Query 003826
Match_columns 793
No_of_seqs 406 out of 2098
Neff 7.4
Searched_HMMs 46136
Date Thu Mar 28 12:45:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003826.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003826hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5022 Myosin heavy chain [Cy 100.0 9E-131 2E-135 1157.4 53.1 542 2-560 279-834 (1463)
2 PTZ00014 myosin-A; Provisional 100.0 6E-125 1E-129 1113.3 44.1 493 2-509 308-815 (821)
3 cd01383 MYSc_type_VIII Myosin 100.0 5E-120 1E-124 1059.4 45.5 464 2-467 214-677 (677)
4 KOG0164 Myosin class I heavy c 100.0 2E-116 5E-121 962.7 39.0 537 2-565 223-789 (1001)
5 cd01381 MYSc_type_VII Myosin m 100.0 1E-115 3E-120 1022.8 45.0 454 2-467 209-671 (671)
6 cd01380 MYSc_type_V Myosin mot 100.0 2E-115 4E-120 1025.9 45.7 465 2-467 215-691 (691)
7 cd01384 MYSc_type_XI Myosin mo 100.0 1E-115 3E-120 1021.5 43.6 453 2-470 214-673 (674)
8 cd01378 MYSc_type_I Myosin mot 100.0 3E-115 7E-120 1021.7 43.7 451 2-467 212-674 (674)
9 KOG0160 Myosin class V heavy c 100.0 2E-114 3E-119 1001.6 46.5 538 2-560 218-758 (862)
10 cd01377 MYSc_type_II Myosin mo 100.0 1E-114 3E-119 1019.4 46.0 460 3-467 226-693 (693)
11 cd01387 MYSc_type_XV Myosin mo 100.0 1E-114 3E-119 1014.9 45.4 462 2-467 210-677 (677)
12 cd01385 MYSc_type_IX Myosin mo 100.0 1E-113 2E-118 1009.7 44.8 460 2-467 220-688 (692)
13 cd01382 MYSc_type_VI Myosin mo 100.0 2E-113 5E-118 1010.8 43.4 456 2-467 214-716 (717)
14 smart00242 MYSc Myosin. Large 100.0 1E-111 2E-116 996.6 43.6 453 2-468 218-677 (677)
15 KOG0162 Myosin class I heavy c 100.0 9E-113 2E-117 934.0 31.0 494 1-514 229-736 (1106)
16 cd01379 MYSc_type_III Myosin m 100.0 1E-110 3E-115 977.1 43.3 429 2-467 211-653 (653)
17 cd00124 MYSc Myosin motor doma 100.0 2E-110 5E-115 988.2 44.2 463 2-467 210-679 (679)
18 KOG0161 Myosin class II heavy 100.0 1E-108 2E-113 1015.4 48.9 508 2-536 299-815 (1930)
19 cd01386 MYSc_type_XVIII Myosin 100.0 1E-106 3E-111 955.1 43.8 450 15-467 225-767 (767)
20 PF00063 Myosin_head: Myosin h 100.0 2E-106 5E-111 963.9 42.4 455 2-456 213-689 (689)
21 KOG0163 Myosin class VI heavy 100.0 2E-101 4E-106 845.1 52.1 520 2-542 267-835 (1259)
22 KOG4229 Myosin VII, myosin IXB 100.0 1.9E-65 4.2E-70 607.2 15.8 555 3-564 273-1010(1062)
23 KOG0160 Myosin class V heavy c 98.1 4.5E-05 9.8E-10 91.2 16.1 73 492-568 671-743 (862)
24 KOG0161 Myosin class II heavy 98.1 0.00069 1.5E-08 87.5 25.9 283 77-417 324-627 (1930)
25 KOG0520 Uncharacterized conser 97.8 1.6E-05 3.4E-10 95.1 5.2 96 472-567 811-938 (975)
26 KOG2128 Ras GTPase-activating 97.3 0.0012 2.6E-08 81.3 11.1 92 475-568 539-647 (1401)
27 PF00612 IQ: IQ calmodulin-bin 97.3 0.00035 7.5E-09 44.3 3.3 19 521-539 2-20 (21)
28 KOG0164 Myosin class I heavy c 96.9 0.0032 7E-08 72.5 9.5 60 494-564 696-755 (1001)
29 COG5022 Myosin heavy chain [Cy 96.8 0.04 8.6E-07 68.9 18.2 99 471-570 793-892 (1463)
30 PF00612 IQ: IQ calmodulin-bin 96.8 0.0014 3E-08 41.5 3.0 21 543-563 1-21 (21)
31 KOG0520 Uncharacterized conser 96.4 0.0049 1.1E-07 74.4 6.5 50 519-568 809-858 (975)
32 PTZ00014 myosin-A; Provisional 96.0 0.016 3.5E-07 70.8 8.1 41 521-561 778-818 (821)
33 smart00015 IQ Short calmodulin 95.9 0.0091 2E-07 39.9 3.0 19 521-539 4-22 (26)
34 smart00015 IQ Short calmodulin 95.5 0.0089 1.9E-07 40.0 2.0 20 494-513 3-22 (26)
35 KOG2128 Ras GTPase-activating 94.9 0.34 7.3E-06 60.7 14.0 91 476-566 512-615 (1401)
36 KOG4229 Myosin VII, myosin IXB 93.7 0.044 9.6E-07 67.9 3.2 172 338-511 642-819 (1062)
37 KOG0163 Myosin class VI heavy 88.9 43 0.00093 40.2 20.0 28 27-56 371-398 (1259)
38 PRK13729 conjugal transfer pil 88.6 4.6 0.0001 46.1 12.0 60 594-657 70-129 (475)
39 PF15290 Syntaphilin: Golgi-lo 87.5 7.2 0.00016 41.2 11.6 39 588-626 70-108 (305)
40 PF09755 DUF2046: Uncharacteri 83.4 64 0.0014 35.1 16.8 61 597-657 139-203 (310)
41 PF06005 DUF904: Protein of un 81.8 31 0.00067 29.2 11.5 43 590-632 8-50 (72)
42 KOG3684 Ca2+-activated K+ chan 79.8 66 0.0014 36.7 15.8 39 501-540 346-384 (489)
43 COG3883 Uncharacterized protei 79.7 19 0.0004 38.3 11.0 60 586-645 52-111 (265)
44 PF06005 DUF904: Protein of un 78.8 33 0.00071 29.1 10.2 52 586-637 18-69 (72)
45 TIGR02449 conserved hypothetic 78.5 27 0.00058 29.0 9.3 53 589-641 3-55 (65)
46 PF10205 KLRAQ: Predicted coil 75.5 42 0.00091 30.4 10.4 55 583-637 16-70 (102)
47 TIGR02894 DNA_bind_RsfA transc 75.5 62 0.0013 31.7 12.4 53 597-653 101-153 (161)
48 COG4026 Uncharacterized protei 75.1 50 0.0011 33.9 12.0 35 597-631 153-187 (290)
49 PRK11637 AmiB activator; Provi 74.9 25 0.00054 40.3 11.6 10 620-629 102-111 (428)
50 KOG0977 Nuclear envelope prote 74.7 1.6E+02 0.0036 34.6 17.8 78 581-658 115-195 (546)
51 KOG0942 E3 ubiquitin protein l 74.3 4 8.6E-05 49.5 4.8 39 506-544 15-53 (1001)
52 KOG0804 Cytoplasmic Zn-finger 74.1 44 0.00096 37.8 12.4 73 583-655 379-451 (493)
53 KOG0971 Microtubule-associated 72.3 1.5E+02 0.0032 36.7 16.7 69 583-655 973-1049(1243)
54 PRK09039 hypothetical protein; 71.6 43 0.00092 37.3 12.0 140 581-726 125-267 (343)
55 PF12718 Tropomyosin_1: Tropom 71.0 29 0.00064 33.5 9.2 63 590-652 77-142 (143)
56 PRK09039 hypothetical protein; 70.8 1.7E+02 0.0036 32.6 16.4 39 595-633 146-184 (343)
57 COG4026 Uncharacterized protei 70.5 44 0.00096 34.2 10.4 8 445-452 34-41 (290)
58 PF04849 HAP1_N: HAP1 N-termin 69.7 1.1E+02 0.0024 33.3 14.0 68 576-643 224-291 (306)
59 PRK10884 SH3 domain-containing 69.1 33 0.00071 35.3 9.6 53 588-640 120-172 (206)
60 PF00038 Filament: Intermediat 68.7 63 0.0014 35.1 12.5 17 340-356 48-64 (312)
61 PRK11637 AmiB activator; Provi 68.4 55 0.0012 37.5 12.4 49 588-636 63-111 (428)
62 COG4942 Membrane-bound metallo 68.3 59 0.0013 36.9 12.0 74 581-654 54-127 (420)
63 PF08614 ATG16: Autophagy prot 68.3 96 0.0021 31.4 12.8 64 580-643 117-180 (194)
64 PF10211 Ax_dynein_light: Axon 67.8 1.4E+02 0.0031 30.1 15.6 33 523-555 74-106 (189)
65 PF08826 DMPK_coil: DMPK coile 67.8 41 0.00089 27.6 7.9 36 602-637 20-55 (61)
66 PRK10884 SH3 domain-containing 67.7 61 0.0013 33.3 11.2 14 445-458 26-39 (206)
67 PF12325 TMF_TATA_bd: TATA ele 67.2 1.1E+02 0.0024 28.6 12.0 48 586-633 37-87 (120)
68 COG3883 Uncharacterized protei 66.4 87 0.0019 33.4 12.1 69 585-653 44-112 (265)
69 COG1579 Zn-ribbon protein, pos 65.9 68 0.0015 33.7 11.2 48 590-637 93-140 (239)
70 KOG4005 Transcription factor X 65.7 62 0.0014 33.5 10.4 29 594-622 91-119 (292)
71 COG1579 Zn-ribbon protein, pos 65.5 1.8E+02 0.004 30.5 15.6 67 586-652 103-169 (239)
72 KOG4427 E3 ubiquitin protein l 65.3 11 0.00024 44.8 5.8 20 494-513 30-49 (1096)
73 PF12718 Tropomyosin_1: Tropom 64.4 1.1E+02 0.0023 29.6 11.6 13 702-714 106-118 (143)
74 PF04111 APG6: Autophagy prote 64.3 86 0.0019 34.4 12.3 45 583-627 47-91 (314)
75 PF08317 Spc7: Spc7 kinetochor 64.2 2.3E+02 0.005 31.2 16.2 120 530-653 142-265 (325)
76 COG2433 Uncharacterized conser 64.2 70 0.0015 37.7 11.7 33 735-770 609-642 (652)
77 KOG0971 Microtubule-associated 63.4 44 0.00096 40.9 10.2 18 619-636 453-470 (1243)
78 PF11932 DUF3450: Protein of u 62.9 1.1E+02 0.0024 32.3 12.6 51 587-637 64-114 (251)
79 KOG4005 Transcription factor X 62.9 48 0.001 34.3 9.0 49 589-637 93-141 (292)
80 KOG0942 E3 ubiquitin protein l 62.2 91 0.002 38.5 12.6 35 532-566 18-52 (1001)
81 KOG4427 E3 ubiquitin protein l 61.5 1E+02 0.0022 37.2 12.5 35 517-557 27-61 (1096)
82 KOG2129 Uncharacterized conser 61.2 1.3E+02 0.0028 33.8 12.5 59 597-655 162-224 (552)
83 PF10211 Ax_dynein_light: Axon 60.8 1.9E+02 0.0042 29.2 14.4 22 546-567 74-95 (189)
84 PF06785 UPF0242: Uncharacteri 60.6 2.6E+02 0.0057 30.6 16.4 34 590-623 145-178 (401)
85 PF12325 TMF_TATA_bd: TATA ele 60.1 1.5E+02 0.0033 27.7 12.2 49 594-642 69-117 (120)
86 PF06156 DUF972: Protein of un 60.0 48 0.001 30.4 7.9 36 587-622 16-51 (107)
87 PF13851 GAS: Growth-arrest sp 59.9 1.2E+02 0.0026 31.0 11.7 27 597-623 59-85 (201)
88 COG3074 Uncharacterized protei 59.7 1E+02 0.0022 25.7 10.5 44 602-645 27-73 (79)
89 KOG0995 Centromere-associated 59.7 2.8E+02 0.006 32.7 15.4 103 535-646 264-378 (581)
90 PF15294 Leu_zip: Leucine zipp 59.3 1.1E+02 0.0024 32.9 11.4 78 580-657 133-226 (278)
91 PF05266 DUF724: Protein of un 58.9 1.2E+02 0.0026 30.8 11.3 7 642-648 162-168 (190)
92 PF04859 DUF641: Plant protein 58.8 32 0.00069 32.7 6.6 52 578-629 79-130 (131)
93 PRK13729 conjugal transfer pil 57.9 45 0.00097 38.4 8.8 55 583-637 66-120 (475)
94 PF06637 PV-1: PV-1 protein (P 55.8 1.2E+02 0.0025 33.8 11.1 22 637-658 361-382 (442)
95 PRK15422 septal ring assembly 55.7 1.3E+02 0.0029 25.8 9.3 28 604-631 29-56 (79)
96 KOG0377 Protein serine/threoni 55.7 15 0.00032 41.3 4.4 31 521-552 18-48 (631)
97 PF08826 DMPK_coil: DMPK coile 55.2 1.2E+02 0.0025 24.9 9.8 40 588-627 20-59 (61)
98 PF13851 GAS: Growth-arrest sp 55.0 1.3E+02 0.0027 30.9 10.9 52 587-638 87-138 (201)
99 PF11559 ADIP: Afadin- and alp 54.5 2.1E+02 0.0045 27.6 15.5 57 583-639 63-119 (151)
100 PF09726 Macoilin: Transmembra 54.5 4.6E+02 0.01 32.2 17.2 31 589-619 548-578 (697)
101 TIGR03752 conj_TIGR03752 integ 54.3 86 0.0019 36.1 10.3 38 579-616 59-96 (472)
102 PF03962 Mnd1: Mnd1 family; I 52.9 94 0.002 31.5 9.5 23 597-619 73-95 (188)
103 PF08172 CASP_C: CASP C termin 52.2 63 0.0014 34.2 8.4 52 579-630 79-130 (248)
104 PRK13169 DNA replication intia 52.2 77 0.0017 29.2 7.8 38 586-623 15-52 (110)
105 PF06785 UPF0242: Uncharacteri 52.2 3.6E+02 0.0077 29.7 15.0 51 587-637 121-171 (401)
106 PF10805 DUF2730: Protein of u 52.1 1.6E+02 0.0035 26.8 10.0 48 587-634 43-92 (106)
107 PF09304 Cortex-I_coil: Cortex 52.1 1.4E+02 0.003 27.3 9.1 42 591-632 35-76 (107)
108 PF09744 Jnk-SapK_ap_N: JNK_SA 52.0 1.6E+02 0.0035 28.9 10.6 57 594-650 44-100 (158)
109 KOG0162 Myosin class I heavy c 51.9 15 0.00032 43.7 3.9 28 522-549 698-725 (1106)
110 COG2433 Uncharacterized conser 51.5 1.3E+02 0.0029 35.5 11.3 14 699-712 576-589 (652)
111 PF10168 Nup88: Nuclear pore c 51.3 2.4E+02 0.0053 34.7 14.2 35 623-657 630-664 (717)
112 PF10267 Tmemb_cc2: Predicted 51.1 1.7E+02 0.0036 33.3 11.8 7 595-601 260-266 (395)
113 PF13094 CENP-Q: CENP-Q, a CEN 50.7 1.3E+02 0.0029 29.3 10.0 56 588-643 29-84 (160)
114 PF00170 bZIP_1: bZIP transcri 50.6 1.2E+02 0.0027 24.6 8.2 27 597-623 30-56 (64)
115 PF00769 ERM: Ezrin/radixin/mo 49.5 1.6E+02 0.0034 31.2 10.9 67 589-655 50-126 (246)
116 PF10481 CENP-F_N: Cenp-F N-te 49.2 1.6E+02 0.0034 31.4 10.3 36 703-739 169-206 (307)
117 KOG2391 Vacuolar sorting prote 49.1 1E+02 0.0022 33.8 9.3 36 613-648 234-269 (365)
118 PF06632 XRCC4: DNA double-str 48.9 1.5E+02 0.0033 32.9 11.0 60 594-653 145-208 (342)
119 PF00038 Filament: Intermediat 47.7 2.9E+02 0.0063 29.9 13.2 49 603-651 226-274 (312)
120 TIGR03752 conj_TIGR03752 integ 47.6 1.9E+02 0.004 33.5 11.5 46 586-631 59-104 (472)
121 PF04102 SlyX: SlyX; InterPro 47.5 1E+02 0.0023 25.7 7.4 38 594-631 5-42 (69)
122 KOG0804 Cytoplasmic Zn-finger 46.8 4.8E+02 0.01 29.9 14.2 12 152-163 74-85 (493)
123 PF05266 DUF724: Protein of un 46.3 3.3E+02 0.0072 27.6 12.3 12 642-653 169-180 (190)
