEEEEETTTT-EEEEEETTTEE-EEEETTTCCEEE
T ss_pred CCCCccEEEEEEcCCCC-EEEEEeCcCce-eEEeCCCCcEEE
Confidence 1234566777677775 47778887778 999999887544
No 264
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.07 E-value=0.0028 Score=67.57 Aligned_cols=207 Identities=9% Similarity=0.041 Sum_probs=129.4
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCC----CeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCC
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHEN----ENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHM 531 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t----~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~ 531 (793)
+..++|++.++.++++-...+.|..+++.. ......+. ..-.....+++.+.++++.++-...+.|.+.+....
T Consensus 32 p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~--~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~ 109 (316)
T 1ijq_A 32 VVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS--RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 109 (316)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEEC--SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS
T ss_pred eEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEe--CCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCC
Confidence 789999995556666666778999999875 22222222 222345677775334555555567789999998753
Q ss_pred CCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEEC-C-CcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEE
Q 003822 532 PPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY-S-KNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIF 609 (793)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~-D-g~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~L 609 (793)
... .+..........+++.|.++.++.+.. . +.|...++. |.....+....-...+.++++|+++.++
T Consensus 110 ~~~---------~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d-G~~~~~~~~~~~~~P~gla~d~~~~~lY 179 (316)
T 1ijq_A 110 KRK---------TLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSLVTENIQWPNGITLDLLSGRLY 179 (316)
T ss_dssp SEE---------EEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCCEEEEECSSCSCEEEEEEETTTTEEE
T ss_pred ceE---------EEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCC-CCCeEEEEECCCCCceEEEEeccCCEEE
Confidence 221 011112345789999888888777764 3 788888886 4433333212345678999998875666
Q ss_pred EEEeCCCeEEEEECCCCCccceEEcc-CCCCeEEEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEE
Q 003822 610 ATSSFDQDVKLWDLRQKPIQPCYTAS-SSKGNVMVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNF 675 (793)
Q Consensus 610 aTgs~Dg~IrIWDlrt~~~~~~~~l~-~~~~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l 675 (793)
++-+..+.|..+|+.......+.... .-..+..+++. .+...++-...+.|..++..+|+.+..+
T Consensus 180 ~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~~~~i 245 (316)
T 1ijq_A 180 WVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLL 245 (316)
T ss_dssp EEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred EEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcceEEE
Confidence 66667789999999864433333321 12345567775 3444455556788999998777765555
No 265
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.07 E-value=0.00085 Score=73.85 Aligned_cols=207 Identities=8% Similarity=0.082 Sum_probs=132.4
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcc
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSI 535 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~ 535 (793)
+..++|++.++.++++-...+.|..++.+.+.....+. ........+++.+..+.++++-...+.|.+.+++......
T Consensus 118 ~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~--~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~ 195 (386)
T 3v65_B 118 AIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS--TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV 195 (386)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEEC--SSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEE
T ss_pred cEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEe--CCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEE
Confidence 78899998566666666678899999998765444333 2223345667653345555565566788888876533211
Q ss_pred cccccCCceeEecCCCCeEEEEEccCCCEEEEEEC-C-CcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEe
Q 003822 536 RGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY-S-KNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSS 613 (793)
Q Consensus 536 ~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~-D-g~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs 613 (793)
+..........+++.|.++.++.+.. . +.|..+++.......... ..-...+.++|+|+++.++++-+
T Consensus 196 ---------l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~-~~~~~PnGlavd~~~~~lY~aD~ 265 (386)
T 3v65_B 196 ---------LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIAD-THLFWPNGLTIDYAGRRMYWVDA 265 (386)
T ss_dssp ---------EECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC-SSCSCEEEEEEEGGGTEEEEEET
T ss_pred ---------eecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEE-CCCCCeeeEEEeCCCCEEEEEEC
Confidence 11122245789999988888777764 4 788888887443333333 23456789999987756777777
Q ss_pred CCCeEEEEECCCCCccceEEccCCCCeEEEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEe
Q 003822 614 FDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFG 676 (793)
Q Consensus 614 ~Dg~IrIWDlrt~~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~ 676 (793)
..+.|..+|+...... .....+...+..+++. .+...++....+.|..++..+|+....+.
T Consensus 266 ~~~~I~~~d~dG~~~~-~~~~~~~~~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 326 (386)
T 3v65_B 266 KHHVIERANLDGSHRK-AVISQGLPHPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQEIIR 326 (386)
T ss_dssp TTTEEEEECTTSCSCE-EEECSSCSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred CCCEEEEEeCCCCeeE-EEEECCCCCceEEEEE-CCEEEEeeCCCCeEEEEECCCCcceEEEc
Confidence 7788999998764322 2222233355567773 44444555567888888877777665554
No 266
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.04 E-value=0.0016 Score=70.67 Aligned_cols=207 Identities=8% Similarity=0.098 Sum_probs=131.6
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcc
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSI 535 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~ 535 (793)
+..++|++.++.++.+-...+.|..++++.+.....+. ........+++.+..++++++-...+.|.+.+++......
T Consensus 75 ~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~--~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~ 152 (349)
T 3v64_C 75 AIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS--TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV 152 (349)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred eEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEe--CCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEE
Confidence 78999998566666666678899999998765443332 2223456777653355555666667889999987643211
Q ss_pred cccccCCceeEecCCCCeEEEEEccCCCEEEEEEC-C-CcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEe
Q 003822 536 RGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY-S-KNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSS 613 (793)
Q Consensus 536 ~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~-D-g~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs 613 (793)
+..........+++.|.++.++.+.. . +.|..+++... ....+....-...+.++++|+++.++++-+
T Consensus 153 ---------l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~-~~~~~~~~~~~~PnGla~d~~~~~lY~aD~ 222 (349)
T 3v64_C 153 ---------LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS-GRRIIADTHLFWPNGLTIDYAGRRMYWVDA 222 (349)
T ss_dssp ---------EECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-SCEESCCSSCSCEEEEEEETTTTEEEEEET
T ss_pred ---------EEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCC-CcEEEEECCCCCcceEEEeCCCCEEEEEEC
Confidence 11122245789999988888777764 4 78988888743 333332123456789999987756777766
Q ss_pred CCCeEEEEECCCCCccceEEccCCCCeEEEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEe
Q 003822 614 FDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFG 676 (793)
Q Consensus 614 ~Dg~IrIWDlrt~~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~ 676 (793)
..+.|..+|+.......+ .......+..+++. .+...++-...+.|..++..+|+....+.
T Consensus 223 ~~~~I~~~~~dG~~~~~~-~~~~~~~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 283 (349)
T 3v64_C 223 KHHVIERANLDGSHRKAV-ISQGLPHPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQEIIR 283 (349)
T ss_dssp TTTEEEEEETTSCSCEEE-ECSSCSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred CCCEEEEEeCCCCceEEE-EeCCCCCceEEEEE-CCEEEEecCCCCeEEEEEccCCCccEEec
Confidence 778899999876432222 22223345566663 44444444557788888877776655543
No 267
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.03 E-value=0.0092 Score=65.90 Aligned_cols=238 Identities=9% Similarity=0.022 Sum_probs=147.0
Q ss_pred EEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcccccccCCceeEe
Q 003822 468 LMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTF 547 (793)
Q Consensus 468 ~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~~~~~~~~~~~~~ 547 (793)
+|+.+. ...|+..++........+. ....+.+++|.+.++.++++-...+.|..+++....... ....+..
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~~~~~~~---~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~-----~~~~~~~ 155 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSEYTSLIP---NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVS-----SYDTVIS 155 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCSCEEEEC---SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------C-----CCEEEEC
T ss_pred eeEEec-cceeEEEccCCcceeEecc---ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCC-----cceEEEe
Confidence 444444 4689999988766554443 346788999984444455555567889989887532100 0001111
Q ss_pred cCCCCeEEEEEccCCCEEEEEE-CCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeC-CCeEEEEECCC
Q 003822 548 DEFDQLTSVHVNSMDELFLASG-YSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSF-DQDVKLWDLRQ 625 (793)
Q Consensus 548 ~~~~~V~sv~~s~~~~~lla~g-~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~-Dg~IrIWDlrt 625 (793)
........+++.+.++.++.+. ..+.|.+.++........+. ........|+++|.++.++++-.. .+.|...++..
T Consensus 156 ~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~-~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG 234 (400)
T 3p5b_L 156 RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR-ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG 234 (400)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEE-CSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTS
T ss_pred CCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEe-CCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCC
Confidence 1234578899987677777665 46899999988655444444 244567899999976456665533 47899999876
Q ss_pred CCccceEEccCCCCeEEEEEecCCCEEEEEe-CCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCCCeEEEEEeCC
Q 003822 626 KPIQPCYTASSSKGNVMVCFSPDDHYLLVSA-VDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNGRDYIVSGSCD 704 (793)
Q Consensus 626 ~~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs-~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~D 704 (793)
.... ......-..+..++++|++..|+.+. ..+.|..+|+..... ..+......-.....++. ++..++++-...
T Consensus 235 ~~~~-~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~-~~~~~~~~~l~~P~gl~v--~~~~lywtd~~~ 310 (400)
T 3p5b_L 235 VDIY-SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAV--FEDKVFWTDIIN 310 (400)
T ss_dssp CSCE-EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCC-EEEEECSSTTSSEEEEEE--ETTEEEEEESSS
T ss_pred CccE-EEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCcc-EEEEeCCCCCCCCEEEEE--eCCEEEEecCCC
Confidence 4322 22222334566799999888887775 467899999864433 333221112234555665 334366666677
Q ss_pred CcEEEEEEcCCCcEEE
Q 003822 705 EHVVRICCAQTGRRLR 720 (793)
Q Consensus 705 g~II~IWDv~tg~~l~ 720 (793)
+.| ..+|..+|+.+.
T Consensus 311 ~~V-~~~~~~~G~~~~ 325 (400)
T 3p5b_L 311 EAI-FSANRLTGSDVN 325 (400)
T ss_dssp CSE-EEEESSSCCCCE
T ss_pred CeE-EEEEcCCCCceE
Confidence 788 889988888777
No 268
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.00 E-value=0.0022 Score=71.82 Aligned_cols=241 Identities=10% Similarity=0.071 Sum_probs=138.5
Q ss_pred ceEEEEEeCC-CCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCC----c-EEEEEc
Q 003822 455 RPRQFEYHPS-ISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNG----S-LKLYDI 528 (793)
Q Consensus 455 ~V~~vafsP~-d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~Dg----t-V~vWDl 528 (793)
.+..++|+|. +...|..+...+.|+.++..++...... ........++|. ++++ |+.+...+ . +...+.
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~---~~~~~P~giavd-~dG~-lyVad~~~~~~~~gv~~~~~ 214 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKT---TNIGQCADVNFT-LNGD-MVVVDDQSSDTNTGIYLFTR 214 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEEC---CCCSCEEEEEEC-TTCC-EEEEECCSCTTSEEEEEECG
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEee---cCCCCccEEEEC-CCCC-EEEEcCCCCcccceEEEEEC
Confidence 3788999993 2334544444489999999888766543 234568899997 7788 44444321 1 222222
Q ss_pred CCCCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEE-CCCcEEEEECCCCcEEEEE-cccCCCCeEEEEEcCCCC
Q 003822 529 RHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASG-YSKNIALYDINSGRRLQVF-ADMHKEHINVVKFSNHSP 606 (793)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g-~Dg~I~IWDl~tg~~l~~~-~~gh~~~V~sv~fspdg~ 606 (793)
...... ............+++++.++.++++. .++.|+.+|..++.....+ ..+.......++|+|++.
T Consensus 215 ~~~~~~---------~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~ 285 (433)
T 4hw6_A 215 ASGFTE---------RLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGD 285 (433)
T ss_dssp GGTTCC---------EEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSS
T ss_pred CCCeec---------cccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCC
Confidence 211100 01111234567788888566666555 5788999999877763332 212223345799999994
Q ss_pred cEEEEEeCCCeEEEEECCC--CCcc--ceEEcc-C-------------CCCeEEEEE---------ecCCCEEEEEeCCC
Q 003822 607 SIFATSSFDQDVKLWDLRQ--KPIQ--PCYTAS-S-------------SKGNVMVCF---------SPDDHYLLVSAVDN 659 (793)
Q Consensus 607 ~~LaTgs~Dg~IrIWDlrt--~~~~--~~~~l~-~-------------~~~~vsv~f---------Spdg~~Lasgs~Dg 659 (793)
.++++-...+.|+.+|... +... ..+.-. + -..+..+++ .++|...++-...+
T Consensus 286 ~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~ 365 (433)
T 4hw6_A 286 WAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSH 365 (433)
T ss_dssp EEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTT
T ss_pred EEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCC
Confidence 3666666678899988753 2211 111111 1 012445888 67777666666678
Q ss_pred eEEEEEcCCCcEEEEEeeecC--------C-------CCCcEEEEEe-eCCCeEEEEEeCCCcEEEEEEc
Q 003822 660 EVRQLLAVDGRVHLNFGITAT--------G-------SSQNYTRSYY-LNGRDYIVSGSCDEHVVRICCA 713 (793)
Q Consensus 660 ~I~IwDl~tg~~~~~l~~~~~--------~-------~~~v~s~afs-pdg~~~L~Sgs~Dg~II~IWDv 713 (793)
.|+.++. +|.. .++..... + -.....+++. ++|. ++++=....+| +.+++
T Consensus 366 ~I~~~~~-~G~v-~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~-lyVaD~~n~rI-r~i~~ 431 (433)
T 4hw6_A 366 TVRVLTP-EGRV-TTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKC-FYIGDCDNHRV-RKIAP 431 (433)
T ss_dssp EEEEECT-TSEE-EEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTE-EEEEEGGGTEE-EEEEE
T ss_pred EEEEECC-CCCE-EEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCE-EEEEeCCCCEE-EEEec
Confidence 9999984 6644 34432211 0 1235677888 4443 55554455566 66654
No 269
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=97.97 E-value=0.00074 Score=71.77 Aligned_cols=209 Identities=10% Similarity=0.010 Sum_probs=123.8
Q ss_pred CEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcccccccCC-------c---eeEecCCCCeEEEEEccCCCEEEEEE
Q 003822 500 SVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGA-------G---TVTFDEFDQLTSVHVNSMDELFLASG 569 (793)
Q Consensus 500 ~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~~~~~~~~-------~---~~~~~~~~~V~sv~~s~~~~~lla~g 569 (793)
...+++|. +++++++++..++.|..||..++........... . .........+.++++.+.++.++++.
T Consensus 20 ~p~~i~~d-~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d 98 (322)
T 2fp8_A 20 APNSFTFD-STNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVD 98 (322)
T ss_dssp CCCCEECC-TTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEE
T ss_pred CceEEEEc-CCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEE
Confidence 35567775 5777788888889999998776432110000000 0 00000013478899976567777776
Q ss_pred CCCcEEEEECCCCcEEEEEcc---c-CCCCeEEEEEcC-CCCcEEEEEeC-----------------CCeEEEEECCCCC
Q 003822 570 YSKNIALYDINSGRRLQVFAD---M-HKEHINVVKFSN-HSPSIFATSSF-----------------DQDVKLWDLRQKP 627 (793)
Q Consensus 570 ~Dg~I~IWDl~tg~~l~~~~~---g-h~~~V~sv~fsp-dg~~~LaTgs~-----------------Dg~IrIWDlrt~~ 627 (793)
..+.|..+|..++.. ..+.. + .....+.+++.+ +| +++++-.. ++.|..||..++.
T Consensus 99 ~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G-~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~ 176 (322)
T 2fp8_A 99 CYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTG-IVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKE 176 (322)
T ss_dssp TTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTC-CEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTE
T ss_pred CCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCC-EEEEECCcccccccccceehcccCCCceEEEEeCCCCE
Confidence 555688888775532 22221 1 123578899999 88 66665432 3678889987653
Q ss_pred ccceEEccCCCCeEEEEEecCCCEEEEE-eCCCeEEEEEcCCCc--EEEEEeeecCCCCCcEEEEEeeCCCeEEEEEeC-
Q 003822 628 IQPCYTASSSKGNVMVCFSPDDHYLLVS-AVDNEVRQLLAVDGR--VHLNFGITATGSSQNYTRSYYLNGRDYIVSGSC- 703 (793)
Q Consensus 628 ~~~~~~l~~~~~~vsv~fSpdg~~Lasg-s~Dg~I~IwDl~tg~--~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~- 703 (793)
...... .-..+..++|+|+|++|+++ +..+.|.+|++.... ....+.. .. . ...+++.++|. +.++...
T Consensus 177 ~~~~~~--~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~-~~--g-P~gi~~d~~G~-l~va~~~~ 249 (322)
T 2fp8_A 177 TTLLLK--ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK-IP--N-PGNIKRNADGH-FWVSSSEE 249 (322)
T ss_dssp EEEEEE--EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE-CS--S-EEEEEECTTSC-EEEEEEEE
T ss_pred EEEecc--CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe-CC--C-CCCeEECCCCC-EEEEecCc
Confidence 322211 11233358999999977766 456899999987531 1122221 11 2 66788899998 4444333
Q ss_pred ---------CCcEEEEEEcCCCcEEE
Q 003822 704 ---------DEHVVRICCAQTGRRLR 720 (793)
Q Consensus 704 ---------Dg~II~IWDv~tg~~l~ 720 (793)
.+.| ..+|. .|+.+.
T Consensus 250 ~~~~~~~~~~~~v-~~~d~-~G~~~~ 273 (322)
T 2fp8_A 250 LDGNMHGRVDPKG-IKFDE-FGNILE 273 (322)
T ss_dssp TTSSTTSCEEEEE-EEECT-TSCEEE
T ss_pred ccccccCCCccEE-EEECC-CCCEEE
Confidence 3556 77776 477776
No 270
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.95 E-value=0.0058 Score=67.52 Aligned_cols=208 Identities=8% Similarity=0.020 Sum_probs=131.6
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCC----eEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCC
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENE----NIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHM 531 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~----~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~ 531 (793)
+..++|++.++.++.+-...+.|+.+++... .....+. ........+++.+..+++.++-...+.|.+.+++..
T Consensus 114 ~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~--~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~ 191 (400)
T 3p5b_L 114 VVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS--RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 191 (400)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEEC--SSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTC
T ss_pred ceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEe--CCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCC
Confidence 7899999955656666667788999998752 2222222 233467788875335555566566788888888754
Q ss_pred CCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEEC--CCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEE
Q 003822 532 PPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY--SKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIF 609 (793)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~--Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~L 609 (793)
.... +..........|++.|.++.++.+.. .+.|...++........+. ..-...+.|++++++..++
T Consensus 192 ~~~~---------l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~-~~l~~P~glavd~~~~~lY 261 (400)
T 3p5b_L 192 KRKT---------LFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT-ENIQWPNGITLDLLSGRLY 261 (400)
T ss_dssp SEEE---------EEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEEC-SSCSCEEEEEEETTTTEEE
T ss_pred ceEE---------EEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEE-CCCCceEEEEEEeCCCEEE
Confidence 3211 11122345789999998888877763 4789999987443333333 2345789999998875666
Q ss_pred EEEeCCCeEEEEECCCCCccceEEccC-CCCeEEEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEe
Q 003822 610 ATSSFDQDVKLWDLRQKPIQPCYTASS-SKGNVMVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFG 676 (793)
Q Consensus 610 aTgs~Dg~IrIWDlrt~~~~~~~~l~~-~~~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~ 676 (793)
++-+..+.|..+|+.......+..... -..+..+++. .+..+++-...+.|..+|..+|+.+..+.
T Consensus 262 ~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~~~i~ 328 (400)
T 3p5b_L 262 WVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLA 328 (400)
T ss_dssp EEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCCCEEEE
T ss_pred EEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCceEEEe
Confidence 666667889999997654443333211 2345556663 33444455566788889988887665553
No 271
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.94 E-value=0.0025 Score=71.20 Aligned_cols=241 Identities=10% Similarity=0.139 Sum_probs=138.1
Q ss_pred eEEEEEeC-CCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEc-CC----cEEEEEcC
Q 003822 456 PRQFEYHP-SISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSD-NG----SLKLYDIR 529 (793)
Q Consensus 456 V~~vafsP-~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~-Dg----tV~vWDl~ 529 (793)
+..++++| .++. |..+...+.|+.+|..++....... .......++|. ++++.|+++.. ++ .+.+.+.
T Consensus 139 P~~lavdp~~~g~-Lyv~d~~~~I~~id~~~~~v~~~~~---~~~~P~~ia~d-~~G~~lyvad~~~~~~~~~v~~~~~- 212 (430)
T 3tc9_A 139 AVWLSFDPKNHNH-LYLVGEQHPTRLIDFEKEYVSTVYS---GLSKVRTICWT-HEADSMIITNDQNNNDRPNNYILTR- 212 (430)
T ss_dssp CCEEEEETTEEEE-EEEEEBTEEEEEEETTTTEEEEEEC---CCSCEEEEEEC-TTSSEEEEEECCSCTTSEEEEEEEG-
T ss_pred CCEEEECCCCCCe-EEEEeCCCcEEEEECCCCEEEEEec---CCCCcceEEEe-CCCCEEEEEeCCCCcccceEEEEeC-
Confidence 78899998 2454 4444444889999998776554443 34568899997 78886666654 22 2333333
Q ss_pred CCCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEE-CCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcE
Q 003822 530 HMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASG-YSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSI 608 (793)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g-~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~ 608 (793)
.+..... ..........+++++|.++.++++. .++.|..+|...+........+.....+.++|+|++..+
T Consensus 213 ~g~~~~~--------~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~l 284 (430)
T 3tc9_A 213 ESGFKVI--------TELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYA 284 (430)
T ss_dssp GGTSCSE--------EEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEE
T ss_pred CCceeee--------eeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEE
Confidence 2221100 0111224457788888666666665 578999999987664333321223457899999999336
Q ss_pred EEEEeCCCeEEEEECCCC--Cc--cceEEcc-C-------------CCCeE-EEEEe--------cCCCEEEEEeCCCeE
Q 003822 609 FATSSFDQDVKLWDLRQK--PI--QPCYTAS-S-------------SKGNV-MVCFS--------PDDHYLLVSAVDNEV 661 (793)
Q Consensus 609 LaTgs~Dg~IrIWDlrt~--~~--~~~~~l~-~-------------~~~~v-sv~fS--------pdg~~Lasgs~Dg~I 661 (793)
+++-...+.|..++.... .. ...+.-. + ...+. .++.. ++|...++-...+.|
T Consensus 285 yv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I 364 (430)
T 3tc9_A 285 YIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCI 364 (430)
T ss_dssp EEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEE
T ss_pred EEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEE
Confidence 666667888999886532 11 0111110 1 01222 24443 345555555567789
Q ss_pred EEEEcCCCcEEEEEeeec----CC-----------CCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEc
Q 003822 662 RQLLAVDGRVHLNFGITA----TG-----------SSQNYTRSYYLNGRDYIVSGSCDEHVVRICCA 713 (793)
Q Consensus 662 ~IwDl~tg~~~~~l~~~~----~~-----------~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv 713 (793)
+.++ .+|... ++.... .+ -.....+++.+++..++++-....+| +.++.
T Consensus 365 ~~i~-~~G~v~-~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rI-r~i~~ 428 (430)
T 3tc9_A 365 RILT-PQGRVT-TFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRI-RKIGY 428 (430)
T ss_dssp EEEC-TTSEEE-EEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEE-EEEEE
T ss_pred EEEC-CCCcEE-EEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeE-EEEcc
Confidence 8888 466543 333220 01 12467888888544255555555566 76654
No 272
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=97.92 E-value=0.018 Score=69.20 Aligned_cols=247 Identities=10% Similarity=0.037 Sum_probs=150.6
Q ss_pred ceEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEecc-----CCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcC
Q 003822 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSF-----GAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIR 529 (793)
Q Consensus 455 ~V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~-----~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~ 529 (793)
.|+++...+ ++.+. .|+.+| |.+||..+++........ -....|.++..- .+| .+..|+.++-|..|+..
T Consensus 264 ~i~~i~~d~-~g~lW-igt~~G-l~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D-~~g-~lWigt~~~Gl~~~~~~ 338 (795)
T 4a2l_A 264 YIRSLAMDS-QNRLW-IGTFND-LNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMD-SQG-GMWLGTYFGGLNYYHPI 338 (795)
T ss_dssp BEEEEEECT-TSCEE-EEESSC-EEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEEC-TTS-CEEEEESSSCEEEECGG
T ss_pred eEEEEEEcC-CCCEE-EEeCCh-hheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEe-CCc-CEEEEECCCCeEEeCCC
Confidence 389999988 66644 455554 899998877654432110 123579988864 444 46677777788999876
Q ss_pred CCCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcc-------cCCCCeEEEEEc
Q 003822 530 HMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFAD-------MHKEHINVVKFS 602 (793)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~-------gh~~~V~sv~fs 602 (793)
+............. ......|.++...+ ++.+.+|+.++-|..||..+++....... .....|.++...
T Consensus 339 ~~~~~~~~~~~~~~---~l~~~~V~~i~~d~-~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d 414 (795)
T 4a2l_A 339 RNRFKNIRNIPYKN---SLSDNVVSCIVEDK-DKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVD 414 (795)
T ss_dssp GGSSEEECCCTTSS---SCSCSSEEEEEECT-TSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEE
T ss_pred cccceEEcCCCCCC---CCCCCeeEEEEECC-CCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEc
Confidence 54321110000000 01124588888754 45566777787899999887764433211 124678999988
Q ss_pred CCCCcEEEEEeCCCeEEEEECCCCCccceEEc---cCCCCeEEEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeee-
Q 003822 603 NHSPSIFATSSFDQDVKLWDLRQKPIQPCYTA---SSSKGNVMVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGIT- 678 (793)
Q Consensus 603 pdg~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l---~~~~~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~- 678 (793)
+++ .+|..|+.++-|..||.++++....... .....+.++...++|+.. +|+.+ -+.+||..+++... +...
T Consensus 415 ~~g-~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lw-igt~~-Gl~~~~~~~~~~~~-~~~~~ 490 (795)
T 4a2l_A 415 EKK-SLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLW-LGTLS-ALVRFNPEQRSFTT-IEKEK 490 (795)
T ss_dssp TTT-TEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEE-EEESS-CEEEEETTTTEEEE-CCBCT
T ss_pred CCC-CEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEE-EEecC-ceeEEeCCCCeEEE-ccccc
Confidence 887 6466678777899999887643221110 012244567888888744 44444 58889988876532 2211
Q ss_pred ---cCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcE
Q 003822 679 ---ATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRR 718 (793)
Q Consensus 679 ---~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~ 718 (793)
......+..+...++|. |..|+. +.+ ..||..+++.
T Consensus 491 ~~~~~~~~~i~~i~~d~~g~--lWigt~-~Gl-~~~~~~~~~~ 529 (795)
T 4a2l_A 491 DGTPVVSKQITTLFRDSHKR--LWIGGE-EGL-SVFKQEGLDI 529 (795)
T ss_dssp TCCBCCCCCEEEEEECTTCC--EEEEES-SCE-EEEEEETTEE
T ss_pred cccccCCceEEEEEECCCCC--EEEEeC-Cce-EEEeCCCCeE
Confidence 11224567777777786 444445 456 8899887765
No 273
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=97.88 E-value=0.00028 Score=83.32 Aligned_cols=236 Identities=9% Similarity=-0.029 Sum_probs=130.4
Q ss_pred EEEEEeCCCCCEEEEEeC-CCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEE-cC-----CcEEEEEcC
Q 003822 457 RQFEYHPSISCLMVFGTL-DGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGS-DN-----GSLKLYDIR 529 (793)
Q Consensus 457 ~~vafsP~d~~~Lasgs~-DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs-~D-----gtV~vWDl~ 529 (793)
.++++.+ ++.++++|+. ++.+.+||..+++....-........ .+++.. +++++++.|+ .+ ..+.+||..
T Consensus 246 ~~~~~~~-~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~-~s~~~~-~dg~iyv~GG~~~~~~~~~~~e~yd~~ 322 (656)
T 1k3i_A 246 PGISMDG-NGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGY-QSSATM-SDGRVFTIGGSWSGGVFEKNGEVYSPS 322 (656)
T ss_dssp CEEEECT-TSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSS-CEEEEC-TTSCEEEECCCCCSSSCCCCEEEEETT
T ss_pred ccccCCC-CCCEEEeCCCCCCceEEecCcCCceeECCCCCccccc-cceEEe-cCCeEEEEeCcccCCcccccceEeCCC
Confidence 3466777 8899999984 56899999988765543222121222 233333 5888989888 44 569999998
Q ss_pred CCCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEEC---------CCcEEEEECCCCcEEEEEcccCC-------
Q 003822 530 HMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY---------SKNIALYDINSGRRLQVFADMHK------- 593 (793)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~---------Dg~I~IWDl~tg~~l~~~~~gh~------- 593 (793)
+..-...............+ .. .+..++..++.++. ...+..||..+........ .+.
T Consensus 323 t~~W~~~~~~~~~p~~~~~~-~~----~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~-~~~~~~~~~~ 396 (656)
T 1k3i_A 323 SKTWTSLPNAKVNPMLTADK-QG----LYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAG-KRQSNRGVAP 396 (656)
T ss_dssp TTEEEEETTSCSGGGCCCCT-TG----GGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEE-ECEETTEECC
T ss_pred CCcceeCCCccccccccccc-cc----eeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCC-ccccccccCC
Confidence 75432110000000000000 00 00122333344433 3467889998776443332 111
Q ss_pred --CCeEEEEEcCCCCcEEEEEeCCC-----------eEEEEECCCCCccceE--EccCCCCeEEEEEecCCCEEEEEeCC
Q 003822 594 --EHINVVKFSNHSPSIFATSSFDQ-----------DVKLWDLRQKPIQPCY--TASSSKGNVMVCFSPDDHYLLVSAVD 658 (793)
Q Consensus 594 --~~V~sv~fspdg~~~LaTgs~Dg-----------~IrIWDlrt~~~~~~~--~l~~~~~~vsv~fSpdg~~Lasgs~D 658 (793)
..-.++.|...++++++.|+.++ .|.+||..+.....+. .++......++...|+|+.++.|+.+
T Consensus 397 ~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~ 476 (656)
T 1k3i_A 397 DAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQR 476 (656)
T ss_dssp CCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBS
T ss_pred CCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcc
Confidence 12345555443337888888543 6888888776443322 22222222245677899999998854
Q ss_pred -----------CeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCCCeEEEEEeC
Q 003822 659 -----------NEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNGRDYIVSGSC 703 (793)
Q Consensus 659 -----------g~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~ 703 (793)
..+.+||..+.+... +...+............++|+ +++.||.
T Consensus 477 ~~~~~~~~~~~~~v~~ydp~t~~W~~-~~~~~~~R~~hs~a~ll~dg~-v~v~GG~ 530 (656)
T 1k3i_A 477 RGIPFEDSTPVFTPEIYVPEQDTFYK-QNPNSIVRVYHSISLLLPDGR-VFNGGGG 530 (656)
T ss_dssp BCCTTCCCSBCCCCEEEEGGGTEEEE-CCCCSSCCCTTEEEEECTTSC-EEEEECC
T ss_pred cCcCcCCCCcccceEEEcCCCCceee-cCCCCCccccccHhhcCCCcE-EEecCCC
Confidence 468999998876432 221111222233445568888 7777774
No 274
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=97.85 E-value=0.0083 Score=63.20 Aligned_cols=198 Identities=9% Similarity=-0.012 Sum_probs=118.6
Q ss_pred CCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEECC--CcEEE
Q 003822 499 NSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYS--KNIAL 576 (793)
Q Consensus 499 ~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~D--g~I~I 576 (793)
.....++|. ++++++++-..++.|..||....... .+.....+.++++.+++..+++.... ..|..
T Consensus 32 ~~pegia~~-~~g~lyv~d~~~~~I~~~d~~g~~~~-----------~~~~~~~p~gia~~~dG~l~vad~~~~~~~v~~ 99 (306)
T 2p4o_A 32 TFLENLASA-PDGTIFVTNHEVGEIVSITPDGNQQI-----------HATVEGKVSGLAFTSNGDLVATGWNADSIPVVS 99 (306)
T ss_dssp CCEEEEEEC-TTSCEEEEETTTTEEEEECTTCCEEE-----------EEECSSEEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred CCcceEEEC-CCCCEEEEeCCCCeEEEECCCCceEE-----------EEeCCCCceeEEEcCCCcEEEEeccCCcceEEE
Confidence 457788987 57776666667889999987653110 11122457889998887765554433 24777
Q ss_pred EECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEECCCCCccceE--------Ec-cCCCCeEEEEEec
Q 003822 577 YDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCY--------TA-SSSKGNVMVCFSP 647 (793)
Q Consensus 577 WDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~Dg~IrIWDlrt~~~~~~~--------~l-~~~~~~vsv~fSp 647 (793)
+|..+++...............++..+.+ ..+++-..++.|.++|..++...... .. ..-..+..+ +|
T Consensus 100 ~d~~~g~~~~~~~~~~~~~~~g~~~~~~~-~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~ 176 (306)
T 2p4o_A 100 LVKSDGTVETLLTLPDAIFLNGITPLSDT-QYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KR 176 (306)
T ss_dssp EECTTSCEEEEEECTTCSCEEEEEESSSS-EEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EE
T ss_pred EcCCCCeEEEEEeCCCccccCcccccCCC-cEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--Cc
Confidence 88888775443321122334556665555 55666556889999998653111110 00 011122335 88
Q ss_pred CCCEEEEEe-CCCeEEEEEcCC-CcE--EEEEeeecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcE
Q 003822 648 DDHYLLVSA-VDNEVRQLLAVD-GRV--HLNFGITATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRR 718 (793)
Q Consensus 648 dg~~Lasgs-~Dg~I~IwDl~t-g~~--~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~ 718 (793)
++++|+++. ..+.|..|++.. ++. ...+.. ......+++.++|. ++++....+.| .+++.. |+.
T Consensus 177 dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~----~~~P~gi~vd~dG~-l~va~~~~~~V-~~~~~~-G~~ 244 (306)
T 2p4o_A 177 FGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE----QTNIDDFAFDVEGN-LYGATHIYNSV-VRIAPD-RST 244 (306)
T ss_dssp ETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE----SCCCSSEEEBTTCC-EEEECBTTCCE-EEECTT-CCE
T ss_pred CCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec----cCCCCCeEECCCCC-EEEEeCCCCeE-EEECCC-CCE
Confidence 998777665 467999999874 432 111210 12344578889987 66665666788 888864 654
No 275
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.78 E-value=0.0024 Score=76.67 Aligned_cols=243 Identities=9% Similarity=0.035 Sum_probs=134.9
Q ss_pred ceEEEEEe-CCCCCEEEEEeC-CC----eEEEEECCCC-eEEE-EEeccCCCCCEEEEEEeeCCCCEEEEEEcC-----C
Q 003822 455 RPRQFEYH-PSISCLMVFGTL-DG----EIVVVNHENE-NIVS-YIPSFGAMNSVLGLCWLKKYPSKLIAGSDN-----G 521 (793)
Q Consensus 455 ~V~~vafs-P~d~~~Lasgs~-DG----~I~VWd~~t~-~~i~-~l~~~~h~~~V~sv~fs~~~g~~Lasgs~D-----g 521 (793)
.+...+|| | |+++||.+.. +| +|+++|+.++ +.+. .+. ....++.|+ ++++.|+....| .
T Consensus 175 ~~~~~~~S~P-DG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~-----~~~~~~~Ws-pDg~~l~y~~~d~~~~~~ 247 (751)
T 2xe4_A 175 DVMEVKPAPP-EHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS-----GTNGEIVWG-PDHTSLFYVTKDETLREN 247 (751)
T ss_dssp EEEEEEECTT-TTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE-----EECSCCEEC-SSTTEEEEEEECTTCCEE
T ss_pred EEeeeEecCC-CCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc-----CceeeEEEe-cCCCEEEEEEECCCCCCC
Confidence 36788999 9 8888886543 23 5999999988 6321 111 113467897 788877777665 2
Q ss_pred cEEEEEcCCCCCcccccccCCceeEe--cCCCCeEEEEEccCCCEEEEEEC---CCcEEEEECCCCc-EE--EEEcccCC
Q 003822 522 SLKLYDIRHMPPSIRGMHYGAGTVTF--DEFDQLTSVHVNSMDELFLASGY---SKNIALYDINSGR-RL--QVFADMHK 593 (793)
Q Consensus 522 tV~vWDl~~~~~~~~~~~~~~~~~~~--~~~~~V~sv~~s~~~~~lla~g~---Dg~I~IWDl~tg~-~l--~~~~~gh~ 593 (793)
.|.++++.++...- ...+ ........+.|+|++..++..+. ...|+++|+.++. .. ..+.....
T Consensus 248 ~v~~~~lgt~~~~~--------~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~ 319 (751)
T 2xe4_A 248 KVWRHVMGKLQSED--------VCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREK 319 (751)
T ss_dssp EEEEEETTSCGGGC--------EEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCT
T ss_pred EEEEEECCCCchhc--------EEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCC
Confidence 57777876643210 1111 11233567889999988887763 4568899998762 22 44443345
Q ss_pred CCeEEEEEcCCCCcEEEEEeCC----CeEEEEECCCC-Cccc-eEEccCCCCeEEEEEecCCCEE-EEEeCCCe--EEEE
Q 003822 594 EHINVVKFSNHSPSIFATSSFD----QDVKLWDLRQK-PIQP-CYTASSSKGNVMVCFSPDDHYL-LVSAVDNE--VRQL 664 (793)
Q Consensus 594 ~~V~sv~fspdg~~~LaTgs~D----g~IrIWDlrt~-~~~~-~~~l~~~~~~vsv~fSpdg~~L-asgs~Dg~--I~Iw 664 (793)
.....+.|+..+ .+++.+..+ ..|..+|+.+. .... +. .......--.+++.+..| ++...++. |.++
T Consensus 320 ~~~~s~~~~~g~-~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li--~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~ 396 (751)
T 2xe4_A 320 GVRYDVQMHGTS-HLVILTNEGGAVNHKLLIAPRGQPSDWSHVLV--DHSEDVFMESIAVRSNYLVVAGRRAGLTRIWTM 396 (751)
T ss_dssp TCCEEEEEETTT-EEEEEECTTTCTTCEEEEEETTSTTCCCCEEE--CCCSSEEEEEEEECSSEEEEEEEETTEEEEEEE
T ss_pred CceEEEeeeeCC-EEEEEeCCCCCCCcEEEEEcCCCcccceeeEE--CCCCCcEEEEEEEECCEEEEEEEeCCEEEEEEE
Confidence 566677765444 556665554 35777777642 2222 22 222222212344445555 44555664 5566
Q ss_pred Ec-------CCCcEEEEEeeecCCCCCcEEEEE----eeCCCeEEEEEeCC---CcEEEEEEcCCCcE
Q 003822 665 LA-------VDGRVHLNFGITATGSSQNYTRSY----YLNGRDYIVSGSCD---EHVVRICCAQTGRR 718 (793)
Q Consensus 665 Dl-------~tg~~~~~l~~~~~~~~~v~s~af----spdg~~~L~Sgs~D---g~II~IWDv~tg~~ 718 (793)
++ .+++....+.. .....+..+.+ ++++..++++.+.. ..+ ..+|+.+++.
T Consensus 397 dl~~~~~~~~~g~~~~~l~l--~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~-~~~d~~~~~~ 461 (751)
T 2xe4_A 397 MADSQDGVFKAGTGLREVVM--EEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTW-FDVSPQDHSR 461 (751)
T ss_dssp ECCTTTSCCCTTTCCEECCC--CCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEE-EEECTTTCCE
T ss_pred ecccccccccCCccceEECC--CCceeEEEeccCcccCCCCCEEEEEEeCCCCCCEE-EEEECCCCcE
Confidence 65 34441233321 11111222222 34665466665544 245 7778877764
No 276
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.77 E-value=0.016 Score=61.80 Aligned_cols=227 Identities=8% Similarity=0.035 Sum_probs=141.2
Q ss_pred CCeEEEEECCCCe--EEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcccccccCCceeEecCCCC
Q 003822 475 DGEIVVVNHENEN--IVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQ 552 (793)
Q Consensus 475 DG~I~VWd~~t~~--~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~~~~~~~~~~~~~~~~~~ 552 (793)
...|+..+++... ....+. ....+.+++|.+.++.++++-...+.|..++........ .+.......
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~---~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~--------~~~~~~l~~ 80 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVG---GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQ--------NVVVSGLLS 80 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEE---EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCC--------EEEEECCSC
T ss_pred cCeEEEEECCCCceEEEEEec---CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceE--------EEEcCCCCC
Confidence 4679999988653 222221 123577899985455566666677889999987653210 111122244
Q ss_pred eEEEEEccCCCEEEEEE-CCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEe-CCCeEEEEECCCCCccc
Q 003822 553 LTSVHVNSMDELFLASG-YSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSS-FDQDVKLWDLRQKPIQP 630 (793)
Q Consensus 553 V~sv~~s~~~~~lla~g-~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs-~Dg~IrIWDlrt~~~~~ 630 (793)
..++++.+.++.++.+. ..+.|.++++........+. ........+++.|.++.++++-. ..+.|...++......
T Consensus 81 p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~-~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~- 158 (318)
T 3sov_A 81 PDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFW-QELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRF- 158 (318)
T ss_dssp CCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC-SSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCE-
T ss_pred ccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEe-CCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeE-
Confidence 67888877777776665 46889999987543333333 24456789999997645555543 3578988888754322
Q ss_pred eEEccCCCCeEEEEEecCCCEEEEEe-CCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEE
Q 003822 631 CYTASSSKGNVMVCFSPDDHYLLVSA-VDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNGRDYIVSGSCDEHVVR 709 (793)
Q Consensus 631 ~~~l~~~~~~vsv~fSpdg~~Lasgs-~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~ 709 (793)
.....+-..+..++++|++..|+.+. ..+.|..+|+..... ..+. .........+++. +..++++-...+.| .
T Consensus 159 ~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~-~~~~--~~~~~~P~glav~--~~~lywtd~~~~~V-~ 232 (318)
T 3sov_A 159 IIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNR-QAVV--KGSLPHPFALTLF--EDILYWTDWSTHSI-L 232 (318)
T ss_dssp EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEE--CSCCSCEEEEEEE--TTEEEEEETTTTEE-E
T ss_pred EEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCce-EEEe--cCCCCCceEEEEe--CCEEEEEecCCCeE-E
Confidence 22222333455799999877777665 467899999764332 3332 1223445666664 33366666666777 8
Q ss_pred EEEcCCCcEEE
Q 003822 710 ICCAQTGRRLR 720 (793)
Q Consensus 710 IWDv~tg~~l~ 720 (793)
.++..+|+...
T Consensus 233 ~~~~~~G~~~~ 243 (318)
T 3sov_A 233 ACNKYTGEGLR 243 (318)
T ss_dssp EEETTTCCSCE
T ss_pred EEECCCCCceE
Confidence 99998888766
No 277
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.73 E-value=0.01 Score=63.44 Aligned_cols=207 Identities=8% Similarity=0.033 Sum_probs=130.9
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEE-EEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCc
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIV-SYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS 534 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i-~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~ 534 (793)
+.+++|++.++.++.+-...+.|..++.+.+... ..+. ..-....++++.+..++++++-...+.|.+++++.....
T Consensus 37 ~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~--~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~ 114 (318)
T 3sov_A 37 AAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVV--SGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRK 114 (318)
T ss_dssp EEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEE--ECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred cEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEc--CCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEE
Confidence 6789999956666667677889999998765321 1111 112345567765335555566566788999998764321
Q ss_pred ccccccCCceeEecCCCCeEEEEEccCCCEEEEEEC--CCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEE
Q 003822 535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY--SKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATS 612 (793)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~--Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTg 612 (793)
. +..........+++.|.++.++.+.. .+.|...++.... ...+....-...+.++++|+++.++++-
T Consensus 115 ~---------l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~-~~~~~~~~l~~Pnglavd~~~~~lY~aD 184 (318)
T 3sov_A 115 V---------LFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS-RFIIINSEIYWPNGLTLDYEEQKLYWAD 184 (318)
T ss_dssp E---------EECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCS-CEEEECSSCSCEEEEEEETTTTEEEEEE
T ss_pred E---------EEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCC-eEEEEECCCCCccEEEEeccCCEEEEEE
Confidence 1 11122355789999888888777763 5788888887433 3333212334678999999775667776
Q ss_pred eCCCeEEEEECCCCCccceEEccCCCCeEEEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEe
Q 003822 613 SFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFG 676 (793)
Q Consensus 613 s~Dg~IrIWDlrt~~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~ 676 (793)
+..+.|..+|+.......+. ......+..+++.. +..+++-...+.|..++..+|+....+.
T Consensus 185 ~~~~~I~~~d~dG~~~~~~~-~~~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G~~~~~i~ 246 (318)
T 3sov_A 185 AKLNFIHKSNLDGTNRQAVV-KGSLPHPFALTLFE-DILYWTDWSTHSILACNKYTGEGLREIH 246 (318)
T ss_dssp TTTTEEEEEETTSCSCEEEE-CSCCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred CCCCEEEEEcCCCCceEEEe-cCCCCCceEEEEeC-CEEEEEecCCCeEEEEECCCCCceEEEe
Confidence 77889999999764333222 22233455677653 3444444567889999988887655553
No 278
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=97.73 E-value=0.00022 Score=84.21 Aligned_cols=246 Identities=9% Similarity=-0.000 Sum_probs=134.5
Q ss_pred EEEEeCCCCCEEEEEeCCC-----------eEEEEECCCCeEE--EEEeccCCCCCEEEEEEeeCCCCEEEEEE-cCCcE
Q 003822 458 QFEYHPSISCLMVFGTLDG-----------EIVVVNHENENIV--SYIPSFGAMNSVLGLCWLKKYPSKLIAGS-DNGSL 523 (793)
Q Consensus 458 ~vafsP~d~~~Lasgs~DG-----------~I~VWd~~t~~~i--~~l~~~~h~~~V~sv~fs~~~g~~Lasgs-~DgtV 523 (793)
+.++.|.++++++.|+.++ .+.+||..+++.. ..+.. .+.....++++. .++.+++.|+ .+..+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~-~~~~~~~~~~~~-~~g~lyv~GG~~~~~v 267 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVT-KHDMFCPGISMD-GNGQIVVTGGNDAKKT 267 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEEC-SCCCSSCEEEEC-TTSCEEEECSSSTTCE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCC-CCCCccccccCC-CCCCEEEeCCCCCCce
Confidence 4566665778888887643 5889999887642 22221 222333345554 6888999988 45689
Q ss_pred EEEEcCCCCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEE-CC-----CcEEEEECCCCcEEEEE----cccCC
Q 003822 524 KLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASG-YS-----KNIALYDINSGRRLQVF----ADMHK 593 (793)
Q Consensus 524 ~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g-~D-----g~I~IWDl~tg~~l~~~----~~gh~ 593 (793)
.+||..+.+-. .... ......-.++.+.+++..++.|| .+ ..+.+||..+.+....- .....
T Consensus 268 ~~yd~~t~~W~--~~~~------~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~ 339 (656)
T 1k3i_A 268 SLYDSSSDSWI--PGPD------MQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLT 339 (656)
T ss_dssp EEEEGGGTEEE--ECCC------CSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCC
T ss_pred EEecCcCCcee--ECCC------CCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCcccccccc
Confidence 99998875321 1110 00011112344446777888887 34 57999999987644320 00000
Q ss_pred CCeEEEEEcCCCCcEEEEEeCCC---------eEEEEECCCCCccceEEccC--------CCCeEEEEEec-CCCEEEEE
Q 003822 594 EHINVVKFSNHSPSIFATSSFDQ---------DVKLWDLRQKPIQPCYTASS--------SKGNVMVCFSP-DDHYLLVS 655 (793)
Q Consensus 594 ~~V~sv~fspdg~~~LaTgs~Dg---------~IrIWDlrt~~~~~~~~l~~--------~~~~vsv~fSp-dg~~Lasg 655 (793)
.. ....+..++ ..++.|+.+| .+..||..+........... .....++.|.. +++.++.|
T Consensus 340 ~~-~~~~~~~~~-~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~G 417 (656)
T 1k3i_A 340 AD-KQGLYRSDN-HAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFG 417 (656)
T ss_dssp CC-TTGGGTTTC-SCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEEC
T ss_pred cc-ccceeecCC-ceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEe
Confidence 00 001122334 4555555443 57888988764322111111 01122355554 67777777
Q ss_pred eCCC-----------eEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCCCeEEEEEeCC-----------CcEEEEEEc
Q 003822 656 AVDN-----------EVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNGRDYIVSGSCD-----------EHVVRICCA 713 (793)
Q Consensus 656 s~Dg-----------~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~D-----------g~II~IWDv 713 (793)
+.++ .+.+||..+................-...+..|+|+ +++.|+.+ ..+ .+||.
T Consensus 418 G~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~-i~v~GG~~~~~~~~~~~~~~~v-~~ydp 495 (656)
T 1k3i_A 418 GSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGS-TFITGGQRRGIPFEDSTPVFTP-EIYVP 495 (656)
T ss_dssp CBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSC-EEEECCBSBCCTTCCCSBCCCC-EEEEG
T ss_pred CCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCC-EEEECCcccCcCcCCCCcccce-EEEcC
Confidence 7432 678888877765332200111112223445667888 77777654 356 89998
Q ss_pred CCCc
Q 003822 714 QTGR 717 (793)
Q Consensus 714 ~tg~ 717 (793)
.+++
T Consensus 496 ~t~~ 499 (656)
T 1k3i_A 496 EQDT 499 (656)
T ss_dssp GGTE
T ss_pred CCCc
Confidence 7764
No 279
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.71 E-value=0.0089 Score=67.76 Aligned_cols=256 Identities=9% Similarity=0.078 Sum_probs=146.0
Q ss_pred eEEEEEeCC-CCCEEEEEeCCCeEEEEECCCCeEEEEEeccC-CCCCEEEEEE-------eeCCCCEEEEEEcCC-----
Q 003822 456 PRQFEYHPS-ISCLMVFGTLDGEIVVVNHENENIVSYIPSFG-AMNSVLGLCW-------LKKYPSKLIAGSDNG----- 521 (793)
Q Consensus 456 V~~vafsP~-d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~-h~~~V~sv~f-------s~~~g~~Lasgs~Dg----- 521 (793)
+..|+|+|. .+.++++-...+.|++.|.+++.....+.... .......++| . ++++.|+++...+
T Consensus 141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d-~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYA-DEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp EEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTB-CTTCEEEEEECCCTTGGG
T ss_pred CCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccC-CCCCEEEEEeCCCCCccc
Confidence 788999993 45566666656789999998877766554211 2345889999 7 6788666666554
Q ss_pred --cEEEEEcCCCCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEE-CCCcEEEEECC-------CCcE-------
Q 003822 522 --SLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASG-YSKNIALYDIN-------SGRR------- 584 (793)
Q Consensus 522 --tV~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g-~Dg~I~IWDl~-------tg~~------- 584 (793)
.|.+.+...... +...........+ .....++++|.++.++++. .++.|..+|+. ++..
T Consensus 220 ~~~V~~i~r~~~G~-~~~~~~~~~v~~~---~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~ 295 (496)
T 3kya_A 220 SPSVYIIKRNADGT-FDDRSDIQLIAAY---KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKN 295 (496)
T ss_dssp EEEEEEEECCTTSC-CSTTSCEEEEEEE---SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGG
T ss_pred CceEEEEecCCCCc-eeecccceeeccC---CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccc
Confidence 255665333111 1100000001123 3346778888777777766 57889999987 5543
Q ss_pred ----EEE-EcccCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEECCC--CCcc--ceEEcc-CC-------------CCeE
Q 003822 585 ----LQV-FADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQ--KPIQ--PCYTAS-SS-------------KGNV 641 (793)
Q Consensus 585 ----l~~-~~~gh~~~V~sv~fspdg~~~LaTgs~Dg~IrIWDlrt--~~~~--~~~~l~-~~-------------~~~v 641 (793)
... +..+.....+.++|+|+|..++++-+..+.|+.+|... +... .++.-. +. ..+.
T Consensus 296 ~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~ 375 (496)
T 3kya_A 296 NPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPC 375 (496)
T ss_dssp CTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEE
T ss_pred cccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCe
Confidence 112 22123455689999999932455556678899966543 2110 111111 11 1233
Q ss_pred -EEEEe-------cCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecC----------C-----------CCCcEEEEEee
Q 003822 642 -MVCFS-------PDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITAT----------G-----------SSQNYTRSYYL 692 (793)
Q Consensus 642 -sv~fS-------pdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~----------~-----------~~~v~s~afsp 692 (793)
.+... ++|...++-...+.|+.++ .+|. +.++.+... + -.....+++.+
T Consensus 376 ~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~ 453 (496)
T 3kya_A 376 QGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDD 453 (496)
T ss_dssp EEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEET
T ss_pred EEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEEC
Confidence 24444 4566666656678999998 5674 455543211 0 12355677887
Q ss_pred C-CCeEEEEEeCCCcEEEEEEcCCCcEEE
Q 003822 693 N-GRDYIVSGSCDEHVVRICCAQTGRRLR 720 (793)
Q Consensus 693 d-g~~~L~Sgs~Dg~II~IWDv~tg~~l~ 720 (793)
+ |. ++++=+...+| |.+++.....+.
T Consensus 454 ~~g~-lyVaD~~N~rI-rki~~~~~~~~~ 480 (496)
T 3kya_A 454 VKEM-FYVHDQVGHTI-RTISMEQEENVA 480 (496)
T ss_dssp TTTE-EEEEETTTTEE-EEEEECCCC---
T ss_pred CCCE-EEEEeCCCCEE-EEEECCCCcccc
Confidence 6 54 44444455566 877776655544
No 280
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=97.68 E-value=0.066 Score=64.09 Aligned_cols=251 Identities=9% Similarity=0.053 Sum_probs=142.3
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEecc-----CCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCC
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSF-----GAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRH 530 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~-----~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~ 530 (793)
|.++...+ ++. |-.|+.++-|..||..+++........ -....|.++... .++. |..|+.+ -+.+||..+
T Consensus 165 i~~i~~d~-~g~-lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d-~~g~-lwigt~~-Gl~~~d~~~ 239 (781)
T 3v9f_A 165 TWTATEAE-DGK-LYIGHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKD-TNGN-IWIGTSK-GLALFNANT 239 (781)
T ss_dssp EEEEEEEE-TTE-EEEEETTTEEEEEETTTTEEEEECC--------CCSSEEEEEEC-TTCC-EEEEETT-EEEEEETTT
T ss_pred eEEEEECC-CCC-EEEEecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEc-CCCC-EEEEeCC-cHheECCCC
Confidence 78888877 554 445676656899998877654321100 013468888753 4554 4445555 588899876
Q ss_pred CCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEc-------------ccCCCCeE
Q 003822 531 MPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFA-------------DMHKEHIN 597 (793)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~-------------~gh~~~V~ 597 (793)
++... ...............|.++... .++.+.+++..+-|.++|..+++...... ......|.
T Consensus 240 ~~~~~--~~~~~~~~~~l~~~~i~~i~~d-~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~ 316 (781)
T 3v9f_A 240 ETFTN--FHNNPGNIHGALSSYIFSIKQL-KDNKLWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASAR 316 (781)
T ss_dssp TEEEC-------------CCCCEEEEEEC-TTSEEEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEE
T ss_pred CcEEE--EEcCCCccccccCceEEEEEEC-CCCCEEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEE
Confidence 43211 1000000001123568888874 45667777775678999988765322111 12345799
Q ss_pred EEEEcCCCCcEEEEEeCCCeEEEEECCCCCccceEEc-----c---CCCCeEEEEEecCCCEEEEEeCCCeEEEEEcCCC
Q 003822 598 VVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTA-----S---SSKGNVMVCFSPDDHYLLVSAVDNEVRQLLAVDG 669 (793)
Q Consensus 598 sv~fspdg~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l-----~---~~~~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg 669 (793)
++...++| . |..|+.++-|..|+..+......... . ....+.++...++|. |.+|+.++-|..||..++
T Consensus 317 ~i~~D~~g-~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~ 393 (781)
T 3v9f_A 317 YIFQDSFN-N-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGK-LWIGTDGGGINVFENGKR 393 (781)
T ss_dssp EEEECSSC-C-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEEEETTEE
T ss_pred EEEEeCCC-C-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEEEECCCC
Confidence 99998887 3 55677777789999876532221110 0 112344577777776 566776666888997765
Q ss_pred cEEEEEeeecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEE
Q 003822 670 RVHLNFGITATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRLR 720 (793)
Q Consensus 670 ~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~ 720 (793)
....-..........+.++...++|. |..|+.++.+ ..++..+++...
T Consensus 394 ~~~~~~~~~~~~~~~v~~i~~d~~g~--lWigt~~~Gl-~~~~~~~~~~~~ 441 (781)
T 3v9f_A 394 VAIYNKENRELLSNSVLCSLKDSEGN--LWFGTYLGNI-SYYNTRLKKFQI 441 (781)
T ss_dssp EEECC-----CCCSBEEEEEECTTSC--EEEEETTEEE-EEECSSSCEEEE
T ss_pred eEEEccCCCCCCCcceEEEEECCCCC--EEEEeccCCE-EEEcCCCCcEEE
Confidence 43211100011234566666666775 5667776677 889988776443
No 281
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.66 E-value=0.091 Score=55.89 Aligned_cols=242 Identities=10% Similarity=0.098 Sum_probs=152.0
Q ss_pred EEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCccccc
Q 003822 459 FEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGM 538 (793)
Q Consensus 459 vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~~~~ 538 (793)
.-.|| ..+.+|.-. ..++.|+|+++.+.+..... ...|.-=.|. +.+.|+-.+. ..|.-|+++......+..
T Consensus 72 AIMnP-~~~ViALra-g~~LQiFnletK~klks~~~---~e~VvfWkWi--s~~~L~lVT~-taVyHWs~~~~s~P~kvF 143 (365)
T 2xzh_A 72 AIMNP-ASKVIALKA-GKTLQIFNIEMKSKMKAHTM---TDDVTFWKWI--SLNTVALVTD-NAVYHWSMEGESQPVKMF 143 (365)
T ss_dssp EEECS-SSSEEEEEE-TTEEEEEETTTTEEEEEEEC---SSCEEEEEEC--SSSEEEEEES-SEEEEEESSTTCCCEEEE
T ss_pred eeeCC-CccEEEEec-CCeEEEechHHhhhhcceec---CCccEEEEec--CCCeEEEEcC-CcEEEEcccCCCCCceee
Confidence 44688 677888776 67899999999998888764 3567777785 5567766654 589999998644332222
Q ss_pred ccCCceeEecCCCCeEEEEEccCCCEEEEEEC-------CCcEEEEECCCCcEEEEEcccCCCCeEEEEEcC--CCCcEE
Q 003822 539 HYGAGTVTFDEFDQLTSVHVNSMDELFLASGY-------SKNIALYDINSGRRLQVFADMHKEHINVVKFSN--HSPSIF 609 (793)
Q Consensus 539 ~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~-------Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fsp--dg~~~L 609 (793)
..+... ...+|..-..+++...++..|- .|.+.+|..+.+ .-+.+. ||.+.-..+.... ....+|
T Consensus 144 dR~~~L----~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ie-Ghaa~F~~~~~~g~~~~~~lf 217 (365)
T 2xzh_A 144 DRHSSL----AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIE-GHAASFAQFKMEGNAEESTLF 217 (365)
T ss_dssp ECCGGG----TTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-EEEEEC-CSEEEEEEECCTTCSSCEEEE
T ss_pred ecchhc----ccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeeccc-ccceee-eeeeeeEEEecCCCCCCceEE
Confidence 211111 1245677777777777766651 267889988844 344555 6765443333321 111344
Q ss_pred EEEeC---CCeEEEEECCCC-CccceE-------Ecc---CCCCeEEEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEE
Q 003822 610 ATSSF---DQDVKLWDLRQK-PIQPCY-------TAS---SSKGNVMVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNF 675 (793)
Q Consensus 610 aTgs~---Dg~IrIWDlrt~-~~~~~~-------~l~---~~~~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l 675 (793)
+.+.. .+.++|-++... ...+.+ .++ ..+-++++..|+.-..++.-+.-|.+++||+.+|.++..-
T Consensus 218 ~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~i~~n 297 (365)
T 2xzh_A 218 CFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMN 297 (365)
T ss_dssp EEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred EEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccCcEEEEe
Confidence 44443 257999998543 111111 111 2345678899998899999999999999999999998877
Q ss_pred eeecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEE
Q 003822 676 GITATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRL 719 (793)
Q Consensus 676 ~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l 719 (793)
.+ ....+...+...... -++.....|.| .--.+.....+
T Consensus 298 rI---S~d~iF~ta~~~~~~-Gi~~Vnr~GqV-l~v~v~~~~iv 336 (365)
T 2xzh_A 298 RI---SGETIFVTAPHEATA-GIIGVNRKGQV-LSVCVEEENII 336 (365)
T ss_dssp EC---CSSCEEEEEEEGGGT-EEEEEETTCEE-EEEEECTTTHH
T ss_pred cc---CCCceEEecccCCCC-cEEEEcCCCEE-EEEEECcccEe
Confidence 64 334455555544433 35666678877 44445444443
No 282
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.64 E-value=0.045 Score=65.74 Aligned_cols=238 Identities=9% Similarity=0.017 Sum_probs=142.4
Q ss_pred EEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcccccccCCceeEe
Q 003822 468 LMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTF 547 (793)
Q Consensus 468 ~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~~~~~~~~~~~~~ 547 (793)
+|+.+ ....|+..++........+. ....+.+|+|.+..+.++++-...+.|+.+++...... .....+..
T Consensus 397 ~Ll~a-n~~~Ir~i~l~~~~~~~l~~---~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~-----~~~~~vi~ 467 (791)
T 3m0c_C 397 YLFFT-NRHEVRKMTLDRSEYTSLIP---NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV-----SSYDTVIS 467 (791)
T ss_dssp EEEEE-CBSSEEEECTTSCCCEEEEC---SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC-------------CEEEEC
T ss_pred ccccc-cccceeEeeccCCcceeeec---CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCC-----cceeEEEe
Confidence 44433 34568888887665544443 34568899997444555555556788988888753210 00001111
Q ss_pred cCCCCeEEEEEccCCCEEEEEE-CCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeCC-CeEEEEECCC
Q 003822 548 DEFDQLTSVHVNSMDELFLASG-YSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFD-QDVKLWDLRQ 625 (793)
Q Consensus 548 ~~~~~V~sv~~s~~~~~lla~g-~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~D-g~IrIWDlrt 625 (793)
.....+.+|++.+.++.|+.+. ..+.|.+.++........+. ........|++.|.++.++++-... +.|...++..
T Consensus 468 ~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~-~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG 546 (791)
T 3m0c_C 468 RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR-ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG 546 (791)
T ss_dssp SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEE-CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred cCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEe-CCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCC
Confidence 1234567888887887777776 47899999998554433333 2445689999999864666655333 7899999876
Q ss_pred CCccceEEccCCCCeEEEEEecCCCEEEEEe-CCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCCCeEEEEEeCC
Q 003822 626 KPIQPCYTASSSKGNVMVCFSPDDHYLLVSA-VDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNGRDYIVSGSCD 704 (793)
Q Consensus 626 ~~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs-~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~D 704 (793)
.... ++....-..+..|++++.+..|+.+. ..+.|..+++..... ..+......-.....+++ .+..++++-...
T Consensus 547 ~~~~-~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~-~~v~~~~~~l~~P~glav--~~~~lYwtD~~~ 622 (791)
T 3m0c_C 547 VDIY-SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAV--FEDKVFWTDIIN 622 (791)
T ss_dssp CCEE-EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECTTTTSSEEEEEE--ETTEEEEEETTT
T ss_pred CceE-EEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCce-EEEecCCCccCCCCEEEE--eCCEEEEEECCC
Confidence 5332 22222234566799998877777765 456899999864433 333211111223445555 344355555555
Q ss_pred CcEEEEEEcCCCcEEE
Q 003822 705 EHVVRICCAQTGRRLR 720 (793)
Q Consensus 705 g~II~IWDv~tg~~l~ 720 (793)
+.| ...+..+|+.+.
T Consensus 623 ~~I-~~~dk~tG~~~~ 637 (791)
T 3m0c_C 623 EAI-FSANRLTGSDVN 637 (791)
T ss_dssp TEE-EEEETTTCCCCE
T ss_pred CEE-EEEeCCCCcceE
Confidence 666 888888887766
No 283
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=97.63 E-value=0.041 Score=65.90 Aligned_cols=253 Identities=7% Similarity=-0.031 Sum_probs=143.9
Q ss_pred ceEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEe-------c-----cCCCCCEEEEEEeeCCCCEEEEEEcCCc
Q 003822 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIP-------S-----FGAMNSVLGLCWLKKYPSKLIAGSDNGS 522 (793)
Q Consensus 455 ~V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~-------~-----~~h~~~V~sv~fs~~~g~~Lasgs~Dgt 522 (793)
.|+++...+ ++. |..|+..+-|.++|..++....... . .-....|.++..- .+| .|..|+.++-
T Consensus 259 ~i~~i~~d~-~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D-~~g-~lWigt~~~G 334 (781)
T 3v9f_A 259 YIFSIKQLK-DNK-LWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQD-SFN-NIWIGTWGGG 334 (781)
T ss_dssp CEEEEEECT-TSE-EEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEEC-SSC-CEEEEEBSSC
T ss_pred eEEEEEECC-CCC-EEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEe-CCC-CEEEEecCCe
Confidence 388888887 654 5567765568899988765432211 0 0124578888753 444 4677777778
Q ss_pred EEEEEcCCCCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEc--ccCCCCeEEEE
Q 003822 523 LKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFA--DMHKEHINVVK 600 (793)
Q Consensus 523 V~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~--~gh~~~V~sv~ 600 (793)
|..|+..+......................|.++...++ +.+.+++.++-|..||..++....... ......|.++.
T Consensus 335 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~-g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~ 413 (781)
T 3v9f_A 335 INFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQ-GKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSL 413 (781)
T ss_dssp EEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTT-SCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEE
T ss_pred EEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCC-CCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEE
Confidence 888887764431111000000000012245888887544 556667767779999987543321110 12346789999
Q ss_pred EcCCCCcEEEEEeCCCeEEEEECCCCCccceEE-ccCCCCeEEEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeee-
Q 003822 601 FSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYT-ASSSKGNVMVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGIT- 678 (793)
Q Consensus 601 fspdg~~~LaTgs~Dg~IrIWDlrt~~~~~~~~-l~~~~~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~- 678 (793)
..+++ . |..|+.++-+..+|.++++...... ......+.++...++|. |.+|+. +-+..||..+++........
T Consensus 414 ~d~~g-~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~-lwigt~-~Gl~~~~~~~~~~~~~~~~~~ 489 (781)
T 3v9f_A 414 KDSEG-N-LWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKK-IWIGTH-AGVFVIDLASKKVIHHYDTSN 489 (781)
T ss_dssp ECTTS-C-EEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSE-EEEEET-TEEEEEESSSSSCCEEECTTT
T ss_pred ECCCC-C-EEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCC-EEEEEC-CceEEEeCCCCeEEecccCcc
Confidence 88777 4 4457776778999987753221110 01223444677777776 555665 56889998877653322111
Q ss_pred -cCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEE
Q 003822 679 -ATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRL 719 (793)
Q Consensus 679 -~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l 719 (793)
......+..+...++|. |..|+.++.+ ..||..+++..
T Consensus 490 ~~~~~~~i~~i~~d~~g~--lWigt~~~Gl-~~~~~~~~~~~ 528 (781)
T 3v9f_A 490 SQLLENFVRSIAQDSEGR--FWIGTFGGGV-GIYTPDMQLVR 528 (781)
T ss_dssp SSCSCSCEEEEEECTTCC--EEEEESSSCE-EEECTTCCEEE
T ss_pred cccccceeEEEEEcCCCC--EEEEEcCCCE-EEEeCCCCeEE
Confidence 00124566777777776 5556654456 78888776543
No 284
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.63 E-value=0.0086 Score=66.81 Aligned_cols=155 Identities=11% Similarity=0.114 Sum_probs=96.7
Q ss_pred CEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEEC-CC----cE
Q 003822 500 SVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY-SK----NI 574 (793)
Q Consensus 500 ~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~-Dg----~I 574 (793)
....+++.|.++..|+++...+.|+.+|...+... . ..........++++++++.++++.. ++ .+
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~--~--------~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v 207 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVS--T--------VYSGLSKVRTICWTHEADSMIITNDQNNNDRPNN 207 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEE--E--------EECCCSCEEEEEECTTSSEEEEEECCSCTTSEEE
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEE--E--------EecCCCCcceEEEeCCCCEEEEEeCCCCcccceE
Confidence 45677886313445666655578888888764321 1 1113355789999998886777764 22 23
Q ss_pred EEEECCCCcEE--EEEcccCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEECCCCCccceEEccCCCCeEEEEEecCCCEE
Q 003822 575 ALYDINSGRRL--QVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYL 652 (793)
Q Consensus 575 ~IWDl~tg~~l--~~~~~gh~~~V~sv~fspdg~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~~~~vsv~fSpdg~~L 652 (793)
.+++.. +... ..+. .......++++|+++.++++-..++.|..||..++.............+..++|+|+|++|
T Consensus 208 ~~~~~~-g~~~~~~~l~--~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~l 284 (430)
T 3tc9_A 208 YILTRE-SGFKVITELT--KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYA 284 (430)
T ss_dssp EEEEGG-GTSCSEEEEE--ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEE
T ss_pred EEEeCC-Cceeeeeeec--cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEE
Confidence 334433 3221 2222 1234567889994337777777788999999987543234444443456679999999966
Q ss_pred EEEe-CCCeEEEEEcC
Q 003822 653 LVSA-VDNEVRQLLAV 667 (793)
Q Consensus 653 asgs-~Dg~I~IwDl~ 667 (793)
+++. ..+.|..++..
