BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003824
(793 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ZXE|A Chain A, Crystal Structure Of The Sodium - Potassium Pump In The
E2.2k+.Pi State
pdb|3A3Y|A Chain A, Crystal Structure Of The Sodium-potassium Pump With Bound
Potassium And Ouabain
Length = 1028
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 118/524 (22%), Positives = 194/524 (37%), Gaps = 118/524 (22%)
Query: 19 EELGQVDTILSDKTGTLTCNSMEFIKCSIAGTSYGRGVTEVERAMARRKGSPLEEEVTEE 78
E LG TI SDKTGTLT N M ++A + + E + TE
Sbjct: 370 ETLGSTSTICSDKTGTLTQNRM-----TVAHMWFDNQIHEAD--------------TTEN 410
Query: 79 QEDKASIKGFNFEDERIMNGSWVNEPHADVIQKFLRLLAICHTALPEVDEENGKISYEAE 138
Q A K + +W R+ A+C+ A+ + ++N I +
Sbjct: 411 QSGAAFDK---------TSATW---------SALSRIAALCNRAVFQAGQDNVPILKRSV 452
Query: 139 SPDEAAFVIAARELGFEFYERTQTSISVHELDPVTGTKVERSYSLLNVLEFSSSRKRMSV 198
+ D A+ + E S V G + +R+ ++ + S+++ ++S+
Sbjct: 453 AGD------ASESALLKCIELCCGS--------VQGMR-DRNPKIVEIPFNSTNKYQLSI 497
Query: 199 --IVRSEEGTLLLLSKGADSVMFERLAE---NGRE--FEEQTKEHIN----EYADAGLRT 247
+S E LL+ KGA + +R + NG E +E KE E G R
Sbjct: 498 HENEKSSESRYLLVMKGAPERILDRCSTILLNGAEEPLKEDMKEAFQNAYLELGGLGERV 557
Query: 248 LILAYRELDEKEYKQFNEEFTEAKNSVSADRXXXXXXXXXXXXXXXXXXGATAVEDKLQN 307
L + L E +Y + + N + D G A+ D +
Sbjct: 558 LGFCHFALPEDKYNEGYPFDADEPNFPTTD---------------LCFVGLMAMIDPPRA 602
Query: 308 GVPECIDKLAQAGIKLWVLTGDKMETAINIGFACSLLRQGMRQVIISSETPESKTXXXXX 367
VP+ + K AGIK+ ++TGD TA I ++ +G +ET E
Sbjct: 603 AVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGVGIISEG-------NETIEDIAARLNI 655
Query: 368 XXXXXXXXXXXXVLHQLIRGKELLDSSNESLGPLALIIDGKSLTYALEDDVKDLFLELAI 427
+ + G +L D S E L DD+ E
Sbjct: 656 PIGQVNPRDAKACV---VHGSDLKDLSTEVL-----------------DDILHYHTE--- 692
Query: 428 GCASVICCRSSPKQKALVTRLVKTKTSSTTLAIGDGANDVGMLQEADIGV--GISGVEGM 485
++ R+SP+QK ++ + + + GDG ND L++ADIGV GISG +
Sbjct: 693 ----IVFARTSPQQKLIIVEGCQ-RQGAIVAVTGDGVNDSPALKKADIGVAMGISGSDVS 747
Query: 486 QAVMSSDIAIAQFRFLERLLLV-HGHWCYRRISSMICYFFYKNI 528
+ ++D+ + F + V G + + I Y NI
Sbjct: 748 K--QAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNI 789
>pdb|3B8E|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3B8E|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
pdb|3KDP|A Chain A, Crystal Structure Of The Sodium-potassium Pump
pdb|3KDP|C Chain C, Crystal Structure Of The Sodium-potassium Pump
Length = 998
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 113/523 (21%), Positives = 195/523 (37%), Gaps = 116/523 (22%)
Query: 19 EELGQVDTILSDKTGTLTCNSMEFIKCSIAGTSYGRGVTEVERAMARRKGSPLEEEVTEE 78
E LG TI SDKTGTLT N M A E + TE
Sbjct: 340 ETLGSTSTICSDKTGTLTQNRMTV-------------------AHMWSDNQIHEADTTEN 380
Query: 79 QEDKASIKGFNFEDERIMNGSWVNEPHADVIQKFLRLLAICHTALPEVDEENGKISYEAE 138
Q G +F+ + +W+ R+ +C+ A+ + ++EN I A
Sbjct: 381 Q------SGVSFDK---TSATWL---------ALSRIAGLCNRAVFQANQENLPILKRAV 422
Query: 139 SPDEAAFVIAARELGFEFYERTQTSISVHELDPVTGTKVERSYSLLNVLEFSSSRKRMSV 198
+ D + + + EL + ++ Y+ + + F+S+ K
Sbjct: 423 AGDASESAL----------------LKCIELCCGSVKEMRERYTKIVEIPFNSTNKYQLS 466
Query: 199 IVRSE---EGTLLLLSKGADSVMFERLAE---NGRE--FEEQTKEHI-NEYAD-AGLRTL 248
I ++ E LL+ KGA + +R + +G+E +E+ K+ N Y + GL
Sbjct: 467 IHKNPNTAEPRHLLVMKGAPERILDRCSSILIHGKEQPLDEELKDAFQNAYLELGGLGER 526
Query: 249 ILAYRELDEKEYKQFNEEFTEAKNSVSADRXXXXXXXXXXXXXXXXXXGATAVEDKLQNG 308
+L + L + +QF E F + V+ G ++ D +
Sbjct: 527 VLGFCHLFLPD-EQFPEGFQFDTDDVN------------FPLDNLCFVGLISMIDPPRAA 573
Query: 309 VPECIDKLAQAGIKLWVLTGDKMETAINIGFACSLLRQGMRQVIISSETPESKTXXXXXX 368
VP+ + K AGIK+ ++TGD TA I ++ +G +ET E
Sbjct: 574 VPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGVGIISEG-------NETVEDIAARLNIP 626
Query: 369 XXXXXXXXXXXVLHQLIRGKELLDSSNESLGPLALIIDGKSLTYALEDDVKDLFLELAIG 428
+ + G +L D ++E L DD+ E
Sbjct: 627 VSQVNPRDAKACV---VHGSDLKDMTSEQL-----------------DDILKYHTE---- 662