124 TIGR03185 DNA_S_dndD DNA sulfu 46.0 1.7E+02 0.0037 35.5 12.0 7 526-532 171-177 (650)
125 PF04111 APG6: Autophagy prote 45.9 2.4E+02 0.0052 31.0 12.0 26 588-613 66-91 (314)
126 COG3879 Uncharacterized protei 45.2 1.3E+02 0.0027 31.8 9.0 55 605-659 55-109 (247)
127 smart00338 BRLZ basic region l 44.5 1.4E+02 0.003 24.4 7.6 30 597-626 30-59 (65)
128 PF04201 TPD52: Tumour protein 44.4 1.3E+02 0.0027 29.7 8.3 51 596-646 32-87 (162)
129 PF05837 CENP-H: Centromere pr 44.0 2.3E+02 0.005 25.8 9.7 36 587-622 11-46 (106)
130 PRK00295 hypothetical protein; 43.6 1.9E+02 0.0041 24.1 8.3 29 595-623 7-35 (68)
131 PF11932 DUF3450: Protein of u 43.1 2.8E+02 0.006 29.3 11.7 50 588-637 51-100 (251)
132 PF10779 XhlA: Haemolysin XhlA 43.0 1.5E+02 0.0031 24.9 7.6 46 591-636 4-49 (71)
133 PRK12704 phosphodiesterase; Pr 42.9 6.3E+02 0.014 29.8 17.7 9 705-713 232-240 (520)
134 PRK04406 hypothetical protein; 42.6 2.1E+02 0.0046 24.4 8.5 32 592-623 10-41 (75)
135 PF10805 DUF2730: Protein of u 42.5 2.7E+02 0.0058 25.4 11.7 52 587-638 36-89 (106)
136 PF00261 Tropomyosin: Tropomyo 42.2 3.4E+02 0.0074 28.4 12.1 35 602-636 171-205 (237)
137 PRK00736 hypothetical protein; 42.0 1.8E+02 0.0039 24.3 7.9 24 595-618 7-30 (68)
138 PF10186 Atg14: UV radiation r 41.9 4.5E+02 0.0099 27.9 14.1 19 639-657 133-151 (302)
139 KOG4571 Activating transcripti 41.9 1.4E+02 0.003 32.2 8.8 36 596-631 251-286 (294)
140 PF09726 Macoilin: Transmembra 41.8 2E+02 0.0044 35.2 11.5 49 603-655 470-518 (697)
141 PRK02119 hypothetical protein; 41.7 2E+02 0.0044 24.4 8.3 32 592-623 8-39 (73)
142 PF07888 CALCOCO1: Calcium bin 41.6 2.6E+02 0.0055 33.1 11.7 34 604-637 196-229 (546)
143 PF07106 TBPIP: Tat binding pr 41.6 1.2E+02 0.0026 29.9 8.2 23 738-760 144-166 (169)
144 KOG4403 Cell surface glycoprot 41.1 2.6E+02 0.0056 31.7 11.0 76 580-658 253-328 (575)
145 PF08763 Ca_chan_IQ: Voltage g 41.1 29 0.00062 25.1 2.5 18 521-538 10-27 (35)
146 PF07106 TBPIP: Tat binding pr 40.3 1.4E+02 0.003 29.4 8.4 24 585-608 78-101 (169)
147 PRK04325 hypothetical protein; 40.3 1.9E+02 0.004 24.6 7.9 37 594-630 10-46 (74)
148 PF07926 TPR_MLP1_2: TPR/MLP1/ 40.2 2.9E+02 0.0063 26.0 10.2 30 598-627 71-100 (132)
149 PF05377 FlaC_arch: Flagella a 40.2 1.3E+02 0.0028 24.2 6.3 32 591-622 5-36 (55)
150 PF03962 Mnd1: Mnd1 family; I 40.0 3.7E+02 0.008 27.2 11.4 18 614-631 110-127 (188)
151 PRK00888 ftsB cell division pr 39.9 1.1E+02 0.0023 28.0 6.8 22 596-617 37-58 (105)
152 KOG4673 Transcription factor T 39.8 3.8E+02 0.0082 32.3 12.5 48 590-637 715-762 (961)
153 PF04102 SlyX: SlyX; InterPro 39.7 1.6E+02 0.0035 24.5 7.4 42 591-632 9-50 (69)
154 PRK10361 DNA recombination pro 39.4 6.8E+02 0.015 29.2 14.9 10 720-729 241-250 (475)
155 PF04849 HAP1_N: HAP1 N-termin 39.1 1.1E+02 0.0024 33.4 7.7 63 595-657 162-224 (306)
156 KOG4360 Uncharacterized coiled 38.7 6.7E+02 0.014 29.3 13.9 36 583-618 230-265 (596)
157 KOG0250 DNA repair protein RAD 38.3 7.8E+02 0.017 31.5 15.6 34 736-769 658-701 (1074)
158 PF14193 DUF4315: Domain of un 38.2 2.7E+02 0.0059 24.3 8.8 31 597-627 5-35 (83)
159 TIGR01069 mutS2 MutS2 family p 38.0 2.4E+02 0.0052 35.1 11.6 12 43-54 87-98 (771)
160 PF15290 Syntaphilin: Golgi-lo 37.7 2.2E+02 0.0049 30.4 9.4 73 581-657 70-142 (305)
161 PF10205 KLRAQ: Predicted coil 37.7 3.2E+02 0.0069 24.9 12.2 60 591-650 10-72 (102)
162 PRK00409 recombination and DNA 37.6 2.8E+02 0.0061 34.5 12.1 47 9-58 57-104 (782)
163 smart00787 Spc7 Spc7 kinetocho 37.2 2.4E+02 0.0053 30.9 10.3 11 353-363 14-24 (312)
164 PF10883 DUF2681: Protein of u 36.9 3E+02 0.0064 24.3 8.9 43 594-636 24-66 (87)
165 PRK02793 phi X174 lysis protei 36.6 2.3E+02 0.0049 24.0 7.8 37 593-629 8-44 (72)
166 PF06156 DUF972: Protein of un 36.4 2.4E+02 0.0053 25.8 8.5 28 596-623 11-38 (107)
167 KOG4603 TBP-1 interacting prot 36.4 2.8E+02 0.006 27.5 9.2 22 611-632 120-141 (201)
168 KOG0995 Centromere-associated 36.3 3.5E+02 0.0075 32.0 11.5 31 739-769 467-497 (581)
169 PF15254 CCDC14: Coiled-coil d 35.8 5.5E+02 0.012 31.5 13.3 18 641-658 545-562 (861)
170 PRK02119 hypothetical protein; 35.4 2.8E+02 0.006 23.5 8.1 13 642-654 40-52 (73)
171 KOG1962 B-cell receptor-associ 35.4 5.3E+02 0.011 26.8 14.0 11 432-442 14-24 (216)
172 PF07888 CALCOCO1: Calcium bin 35.1 4.3E+02 0.0093 31.3 12.2 15 643-657 280-294 (546)
173 PF00769 ERM: Ezrin/radixin/mo 34.9 2.8E+02 0.0061 29.3 10.1 14 755-768 187-200 (246)
174 KOG2264 Exostosin EXT1L [Signa 34.8 3E+02 0.0065 32.3 10.5 10 713-722 217-226 (907)
175 PRK13182 racA polar chromosome 34.8 4.2E+02 0.009 26.5 10.7 30 598-627 90-119 (175)
176 TIGR02894 DNA_bind_RsfA transc 34.8 2.3E+02 0.0049 27.9 8.4 30 590-619 108-137 (161)
177 PRK00846 hypothetical protein; 34.6 2.9E+02 0.0063 23.8 8.1 36 593-628 13-48 (77)
178 PRK12704 phosphodiesterase; Pr 34.5 5.4E+02 0.012 30.4 13.3 8 703-710 289-296 (520)
179 KOG0018 Structural maintenance 34.5 7.4E+02 0.016 31.7 14.4 51 591-641 301-351 (1141)
180 KOG1029 Endocytic adaptor prot 34.1 9.8E+02 0.021 29.5 16.6 24 599-622 436-459 (1118)
181 PF00261 Tropomyosin: Tropomyo 34.1 4.6E+02 0.0099 27.4 11.5 13 594-606 135-147 (237)
182 TIGR02680 conserved hypothetic 33.8 1.3E+03 0.028 30.8 18.0 38 499-536 224-262 (1353)
183 PF06810 Phage_GP20: Phage min 33.8 4E+02 0.0086 26.1 10.2 25 619-643 56-80 (155)
184 TIGR03185 DNA_S_dndD DNA sulfu 33.7 2.9E+02 0.0064 33.5 11.4 21 611-631 266-286 (650)
185 TIGR03319 YmdA_YtgF conserved 33.6 5.7E+02 0.012 30.2 13.2 20 701-720 281-300 (514)
186 KOG0243 Kinesin-like protein [ 33.5 3.4E+02 0.0074 34.5 11.6 63 594-656 484-549 (1041)
187 PF10212 TTKRSYEDQ: Predicted 33.4 3.3E+02 0.0071 31.9 10.7 60 590-653 445-508 (518)
188 PF10168 Nup88: Nuclear pore c 33.3 3.6E+02 0.0079 33.2 11.9 19 358-376 423-441 (717)
189 PF10146 zf-C4H2: Zinc finger- 33.2 5.9E+02 0.013 26.7 12.3 60 595-654 34-103 (230)
190 PF05667 DUF812: Protein of un 32.9 4.5E+02 0.0098 31.6 12.3 10 272-281 79-88 (594)
191 TIGR01069 mutS2 MutS2 family p 32.9 3.4E+02 0.0073 33.8 11.7 7 433-439 425-431 (771)
192 PF12709 Kinetocho_Slk19: Cent 32.8 2.2E+02 0.0047 25.1 7.1 38 586-623 42-79 (87)
193 PF05278 PEARLI-4: Arabidopsis 32.8 4.5E+02 0.0097 28.2 10.9 8 401-408 91-98 (269)
194 PF07716 bZIP_2: Basic region 32.8 2.1E+02 0.0046 22.4 6.7 25 596-620 28-52 (54)
195 PRK00409 recombination and DNA 32.7 3.2E+02 0.007 34.0 11.5 11 389-399 393-403 (782)
196 PF07798 DUF1640: Protein of u 32.6 5.1E+02 0.011 25.7 14.1 31 624-654 123-153 (177)
197 PRK00106 hypothetical protein; 32.5 4.9E+02 0.011 30.9 12.3 28 700-729 301-328 (535)
198 PF05278 PEARLI-4: Arabidopsis 32.3 5.4E+02 0.012 27.6 11.4 24 607-630 207-230 (269)
199 PF04880 NUDE_C: NUDE protein, 32.0 74 0.0016 31.5 4.7 24 595-618 2-25 (166)
200 PRK00888 ftsB cell division pr 31.9 1.7E+02 0.0036 26.7 6.7 30 597-626 31-60 (105)
201 PF13094 CENP-Q: CENP-Q, a CEN 31.8 4.8E+02 0.01 25.3 10.6 54 594-647 28-81 (160)
202 PF05377 FlaC_arch: Flagella a 31.5 2.1E+02 0.0045 23.0 6.2 35 596-630 3-37 (55)
203 PF10498 IFT57: Intra-flagella 31.5 7.9E+02 0.017 27.6 15.0 16 642-657 304-319 (359)
204 KOG0250 DNA repair protein RAD 31.4 1.2E+03 0.026 29.9 15.7 16 756-771 709-724 (1074)
205 PF05667 DUF812: Protein of un 31.4 4.6E+02 0.0099 31.6 12.0 6 217-222 41-46 (594)
206 PF14282 FlxA: FlxA-like prote 31.0 1.9E+02 0.0041 26.4 7.0 12 639-650 58-69 (106)
207 COG3879 Uncharacterized protei 30.8 2.7E+02 0.0058 29.4 8.8 54 597-650 54-107 (247)
208 PF06295 DUF1043: Protein of u 30.8 4.6E+02 0.01 24.7 11.2 55 604-658 29-83 (128)
209 PF15272 BBP1_C: Spindle pole 30.4 6E+02 0.013 25.9 11.5 59 591-649 87-149 (196)
210 PF12004 DUF3498: Domain of un 30.4 17 0.00037 42.1 0.0 80 580-662 377-456 (495)
211 PF03938 OmpH: Outer membrane 30.3 4.1E+02 0.0089 25.5 9.8 19 639-657 109-127 (158)
212 PF12128 DUF3584: Protein of u 29.9 1.3E+03 0.027 30.5 16.8 56 600-655 313-375 (1201)
213 PRK02793 phi X174 lysis protei 29.9 3.4E+02 0.0074 22.9 8.3 12 642-653 39-50 (72)
214 KOG1029 Endocytic adaptor prot 29.8 1.1E+03 0.025 29.0 15.8 15 589-603 489-503 (1118)
215 KOG3684 Ca2+-activated K+ chan 29.8 9.2E+02 0.02 27.9 18.6 41 620-660 429-469 (489)
216 KOG0353 ATP-dependent DNA heli 29.8 1.7E+02 0.0038 32.5 7.4 18 663-680 63-80 (695)
217 PF10146 zf-C4H2: Zinc finger- 29.7 6.7E+02 0.015 26.3 12.2 38 600-637 53-90 (230)
218 PRK13169 DNA replication intia 29.7 2.9E+02 0.0064 25.5 7.9 29 595-623 10-38 (110)
219 PF06409 NPIP: Nuclear pore co 29.6 6.5E+02 0.014 26.3 10.9 46 599-644 133-178 (265)
220 COG5185 HEC1 Protein involved 29.4 9.4E+02 0.02 27.8 13.3 42 607-648 375-416 (622)
221 KOG0933 Structural maintenance 29.4 4.2E+02 0.009 33.5 11.1 23 435-457 604-631 (1174)
222 COG3074 Uncharacterized protei 29.3 3.4E+02 0.0075 22.8 10.4 18 605-622 23-40 (79)
223 KOG4673 Transcription factor T 28.9 1.1E+03 0.024 28.6 18.1 10 744-753 653-662 (961)
224 PF06818 Fez1: Fez1; InterPro 28.9 6.5E+02 0.014 25.8 11.1 17 698-714 136-152 (202)
225 PF07926 TPR_MLP1_2: TPR/MLP1/ 28.8 5E+02 0.011 24.5 12.2 51 603-653 62-112 (132)
226 PF15035 Rootletin: Ciliary ro 28.4 6.3E+02 0.014 25.5 13.6 47 598-644 86-132 (182)
227 PF06810 Phage_GP20: Phage min 28.2 5.7E+02 0.012 25.0 10.7 38 587-624 28-68 (155)
228 PF07499 RuvA_C: RuvA, C-termi 28.2 87 0.0019 24.0 3.6 27 26-55 3-29 (47)
229 PRK00106 hypothetical protein; 28.1 8.5E+02 0.018 28.9 13.3 23 702-724 244-269 (535)
230 KOG3990 Uncharacterized conser 28.0 3.3E+02 0.0071 28.7 8.6 70 581-654 227-296 (305)
231 PHA02562 46 endonuclease subun 27.7 3.6E+02 0.0079 31.8 10.7 21 692-712 466-486 (562)
232 PF14818 DUF4482: Domain of un 27.4 1.2E+02 0.0026 29.1 5.1 44 612-655 3-50 (141)
233 PF12777 MT: Microtubule-bindi 27.3 2.1E+02 0.0046 31.8 8.0 10 522-531 195-204 (344)
234 PF14662 CCDC155: Coiled-coil 27.1 6.8E+02 0.015 25.5 11.5 26 605-630 79-104 (193)
235 PF15188 CCDC-167: Coiled-coil 26.9 3.3E+02 0.0072 23.9 7.3 56 580-635 6-64 (85)
236 KOG0933 Structural maintenance 26.9 1.2E+03 0.027 29.6 14.4 17 737-753 963-979 (1174)
237 PF07439 DUF1515: Protein of u 26.8 5E+02 0.011 23.9 8.5 54 602-655 10-63 (112)
238 KOG0377 Protein serine/threoni 26.7 57 0.0012 36.8 3.2 19 471-489 17-35 (631)
239 PF12329 TMF_DNA_bd: TATA elem 26.6 4E+02 0.0086 22.6 10.0 21 609-629 35-55 (74)
240 KOG4603 TBP-1 interacting prot 26.6 4.3E+02 0.0093 26.3 8.7 17 706-722 165-181 (201)
241 TIGR00219 mreC rod shape-deter 26.6 1.7E+02 0.0037 31.6 6.9 24 601-624 67-90 (283)
242 PF12072 DUF3552: Domain of un 26.5 6.9E+02 0.015 25.4 17.0 12 502-513 13-24 (201)
243 PF02403 Seryl_tRNA_N: Seryl-t 26.5 4.7E+02 0.01 23.4 9.2 29 609-637 69-97 (108)
244 PF07195 FliD_C: Flagellar hoo 26.0 1.9E+02 0.0041 30.3 7.0 44 608-651 194-237 (239)
245 PF07407 Seadorna_VP6: Seadorn 25.9 2E+02 0.0044 31.3 6.9 40 597-636 36-77 (420)
246 TIGR03319 YmdA_YtgF conserved 25.8 1.1E+03 0.025 27.7 17.7 12 703-714 224-235 (514)
247 PF10234 Cluap1: Clusterin-ass 25.7 5.7E+02 0.012 27.4 10.4 13 400-412 3-15 (267)
248 PF07407 Seadorna_VP6: Seadorn 25.6 3.1E+02 0.0067 30.0 8.2 23 698-720 188-211 (420)