T Consensus 285 yv~d~~~~~I~~~~~d 300 (430)
T 3tc9_A 285 YIVVVNQHYILRSDYD 300 (430)
T ss_dssp EEEETTTTEEEEEEEE
T ss_pred EEEECCCCEEEEEeCC
Confidence 6654 56789988765
No 285
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.54 E-value=0.03 Score=67.32 Aligned_cols=206 Identities=8% Similarity=0.017 Sum_probs=129.5
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCC----eEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCC
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENE----NIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHM 531 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~----~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~ 531 (793)
+..|+|++.++.++++-...+.|+.+++... .....+. .......+|++....++++++-...+.|.+.++...
T Consensus 426 ~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~--~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~ 503 (791)
T 3m0c_C 426 VVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS--RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 503 (791)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEEC--SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS
T ss_pred eEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEe--cCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCC
Confidence 7889999966666667677788999998753 2222222 223445667765334455566667788999998754
Q ss_pred CCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEEC--CCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEE
Q 003822 532 PPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY--SKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIF 609 (793)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~--Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~L 609 (793)
... .+.........+|++.|..+.++.+.. .+.|...++........+. ..-...+.|++.+.++.++
T Consensus 504 ~~~---------~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~-~~l~~P~GLavD~~~~~LY 573 (791)
T 3m0c_C 504 KRK---------TLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT-ENIQWPNGITLDLLSGRLY 573 (791)
T ss_dssp SEE---------EEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC-SSCSCEEEEEEETTTTEEE
T ss_pred eEE---------EEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEe-CCCCCceEEEEecCCCeEE
Confidence 321 111123345789999998888877763 3789999987444433333 3446789999998775666
Q ss_pred EEEeCCCeEEEEECCCCCccceEEccC-CCCeEEEEEecCCCEEEEEe-CCCeEEEEEcCCCcEEEEE
Q 003822 610 ATSSFDQDVKLWDLRQKPIQPCYTASS-SKGNVMVCFSPDDHYLLVSA-VDNEVRQLLAVDGRVHLNF 675 (793)
Q Consensus 610 aTgs~Dg~IrIWDlrt~~~~~~~~l~~-~~~~vsv~fSpdg~~Lasgs-~Dg~I~IwDl~tg~~~~~l 675 (793)
++-...+.|..+|+.......+..... -..++.+++. +.+|+.+. ..+.|...|..+|+.+..+
T Consensus 574 waD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~~~~I~~~dk~tG~~~~~l 639 (791)
T 3m0c_C 574 WVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVNLL 639 (791)
T ss_dssp EEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred EEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEEECCCCEEEEEeCCCCcceEEe
Confidence 665667789999997654443333211 2245556664 34555554 5678888888888655554
No 286
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.50 E-value=0.011 Score=66.04 Aligned_cols=258 Identities=9% Similarity=0.070 Sum_probs=136.0
Q ss_pred CEEEEEEeeC-CCCEEEEEEcCCcEEEEEcCCCCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEECC----Cc-
Q 003822 500 SVLGLCWLKK-YPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYS----KN- 573 (793)
Q Consensus 500 ~V~sv~fs~~-~g~~Lasgs~DgtV~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~D----g~- 573 (793)
....++|.+. +...|+.+...+.|+.+|..++.... .........++++.++++ ++++... ..
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~----------~~~~~~~P~giavd~dG~-lyVad~~~~~~~~g 208 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDI----------KTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTG 208 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEE----------ECCCCSCEEEEEECTTCC-EEEEECCSCTTSEE
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEE----------eecCCCCccEEEECCCCC-EEEEcCCCCcccce
Confidence 4567888632 24455555544889999987654311 111234578999988888 5555432 12
Q ss_pred EEEEECCCCcE-EEEEcccCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEECCCCCc-cceEEccCCCCeEEEEEecCCCE
Q 003822 574 IALYDINSGRR-LQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPI-QPCYTASSSKGNVMVCFSPDDHY 651 (793)
Q Consensus 574 I~IWDl~tg~~-l~~~~~gh~~~V~sv~fspdg~~~LaTgs~Dg~IrIWDlrt~~~-~~~~~l~~~~~~vsv~fSpdg~~ 651 (793)
+...+...+.. ...+. .......++++|+++.++++-..++.|+.+|..++.. ..+...........++|+|+|++
T Consensus 209 v~~~~~~~~~~~~~~~~--~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~ 286 (433)
T 4hw6_A 209 IYLFTRASGFTERLSLC--NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDW 286 (433)
T ss_dssp EEEECGGGTTCCEEEEE--ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSE
T ss_pred EEEEECCCCeecccccc--ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCE
Confidence 33333322211 11121 2234567889994337777766788999999986644 23333322222335999999997
Q ss_pred EEEEe-CCCeEEEEEcC--CCcE--EEEEeeecC------------CCCCcEEEEE---------eeCCCeEEEEEeCCC
Q 003822 652 LLVSA-VDNEVRQLLAV--DGRV--HLNFGITAT------------GSSQNYTRSY---------YLNGRDYIVSGSCDE 705 (793)
Q Consensus 652 Lasgs-~Dg~I~IwDl~--tg~~--~~~l~~~~~------------~~~~v~s~af---------spdg~~~L~Sgs~Dg 705 (793)
|+++. ..+.|+.++.. ++.. ...+..... .-.....+++ .++|. ++++-...+
T Consensus 287 LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~-lyvaD~~n~ 365 (433)
T 4hw6_A 287 AYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYD-FYFCDRDSH 365 (433)
T ss_dssp EEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEE-EEEEETTTT
T ss_pred EEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCc-EEEEECCCC
Confidence 66665 46789998865 3322 122222100 0123456777 45554 555555556
Q ss_pred cEEEEEEcCCCcEEEeeeecCCCCCc-cceeeeccCCccccCCccEEEEEEcCCCCceeeEeeEEEeCCCcEEEEcCC
Q 003822 706 HVVRICCAQTGRRLRDISLEGKGSGT-SMFVQSLRGDPFRDFNMSILAAYTRPSSKSEIVKVNLLASTDHCDKECSHG 782 (793)
Q Consensus 706 ~II~IWDv~tg~~l~~~~L~gh~~~~-s~~v~sl~g~~~~~h~~~V~sva~~P~~~~~iv~~~ltaS~Dg~VkvW~~~ 782 (793)
+| +.++. +|. +. ++.|..... .-+.... .+....=....++++.|.....++ .=+..+.|+..+++
T Consensus 366 ~I-~~~~~-~G~-v~--t~~G~g~~~~~G~~dG~--~~~~~~~~~P~giavd~~~g~lyV----aD~~n~rIr~i~~e 432 (433)
T 4hw6_A 366 TV-RVLTP-EGR-VT--TYAGRGNSREWGYVDGE--LRSQALFNHPTSIAYDMKRKCFYI----GDCDNHRVRKIAPE 432 (433)
T ss_dssp EE-EEECT-TSE-EE--EEECCCTTCSSCCBCEE--TTTTCBCSSEEEEEEETTTTEEEE----EEGGGTEEEEEEEC
T ss_pred EE-EEECC-CCC-EE--EEEeCCCCCccccCCCc--cccccEeCCCcEEEEECCCCEEEE----EeCCCCEEEEEecC
Confidence 66 88874 563 44 454442100 0010000 000000124678999953333222 33456777776653
No 287
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=97.48 E-value=4.1e-05 Score=74.44 Aligned_cols=107 Identities=21% Similarity=0.277 Sum_probs=85.5
Q ss_pred cceeEEeccCCchhhHHHHHhhcCCc-eeeEeecccccccccccccccceeeEEeeccccccccccccccccccccceec
Q 003822 100 QKLRVVDLHDSSFGKDFIRNLSQRGL-MCEVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLS 178 (793)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (793)
.+|+.++|.++.+.. +..+.. -. .-+.|+|+.+++..+...+.+.+|.+|+|++ ..|+.++.+.|..||+|..|+
T Consensus 19 ~~L~~L~l~~n~l~~--i~~~~~-~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~ 94 (176)
T 1a9n_A 19 VRDRELDLRGYKIPV--IENLGA-TLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNN-NRICRIGEGLDQALPDLTELI 94 (176)
T ss_dssp TSCEEEECTTSCCCS--CCCGGG-GTTCCSEEECCSSCCCEECCCCCCSSCCEEECCS-SCCCEECSCHHHHCTTCCEEE
T ss_pred CCceEEEeeCCCCch--hHHhhh-cCCCCCEEECCCCCCCcccccccCCCCCEEECCC-CcccccCcchhhcCCCCCEEE
Confidence 368888998887763 222222 22 5689999999999998888999999999995 579999999999999999999
Q ss_pred cccccchhhhHHHHHHhcCCcccceecceeeec
Q 003822 179 MCETRVGNLWTTIAALSKLPSLAELRFQNWLCC 211 (793)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (793)
+-..++..+- ....+.++|+|++|.+..+..+
T Consensus 95 L~~N~i~~~~-~~~~l~~l~~L~~L~l~~N~i~ 126 (176)
T 1a9n_A 95 LTNNSLVELG-DLDPLASLKSLTYLCILRNPVT 126 (176)
T ss_dssp CCSCCCCCGG-GGGGGGGCTTCCEEECCSSGGG
T ss_pred CCCCcCCcch-hhHhhhcCCCCCEEEecCCCCC
Confidence 9999886643 2447889999999999876543
No 288
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.47 E-value=0.042 Score=59.26 Aligned_cols=204 Identities=9% Similarity=0.135 Sum_probs=124.9
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEee---CCCC---EEEEEEc---CCcEEEEEcCCCCCcc
Q 003822 465 ISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLK---KYPS---KLIAGSD---NGSLKLYDIRHMPPSI 535 (793)
Q Consensus 465 d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~---~~g~---~Lasgs~---DgtV~vWDl~~~~~~~ 535 (793)
...+++.....+-+.|||+ +|+.+..+.. +.+..+..-+ -.+. ++++... +++|.+|++......+
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~----g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l 113 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT----GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTL 113 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECC----SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCE
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccC----CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCce
Confidence 3456666667788999999 7888888752 4566666542 1222 2333333 5789999885322222
Q ss_pred cccccCCceeEecCCCCeEEEEE--ccCCC--EEEEEECCCcEEEEECC-------CCcEEEEEcccCCCCeEEEEEcCC
Q 003822 536 RGMHYGAGTVTFDEFDQLTSVHV--NSMDE--LFLASGYSKNIALYDIN-------SGRRLQVFADMHKEHINVVKFSNH 604 (793)
Q Consensus 536 ~~~~~~~~~~~~~~~~~V~sv~~--s~~~~--~lla~g~Dg~I~IWDl~-------tg~~l~~~~~gh~~~V~sv~fspd 604 (793)
.........+ -.....+..+++ ++..+ ++++...+|.+..|++. +++.+++|. -.+.+..+...+.
T Consensus 114 ~~i~~~~~pv-~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~--lgsq~EgcvvDd~ 190 (355)
T 3amr_A 114 QSMTDPDHPI-ATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFK--MNSQTEGMAADDE 190 (355)
T ss_dssp EECSCTTSCE-ECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEE--CSSCEEEEEEETT
T ss_pred eeccccccCc-CCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEec--CCCCcceEEEcCC
Confidence 2221100000 011145666777 56444 46666678999999883 346677887 4467888889887
Q ss_pred CCcEEEEEeCCCeEEEEECCCCC---ccceEEccCC---CCeEEEEE--ecCCC-EEEEEe-CCCeEEEEEcC-CCcEEE
Q 003822 605 SPSIFATSSFDQDVKLWDLRQKP---IQPCYTASSS---KGNVMVCF--SPDDH-YLLVSA-VDNEVRQLLAV-DGRVHL 673 (793)
Q Consensus 605 g~~~LaTgs~Dg~IrIWDlrt~~---~~~~~~l~~~---~~~vsv~f--Spdg~-~Lasgs-~Dg~I~IwDl~-tg~~~~ 673 (793)
. ..|+.+-.+.-|..+|.+... ...+...... ..+-.++. .++|+ ||++++ .+++..+||.. +.+.+.
T Consensus 191 ~-g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg 269 (355)
T 3amr_A 191 Y-GRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVA 269 (355)
T ss_dssp T-TEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEE
T ss_pred C-CeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEE
Confidence 7 688888988777777755221 1233333211 12223544 56676 777777 57799999996 677777
Q ss_pred EEee
Q 003822 674 NFGI 677 (793)
Q Consensus 674 ~l~~ 677 (793)
.|.+
T Consensus 270 ~f~I 273 (355)
T 3amr_A 270 DFRI 273 (355)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 7764
No 289
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=97.46 E-value=0.09 Score=54.25 Aligned_cols=207 Identities=9% Similarity=0.056 Sum_probs=126.1
Q ss_pred CCeEEEEEccCCCEEEEEE-CCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEECCCCCc-
Q 003822 551 DQLTSVHVNSMDELFLASG-YSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPI- 628 (793)
Q Consensus 551 ~~V~sv~~s~~~~~lla~g-~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~Dg~IrIWDlrt~~~- 628 (793)
..+..++++|+++.++++. .++.|...|.. ++.++.+.-+-....-.|++.+++ .++++.-.++.+.++++.....
T Consensus 27 ~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g-~~~vs~E~~~~l~~~~v~~~~~i 104 (255)
T 3qqz_A 27 NNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDN-QFVISDERDYAIYVISLTPNSEV 104 (255)
T ss_dssp SCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTT-EEEEEETTTTEEEEEEECTTCCE
T ss_pred cCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCC-EEEEEECCCCcEEEEEcCCCCee
Confidence 4689999999888777765 57899999998 888888753233578899999887 6666655678899998866432
Q ss_pred --cceEEcc-----CCCCeEEEEEecCCCEEEEEeCCCeEEEEEcC---CCcEEEEEee----ecCCCCCcEEEEEeeCC
Q 003822 629 --QPCYTAS-----SSKGNVMVCFSPDDHYLLVSAVDNEVRQLLAV---DGRVHLNFGI----TATGSSQNYTRSYYLNG 694 (793)
Q Consensus 629 --~~~~~l~-----~~~~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~---tg~~~~~l~~----~~~~~~~v~s~afspdg 694 (793)
.....+. ...+.-.++|+|.++.|+++.......+|... .+..+..+.. ....-.....+++.|..
T Consensus 105 ~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~t 184 (255)
T 3qqz_A 105 KILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQK 184 (255)
T ss_dssp EEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTT
T ss_pred eeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCC
Confidence 1122221 12233469999999888887765544555443 1111111211 01122356788999988
Q ss_pred CeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCCCCccceeeeccCCccccCCccEEEEEEcCCCCceeeEeeEEEeCCC
Q 003822 695 RDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKSEIVKVNLLASTDH 774 (793)
Q Consensus 695 ~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~~~~iv~~~ltaS~Dg 774 (793)
..+++.......+ .++|.. |+.+..+.|.+...+ +..-....-++++.|++ + +. ++|...
T Consensus 185 g~lliLS~~s~~L-~~~d~~-g~~~~~~~L~~g~~~------------l~~~~~qpEGia~d~~G-~-ly----IvsE~n 244 (255)
T 3qqz_A 185 NTLLVLSHESRAL-QEVTLV-GEVIGEMSLTKGSRG------------LSHNIKQAEGVAMDASG-N-IY----IVSEPN 244 (255)
T ss_dssp TEEEEEETTTTEE-EEECTT-CCEEEEEECSTTGGG------------CSSCCCSEEEEEECTTC-C-EE----EEETTT
T ss_pred CeEEEEECCCCeE-EEEcCC-CCEEEEEEcCCccCC------------cccccCCCCeeEECCCC-C-EE----EEcCCc
Confidence 7455555555555 888865 667775555532100 00001135679999975 2 33 566665
Q ss_pred cEEEE
Q 003822 775 CDKEC 779 (793)
Q Consensus 775 ~VkvW 779 (793)
-+..+
T Consensus 245 ~~y~f 249 (255)
T 3qqz_A 245 RFYRF 249 (255)
T ss_dssp EEEEE
T ss_pred eEEEE
Confidence 44333
No 290
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.46 E-value=0.16 Score=63.60 Aligned_cols=288 Identities=9% Similarity=0.054 Sum_probs=159.6
Q ss_pred eEEEEEeCCC-----CCEEEEEeC-CCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeC-CCCEEEEEEcCCcEEEEEc
Q 003822 456 PRQFEYHPSI-----SCLMVFGTL-DGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKK-YPSKLIAGSDNGSLKLYDI 528 (793)
Q Consensus 456 V~~vafsP~d-----~~~Lasgs~-DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~-~g~~Lasgs~DgtV~vWDl 528 (793)
|.|+++.|.. +.++|.|.. |++|+|+++.+.+.+......+ .....++..... ...+|..|-.||.+.-+.+
T Consensus 556 vscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~-~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~ 634 (1158)
T 3ei3_A 556 VACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGG-EIIPRSILMTTFESSHYLLCALGDGALFYFGL 634 (1158)
T ss_dssp EEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCS-SCCEEEEEEEEETTEEEEEEEETTSEEEEEEE
T ss_pred eEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCC-CCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEE
Confidence 8999998732 479999997 9999999999877665544422 234455554322 3357888999999877766
Q ss_pred CCCCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCCe-EEEEEcCCC-C
Q 003822 529 RHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHI-NVVKFSNHS-P 606 (793)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V-~sv~fspdg-~ 606 (793)
+.....+... ...+-...++.=..+...+..-+.+..+....+|--+ ++....-. .-..+ ....|+... +
T Consensus 635 d~~tg~l~d~-----r~~~LG~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~-~~l~~s~l--~~~~v~~~~~F~se~~~ 706 (1158)
T 3ei3_A 635 NIETGLLSDR-----KKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSN-HKLVFSNV--NLKEVNYMCPLNSDGYP 706 (1158)
T ss_dssp CTTTCCEEEE-----EEEECCSSCCEEEEEESSSCEEEEEESSSCEEEEESS-SSEEEEEB--SSSCCCEEEEECCSSST
T ss_pred cCCCCccccc-----eeEEcCCCceEEEEEeeCCceeEEEECCCCEEEEEcC-CceEEecc--ChHHhceEeccCcccCC
Confidence 5322111110 0112223344433443334433334444444444433 33332211 12223 334454321 2
Q ss_pred cEEEEEeCCCeEEEEECCCCCccceEEccCCCCeEEEEEecCCCEEEEEeCC----------------------------
Q 003822 607 SIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLVSAVD---------------------------- 658 (793)
Q Consensus 607 ~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs~D---------------------------- 658 (793)
.-++..+ ++.++|.-+.......+.+++-...+..++++|..+.++++..+
T Consensus 707 ~g~v~~~-~~~LrI~~i~~~~~~~~~~ipL~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 (1158)
T 3ei3_A 707 DSLALAN-NSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSS 785 (1158)
T ss_dssp TEEEEEC-SSCEEEEEECCSSSEEEEEEECSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECC
T ss_pred CcEEEEc-CCceEEEEecccCCeeEEEEeCCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccc
Confidence 3354333 45699988765444455555555566678999887765554311
Q ss_pred ---------------------CeEEEEEcCCCcEEEEEeeecCCCCCcEEEE---EeeCCCeEEEEEe----------CC
Q 003822 659 ---------------------NEVRQLLAVDGRVHLNFGITATGSSQNYTRS---YYLNGRDYIVSGS----------CD 704 (793)
Q Consensus 659 ---------------------g~I~IwDl~tg~~~~~l~~~~~~~~~v~s~a---fspdg~~~L~Sgs----------~D 704 (793)
+.|++.|..+++.+..+.... ...+.+++ |..+.+.+++.|. ..
T Consensus 786 ~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~--nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~ 863 (1158)
T 3ei3_A 786 SKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQ--NEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQ 863 (1158)
T ss_dssp CCCC----------CCCEEEEEEEEEEETTTCCEEEEEECCT--TEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCC
T ss_pred cccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCC--CcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCc
Confidence 246778888887776665432 23344433 2223345888886 34
Q ss_pred CcEEEEEEcCCCcEEEeeeecCCCCCccceeeeccCCccccCCccEEEEEEcCCCCceeeEeeEEEeCCCcEEEEcCCCC
Q 003822 705 EHVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKSEIVKVNLLASTDHCDKECSHGQH 784 (793)
Q Consensus 705 g~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~~~~iv~~~ltaS~Dg~VkvW~~~~~ 784 (793)
|++ +++++..+ .+. .+.. ..+ .++|.+++--. +.++++-+.+|++|+.+.+
T Consensus 864 Gri-~vf~v~~~-kL~--lv~~---------~~v--------~g~v~al~~~~--------g~Lla~ig~~l~vy~l~~~ 914 (1158)
T 3ei3_A 864 GRI-VVFQYSDG-KLQ--TVAE---------KEV--------KGAVYSMVEFN--------GKLLASINSTVRLYEWTTE 914 (1158)
T ss_dssp EEE-EEEEEETT-EEE--EEEE---------EEE--------SSCEEEEEEET--------TEEEEEETTEEEEEEECTT
T ss_pred eEE-EEEEEECC-EEE--EEEE---------EEc--------CCcCEEEeeeC--------CEEEEEcCCEEEEEECCCC
Confidence 678 89988733 333 1111 111 24677766443 2346777788999988765
No 291
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.44 E-value=0.13 Score=60.23 Aligned_cols=232 Identities=7% Similarity=-0.007 Sum_probs=147.1
Q ss_pred EEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcccccccCCceeEe
Q 003822 468 LMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTF 547 (793)
Q Consensus 468 ~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~~~~~~~~~~~~~ 547 (793)
+|+.+ ..+.|+..++++......++. ..-..+.+++|.+.++..+++-..++.|..+++....... +..
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~~~~~~~-~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~---------v~~ 76 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNNNVAIPL-TGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEH---------VVE 76 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTCEEECCC-CSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE---------EEC
T ss_pred EEEEE-eCCcEEEEECCCCCcceEEEc-CCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEE---------EEe
Confidence 44444 467899999987655444443 2345688999985455555565677899999887643211 111
Q ss_pred cCCCCeEEEEEccCCCEEEEEE-CCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEE-eCCCeEEEEECCC
Q 003822 548 DEFDQLTSVHVNSMDELFLASG-YSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATS-SFDQDVKLWDLRQ 625 (793)
Q Consensus 548 ~~~~~V~sv~~s~~~~~lla~g-~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTg-s~Dg~IrIWDlrt 625 (793)
.....+.++++.+.++.++.+. ..+.|.+.++........+. ..-.....+++.|..+.+++|- +..+.|...++..
T Consensus 77 ~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~-~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG 155 (628)
T 4a0p_A 77 FGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVW-KDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDG 155 (628)
T ss_dssp SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEEC-SSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred CCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEe-CCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCC
Confidence 1123467888877777777766 46889999987544333332 2445678999999654666654 2356788888876
Q ss_pred CCccceEEccCCCCeEEEEEecCCCEEEEEe-CCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCCCeEEEEEeCC
Q 003822 626 KPIQPCYTASSSKGNVMVCFSPDDHYLLVSA-VDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNGRDYIVSGSCD 704 (793)
Q Consensus 626 ~~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs-~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~D 704 (793)
.....+. ..-..+..++++++++.|+.+. ..+.|..+|+..... ..+. ........+++.. +. ++++-...
T Consensus 156 ~~~~~l~--~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~---~~l~~P~glav~~-~~-ly~tD~~~ 227 (628)
T 4a0p_A 156 SERTTLV--PNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIA---DDLPHPFGLTQYQ-DY-IYWTDWSR 227 (628)
T ss_dssp CSCEEEE--CSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEE---ECCSCEEEEEEET-TE-EEEEETTT
T ss_pred CceEEEE--CCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEee---ccCCCceEEEEEC-CE-EEEecCCC
Confidence 5433332 3445666799999887777765 467899999865443 2232 1233456666654 32 55555556
Q ss_pred CcEEEEEEcCCCcEEE
Q 003822 705 EHVVRICCAQTGRRLR 720 (793)
Q Consensus 705 g~II~IWDv~tg~~l~ 720 (793)
+.| ...|..+|+...
T Consensus 228 ~~I-~~~dk~tg~~~~ 242 (628)
T 4a0p_A 228 RSI-ERANKTSGQNRT 242 (628)
T ss_dssp TEE-EEEETTTCCSCE
T ss_pred CEE-EEEECCCCCceE
Confidence 777 888888886554
No 292
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.43 E-value=0.18 Score=55.70 Aligned_cols=243 Identities=9% Similarity=0.095 Sum_probs=153.2
Q ss_pred EEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcccc
Q 003822 458 QFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRG 537 (793)
Q Consensus 458 ~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~~~ 537 (793)
+.-.|| ..+.+|.-. ..++.|+|+++.+.+..... ...|.-=.|. +.+.|+-.+ +..|.-|+++......+.
T Consensus 70 sAIMnP-~~~iiALra-g~~lQiFnle~K~klks~~~---~e~VvfWkWi--s~~~l~lVT-~taVyHWsi~~~s~P~kv 141 (494)
T 1bpo_A 70 SAIMNP-ASKVIALKA-GKTLQIFNIEMKSKMKAHTM---TDDVTFWKWI--SLNTVALVT-DNAVYHWSMEGESQPVKM 141 (494)
T ss_dssp EEEECS-SSSCEEEEE-TTEEEEEETTTTEEEEEEEC---SSCCCEEEEE--ETTEEEEEC-SSEEEEEESSSSCCCEEE
T ss_pred eeeeCC-CCcEEEEec-CCeEEEEchHHhhhhcceec---CCCceEEEec--CCCeEEEEc-CCeeEEecccCCCCchhh
Confidence 345788 667777765 78999999999998887764 3456666786 455666665 458999999764333222
Q ss_pred cccCCceeEecCCCCeEEEEEccCCCEEEEEEC-------CCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCC--CCcE
Q 003822 538 MHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY-------SKNIALYDINSGRRLQVFADMHKEHINVVKFSNH--SPSI 608 (793)
Q Consensus 538 ~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~-------Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspd--g~~~ 608 (793)
..-+... ...+|..-..+++...++..|- .|.+.+|..+.+. -+.+. ||.+.-..+....+ ...+
T Consensus 142 FdR~~~L----~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~-sQ~ie-Ghaa~F~~~~~~g~~~~~~l 215 (494)
T 1bpo_A 142 FDRHSSL----AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIE-GHAASFAQFKMEGNAEESTL 215 (494)
T ss_dssp EECCGGG----TTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCC-EEEEC-CSEEEEEEEECTTCSSEEEE
T ss_pred eecchhc----ccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccc-cchhe-eeeeeeEEEecCCCCCCceE
Confidence 2211111 1255777777778887776651 3678899888543 34455 67665544444311 1134
Q ss_pred EEEEeCC---CeEEEEECCCC-Cccc-----eEE--cc---CCCCeEEEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEE
Q 003822 609 FATSSFD---QDVKLWDLRQK-PIQP-----CYT--AS---SSKGNVMVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLN 674 (793)
Q Consensus 609 LaTgs~D---g~IrIWDlrt~-~~~~-----~~~--l~---~~~~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~ 674 (793)
++.+... +.++|-++... ...+ ... ++ ..+-++++..|+.-..++.-+.-|.+++||+.+|.++..
T Consensus 216 f~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~ 295 (494)
T 1bpo_A 216 FCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYM 295 (494)
T ss_dssp EEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEE
T ss_pred EEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeee
Confidence 5555543 78999998543 1111 111 11 234567899999999999999999999999999999877
Q ss_pred EeeecCCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEE
Q 003822 675 FGITATGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRL 719 (793)
Q Consensus 675 l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l 719 (793)
-.+ ....+...+...... -++.....|.| .--.+.....+
T Consensus 296 nrI---s~~~iF~t~~~~~~~-Gi~~Vnr~GqV-l~v~v~e~~iv 335 (494)
T 1bpo_A 296 NRI---SGETIFVTAPHEATA-GIIGVNRKGQV-LSVCVEEENII 335 (494)
T ss_dssp EEC---CSSCEEEEEEETTTT-EEEEEETTCEE-EEEEECTTTHH
T ss_pred ecc---cCCceEEecccCCCC-cEEEEccCceE-EEEEEccccch
Confidence 664 334455555554444 46666678877 44445444443
No 293
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.41 E-value=0.0088 Score=71.66 Aligned_cols=198 Identities=10% Similarity=0.038 Sum_probs=111.9
Q ss_pred CEEEEEEeeCCCCEEEEEEc-CC----cEEEEEcCCC-CCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEECC--
Q 003822 500 SVLGLCWLKKYPSKLIAGSD-NG----SLKLYDIRHM-PPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYS-- 571 (793)
Q Consensus 500 ~V~sv~fs~~~g~~Lasgs~-Dg----tV~vWDl~~~-~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~D-- 571 (793)
.+...+|+|++|++||.+.. +| +|+++|+.++ +.... .+.. ...++.|+|++..++.+..+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-------~~~~----~~~~~~WspDg~~l~y~~~d~~ 243 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-------KVSG----TNGEIVWGPDHTSLFYVTKDET 243 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-------CEEE----ECSCCEECSSTTEEEEEEECTT
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-------cccC----ceeeEEEecCCCEEEEEEECCC
Confidence 57788886368887775543 33 4999999987 52111 0111 12467898998888887754
Q ss_pred ---CcEEEEECCCCcE--EEEEcccCCCCeEEEEEcCCCCcEEEEEe-C--CCeEEEEECCCCCccc--eEEccCCCC-e
Q 003822 572 ---KNIALYDINSGRR--LQVFADMHKEHINVVKFSNHSPSIFATSS-F--DQDVKLWDLRQKPIQP--CYTASSSKG-N 640 (793)
Q Consensus 572 ---g~I~IWDl~tg~~--l~~~~~gh~~~V~sv~fspdg~~~LaTgs-~--Dg~IrIWDlrt~~~~~--~~~l~~~~~-~ 640 (793)
..|+++++.++.. ...+..........+.|+|+| ++|+..+ . ...|.++|+.++.... ......... .
T Consensus 244 ~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg-~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~ 322 (751)
T 2xe4_A 244 LRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADT-NTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVR 322 (751)
T ss_dssp CCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTS-SEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCC
T ss_pred CCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCC-CEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCce
Confidence 3688899987642 233332233456788999999 5555444 2 3458889998753222 222222222 2
Q ss_pred EEEEEecCCCEEEEEe-CC----CeEEEEEcCCCcEEEE-EeeecCCCCCcEEEEEeeCCCeEEEEEeCCCcE-EEEEEc
Q 003822 641 VMVCFSPDDHYLLVSA-VD----NEVRQLLAVDGRVHLN-FGITATGSSQNYTRSYYLNGRDYIVSGSCDEHV-VRICCA 713 (793)
Q Consensus 641 vsv~fSpdg~~Lasgs-~D----g~I~IwDl~tg~~~~~-l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~I-I~IWDv 713 (793)
.++.|+. |..|+..+ .+ ..|..+|+.++..... +. .+...+....+.+.+..++++...++.. |+++++
T Consensus 323 ~s~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li---~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 323 YDVQMHG-TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLV---DHSEDVFMESIAVRSNYLVVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp EEEEEET-TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEE---CCCSSEEEEEEEECSSEEEEEEEETTEEEEEEEEC
T ss_pred EEEeeee-CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEE---CCCCCcEEEEEEEECCEEEEEEEeCCEEEEEEEec
Confidence 2344443 66555544 33 3677778765311111 11 1222233344556666577778888854 255564
No 294
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.37 E-value=0.026 Score=61.05 Aligned_cols=235 Identities=10% Similarity=0.062 Sum_probs=123.6
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEE--EEEec-cCCCCCEEEEEEeeCC---CCEEEEEEc-C-----CcE
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIV--SYIPS-FGAMNSVLGLCWLKKY---PSKLIAGSD-N-----GSL 523 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i--~~l~~-~~h~~~V~sv~fs~~~---g~~Lasgs~-D-----gtV 523 (793)
++.++|.| ++.++++ ..+|.|++++ +++.. ..+.. .........|+|+ ++ +..|+++.. . +.|
T Consensus 33 P~~ia~~p-dG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~-pdf~~~g~lYv~~~~~~~~~~~~v 107 (352)
T 2ism_A 33 PWALAFLP-DGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALH-PRFPQEPYVYAYRTVAEGGLRNQV 107 (352)
T ss_dssp EEEEEECT-TSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEEC-TTTTTSCEEEEEEEECTTSSEEEE
T ss_pred ceEEEEcC-CCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEEC-CCCCCCCEEEEEEecCCCCCccEE
Confidence 89999999 8875555 5669999998 44432 22211 1224568899997 55 344544433 2 567
Q ss_pred EEEEcCCCCCcccccccCCceeE-ec----CCCCeEEEEEccCCCEEEEEECC-------------CcEEEEECCCC---
Q 003822 524 KLYDIRHMPPSIRGMHYGAGTVT-FD----EFDQLTSVHVNSMDELFLASGYS-------------KNIALYDINSG--- 582 (793)
Q Consensus 524 ~vWDl~~~~~~~~~~~~~~~~~~-~~----~~~~V~sv~~s~~~~~lla~g~D-------------g~I~IWDl~tg--- 582 (793)
..|+...... ... ...+. +. .......++|.|++..+++.+.. |.|.-+|....
T Consensus 108 ~r~~~~~~~~--~~~---~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~ 182 (352)
T 2ism_A 108 VRLRHLGERG--VLD---RVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAP 182 (352)
T ss_dssp EEEEECSSCE--EEE---EEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCT
T ss_pred EEEEeCCCCc--Cce---EEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCC
Confidence 7787764321 000 00000 11 11224688998888666665432 45555555420
Q ss_pred ---------cEEEEEcccCCCCeEEEEEcCCCCcEEEEEeCCCeE------EEEECCCCC----------------ccce
Q 003822 583 ---------RRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQDV------KLWDLRQKP----------------IQPC 631 (793)
Q Consensus 583 ---------~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~Dg~I------rIWDlrt~~----------------~~~~ 631 (793)
.....+..+| .....++|+|+.+.++++-...+.+ .|.-+..+. ..+.
T Consensus 183 ~npf~~~~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~ 261 (352)
T 2ism_A 183 GNPFLGRRGARPEVYSLGH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPL 261 (352)
T ss_dssp TCTTTTCTTSCTTEEEECC-SEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCS
T ss_pred CCcccCCCCCCccEEEEcC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCe
Confidence 1111122123 2356789999433666654433321 122222221 1344
Q ss_pred EEccCCCCeEEEEEecCCCEEEEEeCCCeEEEEEcCCCcE------EEEEeeecCCCCCcEEEEEeeCCCeEEEEEeCCC
Q 003822 632 YTASSSKGNVMVCFSPDDHYLLVSAVDNEVRQLLAVDGRV------HLNFGITATGSSQNYTRSYYLNGRDYIVSGSCDE 705 (793)
Q Consensus 632 ~~l~~~~~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~------~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg 705 (793)
.....+..+..++| .+|..+++.-..+.|...++..... ...+- .....+..+++.|||..|+++.+.+|
T Consensus 262 ~~~~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~---~~~~rp~~v~~~pdG~lyv~~~~~~g 337 (352)
T 2ism_A 262 YFWPQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETAL---SGFGRLREVQVGPDGALYVTTSNRDG 337 (352)
T ss_dssp EECTTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEE---ESSCCEEEEEECTTSCEEEEECSTTT
T ss_pred EecCCCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheec---ccCCCeeEEEECCCCcEEEEEeCCCC
Confidence 45544555556777 4676665555667787777654321 11121 12346788999999985555544444
No 295
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.35 E-value=0.083 Score=61.83 Aligned_cols=203 Identities=6% Similarity=0.059 Sum_probs=132.1
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcc
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSI 535 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~ 535 (793)
+..++|++.++.++.+-..++.|..++++.......+.. + ......+++....+++.++-...+.|.+.++.......
T Consensus 39 ~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~-g-~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~ 116 (628)
T 4a0p_A 39 ASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEF-G-LDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQV 116 (628)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS-S-CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEE
T ss_pred eEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeC-C-CCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEE
Confidence 789999996666666777789999999876544433331 1 23455677643345555665567889999987643211
Q ss_pred cccccCCceeEecCCCCeEEEEEccCCCEEEEEEC--CCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEe
Q 003822 536 RGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY--SKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSS 613 (793)
Q Consensus 536 ~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~--Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs 613 (793)
+.........++++.|..+.++.+.. .+.|...++........+. .-...+.+++++++..++++-.
T Consensus 117 ---------l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~--~~~~P~GlalD~~~~~LY~aD~ 185 (628)
T 4a0p_A 117 ---------LVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVP--NVGRANGLTIDYAKRRLYWTDL 185 (628)
T ss_dssp ---------EECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC--SCSSEEEEEEETTTTEEEEEET
T ss_pred ---------EEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEEC--CCCCcceEEEccccCEEEEEEC
Confidence 11122355789999988888877763 5778888887444333333 4467889999998756666666
Q ss_pred CCCeEEEEECCCCCccceEEccCCCCeEEEEEecCCCEEEEEe-CCCeEEEEEcCCCcEEEEE
Q 003822 614 FDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLVSA-VDNEVRQLLAVDGRVHLNF 675 (793)
Q Consensus 614 ~Dg~IrIWDlrt~~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs-~Dg~I~IwDl~tg~~~~~l 675 (793)
..+.|..+|+...... +.. ..-..+..+++.. + .|+.+. ..+.|...|..+|+....+
T Consensus 186 ~~~~I~~~d~dG~~~~-v~~-~~l~~P~glav~~-~-~ly~tD~~~~~I~~~dk~tg~~~~~l 244 (628)
T 4a0p_A 186 DTNLIESSNMLGLNRE-VIA-DDLPHPFGLTQYQ-D-YIYWTDWSRRSIERANKTSGQNRTII 244 (628)
T ss_dssp TTTEEEEEETTSCSCE-EEE-ECCSCEEEEEEET-T-EEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred CCCEEEEEcCCCCceE-Eee-ccCCCceEEEEEC-C-EEEEecCCCCEEEEEECCCCCceEEE
Confidence 7788999999775432 222 2334556677764 3 455444 5788999998777643333
No 296
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.29 E-value=0.073 Score=57.58 Aligned_cols=239 Identities=12% Similarity=0.055 Sum_probs=123.9
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCe-EEEEEec-cCCCCCEEEEEEeeCC---CCEEEEEEc----C----Cc
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENEN-IVSYIPS-FGAMNSVLGLCWLKKY---PSKLIAGSD----N----GS 522 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~-~i~~l~~-~~h~~~V~sv~fs~~~---g~~Lasgs~----D----gt 522 (793)
++.|+|.| ++++++ +..+|.|++++ .+++ .+..+.. .........|+++ ++ +..|+++.. + ..
T Consensus 31 P~~ia~~p-dG~l~V-~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~-pdf~~~g~lyv~~~~~~~~~~~~~~ 106 (354)
T 3a9g_A 31 PWSIAPLG-GGRYLV-TERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALH-PEFPKKSWVYLYASYFAEGGHIRNR 106 (354)
T ss_dssp EEEEEEEE-TTEEEE-EETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEEC-TTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred CeEEEEcC-CCeEEE-EeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeC-CCCCcCCEEEEEEeccCCCCCcceE
Confidence 89999999 776554 55669999997 3454 2222211 1223568899997 44 344444432 3 56
Q ss_pred EEEEEcCCCCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEECC-------------CcEEEEECCCCc------
Q 003822 523 LKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYS-------------KNIALYDINSGR------ 583 (793)
Q Consensus 523 V~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~D-------------g~I~IWDl~tg~------ 583 (793)
|..|+.......+....................++|.|++..+++.+.. |.|.-++.. ++
T Consensus 107 v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~d-G~~p~~np 185 (354)
T 3a9g_A 107 VIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEE-GRPPADNP 185 (354)
T ss_dssp EEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTT-SCCCTTSS
T ss_pred EEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCC-CCCCCCCC
Confidence 7777766532111100000000000111234678898888766665532 345555544 22
Q ss_pred --EEEEEcccCCCCeEEEEEcCCCCcEEEEEeCCC---eEEEEECCC--------C------CccceEEc-cCCCCeEEE
Q 003822 584 --RLQVFADMHKEHINVVKFSNHSPSIFATSSFDQ---DVKLWDLRQ--------K------PIQPCYTA-SSSKGNVMV 643 (793)
Q Consensus 584 --~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~Dg---~IrIWDlrt--------~------~~~~~~~l-~~~~~~vsv 643 (793)
....+..+|. ....++|+|+.+.++++-...+ .|.+...-. + ...++... ..+..+..+
T Consensus 186 f~~~~i~a~G~r-np~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~ 264 (354)
T 3a9g_A 186 FPNSPIWSYGHR-NPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGA 264 (354)
T ss_dssp STTCCEEEECCS-CCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEE
T ss_pred CCCCcEEEEccC-CcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcce
Confidence 0112222343 3468999994326665543322 233322100 0 01344444 344555568
Q ss_pred EEe-------cCCCEEEEEeCCCeEEEEEcCCC-cEEEEEeeecCCCCCcEEEEEeeCCCeEEEEE
Q 003822 644 CFS-------PDDHYLLVSAVDNEVRQLLAVDG-RVHLNFGITATGSSQNYTRSYYLNGRDYIVSG 701 (793)
Q Consensus 644 ~fS-------pdg~~Lasgs~Dg~I~IwDl~tg-~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sg 701 (793)
+|. .+|.++++.-..+.|...++... +......+.......+..+++.|||. +.++.
T Consensus 265 ~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~-lyv~~ 329 (354)
T 3a9g_A 265 SFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGG-ILIST 329 (354)
T ss_dssp EECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSC-EEEEE
T ss_pred EEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCc-EEEEE
Confidence 883 56777666666778888888753 33211122222234678888999997 44433
No 297
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.29 E-value=0.26 Score=52.30 Aligned_cols=280 Identities=8% Similarity=-0.016 Sum_probs=140.5
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEec--cCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCC
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPS--FGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPP 533 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~--~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~ 533 (793)
+.+|.|.+ .+..+++| ..|.| +...+.|+--..+.. ......+.+|.|. + + .++.++.++.| |....+-.
T Consensus 38 ~~~v~~~~-~~~~~~~G-~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~-~-~-~~~~~g~~g~i--~~S~DgG~ 109 (327)
T 2xbg_A 38 ILDMSFID-RHHGWLVG-VNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQ-G-N-EGWIVGEPPIM--LHTTDGGQ 109 (327)
T ss_dssp EEEEEESS-SSCEEEEE-TTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEE-T-T-EEEEEEETTEE--EEESSTTS
T ss_pred EEEEEECC-CCcEEEEc-CCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEec-C-C-eEEEEECCCeE--EEECCCCC
Confidence 88899987 66677754 56765 333444432111111 1224468889885 3 3 34445566644 33333222
Q ss_pred cccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEe
Q 003822 534 SIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSS 613 (793)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs 613 (793)
......... .....+..+.+.++ +.+++++.+|.|.. ....|+.-.....++...+..+.+.|++ .+++.+.
T Consensus 110 tW~~~~~~~-----~~~~~~~~i~~~~~-~~~~~~~~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~~~-~~~~~g~ 181 (327)
T 2xbg_A 110 SWSQIPLDP-----KLPGSPRLIKALGN-GSAEMITNVGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSPSG-EYVAVSS 181 (327)
T ss_dssp SCEECCCCT-----TCSSCEEEEEEEET-TEEEEEETTCCEEE-ESSTTSSEEEEECSCCCCEEEEEECTTS-CEEEEET
T ss_pred CceECcccc-----CCCCCeEEEEEECC-CCEEEEeCCccEEE-EcCCCCCCEEeecCCCcceEEEEEcCCC-cEEEEEC
Confidence 222211100 01133566776544 45566666665432 2223433333332466788999999987 6776665
Q ss_pred CCCeEEEEECCCCCccceEEccCCCCeEEEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeee-cCCCCCcEEEEEee
Q 003822 614 FDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGIT-ATGSSQNYTRSYYL 692 (793)
Q Consensus 614 ~Dg~IrIWDlrt~~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~-~~~~~~v~s~afsp 692 (793)
..+..+-+|-......++ ..........+.+.++++.++ ++.+|.+++.+...|+.-..+... ......+..+++.+
T Consensus 182 ~G~~~~S~d~gG~tW~~~-~~~~~~~~~~~~~~~~g~~~~-~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~ 259 (327)
T 2xbg_A 182 RGSFYSTWEPGQTAWEPH-NRTTSRRLHNMGFTPDGRLWM-IVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRT 259 (327)
T ss_dssp TSSEEEEECTTCSSCEEE-ECCSSSCEEEEEECTTSCEEE-EETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESS
T ss_pred CCcEEEEeCCCCCceeEC-CCCCCCccceeEECCCCCEEE-EeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecC
Confidence 444444455311111222 222334455688999987654 455787776643324332222211 01223467788887
Q ss_pred CCCeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCCCCccceeeeccCCccccCCccEEEEEEcCCCCceeeEeeEEEeC
Q 003822 693 NGRDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKGSGTSMFVQSLRGDPFRDFNMSILAAYTRPSSKSEIVKVNLLAST 772 (793)
Q Consensus 693 dg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~~~~s~~v~sl~g~~~~~h~~~V~sva~~P~~~~~iv~~~ltaS~ 772 (793)
++. ++++ +.+|.+ ++....|+.-. .+... . .....+.++.|.+. ..++ .++.
T Consensus 260 ~~~-~~~~-g~~g~i--~~S~DgG~tW~--~~~~~-------------~---~~~~~~~~v~~~~~--~~~~----~~G~ 311 (327)
T 2xbg_A 260 PNE-VWLA-GGAGAL--LCSQDGGQTWQ--QDVDV-------------K---KVPSNFYKILFFSP--DQGF----ILGQ 311 (327)
T ss_dssp SSC-EEEE-ESTTCE--EEESSTTSSCE--ECGGG-------------T---TSSSCCCEEEEEET--TEEE----EECS
T ss_pred CCE-EEEE-eCCCeE--EEeCCCCcccE--EcCcc-------------C---CCCCCeEEEEEECC--CceE----EEcC
Confidence 776 5454 456766 23333343222 11110 0 01123556667543 2334 7788
Q ss_pred CCcEEEEcC
Q 003822 773 DHCDKECSH 781 (793)
Q Consensus 773 Dg~VkvW~~ 781 (793)
+|.|.-++.
T Consensus 312 ~G~i~~~~~ 320 (327)
T 2xbg_A 312 KGILLRYVT 320 (327)
T ss_dssp TTEEEEECC
T ss_pred CceEEEEcC
Confidence 898766654
No 298
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.25 E-value=0.035 Score=60.08 Aligned_cols=244 Identities=9% Similarity=0.073 Sum_probs=126.6
Q ss_pred eEEEEEeCCCCC-EEEEEeCCCeEEEEECCCCeEEEEEe-----ccCCCCCEEEEEEeeC---CCCEEEEEEc-------
Q 003822 456 PRQFEYHPSISC-LMVFGTLDGEIVVVNHENENIVSYIP-----SFGAMNSVLGLCWLKK---YPSKLIAGSD------- 519 (793)
Q Consensus 456 V~~vafsP~d~~-~Lasgs~DG~I~VWd~~t~~~i~~l~-----~~~h~~~V~sv~fs~~---~g~~Lasgs~------- 519 (793)
++.|+|.| +++ +++ +...|.|++++.. +.....+. ..........++++|. ++.+.++-+.
T Consensus 20 P~~i~~~p-dG~~l~V-~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~ 96 (353)
T 2g8s_A 20 PWALAFLP-DNHGMLI-TLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA 96 (353)
T ss_dssp EEEEEECS-TTCCEEE-EETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred cEEEEEcC-CCCEEEE-EeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence 89999999 887 554 5567999999853 43221111 0112346789999732 3444444332
Q ss_pred CCcEEEEEcCCCCCcccccccCCceeE-e----cCCCCeEEEEEccCCCEEEEEECC-------------CcEEEEECCC
Q 003822 520 NGSLKLYDIRHMPPSIRGMHYGAGTVT-F----DEFDQLTSVHVNSMDELFLASGYS-------------KNIALYDINS 581 (793)
Q Consensus 520 DgtV~vWDl~~~~~~~~~~~~~~~~~~-~----~~~~~V~sv~~s~~~~~lla~g~D-------------g~I~IWDl~t 581 (793)
...|..|+.......+.... ..+. . ........+.|.|++..+++.+.. |.|.-+|...
T Consensus 97 ~~~v~r~~~~~~~~~~~~~~---~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG 173 (353)
T 2g8s_A 97 GTAVGYGRLSDDLSKVTDFR---TVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQG 173 (353)
T ss_dssp EEEEEEEEECTTSSBEEEEE---EEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTS
T ss_pred eeEEEEEEECCCCCCCCceE---EEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCC
Confidence 23566666654321111000 0000 0 011224578998877555555432 4576677653
Q ss_pred Cc------------EEEEEcccCCCCeEEEEEcC-CCCcEEEEEeC-CCeEEEEECCCC---------------------
Q 003822 582 GR------------RLQVFADMHKEHINVVKFSN-HSPSIFATSSF-DQDVKLWDLRQK--------------------- 626 (793)
Q Consensus 582 g~------------~l~~~~~gh~~~V~sv~fsp-dg~~~LaTgs~-Dg~IrIWDlrt~--------------------- 626 (793)
.- ....+..+| .....++|+| .+ .++++-.. ++.=.|.-+..+
T Consensus 174 ~~p~~npf~~~~~~~~~i~a~G~-rnp~gl~~d~~~g-~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~ 251 (353)
T 2g8s_A 174 EIPDDNPFIKESGVRAEIWSYGI-RNPQGMAMNPWSN-ALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPE 251 (353)
T ss_dssp CCCTTCTTTTSTTSCTTEEEECC-SEEEEEEEETTTT-EEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTT
T ss_pred CCCCCCCCcCCCCCCccEEEEcC-cCccceEEECCCC-CEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCc
Confidence 20 111222234 3467899999 55 55554332 211122211111
Q ss_pred --------CccceEEccCCCCeEEEEEec-------CCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEe
Q 003822 627 --------PIQPCYTASSSKGNVMVCFSP-------DDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYY 691 (793)
Q Consensus 627 --------~~~~~~~l~~~~~~vsv~fSp-------dg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afs 691 (793)
...+......+..+..+.|.. +|.++++.-..+.|...++..++..............+..+++.
T Consensus 252 ~~~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~ 331 (353)
T 2g8s_A 252 AKGEIVAGTEQPVFYWKDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTG 331 (353)
T ss_dssp CCBSSCTTSCCCSEEESSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEEC
T ss_pred ccCCCCCCccCCeEEeCCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEEC
Confidence 012333444444555577764 46777766677888888887665443332222223468889999
Q ss_pred eCCCeEEEEEeCCCcE
Q 003822 692 LNGRDYIVSGSCDEHV 707 (793)
Q Consensus 692 pdg~~~L~Sgs~Dg~I 707 (793)
|||..|+++-..+|.|
T Consensus 332 pdG~lyv~td~~~g~I 347 (353)
T 2g8s_A 332 PDGYLYVLTDESSGEL 347 (353)
T ss_dssp TTSCEEEEECSTTEEE
T ss_pred CCCcEEEEEeCCCCEE
Confidence 9998444443344544
No 299
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=97.14 E-value=0.00013 Score=70.06 Aligned_cols=108 Identities=19% Similarity=0.230 Sum_probs=67.6
Q ss_pred cceeEEeccCCchhhHHHHHhhcCCceeeEeecccccccccccccccceeeEEeeccccccccccccccccccccceecc
Q 003822 100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSM 179 (793)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (793)
.+|+.++|+++.+...-+...+..=-+-+.|+|+.+++..+...+.+.+|.+|+|.++ .++......|..||+|+.|++
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSEN-RIFGGLDMLAEKLPNLTHLNL 102 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESC-CCCSCCCHHHHHCTTCCEEEC
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCC-cCchHHHHHHhhCCCCCEEec
Confidence 5677777777665421122221111234677777777777766777777777777744 466655566667777777777
Q ss_pred ccccchhhhHHHHHHhcCCcccceecceee
Q 003822 180 CETRVGNLWTTIAALSKLPSLAELRFQNWL 209 (793)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (793)
...++..+- ...++.+||+|++|.+..|.
T Consensus 103 s~N~l~~~~-~~~~l~~l~~L~~L~l~~N~ 131 (168)
T 2ell_A 103 SGNKLKDIS-TLEPLKKLECLKSLDLFNCE 131 (168)
T ss_dssp BSSSCCSSG-GGGGGSSCSCCCEEECCSSG
T ss_pred cCCccCcch-hHHHHhcCCCCCEEEeeCCc
Confidence 777766542 12566777777777776653
No 300
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.14 E-value=0.085 Score=56.37 Aligned_cols=212 Identities=12% Similarity=0.093 Sum_probs=122.1
Q ss_pred ceEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccC----CC--CCEEEEEEe--eCCCCEEEEEEc-------
Q 003822 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFG----AM--NSVLGLCWL--KKYPSKLIAGSD------- 519 (793)
Q Consensus 455 ~V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~----h~--~~V~sv~fs--~~~g~~Lasgs~------- 519 (793)
++-+++|++.++.++++.-..|+|..|+...+..... ...+ .. ..+..|.|. .+++.++++...
T Consensus 14 yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~ 92 (334)
T 2p9w_A 14 TPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFA 92 (334)
T ss_dssp CCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTT
T ss_pred CCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccc
Confidence 4778999995555555555899999999986654433 2222 11 135788883 245666665432
Q ss_pred ------CCcEEEEEcC---CCCCcccc-cccCCce---eEecCCCCeEEEEEccCCCEEEEEECC-CcEEEEECCCCcEE
Q 003822 520 ------NGSLKLYDIR---HMPPSIRG-MHYGAGT---VTFDEFDQLTSVHVNSMDELFLASGYS-KNIALYDINSGRRL 585 (793)
Q Consensus 520 ------DgtV~vWDl~---~~~~~~~~-~~~~~~~---~~~~~~~~V~sv~~s~~~~~lla~g~D-g~I~IWDl~tg~~l 585 (793)
+..|..+|+. +++..... +...... ..-........+++.+.++.+++.+.. +.|..++.... .+
T Consensus 93 g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~-~~ 171 (334)
T 2p9w_A 93 DQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGK-TV 171 (334)
T ss_dssp SCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSC-CE
T ss_pred ccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCC-EE
Confidence 6789999998 65542211 1100000 000011237889998999999988877 88877777633 33
Q ss_pred EEEc--c---cCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEECCCCCccceEEcc--CC----CCeEEE-EEecCCCEEE
Q 003822 586 QVFA--D---MHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTAS--SS----KGNVMV-CFSPDDHYLL 653 (793)
Q Consensus 586 ~~~~--~---gh~~~V~sv~fspdg~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~--~~----~~~vsv-~fSpdg~~La 653 (793)
..+. . ......+.|+++|+| ++|++....|.+..+|+++.... ..... +. ...-.+ .--.+|+.++
T Consensus 172 ~~~~~~~~~~~~~~G~nGIv~~pdg-~~Liv~~~~g~L~~fD~~~pv~~-~v~~~~~G~~~~~~~~dgilp~~~~G~vll 249 (334)
T 2p9w_A 172 STFAWESGNGGQRPGYSGITFDPHS-NKLIAFGGPRALTAFDVSKPYAW-PEPVKINGDFGTLSGTEKIVTVPVGNESVL 249 (334)
T ss_dssp EEEEECCCCSSSCCSCSEEEEETTT-TEEEEESSSSSEEEEECSSSSCC-CEECEESSCCCCCTTEEEEEEEEETTEEEE
T ss_pred eeeeecCCCcccccCcceEEEeCCC-CEEEEEcCCCeEEEEcCCCCcce-eecccccCCcccccCcccccccccCCEEEE
Confidence 3221 1 112246799999999 66666655999999999853221 12221 11 112223 3334788755
Q ss_pred EEe-CCCeEEEEEcCCCc
Q 003822 654 VSA-VDNEVRQLLAVDGR 670 (793)
Q Consensus 654 sgs-~Dg~I~IwDl~tg~ 670 (793)
++. ..+.+.+.+....+
T Consensus 250 V~~~~~~~~~l~S~DgW~ 267 (334)
T 2p9w_A 250 VGARAPYAISFRSWDNWK 267 (334)
T ss_dssp EEEETTEEEEEECSSTTS
T ss_pred EEcCCCCEEEEECCCCcc
Confidence 544 45555555544433
No 301
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=97.12 E-value=0.00016 Score=67.99 Aligned_cols=107 Identities=20% Similarity=0.239 Sum_probs=68.8
Q ss_pred cceeEEeccCCchhhHHHHHhhcCCceeeEeecccccccccccccccceeeEEeeccccccccccccccccccccceecc
Q 003822 100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSM 179 (793)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (793)
.+|+.++|.++.+....+...+..=-.-+.|+|+.+.+..+...+.+.+|.+|+|.+ +.|++.-...|..||+|..|++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~-n~i~~~~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSD-NRVSGGLEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCS-SCCCSCTHHHHHHCTTCCEEEC
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCC-CcccchHHHHhhhCCCCCEEEC
Confidence 567777777766652222222222234577777777777777777777788888874 4566644456666788888877
Q ss_pred ccccchhhhHHHHHHhcCCcccceeccee
Q 003822 180 CETRVGNLWTTIAALSKLPSLAELRFQNW 208 (793)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (793)
-..++..+. ...++..+|+|++|.+..|
T Consensus 96 s~N~i~~~~-~~~~~~~l~~L~~L~l~~N 123 (149)
T 2je0_A 96 SGNKIKDLS-TIEPLKKLENLKSLDLFNC 123 (149)
T ss_dssp TTSCCCSHH-HHGGGGGCTTCCEEECTTC
T ss_pred CCCcCCChH-HHHHHhhCCCCCEEeCcCC
Confidence 777766543 2245777778888777765
No 302
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.11 E-value=0.0013 Score=78.22 Aligned_cols=228 Identities=8% Similarity=0.021 Sum_probs=131.6
Q ss_pred CCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEE-EcCCcEEEEEcCCCC---CcccccccCCceeEecCC
Q 003822 475 DGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAG-SDNGSLKLYDIRHMP---PSIRGMHYGAGTVTFDEF 550 (793)
Q Consensus 475 DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasg-s~DgtV~vWDl~~~~---~~~~~~~~~~~~~~~~~~ 550 (793)
.+.|++.++.+.+....+. ....+.+++|. +.+..|+.+ ...+.|+.+++.... ...... ....
T Consensus 385 ~~~I~~id~~~~~~~~~~~---~~~~p~gla~d-~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i--------~~~~ 452 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSLIP---NLRNVVALDTE-VASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI--------SRDI 452 (699)
T ss_dssp TTC-CEECTTSCCEECCSC---CCTTCCCCEEE-TTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBC--------CSCC
T ss_pred ccceEEEeCCCCcceeeec---cCcceEEEccc-cccCeEEEEecCCCeEEEEecCCCCCCcceEEEE--------eCCC
Confidence 4678888888766554433 22456788887 444455444 456789999987511 100000 0011
Q ss_pred CCeEEEEEccCCCEEEEEE-CCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeCC-CeEEEEECCCCCc
Q 003822 551 DQLTSVHVNSMDELFLASG-YSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFD-QDVKLWDLRQKPI 628 (793)
Q Consensus 551 ~~V~sv~~s~~~~~lla~g-~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~D-g~IrIWDlrt~~~ 628 (793)
..+..|++.+.++.++.+. ..+.|.++++........+. ........+++.|.++.++++-... +.|.++++.....
T Consensus 453 ~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~-~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~ 531 (699)
T 1n7d_A 453 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR-EQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI 531 (699)
T ss_dssp --CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECC-CSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCC
T ss_pred CCcceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEe-CCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCe
Confidence 2345677765666666554 56889999987554433333 2334567899999764566554333 6788888765322
Q ss_pred cceEEccCCCCeEEEEEecCCCEEEEEe-CCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCCCeEEEEEeCCCcE
Q 003822 629 QPCYTASSSKGNVMVCFSPDDHYLLVSA-VDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNGRDYIVSGSCDEHV 707 (793)
Q Consensus 629 ~~~~~l~~~~~~vsv~fSpdg~~Lasgs-~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg~I 707 (793)
. ++....-..+..++|+|++..|+.+. ..+.|.++++..... ..+............+++.. ..++++....+.|
T Consensus 532 ~-~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~-~~~~~~~~~~~~P~glavd~--~~lywtd~~~~~V 607 (699)
T 1n7d_A 532 Y-SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVFE--DKVFWTDIINEAI 607 (699)
T ss_dssp C-EESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCC-EEECCCSSSCSSCCCCEEET--TEEEEECSTTTCE
T ss_pred e-EEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCce-EEEEecCCcCCCceEeEEEC--CEEEEEeCCCCeE
Confidence 2 22111222344599999866665554 567899999864332 33321111112334455543 3366666666788
Q ss_pred EEEEEcCCCcEEE
Q 003822 708 VRICCAQTGRRLR 720 (793)
Q Consensus 708 I~IWDv~tg~~l~ 720 (793)
..++..+|+.+.
T Consensus 608 -~~~d~~~G~~~~ 619 (699)
T 1n7d_A 608 -FSANRLTGSDVN 619 (699)
T ss_dssp -EEEETTTEEEEE
T ss_pred -EEEEccCCCceE
Confidence 999998998887
No 303
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.03 E-value=0.00053 Score=81.68 Aligned_cols=207 Identities=8% Similarity=0.007 Sum_probs=120.3
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCC----CeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCC
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHEN----ENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHM 531 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t----~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~ 531 (793)
+..++|++.++.++++-...+.|+.+++.+ ......+. ........|++.+..++++++-...+.|.++++...
T Consensus 408 p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~--~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~ 485 (699)
T 1n7d_A 408 VVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS--RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 485 (699)
T ss_dssp CCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCC--SCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred eEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEe--CCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence 667899994444455555678899999875 22211111 111223455654234555555556778999888754
Q ss_pred CCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEEC--CCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEE
Q 003822 532 PPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY--SKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIF 609 (793)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~--Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~L 609 (793)
...... .........+++.|.++.++.+.. .+.|.++++... ....+....-...+.|+|+|+++.++
T Consensus 486 ~~~~l~---------~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~-~~~~l~~~~l~~PnGlavd~~~~~LY 555 (699)
T 1n7d_A 486 KRKTLF---------REQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLVTENIQWPNGITLDLLSGRLY 555 (699)
T ss_dssp CEEEEC---------CCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSC-CCCEESCSSCSSCCCEEECTTTCCEE
T ss_pred ceEEEE---------eCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCC-CeeEEEeCCCCCccEEEEeccCCEEE
Confidence 321110 011234567888887777666653 377888877633 22223212234567899999876777
Q ss_pred EEEeCCCeEEEEECCCCCccceEEccC-CCCeEEEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEE
Q 003822 610 ATSSFDQDVKLWDLRQKPIQPCYTASS-SKGNVMVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNF 675 (793)
Q Consensus 610 aTgs~Dg~IrIWDlrt~~~~~~~~l~~-~~~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l 675 (793)
++-+..+.|..+|+.......+..... ...+..+++..+ ..+++....+.|..++..+|+.+..+
T Consensus 556 ~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i 621 (699)
T 1n7d_A 556 WVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLL 621 (699)
T ss_dssp EEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECC
T ss_pred EEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEe
Confidence 777778899999997643332222111 122334555543 33344445688999998888876655
No 304
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.03 E-value=0.19 Score=56.82 Aligned_cols=264 Identities=12% Similarity=0.039 Sum_probs=143.2
Q ss_pred CEEEEEEeeCC-CCEEEEEEcCCcEEEEEcCCCCCcccccccCCceeEecCCCCeEEEEE-------ccCCCEEEEEECC
Q 003822 500 SVLGLCWLKKY-PSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHV-------NSMDELFLASGYS 571 (793)
Q Consensus 500 ~V~sv~fs~~~-g~~Lasgs~DgtV~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~-------s~~~~~lla~g~D 571 (793)
....|+|.|.+ ++++++-...+.|++.|.+++........+ . ........++| ++++..++++...
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~-~-----~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~ 213 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNIN-T-----IPTNRIRSIAFNKKIEGYADEAEYMIVAIDY 213 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCT-T-----SSCSBEEEEEECCCBTTTBCTTCEEEEEECC
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccC-c-----cccCCCcEEEEeecccccCCCCCEEEEEeCC
Confidence 45678887423 444444444467888888775432111000 0 01245789999 9998877777654
Q ss_pred C-------cEEEEECCC-CcEE-----EEEcccCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEECC-------CCCc---
Q 003822 572 K-------NIALYDINS-GRRL-----QVFADMHKEHINVVKFSNHSPSIFATSSFDQDVKLWDLR-------QKPI--- 628 (793)
Q Consensus 572 g-------~I~IWDl~t-g~~l-----~~~~~gh~~~V~sv~fspdg~~~LaTgs~Dg~IrIWDlr-------t~~~--- 628 (793)
+ .|.+++... +... ..+.. . .....++.+|+++.++++-..++.|..+|+. ++..
T Consensus 214 ~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~-~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp 291 (496)
T 3kya_A 214 DGKGDESPSVYIIKRNADGTFDDRSDIQLIAA-Y-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDP 291 (496)
T ss_dssp CTTGGGEEEEEEEECCTTSCCSTTSCEEEEEE-E-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCC
T ss_pred CCCcccCceEEEEecCCCCceeecccceeecc-C-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecc
Confidence 3 266776443 2211 22221 1 2345788999665778888888999999987 4432
Q ss_pred ---------cceEEccCCCCeEEEEEecCCCEEEEEe-CCCeEEEEEc--CCCcE--EEEEeeecC--CC----------
Q 003822 629 ---------QPCYTASSSKGNVMVCFSPDDHYLLVSA-VDNEVRQLLA--VDGRV--HLNFGITAT--GS---------- 682 (793)
Q Consensus 629 ---------~~~~~l~~~~~~vsv~fSpdg~~Lasgs-~Dg~I~IwDl--~tg~~--~~~l~~~~~--~~---------- 682 (793)
..++.......+..++|+|+|++|+.+. ..+.|+.++. .++.. ...+..... +.
T Consensus 292 ~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f 371 (496)
T 3kya_A 292 IVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARM 371 (496)
T ss_dssp BGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBC
T ss_pred cccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCccccccc
Confidence 1234444434456799999999766654 5678888654 33332 123332210 00
Q ss_pred CCcE-EEEEe-------eCCCeEEEEEeCCCcEEEEEEcCCCcEEEeeeecCCCCCc------c-ceeeeccC-CccccC
Q 003822 683 SQNY-TRSYY-------LNGRDYIVSGSCDEHVVRICCAQTGRRLRDISLEGKGSGT------S-MFVQSLRG-DPFRDF 746 (793)
Q Consensus 683 ~~v~-s~afs-------pdg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L~gh~~~~------s-~~v~sl~g-~~~~~h 746 (793)
.... .++.. ++|. ++++=....+| +.++ .+| .+. ++.|..... . -+. .| ......
T Consensus 372 ~~P~~gv~vd~~~~~~~~~g~-lyVaD~~N~rI-r~i~-~~G-~v~--TiaG~g~~~~~~~~~~~G~~---dG~~~~~a~ 442 (496)
T 3kya_A 372 NNPCQGVFVKNPDYTGEEEYD-FYFVDRLNFCV-RKVT-PEG-IVS--TYAGRGASTSLADGNQWGTD---DGDLREVAR 442 (496)
T ss_dssp SSEEEEEEEECTTCCSSCCEE-EEEEEGGGTEE-EEEC-TTC-BEE--EEEESCTTHHHHHSCSCCCC---CEETTTTCC
T ss_pred CCCeEEEEEccccccccCCCe-EEEEECCCCEE-EEEe-CCC-CEE--EEecccccccccCccccccC---CCCchhhhh
Confidence 1233 23333 3343 55555566677 8888 566 444 666543110 0 000 01 000011
Q ss_pred CccEEEEEEcCCCCceeeEeeEEE-eCCCcEEEEcCCCCC
Q 003822 747 NMSILAAYTRPSSKSEIVKVNLLA-STDHCDKECSHGQHS 785 (793)
Q Consensus 747 ~~~V~sva~~P~~~~~iv~~~lta-S~Dg~VkvW~~~~~~ 785 (793)
=....++++.++.. .|. ++ +..+.||.++.+...