Query: 429 CASVICCRSSPKQKALVTRLVKTKTSSTTLAIGDGANDVGMLQEADIGV--GISGVEGMQ 486
++ R+SP+QK ++ + + + GDG ND ++ADIGV GI+G + +
Sbjct: 663 ---IVFARTSPQQKLIIVEGCQ-RQGAIVAVTGDGVNDSPASKKADIGVAMGIAGSDVSK 718
Query: 487 AVMSSDIAIAQFRFLERLLLV-HGHWCYRRISSMICYFFYKNI 528
++D+ + F + V G + + I Y NI
Sbjct: 719 --QAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNI 759
>pdb|3N23|A Chain A, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N23|C Chain C, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N2F|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3N2F|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
Length = 992
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 112/523 (21%), Positives = 194/523 (37%), Gaps = 116/523 (22%)
Query: 19 EELGQVDTILSDKTGTLTCNSMEFIKCSIAGTSYGRGVTEVERAMARRKGSPLEEEVTEE 78
E LG TI S KTGTLT N M A E + TE
Sbjct: 334 ETLGSTSTICSXKTGTLTQNRMTV-------------------AHMWSDNQIHEADTTEN 374
Query: 79 QEDKASIKGFNFEDERIMNGSWVNEPHADVIQKFLRLLAICHTALPEVDEENGKISYEAE 138
Q G +F+ + +W+ R+ +C+ A+ + ++EN I A
Sbjct: 375 Q------SGVSFDK---TSATWL---------ALSRIAGLCNRAVFQANQENLPILKRAV 416
Query: 139 SPDEAAFVIAARELGFEFYERTQTSISVHELDPVTGTKVERSYSLLNVLEFSSSRKRMSV 198
+ D + + + EL + ++ Y+ + + F+S+ K
Sbjct: 417 AGDASESAL----------------LKCIELCCGSVKEMRERYTKIVEIPFNSTNKYQLS 460
Query: 199 IVRSE---EGTLLLLSKGADSVMFERLAE---NGRE--FEEQTKEHI-NEYAD-AGLRTL 248
I ++ E LL+ KGA + +R + +G+E +E+ K+ N Y + GL
Sbjct: 461 IHKNPNTAEPRHLLVMKGAPERILDRCSSILIHGKEQPLDEELKDAFQNAYLELGGLGER 520
Query: 249 ILAYRELDEKEYKQFNEEFTEAKNSVSADRXXXXXXXXXXXXXXXXXXGATAVEDKLQNG 308
+L + L + +QF E F + V+ G ++ D +
Sbjct: 521 VLGFCHLFLPD-EQFPEGFQFDTDDVN------------FPLDNLCFVGLISMIDPPRAA 567
Query: 309 VPECIDKLAQAGIKLWVLTGDKMETAINIGFACSLLRQGMRQVIISSETPESKTXXXXXX 368
VP+ + K AGIK+ ++TGD TA I ++ +G +ET E
Sbjct: 568 VPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGVGIISEG-------NETVEDIAARLNIP 620
Query: 369 XXXXXXXXXXXVLHQLIRGKELLDSSNESLGPLALIIDGKSLTYALEDDVKDLFLELAIG 428
+ + G +L D ++E L DD+ E
Sbjct: 621 VSQVNPRDAKACV---VHGSDLKDMTSEQL-----------------DDILKYHTE---- 656
Query: 429 CASVICCRSSPKQKALVTRLVKTKTSSTTLAIGDGANDVGMLQEADIGV--GISGVEGMQ 486
++ R+SP+QK ++ + + + GDG ND ++ADIGV GI+G + +
Sbjct: 657 ---IVFARTSPQQKLIIVEGCQ-RQGAIVAVTGDGVNDSPASKKADIGVAMGIAGSDVSK 712
Query: 487 AVMSSDIAIAQFRFLERLLLV-HGHWCYRRISSMICYFFYKNI 528
++D+ + F + V G + + I Y NI
Sbjct: 713 --QAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNI 753
>pdb|3IXZ|A Chain A, Pig Gastric H+K+-Atpase Complexed With Aluminium Fluoride
pdb|2XZB|A Chain A, Pig Gastric H,K-Atpase With Bound Bef And Sch28080
pdb|2YN9|A Chain A, Cryo-em Structure Of Gastric H+,k+-atpase With Bound
Rubidium
Length = 1034
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 77/332 (23%), Positives = 123/332 (37%), Gaps = 62/332 (18%)
Query: 208 LLLSKGADSVMFERLAE---NGREF--EEQTKEHIN----EYADAGLRTLILAYRELDEK 258
+L+ KGA + ER + G+E +EQ +E G R L L EK
Sbjct: 514 VLVMKGAPERVLERCSSILIKGQELPLDEQWREAFQTAYLSLGGLGERVLGFCQLYLSEK 573
Query: 259 EYKQFNEEFTEAKNSVSADRXXXXXXXXXXXXXXXXXXGATAVEDKLQNGVPECIDKLAQ 318
+Y EA N ++ G ++ D + VP+ + K
Sbjct: 574 DYPPGYAFDVEAMNFPTSG---------------LSFAGLVSMIDPPRATVPDAVLKCRT 618
Query: 319 AGIKLWVLTGDKMETAINIGFACSLLRQGMRQVIISSETPESKTXXXXXXXXXXXXXXXX 378
AGI++ ++TGD TA I + ++ +G SET E
Sbjct: 619 AGIRVIMVTGDHPITAKAIAASVGIISEG-------SETVEDIAARLRVPVDQVNRKDAR 671
Query: 379 XVLHQLIRGKELLDSSNESLGPLALIIDGKSLTYALEDDVKDLFLELAIGCASVICCRSS 438
+ I G +L D +D L AL + +F R+S
Sbjct: 672 ACV---INGMQLKD------------MDPSELVEALRTHPEMVF------------ARTS 704
Query: 439 PKQKALVTRLVKTKTSSTTLAIGDGANDVGMLQEADIGVGISGVEGMQAVM-SSDIAIAQ 497
P+QK ++ + + + GDG ND L++ADIGV + G+ G A ++D+ +
Sbjct: 705 PQQKLVIVESCQ-RLGAIVAVTGDGVNDSPALKKADIGVAM-GIAGSDAAKNAADMILLD 762
Query: 498 FRFLERLLLV-HGHWCYRRISSMICYFFYKNI 528