249 PRK00295 hypothetical protein; 25.5 4E+02 0.0086 22.2 8.1 33 590-622 9-41 (68)
250 PHA02562 46 endonuclease subun 25.5 4.1E+02 0.0089 31.3 10.6 45 592-636 357-401 (562)
251 KOG2264 Exostosin EXT1L [Signa 25.4 3.9E+02 0.0085 31.4 9.4 14 698-711 209-222 (907)
252 PRK00736 hypothetical protein; 25.4 4E+02 0.0087 22.2 8.1 29 590-618 9-37 (68)
253 TIGR02680 conserved hypothetic 25.4 1.8E+03 0.038 29.7 22.7 29 737-765 457-485 (1353)
254 PRK04406 hypothetical protein; 25.3 4.3E+02 0.0093 22.5 8.7 12 642-653 42-53 (75)
255 PF03978 Borrelia_REV: Borreli 25.2 4.6E+02 0.01 25.6 8.5 54 602-657 49-102 (160)
256 KOG1003 Actin filament-coating 25.2 6.1E+02 0.013 25.8 9.7 68 585-652 3-73 (205)
257 PF10186 Atg14: UV radiation r 24.9 8.4E+02 0.018 25.8 16.1 13 694-706 196-208 (302)
258 KOG0976 Rho/Rac1-interacting s 24.9 6.7E+02 0.014 31.0 11.4 13 754-766 288-300 (1265)
259 KOG0243 Kinesin-like protein [ 24.7 1.1E+03 0.024 30.2 13.8 31 588-618 485-515 (1041)
260 PF09738 DUF2051: Double stran 24.6 9.5E+02 0.02 26.3 16.4 15 641-655 149-163 (302)
261 KOG2391 Vacuolar sorting prote 24.6 7E+02 0.015 27.6 10.7 37 586-622 232-268 (365)
262 TIGR02169 SMC_prok_A chromosom 24.6 1.6E+03 0.035 28.9 20.2 9 743-751 678-686 (1164)
263 COG4467 Regulator of replicati 24.3 2.6E+02 0.0055 25.6 6.2 42 584-625 13-54 (114)
264 PF02403 Seryl_tRNA_N: Seryl-t 24.2 5.2E+02 0.011 23.1 9.9 17 619-635 72-88 (108)
265 KOG4343 bZIP transcription fac 24.0 2.3E+02 0.0049 33.0 7.3 42 586-627 302-343 (655)
266 PF12777 MT: Microtubule-bindi 23.9 6.3E+02 0.014 28.0 11.0 20 738-757 241-260 (344)
267 PF12240 Angiomotin_C: Angiomo 23.5 8.1E+02 0.018 25.1 12.1 47 608-654 58-104 (205)
268 KOG4571 Activating transcripti 23.5 6.4E+02 0.014 27.3 10.1 27 610-636 251-277 (294)
269 PRK14160 heat shock protein Gr 23.4 5.5E+02 0.012 26.5 9.4 50 588-637 56-105 (211)
270 PF10376 Mei5: Double-strand r 23.0 5.4E+02 0.012 26.8 9.4 54 597-650 142-196 (221)
271 PHA01976 helix-turn-helix prot 22.9 69 0.0015 25.9 2.4 57 28-93 6-62 (67)
272 PF15397 DUF4618: Domain of un 22.8 9.4E+02 0.02 25.7 11.2 19 587-605 82-100 (258)
273 PF03961 DUF342: Protein of un 22.7 5E+02 0.011 29.9 10.2 6 217-222 30-35 (451)
274 COG4056 McrC Methyl coenzyme M 22.6 15 0.00033 35.4 -1.8 29 32-60 87-115 (204)
275 PF08667 BetR: BetR domain; I 22.5 1.9E+02 0.0042 28.1 5.6 68 21-93 2-69 (147)
276 PRK14161 heat shock protein Gr 22.4 6E+02 0.013 25.5 9.3 46 591-636 17-62 (178)
277 PRK11677 hypothetical protein; 22.4 6.4E+02 0.014 24.1 9.0 55 604-658 33-87 (134)
278 PF04977 DivIC: Septum formati 22.4 3E+02 0.0066 22.9 6.4 21 597-617 28-48 (80)
279 PF11471 Sugarporin_N: Maltopo 22.3 1.7E+02 0.0038 23.8 4.5 12 612-623 37-48 (60)
280 PRK11546 zraP zinc resistance 22.3 7.2E+02 0.016 24.1 10.8 27 586-612 54-80 (143)
281 KOG0288 WD40 repeat protein Ti 22.2 1.2E+03 0.026 26.6 15.3 58 605-664 88-145 (459)
282 PF03338 Pox_J1: Poxvirus J1 p 22.1 1.9E+02 0.0042 27.7 5.3 71 291-372 64-135 (145)
283 PRK03918 chromosome segregatio 22.1 6.8E+02 0.015 31.4 12.1 10 452-461 129-138 (880)
284 TIGR02169 SMC_prok_A chromosom 22.1 1.8E+03 0.038 28.5 22.5 17 431-447 121-137 (1164)
285 PF11471 Sugarporin_N: Maltopo 22.0 1.8E+02 0.0039 23.8 4.5 23 600-622 32-54 (60)
286 COG1196 Smc Chromosome segrega 21.8 1.9E+03 0.041 28.7 16.3 118 536-653 799-916 (1163)
287 KOG0976 Rho/Rac1-interacting s 21.6 6.5E+02 0.014 31.0 10.5 55 583-637 103-157 (1265)
288 PF12128 DUF3584: Protein of u 21.5 1.9E+03 0.042 28.8 18.8 54 604-657 356-413 (1201)
289 PF12004 DUF3498: Domain of un 21.5 31 0.00067 40.0 0.0 48 603-650 372-419 (495)
290 PF09755 DUF2046: Uncharacteri 21.4 1.1E+03 0.024 25.9 11.7 17 698-714 227-243 (310)
291 PF09730 BicD: Microtubule-ass 21.4 1.6E+03 0.034 27.7 15.7 30 737-766 263-295 (717)
292 PF15619 Lebercilin: Ciliary p 21.3 8.8E+02 0.019 24.7 10.7 30 588-617 120-149 (194)
293 PRK14127 cell division protein 21.2 2.2E+02 0.0048 26.2 5.4 19 604-622 41-59 (109)
294 PHA02047 phage lambda Rz1-like 21.1 6.1E+02 0.013 22.8 7.8 38 611-648 38-75 (101)
295 PF15070 GOLGA2L5: Putative go 20.8 6.5E+02 0.014 30.5 10.7 74 578-655 152-225 (617)
296 PF09738 DUF2051: Double stran 20.8 6.1E+02 0.013 27.7 9.6 29 630-658 145-173 (302)
297 PF14662 CCDC155: Coiled-coil 20.8 9E+02 0.019 24.6 11.8 6 611-616 106-111 (193)
298 PRK10636 putative ABC transpor 20.8 3.4E+02 0.0075 32.9 8.7 27 35-61 32-60 (638)
299 PRK01919 tatB sec-independent 20.7 8.4E+02 0.018 24.3 12.8 28 624-651 64-91 (169)
300 PRK10636 putative ABC transpor 20.7 4.9E+02 0.011 31.5 10.0 9 79-87 130-138 (638)
301 PF12844 HTH_19: Helix-turn-he 20.6 2.8E+02 0.006 22.0 5.5 56 28-93 3-59 (64)
302 PRK00846 hypothetical protein; 20.6 5.6E+02 0.012 22.1 9.6 16 598-613 11-26 (77)
303 PF10212 TTKRSYEDQ: Predicted 20.5 1.1E+03 0.023 27.8 11.9 20 402-421 281-300 (518)
304 PF14282 FlxA: FlxA-like prote 20.2 6.6E+02 0.014 22.8 8.8 21 587-607 20-40 (106)
305 PF10473 CENP-F_leu_zip: Leuci 20.2 7.9E+02 0.017 23.7 17.0 125 531-655 4-128 (140)
306 KOG4360 Uncharacterized coiled 20.1 1.4E+03 0.031 26.7 12.6 26 610-635 271-296 (596)
No 1
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=100.00 E-value=8.9e-131 Score=1157.42 Aligned_cols=542 Identities=41% Similarity=0.701 Sum_probs=499.0
Q ss_pred CCccCccccCCCccccCCcccHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhcCeeEEeeCCCCceeecCchHHHHH
Q 003826 2 SAKEYKYLRQSSCYSINGVDDAEQFRIVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNENHVEPVADEGLITV 81 (793)
Q Consensus 2 ~~~~y~yL~~s~~~~~~~~dD~~~f~~~~~Al~~lg~~~~~~~~if~ilaaILhLGNi~F~~~~~~~~~~~~~~~~l~~~ 81 (793)
.|++|.||++|+|..|+||||+++|+.|+.||++|||+.++|.+||+|||||||||||+|..+. ++.+.+.+.+.++.+
T Consensus 279 ~~~dY~Yl~~~~~~~I~gIdD~kefk~t~~AlktiGi~~eeq~~IF~iLAaILhiGNIef~~~r-~g~a~~~~~~~~~~~ 357 (1463)
T COG5022 279 NPKDYIYLSQGGCDKIDGIDDAKEFKITLDALKTIGIDEEEQDQIFKILAAILHIGNIEFKEDR-NGAAIFSDNSVLDKA 357 (1463)
T ss_pred ChHhhHhHhhcCCCcCCCcccHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHhhcceeeeecc-cchhhcCCchHHHHH
Confidence 5889999999999999999999999999999999999999999999999999999999998744 456788899999999
Q ss_pred HHHhCCCHHHHHHHHccceeeecCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCcceeEEeecC
Q 003826 82 AKLIGCDIGELKLALSTRKMRVGNDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIY 161 (793)
Q Consensus 82 a~LLGv~~~~L~~~L~~~~i~~~~e~i~~~lt~~qA~~~RdaLak~LY~~LF~wiV~~IN~~L~~~~~~~~~~IgILDI~ 161 (793)
|.|||||+..|.++|+.|.|++|+|.|.+++|..||...||+|||+||++||+|||.+||.+|..+.. ..+||||||||
T Consensus 358 c~LLgId~~~f~k~lvk~~ikt~~E~i~~~~n~~QA~~irdslAK~lY~~lFdwiV~rIN~sL~~~~~-~~~fIGVLDIy 436 (1463)
T COG5022 358 CYLLGIDPSLFVKWLVKRQIKTGGEWIVVPLNLEQALAIRDSLAKALYSNLFDWIVDRINKSLDHSAA-ASNFIGVLDIY 436 (1463)
T ss_pred HHHhCCCHHHHHHHHHHhHhhcCceEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccc-cccceeEEeec
Confidence 99999999999999999999999999999999999999999999999999999999999999987554 56899999999
Q ss_pred CCccCCCCChhHHHHHHhhHHHHHHHHHHhhHHHHHHHhhcCCcccccccCCchhHHHhhhc-CCCccccccccccCCCC
Q 003826 162 GFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEK-KPLGLLSLLDEESTFPN 240 (793)
Q Consensus 162 GFE~f~~NsfEQlcINyaNErLq~~f~~~~f~~eqeey~~EgI~~~~i~f~dN~~~ldlie~-kp~Gil~lLdee~~~p~ 240 (793)
|||+|+.|||||||||||||||||+||+|||++|||||.+|||+|++|+|.||++||||||+ .|.|||++|||||.+|.
T Consensus 437 GFEiFEkNSFEQlCINYtNEKLQQ~Fn~h~FklEQEeY~kE~IeW~~Idy~DnQ~~IDLIE~~~p~GIlslLDEE~~~p~ 516 (1463)
T COG5022 437 GFEIFEKNSFEQLCINYTNEKLQQFFNQHMFKLEQEEYVKEGIEWSFIDYFDNQPCIDLIEKKNPLGILSLLDEECVMPH 516 (1463)
T ss_pred chhhhccCcHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCcccccccccCcchhHHHhccCCCchHhhhcHHhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999997 47899999999999999
Q ss_pred CCcHHHHHHHHHHcC--CCCccccCC--CCCcEEEecCccccccccchhhhccccccHHHHHHHhhcCCch-HHHhhhcc
Q 003826 241 GTDLTFANKLKQHLN--SNPCFRGER--DKSFTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCSCHL-PQIFASNM 315 (793)
Q Consensus 241 ~tD~~f~~kl~~~~~--~~~~~~~~~--~~~F~I~HyaG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~~~~-~~lf~~~~ 315 (793)
|||++|..||.+.+. +++.|.++| +..|+|+||||+|+|+|.||++||+|+++.++++||..|++++ ..+|....
T Consensus 517 atd~s~~sKL~~~l~~~~~~~f~~~rf~~~~FvvkHYAgDVeY~veg~ldKNkD~l~~~ll~Ll~~StNe~vs~Lf~~~~ 596 (1463)
T COG5022 517 ATDESFTSKLAQRLNKNSNPKFKKSRFRDNKFVVKHYAGDVEYDVEGFLDKNKDPLNDDLLELLKASTNEFVSTLFDDEE 596 (1463)
T ss_pred CCchHHHHHHHHHhccccCccccccccCCCceEEEeecccceeeccchhhhCcchhhHHHHHHHhhccchHHHHhhhhhh
Confidence 999999999999876 567888775 5689999999999999999999999999999999999999986 56887322
Q ss_pred cccCCCCccCCCccCCCCCCCCccHHHHHHHHHHHHHHHHhccCCeeeeecCCCCCCCCCccchhHHHHHhhhhChhHHH
Q 003826 316 LSQSNKPVVGPLYKAGGADSQKLSVATKFKGQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVV 395 (793)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~tv~~~f~~~L~~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~v 395 (793)
... ..+.++|+++.|+.||+.||.+|++|+||||||||||..+.|+.||..+|++|||||||+|+|
T Consensus 597 ~~~--------------~K~~~pT~gs~~K~sl~~Lm~tl~sTqphyIRCIkPN~~K~p~~fD~~mVL~QLr~~GVlE~I 662 (1463)
T COG5022 597 NIE--------------SKGRFPTLGSRFKESLNSLMSTLNSTQPHYIRCIKPNEEKSPWTFDNQMVLSQLRCCGVLETI 662 (1463)
T ss_pred hcc--------------ccCCCCcHHHHHHHHHHHHHHHHHhcCCceeEeeCCCcccCccccchHHHHHHHHhcchhhhe
Confidence 111 123579999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCccChHHHHHHhhccccccCCC------CChHHHHHHHHHHcCCCCcceeecceeeeeeecccccccccccc
Q 003826 396 RISRSGFPTRMSHQKFARRYGFLLLESVAS------QDPLSVSVAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTRNR 469 (793)
Q Consensus 396 ri~r~Gyp~r~~~~~F~~RY~~L~~~~~~~------~d~~~~~~~il~~~~~~~~~~~vGkTkVFlr~~~~~~LE~~R~~ 469 (793)
||+|+|||.|++|++|+.||.+|.|...-. .|.+.+|..||..+.+|+..|++|.|||||+.+++..||++|..
T Consensus 663 RIsraGFP~R~~f~EFv~RY~IL~p~~~~~~~~~~~~~~~~~~~~IL~~~~id~~~YqiG~TKvFfKagvL~~LE~~Rd~ 742 (1463)
T COG5022 663 RISRAGFPSRWTFDEFVQRYRILSPSKSWTGEYTWKEDTKNAVKSILEELVIDSSKYQIGNTKVFFKAGVLAALEDMRDA 742 (1463)
T ss_pred eeccccCchhhhHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHhhcCChhheeccceeEEeeCchHHHHHHHHHH
Confidence 999999999999999999999999964321 26799999999999999999999999999999999999999998
Q ss_pred cch-hhHhhhhhhcccccchhhcccccchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHhhhhHHHH
Q 003826 470 TLH-GILRVQSCFRGHQARLCLKELRRGIVALQSFIRGEKIRKEYALVLQRHRAAVVIQRQIKSRVARQKLKNIKYSSIM 548 (793)
Q Consensus 470 ~l~-aa~~IQ~~~Rg~~~R~~~~~~r~a~i~IQs~~Rg~~aRr~~~~l~~~~~AAi~IQ~~~R~~~~R~~~~~~r~aai~ 548 (793)
.++ .++.||+.|||+..|++|......+..||...+|+..|+....-. ..++++.||..|+....|..|......++.
T Consensus 743 ~~~~~~~~iq~aiR~~~~rrr~~~~~k~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~r~~~~~~~~~i~~ 821 (1463)
T COG5022 743 KLDNIATRIQRAIRGRYLRRRYLQALKRIKKIQVIQHGFRLRRLVDYEL-KWRLFIKLQPLLSLLGSRKEYRSYLACIIK 821 (1463)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhcccch-HHHhHHHhhHHhHHHhhHHHHHHHHHHHHH
Confidence 885 567999999999999999999999999999999999887664333 346899999999999999999998888888
Q ss_pred HH-HHHhhHHHHh
Q 003826 549 IQ-SVIRGWLVRR 560 (793)
Q Consensus 549 IQ-s~~Rg~~aRr 560 (793)
+| ..+|....+.