T Consensus 443 f~~P~gIavd~~~g-~ly----VaD~~N~rIrki~~~~~~ 477 (496)
T 3kya_A 443 FRDVSGLVYDDVKE-MFY----VHDQVGHTIRTISMEQEE 477 (496)
T ss_dssp CSSEEEEEEETTTT-EEE----EEETTTTEEEEEEECCCC
T ss_pred cCCCcEEEEECCCC-EEE----EEeCCCCEEEEEECCCCc
Confidence 12467899998422 222 44 556788888876544
No 305
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=96.98 E-value=0.09 Score=54.66 Aligned_cols=233 Identities=12% Similarity=0.098 Sum_probs=119.4
Q ss_pred CCCEEEEEe-CC-----CeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcC-----CcEEEEEcCCCCC
Q 003822 465 ISCLMVFGT-LD-----GEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDN-----GSLKLYDIRHMPP 533 (793)
Q Consensus 465 d~~~Lasgs-~D-----G~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~D-----gtV~vWDl~~~~~ 533 (793)
++.+++.|+ .+ ..+.+||+.+++....-........ .+++. .++.+++.|+.+ ..+.+||..+...
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~--~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~ 90 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRY-VASVS--LHDRIYVIGGYDGRSRLSSVECLDYTADED 90 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBS-CEEEE--ETTEEEEECCBCSSCBCCCEEEEETTCCTT
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhcc-ccEEE--ECCEEEEEcCCCCCccCceEEEEECCCCCC
Confidence 445677776 32 4688999988765432222111111 12222 356677777755 4688999887651
Q ss_pred -cccccccCCceeEecCCCCeEEEEEccCCCEEEEEECC-----CcEEEEECCCCcEEE--EEcccCCCCeEEEEEcCCC
Q 003822 534 -SIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYS-----KNIALYDINSGRRLQ--VFADMHKEHINVVKFSNHS 605 (793)
Q Consensus 534 -~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~D-----g~I~IWDl~tg~~l~--~~~~gh~~~V~sv~fspdg 605 (793)
.......... .......+.+ ++..++.+|.+ ..+.+||+.+.+-.. .+.. ....-..+.+ ++
T Consensus 91 ~~W~~~~~~p~-----~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~-~r~~~~~~~~--~~ 160 (301)
T 2vpj_A 91 GVWYSVAPMNV-----RRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQT-AREGAGLVVA--SG 160 (301)
T ss_dssp CCCEEECCCSS-----CCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSS-CCBSCEEEEE--TT
T ss_pred CeeEECCCCCC-----CccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCC-CcccceEEEE--CC
Confidence 0111111000 0011122222 45555555533 468999998765433 2221 1111122223 45
Q ss_pred CcEEEEEeCC-----CeEEEEECCCCCccceEEccCCCCeEEEEEecCCCEEEEEeCC-----CeEEEEEcCCCcEEEEE
Q 003822 606 PSIFATSSFD-----QDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLVSAVD-----NEVRQLLAVDGRVHLNF 675 (793)
Q Consensus 606 ~~~LaTgs~D-----g~IrIWDlrt~~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs~D-----g~I~IwDl~tg~~~~~l 675 (793)
.+++.|+.+ ..+.+||+.+.....+...+......++.. -+++.++.|+.+ +.+.+||+.+.+... +
T Consensus 161 -~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~-~ 237 (301)
T 2vpj_A 161 -VIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVAL-LNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTT-V 237 (301)
T ss_dssp -EEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTEEEE-E
T ss_pred -EEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEE-ECCEEEEEeCCCCCcccceEEEEeCCCCcEEE-C
Confidence 678887765 458999998865443322222211112222 256777777653 468999998876533 2
Q ss_pred eeecCCCCCcEEEEEeeCCCeEEEEEeCCC-----cEEEEEEcCCCc
Q 003822 676 GITATGSSQNYTRSYYLNGRDYIVSGSCDE-----HVVRICCAQTGR 717 (793)
Q Consensus 676 ~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg-----~II~IWDv~tg~ 717 (793)
...+..... ..+...++. +++.|+.++ .+ .+||..+.+
T Consensus 238 ~~~p~~r~~--~~~~~~~~~-i~v~GG~~~~~~~~~v-~~yd~~~~~ 280 (301)
T 2vpj_A 238 TSMTTPRCY--VGATVLRGR-LYAIAGYDGNSLLSSI-ECYDPIIDS 280 (301)
T ss_dssp CCCSSCCBS--CEEEEETTE-EEEECCBCSSSBEEEE-EEEETTTTE
T ss_pred CCCCCcccc--eeEEEECCE-EEEEcCcCCCcccccE-EEEcCCCCe
Confidence 211111111 122333665 666666553 45 788887754
No 306
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=96.98 E-value=0.15 Score=54.12 Aligned_cols=235 Identities=8% Similarity=-0.001 Sum_probs=120.9
Q ss_pred ceEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEecc-CCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCC
Q 003822 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSF-GAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPP 533 (793)
Q Consensus 455 ~V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~-~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~ 533 (793)
.+.+|.|+| +..++ ++..|.|.. ..+.|+--..+... .+.+.+..+.+. .++..++ ++.+|.| |....+-.
T Consensus 81 ~~~~i~~~~--~~~~~-~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~-~~~~~~~-~~~~g~v--~~S~DgG~ 152 (327)
T 2xbg_A 81 RFNSVSFQG--NEGWI-VGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKAL-GNGSAEM-ITNVGAI--YRTKDSGK 152 (327)
T ss_dssp EEEEEEEET--TEEEE-EEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEE-ETTEEEE-EETTCCE--EEESSTTS
T ss_pred cEEEEEecC--CeEEE-EECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEE-CCCCEEE-EeCCccE--EEEcCCCC
Confidence 378889987 33444 445665443 33334322222211 234567788875 3444444 4456643 33333222
Q ss_pred cccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEe
Q 003822 534 SIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSS 613 (793)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs 613 (793)
...... ......+..+.+.+++. +++++.+|.+..-+-..+..-..+..+....+..+.+.+++ .++ .++
T Consensus 153 tW~~~~-------~~~~~~~~~~~~~~~~~-~~~~g~~G~~~~S~d~gG~tW~~~~~~~~~~~~~~~~~~~g-~~~-~~~ 222 (327)
T 2xbg_A 153 NWQALV-------QEAIGVMRNLNRSPSGE-YVAVSSRGSFYSTWEPGQTAWEPHNRTTSRRLHNMGFTPDG-RLW-MIV 222 (327)
T ss_dssp SEEEEE-------CSCCCCEEEEEECTTSC-EEEEETTSSEEEEECTTCSSCEEEECCSSSCEEEEEECTTS-CEE-EEE
T ss_pred CCEEee-------cCCCcceEEEEEcCCCc-EEEEECCCcEEEEeCCCCCceeECCCCCCCccceeEECCCC-CEE-EEe
Confidence 222111 11224578888877654 55566666655433111222122222356788999999887 544 455
Q ss_pred CCCeEEEEECCCCCc-cceEE--ccCCCCeEEEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCCcEEEEE
Q 003822 614 FDQDVKLWDLRQKPI-QPCYT--ASSSKGNVMVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQNYTRSY 690 (793)
Q Consensus 614 ~Dg~IrIWDlrt~~~-~~~~~--l~~~~~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~v~s~af 690 (793)
.+|.+++.+...+.. ..+.. +........+.+.|++..++++. ++.+ .+....|+.-..+............+.|
T Consensus 223 ~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~ 300 (327)
T 2xbg_A 223 NGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILF 300 (327)
T ss_dssp TTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTTSSCEECGGGTTSSSCCCEEEE
T ss_pred CCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCCcccEEcCccCCCCCCeEEEEE
Confidence 678887774221210 11100 11223455688998888766655 6766 3454555443333211112345677888
Q ss_pred eeCCCeEEEEEeCCCcEEEEEE
Q 003822 691 YLNGRDYIVSGSCDEHVVRICC 712 (793)
Q Consensus 691 spdg~~~L~Sgs~Dg~II~IWD 712 (793)
.+++ .+++++.+|.+ .-++
T Consensus 301 ~~~~--~~~~~G~~G~i-~~~~ 319 (327)
T 2xbg_A 301 FSPD--QGFILGQKGIL-LRYV 319 (327)
T ss_dssp EETT--EEEEECSTTEE-EEEC
T ss_pred ECCC--ceEEEcCCceE-EEEc
Confidence 7655 46677788877 4443
No 307
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=96.89 E-value=0.16 Score=54.67 Aligned_cols=203 Identities=14% Similarity=0.159 Sum_probs=123.2
Q ss_pred CCEEEEEEcCCcEEEEEcCCCCCcccccccCCceeEecCCCCeEEEEEccC----CCE--EEEEE--C--CCcEEEEECC
Q 003822 511 PSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSM----DEL--FLASG--Y--SKNIALYDIN 580 (793)
Q Consensus 511 g~~Lasgs~DgtV~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~----~~~--lla~g--~--Dg~I~IWDl~ 580 (793)
..+++.....+-+.+||+ +++.... + ..+.++.+.+-|. +.. +++++ . +++|.+|++.
T Consensus 40 ~s~ii~t~k~~gL~Vydl-~G~~l~~-~----------~~g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iD 107 (355)
T 3amr_A 40 NSKLITTNKKSGLVVYSL-DGKMLHS-Y----------NTGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAID 107 (355)
T ss_dssp GCEEEEEETTTEEEEEET-TSCEEEE-E----------CCSCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEEC
T ss_pred ccEEEEEcCCCCEEEEcC-CCcEEEE-c----------cCCCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEEC
Confidence 356777777889999999 4443111 1 1134556555441 211 33444 3 5789999774
Q ss_pred -CCcEEEEEccc-----CC-CCeEEEEE--cCCCC-cEEEEEeCCCeEEEEECCC---C--CccceEEccCCCCeEEEEE
Q 003822 581 -SGRRLQVFADM-----HK-EHINVVKF--SNHSP-SIFATSSFDQDVKLWDLRQ---K--PIQPCYTASSSKGNVMVCF 645 (793)
Q Consensus 581 -tg~~l~~~~~g-----h~-~~V~sv~f--spdg~-~~LaTgs~Dg~IrIWDlrt---~--~~~~~~~l~~~~~~vsv~f 645 (793)
....+..+... .. ..+..+++ +|.++ .++++...+|.+..|++.. + ....+.++.....+-.+..
T Consensus 108 p~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~Egcvv 187 (355)
T 3amr_A 108 GKNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAA 187 (355)
T ss_dssp TTTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEE
T ss_pred CCCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEE
Confidence 22235555210 11 56677887 77543 3677888899999999843 2 1233444444445556889
Q ss_pred ecCCCEEEEEeCCCeEEEEEcC-----CCcEEEEEeeecCCCCCcEEEEE--eeCCCeEEEEEe-CCCcEEEEEEcC-CC
Q 003822 646 SPDDHYLLVSAVDNEVRQLLAV-----DGRVHLNFGITATGSSQNYTRSY--YLNGRDYIVSGS-CDEHVVRICCAQ-TG 716 (793)
Q Consensus 646 Spdg~~Lasgs~Dg~I~IwDl~-----tg~~~~~l~~~~~~~~~v~s~af--spdg~~~L~Sgs-~Dg~II~IWDv~-tg 716 (793)
.+....|+++-.+.-|..++.. +++.+..+.. ..-...+-.++. .++++.||++++ .+.+. .+||.. +.
T Consensus 188 Dd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~-g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~-~Vydr~~~~ 265 (355)
T 3amr_A 188 DDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADG-RHLTRDIEGLTIYYAADGKGYLMASSQGNSSY-AIYDRQGKN 265 (355)
T ss_dssp ETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSS-SSBCSCEEEEEEEECGGGCEEEEEEEGGGTEE-EEEESSTTC
T ss_pred cCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecC-CccccCcceEEEEecCCCCEEEEEEcCCCCEE-EEEECCCCC
Confidence 9999999999998777777755 3445443321 111234566666 455554666666 55677 999997 78
Q ss_pred cEEEeeeecCC
Q 003822 717 RRLRDISLEGK 727 (793)
Q Consensus 717 ~~l~~~~L~gh 727 (793)
+.+..+.+..+
T Consensus 266 ~~vg~f~Ig~~ 276 (355)
T 3amr_A 266 KYVADFRITDG 276 (355)
T ss_dssp CEEEEEEECCC
T ss_pred cEEEEEEecCC
Confidence 88886655554
No 308
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=96.83 E-value=0.00077 Score=64.49 Aligned_cols=105 Identities=18% Similarity=0.178 Sum_probs=81.4
Q ss_pred cceeEEeccCCchhhHHHHHhhcCCceeeEeecccccccc-cc-cccccceeeEEeeccccccccccc-cccccccccce
Q 003822 100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRK-LN-MIGEFKRIHTLNLDYSTSLTSFKE-DCFSCMPNLIC 176 (793)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 176 (793)
.+|+..+|.++.+..- .-+..--.-+.|+|+.+++.. +. +.+.+.+|.+|+|.++ .|+.++. ..|..||+|..
T Consensus 49 ~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~l~~l~~L~~ 124 (168)
T 2ell_A 49 VNLEFLSLINVGLISV---SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGN-KLKDISTLEPLKKLECLKS 124 (168)
T ss_dssp GGCCEEEEESSCCCCC---SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSS-SCCSSGGGGGGSSCSCCCE
T ss_pred CCCCEEeCcCCCCCCh---hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCC-ccCcchhHHHHhcCCCCCE
Confidence 5799999999877653 222222346899999999987 33 3445889999999976 8999875 78999999999
Q ss_pred eccccccchhhhH-HHHHHhcCCcccceeccee
Q 003822 177 LSMCETRVGNLWT-TIAALSKLPSLAELRFQNW 208 (793)
Q Consensus 177 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 208 (793)
|++-+..+..+-. ...++.+||+|++|....|
T Consensus 125 L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n 157 (168)
T 2ell_A 125 LDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDR 157 (168)
T ss_dssp EECCSSGGGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred EEeeCCcCcchHHHHHHHHHhCccCcEecCCCC
Confidence 9999988876643 2257899999999988765
No 309
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=96.81 E-value=0.00096 Score=65.82 Aligned_cols=101 Identities=15% Similarity=0.173 Sum_probs=68.0
Q ss_pred ceeEEeccCCchhh-HHHHHhhcCCceeeEeecccccccccccccccceeeEEeeccccccccccccccccccccceecc
Q 003822 101 KLRVVDLHDSSFGK-DFIRNLSQRGLMCEVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSM 179 (793)
Q Consensus 101 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (793)
+|+.++|+++.+.. ..+..+. +-+.|+|+.+.+..+...+.+++|.+|+|.+ ..++......|+.||+|+.|.+
T Consensus 45 ~L~~L~l~~n~i~~l~~l~~l~----~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~-n~l~~~~~~~l~~l~~L~~L~L 119 (197)
T 4ezg_A 45 SLTYITLANINVTDLTGIEYAH----NIKDLTINNIHATNYNPISGLSNLERLRIMG-KDVTSDKIPNLSGLTSLTLLDI 119 (197)
T ss_dssp TCCEEEEESSCCSCCTTGGGCT----TCSEEEEESCCCSCCGGGTTCTTCCEEEEEC-TTCBGGGSCCCTTCTTCCEEEC
T ss_pred CccEEeccCCCccChHHHhcCC----CCCEEEccCCCCCcchhhhcCCCCCEEEeEC-CccCcccChhhcCCCCCCEEEe
Confidence 45666666654441 1122221 3467777777777777777788888888885 5677655666888888888888
Q ss_pred ccccchhhhHHHHHHhcCCcccceeccee
Q 003822 180 CETRVGNLWTTIAALSKLPSLAELRFQNW 208 (793)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (793)
..+++... ...+++++++|++|.+..|
T Consensus 120 s~n~i~~~--~~~~l~~l~~L~~L~L~~n 146 (197)
T 4ezg_A 120 SHSAHDDS--ILTKINTLPKVNSIDLSYN 146 (197)
T ss_dssp CSSBCBGG--GHHHHTTCSSCCEEECCSC
T ss_pred cCCccCcH--hHHHHhhCCCCCEEEccCC
Confidence 88777652 2466778888888887765
No 310
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=96.79 E-value=0.14 Score=53.20 Aligned_cols=231 Identities=13% Similarity=0.133 Sum_probs=117.3
Q ss_pred CCEEEEEeCC----CeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcC-----CcEEEEEcCCCCCccc
Q 003822 466 SCLMVFGTLD----GEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDN-----GSLKLYDIRHMPPSIR 536 (793)
Q Consensus 466 ~~~Lasgs~D----G~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~D-----gtV~vWDl~~~~~~~~ 536 (793)
+.+++.|+.+ ..+.+||+.+.+....-........ .+++. .++..++.|+.+ ..+.+||..+.+-.
T Consensus 16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~--~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~-- 90 (302)
T 2xn4_A 16 KLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCR-AGMVY--MAGLVFAVGGFNGSLRVRTVDSYDPVKDQWT-- 90 (302)
T ss_dssp EEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBS-CEEEE--ETTEEEEESCBCSSSBCCCEEEEETTTTEEE--
T ss_pred CEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCccccc-ceEEE--ECCEEEEEeCcCCCccccceEEECCCCCcee--
Confidence 3566666643 4588899888765433221111111 12222 256677777754 35788888765421
Q ss_pred ccccCCceeEecCCCCeEEEEEccCCCEEEEEECC-----CcEEEEECCCCcEEEEEcccCC-CCeEEEEEcCCCCcEEE
Q 003822 537 GMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYS-----KNIALYDINSGRRLQVFADMHK-EHINVVKFSNHSPSIFA 610 (793)
Q Consensus 537 ~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~D-----g~I~IWDl~tg~~l~~~~~gh~-~~V~sv~fspdg~~~La 610 (793)
....... .......+.+ .+..++.||.+ ..+.+||+.+.+-...-.-... .....+.+ ++ .+++
T Consensus 91 ~~~~~p~-----~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~-~iyv 160 (302)
T 2xn4_A 91 SVANMRD-----RRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV--GG-LLYA 160 (302)
T ss_dssp EECCCSS-----CCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TT-EEEE
T ss_pred eCCCCCc-----cccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE--CC-EEEE
Confidence 1110000 0011122222 55666677654 3588899987764432110111 11122223 44 6777
Q ss_pred EEeCC-------CeEEEEECCCCCccceEEccCCCCeEEEEEecCCCEEEEEeCC-----CeEEEEEcCCCcEEEEEeee
Q 003822 611 TSSFD-------QDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLVSAVD-----NEVRQLLAVDGRVHLNFGIT 678 (793)
Q Consensus 611 Tgs~D-------g~IrIWDlrt~~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs~D-----g~I~IwDl~tg~~~~~l~~~ 678 (793)
.|+.+ ..+.+||+.+.....+...+......+++. -+++.++.|+.+ +.+.+||..+.+... +...
T Consensus 161 ~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~-~~~~ 238 (302)
T 2xn4_A 161 VGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGV-LNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQ-VADM 238 (302)
T ss_dssp ECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCBSSSSBCCCEEEEETTTTEEEE-ECCC
T ss_pred EeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEE-ECCEEEEECCCCCCcccceEEEEeCCCCCEee-CCCC
Confidence 77653 348899998864443322222211112222 256777777654 468999998876532 2211
Q ss_pred cCCCCCcEEEEEeeCCCeEEEEEeCCC-----cEEEEEEcCCCc
Q 003822 679 ATGSSQNYTRSYYLNGRDYIVSGSCDE-----HVVRICCAQTGR 717 (793)
Q Consensus 679 ~~~~~~v~s~afspdg~~~L~Sgs~Dg-----~II~IWDv~tg~ 717 (793)
+..... ..+...++. +++.|+.++ .+ .+||..+.+
T Consensus 239 ~~~r~~--~~~~~~~~~-i~v~GG~~~~~~~~~v-~~yd~~~~~ 278 (302)
T 2xn4_A 239 NMCRRN--AGVCAVNGL-LYVVGGDDGSCNLASV-EYYNPTTDK 278 (302)
T ss_dssp SSCCBS--CEEEEETTE-EEEECCBCSSSBCCCE-EEEETTTTE
T ss_pred CCcccc--CeEEEECCE-EEEECCcCCCcccccE-EEEcCCCCe
Confidence 111111 122233565 666666553 36 888888764
No 311
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=96.78 E-value=0.099 Score=61.09 Aligned_cols=202 Identities=9% Similarity=0.049 Sum_probs=122.3
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeE-EEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCc
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENI-VSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPS 534 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~-i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~ 534 (793)
+..++|++.++.++.+-...+.|..++++.... ...+. ..-.....+++....++++++-...+.|.+.++......
T Consensus 42 ~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~--~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~ 119 (619)
T 3s94_A 42 AAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVV--SGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRK 119 (619)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEEC--SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred eEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEe--CCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEE
Confidence 789999995555555655678899999875532 22222 223467888876334555555567789999998764331
Q ss_pred ccccccCCceeEecCCCCeEEEEEccCCCEEEEEEC--CCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEE
Q 003822 535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY--SKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATS 612 (793)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~--Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTg 612 (793)
.. .........+|++.|.++.++.+.. .+.|...++.......... ..-...+.+++++++..++++-
T Consensus 120 ~l---------~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~-~~~~~P~Glald~~~~~LY~aD 189 (619)
T 3s94_A 120 VL---------FWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIIN-SEIYWPNGLTLDYEEQKLYWAD 189 (619)
T ss_dssp EE---------ECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC-SSCSSEEEEEEETTTTEEEEEE
T ss_pred EE---------EeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEe-CCCCCCcEEEEEccCCEEEEEe
Confidence 11 1122245678999898888877763 4677777776333333332 2445678999999775666666
Q ss_pred eCCCeEEEEECCCCCccceEEccCCCCeEEEEEecCCCEEEEEe-CCCeEEEEEcCCCcEE
Q 003822 613 SFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLVSA-VDNEVRQLLAVDGRVH 672 (793)
Q Consensus 613 s~Dg~IrIWDlrt~~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs-~Dg~I~IwDl~tg~~~ 672 (793)
...+.|..+|+.......+.. ..-..+..+++..+ .|+.+. ..+.|...|..+|+..
T Consensus 190 ~~~~~I~~~~~dG~~~~~~~~-~~~~~P~gi~~~~~--~ly~td~~~~~V~~~d~~tg~~~ 247 (619)
T 3s94_A 190 AKLNFIHKSNLDGTNRQAVVK-GSLPHPFALTLFED--ILYWTDWSTHSILACNKYTGEGL 247 (619)
T ss_dssp TTTCCEEEESSSCCEEC----------CCCEEESSS--EEEEECTTTCSEEEEESSSCCCC
T ss_pred CCCCeEEEecCCCCccEEEEe-CCCCCceEEEEeCC--EEEEecCCCCEEEEEECCCCccc
Confidence 667889999987643222221 11122334666554 455544 5678999998877643
No 312
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=96.75 E-value=0.00064 Score=67.10 Aligned_cols=100 Identities=20% Similarity=0.328 Sum_probs=65.6
Q ss_pred cceeEEeccCCchhhHHHHHhhcCCceeeEeecccccccc--cccccccceeeEEeecccccccccccccccccccccee
Q 003822 100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRK--LNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICL 177 (793)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (793)
.+|+.++|..+.+.......+..- -.=+.|+|+.+++.. ....+.+++|.+|+|.++..++.++ -|..||+|..|
T Consensus 88 ~~L~~L~l~~n~l~~~~~~~l~~l-~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~--~l~~l~~L~~L 164 (197)
T 4ezg_A 88 SNLERLRIMGKDVTSDKIPNLSGL-TSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM--PLKTLPELKSL 164 (197)
T ss_dssp TTCCEEEEECTTCBGGGSCCCTTC-TTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG--GGGGCSSCCEE
T ss_pred CCCCEEEeECCccCcccChhhcCC-CCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH--hhcCCCCCCEE
Confidence 567777777776654333332210 124677777777766 5556677777777777766677775 47777778777
Q ss_pred ccccccchhhhHHHHHHhcCCcccceecc
Q 003822 178 SMCETRVGNLWTTIAALSKLPSLAELRFQ 206 (793)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (793)
.+...++.++ .++.++|+|++|.+.
T Consensus 165 ~l~~n~i~~~----~~l~~l~~L~~L~l~ 189 (197)
T 4ezg_A 165 NIQFDGVHDY----RGIEDFPKLNQLYAF 189 (197)
T ss_dssp ECTTBCCCCC----TTGGGCSSCCEEEEC
T ss_pred ECCCCCCcCh----HHhccCCCCCEEEee
Confidence 7777777653 267777777777654
No 313
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=96.73 E-value=0.15 Score=53.15 Aligned_cols=231 Identities=9% Similarity=0.023 Sum_probs=117.6
Q ss_pred CCEEEEEeC--CCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcC----CcEEEEEcCCCCCcccccc
Q 003822 466 SCLMVFGTL--DGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDN----GSLKLYDIRHMPPSIRGMH 539 (793)
Q Consensus 466 ~~~Lasgs~--DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~D----gtV~vWDl~~~~~~~~~~~ 539 (793)
+.+++.|+. ...+.+||..+++....-........-..+. .++.+++.|+.+ ..+.+||..+.+-. ...
T Consensus 12 ~~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~---~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~--~~~ 86 (306)
T 3ii7_A 12 DYRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVF---WDNVVYILGGSQLFPIKRMDCYNVVKDSWY--SKL 86 (306)
T ss_dssp CEEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEE---ETTEEEEECCBSSSBCCEEEEEETTTTEEE--EEE
T ss_pred ceEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEE---ECCEEEEEeCCCCCCcceEEEEeCCCCeEE--ECC
Confidence 346667765 3579999998877553322211111222222 256677777755 56888888775421 111
Q ss_pred cCCceeEecCCCCeEEEEEccCCCEEEEEECC------CcEEEEECCCCcEEEEEcccCC-CCeEEEEEcCCCCcEEEEE
Q 003822 540 YGAGTVTFDEFDQLTSVHVNSMDELFLASGYS------KNIALYDINSGRRLQVFADMHK-EHINVVKFSNHSPSIFATS 612 (793)
Q Consensus 540 ~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~D------g~I~IWDl~tg~~l~~~~~gh~-~~V~sv~fspdg~~~LaTg 612 (793)
.... .......+.+ .+..++.||.+ ..+.+||..+.+-...-.-... ..-..+.+ ++ .+++.|
T Consensus 87 ~~p~-----~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~-~iyv~G 156 (306)
T 3ii7_A 87 GPPT-----PRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA--NG-LIYVCG 156 (306)
T ss_dssp CCSS-----CCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TT-EEEEEC
T ss_pred CCCc-----cccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE--CC-EEEEEC
Confidence 0000 0011122222 45556666644 5689999998764332110011 11122222 44 677777
Q ss_pred eC---------CCeEEEEECCCCCccceEEccCCCCeEEEEEecCCCEEEEEeCC-----CeEEEEEcCCCcEEEEEeee
Q 003822 613 SF---------DQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLVSAVD-----NEVRQLLAVDGRVHLNFGIT 678 (793)
Q Consensus 613 s~---------Dg~IrIWDlrt~~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs~D-----g~I~IwDl~tg~~~~~l~~~ 678 (793)
+. -..+.+||+.+.....+...+......++... +++.++.|+.+ ..+.+||..+.+... +...
T Consensus 157 G~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~-~~~~ 234 (306)
T 3ii7_A 157 GSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKM-VSPM 234 (306)
T ss_dssp CEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCEETTEEBCCEEEEETTTTEEEE-CCCC
T ss_pred CCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCCcEEE-CCCC
Confidence 64 24588999988644433222221111122222 56666666643 468899998876432 2111
Q ss_pred cCCCCCcEEEEEeeCCCeEEEEEeCC-----CcEEEEEEcCCCc
Q 003822 679 ATGSSQNYTRSYYLNGRDYIVSGSCD-----EHVVRICCAQTGR 717 (793)
Q Consensus 679 ~~~~~~v~s~afspdg~~~L~Sgs~D-----g~II~IWDv~tg~ 717 (793)
+...... .+ ..-++. +++.|+.+ ..+ .+||..+.+
T Consensus 235 p~~r~~~-~~-~~~~~~-i~v~GG~~~~~~~~~~-~~yd~~~~~ 274 (306)
T 3ii7_A 235 PWKGVTV-KC-AAVGSI-VYVLAGFQGVGRLGHI-LEYNTETDK 274 (306)
T ss_dssp SCCBSCC-EE-EEETTE-EEEEECBCSSSBCCEE-EEEETTTTE
T ss_pred CCCccce-eE-EEECCE-EEEEeCcCCCeeeeeE-EEEcCCCCe
Confidence 1111111 22 222555 77777754 356 888887764
No 314
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=96.72 E-value=0.00052 Score=69.65 Aligned_cols=104 Identities=20% Similarity=0.288 Sum_probs=78.3
Q ss_pred cceeEEeccCCchhhHHHHHhhcCCceeeEeecccccccccc--cccccceeeEEeecccccccccccccccccccccee
Q 003822 100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLN--MIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICL 177 (793)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (793)
.+|+.++|+++.+..-.- +.+..=-.-+.|+|+.+++..+. ..+.+.+|++|+|.++ .|+.+..+-|..||+|..|
T Consensus 40 ~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L 117 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEP-GVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN-QLTVLPSAVFDRLVHLKEL 117 (229)
T ss_dssp TTCSEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred CCCCEEEcCCCccCccCH-HHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC-cCCccChhHhCcchhhCeE
Confidence 678888888877654210 11111124578999999998884 3578899999999965 8999999999999999999
Q ss_pred ccccccchhhhHHHHHHhcCCcccceeccee
Q 003822 178 SMCETRVGNLWTTIAALSKLPSLAELRFQNW 208 (793)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (793)
.+-..++..+ -.++.++++|++|.+..+
T Consensus 118 ~Ls~N~l~~l---p~~~~~l~~L~~L~L~~N 145 (229)
T 3e6j_A 118 FMCCNKLTEL---PRGIERLTHLTHLALDQN 145 (229)
T ss_dssp ECCSSCCCSC---CTTGGGCTTCSEEECCSS
T ss_pred eccCCccccc---CcccccCCCCCEEECCCC
Confidence 9999888744 356789999999988653
No 315
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=96.71 E-value=0.0017 Score=62.84 Aligned_cols=130 Identities=18% Similarity=0.214 Sum_probs=91.8
Q ss_pred CCCcceeEEeecCCccccchHHHHHHHHHhccceeEEeccCCchhhHHHHHhhcCCceeeEeecccccccccc--ccccc
Q 003822 69 GATEIEAVDVRSGTSCMLTGEFALSLMHAIDQKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLN--MIGEF 146 (793)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 146 (793)
+.+.+..+|+.+-.-..+.+ +...-.+|+..||.++.+..- +-+..--.-+.|+|+.+++..+. +.+.+
T Consensus 17 ~~~~L~~L~l~~n~l~~i~~------~~~~~~~L~~L~Ls~N~l~~~---~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l 87 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPVIEN------LGATLDQFDAIDFSDNEIRKL---DGFPLLRRLKTLLVNNNRICRIGEGLDQAL 87 (176)
T ss_dssp CTTSCEEEECTTSCCCSCCC------GGGGTTCCSEEECCSSCCCEE---CCCCCCSSCCEEECCSSCCCEECSCHHHHC
T ss_pred CcCCceEEEeeCCCCchhHH------hhhcCCCCCEEECCCCCCCcc---cccccCCCCCEEECCCCcccccCcchhhcC
Confidence 45566777774422222211 222234899999999987652 22222235689999999999884 35788
Q ss_pred ceeeEEeeccccccccccc-cccccccccceeccccccchhhhH-HHHHHhcCCcccceeccee
Q 003822 147 KRIHTLNLDYSTSLTSFKE-DCFSCMPNLICLSMCETRVGNLWT-TIAALSKLPSLAELRFQNW 208 (793)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 208 (793)
++|.+|+|+++ .|+.++. +.|..+|+|..|++-+..+..+=. ...++.++|+|+.|.+..+
T Consensus 88 ~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 88 PDLTELILTNN-SLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp TTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred CCCCEEECCCC-cCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcC
Confidence 99999999954 7888886 689999999999998888765422 1336889999999987654
No 316
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=96.63 E-value=0.001 Score=69.01 Aligned_cols=102 Identities=15% Similarity=0.288 Sum_probs=64.9
Q ss_pred cceeEEeccCCchhhHHHHHhhcCCceeeEeecccccccccccccccceeeEEeeccccccccccccccccccccceecc
Q 003822 100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSM 179 (793)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (793)
.+|+..+|+.+.+.. +..+.. -.=+.|+|+.+++..+.-.+.+.+|.+|+|.++ .|+.++ .|..||+|+.|++
T Consensus 85 ~~L~~L~L~~N~l~~--l~~~~~--~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N-~i~~~~--~l~~l~~L~~L~L 157 (263)
T 1xeu_A 85 TKLEELSVNRNRLKN--LNGIPS--ACLSRLFLDNNELRDTDSLIHLKNLEILSIRNN-KLKSIV--MLGFLSKLEVLDL 157 (263)
T ss_dssp SSCCEEECCSSCCSC--CTTCCC--SSCCEEECCSSCCSBSGGGTTCTTCCEEECTTS-CCCBCG--GGGGCTTCCEEEC
T ss_pred CCCCEEECCCCccCC--cCcccc--CcccEEEccCCccCCChhhcCcccccEEECCCC-cCCCCh--HHccCCCCCEEEC
Confidence 466777777665543 112222 344667777777777666667777777777743 466663 5777777777777
Q ss_pred ccccchhhhHHHHHHhcCCcccceecceeeecC
Q 003822 180 CETRVGNLWTTIAALSKLPSLAELRFQNWLCCD 212 (793)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (793)
-..++..+ .++.++++|++|.+..+.+..
T Consensus 158 ~~N~i~~~----~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 158 HGNEITNT----GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp TTSCCCBC----TTSTTCCCCCEEEEEEEEEEC
T ss_pred CCCcCcch----HHhccCCCCCEEeCCCCcccC
Confidence 77776666 567777777777776665543
No 317
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=96.55 E-value=0.0021 Score=67.71 Aligned_cols=102 Identities=19% Similarity=0.334 Sum_probs=56.9
Q ss_pred cceeEEeccCCchhhHHHHHhhcCCceeeEeecccccccccccccccceeeEEeeccccccccccccccccccccceecc
Q 003822 100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSM 179 (793)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (793)
.+|+..+|.++.+..- ..+. .--+=+.|+|+.+++..+...+.+.+|.+|+|..+ .|+.+.. |..+|+|+.|.+
T Consensus 112 ~~L~~L~L~~n~i~~~--~~l~-~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N-~l~~~~~--l~~l~~L~~L~L 185 (291)
T 1h6t_A 112 KKLKSLSLEHNGISDI--NGLV-HLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDN-QISDIVP--LAGLTKLQNLYL 185 (291)
T ss_dssp TTCCEEECTTSCCCCC--GGGG-GCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSS-CCCCCGG--GTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCCCC--hhhc-CCCCCCEEEccCCcCCcchhhccCCCCCEEEccCC-ccccchh--hcCCCccCEEEC
Confidence 3555666655544331 1111 11123556666666666666666666666666633 5666554 666666666666
Q ss_pred ccccchhhhHHHHHHhcCCcccceecceeeec
Q 003822 180 CETRVGNLWTTIAALSKLPSLAELRFQNWLCC 211 (793)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (793)
...++..+ .++.+|++|+.|.+..+-+.
T Consensus 186 ~~N~i~~l----~~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 186 SKNHISDL----RALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp CSSCCCBC----GGGTTCTTCSEEEEEEEEEE
T ss_pred CCCcCCCC----hhhccCCCCCEEECcCCccc
Confidence 66666554 34666666666666665443
No 318
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=96.50 E-value=0.23 Score=53.10 Aligned_cols=160 Identities=11% Similarity=0.125 Sum_probs=106.3
Q ss_pred eEEEEEccCCCEEEEEE-CCCcEEEEECCCCcEEEEEccc----C--CCCeEEEEE---cCCCCcEEEEEe---------
Q 003822 553 LTSVHVNSMDELFLASG-YSKNIALYDINSGRRLQVFADM----H--KEHINVVKF---SNHSPSIFATSS--------- 613 (793)
Q Consensus 553 V~sv~~s~~~~~lla~g-~Dg~I~IWDl~tg~~l~~~~~g----h--~~~V~sv~f---spdg~~~LaTgs--------- 613 (793)
..+++|++..+.++.++ ..++|..||...+........+ . ...+..+.| .|++ .++++..
T Consensus 15 PE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~g-rL~vv~~~~~af~~~g 93 (334)
T 2p9w_A 15 PEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSK-RLFAVMKNAKSFNFAD 93 (334)
T ss_dssp CSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCC-EEEEEEEETTTTCTTS
T ss_pred CcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCC-cEEEEEcccccccccc
Confidence 45788888889999988 6899999999866544332211 1 114579999 6886 7777544
Q ss_pred ----CCCeEEEEECC---CCCccceEEcc------------CCCCeEEEEEecCCCEEEEEeCC-CeEEEEEcCCCcEEE
Q 003822 614 ----FDQDVKLWDLR---QKPIQPCYTAS------------SSKGNVMVCFSPDDHYLLVSAVD-NEVRQLLAVDGRVHL 673 (793)
Q Consensus 614 ----~Dg~IrIWDlr---t~~~~~~~~l~------------~~~~~vsv~fSpdg~~Lasgs~D-g~I~IwDl~tg~~~~ 673 (793)
.+..|..||+. +++......+. .......++..++|+.-++++.. +.|..++.. |+.+.
T Consensus 94 ~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pd-G~~~~ 172 (334)
T 2p9w_A 94 QSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSAD-GKTVS 172 (334)
T ss_dssp CCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTT-SCCEE
T ss_pred cccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCC-CCEEe
Confidence 26779999999 66544333332 11134469999999998988888 887777754 33333
Q ss_pred EEeeec---CCCCCcEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCC
Q 003822 674 NFGITA---TGSSQNYTRSYYLNGRDYIVSGSCDEHVVRICCAQTG 716 (793)
Q Consensus 674 ~l~~~~---~~~~~v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg 716 (793)
.+.... ........+++.|+|. .|++....|.+ ..+|+.+.
T Consensus 173 ~~~~~~~~~~~~~G~nGIv~~pdg~-~Liv~~~~g~L-~~fD~~~p 216 (334)
T 2p9w_A 173 TFAWESGNGGQRPGYSGITFDPHSN-KLIAFGGPRAL-TAFDVSKP 216 (334)
T ss_dssp EEEECCCCSSSCCSCSEEEEETTTT-EEEEESSSSSE-EEEECSSS
T ss_pred eeeecCCCcccccCcceEEEeCCCC-EEEEEcCCCeE-EEEcCCCC
Confidence 332211 1112355889999998 55555448998 88898754
No 319
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=96.46 E-value=0.0029 Score=67.43 Aligned_cols=109 Identities=20% Similarity=0.240 Sum_probs=56.3
Q ss_pred ccceeEEeccCC-chhhHHHHHhhcCCceeeEeecccc-cccc---cccccccc-eeeEEeecccc-ccc-ccccccccc
Q 003822 99 DQKLRVVDLHDS-SFGKDFIRNLSQRGLMCEVLNLRSS-RFRK---LNMIGEFK-RIHTLNLDYST-SLT-SFKEDCFSC 170 (793)
Q Consensus 99 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~-~~~~~~~~~~~-~~~-~~~~~~~~~ 170 (793)
..+||..+|..+ .++.+.+..+...=-+=+.|+|+.+ .+.. ..+.+.++ +|++|+|.++. .++ .--...|..
T Consensus 141 ~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~ 220 (336)
T 2ast_B 141 NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRR 220 (336)
T ss_dssp CTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHH
T ss_pred CCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhh
Confidence 456777777766 4554434433322223356666655 5543 23345556 66666666654 343 111224455
Q ss_pred ccccceecccccc-chhhhHHHHHHhcCCcccceecceee
Q 003822 171 MPNLICLSMCETR-VGNLWTTIAALSKLPSLAELRFQNWL 209 (793)
Q Consensus 171 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (793)
||+|+.|.+.+.. +.+ ....++.++|+|++|.+..|-
T Consensus 221 ~~~L~~L~l~~~~~l~~--~~~~~l~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 221 CPNLVHLDLSDSVMLKN--DCFQEFFQLNYLQHLSLSRCY 258 (336)
T ss_dssp CTTCSEEECTTCTTCCG--GGGGGGGGCTTCCEEECTTCT
T ss_pred CCCCCEEeCCCCCcCCH--HHHHHHhCCCCCCEeeCCCCC
Confidence 6666666665554 332 123355666666666666553
No 320
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=96.45 E-value=0.52 Score=54.91 Aligned_cols=199 Identities=6% Similarity=0.032 Sum_probs=120.2
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcc
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSI 535 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~ 535 (793)
+.+++|++.++.++++-...+.|+.++++.......+. ..-....++++....+++.++-+..+.|.+.++......
T Consensus 351 ~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~--~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~- 427 (619)
T 3s94_A 351 AIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVT--AQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRK- 427 (619)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-
T ss_pred cEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEE--CCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeEE-
Confidence 78999999666666666678899999987644333332 222355677764235556666566788999988764321
Q ss_pred cccccCCceeEecCCCCeEEEEEccCCCEEEEEEC--CCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEe
Q 003822 536 RGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY--SKNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPSIFATSS 613 (793)
Q Consensus 536 ~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~--Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs 613 (793)
.+.........++++.|..+.++.+.. .+.|...++. |.....+....-...+.+++++++..++++=+
T Consensus 428 --------~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~d-G~~~~~l~~~~l~~P~GlalD~~~~~LY~aD~ 498 (619)
T 3s94_A 428 --------ILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALD-GSDRVVLVNTSLGWPNGLALDYDEGKIYWGDA 498 (619)
T ss_dssp --------EEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCSCEEEECSSCSCEEEEEEETTTTEEEEEET
T ss_pred --------EEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccC-CCccEEEEeCCCCCCeeeEEcccCCEEEEEEC
Confidence 111123356899999998788777753 3677777776 33223332234567889999987746666656
Q ss_pred CCCeEEEEECCCCCccceEEccCCCCeEEEEEecCCCEEEEEe-CCCeEEEEEcCCC
Q 003822 614 FDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLVSA-VDNEVRQLLAVDG 669 (793)
Q Consensus 614 ~Dg~IrIWDlrt~~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs-~Dg~I~IwDl~tg 669 (793)
..+.|..+++.......+.. ..-..+..++... .+|+.+. ..+.|...|..+|
T Consensus 499 ~~~~I~~~~~dG~~~~~~~~-~~l~~P~glav~~--~~ly~tD~~~~~I~~~~k~~g 552 (619)
T 3s94_A 499 KTDKIEVMNTDGTGRRVLVE-DKIPHIFGFTLLG--DYVYWTDWQRRSIERVHKRSA 552 (619)
T ss_dssp TTTEEEEEESSSCCCEEEEE-CCCCSSCCEEEET--TEEEEECTTSSCEEEEESSSC
T ss_pred CCCEEEEEecCCCceEEEec-cCCCCcEEEEEEC--CEEEEeecCCCeEEEEEcCCC
Confidence 66889999987654332222 1112233344432 2444443 3445666666655
No 321
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=96.44 E-value=0.0022 Score=74.97 Aligned_cols=104 Identities=19% Similarity=0.361 Sum_probs=74.8
Q ss_pred cceeEEeccCCchhhHHHHHhhcCCceeeEeecccccccccccccccceeeEEeeccccccccccccccccccccceecc
Q 003822 100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSM 179 (793)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (793)
.+|+..+|.++.+.. +..+. .=-+-+.|+|+.+++..+...+.+.+|..|+|..+ .|+.+.. |..||+|..|.+
T Consensus 109 ~~L~~L~Ls~N~l~~--l~~l~-~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N-~l~~~~~--l~~l~~L~~L~L 182 (605)
T 1m9s_A 109 KKLKSLSLEHNGISD--INGLV-HLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDN-QISDIVP--LAGLTKLQNLYL 182 (605)
T ss_dssp TTCCEEECTTSCCCC--CGGGG-GCTTCSEEECCSSCCCCCGGGGSCTTCSEEECCSS-CCCCCGG--GTTCTTCCEEEC
T ss_pred CCCCEEEecCCCCCC--Ccccc-CCCccCEEECCCCccCCchhhcccCCCCEEECcCC-cCCCchh--hccCCCCCEEEC
Confidence 467777777766553 11111 11234678888888888877888888888888854 6777765 888888888888
Q ss_pred ccccchhhhHHHHHHhcCCcccceecceeeecCC
Q 003822 180 CETRVGNLWTTIAALSKLPSLAELRFQNWLCCDD 213 (793)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (793)
-..++..+ .+|..|++|++|.+..|-+...
T Consensus 183 s~N~i~~l----~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 183 SKNHISDL----RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp CSSCCCBC----GGGTTCTTCSEEECCSEEEECC
T ss_pred cCCCCCCC----hHHccCCCCCEEEccCCcCcCC
Confidence 88877775 4688888888888888877654
No 322
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=96.44 E-value=0.0041 Score=69.34 Aligned_cols=133 Identities=17% Similarity=0.168 Sum_probs=91.8
Q ss_pred cceeEEeecCCccccchHHHHHHHHHh--ccceeEEeccCCchhhHHHHHhhcCCc----eeeEeecccccccc------
Q 003822 72 EIEAVDVRSGTSCMLTGEFALSLMHAI--DQKLRVVDLHDSSFGKDFIRNLSQRGL----MCEVLNLRSSRFRK------ 139 (793)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~------ 139 (793)
.+..+|+. .|.+....+-.+-.++ +.+|+..||+++.++...+..+++.=- .=+.|+|+.+++..
T Consensus 29 ~L~~L~L~---~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l 105 (461)
T 1z7x_W 29 QCQVVRLD---DCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVL 105 (461)
T ss_dssp TCSEEEEE---SSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CccEEEcc---CCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHH
Confidence 46667774 3456665444443333 577999999998888877766654322 36788898888775
Q ss_pred cccccccceeeEEeeccccccc-----cccccccccccccceeccccccchhhh--HHHHHHhcCCcccceeccee
Q 003822 140 LNMIGEFKRIHTLNLDYSTSLT-----SFKEDCFSCMPNLICLSMCETRVGNLW--TTIAALSKLPSLAELRFQNW 208 (793)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 208 (793)
....+...+|++|+|.++. ++ .|.+.++.+.++|+.|++-..++.... ....+++++|+|++|.+..|
T Consensus 106 ~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n 180 (461)
T 1z7x_W 106 SSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNN 180 (461)
T ss_dssp HHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSS
T ss_pred HHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCC
Confidence 3455677889999998654 54 455567777888888888777776543 33567788888888888764
No 323
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.39 E-value=0.52 Score=49.27 Aligned_cols=228 Identities=10% Similarity=0.054 Sum_probs=113.4
Q ss_pred EEEEEeCCCeEEEEECCCCeEEEEEeccCC-CCCEEEEEEeeCCCCEEEEEEc----C-------CcEEEEEcCCCCCcc
Q 003822 468 LMVFGTLDGEIVVVNHENENIVSYIPSFGA-MNSVLGLCWLKKYPSKLIAGSD----N-------GSLKLYDIRHMPPSI 535 (793)
Q Consensus 468 ~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h-~~~V~sv~fs~~~g~~Lasgs~----D-------gtV~vWDl~~~~~~~ 535 (793)
+++.|+ ..+.+||..+++... ...... ...-.+++ . .++..++.|+. + ..+..||..+.+-
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~-~~~~~p~~r~~~~~~-~-~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W-- 79 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYC-ASLSSQVPKNHVSLV-T-KENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEW-- 79 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEE-EECCCCSCSSEEEEE-C-TTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEE--
T ss_pred EEEEcC--CceEEECCCCCeEec-CCCCCCCCccceEEE-E-ECCEEEEEcCcccCCCCCccccccceEEecCCCCeE--
Confidence 455665 579999999887643 222111 12222333 2 47778888874 1 1266778776542
Q ss_pred cccccCCceeEecCCCCeEEEEEccCCCEEEEEECC--------CcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCc
Q 003822 536 RGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYS--------KNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPS 607 (793)
Q Consensus 536 ~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~D--------g~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~ 607 (793)
....... .... ....+.+ .+..++.||.+ ..+.+||..+.+-...-.-.....-.+++. -++ .
T Consensus 80 ~~~~~~p-~~r~----~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~-~ 150 (315)
T 4asc_A 80 LGMPPLP-SPRC----LFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS-HMD-L 150 (315)
T ss_dssp EECCCBS-SCEE----SCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETT-E
T ss_pred EECCCCC-cchh----ceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE-ECC-E
Confidence 1111110 0011 1112222 45555566522 568999998875332211001111112222 244 6
Q ss_pred EEEEEeC-C-----CeEEEEECCCCCccceEEccCCCCeEEEEEecCCCEEEEEeCCC-----eEEEEEcCCCcEEEEEe
Q 003822 608 IFATSSF-D-----QDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLVSAVDN-----EVRQLLAVDGRVHLNFG 676 (793)
Q Consensus 608 ~LaTgs~-D-----g~IrIWDlrt~~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs~Dg-----~I~IwDl~tg~~~~~l~ 676 (793)
+++.|+. + ..+.+||..+.....+..++......+++. -+++.++.|+.++ .+.+||..+.+... +.
T Consensus 151 iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~-~~ 228 (315)
T 4asc_A 151 VYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATV-HDGRIIVAAGVTDTGLTSSAEVYSITDNKWAP-FE 228 (315)
T ss_dssp EEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEEEEECSSSEEEEEEEEETTTTEEEE-EC
T ss_pred EEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEE-ECCEEEEEeccCCCCccceEEEEECCCCeEEE-CC
Confidence 7777776 2 358999998864333322222111112222 2667777777544 58889998876533 22
Q ss_pred eecCCCCCcEEEEEeeCCCeEEEEEeCCC--------------cEEEEEEcCCCc
Q 003822 677 ITATGSSQNYTRSYYLNGRDYIVSGSCDE--------------HVVRICCAQTGR 717 (793)
Q Consensus 677 ~~~~~~~~v~s~afspdg~~~L~Sgs~Dg--------------~II~IWDv~tg~ 717 (793)
..+...... .+...++. +++.|+.++ .+ .+||..+.+
T Consensus 229 ~~p~~r~~~--~~~~~~~~-l~v~GG~~~~~~~~~~~~~~~~~~v-~~yd~~~~~ 279 (315)
T 4asc_A 229 AFPQERSSL--SLVSLVGT-LYAIGGFATLETESGELVPTELNDI-WRYNEEEKK 279 (315)
T ss_dssp CCSSCCBSC--EEEEETTE-EEEEEEEEEEECTTSCEEEEEEEEE-EEEETTTTE
T ss_pred CCCCcccce--eEEEECCE-EEEECCccccCcCCccccccccCcE-EEecCCCCh
Confidence 111111111 22233555 666666532 24 677777664
No 324
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=96.33 E-value=0.0079 Score=65.18 Aligned_cols=162 Identities=16% Similarity=0.206 Sum_probs=91.6
Q ss_pred eEEEeeccccCCCchhHHHHHhhcCCCcceeEEeecCCccccchHHHHHHHHHhccceeEEeccCCchhhHHHHHhhcC-
Q 003822 45 TLEIILEYLKDIDFQPLLEVCMQIGATEIEAVDVRSGTSCMLTGEFALSLMHAIDQKLRVVDLHDSSFGKDFIRNLSQR- 123 (793)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 123 (793)
.+.+-=.++.+.....+.+++... ...++.+|+.+-.-.....+.....++..+.+|+..||.++.++......+.+.
T Consensus 55 ~L~Ls~N~l~~~~~~~l~~~l~~~-~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l 133 (362)
T 3goz_A 55 SLNLSGNSLGFKNSDELVQILAAI-PANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAF 133 (362)
T ss_dssp EEECCSSCGGGSCHHHHHHHHHTS-CTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHH
T ss_pred EEECcCCCCCHHHHHHHHHHHhcc-CCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHH
Confidence 344444455666555555554433 256777777432222222233333444444678888888887776655544321
Q ss_pred ---CceeeEeeccccccccccc------ccccc-eeeEEeecccccccccccc----cccccc-ccceeccccccchh--
Q 003822 124 ---GLMCEVLNLRSSRFRKLNM------IGEFK-RIHTLNLDYSTSLTSFKED----CFSCMP-NLICLSMCETRVGN-- 186 (793)
Q Consensus 124 ---~~~~~~~~~~~~~~~~~~~------~~~~~-~~~~~~~~~~~~~~~~~~~----~~~~~~-~~~~~~~~~~~~~~-- 186 (793)
.-+=+.|+|+.+++....+ .+.++ +|++|+|.++ .|+..... .+..+| +|+.|++-..++..
T Consensus 134 ~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~ 212 (362)
T 3goz_A 134 SNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGN-NLASKNCAELAKFLASIPASVTSLDLSANLLGLKS 212 (362)
T ss_dssp TTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSC
T ss_pred HhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCC-CCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhH
Confidence 1245678888777763222 23344 7888888854 56665543 344554 88888777777655
Q ss_pred hhHHHHHHhcCC-cccceeccee
Q 003822 187 LWTTIAALSKLP-SLAELRFQNW 208 (793)
Q Consensus 187 ~~~~~~~~~~~~-~~~~~~~~~~ 208 (793)
.=....++.+++ +|++|.+..|
T Consensus 213 ~~~l~~~l~~~~~~L~~L~Ls~N 235 (362)
T 3goz_A 213 YAELAYIFSSIPNHVVSLNLCLN 235 (362)
T ss_dssp HHHHHHHHHHSCTTCCEEECCSS
T ss_pred HHHHHHHHhcCCCCceEEECcCC
Confidence 111244566644 7888877664
No 325
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=96.32 E-value=0.0014 Score=67.29 Aligned_cols=105 Identities=17% Similarity=0.211 Sum_probs=57.0
Q ss_pred cceeEEeccCCchhhHHHHHhhcCCceeeEeecccccccccc--cccccceeeEEeecccccccccccccccccccccee
Q 003822 100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLN--MIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICL 177 (793)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (793)
.+|+..+|.++.+..-. .+.+..=-.=+.|+|+.+++..+. ..+.+.+|++|+|.++ .|+.+...-|..|++|+.|
T Consensus 59 ~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L 136 (251)
T 3m19_A 59 TKLTWLNLDYNQLQTLS-AGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGN-QLKSLPSGVFDRLTKLKEL 136 (251)
T ss_dssp TTCCEEECTTSCCCCCC-TTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred ccCCEEECCCCcCCccC-HhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCC-cCCCcChhHhccCCcccEE
Confidence 45666666666553211 000111113356666666666554 3355666666666643 6666666666666666666
Q ss_pred ccccccchhhhHHHHHHhcCCcccceeccee
Q 003822 178 SMCETRVGNLWTTIAALSKLPSLAELRFQNW 208 (793)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (793)
.+-..++..+= ..++.+|++|++|.++.+
T Consensus 137 ~Ls~N~l~~~~--~~~~~~l~~L~~L~L~~N 165 (251)
T 3m19_A 137 RLNTNQLQSIP--AGAFDKLTNLQTLSLSTN 165 (251)
T ss_dssp ECCSSCCCCCC--TTTTTTCTTCCEEECCSS
T ss_pred ECcCCcCCccC--HHHcCcCcCCCEEECCCC
Confidence 66665554321 124566666666666554
No 326
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=96.30 E-value=1.9 Score=48.05 Aligned_cols=110 Identities=12% Similarity=0.200 Sum_probs=62.1
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEecc------CCCCCEEEEEEeeCC---CCEEEEEE-c------
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSF------GAMNSVLGLCWLKKY---PSKLIAGS-D------ 519 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~------~h~~~V~sv~fs~~~---g~~Lasgs-~------ 519 (793)
++.|+|.| +++++++-...+.|++++..+++........ ........|+|+ ++ +..|+.+. .
T Consensus 29 P~~~a~~p-dG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~-Pdf~~~g~lYv~~s~~~~~~~ 106 (454)
T 1cru_A 29 PHALLWGP-DNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFH-PDFKNNPYIYISGTFKNPKST 106 (454)
T ss_dssp EEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEEC-TTTTTSCEEEEEEEEECTTC-
T ss_pred ceEEEEcC-CCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEEC-CCcCcCCEEEEEEeccccCCC
Confidence 88999999 8887777655457998887656543322221 124678899997 43 34444433 2
Q ss_pred ------CCcEEEEEcCCCCCcccccccCCceeE-e--cCCCCeEEEEEccCCCEEEEEEC
Q 003822 520 ------NGSLKLYDIRHMPPSIRGMHYGAGTVT-F--DEFDQLTSVHVNSMDELFLASGY 570 (793)
Q Consensus 520 ------DgtV~vWDl~~~~~~~~~~~~~~~~~~-~--~~~~~V~sv~~s~~~~~lla~g~ 570 (793)
...|.-|+.......+... ...+. + ........|.|.+++..+++.|.
T Consensus 107 ~~~~~~~~~v~r~~~~~~~~~~~~~---~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 107 DKELPNQTIIRRYTYNKSTDTLEKP---VDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp -CCSCEEEEEEEEEEETTTTEEEEE---EEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred ccccccccEEEEEEECCCCCCcCCc---EEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 1345555554322111000 00000 1 11234789999998887777664
No 327
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=96.30 E-value=0.011 Score=64.35 Aligned_cols=158 Identities=15% Similarity=0.184 Sum_probs=87.6
Q ss_pred eEEEeeccccCCCchhHHHHHhhcCCCcceeEEeecCCccccchHHHHHH---HHHhc--------cceeEEeccCCchh
Q 003822 45 TLEIILEYLKDIDFQPLLEVCMQIGATEIEAVDVRSGTSCMLTGEFALSL---MHAID--------QKLRVVDLHDSSFG 113 (793)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~--------~~~~~~~~~~~~~~ 113 (793)
.+.+--.++.+....++.+.+.. ...+..+|+. .|.+...-+..+ ++... .+|+..+|..+.++
T Consensus 98 ~L~Ls~n~l~~~~~~~l~~~l~~--~~~L~~L~L~---~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~ 172 (386)
T 2ca6_A 98 TVRLSDNAFGPTAQEPLIDFLSK--HTPLEHLYLH---NNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLE 172 (386)
T ss_dssp EEECCSCCCCTTTHHHHHHHHHH--CTTCCEEECC---SSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCT
T ss_pred EEECCCCcCCHHHHHHHHHHHHh--CCCCCEEECc---CCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCC
Confidence 33333344444444445555433 2355566652 334443322222 22221 57777777777776
Q ss_pred hHHHHHhhc---CCceeeEeeccccccccc------c-cccccceeeEEeecccccc-----ccccccccccccccceec
Q 003822 114 KDFIRNLSQ---RGLMCEVLNLRSSRFRKL------N-MIGEFKRIHTLNLDYSTSL-----TSFKEDCFSCMPNLICLS 178 (793)
Q Consensus 114 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~------~-~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 178 (793)
..-+..|.. .--.=+.|+|+.+++..- . ..+.+.+|.+|+|.++. | ..+.. .|..+|+|+.|+
T Consensus 173 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~-l~~~g~~~l~~-~l~~~~~L~~L~ 250 (386)
T 2ca6_A 173 NGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNT-FTHLGSSALAI-ALKSWPNLRELG 250 (386)
T ss_dssp GGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSC-CHHHHHHHHHH-HGGGCTTCCEEE
T ss_pred cHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCC-CCcHHHHHHHH-HHccCCCcCEEE
Confidence 444443221 111446777777777632 2 45667778888887654 5 33333 677778888887
Q ss_pred cccccchhhh--HHHHHHhc--CCcccceecceee
Q 003822 179 MCETRVGNLW--TTIAALSK--LPSLAELRFQNWL 209 (793)
Q Consensus 179 ~~~~~~~~~~--~~~~~~~~--~~~~~~~~~~~~~ 209 (793)
+...++...- ....+|.. +|+|++|.+..|.
T Consensus 251 L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~ 285 (386)
T 2ca6_A 251 LNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE 285 (386)
T ss_dssp CTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSC
T ss_pred CCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCc
Confidence 7777766542 22355633 7888888777653
No 328
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=96.27 E-value=0.0015 Score=67.83 Aligned_cols=105 Identities=25% Similarity=0.332 Sum_probs=67.2
Q ss_pred cceeEEeccCCchhhHHHHHhhcCCceeeEeecccccccccc--cccccceeeEEeecccccccccccccccccccccee
Q 003822 100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLN--MIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICL 177 (793)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (793)
.+||.++|.++.+.. .-...+..=-+=+.|+|+.+++..+. ..+.+.+|.+|+|.. ..++.+....|..||+|+.|
T Consensus 61 ~~L~~L~l~~n~l~~-i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L 138 (270)
T 2o6q_A 61 TKLRLLYLNDNKLQT-LPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDR-NQLKSLPPRVFDSLTKLTYL 138 (270)
T ss_dssp TTCCEEECCSSCCSC-CCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCS-SCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCEEECCCCccCe-eChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCC-CccCeeCHHHhCcCcCCCEE
Confidence 467888887765541 11111111123467777777777665 345677788888874 56777777778888888888
Q ss_pred ccccccchhhhHHHHHHhcCCcccceeccee
Q 003822 178 SMCETRVGNLWTTIAALSKLPSLAELRFQNW 208 (793)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (793)
.+-..++..+= ..++.+|++|++|.+..+
T Consensus 139 ~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~n 167 (270)
T 2o6q_A 139 SLGYNELQSLP--KGVFDKLTSLKELRLYNN 167 (270)
T ss_dssp ECCSSCCCCCC--TTTTTTCTTCCEEECCSS
T ss_pred ECCCCcCCccC--HhHccCCcccceeEecCC
Confidence 77777665432 234677788888877654
No 329
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=96.24 E-value=0.0016 Score=66.72 Aligned_cols=105 Identities=19% Similarity=0.214 Sum_probs=67.9
Q ss_pred cceeEEeccCCchhhHHHHHhhcCCceeeEeeccccccccccc--ccccceeeEEeecccccccccccccccccccccee
Q 003822 100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLNM--IGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICL 177 (793)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (793)
..|+.++|+++.+..-.-. .+.+=-+=+.|+|+.+.+..+.- .+.+.+|++|+|.+ ..|+.+..+-|..||+|..|
T Consensus 35 ~~l~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L 112 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDA-TFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN-NQLASLPLGVFDHLTQLDKL 112 (251)
T ss_dssp TTCCEEECTTSCCCCCCTT-TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT-SCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCEEEccCCCcCccCHh-HhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC-CcccccChhHhcccCCCCEE
Confidence 4677777777665432110 11111234678888877777654 46677888888874 56778888888888888888
Q ss_pred ccccccchhhhHHHHHHhcCCcccceeccee
Q 003822 178 SMCETRVGNLWTTIAALSKLPSLAELRFQNW 208 (793)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (793)
.+-..++..+= ..++.++++|++|.+..+
T Consensus 113 ~L~~N~l~~~~--~~~~~~l~~L~~L~Ls~N 141 (251)
T 3m19_A 113 YLGGNQLKSLP--SGVFDRLTKLKELRLNTN 141 (251)
T ss_dssp ECCSSCCCCCC--TTTTTTCTTCCEEECCSS
T ss_pred EcCCCcCCCcC--hhHhccCCcccEEECcCC
Confidence 87777666331 234677788888877654
No 330
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=96.22 E-value=0.0035 Score=68.70 Aligned_cols=133 Identities=18% Similarity=0.162 Sum_probs=96.2
Q ss_pred cceeEEeecCCccccchHHHHHHHHHh---ccceeEEeccCCchhhHHHHHhhcCCceeeEeeccccccccccc--c---
Q 003822 72 EIEAVDVRSGTSCMLTGEFALSLMHAI---DQKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLNM--I--- 143 (793)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--- 143 (793)
.+..+|+ +.|.+....+-.+...+ +..|+.+||.++.++.+.++.|+..=-+++.|+|+.+++....+ .
T Consensus 73 ~L~~L~L---s~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~ 149 (372)
T 3un9_A 73 SLRQLNL---AGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDL 149 (372)
T ss_dssp TCCEEEC---TTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHH
T ss_pred hCCEEEe---cCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHH
Confidence 4566666 44556666655555553 37899999999999988887776543468999999998754322 1
Q ss_pred --cccceeeEEeecccccccccccccc----ccccccceeccccccchhh--hHHHHHHhcCCcccceeccee
Q 003822 144 --GEFKRIHTLNLDYSTSLTSFKEDCF----SCMPNLICLSMCETRVGNL--WTTIAALSKLPSLAELRFQNW 208 (793)
Q Consensus 144 --~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 208 (793)
....+|.+|+|.+| .|+...-..+ ..+|+|+.|++-..++.+. -....+|.++++|++|....|
T Consensus 150 L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N 221 (372)
T 3un9_A 150 LLHDQCQITTLRLSNN-PLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYN 221 (372)
T ss_dssp HHSTTCCCCEEECCSS-CCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSS
T ss_pred HHhcCCccceeeCCCC-CCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCC
Confidence 13467999999976 5766443333 6789999999988888763 344678899999999998875
No 331
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=96.22 E-value=0.0015 Score=67.98 Aligned_cols=78 Identities=22% Similarity=0.341 Sum_probs=38.5
Q ss_pred eEeeccccccccccc--ccccceeeEEeeccccccccccccccccccccceeccccccchhhhHHHHHHhcCCcccceec
Q 003822 128 EVLNLRSSRFRKLNM--IGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELRF 205 (793)
Q Consensus 128 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (793)
+.|+|+.+++..+.- .+.+.+|.+|+|.+ ..++.+....|..||+|+.|.+-..++..+ ...++.++++|++|.+
T Consensus 88 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~l 164 (272)
T 3rfs_A 88 TYLILTGNQLQSLPNGVFDKLTNLKELVLVE-NQLQSLPDGVFDKLTNLTYLNLAHNQLQSL--PKGVFDKLTNLTELDL 164 (272)
T ss_dssp CEEECTTSCCCCCCTTTTTTCTTCCEEECTT-SCCCCCCTTTTTTCTTCCEEECCSSCCCCC--CTTTTTTCTTCCEEEC
T ss_pred CEEECCCCccCccChhHhcCCcCCCEEECCC-CcCCccCHHHhccCCCCCEEECCCCccCcc--CHHHhccCccCCEEEC
Confidence 455555555554433 34455555555553 245555555555555555555554444321 1122445555555555
Q ss_pred cee
Q 003822 206 QNW 208 (793)
Q Consensus 206 ~~~ 208 (793)
..|
T Consensus 165 ~~n 167 (272)
T 3rfs_A 165 SYN 167 (272)
T ss_dssp CSS
T ss_pred CCC
Confidence 544
No 332
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=96.17 E-value=0.0041 Score=66.01 Aligned_cols=99 Identities=20% Similarity=0.252 Sum_probs=58.5
Q ss_pred cceeEEeccCCchhhHHHHHhhcCCceeeEeecccccccccccccccceeeEEeeccccccccccccccccccccceecc
Q 003822 100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSM 179 (793)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (793)
.+|+..+|.++.+..-- . +..=-.=+.|+|+.+++..+.-.+.+.+|.+|+|.++ .|+.+.. |..||+|+.|++
T Consensus 63 ~~L~~L~L~~n~i~~~~--~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~l 136 (308)
T 1h6u_A 63 NNLIGLELKDNQITDLA--P-LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTST-QITDVTP--LAGLSNLQVLYL 136 (308)
T ss_dssp TTCCEEECCSSCCCCCG--G-GTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECTTS-CCCCCGG--GTTCTTCCEEEC
T ss_pred CCCCEEEccCCcCCCCh--h-HccCCCCCEEEccCCcCCCchhhcCCCCCCEEECCCC-CCCCchh--hcCCCCCCEEEC
Confidence 45677777666543211 1 1111234566777777766666666677777777643 4666653 677777777777
Q ss_pred ccccchhhhHHHHHHhcCCcccceeccee
Q 003822 180 CETRVGNLWTTIAALSKLPSLAELRFQNW 208 (793)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (793)
...++..+- ++.+|++|++|.+..|
T Consensus 137 ~~n~l~~~~----~l~~l~~L~~L~l~~n 161 (308)
T 1h6u_A 137 DLNQITNIS----PLAGLTNLQYLSIGNA 161 (308)
T ss_dssp CSSCCCCCG----GGGGCTTCCEEECCSS
T ss_pred CCCccCcCc----cccCCCCccEEEccCC
Confidence 666665432 2667777777766543
No 333
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=96.16 E-value=0.0034 Score=66.06 Aligned_cols=99 Identities=15% Similarity=0.273 Sum_probs=63.5
Q ss_pred cceeEEeccCCchhhHHHHHhhcCCceeeEeecccccccccccccccceeeEEeeccccccccccccccccccccceecc
Q 003822 100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSM 179 (793)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (793)
.+|+..+|..+.+..-- . ...=-.=+.|+|+.+++..+.-.+.+.+|.+|+|.++ .|+.+ ..|..||+|+.|++
T Consensus 68 ~~L~~L~L~~n~l~~~~--~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n-~i~~~--~~l~~l~~L~~L~l 141 (291)
T 1h6t_A 68 PNVTKLFLNGNKLTDIK--P-LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHN-GISDI--NGLVHLPQLESLYL 141 (291)
T ss_dssp TTCCEEECCSSCCCCCG--G-GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECTTS-CCCCC--GGGGGCTTCCEEEC
T ss_pred CCCCEEEccCCccCCCc--c-cccCCCCCEEECCCCcCCCChhhccCCCCCEEECCCC-cCCCC--hhhcCCCCCCEEEc
Confidence 56777777776554311 1 1111123667777777777777777777777777744 56666 35677777777777
Q ss_pred ccccchhhhHHHHHHhcCCcccceeccee
Q 003822 180 CETRVGNLWTTIAALSKLPSLAELRFQNW 208 (793)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (793)
-..++..+ .++++|++|++|.+..|
T Consensus 142 ~~n~l~~~----~~l~~l~~L~~L~L~~N 166 (291)
T 1h6t_A 142 GNNKITDI----TVLSRLTKLDTLSLEDN 166 (291)
T ss_dssp CSSCCCCC----GGGGGCTTCSEEECCSS
T ss_pred cCCcCCcc----hhhccCCCCCEEEccCC
Confidence 77776665 46777777777776543
No 334
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=96.14 E-value=0.0036 Score=64.92 Aligned_cols=98 Identities=20% Similarity=0.230 Sum_probs=74.9
Q ss_pred cceeEEeccCCchhhHHHHHhhcCCceeeEeecccccccccccccccceeeEEeeccccccccccccccccccccceecc
Q 003822 100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSM 179 (793)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (793)
.+|+..+|.++.+..-- . +..=-.-+.|+|+.+++..+.-... .+|.+|+|.++ .|+.+. .|..||+|+.|++
T Consensus 63 ~~L~~L~L~~N~i~~~~--~-l~~l~~L~~L~L~~N~l~~l~~~~~-~~L~~L~L~~N-~l~~~~--~l~~l~~L~~L~L 135 (263)
T 1xeu_A 63 TNLKELHLSHNQISDLS--P-LKDLTKLEELSVNRNRLKNLNGIPS-ACLSRLFLDNN-ELRDTD--SLIHLKNLEILSI 135 (263)
T ss_dssp TTCCEEECCSSCCCCCG--G-GTTCSSCCEEECCSSCCSCCTTCCC-SSCCEEECCSS-CCSBSG--GGTTCTTCCEEEC
T ss_pred CCCCEEECCCCccCCCh--h-hccCCCCCEEECCCCccCCcCcccc-CcccEEEccCC-ccCCCh--hhcCcccccEEEC
Confidence 57889999888765321 1 1111245789999999988865555 89999999965 788875 4999999999999
Q ss_pred ccccchhhhHHHHHHhcCCcccceeccee
Q 003822 180 CETRVGNLWTTIAALSKLPSLAELRFQNW 208 (793)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (793)
...++..+ .++.+|++|++|....+
T Consensus 136 s~N~i~~~----~~l~~l~~L~~L~L~~N 160 (263)
T 1xeu_A 136 RNNKLKSI----VMLGFLSKLEVLDLHGN 160 (263)
T ss_dssp TTSCCCBC----GGGGGCTTCCEEECTTS
T ss_pred CCCcCCCC----hHHccCCCCCEEECCCC
Confidence 99888776 47899999999988654
No 335
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=96.13 E-value=0.0018 Score=64.19 Aligned_cols=77 Identities=22% Similarity=0.332 Sum_probs=38.7
Q ss_pred eEeeccccccccccc--ccccceeeEEeeccccccccccccccccccccceeccccccchhhhHHHHHHhcCCcccceec
Q 003822 128 EVLNLRSSRFRKLNM--IGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELRF 205 (793)
Q Consensus 128 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (793)
+.|+|+.+++..+.. .+.+.+|++|+|.++ .|+.+....|..||+|..|.+-..++..+= ..++.++++|++|.+
T Consensus 55 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~l 131 (208)
T 2o6s_A 55 TQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN-QLQSLPNGVFDKLTQLKELALNTNQLQSLP--DGVFDKLTQLKDLRL 131 (208)
T ss_dssp SEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCC--TTTTTTCTTCCEEEC
T ss_pred cEEECCCCccCccChhhcCCCCCcCEEECCCC-cCCccCHhHhcCccCCCEEEcCCCcCcccC--HhHhccCCcCCEEEC
Confidence 455555555554432 244555555555532 455555555555555555555554444321 123455555555555
Q ss_pred ce
Q 003822 206 QN 207 (793)
Q Consensus 206 ~~ 207 (793)
..