F + V G + + I Y KNI
Sbjct: 763 DNFASIVTGVEQGRLIFDNLKKSIAYTLTKNI 794
Score = 29.3 bits (64), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 14/22 (63%), Positives = 14/22 (63%)
Query: 19 EELGQVDTILSDKTGTLTCNSM 40
E LG I SDKTGTLT N M
Sbjct: 375 ETLGSTSVICSDKTGTLTQNRM 396
>pdb|2DQS|A Chain A, Crystal Structure Of The Calcium Pump With Amppcp In The
Absence Of Calcium
pdb|2EAR|A Chain A, P21 Crystal Of The Sr Ca2+-Atpase With Bound Tg
pdb|2EAT|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa And
Tg
pdb|2ZBF|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 And Tg In
The Absence Of Calcium
pdb|2ZBG|A Chain A, Calcium Pump Crystal Structure With Bound Alf4 And Tg In
The Absence Of Calcium
pdb|3AR2|A Chain A, Calcium Pump Crystal Structure With Bound Amppcp And Ca2+
pdb|3AR3|A Chain A, Calcium Pump Crystal Structure With Bound Adp And Tg
pdb|3AR4|A Chain A, Calcium Pump Crystal Structure With Bound Atp And Tg In
The Absence Of Ca2+
pdb|3AR5|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Amp And Tg
pdb|3AR6|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Adp And Tg
In The Absence Of Calcium
pdb|3AR7|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Atp And Tg
In The Absence Of Ca2+
pdb|3AR8|A Chain A, Calcium Pump Crystal Structure With Bound Alf4, Tnp-Amp
And Tg
pdb|3AR9|A Chain A, Calcium Pump Crystal Structure With Bound Bef3, Tnp-Amp
And Tg In The Absence Of Calcium
pdb|2ZBE|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBE|B Chain B, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBD|A Chain A, Crystal Structure Of The Sr Calcium Pump With Bound
Aluminium Fluoride, Adp And Calcium
Length = 995
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 128/593 (21%), Positives = 199/593 (33%), Gaps = 131/593 (22%)
Query: 8 KPARARTSNLNEELGQVDTILSDKTGTLTCNSMEFIKCSIAGTSYGRGVTEVERAMARRK 67
K A R+ E LG I SDKTGTLT N M K I G + E ++
Sbjct: 330 KNAIVRSLPSVETLGCTSVICSDKTGTLTTNQMSVCKMFIIDKVDGDFCSLNEFSITGST 389
Query: 68 GSPLEEEVTEEQEDKASIKGFNFEDERIMNGSWVNEPHADVIQKFLRLLAICHTALPEVD 127
+P E E + N + D + + + A+C+ + + +
Sbjct: 390 YAP--------------------EGEVLKNDKPIRSGQFDGLVELATICALCNDSSLDFN 429
Query: 128 EENGKISYEAESPDEAAFVIAARELGFEFYERTQTSIS-VHELDPVTGTKVERSYSLLNV 186
E G E+ + A + + F R + + + + V +++ ++
Sbjct: 430 ETKGVYEKVGEATETALTTLVEKMNVFNTEVRNLSKVERANACNSVIRQLMKKEFT---- 485
Query: 187 LEFSSSRKRMSVIV------RSEEGTLLLLSKGA-----DSVMFERLAENGREFEEQTKE 235
LEFS RK MSV R+ G + + KGA D + R+ KE
Sbjct: 486 LEFSRDRKSMSVYCSPAKSSRAAVGNKMFV-KGAPEGVIDRCNYVRVGTTRVPMTGPVKE 544
Query: 236 H----INEYADA--GLRTLILAYRELDEKEYKQF---NEEFTEAKNSVSADRXXXXXXXX 286
I E+ LR L LA R+ K + + F E + ++
Sbjct: 545 KILSVIKEWGTGRDTLRCLALATRDTPPKREEMVLDDSSRFMEYETDLT----------- 593
Query: 287 XXXXXXXXXXGATAVEDKLQNGVPECIDKLAQAGIKLWVLTGDKMETAINIGFACSLLRQ 346
G + D + V I AGI++ ++TGD TAI I
Sbjct: 594 --------FVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAI--------- 636
Query: 347 GMRQVIISSETPESKTXXXXXXXXXXXXXXXXXVLHQLIRGKELLDSSNESLGPLALIID 406
R++ I E E V + G+E D PLA
Sbjct: 637 -CRRIGIFGENEE--------------------VADRAYTGREFDDL------PLA---- 665
Query: 407 GKSLTYALEDDVKDLFLELAIGCASVIC-CRSSPKQKALVTRLVKTKTSSTTLAIGDGAN 465
E C C R P K+ + +++ T + GDG N
Sbjct: 666 -----------------EQREACRRACCFARVEPSHKSKIVEYLQSYDEITAMT-GDGVN 707
Query: 466 DVGMLQEADIGVGISGVEGMQAVMSSDIAIAQFRFLERLLLV-HGHWCYRRISSMICYFF 524
D L++A+IG+ + G A +S++ +A F + V G Y + I Y
Sbjct: 708 DAPALKKAEIGIAM-GSGTAVAKTASEMVLADDNFSTIVAAVEEGRAIYNNMKQFIRYLI 766
Query: 525 YKNIAFGFTLFFFEAYASFSGQ-PVYNDWFLSLYNVFFTSLPVIALGVFDQDV 576
N+ +F A PV W N+ LP ALG D+
Sbjct: 767 SSNVGEVVCIFLTAALGLPEALIPVQLLWV----NLVTDGLPATALGFNPPDL 815
>pdb|1KJU|A Chain A, Ca2+-Atpase In The E2 State
pdb|1IWO|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1IWO|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1SU4|A Chain A, Crystal Structure Of Calcium Atpase With Two Bound Calcium