T Consensus 822 lq~~i~~~~~~~~ 834 (1463)
T COG5022 822 LQKTIKREKKLRE 834 (1463)
T ss_pred HHHHHHHHHHHhH
Confidence 88 5666555554
No 2
>PTZ00014 myosin-A; Provisional
Probab=100.00 E-value=6.2e-125 Score=1113.26 Aligned_cols=493 Identities=27% Similarity=0.485 Sum_probs=435.6
Q ss_pred CCccCccccCCCccccCCcccHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhcCeeEEeeCC---CCceeecC--ch
Q 003826 2 SAKEYKYLRQSSCYSINGVDDAEQFRIVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDN---ENHVEPVA--DE 76 (793)
Q Consensus 2 ~~~~y~yL~~s~~~~~~~~dD~~~f~~~~~Al~~lg~~~~~~~~if~ilaaILhLGNi~F~~~~~---~~~~~~~~--~~ 76 (793)
++++|+||++ +|..++++||+++|+.|+.||++|||+++++..||+|||||||||||+|...+. ++.+.+.+ .+
T Consensus 308 ~~~~y~yL~~-~~~~~~~~dD~~~f~~~~~A~~~lg~s~~e~~~If~ilaaILhLGNi~F~~~~~~~~~~~~~i~~~~~~ 386 (821)
T PTZ00014 308 SLEEYKYINP-KCLDVPGIDDVKDFEEVMESFDSMGLSESQIEDIFSILSGVLLLGNVEIEGKEEGGLTDAAAISDESLE 386 (821)
T ss_pred ChHhccccCC-CCccCCCCchHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceeEeccccCCCCCceeccCCCHH
Confidence 5789999996 599999999999999999999999999999999999999999999999986532 23455544 45
Q ss_pred HHHHHHHHhCCCHHHHHHHHccceeeecCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCcceeE
Q 003826 77 GLITVAKLIGCDIGELKLALSTRKMRVGNDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSIS 156 (793)
Q Consensus 77 ~l~~~a~LLGv~~~~L~~~L~~~~i~~~~e~i~~~lt~~qA~~~RdaLak~LY~~LF~wiV~~IN~~L~~~~~~~~~~Ig 156 (793)
.+..||+||||++++|.++||++++.+|++.+++++|++||..+||+|||+||++||+|||.+||.+|.+.. ....+||
T Consensus 387 ~l~~~a~LLgv~~~~L~~~L~~~~~~~~~e~i~~~~~~~qA~~~rdalaK~lY~rLF~wiV~~IN~~l~~~~-~~~~~IG 465 (821)
T PTZ00014 387 VFNEACELLFLDYESLKKELTVKVTYAGNQKIEGPWSKDESEMLKDSLSKAVYEKLFLWIIRNLNATIEPPG-GFKVFIG 465 (821)
T ss_pred HHHHHHHHhCCCHHHHHHHhhceEEEeCCeeEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-ccCceEE
Confidence 899999999999999999999999999999999999999999999999999999999999999999998754 3467999
Q ss_pred EeecCCCccCCCCChhHHHHHHhhHHHHHHHHHHhhHHHHHHHhhcCCcccccccCCchhHHHhhhcCCCcccccccccc
Q 003826 157 ILDIYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEKKPLGLLSLLDEES 236 (793)
Q Consensus 157 ILDI~GFE~f~~NsfEQlcINyaNErLq~~f~~~~f~~eqeey~~EgI~~~~i~f~dN~~~ldlie~kp~Gil~lLdee~ 236 (793)
||||||||+|+.|||||||||||||+|||+||+|||+.||+||.+|||+|+.|+|.||++|||||+++|.|||++|||||
T Consensus 466 iLDI~GFE~f~~NSfEQLcINy~NEkLQq~F~~~vF~~EqeeY~~EgI~~~~i~f~dN~~~idLie~k~~GIl~lLDEec 545 (821)
T PTZ00014 466 MLDIFGFEVFKNNSLEQLFINITNEMLQKNFVDIVFERESKLYKDEGISTEELEYTSNESVIDLLCGKGKSVLSILEDQC 545 (821)
T ss_pred EEecccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCcHHHHHHHhcCCccHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcHHHHHHHHHHcCCCCccccCC---CCCcEEEecCccccccccchhhhccccccHHHHHHHhhcCCchH-HHhh
Q 003826 237 TFPNGTDLTFANKLKQHLNSNPCFRGER---DKSFTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCSCHLP-QIFA 312 (793)
Q Consensus 237 ~~p~~tD~~f~~kl~~~~~~~~~~~~~~---~~~F~I~HyaG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~~~~~-~lf~ 312 (793)
++|++||.+|++||++++++||+|..++ +..|+|+||||+|.|+++||++||+|+|+++++++|++|+++++ .+|.
T Consensus 546 ~~p~~tD~~f~~kl~~~~~~~~~f~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKNkD~l~~~~~~ll~~S~n~~i~~lf~ 625 (821)
T PTZ00014 546 LAPGGTDEKFVSSCNTNLKNNPKYKPAKVDSNKNFVIKHTIGDIQYCASGFLFKNKDVLRPELVEVVKASPNPLVRDLFE 625 (821)
T ss_pred CCCCCCHHHHHHHHHHHhcCCCCccCCCCCCCCceEEEEeceeeeeccCcHHHhccccchHHHHHHHHhCccHHHHHHhc
Confidence 9999999999999999999999998764 46899999999999999999999999999999999999999976 5785
Q ss_pred hcccccCCCCccCCCccCCCCCCCCccHHHHHHHHHHHHHHHHhccCCeeeeecCCCCCCCCCccchhHHHHHhhhhChh
Q 003826 313 SNMLSQSNKPVVGPLYKAGGADSQKLSVATKFKGQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVL 392 (793)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~f~~~L~~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvl 392 (793)
...... + ...+.+||+++|+.||+.||++|++|+||||||||||+.+.|+.||..+|++||||+|||
T Consensus 626 ~~~~~~-~------------~~~k~~tv~s~Fk~qL~~Lm~~L~~t~phfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvL 692 (821)
T PTZ00014 626 GVEVEK-G------------KLAKGQLIGSQFLNQLDSLMSLINSTEPHFIRCIKPNENKKPLDWNSSKVLIQLHSLSIL 692 (821)
T ss_pred cccccc-c------------cccCCCcHHHHHHHHHHHHHHHHhccCCeEEEEeCcCcccCccccchHhHHHHhhhhhHH
Confidence 432110 0 112347999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCccChHHHHHHhhccccccCCC--CChHHHHHHHHHHcCCCCcceeecceeeeeeeccccccccccccc
Q 003826 393 EVVRISRSGFPTRMSHQKFARRYGFLLLESVAS--QDPLSVSVAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTRNRT 470 (793)
Q Consensus 393 e~vri~r~Gyp~r~~~~~F~~RY~~L~~~~~~~--~d~~~~~~~il~~~~~~~~~~~vGkTkVFlr~~~~~~LE~~R~~~ 470 (793)
|+|||+|.|||+|++|.+|+.||++|.+...+. .|+++.|+.||..+++++++|++|+||||||.+++..||..|...
T Consensus 693 E~iri~r~Gyp~R~~f~~F~~rY~~L~~~~~~~~~~d~k~~~~~il~~~~l~~~~~~iGkTKVFlr~~~~~~Le~~~~~~ 772 (821)
T PTZ00014 693 EALQLRQLGFSYRRTFAEFLSQFKYLDLAVSNDSSLDPKEKAEKLLERSGLPKDSYAIGKTMVFLKKDAAKELTQIQREK 772 (821)
T ss_pred HHHHHHhcCCcccccHHHHHHHHHhcCcccccCCCCCHHHHHHHHHHHcCCCcccEEecCCeEEEcCcHHHHHHHHHHHH
Confidence 999999999999999999999999998876543 489999999999999999999999999999999999999887655
Q ss_pred ch----hhHhhhhhhcccccchhhcccccchhhhhhHHHHHHH
Q 003826 471 LH----GILRVQSCFRGHQARLCLKELRRGIVALQSFIRGEKI 509 (793)
Q Consensus 471 l~----aa~~IQ~~~Rg~~~R~~~~~~r~a~i~IQs~~Rg~~a 509 (793)
+. .+..||++||||++|++|++++.++++||++|||+++
T Consensus 773 ~~~~~~~~~~iq~~~r~~~~r~~~~~~~~~~~~iQ~~~R~~l~ 815 (821)
T PTZ00014 773 LAAWEPLVSVLEALILKIKKKRKVRKNIKSLVRIQAHLRRHLV 815 (821)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 2334444444444444444444444444444444333
No 3
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=100.00 E-value=5.2e-120 Score=1059.38 Aligned_cols=464 Identities=85% Similarity=1.312 Sum_probs=435.6
Q ss_pred CCccCccccCCCccccCCcccHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhcCeeEEeeCCCCceeecCchHHHHH
Q 003826 2 SAKEYKYLRQSSCYSINGVDDAEQFRIVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNENHVEPVADEGLITV 81 (793)
Q Consensus 2 ~~~~y~yL~~s~~~~~~~~dD~~~f~~~~~Al~~lg~~~~~~~~if~ilaaILhLGNi~F~~~~~~~~~~~~~~~~l~~~ 81 (793)
++.+|+||++++|..++++||+.+|+.|+.||+.|||+++++..||+|||||||||||+|...++++.+.+.+.+.+..|
T Consensus 214 ~~~~y~yL~~~~~~~~~~~dd~~~f~~~~~al~~lG~~~~e~~~I~~iLaaILhLGNi~F~~~~~~~~~~~~~~~~l~~~ 293 (677)
T cd01383 214 SASEYKYLKQSCCYSINGVDDAQRFHTLVEALDIVHISKEDQENVFAMLAAVLWLGNVSFTVIDNENHVEPVADEALSTA 293 (677)
T ss_pred CHHHCceecCCCcccCCCccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceEEEecCCCcccccCChHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999998777667778888999999
Q ss_pred HHHhCCCHHHHHHHHccceeeecCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCcceeEEeecC
Q 003826 82 AKLIGCDIGELKLALSTRKMRVGNDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIY 161 (793)
Q Consensus 82 a~LLGv~~~~L~~~L~~~~i~~~~e~i~~~lt~~qA~~~RdaLak~LY~~LF~wiV~~IN~~L~~~~~~~~~~IgILDI~ 161 (793)
|.||||++++|.++||++++.++|+.+.++++++||.++||+|||+||++||+|||.+||.+|.++...+..+|||||||
T Consensus 294 a~LLgv~~~~L~~~l~~~~~~~~~e~~~~~~~~~qa~~~rdalak~lY~~lF~wiV~~IN~~l~~~~~~~~~~IgiLDI~ 373 (677)
T cd01383 294 AKLIGCNIEDLMLALSTRKMHVNNDNIVQKLTLQQAIDARDALAKSIYASLFDWLVEQINKSLEVGKRRTGRSISILDIY 373 (677)
T ss_pred HHHhCCCHHHHHHHhhhcEEEeCCceEeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccceEEEeecc
Confidence 99999999999999999999999999999999999999999999999999999999999999998765567899999999
Q ss_pred CCccCCCCChhHHHHHHhhHHHHHHHHHHhhHHHHHHHhhcCCcccccccCCchhHHHhhhcCCCccccccccccCCCCC
Q 003826 162 GFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEKKPLGLLSLLDEESTFPNG 241 (793)
Q Consensus 162 GFE~f~~NsfEQlcINyaNErLq~~f~~~~f~~eqeey~~EgI~~~~i~f~dN~~~ldlie~kp~Gil~lLdee~~~p~~ 241 (793)
|||+|+.|||||||||||||+||++|++++|+.||++|.+|||+|++|+|.||++|||||+++|.|||++|||||++|++
T Consensus 374 GFE~f~~NsfEQLcINyaNEkLQ~~f~~~vF~~EqeeY~~EgI~~~~i~f~dN~~~ldLie~kp~Gil~lLdee~~~p~~ 453 (677)
T cd01383 374 GFESFDKNSFEQFCINYANERLQQHFNRHLFKLEQEEYEEDGIDWTKVEFEDNQECLDLFEKKPLGLLSLLDEESTFPNA 453 (677)
T ss_pred ccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCcHHHHHHHhcCCccHHHHhHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHcCCCCccccCCCCCcEEEecCccccccccchhhhccccccHHHHHHHhhcCCchHHHhhhcccccCCC
Q 003826 242 TDLTFANKLKQHLNSNPCFRGERDKSFTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCSCHLPQIFASNMLSQSNK 321 (793)
Q Consensus 242 tD~~f~~kl~~~~~~~~~~~~~~~~~F~I~HyaG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~~~~~~lf~~~~~~~~~~ 321 (793)
||.+|++||++++++||+|..+++..|+|+||||+|+|+++||++||+|.++.+++++|++|++++..+|...+...+
T Consensus 454 tD~~f~~kl~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~v~gfleKNrD~l~~~~~~ll~~S~~~~~~~f~~~~~~~s-- 531 (677)
T cd01383 454 TDLTFANKLKQHLKTNSCFRGERGGAFTVRHYAGEVTYDTTGFLEKNRDLLHSDSIQLLSSCKCQLPQLFASSMLIQS-- 531 (677)
T ss_pred CHHHHHHHHHHHhCCCCCCCCCCCCceEEEEeccceeecCCChHHhccccccHHHHHHHHhCchHHHHHHHhhhhccc--
Confidence 999999999999999999998888899999999999999999999999999999999999999999999976543222
Q ss_pred CccCCCccCCCCCCCCccHHHHHHHHHHHHHHHHhccCCeeeeecCCCCCCCCCccchhHHHHHhhhhChhHHHHHHhcC
Q 003826 322 PVVGPLYKAGGADSQKLSVATKFKGQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSG 401 (793)
Q Consensus 322 ~~~~~~~~~~~~~~~~~tv~~~f~~~L~~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~vri~r~G 401 (793)
+..++..+.++...+..||+++|+.||+.||+.|++|+||||||||||+.+.|+.||..+|++||||+||||+|+|+|.|
T Consensus 532 ~~~~~~~~~~~~~~~~~tv~~~fk~qL~~L~~~L~~t~phfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~G 611 (677)
T cd01383 532 PVVGPLYVASAADSQKLSVGTKFKGQLFKLMQQLENTTPHFIRCIKPNNKQLPGIYEQGLVLQQLRCCGVLEVVRISRSG 611 (677)
T ss_pred cccccccccccccccCcchHHHHHHHHHHHHHHHhCCCCeEEEEECcccccCcCccchhhhHHHhhhccHHHHHHHHhcC
Confidence 11122122223345678999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccChHHHHHHhhccccccCCCCChHHHHHHHHHHcCCCCcceeecceeeeeeecccccccccc
Q 003826 402 FPTRMSHQKFARRYGFLLLESVASQDPLSVSVAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTR 467 (793)
Q Consensus 402 yp~r~~~~~F~~RY~~L~~~~~~~~d~~~~~~~il~~~~~~~~~~~vGkTkVFlr~~~~~~LE~~R 467 (793)
||+|++|.+|+.||++|++..+...|++..|+.+|+.+++++++|++|+||||||.+++..||+.|
T Consensus 612 yp~R~~~~~F~~rY~~L~~~~~~~~~~~~~~~~il~~~~~~~~~~~~GkTKVFlr~~~~~~LE~~r 677 (677)
T cd01383 612 YPTRMTHQEFARRYGFLLLENIASQDPLSVSVAILQQFNILPEMYQVGYTKLFFRTGQIGALEDTR 677 (677)
T ss_pred CCccccHHHHHHHHHHhCccccCCCCHHHHHHHHHHhcCCCcccEEeccceEEecCcHHHHHhhcC
Confidence 999999999999999999988777799999999999999999999999999999999999999875
No 4
>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=100.00 E-value=2.3e-116 Score=962.70 Aligned_cols=537 Identities=32% Similarity=0.563 Sum_probs=482.0
Q ss_pred CCccCccccCCCccccCCcccHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhcCeeEEeeCCCCceeecCchHHHHH
Q 003826 2 SAKEYKYLRQSSCYSINGVDDAEQFRIVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNENHVEPVADEGLITV 81 (793)
Q Consensus 2 ~~~~y~yL~~s~~~~~~~~dD~~~f~~~~~Al~~lg~~~~~~~~if~ilaaILhLGNi~F~~~~~~~~~~~~~~~~l~~~ 81 (793)
+|..|.||+++ |..+.+++|+.+|+.+..||.+|||+++|++++|+|+|||||||||.|.+.++ ..-+++...+..+
T Consensus 223 ~~~~Y~ylnqg-~~~v~sinD~~dfk~V~~Am~vIgFs~eEVe~v~~iiAavLhLGNv~f~~~ed--~~~~~~~~~l~~~ 299 (1001)
T KOG0164|consen 223 NPQSYNYLNQG-SAKVSSINDASDFKAVQKAMRVIGFSEEEVESVLSIIAAVLHLGNVEFADNED--SSGIVNGAQLKYI 299 (1001)
T ss_pred Ccchhhhhhhh-hhhhcccccHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccceEEeecCc--ccccchhHHHHHH
Confidence 57899999997 88999999999999999999999999999999999999999999999986543 3445566899999
Q ss_pred HHHhCCCHHHHHHHHccceeeecCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCC----CCcceeEE
Q 003826 82 AKLIGCDIGELKLALSTRKMRVGNDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKR----RTGRSISI 157 (793)
Q Consensus 82 a~LLGv~~~~L~~~L~~~~i~~~~e~i~~~lt~~qA~~~RdaLak~LY~~LF~wiV~~IN~~L~~~~~----~~~~~IgI 157 (793)
|+||++.+++|.++||+|++-++||.+.++++++||.++||||||++|+|||+|||.+||.+|.+... .....||+
T Consensus 300 aell~v~~del~~aL~~Rtvaa~~e~v~k~hn~~qA~YaRDAlAKaiY~RlF~Wiv~rIn~~i~~~~~~~~~~~~~Vigv 379 (1001)
T KOG0164|consen 300 AELLSVTGDELERALTSRTVAAGGEIVLKQHNVEQASYARDALAKAIYSRLFTWIVNRINRSIEVKGVITLRKGNTVIGV 379 (1001)
T ss_pred HHHHcCCHHHHHHHHHHHHHHhccchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhheecccccccccCceEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999987532 22368999
Q ss_pred eecCCCccCCCCChhHHHHHHhhHHHHHHHHHHhhHHHHHHHhhcCCcccccccCCchhHHHhhhcCCCccccccccccC
Q 003826 158 LDIYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEKKPLGLLSLLDEEST 237 (793)
Q Consensus 158 LDI~GFE~f~~NsfEQlcINyaNErLq~~f~~~~f~~eqeey~~EgI~~~~i~f~dN~~~ldlie~kp~Gil~lLdee~~ 237 (793)
|||||||+|+.|||||||||||||||||.|++-+++.|||||+.|||+|++|+|.+|..++||+|.+..||++||||+|+
T Consensus 380 ldiygfeif~~NSFEQfcINYCNEKLQQlFIel~LKqEQEEY~rEgI~W~~i~YFnN~iIcdLvE~~~~GIlailDe~Cl 459 (1001)
T KOG0164|consen 380 LDIYGFEIFQDNSFEQFCINYCNEKLQQLFIELVLKQEQEEYEREGIEWTHIDYFNNKIICDLVEQPHKGILAILDEACL 459 (1001)
T ss_pred EEeeeEEeecCCcHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcCCCceehhhcCCceeeehhccCccchhhhhhHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC-CCcHHHHHHHHHHcCCCCccccCC---------CCCcEEEecCccccccccchhhhccccccHHHHHHHhhcCCch
Q 003826 238 FPN-GTDLTFANKLKQHLNSNPCFRGER---------DKSFTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCSCHL 307 (793)
Q Consensus 238 ~p~-~tD~~f~~kl~~~~~~~~~~~~~~---------~~~F~I~HyaG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~~~~ 307 (793)
.|. .||.+|+++|.+++++|++|.+.. -..|.|.||||+|+|+|.||++||+|.|..|+-.+|..|++++
T Consensus 460 ~~G~vtD~tfL~~l~~~~~~H~Hy~sr~~~~~dksl~~~~Fri~HYAG~V~YsV~gFidKN~D~Lf~dlk~~m~~s~~~~ 539 (1001)
T KOG0164|consen 460 RPGTVTDETFLEKLNQKLKKHPHYTSRKLKQTDKSLGFSDFRITHYAGDVTYSVEGFIDKNNDLLFQDLKRLMYNSKNPL 539 (1001)
T ss_pred CCCccchHHHHHHHHHHhhhCCcchhhhccccccccCccceeEEEeccceEEEEEeeeccCccHHHHHHHHHHHhcCCch
Confidence 985 699999999999999999996531 2589999999999999999999999999999999999999996
Q ss_pred H-HHhhhcccccCCCCccCCCccCCCCCCCCccHHHHHHHHHHHHHHHHhccCCeeeeecCCCCCCCCCccchhHHHHHh
Q 003826 308 P-QIFASNMLSQSNKPVVGPLYKAGGADSQKLSVATKFKGQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQL 386 (793)
Q Consensus 308 ~-~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~f~~~L~~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QL 386 (793)
+ .+|+......... ...++|++++|+.|+..||..|.+-+|+||||||||+.+.|+.||...|.+|+
T Consensus 540 l~~~fpeG~~~~~~~------------tkRP~Tagt~Fk~Sm~~Lv~nL~sKeP~YvRcikPNe~k~~~~fd~e~~~hqv 607 (1001)
T KOG0164|consen 540 LKSLFPEGNPDIAEV------------TKRPPTAGTLFKNSMAALVKNLASKEPNYVRCIKPNEHKQPGQFDEERVRHQV 607 (1001)
T ss_pred HHHhCCCCChhHHhh------------hcCCCcHHHHHHHHHHHHHHHHhhcCCCeEEeeccccccCccccchhhhHHHH
Confidence 5 5775322111100 12358999999999999999999999999999999999999999999999999
Q ss_pred hhhChhHHHHHHhcCCCCccChHHHHHHhhccccccCCCC---ChHHHHHHHHHHcCCCCcceeecceeeeeeec-cccc
Q 003826 387 RCCGVLEVVRISRSGFPTRMSHQKFARRYGFLLLESVASQ---DPLSVSVAILHQFNILPEMYQVGYTKLFFRAG-QIGM 462 (793)
Q Consensus 387 r~~gvle~vri~r~Gyp~r~~~~~F~~RY~~L~~~~~~~~---d~~~~~~~il~~~~~~~~~~~vGkTkVFlr~~-~~~~ 462 (793)
+|+|++|.+|++|+||.+|.+|+.|+.||+++++.+||.+ +.++.|..+++..++. +++.+|+||||+|.. .+..