T Consensus 132 ~~ 133 (208)
T 2o6s_A 132 YQ 133 (208)
T ss_dssp CS
T ss_pred CC
Confidence 44
No 336
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.09 E-value=0.33 Score=50.66 Aligned_cols=231 Identities=12% Similarity=0.095 Sum_probs=117.1
Q ss_pred CCCEEEEEeCC----CeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEc----C-----CcEEEEEcCCC
Q 003822 465 ISCLMVFGTLD----GEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSD----N-----GSLKLYDIRHM 531 (793)
Q Consensus 465 d~~~Lasgs~D----G~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~----D-----gtV~vWDl~~~ 531 (793)
++.+++.|+.+ ..+.+||..+++....-........ .+++. .++.+++.|+. + ..+.+||..+.
T Consensus 24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~--~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~ 100 (308)
T 1zgk_A 24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSG-LAGCV--VGGLLYAVGGRNNSPDGNTDSSALDCYNPMTN 100 (308)
T ss_dssp CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBS-CEEEE--ETTEEEEECCEEEETTEEEECCCEEEEETTTT
T ss_pred CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCccccc-ceEEE--ECCEEEEECCCcCCCCCCeecceEEEECCCCC
Confidence 55777777742 4689999988775443221111111 12222 25667777665 2 45788888775
Q ss_pred CCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEECC-----CcEEEEECCCCcEEEE--EcccCCCCeEEEEEcCC
Q 003822 532 PPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYS-----KNIALYDINSGRRLQV--FADMHKEHINVVKFSNH 604 (793)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~D-----g~I~IWDl~tg~~l~~--~~~gh~~~V~sv~fspd 604 (793)
+- ........ .......+.+ ++..++.||.+ ..+.+||..+.+-... +.. ....-..+.+ +
T Consensus 101 ~W--~~~~~~p~-----~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~~--~ 168 (308)
T 1zgk_A 101 QW--SPCAPMSV-----PRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLT-RRIGVGVAVL--N 168 (308)
T ss_dssp EE--EECCCCSS-----CCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSS-CCBSCEEEEE--T
T ss_pred eE--eECCCCCc-----CccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCc-cccceEEEEE--C
Confidence 42 11110000 0011122222 45555555532 5688999987654332 111 1111122333 4
Q ss_pred CCcEEEEEeCC-----CeEEEEECCCCCccceEEccCCCCeEEEEEecCCCEEEEEeCC-----CeEEEEEcCCCcEEEE
Q 003822 605 SPSIFATSSFD-----QDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLVSAVD-----NEVRQLLAVDGRVHLN 674 (793)
Q Consensus 605 g~~~LaTgs~D-----g~IrIWDlrt~~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs~D-----g~I~IwDl~tg~~~~~ 674 (793)
+ .+++.|+.+ ..+.+||+.+.....+..++......+++.. +++.++.|+.+ ..+.+||+.+.+...
T Consensus 169 ~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~- 245 (308)
T 1zgk_A 169 R-LLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL-HNCIYAAGGYDGQDQLNSVERYDVETETWTF- 245 (308)
T ss_dssp T-EEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTEEEE-
T ss_pred C-EEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE-CCEEEEEeCCCCCCccceEEEEeCCCCcEEE-
Confidence 4 677877765 4589999987643332222221111122222 66777777654 568999998876532
Q ss_pred EeeecCCCCCcEEEEEeeCCCeEEEEEeCCC-----cEEEEEEcCCCc
Q 003822 675 FGITATGSSQNYTRSYYLNGRDYIVSGSCDE-----HVVRICCAQTGR 717 (793)
Q Consensus 675 l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg-----~II~IWDv~tg~ 717 (793)
+...+.... ...++ ..++. +++.|+.++ .+ .+||..+.+
T Consensus 246 ~~~~p~~r~-~~~~~-~~~~~-i~v~GG~~~~~~~~~v-~~yd~~~~~ 289 (308)
T 1zgk_A 246 VAPMKHRRS-ALGIT-VHQGR-IYVLGGYDGHTFLDSV-ECYDPDTDT 289 (308)
T ss_dssp CCCCSSCCB-SCEEE-EETTE-EEEECCBCSSCBCCEE-EEEETTTTE
T ss_pred CCCCCCCcc-ceEEE-EECCE-EEEEcCcCCCcccceE-EEEcCCCCE
Confidence 211111111 11222 23555 666666543 45 788887764
No 337
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=96.09 E-value=1.9 Score=45.93 Aligned_cols=224 Identities=8% Similarity=0.094 Sum_probs=132.3
Q ss_pred CCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcccccccCCceeEecCCCCeE
Q 003822 475 DGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLT 554 (793)
Q Consensus 475 DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~ 554 (793)
+.+|.|.|+.++..+...+. .....|. + |..+.+|.-. ..+++++|+++..+ ...+....+|.
T Consensus 48 ~~~VvIiDl~n~~~~~Rrpi-~AdsAIM----n-P~~~ViALra-g~~LQiFnletK~k----------lks~~~~e~Vv 110 (365)
T 2xzh_A 48 QAQVVIIDMNDPSNPIRRPI-SADSAIM----N-PASKVIALKA-GKTLQIFNIEMKSK----------MKAHTMTDDVT 110 (365)
T ss_dssp EEEEEEEETTSTTSCEEEEC-CCSEEEE----C-SSSSEEEEEE-TTEEEEEETTTTEE----------EEEEECSSCEE
T ss_pred CCEEEEEECCCCCCcccccc-ccceeee----C-CCccEEEEec-CCeEEEechHHhhh----------hcceecCCccE
Confidence 34799999987655433332 2223332 4 5666776665 67999999998654 22233335666
Q ss_pred EEEEccCCCEEEEEECCCcEEEEECCC-CcEEEEEcccC----CCCeEEEEEcCCCCcEEEEEe------CCCeEEEEEC
Q 003822 555 SVHVNSMDELFLASGYSKNIALYDINS-GRRLQVFADMH----KEHINVVKFSNHSPSIFATSS------FDQDVKLWDL 623 (793)
Q Consensus 555 sv~~s~~~~~lla~g~Dg~I~IWDl~t-g~~l~~~~~gh----~~~V~sv~fspdg~~~LaTgs------~Dg~IrIWDl 623 (793)
--.|-.+...-++ .+..|+-|++.. ..+.+.|.. | ...|..-..+++...++++|- -.|.+.+|..
T Consensus 111 fWkWis~~~L~lV--T~taVyHWs~~~~s~P~kvFdR-~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~ 187 (365)
T 2xzh_A 111 FWKWISLNTVALV--TDNAVYHWSMEGESQPVKMFDR-HSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSV 187 (365)
T ss_dssp EEEECSSSEEEEE--ESSEEEEEESSTTCCCEEEEEC-CGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEET
T ss_pred EEEecCCCeEEEE--cCCcEEEEcccCCCCCceeeec-chhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEee
Confidence 6677443333333 357899999974 467777763 3 345666677788733333443 2367899998
Q ss_pred CCCCccceEEccCCCCeEEEEEecCCC-----EEEEEeC---CCeEEEEEcCCC--------cEEEEEeeec-CCCCCcE
Q 003822 624 RQKPIQPCYTASSSKGNVMVCFSPDDH-----YLLVSAV---DNEVRQLLAVDG--------RVHLNFGITA-TGSSQNY 686 (793)
Q Consensus 624 rt~~~~~~~~l~~~~~~vsv~fSpdg~-----~Lasgs~---Dg~I~IwDl~tg--------~~~~~l~~~~-~~~~~v~ 686 (793)
+.+. ...+.+|.... ..+-.+|. .++-+.. .++++|.++... +....+...+ ...+...
T Consensus 188 er~~---sQ~ieGhaa~F-~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPV 263 (365)
T 2xzh_A 188 DRKV---SQPIEGHAASF-AQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPV 263 (365)
T ss_dssp TTTE---EEEECCSEEEE-EEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEE
T ss_pred cccc---cceeeeeeeee-EEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceE
Confidence 7752 23445554332 22222222 2222222 258899887432 1112222222 2345566
Q ss_pred EEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEEeeee
Q 003822 687 TRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRLRDISL 724 (793)
Q Consensus 687 s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~~~~L 724 (793)
.+..++.-+ .+..-+.-|.+ ++||++||.++..-.+
T Consensus 264 amqvs~kyg-viyviTK~G~i-hlyDleTgt~i~~nrI 299 (365)
T 2xzh_A 264 AMQISEKHD-VVFLITKYGYI-HLYDLETGTCIYMNRI 299 (365)
T ss_dssp EEEEETTTT-EEEEEETTSEE-EEEETTTCCEEEEEEC
T ss_pred EEEecccCC-EEEEEeCCcEE-EEEEcccCcEEEEecc
Confidence 777777766 78888899999 9999999999983333
No 338
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=96.07 E-value=0.002 Score=66.96 Aligned_cols=105 Identities=19% Similarity=0.231 Sum_probs=67.8
Q ss_pred cceeEEeccCCchhhHHHHHhhcCCceeeEeeccccccccccc--ccccceeeEEeecccccccccccccccccccccee
Q 003822 100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLNM--IGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICL 177 (793)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (793)
.+|+.++|.++.+..-. ...+..=-.=+.|+|+.+++..+.- .+.+.+|.+|+|.++ .++.+....|..||+|+.|
T Consensus 85 ~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L 162 (272)
T 3rfs_A 85 TNLTYLILTGNQLQSLP-NGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTEL 162 (272)
T ss_dssp TTCCEEECTTSCCCCCC-TTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred CCCCEEECCCCccCccC-hhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCC-ccCccCHHHhccCccCCEE
Confidence 46888888877654211 1111111234677887777776654 566777888888755 6777777778888888888
Q ss_pred ccccccchhhhHHHHHHhcCCcccceeccee
Q 003822 178 SMCETRVGNLWTTIAALSKLPSLAELRFQNW 208 (793)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (793)
.+...++..+ ...++.++++|++|.+..|
T Consensus 163 ~l~~n~l~~~--~~~~~~~l~~L~~L~L~~N 191 (272)
T 3rfs_A 163 DLSYNQLQSL--PEGVFDKLTQLKDLRLYQN 191 (272)
T ss_dssp ECCSSCCCCC--CTTTTTTCTTCCEEECCSS
T ss_pred ECCCCCcCcc--CHHHhcCCccCCEEECCCC
Confidence 7777766532 1233677778888777665
No 339
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=96.05 E-value=0.0023 Score=63.44 Aligned_cols=105 Identities=15% Similarity=0.255 Sum_probs=79.7
Q ss_pred cceeEEeccCCchhhHHHHHhhcCCceeeEeeccccccccccc--ccccceeeEEeecccccccccccccccccccccee
Q 003822 100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLNM--IGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICL 177 (793)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (793)
.+|+.++|.++.+.. +....+..=-+=+.|+|+.+++..+.- .+.+.+|.+|+|.+ ..|+.+...-|..||+|..|
T Consensus 52 ~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L 129 (208)
T 2o6s_A 52 TSLTQLYLGGNKLQS-LPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNT-NQLQSLPDGVFDKLTQLKDL 129 (208)
T ss_dssp TTCSEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEE
T ss_pred ccCcEEECCCCccCc-cChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCC-CcCcccCHhHhccCCcCCEE
Confidence 578999998887652 222222222345789999999887754 57889999999995 57999999999999999999
Q ss_pred ccccccchhhhHHHHHHhcCCcccceeccee
Q 003822 178 SMCETRVGNLWTTIAALSKLPSLAELRFQNW 208 (793)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (793)
++-..++..+ ...++.++++|++|.+..+
T Consensus 130 ~l~~N~l~~~--~~~~~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 130 RLYQNQLKSV--PDGVFDRLTSLQYIWLHDN 158 (208)
T ss_dssp ECCSSCCSCC--CTTTTTTCTTCCEEECCSC
T ss_pred ECCCCcccee--CHHHhccCCCccEEEecCC
Confidence 9988776643 1234788999999999875
No 340
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=96.03 E-value=0.0024 Score=62.98 Aligned_cols=103 Identities=17% Similarity=0.270 Sum_probs=72.4
Q ss_pred cceeEEeccCCchhhHHHHHhhcCCceeeEeeccccccccccc--ccccceeeEEeecccccccccccccccccccccee
Q 003822 100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLNM--IGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICL 177 (793)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (793)
.+|+..+|.++.+.. +.+-+.+=-.=+.|+|+.+++..+.. .+...+|.+|+|.+ ..|+.+..+.|..||+|+.|
T Consensus 31 ~~l~~L~L~~n~i~~--ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~-N~l~~i~~~~f~~l~~L~~L 107 (193)
T 2wfh_A 31 RDVTELYLDGNQFTL--VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY-NRLRCIPPRTFDGLKSLRLL 107 (193)
T ss_dssp TTCCEEECCSSCCCS--CCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCBCCTTTTTTCTTCCEE
T ss_pred CCCCEEECCCCcCch--hHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC-CccCEeCHHHhCCCCCCCEE
Confidence 467888888776652 11111111234788888888887753 56778889999985 56889998899999999999
Q ss_pred ccccccchhhhHHHHHHhcCCcccceecce
Q 003822 178 SMCETRVGNLWTTIAALSKLPSLAELRFQN 207 (793)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (793)
++-..++..+ ...++..|++|++|.++.
T Consensus 108 ~L~~N~l~~~--~~~~~~~l~~L~~L~L~~ 135 (193)
T 2wfh_A 108 SLHGNDISVV--PEGAFNDLSALSHLAIGA 135 (193)
T ss_dssp ECCSSCCCBC--CTTTTTTCTTCCEEECCS
T ss_pred ECCCCCCCee--ChhhhhcCccccEEEeCC
Confidence 8888776632 123577888888888763
No 341
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=95.99 E-value=0.0037 Score=73.00 Aligned_cols=99 Identities=15% Similarity=0.272 Sum_probs=68.6
Q ss_pred cceeEEeccCCchhhHHHHHhhcCCceeeEeecccccccccccccccceeeEEeeccccccccccccccccccccceecc
Q 003822 100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSM 179 (793)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (793)
.+|+.++|.++.+..-. . +..=-.=+.|+|+.+.+..+.-.+.+.+|.+|+|..+ .|+.+. -|..||+|..|++
T Consensus 65 ~~L~~L~Ls~N~l~~~~--~-l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N-~l~~l~--~l~~l~~L~~L~L 138 (605)
T 1m9s_A 65 PNVTKLFLNGNKLTDIK--P-LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHN-GISDIN--GLVHLPQLESLYL 138 (605)
T ss_dssp TTCCEEECTTSCCCCCG--G-GGGCTTCCEEECCSSCCCCCTTSTTCTTCCEEECTTS-CCCCCG--GGGGCTTCSEEEC
T ss_pred CCCCEEEeeCCCCCCCh--h-hccCCCCCEEECcCCCCCCChhhccCCCCCEEEecCC-CCCCCc--cccCCCccCEEEC
Confidence 56788888777654311 0 1111123678888888888777788888888888844 577763 3778888888888
Q ss_pred ccccchhhhHHHHHHhcCCcccceeccee
Q 003822 180 CETRVGNLWTTIAALSKLPSLAELRFQNW 208 (793)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (793)
...++..+ .+|++|++|++|.+..|
T Consensus 139 s~N~l~~l----~~l~~l~~L~~L~Ls~N 163 (605)
T 1m9s_A 139 GNNKITDI----TVLSRLTKLDTLSLEDN 163 (605)
T ss_dssp CSSCCCCC----GGGGSCTTCSEEECCSS
T ss_pred CCCccCCc----hhhcccCCCCEEECcCC
Confidence 88777776 56788888888877654
No 342
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=95.97 E-value=2.2 Score=45.86 Aligned_cols=246 Identities=11% Similarity=0.097 Sum_probs=124.9
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEE--Ee--ccCCCCCEEEEEEeeC--CCCEEEEE-E--cCCcEEEE
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSY--IP--SFGAMNSVLGLCWLKK--YPSKLIAG-S--DNGSLKLY 526 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~--l~--~~~h~~~V~sv~fs~~--~g~~Lasg-s--~DgtV~vW 526 (793)
++.|+|.| ++.++++--..|.|++++..+++.... +. ..........|+++|. .+..|+.. + .+..|.-|
T Consensus 34 P~~ia~~p-dG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~ 112 (347)
T 3das_A 34 PWGLAPLP-GGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVRM 112 (347)
T ss_dssp EEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEEE
T ss_pred ceEEEEcC-CCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEEE
Confidence 89999999 888777766689999998766654322 21 0123567899999742 12344432 2 34456666
Q ss_pred EcCCCCCcccccccCCceeE-e--cCCCCeEEEEEccCCCEEEEEEC-------------CCcEEEEECCCCc-------
Q 003822 527 DIRHMPPSIRGMHYGAGTVT-F--DEFDQLTSVHVNSMDELFLASGY-------------SKNIALYDINSGR------- 583 (793)
Q Consensus 527 Dl~~~~~~~~~~~~~~~~~~-~--~~~~~V~sv~~s~~~~~lla~g~-------------Dg~I~IWDl~tg~------- 583 (793)
..................+. . ........|.|.|++..+++.|. .|.|.-.+....-
T Consensus 113 ~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nPf~ 192 (347)
T 3das_A 113 LYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGNPFP 192 (347)
T ss_dssp EBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTCSST
T ss_pred EeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCCCCC
Confidence 66542210000000000000 1 11123467899888877777653 2445444544210
Q ss_pred EEEEEcccCCCCeEEEEEcCCCCcEEEEEe-CCCeEEEEECCCC----------------CccceEEccCC-CCeEEEEE
Q 003822 584 RLQVFADMHKEHINVVKFSNHSPSIFATSS-FDQDVKLWDLRQK----------------PIQPCYTASSS-KGNVMVCF 645 (793)
Q Consensus 584 ~l~~~~~gh~~~V~sv~fspdg~~~LaTgs-~Dg~IrIWDlrt~----------------~~~~~~~l~~~-~~~vsv~f 645 (793)
....+..+|. ....++|+|+| .++++-. .|+.-.|--+..+ ...++..+..+ ..+..++|
T Consensus 193 ~~~i~a~G~R-Np~Gla~dp~G-~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~G~~~ 270 (347)
T 3das_A 193 GSPVYSYGHR-NVQGLAWDDKQ-RLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASPSGIAY 270 (347)
T ss_dssp TCCEEEBCCS-BCCEEEECTTC-CEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCEEEEEE
T ss_pred CCeEEeeCCC-CcceEEECCCC-CEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCCCcceEE
Confidence 0112332454 35689999987 5555432 2332233222221 11233333332 34445677
Q ss_pred ecCCCEEEEEeCCCeEEEEEcCCCcEEEE-EeeecCCCCCcEEEEEeeCCCeEEEEEeCCC
Q 003822 646 SPDDHYLLVSAVDNEVRQLLAVDGRVHLN-FGITATGSSQNYTRSYYLNGRDYIVSGSCDE 705 (793)
Q Consensus 646 Spdg~~Lasgs~Dg~I~IwDl~tg~~~~~-l~~~~~~~~~v~s~afspdg~~~L~Sgs~Dg 705 (793)
. +|..+...-..+.|....+..+..+.. -.........+..++..|||..|+++...||
T Consensus 271 ~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td~~~g 330 (347)
T 3das_A 271 A-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTSNTDG 330 (347)
T ss_dssp E-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEECTTSS
T ss_pred E-cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEcCCCC
Confidence 6 355555555555666666554432100 1111122346788899999985555554444
No 343
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=95.94 E-value=0.0064 Score=64.45 Aligned_cols=121 Identities=17% Similarity=0.290 Sum_probs=89.2
Q ss_pred CcceeEEeecCCccccchHHHHHHHHHhccceeEEeccCCchhhHHHHHhhcCCceeeEeecccccccccccccccceee
Q 003822 71 TEIEAVDVRSGTSCMLTGEFALSLMHAIDQKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLNMIGEFKRIH 150 (793)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (793)
..++.+|+.+-.-..+.. + .--.+|+..+|+.+.+..- ..+ ..=-.=+.|+|+.+++..+.-.+.+.+|.
T Consensus 63 ~~L~~L~L~~n~i~~~~~------~-~~l~~L~~L~L~~n~l~~~--~~~-~~l~~L~~L~l~~n~l~~~~~l~~l~~L~ 132 (308)
T 1h6u_A 63 NNLIGLELKDNQITDLAP------L-KNLTKITELELSGNPLKNV--SAI-AGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132 (308)
T ss_dssp TTCCEEECCSSCCCCCGG------G-TTCCSCCEEECCSCCCSCC--GGG-TTCTTCCEEECTTSCCCCCGGGTTCTTCC
T ss_pred CCCCEEEccCCcCCCChh------H-ccCCCCCEEEccCCcCCCc--hhh-cCCCCCCEEECCCCCCCCchhhcCCCCCC
Confidence 466777774432222222 1 1236899999999877542 111 11124588999999999998899999999
Q ss_pred EEeeccccccccccccccccccccceeccccccchhhhHHHHHHhcCCcccceeccee
Q 003822 151 TLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELRFQNW 208 (793)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (793)
+|+|.++ .++.+.. |..||+|+.|++...++..+ ..+.+|++|++|.+..|
T Consensus 133 ~L~l~~n-~l~~~~~--l~~l~~L~~L~l~~n~l~~~----~~l~~l~~L~~L~l~~n 183 (308)
T 1h6u_A 133 VLYLDLN-QITNISP--LAGLTNLQYLSIGNAQVSDL----TPLANLSKLTTLKADDN 183 (308)
T ss_dssp EEECCSS-CCCCCGG--GGGCTTCCEEECCSSCCCCC----GGGTTCTTCCEEECCSS
T ss_pred EEECCCC-ccCcCcc--ccCCCCccEEEccCCcCCCC----hhhcCCCCCCEEECCCC
Confidence 9999965 7888876 99999999999999888764 23899999999998654
No 344
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=95.92 E-value=0.0049 Score=66.00 Aligned_cols=103 Identities=12% Similarity=0.214 Sum_probs=78.6
Q ss_pred ccceeEEeccCCchhhHHHHHhhcCCceeeEeecccccccccccccccceeeEEeeccccccccccccccccccccceec
Q 003822 99 DQKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLS 178 (793)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (793)
..+|+..+|.++.+..--- ...--+=+.|+|+.+++..+.-.+.+++|.+|+|.++ .++.+ ..|..+|+|..|.
T Consensus 220 ~~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n-~l~~~--~~~~~l~~L~~L~ 293 (347)
T 4fmz_A 220 MTRLNSLKIGNNKITDLSP---LANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSN-QISDI--SVLNNLSQLNSLF 293 (347)
T ss_dssp CTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSS-CCCCC--GGGGGCTTCSEEE
T ss_pred CCcCCEEEccCCccCCCcc---hhcCCCCCEEECCCCccCCChhHhcCCCcCEEEccCC-ccCCC--hhhcCCCCCCEEE
Confidence 4689999998886653221 1222234788999999999888889999999999976 78887 4588999999999
Q ss_pred cccccchhhhHHHHHHhcCCcccceecceee
Q 003822 179 MCETRVGNLWTTIAALSKLPSLAELRFQNWL 209 (793)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (793)
+-..++... ...++.++|+|++|.++.|-
T Consensus 294 L~~n~l~~~--~~~~l~~l~~L~~L~L~~n~ 322 (347)
T 4fmz_A 294 LNNNQLGNE--DMEVIGGLTNLTTLFLSQNH 322 (347)
T ss_dssp CCSSCCCGG--GHHHHHTCTTCSEEECCSSS
T ss_pred CcCCcCCCc--ChhHhhccccCCEEEccCCc
Confidence 888877654 33668889999999988763
No 345
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=95.92 E-value=0.0024 Score=64.31 Aligned_cols=104 Identities=13% Similarity=0.188 Sum_probs=61.0
Q ss_pred cceeEEeccCCchhhHHHHHhhcCCceeeEeeccccccccc--ccccccceeeEEeecccccccccccccccccccccee
Q 003822 100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKL--NMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICL 177 (793)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (793)
..|+.++|+++.+..-. .+.+..=-.=+.|+|+.+++..+ +..+...+|.+|+|.+ ..|+.++...|..||+|+.|
T Consensus 32 ~~l~~L~l~~n~i~~i~-~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~f~~l~~L~~L 109 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIP-PGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG-NKITELPKSLFEGLFSLQLL 109 (220)
T ss_dssp TTCCEEECCSSCCCEEC-TTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS-SCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCEEECCCCcCCCcC-HhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC-CcCCccCHhHccCCCCCCEE
Confidence 35666666665543210 00000001235677777777666 4456667777777773 46777777777777777777
Q ss_pred ccccccchhhhHHHHHHhcCCcccceecce
Q 003822 178 SMCETRVGNLWTTIAALSKLPSLAELRFQN 207 (793)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (793)
.+-..++..+= ..++..|++|++|.+..
T Consensus 110 ~L~~N~l~~~~--~~~~~~l~~L~~L~L~~ 137 (220)
T 2v9t_B 110 LLNANKINCLR--VDAFQDLHNLNLLSLYD 137 (220)
T ss_dssp ECCSSCCCCCC--TTTTTTCTTCCEEECCS
T ss_pred ECCCCCCCEeC--HHHcCCCCCCCEEECCC
Confidence 77766665431 23566777777776654
No 346
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=95.91 E-value=0.0028 Score=65.65 Aligned_cols=105 Identities=18% Similarity=0.276 Sum_probs=79.3
Q ss_pred cceeEEeccCCchhhHHHHHhhcCCceeeEeeccccccccccc--ccccceeeEEeecccccccccccccccccccccee
Q 003822 100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLNM--IGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICL 177 (793)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (793)
.+|+.++|.++.+..-- ...+..=-+=+.|+|+.+++..+.. .+.+.+|.+|+|.++ .|+.++...|..||+|..|
T Consensus 85 ~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L 162 (270)
T 2o6q_A 85 KNLETLWVTDNKLQALP-IGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN-ELQSLPKGVFDKLTSLKEL 162 (270)
T ss_dssp TTCCEEECCSSCCCCCC-TTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred CCCCEEECCCCcCCcCC-HhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCC-cCCccCHhHccCCccccee
Confidence 57999999988765311 1111222245789999999888764 578899999999965 7999999999999999999
Q ss_pred ccccccchhhhHHHHHHhcCCcccceeccee
Q 003822 178 SMCETRVGNLWTTIAALSKLPSLAELRFQNW 208 (793)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (793)
.+-..++..+ ...++.+|++|++|.+..+
T Consensus 163 ~L~~n~l~~~--~~~~~~~l~~L~~L~L~~N 191 (270)
T 2o6q_A 163 RLYNNQLKRV--PEGAFDKLTELKTLKLDNN 191 (270)
T ss_dssp ECCSSCCSCC--CTTTTTTCTTCCEEECCSS
T ss_pred EecCCcCcEe--ChhHhccCCCcCEEECCCC
Confidence 9888777653 2245788999999998764
No 347
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=95.88 E-value=0.021 Score=61.81 Aligned_cols=107 Identities=18% Similarity=0.244 Sum_probs=49.1
Q ss_pred ceeEEeccCCchhhHHHHHhhc---C-CceeeEeeccccccccccc------cccc-ceeeEEeeccccccccccccccc
Q 003822 101 KLRVVDLHDSSFGKDFIRNLSQ---R-GLMCEVLNLRSSRFRKLNM------IGEF-KRIHTLNLDYSTSLTSFKEDCFS 169 (793)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~------~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 169 (793)
+|+..+|.++.++......+.+ . .-+=+.|+|+.+++..... ...+ .+|.+|+|.++. |+......|.
T Consensus 52 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~ 130 (362)
T 3goz_A 52 SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFK 130 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHH
T ss_pred ceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHH
Confidence 5666666665555443333332 1 1223455665555544321 1122 456666665433 4544443322
Q ss_pred ----cc-cccceeccccccchh--hhHHHHHHhcCC-cccceeccee
Q 003822 170 ----CM-PNLICLSMCETRVGN--LWTTIAALSKLP-SLAELRFQNW 208 (793)
Q Consensus 170 ----~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~ 208 (793)
.+ ++|+.|++.+.++.. .-....+|.++| +|++|....|
T Consensus 131 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n 177 (362)
T 3goz_A 131 QAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGN 177 (362)
T ss_dssp HHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTS
T ss_pred HHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCC
Confidence 22 356666555555442 112234445555 5666655543
No 348
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=95.87 E-value=0.0028 Score=66.08 Aligned_cols=106 Identities=16% Similarity=0.140 Sum_probs=75.7
Q ss_pred cceeEEeccCCchhhHHHHHhhcCCceeeEeecccccccccc--cccccceeeEEeecccccccccccccccccccccee
Q 003822 100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLN--MIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICL 177 (793)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (793)
.+|+.++|+++.+..-- .+.+..=-.=+.|+|+.+.+..+. ..+.+.+|++|+|.++..++.+....|..||+|+.|
T Consensus 32 ~~l~~L~l~~n~i~~~~-~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L 110 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVP-AASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110 (285)
T ss_dssp TTCSEEECTTSCCCEEC-TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred CCceEEEeeCCcCCccC-HHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence 47778888777654311 011111123478888888887763 466788899999998777899988899999999999
Q ss_pred ccccccchhhhHHHHHHhcCCcccceeccee
Q 003822 178 SMCETRVGNLWTTIAALSKLPSLAELRFQNW 208 (793)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (793)
.+-..++..+- ..++.++++|++|.+..+
T Consensus 111 ~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n 139 (285)
T 1ozn_A 111 HLDRCGLQELG--PGLFRGLAALQYLYLQDN 139 (285)
T ss_dssp ECTTSCCCCCC--TTTTTTCTTCCEEECCSS
T ss_pred ECCCCcCCEEC--HhHhhCCcCCCEEECCCC
Confidence 88888776532 245788899999988764
No 349
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=95.86 E-value=0.0034 Score=60.84 Aligned_cols=78 Identities=19% Similarity=0.335 Sum_probs=57.0
Q ss_pred eeEeecccccccccc--cccccceeeEEeeccccccccccccccccccccceeccccccchhhhHHHHHHhcCCccccee
Q 003822 127 CEVLNLRSSRFRKLN--MIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELR 204 (793)
Q Consensus 127 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (793)
=+.|+|+.+++..+. ..+.+.+|++|+|.++ .|+.++.+-|.-||+|+.|++=..++..+ ...++.+|++|++|.
T Consensus 35 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~l~~l--~~~~~~~l~~L~~L~ 111 (174)
T 2r9u_A 35 KQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLNDNHLKSI--PRGAFDNLKSLTHIY 111 (174)
T ss_dssp CSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCC--CTTTTTTCTTCSEEE
T ss_pred CcEEEeCCCCccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCCCcccee--CHHHhccccCCCEEE
Confidence 367888888887773 4677788888888854 78888888888888888888777666543 123477788888887
Q ss_pred cce
Q 003822 205 FQN 207 (793)
Q Consensus 205 ~~~ 207 (793)
+..
T Consensus 112 L~~ 114 (174)
T 2r9u_A 112 LYN 114 (174)
T ss_dssp CCS
T ss_pred eCC
Confidence 754
No 350
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=95.82 E-value=0.0029 Score=66.57 Aligned_cols=77 Identities=22% Similarity=0.302 Sum_probs=38.6
Q ss_pred eEeecccccccccc--cccccceeeEEeeccccccccccccccccccccceeccccccchhhhHHHHHHhcCCcccceec
Q 003822 128 EVLNLRSSRFRKLN--MIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELRF 205 (793)
Q Consensus 128 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (793)
+.|+|+.+++..+. ..+.+.+|.+|+|.. ..|+.++.+-|..|++|+.|++-..++..+= ..++.+|++|++|.+
T Consensus 103 ~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~--~~~~~~l~~L~~L~L 179 (290)
T 1p9a_G 103 TVLDVSFNRLTSLPLGALRGLGELQELYLKG-NELKTLPPGLLTPTPKLEKLSLANNNLTELP--AGLLNGLENLDTLLL 179 (290)
T ss_dssp CEEECCSSCCCCCCSSTTTTCTTCCEEECTT-SCCCCCCTTTTTTCTTCCEEECTTSCCSCCC--TTTTTTCTTCCEEEC
T ss_pred CEEECCCCcCcccCHHHHcCCCCCCEEECCC-CCCCccChhhcccccCCCEEECCCCcCCccC--HHHhcCcCCCCEEEC
Confidence 45555555555552 234455555555553 3455555555555555555555554444321 123445555555555
Q ss_pred ce
Q 003822 206 QN 207 (793)
Q Consensus 206 ~~ 207 (793)
+.
T Consensus 180 ~~ 181 (290)
T 1p9a_G 180 QE 181 (290)
T ss_dssp CS
T ss_pred CC
Confidence 43
No 351
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=95.80 E-value=0.97 Score=47.21 Aligned_cols=229 Identities=9% Similarity=0.034 Sum_probs=111.8
Q ss_pred CEEEEEeCCCeEEEEECCCCeEEEEEeccC-CCCCEEEEEEeeCCCCEEEEEEc----CC-------cEEEEEcCCCCCc
Q 003822 467 CLMVFGTLDGEIVVVNHENENIVSYIPSFG-AMNSVLGLCWLKKYPSKLIAGSD----NG-------SLKLYDIRHMPPS 534 (793)
Q Consensus 467 ~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~-h~~~V~sv~fs~~~g~~Lasgs~----Dg-------tV~vWDl~~~~~~ 534 (793)
.+++.|+. .+.+||..+++... ..... ....-.+++. .++..++.|+. ++ .+.+||..+.+-
T Consensus 17 ~i~~~GG~--~~~~yd~~~~~W~~-~~~~~~~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W- 90 (318)
T 2woz_A 17 LILLVNDT--AAVAYDPMENECYL-TALAEQIPRNHSSIVT--QQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEW- 90 (318)
T ss_dssp EEEEECSS--EEEEEETTTTEEEE-EEECTTSCSSEEEEEC--SSSCEEEEESSCC-------CCCBEEEEEETTTTEE-
T ss_pred hhhhcccc--ceEEECCCCCceec-ccCCccCCccceEEEE--ECCEEEEECCcccCccccCCCccccEEEEeCCCCcE-
Confidence 34555553 48899999887654 22211 1122233332 56778888873 12 166777766432
Q ss_pred ccccccCCceeEecCCCCeEEEEEccCCCEEEEEECC-------CcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCCCc
Q 003822 535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYS-------KNIALYDINSGRRLQVFADMHKEHINVVKFSNHSPS 607 (793)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~D-------g~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg~~ 607 (793)
......... . .....+.+ .+..++.||.+ ..+.+||..+.+-...-.-.....-.+++. .++ .
T Consensus 91 -~~~~~~p~~-r----~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~-~ 160 (318)
T 2woz_A 91 -VGLPPLPSA-R----CLFGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS-HNG-M 160 (318)
T ss_dssp -EECSCBSSC-B----CSCEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE-ETT-E
T ss_pred -EECCCCCcc-c----cccceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE-ECC-E
Confidence 111110000 0 11122222 55666667643 358889998765443211000000012222 245 6
Q ss_pred EEEEEeCC------CeEEEEECCCCCccceEEccCCCCeEEEEEecCCCEEEEEeCC-----CeEEEEEcCCCcEEEEEe
Q 003822 608 IFATSSFD------QDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLVSAVD-----NEVRQLLAVDGRVHLNFG 676 (793)
Q Consensus 608 ~LaTgs~D------g~IrIWDlrt~~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs~D-----g~I~IwDl~tg~~~~~l~ 676 (793)
+++.|+.+ ..+.+||+.+.....+...+......+++. -+++.++.|+.+ ..+.+||..+.+... +.
T Consensus 161 iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~-~~ 238 (318)
T 2woz_A 161 IYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEV-MT 238 (318)
T ss_dssp EEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEEEEEETTEEEEEEEEEETTTCCEEE-CC
T ss_pred EEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEE-ECCEEEEEcCcCCCCccceEEEEECCCCeEEE-CC
Confidence 77777642 358999998864443322222211112222 256777777643 357789988876532 21
Q ss_pred eecCCCCCcEEEEEeeCCCeEEEEEeCC--------------CcEEEEEEcCCCc
Q 003822 677 ITATGSSQNYTRSYYLNGRDYIVSGSCD--------------EHVVRICCAQTGR 717 (793)
Q Consensus 677 ~~~~~~~~v~s~afspdg~~~L~Sgs~D--------------g~II~IWDv~tg~ 717 (793)
..+..... ..+...++. +++.|+.+ ..+ .+||..+.+
T Consensus 239 ~~p~~r~~--~~~~~~~~~-i~v~GG~~~~~~~~~~~~~~~~~~v-~~yd~~~~~ 289 (318)
T 2woz_A 239 EFPQERSS--ISLVSLAGS-LYAIGGFAMIQLESKEFAPTEVNDI-WKYEDDKKE 289 (318)
T ss_dssp CCSSCCBS--CEEEEETTE-EEEECCBCCBC----CCBCCBCCCE-EEEETTTTE
T ss_pred CCCCcccc--eEEEEECCE-EEEECCeeccCCCCceeccceeeeE-EEEeCCCCE
Confidence 11111111 122234555 66666653 245 777877654
No 352
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=95.79 E-value=0.0064 Score=56.69 Aligned_cols=77 Identities=26% Similarity=0.295 Sum_probs=62.8
Q ss_pred eeEeeccccccc--ccc-cccccceeeEEeeccccccccccccccccccccceeccccccchhhhHHHHHHhcCCcccce
Q 003822 127 CEVLNLRSSRFR--KLN-MIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAEL 203 (793)
Q Consensus 127 ~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (793)
=+.|+|+.+++. .+. ..+.+.+|.+|+|.++ .++.+ ..|..||+|+.|.+-..++... .-..+.++++|++|
T Consensus 19 l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~--~~~~~l~~L~~L~Ls~n~i~~~--~~~~~~~l~~L~~L 93 (149)
T 2je0_A 19 VKELVLDNSRSNEGKLEGLTDEFEELEFLSTINV-GLTSI--ANLPKLNKLKKLELSDNRVSGG--LEVLAEKCPNLTHL 93 (149)
T ss_dssp CSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTS-CCCCC--TTCCCCTTCCEEECCSSCCCSC--THHHHHHCTTCCEE
T ss_pred CeEEEccCCcCChhHHHHHHhhcCCCcEEECcCC-CCCCc--hhhhcCCCCCEEECCCCcccch--HHHHhhhCCCCCEE
Confidence 478999998887 443 4588999999999966 78888 8899999999999999988873 23456679999999
Q ss_pred eccee
Q 003822 204 RFQNW 208 (793)
Q Consensus 204 ~~~~~ 208 (793)
.+..|
T Consensus 94 ~ls~N 98 (149)
T 2je0_A 94 NLSGN 98 (149)
T ss_dssp ECTTS
T ss_pred ECCCC
Confidence 98764
No 353
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=95.77 E-value=0.0033 Score=60.63 Aligned_cols=105 Identities=13% Similarity=0.204 Sum_probs=60.3
Q ss_pred cceeEEeccCCchhhHHHHHhhcCCceeeEeeccccccccccc--ccccceeeEEeecccccccccccccccccccccee
Q 003822 100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLNM--IGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICL 177 (793)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (793)
.+|+.++|.++.+.. .....+..=-.=+.|+|+.+++..+.. .+.+.+|.+|+|.+ ..|+.+...-|.-||+|..|
T Consensus 28 ~~l~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L 105 (177)
T 2o6r_A 28 SSATRLELESNKLQS-LPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE-NKLQSLPNGVFDKLTQLKEL 105 (177)
T ss_dssp TTCSEEECCSSCCCC-CCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEE
T ss_pred CCCcEEEeCCCcccE-eCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC-CCccccCHHHhhCCcccCEE
Confidence 356666666655432 111111111134566776666666543 45667777777774 46777777777777777777
Q ss_pred ccccccchhhhHHHHHHhcCCcccceeccee
Q 003822 178 SMCETRVGNLWTTIAALSKLPSLAELRFQNW 208 (793)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (793)
++-..++..+= ..++.++++|++|.++..
T Consensus 106 ~l~~N~l~~~~--~~~~~~l~~L~~L~l~~N 134 (177)
T 2o6r_A 106 ALDTNQLKSVP--DGIFDRLTSLQKIWLHTN 134 (177)
T ss_dssp ECCSSCCSCCC--TTTTTTCTTCCEEECCSS
T ss_pred ECcCCcceEeC--HHHhcCCcccCEEEecCC
Confidence 77666655331 123566777777776643
No 354
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=95.76 E-value=0.0062 Score=65.20 Aligned_cols=100 Identities=11% Similarity=0.172 Sum_probs=70.7
Q ss_pred ccceeEEeccCCchhhHHHHHhhcCCceeeEeecccccccccccccccceeeEEeeccccccccccccccccccccceec
Q 003822 99 DQKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLS 178 (793)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (793)
-.+|+.++|.++.+..-.- ...--.=+.|+++.+.+..+...+.+.+|++|+|..+ .++.+.. |..+|+|+.|.
T Consensus 176 l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n-~l~~~~~--~~~l~~L~~L~ 249 (347)
T 4fmz_A 176 LTDLYSLSLNYNQIEDISP---LASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNN-KITDLSP--LANLSQLTWLE 249 (347)
T ss_dssp CTTCSEEECTTSCCCCCGG---GGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEE
T ss_pred CCCCCEEEccCCccccccc---ccCCCccceeecccCCCCCCchhhcCCcCCEEEccCC-ccCCCcc--hhcCCCCCEEE
Confidence 3678888888876643211 1112234677888888877777778888888888854 5777665 88888888888
Q ss_pred cccccchhhhHHHHHHhcCCcccceeccee
Q 003822 179 MCETRVGNLWTTIAALSKLPSLAELRFQNW 208 (793)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (793)
+...++..+ .++..+++|++|.+..|
T Consensus 250 l~~n~l~~~----~~~~~l~~L~~L~l~~n 275 (347)
T 4fmz_A 250 IGTNQISDI----NAVKDLTKLKMLNVGSN 275 (347)
T ss_dssp CCSSCCCCC----GGGTTCTTCCEEECCSS
T ss_pred CCCCccCCC----hhHhcCCCcCEEEccCC
Confidence 877777664 46788888888887765
No 355
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=95.76 E-value=0.0033 Score=66.85 Aligned_cols=74 Identities=15% Similarity=0.303 Sum_probs=34.4
Q ss_pred eEeeccccccccccc---ccccceeeEEeeccccccccccccccccccccceeccccccchhhhHHHHHHhcCCccccee
Q 003822 128 EVLNLRSSRFRKLNM---IGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELR 204 (793)
Q Consensus 128 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (793)
+.|+|+.+++..+.. .+.+.+|.+|+|+++ .|+.+....| +|+|..|.+...++..+ ...+..+++|++|.
T Consensus 147 ~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~--l~~L~~L~Ls~N~l~~l---~~~~~~l~~L~~L~ 220 (317)
T 3o53_A 147 QYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN-FIYDVKGQVV--FAKLKTLDLSSNKLAFM---GPEFQSAAGVTWIS 220 (317)
T ss_dssp EEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS-CCCEEECCCC--CTTCCEEECCSSCCCEE---CGGGGGGTTCSEEE
T ss_pred CEEECCCCCCCcccHHHHhhccCcCCEEECCCC-cCcccccccc--cccCCEEECCCCcCCcc---hhhhcccCcccEEE
Confidence 455555555554432 123355555555533 3444433332 55555555555444432 11244455555555
Q ss_pred cce
Q 003822 205 FQN 207 (793)
Q Consensus 205 ~~~ 207 (793)
+..
T Consensus 221 L~~ 223 (317)
T 3o53_A 221 LRN 223 (317)
T ss_dssp CTT
T ss_pred CcC
Confidence 544
No 356
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=95.75 E-value=0.004 Score=65.97 Aligned_cols=124 Identities=14% Similarity=0.179 Sum_probs=63.3
Q ss_pred cccchHHHHHHHHHhc-cceeEEeccCCchhhHHHHHhh-cCCceeeEeeccccccccc------ccccccceeeEEeec
Q 003822 84 CMLTGEFALSLMHAID-QKLRVVDLHDSSFGKDFIRNLS-QRGLMCEVLNLRSSRFRKL------NMIGEFKRIHTLNLD 155 (793)
Q Consensus 84 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~ 155 (793)
+.+.+.....+.+.++ .+|+.++|.++.+....-..++ ..--+=+.|+|+.+++... .-.+.+++|.+|+|.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls 153 (310)
T 4glp_A 74 AQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIA 153 (310)
T ss_dssp CCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEE
T ss_pred CcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEee
Confidence 3445555555555443 3477777766665543332222 2222345666666666541 111245666666666
Q ss_pred cccccccccccccccccccceeccccccchhh--hHHHHHHhcCCcccceeccee
Q 003822 156 YSTSLTSFKEDCFSCMPNLICLSMCETRVGNL--WTTIAALSKLPSLAELRFQNW 208 (793)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 208 (793)
...|+.+...-|+.||+|+.|.+-..++... -.....+.++|+|++|....|
T Consensus 154 -~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N 207 (310)
T 4glp_A 154 -QAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNT 207 (310)
T ss_dssp -CCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSS
T ss_pred -CCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCC
Confidence 3355666666666666666666555543211 000111246666666666543
No 357
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=95.75 E-value=2.8 Score=45.16 Aligned_cols=212 Identities=11% Similarity=0.156 Sum_probs=112.7
Q ss_pred CCCeEEEEECCC--CeEEEEEeccC-----CCCCEEEEEEeeC-CCC-EEEEEE-c--CCcEEEEEcCCCCCcccccccC
Q 003822 474 LDGEIVVVNHEN--ENIVSYIPSFG-----AMNSVLGLCWLKK-YPS-KLIAGS-D--NGSLKLYDIRHMPPSIRGMHYG 541 (793)
Q Consensus 474 ~DG~I~VWd~~t--~~~i~~l~~~~-----h~~~V~sv~fs~~-~g~-~Lasgs-~--DgtV~vWDl~~~~~~~~~~~~~ 541 (793)
.+|.|.++|.++ ++. ..+...+ ..-....+.+.+. ++. +|+++. . +.+|.+|+++..........
T Consensus 81 ~~G~I~~~d~~~~~~~~-~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~-- 157 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAV-SELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLK-- 157 (355)
T ss_dssp -CCEEEEEETTSSSCCE-EECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEE--
T ss_pred CCCeEEEEecCCCCCce-EEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEe--
Confidence 689999999873 332 2333323 2346777777542 343 444443 2 56888988876533221111
Q ss_pred CceeEecCCCCeEEEEEccCCCEEEEEE---C--------------CCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCC
Q 003822 542 AGTVTFDEFDQLTSVHVNSMDELFLASG---Y--------------SKNIALYDINSGRRLQVFADMHKEHINVVKFSNH 604 (793)
Q Consensus 542 ~~~~~~~~~~~V~sv~~s~~~~~lla~g---~--------------Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspd 604 (793)
.+.-......+.+.+.+++..+++.. . .|.|..+|. ++. ..+.. .-...+.++|+|+
T Consensus 158 --~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~~-~~~~~-~l~~pNGia~spD 231 (355)
T 3sre_A 158 --TIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--NDV-RVVAE-GFDFANGINISPD 231 (355)
T ss_dssp --EECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TCC-EEEEE-EESSEEEEEECTT
T ss_pred --ccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--CeE-EEeec-CCcccCcceECCC
Confidence 11111225578999987766555432 1 144555554 332 22221 3346789999999
Q ss_pred CCcEEEEEeCCCeEEEEECCC-CCccceEEccCCCCeEEEEEec-CCCEEEEEeCC-CeEEEEEcC--CCcEEEEEeeec
Q 003822 605 SPSIFATSSFDQDVKLWDLRQ-KPIQPCYTASSSKGNVMVCFSP-DDHYLLVSAVD-NEVRQLLAV--DGRVHLNFGITA 679 (793)
Q Consensus 605 g~~~LaTgs~Dg~IrIWDlrt-~~~~~~~~l~~~~~~vsv~fSp-dg~~Lasgs~D-g~I~IwDl~--tg~~~~~l~~~~ 679 (793)
+..++++-+..+.|..||+.. +.......+.....+-.++..+ +|++.+++..+ +.|..|+.. .+..+..+....
T Consensus 232 g~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~~~g~PDGi~vD~e~G~lwva~~~~g~~v~~~~P~~~~~s~v~rI~~~~ 311 (355)
T 3sre_A 232 GKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGCHPNGMRIFFYDAENPPGSEVLRIQDIL 311 (355)
T ss_dssp SSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEEESCHHHHHSCCTTSCCCEEEEEEECTT
T ss_pred CCEEEEEeCCCCeEEEEEECCCCcEecCEEEeCCCCCceEEEeCCCCcEEEEecCCceEEEEECCCCCCCCEEEEEEccC
Confidence 955556666688999999864 2222211222222233489999 59977766534 344445543 244444443211
Q ss_pred CCCCCcEEEEEeeCCC
Q 003822 680 TGSSQNYTRSYYLNGR 695 (793)
Q Consensus 680 ~~~~~v~s~afspdg~ 695 (793)
.........|..+|+
T Consensus 312 -~~~~~v~~v~~ddG~ 326 (355)
T 3sre_A 312 -SEEPKVTVVYAENGT 326 (355)
T ss_dssp -SSSCEEEEEEEECSS
T ss_pred -CCCcEEEEEEEcCCC
Confidence 122334444555554
No 358
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=95.74 E-value=0.002 Score=63.30 Aligned_cols=79 Identities=16% Similarity=0.281 Sum_probs=51.5
Q ss_pred eeeEeeccccccccccc---ccccceeeEEeeccccccccccccccccccccceeccccccchhhhHHHHHHhcCCcccc
Q 003822 126 MCEVLNLRSSRFRKLNM---IGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAE 202 (793)
Q Consensus 126 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (793)
.-+.|+|+.+++..+.. .+.+.+|++|+|++ ..|+.+..+.|.-|++|+.|.+-..++..+= ..++.+|++|++
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~--~~~~~~l~~L~~ 106 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKR-NQLTGIEPNAFEGASHIQELQLGENKIKEIS--NKMFLGLHQLKT 106 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCS-SCCCCBCTTTTTTCTTCCEEECCSCCCCEEC--SSSSTTCTTCCE
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCC-CCCCCcCHhHcCCcccCCEEECCCCcCCccC--HHHhcCCCCCCE
Confidence 44667777777766653 56667777777774 4677777777777777777777666655432 123566777777
Q ss_pred eecce
Q 003822 203 LRFQN 207 (793)
Q Consensus 203 ~~~~~ 207 (793)
|.++.
T Consensus 107 L~L~~ 111 (192)
T 1w8a_A 107 LNLYD 111 (192)
T ss_dssp EECCS
T ss_pred EECCC
Confidence 76654
No 359
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=95.73 E-value=0.0025 Score=68.41 Aligned_cols=130 Identities=20% Similarity=0.221 Sum_probs=77.6
Q ss_pred cCCCcceeEEeecCCccccchHHHHHHHHHhccceeEEeccCCchhhHHHHHhhcCCceeeEeecccccccccc-ccccc
Q 003822 68 IGATEIEAVDVRSGTSCMLTGEFALSLMHAIDQKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLN-MIGEF 146 (793)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 146 (793)
.....+..+|+.+..-..+..+.. . =.+||..+|.++.+. .+-..+ ..=-.=+.|+|+.+++..+- -.+.+
T Consensus 78 ~~~~~l~~L~L~~n~l~~lp~~l~-----~-l~~L~~L~L~~n~l~-~lp~~~-~~l~~L~~L~Ls~n~l~~lp~~l~~l 149 (328)
T 4fcg_A 78 ATQPGRVALELRSVPLPQFPDQAF-----R-LSHLQHMTIDAAGLM-ELPDTM-QQFAGLETLTLARNPLRALPASIASL 149 (328)
T ss_dssp HTSTTCCEEEEESSCCSSCCSCGG-----G-GTTCSEEEEESSCCC-CCCSCG-GGGTTCSEEEEESCCCCCCCGGGGGC
T ss_pred ccccceeEEEccCCCchhcChhhh-----h-CCCCCEEECCCCCcc-chhHHH-hccCCCCEEECCCCccccCcHHHhcC
Confidence 344666777774433223322210 1 236777777777655 211111 11112467788777777553 35667
Q ss_pred ceeeEEeecccccccccccc--------ccccccccceeccccccchhhhHHHHHHhcCCcccceeccee
Q 003822 147 KRIHTLNLDYSTSLTSFKED--------CFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELRFQNW 208 (793)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (793)
.+|.+|+|.+|.-++.++.. .|..||+|..|.+...++..+ ..++.+|++|++|.+..|
T Consensus 150 ~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l---p~~l~~l~~L~~L~L~~N 216 (328)
T 4fcg_A 150 NRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSL---PASIANLQNLKSLKIRNS 216 (328)
T ss_dssp TTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCC---CGGGGGCTTCCEEEEESS
T ss_pred cCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcc---hHhhcCCCCCCEEEccCC
Confidence 77888888877777777653 356688888888877776633 244777888888877654
No 360
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=95.71 E-value=0.36 Score=60.58 Aligned_cols=241 Identities=9% Similarity=0.102 Sum_probs=139.8
Q ss_pred EEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCccccc
Q 003822 459 FEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGM 538 (793)
Q Consensus 459 vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~~~~ 538 (793)
.-.|| ..+++|.-. ..++.|+|+++.+.+..... ...|.-=.|. +.+.|+-.+ +..|..|++.....+....
T Consensus 71 AIMnP-~~~iiALra-g~~lQiFnl~~k~klks~~~---~e~VvfWkWi--s~~~l~lVT-~~aVyHW~~~~~s~P~k~f 142 (1630)
T 1xi4_A 71 AIMNP-ASKVIALKA-GKTLQIFNIEMKSKMKAHTM---TDDVTFWKWI--SLNTVALVT-DNAVYHWSMEGESQPVKMF 142 (1630)
T ss_pred hccCC-CcceEEEec-CCeEEEeehHHhhhhccccc---CCCceEEEec--CCCeeEEEc-CCeEEEeccCCCCccHHHH
Confidence 44678 667777665 77899999998877766643 3457666775 455665554 3589999997633332222
Q ss_pred ccCCceeEecCCCCeEEEEEccCCCEEEEEEC-------CCcEEEEECCCCcEEEEEcccCCCCeEEEEEc--CCCCcEE
Q 003822 539 HYGAGTVTFDEFDQLTSVHVNSMDELFLASGY-------SKNIALYDINSGRRLQVFADMHKEHINVVKFS--NHSPSIF 609 (793)
Q Consensus 539 ~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~-------Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fs--pdg~~~L 609 (793)
..+... . ..+|..-..+++...++..|- .|.+.+|..+.+. .+.+. ||.+....+... +....++
T Consensus 143 dR~~~L---~-~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~-sQ~ie-gha~~F~~~~~~~~~~~~~l~ 216 (1630)
T 1xi4_A 143 DRHSSL---A-GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIE-GHAASFAQFKMEGNAEESTLF 216 (1630)
T ss_pred hcchhc---c-cCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc-chhhh-HhHhhhheeccCCCCCCceEE
Confidence 212111 1 245667777777777776651 3778888877432 23333 565544333332 1111333
Q ss_pred EEEeC---CCeEEEEECCCC-CccceE-------Ecc---CCCCeEEEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEE
Q 003822 610 ATSSF---DQDVKLWDLRQK-PIQPCY-------TAS---SSKGNVMVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNF 675 (793)
Q Consensus 610 aTgs~---Dg~IrIWDlrt~-~~~~~~-------~l~---~~~~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l 675 (793)
+.+.. .+.++|-++... ...+.+ .++ ..+-++++..++.-..+...+.-|.+++||+.||.++..-
T Consensus 217 ~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ 296 (1630)
T 1xi4_A 217 CFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMN 296 (1630)
T ss_pred EEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhc
Confidence 33332 267888888543 111111 111 1334567888888888999999999999999999987655
Q ss_pred eeecCCCCCcEEEEEee-CCCeEEEEEeCCCcEEEEEEcCCCcEE
Q 003822 676 GITATGSSQNYTRSYYL-NGRDYIVSGSCDEHVVRICCAQTGRRL 719 (793)
Q Consensus 676 ~~~~~~~~~v~s~afsp-dg~~~L~Sgs~Dg~II~IWDv~tg~~l 719 (793)
.+ ....+...+... .++ ++.....|.| .--.+.....+
T Consensus 297 ri---s~~~iF~~~~~~~~~g--~~~vnr~G~v-l~v~v~~~~iv 335 (1630)
T 1xi4_A 297 RI---SGETIFVTAPHEATAG--IIGVNRKGQV-LSVCVEEENII 335 (1630)
T ss_pred cc---cCCceEEeccCCCCCc--eEEEcCCceE-EEEEEccchhh
Confidence 43 223333333332 333 4445566666 33344444443
No 361
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=95.69 E-value=0.0043 Score=59.75 Aligned_cols=77 Identities=25% Similarity=0.401 Sum_probs=53.6
Q ss_pred eEeecccccccccc--cccccceeeEEeeccccccccccccccccccccceeccccccchhhhHHHHHHhcCCcccceec
Q 003822 128 EVLNLRSSRFRKLN--MIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELRF 205 (793)
Q Consensus 128 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (793)
+.|+|+.+++..+. ..+.+.+|.+|+|.+ ..|+.++.+-|..||+|+.|.+-..++..+= ..++.+|++|++|.+
T Consensus 33 ~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 33 QVLYLYDNQITKLEPGVFDRLTQLTRLDLDN-NQLTVLPAGVFDKLTQLTQLSLNDNQLKSIP--RGAFDNLKSLTHIWL 109 (170)
T ss_dssp SEEECCSSCCCCCCTTTTTTCTTCSEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCCCCC--TTTTTTCTTCCEEEC
T ss_pred cEEEcCCCcCCccChhhhcCcccCCEEECCC-CCcCccChhhccCCCCCCEEECCCCccCEeC--HHHhcCCCCCCEEEe
Confidence 66777777777763 356677788888874 4677888777888888888877777665431 134677777777776
Q ss_pred ce
Q 003822 206 QN 207 (793)
Q Consensus 206 ~~ 207 (793)
..
T Consensus 110 ~~ 111 (170)
T 3g39_A 110 LN 111 (170)
T ss_dssp CS
T ss_pred CC
Confidence 53
No 362
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=95.67 E-value=0.92 Score=46.98 Aligned_cols=192 Identities=10% Similarity=0.083 Sum_probs=101.4
Q ss_pred CCCEEEEEeCC----CeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcC------CcEEEEEcCCCCCc
Q 003822 465 ISCLMVFGTLD----GEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDN------GSLKLYDIRHMPPS 534 (793)
Q Consensus 465 d~~~Lasgs~D----G~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~D------gtV~vWDl~~~~~~ 534 (793)
++.+++.|+.+ ..+.+||..+++....-...........+. .++.+++.|+.+ ..+.+||..+.+-.
T Consensus 55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~---~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~ 131 (306)
T 3ii7_A 55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACA---AEGKIYTSGGSEVGNSALYLFECYDTRTESWH 131 (306)
T ss_dssp TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEE---ETTEEEEECCBBTTBSCCCCEEEEETTTTEEE
T ss_pred CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEE---ECCEEEEECCCCCCCcEeeeEEEEeCCCCceE
Confidence 45688888755 678999999887554333222112222222 256677777765 45888898875421
Q ss_pred ccccccCCceeEecCCCCeEEEEEccCCCEEEEEEC---------CCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCC
Q 003822 535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY---------SKNIALYDINSGRRLQVFADMHKEHINVVKFSNHS 605 (793)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~---------Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg 605 (793)
....... .. .....+.+ .+..++.+|. -..+.+||+.+.+-...-.-.....-.++... ++
T Consensus 132 --~~~~~p~-~r----~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~ 201 (306)
T 3ii7_A 132 --TKPSMLT-QR----CSHGMVEA--NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV-KD 201 (306)
T ss_dssp --EECCCSS-CC----BSCEEEEE--TTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TT
T ss_pred --eCCCCcC-Cc----ceeEEEEE--CCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE-CC
Confidence 1110000 00 11122222 4555555553 34588999998754332110111111122222 44
Q ss_pred CcEEEEEeCC-----CeEEEEECCCCCccceEEccCCCCeEEEEEecCCCEEEEEeCC-----CeEEEEEcCCCcE
Q 003822 606 PSIFATSSFD-----QDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLVSAVD-----NEVRQLLAVDGRV 671 (793)
Q Consensus 606 ~~~LaTgs~D-----g~IrIWDlrt~~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs~D-----g~I~IwDl~tg~~ 671 (793)
.+++.|+.+ ..+.+||+.+.....+..++.......++.. +++.++.|+.+ +.+.+||..+.+.
T Consensus 202 -~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~W 275 (306)
T 3ii7_A 202 -KIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV-GSIVYVLAGFQGVGRLGHILEYNTETDKW 275 (306)
T ss_dssp -EEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE-TTEEEEEECBCSSSBCCEEEEEETTTTEE
T ss_pred -EEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE-CCEEEEEeCcCCCeeeeeEEEEcCCCCeE
Confidence 677777654 3589999988644333222221111122222 67777777744 5688999888754
No 363
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=95.67 E-value=3.4 Score=45.61 Aligned_cols=220 Identities=8% Similarity=0.090 Sum_probs=131.4
Q ss_pred CCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcccccccCCceeEecCCCCeE
Q 003822 475 DGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLT 554 (793)
Q Consensus 475 DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~ 554 (793)
+.+|.|.|+.++..+...+. .....|. + |..+.+|.-. ..++.++|+++... ...+....+|.
T Consensus 47 ~~~vvIiDl~~~~~~~rrpi-~AdsAIM----n-P~~~iiALra-g~~lQiFnle~K~k----------lks~~~~e~Vv 109 (494)
T 1bpo_A 47 QAQVVIIDMNDPSNPIRRPI-SADSAIM----N-PASKVIALKA-GKTLQIFNIEMKSK----------MKAHTMTDDVT 109 (494)
T ss_dssp CCEEEEEETTSTTSCEEEEC-CCSEEEE----C-SSSSCEEEEE-TTEEEEEETTTTEE----------EEEEECSSCCC
T ss_pred CCeEEEEECCCCCcceeccc-ccceeee----C-CCCcEEEEec-CCeEEEEchHHhhh----------hcceecCCCce
Confidence 34799999988655433332 2222332 4 5556666655 67999999998554 12222234555
Q ss_pred EEEEccCCCEEEEEECCCcEEEEECCC-CcEEEEEcccC----CCCeEEEEEcCCCCcEEE-EEe------CCCeEEEEE
Q 003822 555 SVHVNSMDELFLASGYSKNIALYDINS-GRRLQVFADMH----KEHINVVKFSNHSPSIFA-TSS------FDQDVKLWD 622 (793)
Q Consensus 555 sv~~s~~~~~lla~g~Dg~I~IWDl~t-g~~l~~~~~gh----~~~V~sv~fspdg~~~La-Tgs------~Dg~IrIWD 622 (793)
--.|-.+...-++ .+..|+-|++.. ..+++.|.. | ...|..-..+++. ++++ +|- -.|.+.+|.
T Consensus 110 fWkWis~~~l~lV--T~taVyHWsi~~~s~P~kvFdR-~~~L~~~QIInY~~d~~~-kW~~l~GI~~~~~~v~G~mQLYS 185 (494)
T 1bpo_A 110 FWKWISLNTVALV--TDNAVYHWSMEGESQPVKMFDR-HSSLAGCQIINYRTDAKQ-KWLLLTGISAQQNRVVGAMQLYS 185 (494)
T ss_dssp EEEEEETTEEEEE--CSSEEEEEESSSSCCCEEEEEC-CGGGTTCEEEEEEECTTS-SEEEEEEEEEETTEEEEEEEEEE
T ss_pred EEEecCCCeEEEE--cCCeeEEecccCCCCchhheec-chhcccceEEEEEECCCC-CeEEEEeecccCCcccceEEEee
Confidence 5666443333222 467899999974 457777763 3 3456666778887 4544 333 246789999
Q ss_pred CCCCCccceEEccCCCCeEEEEEecCC-----CEEEEEeC---CCeEEEEEcCCC--------cEEEEEeeec-CCCCCc
Q 003822 623 LRQKPIQPCYTASSSKGNVMVCFSPDD-----HYLLVSAV---DNEVRQLLAVDG--------RVHLNFGITA-TGSSQN 685 (793)
Q Consensus 623 lrt~~~~~~~~l~~~~~~vsv~fSpdg-----~~Lasgs~---Dg~I~IwDl~tg--------~~~~~l~~~~-~~~~~v 685 (793)
...+.. ..+.+|.... ..+-.+| ..++-+.. .+.++|.++... +....+.+.+ ...+..