Ions
pdb|1T5S|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-amppcp Form
pdb|1T5T|A Chain A, Structure Of The (Sr)ca2+-Atpase Ca2-E1-Adp:alf4- Form
pdb|1VFP|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1VFP|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1WPG|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|C Chain C, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|D Chain D, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1XP5|A Chain A, Structure Of The (Sr)ca2+-Atpase E2-Alf4- Form
pdb|2AGV|A Chain A, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2AGV|B Chain B, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2BY4|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Boc-12adt.
pdb|2C88|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg):amppcp
Form
pdb|2C8K|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) With
Partially Occupied Amppcp Site
pdb|2C8L|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) Form
pdb|2C9M|A Chain A, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2C9M|B Chain B, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2O9J|A Chain A, Crystal Structure Of Calcium Atpase With Bound Magnesium
Fluoride And Cyclopiazonic Acid
pdb|2OA0|A Chain A, Crystal Structure Of Calcium Atpase With Bound Adp And
Cyclopiazonic Acid
pdb|3B9B|A Chain A, Structure Of The E2 Beryllium Fluoride Complex Of The
Serca Ca2+-Atpase
pdb|3B9R|A Chain A, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|3B9R|B Chain B, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|2EAS|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa
pdb|2EAU|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa In
The Presence Of Curcumin
pdb|3FGO|A Chain A, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FGO|B Chain B, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FPB|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic Acid With Atp
pdb|3FPS|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic And Adp
pdb|3NAL|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dtb
pdb|3NAM|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dotg
pdb|3NAN|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With A
Thapsigargin Derivative Boc-(Phi)tg
pdb|3N5K|A Chain A, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N5K|B Chain B, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N8G|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-caamppcp Form
pdb|2YFY|A Chain A, Serca In The Hne2 State Complexed With Debutanoyl
Thapsigargin
Length = 994
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 128/593 (21%), Positives = 199/593 (33%), Gaps = 131/593 (22%)
Query: 8 KPARARTSNLNEELGQVDTILSDKTGTLTCNSMEFIKCSIAGTSYGRGVTEVERAMARRK 67
K A R+ E LG I SDKTGTLT N M K I G + E ++
Sbjct: 329 KNAIVRSLPSVETLGCTSVICSDKTGTLTTNQMSVCKMFIIDKVDGDFCSLNEFSITGST 388
Query: 68 GSPLEEEVTEEQEDKASIKGFNFEDERIMNGSWVNEPHADVIQKFLRLLAICHTALPEVD 127
+P E E + N + D + + + A+C+ + + +
Sbjct: 389 YAP--------------------EGEVLKNDKPIRSGQFDGLVELATICALCNDSSLDFN 428
Query: 128 EENGKISYEAESPDEAAFVIAARELGFEFYERTQTSIS-VHELDPVTGTKVERSYSLLNV 186
E G E+ + A + + F R + + + + V +++ ++
Sbjct: 429 ETKGVYEKVGEATETALTTLVEKMNVFNTEVRNLSKVERANACNSVIRQLMKKEFT---- 484
Query: 187 LEFSSSRKRMSVIV------RSEEGTLLLLSKGA-----DSVMFERLAENGREFEEQTKE 235
LEFS RK MSV R+ G + + KGA D + R+ KE
Sbjct: 485 LEFSRDRKSMSVYCSPAKSSRAAVGNKMFV-KGAPEGVIDRCNYVRVGTTRVPMTGPVKE 543
Query: 236 H----INEYADA--GLRTLILAYRELDEKEYKQF---NEEFTEAKNSVSADRXXXXXXXX 286
I E+ LR L LA R+ K + + F E + ++
Sbjct: 544 KILSVIKEWGTGRDTLRCLALATRDTPPKREEMVLDDSSRFMEYETDLT----------- 592
Query: 287 XXXXXXXXXXGATAVEDKLQNGVPECIDKLAQAGIKLWVLTGDKMETAINIGFACSLLRQ 346
G + D + V I AGI++ ++TGD TAI I