T Consensus 608 ~ylGLleNvrVrrAgfahRq~Y~~FL~RYKmi~~~TWPn~~~g~dkd~v~vL~e~~g~~-~d~a~G~TKIFIRsPrTLF~ 686 (1001)
T KOG0164|consen 608 RYLGLLENVRVRRAGFAHRQPYERFLLRYKMICESTWPNWRGGSDKDGVKVLLEHLGLA-GDVAFGRTKIFIRSPRTLFA 686 (1001)
T ss_pred HHHHHHhhhhhhhcccccccchHHHHHHHHhhCcccCCCCCCCCchhHHHHHHHHhccc-hhhhcCceeEEEecchhHhh
Confidence 9999999999999999999999999999999999999965 5678899999999986 899999999999985 5899
Q ss_pred ccccccccchhh-HhhhhhhcccccchhhcccccchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHh
Q 003826 463 LEDTRNRTLHGI-LRVQSCFRGHQARLCLKELRRGIVALQSFIRGEKIRKEYALVLQRHRAAVVIQRQIKSRVARQKLKN 541 (793)
Q Consensus 463 LE~~R~~~l~aa-~~IQ~~~Rg~~~R~~~~~~r~a~i~IQs~~Rg~~aRr~~~~l~~~~~AAi~IQ~~~R~~~~R~~~~~ 541 (793)
||+.|.+++..+ +.||+.|||+++|.+|++++.++++|+ |||.+.. ..++..||..+|++..++.|.+
T Consensus 687 lEe~r~~~l~~lvtllQK~~RG~~~R~ry~rmka~~~ii~-wyR~~K~----------ks~v~el~~~~rg~k~~r~ygk 755 (1001)
T KOG0164|consen 687 LEEQRAERLPSLVTLLQKAWRGWLARQRYRRMKASATIIR-WYRRYKL----------KSYVQELQRRFRGAKQMRDYGK 755 (1001)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH----------HHHHHHHHHHHHhhhhccccCC
Confidence 999999988664 589999999999999999999999998 8874332 2467788999999999998865
Q ss_pred ----------hhhHHHHHHHHHhhHHHHhhhhhh
Q 003826 542 ----------IKYSSIMIQSVIRGWLVRRCSGDI 565 (793)
Q Consensus 542 ----------~r~aai~IQs~~Rg~~aRr~~~~l 565 (793)
++.+.-.+|..+-.|.+++..+.+
T Consensus 756 ~~~WP~pP~~Lr~~~~~L~~lf~rwra~~~~~~i 789 (1001)
T KOG0164|consen 756 SIRWPAPPLVLREFEELLRELFIRWRAWQILKSI 789 (1001)
T ss_pred CCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 355667777777777777766544
No 5
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=100.00 E-value=1.4e-115 Score=1022.78 Aligned_cols=454 Identities=38% Similarity=0.663 Sum_probs=423.1
Q ss_pred CCccCccccCCCccccCCcccHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhcCeeEEeeCC--CCceeecCchHHH
Q 003826 2 SAKEYKYLRQSSCYSINGVDDAEQFRIVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDN--ENHVEPVADEGLI 79 (793)
Q Consensus 2 ~~~~y~yL~~s~~~~~~~~dD~~~f~~~~~Al~~lg~~~~~~~~if~ilaaILhLGNi~F~~~~~--~~~~~~~~~~~l~ 79 (793)
++.+|+||++++|..++++||+++|+.++.||++|||+++++..||+|||||||||||+|...+. .+.+.+.+.+.++
T Consensus 209 ~~~~y~yL~~~~~~~~~~~dD~~~f~~~~~al~~lG~~~~e~~~i~~ilaaILhLGni~F~~~~~~~~~~~~i~~~~~l~ 288 (671)
T cd01381 209 EASDYHYLAQGGCITCEGRDDAKDFADIRSAMKVLMFTDQEIWEIFKLLAAILHIGNLRFEATEVDNLAACEVDDTPNLQ 288 (671)
T ss_pred ChhhceeecCCCCccCCCccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceEEeeccCCCCCceeeCChHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999987632 3568889999999
Q ss_pred HHHHHhCCCHHHHHHHHccceeeecCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCcceeEEee
Q 003826 80 TVAKLIGCDIGELKLALSTRKMRVGNDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILD 159 (793)
Q Consensus 80 ~~a~LLGv~~~~L~~~L~~~~i~~~~e~i~~~lt~~qA~~~RdaLak~LY~~LF~wiV~~IN~~L~~~~~~~~~~IgILD 159 (793)
.||.||||++++|.++||++++.++|+.+.++++++||.++||+|||+||++||+|||.+||.+|.++......+|||||
T Consensus 289 ~~a~LLgv~~~~L~~~lt~~~~~~~~e~i~~~~~~~qA~~~rdalak~lY~~lF~wiV~~IN~~l~~~~~~~~~~IgiLD 368 (671)
T cd01381 289 RVAQLLGVPIQDLMDALTSRTIFTRGETVVTPLSREQAVDVRDAFVKGIYGRLFVWIVRKINAAIYKPVQQSRNSIGVLD 368 (671)
T ss_pred HHHHHhCCCHHHHhhhhceEEEEeCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccceEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999865444667999999
Q ss_pred cCCCccCCCCChhHHHHHHhhHHHHHHHHHHhhHHHHHHHhhcCCcccccccCCchhHHHhhhcCCCccccccccccCCC
Q 003826 160 IYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEKKPLGLLSLLDEESTFP 239 (793)
Q Consensus 160 I~GFE~f~~NsfEQlcINyaNErLq~~f~~~~f~~eqeey~~EgI~~~~i~f~dN~~~ldlie~kp~Gil~lLdee~~~p 239 (793)
|||||+|+.|||||||||||||+||++|++++|+.||++|.+|||+|++|+|.||++|||||+++|.|||++|||||++|
T Consensus 369 IfGFE~f~~NsfEQLcINy~NEkLQ~~f~~~vf~~eq~eY~~EgI~~~~i~f~dN~~~ldLie~kp~Gil~lLDee~~~p 448 (671)
T cd01381 369 IFGFENFDVNSFEQLCINFANENLQQFFVQHIFKLEQEEYNLEHINWQHIEFVDNQDALDLIAIKPLNIMSLIDEESKFP 448 (671)
T ss_pred cCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccCccCcHHHHHHHhcCCCCcceechHhhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHcCCCCccccCC---CCCcEEEecCccccccccchhhhccccccHHHHHHHhhcCCchH-HHhhhcc
Q 003826 240 NGTDLTFANKLKQHLNSNPCFRGER---DKSFTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCSCHLP-QIFASNM 315 (793)
Q Consensus 240 ~~tD~~f~~kl~~~~~~~~~~~~~~---~~~F~I~HyaG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~~~~~-~lf~~~~ 315 (793)
+|||.+|++||++.+++|++|..++ +..|+|+||||+|+|+++||++||+|.++++++++|++|+++++ .+|....
T Consensus 449 ~~td~~f~~kl~~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~n~~i~~lf~~~~ 528 (671)
T cd01381 449 KGTDQTMLEKLHSQHGLHSNYLKPKSTQETQFGINHFAGVVFYDTRGFLEKNRDTFSGDLSQLVQSSKNKFLKQIFQADV 528 (671)
T ss_pred CCCHHHHHHHHHHHhcCCCCcccCCCCCCCceEEEEecceEeeccCCHHHhccchhhHHHHHHHHhChHHHHHHHhcccc
Confidence 9999999999999999999997653 46899999999999999999999999999999999999999976 5776432
Q ss_pred cccCCCCccCCCccCCCCCCCCccHHHHHHHHHHHHHHHHhccCCeeeeecCCCCCCCCCccchhHHHHHhhhhChhHHH
Q 003826 316 LSQSNKPVVGPLYKAGGADSQKLSVATKFKGQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVV 395 (793)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~tv~~~f~~~L~~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~v 395 (793)
... .+...+.+||+++|+.||+.||++|++|+||||||||||+.+.|+.||..+|++||||+||||+|
T Consensus 529 ~~~------------~~~~~k~~tv~~~fk~qL~~L~~~L~~t~phfIRCIKPN~~k~~~~fd~~~V~~QLr~~Gvle~i 596 (671)
T cd01381 529 EMG------------AETRKKKPTLSSQFRRSLDLLMRTLSSCQPFFIRCIKPNEYKEPMVFDRELCVRQLRYSGMMETI 596 (671)
T ss_pred ccc------------ccccccCCcHHHHHHHHHHHHHHHHhcCCCeEEEEeCcchhhccCccChHHHHHHHHhcchHHHH
Confidence 100 01123458999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCccChHHHHHHhhccccccCCC---CChHHHHHHHHHHcCCCCcceeecceeeeeeecccccccccc
Q 003826 396 RISRSGFPTRMSHQKFARRYGFLLLESVAS---QDPLSVSVAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTR 467 (793)
Q Consensus 396 ri~r~Gyp~r~~~~~F~~RY~~L~~~~~~~---~d~~~~~~~il~~~~~~~~~~~vGkTkVFlr~~~~~~LE~~R 467 (793)
+|+|.|||+|++|.+|+.||++|++..++. .++++.|..+++.+.+++++|++|+||||||.+++..||+.|
T Consensus 597 ri~r~Gyp~r~~~~~F~~rY~~L~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~G~TkVFlr~~~~~~LE~~r 671 (671)
T cd01381 597 RIRRAGYPIRHTFREFVERYRVLVPGVKPAYKQDCLAGLAQRICEAVLLADDDWQLGKTKVFLKDHHDLLLEQER 671 (671)
T ss_pred HHHHcCcCceecHHHHHHHHHHhCcccccccccccHHHHHHHHHHHcCCCcccEEeccceEEECcCHHHHHhhcC
Confidence 999999999999999999999999987653 477889999999999999999999999999999999999875
No 6
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=100.00 E-value=1.9e-115 Score=1025.94 Aligned_cols=465 Identities=45% Similarity=0.760 Sum_probs=423.0
Q ss_pred CCccCccccCCCccccCCcccHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhcCeeEEeeCCCCceeecCchHHHHH
Q 003826 2 SAKEYKYLRQSSCYSINGVDDAEQFRIVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNENHVEPVADEGLITV 81 (793)
Q Consensus 2 ~~~~y~yL~~s~~~~~~~~dD~~~f~~~~~Al~~lg~~~~~~~~if~ilaaILhLGNi~F~~~~~~~~~~~~~~~~l~~~ 81 (793)
++.+|+||++++|..++++||+.+|+.|+.||++|||+++++..||+|||||||||||+|...++++.+...+.+.++.|
T Consensus 215 ~~~~y~yl~~~~~~~~~~~~d~~~f~~~~~al~~lg~s~~e~~~I~~iLaaILhLGni~F~~~~~~~~~~~~~~~~l~~~ 294 (691)
T cd01380 215 HADKFNYLNQGGAPTIEGVDDAEDFNATVQALTLLGISEEQQMDIFKLLAALLHLGNIEIEATRNDSSSISPKDENLQIA 294 (691)
T ss_pred CHHHCccccCCCCccCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccceeeeccCCccceecCChHHHHHH
Confidence 35789999999999999999999999999999999999999999999999999999999997665543444567799999
Q ss_pred HHHhCCCHHHHHHHHccceeeecCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCC--CCCcceeEEee
Q 003826 82 AKLIGCDIGELKLALSTRKMRVGNDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGK--RRTGRSISILD 159 (793)
Q Consensus 82 a~LLGv~~~~L~~~L~~~~i~~~~e~i~~~lt~~qA~~~RdaLak~LY~~LF~wiV~~IN~~L~~~~--~~~~~~IgILD 159 (793)
|.||||++++|.++|+++++.+++|.+++++|++||.++||+|||+||++||+|||.+||.+|.+.. .....+|||||
T Consensus 295 a~LLgv~~~~L~~~l~~~~~~~~~e~i~~~~~~~qA~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~~~~IgiLD 374 (691)
T cd01380 295 CELLGVDASDLRKWLVKRQIVTRSEKIVKPLTKEQAIVARDALAKHIYSKLFDWIVDVINKSLNTGEVKKKQTSFIGVLD 374 (691)
T ss_pred HHHhCCCHHHHHHHHHhCEEEECCeeEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCcccCCccceEEEEe
Confidence 9999999999999999999999999999999999999999999999999999999999999998753 34567999999
Q ss_pred cCCCccCCCCChhHHHHHHhhHHHHHHHHHHhhHHHHHHHhhcCCcccccccCCchhHHHhhhcCCCccccccccccCCC
Q 003826 160 IYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEKKPLGLLSLLDEESTFP 239 (793)
Q Consensus 160 I~GFE~f~~NsfEQlcINyaNErLq~~f~~~~f~~eqeey~~EgI~~~~i~f~dN~~~ldlie~kp~Gil~lLdee~~~p 239 (793)
|||||+|+.|||||||||||||+||++|++++|+.||++|.+|||+|+.|+|.||++|||||++ |.|||++|||||++|
T Consensus 375 I~GFE~f~~NsfEQLcINyaNEkLQ~~f~~~iF~~eq~~Y~~EgI~~~~i~f~DN~~~ldLie~-~~Gil~lLdee~~~p 453 (691)
T cd01380 375 IYGFETFEKNSFEQFCINYANEKLQQQFNQHVFKLEQEEYLKEGIEWTFIDFYDNQPCIDLIES-KLGILSLLDEECRLP 453 (691)
T ss_pred cCcccccCCCCHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCCCccccCCCCHHHHHHHhC-CCchHHHhHHhhcCC
Confidence 9999999999999999999999999999999999999999999999999999999999999997 599999999999999
Q ss_pred CCCcHHHHHHHHHHcC--CCCccccCC--CCCcEEEecCccccccccchhhhccccccHHHHHHHhhcCCchH-HHhhhc
Q 003826 240 NGTDLTFANKLKQHLN--SNPCFRGER--DKSFTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCSCHLP-QIFASN 314 (793)
Q Consensus 240 ~~tD~~f~~kl~~~~~--~~~~~~~~~--~~~F~I~HyaG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~~~~~-~lf~~~ 314 (793)
++||.+|++||++.++ +||+|..++ +..|+|+||||+|+|+++||++||+|.++.+++++|++|+++++ .+|...