T Consensus 186 ~er~~s---Q~ieGhaa~F-~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFP 261 (494)
T 1bpo_A 186 VDRKVS---QPIEGHAASF-AQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFP 261 (494)
T ss_dssp STTCCE---EEECCSEEEE-EEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCE
T ss_pred cccccc---chheeeeeee-EEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCce
Confidence 887532 3445554333 2222222 12333332 278999988543 1112222222 234556
Q ss_pred EEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEEe
Q 003822 686 YTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRLRD 721 (793)
Q Consensus 686 ~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~~ 721 (793)
..+..++.-+ .+..-+.-|.+ ++||+.||.++..
T Consensus 262 vamqvs~kyg-viyviTK~G~i-~lyDleTgt~i~~ 295 (494)
T 1bpo_A 262 VAMQISEKHD-VVFLITKYGYI-HLYDLETGTCIYM 295 (494)
T ss_dssp EEEEEETTTT-EEEEEETTSEE-EEEETTTCCEEEE
T ss_pred eEEEecccCC-EEEEEecCceE-EEEecccceeeee
Confidence 7777787777 78888899999 9999999999983
No 364
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=95.64 E-value=0.0039 Score=67.27 Aligned_cols=77 Identities=21% Similarity=0.256 Sum_probs=36.5
Q ss_pred eEeeccccccccccc--ccccceeeEEeeccccccccccc-cccccccccceecccccc-chhhhHHHHHHhcCCcccce
Q 003822 128 EVLNLRSSRFRKLNM--IGEFKRIHTLNLDYSTSLTSFKE-DCFSCMPNLICLSMCETR-VGNLWTTIAALSKLPSLAEL 203 (793)
Q Consensus 128 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 203 (793)
+.|+|+.+.+..+.- .+.+.+|.+|+|.+ +.++.++. ..|..||+|..|++-... +..+ ...++.++++|++|
T Consensus 103 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~--~~~~~~~l~~L~~L 179 (353)
T 2z80_A 103 EHLDLSYNYLSNLSSSWFKPLSSLTFLNLLG-NPYKTLGETSLFSHLTKLQILRVGNMDTFTKI--QRKDFAGLTFLEEL 179 (353)
T ss_dssp CEEECCSSCCSSCCHHHHTTCTTCSEEECTT-CCCSSSCSSCSCTTCTTCCEEEEEESSSCCEE--CTTTTTTCCEEEEE
T ss_pred CEEECCCCcCCcCCHhHhCCCccCCEEECCC-CCCcccCchhhhccCCCCcEEECCCCcccccc--CHHHccCCCCCCEE
Confidence 455555555554432 34455555555553 24555555 555555555555543321 1111 01234455555555
Q ss_pred ecce
Q 003822 204 RFQN 207 (793)
Q Consensus 204 ~~~~ 207 (793)
.+..
T Consensus 180 ~l~~ 183 (353)
T 2z80_A 180 EIDA 183 (353)
T ss_dssp EEEE
T ss_pred ECCC
Confidence 5544
No 365
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=95.57 E-value=0.0013 Score=64.90 Aligned_cols=77 Identities=21% Similarity=0.315 Sum_probs=47.1
Q ss_pred eEeecccccccccc-cccccceeeEEeeccccccccccccccccccccceeccccccchhhhHHHHHHhcCCcccceecc
Q 003822 128 EVLNLRSSRFRKLN-MIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELRFQ 206 (793)
Q Consensus 128 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (793)
+.|+|+.+++..+. ..+.+++|.+|+|.++ .|+.++ -|..||+|..|++-..++..+-. ..++.++++|++|.+.
T Consensus 73 ~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N-~l~~l~--~~~~l~~L~~L~l~~N~i~~~~~-~~~l~~l~~L~~L~l~ 148 (198)
T 1ds9_A 73 RILSLGRNLIKKIENLDAVADTLEELWISYN-QIASLS--GIEKLVNLRVLYMSNNKITNWGE-IDKLAALDKLEDLLLA 148 (198)
T ss_dssp CEEEEEEEEECSCSSHHHHHHHCSEEEEEEE-ECCCHH--HHHHHHHSSEEEESEEECCCHHH-HHHHTTTTTCSEEEEC
T ss_pred CEEECCCCCcccccchhhcCCcCCEEECcCC-cCCcCC--ccccCCCCCEEECCCCcCCchhH-HHHHhcCCCCCEEEec
Confidence 55666666666543 2233466777777754 666665 36677777777776666655422 2466777777777766
Q ss_pred ee
Q 003822 207 NW 208 (793)
Q Consensus 207 ~~ 208 (793)
.+
T Consensus 149 ~N 150 (198)
T 1ds9_A 149 GN 150 (198)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 366
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=95.57 E-value=0.019 Score=62.54 Aligned_cols=134 Identities=13% Similarity=0.196 Sum_probs=83.4
Q ss_pred CcceeEEeecCCccccchHHHHHHHH--HhccceeEEeccCCchhhHHHHHhhcC--C----------ceeeEeeccccc
Q 003822 71 TEIEAVDVRSGTSCMLTGEFALSLMH--AIDQKLRVVDLHDSSFGKDFIRNLSQR--G----------LMCEVLNLRSSR 136 (793)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~--~----------~~~~~~~~~~~~ 136 (793)
..+..+|+.+ +.+..+-+..+.. .-+.+|+..+|.++.++......+... . -.=+.|+|+.++
T Consensus 94 ~~L~~L~Ls~---n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~ 170 (386)
T 2ca6_A 94 PKLHTVRLSD---NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR 170 (386)
T ss_dssp TTCCEEECCS---CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred CcccEEECCC---CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence 5677777633 3444433222222 235788888888888875444433321 0 134678888777
Q ss_pred ccccc------cccccceeeEEeecccccccc-----ccccccccccccceeccccccchhh--hHHHHHHhcCCcccce
Q 003822 137 FRKLN------MIGEFKRIHTLNLDYSTSLTS-----FKEDCFSCMPNLICLSMCETRVGNL--WTTIAALSKLPSLAEL 203 (793)
Q Consensus 137 ~~~~~------~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 203 (793)
+..-. ..+.+.+|.+|+|.++ .|+. +-...|..+|+|+.|++...++.+- -....+|.++|+|++|
T Consensus 171 l~~~~~~~l~~~l~~~~~L~~L~L~~n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L 249 (386)
T 2ca6_A 171 LENGSMKEWAKTFQSHRLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLREL 249 (386)
T ss_dssp CTGGGHHHHHHHHHHCTTCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEE
T ss_pred CCcHHHHHHHHHHHhCCCcCEEECcCC-CCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEE
Confidence 75322 3346678888888865 5551 3444778888888888887776542 2334567888888888
Q ss_pred eccee
Q 003822 204 RFQNW 208 (793)
Q Consensus 204 ~~~~~ 208 (793)
.++.|
T Consensus 250 ~L~~n 254 (386)
T 2ca6_A 250 GLNDC 254 (386)
T ss_dssp ECTTC
T ss_pred ECCCC
Confidence 88765
No 367
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=95.56 E-value=0.003 Score=66.87 Aligned_cols=145 Identities=15% Similarity=0.163 Sum_probs=97.9
Q ss_pred HHHHHhhcCCCcceeEEeecCCccccchHHHHHHHHHhccceeEEeccCCchhhHH--HHHhhcCCc-eeeEeecccccc
Q 003822 61 LLEVCMQIGATEIEAVDVRSGTSCMLTGEFALSLMHAIDQKLRVVDLHDSSFGKDF--IRNLSQRGL-MCEVLNLRSSRF 137 (793)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~ 137 (793)
+.+++..+..+.++.+|+.+- .+.+.....++.+-..+|+..||+++.+...+ +..+...++ .=+.|+|+.+++
T Consensus 81 ~~~~~~~~~~~~L~~L~l~~n---~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l 157 (310)
T 4glp_A 81 LVGALRVLAYSRLKELTLEDL---KITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHS 157 (310)
T ss_dssp HHHHHHHHHHSCCCEEEEESC---CCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSS
T ss_pred HHHHHHhcccCceeEEEeeCC---EeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCc
Confidence 444555555566888888432 22221111111134678999999999987532 222322333 568999999999
Q ss_pred cccc--cccccceeeEEeeccccccc---cccccccccccccceeccccccchhhhHHHHH-HhcCCcccceeccee
Q 003822 138 RKLN--MIGEFKRIHTLNLDYSTSLT---SFKEDCFSCMPNLICLSMCETRVGNLWTTIAA-LSKLPSLAELRFQNW 208 (793)
Q Consensus 138 ~~~~--~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 208 (793)
..+. ..+.+.+|++|+|.++.-.+ -....|+.-+|+|+.|.+-..++..+=....+ +..+++|++|....+
T Consensus 158 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N 234 (310)
T 4glp_A 158 PAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHN 234 (310)
T ss_dssp CCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTS
T ss_pred chhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCC
Confidence 7764 55689999999999775333 22357889999999999999888655333444 589999999988764
No 368
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=95.56 E-value=1.6 Score=46.75 Aligned_cols=147 Identities=9% Similarity=0.073 Sum_probs=82.1
Q ss_pred CCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcccccccCCceeEecCCCCeEEEEEccC---CCEEEEEEC-C---
Q 003822 499 NSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSM---DELFLASGY-S--- 571 (793)
Q Consensus 499 ~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~---~~~lla~g~-D--- 571 (793)
.....++|. ++|+++ ++..+|.|.+++ .+.. ...... . +..........|+++|+ ++.++++.. .
T Consensus 31 ~~P~~ia~~-pdG~l~-V~e~~g~I~~i~--~g~~--~~~~~~-~-v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~ 102 (352)
T 2ism_A 31 EVPWALAFL-PDGGML-IAERPGRIRLFR--EGRL--STYAEL-S-VYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGG 102 (352)
T ss_dssp SCEEEEEEC-TTSCEE-EEETTTEEEEEE--TTEE--EEEEEC-C-CCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTS
T ss_pred CCceEEEEc-CCCeEE-EEeCCCeEEEEE--CCCc--cEeecc-e-EeecCCCCceeEEECCCCCCCCEEEEEEecCCCC
Confidence 356789987 688754 456679999998 3321 111000 0 11122356889999887 566666543 2
Q ss_pred --CcEEEEECCCCc-----EE-EEEc--ccCCCCeEEEEEcCCCCcEEEEEeC-------------CCeEEEEECCCC--
Q 003822 572 --KNIALYDINSGR-----RL-QVFA--DMHKEHINVVKFSNHSPSIFATSSF-------------DQDVKLWDLRQK-- 626 (793)
Q Consensus 572 --g~I~IWDl~tg~-----~l-~~~~--~gh~~~V~sv~fspdg~~~LaTgs~-------------Dg~IrIWDlrt~-- 626 (793)
+.|..|+...+. .+ ..+. .+.......++|.|+| .++++.+. .|.|.-+|....
T Consensus 103 ~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG-~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p 181 (352)
T 2ism_A 103 LRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDG-MLYVTTGEVYERELAQDLASLGGKILRLTPEGEPA 181 (352)
T ss_dssp SEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTS-CEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBC
T ss_pred CccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCC-CEEEEECCCCCCccccCCCCCceEEEEEcCCCCCC
Confidence 678888877442 11 1232 1111234689999999 66666432 255666665431
Q ss_pred ----------CccceEEccCCCCeEEEEEec-CCCEEEEE
Q 003822 627 ----------PIQPCYTASSSKGNVMVCFSP-DDHYLLVS 655 (793)
Q Consensus 627 ----------~~~~~~~l~~~~~~vsv~fSp-dg~~Lasg 655 (793)
....++. .++..+..++|+| +|+..++-
T Consensus 182 ~~npf~~~~~~~~~i~a-~G~rnp~g~a~d~~~g~l~v~d 220 (352)
T 2ism_A 182 PGNPFLGRRGARPEVYS-LGHRNPQGLAWHPKTGELFSSE 220 (352)
T ss_dssp TTCTTTTCTTSCTTEEE-ECCSEECCCEECTTTCCEEEEE
T ss_pred CCCcccCCCCCCccEEE-EcCCCcccEEEECCCCCEEEEE
Confidence 0112222 2444555699999 56654443
No 369
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=95.54 E-value=0.0039 Score=69.53 Aligned_cols=102 Identities=19% Similarity=0.283 Sum_probs=57.3
Q ss_pred cceeEEeccCCchhh---HHHHHhhcCCceeeEeecccccccccc--cccccceeeEEeecccccccccccccccccccc
Q 003822 100 QKLRVVDLHDSSFGK---DFIRNLSQRGLMCEVLNLRSSRFRKLN--MIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNL 174 (793)
Q Consensus 100 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (793)
.+|+..+|.++.+.. +.+..| -+=+.|+|+.+++..+. ..+.+.+|.+|+|.+ +.|+.+....|.-||+|
T Consensus 88 ~~L~~L~Ls~n~i~~i~~~~~~~l----~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-N~i~~~~~~~~~~l~~L 162 (440)
T 3zyj_A 88 RHLEILQLSRNHIRTIEIGAFNGL----ANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRN-NPIESIPSYAFNRIPSL 162 (440)
T ss_dssp SSCCEEECCSSCCCEECGGGGTTC----SSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCS-CCCCEECTTTTTTCTTC
T ss_pred CCCCEEECCCCcCCccChhhccCC----ccCCEEECCCCcCCeeCHhHhhccccCceeeCCC-CcccccCHHHhhhCccc
Confidence 467777777765432 111111 12456777777666654 245566677777763 34666666667777777
Q ss_pred ceecccc-ccchhhhHHHHHHhcCCcccceeccee
Q 003822 175 ICLSMCE-TRVGNLWTTIAALSKLPSLAELRFQNW 208 (793)
Q Consensus 175 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (793)
..|.+-. ..+..+ ...++.+|++|++|.+..|
T Consensus 163 ~~L~l~~~~~l~~i--~~~~~~~l~~L~~L~L~~n 195 (440)
T 3zyj_A 163 RRLDLGELKRLSYI--SEGAFEGLSNLRYLNLAMC 195 (440)
T ss_dssp CEEECCCCTTCCEE--CTTTTTTCSSCCEEECTTS
T ss_pred CEeCCCCCCCccee--CcchhhcccccCeecCCCC
Confidence 7666654 222211 1124566666666666554
No 370
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=95.54 E-value=0.005 Score=61.94 Aligned_cols=101 Identities=20% Similarity=0.337 Sum_probs=79.1
Q ss_pred cceeEEeccCCchhh---HHHHHhhcCCceeeEeeccccccccccc--ccccceeeEEeecccccccccccccccccccc
Q 003822 100 QKLRVVDLHDSSFGK---DFIRNLSQRGLMCEVLNLRSSRFRKLNM--IGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNL 174 (793)
Q Consensus 100 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (793)
.+|+..+|+++.+.. +.+..| -.=+.|+|+.+++..+.- .+.+.+|.+|+|.+ ..|+.+..+.|..||+|
T Consensus 56 ~~L~~L~Ls~N~i~~~~~~~~~~l----~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L 130 (220)
T 2v9t_B 56 KKLRRIDLSNNQISELAPDAFQGL----RSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNA-NKINCLRVDAFQDLHNL 130 (220)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTC----SSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTC
T ss_pred CCCCEEECCCCcCCCcCHHHhhCC----cCCCEEECCCCcCCccCHhHccCCCCCCEEECCC-CCCCEeCHHHcCCCCCC
Confidence 579999999987653 222222 235789999999998754 56788999999995 57999999999999999
Q ss_pred ceeccccccchhhhHHHHHHhcCCcccceecce
Q 003822 175 ICLSMCETRVGNLWTTIAALSKLPSLAELRFQN 207 (793)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (793)
+.|++-..++..+= ..++..+++|++|.++.
T Consensus 131 ~~L~L~~N~l~~~~--~~~~~~l~~L~~L~L~~ 161 (220)
T 2v9t_B 131 NLLSLYDNKLQTIA--KGTFSPLRAIQTMHLAQ 161 (220)
T ss_dssp CEEECCSSCCSCCC--TTTTTTCTTCCEEECCS
T ss_pred CEEECCCCcCCEEC--HHHHhCCCCCCEEEeCC
Confidence 99999888776553 23578899999998864
No 371
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=95.53 E-value=0.0031 Score=63.44 Aligned_cols=76 Identities=18% Similarity=0.333 Sum_probs=33.5
Q ss_pred eEeecccccccccc---cccccceeeEEeeccccccccccccccccccccceeccccccchhhhHHHHHHhcCCccccee
Q 003822 128 EVLNLRSSRFRKLN---MIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELR 204 (793)
Q Consensus 128 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (793)
+.|+|+.+++..+. ..+.+.+|.+|+|.+ ..|+.+..+.|..|++|..|.+-..++..+- ..++..|++|++|.
T Consensus 35 ~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~-N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~--~~~~~~l~~L~~L~ 111 (220)
T 2v70_A 35 AELRLNNNEFTVLEATGIFKKLPQLRKINFSN-NKITDIEEGAFEGASGVNEILLTSNRLENVQ--HKMFKGLESLKTLM 111 (220)
T ss_dssp SEEECCSSCCCEECCCCCGGGCTTCCEEECCS-SCCCEECTTTTTTCTTCCEEECCSSCCCCCC--GGGGTTCSSCCEEE
T ss_pred CEEEcCCCcCCccCchhhhccCCCCCEEECCC-CcCCEECHHHhCCCCCCCEEECCCCccCccC--HhHhcCCcCCCEEE
Confidence 34444444444441 234444455555542 2344444445555555555444444443221 12344444444444
Q ss_pred cc
Q 003822 205 FQ 206 (793)
Q Consensus 205 ~~ 206 (793)
+.
T Consensus 112 Ls 113 (220)
T 2v70_A 112 LR 113 (220)
T ss_dssp CT
T ss_pred CC
Confidence 43
No 372
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=95.53 E-value=0.42 Score=49.58 Aligned_cols=190 Identities=13% Similarity=0.159 Sum_probs=99.6
Q ss_pred CCCEEEEEeCC-----CeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCC-----cEEEEEcCCCCCc
Q 003822 465 ISCLMVFGTLD-----GEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNG-----SLKLYDIRHMPPS 534 (793)
Q Consensus 465 d~~~Lasgs~D-----G~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~Dg-----tV~vWDl~~~~~~ 534 (793)
++.+++.|+.+ ..+.+||..+.+....-........- +++. .++..++.|+.++ .+.+||+.+.+-.
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~ 137 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTL-GAAV--LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWF 137 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSC-EEEE--ETTEEEEEEEECSSCEEEEEEEEETTTTEEE
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccce-EEEE--ECCEEEEEcCCCCCccCceEEEEeCCCCeEe
Confidence 45677787754 35889999887755433222211222 2222 2567777787653 4777887765421
Q ss_pred ccccccCCceeEecCCCCeEEEEEccCCCEEEEEEC-------CCcEEEEECCCCcEEEE--EcccCCCCeEEEEEcCCC
Q 003822 535 IRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY-------SKNIALYDINSGRRLQV--FADMHKEHINVVKFSNHS 605 (793)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~-------Dg~I~IWDl~tg~~l~~--~~~gh~~~V~sv~fspdg 605 (793)
....... .......+.+ ++..++.+|. -..+.+||+.+.+-... +.. .......+.+ ++
T Consensus 138 --~~~~~p~-----~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~~--~~ 205 (302)
T 2xn4_A 138 --HVAPMNT-----RRSSVGVGVV--GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMST-RRSGAGVGVL--NN 205 (302)
T ss_dssp --EECCCSS-----CCBSCEEEEE--TTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSS-CCBSCEEEEE--TT
T ss_pred --ecCCCCC-----cccCceEEEE--CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCcc-ccccccEEEE--CC
Confidence 1110000 0011122222 4555555553 24588999988754432 221 1111222333 44
Q ss_pred CcEEEEEeCC-----CeEEEEECCCCCccceEEccCCCCeEEEEEecCCCEEEEEeCCC-----eEEEEEcCCCcE
Q 003822 606 PSIFATSSFD-----QDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLVSAVDN-----EVRQLLAVDGRV 671 (793)
Q Consensus 606 ~~~LaTgs~D-----g~IrIWDlrt~~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs~Dg-----~I~IwDl~tg~~ 671 (793)
.+++.|+.+ ..+.+||+.+.....+...+.......++. -+++.++.|+.++ .+.+||..+.+.
T Consensus 206 -~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 279 (302)
T 2xn4_A 206 -LLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCA-VNGLLYVVGGDDGSCNLASVEYYNPTTDKW 279 (302)
T ss_dssp -EEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred -EEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEE-ECCEEEEECCcCCCcccccEEEEcCCCCeE
Confidence 788888765 368999998864443322222111112222 2667777776543 588899887754
No 373
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=95.53 E-value=0.0034 Score=68.15 Aligned_cols=105 Identities=15% Similarity=0.168 Sum_probs=76.6
Q ss_pred cceeEEeccCCchhhHHHHHhhc-CCceeeEeecccccccccc--cccccceeeEEeeccccccccccccccccccccce
Q 003822 100 QKLRVVDLHDSSFGKDFIRNLSQ-RGLMCEVLNLRSSRFRKLN--MIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLIC 176 (793)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (793)
..++.+||+++.+..-. .+.+. .=-+=+.|+|+.+++..+. ..+.+.+|.+|+|.+ ..|+.+..+.|..|++|..
T Consensus 39 ~~l~~L~Ls~N~l~~l~-~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~ 116 (361)
T 2xot_A 39 SYTALLDLSHNNLSRLR-AEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS-NHLHTLDEFLFSDLQALEV 116 (361)
T ss_dssp TTCSEEECCSSCCCEEC-TTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS-SCCCEECTTTTTTCTTCCE
T ss_pred CCCCEEECCCCCCCccC-hhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC-CcCCcCCHHHhCCCcCCCE
Confidence 45778888887664311 11111 1123478899989888876 367788999999996 4699999999999999999
Q ss_pred eccccccchhhhHHHHHHhcCCcccceeccee
Q 003822 177 LSMCETRVGNLWTTIAALSKLPSLAELRFQNW 208 (793)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (793)
|.+-..++..+ ...++.+|++|++|....+
T Consensus 117 L~L~~N~i~~~--~~~~~~~l~~L~~L~L~~N 146 (361)
T 2xot_A 117 LLLYNNHIVVV--DRNAFEDMAQLQKLYLSQN 146 (361)
T ss_dssp EECCSSCCCEE--CTTTTTTCTTCCEEECCSS
T ss_pred EECCCCcccEE--CHHHhCCcccCCEEECCCC
Confidence 99988887654 2346788999999987764
No 374
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=95.53 E-value=0.003 Score=62.10 Aligned_cols=100 Identities=17% Similarity=0.297 Sum_probs=74.4
Q ss_pred ceeEEeccCCchhhH----HHHHhhcCCceeeEeeccccccccc--ccccccceeeEEeecccccccccccccccccccc
Q 003822 101 KLRVVDLHDSSFGKD----FIRNLSQRGLMCEVLNLRSSRFRKL--NMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNL 174 (793)
Q Consensus 101 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (793)
+|+..+|.++.++.- ++..|. .=+.|+|+.+++..+ ...+.+.+|.+|+|.+ ..|+.+...-|.-||+|
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~----~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L 104 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLP----HLVKLELKRNQLTGIEPNAFEGASHIQELQLGE-NKIKEISNKMFLGLHQL 104 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCT----TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS-CCCCEECSSSSTTCTTC
T ss_pred CCCEEECCCCcCCccCCccccccCC----CCCEEECCCCCCCCcCHhHcCCcccCCEEECCC-CcCCccCHHHhcCCCCC
Confidence 678888888766431 122222 347889998888887 4567788999999984 57899998999999999
Q ss_pred ceeccccccchhhhHHHHHHhcCCcccceecce
Q 003822 175 ICLSMCETRVGNLWTTIAALSKLPSLAELRFQN 207 (793)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (793)
..|++=..++..+- ..++.+|++|++|.++.
T Consensus 105 ~~L~L~~N~l~~~~--~~~~~~l~~L~~L~L~~ 135 (192)
T 1w8a_A 105 KTLNLYDNQISCVM--PGSFEHLNSLTSLNLAS 135 (192)
T ss_dssp CEEECCSSCCCEEC--TTSSTTCTTCCEEECTT
T ss_pred CEEECCCCcCCeeC--HHHhhcCCCCCEEEeCC
Confidence 99988887776542 24677889999988764
No 375
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=95.47 E-value=0.38 Score=51.65 Aligned_cols=196 Identities=9% Similarity=0.056 Sum_probs=107.1
Q ss_pred CEEEEEeCCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEe-eCCCCEEEEE--EcCCcEEEEEcCCCCCcccccccCCc
Q 003822 467 CLMVFGTLDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWL-KKYPSKLIAG--SDNGSLKLYDIRHMPPSIRGMHYGAG 543 (793)
Q Consensus 467 ~~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs-~~~g~~Lasg--s~DgtV~vWDl~~~~~~~~~~~~~~~ 543 (793)
.+++.++.||.|.-+|..+|+....+... ...++....-. ...+..++.+ +.||.|..++..++.........
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~-~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~--- 86 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPE-NFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIR--- 86 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGG-GSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHH---
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCC-ccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccc---
Confidence 47899999999999999999999888753 11223222100 0112234433 57999999998776432111000
Q ss_pred eeEecCCCCeEE--------EEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCC------eEEEEEc---C-CC
Q 003822 544 TVTFDEFDQLTS--------VHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEH------INVVKFS---N-HS 605 (793)
Q Consensus 544 ~~~~~~~~~V~s--------v~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~------V~sv~fs---p-dg 605 (793)
......++.. .--...++.+++++.+|.+...|+.+|+.+..+..+.... ..|.... . ..
T Consensus 87 --~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~ 164 (339)
T 2be1_A 87 --QLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQEC 164 (339)
T ss_dssp --HHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------
T ss_pred --cceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccC
Confidence 0001111111 0001257788899999999999999999999997422111 1111111 0 11
Q ss_pred CcEEEEEeCCCeEEEEECCCCCccceEEcc-----CC--CCeE--EEEEecCCCEEEEEeCCCeEEEEEcCCCcEEE
Q 003822 606 PSIFATSSFDQDVKLWDLRQKPIQPCYTAS-----SS--KGNV--MVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHL 673 (793)
Q Consensus 606 ~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~-----~~--~~~v--sv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~ 673 (793)
...++.|..+..+.+.+ ++++ ..... .. ...+ .-..+.|+.+ ++++.||.|.-+|..+|+.+.
T Consensus 165 ~~~v~ig~~~y~v~~~~-~sG~---~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 165 ENMIVIGKTIFELGIHS-YDGA---SYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp CCEEEEEEEEEECEECC-TTSC---CCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred CCeEEEecceEEEEEEC-CCCC---eEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcEEE
Confidence 14677777777777766 3432 11110 00 0000 0001234666 457778999989988888654
No 376
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=95.44 E-value=0.0041 Score=69.32 Aligned_cols=79 Identities=20% Similarity=0.306 Sum_probs=62.1
Q ss_pred eeEeecccccccccccccccceeeEEeeccccccccccccccccccccceeccccccchhhhHHHHHHhcCCcccceecc
Q 003822 127 CEVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELRFQ 206 (793)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (793)
=+.|+|+.+.+..+.-.+.+.+|++|+|.++ .|+.+....|..|++|..|.+-..++..+- ..++.+|++|++|.+.
T Consensus 187 L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~ 263 (440)
T 3zyj_A 187 LRYLNLAMCNLREIPNLTPLIKLDELDLSGN-HLSAIRPGSFQGLMHLQKLWMIQSQIQVIE--RNAFDNLQSLVEINLA 263 (440)
T ss_dssp CCEEECTTSCCSSCCCCTTCSSCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTCCCCEEC--TTSSTTCTTCCEEECT
T ss_pred cCeecCCCCcCccccccCCCcccCEEECCCC-ccCccChhhhccCccCCEEECCCCceeEEC--hhhhcCCCCCCEEECC
Confidence 4678888888888777778888888888865 788888888888888888888887776653 2467788888888876
Q ss_pred ee
Q 003822 207 NW 208 (793)
Q Consensus 207 ~~ 208 (793)
.+
T Consensus 264 ~N 265 (440)
T 3zyj_A 264 HN 265 (440)
T ss_dssp TS
T ss_pred CC
Confidence 54
No 377
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=95.43 E-value=0.015 Score=61.71 Aligned_cols=133 Identities=17% Similarity=0.181 Sum_probs=92.9
Q ss_pred CCcceeEEeecCCcc-ccchHHHHHHHHHhccceeEEeccCC-chhhHHHHHhhcCCc-eeeEeecccccc----cc-cc
Q 003822 70 ATEIEAVDVRSGTSC-MLTGEFALSLMHAIDQKLRVVDLHDS-SFGKDFIRNLSQRGL-MCEVLNLRSSRF----RK-LN 141 (793)
Q Consensus 70 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~----~~-~~ 141 (793)
-..++.+|+. .| .+.++-.-.++... .+|+..+|.++ .+....+..+...=- +=+.|+|+.+++ .. ..
T Consensus 141 ~~~L~~L~L~---~~~~l~~~~l~~~~~~~-~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~ 216 (336)
T 2ast_B 141 NSNLVRLNLS---GCSGFSEFALQTLLSSC-SRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLST 216 (336)
T ss_dssp CTTCSEEECT---TCBSCCHHHHHHHHHHC-TTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHH
T ss_pred CCCCCEEECC---CCCCCCHHHHHHHHhcC-CCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHH
Confidence 3566667763 33 46655444445444 57999999998 777665555443322 567899988743 22 24
Q ss_pred cccccceeeEEeeccccccccccccccccccccceecccccc-chhhhHHHHHHhcCCcccceeccee
Q 003822 142 MIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETR-VGNLWTTIAALSKLPSLAELRFQNW 208 (793)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (793)
+.+.+++|++|+|.+|..++.-....|.-+|+|+.|++-... +. .....+|.++|+|++|.+..|
T Consensus 217 ~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 217 LVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDII--PETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp HHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCC--GGGGGGGGGCTTCCEEECTTS
T ss_pred HHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCC--HHHHHHHhcCCCCCEEeccCc
Confidence 567789999999998887887666688889999998876653 22 223357889999999999877
No 378
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=95.41 E-value=0.46 Score=49.11 Aligned_cols=191 Identities=14% Similarity=0.165 Sum_probs=99.7
Q ss_pred CCCEEEEEeCC-----CeEEEEECCCCe---EEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcC-----CcEEEEEcCCC
Q 003822 465 ISCLMVFGTLD-----GEIVVVNHENEN---IVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDN-----GSLKLYDIRHM 531 (793)
Q Consensus 465 d~~~Lasgs~D-----G~I~VWd~~t~~---~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~D-----gtV~vWDl~~~ 531 (793)
++.+++.|+.+ ..+.+||..+++ ....-........- +++. .++..++.|+.+ ..+.+||..+.
T Consensus 62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~-~~~~--~~~~lyv~GG~~~~~~~~~~~~~d~~~~ 138 (301)
T 2vpj_A 62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLA-GATT--LGDMIYVSGGFDGSRRHTSMERYDPNID 138 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSC-EEEE--ETTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccce-eEEE--ECCEEEEEcccCCCcccceEEEEcCCCC
Confidence 45778888755 468999998766 43332221111122 2222 256677777654 35788888765
Q ss_pred CCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEECC-----CcEEEEECCCCcEEEEEcccCC-CCeEEEEEcCCC
Q 003822 532 PPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYS-----KNIALYDINSGRRLQVFADMHK-EHINVVKFSNHS 605 (793)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~D-----g~I~IWDl~tg~~l~~~~~gh~-~~V~sv~fspdg 605 (793)
+-.. ..... ........+.+ ++..++.||.+ ..+.+||+.+.+-...-.-... .....+.+ ++
T Consensus 139 ~W~~--~~~~p-----~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~ 207 (301)
T 2vpj_A 139 QWSM--LGDMQ-----TAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL--ND 207 (301)
T ss_dssp EEEE--EEECS-----SCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TT
T ss_pred eEEE--CCCCC-----CCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE--CC
Confidence 4311 11000 00011122222 45556666643 5689999988754433110011 11122333 44
Q ss_pred CcEEEEEeCC-----CeEEEEECCCCCccceEEccCCCCeEEEEEecCCCEEEEEeCC-----CeEEEEEcCCCcE
Q 003822 606 PSIFATSSFD-----QDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLVSAVD-----NEVRQLLAVDGRV 671 (793)
Q Consensus 606 ~~~LaTgs~D-----g~IrIWDlrt~~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs~D-----g~I~IwDl~tg~~ 671 (793)
.+++.|+.+ ..+.+||+.+.....+..++......+++. -+++.++.|+.+ +.+.+||..+.+.
T Consensus 208 -~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 281 (301)
T 2vpj_A 208 -HIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATV-LRGRLYAIAGYDGNSLLSSIECYDPIIDSW 281 (301)
T ss_dssp -EEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCBCSSSBEEEEEEEETTTTEE
T ss_pred -EEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEE-ECCEEEEEcCcCCCcccccEEEEcCCCCeE
Confidence 788888764 468999998865443322222221112222 266777777654 4678888877654
No 379
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=95.39 E-value=0.018 Score=64.13 Aligned_cols=133 Identities=16% Similarity=0.147 Sum_probs=71.5
Q ss_pred cceeEEeecCCccccchHHHHHHHHHh---ccceeEEeccCCchhhHHHHHhhc---CCceeeEeecccccccccc----
Q 003822 72 EIEAVDVRSGTSCMLTGEFALSLMHAI---DQKLRVVDLHDSSFGKDFIRNLSQ---RGLMCEVLNLRSSRFRKLN---- 141 (793)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~---- 141 (793)
.++.+|+.+ +.+.+.-+..+..++ ..+|+..+|.++.++.+.+..+.. .--+=+.|+|+.+++....
T Consensus 171 ~L~~L~L~~---n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l 247 (461)
T 1z7x_W 171 DFKELTVSN---NDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAEL 247 (461)
T ss_dssp TCCEEECCS---SBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHH
T ss_pred CCCEEECcC---CCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHH
Confidence 566666633 335444444444433 447777777777776654333322 1223356777777665532
Q ss_pred ---cccccceeeEEeecccccccccc----ccccccccccceeccccccchhhh--HHHHHHhc-CCcccceeccee
Q 003822 142 ---MIGEFKRIHTLNLDYSTSLTSFK----EDCFSCMPNLICLSMCETRVGNLW--TTIAALSK-LPSLAELRFQNW 208 (793)
Q Consensus 142 ---~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~ 208 (793)
+.+...+|.+|+|.++ .|+... ...|..||+|+.|++-..++.+.- ....++.+ .++|++|.+..|
T Consensus 248 ~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n 323 (461)
T 1z7x_W 248 CPGLLHPSSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSC 323 (461)
T ss_dssp HHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred HHHHhcCCCCceEEECcCC-CCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCC
Confidence 2224567777777766 566521 223556777777777666654421 11122222 256777776655
No 380
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=95.36 E-value=0.0046 Score=69.20 Aligned_cols=105 Identities=17% Similarity=0.201 Sum_probs=67.3
Q ss_pred cceeEEeccCCchhhHHHHHhhcCCceeeEeeccccccccccc--ccccceeeEEeecccccccccccccccccccccee
Q 003822 100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLNM--IGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICL 177 (793)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (793)
.+|+..+|.++.+..-.. +.+.+=-+=+.|+|+.+++..+.- .+.+.+|.+|+|.+ +.|+.++...|.-||+|+.|
T Consensus 99 ~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L 176 (452)
T 3zyi_A 99 HHLEVLQLGRNSIRQIEV-GAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRN-NPIESIPSYAFNRVPSLMRL 176 (452)
T ss_dssp TTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCS-CCCCEECTTTTTTCTTCCEE
T ss_pred CCCCEEECCCCccCCcCh-hhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCC-CCcceeCHhHHhcCCcccEE
Confidence 578888888876543110 111111235778888888776643 55677888888884 45788888888888888888
Q ss_pred cccc-ccchhhhHHHHHHhcCCcccceeccee
Q 003822 178 SMCE-TRVGNLWTTIAALSKLPSLAELRFQNW 208 (793)
Q Consensus 178 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (793)
.+-. ..+..+ ...++.+|++|++|.+..|
T Consensus 177 ~l~~~~~l~~i--~~~~~~~l~~L~~L~L~~n 206 (452)
T 3zyi_A 177 DLGELKKLEYI--SEGAFEGLFNLKYLNLGMC 206 (452)
T ss_dssp ECCCCTTCCEE--CTTTTTTCTTCCEEECTTS
T ss_pred eCCCCCCcccc--ChhhccCCCCCCEEECCCC
Confidence 7765 333222 1235677888888877665
No 381
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=95.29 E-value=0.0075 Score=59.36 Aligned_cols=80 Identities=19% Similarity=0.319 Sum_probs=66.6
Q ss_pred eeeEeeccccccccc-ccccccceeeEEeeccccccccccccccccccccceeccccccchhhhHHHHHHhcCCccccee
Q 003822 126 MCEVLNLRSSRFRKL-NMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELR 204 (793)
Q Consensus 126 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (793)
.-+.|+|+.++|..+ ...+.+.+|.+|+|. ...|+.+..+-|..|++|+.|.+-..++..+= ..++.+|++|++|.
T Consensus 32 ~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls-~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~--~~~f~~l~~L~~L~ 108 (193)
T 2wfh_A 32 DVTELYLDGNQFTLVPKELSNYKHLTLIDLS-NNRISTLSNQSFSNMTQLLTLILSYNRLRCIP--PRTFDGLKSLRLLS 108 (193)
T ss_dssp TCCEEECCSSCCCSCCGGGGGCTTCCEEECC-SSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC--TTTTTTCTTCCEEE
T ss_pred CCCEEECCCCcCchhHHHhhcccCCCEEECC-CCcCCEeCHhHccCCCCCCEEECCCCccCEeC--HHHhCCCCCCCEEE
Confidence 357899999999887 456777899999999 56799999999999999999999888876542 24688999999999
Q ss_pred ccee
Q 003822 205 FQNW 208 (793)
Q Consensus 205 ~~~~ 208 (793)
...+
T Consensus 109 L~~N 112 (193)
T 2wfh_A 109 LHGN 112 (193)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 8753
No 382
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=95.29 E-value=0.0088 Score=62.24 Aligned_cols=105 Identities=18% Similarity=0.181 Sum_probs=67.5
Q ss_pred cceeEEeccCCchhhHHHHHhhcCCceeeEeeccccccccccc--ccccceeeEEeecccccccccccccccccccccee
Q 003822 100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLNM--IGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICL 177 (793)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (793)
.+|+.++|..+.+..-. .+.+..=-+=+.|+|+.+++..+.. .+.+.+|.+|+|.++ .++.+....|..||+|..|
T Consensus 105 ~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L 182 (285)
T 1ozn_A 105 GRLHTLHLDRCGLQELG-PGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGN-RISSVPERAFRGLHSLDRL 182 (285)
T ss_dssp TTCCEEECTTSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEE
T ss_pred cCCCEEECCCCcCCEEC-HhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCC-cccccCHHHhcCccccCEE
Confidence 57888888776654311 1111111123677777777776653 566778888888754 6777777778888888888
Q ss_pred ccccccchhhhHHHHHHhcCCcccceeccee
Q 003822 178 SMCETRVGNLWTTIAALSKLPSLAELRFQNW 208 (793)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (793)
++-..++..+- ..++.++++|++|.+..+
T Consensus 183 ~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n 211 (285)
T 1ozn_A 183 LLHQNRVAHVH--PHAFRDLGRLMTLYLFAN 211 (285)
T ss_dssp ECCSSCCCEEC--TTTTTTCTTCCEEECCSS
T ss_pred ECCCCcccccC--HhHccCcccccEeeCCCC
Confidence 77776665541 245667777777777654
No 383
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=95.28 E-value=0.62 Score=51.33 Aligned_cols=144 Identities=14% Similarity=0.191 Sum_probs=93.9
Q ss_pred CCCCEEEEEEcCCcEEEEEcCCCCCcccccccCCceeEec---CCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCc--
Q 003822 509 KYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFD---EFDQLTSVHVNSMDELFLASGYSKNIALYDINSGR-- 583 (793)
Q Consensus 509 ~~g~~Lasgs~DgtV~vWDl~~~~~~~~~~~~~~~~~~~~---~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~-- 583 (793)
.++..++.+- ++.||.-++..... . ...... ....|..+..+|.+.+++..| +..|.|..+..+.
T Consensus 30 ~n~t~i~~a~-~n~iR~~~i~~~~~-Y-------k~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~ 99 (452)
T 3pbp_A 30 QNGTRIVFIQ-DNIIRWYNVLTDSL-Y-------HSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSN 99 (452)
T ss_dssp TTTTEEEEEE-TTEEEEEETTTCSS-C-------EEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSC
T ss_pred cCCCEEEEEE-CCEEEEEECCCCCc-c-------eEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCcccc
Confidence 5666666664 46788878774321 1 122222 124577888887777776665 5688888887321
Q ss_pred ----------EEEEEccc-----CCCCeEEEEEcCCCC--cEEEEEeCCCeEEEEECCCCCccceEEccCC---------
Q 003822 584 ----------RLQVFADM-----HKEHINVVKFSNHSP--SIFATSSFDQDVKLWDLRQKPIQPCYTASSS--------- 637 (793)
Q Consensus 584 ----------~l~~~~~g-----h~~~V~sv~fspdg~--~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~--------- 637 (793)
..+.+.-+ ...+|..+.|||.+. ..|++-..|+.||+||+......|. .+...
T Consensus 100 ~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~ 178 (452)
T 3pbp_A 100 VEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDAR 178 (452)
T ss_dssp CCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSS
T ss_pred CcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcc
Confidence 12334311 256899999999764 3899999999999999987443444 22211
Q ss_pred -CCeEEEEEecCCCEEEEEe--CCCeEEE
Q 003822 638 -KGNVMVCFSPDDHYLLVSA--VDNEVRQ 663 (793)
Q Consensus 638 -~~~vsv~fSpdg~~Lasgs--~Dg~I~I 663 (793)
..+.+++|.++|-.|.+.+ ..|.|+-
T Consensus 179 ~~ev~S~~Fg~~~lTLYvl~~t~~GDIYA 207 (452)
T 3pbp_A 179 VNDITDLEFSKDGLTLYCLNTTEGGDIFA 207 (452)
T ss_dssp CCCEEEEEECTTSSCEEEEECTTSCEEEE
T ss_pred cceEEEEEEcCCCcEEEEEecCCCCCEEE
Confidence 3445799999888888866 7787764
No 384
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=95.22 E-value=0.05 Score=59.40 Aligned_cols=133 Identities=17% Similarity=0.186 Sum_probs=97.9
Q ss_pred CcceeEEeecCCccccchHHHHHHHHHhccceeEEeccCCchhhHHHHHhhc----CCceeeEeeccccccccccc----
Q 003822 71 TEIEAVDVRSGTSCMLTGEFALSLMHAIDQKLRVVDLHDSSFGKDFIRNLSQ----RGLMCEVLNLRSSRFRKLNM---- 142 (793)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~---- 142 (793)
..++.+|+ +.|.+..+-+..+..++. +|+..||.++.++..-.+.|++ ..-.=+.|+|+.+.+....+
T Consensus 101 ~~L~~L~L---s~n~l~~~~~~~l~~~L~-~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~ 176 (372)
T 3un9_A 101 HALDEVNL---ASCQLDPAGLRTLLPVFL-RARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLM 176 (372)
T ss_dssp SCEEEEEC---TTCCCCHHHHHHTHHHHH-TEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHH
T ss_pred CCceEEEe---cCCCCCHHHHHHHHHHHH-hccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHH
Confidence 47888887 445677776666666654 7999999999999877776653 23345789999998865322
Q ss_pred --ccccceeeEEeecccccccccc----ccccccccccceeccccccchhh--hHHHHHHhcCCcccceeccee
Q 003822 143 --IGEFKRIHTLNLDYSTSLTSFK----EDCFSCMPNLICLSMCETRVGNL--WTTIAALSKLPSLAELRFQNW 208 (793)
Q Consensus 143 --~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 208 (793)
.....+|.+|+|.++. |+... ...+..+++|..|++-...+.+. -....||.+.|+|++|.+..|
T Consensus 177 ~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N 249 (372)
T 3un9_A 177 EGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFN 249 (372)
T ss_dssp HHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTS
T ss_pred HHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCC
Confidence 2456789999999764 66544 34567788999998888877653 345567889999999998764
No 385
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=95.19 E-value=0.0062 Score=63.08 Aligned_cols=78 Identities=23% Similarity=0.309 Sum_probs=39.2
Q ss_pred eeEeeccccccccccc--ccccceeeEEeeccccccccccccccccccccceeccccccchhhhHHHHHHhcCCccccee
Q 003822 127 CEVLNLRSSRFRKLNM--IGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELR 204 (793)
Q Consensus 127 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (793)
=+.|+|+.+++..+.- .+.+.+|++|+|.+ ..++.+..+.|..|++|+.|.+-..++..+-. .++.++++|++|.
T Consensus 54 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~ 130 (276)
T 2z62_A 54 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG-NPIQSLALGAFSGLSSLQKLVAVETNLASLEN--FPIGHLKTLKELN 130 (276)
T ss_dssp CSEEECTTCCCCEECTTTTTTCTTCCEEECTT-CCCCEECTTTTTTCTTCCEEECTTSCCCCSTT--CCCTTCTTCCEEE
T ss_pred CcEEECCCCcCCccCHHHccCCcCCCEEECCC-CccCccChhhhcCCccccEEECCCCCccccCc--hhcccCCCCCEEE
Confidence 3455555555554432 34455555555552 34555555555555555555555444433211 1245555555555
Q ss_pred cce
Q 003822 205 FQN 207 (793)
Q Consensus 205 ~~~ 207 (793)
+..
T Consensus 131 l~~ 133 (276)
T 2z62_A 131 VAH 133 (276)
T ss_dssp CCS
T ss_pred CcC
Confidence 543
No 386
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=95.10 E-value=0.0072 Score=61.23 Aligned_cols=100 Identities=15% Similarity=0.221 Sum_probs=68.1
Q ss_pred ceeEEeccCCchhh---HHHHHhhcCCceeeEeeccccc-ccccc--cccccceeeEEeecccccccccccccccccccc
Q 003822 101 KLRVVDLHDSSFGK---DFIRNLSQRGLMCEVLNLRSSR-FRKLN--MIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNL 174 (793)
Q Consensus 101 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (793)
+|+.++|+++.+.. +.+..+ -.=+.|+|+.++ +..+. ..+.+.+|.+|+|.++..|+.++.+.|..||+|
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l----~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L 107 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNL----PNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLL 107 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTC----TTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTC
T ss_pred cccEEEEeCCcceEECHHHccCC----CCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCC
Confidence 56666666654432 111111 124677787776 76665 346678899999998788999999999999999
Q ss_pred ceeccccccchhhhHHHHHHhcCCccc---ceeccee
Q 003822 175 ICLSMCETRVGNLWTTIAALSKLPSLA---ELRFQNW 208 (793)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 208 (793)
+.|++-+.++..+ .++..+++|+ +|.+..+
T Consensus 108 ~~L~l~~n~l~~l----p~~~~l~~L~~L~~L~l~~N 140 (239)
T 2xwt_C 108 KFLGIFNTGLKMF----PDLTKVYSTDIFFILEITDN 140 (239)
T ss_dssp CEEEEEEECCCSC----CCCTTCCBCCSEEEEEEESC
T ss_pred CEEeCCCCCCccc----cccccccccccccEEECCCC
Confidence 9998888776653 2266677776 7777654
No 387
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=95.10 E-value=0.0061 Score=61.76 Aligned_cols=80 Identities=16% Similarity=0.282 Sum_probs=66.4
Q ss_pred eeEeeccccccccccc--ccccceeeEEeeccccccccccccccccccccceecccc-ccchhhhHHHHHHhcCCcccce
Q 003822 127 CEVLNLRSSRFRKLNM--IGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCE-TRVGNLWTTIAALSKLPSLAEL 203 (793)
Q Consensus 127 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 203 (793)
=+.|+|+.+++..+.- .+.+.+|.+|+|..+..|+.++.+.|..||+|+.|.+-. .++..+ ...++.++++|++|
T Consensus 33 l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i--~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 33 TQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYI--DPDALKELPLLKFL 110 (239)
T ss_dssp CCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEE--CTTSEECCTTCCEE
T ss_pred ccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEc--CHHHhCCCCCCCEE
Confidence 4689999999998854 677899999999988779999999999999999999876 565533 12467889999999
Q ss_pred eccee
Q 003822 204 RFQNW 208 (793)
Q Consensus 204 ~~~~~ 208 (793)
.+..+
T Consensus 111 ~l~~n 115 (239)
T 2xwt_C 111 GIFNT 115 (239)
T ss_dssp EEEEE
T ss_pred eCCCC
Confidence 99876
No 388
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=95.07 E-value=0.0086 Score=60.52 Aligned_cols=79 Identities=20% Similarity=0.298 Sum_probs=63.1
Q ss_pred eeeEeecccccccccc--cccccceeeEEeeccccccccccccccccccccceeccccccchhhhHHHHHHhcCCcccce
Q 003822 126 MCEVLNLRSSRFRKLN--MIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAEL 203 (793)
Q Consensus 126 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (793)
+-+.|+|+.+++..+. ..+.+.+|.+|+|.+ ..|+.++..-|..||+|+.|++-..++..+- ..++.+|++|++|
T Consensus 41 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~-N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~--~~~~~~l~~L~~L 117 (229)
T 3e6j_A 41 NAQILYLHDNQITKLEPGVFDSLINLKELYLGS-NQLGALPVGVFDSLTQLTVLDLGTNQLTVLP--SAVFDRLVHLKEL 117 (229)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCCCCC--TTTTTTCTTCCEE
T ss_pred CCCEEEcCCCccCccCHHHhhCccCCcEEECCC-CCCCCcChhhcccCCCcCEEECCCCcCCccC--hhHhCcchhhCeE
Confidence 4578999999988873 367788999999995 4689999999999999999998888776542 2346788999999
Q ss_pred ecce
Q 003822 204 RFQN 207 (793)
Q Consensus 204 ~~~~ 207 (793)
.+..
T Consensus 118 ~Ls~ 121 (229)
T 3e6j_A 118 FMCC 121 (229)
T ss_dssp ECCS
T ss_pred eccC
Confidence 8865
No 389
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=95.05 E-value=0.0038 Score=61.49 Aligned_cols=77 Identities=18% Similarity=0.295 Sum_probs=66.9
Q ss_pred eeeEeecccccccccccccccceeeEEeeccccccccccccccccccccceeccccccchhhhHHHHHHhcCCcccceec
Q 003822 126 MCEVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELRF 205 (793)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (793)
..+.|+|+.+++..+...+.+.+|.+|+|.++ .|+.++. -|..||+|..|++...++..+ .++.++++|++|.+
T Consensus 49 ~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n-~l~~l~~-~~~~~~~L~~L~L~~N~l~~l----~~~~~l~~L~~L~l 122 (198)
T 1ds9_A 49 ACKHLALSTNNIEKISSLSGMENLRILSLGRN-LIKKIEN-LDAVADTLEELWISYNQIASL----SGIEKLVNLRVLYM 122 (198)
T ss_dssp TCSEEECSEEEESCCCCHHHHTTCCEEEEEEE-EECSCSS-HHHHHHHCSEEEEEEEECCCH----HHHHHHHHSSEEEE
T ss_pred CCCEEECCCCCCccccccccCCCCCEEECCCC-Ccccccc-hhhcCCcCCEEECcCCcCCcC----CccccCCCCCEEEC
Confidence 46899999999999888888999999999965 7888875 677889999999999988875 36899999999999
Q ss_pred cee
Q 003822 206 QNW 208 (793)
Q Consensus 206 ~~~ 208 (793)
..+
T Consensus 123 ~~N 125 (198)
T 1ds9_A 123 SNN 125 (198)
T ss_dssp SEE
T ss_pred CCC
Confidence 876
No 390
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=94.93 E-value=0.014 Score=56.88 Aligned_cols=83 Identities=11% Similarity=0.141 Sum_probs=59.9
Q ss_pred CceeeEeecccccccccc--cccccceeeEEeeccccccccccccccccc----cccceecccc-ccchhhhHHHHHHhc
Q 003822 124 GLMCEVLNLRSSRFRKLN--MIGEFKRIHTLNLDYSTSLTSFKEDCFSCM----PNLICLSMCE-TRVGNLWTTIAALSK 196 (793)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~-~~~~~~~~~~~~~~~ 196 (793)
++.=+.|||+.+.+..-. -.....+|.+|+|.+|..||--.-.-.+-| |+|..|+..+ ++|.+ ..+++|++
T Consensus 60 ~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD--~Gl~~L~~ 137 (176)
T 3e4g_A 60 KYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTD--KGIIALHH 137 (176)
T ss_dssp CCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCH--HHHHHGGG
T ss_pred CceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCH--HHHHHHhc
Confidence 444455566555443322 235788999999999999987666666655 5799887766 46777 56788999
Q ss_pred CCcccceeccee
Q 003822 197 LPSLAELRFQNW 208 (793)
Q Consensus 197 ~~~~~~~~~~~~ 208 (793)
+|+|++|....|
T Consensus 138 ~~~L~~L~L~~c 149 (176)
T 3e4g_A 138 FRNLKYLFLSDL 149 (176)
T ss_dssp CTTCCEEEEESC
T ss_pred CCCCCEEECCCC
Confidence 999999988776
No 391
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=94.91 E-value=1.7 Score=46.77 Aligned_cols=146 Identities=8% Similarity=0.062 Sum_probs=81.8
Q ss_pred CCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcccccccCCceeEecCCCCeEEEEEccC---CCEEEEEEC----C
Q 003822 499 NSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSM---DELFLASGY----S 571 (793)
Q Consensus 499 ~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~---~~~lla~g~----D 571 (793)
.....++|. ++++ |+++..+|.|+++|. ++...+.... +..........|+++|+ ++.++++.. +
T Consensus 29 ~~P~~ia~~-pdG~-l~V~e~~g~I~~~d~-~G~~~~~~~~-----v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~ 100 (354)
T 3a9g_A 29 EVPWSIAPL-GGGR-YLVTERPGRLVLISP-SGKKLVASFD-----VANVGEAGLLGLALHPEFPKKSWVYLYASYFAEG 100 (354)
T ss_dssp SCEEEEEEE-ETTE-EEEEETTTEEEEECS-SCEEEEEECC-----CCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGG
T ss_pred CCCeEEEEc-CCCe-EEEEeCCCEEEEEeC-CCceEeeccc-----eeecCCCceeeEEeCCCCCcCCEEEEEEeccCCC
Confidence 457889997 5776 555566799998863 3221111100 11122356889999887 666666543 3
Q ss_pred ----CcEEEEECCCC--c-----EE-EEEcccCCCCeEEEEEcCCCCcEEEEEeC-------------CCeEEEEECCCC
Q 003822 572 ----KNIALYDINSG--R-----RL-QVFADMHKEHINVVKFSNHSPSIFATSSF-------------DQDVKLWDLRQK 626 (793)
Q Consensus 572 ----g~I~IWDl~tg--~-----~l-~~~~~gh~~~V~sv~fspdg~~~LaTgs~-------------Dg~IrIWDlrt~ 626 (793)
+.|..|+...+ . .+ ..+..+.......++|.|+| .++++.+. .|.|.-+|....
T Consensus 101 ~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG-~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~ 179 (354)
T 3a9g_A 101 GHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDG-MLYITTGDAADPRLAQDLSSLAGKILRVDEEGR 179 (354)
T ss_dssp GCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTS-CEEEECCCTTCGGGGTCTTCCSSEEEEECTTSC
T ss_pred CCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCC-cEEEEECCCCCCccccCCCCCCeEEEEEcCCCC
Confidence 56778887644 1 11 11221111234679999999 66665432 245666665432
Q ss_pred C-------ccceEEccCCCCeEEEEEec-CCCEEEE
Q 003822 627 P-------IQPCYTASSSKGNVMVCFSP-DDHYLLV 654 (793)
Q Consensus 627 ~-------~~~~~~l~~~~~~vsv~fSp-dg~~Las 654 (793)
. ...++. .++..+..++|+| +|+..++
T Consensus 180 ~p~~npf~~~~i~a-~G~rnp~Gla~d~~~g~l~v~ 214 (354)
T 3a9g_A 180 PPADNPFPNSPIWS-YGHRNPQGIDWHRASGVMVAT 214 (354)
T ss_dssp CCTTSSSTTCCEEE-ECCSCCCEEEECTTTCCEEEE
T ss_pred CCCCCCCCCCcEEE-EccCCcceEEEeCCCCCEEEE
Confidence 0 112332 3555666799999 5664444
No 392
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=94.90 E-value=0.0064 Score=63.96 Aligned_cols=105 Identities=19% Similarity=0.228 Sum_probs=78.7
Q ss_pred cceeEEeccCCchhhHHHHHhhcCCceeeEeecccccccc---cccccccceeeEEeeccccccccccccccccccccce
Q 003822 100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRK---LNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLIC 176 (793)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (793)
.+|+..+|.++.+....-.. +..=-+=+.|+|+.+++.. -...+.+.+|++|+|.++ .++.+....|..||+|+.
T Consensus 126 ~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~ 203 (306)
T 2z66_A 126 RNLIYLDISHTHTRVAFNGI-FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQV 203 (306)
T ss_dssp TTCCEEECTTSCCEECSTTT-TTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCE
T ss_pred cCCCEEECCCCcCCccchhh-cccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCC-CcCCcCHHHhcCCCCCCE
Confidence 58999999988765432111 1111134789999988875 356778889999999954 789998899999999999
Q ss_pred eccccccchhhhHHHHHHhcCCcccceeccee
Q 003822 177 LSMCETRVGNLWTTIAALSKLPSLAELRFQNW 208 (793)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (793)
|.+-..++..+= ..++.++++|++|.+..+
T Consensus 204 L~L~~N~l~~~~--~~~~~~l~~L~~L~L~~N 233 (306)
T 2z66_A 204 LNMSHNNFFSLD--TFPYKCLNSLQVLDYSLN 233 (306)
T ss_dssp EECTTSCCSBCC--SGGGTTCTTCCEEECTTS
T ss_pred EECCCCccCccC--hhhccCcccCCEeECCCC
Confidence 999887776542 224788999999999876
No 393
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=94.90 E-value=0.012 Score=65.99 Aligned_cols=78 Identities=21% Similarity=0.308 Sum_probs=46.8
Q ss_pred eEeeccccccccc--ccccccceeeEEeeccccccccccccccccccccceeccccccchhhhHHHHHHhcCCcccceec
Q 003822 128 EVLNLRSSRFRKL--NMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELRF 205 (793)
Q Consensus 128 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (793)
+.|+|+.+++..+ ...+...+|.+|+|.. ..++.+....|.-|++|+.|.+-..++..+. ..++.++++|++|++
T Consensus 107 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~l~~L~~L~l 183 (477)
T 2id5_A 107 TKLDISENKIVILLDYMFQDLYNLKSLEVGD-NDLVYISHRAFSGLNSLEQLTLEKCNLTSIP--TEALSHLHGLIVLRL 183 (477)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEEECC-TTCCEECTTSSTTCTTCCEEEEESCCCSSCC--HHHHTTCTTCCEEEE
T ss_pred CEEECCCCccccCChhHccccccCCEEECCC-CccceeChhhccCCCCCCEEECCCCcCcccC--hhHhcccCCCcEEeC
Confidence 5566666665554 2345556666666663 4566666666666666666666666555443 245666677777766
Q ss_pred cee
Q 003822 206 QNW 208 (793)
Q Consensus 206 ~~~ 208 (793)
..+
T Consensus 184 ~~n 186 (477)
T 2id5_A 184 RHL 186 (477)
T ss_dssp ESC
T ss_pred CCC
Confidence 553
No 394
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=94.90 E-value=0.014 Score=65.38 Aligned_cols=98 Identities=16% Similarity=0.265 Sum_probs=72.6
Q ss_pred cceeEEeccCCchhhHHHHHhhcCCceeeEeecccccccccccccccceeeEEeeccccccccccccccccccccceecc
Q 003822 100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSM 179 (793)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (793)
.+||..||+++.+..-. . +..=-.=+.|+|+.+.+..+.-.+.+.+|.+|+|.++ .++.+.. |..+|+|+.|.+
T Consensus 68 ~~L~~L~Ls~n~l~~~~--~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n-~l~~~~~--~~~l~~L~~L~l 141 (466)
T 1o6v_A 68 NNLTQINFSNNQLTDIT--P-LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNN-QITDIDP--LKNLTNLNRLEL 141 (466)
T ss_dssp TTCCEEECCSSCCCCCG--G-GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSS-CCCCCGG--GTTCTTCSEEEE
T ss_pred cCCCEEECCCCccCCch--h-hhccccCCEEECCCCccccChhhcCCCCCCEEECCCC-CCCCChH--HcCCCCCCEEEC
Confidence 57888888887664321 1 1111234678888888888877888889999999865 6888765 888999999988
Q ss_pred ccccchhhhHHHHHHhcCCcccceecce
Q 003822 180 CETRVGNLWTTIAALSKLPSLAELRFQN 207 (793)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (793)
-..++..+ .++.+|++|++|.+.+
T Consensus 142 ~~n~l~~~----~~~~~l~~L~~L~l~~ 165 (466)
T 1o6v_A 142 SSNTISDI----SALSGLTSLQQLSFGN 165 (466)
T ss_dssp EEEEECCC----GGGTTCTTCSEEEEEE
T ss_pred CCCccCCC----hhhccCCcccEeecCC
Confidence 88777764 4688899999998754
No 395
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=94.85 E-value=0.012 Score=59.22 Aligned_cols=103 Identities=15% Similarity=0.204 Sum_probs=78.2
Q ss_pred ccceeEEeccCCchhhH----HHHHhhcCCceeeEeeccccccccccc--ccccceeeEEeecccccccccccccccccc
Q 003822 99 DQKLRVVDLHDSSFGKD----FIRNLSQRGLMCEVLNLRSSRFRKLNM--IGEFKRIHTLNLDYSTSLTSFKEDCFSCMP 172 (793)
Q Consensus 99 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (793)
...++..+|+++.+..- ++..|. .=+.|+|+.+++..+.- .+...+|.+|+|. ...|+.+..+-|..||
T Consensus 31 ~~~~~~L~L~~N~l~~~~~~~~~~~l~----~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls-~N~l~~~~~~~~~~l~ 105 (220)
T 2v70_A 31 PQYTAELRLNNNEFTVLEATGIFKKLP----QLRKINFSNNKITDIEEGAFEGASGVNEILLT-SNRLENVQHKMFKGLE 105 (220)
T ss_dssp CTTCSEEECCSSCCCEECCCCCGGGCT----TCCEEECCSSCCCEECTTTTTTCTTCCEEECC-SSCCCCCCGGGGTTCS
T ss_pred CCCCCEEEcCCCcCCccCchhhhccCC----CCCEEECCCCcCCEECHHHhCCCCCCCEEECC-CCccCccCHhHhcCCc
Confidence 34567888888876432 122222 35789999999988764 6778899999999 4578999999999999
Q ss_pred ccceeccccccchhhhHHHHHHhcCCcccceeccee
Q 003822 173 NLICLSMCETRVGNLWTTIAALSKLPSLAELRFQNW 208 (793)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (793)
+|..|.+-..++..+- ..++.+|++|++|.++.+
T Consensus 106 ~L~~L~Ls~N~l~~~~--~~~~~~l~~L~~L~L~~N 139 (220)
T 2v70_A 106 SLKTLMLRSNRITCVG--NDSFIGLSSVRLLSLYDN 139 (220)
T ss_dssp SCCEEECTTSCCCCBC--TTSSTTCTTCSEEECTTS
T ss_pred CCCEEECCCCcCCeEC--HhHcCCCccCCEEECCCC
Confidence 9999999888876542 246778899999988754
No 396
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=94.84 E-value=4 Score=43.89 Aligned_cols=191 Identities=12% Similarity=0.121 Sum_probs=102.2
Q ss_pred cCCcEEEEEcCCCCCcccccccCCceeEec-CCCCeEEEEEccC--CC-EEEEEE-C--CCcEEEEECCCC-c---EEEE
Q 003822 519 DNGSLKLYDIRHMPPSIRGMHYGAGTVTFD-EFDQLTSVHVNSM--DE-LFLASG-Y--SKNIALYDINSG-R---RLQV 587 (793)
Q Consensus 519 ~DgtV~vWDl~~~~~~~~~~~~~~~~~~~~-~~~~V~sv~~s~~--~~-~lla~g-~--Dg~I~IWDl~tg-~---~l~~ 587 (793)
.+|.|.++|..+.......+.-... .+. ..-....+.+.++ +. +++++. . +.+|.+|++..+ . .+.+
T Consensus 81 ~~G~I~~~d~~~~~~~~~~l~~~g~--~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~ 158 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAVSELEIIGN--TLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKT 158 (355)
T ss_dssp -CCEEEEEETTSSSCCEEECEEECS--SCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEE
T ss_pred CCCeEEEEecCCCCCceEEEEccCC--CCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEec
Confidence 6889999998753222111110000 000 1124667777552 33 455553 2 467888877653 2 2334
Q ss_pred EcccCCCCeEEEEEcCCCCcEEEEEeC-----------------CCeEEEEECCCCCccceEEccCCCCeEEEEEecCCC
Q 003822 588 FADMHKEHINVVKFSNHSPSIFATSSF-----------------DQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDH 650 (793)
Q Consensus 588 ~~~gh~~~V~sv~fspdg~~~LaTgs~-----------------Dg~IrIWDlrt~~~~~~~~l~~~~~~vsv~fSpdg~ 650 (793)
+....-...+.+.+.++| .++++... .|.|.-+|. ++... ...+-..+..++|+|||+
T Consensus 159 ~~g~~~~~pND~~v~~~G-~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~~~~--~~~~l~~pNGia~spDg~ 233 (355)
T 3sre_A 159 IRHKLLPSVNDIVAVGPE-HFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--NDVRV--VAEGFDFANGINISPDGK 233 (355)
T ss_dssp ECCTTCSSEEEEEEEETT-EEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TCCEE--EEEEESSEEEEEECTTSS
T ss_pred cccCCCCCCceEEEeCCC-CEEecCCcEeCCcccccchhhccCCccEEEEEEC--CeEEE--eecCCcccCcceECCCCC
Confidence 442223467899999998 67776541 244555554 32222 222223445699999999
Q ss_pred EEEEEe-CCCeEEEEEcCC-CcEEEEEeeecCCCCCcEEEEEee-CCCeEEEEEeCCC-cEEEEEEcC--CCcEEE
Q 003822 651 YLLVSA-VDNEVRQLLAVD-GRVHLNFGITATGSSQNYTRSYYL-NGRDYIVSGSCDE-HVVRICCAQ--TGRRLR 720 (793)
Q Consensus 651 ~Lasgs-~Dg~I~IwDl~t-g~~~~~l~~~~~~~~~v~s~afsp-dg~~~L~Sgs~Dg-~II~IWDv~--tg~~l~ 720 (793)
.|+++. ..+.|..|++.. |+....-.+ ......-.++..+ +|. +.+++..++ .| ..|+.. .+..+.
T Consensus 234 ~lYvadt~~~~I~~~~~~~~g~l~~~~~~--~~~g~PDGi~vD~e~G~-lwva~~~~g~~v-~~~~P~~~~~s~v~ 305 (355)
T 3sre_A 234 YVYIAELLAHKIHVYEKHANWTLTPLRVL--SFDTLVDNISVDPVTGD-LWVGCHPNGMRI-FFYDAENPPGSEVL 305 (355)
T ss_dssp EEEEEEGGGTEEEEEEECTTSCEEEEEEE--ECSSEEEEEEECTTTCC-EEEEEESCHHHH-HSCCTTSCCCEEEE
T ss_pred EEEEEeCCCCeEEEEEECCCCcEecCEEE--eCCCCCceEEEeCCCCc-EEEEecCCceEE-EEECCCCCCCCEEE
Confidence 888776 468999999863 443221111 1123455677777 477 555454443 44 444433 244444
No 397
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=94.78 E-value=0.012 Score=56.68 Aligned_cols=79 Identities=22% Similarity=0.383 Sum_probs=60.2
Q ss_pred eeEeeccccccccccc--ccccceeeEEeeccccccccccccccccccccceeccccccchhhhHHHHHHhcCCccccee
Q 003822 127 CEVLNLRSSRFRKLNM--IGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELR 204 (793)
Q Consensus 127 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (793)
=+.|+|+.+++..+.. .+.+.+|.+|+|.++ .|+.+...-|.-|++|+.|.+-..++..+ ...++.++++|++|.