Sbjct: 593 --------FVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAI--------- 635
Query: 347 GMRQVIISSETPESKTXXXXXXXXXXXXXXXXXVLHQLIRGKELLDSSNESLGPLALIID 406
R++ I E E V + G+E D PLA
Sbjct: 636 -CRRIGIFGENEE--------------------VADRAYTGREFDDL------PLA---- 664
Query: 407 GKSLTYALEDDVKDLFLELAIGCASVIC-CRSSPKQKALVTRLVKTKTSSTTLAIGDGAN 465
E C C R P K+ + +++ T + GDG N
Sbjct: 665 -----------------EQREACRRACCFARVEPSHKSKIVEYLQSYDEITAMT-GDGVN 706
Query: 466 DVGMLQEADIGVGISGVEGMQAVMSSDIAIAQFRFLERLLLV-HGHWCYRRISSMICYFF 524
D L++A+IG+ + G A +S++ +A F + V G Y + I Y
Sbjct: 707 DAPALKKAEIGIAM-GSGTAVAKTASEMVLADDNFSTIVAAVEEGRAIYNNMKQFIRYLI 765
Query: 525 YKNIAFGFTLFFFEAYASFSGQ-PVYNDWFLSLYNVFFTSLPVIALGVFDQDV 576
N+ +F A PV W N+ LP ALG D+
Sbjct: 766 SSNVGEVVCIFLTAALGLPEALIPVQLLWV----NLVTDGLPATALGFNPPDL 814
>pdb|3BA6|A Chain A, Structure Of The Ca2e1p Phosphoenzyme Intermediate Of The
Serca Ca2+-Atpase
Length = 994
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 127/593 (21%), Positives = 198/593 (33%), Gaps = 131/593 (22%)
Query: 8 KPARARTSNLNEELGQVDTILSDKTGTLTCNSMEFIKCSIAGTSYGRGVTEVERAMARRK 67
K A R+ E LG I S KTGTLT N M K I G + E ++
Sbjct: 329 KNAIVRSLPSVETLGCTSVICSXKTGTLTTNQMSVCKMFIIDKVDGDFCSLNEFSITGST 388
Query: 68 GSPLEEEVTEEQEDKASIKGFNFEDERIMNGSWVNEPHADVIQKFLRLLAICHTALPEVD 127
+P E E + N + D + + + A+C+ + + +
Sbjct: 389 YAP--------------------EGEVLKNDKPIRSGQFDGLVELATICALCNDSSLDFN 428
Query: 128 EENGKISYEAESPDEAAFVIAARELGFEFYERTQTSIS-VHELDPVTGTKVERSYSLLNV 186
E G E+ + A + + F R + + + + V +++ ++
Sbjct: 429 ETKGVYEKVGEATETALTTLVEKMNVFNTEVRNLSKVERANACNSVIRQLMKKEFT---- 484
Query: 187 LEFSSSRKRMSVIV------RSEEGTLLLLSKGA-----DSVMFERLAENGREFEEQTKE 235
LEFS RK MSV R+ G + + KGA D + R+ KE
Sbjct: 485 LEFSRDRKSMSVYCSPAKSSRAAVGNKMFV-KGAPEGVIDRCNYVRVGTTRVPMTGPVKE 543
Query: 236 H----INEYADA--GLRTLILAYRELDEKEYKQF---NEEFTEAKNSVSADRXXXXXXXX 286
I E+ LR L LA R+ K + + F E + ++
Sbjct: 544 KILSVIKEWGTGRDTLRCLALATRDTPPKREEMVLDDSSRFMEYETDLT----------- 592
Query: 287 XXXXXXXXXXGATAVEDKLQNGVPECIDKLAQAGIKLWVLTGDKMETAINIGFACSLLRQ 346
G + D + V I AGI++ ++TGD TAI I
Sbjct: 593 --------FVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAI--------- 635
Query: 347 GMRQVIISSETPESKTXXXXXXXXXXXXXXXXXVLHQLIRGKELLDSSNESLGPLALIID 406
R++ I E E V + G+E D PLA
Sbjct: 636 -CRRIGIFGENEE--------------------VADRAYTGREFDDL------PLA---- 664
Query: 407 GKSLTYALEDDVKDLFLELAIGCASVIC-CRSSPKQKALVTRLVKTKTSSTTLAIGDGAN 465
E C C R P K+ + +++ T + GDG N
Sbjct: 665 -----------------EQREACRRACCFARVEPSHKSKIVEYLQSYDEITAMT-GDGVN 706
Query: 466 DVGMLQEADIGVGISGVEGMQAVMSSDIAIAQFRFLERLLLV-HGHWCYRRISSMICYFF 524
D L++A+IG+ + G A +S++ +A F + V G Y + I Y
Sbjct: 707 DAPALKKAEIGIAM-GSGTAVAKTASEMVLADDNFSTIVAAVEEGRAIYNNMKQFIRYLI 765
Query: 525 YKNIAFGFTLFFFEAYASFSGQ-PVYNDWFLSLYNVFFTSLPVIALGVFDQDV 576
N+ +F A PV W N+ LP ALG D+
Sbjct: 766 SSNVGEVVCIFLTAALGLPEALIPVQLLWV----NLVTDGLPATALGFNPPDL 814
>pdb|3TLM|A Chain A, Crystal Structure Of Endoplasmic Reticulum Ca2+-Atpase
(Serca) From Bovine Muscle
Length = 992
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 59/147 (40%), Gaps = 10/147 (6%)
Query: 434 CC--RSSPKQKALVTRLVKTKTSSTTLAIGDGANDVGMLQEADIGVGISGVEGMQAVMSS 491
CC R P K+ + +++ T + GDG ND L++A+IG+ + G A +S
Sbjct: 673 CCFARVEPTHKSKIVEYLQSFDEITAMT-GDGVNDAPALKKAEIGIAM-GSGTAVAKTAS 730
Query: 492 DIAIAQFRFLERLLLV-HGHWCYRRISSMICYFFYKNIAFGFTLFFFEAYASFSGQ-PVY 549
++ +A F + V G Y + I Y N+ +F A PV
Sbjct: 731 EMVLADDNFSTIVAAVEEGRAIYNNMKQFIRYLISSNVGEVVCIFLTAALGLPEALIPVQ 790
Query: 550 NDWFLSLYNVFFTSLPVIALGVFDQDV 576
W N+ LP ALG D+
Sbjct: 791 LLWV----NLVTDGLPATALGFNPPDL 813
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 78/350 (22%), Positives = 128/350 (36%), Gaps = 64/350 (18%)
Query: 8 KPARARTSNLNEELGQVDTILSDKTGTLTCNSMEFIKCSIAGTSYGRGVTEVERAMARRK 67
K A R+ E LG I SDKTGTLT N M K I ++R