T Consensus 454 ~~td~~f~~kl~~~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~v~gfleKNrD~l~~~~~~ll~~S~~~~i~~lf~~~ 533 (691)
T cd01380 454 KGSDESWAQKLYNKLPKKKNPHFEKPRFGQTSFTVKHFADDVEYDVDGFLEKNRDTVSDEHLDVLKASKNPFLKEVLDAA 533 (691)
T ss_pred CCChHHHHHHHHHHhcccCCCCccCCCCCCCeeEEEEccCCcccccccHHHhccccccHHHHHHHHhCccHHHHHHhhhh
Confidence 9999999999999998 899998765 46899999999999999999999999999999999999999975 577654
Q ss_pred ccccCCCCc---cCC-CccCCCCCCCCccHHHHHHHHHHHHHHHHhccCCeeeeecCCCCCCCCCccchhHHHHHhhhhC
Q 003826 315 MLSQSNKPV---VGP-LYKAGGADSQKLSVATKFKGQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCG 390 (793)
Q Consensus 315 ~~~~~~~~~---~~~-~~~~~~~~~~~~tv~~~f~~~L~~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~g 390 (793)
....+.... .++ .+..++...+.+||+++|+.||+.||++|++|+||||||||||+.+.|+.||..+|++||||+|
T Consensus 534 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~fk~qL~~L~~~L~~t~phfIRCIKPN~~k~~~~fd~~~V~~QLr~~G 613 (691)
T cd01380 534 ELASSSSSSAKSKPAAKRPPKRAKQHKPTVGSQFKSSLIELMSTLNSTNPHYIRCIKPNDEKKPFKFEPKRVLQQLRACG 613 (691)
T ss_pred cccccccccccccccccccccccccCCCcHHHHHHHHHHHHHHHHhccCCeEEEEeCCCcccCcCccCHHHHHHHHHHhc
Confidence 321111000 000 0111223346789999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhcCCCCccChHHHHHHhhccccccC-CCCChHHHHHHHHHHcCCCCcceeecceeeeeeecccccccccc
Q 003826 391 VLEVVRISRSGFPTRMSHQKFARRYGFLLLESV-ASQDPLSVSVAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTR 467 (793)
Q Consensus 391 vle~vri~r~Gyp~r~~~~~F~~RY~~L~~~~~-~~~d~~~~~~~il~~~~~~~~~~~vGkTkVFlr~~~~~~LE~~R 467 (793)
|||+|||+|.|||+|++|.+|+.||++|+|... ...|+++.|+.||+.+.+++.+|++|+||||||.+++..||+.|
T Consensus 614 vlE~iri~r~Gyp~R~~~~~F~~ry~~L~~~~~~~~~~~k~~~~~iL~~~~~~~~~~~~G~tkVFlk~~~~~~LE~~R 691 (691)
T cd01380 614 VLETIRISAAGFPSRWTYEEFAQRYRVLVPSKELWKSDPKQLCENILTKVIEDEDKYQFGKTKIFFRAGQVAFLEKLR 691 (691)
T ss_pred hHHHHHHHhccCCccccHHHHHHHHHHhCccccccCCCHHHHHHHHHHHhCCCcccEEecCceEEECcCHHHHHhhcC
Confidence 999999999999999999999999999999876 34589999999999999999999999999999999999999876
No 7
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=100.00 E-value=1.4e-115 Score=1021.54 Aligned_cols=453 Identities=44% Similarity=0.758 Sum_probs=419.8
Q ss_pred CCccCccccCCCccccCCcccHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhcCeeEEeeCCCCceeecC---chHH
Q 003826 2 SAKEYKYLRQSSCYSINGVDDAEQFRIVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNENHVEPVA---DEGL 78 (793)
Q Consensus 2 ~~~~y~yL~~s~~~~~~~~dD~~~f~~~~~Al~~lg~~~~~~~~if~ilaaILhLGNi~F~~~~~~~~~~~~~---~~~l 78 (793)
++.+|+||++++|..++++||+++|++|+.||+.|||+++++..||+|||||||||||+|...++.+.+.+.+ .+.+
T Consensus 214 ~~~~y~yL~~~~~~~~~~~~D~~~f~~~~~al~~lG~~~~e~~~I~~iLaaILhLGni~F~~~~~~~~~~~~~~~~~~~l 293 (674)
T cd01384 214 DPKEFHYLNQSNCFELDGVDDAEEYLATRRAMDVVGISEEEQDAIFRVVAAILHLGNIEFAKGEEIDSSVLKDEKSEFHL 293 (674)
T ss_pred ChHhCccccCCCCccccccchHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccceeeeccCCCCcccccCcccHHHH
Confidence 5789999999999999999999999999999999999999999999999999999999998765444444433 4789
Q ss_pred HHHHHHhCCCHHHHHHHHccceeeecCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCcceeEEe
Q 003826 79 ITVAKLIGCDIGELKLALSTRKMRVGNDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISIL 158 (793)
Q Consensus 79 ~~~a~LLGv~~~~L~~~L~~~~i~~~~e~i~~~lt~~qA~~~RdaLak~LY~~LF~wiV~~IN~~L~~~~~~~~~~IgIL 158 (793)
..||.||||++++|.++|+++++.++++.+.+++++++|.++||+|||+||++||+|||.+||.+|.+.. ....+||||
T Consensus 294 ~~~a~LLgv~~~~L~~~L~~~~~~~~~e~i~~~~~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~-~~~~~IgiL 372 (674)
T cd01384 294 KTAAELLMCDEKALEDALCKRVMVTPEEVITKPLDPDSAELSRDALAKTIYSRLFDWLVNKINSSIGQDP-DSKSLIGVL 372 (674)
T ss_pred HHHHHHhCCCHHHHHHHhcccEEEeCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCeEEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999998753 346799999
Q ss_pred ecCCCccCCCCChhHHHHHHhhHHHHHHHHHHhhHHHHHHHhhcCCcccccccCCchhHHHhhhcCCCccccccccccCC
Q 003826 159 DIYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEKKPLGLLSLLDEESTF 238 (793)
Q Consensus 159 DI~GFE~f~~NsfEQlcINyaNErLq~~f~~~~f~~eqeey~~EgI~~~~i~f~dN~~~ldlie~kp~Gil~lLdee~~~ 238 (793)
||||||+|+.|||||||||||||+||++|++++|+.||++|.+|||+|+.|+|.||++|||||+++|.|||++|||||++
T Consensus 373 DI~GFE~f~~NsfEQLcINyaNEkLQ~~f~~~if~~eq~eY~~EgI~~~~i~~~DN~~~ldLie~~~~Gil~lLdee~~~ 452 (674)
T cd01384 373 DIYGFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYTKEEIDWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMF 452 (674)
T ss_pred ecccccccCcCCHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccCCChHHHHHHHhcCCccHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcHHHHHHHHHHcCCCCccccCC--CCCcEEEecCccccccccchhhhccccccHHHHHHHhhcCCchH-HHhhhcc
Q 003826 239 PNGTDLTFANKLKQHLNSNPCFRGER--DKSFTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCSCHLP-QIFASNM 315 (793)
Q Consensus 239 p~~tD~~f~~kl~~~~~~~~~~~~~~--~~~F~I~HyaG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~~~~~-~lf~~~~ 315 (793)
|++||.+|++||++++++|++|..++ +..|+|+||||+|+|+++||++||+|.++++++++|++|+++++ .+|+...
T Consensus 453 p~~td~~f~~kl~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~v~gfleKN~D~l~~~~~~ll~~S~n~~i~~lf~~~~ 532 (674)
T cd01384 453 PKSTHETFAQKLYQTFKDHKRFEKPKLSRTAFTIDHYAGDVTYQTDQFLDKNKDYVVAEHQALLNASNCSFVAGLFPPLP 532 (674)
T ss_pred CCCCHHHHHHHHHHHhcCCCCCCCCCCCCCeeEEEEecceeeecCCCHHHhcCCcccHHHHHHHHhCchHHHHHHhcccc
Confidence 99999999999999999999998764 46899999999999999999999999999999999999999976 5775432
Q ss_pred cccCCCCccCCCccCCCCCCCCccHHHHHHHHHHHHHHHHhccCCeeeeecCCCCCCCCCccchhHHHHHhhhhChhHHH
Q 003826 316 LSQSNKPVVGPLYKAGGADSQKLSVATKFKGQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVV 395 (793)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~tv~~~f~~~L~~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~v 395 (793)
... +...+..||+++|+.||+.||++|++|+||||||||||+.+.|+.||..+|++||||+||||+|
T Consensus 533 ~~~-------------~~~~k~~tv~~~fk~~L~~L~~~L~~t~~hfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvlE~i 599 (674)
T cd01384 533 EET-------------SKSSKFSSIGSRFKQQLQSLMETLSTTEPHYIRCIKPNNVLKPGIFENENVLQQLRCGGVLEAI 599 (674)
T ss_pred ccc-------------ccccccccHHHHHHHHHHHHHHHHhccCCeEEEEeCCCcccCCCccCHHHHHHHHHHcchHHHH
Confidence 110 1123458999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCccChHHHHHHhhccccccCCC-CChHHHHHHHHHHcCCCCcceeecceeeeeeeccccccccccccc
Q 003826 396 RISRSGFPTRMSHQKFARRYGFLLLESVAS-QDPLSVSVAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTRNRT 470 (793)
Q Consensus 396 ri~r~Gyp~r~~~~~F~~RY~~L~~~~~~~-~d~~~~~~~il~~~~~~~~~~~vGkTkVFlr~~~~~~LE~~R~~~ 470 (793)
||+|.|||+|++|.+|+.||++|++...+. .+.++.|+.||..+++ +.|++|+||||||.+++..||.+|.+.
T Consensus 600 ri~r~Gyp~r~~~~~F~~ry~~L~~~~~~~~~~~~~~~~~il~~~~~--~~~~~GktkVFlr~~~~~~LE~~R~~~ 673 (674)
T cd01384 600 RISCAGYPTRRTFDEFLDRFGILAPEVLKGSSDDKAACKKILDKMGL--KGYQIGKTKVFLRAGQMAELDARRTEV 673 (674)
T ss_pred HHHhcCCCccccHHHHHHHHHHhCcccccCCCcHHHHHHHHHHhCCC--CCEEecCeeEEEcCCHHHHHHHHHHhc
Confidence 999999999999999999999999877653 4788999999998765 589999999999999999999998765
No 8
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=100.00 E-value=3.1e-115 Score=1021.67 Aligned_cols=451 Identities=40% Similarity=0.673 Sum_probs=419.7
Q ss_pred CCccCccccCCCccccCCcccHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhcCeeEEeeCCCCceeecCchHHHHH
Q 003826 2 SAKEYKYLRQSSCYSINGVDDAEQFRIVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNENHVEPVADEGLITV 81 (793)
Q Consensus 2 ~~~~y~yL~~s~~~~~~~~dD~~~f~~~~~Al~~lg~~~~~~~~if~ilaaILhLGNi~F~~~~~~~~~~~~~~~~l~~~ 81 (793)
++++|+||++++|+.++++||+.+|++|+.||++|||+++++..||+|||||||||||+|...+++ .+.+.+.+.++.|
T Consensus 212 ~~~~y~yL~~~~~~~~~~~~d~~~f~~~~~al~~lG~s~~e~~~i~~ilaaILhLGni~f~~~~~~-~~~~~~~~~l~~~ 290 (674)
T cd01378 212 KPEYYYYLNQSQCYTVDGIDDKKDFKETQNAMKVIGFSEDEQDEIFRIVAAILHLGNVQFAENGDG-AAVISDKDVLDFA 290 (674)
T ss_pred ChhhCeeecCCCccCCCCccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceEEeccCCC-ccccCChHHHHHH
Confidence 357899999999999999999999999999999999999999999999999999999999875543 3678899999999
Q ss_pred HHHhCCCHHHHHHHHccceeeecC----ceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCcceeEE
Q 003826 82 AKLIGCDIGELKLALSTRKMRVGN----DTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISI 157 (793)
Q Consensus 82 a~LLGv~~~~L~~~L~~~~i~~~~----e~i~~~lt~~qA~~~RdaLak~LY~~LF~wiV~~IN~~L~~~~~~~~~~IgI 157 (793)
|.||||++++|.++|+++++.+++ |.+.++++++||.++||+|||+||++||+|||.+||.+|.+.......+|||
T Consensus 291 a~LLgv~~~~L~~~l~~~~~~~~~~~~~e~i~~~~~~~~a~~~rdalak~lY~~lF~wiV~~IN~~l~~~~~~~~~~IgI 370 (674)
T cd01378 291 AYLLGVDPSELEKALTSRTIETGGGGRGEVYDVPLNVEQAAYTRDALAKAIYSRLFDWLVSRINKALQVKSPGKNKVIGV 370 (674)
T ss_pred HHHcCCCHHHHHHHhcccEEEeCCCCCceeEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCcceEEE
Confidence 999999999999999999999998 9999999999999999999999999999999999999999864455779999
Q ss_pred eecCCCccCCCCChhHHHHHHhhHHHHHHHHHHhhHHHHHHHhhcCCcccccccCCchhHHHhhhc-CCCcccccccccc
Q 003826 158 LDIYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEK-KPLGLLSLLDEES 236 (793)
Q Consensus 158 LDI~GFE~f~~NsfEQlcINyaNErLq~~f~~~~f~~eqeey~~EgI~~~~i~f~dN~~~ldlie~-kp~Gil~lLdee~ 236 (793)
|||||||+|+.|||||||||||||+||++||+++|+.||++|.+|||+|++|+|.||++|||||++ +|.|||++|||||
T Consensus 371 LDIfGFE~f~~NsfEQLcINyaNEkLQ~~f~~~~F~~eq~~Y~~EgI~~~~i~f~DN~~~ldLie~~~~~Gil~lLdee~ 450 (674)
T cd01378 371 LDIYGFEIFQKNSFEQFCINYVNEKLQQIFIELTLKAEQEEYVREGIKWTPIEYFNNKIVCDLIEGKRPPGIFSILDDVC 450 (674)
T ss_pred EecccccccccccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcCcCChHHHHHHHhcCCCcchHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999 8999999999999
Q ss_pred CCC-CCCcHHHHHHHHHHcCCCCccccCC--CCCcEEEecCccccccccchhhhccccccHHHHHHHhhcCCchH-HHhh
Q 003826 237 TFP-NGTDLTFANKLKQHLNSNPCFRGER--DKSFTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCSCHLP-QIFA 312 (793)
Q Consensus 237 ~~p-~~tD~~f~~kl~~~~~~~~~~~~~~--~~~F~I~HyaG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~~~~~-~lf~ 312 (793)
++| ++||++|++||++++++||++..++ +..|+|+||||+|+|+++||++||+|+++++++++|++|+++++ .+|+
T Consensus 451 ~~p~~~tD~~~~~kl~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKNrD~l~~~~~~ll~~S~n~~i~~lf~ 530 (674)
T cd01378 451 ATPHEGTDQTFLEKLNKKFSSHPHSDHFSSGSDEFRIKHYAGDVTYSVEGFCDKNKDTLFKDLIELMQSSSNPFLRSLFP 530 (674)
T ss_pred cCCCCCChHHHHHHHHHHhccCCCCCCCCCCCCcEEEEEeceeeeecCcCHHHhhcchhhHHHHHHHHhCchHHHHHHhc
Confidence 999 9999999999999999999865443 57899999999999999999999999999999999999999976 5775