T Consensus 30 l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~--~~~~~~~l~~L~~L~ 106 (177)
T 2o6r_A 30 ATRLELESNKLQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHENKLQSL--PNGVFDKLTQLKELA 106 (177)
T ss_dssp CSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCC--CTTTTTTCTTCCEEE
T ss_pred CcEEEeCCCcccEeCHHHhcCcccccEEECCCC-cceEeChhHccCCCccCEEECCCCCcccc--CHHHhhCCcccCEEE
Confidence 3688888888887654 467788889998854 78888888888889998888877776643 123467888888888
Q ss_pred ccee
Q 003822 205 FQNW 208 (793)
Q Consensus 205 ~~~~ 208 (793)
+..+
T Consensus 107 l~~N 110 (177)
T 2o6r_A 107 LDTN 110 (177)
T ss_dssp CCSS
T ss_pred CcCC
Confidence 8764
No 398
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=94.77 E-value=0.019 Score=60.73 Aligned_cols=99 Identities=18% Similarity=0.296 Sum_probs=64.5
Q ss_pred cceeEEeccCCchhh--HHHHHhhcCCceeeEeecccccccccc---cccccceeeEEeecccccccccccccccccccc
Q 003822 100 QKLRVVDLHDSSFGK--DFIRNLSQRGLMCEVLNLRSSRFRKLN---MIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNL 174 (793)
Q Consensus 100 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (793)
.+|+..+|+++.+.. .....++..--.=+.|+|+.+++.... ..+...+|++|+|.+ ..|+.++..-| ++|
T Consensus 201 ~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~-N~l~~ip~~~~---~~L 276 (312)
T 1wwl_A 201 PTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSF-TGLKQVPKGLP---AKL 276 (312)
T ss_dssp TTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTT-SCCSSCCSSCC---SEE
T ss_pred CCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCC-CccChhhhhcc---CCc
Confidence 567777777777652 444455444345567777777777643 333346778888874 45777776555 778
Q ss_pred ceeccccccchhhhHHHHHHhcCCcccceecc
Q 003822 175 ICLSMCETRVGNLWTTIAALSKLPSLAELRFQ 206 (793)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (793)
+.|++-..++..+ ..+.+||+|++|.+.
T Consensus 277 ~~L~Ls~N~l~~~----p~~~~l~~L~~L~L~ 304 (312)
T 1wwl_A 277 SVLDLSYNRLDRN----PSPDELPQVGNLSLK 304 (312)
T ss_dssp EEEECCSSCCCSC----CCTTTSCEEEEEECT
T ss_pred eEEECCCCCCCCC----hhHhhCCCCCEEecc
Confidence 8877777777666 226777888777764
No 399
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=94.75 E-value=0.99 Score=56.72 Aligned_cols=221 Identities=9% Similarity=0.102 Sum_probs=122.8
Q ss_pred CCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcccccccCCceeEecCCCCeE
Q 003822 475 DGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLT 554 (793)
Q Consensus 475 DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~ 554 (793)
..+|.|.|+.++..+...+. ...+.|. + |..+.+|.-. ..++.|+|+++.... ..+....+|.
T Consensus 47 ~~~vvIidl~~~~~~~rrpi-~AdsAIM----n-P~~~iiALra-g~~lQiFnl~~k~kl----------ks~~~~e~Vv 109 (1630)
T 1xi4_A 47 QAQVVIIDMNDPSNPIRRPI-SADSAIM----N-PASKVIALKA-GKTLQIFNIEMKSKM----------KAHTMTDDVT 109 (1630)
T ss_pred CceEEEEECCCCCCcccccc-cchhhcc----C-CCcceEEEec-CCeEEEeehHHhhhh----------cccccCCCce
Confidence 44799999988765433322 2223332 4 4555555554 679999999986541 1122224455
Q ss_pred EEEEccCCCEEEEEECCCcEEEEECCC-CcEEEEEcccC----CCCeEEEEEcCCCCcEEEEEe------CCCeEEEEEC
Q 003822 555 SVHVNSMDELFLASGYSKNIALYDINS-GRRLQVFADMH----KEHINVVKFSNHSPSIFATSS------FDQDVKLWDL 623 (793)
Q Consensus 555 sv~~s~~~~~lla~g~Dg~I~IWDl~t-g~~l~~~~~gh----~~~V~sv~fspdg~~~LaTgs------~Dg~IrIWDl 623 (793)
--.|-++...-++ .+..|+.|++.. ..+++.|.. | ...|..-..+++....+++|- -.|.+.+|..
T Consensus 110 fWkWis~~~l~lV--T~~aVyHW~~~~~s~P~k~fdR-~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~ 186 (1630)
T 1xi4_A 110 FWKWISLNTVALV--TDNAVYHWSMEGESQPVKMFDR-HSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSV 186 (1630)
T ss_pred EEEecCCCeeEEE--cCCeEEEeccCCCCccHHHHhc-chhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeec
Confidence 5666443333333 357899999974 345555542 3 345666677777733333433 3578999988
Q ss_pred CCCCccceEEccCCCCeEE-EEE--ecCCCEEEE-EeC---CCeEEEEEcCCC---cE-----EEEEeeec-CCCCCcEE
Q 003822 624 RQKPIQPCYTASSSKGNVM-VCF--SPDDHYLLV-SAV---DNEVRQLLAVDG---RV-----HLNFGITA-TGSSQNYT 687 (793)
Q Consensus 624 rt~~~~~~~~l~~~~~~vs-v~f--Spdg~~Las-gs~---Dg~I~IwDl~tg---~~-----~~~l~~~~-~~~~~v~s 687 (793)
..+..+ .+.||.+... +.. .+....|++ +.. .+.++|.++... .. ...+.+.+ ......+.
T Consensus 187 er~~sQ---~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~ 263 (1630)
T 1xi4_A 187 DRKVSQ---PIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVA 263 (1630)
T ss_pred ccccch---hhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceE
Confidence 775332 2233332221 111 111122222 111 268888887543 11 11111111 12344556
Q ss_pred EEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEE
Q 003822 688 RSYYLNGRDYIVSGSCDEHVVRICCAQTGRRLR 720 (793)
Q Consensus 688 ~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~ 720 (793)
+..++.-+ .+...+.-|.+ .++|+.||..+.
T Consensus 264 ~~vs~k~g-~iy~itk~G~~-~~~d~~t~~~i~ 294 (1630)
T 1xi4_A 264 MQISEKHD-VVFLITKYGYI-HLYDLETGTCIY 294 (1630)
T ss_pred EEeccccC-EEEEEecCceE-EEEecccchhhh
Confidence 66677666 77777888999 999999999887
No 400
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=94.73 E-value=0.0097 Score=64.96 Aligned_cols=129 Identities=17% Similarity=0.223 Sum_probs=81.4
Q ss_pred cCCCcceeEEeecCCccccchHHHHHHHHHhccceeEEeccCCchhhH---HHHHhhcCCceeeEeecccccccccc--c
Q 003822 68 IGATEIEAVDVRSGTSCMLTGEFALSLMHAIDQKLRVVDLHDSSFGKD---FIRNLSQRGLMCEVLNLRSSRFRKLN--M 142 (793)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 142 (793)
+.-+.+..+|+.+..-..+.... +.. -.+||..+|.++.+..- .+..+ -.=+.|+|+.+++..+. .
T Consensus 42 ~~l~~l~~l~l~~~~l~~l~~~~----~~~-l~~L~~L~L~~n~i~~~~~~~~~~l----~~L~~L~L~~n~l~~~~~~~ 112 (390)
T 3o6n_A 42 ITLNNQKIVTFKNSTMRKLPAAL----LDS-FRQVELLNLNDLQIEEIDTYAFAYA----HTIQKLYMGFNAIRYLPPHV 112 (390)
T ss_dssp GGGCCCSEEEEESCEESEECTHH----HHH-CCCCSEEECTTSCCCEECTTTTTTC----TTCCEEECCSSCCCCCCTTT
T ss_pred cccCCceEEEecCCchhhCChhH----hcc-cccCcEEECCCCcccccChhhccCC----CCcCEEECCCCCCCcCCHHH
Confidence 34456667777554443443322 111 24688888887765431 11111 13467888888877763 3
Q ss_pred ccccceeeEEeeccccccccccccccccccccceeccccccchhhhHHHHHHhcCCcccceeccee
Q 003822 143 IGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELRFQNW 208 (793)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (793)
.+.+.+|.+|+|.++ .|+.++..-|..||+|+.|++-..++..+- ..++.++++|++|.+..+
T Consensus 113 ~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~l~~n 175 (390)
T 3o6n_A 113 FQNVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERIE--DDTFQATTSLQNLQLSSN 175 (390)
T ss_dssp TTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBCC--TTTTSSCTTCCEEECCSS
T ss_pred hcCCCCCCEEECCCC-ccCcCCHHHhcCCCCCcEEECCCCccCccC--hhhccCCCCCCEEECCCC
Confidence 567788888888854 778888888888888888887777665431 235677888888877654
No 401
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=94.67 E-value=0.01 Score=61.39 Aligned_cols=75 Identities=21% Similarity=0.366 Sum_probs=33.1
Q ss_pred Eeecccccccccc--cccccceeeEEeeccccccccccccccccccccceeccccccchhhhHHHHHHhcCCcccceecc
Q 003822 129 VLNLRSSRFRKLN--MIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELRFQ 206 (793)
Q Consensus 129 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (793)
.|+|+.+++..+. ..+.+.+|++|+|.++ .|+.+..+.|..+++|+.|.+-..++..+ ...++.+|++|++|.+.
T Consensus 32 ~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 32 NLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSL--ALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp EEECTTCCCCEECTTTTTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCEE--CTTTTTTCTTCCEEECT
T ss_pred EEECCCCcccccCHhHhccccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCCccCcc--ChhhhcCCccccEEECC
Confidence 3444444444333 2334444555555433 44444444455555555554444443332 11234444555555443
No 402
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=94.67 E-value=0.0087 Score=69.35 Aligned_cols=81 Identities=19% Similarity=0.251 Sum_probs=45.9
Q ss_pred eEeeccccccccc--ccccccceeeEEeeccccccccccccccccccccceeccccccchhhhHHHHHHhcCCcccceec
Q 003822 128 EVLNLRSSRFRKL--NMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELRF 205 (793)
Q Consensus 128 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (793)
+.|+|+.+++..+ ...+.+++|.+|+|..+.-.+.++..+|..||+|+.|.+-..++..+.....++.++++|++|.+
T Consensus 304 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l 383 (606)
T 3t6q_A 304 KKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNL 383 (606)
T ss_dssp CEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEEC
T ss_pred CEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEEC
Confidence 4555655555554 33455666666666655444456666666666666666665555444322345566666666666
Q ss_pred cee
Q 003822 206 QNW 208 (793)
Q Consensus 206 ~~~ 208 (793)
..|
T Consensus 384 ~~n 386 (606)
T 3t6q_A 384 SYN 386 (606)
T ss_dssp CSC
T ss_pred CCC
Confidence 544
No 403
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=94.65 E-value=0.0089 Score=69.23 Aligned_cols=90 Identities=18% Similarity=0.268 Sum_probs=72.0
Q ss_pred chhhHHHHHhhcCCceeeEeecccccccccccccccceeeEEeeccccccccccccccccccccceeccccccchhhhHH
Q 003822 111 SFGKDFIRNLSQRGLMCEVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTT 190 (793)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (793)
.++.+-+..+.... -+.|+|+.+++..+.-.|.+.+|.+|+|.+ ..|+.|+. .|..||+|+.|++-..++..|
T Consensus 429 ~l~~n~i~~l~~~~--L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~-N~l~~lp~-~~~~l~~L~~L~Ls~N~l~~l--- 501 (567)
T 1dce_A 429 FLLENSVLKMEYAD--VRVLHLAHKDLTVLCHLEQLLLVTHLDLSH-NRLRALPP-ALAALRCLEVLQASDNALENV--- 501 (567)
T ss_dssp HHHHHHHHHHHHTT--CSEEECTTSCCSSCCCGGGGTTCCEEECCS-SCCCCCCG-GGGGCTTCCEEECCSSCCCCC---
T ss_pred hhhcccccccCccC--ceEEEecCCCCCCCcCccccccCcEeecCc-ccccccch-hhhcCCCCCEEECCCCCCCCC---
Confidence 33444444444333 468999999999988789999999999995 57888876 899999999999999888875
Q ss_pred HHHHhcCCcccceeccee
Q 003822 191 IAALSKLPSLAELRFQNW 208 (793)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~ 208 (793)
.++.+|++|++|....+
T Consensus 502 -p~l~~l~~L~~L~Ls~N 518 (567)
T 1dce_A 502 -DGVANLPRLQELLLCNN 518 (567)
T ss_dssp -GGGTTCSSCCEEECCSS
T ss_pred -cccCCCCCCcEEECCCC
Confidence 37999999999988764
No 404
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=94.54 E-value=1.2 Score=47.19 Aligned_cols=239 Identities=9% Similarity=0.007 Sum_probs=111.6
Q ss_pred CCCEEEEEeCC-CeEEEEECCC--CeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEc-C---------CcEEEEEcCCC
Q 003822 465 ISCLMVFGTLD-GEIVVVNHEN--ENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSD-N---------GSLKLYDIRHM 531 (793)
Q Consensus 465 d~~~Lasgs~D-G~I~VWd~~t--~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~-D---------gtV~vWDl~~~ 531 (793)
++.+++.|+.+ ..+.+||..+ .+....-........-.+++. .++.+++.|+. + ..+.+||..+.
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~ 96 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAF--IDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN 96 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEE--ETTEEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEE--ECCEEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence 45677777643 4688999864 443322211101111122232 25667777765 2 45888888775
Q ss_pred CCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEECC---------------------------------------C
Q 003822 532 PPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYS---------------------------------------K 572 (793)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~D---------------------------------------g 572 (793)
+-. ...... ........++. ..+..++.||.+ .
T Consensus 97 ~W~--~~~~~~----p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (357)
T 2uvk_A 97 SWV--KLMSHA----PMGMAGHVTFV--HNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNK 168 (357)
T ss_dssp EEE--ECSCCC----SSCCSSEEEEE--ETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCC
T ss_pred cEE--ECCCCC----CcccccceEEE--ECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcc
Confidence 421 111100 00001112222 355666666643 5
Q ss_pred cEEEEECCCCcEEEEEcccCCCCe-EEEEEcCCCCcEEEEEeC------CCeEEEEEC--CCCCccceEEccCCCCeE-E
Q 003822 573 NIALYDINSGRRLQVFADMHKEHI-NVVKFSNHSPSIFATSSF------DQDVKLWDL--RQKPIQPCYTASSSKGNV-M 642 (793)
Q Consensus 573 ~I~IWDl~tg~~l~~~~~gh~~~V-~sv~fspdg~~~LaTgs~------Dg~IrIWDl--rt~~~~~~~~l~~~~~~v-s 642 (793)
.+.+||..+.+-...-.......- .+++.. ++ .+++.|+. ...+.+||+ .+.....+..++...... .
T Consensus 169 ~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~-~~-~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~ 246 (357)
T 2uvk_A 169 FLLSFDPSTQQWSYAGESPWYGTAGAAVVNK-GD-KTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGG 246 (357)
T ss_dssp EEEEEETTTTEEEEEEECSSCCCBSCEEEEE-TT-EEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSC
T ss_pred cEEEEeCCCCcEEECCCCCCCCcccccEEEE-CC-EEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccc
Confidence 799999988654332211111111 223332 44 67777764 235777887 443322222221111111 1
Q ss_pred EEEecCCCEEEEEeCC----------------------CeEEEEEcCCCcEEEEEeeecCCCCCcEEEEEeeCCCeEEEE
Q 003822 643 VCFSPDDHYLLVSAVD----------------------NEVRQLLAVDGRVHLNFGITATGSSQNYTRSYYLNGRDYIVS 700 (793)
Q Consensus 643 v~fSpdg~~Lasgs~D----------------------g~I~IwDl~tg~~~~~l~~~~~~~~~v~s~afspdg~~~L~S 700 (793)
.+...+++.++.|+.+ ..+.+||+.+.+.... ...+..... ..+...+++ +++.
T Consensus 247 ~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~-~~~p~~r~~--~~~~~~~~~-i~v~ 322 (357)
T 2uvk_A 247 FAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKS-GELSQGRAY--GVSLPWNNS-LLII 322 (357)
T ss_dssp EEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEE-EECSSCCBS--SEEEEETTE-EEEE
T ss_pred eEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeC-CCCCCCccc--ceeEEeCCE-EEEE
Confidence 1233356666666632 2577899887654332 211222221 223345666 6666
Q ss_pred EeCCC------cEEEEEEcCCCcEEE
Q 003822 701 GSCDE------HVVRICCAQTGRRLR 720 (793)
Q Consensus 701 gs~Dg------~II~IWDv~tg~~l~ 720 (793)
|+.++ .+ .++++++++.+.
T Consensus 323 GG~~~~~~~~~~v-~~l~~~~~~~~~ 347 (357)
T 2uvk_A 323 GGETAGGKAVTDS-VLITVKDNKVTV 347 (357)
T ss_dssp EEECGGGCEEEEE-EEEEC-CCSCEE
T ss_pred eeeCCCCCEeeeE-EEEEEcCcEeEe
Confidence 76543 23 556888888776
No 405
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=94.54 E-value=0.017 Score=66.78 Aligned_cols=104 Identities=22% Similarity=0.350 Sum_probs=78.2
Q ss_pred cceeEEeccCCchhhHHHHHhhcCCceeeEeeccccccccc-ccccccceeeEEeeccccccccccccccccccccceec
Q 003822 100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKL-NMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLS 178 (793)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (793)
..||.++|..+.+.. +.++ ..=-+=+.|+|+.+++..+ .-.|.+.+|.+|+|.+ +.|++++ -|..||+|..|+
T Consensus 441 ~~L~~L~Ls~n~l~~--lp~~-~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~-N~l~~lp--~l~~l~~L~~L~ 514 (567)
T 1dce_A 441 ADVRVLHLAHKDLTV--LCHL-EQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASD-NALENVD--GVANLPRLQELL 514 (567)
T ss_dssp TTCSEEECTTSCCSS--CCCG-GGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCS-SCCCCCG--GGTTCSSCCEEE
T ss_pred cCceEEEecCCCCCC--CcCc-cccccCcEeecCcccccccchhhhcCCCCCEEECCC-CCCCCCc--ccCCCCCCcEEE
Confidence 368999999987653 2221 1111347899999999977 5678889999999995 5788887 699999999999
Q ss_pred cccccchhhhHHHHHHhcCCcccceecceeee
Q 003822 179 MCETRVGNLWTTIAALSKLPSLAELRFQNWLC 210 (793)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (793)
+-..++..+= ...++.+|++|++|.+..+.-
T Consensus 515 Ls~N~l~~~~-~p~~l~~l~~L~~L~L~~N~l 545 (567)
T 1dce_A 515 LCNNRLQQSA-AIQPLVSCPRLVLLNLQGNSL 545 (567)
T ss_dssp CCSSCCCSSS-TTGGGGGCTTCCEEECTTSGG
T ss_pred CCCCCCCCCC-CcHHHhcCCCCCEEEecCCcC
Confidence 9888776541 035678899999999887643
No 406
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=94.53 E-value=0.012 Score=65.88 Aligned_cols=78 Identities=18% Similarity=0.255 Sum_probs=53.7
Q ss_pred eEeecccccccccccccccceeeEEeeccccccccccccccccccccceeccccccchhhhHHHHHHhcCCcccceecce
Q 003822 128 EVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELRFQN 207 (793)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (793)
+.|+|+.+++..+.-.+.+.+|.+|+|.+ ..++.+....|..||+|..|.+-..++..+- ..++.+|++|++|.+..
T Consensus 199 ~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~ 275 (452)
T 3zyi_A 199 KYLNLGMCNIKDMPNLTPLVGLEELEMSG-NHFPEIRPGSFHGLSSLKKLWVMNSQVSLIE--RNAFDGLASLVELNLAH 275 (452)
T ss_dssp CEEECTTSCCSSCCCCTTCTTCCEEECTT-SCCSEECGGGGTTCTTCCEEECTTSCCCEEC--TTTTTTCTTCCEEECCS
T ss_pred CEEECCCCcccccccccccccccEEECcC-CcCcccCcccccCccCCCEEEeCCCcCceEC--HHHhcCCCCCCEEECCC
Confidence 56777777777776667777777777774 4677777777777777777777666665432 24567777777777765
Q ss_pred e
Q 003822 208 W 208 (793)
Q Consensus 208 ~ 208 (793)
+
T Consensus 276 N 276 (452)
T 3zyi_A 276 N 276 (452)
T ss_dssp S
T ss_pred C
Confidence 4
No 407
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=94.51 E-value=0.022 Score=63.83 Aligned_cols=99 Identities=18% Similarity=0.236 Sum_probs=72.2
Q ss_pred cceeEEeccCCchhhHHHHHhhcCCceeeEeecccccccccccccccceeeEEeeccccccccccccccccccccceecc
Q 003822 100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSM 179 (793)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (793)
.+|+..+|.++.+..-.- +..=-+=+.|+|+.+++..+...+.+.+|.+|+|..+ .++.+.. |..||+|+.|..
T Consensus 243 ~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n-~l~~~~~--~~~l~~L~~L~L 316 (466)
T 1o6v_A 243 TNLTDLDLANNQISNLAP---LSGLTKLTELKLGANQISNISPLAGLTALTNLELNEN-QLEDISP--ISNLKNLTYLTL 316 (466)
T ss_dssp TTCSEEECCSSCCCCCGG---GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSS-CCSCCGG--GGGCTTCSEEEC
T ss_pred CCCCEEECCCCccccchh---hhcCCCCCEEECCCCccCccccccCCCccCeEEcCCC-cccCchh--hcCCCCCCEEEC
Confidence 578999998876643221 1111234678888888888877888889999999854 5777665 888899998888
Q ss_pred ccccchhhhHHHHHHhcCCcccceeccee
Q 003822 180 CETRVGNLWTTIAALSKLPSLAELRFQNW 208 (793)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (793)
-..++..+= .+..+++|++|.+..|
T Consensus 317 ~~n~l~~~~----~~~~l~~L~~L~l~~n 341 (466)
T 1o6v_A 317 YFNNISDIS----PVSSLTKLQRLFFYNN 341 (466)
T ss_dssp CSSCCSCCG----GGGGCTTCCEEECCSS
T ss_pred cCCcCCCch----hhccCccCCEeECCCC
Confidence 877766542 3778888888888765
No 408
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=94.50 E-value=0.012 Score=62.39 Aligned_cols=122 Identities=17% Similarity=0.242 Sum_probs=74.4
Q ss_pred cchHHHHHHHHHhc-cceeEEeccCCchhhHHHHHhhcCC-ceeeEeecccccccccc-ccccc-----ceeeEEeeccc
Q 003822 86 LTGEFALSLMHAID-QKLRVVDLHDSSFGKDFIRNLSQRG-LMCEVLNLRSSRFRKLN-MIGEF-----KRIHTLNLDYS 157 (793)
Q Consensus 86 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~-----~~~~~~~~~~~ 157 (793)
+.++.....++..+ .+|+.++|.++.+....-..++..+ -+=+.|+|+.+++..+. ..+.. ++|.+|+|.+
T Consensus 80 ~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~- 158 (312)
T 1wwl_A 80 IPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQ- 158 (312)
T ss_dssp CBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEES-
T ss_pred cCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeC-
Confidence 34444444444433 5788888888776543322222122 23467888877776651 12233 6788888884
Q ss_pred cccccccccccccccccceeccccccchhhhHHHHHH--hcCCcccceeccee
Q 003822 158 TSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAAL--SKLPSLAELRFQNW 208 (793)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 208 (793)
..|+.+..+-|..||+|+.|.+-..++..--....++ .++++|++|.++.|
T Consensus 159 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N 211 (312)
T 1wwl_A 159 AHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNA 211 (312)
T ss_dssp CSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTS
T ss_pred CCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCC
Confidence 4678888788888888888888777643322223344 78888888887754
No 409
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=94.38 E-value=0.017 Score=65.45 Aligned_cols=103 Identities=17% Similarity=0.210 Sum_probs=54.2
Q ss_pred cceeEEeccCCchhhHHHHHhhcCCceeeEeecccccccccccccccceeeEEeeccccccccccccccccccccceecc
Q 003822 100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSM 179 (793)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (793)
.+|+..||.++.+.......+...=-+=+.|+|+.++|..+.-.+.+++|.+|+|.+ ..|+.++.+ |..+|+|..|++
T Consensus 144 ~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~-~~~l~~L~~L~L 221 (487)
T 3oja_A 144 SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSS-NKLAFMGPE-FQSAAGVTWISL 221 (487)
T ss_dssp SSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCS-SCCCEECGG-GGGGTTCSEEEC
T ss_pred CCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccccccCCCCCEEECCC-CCCCCCCHh-HcCCCCccEEEe
Confidence 456666666655543222222211112355666666665555444556666666663 346666555 666666666666
Q ss_pred ccccchhhhHHHHHHhcCCcccceecce
Q 003822 180 CETRVGNLWTTIAALSKLPSLAELRFQN 207 (793)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (793)
...++..+ ..++..+|+|..|.+..
T Consensus 222 s~N~l~~l---p~~l~~l~~L~~L~l~~ 246 (487)
T 3oja_A 222 RNNKLVLI---EKALRFSQNLEHFDLRG 246 (487)
T ss_dssp TTSCCCEE---CTTCCCCTTCCEEECTT
T ss_pred cCCcCccc---chhhccCCCCCEEEcCC
Confidence 66555532 22355556666665554
No 410
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=94.36 E-value=0.02 Score=62.40 Aligned_cols=102 Identities=18% Similarity=0.354 Sum_probs=80.5
Q ss_pred cceeEEeccCCchh---hHHHHHhhcCCceeeEeecccccccccc--cccccceeeEEeecccccccccccccccccccc
Q 003822 100 QKLRVVDLHDSSFG---KDFIRNLSQRGLMCEVLNLRSSRFRKLN--MIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNL 174 (793)
Q Consensus 100 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (793)
.+||+++|+++.++ .+++..+.+ =++|+|+.+++..+. ..+.+.+|.+|+|.++ .|+.+..+.|..||+|
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~~----L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L 119 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFRQ----VELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLL 119 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCCC----CSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTC
T ss_pred CCceEEEecCCchhhCChhHhccccc----CcEEECCCCcccccChhhccCCCCcCEEECCCC-CCCcCCHHHhcCCCCC
Confidence 57889999887654 344555433 578999999998874 5688899999999965 6999999999999999
Q ss_pred ceeccccccchhhhHHHHHHhcCCcccceeccee
Q 003822 175 ICLSMCETRVGNLWTTIAALSKLPSLAELRFQNW 208 (793)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (793)
+.|.+-..++..+-. .++.++++|++|.+..+
T Consensus 120 ~~L~L~~n~l~~l~~--~~~~~l~~L~~L~L~~n 151 (390)
T 3o6n_A 120 TVLVLERNDLSSLPR--GIFHNTPKLTTLSMSNN 151 (390)
T ss_dssp CEEECCSSCCCCCCT--TTTTTCTTCCEEECCSS
T ss_pred CEEECCCCccCcCCH--HHhcCCCCCcEEECCCC
Confidence 999998888875432 23688999999998765
No 411
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=94.34 E-value=0.015 Score=67.09 Aligned_cols=102 Identities=20% Similarity=0.220 Sum_probs=68.8
Q ss_pred cceeEEeccCCchhh---HHHHHhhcCCceeeEeecccccccccc--cccccceeeEEeecccccccccccccccccccc
Q 003822 100 QKLRVVDLHDSSFGK---DFIRNLSQRGLMCEVLNLRSSRFRKLN--MIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNL 174 (793)
Q Consensus 100 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (793)
..+|..||+.+.+-+ +.+..|. .=++|+|+.+.++.+. ..+...+|++|+|.++ .|+.++.+.|.-|++|
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~----~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N-~l~~l~~~~f~~L~~L 126 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFP----ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSL 126 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCT----TCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECGGGGTTCTTC
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCC----CCCEEECCCCcCCCcChhHhcCCCCCCEEEccCC-cCCCCCHHHhcCCCCC
Confidence 357788888765431 1122221 2478888888887764 2455677888888854 6888888888888888
Q ss_pred ceeccccccchhhhHHHHHHhcCCcccceeccee
Q 003822 175 ICLSMCETRVGNLWTTIAALSKLPSLAELRFQNW 208 (793)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (793)
+.|.+-..++..+= ..++.+|++|++|.+..+
T Consensus 127 ~~L~Ls~N~l~~l~--~~~~~~L~~L~~L~Ls~N 158 (635)
T 4g8a_A 127 QKLVAVETNLASLE--NFPIGHLKTLKELNVAHN 158 (635)
T ss_dssp CEEECTTSCCCCST--TCCCTTCTTCCEEECCSS
T ss_pred CEEECCCCcCCCCC--hhhhhcCcccCeeccccC
Confidence 88888777665542 234678888888877654
No 412
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=94.30 E-value=2.5 Score=43.90 Aligned_cols=192 Identities=12% Similarity=0.139 Sum_probs=97.7
Q ss_pred CCCEEEEEeC-----C------CeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcC--------CcEEE
Q 003822 465 ISCLMVFGTL-----D------GEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDN--------GSLKL 525 (793)
Q Consensus 465 d~~~Lasgs~-----D------G~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~D--------gtV~v 525 (793)
++.+++.|+. . ..+.+||..+++....-........ .+++. .++..++.|+.+ ..+.+
T Consensus 45 ~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~--~~~~lyv~GG~~~~~~~~~~~~~~~ 121 (315)
T 4asc_A 45 ENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCL-FGLGE--ALNSIYVVGGREIKDGERCLDSVMC 121 (315)
T ss_dssp TCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEES-CEEEE--ETTEEEEECCEESSTTCCBCCCEEE
T ss_pred CCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhc-eeEEE--ECCEEEEEeCCcCCCCCcccceEEE
Confidence 6678888883 1 1278889988765432221111111 12222 256667777642 45888
Q ss_pred EEcCCCCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEEC-C-----CcEEEEECCCCcEEEEEcccC-CCCeEE
Q 003822 526 YDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY-S-----KNIALYDINSGRRLQVFADMH-KEHINV 598 (793)
Q Consensus 526 WDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~-D-----g~I~IWDl~tg~~l~~~~~gh-~~~V~s 598 (793)
||..+.+- ........ .. .....+. ..+..++.||. + ..+.+||+.+.+-...-.-.. .....+
T Consensus 122 ~d~~~~~W--~~~~~~p~-~r----~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~ 192 (315)
T 4asc_A 122 YDRLSFKW--GESDPLPY-VV----YGHTVLS--HMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGA 192 (315)
T ss_dssp EETTTTEE--EECCCCSS-CC----BSCEEEE--ETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEE
T ss_pred ECCCCCcE--eECCCCCC-cc----cceeEEE--ECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEE
Confidence 88877532 11111000 00 1111222 24556666664 2 568999998765433211001 111122
Q ss_pred EEEcCCCCcEEEEEeCCC-----eEEEEECCCCCccceEEccCCCCeEEEEEecCCCEEEEEeCC--------------C
Q 003822 599 VKFSNHSPSIFATSSFDQ-----DVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLVSAVD--------------N 659 (793)
Q Consensus 599 v~fspdg~~~LaTgs~Dg-----~IrIWDlrt~~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs~D--------------g 659 (793)
+.+ ++ .+++.|+.++ .+.+||+.+.....+...+......+++. -+++.++.|+.+ +
T Consensus 193 ~~~--~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~l~v~GG~~~~~~~~~~~~~~~~~ 268 (315)
T 4asc_A 193 TVH--DG-RIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVS-LVGTLYAIGGFATLETESGELVPTELN 268 (315)
T ss_dssp EEE--TT-EEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEEEEEEEEECTTSCEEEEEEE
T ss_pred EEE--CC-EEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccceeEEE-ECCEEEEECCccccCcCCccccccccC
Confidence 333 44 7888887654 48899998865443332222221112222 256777777653 2
Q ss_pred eEEEEEcCCCcEE
Q 003822 660 EVRQLLAVDGRVH 672 (793)
Q Consensus 660 ~I~IwDl~tg~~~ 672 (793)
.+.+||+.+.+-.
T Consensus 269 ~v~~yd~~~~~W~ 281 (315)
T 4asc_A 269 DIWRYNEEEKKWE 281 (315)
T ss_dssp EEEEEETTTTEEE
T ss_pred cEEEecCCCChhh
Confidence 4678888777553
No 413
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=94.26 E-value=0.017 Score=60.60 Aligned_cols=76 Identities=18% Similarity=0.298 Sum_probs=33.7
Q ss_pred eEeeccccccccccc-ccccceeeEEeeccccccccccccccccccccceeccccccchhhhHHHHHHhcCCcccceecc
Q 003822 128 EVLNLRSSRFRKLNM-IGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELRFQ 206 (793)
Q Consensus 128 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (793)
+.|+|+.+++..+.- .+.+++|.+|+|.+ ..|+.+..+.|..|++|+.|.+-..++..+ ...++.++++|++|.+.
T Consensus 80 ~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~-N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~--~~~~~~~l~~L~~L~L~ 156 (290)
T 1p9a_G 80 GTLDLSHNQLQSLPLLGQTLPALTVLDVSF-NRLTSLPLGALRGLGELQELYLKGNELKTL--PPGLLTPTPKLEKLSLA 156 (290)
T ss_dssp CEEECCSSCCSSCCCCTTTCTTCCEEECCS-SCCCCCCSSTTTTCTTCCEEECTTSCCCCC--CTTTTTTCTTCCEEECT
T ss_pred CEEECCCCcCCcCchhhccCCCCCEEECCC-CcCcccCHHHHcCCCCCCEEECCCCCCCcc--ChhhcccccCCCEEECC
Confidence 344444444443322 23344455555542 344555555555555555555544444322 11223445555555443
No 414
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=94.24 E-value=0.015 Score=67.51 Aligned_cols=131 Identities=17% Similarity=0.200 Sum_probs=78.6
Q ss_pred cCCCcceeEEeecCCccccchHHHHHHHHHhccceeEEeccCCchhhHHHHHhhcCCc-eeeEeecccccccccc--ccc
Q 003822 68 IGATEIEAVDVRSGTSCMLTGEFALSLMHAIDQKLRVVDLHDSSFGKDFIRNLSQRGL-MCEVLNLRSSRFRKLN--MIG 144 (793)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~ 144 (793)
++-+.+..+|+.+..-..+.... +.. -.+||..+|.++.+..---. ...++ .=+.|+|+.+++..+. ..|
T Consensus 48 l~l~~l~~l~l~~~~l~~lp~~~----~~~-l~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~~ 120 (597)
T 3oja_B 48 ITLNNQKIVTFKNSTMRKLPAAL----LDS-FRQVELLNLNDLQIEEIDTY--AFAYAHTIQKLYMGFNAIRYLPPHVFQ 120 (597)
T ss_dssp GGGCCCSEEEESSCEESEECTHH----HHH-CCCCSEEECTTSCCCEECTT--TTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred ccCCCceEEEeeCCCCCCcCHHH----Hcc-CCCCcEEECCCCCCCCCChH--HhcCCCCCCEEECCCCcCCCCCHHHHc
Confidence 33455666666544333333321 111 14688888887765431000 00111 2367788777777765 346
Q ss_pred ccceeeEEeeccccccccccccccccccccceeccccccchhhhHHHHHHhcCCcccceeccee
Q 003822 145 EFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELRFQNW 208 (793)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (793)
.+.+|.+|+|.++ .|+.++...|..||+|..|++-..++..+- ..++.+|++|++|.+..|
T Consensus 121 ~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~--~~~~~~l~~L~~L~L~~N 181 (597)
T 3oja_B 121 NVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERIE--DDTFQATTSLQNLQLSSN 181 (597)
T ss_dssp TCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBCC--TTTTTTCTTCCEEECTTS
T ss_pred CCCCCCEEEeeCC-CCCCCCHHHhccCCCCCEEEeeCCcCCCCC--hhhhhcCCcCcEEECcCC
Confidence 7788888888754 677888888888888888877776665432 234677788888877654
No 415
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=94.15 E-value=0.018 Score=61.65 Aligned_cols=105 Identities=15% Similarity=0.205 Sum_probs=71.2
Q ss_pred cceeEEeccCCchhhHHHHHhh--------cCCceeeEeeccccccccc-ccccccceeeEEeecccccccccccccccc
Q 003822 100 QKLRVVDLHDSSFGKDFIRNLS--------QRGLMCEVLNLRSSRFRKL-NMIGEFKRIHTLNLDYSTSLTSFKEDCFSC 170 (793)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (793)
.+|+..+|.++.+-..+-..+. ++=-+-+.|+|+.+++..+ .-.+.+.+|.+|+|.+ ..++.++.. |..
T Consensus 150 ~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~-N~l~~l~~~-l~~ 227 (328)
T 4fcg_A 150 NRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRN-SPLSALGPA-IHH 227 (328)
T ss_dssp TTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEES-SCCCCCCGG-GGG
T ss_pred cCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccC-CCCCcCchh-hcc
Confidence 5799999988533322211111 1112457888988888766 2367788899999985 467788775 889
Q ss_pred ccccceeccccccchhhhHHHHHHhcCCcccceeccee
Q 003822 171 MPNLICLSMCETRVGNLWTTIAALSKLPSLAELRFQNW 208 (793)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (793)
||+|..|.+-+...... ...++.++++|++|....|
T Consensus 228 l~~L~~L~Ls~n~~~~~--~p~~~~~l~~L~~L~L~~n 263 (328)
T 4fcg_A 228 LPKLEELDLRGCTALRN--YPPIFGGRAPLKRLILKDC 263 (328)
T ss_dssp CTTCCEEECTTCTTCCB--CCCCTTCCCCCCEEECTTC
T ss_pred CCCCCEEECcCCcchhh--hHHHhcCCCCCCEEECCCC
Confidence 99999988877444322 2235788899999988875
No 416
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=94.10 E-value=0.019 Score=61.10 Aligned_cols=103 Identities=16% Similarity=0.222 Sum_probs=70.8
Q ss_pred cceeEEeccCCchhhH---HHHHhhcCCceeeEeecccccccccccccccceeeEEeeccccccccccccccccccccce
Q 003822 100 QKLRVVDLHDSSFGKD---FIRNLSQRGLMCEVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLIC 176 (793)
Q Consensus 100 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (793)
.+||..+|.++.+..- .+..| -.=+.|+|+.+++..+.- +-|.+|.+|+|.. ..++.+....|..||+|+.
T Consensus 76 ~~L~~L~L~~n~l~~~~~~~~~~l----~~L~~L~Ls~n~l~~l~~-~~~~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~ 149 (330)
T 1xku_A 76 KNLHTLILINNKISKISPGAFAPL----VKLERLYLSKNQLKELPE-KMPKTLQELRVHE-NEITKVRKSVFNGLNQMIV 149 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTC----TTCCEEECCSSCCSBCCS-SCCTTCCEEECCS-SCCCBBCHHHHTTCTTCCE
T ss_pred CCCCEEECCCCcCCeeCHHHhcCC----CCCCEEECCCCcCCccCh-hhcccccEEECCC-CcccccCHhHhcCCccccE
Confidence 5688888887765432 12211 134678888777776532 3357888888874 4678888888888888888
Q ss_pred eccccccchhhhHHHHHHhcCCcccceeccee
Q 003822 177 LSMCETRVGNLWTTIAALSKLPSLAELRFQNW 208 (793)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (793)
|.+-..++...-....++.++++|++|.+..+
T Consensus 150 L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n 181 (330)
T 1xku_A 150 VELGTNPLKSSGIENGAFQGMKKLSYIRIADT 181 (330)
T ss_dssp EECCSSCCCGGGBCTTGGGGCTTCCEEECCSS
T ss_pred EECCCCcCCccCcChhhccCCCCcCEEECCCC
Confidence 88877777655555667888888888877553
No 417
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=94.10 E-value=0.027 Score=60.48 Aligned_cols=106 Identities=20% Similarity=0.260 Sum_probs=70.2
Q ss_pred cceeEEeccCCchhhHHHHHhhcCCceeeEeecccccccccc--cccccceeeEEeecccccccccccccccccccccee
Q 003822 100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLN--MIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICL 177 (793)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (793)
.+|+..||+++.+..--- +.+.+=-.=+.|+|+.+++..+. ..+.+.+|.+|+|.+ ..|+.++.+.|.-||+|+.|
T Consensus 52 ~~L~~L~l~~n~i~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L 129 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISN-SDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSY-NYLSNLSSSWFKPLSSLTFL 129 (353)
T ss_dssp TTCCEEECTTSCCCEECT-TTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS-SCCSSCCHHHHTTCTTCSEE
T ss_pred ccCcEEECCCCcCcccCH-HHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCC-CcCCcCCHhHhCCCccCCEE
Confidence 578888888876553110 01111123467888888777763 366778888888884 46778888888888888888
Q ss_pred ccccccchhhhHHHHHHhcCCcccceeccee
Q 003822 178 SMCETRVGNLWTTIAALSKLPSLAELRFQNW 208 (793)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (793)
++-..++..+-. ..++.++++|++|.+..|
T Consensus 130 ~L~~n~l~~l~~-~~~~~~l~~L~~L~l~~n 159 (353)
T 2z80_A 130 NLLGNPYKTLGE-TSLFSHLTKLQILRVGNM 159 (353)
T ss_dssp ECTTCCCSSSCS-SCSCTTCTTCCEEEEEES
T ss_pred ECCCCCCcccCc-hhhhccCCCCcEEECCCC
Confidence 887776653311 024677888888888765
No 418
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=94.04 E-value=0.024 Score=63.71 Aligned_cols=94 Identities=18% Similarity=0.162 Sum_probs=64.1
Q ss_pred cceeEEeccCCchhhHHHHHhhcCCc-eeeEeecccccccccccccccceeeEEeeccccccccccccccccccccceec
Q 003822 100 QKLRVVDLHDSSFGKDFIRNLSQRGL-MCEVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLS 178 (793)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (793)
.+||..||.++.+..-- -.++ .=+.|+|+.+++..+. .|.+.+|++|+|.++ .++.++ |..||+|+.|+
T Consensus 64 ~~L~~L~Ls~n~l~~~~-----~~~l~~L~~L~Ls~N~l~~~~-~~~l~~L~~L~L~~N-~l~~l~---~~~l~~L~~L~ 133 (457)
T 3bz5_A 64 TGLTKLICTSNNITTLD-----LSQNTNLTYLACDSNKLTNLD-VTPLTKLTYLNCDTN-KLTKLD---VSQNPLLTYLN 133 (457)
T ss_dssp TTCSEEECCSSCCSCCC-----CTTCTTCSEEECCSSCCSCCC-CTTCTTCCEEECCSS-CCSCCC---CTTCTTCCEEE
T ss_pred CCCCEEEccCCcCCeEc-----cccCCCCCEEECcCCCCceee-cCCCCcCCEEECCCC-cCCeec---CCCCCcCCEEE
Confidence 56777777777665421 1111 2467777777777776 567778888888754 677664 77788888887
Q ss_pred cccccchhhhHHHHHHhcCCcccceeccee
Q 003822 179 MCETRVGNLWTTIAALSKLPSLAELRFQNW 208 (793)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (793)
+-..++..+ .++++++|++|.+..|
T Consensus 134 l~~N~l~~l-----~l~~l~~L~~L~l~~n 158 (457)
T 3bz5_A 134 CARNTLTEI-----DVSHNTQLTELDCHLN 158 (457)
T ss_dssp CTTSCCSCC-----CCTTCTTCCEEECTTC
T ss_pred CCCCcccee-----ccccCCcCCEEECCCC
Confidence 777776665 2677777777777665
No 419
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=94.01 E-value=0.037 Score=58.63 Aligned_cols=98 Identities=21% Similarity=0.323 Sum_probs=61.9
Q ss_pred cceeEEeccCCchhhHHHHHhhcCCceeeEeecccccccccc--cccccceeeEEeecccccccccccccccccccccee
Q 003822 100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLN--MIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICL 177 (793)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (793)
.++.+.++.++.+ ++.+..+++.--.=+.|+|+.+.+..+. ..+.+.+|++|+|.++ .++.+.. |..||+|+.|
T Consensus 10 ~~l~i~~ls~~~l-~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~--~~~l~~L~~L 85 (317)
T 3o53_A 10 NRYKIEKVTDSSL-KQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN-VLYETLD--LESLSTLRTL 85 (317)
T ss_dssp TEEEEESCCTTTH-HHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTS-CCEEEEE--ETTCTTCCEE
T ss_pred CceeEeeccccch-hhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCC-cCCcchh--hhhcCCCCEE
Confidence 3466667777666 4455566554445567777777777664 3567777777777743 4555443 7777777777
Q ss_pred ccccccchhhhHHHHHHhcCCcccceeccee
Q 003822 178 SMCETRVGNLWTTIAALSKLPSLAELRFQNW 208 (793)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (793)
.+-..++..+ ..+|+|++|.+..|
T Consensus 86 ~Ls~n~l~~l-------~~~~~L~~L~l~~n 109 (317)
T 3o53_A 86 DLNNNYVQEL-------LVGPSIETLHAANN 109 (317)
T ss_dssp ECCSSEEEEE-------EECTTCCEEECCSS
T ss_pred ECcCCccccc-------cCCCCcCEEECCCC
Confidence 7776666543 24467777766543
No 420
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=93.99 E-value=2.4 Score=43.91 Aligned_cols=190 Identities=12% Similarity=0.100 Sum_probs=98.6
Q ss_pred CCCEEEEEeC----C-----CeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcC-----CcEEEEEcCC
Q 003822 465 ISCLMVFGTL----D-----GEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDN-----GSLKLYDIRH 530 (793)
Q Consensus 465 d~~~Lasgs~----D-----G~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~D-----gtV~vWDl~~ 530 (793)
++.+++.|+. + ..+.+||..+.+....-...........+. .++.+++.|+.+ ..+.+||..+
T Consensus 70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~---~~~~iyv~GG~~~~~~~~~~~~yd~~~ 146 (308)
T 1zgk_A 70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGV---IDGHIYAVGGSHGCIHHNSVERYEPER 146 (308)
T ss_dssp TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEE---ETTEEEEECCEETTEECCCEEEEETTT
T ss_pred CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEE---ECCEEEEEcCCCCCcccccEEEECCCC
Confidence 4567777765 2 468899998876544322211111222222 256677776643 3578888876
Q ss_pred CCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEECC-----CcEEEEECCCCcEEEE--EcccCCCCeEEEEEcC
Q 003822 531 MPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYS-----KNIALYDINSGRRLQV--FADMHKEHINVVKFSN 603 (793)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~D-----g~I~IWDl~tg~~l~~--~~~gh~~~V~sv~fsp 603 (793)
.+-.. ..... ... .....+.+ ++..++.+|.+ ..+.+||+.+.+-... +.. .......+.+
T Consensus 147 ~~W~~--~~~~p-~~r----~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~~-- 214 (308)
T 1zgk_A 147 DEWHL--VAPML-TRR----IGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNT-IRSGAGVCVL-- 214 (308)
T ss_dssp TEEEE--CCCCS-SCC----BSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSS-CCBSCEEEEE--
T ss_pred CeEeE--CCCCC-ccc----cceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCC-ccccceEEEE--
Confidence 54211 11000 000 11122222 45556666543 5689999987654322 111 1111223333
Q ss_pred CCCcEEEEEeCC-----CeEEEEECCCCCccceEEccCCCCeEEEEEecCCCEEEEEeCC-----CeEEEEEcCCCcE
Q 003822 604 HSPSIFATSSFD-----QDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLVSAVD-----NEVRQLLAVDGRV 671 (793)
Q Consensus 604 dg~~~LaTgs~D-----g~IrIWDlrt~~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs~D-----g~I~IwDl~tg~~ 671 (793)
++ .+++.|+.+ ..+.+||+.+.....+..++......+++. -+++.++.|+.+ ..+.+||..+.+.
T Consensus 215 ~~-~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 290 (308)
T 1zgk_A 215 HN-CIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITV-HQGRIYVLGGYDGHTFLDSVECYDPDTDTW 290 (308)
T ss_dssp TT-EEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCSSCBCCEEEEEETTTTEE
T ss_pred CC-EEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccceEEEE-ECCEEEEEcCcCCCcccceEEEEcCCCCEE
Confidence 44 788888765 459999998864433322222211112222 256777777643 4678899887764
No 421
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=93.99 E-value=0.029 Score=63.04 Aligned_cols=96 Identities=20% Similarity=0.207 Sum_probs=76.6
Q ss_pred cceeEEeccCCchhhHHHHHhhcCCceeeEeecccccccccccccccceeeEEeeccccccccccccccccccccceecc
Q 003822 100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSM 179 (793)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (793)
.+||.+||.++.+..- ..+. .=-.=+.|+|+.+.+..+. .|.+.+|.+|+|.++ .++.++ |..||+|+.|..
T Consensus 42 ~~L~~L~Ls~n~l~~~--~~l~-~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N-~l~~~~---~~~l~~L~~L~L 113 (457)
T 3bz5_A 42 ATLTSLDCHNSSITDM--TGIE-KLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSN-KLTNLD---VTPLTKLTYLNC 113 (457)
T ss_dssp TTCCEEECCSSCCCCC--TTGG-GCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSS-CCSCCC---CTTCTTCCEEEC
T ss_pred CCCCEEEccCCCcccC--hhhc-ccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCC-CCceee---cCCCCcCCEEEC
Confidence 5789999998876531 1111 1113478999999999987 788999999999965 588885 999999999999
Q ss_pred ccccchhhhHHHHHHhcCCcccceeccee
Q 003822 180 CETRVGNLWTTIAALSKLPSLAELRFQNW 208 (793)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (793)
-..++..++ +.++++|++|.+..|
T Consensus 114 ~~N~l~~l~-----~~~l~~L~~L~l~~N 137 (457)
T 3bz5_A 114 DTNKLTKLD-----VSQNPLLTYLNCARN 137 (457)
T ss_dssp CSSCCSCCC-----CTTCTTCCEEECTTS
T ss_pred CCCcCCeec-----CCCCCcCCEEECCCC
Confidence 999988874 889999999988764
No 422
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=93.96 E-value=0.024 Score=59.42 Aligned_cols=107 Identities=18% Similarity=0.225 Sum_probs=77.0
Q ss_pred ccceeEEeccCCchhhHHHHHhhcCCceeeEeeccccccccc--ccccccceeeEEeecccccccc-ccccccccccccc
Q 003822 99 DQKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKL--NMIGEFKRIHTLNLDYSTSLTS-FKEDCFSCMPNLI 175 (793)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 175 (793)
-.+|+..+|+++.+..--.-..+..=-+=+.|+|+.+++... ...+.+.+|++|+|..+ .++. +....|..||+|+
T Consensus 100 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~ 178 (306)
T 2z66_A 100 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN-SFQENFLPDIFTELRNLT 178 (306)
T ss_dssp CTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTC-EEGGGEECSCCTTCTTCC
T ss_pred CCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCC-ccccccchhHHhhCcCCC
Confidence 368999999987664321101111112346899998888765 34567899999999965 5554 5667899999999
Q ss_pred eeccccccchhhhHHHHHHhcCCcccceeccee
Q 003822 176 CLSMCETRVGNLWTTIAALSKLPSLAELRFQNW 208 (793)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (793)
.|.+-..++..+ ...++.++++|++|.+..+
T Consensus 179 ~L~Ls~n~l~~~--~~~~~~~l~~L~~L~L~~N 209 (306)
T 2z66_A 179 FLDLSQCQLEQL--SPTAFNSLSSLQVLNMSHN 209 (306)
T ss_dssp EEECTTSCCCEE--CTTTTTTCTTCCEEECTTS
T ss_pred EEECCCCCcCCc--CHHHhcCCCCCCEEECCCC
Confidence 999988877654 1356789999999999875
No 423
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=93.94 E-value=0.021 Score=63.36 Aligned_cols=64 Identities=19% Similarity=0.317 Sum_probs=30.7
Q ss_pred ccccceeeEEeeccccccccccccccccccccceeccccccchhhhHHHHHHhcCCcccceecce
Q 003822 143 IGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELRFQN 207 (793)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (793)
.+.+.+|.+|+|.++ .++.+..+.|..|++|+.|.+-..++........++.+|++|++|.+..
T Consensus 75 ~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~ 138 (455)
T 3v47_A 75 FRGLSSLIILKLDYN-QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRD 138 (455)
T ss_dssp TTTCTTCCEEECTTC-TTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCS
T ss_pred ccccccCCEEeCCCC-ccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCC
Confidence 344455555555532 3455555555555555555555444443222223355555555555544
No 424
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=93.93 E-value=0.012 Score=65.92 Aligned_cols=78 Identities=13% Similarity=0.211 Sum_probs=37.9
Q ss_pred eeEeecccccccccc--cccccceeeEEeeccccccccccccccccccccceeccccccchhhhHHHHHHhcCCccccee
Q 003822 127 CEVLNLRSSRFRKLN--MIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELR 204 (793)
Q Consensus 127 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (793)
=+.|+|+.+++..+. ..+.+.+|.+|+|.++ .|+.+....|..+|+|..|.+-..++..+ ...++.+|++|++|.
T Consensus 226 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~ 302 (477)
T 2id5_A 226 LTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYN-PISTIEGSMLHELLRLQEIQLVGGQLAVV--EPYAFRGLNYLRVLN 302 (477)
T ss_dssp CSEEEEESSCCCSCCHHHHTTCTTCCEEECCSS-CCCEECTTSCTTCTTCCEEECCSSCCSEE--CTTTBTTCTTCCEEE
T ss_pred ccEEECcCCcccccCHHHhcCccccCeeECCCC-cCCccChhhccccccCCEEECCCCccceE--CHHHhcCcccCCEEE
Confidence 344455555444443 2344555555555532 35555555555555555555554444432 122445555555555
Q ss_pred cce
Q 003822 205 FQN 207 (793)
Q Consensus 205 ~~~ 207 (793)
+..
T Consensus 303 L~~ 305 (477)
T 2id5_A 303 VSG 305 (477)
T ss_dssp CCS
T ss_pred CCC
Confidence 443
No 425
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=93.91 E-value=1.8 Score=47.72 Aligned_cols=142 Identities=9% Similarity=0.067 Sum_probs=88.8
Q ss_pred CCCEEEEEECCCcEEEEECCCCcEEEEEcccC---CCCeEEEEEcCCCCcEEEEEeCCCeEEEEECCCCCc---------
Q 003822 561 MDELFLASGYSKNIALYDINSGRRLQVFADMH---KEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPI--------- 628 (793)
Q Consensus 561 ~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh---~~~V~sv~fspdg~~~LaTgs~Dg~IrIWDlrt~~~--------- 628 (793)
++..+++ ..++.||.-++..+...+.+...+ -..|..+..+|+| .+||..+ +..|.|-.+..+..
T Consensus 31 n~t~i~~-a~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG-~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~ 107 (452)
T 3pbp_A 31 NGTRIVF-IQDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSG-DLLCLFN-DNEIFVMEVPWGYSNVEDVSIQD 107 (452)
T ss_dssp TTTEEEE-EETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTS-SEEEEEC-SSEEEEEECCTTCSCCCCHHHHH
T ss_pred CCCEEEE-EECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCC-CEEEEec-CCeEEEEEecCccccCccccccc
Confidence 3444433 345888888888554455554221 2267889999999 7888776 45789988873210
Q ss_pred -cc--eEEccC-----CCCeEEEEEecC---CCEEEEEeCCCeEEEEEcCCCc--EEEEEeee------cCCCCCcEEEE
Q 003822 629 -QP--CYTASS-----SKGNVMVCFSPD---DHYLLVSAVDNEVRQLLAVDGR--VHLNFGIT------ATGSSQNYTRS 689 (793)
Q Consensus 629 -~~--~~~l~~-----~~~~vsv~fSpd---g~~Lasgs~Dg~I~IwDl~tg~--~~~~l~~~------~~~~~~v~s~a 689 (793)
.. .+.+.. ...+..+.|+|- |..|++-..|+.|++||+.... +. .+... ......+.+++
T Consensus 108 ~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~ 186 (452)
T 3pbp_A 108 AFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLE 186 (452)
T ss_dssp TTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEE
T ss_pred ccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEE
Confidence 01 233321 234557999994 6789999999999999998632 22 22210 11125677888
Q ss_pred EeeCCCeEEEEEe--CCCcE
Q 003822 690 YYLNGRDYIVSGS--CDEHV 707 (793)
Q Consensus 690 fspdg~~~L~Sgs--~Dg~I 707 (793)
|.+++- .|...+ ..|.|
T Consensus 187 Fg~~~l-TLYvl~~t~~GDI 205 (452)
T 3pbp_A 187 FSKDGL-TLYCLNTTEGGDI 205 (452)
T ss_dssp ECTTSS-CEEEEECTTSCEE
T ss_pred EcCCCc-EEEEEecCCCCCE
Confidence 888664 555544 77777
No 426
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=93.88 E-value=0.018 Score=66.66 Aligned_cols=105 Identities=17% Similarity=0.165 Sum_probs=60.5
Q ss_pred cceeEEeccCCchhhHHHHHhhcCCceeeEeecccccccccc--cccccceeeEEeecccccccccccccccccccccee
Q 003822 100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLN--MIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICL 177 (793)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (793)
.+||.+||+.+.+..-- ..-+.+=-.=+.|+|+.+.+..+. ..+.+.+|.+|+|.++ .++.+..+.|.-|++|+.|
T Consensus 32 ~~l~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n-~l~~~~p~~~~~l~~L~~L 109 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILK-SYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN-PIQSFSPGSFSGLTSLENL 109 (606)
T ss_dssp TTCCEEECTTSCCCEEC-TTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCCCCTTSSTTCTTCCEE
T ss_pred CCcCEEECCCCCcCEeC-hhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCC-cccccChhhcCCcccCCEE
Confidence 56666777665542210 000000012256677766666652 3456677777777744 4777766777777777777
Q ss_pred ccccccchhhhHHHHHHhcCCcccceeccee
Q 003822 178 SMCETRVGNLWTTIAALSKLPSLAELRFQNW 208 (793)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (793)
+.-.+++..+... ++.+|++|++|.+..|
T Consensus 110 ~L~~n~l~~~~~~--~~~~l~~L~~L~L~~n 138 (606)
T 3vq2_A 110 VAVETKLASLESF--PIGQLITLKKLNVAHN 138 (606)
T ss_dssp ECTTSCCCCSSSS--CCTTCTTCCEEECCSS
T ss_pred EccCCcccccccc--ccCCCCCCCEEeCCCC
Confidence 7776666554321 2667777777776654
No 427
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=93.80 E-value=0.02 Score=66.21 Aligned_cols=103 Identities=17% Similarity=0.216 Sum_probs=70.3
Q ss_pred cceeEEeccCCchh---hHHHHHhhcCCceeeEeecccccccccc--cccccceeeEEeecccccccccccccccccccc
Q 003822 100 QKLRVVDLHDSSFG---KDFIRNLSQRGLMCEVLNLRSSRFRKLN--MIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNL 174 (793)
Q Consensus 100 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (793)
.+||+.||+++.+. .++++.|. +=++|+|+.+++..+. +.+...+|.+|+|.++ .|+.++...|..|++|
T Consensus 76 ~~L~~L~Ls~N~i~~i~~~~f~~L~----~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N-~l~~l~~~~~~~L~~L 150 (635)
T 4g8a_A 76 PELQVLDLSRCEIQTIEDGAYQSLS----HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET-NLASLENFPIGHLKTL 150 (635)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCT----TCCEEECTTCCCCEECGGGGTTCTTCCEEECTTS-CCCCSTTCCCTTCTTC
T ss_pred CCCCEEECCCCcCCCcChhHhcCCC----CCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCC-cCCCCChhhhhcCccc
Confidence 36888888887542 22333222 2368888888888774 3566778888888854 7888888888888888
Q ss_pred ceeccccccchhhhHHHHHHhcCCcccceeccee
Q 003822 175 ICLSMCETRVGNLWTTIAALSKLPSLAELRFQNW 208 (793)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (793)
+.|..-..++..+ ..-.++.+|++|++|.+..+
T Consensus 151 ~~L~Ls~N~l~~~-~~~~~~~~l~~L~~L~L~~N 183 (635)
T 4g8a_A 151 KELNVAHNLIQSF-KLPEYFSNLTNLEHLDLSSN 183 (635)
T ss_dssp CEEECCSSCCCCC-CCCGGGGGCTTCCEEECCSS
T ss_pred CeeccccCccccC-CCchhhccchhhhhhcccCc
Confidence 8888766555322 01245677888888877653
No 428
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=93.77 E-value=0.12 Score=55.68 Aligned_cols=196 Identities=12% Similarity=0.030 Sum_probs=104.2
Q ss_pred CEEEEEEcCCcEEEEEcCCCCCcccccccC-CceeEecCCCCeEEEEEccCCCEEEEE--ECCCcEEEEECCCCcEEEEE
Q 003822 512 SKLIAGSDNGSLKLYDIRHMPPSIRGMHYG-AGTVTFDEFDQLTSVHVNSMDELFLAS--GYSKNIALYDINSGRRLQVF 588 (793)
Q Consensus 512 ~~Lasgs~DgtV~vWDl~~~~~~~~~~~~~-~~~~~~~~~~~V~sv~~s~~~~~lla~--g~Dg~I~IWDl~tg~~l~~~ 588 (793)
..++.++.||.|.-+|..+++..+...... ...+...... .+.++.++++ ..||.+..+|..+|.....+
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~-------~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~ 83 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPS-------RLETYETLIIEPFGDGNIYYFNAHQGLQKLPL 83 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSC-------TTTSSEEEEECCSTTTEEEEEETTTEEEEEEE
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCc-------cccCCcEEEEEECCCCEEEEEECCCCcEEeee
Confidence 478889999999999998887755433221 1111111000 0124455555 47999999999988655544
Q ss_pred ccc---CCCCeEE---EEE-cC----CCCcEEEEEeCCCeEEEEECCCCCccceEEccCCCCe------EEEE---Ee--
Q 003822 589 ADM---HKEHINV---VKF-SN----HSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGN------VMVC---FS-- 646 (793)
Q Consensus 589 ~~g---h~~~V~s---v~f-sp----dg~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~~~~------vsv~---fS-- 646 (793)
... ...++.. ... .+ .+ ..+++|+.+|.+...|+++++..-.+......+. .+.. +.
T Consensus 84 ~~~~lv~~SP~~~~~~pvv~~~~~~~~~-g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d 162 (339)
T 2be1_A 84 SIRQLVSTSPLHLKTNIVVNDSGKIVED-EKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQ 162 (339)
T ss_dssp EHHHHHTTCSEEEECC----------CC-EEEEECEEEEEEEEEETTTCCEEEEESTTCBCC------------------
T ss_pred ccccceeccccccCCCceeecccccccC-CEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccc
Confidence 310 1222221 000 00 23 5788999999999999999954433332221111 1111 10
Q ss_pred cCCCEEEEEeCCCeEEEEEcCCCcEEEEEeee--cCCCCC--cE-EEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcEEE
Q 003822 647 PDDHYLLVSAVDNEVRQLLAVDGRVHLNFGIT--ATGSSQ--NY-TRSYYLNGRDYIVSGSCDEHVVRICCAQTGRRLR 720 (793)
Q Consensus 647 pdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~--~~~~~~--v~-s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~l~ 720 (793)
..+..++.+..+..+.+.+ ++|+ ...+... ...... +. ....+.++. + +.++.||.+ .-.|..+|+.+.
T Consensus 163 ~~~~~v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~-~-~~~~~dg~v-~A~d~~~G~~~W 236 (339)
T 2be1_A 163 ECENMIVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGM-C-IAPFRDKSL-LASDLDFRIARW 236 (339)
T ss_dssp --CCEEEEEEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSC-C-EEEETTTEE-EEECSTTCCEEE
T ss_pred cCCCeEEEecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCc-E-EEECCCCEE-EEEECCCCcEEE
Confidence 1245677777777777666 4453 2111110 000000 00 000122455 4 557889999 999999999876
No 429
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=93.47 E-value=0.039 Score=62.46 Aligned_cols=100 Identities=17% Similarity=0.258 Sum_probs=66.5
Q ss_pred cceeEEeccCCchhhHHHHHhhcCCceeeEeecccccccccccccccceeeEEeeccccccccccccccccccccceecc
Q 003822 100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSM 179 (793)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (793)
.+|+..||.++.+.. +. .+-+=+.|+|+.+++..+.. +.|.+|.+|+|. ...|+.+...-|.+||+|..|++
T Consensus 80 ~~L~~L~Ls~N~l~~-----l~-~~~~L~~L~L~~N~l~~~~~-~~l~~L~~L~L~-~N~l~~~~~~~~~~l~~L~~L~L 151 (487)
T 3oja_A 80 STLRTLDLNNNYVQE-----LL-VGPSIETLHAANNNISRVSC-SRGQGKKNIYLA-NNKITMLRDLDEGCRSRVQYLDL 151 (487)
T ss_dssp TTCCEEECCSSEEEE-----EE-ECTTCCEEECCSSCCCCEEE-CCCSSCEEEECC-SSCCCSGGGBCGGGGSSEEEEEC
T ss_pred CCCCEEEecCCcCCC-----CC-CCCCcCEEECcCCcCCCCCc-cccCCCCEEECC-CCCCCCCCchhhcCCCCCCEEEC
Confidence 456666666665442 11 11234566777776666654 457888888888 55788888888888888888888
Q ss_pred ccccchhhhHHHHHHh-cCCcccceecceee
Q 003822 180 CETRVGNLWTTIAALS-KLPSLAELRFQNWL 209 (793)
Q Consensus 180 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 209 (793)
...++..+ ...++. +|++|++|.+..|-
T Consensus 152 s~N~l~~~--~~~~l~~~l~~L~~L~Ls~N~ 180 (487)
T 3oja_A 152 KLNEIDTV--NFAELAASSDTLEHLNLQYNF 180 (487)
T ss_dssp TTSCCCEE--EGGGGGGGTTTCCEEECTTSC
T ss_pred CCCCCCCc--ChHHHhhhCCcccEEecCCCc
Confidence 87776653 223443 67888888877653
No 430
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=93.40 E-value=0.023 Score=67.86 Aligned_cols=78 Identities=22% Similarity=0.258 Sum_probs=52.2
Q ss_pred eeeEeecccccccccc-cccccceeeEEeeccccccccccccccccccccceeccccccchhhhHHHHHHhcCCccccee
Q 003822 126 MCEVLNLRSSRFRKLN-MIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELR 204 (793)
Q Consensus 126 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (793)
.=+.|+|+.+++..+. -++.+.+|.+|+|.++ .|+.|+ ..|..|++|..|++-..++..| -..+.+|++|++|.
T Consensus 225 ~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N-~l~~lp-~~~~~l~~L~~L~Ls~N~l~~l---p~~~~~l~~L~~L~ 299 (727)
T 4b8c_D 225 LWHALDLSNLQIFNISANIFKYDFLTRLYLNGN-SLTELP-AEIKNLSNLRVLDLSHNRLTSL---PAELGSCFQLKYFY 299 (727)
T ss_dssp CCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTS-CCSCCC-GGGGGGTTCCEEECTTSCCSSC---CSSGGGGTTCSEEE
T ss_pred CCcEEECCCCCCCCCChhhcCCCCCCEEEeeCC-cCcccC-hhhhCCCCCCEEeCcCCcCCcc---ChhhcCCCCCCEEE
Confidence 3456777777777653 3456777777777744 666666 5577777777777777776644 33466777777777
Q ss_pred ccee
Q 003822 205 FQNW 208 (793)
Q Consensus 205 ~~~~ 208 (793)
+..+
T Consensus 300 L~~N 303 (727)
T 4b8c_D 300 FFDN 303 (727)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 7665
No 431
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=93.33 E-value=0.028 Score=60.85 Aligned_cols=79 Identities=23% Similarity=0.337 Sum_probs=65.0
Q ss_pred eeEeeccccccccccc--cc-ccceeeEEeeccccccccccccccccccccceeccccccchhhhHHHHHHhcCCcccce
Q 003822 127 CEVLNLRSSRFRKLNM--IG-EFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAEL 203 (793)
Q Consensus 127 ~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (793)
=+.|+|+.+++..+.. .+ .+.+|++|+|.+ +.|+.+..+-|.-||+|+.|.+-..++..+ ...+++.|++|++|
T Consensus 41 l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~-N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~--~~~~~~~l~~L~~L 117 (361)
T 2xot_A 41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSH-NHLNFISSEAFVPVPNLRYLDLSSNHLHTL--DEFLFSDLQALEVL 117 (361)
T ss_dssp CSEEECCSSCCCEECTTSSSSCCTTCCEEECCS-SCCCEECTTTTTTCTTCCEEECCSSCCCEE--CTTTTTTCTTCCEE
T ss_pred CCEEECCCCCCCccChhhhhhcccccCEEECCC-CcCCccChhhccCCCCCCEEECCCCcCCcC--CHHHhCCCcCCCEE
Confidence 3789999999988764 22 789999999984 589999999999999999999998887654 22357899999999
Q ss_pred eccee
Q 003822 204 RFQNW 208 (793)
Q Consensus 204 ~~~~~ 208 (793)
.+..+
T Consensus 118 ~L~~N 122 (361)
T 2xot_A 118 LLYNN 122 (361)
T ss_dssp ECCSS
T ss_pred ECCCC
Confidence 98653
No 432
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=93.31 E-value=0.023 Score=60.53 Aligned_cols=77 Identities=18% Similarity=0.264 Sum_probs=43.1
Q ss_pred eEeecccccccccccccccceeeEEeeccccccccccccccccccccceeccccccchhhhHHHHHHhcCCcccceecce
Q 003822 128 EVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELRFQN 207 (793)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (793)
+.|+|+.+++..+.. +-+.+|.+|+|.+ ..++.+....|..||+|+.|.+-..++..+- ..++.++++|++|.+..