Sbjct: 329 KNAIVRSLPSVETLGCTSVICSDKTGTLTTNQMSVCKMFI-----------IDR------ 371
Query: 68 GSPLEEEVTEEQEDKASIKGFNFEDERIMNGSWVNEPHADVIQKFLRLLAICHTALPEVD 127
++ ++ E + + E E + N V D + + + A+C+ + + +
Sbjct: 372 ---IDGDLCLLNEFSVTGSTYAPEGEVLKNDKPVRSGQYDGLVELATICALCNDSSLDFN 428
Query: 128 EENGKISYEAESPDEAAFVIAARELGFEFYERTQTSIS-VHELDPVTGTKVERSYSLLNV 186
E G E+ + A + + F R + + + + V +++ ++
Sbjct: 429 ETKGIYEKVGEATETALTTLVEKMNVFNTEVRNLSKVERANACNSVIRQLMKKEFT---- 484
Query: 187 LEFSSSRKRMSVIV-----RSEEGTLLLLSKGA-----DSVMFERLAENGREFEEQTKEH 236
LEFS RK MSV R+ G + + KGA D + R+ KE
Sbjct: 485 LEFSRDRKSMSVYCSPAKSRAAVGNKMFV-KGAPEGVIDRCNYVRVGTTRVPMTGPVKEK 543
Query: 237 ----INEYADA--GLRTLILAYRELDEKEYKQF---NEEFTEAKNSVSADRXXXXXXXXX 287
I E+ LR L LA R+ K + + +F E + ++
Sbjct: 544 ILSVIKEWGTGRDTLRCLALATRDTPPKREEMVLDDSTKFMEYETDLT------------ 591
Query: 288 XXXXXXXXXGATAVEDKLQNGVPECIDKLAQAGIKLWVLTGDKMETAINI 337
G + D + V I AGI++ ++TGD TAI I
Sbjct: 592 -------FVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAI 634
>pdb|3RFU|A Chain A, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|B Chain B, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|C Chain C, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|D Chain D, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
Length = 736
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 24/34 (70%)
Query: 301 VEDKLQNGVPECIDKLAQAGIKLWVLTGDKMETA 334
VED +++ PE I +L Q+GI++ +LTGD TA
Sbjct: 551 VEDPIKSSTPETILELQQSGIEIVMLTGDSKRTA 584
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 42/98 (42%), Gaps = 17/98 (17%)
Query: 439 PKQKALVTRLVKTKTSSTTLAIGDGANDVGMLQEADIGVGISGVEGMQAVMSSDIAIAQF 498
P+ K+ + +K K +A GDG ND L +ADIG+ + +D+AI
Sbjct: 602 PEDKSRIVSELKDKGLIVAMA-GDGVNDAPALAKADIGIAMG--------TGTDVAIES- 651
Query: 499 RFLERLLLVHGHW----CYRRISSMICYFFYKNIAFGF 532
+ L+HG RR+S +N+ F F
Sbjct: 652 ---AGVTLLHGDLRGIAKARRLSESTMSNIRQNLFFAF 686
>pdb|3B8C|A Chain A, Crystal Structure Of A Plasma Membrane Proton Pump
pdb|3B8C|B Chain B, Crystal Structure Of A Plasma Membrane Proton Pump
Length = 885
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 184 LNVLEFSSSRKRMSVIVRSEEGTLLLLSKGADSVMFERLAENGREFEEQTKEHINEYADA 243
++ L F+ KR ++ G +SKGA + E LA+ + ++ I++YA+
Sbjct: 395 VHFLPFNPVDKRTALTYIDGSGNWHRVSKGAPEQILE-LAKASNDLSKKVLSIIDKYAER 453
Query: 244 GLRTLILAYRELDEK 258
GLR+L +A + + EK
Sbjct: 454 GLRSLAVARQVVPEK 468
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 19 EELGQVDTILSDKTGTLTCNSMEFIK 44
EE+ +D + SDKTGTLT N + K
Sbjct: 318 EEMAGMDVLCSDKTGTLTLNKLSVDK 343
>pdb|2IYE|A Chain A, Structure Of Catalytic Cpx-atpase Domain Copb-b
pdb|2IYE|C Chain C, Structure Of Catalytic Cpx-atpase Domain Copb-b
Length = 263
Score = 32.7 bits (73), Expect = 0.70, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 24/36 (66%)
Query: 1 MYYEETDKPARARTSNLNEELGQVDTILSDKTGTLT 36
+Y + K + SN+ E++ ++DTI+ DKTGTLT
Sbjct: 5 LYEKMLHKGMIIKNSNVYEKIKEIDTIIFDKTGTLT 40
>pdb|3SKX|A Chain A, Crystal Structure Of The Atp Binding Domain Of
Archaeoglobus Fulgidus Copb
Length = 280
Score = 32.7 bits (73), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 439 PKQKALVTRLVKTKTSSTTLAIGDGANDVGMLQEADIGVGISGVEGMQAVMSSDIAIAQ 497
P +KA + V+ K T +GDG ND L +AD+G+ I G AV ++DI + +
Sbjct: 192 PHEKAEKVKEVQQKY--VTAMVGDGVNDAPALAQADVGIAI-GAGTDVAVETADIVLVR 247
>pdb|3SKY|A Chain A, 2.1a Crystal Structure Of The Phosphate Bound Atp Binding
Domain Of Archaeoglobus Fulgidus Copb
Length = 274
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 439 PKQKALVTRLVKTKTSSTTLAIGDGANDVGMLQEADIGVGISGVEGMQAVMSSDIAIAQ 497
P +KA + V+ K T +GDG ND L +AD+G+ I G AV ++DI + +
Sbjct: 192 PHEKAEKVKEVQQKY--VTAMVGDGVNDAPALAQADVGIAI-GAGTDVAVETADIVLVR 247
>pdb|2RAR|A Chain A, X-Ray Crystallographic Structures Show Conservation Of A
Trigonal- Bipyramidal Intermediate In A
Phosphoryl-Transfer Superfamily.