Q ss_pred hcccccCCCCccCCCccCCCCCCCCccHHHHHHHHHHHHHHHHhccCCeeeeecCCCCCCCCCccchhHHHHHhhhhChh
Q 003826 313 SNMLSQSNKPVVGPLYKAGGADSQKLSVATKFKGQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVL 392 (793)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~f~~~L~~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvl 392 (793)
...... ...+.+||+++|+.||+.||++|++|+||||||||||+.+.|+.||..+|++||||+|||
T Consensus 531 ~~~~~~--------------~~~~~~tv~~~fk~qL~~Lm~~L~~t~phfIRCIKPN~~k~p~~Fd~~~V~~QLr~~GvL 596 (674)
T cd01378 531 EKSDAD--------------SKKRPTTAGFKIKTSANALVETLMKCTPHYIRCIKPNETKSPNDFDESRVLHQVKYLGLL 596 (674)
T ss_pred cccccc--------------ccCCCCcHHHHHHHHHHHHHHHHHccCCeEEEEECCCccCCchhcCHHHHHHHHHhcChH
Confidence 321100 012347999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCccChHHHHHHhhccccccCC--CCChHHHHHHHHHHcCCCCcceeecceeeeeeec-ccccccccc
Q 003826 393 EVVRISRSGFPTRMSHQKFARRYGFLLLESVA--SQDPLSVSVAILHQFNILPEMYQVGYTKLFFRAG-QIGMLEDTR 467 (793)
Q Consensus 393 e~vri~r~Gyp~r~~~~~F~~RY~~L~~~~~~--~~d~~~~~~~il~~~~~~~~~~~vGkTkVFlr~~-~~~~LE~~R 467 (793)
|+|+|+|.|||+|++|.+|+.||++|++...+ ..|+++.|+.||..+++++++|++|+||||||.+ ++..||++|
T Consensus 597 E~iri~r~Gyp~R~~~~~F~~rY~~L~~~~~~~~~~~~k~~~~~iL~~~~~~~~~~~~GkTkVFlr~~~~l~~le~~R 674 (674)
T cd01378 597 ENVRVRRAGFAYRQTFDKFLQRYKLLSPKTWPTWPGDAKSGVEVILKDLNIDPEEYQMGKTKIFIRNPETLFALEEMR 674 (674)
T ss_pred HHHHHHhcCCCccccHHHHHHHHHHhCcccccccCCCHHHHHHHHHHHcCCCcccEEecCceEEEeCchhHHHHHhcC
Confidence 99999999999999999999999999997643 3589999999999999999999999999999997 688999876
No 9
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=100.00 E-value=1.6e-114 Score=1001.59 Aligned_cols=538 Identities=48% Similarity=0.793 Sum_probs=504.5
Q ss_pred CCccCccccCCCccccCCcccHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhcCeeEEeeCCCCceeecCchHHHHH
Q 003826 2 SAKEYKYLRQSSCYSINGVDDAEQFRIVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNENHVEPVADEGLITV 81 (793)
Q Consensus 2 ~~~~y~yL~~s~~~~~~~~dD~~~f~~~~~Al~~lg~~~~~~~~if~ilaaILhLGNi~F~~~~~~~~~~~~~~~~l~~~ 81 (793)
++..|.||+|++|..++++||+.+|..++.||..+||+.++|+.||++||||||||||+|...++++.+... .+.+..+
T Consensus 218 ~~~~f~yl~q~~~~~i~~v~d~~e~~~t~~A~~~vgi~~~~q~~if~lla~ilhlGni~f~~~~~~~~~~~~-~~~~~~~ 296 (862)
T KOG0160|consen 218 TLRRFSYLNQSACVLISGVSDAEEFLSTTEAMLFVGISESHQELIFRLLAAILHLGNIQFSSGVEETSSSPV-DDHLWTA 296 (862)
T ss_pred ccccceecccccchhhcccccHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhccCceEeeccccccccccc-chHHHHH
Confidence 377899999999999999999999999999999999999999999999999999999999987666444433 3489999
Q ss_pred HHHhCCCHHHHHHHHccceeeecCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCcceeEEeecC
Q 003826 82 AKLIGCDIGELKLALSTRKMRVGNDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIY 161 (793)
Q Consensus 82 a~LLGv~~~~L~~~L~~~~i~~~~e~i~~~lt~~qA~~~RdaLak~LY~~LF~wiV~~IN~~L~~~~~~~~~~IgILDI~ 161 (793)
|.||||+.+.|...|+.|.+.++++.|+++++..+|...||+|||.||++||+|+|..||.+|..+......+|||||||
T Consensus 297 a~Llg~~~~~l~~~L~~r~i~~~~e~i~k~l~~~qa~~~rD~lak~iys~LFdwlV~~in~sL~~~~~~~~~~igVLDiY 376 (862)
T KOG0160|consen 297 AELLGCDEEALEQWLSKRKILTARESIVKPLTLSQAVKRRDALAKQLYSLLFDWLVAKINGSLGANDPKAERFIGVLDIY 376 (862)
T ss_pred HHHhCCCHHHHHHHHHHHHhhcccceeecccCHHHHHHhhhhhHHHHHHHHHHHHHHHhhcccccCCCCccceeeeehcc
Confidence 99999999999999999999999999999999999999999999999999999999999999998776667899999999
Q ss_pred CCccCCCCChhHHHHHHhhHHHHHHHHHHhhHHHHHHHhhcCCcccccccCCchhHHHhhhcCCCccccccccccCCCCC
Q 003826 162 GFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEKKPLGLLSLLDEESTFPNG 241 (793)
Q Consensus 162 GFE~f~~NsfEQlcINyaNErLq~~f~~~~f~~eqeey~~EgI~~~~i~f~dN~~~ldlie~kp~Gil~lLdee~~~p~~ 241 (793)
|||.|+.|||||||||||||+|||+||+|+|+.||++|..|||+|+.|+|.||++|+++|++ |.|+++||||+|++|.+
T Consensus 377 gFEsF~~nsfeQfcINyanEkLqq~fnqHvfk~Eqeey~~e~i~Ws~ief~dNq~~~~lie~-~~Gi~~Llde~c~lp~~ 455 (862)
T KOG0160|consen 377 GFESFEVNSFEQFCINYANEKLQQQFNQHVFKLEQEEYTKEEIDWSGIEFRDNQECLDLIEK-PLGILALLDEECMLPKG 455 (862)
T ss_pred cccccccCcHHHhhhhhHHHHhhHHHHHHHHHHHHHHHHhhccccccccCcCccchhhhhcc-ccchhhccchhccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999 89999999999999999
Q ss_pred CcHHHHHHHHHHcCCCCccccCCC--CCcEEEecCccccccccchhhhccccccHHHHHHHhhcCCchHHHhhhcccccC
Q 003826 242 TDLTFANKLKQHLNSNPCFRGERD--KSFTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCSCHLPQIFASNMLSQS 319 (793)
Q Consensus 242 tD~~f~~kl~~~~~~~~~~~~~~~--~~F~I~HyaG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~~~~~~lf~~~~~~~~ 319 (793)
+|.+|..||.+.+.+|+.|.+++. ..|+|.||||+|+|++.||++||+|++++++++++..|++.+...+...+..++
T Consensus 456 t~~~~a~KL~~~~~~~~~f~kpr~~~~~f~v~hyAg~v~y~~~~fL~knrd~v~~el~~ll~~s~~~~~~~~~~~~~~~~ 535 (862)
T KOG0160|consen 456 TDETLAQKLYQTLKRNKRFTKPRLSRTDFRVAHYAGDVTYDTEGFLEKNRDYVSDELIDLLLASDCHFVAGLAPPLRADS 535 (862)
T ss_pred CcchHHHHHHHHhccCCccCCCCCCcCCcccccccCccccchhhhccCCccccCHHHHhhhhhcccchHHHhccchhcch
Confidence 999999999999999999998874 589999999999999999999999999999999999999998765543332221
Q ss_pred CCCccCCCccCCCCCCCCccHHHHHHHHHHHHHHHHhccCCeeeeecCCCCCCCCCccchhHHHHHhhhhChhHHHHHHh
Q 003826 320 NKPVVGPLYKAGGADSQKLSVATKFKGQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISR 399 (793)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~tv~~~f~~~L~~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~vri~r 399 (793)
. +.+++.||+++|+.+|..||.+|++|+||||||||||+.+.|..||..+|++|||||||||++||++
T Consensus 536 ~------------~~~~~~tv~s~fk~~l~~Lm~~l~~t~phyircikPn~~~~p~~fe~~~v~~Qlr~~GvLetiRiS~ 603 (862)
T KOG0160|consen 536 S------------AKSKRSTVGSQFKLQLISLMETLNSTPPHYIRCIKPNAEKKPQIFENNLVLQQLRCCGVLETIRISC 603 (862)
T ss_pred h------------hhhhcccHHHHHHHHHHHHHHHhcCCCCCCceeeCcchhcccccccccceeeeccccceehhheecc
Confidence 1 2456799999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCccChHHHHHHhhccccccCCCCChHHHHHHHHHHcCCCCcceeecceeeeeeecccccccccccccchhh-Hhhh
Q 003826 400 SGFPTRMSHQKFARRYGFLLLESVASQDPLSVSVAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTRNRTLHGI-LRVQ 478 (793)
Q Consensus 400 ~Gyp~r~~~~~F~~RY~~L~~~~~~~~d~~~~~~~il~~~~~~~~~~~vGkTkVFlr~~~~~~LE~~R~~~l~aa-~~IQ 478 (793)
+|||.|.+|.||+.||++|+| .....|+++.|..+|+.++++ .|++|+|+||++.+++..|+..|..++.++ +.||
T Consensus 604 ~g~P~r~~~~Ef~~r~~~L~~-~~~~~~~~~~~~~il~~~~~~--~yq~g~tkif~r~gq~~~le~~R~~vl~~~~~~iq 680 (862)
T KOG0160|consen 604 AGFPTRWTFIEFVNRYGILMP-NDSASDDLSLCKVILEKLGLE--LYQIGKTKIFLRAGQIAVLEARRSDVLSAAKVLIQ 680 (862)
T ss_pred ccCCccccHHHHHHHHhhcCc-chhcccchHHHHHHHHHhchh--ceeeeeeeeeeccchhHHHHHHHHHHHhhHHHHHH
Confidence 999999999999999999999 444567799999999999987 999999999999999999999999998765 5699
Q ss_pred hhhcccccchhhcccccchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHhhhhHHHHHHHHHhhHHH
Q 003826 479 SCFRGHQARLCLKELRRGIVALQSFIRGEKIRKEYALVLQRHRAAVVIQRQIKSRVARQKLKNIKYSSIMIQSVIRGWLV 558 (793)
Q Consensus 479 ~~~Rg~~~R~~~~~~r~a~i~IQs~~Rg~~aRr~~~~l~~~~~AAi~IQ~~~R~~~~R~~~~~~r~aai~IQs~~Rg~~a 558 (793)
+.+|+|+.|++|..++++++.||+.+||+++|+ ..+ +..||+.||+.||++..|+.|...+.+++.+|+.+|++++
T Consensus 681 ~~~r~~~~r~~f~~~r~~~~~~Q~~~rG~~~r~--~~~--~~~aai~~q~~~r~~~~r~~y~~~~~~~~~~qs~~r~~~~ 756 (862)
T KOG0160|consen 681 RQIRGYLARKKFLQLRSAVIIIQAYSRGVLARR--ETE--REAAAIGIQKECRSYLNRRRYRALIPASITIQSGVRAMLA 756 (862)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH--hhH--HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999998 222 5689999999999999999999999999999999999999
Q ss_pred Hh
Q 003826 559 RR 560 (793)
Q Consensus 559 Rr 560 (793)
|.
T Consensus 757 r~ 758 (862)
T KOG0160|consen 757 RN 758 (862)
T ss_pred cc
Confidence 98
No 10
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=100.00 E-value=1.2e-114 Score=1019.44 Aligned_cols=460 Identities=42% Similarity=0.690 Sum_probs=421.2
Q ss_pred CccCccccCCCccccCCcccHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhcCeeEEeeCCCCceeecCchHHHHHH
Q 003826 3 AKEYKYLRQSSCYSINGVDDAEQFRIVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNENHVEPVADEGLITVA 82 (793)
Q Consensus 3 ~~~y~yL~~s~~~~~~~~dD~~~f~~~~~Al~~lg~~~~~~~~if~ilaaILhLGNi~F~~~~~~~~~~~~~~~~l~~~a 82 (793)
+.+|+||++++| .++++||+.+|++|+.||+.|||+++++..||+|||||||||||+|...++++.+.+.+.+.+..||
T Consensus 226 ~~~y~yL~~~~~-~~~~~~d~~~f~~~~~al~~lG~~~~e~~~i~~iLaaILhLGni~F~~~~~~~~~~~~~~~~l~~~a 304 (693)
T cd01377 226 PNDYRYLSQGEL-TIPGVDDAEEFKLTDEAFDILGFSDEEKNSIFKIVAAILHLGNIKFKQRQREEQAELDGTEEADKAA 304 (693)
T ss_pred hhcCeeeCCCCc-cCCCCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceEEEecCCCCccccCChHHHHHHH
Confidence 379999999876 5889999999999999999999999999999999999999999999987666778889999999999
Q ss_pred HHhCCCHHHHHHHHccceeeecCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCcceeEEeecCC
Q 003826 83 KLIGCDIGELKLALSTRKMRVGNDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYG 162 (793)
Q Consensus 83 ~LLGv~~~~L~~~L~~~~i~~~~e~i~~~lt~~qA~~~RdaLak~LY~~LF~wiV~~IN~~L~~~~~~~~~~IgILDI~G 162 (793)
.||||++++|.++|+++++.++++.+.+++|+++|.++||+|||+||++||+|||.+||.+|.+. .....+||||||||
T Consensus 305 ~LLgv~~~~L~~~l~~~~~~~~~e~i~~~~~~~~A~~~rDalak~lY~~LF~wiV~~IN~~l~~~-~~~~~~IgiLDIfG 383 (693)
T cd01377 305 HLLGVNSADLLKALLHPRIKVGREWVTKGQNVEQVSFSVGALAKALYERLFLWLVKRINKTLDTK-QQRAYFIGVLDIAG 383 (693)
T ss_pred HHhCCCHHHHHHHhcceEEEECCeeEeeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCCCceEEEEeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999875 34567999999999
Q ss_pred CccCCCCChhHHHHHHhhHHHHHHHHHHhhHHHHHHHhhcCCcccccccC-CchhHHHhhhcCCCccccccccccCCCCC
Q 003826 163 FESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFE-DNKDCLNLFEKKPLGLLSLLDEESTFPNG 241 (793)
Q Consensus 163 FE~f~~NsfEQlcINyaNErLq~~f~~~~f~~eqeey~~EgI~~~~i~f~-dN~~~ldlie~kp~Gil~lLdee~~~p~~ 241 (793)
||+|+.|||||||||||||+||++|++++|+.||++|.+|||+|+.|+|. ||++|||||+++|.|||++|||||++|++
T Consensus 384 FE~f~~NsfEQLcINyaNEkLQ~~f~~~vf~~eq~~Y~~EgI~~~~i~~~~dn~~~ldLie~~~~Gil~lLdee~~~~~~ 463 (693)
T cd01377 384 FEIFDFNSFEQLCINYTNEKLQQFFNHHMFVLEQEEYQREGIEWTFIDFGLDLQPTIDLIEKNPMGILSLLDEECVFPKA 463 (693)
T ss_pred ccccCCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccCCCcHHHHHHHhcCCCchHhhhhHHhcCCCC
Confidence 99999999999999999999999999999999999999999999999995 99999999999999999999999999999
Q ss_pred CcHHHHHHHHHHcCCCCcccc--C--CCCCcEEEecCccccccccchhhhccccccHHHHHHHhhcCCchH-HHhhhccc
Q 003826 242 TDLTFANKLKQHLNSNPCFRG--E--RDKSFTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCSCHLP-QIFASNML 316 (793)
Q Consensus 242 tD~~f~~kl~~~~~~~~~~~~--~--~~~~F~I~HyaG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~~~~~-~lf~~~~~ 316 (793)
||.+|++||++++.+|++|.. + .+..|+|+||||+|+|+++||++||+|.++++++++|++|+++++ .+|+....