T Consensus 175 ~~L~l~~n~l~~l~~-~~~~~L~~L~l~~-n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~L~~ 250 (332)
T 2ft3_A 175 NYLRISEAKLTGIPK-DLPETLNELHLDH-NKIQAIELEDLLRYSKLYRLGLGHNQIRMIE--NGSLSFLPTLRELHLDN 250 (332)
T ss_dssp SCCBCCSSBCSSCCS-SSCSSCSCCBCCS-SCCCCCCTTSSTTCTTCSCCBCCSSCCCCCC--TTGGGGCTTCCEEECCS
T ss_pred CEEECcCCCCCccCc-cccCCCCEEECCC-CcCCccCHHHhcCCCCCCEEECCCCcCCcCC--hhHhhCCCCCCEEECCC
Confidence 334444444443321 2234666666663 3566666667777777777776666555431 12456677777777665
Q ss_pred e
Q 003822 208 W 208 (793)
Q Consensus 208 ~ 208 (793)
|
T Consensus 251 N 251 (332)
T 2ft3_A 251 N 251 (332)
T ss_dssp S
T ss_pred C
Confidence 4
No 433
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=93.31 E-value=0.028 Score=62.42 Aligned_cols=80 Identities=16% Similarity=0.268 Sum_probs=64.8
Q ss_pred eeEeeccccccccc--ccccccceeeEEeeccccccccccccccccccccceeccccccchhhhHHHHHHhcCCccccee
Q 003822 127 CEVLNLRSSRFRKL--NMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELR 204 (793)
Q Consensus 127 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (793)
-+.|+|+.+++..+ ...+.+.+|.+|+|..+.-...+..+-|..|++|+.|++-..++..+ ...++.+|++|++|.
T Consensus 32 l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 32 VNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQL--ETGAFNGLANLEVLT 109 (455)
T ss_dssp CCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEE--CTTTTTTCTTCCEEE
T ss_pred cCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCcc--ChhhccCcccCCEEe
Confidence 36777777777766 44678999999999987665688889999999999999988877654 235788999999999
Q ss_pred ccee
Q 003822 205 FQNW 208 (793)
Q Consensus 205 ~~~~ 208 (793)
+..|
T Consensus 110 L~~n 113 (455)
T 3v47_A 110 LTQC 113 (455)
T ss_dssp CTTS
T ss_pred CCCC
Confidence 9876
No 434
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=93.30 E-value=0.087 Score=60.81 Aligned_cols=78 Identities=22% Similarity=0.344 Sum_probs=45.5
Q ss_pred eeEeeccccccccccc--ccccceeeEEeeccccccccccccccccccccceeccccccchhhhHHHHHHhcCCccccee
Q 003822 127 CEVLNLRSSRFRKLNM--IGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELR 204 (793)
Q Consensus 127 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (793)
=+.|+|+.+.+..+.. .+.+.+|.+|+|.++ .++.++.. |..||+|+.|.+-..++..+= ..++.++|+|++|.
T Consensus 256 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~lp~~-l~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~ 331 (606)
T 3t6q_A 256 VESINLQKHYFFNISSNTFHCFSGLQELDLTAT-HLSELPSG-LVGLSTLKKLVLSANKFENLC--QISASNFPSLTHLS 331 (606)
T ss_dssp EEEEECTTCCCSSCCTTTTTTCTTCSEEECTTS-CCSCCCSS-CCSCTTCCEEECTTCCCSBGG--GGCGGGCTTCSEEE
T ss_pred eeEEEeecCccCccCHHHhccccCCCEEeccCC-ccCCCChh-hcccccCCEEECccCCcCcCc--hhhhhccCcCCEEE
Confidence 3455565555555443 455666667777644 56666553 566667776666666555431 23456666666666
Q ss_pred ccee
Q 003822 205 FQNW 208 (793)
Q Consensus 205 ~~~~ 208 (793)
+..|
T Consensus 332 l~~n 335 (606)
T 3t6q_A 332 IKGN 335 (606)
T ss_dssp CCSC
T ss_pred CCCC
Confidence 6654
No 435
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=93.17 E-value=0.12 Score=50.33 Aligned_cols=114 Identities=12% Similarity=0.163 Sum_probs=53.7
Q ss_pred cceeEEeecCCcc-ccchHHHHHHHHHh--ccceeEEeccCCchhhHHHHHhhcCCceeeEeecccccccccccccccce
Q 003822 72 EIEAVDVRSGTSC-MLTGEFALSLMHAI--DQKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLNMIGEFKR 148 (793)
Q Consensus 72 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (793)
.+..+|+ +.| .+..+-+..+..++ |..|+..||.++.+|.+-.+.|.+. ...-..
T Consensus 37 ~L~~L~L---~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~-------------------L~~n~~ 94 (185)
T 1io0_A 37 DLEEVNL---NNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEM-------------------LKVNNT 94 (185)
T ss_dssp TCCEEEC---TTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHH-------------------HHHCSS
T ss_pred CCCEEEe---cCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHH-------------------HHhCCC
Confidence 3444544 234 44444444444432 4556666666665555544433221 111234
Q ss_pred eeEEeecccccccccc----ccccccccccceecc--ccccchhh--hHHHHHHhcCCcccceeccee
Q 003822 149 IHTLNLDYSTSLTSFK----EDCFSCMPNLICLSM--CETRVGNL--WTTIAALSKLPSLAELRFQNW 208 (793)
Q Consensus 149 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~--~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 208 (793)
|++|+|.++ .|+.-. -..+.-.++|..|++ -...+.+- =....+|.+.++|++|.+..|
T Consensus 95 L~~L~L~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 95 LKSLNVESN-FISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp CCEEECCSS-CCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred cCEEECcCC-cCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 555555532 333211 122333456666666 44444331 123456667777777776543
No 436
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=93.15 E-value=0.098 Score=60.01 Aligned_cols=14 Identities=29% Similarity=0.330 Sum_probs=7.6
Q ss_pred hcCCcccceeccee
Q 003822 195 SKLPSLAELRFQNW 208 (793)
Q Consensus 195 ~~~~~~~~~~~~~~ 208 (793)
..+|+|++|.+..|
T Consensus 478 ~~~~~L~~L~L~~n 491 (594)
T 2p1m_B 478 SGCDSLRKLEIRDC 491 (594)
T ss_dssp HHCTTCCEEEEESC
T ss_pred hcCCCcCEEECcCC
Confidence 44555555555544
No 437
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=93.13 E-value=0.032 Score=64.55 Aligned_cols=105 Identities=19% Similarity=0.195 Sum_probs=74.1
Q ss_pred cceeEEeccCCchhhHHHHHhhcCCceeeEeecccccccc---cccccccceeeEEeeccccccccccccccccccccce
Q 003822 100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRK---LNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLIC 176 (793)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (793)
.+|+..+|.++.+....-..+ .+=-+=+.|+|+.+++.. -...+.+.+|++|+|.++ .++.+....|..||+|+.
T Consensus 424 ~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~ 501 (606)
T 3vq2_A 424 EKLLYLDISYTNTKIDFDGIF-LGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKC-QLEQISWGVFDTLHRLQL 501 (606)
T ss_dssp TTCCEEECTTSCCEECCTTTT-TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCE
T ss_pred ccCCEEECcCCCCCccchhhh-cCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCC-cCCccChhhhcccccCCE
Confidence 578899998877654321111 111234678888888775 234567788888988865 788888888888899988
Q ss_pred eccccccchhhhHHHHHHhcCCcccceeccee
Q 003822 177 LSMCETRVGNLWTTIAALSKLPSLAELRFQNW 208 (793)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (793)
|.+-..++..+ ...++.+|++|++|....|
T Consensus 502 L~Ls~N~l~~~--~~~~~~~l~~L~~L~l~~N 531 (606)
T 3vq2_A 502 LNMSHNNLLFL--DSSHYNQLYSLSTLDCSFN 531 (606)
T ss_dssp EECCSSCCSCE--EGGGTTTCTTCCEEECTTS
T ss_pred EECCCCcCCCc--CHHHccCCCcCCEEECCCC
Confidence 88887777654 2356778888888888765
No 438
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=93.11 E-value=1.5 Score=46.37 Aligned_cols=196 Identities=12% Similarity=0.069 Sum_probs=97.4
Q ss_pred CCCEEEEEeC-C---------CeEEEEECCCCeEEEEEecc-CCCCCEEEEEEeeCCCCEEEEEEcC-------------
Q 003822 465 ISCLMVFGTL-D---------GEIVVVNHENENIVSYIPSF-GAMNSVLGLCWLKKYPSKLIAGSDN------------- 520 (793)
Q Consensus 465 d~~~Lasgs~-D---------G~I~VWd~~t~~~i~~l~~~-~h~~~V~sv~fs~~~g~~Lasgs~D------------- 520 (793)
++.+++.|+. + ..+.+||..+.+....-... .......++. .++.+++.|+.+
T Consensus 65 ~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~---~~~~iyv~GG~~~~~~~~~~~~~~~ 141 (357)
T 2uvk_A 65 DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFV---HNGKAYVTGGVNQNIFNGYFEDLNE 141 (357)
T ss_dssp TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEEE---ETTEEEEEECCCHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCcccccceEEE---ECCEEEEEeCcCCCcCcccccchhh
Confidence 4567777775 2 46899999887655432221 1111222222 366777888754
Q ss_pred --------------------------CcEEEEEcCCCCCcccccccCCceeEecCCCCe-EEEEEccCCCEEEEEEC---
Q 003822 521 --------------------------GSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQL-TSVHVNSMDELFLASGY--- 570 (793)
Q Consensus 521 --------------------------gtV~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V-~sv~~s~~~~~lla~g~--- 570 (793)
..+.+||..+.+-... . .......- .+++. -.+..++.+|.
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~--~------~~p~~~~~~~~~~~-~~~~iyv~GG~~~~ 212 (357)
T 2uvk_A 142 AGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQWSYA--G------ESPWYGTAGAAVVN-KGDKTWLINGEAKP 212 (357)
T ss_dssp HTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETTTTEEEEE--E------ECSSCCCBSCEEEE-ETTEEEEECCEEET
T ss_pred cCCcccchhhhhhhhccccccccCCcccEEEEeCCCCcEEEC--C------CCCCCCcccccEEE-ECCEEEEEeeecCC
Confidence 4688888877543111 1 00000011 12222 24555555553
Q ss_pred ---CCcEEEEEC--CCCcEEEEEcccCC-C--CeEEEEEcCCCCcEEEEEeCC----------------------CeEEE
Q 003822 571 ---SKNIALYDI--NSGRRLQVFADMHK-E--HINVVKFSNHSPSIFATSSFD----------------------QDVKL 620 (793)
Q Consensus 571 ---Dg~I~IWDl--~tg~~l~~~~~gh~-~--~V~sv~fspdg~~~LaTgs~D----------------------g~IrI 620 (793)
...+.+||+ .+.+-...-..... . ....+.+ ++ .+++.|+.+ ..+.+
T Consensus 213 ~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 289 (357)
T 2uvk_A 213 GLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGIS--ND-SLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDI 289 (357)
T ss_dssp TEECCCEEEEECC---CEEEECCCSSTTTCCBSCEEEEE--TT-EEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEE
T ss_pred CcccCceEEEEecCCCCcEEecCCCCCCcccccceEEEE--CC-EEEEEcCccccCCcccccccceeccccccceeeEEE
Confidence 346778887 44332221110011 1 1112222 44 677777742 24789
Q ss_pred EECCCCCccceEEccCCCCeEEEEEecCCCEEEEEeCCC------eEEEEEcCCCcEEEEEe
Q 003822 621 WDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLVSAVDN------EVRQLLAVDGRVHLNFG 676 (793)
Q Consensus 621 WDlrt~~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs~Dg------~I~IwDl~tg~~~~~l~ 676 (793)
||+.+.....+..++...... .+..-+++.++.|+.++ .+.++++.+++.+....
T Consensus 290 yd~~~~~W~~~~~~p~~r~~~-~~~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~~ 350 (357)
T 2uvk_A 290 HLWHNGKWDKSGELSQGRAYG-VSLPWNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQNL 350 (357)
T ss_dssp EECC---CEEEEECSSCCBSS-EEEEETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC-
T ss_pred EecCCCceeeCCCCCCCcccc-eeEEeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeeec
Confidence 999987666555544332221 22334678888887542 45667888887755443
No 439
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=93.10 E-value=0.032 Score=63.56 Aligned_cols=105 Identities=15% Similarity=0.211 Sum_probs=67.8
Q ss_pred cceeEEeccCCchhhHHHHHhhcCCceeeEeecccccccccc---cccccceeeEEeeccccccccccccccccccccce
Q 003822 100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLN---MIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLIC 176 (793)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (793)
.+||..||+++.+..-.-..+ .+=-+=+.|+|+.+++..+. ..+...+|.+|+|.++..++.++..-|..|++|+.
T Consensus 74 ~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~ 152 (549)
T 2z81_A 74 GSLEHLDLSDNHLSSLSSSWF-GPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNE 152 (549)
T ss_dssp TTCCEEECTTSCCCSCCHHHH-TTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEE
T ss_pred ccCCEEECCCCccCccCHHHh-ccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCe
Confidence 478888888876543221111 11113367888888887653 45677788888888777778888778888888888
Q ss_pred eccccccchhhhHHHHHHhcCCcccceecce
Q 003822 177 LSMCETRVGNLWTTIAALSKLPSLAELRFQN 207 (793)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (793)
|++-+.++... ...++.++++|++|.+..
T Consensus 153 L~L~~n~l~~~--~~~~l~~l~~L~~L~l~~ 181 (549)
T 2z81_A 153 LEIKALSLRNY--QSQSLKSIRDIHHLTLHL 181 (549)
T ss_dssp EEEEETTCCEE--CTTTTTTCSEEEEEEEEC
T ss_pred eeccCCccccc--ChhhhhccccCceEeccc
Confidence 88776655432 123455666666666544
No 440
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=93.09 E-value=0.034 Score=59.06 Aligned_cols=105 Identities=17% Similarity=0.216 Sum_probs=64.7
Q ss_pred cceeEEeccCCchhhH-HHHHhhcCCceeeEeecccccccccccccccceeeEEeeccccccccccccccccccccceec
Q 003822 100 QKLRVVDLHDSSFGKD-FIRNLSQRGLMCEVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLS 178 (793)
Q Consensus 100 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (793)
.+|+.++|.++.++.. .....+.+=-.=+.|+|+.+++..+.- +-+.+|.+|+|.++ .++.+....|..||+|+.|+
T Consensus 145 ~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~-~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~ 222 (330)
T 1xku_A 145 NQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ-GLPPSLTELHLDGN-KITKVDAASLKGLNNLAKLG 222 (330)
T ss_dssp TTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCS-SCCTTCSEEECTTS-CCCEECTGGGTTCTTCCEEE
T ss_pred ccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCc-cccccCCEEECCCC-cCCccCHHHhcCCCCCCEEE
Confidence 4667777766655421 000111111133677777777766542 34577888888754 57777777888888888888
Q ss_pred cccccchhhhHHHHHHhcCCcccceeccee
Q 003822 179 MCETRVGNLWTTIAALSKLPSLAELRFQNW 208 (793)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (793)
+-..++..+- ..++.++++|++|.+..|
T Consensus 223 Ls~n~l~~~~--~~~~~~l~~L~~L~L~~N 250 (330)
T 1xku_A 223 LSFNSISAVD--NGSLANTPHLRELHLNNN 250 (330)
T ss_dssp CCSSCCCEEC--TTTGGGSTTCCEEECCSS
T ss_pred CCCCcCceeC--hhhccCCCCCCEEECCCC
Confidence 7777665431 235677888888877765
No 441
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=93.08 E-value=0.043 Score=63.68 Aligned_cols=102 Identities=18% Similarity=0.222 Sum_probs=79.2
Q ss_pred cceeEEeccCCchhhHHHHHhhcCCceeeEeeccccccccccc--ccccceeeEEeecccccccccccccccccccccee
Q 003822 100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLNM--IGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICL 177 (793)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (793)
.+|+..+|.++.+..-. ...+..=-+=+.|+|+.+.+..+.- .+.+.+|.+|+|.++ .++.+..+.|..||+|..|
T Consensus 99 ~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L 176 (597)
T 3oja_B 99 HTIQKLYMGFNAIRYLP-PHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNL 176 (597)
T ss_dssp TTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEE
T ss_pred CCCCEEECCCCcCCCCC-HHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCC-cCCCCChhhhhcCCcCcEE
Confidence 57999999998765411 1111111235789999999988764 578899999999965 7999999999999999999
Q ss_pred ccccccchhhhHHHHHHhcCCcccceeccee
Q 003822 178 SMCETRVGNLWTTIAALSKLPSLAELRFQNW 208 (793)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (793)
.+-+.++..+ .++.+|+|+.|.+..+
T Consensus 177 ~L~~N~l~~~-----~~~~l~~L~~L~l~~n 202 (597)
T 3oja_B 177 QLSSNRLTHV-----DLSLIPSLFHANVSYN 202 (597)
T ss_dssp ECTTSCCSBC-----CGGGCTTCSEEECCSS
T ss_pred ECcCCCCCCc-----ChhhhhhhhhhhcccC
Confidence 9998888765 3788999999987654
No 442
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=92.94 E-value=0.038 Score=58.78 Aligned_cols=76 Identities=17% Similarity=0.244 Sum_probs=31.7
Q ss_pred eEeecccccccccccccccceeeEEeeccccccccccccccccccccceeccccccchhhhHHHHHHhcCCcccceecc
Q 003822 128 EVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELRFQ 206 (793)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (793)
+.|+|+.+++..+.. +-|.+|.+|+|. ...|+.++.+.|..||+|+.|.+-..++...-....++..+ +|++|.+.
T Consensus 105 ~~L~L~~n~l~~l~~-~~~~~L~~L~l~-~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~ 180 (332)
T 2ft3_A 105 QKLYISKNHLVEIPP-NLPSSLVELRIH-DNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRIS 180 (332)
T ss_dssp CEEECCSSCCCSCCS-SCCTTCCEEECC-SSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCC
T ss_pred CEEECCCCcCCccCc-cccccCCEEECC-CCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECc
Confidence 344444444443321 122444444444 22344444444444455554444444443333333333333 44444443
No 443
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=92.91 E-value=2.9 Score=49.31 Aligned_cols=199 Identities=10% Similarity=0.061 Sum_probs=106.4
Q ss_pred CCCEEEEEeCC----CeEEEEECCCCeEEEEE-e-----ccCCCCCEEEEEEeeCCCCEEEEEEcCC------cEEEEEc
Q 003822 465 ISCLMVFGTLD----GEIVVVNHENENIVSYI-P-----SFGAMNSVLGLCWLKKYPSKLIAGSDNG------SLKLYDI 528 (793)
Q Consensus 465 d~~~Lasgs~D----G~I~VWd~~t~~~i~~l-~-----~~~h~~~V~sv~fs~~~g~~Lasgs~Dg------tV~vWDl 528 (793)
++.+++.|+.+ ..+.+||..+++....- + ....... .+++..+.++..++.||.++ .+.+||.
T Consensus 397 ~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~-hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 397 GNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMC-HTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp SSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBS-CEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred CCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccc-eEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 56788888854 46889999887655433 2 1111111 22222211667777777543 4778888
Q ss_pred CCCCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEECC--CcEEEEECCCCcEEEEEcc----cCCCCeEEEEEc
Q 003822 529 RHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYS--KNIALYDINSGRRLQVFAD----MHKEHINVVKFS 602 (793)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~D--g~I~IWDl~tg~~l~~~~~----gh~~~V~sv~fs 602 (793)
.+..- ....... . ...-.+++....+..++.||.+ +.+.+||..+.+-...-.. .......++.+.
T Consensus 476 ~t~~W--~~~~~~p-~-----~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~ 547 (695)
T 2zwa_A 476 KTREW--SMIKSLS-H-----TRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFD 547 (695)
T ss_dssp TTTEE--EECCCCS-B-----CCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEE
T ss_pred CCCcE--EECCCCC-C-----CcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEe
Confidence 77432 1111000 0 0011122221366677777754 3799999998764332210 011122335556
Q ss_pred CCCCcEEEEEeC--C-----CeEEEEECCCCC------ccceEEcc-CCCCeEEEEEecCCCEEEEEeC--------CCe
Q 003822 603 NHSPSIFATSSF--D-----QDVKLWDLRQKP------IQPCYTAS-SSKGNVMVCFSPDDHYLLVSAV--------DNE 660 (793)
Q Consensus 603 pdg~~~LaTgs~--D-----g~IrIWDlrt~~------~~~~~~l~-~~~~~vsv~fSpdg~~Lasgs~--------Dg~ 660 (793)
...+.+++.|+. + ..+.+||+.+.. ...+...+ ......++....+++.++.|+. ...
T Consensus 548 ~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~ 627 (695)
T 2zwa_A 548 PVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNS 627 (695)
T ss_dssp TTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTS
T ss_pred CCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCe
Confidence 552378888876 2 358999998876 23222211 1111113333444777777764 346
Q ss_pred EEEEEcCCCcEE
Q 003822 661 VRQLLAVDGRVH 672 (793)
Q Consensus 661 I~IwDl~tg~~~ 672 (793)
+.+||..+.+..
T Consensus 628 v~~yd~~t~~W~ 639 (695)
T 2zwa_A 628 IISLDPLSETLT 639 (695)
T ss_dssp EEEEETTTTEEE
T ss_pred EEEEECCCCeEE
Confidence 899999887654
No 444
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=92.78 E-value=7.8 Score=40.10 Aligned_cols=193 Identities=11% Similarity=0.122 Sum_probs=97.8
Q ss_pred CCCEEEEEeC----CC-------eEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcC-------CcEEEE
Q 003822 465 ISCLMVFGTL----DG-------EIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDN-------GSLKLY 526 (793)
Q Consensus 465 d~~~Lasgs~----DG-------~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~D-------gtV~vW 526 (793)
++.+++.|+. ++ .+.+||..+.+....-........ .+++. .++..++.|+.+ ..+.+|
T Consensus 56 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~y 132 (318)
T 2woz_A 56 QNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCL-FGLGE--VDDKIYVVAGKDLQTEASLDSVLCY 132 (318)
T ss_dssp SSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCS-CEEEE--ETTEEEEEEEEBTTTCCEEEEEEEE
T ss_pred CCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccc-cceEE--ECCEEEEEcCccCCCCcccceEEEE
Confidence 6678888883 12 277889888765443222111111 22222 256677777754 247778
Q ss_pred EcCCCCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEEC------CCcEEEEECCCCcEEEEEcccCC-CCeEEE
Q 003822 527 DIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGY------SKNIALYDINSGRRLQVFADMHK-EHINVV 599 (793)
Q Consensus 527 Dl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~------Dg~I~IWDl~tg~~l~~~~~gh~-~~V~sv 599 (793)
|..+.+-. ...... .....| ..+. .++..++.||. -..+.+||+.+.+-...-..... .....+
T Consensus 133 d~~~~~W~--~~~~~p-~~r~~~----~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~ 203 (318)
T 2woz_A 133 DPVAAKWS--EVKNLP-IKVYGH----NVIS--HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVA 203 (318)
T ss_dssp ETTTTEEE--EECCCS-SCEESC----EEEE--ETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEE
T ss_pred eCCCCCEe--ECCCCC-Cccccc----EEEE--ECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEE
Confidence 87765421 111100 001111 1222 24555566653 24599999998764332110111 111223
Q ss_pred EEcCCCCcEEEEEeCC-----CeEEEEECCCCCccceEEccCCCCeEEEEEecCCCEEEEEeCC--------------Ce
Q 003822 600 KFSNHSPSIFATSSFD-----QDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLVSAVD--------------NE 660 (793)
Q Consensus 600 ~fspdg~~~LaTgs~D-----g~IrIWDlrt~~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs~D--------------g~ 660 (793)
.+ ++ .+++.|+.+ ..+.+||+.+.....+...+......++. .-+++.++.|+.+ ..
T Consensus 204 ~~--~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~-~~~~~i~v~GG~~~~~~~~~~~~~~~~~~ 279 (318)
T 2woz_A 204 IH--KG-KIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLV-SLAGSLYAIGGFAMIQLESKEFAPTEVND 279 (318)
T ss_dssp EE--TT-EEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEEE-EETTEEEEECCBCCBC----CCBCCBCCC
T ss_pred EE--CC-EEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEEE-EECCEEEEECCeeccCCCCceeccceeee
Confidence 33 44 677777754 34788999887544433332222211222 2356666666643 35
Q ss_pred EEEEEcCCCcEEE
Q 003822 661 VRQLLAVDGRVHL 673 (793)
Q Consensus 661 I~IwDl~tg~~~~ 673 (793)
+.+||..+.+...
T Consensus 280 v~~yd~~~~~W~~ 292 (318)
T 2woz_A 280 IWKYEDDKKEWAG 292 (318)
T ss_dssp EEEEETTTTEEEE
T ss_pred EEEEeCCCCEehh
Confidence 7788888776533
No 445
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=92.77 E-value=0.14 Score=57.76 Aligned_cols=82 Identities=12% Similarity=0.120 Sum_probs=64.5
Q ss_pred eeeEeecccccccccccccccceeeEEeeccccccccccccccccccccceeccccccchhhhHHHHHHhcCCcccceec
Q 003822 126 MCEVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELRF 205 (793)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (793)
.-+.|+|+.+.+......+.+.+|.+|+|.++ .++......|..||+|+.|.+-..++..+=....++.+|++|++|..
T Consensus 303 ~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~L 381 (520)
T 2z7x_B 303 NIKNFTVSGTRMVHMLCPSKISPFLHLDFSNN-LLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDI 381 (520)
T ss_dssp CCSEEEEESSCCCCCCCCSSCCCCCEEECCSS-CCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEEC
T ss_pred ceeEEEcCCCccccccchhhCCcccEEEeECC-ccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEEC
Confidence 35667777666666555578899999999965 67776667889999999999988888765444567899999999998
Q ss_pred cee
Q 003822 206 QNW 208 (793)
Q Consensus 206 ~~~ 208 (793)
..|
T Consensus 382 s~N 384 (520)
T 2z7x_B 382 SQN 384 (520)
T ss_dssp CSS
T ss_pred CCC
Confidence 765
No 446
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=92.75 E-value=0.053 Score=61.38 Aligned_cols=103 Identities=17% Similarity=0.216 Sum_probs=45.1
Q ss_pred cceeEEeccCCchhh-HHHHHhhcCCceeeEeecccccccc-cc--cccccceeeEEeeccccccccccccccccccccc
Q 003822 100 QKLRVVDLHDSSFGK-DFIRNLSQRGLMCEVLNLRSSRFRK-LN--MIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLI 175 (793)
Q Consensus 100 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (793)
.+|+..+|.++.+.. ..+-+.+..=-+=+.|+|+.+++.. +. ..+.+.+|.+|+|.++. ++.....++. ++|+
T Consensus 348 ~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~--~~L~ 424 (520)
T 2z7x_B 348 TELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNI-LTDTIFRCLP--PRIK 424 (520)
T ss_dssp SSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSC-CCGGGGGSCC--TTCC
T ss_pred CCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCC-CCcchhhhhc--ccCC
Confidence 457777777766653 1111111111123456666666554 33 22344555555555432 3221111111 4555
Q ss_pred eeccccccchhhhHHHHHHhcCCcccceeccee
Q 003822 176 CLSMCETRVGNLWTTIAALSKLPSLAELRFQNW 208 (793)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (793)
.|..-..++..+- ..+.+|++|++|....|
T Consensus 425 ~L~Ls~N~l~~ip---~~~~~l~~L~~L~L~~N 454 (520)
T 2z7x_B 425 VLDLHSNKIKSIP---KQVVKLEALQELNVASN 454 (520)
T ss_dssp EEECCSSCCCCCC---GGGGGCTTCCEEECCSS
T ss_pred EEECCCCcccccc---hhhhcCCCCCEEECCCC
Confidence 5555444444221 22335555555555443
No 447
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=92.74 E-value=0.094 Score=62.80 Aligned_cols=79 Identities=10% Similarity=0.057 Sum_probs=58.9
Q ss_pred eeEeecccccccccccccccceeeEEeeccccccccccccccccccccceeccccccchhhhHHHHHHhcCCcccceecc
Q 003822 127 CEVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELRFQ 206 (793)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (793)
=+.|+|+.+++....-.+.+.+|.+|+|.++. ++..... |..+|+|+.|++-..++... ...++.++++|++|.+.
T Consensus 180 L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~-l~~l~~L~~L~Ls~n~l~~~--~~~~l~~l~~L~~L~Ls 255 (768)
T 3rgz_A 180 LKHLAISGNKISGDVDVSRCVNLEFLDVSSNN-FSTGIPF-LGDCSALQHLDISGNKLSGD--FSRAISTCTELKLLNIS 255 (768)
T ss_dssp CCEEECCSSEEESCCBCTTCTTCCEEECCSSC-CCSCCCB-CTTCCSCCEEECCSSCCCSC--HHHHTTTCSSCCEEECC
T ss_pred CCEEECCCCcccccCCcccCCcCCEEECcCCc-CCCCCcc-cccCCCCCEEECcCCcCCCc--ccHHHhcCCCCCEEECC
Confidence 35667776666655555788899999998664 4443334 99999999999988877643 34688999999999998
Q ss_pred eee
Q 003822 207 NWL 209 (793)
Q Consensus 207 ~~~ 209 (793)
.|-
T Consensus 256 ~n~ 258 (768)
T 3rgz_A 256 SNQ 258 (768)
T ss_dssp SSC
T ss_pred CCc
Confidence 773
No 448
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=92.57 E-value=0.064 Score=61.03 Aligned_cols=103 Identities=21% Similarity=0.265 Sum_probs=56.5
Q ss_pred cceeEEeccCCchhhH---HHHHhhcCCceeeEeecccccccccc--cccccceeeEEeecccccccccccccccccccc
Q 003822 100 QKLRVVDLHDSSFGKD---FIRNLSQRGLMCEVLNLRSSRFRKLN--MIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNL 174 (793)
Q Consensus 100 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (793)
.+||.+||+.+.+..- .+..+ -.=+.|+|+.+++..+. ..+.+.+|++|+|.++ .++.+....|..|++|
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l----~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L 100 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRAC----ANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN-HLSSLSSSWFGPLSSL 100 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSC----TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCSCCHHHHTTCTTC
T ss_pred CCccEEECcCCccCccChhhhhcC----CcccEEECCCCCcCccChhhccccccCCEEECCCC-ccCccCHHHhccCCCC
Confidence 4677777776655421 11111 12356666666666553 2455566666666643 5666666666666666
Q ss_pred ceeccccccchhhhHHHHHHhcCCcccceeccee
Q 003822 175 ICLSMCETRVGNLWTTIAALSKLPSLAELRFQNW 208 (793)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (793)
+.|..-..++..+-. ..++.+|++|++|....|
T Consensus 101 ~~L~Ls~n~l~~~~~-~~~~~~l~~L~~L~L~~n 133 (549)
T 2z81_A 101 KYLNLMGNPYQTLGV-TSLFPNLTNLQTLRIGNV 133 (549)
T ss_dssp CEEECTTCCCSSSCS-SCSCTTCTTCCEEEEEES
T ss_pred cEEECCCCcccccch-hhhhhccCCccEEECCCC
Confidence 666666555543211 124556666666666554
No 449
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=92.50 E-value=0.032 Score=67.64 Aligned_cols=103 Identities=23% Similarity=0.398 Sum_probs=62.8
Q ss_pred cceeEEeccCCchh----hHHHHHhhcCCceeeEeeccccccccc--ccccccceeeEEeecccccccc--ccccccccc
Q 003822 100 QKLRVVDLHDSSFG----KDFIRNLSQRGLMCEVLNLRSSRFRKL--NMIGEFKRIHTLNLDYSTSLTS--FKEDCFSCM 171 (793)
Q Consensus 100 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 171 (793)
.+||+.||..+.+. .+.++.|. .=++|+|+.+++..+ ...+...+|++|+|.++ .++. +....|..+
T Consensus 48 ~~L~~LdLs~n~~~~~i~~~~f~~L~----~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~L 122 (844)
T 3j0a_A 48 EQLQLLELGSQYTPLTIDKEAFRNLP----NLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFC-GLSDAVLKDGYFRNL 122 (844)
T ss_dssp CSCSEEEECTTCCCCEECTTTTSSCT----TCCEEECTTCCCCEECTTSSCSCSSCCCEECTTC-CCSSCCSTTCCCSSC
T ss_pred ccCeEEeCCCCCCccccCHHHhcCCC----CCCEEECCCCcCcccCHhHccCCcccCEeeCcCC-CCCcccccCcccccc
Confidence 46777777776332 22222222 236777777777766 45566777777777755 4553 444567777
Q ss_pred cccceeccccccchhhhHHHHHHhcCCcccceeccee
Q 003822 172 PNLICLSMCETRVGNLWTTIAALSKLPSLAELRFQNW 208 (793)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (793)
++|+.|+.-...+..+- ...++++|++|++|.+..+
T Consensus 123 ~~L~~L~Ls~N~l~~~~-~~~~~~~L~~L~~L~Ls~N 158 (844)
T 3j0a_A 123 KALTRLDLSKNQIRSLY-LHPSFGKLNSLKSIDFSSN 158 (844)
T ss_dssp SSCCEEEEESCCCCCCC-CCGGGGTCSSCCEEEEESS
T ss_pred CCCCEEECCCCcccccc-cchhHhhCCCCCEEECCCC
Confidence 77777777666654432 1135677777777777654
No 450
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=92.45 E-value=0.051 Score=57.47 Aligned_cols=103 Identities=9% Similarity=0.114 Sum_probs=43.8
Q ss_pred cceeEEeccCCchhhHHHHHhhcCCceeeEeeccccccccc--ccccccceeeEEeecccccccccccccccccccccee
Q 003822 100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKL--NMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICL 177 (793)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (793)
.+|+..+|..+.+....-..+..---.=+.|+|+.+++... ...+.. +|.+|+|.+ ..++.....-|.-||+|+.|
T Consensus 149 ~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l-~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L 226 (313)
T 1ogq_A 149 PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSR-NMLEGDASVLFGSDKNTQKI 226 (313)
T ss_dssp TTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC-CCSEEECCS-SEEEECCGGGCCTTSCCSEE
T ss_pred CCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCC-cccEEECcC-CcccCcCCHHHhcCCCCCEE
Confidence 46666666666554222222211100224555555554411 111112 155555553 23444444455555555555
Q ss_pred ccccccchhhhHHHHHHhcCCcccceecce
Q 003822 178 SMCETRVGNLWTTIAALSKLPSLAELRFQN 207 (793)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (793)
.+-..++... ...+..+++|++|.++.
T Consensus 227 ~L~~N~l~~~---~~~~~~l~~L~~L~Ls~ 253 (313)
T 1ogq_A 227 HLAKNSLAFD---LGKVGLSKNLNGLDLRN 253 (313)
T ss_dssp ECCSSEECCB---GGGCCCCTTCCEEECCS
T ss_pred ECCCCceeee---cCcccccCCCCEEECcC
Confidence 5544444321 11234445555554443
No 451
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=92.26 E-value=0.069 Score=64.93 Aligned_cols=103 Identities=9% Similarity=0.172 Sum_probs=65.1
Q ss_pred cceeEEeccCCc-hhh----HHHHHhh---cCCceeeEeeccccccccccc---ccccceeeEEeecccccccccccccc
Q 003822 100 QKLRVVDLHDSS-FGK----DFIRNLS---QRGLMCEVLNLRSSRFRKLNM---IGEFKRIHTLNLDYSTSLTSFKEDCF 168 (793)
Q Consensus 100 ~~~~~~~~~~~~-~~~----~~~~~~~---~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (793)
.+|+..+|.++. +.. +.+..|. ..--+=+.|+|+.+++..+.- .+.+.+|.+|+|.++ .++.++ .|
T Consensus 515 ~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N-~l~~lp--~~ 591 (876)
T 4ecn_A 515 PELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHN-KVRHLE--AF 591 (876)
T ss_dssp SSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTS-CCCBCC--CC
T ss_pred CCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCC-Ccccch--hh
Confidence 367777777775 433 2223332 111134677777777776643 667777788888744 466776 67
Q ss_pred ccccccceeccccccchhhhHHHHHHhcCCc-ccceeccee
Q 003822 169 SCMPNLICLSMCETRVGNLWTTIAALSKLPS-LAELRFQNW 208 (793)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 208 (793)
..||+|+.|.+-..++.. .-.++.++++ |++|.+..|
T Consensus 592 ~~L~~L~~L~Ls~N~l~~---lp~~l~~l~~~L~~L~Ls~N 629 (876)
T 4ecn_A 592 GTNVKLTDLKLDYNQIEE---IPEDFCAFTDQVEGLGFSHN 629 (876)
T ss_dssp CTTSEESEEECCSSCCSC---CCTTSCEECTTCCEEECCSS
T ss_pred cCCCcceEEECcCCcccc---chHHHhhccccCCEEECcCC
Confidence 778888877777766652 2345777777 777777665
No 452
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=92.14 E-value=0.05 Score=62.14 Aligned_cols=105 Identities=19% Similarity=0.150 Sum_probs=71.0
Q ss_pred cceeEEeccCCchhhHHHHHhhcCCceeeEeecccccccccc--cccccceeeEEeecccccccccccccccccccccee
Q 003822 100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLN--MIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICL 177 (793)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (793)
..+|..||+++.+..---. -+.+=-+=++|+|+.+++..+. ..+.+.+|++|+|.++ .++.+..+.|.-+++|+.|
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L 105 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSY-SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKL 105 (570)
T ss_dssp SSCCEEECCSCCCCEECTT-TTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEE
T ss_pred ccccEEEccCCccCccChh-HhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCC-cCCccCHhhhcCccccccc
Confidence 4688888888765321100 0111112467888888887764 3567788888888854 5888888888888888888
Q ss_pred ccccccchhhhHHHHHHhcCCcccceeccee
Q 003822 178 SMCETRVGNLWTTIAALSKLPSLAELRFQNW 208 (793)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (793)
..-.+++..+-.. ++.+|++|++|.+..|
T Consensus 106 ~L~~n~l~~l~~~--~~~~l~~L~~L~L~~n 134 (570)
T 2z63_A 106 VAVETNLASLENF--PIGHLKTLKELNVAHN 134 (570)
T ss_dssp ECTTSCCCCSTTC--SCTTCTTCCEEECCSS
T ss_pred cccccccccCCCc--cccccccccEEecCCC
Confidence 8887777665321 3778888888888764
No 453
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=92.10 E-value=0.051 Score=63.83 Aligned_cols=62 Identities=18% Similarity=0.384 Sum_probs=35.5
Q ss_pred ccceeeEEeeccccccccccccccccccccceeccccccchhhhHHH------HHHhcCCcccceecce
Q 003822 145 EFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTI------AALSKLPSLAELRFQN 207 (793)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~ 207 (793)
.+.+|.+|+|.+ ..|+.+..+.|..+++|+.|.+-..++..+|... ..+..|++|++|.+..
T Consensus 478 ~l~~L~~L~Ls~-N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~ 545 (680)
T 1ziw_A 478 PLRNLTILDLSN-NNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLES 545 (680)
T ss_dssp TCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCS
T ss_pred cCCCCCEEECCC-CCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCC
Confidence 345566666663 3466666666666666666666666666555321 2255566666665544
No 454
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=92.09 E-value=0.11 Score=59.43 Aligned_cols=83 Identities=14% Similarity=0.127 Sum_probs=67.9
Q ss_pred ceeeEeecccccccccccccccceeeEEeeccccccccccccccccccccceeccccccchhhhHHHHHHhcCCccccee
Q 003822 125 LMCEVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELR 204 (793)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (793)
..-+.|+|+.+.+..+...+.+.+|++|+|..+ .++......|..||+|+.|.+-..++..+-....++.++++|++|.
T Consensus 331 ~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ 409 (562)
T 3a79_B 331 MNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQN-VFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLD 409 (562)
T ss_dssp CCCSEEEEESSCCCCCCCCSSCCCCCEEECCSS-CCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEE
T ss_pred CcceEEEccCCCcccccCccCCCCceEEECCCC-ccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEE
Confidence 345777888787777666688999999999954 6777666788999999999999988887766667789999999999
Q ss_pred ccee
Q 003822 205 FQNW 208 (793)
Q Consensus 205 ~~~~ 208 (793)
+..+
T Consensus 410 l~~N 413 (562)
T 3a79_B 410 VSLN 413 (562)
T ss_dssp CTTS
T ss_pred CCCC
Confidence 8765
No 455
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=92.07 E-value=0.057 Score=61.71 Aligned_cols=106 Identities=16% Similarity=0.148 Sum_probs=73.3
Q ss_pred cceeEEeccCCchhhHHHHHhhcCCceeeEeecccccccccc--cccccceeeEEeecccccccccccccccccccccee
Q 003822 100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLN--MIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICL 177 (793)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (793)
.+||+.||.++.+..- ..+.+.+=-.=+.|+|+.+++..+. ..+.+.+|.+|+|.++ .++.++...|..+++|+.|
T Consensus 52 ~~L~~L~Ls~n~i~~i-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L 129 (570)
T 2z63_A 52 PELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET-NLASLENFPIGHLKTLKEL 129 (570)
T ss_dssp SSCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTS-CCCCSTTCSCTTCTTCCEE
T ss_pred CCceEEECCCCcCCcc-CcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccccccc-ccccCCCccccccccccEE
Confidence 4688899988765421 0111111123478888888888774 5677888999999854 7888888889999999988
Q ss_pred ccccccchhhhHHHHHHhcCCcccceeccee
Q 003822 178 SMCETRVGNLWTTIAALSKLPSLAELRFQNW 208 (793)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (793)
..-...+..+ ..-.++.+|++|++|.+..|
T Consensus 130 ~L~~n~l~~~-~lp~~~~~l~~L~~L~l~~n 159 (570)
T 2z63_A 130 NVAHNLIQSF-KLPEYFSNLTNLEHLDLSSN 159 (570)
T ss_dssp ECCSSCCCCC-CCCGGGGGCTTCCEEECTTS
T ss_pred ecCCCcccee-cChhhhcccCCCCEEeCcCC
Confidence 8877665431 01245788888998888654
No 456
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=92.01 E-value=0.05 Score=62.44 Aligned_cols=57 Identities=16% Similarity=0.294 Sum_probs=31.0
Q ss_pred ceeeEEeeccccccccccccccccccccceeccccccchhhhHHHHHHhcCCcccceecce
Q 003822 147 KRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELRFQN 207 (793)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (793)
.+|++|+|.++ .|+.++.+-| .||+|..|.+-..++..+-.. ++..+++|++|.+..
T Consensus 450 ~~L~~L~L~~N-~l~~ip~~~~-~l~~L~~L~L~~N~l~~l~~~--~~~~l~~L~~L~l~~ 506 (562)
T 3a79_B 450 PKVKVLDLHNN-RIMSIPKDVT-HLQALQELNVASNQLKSVPDG--VFDRLTSLQYIWLHD 506 (562)
T ss_dssp TTCSEEECCSS-CCCCCCTTTT-SSCCCSEEECCSSCCCCCCTT--STTTCTTCCCEECCS
T ss_pred CcCCEEECCCC-cCcccChhhc-CCCCCCEEECCCCCCCCCCHH--HHhcCCCCCEEEecC
Confidence 35566666544 5556655555 566666666555555433222 355566666655543
No 457
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=91.94 E-value=0.062 Score=51.43 Aligned_cols=77 Identities=16% Similarity=0.235 Sum_probs=62.3
Q ss_pred eEeecccccccccccccccceeeEEeeccccccccccccccccccccceeccccccchhhhHHHHHHhcCCcccceecce
Q 003822 128 EVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELRFQN 207 (793)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (793)
+.|+++.+++..+- .+-+.+|++|+|. ...|+.+..+-|..|++|+.|.+=..++..+= ..++.+|++|++|.+..
T Consensus 12 ~~l~~s~n~l~~ip-~~~~~~l~~L~L~-~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~--~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 12 TTVDCSGKSLASVP-TGIPTTTQVLYLY-DNQITKLEPGVFDRLTQLTRLDLDNNQLTVLP--AGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TEEECTTSCCSSCC-SCCCTTCSEEECC-SSCCCCCCTTTTTTCTTCSEEECCSSCCCCCC--TTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCccC-ccCCCCCcEEEcC-CCcCCccChhhhcCcccCCEEECCCCCcCccC--hhhccCCCCCCEEECCC
Confidence 46778777777765 2346899999999 56899999999999999999999998887542 23578999999999876
Q ss_pred e
Q 003822 208 W 208 (793)
Q Consensus 208 ~ 208 (793)
.
T Consensus 88 N 88 (170)
T 3g39_A 88 N 88 (170)
T ss_dssp S
T ss_pred C
Confidence 4
No 458
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=91.69 E-value=0.08 Score=50.96 Aligned_cols=77 Identities=18% Similarity=0.298 Sum_probs=62.6
Q ss_pred eEeecccccccccccccccceeeEEeeccccccccccccccccccccceeccccccchhhhHHHHHHhcCCcccceecce
Q 003822 128 EVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELRFQN 207 (793)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (793)
..++++.+++..+-- +-+.+|.+|+|. ...|+.+..+-|.-|++|..|.+-..++..+ ...++.+|++|++|.+..
T Consensus 15 ~~l~~~~n~l~~iP~-~~~~~L~~L~Ls-~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i--~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNIRLASVPA-GIPTDKQRLWLN-NNQITKLEPGVFDHLVNLQQLYFNSNKLTAI--PTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSSCCSSCCS-CCCTTCSEEECC-SSCCCCCCTTTTTTCTTCCEEECCSSCCCCC--CTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCCCCCccCC-CcCCCCcEEEeC-CCCccccCHHHhcCCcCCCEEECCCCCCCcc--ChhHhCCcchhhEEECCC
Confidence 378888888877643 345899999999 4579999999999999999999999888764 223468999999998876
Q ss_pred e
Q 003822 208 W 208 (793)
Q Consensus 208 ~ 208 (793)
.
T Consensus 91 N 91 (174)
T 2r9u_A 91 N 91 (174)
T ss_dssp S
T ss_pred C
Confidence 4
No 459
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=91.51 E-value=0.057 Score=65.47 Aligned_cols=109 Identities=12% Similarity=0.061 Sum_probs=66.5
Q ss_pred hccceeEEeccCCchhhHHHHHhhcCCceeeEeeccccc-cccc--ccccccceeeEEeecccccccccccccccccccc
Q 003822 98 IDQKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSR-FRKL--NMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNL 174 (793)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (793)
+-.+||..||..+.+..-.-.. +.+=-.=++|+|+.+. +..+ +..+...+|.+|+|.+ ++|+.+..+.|.-|++|
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~-~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~-N~l~~~~p~~~~~l~~L 99 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASS-FPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS-SKIYFLHPDAFQGLFHL 99 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSS-CSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTT-CCCCEECTTSSCSCSSC
T ss_pred CCCCcCEEECCCCcCCccChhH-CcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCC-CcCcccCHhHccCCccc
Confidence 3357788888776553211000 1111123677777663 2232 2356667788888874 46777777888888888
Q ss_pred ceeccccccchhhhHHHHHHhcCCcccceeccee
Q 003822 175 ICLSMCETRVGNLWTTIAALSKLPSLAELRFQNW 208 (793)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (793)
+.|.+-..++.+.-....++.+|++|++|.+..|
T Consensus 100 ~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N 133 (844)
T 3j0a_A 100 FELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKN 133 (844)
T ss_dssp CCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESC
T ss_pred CEeeCcCCCCCcccccCccccccCCCCEEECCCC
Confidence 8887777776653222334777888888877665
No 460
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=91.50 E-value=26 Score=41.11 Aligned_cols=229 Identities=10% Similarity=0.103 Sum_probs=129.2
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEec--cCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCC
Q 003822 456 PRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPS--FGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPP 533 (793)
Q Consensus 456 V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~--~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~ 533 (793)
|++|.-.. +|. |-.|+.+| +..||-.+ ...+.. ......|.++.-. . ...|..|+.+| +..||..+...
T Consensus 24 V~~I~qD~-~G~-lWigT~~G-L~ryDG~~---~~~~~~~~~~~~~~i~~i~~d-~-~g~lWigT~~G-l~~yd~~~~~f 94 (758)
T 3ott_A 24 VSCFLQDS-EGL-IWIGSNKG-LFSYDGYS---TQQHFTYGENNNTRIYCGVII-D-NTYLYMGTDNG-ILVYNYRADRY 94 (758)
T ss_dssp EEEEEECT-TSC-EEEEESSC-EEEECSSC---EEECSCTTSTTSSCEEEEEEE-T-TTEEEEEETTE-EEEEETTTTEE
T ss_pred EEEEEECC-CCC-EEEEECCC-ccccCCCc---eEEEEccCCCCCceEEEEEEc-C-CCcEEEEeCCC-eEEEeCCCCEE
Confidence 88888887 664 55667777 55676432 111211 1123468887643 3 44677777665 78899876432
Q ss_pred cccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEc----ccCCCCeEEEEEcCCCCcEE
Q 003822 534 SIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFA----DMHKEHINVVKFSNHSPSIF 609 (793)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~----~gh~~~V~sv~fspdg~~~L 609 (793)
.. .. . .....|.++.. .++.+.+++.+ .+..+|..+++.. .+. ......|.++...+++ .+.
T Consensus 95 ~~--~~--~-----~~~~~i~~i~~--~~g~lWigt~~-Gl~~~~~~~~~~~-~~~~~~~~l~~~~i~~i~~d~~g-~lW 160 (758)
T 3ott_A 95 EQ--PE--T-----DFPTDVRTMAL--QGDTLWLGALN-GLYTYQLQSRKLT-SFDTRRNGLPNNTIYSIIRTKDN-QIY 160 (758)
T ss_dssp CC--CS--C-----CCCSCEEEEEE--ETTEEEEEETT-EEEEEETTTCCEE-EECHHHHCCSCSCEEEEEECTTC-CEE
T ss_pred EC--cc--c-----CCCceEEEEEe--cCCcEEEEcCC-cceeEeCCCCeEE-EeccCCCCcCCCeEEEEEEcCCC-CEE
Confidence 11 00 0 01134666654 35667777655 6888998876543 331 1123568888888777 444
Q ss_pred EEEeCCCeEEEEECCCCCccceEEccC-----CCCeEEEEEecCCCEEEEEeCCCeEEEEEcCCCcEEEEEeeecCCCCC
Q 003822 610 ATSSFDQDVKLWDLRQKPIQPCYTASS-----SKGNVMVCFSPDDHYLLVSAVDNEVRQLLAVDGRVHLNFGITATGSSQ 684 (793)
Q Consensus 610 aTgs~Dg~IrIWDlrt~~~~~~~~l~~-----~~~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~tg~~~~~l~~~~~~~~~ 684 (793)
+ |+.+ -+..+|..+..... +..+. ...+.++...+++..|.+|+. +-+..+|..+++... +... ....
T Consensus 161 i-gt~~-Gl~~~~~~~~~~~~-~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~-~~~l--~~~~ 233 (758)
T 3ott_A 161 V-GTYN-GLCRYIPSNGKFEG-IPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQ-TEAF--HNNS 233 (758)
T ss_dssp E-EETT-EEEEEETTTTEEEE-ECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEE-EEEE--EEEE
T ss_pred E-EeCC-CHhhCccCCCceEE-ecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEe-ccCC--CCCe
Confidence 3 5544 47788877653211 11111 112345777777776666664 458889988775432 2111 1223
Q ss_pred cEEEEEeeCCCeEEEEEeCCCcEEEEEEcCCCcE
Q 003822 685 NYTRSYYLNGRDYIVSGSCDEHVVRICCAQTGRR 718 (793)
Q Consensus 685 v~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg~~ 718 (793)
+.++....+|. |..|+.+ -+ .+++..+++.
T Consensus 234 i~~i~~d~~g~--lWigT~~-Gl-~~~~~~~~~~ 263 (758)
T 3ott_A 234 IKSLALDGNGD--LLAGTDN-GL-YVYHNDTTPL 263 (758)
T ss_dssp EEEEEECTTCC--EEEEETT-EE-EEECCTTSCC
T ss_pred EEEEEEcCCCC--EEEEeCC-ce-eEEecCCCcE
Confidence 55555555665 5555544 56 7888877654
No 461
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=91.48 E-value=0.061 Score=64.12 Aligned_cols=100 Identities=19% Similarity=0.185 Sum_probs=55.5
Q ss_pred cceeEEeccCCchhhHHHHHhhcCCceeeEeecccccccccc-cccccceeeEEeeccccccccccccccccccccceec
Q 003822 100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLN-MIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLS 178 (793)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (793)
.+|+..||..+.+. ..-.+++ .--.=+.|+|+.++|..+- -.|.+.+|.+|+|.++ .|+.|++ .|..|++|..|.
T Consensus 224 ~~L~~L~Ls~n~l~-~l~~~~~-~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp~-~~~~l~~L~~L~ 299 (727)
T 4b8c_D 224 QLWHALDLSNLQIF-NISANIF-KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHN-RLTSLPA-ELGSCFQLKYFY 299 (727)
T ss_dssp CCCCEEECTTSCCS-CCCGGGG-GCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTS-CCSSCCS-SGGGGTTCSEEE
T ss_pred CCCcEEECCCCCCC-CCChhhc-CCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCC-cCCccCh-hhcCCCCCCEEE
Confidence 45666666665544 1111222 1123456666666666552 2456666777777743 3666643 366677777776
Q ss_pred cccccchhhhHHHHHHhcCCcccceecc
Q 003822 179 MCETRVGNLWTTIAALSKLPSLAELRFQ 206 (793)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (793)
+-..++..| -..+.+|++|++|.+.
T Consensus 300 L~~N~l~~l---p~~~~~l~~L~~L~L~ 324 (727)
T 4b8c_D 300 FFDNMVTTL---PWEFGNLCNLQFLGVE 324 (727)
T ss_dssp CCSSCCCCC---CSSTTSCTTCCCEECT
T ss_pred CCCCCCCcc---ChhhhcCCCccEEeCC
Confidence 666655533 1236666666666654
No 462
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=91.40 E-value=0.1 Score=61.29 Aligned_cols=102 Identities=24% Similarity=0.348 Sum_probs=61.3
Q ss_pred cceeEEeccCCchhh---HHHHHhhcCCceeeEeeccccccccccc--ccccceeeEEeecccccccccccccccccccc
Q 003822 100 QKLRVVDLHDSSFGK---DFIRNLSQRGLMCEVLNLRSSRFRKLNM--IGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNL 174 (793)
Q Consensus 100 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (793)
.+||.+||..+.+.. +++..|. .=++|+|+.+++..+.- .+...+|.+|+|.++ .++.+..+.|..|++|
T Consensus 49 ~~L~~L~Ls~n~l~~~~~~~~~~l~----~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L 123 (680)
T 1ziw_A 49 SQLTSLDVGFNTISKLEPELCQKLP----MLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSN-SIQKIKNNPFVKQKNL 123 (680)
T ss_dssp TTCSEEECCSSCCCCCCTTHHHHCT----TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCSCTTTTCTTC
T ss_pred CcCcEEECCCCccCccCHHHHhccc----CcCEEECCCCccCccChhhhccCCCCCEEECCCC-ccCccChhHccccCCC
Confidence 467777777655432 2333332 23667777777666653 566667777777744 5677777777777777
Q ss_pred ceeccccccchhhhHHHHHHhcCCcccceeccee
Q 003822 175 ICLSMCETRVGNLWTTIAALSKLPSLAELRFQNW 208 (793)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (793)
+.|..-...+..+ ...++.+|++|++|.+..+
T Consensus 124 ~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~L~~n 155 (680)
T 1ziw_A 124 ITLDLSHNGLSST--KLGTQVQLENLQELLLSNN 155 (680)
T ss_dssp CEEECCSSCCSCC--CCCSSSCCTTCCEEECCSS
T ss_pred CEEECCCCccccc--CchhhcccccCCEEEccCC
Confidence 7776666554432 1234556777777766654
No 463
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=91.39 E-value=20 Score=39.63 Aligned_cols=107 Identities=11% Similarity=0.194 Sum_probs=62.8
Q ss_pred CCeEEEEEcCCCCcEEEEEeCCCeEEEEECCCCCccceEEcc-------CCCCeEEEEEecC---CCEEEEEeC------
Q 003822 594 EHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTAS-------SSKGNVMVCFSPD---DHYLLVSAV------ 657 (793)
Q Consensus 594 ~~V~sv~fspdg~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~-------~~~~~vsv~fSpd---g~~Lasgs~------ 657 (793)
...+.++|.|+| .++++-...+.|++++..++....+..+. +..+...++|+|+ +.+|+++..
T Consensus 27 ~~P~~~a~~pdG-~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 27 NKPHALLWGPDN-QIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp SSEEEEEECTTS-CEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCceEEEEcCCC-cEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence 456799999999 67766544457888886655444333332 2345567999996 666655542
Q ss_pred -------CCeEEEEEcCCC--cE---EEEEe-eecCCCCCcEEEEEeeCCCeEEEEE
Q 003822 658 -------DNEVRQLLAVDG--RV---HLNFG-ITATGSSQNYTRSYYLNGRDYIVSG 701 (793)
Q Consensus 658 -------Dg~I~IwDl~tg--~~---~~~l~-~~~~~~~~v~s~afspdg~~~L~Sg 701 (793)
...|.-|+...+ +. ...+. ......+....++|.|||..|+.+|
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence 235655655332 21 11121 1112234577899999998444444
No 464
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=90.88 E-value=0.12 Score=54.52 Aligned_cols=106 Identities=9% Similarity=0.133 Sum_probs=75.8
Q ss_pred cceeEEeccCCchhhHHHHHhhcCCceeeEeeccccccc-cc-ccccccc-eeeEEeeccccccccccccccccccccce
Q 003822 100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFR-KL-NMIGEFK-RIHTLNLDYSTSLTSFKEDCFSCMPNLIC 176 (793)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (793)
.+|+..||..+.+....-..+. .=-+=+.|+|+.+++. .+ .-.+.+. +|.+|+|.+ ..++......|..|+ |+.
T Consensus 125 ~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~-N~l~~~~~~~~~~l~-L~~ 201 (313)
T 1ogq_A 125 KTLVTLDFSYNALSGTLPPSIS-SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISR-NRLTGKIPPTFANLN-LAF 201 (313)
T ss_dssp TTCCEEECCSSEEESCCCGGGG-GCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCS-SEEEEECCGGGGGCC-CSE
T ss_pred CCCCEEeCCCCccCCcCChHHh-cCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcC-CeeeccCChHHhCCc-ccE
Confidence 6899999999877632211111 1123578999998886 32 3456666 899999995 467766677788887 999
Q ss_pred eccccccchhhhHHHHHHhcCCcccceecceeee
Q 003822 177 LSMCETRVGNLWTTIAALSKLPSLAELRFQNWLC 210 (793)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (793)
|.+-..++... ...++.++++|++|.+..+--
T Consensus 202 L~Ls~N~l~~~--~~~~~~~l~~L~~L~L~~N~l 233 (313)
T 1ogq_A 202 VDLSRNMLEGD--ASVLFGSDKNTQKIHLAKNSL 233 (313)
T ss_dssp EECCSSEEEEC--CGGGCCTTSCCSEEECCSSEE
T ss_pred EECcCCcccCc--CCHHHhcCCCCCEEECCCCce
Confidence 99988877653 345678999999999987654
No 465
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=90.86 E-value=0.087 Score=56.58 Aligned_cols=74 Identities=20% Similarity=0.278 Sum_probs=57.9
Q ss_pred eeEeeccccccccccc-ccccceeeEEeeccccccccccccccccccccceeccccccchhhhHHHHHHhcCCcccc
Q 003822 127 CEVLNLRSSRFRKLNM-IGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAE 202 (793)
Q Consensus 127 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (793)
=+.|+|+.++++.+.- +....+|.+|+|..+..++.++.+.|.-|++|+.|.+-.+++..|=. .++.+|++|+.
T Consensus 156 l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~--~~~~~L~~L~~ 230 (350)
T 4ay9_X 156 SVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS--YGLENLKKLRA 230 (350)
T ss_dssp CEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCS--SSCTTCCEEEC
T ss_pred hhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccCh--hhhccchHhhh
Confidence 4678999999988742 34557899999988999999999999999999999999999876632 23444444443
No 466
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=90.71 E-value=0.14 Score=62.15 Aligned_cols=103 Identities=19% Similarity=0.269 Sum_probs=58.8
Q ss_pred ceeEEeccCCchhhHHHHHhh-----cCCceeeEeeccccccccccc--ccccceeeEEeecccccccccccccccccc-
Q 003822 101 KLRVVDLHDSSFGKDFIRNLS-----QRGLMCEVLNLRSSRFRKLNM--IGEFKRIHTLNLDYSTSLTSFKEDCFSCMP- 172 (793)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 172 (793)
+|+.++|.++.+.... ..+. ..+.+=+.|+|+.+++..+.. ...+.+|..|+|..+ .|+.++...|..++
T Consensus 645 ~L~~L~Ls~N~l~g~i-p~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~~~~~~ 722 (876)
T 4ecn_A 645 VMGSVDFSYNKIGSEG-RNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNN-LMTSIPENSLKPKDG 722 (876)
T ss_dssp CEEEEECCSSCTTTTS-SSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSC-CCSCCCTTSSSCTTS
T ss_pred CCCEEECcCCcCCCcc-ccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCC-cCCccChHHhccccc
Confidence 4777777777664321 1111 122345667777777665432 124567777777743 66677777666543
Q ss_pred ------ccceeccccccchhhhHHHHHHh--cCCcccceeccee
Q 003822 173 ------NLICLSMCETRVGNLWTTIAALS--KLPSLAELRFQNW 208 (793)
Q Consensus 173 ------~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 208 (793)
+|..|.+...++..+ -..+. .||+|++|.+..|
T Consensus 723 ~l~nl~~L~~L~Ls~N~L~~l---p~~l~~~~l~~L~~L~Ls~N 763 (876)
T 4ecn_A 723 NYKNTYLLTTIDLRFNKLTSL---SDDFRATTLPYLSNMDVSYN 763 (876)
T ss_dssp CCTTGGGCCEEECCSSCCCCC---CGGGSTTTCTTCCEEECCSS
T ss_pred cccccCCccEEECCCCCCccc---hHHhhhccCCCcCEEEeCCC
Confidence 677776666665533 23343 6677777776654
No 467
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=90.67 E-value=0.25 Score=56.54 Aligned_cols=126 Identities=17% Similarity=0.283 Sum_probs=66.5
Q ss_pred cceeEEeecCCccccchHHHHHHHHHhccceeEEeccCC-chhhHHHHHhhcCCceeeEeecccccccccc------ccc
Q 003822 72 EIEAVDVRSGTSCMLTGEFALSLMHAIDQKLRVVDLHDS-SFGKDFIRNLSQRGLMCEVLNLRSSRFRKLN------MIG 144 (793)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~ 144 (793)
.++.+|+.. |.+.++-.-.+.+.. .+|+..+|... .++...+..+...--+=+.|+|+.+.+.... +..
T Consensus 106 ~L~~L~L~~---~~~~~~~~~~l~~~~-~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~ 181 (594)
T 2p1m_B 106 WLEEIRLKR---MVVTDDCLELIAKSF-KNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPD 181 (594)
T ss_dssp TCCEEEEES---CBCCHHHHHHHHHHC-TTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCT
T ss_pred CCCeEEeeC---cEEcHHHHHHHHHhC-CCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhh
Confidence 455666643 335555444443332 47777777766 5555555555432223356677666644322 223
Q ss_pred ccceeeEEeecccccccccccccc----ccccccceeccccc-cchhhhHHHHHHhcCCcccceecc
Q 003822 145 EFKRIHTLNLDYSTSLTSFKEDCF----SCMPNLICLSMCET-RVGNLWTTIAALSKLPSLAELRFQ 206 (793)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 206 (793)
.+++|++|+|.++. +.+....| ..+|+|+.|++... .+.. ....+.++|+|++|...
T Consensus 182 ~~~~L~~L~l~~~~--~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~---l~~~~~~~~~L~~L~l~ 243 (594)
T 2p1m_B 182 TYTSLVSLNISCLA--SEVSFSALERLVTRCPNLKSLKLNRAVPLEK---LATLLQRAPQLEELGTG 243 (594)
T ss_dssp TCCCCCEEECTTCC--SCCCHHHHHHHHHHCTTCCEEECCTTSCHHH---HHHHHHHCTTCSEEECS
T ss_pred cCCcCcEEEecccC--CcCCHHHHHHHHHhCCCCcEEecCCCCcHHH---HHHHHhcCCcceEcccc
Confidence 45577777777664 22222222 22477777766544 2222 34455667777777643
No 468
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=90.58 E-value=5.4 Score=46.91 Aligned_cols=203 Identities=7% Similarity=0.054 Sum_probs=100.1
Q ss_pred CCCEEEEEEcC----CcEEEEEcCCCCCcccccccCCceeEecCCCCeEEEEEcc-CCCEEEEEECC------CcEEEEE
Q 003822 510 YPSKLIAGSDN----GSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNS-MDELFLASGYS------KNIALYD 578 (793)
Q Consensus 510 ~g~~Lasgs~D----gtV~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~-~~~~lla~g~D------g~I~IWD 578 (793)
++..++.||.+ ..+.+||..+..-........... ......-.+++..+ .+..++.||.+ ..+.+||
T Consensus 397 ~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~--~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd 474 (695)
T 2zwa_A 397 GNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSE--VPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFD 474 (695)
T ss_dssp SSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSC--CCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEE
T ss_pred CCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCC--CCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEe
Confidence 55666677643 357788887654321110000000 00000112223323 55566666642 3588999
Q ss_pred CCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeCCC--eEEEEECCCCCccceEE---ccCC-CCeEEEEEecC-CCE
Q 003822 579 INSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQ--DVKLWDLRQKPIQPCYT---ASSS-KGNVMVCFSPD-DHY 651 (793)
Q Consensus 579 l~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~Dg--~IrIWDlrt~~~~~~~~---l~~~-~~~vsv~fSpd-g~~ 651 (793)
..+.+-...-.-.....-.+++...++ .+++.|+.++ .+.+||..+.....+.. .+.. .....+.+..+ ++.
T Consensus 475 ~~t~~W~~~~~~p~~R~~h~~~~~~~~-~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~i 553 (695)
T 2zwa_A 475 MKTREWSMIKSLSHTRFRHSACSLPDG-NVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQG 553 (695)
T ss_dssp TTTTEEEECCCCSBCCBSCEEEECTTS-CEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEE
T ss_pred CCCCcEEECCCCCCCcccceEEEEcCC-EEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEE
Confidence 988654332110011111123332355 7888888755 69999998864333221 1111 11123556665 666
Q ss_pred EEEEeC--C-----CeEEEEEcCCCcE-----EEEEeeecCCCCCcEEEEEeeCCCeEEEEEeCC--------CcEEEEE
Q 003822 652 LLVSAV--D-----NEVRQLLAVDGRV-----HLNFGITATGSSQNYTRSYYLNGRDYIVSGSCD--------EHVVRIC 711 (793)
Q Consensus 652 Lasgs~--D-----g~I~IwDl~tg~~-----~~~l~~~~~~~~~v~s~afspdg~~~L~Sgs~D--------g~II~IW 711 (793)
++.|+. + +.+.+||+.+... ...+...+........++...++. +++.||.+ ..+ .+|
T Consensus 554 yv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~-iyv~GG~~~~~~~~~~~~v-~~y 631 (695)
T 2zwa_A 554 IILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRK-LLIVGGTSPSGLFDRTNSI-ISL 631 (695)
T ss_dssp EEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTE-EEEECCBCSSCCCCTTTSE-EEE
T ss_pred EEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCE-EEEECCccCCCCCCCCCeE-EEE
Confidence 677765 2 4688999988771 122221111111122333344365 66666643 346 889
Q ss_pred EcCCCc
Q 003822 712 CAQTGR 717 (793)
Q Consensus 712 Dv~tg~ 717 (793)
|..+.+
T Consensus 632 d~~t~~ 637 (695)
T 2zwa_A 632 DPLSET 637 (695)
T ss_dssp ETTTTE
T ss_pred ECCCCe
Confidence 988764
No 469
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=90.36 E-value=9.6 Score=43.36 Aligned_cols=236 Identities=11% Similarity=0.068 Sum_probs=128.0
Q ss_pred EEEEEeCCCeEEEEECCCCeEEEEEeccCC-----------------------CCCE--EEEEEee--CCCCEEEEEE-c
Q 003822 468 LMVFGTLDGEIVVVNHENENIVSYIPSFGA-----------------------MNSV--LGLCWLK--KYPSKLIAGS-D 519 (793)
Q Consensus 468 ~Lasgs~DG~I~VWd~~t~~~i~~l~~~~h-----------------------~~~V--~sv~fs~--~~g~~Lasgs-~ 519 (793)
.+.+|+..|.|+|+-+.+++.+..++.... .+.. ..+.+.. .+|++|+.-. .