pdb|2RAV|A Chain A, X-Ray Crystallographic Structures Show Conservation Of A
Trigonal- Bipyramidal Intermediate In A
Phosphoryl-Transfer Superfamily
Length = 261
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Query: 433 ICCRSSPKQKAL--VTRLVKTKTSSTTLAIGDGANDVGMLQEADIGVGI 479
+ + KQK + + R K T ++ GDG ND+ ML+ A IGV +
Sbjct: 181 VTAKGDTKQKGIDEIIRHFGIKLEET-MSFGDGGNDISMLRHAAIGVAM 228
>pdb|1YMQ|A Chain A, Had Superfamily Phosphotransferase Substrate
Diversification: Structure And Function Analysis Of The
Had Subclass Iib Sugar Phosphatase Bt4131
pdb|2RB5|A Chain A, X-ray Crystallographic Structures Show Conservation Of A
Trigonal- Bipyramidal Intermediate In A
Phosphoryl-transfer Superfamily.
pdb|2RBK|A Chain A, X-ray Crystallographic Structures Show Conservation Of A
Trigonal- Bipyramidal Intermediate In A
Phosphoryl-transfer Superfamily
Length = 261
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Query: 433 ICCRSSPKQKAL--VTRLVKTKTSSTTLAIGDGANDVGMLQEADIGVGI 479
+ + KQK + + R K T ++ GDG ND+ ML+ A IGV +
Sbjct: 181 VTAKGDTKQKGIDEIIRHFGIKLEET-MSFGDGGNDISMLRHAAIGVAM 228
>pdb|3P96|A Chain A, Crystal Structure Of Phosphoserine Phosphatase Serb From
Mycobacterium Avium, Native Form
Length = 415
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 25/40 (62%)
Query: 455 STTLAIGDGANDVGMLQEADIGVGISGVEGMQAVMSSDIA 494
+ T+A+GDGAND+ ML A +G+ + ++ V + ++
Sbjct: 340 AQTVAVGDGANDIDMLAAAGLGIAFNAKPALREVADASLS 379
>pdb|2YJ3|A Chain A, Conformational Changes In The Catalytic Domain Of The
Cpx- Atpase Copb-B Upon Nucleotide Binding
Length = 263
Score = 31.2 bits (69), Expect = 2.4, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 24/36 (66%)
Query: 1 MYYEETDKPARARTSNLNEELGQVDTILSDKTGTLT 36
+Y + K + SN+ E++ ++DTI+ +KTGTLT
Sbjct: 5 LYEKMLHKGMIIKNSNVYEKIKEIDTIIFEKTGTLT 40
>pdb|3P26|A Chain A, Crystal Structure Of S. Cerevisiae Hbs1 Protein
(Apo-Form), A Translational Gtpase Involved In Rna
Quality Control Pathways And Interacting With
Dom34PELOTA
pdb|3P26|B Chain B, Crystal Structure Of S. Cerevisiae Hbs1 Protein
(Apo-Form), A Translational Gtpase Involved In Rna
Quality Control Pathways And Interacting With
Dom34PELOTA
Length = 483
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 224 ENGREFEEQTKEHINEYADAGLRTLILAYRELDEKEYKQFNEEFTEAKNSV 274
E+G + + QTKEH+ + G+ LI+A ++D ++ Q + F E K+ +
Sbjct: 150 ESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQ--QRFEEIKSKL 198
>pdb|2YJ4|A Chain A, Conformational Changes In The Catalytic Domain Of The
Cpx- Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ4|B Chain B, Conformational Changes In The Catalytic Domain Of The
Cpx- Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ5|A Chain A, Conformational Changes In The Catalytic Domain Of The
Cpx- Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ5|B Chain B, Conformational Changes In The Catalytic Domain Of The
Cpx- Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ6|A Chain A, Conformational Changes In The Catalytic Domain Of The
Cpx-Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ6|B Chain B, Conformational Changes In The Catalytic Domain Of The
Cpx-Atpase Copb-B Upon Nucleotide Binding
Length = 263
Score = 31.2 bits (69), Expect = 2.6, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 24/36 (66%)
Query: 1 MYYEETDKPARARTSNLNEELGQVDTILSDKTGTLT 36
+Y + K + SN+ E++ ++DTI+ +KTGTLT
Sbjct: 5 LYEKMLHKGMIIKNSNVYEKIKEIDTIIFNKTGTLT 40
>pdb|3R4C|A Chain A, Divergence Of Structure And Function Among Phosphatases Of
The Haloalkanoate (Had) Enzyme Superfamily: Analysis Of
Bt1666 From Bacteroides Thetaiotaomicron
Length = 268
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 455 STTLAIGDGANDVGMLQEADIGVGISGV-EGMQAV 488