T Consensus 72 ~f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdka 151 (638)
T 3sbq_A 72 GFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKA 151 (638)
T ss_dssp EEEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETT
T ss_pred EEeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCC
Confidence 467899999999999999998888764211 0000 1223210 1345666655 4
Q ss_pred CCcEEEEEcCCCCCcccccccCCceeEecCCCCeEEEEEc--cCCCEEEEEEC-------CCcE------------EEEE
Q 003822 520 NGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVN--SMDELFLASGY-------SKNI------------ALYD 578 (793)
Q Consensus 520 DgtV~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s--~~~~~lla~g~-------Dg~I------------~IWD 578 (793)
...|-..+++..++. ..+.......+.++.+. |..+++++.+. ||.. ...|
T Consensus 152 n~RvAri~l~~~~~d--------~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD 223 (638)
T 3sbq_A 152 NSRVARIRLDIMKCD--------KMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAID 223 (638)
T ss_dssp TTEEEEEETTTTEEE--------EEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEE
T ss_pred CcceEEEECCcEeec--------eeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEEEEc
Confidence 455666677665431 12233333556677765 56677777762 3331 1123
Q ss_pred CCCCcEEEEEcccCCCCeEEEEEcCCCCcEEEEEeCCC---------------eEEEEE---------------------
Q 003822 579 INSGRRLQVFADMHKEHINVVKFSNHSPSIFATSSFDQ---------------DVKLWD--------------------- 622 (793)
Q Consensus 579 l~tg~~l~~~~~gh~~~V~sv~fspdg~~~LaTgs~Dg---------------~IrIWD--------------------- 622 (793)
..+.+....+. -.+..-.+...+++ .+.++.+.+. .+.+++
T Consensus 224 ~~tm~v~~Qv~--v~gnld~~~~~~~g-~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv 300 (638)
T 3sbq_A 224 AETMEMAFQVI--VDGNLDNTDADYTG-RFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKT 300 (638)
T ss_dssp TTTCSEEEEEE--ESSCCCCEEECSSS-SEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCC
T ss_pred CCccEEEEEEE--cCCChhhcCCCCCC-CEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCe
Confidence 33333222221 11122233445555 4444443321 244444
Q ss_pred ----CCCC---CccceEEccCCCCeEEEEEecCCCEEEEEeC-CCeEEEEEcCC------CcE---EEEEeeecCCCCCc
Q 003822 623 ----LRQK---PIQPCYTASSSKGNVMVCFSPDDHYLLVSAV-DNEVRQLLAVD------GRV---HLNFGITATGSSQN 685 (793)
Q Consensus 623 ----lrt~---~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs~-Dg~I~IwDl~t------g~~---~~~l~~~~~~~~~v 685 (793)
.+.. ....++.++....+-.+..+|||+++++++. +.++.++|... ++. ..............
T Consensus 301 ~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGP 380 (638)
T 3sbq_A 301 PVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGP 380 (638)
T ss_dssp CEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCE
T ss_pred eEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcc
Confidence 3330 0011222222233335889999999988874 78999999874 111 00011112345678
Q ss_pred EEEEEeeCCCeEEEEEeCCCcEEEEEEcCCC
Q 003822 686 YTRSYYLNGRDYIVSGSCDEHVVRICCAQTG 716 (793)
Q Consensus 686 ~s~afspdg~~~L~Sgs~Dg~II~IWDv~tg 716 (793)
...+|.++|. ...|---|..| --|++...
T Consensus 381 lHt~Fd~~G~-aYTtlfidSqv-vkWni~~a 409 (638)
T 3sbq_A 381 LHTTFDGRGN-AYTTLFIDSQV-VKWNMEEA 409 (638)
T ss_dssp EEEEECSSSE-EEEEETTTTEE-EEEEHHHH
T ss_pred cEEEECCCCc-eEeeeeecceE-EEEeccHH
Confidence 8899999994 66667789999 99999764
No 470
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=89.87 E-value=23 Score=37.80 Aligned_cols=252 Identities=10% Similarity=-0.002 Sum_probs=0.0
Q ss_pred ceEEEEEeCCCCCEEEEEeCCC----eEEEEECCCCeEEEEEeccC-----------CCCCEEEEEEeeCC-CCEEEEEE
Q 003822 455 RPRQFEYHPSISCLMVFGTLDG----EIVVVNHENENIVSYIPSFG-----------AMNSVLGLCWLKKY-PSKLIAGS 518 (793)
Q Consensus 455 ~V~~vafsP~d~~~Lasgs~DG----~I~VWd~~t~~~i~~l~~~~-----------h~~~V~sv~fs~~~-g~~Lasgs 518 (793)
.|.+|+++|.+...+.+|+..| .|...+-............+ +...|.++++.+.+ .+.+..+.
T Consensus 56 ~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~ 135 (394)
T 3b7f_A 56 TIHHIVQDPREPERMLMAARTGHLGPTVFRSDDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGT 135 (394)
T ss_dssp EEEEEEECSSSTTCEEEEEEC--CCEEEEEESSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEE
T ss_pred ceEEEEECCCCCCeEEEEecCCCCCccEEEeCCCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEEEEe
Q ss_pred cCCcEEEEEcCCCCCcccccccCCceeE-----------ecCCCCeEEEEEcc-CCCEEEEEECCCcEEEEECCCCcEEE
Q 003822 519 DNGSLKLYDIRHMPPSIRGMHYGAGTVT-----------FDEFDQLTSVHVNS-MDELFLASGYSKNIALYDINSGRRLQ 586 (793)
Q Consensus 519 ~DgtV~vWDl~~~~~~~~~~~~~~~~~~-----------~~~~~~V~sv~~s~-~~~~lla~g~Dg~I~IWDl~tg~~l~ 586 (793)
..+ .||....+............... ......+.+|.+.| +.+.++++..++.|...+-....-..
T Consensus 136 ~~g--gl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~DgG~tW~~ 213 (394)
T 3b7f_A 136 SPQ--GLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFESTDAGTDWKP 213 (394)
T ss_dssp ETT--EEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEESSTTSSCEE
T ss_pred cCC--cEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEECCCCCCceE
Q ss_pred EEcccCC-----------CCeEEEEEcCCCCcEEEEEeCCCeEEEEECCCCCccceEEccCC---CCeEEEEEec-CCCE
Q 003822 587 VFADMHK-----------EHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTASSS---KGNVMVCFSP-DDHY 651 (793)
Q Consensus 587 ~~~~gh~-----------~~V~sv~fspdg~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~---~~~vsv~fSp-dg~~ 651 (793)
....... ..+.++.++|..+..+..+...+ |...+-.......+...... .....+.++| +...
T Consensus 214 ~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l~~s~D~G~tW~~~~~~l~~~~~~~~~~i~~~p~~~~~ 292 (394)
T 3b7f_A 214 LNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-IYRMDRREGVWKRIGDAMPREVGDIGFPIVVHQRDPRT 292 (394)
T ss_dssp CCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-EEEEETTTTEEECGGGGSCTTTCSCEEEEEECSSCTTC
T ss_pred CCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-EEEeCCCCCcceECCCCCCCCCccceEEEEECCCCCCE
Q ss_pred EEEEeC-----------CCeEEEEEcCC-CcEEEEEeeecCCCCC-----cEEEEEeeCCCeEEEEEeCCCcEEEE
Q 003822 652 LLVSAV-----------DNEVRQLLAVD-GRVHLNFGITATGSSQ-----NYTRSYYLNGRDYIVSGSCDEHVVRI 710 (793)
Q Consensus 652 Lasgs~-----------Dg~I~IwDl~t-g~~~~~l~~~~~~~~~-----v~s~afspdg~~~L~Sgs~Dg~II~I 710 (793)
|+++.. ++...+|...+ |+.-..+......... ...++++|.+...|+.++.++.+ ..
T Consensus 293 l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~glp~~~~~~~~~~~~~~~~p~~~~~l~~g~~~g~l-~~ 367 (394)
T 3b7f_A 293 VWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRGLPTDQAWLTVKRQAMTADAHAPVGVYFGTTGGEI-WA 367 (394)
T ss_dssp EEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBTSCCSSCCCCCCTBSEEECCSSSCCEEEECTTSCE-EE
T ss_pred EEEEeccCCccceeecCCCceeEEEECCCCCCceECCCCCCCccccceEEEEEEEECCCCCCEEEEEeCCCeE-EE
No 471
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=89.79 E-value=0.12 Score=60.45 Aligned_cols=104 Identities=11% Similarity=0.259 Sum_probs=65.2
Q ss_pred cceeEEeccCCc-hhh-HHHHHhhc-----CCceeeEeeccccccccccc---ccccceeeEEeeccccccc-ccccccc
Q 003822 100 QKLRVVDLHDSS-FGK-DFIRNLSQ-----RGLMCEVLNLRSSRFRKLNM---IGEFKRIHTLNLDYSTSLT-SFKEDCF 168 (793)
Q Consensus 100 ~~~~~~~~~~~~-~~~-~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-~~~~~~~ 168 (793)
.+|+..||.++. +.. ..-..+.. .--+=+.|+|+.+++..+-- .|.+.+|.+|+|.++ .++ .++ -|
T Consensus 273 ~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N-~l~g~ip--~~ 349 (636)
T 4eco_A 273 PEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYN-QLEGKLP--AF 349 (636)
T ss_dssp SSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSC-CCEEECC--CC
T ss_pred CCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCC-cCccchh--hh
Confidence 367777777775 543 22222221 11234677777777776543 667777788888744 455 666 67
Q ss_pred ccccccceeccccccchhhhHHHHHHhcCCc-ccceecceee
Q 003822 169 SCMPNLICLSMCETRVGNLWTTIAALSKLPS-LAELRFQNWL 209 (793)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 209 (793)
..|++|+.|.+-..++. +..+.+.++++ |++|.+..+-
T Consensus 350 ~~l~~L~~L~L~~N~l~---~lp~~l~~l~~~L~~L~Ls~N~ 388 (636)
T 4eco_A 350 GSEIKLASLNLAYNQIT---EIPANFCGFTEQVENLSFAHNK 388 (636)
T ss_dssp EEEEEESEEECCSSEEE---ECCTTSEEECTTCCEEECCSSC
T ss_pred CCCCCCCEEECCCCccc---cccHhhhhhcccCcEEEccCCc
Confidence 77788888777777666 22344777777 8777776543
No 472
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=89.63 E-value=23 Score=37.49 Aligned_cols=151 Identities=9% Similarity=0.053 Sum_probs=81.8
Q ss_pred CEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcccccccCCceeEecCCCCeEEEEEccC---CCEEEEEE-C-----
Q 003822 500 SVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSM---DELFLASG-Y----- 570 (793)
Q Consensus 500 ~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~---~~~lla~g-~----- 570 (793)
..+.|+|. ++++.++++...|.|++++...... ..... ...+..........++++|+ ++.+.++. .
T Consensus 19 ~P~~i~~~-pdG~~l~V~e~~G~i~~~~~~g~~~--~~~~~-~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g 94 (353)
T 2g8s_A 19 HPWALAFL-PDNHGMLITLRGGELRHWQAGKGLS--APLSG-VPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDG 94 (353)
T ss_dssp SEEEEEEC-STTCCEEEEETTTEEEEEETTTEEC--CCCBS-CCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSS
T ss_pred CcEEEEEc-CCCCEEEEEeCCceEEEEeCCCcee--eEecC-CcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCC
Confidence 46789997 6887344556789999998533111 00110 00111122345789999886 66666553 2
Q ss_pred --CCcEEEEECCCC--c--EEEE-Ecc-----cCCCCeEEEEEcCCCCcEEEEEeC-------------CCeEEEEECCC
Q 003822 571 --SKNIALYDINSG--R--RLQV-FAD-----MHKEHINVVKFSNHSPSIFATSSF-------------DQDVKLWDLRQ 625 (793)
Q Consensus 571 --Dg~I~IWDl~tg--~--~l~~-~~~-----gh~~~V~sv~fspdg~~~LaTgs~-------------Dg~IrIWDlrt 625 (793)
...|..|+...+ . .... +.. ........++|.|+| .++++.+. .|.|.-+|...
T Consensus 95 ~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG-~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG 173 (353)
T 2g8s_A 95 KAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKG-YLFIALGENNQRPTAQDLDKLQGKLVRLTDQG 173 (353)
T ss_dssp CEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSS-EEEEEECCTTCGGGGGCTTSCTTEEEEEETTS
T ss_pred CceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCC-cEEEEECCCCCCCccCCCCCCCeEEEEECCCC
Confidence 235666766533 1 1121 111 011123579999999 66665443 24677777654
Q ss_pred CC------------ccceEEccCCCCeEEEEEecCCCEEEEEe
Q 003822 626 KP------------IQPCYTASSSKGNVMVCFSPDDHYLLVSA 656 (793)
Q Consensus 626 ~~------------~~~~~~l~~~~~~vsv~fSpdg~~Lasgs 656 (793)
.. ...++. .++..+..++|+|....|.++.
T Consensus 174 ~~p~~npf~~~~~~~~~i~a-~G~rnp~gl~~d~~~g~l~~~d 215 (353)
T 2g8s_A 174 EIPDDNPFIKESGVRAEIWS-YGIRNPQGMAMNPWSNALWLNE 215 (353)
T ss_dssp CCCTTCTTTTSTTSCTTEEE-ECCSEEEEEEEETTTTEEEEEE
T ss_pred CCCCCCCCcCCCCCCccEEE-EcCcCccceEEECCCCCEEEEe
Confidence 21 122333 3566677899999433444443
No 473
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=89.63 E-value=0.19 Score=58.59 Aligned_cols=72 Identities=19% Similarity=0.192 Sum_probs=49.7
Q ss_pred eeEeecccccccccccccccceeeEEeeccccccccccccccccccccceeccccccchhhhHHHHHHhcCCcccceecc
Q 003822 127 CEVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELRFQ 206 (793)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (793)
=+.|+|+.+++..+. +.+.+|.+|+|+++ .|++|+. .+|+|..|++-..++..+ -..+.+||+|+.|.+.
T Consensus 223 L~~L~Ls~N~L~~lp--~~l~~L~~L~Ls~N-~L~~lp~----~~~~L~~L~Ls~N~L~~l---p~~l~~l~~L~~L~L~ 292 (622)
T 3g06_A 223 LKELIVSGNRLTSLP--VLPSELKELMVSGN-RLTSLPM----LPSGLLSLSVYRNQLTRL---PESLIHLSSETTVNLE 292 (622)
T ss_dssp CCEEECCSSCCSCCC--CCCTTCCEEECCSS-CCSCCCC----CCTTCCEEECCSSCCCSC---CGGGGGSCTTCEEECC
T ss_pred CCEEEccCCccCcCC--CCCCcCcEEECCCC-CCCcCCc----ccccCcEEeCCCCCCCcC---CHHHhhccccCEEEec
Confidence 356677777666654 66677777877754 6777776 567788777777776644 3457778888887776
Q ss_pred ee
Q 003822 207 NW 208 (793)
Q Consensus 207 ~~ 208 (793)
.+
T Consensus 293 ~N 294 (622)
T 3g06_A 293 GN 294 (622)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 474
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=89.04 E-value=0.16 Score=60.83 Aligned_cols=106 Identities=20% Similarity=0.253 Sum_probs=53.2
Q ss_pred cceeEEeccCCchhhHHHHHhhcCCceeeEeecccccccc--cccccc--cceeeEEeeccccccccccccccccccccc
Q 003822 100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRK--LNMIGE--FKRIHTLNLDYSTSLTSFKEDCFSCMPNLI 175 (793)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (793)
.+|+..+|.++.+...+-..+..---+=+.|+|+.+++.. ....+. +.+|.+|+|..+ .++......|..|++|+
T Consensus 343 ~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~p~~l~~l~~L~ 421 (768)
T 3rgz_A 343 RGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNN-GFTGKIPPTLSNCSELV 421 (768)
T ss_dssp TTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSS-EEEEECCGGGGGCTTCC
T ss_pred CCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCC-ccccccCHHHhcCCCCC
Confidence 4677777777765432221111111134566666665542 111222 445666666643 44444445566666666
Q ss_pred eeccccccchhhhHHHHHHhcCCcccceeccee
Q 003822 176 CLSMCETRVGNLWTTIAALSKLPSLAELRFQNW 208 (793)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (793)
.|.+...++... ...++.+|++|++|....|
T Consensus 422 ~L~Ls~N~l~~~--~p~~l~~l~~L~~L~L~~n 452 (768)
T 3rgz_A 422 SLHLSFNYLSGT--IPSSLGSLSKLRDLKLWLN 452 (768)
T ss_dssp EEECCSSEEESC--CCGGGGGCTTCCEEECCSS
T ss_pred EEECcCCcccCc--ccHHHhcCCCCCEEECCCC
Confidence 666655544321 1234556666666666544
No 475
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=89.01 E-value=5.3 Score=40.11 Aligned_cols=107 Identities=10% Similarity=0.107 Sum_probs=62.7
Q ss_pred CCeEEEEEccCCCEEEEEECCCcEEEEECCCCcE------EEEEcc-cCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEC
Q 003822 551 DQLTSVHVNSMDELFLASGYSKNIALYDINSGRR------LQVFAD-MHKEHINVVKFSNHSPSIFATSSFDQDVKLWDL 623 (793)
Q Consensus 551 ~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~------l~~~~~-gh~~~V~sv~fspdg~~~LaTgs~Dg~IrIWDl 623 (793)
..+..++|+|++. +.++ .+|.++-.+..+... -..+-. +-.. -.++.|.|+| .+.++ .||.|.-++.
T Consensus 41 ~~~~~laf~P~G~-LYaV-~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~~fD~~G-~LYav--~dG~iyr~~p 114 (236)
T 1tl2_A 41 SNFKFLFLSPGGE-LYGV-LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFLFFDPNG-YLYAV--SKDKLYKASP 114 (236)
T ss_dssp TTCSEEEECTTSC-EEEE-ETTEEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEEEECTTS-CEEEE--ETTEEEEESC
T ss_pred ccceeEEECCCcc-EEEE-eCCeEEEECCCCCCcccccccccEeccccccc-ceEEEECCCC-CEEEe--CCCEEEEeCC
Confidence 5678999999555 5555 778777766654211 122210 1112 4689999999 66666 5699988875
Q ss_pred CCCCccc-----eEEcc-CCCCeEEEEEecCCCEEEEEeCCCeEEEEE
Q 003822 624 RQKPIQP-----CYTAS-SSKGNVMVCFSPDDHYLLVSAVDNEVRQLL 665 (793)
Q Consensus 624 rt~~~~~-----~~~l~-~~~~~vsv~fSpdg~~Lasgs~Dg~I~IwD 665 (793)
.+..... ..... +-.....+.|.|+|..-++. |+.++-..
T Consensus 115 P~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~ 160 (236)
T 1tl2_A 115 PQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKAL 160 (236)
T ss_dssp CCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEEC
T ss_pred CcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecC
Confidence 4321111 11111 11233459999999976666 77764333
No 476
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=88.69 E-value=0.094 Score=56.31 Aligned_cols=104 Identities=19% Similarity=0.238 Sum_probs=73.6
Q ss_pred ccceeEEeccCCchhhHHHHHhhcCCceeeEeecc-cccccccc--cccccceeeEEeeccccccccccccccccccccc
Q 003822 99 DQKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLR-SSRFRKLN--MIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLI 175 (793)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (793)
..+|+..+|..+.+.. +..-...|..=+.|+|. .+.+..+. +.+...+|.+|+|.+ +.|++++.+-|.-+++|.
T Consensus 153 ~~~l~~L~L~~N~i~~--i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~-N~l~~lp~~~~~~L~~L~ 229 (350)
T 4ay9_X 153 SFESVILWLNKNGIQE--IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISR-TRIHSLPSYGLENLKKLR 229 (350)
T ss_dssp BSSCEEEECCSSCCCE--ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTT-SCCCCCCSSSCTTCCEEE
T ss_pred chhhhhhccccccccC--CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCC-CCcCccChhhhccchHhh
Confidence 3468888888876642 22223356666778886 57888874 457889999999995 589999999999888887
Q ss_pred eeccccccchhhhHHHHHHhcCCcccceecce-eeec
Q 003822 176 CLSMCETRVGNLWTTIAALSKLPSLAELRFQN-WLCC 211 (793)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 211 (793)
.|+. +-.++.-+|.+|++|++|...+ |-||
T Consensus 230 ~l~~------~~l~~lP~l~~l~~L~~l~l~~~~~c~ 260 (350)
T 4ay9_X 230 ARST------YNLKKLPTLEKLVALMEASLTYPSHCC 260 (350)
T ss_dssp CTTC------TTCCCCCCTTTCCSCCEEECSCHHHHH
T ss_pred hccC------CCcCcCCCchhCcChhhCcCCCCcccc
Confidence 7664 2234444678888888888754 3444
No 477
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=88.33 E-value=35 Score=37.85 Aligned_cols=115 Identities=11% Similarity=0.047 Sum_probs=59.5
Q ss_pred eEEEEEeCCCCC-EEEEEeCCCeEEEEECCCCe---EEEEEec---c----CCCCCEEEEEEeeC---CCCEEEEEEcC-
Q 003822 456 PRQFEYHPSISC-LMVFGTLDGEIVVVNHENEN---IVSYIPS---F----GAMNSVLGLCWLKK---YPSKLIAGSDN- 520 (793)
Q Consensus 456 V~~vafsP~d~~-~Lasgs~DG~I~VWd~~t~~---~i~~l~~---~----~h~~~V~sv~fs~~---~g~~Lasgs~D- 520 (793)
++.|+|.| ++. .|+++...|.|++++..... .+..++. . ........|+|+|. ++.+.++-+.+
T Consensus 16 P~~~a~~p-dG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~ 94 (463)
T 2wg3_C 16 PVGALHSG-DGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQ 94 (463)
T ss_dssp EEEEECCS-SSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECC
T ss_pred ceEEEECC-CCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCC
Confidence 89999999 764 45556678999999754321 2222221 0 12457889999742 23333333321
Q ss_pred -----------CcEEEEEcCCCCCcccccccCCceeEe---cCCCCeEEEEEccCCCEEEEEECC
Q 003822 521 -----------GSLKLYDIRHMPPSIRGMHYGAGTVTF---DEFDQLTSVHVNSMDELFLASGYS 571 (793)
Q Consensus 521 -----------gtV~vWDl~~~~~~~~~~~~~~~~~~~---~~~~~V~sv~~s~~~~~lla~g~D 571 (793)
..|.-|.+................+.. ........|.|.|++..+++.|+.
T Consensus 95 ~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~ 159 (463)
T 2wg3_C 95 ERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDG 159 (463)
T ss_dssp CSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCT
T ss_pred CCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCC
Confidence 134446654321100000000000111 112346889999988888877753
No 478
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=88.19 E-value=0.73 Score=52.65 Aligned_cols=21 Identities=14% Similarity=0.175 Sum_probs=11.3
Q ss_pred cceeEEeccCCchhhHHHHHh
Q 003822 100 QKLRVVDLHDSSFGKDFIRNL 120 (793)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~ 120 (793)
.+||..||..+.+..+.++.+
T Consensus 112 ~~L~~L~L~~~~i~~~~~~~l 132 (592)
T 3ogk_B 112 RQLKSVHFRRMIVSDLDLDRL 132 (592)
T ss_dssp TTCCEEEEESCBCCHHHHHHH
T ss_pred CCCCeEEeeccEecHHHHHHH
Confidence 455666666555555444444
No 479
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=87.70 E-value=0.23 Score=58.09 Aligned_cols=82 Identities=7% Similarity=0.204 Sum_probs=44.8
Q ss_pred eeEEeccCCchhhHHHHHhhcCCc-eeeEeecccccccccc--ccc-------ccceeeEEeeccccccccccccccccc
Q 003822 102 LRVVDLHDSSFGKDFIRNLSQRGL-MCEVLNLRSSRFRKLN--MIG-------EFKRIHTLNLDYSTSLTSFKEDCFSCM 171 (793)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (793)
|+..+|.++.+. .+-..+....+ +=+.|+|+.+++...- -.+ ...+|.+|+|.+ ..++.++..-|..|
T Consensus 379 L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~-N~l~~lp~~~~~~l 456 (636)
T 4eco_A 379 VENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSN-NQISKFPKELFSTG 456 (636)
T ss_dssp CCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCS-SCCCSCCTHHHHTT
T ss_pred CcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcC-CccCcCCHHHHccC
Confidence 777777776665 22111111111 2356677666665421 111 234677777764 45666776667777
Q ss_pred cccceeccccccch
Q 003822 172 PNLICLSMCETRVG 185 (793)
Q Consensus 172 ~~~~~~~~~~~~~~ 185 (793)
|+|+.|.+-..++.
T Consensus 457 ~~L~~L~Ls~N~l~ 470 (636)
T 4eco_A 457 SPLSSINLMGNMLT 470 (636)
T ss_dssp CCCSEEECCSSCCS
T ss_pred CCCCEEECCCCCCC
Confidence 77777666665554
No 480
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=87.25 E-value=0.62 Score=53.70 Aligned_cols=68 Identities=22% Similarity=0.200 Sum_probs=33.5
Q ss_pred eEeecccccccccccccccceeeEEeeccccccccccccccccccccceeccccccchhhhHHHHHHhcCCcccceecce
Q 003822 128 EVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELRFQN 207 (793)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (793)
+.|+|+.++|..+.-.+. +|.+|+|++ +.|+.|+. .||+|..|++...++..+=. .+++|++|.+..
T Consensus 103 ~~L~Ls~N~l~~ip~l~~--~L~~L~Ls~-N~l~~lp~----~l~~L~~L~Ls~N~l~~lp~------~l~~L~~L~Ls~ 169 (571)
T 3cvr_A 103 EYLDACDNRLSTLPELPA--SLKHLDVDN-NQLTMLPE----LPALLEYINADNNQLTMLPE------LPTSLEVLSVRN 169 (571)
T ss_dssp CEEECCSSCCSCCCCCCT--TCCEEECCS-SCCSCCCC----CCTTCCEEECCSSCCSCCCC------CCTTCCEEECCS
T ss_pred CEEEccCCCCCCcchhhc--CCCEEECCC-CcCCCCCC----cCccccEEeCCCCccCcCCC------cCCCcCEEECCC
Confidence 445555554444332111 555555553 34555554 35666666666555543211 355666666655
Q ss_pred e
Q 003822 208 W 208 (793)
Q Consensus 208 ~ 208 (793)
|
T Consensus 170 N 170 (571)
T 3cvr_A 170 N 170 (571)
T ss_dssp S
T ss_pred C
Confidence 4
No 481
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=87.22 E-value=0.34 Score=54.15 Aligned_cols=95 Identities=20% Similarity=0.293 Sum_probs=62.9
Q ss_pred cceeEEeccCCchhhHHHHHhhcCCceeeEeecccccccccccccccceeeEEeeccccccccccccccccccccceecc
Q 003822 100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSM 179 (793)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (793)
.+|+..+|.++.+.. +...--.-+.|+|+.+++..+.-.+...+|.+|+|.++ .++.++. .+++|+.|.+
T Consensus 111 ~~L~~L~l~~n~l~~-----l~~~~~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N-~l~~lp~----~~~~L~~L~L 180 (454)
T 1jl5_A 111 QSLKSLLVDNNNLKA-----LSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNN-SLKKLPD----LPPSLEFIAA 180 (454)
T ss_dssp TTCCEEECCSSCCSC-----CCSCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSS-CCSCCCC----CCTTCCEEEC
T ss_pred CCCcEEECCCCccCc-----ccCCCCCCCEEECcCCCCCCCcccCCCCCCCEEECCCC-cCcccCC----CcccccEEEC
Confidence 677888887765542 11100145677887777777655667777888888754 5776654 2467888877
Q ss_pred ccccchhhhHHHHHHhcCCcccceeccee
Q 003822 180 CETRVGNLWTTIAALSKLPSLAELRFQNW 208 (793)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (793)
-..++..+- ++.+|++|++|.+..|
T Consensus 181 ~~n~l~~l~----~~~~l~~L~~L~l~~N 205 (454)
T 1jl5_A 181 GNNQLEELP----ELQNLPFLTAIYADNN 205 (454)
T ss_dssp CSSCCSSCC----CCTTCTTCCEEECCSS
T ss_pred cCCcCCcCc----cccCCCCCCEEECCCC
Confidence 777766642 4778888888877765
No 482
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=87.10 E-value=6.2 Score=42.28 Aligned_cols=108 Identities=13% Similarity=0.081 Sum_probs=64.8
Q ss_pred CCCeEEEEEcCCCCcEEEEEeCCCeEEEEECCCCCccceEEc-----cCCCCeEEEEEecC---CCEEEEE-e--CCCeE
Q 003822 593 KEHINVVKFSNHSPSIFATSSFDQDVKLWDLRQKPIQPCYTA-----SSSKGNVMVCFSPD---DHYLLVS-A--VDNEV 661 (793)
Q Consensus 593 ~~~V~sv~fspdg~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l-----~~~~~~vsv~fSpd---g~~Lasg-s--~Dg~I 661 (793)
-...+.++|.|+| .++++--..|.|++++...+....+..+ .+..+...++++|+ ..+|++. + .++.|
T Consensus 31 L~~P~~ia~~pdG-~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v 109 (347)
T 3das_A 31 LNSPWGLAPLPGG-DLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRI 109 (347)
T ss_dssp CSSEEEEEECTTS-CEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEE
T ss_pred CCCceEEEEcCCC-cEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEE
Confidence 4567899999999 6777665589999998765543333322 23445667999996 4555543 2 35566
Q ss_pred EEEEcCCC-----c---EEEEEe-eecCCCCCcEEEEEeeCCCeEEEEEe
Q 003822 662 RQLLAVDG-----R---VHLNFG-ITATGSSQNYTRSYYLNGRDYIVSGS 702 (793)
Q Consensus 662 ~IwDl~tg-----~---~~~~l~-~~~~~~~~v~s~afspdg~~~L~Sgs 702 (793)
.-|....+ + ....+. ......+....++|.|||. +.++.+
T Consensus 110 ~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~-Lyvt~G 158 (347)
T 3das_A 110 VRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKM-LYAGTG 158 (347)
T ss_dssp EEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSC-EEEECB
T ss_pred EEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCC-EEEEEC
Confidence 66766542 1 111121 1112233455799999998 444433
No 483
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=87.02 E-value=0.27 Score=52.35 Aligned_cols=75 Identities=12% Similarity=0.152 Sum_probs=54.5
Q ss_pred ecccc-cccccccccccceeeEEeeccccccccccccccccccccceeccccccchhhhHHHHHHhcCCcccceecce
Q 003822 131 NLRSS-RFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELRFQN 207 (793)
Q Consensus 131 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (793)
+++.. ++..+--.+...+|.+|+|.....|+.+..+-|..|++|..|.+-..++..+= -.++.+|++|++|.+..
T Consensus 14 ~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~--~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 14 RCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVA--PDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp ECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEEC--TTGGGSCSCCCEEECCS
T ss_pred EcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeC--HHHhcCCcCCCEEeCCC
Confidence 34443 45544336777788999998668889999888999999999888777665432 23678889999888764
No 484
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=86.87 E-value=0.73 Score=52.66 Aligned_cols=61 Identities=10% Similarity=0.115 Sum_probs=31.9
Q ss_pred cceeEEeecC-------Ccc-ccchHHHHHHHHHhccceeEEeccCCchhhHHHHHhhcCCceeeEeecc
Q 003822 72 EIEAVDVRSG-------TSC-MLTGEFALSLMHAIDQKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLR 133 (793)
Q Consensus 72 ~~~~~~~~~~-------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (793)
.++.+|+.++ ..| .+.++-...+.+. -.+|+.++|..+.+..+.+..+.+.--+=+.|+|+
T Consensus 343 ~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~-~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~ 411 (592)
T 3ogk_B 343 QLKRLRIERGADEQGMEDEEGLVSQRGLIALAQG-CQELEYMAVYVSDITNESLESIGTYLKNLCDFRLV 411 (592)
T ss_dssp TCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHH-CTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEE
T ss_pred CCCEEEeecCccccccccccCccCHHHHHHHHhh-CccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEe
Confidence 4666676641 112 3344333333332 35778888876677777666665422233455553
No 485
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=86.74 E-value=12 Score=37.62 Aligned_cols=182 Identities=8% Similarity=-0.068 Sum_probs=89.3
Q ss_pred CCEEEEEeCCCeEEEEECCCCe------EEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcCCcEEEEEcCCCCCcccccc
Q 003822 466 SCLMVFGTLDGEIVVVNHENEN------IVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIRHMPPSIRGMH 539 (793)
Q Consensus 466 ~~~Lasgs~DG~I~VWd~~t~~------~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~DgtV~vWDl~~~~~~~~~~~ 539 (793)
..+|.....| ++++=....+. ....+- .+-=..+..++|+ |++.+.++ .+|.+.-.+..+... ....
T Consensus 4 ~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG-~~gw~~~~~laf~-P~G~LYaV--~~G~Ly~~~~~t~~~--~~W~ 76 (236)
T 1tl2_A 4 ESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIG-KGGWSNFKFLFLS-PGGELYGV--LNDKIYKGTPPTHDN--DNWM 76 (236)
T ss_dssp CCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEE-SSSCTTCSEEEEC-TTSCEEEE--ETTEEEEESCCCSTT--CCHH
T ss_pred ceEEEEEeCC-cEEecCCCCCcccchhhhccccC-ccccccceeEEEC-CCccEEEE--eCCeEEEECCCCCCc--cccc
Confidence 4566666666 65554444333 112221 1112367799998 58876666 667655444433211 1111
Q ss_pred cCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECCCCcEE------EEEcccCCCCeEEEEEcCCCCcEEEEEe
Q 003822 540 YGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDINSGRRL------QVFADMHKEHINVVKFSNHSPSIFATSS 613 (793)
Q Consensus 540 ~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l------~~~~~gh~~~V~sv~fspdg~~~LaTgs 613 (793)
.....+--.......++.|.+++...++ .||.|+-++..+.... ..+-.+-=..+..|.|.|+| .+.+..
T Consensus 77 ~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G-~Lyav~- 152 (236)
T 1tl2_A 77 GRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNG-YLYAVH- 152 (236)
T ss_dssp HHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTS-CEEEEE-
T ss_pred ccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCc-eEEEEe-
Confidence 0111110001112367778766666555 6699988876432110 11110111467899999999 666555
Q ss_pred CCCeEEEEECCCCCc-----cceEEccCCCCeEE-EEEecCCCEEEEEeCCCeE
Q 003822 614 FDQDVKLWDLRQKPI-----QPCYTASSSKGNVM-VCFSPDDHYLLVSAVDNEV 661 (793)
Q Consensus 614 ~Dg~IrIWDlrt~~~-----~~~~~l~~~~~~vs-v~fSpdg~~Lasgs~Dg~I 661 (793)
|+.+.-+...+... .............. +.|.|+|...++. ++.+
T Consensus 153 -dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~--~g~~ 203 (236)
T 1tl2_A 153 -GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ--GGKF 203 (236)
T ss_dssp -TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE--TTEE
T ss_pred -CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCCcEEEEe--CCeE
Confidence 77754332222110 11111112222333 6688888876666 6644
No 486
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=86.13 E-value=0.58 Score=48.45 Aligned_cols=65 Identities=22% Similarity=0.348 Sum_probs=35.4
Q ss_pred ccceeeEEeeccccccccccc--cccccccccceeccccccchhhhHHHHHHhcCCcccceecceeeecC
Q 003822 145 EFKRIHTLNLDYSTSLTSFKE--DCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELRFQNWLCCD 212 (793)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (793)
.|++|++|+|.+ ..|+++.. +-|..+|+|..|+.-..++..+ .....|..| +|++|++.....|.
T Consensus 168 ~l~~L~~L~Ls~-N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l-~L~~L~L~~Npl~~ 234 (267)
T 3rw6_A 168 NIPELLSLNLSN-NRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGL-KLEELWLDGNSLCD 234 (267)
T ss_dssp HCTTCCEEECTT-SCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTS-CCSEEECTTSTTGG
T ss_pred hCCCCCEEECCC-CCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccC-CcceEEccCCcCcc
Confidence 455666666663 34555543 4555666666666666666554 222333333 66666666555553
No 487
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=86.09 E-value=0.29 Score=52.08 Aligned_cols=76 Identities=20% Similarity=0.289 Sum_probs=46.8
Q ss_pred eeEeeccc-cccccccc--ccccceeeEEeeccccccccccccccccccccceeccccccchhhhHHHHHHhcCCcccce
Q 003822 127 CEVLNLRS-SRFRKLNM--IGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAEL 203 (793)
Q Consensus 127 ~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (793)
=+.|+|++ +++..+.. .+.+.+|.+|+|.++ .|+.+..+-|.-|++|..|.+-..++..+=. .++..|+ |++|
T Consensus 33 L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~--~~~~~~~-L~~l 108 (347)
T 2ifg_A 33 LTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSFNALESLSW--KTVQGLS-LQEL 108 (347)
T ss_dssp CSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCSSCCSCCCS--TTTCSCC-CCEE
T ss_pred eeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCCCccceeCH--HHcccCC-ceEE
Confidence 35666664 66666642 566677777777754 6777777777777777777777666554321 1222333 6666
Q ss_pred ecc
Q 003822 204 RFQ 206 (793)
Q Consensus 204 ~~~ 206 (793)
.+.
T Consensus 109 ~l~ 111 (347)
T 2ifg_A 109 VLS 111 (347)
T ss_dssp ECC
T ss_pred Eee
Confidence 654
No 488
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=85.98 E-value=0.36 Score=56.37 Aligned_cols=94 Identities=18% Similarity=0.183 Sum_probs=55.7
Q ss_pred hccceeEEeccCCchhhHHHHHhhcCCceeeEeecccccccccccccccceeeEEeecccccccccccccccccccccee
Q 003822 98 IDQKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICL 177 (793)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (793)
.+.+++.++|.++.+. ..-..+. -.-+.|+|+.+.+..+.- .+.+|++|+|.++ .|++|+. .+|+|+.|
T Consensus 38 ~~~~l~~L~ls~n~L~-~lp~~l~---~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N-~l~~lp~----~l~~L~~L 106 (622)
T 3g06_A 38 LNNGNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTSLPA--LPPELRTLEVSGN-QLTSLPV----LPPGLLEL 106 (622)
T ss_dssp HHHCCCEEECCSSCCS-CCCSCCC---TTCSEEEECSCCCSCCCC--CCTTCCEEEECSC-CCSCCCC----CCTTCCEE
T ss_pred cCCCCcEEEecCCCcC-ccChhhC---CCCcEEEecCCCCCCCCC--cCCCCCEEEcCCC-cCCcCCC----CCCCCCEE
Confidence 3445777777776543 1111111 234667777777775544 5677777777754 4777766 56777777
Q ss_pred ccccccchhhhHHHHHHhcCCcccceeccee
Q 003822 178 SMCETRVGNLWTTIAALSKLPSLAELRFQNW 208 (793)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (793)
++-..++..+-. .+++|..|.+..+
T Consensus 107 ~Ls~N~l~~l~~------~l~~L~~L~L~~N 131 (622)
T 3g06_A 107 SIFSNPLTHLPA------LPSGLCKLWIFGN 131 (622)
T ss_dssp EECSCCCCCCCC------CCTTCCEEECCSS
T ss_pred ECcCCcCCCCCC------CCCCcCEEECCCC
Confidence 776666665543 4556666665543
No 489
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=85.49 E-value=0.25 Score=51.29 Aligned_cols=79 Identities=22% Similarity=0.251 Sum_probs=59.6
Q ss_pred eeeEeecccccccccc----cccccceeeEEeecccccccccc-ccccccccccceeccccccchhhh-----HHHHHHh
Q 003822 126 MCEVLNLRSSRFRKLN----MIGEFKRIHTLNLDYSTSLTSFK-EDCFSCMPNLICLSMCETRVGNLW-----TTIAALS 195 (793)
Q Consensus 126 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~ 195 (793)
..+.|+|+.|++..+. +.+.|++|.+|+|. ...|+++. -+-+..+ +|..|.+-+..+..-. -....+.
T Consensus 171 ~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls-~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~il~ 248 (267)
T 3rw6_A 171 ELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLS-GNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISAIRE 248 (267)
T ss_dssp TCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECT-TSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHHHHH
T ss_pred CCCEEECCCCCCCCCccchhHHhhCCCCCEEECC-CCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHHHHH
Confidence 5789999999999875 34689999999998 56788873 3444444 9999999887776421 1236788
Q ss_pred cCCcccceecc
Q 003822 196 KLPSLAELRFQ 206 (793)
Q Consensus 196 ~~~~~~~~~~~ 206 (793)
.+|+|+.|-.+
T Consensus 249 ~~P~L~~LDg~ 259 (267)
T 3rw6_A 249 RFPKLLRLDGH 259 (267)
T ss_dssp HCTTCCEESSC
T ss_pred HCcccCeECCc
Confidence 99999988654
No 490
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=84.53 E-value=90 Score=38.86 Aligned_cols=152 Identities=10% Similarity=0.100 Sum_probs=88.5
Q ss_pred CeEEEEEccCCCEEEEEECCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCCC-----CcEEEEEeC-CCeEEEEECCC
Q 003822 552 QLTSVHVNSMDELFLASGYSKNIALYDINSGRRLQVFADMHKEHINVVKFSNHS-----PSIFATSSF-DQDVKLWDLRQ 625 (793)
Q Consensus 552 ~V~sv~~s~~~~~lla~g~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspdg-----~~~LaTgs~-Dg~IrIWDlrt 625 (793)
.|...+. .+..++.+. ++.+.++.+..++.....+..-...|.|+++.|.+ ..+++.|.. |++|+|+++.+
T Consensus 515 ~I~~As~--n~~~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~ 591 (1158)
T 3ei3_A 515 NISVASC--NSSQVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPS 591 (1158)
T ss_dssp CCCEEEE--CSSEEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTT
T ss_pred EEEEEEe--CCCEEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCC
Confidence 4666665 345666664 67888888876643221111245689999998643 268999996 99999999987
Q ss_pred CCccceEEccCCCCeEEEEEe--cCCCEEEEEeCCCeEEEE--EcCCCcEEEEEeeecCCCCCcEEEEEeeCCCeEEEEE
Q 003822 626 KPIQPCYTASSSKGNVMVCFS--PDDHYLLVSAVDNEVRQL--LAVDGRVHLNFGITATGSSQNYTRSYYLNGRDYIVSG 701 (793)
Q Consensus 626 ~~~~~~~~l~~~~~~vsv~fS--pdg~~Lasgs~Dg~I~Iw--Dl~tg~~~~~l~~~~~~~~~v~s~afspdg~~~L~Sg 701 (793)
.+......+.....+.++.+. ....+|.+|-.||.+.-+ |..+|.+...-.. .-+...+.-..+...|...+++.
T Consensus 592 l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~-~LG~~pv~L~~~~~~~~~~V~a~ 670 (1158)
T 3ei3_A 592 FELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKV-TLGTQPTVLRTFRSLSTTNVFAC 670 (1158)
T ss_dssp CCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEEEEEEE-ECCSSCCEEEEEESSSCEEEEEE
T ss_pred CCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCccccceeE-EcCCCceEEEEEeeCCceeEEEE
Confidence 544444444332233333322 345688999999987544 4456665433221 12344444444554555445555
Q ss_pred eCCCcE
Q 003822 702 SCDEHV 707 (793)
Q Consensus 702 s~Dg~I 707 (793)
|..-.+
T Consensus 671 s~rp~l 676 (1158)
T 3ei3_A 671 SDRPTV 676 (1158)
T ss_dssp SSSCEE
T ss_pred CCCCEE
Confidence 444333
No 491
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=84.26 E-value=1.2 Score=48.20 Aligned_cols=153 Identities=14% Similarity=0.108 Sum_probs=0.0
Q ss_pred EEeeccccCCCchhHHH-HHhhcCCCcceeEEeecCCcc-ccchHHHHHHHHHhcc--ceeEEeccCCchhhHHHHHhhc
Q 003822 47 EIILEYLKDIDFQPLLE-VCMQIGATEIEAVDVRSGTSC-MLTGEFALSLMHAIDQ--KLRVVDLHDSSFGKDFIRNLSQ 122 (793)
Q Consensus 47 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 122 (793)
.+.+|.-.+.++..+++ .+..++++.|.++.+-.-.-. .--++..-.|.+++-. +||...|.+..++..-+--+.+
T Consensus 82 rl~~~~~~~~~~~~~~~~fl~~~~~~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~ 161 (362)
T 2ra8_A 82 KYALSYDEAEEGVNLMDKILKDKKLPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQ 161 (362)
T ss_dssp EECCCHHHHHTTCCHHHHHHHCTTGGGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBC
T ss_pred EEEeecCCcccHHHHHHHHhcCCCchhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccc
Q ss_pred CCceeeEeecccccccccccccccceeeEEeeccccccccccccccccccccceeccccccchhhhHHHHHHhcCCcccc
Q 003822 123 RGLMCEVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAE 202 (793)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (793)
.+|. .+...+++|..|+|..+..+ .++. +. +|+|++|..+...+..==-..-+.++||+|++
T Consensus 162 ~~L~--------------~ll~~~P~L~~L~L~g~~~l-~l~~--~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~ 223 (362)
T 2ra8_A 162 VDLS--------------PVLDAMPLLNNLKIKGTNNL-SIGK--KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEK 223 (362)
T ss_dssp CBCH--------------HHHHTCTTCCEEEEECCBTC-BCCS--CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCE
T ss_pred cCHH--------------HHHhcCCCCcEEEEeCCCCc-eecc--cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcE
Q ss_pred eecceeeecCCCCCC
Q 003822 203 LRFQNWLCCDDTGNS 217 (793)
Q Consensus 203 ~~~~~~~~~~~~~~~ 217 (793)
|.++.+-...+....
T Consensus 224 L~L~~~~~~~~~~~~ 238 (362)
T 2ra8_A 224 LVLYVGVEDYGFDGD 238 (362)
T ss_dssp EEEECBCGGGTCCSC
T ss_pred EEEeccccccccchh
No 492
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=82.59 E-value=0.39 Score=50.88 Aligned_cols=105 Identities=13% Similarity=0.098 Sum_probs=67.5
Q ss_pred HHHHHHHHhccceeEEeccCCc---hhhHHHHHhhcCCc-eeeEeecccccccccccccccce---ee-EEeeccccccc
Q 003822 90 FALSLMHAIDQKLRVVDLHDSS---FGKDFIRNLSQRGL-MCEVLNLRSSRFRKLNMIGEFKR---IH-TLNLDYSTSLT 161 (793)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~ 161 (793)
.....++....+|+.++|.++. .|...+ .|+ +=+.|+|..+ +..+. .+-|.. |+ +|+|.. +|+
T Consensus 216 ~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF-----~~~~~L~~l~l~~n-i~~I~-~~aF~~~~~L~~~l~l~~--~l~ 286 (329)
T 3sb4_A 216 ADFKLIRDYMPNLVSLDISKTNATTIPDFTF-----AQKKYLLKIKLPHN-LKTIG-QRVFSNCGRLAGTLELPA--SVT 286 (329)
T ss_dssp HHHHHHHHHCTTCCEEECTTBCCCEECTTTT-----TTCTTCCEEECCTT-CCEEC-TTTTTTCTTCCEEEEECT--TCC
T ss_pred HHHHHHHHhcCCCeEEECCCCCcceecHhhh-----hCCCCCCEEECCcc-cceeh-HHHhhCChhccEEEEEcc--cce
Confidence 3445566666789999998852 333332 232 4467777665 33332 233544 55 666653 888
Q ss_pred cccccccccccccceeccccccchhhhHHHHHHhcCCcccceec
Q 003822 162 SFKEDCFSCMPNLICLSMCETRVGNLWTTIAALSKLPSLAELRF 205 (793)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (793)
.++.++|..+++|+.|.+-...|..+- ..|...+++|++|.|
T Consensus 287 ~I~~~aF~~c~~L~~l~l~~n~i~~I~--~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 287 AIEFGAFMGCDNLRYVLATGDKITTLG--DELFGNGVPSKLIYK 328 (329)
T ss_dssp EECTTTTTTCTTEEEEEECSSCCCEEC--TTTTCTTCCCCEEEC
T ss_pred EEchhhhhCCccCCEEEeCCCccCccc--hhhhcCCcchhhhcc
Confidence 999999999999998887666665553 346778888887765
No 493
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=82.45 E-value=49 Score=34.27 Aligned_cols=195 Identities=10% Similarity=0.104 Sum_probs=102.7
Q ss_pred CCCEEEEEe--CCCeEEEEECCCCeEEEEEeccCCCCCEEEEEEeeCCCCEEEEEEcC--------------CcEEEEEc
Q 003822 465 ISCLMVFGT--LDGEIVVVNHENENIVSYIPSFGAMNSVLGLCWLKKYPSKLIAGSDN--------------GSLKLYDI 528 (793)
Q Consensus 465 d~~~Lasgs--~DG~I~VWd~~t~~~i~~l~~~~h~~~V~sv~fs~~~g~~Lasgs~D--------------gtV~vWDl 528 (793)
++..+.... .++.|...+.+..... .+. . ..+ .+..+++++|+-+... ..|+..++
T Consensus 24 ~g~~iy~~n~~d~~~ly~~~~dg~~~~-~l~--~--~~~---~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~ 95 (302)
T 3s25_A 24 SDGEVFFSNTNDNGRLYAMNIDGSNIH-KLS--N--DTA---MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKR 95 (302)
T ss_dssp ETTEEEEEEGGGTTEEEEEETTSCSCE-EEE--E--EEE---EEEEECSSEEEEEEECC------CCSSCCSEEEEEEET
T ss_pred eCCEEEEEeCCCCceEEEEcCCCCCCE-Ecc--C--Cce---eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeC
Confidence 445555553 2566766676544332 232 1 112 2223677777766543 35666666
Q ss_pred CCCCCcccccccCCceeEecCCCCeEEEEEccCCCEEEEEE----CCCcEEEEECCCCcEEEEEcccCCCCeEEEEEcCC
Q 003822 529 RHMPPSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASG----YSKNIALYDINSGRRLQVFADMHKEHINVVKFSNH 604 (793)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g----~Dg~I~IWDl~tg~~l~~~~~gh~~~V~sv~fspd 604 (793)
...+.... . .. .+..+++.++.++-+. ....|+..++.... ...+.. +.. ..|+|+
T Consensus 96 dg~~~~~l--~----------~~--~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~~lt~-~~~----~~~~~~ 155 (302)
T 3s25_A 96 NGHGSTVL--D----------PD--PCIYASLIGNYIYYLHYDTQTATSLYRIRIDGEE-KKKIKN-HYL----FTCNTS 155 (302)
T ss_dssp TSCCCEEE--E----------CS--CEEEEEEETTEEEEEEESSSSCEEEEEEETTSCC-CEEEES-SCC----CCSEEE
T ss_pred CCCcceEe--e----------cC--CccEEEEeCCEEEEEeecCCCCceEEEEECCCCC-eEEEeC-CCc----eEeeEE
Confidence 66543111 0 01 1224556788887776 24566666776433 344442 322 346777
Q ss_pred CCcEEEEEeCCCeEEEEECCCCCccceEEccCCCCeEEEEEecCCCEEEEEeCC--CeEEEEEcCCCcEEEEEeeecCCC
Q 003822 605 SPSIFATSSFDQDVKLWDLRQKPIQPCYTASSSKGNVMVCFSPDDHYLLVSAVD--NEVRQLLAVDGRVHLNFGITATGS 682 (793)
Q Consensus 605 g~~~LaTgs~Dg~IrIWDlrt~~~~~~~~l~~~~~~vsv~fSpdg~~Lasgs~D--g~I~IwDl~tg~~~~~l~~~~~~~ 682 (793)
+..++.+......|.+-++..+....+ ..+ .....++|++.+|+-.... ..|..-++..+.. ..+. .
T Consensus 156 g~~iy~t~~g~~~Iy~~~l~g~~~~~l--~~~---~~~~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~-~~Lt-----~ 224 (302)
T 3s25_A 156 DRYFYYNNPKNGQLYRYDTASQSEALF--YDC---NCYKPVVLDDTNVYYMDVNRDNAIVHVNINNPNP-VVLT-----E 224 (302)
T ss_dssp TTEEEEECTTTCCEEEEETTTTEEEEE--ECS---CEEEEEEEETTEEEEEEGGGTTEEEEECSSSCCC-EECS-----C
T ss_pred CCEEEEEeCCCceEEEEECCCCCEEEE--eCC---CccceeeecCCEEEEEEcCCCcEEEEEECCCCCe-EEEe-----C
Confidence 855555544467788888877543322 222 2223466999998877644 3566666654442 2231 1
Q ss_pred CCcEEEEEeeCCCeEEEEE
Q 003822 683 SQNYTRSYYLNGRDYIVSG 701 (793)
Q Consensus 683 ~~v~s~afspdg~~~L~Sg 701 (793)
... ..++|++. .|.-+
T Consensus 225 ~~~--~~~~~~g~-~Iy~~ 240 (302)
T 3s25_A 225 ANI--EHYNVYGS-LIFYQ 240 (302)
T ss_dssp SCE--EEEEEETT-EEEEE
T ss_pred CCc--ceEEECCC-EEEEE
Confidence 112 34788888 44443
No 494
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=82.43 E-value=53 Score=34.60 Aligned_cols=196 Identities=13% Similarity=0.119 Sum_probs=114.0
Q ss_pred CCCEEEEEeCCCeEEEEE---CC------CCeEEEE-EeccCCCCCEEEEEEeeC--CCCEEEEEEcCCcEEEEEcCCCC
Q 003822 465 ISCLMVFGTLDGEIVVVN---HE------NENIVSY-IPSFGAMNSVLGLCWLKK--YPSKLIAGSDNGSLKLYDIRHMP 532 (793)
Q Consensus 465 d~~~Lasgs~DG~I~VWd---~~------t~~~i~~-l~~~~h~~~V~sv~fs~~--~g~~Lasgs~DgtV~vWDl~~~~ 532 (793)
....|+.-+..|.++-.. +. .|..+.. +.+ .....|.++.-.+. +..+++.++.+|.|+--.+....
T Consensus 52 t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~~i~~~l~l-~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~ 130 (327)
T 3uc1_A 52 THDLILFFTTQGRVYRAKAYDLPEASRTARGQHVANLLAF-QPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFD 130 (327)
T ss_dssp TTSEEEEEETTSEEEEEEGGGSCBCCSSSCCEEHHHHTTC-CTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGC
T ss_pred CCCEEEEEeCCCeEEEEEHHHCcCCCccCCCEEHHHccCC-CCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhh
Confidence 445677777778766544 32 2222211 222 23456777654422 46799999999999999887643
Q ss_pred CcccccccCCceeEecCCCCeEEEEEccCCCEEEEEECCCcEEEEECC--C----C-----cEEEEEcccCCCCeEEEEE
Q 003822 533 PSIRGMHYGAGTVTFDEFDQLTSVHVNSMDELFLASGYSKNIALYDIN--S----G-----RRLQVFADMHKEHINVVKF 601 (793)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~~V~sv~~s~~~~~lla~g~Dg~I~IWDl~--t----g-----~~l~~~~~gh~~~V~sv~f 601 (793)
...+ . ....+.+...+.+..+........++..+..|.+..+... . + .....+. ....|.++..
T Consensus 131 ~~~r--~-G~~~i~lke~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~--~~d~Vv~~~~ 205 (327)
T 3uc1_A 131 SNRS--G-GIVAVNLRDNDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFN--IDDRLLSLNV 205 (327)
T ss_dssp CCCS--S-CEESCBCCTTCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCEESSCCC--TTCCEEEEEE
T ss_pred cccc--C-ceEEEEECCCCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCCCeeeecCC--CCCEEEEEEE
Confidence 2111 0 1112233344666666666677889999999998888776 2 1 1111222 3456777766
Q ss_pred cCCCCcEEEEEeCCCeEEEEECCCCCc-----cceE--EccC-CCCeEEEEEecCCCEEEEEeCCCeEEEEEcC
Q 003822 602 SNHSPSIFATSSFDQDVKLWDLRQKPI-----QPCY--TASS-SKGNVMVCFSPDDHYLLVSAVDNEVRQLLAV 667 (793)
Q Consensus 602 spdg~~~LaTgs~Dg~IrIWDlrt~~~-----~~~~--~l~~-~~~~vsv~fSpdg~~Lasgs~Dg~I~IwDl~ 667 (793)
.+.+ ..++..+..|.++.-.+..... .-+. .+.. ....+.+....+...++..+.+|.+.-++..
T Consensus 206 ~~~~-~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~ 278 (327)
T 3uc1_A 206 VREG-TYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAAR 278 (327)
T ss_dssp CCTT-CEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEEGGGCEEEEEGG
T ss_pred ECCC-CEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEEEEEEeCCCccEEEEcCCCeEEEEehh
Confidence 6555 5888899999999887643211 1122 2222 2334444444445566677777777777654
No 495
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=82.36 E-value=0.78 Score=52.86 Aligned_cols=74 Identities=19% Similarity=0.227 Sum_probs=37.3
Q ss_pred cceeEEeccCCchhhHHHHHhhcCCceeeEeecccccccccccccccceeeEEeeccccccccccccccccccccceecc
Q 003822 100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSM 179 (793)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (793)
.+|+.++|..+.+.. +-.+.. +=+.|+|+.+++..+.- .+.+|.+|+|.+ +.|+.++. .+++|..|++
T Consensus 100 ~~L~~L~Ls~N~l~~--ip~l~~---~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~-N~l~~lp~----~l~~L~~L~L 167 (571)
T 3cvr_A 100 ASLEYLDACDNRLST--LPELPA---SLKHLDVDNNQLTMLPE--LPALLEYINADN-NQLTMLPE----LPTSLEVLSV 167 (571)
T ss_dssp TTCCEEECCSSCCSC--CCCCCT---TCCEEECCSSCCSCCCC--CCTTCCEEECCS-SCCSCCCC----CCTTCCEEEC
T ss_pred CCCCEEEccCCCCCC--cchhhc---CCCEEECCCCcCCCCCC--cCccccEEeCCC-CccCcCCC----cCCCcCEEEC
Confidence 455555555555443 222111 44556666555555433 455566666653 34555554 3556666555
Q ss_pred ccccch
Q 003822 180 CETRVG 185 (793)
Q Consensus 180 ~~~~~~ 185 (793)
-..++.
T Consensus 168 s~N~L~ 173 (571)
T 3cvr_A 168 RNNQLT 173 (571)
T ss_dssp CSSCCS
T ss_pred CCCCCC
Confidence 554443
No 496
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=82.35 E-value=0.49 Score=52.79 Aligned_cols=95 Identities=14% Similarity=0.175 Sum_probs=60.9
Q ss_pred cceeEEeccCCchhhHHHHHhhcCCceeeEeecccccccccccccccceeeEEeeccccccccccccccccccccceecc
Q 003822 100 QKLRVVDLHDSSFGKDFIRNLSQRGLMCEVLNLRSSRFRKLNMIGEFKRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSM 179 (793)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (793)
.+|+..+|.++.+.. +-+ +..=-+=+.|+|+.+++..+. ..+.+|.+|+|.++ .++.++. |..||+|+.|.+
T Consensus 131 ~~L~~L~L~~n~l~~--lp~-~~~l~~L~~L~l~~N~l~~lp--~~~~~L~~L~L~~n-~l~~l~~--~~~l~~L~~L~l 202 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEK--LPE-LQNSSFLKIIDVDNNSLKKLP--DLPPSLEFIAAGNN-QLEELPE--LQNLPFLTAIYA 202 (454)
T ss_dssp TTCCEEECCSSCCSS--CCC-CTTCTTCCEEECCSSCCSCCC--CCCTTCCEEECCSS-CCSSCCC--CTTCTTCCEEEC
T ss_pred CCCCEEECcCCCCCC--Ccc-cCCCCCCCEEECCCCcCcccC--CCcccccEEECcCC-cCCcCcc--ccCCCCCCEEEC
Confidence 588999998887653 212 111123467888888877643 34568888888865 6777763 888888888877
Q ss_pred ccccchhhhHHHHHHhcCCcccceeccee
Q 003822 180 CETRVGNLWTTIAALSKLPSLAELRFQNW 208 (793)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (793)
-..++..+=. -.++|++|.+..|
T Consensus 203 ~~N~l~~l~~------~~~~L~~L~l~~n 225 (454)
T 1jl5_A 203 DNNSLKKLPD------LPLSLESIVAGNN 225 (454)
T ss_dssp CSSCCSSCCC------CCTTCCEEECCSS
T ss_pred CCCcCCcCCC------CcCcccEEECcCC
Confidence 7666543210 1246777776654
No 497
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=82.25 E-value=88 Score=37.06 Aligned_cols=159 Identities=10% Similarity=-0.017 Sum_probs=80.2
Q ss_pred ceEEEEEeCCCCCEEEEEeCCCeEEEEECCCCeEEEEEecc-C----CCCCEEEEEEeeCCCCEEEEEEcCCc----EEE
Q 003822 455 RPRQFEYHPSISCLMVFGTLDGEIVVVNHENENIVSYIPSF-G----AMNSVLGLCWLKKYPSKLIAGSDNGS----LKL 525 (793)
Q Consensus 455 ~V~~vafsP~d~~~Lasgs~DG~I~VWd~~t~~~i~~l~~~-~----h~~~V~sv~fs~~~g~~Lasgs~Dgt----V~v 525 (793)
+|.+|+++|.+...+.+++..|.|...+ +.|+--..+... . ....|.+|++.|.+.+.++.+..+.. -.|
T Consensus 16 ~i~~i~~~p~~~~~~~a~~~~ggv~rS~-DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~~v 94 (789)
T 1sqj_A 16 YITGIVAHPKTKDLLYARTDIGGAYRWD-AGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWAAF 94 (789)
T ss_dssp CEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCCEE
T ss_pred cEEEEEECCCCCCEEEEEecCCCEEEec-CCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCcccEE
Confidence 4999999997778888888877776655 334332223210 1 12469999987545556666543322 445
Q ss_pred EEcCCCCCcccccccCCceeE-ecCCCCeEEEEEccCCC-EEEEEECCCcEEEEECCCCcEEEEEcc-----cCCCCeEE
Q 003822 526 YDIRHMPPSIRGMHYGAGTVT-FDEFDQLTSVHVNSMDE-LFLASGYSKNIALYDINSGRRLQVFAD-----MHKEHINV 598 (793)
Q Consensus 526 WDl~~~~~~~~~~~~~~~~~~-~~~~~~V~sv~~s~~~~-~lla~g~Dg~I~IWDl~tg~~l~~~~~-----gh~~~V~s 598 (793)
|....+-............-. ......+..++++|.+. .++++...+.|. .....|+.=..+.. .....+..
T Consensus 95 ~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl~-~S~DgG~TW~~~~~~~~~~~~~~~~~~ 173 (789)
T 1sqj_A 95 YVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIW-KSSDRAKTWTNVTSIPDAFTNGIGYTS 173 (789)
T ss_dssp EEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCEE-EESSTTSSCEEETTSCCCCSTTTCEEE
T ss_pred EEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCEE-EECCCCcccCCCccCccccCCCCCeEE
Confidence 555544333322211000000 00011345677777654 444443343332 12222332222221 01245788
Q ss_pred EEEcCCCCcEEEEEeCC
Q 003822 599 VKFSNHSPSIFATSSFD 615 (793)
Q Consensus 599 v~fspdg~~~LaTgs~D 615 (793)
+.++|..+..++.+..+
T Consensus 174 i~~~p~~~~~~~~~~~~ 190 (789)
T 1sqj_A 174 VIFDPERNGTIYASATA 190 (789)
T ss_dssp EEECTTSTTCEEEEESS
T ss_pred EEECCCCCCEEEEEEcC
Confidence 99998655556666554
No 498
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=81.86 E-value=0.96 Score=43.72 Aligned_cols=60 Identities=17% Similarity=0.265 Sum_probs=48.7
Q ss_pred ceeeEEeeccccccccccccccccccccceeccccc-cchhhhHHHHHHhcC----Ccccceecceee
Q 003822 147 KRIHTLNLDYSTSLTSFKEDCFSCMPNLICLSMCET-RVGNLWTTIAALSKL----PSLAELRFQNWL 209 (793)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 209 (793)
++|..|+|..|. ||--.-.-++.||+|+.|+.... +|.+ ...++|+++ ++|++|-...|.
T Consensus 61 ~~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD--~gL~~L~~~~~~~~~L~~L~Ls~C~ 125 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIED--GCLERLSQLENLQKSMLEMEIISCG 125 (176)
T ss_dssp CCEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCH--HHHHHHHTCHHHHHHCCEEEEESCT
T ss_pred ceEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCH--HHHHHHHhcccccCCCCEEEcCCCC
Confidence 379999999887 99888888899999999998876 4666 456777776 489999987763
No 499
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=81.30 E-value=1.1 Score=43.21 Aligned_cols=132 Identities=13% Similarity=0.122 Sum_probs=79.4
Q ss_pred eEEEeec-cccCCCchhHHHHHhhcCCCcceeEEeecCCccccchHHHHHHHHH--hccceeEEeccCCchhhHHHHHhh
Q 003822 45 TLEIILE-YLKDIDFQPLLEVCMQIGATEIEAVDVRSGTSCMLTGEFALSLMHA--IDQKLRVVDLHDSSFGKDFIRNLS 121 (793)
Q Consensus 45 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 121 (793)
.+.+--. ++.+..+..|.+.+.. ...+..+|+ +.+.+..+-+..+.++ -|..|+..||.++.+|.+-...|.
T Consensus 40 ~L~L~~n~~i~~~g~~~l~~~L~~--~~~L~~L~L---s~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~ 114 (185)
T 1io0_A 40 EVNLNNIMNIPVPTLKACAEALKT--NTYVKKFSI---VGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV 114 (185)
T ss_dssp EEECTTCTTCCHHHHHHHHHHHTT--CCSCCEEEC---TTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred EEEecCCCCCCHHHHHHHHHHHHh--CCCcCEEEC---cCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHH
Confidence 4444333 4555555666666554 356778887 4466777776666555 478999999999999998887775
Q ss_pred cCCceeeEeecccccccccccccccceeeEEeecc-ccccccccc----cccccccccceeccccccchhhhHHHHHHhc
Q 003822 122 QRGLMCEVLNLRSSRFRKLNMIGEFKRIHTLNLDY-STSLTSFKE----DCFSCMPNLICLSMCETRVGNLWTTIAALSK 196 (793)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (793)
+. ...-..|.+|+|+. ...|+.-.. ..+...++|+.|.+-...+..-=-...||.+
T Consensus 115 ~~-------------------L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~~~i~~~L~~ 175 (185)
T 1io0_A 115 EA-------------------LQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPRLRASNAMMN 175 (185)
T ss_dssp HG-------------------GGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHHHHHHHHHHH
T ss_pred HH-------------------HHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCChHHHHHHHHHh
Confidence 43 11123566777731 445554221 2344457888888777766543223445554
Q ss_pred CCcc
Q 003822 197 LPSL 200 (793)
Q Consensus 197 ~~~~ 200 (793)
--.|
T Consensus 176 N~~l 179 (185)
T 1io0_A 176 NNDL 179 (185)
T ss_dssp HHHH
T ss_pred hHHH
Confidence 3333
No 500
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=80.62 E-value=6.4 Score=44.77 Aligned_cols=76 Identities=8% Similarity=0.034 Sum_probs=52.5
Q ss_pred CCeEEEEEcCCCCcEEEEEeCCCeEEEEECCCC------C-----ccceEEccCCCCeEEEEEecCCCEEEEEeCCCeEE
Q 003822 594 EHINVVKFSNHSPSIFATSSFDQDVKLWDLRQK------P-----IQPCYTASSSKGNVMVCFSPDDHYLLVSAVDNEVR 662 (793)
Q Consensus 594 ~~V~sv~fspdg~~~LaTgs~Dg~IrIWDlrt~------~-----~~~~~~l~~~~~~vsv~fSpdg~~Lasgs~Dg~I~ 662 (793)
.....+..+|+|..++++|-.+.++.++|.+.- + ...........++...+|.++|.-..+---|..|.
T Consensus 323 ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~aYTtlfidSqvv 402 (638)
T 3sbq_A 323 KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGNAYTTLFIDSQVV 402 (638)
T ss_dssp SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEE
T ss_pred CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCceEeeeeecceEE
Confidence 445578999999544555556899999999841 1 11123344556788899999994444445799999
Q ss_pred EEEcCCC
Q 003822 663 QLLAVDG 669 (793)
Q Consensus 663 IwDl~tg 669 (793)
-|++...
T Consensus 403 kWni~~a 409 (638)
T 3sbq_A 403 KWNMEEA 409 (638)
T ss_dssp EEEHHHH
T ss_pred EEeccHH
Confidence 9998653
Done!