S +A GDG ND+ ML+ A IGV + E +Q+V
Sbjct: 211 SEIMACGDGGNDIPMLKAAGIGVAMGNASEKVQSV 245
>pdb|3N28|A Chain A, Crystal Structure Of Probable Phosphoserine Phosphatase
From Vibrio Cholerae, Unliganded Form
Length = 335
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 17/22 (77%)
Query: 457 TLAIGDGANDVGMLQEADIGVG 478
T+A+GDGAND+ M+ A +GV
Sbjct: 264 TVAVGDGANDLVMMAAAGLGVA 285
>pdb|3IZQ|1 Chain 1, Structure Of The Dom34-Hbs1-Gdpnp Complex Bound To A
Translating Ribosome
Length = 611
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 224 ENGREFEEQTKEHINEYADAGLRTLILAYRELDEKEYKQFNEEFTEAKNSV 274
E+G + + QTKEH+ + G+ LI+A ++D ++ Q + F E K+ +
Sbjct: 284 ESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQ--QRFEEIKSKL 332
>pdb|1TZ7|A Chain A, Aquifex Aeolicus Amylomaltase
pdb|1TZ7|B Chain B, Aquifex Aeolicus Amylomaltase
Length = 505
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 38/95 (40%), Gaps = 16/95 (16%)
Query: 92 DERIMNGSWVNEPHADVIQKFLRLLAICHTALPEVDEENGKISYEAESPDEAAFVIAARE 151
+E +NG WV P + +K L P + E+ G I+ E E + +R
Sbjct: 321 EETAVNGRWVKAPGKTLFKKLLSYFPKN----PFIAEDLGFITDEVRYLRETFKIPGSRV 376
Query: 152 LGFEFYERTQTSI------------SVHELDPVTG 174
+ F FY++ + S H+L P+ G
Sbjct: 377 IEFAFYDKESEHLPHNVEENNVYYTSTHDLPPIRG 411
>pdb|1MHS|A Chain A, Model Of Neurospora Crassa Proton Atpase
pdb|1MHS|B Chain B, Model Of Neurospora Crassa Proton Atpase
Length = 920
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 6/60 (10%)
Query: 422 FLELAIGCASVICCRSSPKQKALVTRLVKTKTSSTTLAIGDGANDVGMLQEADIGVGISG 481
F+E A G A V P+ K V +++ + + GDG ND L++AD G+ + G
Sbjct: 600 FVEAADGFAEVF-----PQHKYNVVEILQQRGYLVAMT-GDGVNDAPSLKKADTGIAVEG 653
>pdb|3M1Y|A Chain A, Crystal Structure Of A Phosphoserine Phosphatase (Serb)
From Helicobacter Pylori
pdb|3M1Y|B Chain B, Crystal Structure Of A Phosphoserine Phosphatase (Serb)
From Helicobacter Pylori
pdb|3M1Y|C Chain C, Crystal Structure Of A Phosphoserine Phosphatase (Serb)
From Helicobacter Pylori
pdb|3M1Y|D Chain D, Crystal Structure Of A Phosphoserine Phosphatase (Serb)
From Helicobacter Pylori
Length = 217
Score = 30.0 bits (66), Expect = 5.7, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 26/49 (53%)
Query: 438 SPKQKALVTRLVKTKTSSTTLAIGDGANDVGMLQEADIGVGISGVEGMQ 486
S + LV + + + + TL +GDGAND+ + A I + + E ++
Sbjct: 142 SKGEXLLVLQRLLNISKTNTLVVGDGANDLSXFKHAHIKIAFNAKEVLK 190
>pdb|1JNY|A Chain A, Crystal Structure Of Sulfolobus Solfataricus Elongation
Factor 1 Alpha In Complex With Gdp
pdb|1JNY|B Chain B, Crystal Structure Of Sulfolobus Solfataricus Elongation
Factor 1 Alpha In Complex With Gdp
pdb|1SKQ|A Chain A, The Crystal Structure Of Sulfolobus Solfataricus
Elongation Factor 1-Alpha In Complex With Magnesium And
Gdp
pdb|1SKQ|B Chain B, The Crystal Structure Of Sulfolobus Solfataricus
Elongation Factor 1-Alpha In Complex With Magnesium And
Gdp
Length = 435
Score = 29.3 bits (64), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 7/53 (13%)
Query: 224 ENGREFEEQTKEHINEYADAGLRTLILAYREL-------DEKEYKQFNEEFTE 269
E G E QT+EHI GL LI+A ++ DEK YK+ ++ ++
Sbjct: 123 EAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSK 175
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,990,116
Number of Sequences: 62578
Number of extensions: 809545
Number of successful extensions: 1771
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1698
Number of HSP's gapped (non-prelim): 79
length of query: 793
length of database: 14,973,337
effective HSP length: 107
effective length of query: 686
effective length of database: 8,277,491
effective search space: 5678358826
effective search space used: 5678358826
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)