T Consensus 464 tD~~~~~kl~~~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~~~~i~~lf~~~~~ 543 (693)
T cd01377 464 TDKTFVEKLYDNHLGKSKFKKPKKGKAKAHFSLVHYAGTVDYNIDGWLEKNKDPLNDNVVGLLKKSSDKLVAELFKDYAE 543 (693)
T ss_pred CHHHHHHHHHHHhcCCCcccccCCCCCCCcEEEEeeceeEeeccccHHHhccccccHHHHHHHHhCchHHHHHHhhhhcc
Confidence 999999999999999998732 2 246899999999999999999999999999999999999999976 57765432
Q ss_pred ccCCCCccCCCccCCCCCCCCccHHHHHHHHHHHHHHHHhccCCeeeeecCCCCCCCCCccchhHHHHHhhhhChhHHHH
Q 003826 317 SQSNKPVVGPLYKAGGADSQKLSVATKFKGQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVR 396 (793)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~tv~~~f~~~L~~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~vr 396 (793)
..+. . .++.. .+...++.+||+++|+.||+.||++|++|+||||||||||+.+.|+.||..+|++||||+||||+|+
T Consensus 544 ~~~~-~-~~~~~-~~~~~~~~~tv~~~F~~qL~~L~~~L~~t~~hfIRCIKPN~~k~p~~Fd~~~V~~QLr~~GvlEtvr 620 (693)
T cd01377 544 ASGD-G-GGGGG-KKKKGGSFRTVSQLYKEQLNKLMTTLRSTNPHFVRCIIPNEEKKPGKLDAHLVLDQLRCNGVLEGIR 620 (693)
T ss_pred cccc-c-ccccC-CCCcCCccccHHHHHHHHHHHHHHHHhccCCeEEEEeCcCccCCCCccCHHHHHHHHHhcchHHHHH
Confidence 1110 0 01111 1111234589999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCccChHHHHHHhhccccccCC--CCChHHHHHHHHHHcCCCCcceeecceeeeeeecccccccccc
Q 003826 397 ISRSGFPTRMSHQKFARRYGFLLLESVA--SQDPLSVSVAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTR 467 (793)
Q Consensus 397 i~r~Gyp~r~~~~~F~~RY~~L~~~~~~--~~d~~~~~~~il~~~~~~~~~~~vGkTkVFlr~~~~~~LE~~R 467 (793)
|+|.|||+|++|.+|+.||++|++..++ ..|+++.|+.||+.+++++.+|++|+||||||.+++..||.+|
T Consensus 621 irr~Gyp~R~~f~~F~~rY~~L~~~~~~~~~~d~k~~~~~iL~~~~~~~~~~~~G~TKVFlk~~~~~~LE~~R 693 (693)
T cd01377 621 ICRKGFPNRILYAEFRQRYEILAPNAIPKGFMDSKKASEKILKSLELDPEQYRFGHTKVFFRAGVLAHLEEMR 693 (693)
T ss_pred HHHcCCCccccHHHHHHHHHHhCcccccccCCCHHHHHHHHHHhcCCCcccEEecCCeEeECccHHHHHhhcC
Confidence 9999999999999999999999998754 3588999999999999999999999999999999999999876
No 11
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=100.00 E-value=1.5e-114 Score=1014.94 Aligned_cols=462 Identities=38% Similarity=0.669 Sum_probs=419.0
Q ss_pred CCccCccccCCCccccCCcccHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhcCeeEEeeCC--CCceeecCchHHH
Q 003826 2 SAKEYKYLRQSSCYSINGVDDAEQFRIVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDN--ENHVEPVADEGLI 79 (793)
Q Consensus 2 ~~~~y~yL~~s~~~~~~~~dD~~~f~~~~~Al~~lg~~~~~~~~if~ilaaILhLGNi~F~~~~~--~~~~~~~~~~~l~ 79 (793)
++.+|+||++++|..++++||+.+|+.|+.||++|||+++++..||+|||||||||||+|...++ .+.+.+.+.+.+.
T Consensus 210 ~~~~y~yL~~~~~~~~~~~~d~~~f~~~~~al~~lg~~~~e~~~i~~iLaaILhLGni~F~~~~~~~~~~~~~~~~~~l~ 289 (677)
T cd01387 210 EAETYYYLNQGGNCEIAGKSDADDFRRLLAAMEVLGFSSEDQDSIFRILASILHLGNVYFEKRETDAQEVASVVSAREIQ 289 (677)
T ss_pred CHHhCchhcCCCcccCCCcCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcCeEEeeccCCCCcccccCCHHHHH
Confidence 46789999999999899999999999999999999999999999999999999999999987543 2357788889999
Q ss_pred HHHHHhCCCHHHHHHHHccceeeecCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCcceeEEee
Q 003826 80 TVAKLIGCDIGELKLALSTRKMRVGNDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILD 159 (793)
Q Consensus 80 ~~a~LLGv~~~~L~~~L~~~~i~~~~e~i~~~lt~~qA~~~RdaLak~LY~~LF~wiV~~IN~~L~~~~~~~~~~IgILD 159 (793)
.||.||||++++|.++||++++.++++.+.+++++++|.++||+|||+||++||+|||.+||.+|.+. ....+|||||
T Consensus 290 ~~a~LLgv~~~~L~~~lt~~~~~~~~e~i~~~~~~~~a~~~rdalak~lY~~lF~wiV~~iN~~l~~~--~~~~~IgILD 367 (677)
T cd01387 290 AVAELLQISPEGLQKAITFKVTETRREKIFTPLTVESAVDARDAIAKVLYALLFNWLITRVNALVSPT--QDTLSIAILD 367 (677)
T ss_pred HHHHHhCCCHHHHHHHhccCeEEeCCceEeccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CCCceEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999874 3457999999
Q ss_pred cCCCccCCCCChhHHHHHHhhHHHHHHHHHHhhHHHHHHHhhcCCcccccccCCchhHHHhhhcCCCccccccccccCCC
Q 003826 160 IYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEKKPLGLLSLLDEESTFP 239 (793)
Q Consensus 160 I~GFE~f~~NsfEQlcINyaNErLq~~f~~~~f~~eqeey~~EgI~~~~i~f~dN~~~ldlie~kp~Gil~lLdee~~~p 239 (793)
|||||+|+.|||||||||||||+||++||+++|+.||++|.+|||+|++|+|.||++|||||+++|.|||+||||||++|
T Consensus 368 IfGFE~f~~NsfEQLcINyaNEkLQ~~f~~~vF~~eq~eY~~EgI~~~~i~f~dN~~~ldLi~~kp~Gil~lLdee~~~p 447 (677)
T cd01387 368 IYGFEDLSFNSFEQLCINYANENLQYLFNKIVFQEEQEEYIREQLDWTEIAFADNQPVINLISLKPYGILRILDDQCCFP 447 (677)
T ss_pred cCccccCCCCCHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCcCChHHHHHHHhcCCCchHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHcCCCCccccCC--CCCcEEEecCccccccccchhhhccccccHHHHHHHhhcCCchH-HHhhhccc
Q 003826 240 NGTDLTFANKLKQHLNSNPCFRGER--DKSFTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCSCHLP-QIFASNML 316 (793)
Q Consensus 240 ~~tD~~f~~kl~~~~~~~~~~~~~~--~~~F~I~HyaG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~~~~~-~lf~~~~~ 316 (793)
++||.+|++|++..+++|+.|..++ ...|+|+||||+|+|+++||++||+|.++++++++|.+|+++++ .+|+....
T Consensus 448 ~~td~~~~~kl~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~~~~i~~lf~~~~~ 527 (677)
T cd01387 448 QATDHTFLQKCHYHHGANPLYSKPKMPLPEFTIKHYAGKVTYQVHKFLDKNHDQVRQDVLDLFVSSRTRVVAHLFSSHAA 527 (677)
T ss_pred CCchHHHHHHHHHhccCCccccCCCCCCCeeEEEEeCceeeecCCChHHhccchhhHHHHHHHHhCCcHHHHHHHhhhhc
Confidence 9999999999999999999998764 45899999999999999999999999999999999999999976 46754322
Q ss_pred ccCCCCccCCCccCCCCCCCCccHHHHHHHHHHHHHHHHhccCCeeeeecCCCCCCCCCccchhHHHHHhhhhChhHHHH
Q 003826 317 SQSNKPVVGPLYKAGGADSQKLSVATKFKGQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVR 396 (793)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~tv~~~f~~~L~~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~vr 396 (793)
..+.++. +...+++...+.+||+++|+.||+.||+.|++|+||||||||||+.+.|+.||..+|++||||+||||+|+
T Consensus 528 ~~~~~~~--~~~s~~~~~~~~~tv~~~f~~sL~~L~~~l~~t~phfIRCIKPN~~k~~~~Fd~~~V~~QLr~~GvlE~vr 605 (677)
T cd01387 528 QRAPKRL--GKSSSGTRLYKAHTVAAKFQQSLLDLVEKMERCNPLFVRCLKPNHKKEPGLFEPDVVMAQLRYSGVLETVR 605 (677)
T ss_pred ccccccc--cCCCccccccCCCcHHHHHHHHHHHHHHHHhcCCCeEEEEECCCCcCCccccChHHHHHHHHHhchHHHHH
Confidence 1111110 00111112334689999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCccChHHHHHHhhccccccCCCCChHHH-HHHHHHHcCCCCcceeecceeeeeeecccccccccc
Q 003826 397 ISRSGFPTRMSHQKFARRYGFLLLESVASQDPLSV-SVAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTR 467 (793)
Q Consensus 397 i~r~Gyp~r~~~~~F~~RY~~L~~~~~~~~d~~~~-~~~il~~~~~~~~~~~vGkTkVFlr~~~~~~LE~~R 467 (793)
|+|.|||+|++|.+|+.||++|++......++.+. +..+++.+++++++|++|+||||||.+++..||.+|
T Consensus 606 i~r~Gyp~r~~~~~F~~rY~~L~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~iG~TkVFlk~~~~~~LE~~r 677 (677)
T cd01387 606 IRKEGFPVRLPFQHFIDRYRCLVALKLARPAPGDMCVSELSRLCGVEPPMYRVGASKLFLKEHLHQLLESMR 677 (677)
T ss_pred HHHccCCccccHHHHHHHHHHhCcccccCCCcHHHHHHHHHHHcCCCcccEEecceeEEEcCCHHHHHHhcC
Confidence 99999999999999999999999976544444444 467888999999999999999999999999999876
No 12
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=100.00 E-value=1.1e-113 Score=1009.72 Aligned_cols=460 Identities=37% Similarity=0.628 Sum_probs=418.0
Q ss_pred CCccCccccCCCccccCCcccHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhcCeeEEeeC---CCCceeecCchHH
Q 003826 2 SAKEYKYLRQSSCYSINGVDDAEQFRIVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVID---NENHVEPVADEGL 78 (793)
Q Consensus 2 ~~~~y~yL~~s~~~~~~~~dD~~~f~~~~~Al~~lg~~~~~~~~if~ilaaILhLGNi~F~~~~---~~~~~~~~~~~~l 78 (793)
++.+|+||++++|...+++||+.+|..|+.||++|||+++++..||+|||||||||||+|...+ .++.+.+.+.+.+
T Consensus 220 ~~~~y~yL~~~~~~~~~~~dd~~~f~~~~~al~~lG~~~~~~~~i~~iLaaILhLGni~F~~~~~~~~~~~~~~~~~~~l 299 (692)
T cd01385 220 KQPDYFYLNQHNLKIEDGEDEKHEFERLKQAMEMVGFLAATQKQIFAVLSAVLLLGNVTYKKRATYHRDESLEVGNPEVV 299 (692)
T ss_pred ChhcCCeeCCCCCccCCCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCceeeecccCCCCCceecCCHHHH
Confidence 4568999999988877899999999999999999999999999999999999999999998753 2456788899999
Q ss_pred HHHHHHhCCCHHHHHHHHccceeeecCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCC--CCcceeE
Q 003826 79 ITVAKLIGCDIGELKLALSTRKMRVGNDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKR--RTGRSIS 156 (793)
Q Consensus 79 ~~~a~LLGv~~~~L~~~L~~~~i~~~~e~i~~~lt~~qA~~~RdaLak~LY~~LF~wiV~~IN~~L~~~~~--~~~~~Ig 156 (793)
..||.||||++++|.++||++++.++||.++++++++||.++||+|||+||++||+|||.+||.+|.+... ....+||
T Consensus 300 ~~~a~LLgv~~~~L~~~l~~~~~~~~~e~i~~~~~~~qa~~~rdalak~lY~~LF~wiV~~IN~~l~~~~~~~~~~~~Ig 379 (692)
T cd01385 300 DLLSQLLKVKRETLMEALTKKRTVTVNETLILPYSLSEAITARDAMAKCLYSALFDWIVLRINHALLNKDDVAVSGLSIG 379 (692)
T ss_pred HHHHHHhCCCHHHHHHHhccCeEEeCCCeEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999987542 2457999
Q ss_pred EeecCCCccCCC-CChhHHHHHHhhHHHHHHHHHHhhHHHHHHHhhcCCcccccccCCchhHHHhhhcCCCccccccccc
Q 003826 157 ILDIYGFESFDR-NSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEKKPLGLLSLLDEE 235 (793)
Q Consensus 157 ILDI~GFE~f~~-NsfEQlcINyaNErLq~~f~~~~f~~eqeey~~EgI~~~~i~f~dN~~~ldlie~kp~Gil~lLdee 235 (793)
||||||||+|+. |||||||||||||+||++|++++|+.||++|.+|||+|++|+|.||++|||||++||.|||++||||
T Consensus 380 iLDI~GFE~f~~~NsfEQLcINyaNEkLQ~~f~~~vf~~eq~~Y~~EgI~~~~i~f~dN~~~ldLie~k~~Gil~lLdee 459 (692)
T cd01385 380 VLDIFGFEDFGRCNSFEQLCINYANEQLQYYFNQHIFKLEQEEYQGEGITWTNIEYTDNVGCIQLFSKKPTGLLYLLDEE 459 (692)
T ss_pred EEecCccccCCCCCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCcHHHHHHHhcCCccHHHHhHHH
Confidence 999999999999 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCcHHHHHHHHHHcCCCCccccCC--CCCcEEEecCccccccccchhhhccccccHHHHHHHhhcCCchH-HHhh
Q 003826 236 STFPNGTDLTFANKLKQHLNSNPCFRGER--DKSFTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCSCHLP-QIFA 312 (793)
Q Consensus 236 ~~~p~~tD~~f~~kl~~~~~~~~~~~~~~--~~~F~I~HyaG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~~~~~-~lf~ 312 (793)
|++|++||.+|++|+++++++|++|..++ ...|+|+||||+|+|+++||++||+|.|+++++++|++|+++++ .+|.
T Consensus 460 ~~~p~~td~~~l~kl~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~n~~i~~lf~ 539 (692)
T cd01385 460 SNFPHATSQTLLAKFNQQHKDNKYYEGPQVKEPAFIIQHYAGKVKYQIKDFREKNMDLMRQDIVALLKGSDSSYVRELIG 539 (692)
T ss_pred hcCCCCCHHHHHHHHHHHhCCCCCccCCCCCCCeEEEEEecceeeecCCCHHHhccccccHHHHHHHHhCccHHHHHHhc
Confidence 99999999999999999999999997663 56899999999999999999999999999999999999999976 5775
Q ss_pred hcccccCCCCccCCCccCCCCCCCCccHHHHHHHHHHHHHHHHhccCCeeeeecCCCCCCCCCccchhHHHHHhhhhChh
Q 003826 313 SNMLSQSNKPVVGPLYKAGGADSQKLSVATKFKGQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVL 392 (793)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~f~~~L~~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvl 392 (793)
....... . .+..++.......+||+++|+.||+.||+.|++|+||||||||||+.+.|+.||..+|++||||+||+
T Consensus 540 ~~~~~~~-~---~~~~~~~~~~~~~~tV~~~f~~~L~~L~~~L~~t~~hfIRCIKPN~~k~p~~Fd~~~V~~QLr~~Gvl 615 (692)
T cd01385 540 MDPVAVF-R---WAVLRAAFRAMAAPSVSAQFQTSLNKLMETLGKAEPFFIRCIKSNAEKIENCFDDELVLRQLRYTGML 615 (692)
T ss_pred cCccccc-c---cccccccccCccCCcHHHHHHHHHHHHHHHHhccCCeEEEEeCCCCccCcCccCHHHHHHHHHhhchH
Confidence 3221100 0 00011111122347999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCccChHHHHHHhhccccccCCCCChHHHHHHHHHHcCCCCcceeecceeeeeeecccccccccc
Q 003826 393 EVVRISRSGFPTRMSHQKFARRYGFLLLESVASQDPLSVSVAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTR 467 (793)
Q Consensus 393 e~vri~r~Gyp~r~~~~~F~~RY~~L~~~~~~~~d~~~~~~~il~~~~~~~~~~~vGkTkVFlr~~~~~~LE~~R 467 (793)
|+|+|+|.|||+|++|.+|+.||++|+|.... ..++.|+.+|+.+++++.+|++|+||||||.+++..||+.-
T Consensus 616 E~irirr~Gyp~R~~~~~F~~rY~~L~~~~~~--~~~~~~~~il~~~~~~~~~~~iGkTkVFlr~~~~~~Le~~~ 688 (692)
T cd01385 616 ETVRIRRAGYSVRYTYQDFTQQYRILLPKGAQ--SCREDISTLLSKMKIDKRNYQIGKTKIFMRETEKQALDETL 688 (692)
T ss_pred HHHHHHhccCCccccHHHHHHHHHHhCccccc--chHHHHHHHHHhcCCCcccEEeeCceEEEcccHHHHHHHHH
Confidence 99999999999999999999999999987532 34567999999999999999999999999999999998763
No 13
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=100.00 E-value=2.1e-113 Score=1010.81 Aligned_cols=456 Identities=34% Similarity=0.585 Sum_probs=413.7
Q ss_pred CCccCccccCCC--------------------------ccccCCcccHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 003826 2 SAKEYKYLRQSS--------------------------CYSINGVDDAEQFRIVVEALDIVHVSKEDQESVFAMLAAVLW 55 (793)
Q Consensus 2 ~~~~y~yL~~s~--------------------------~~~~~~~dD~~~f~~~~~Al~~lg~~~~~~~~if~ilaaILh 55 (793)
++++|+||+++. |..++++||+.+|+.|+.||++|||+++++..||+|||||||
T Consensus 214 ~~~~y~yL~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~dD~~~f~~~~~Al~~lg~s~~e~~~i~~iLaaILh 293 (717)
T cd01382 214 SPDDFRYLNRGCTRYFANKETDKQILQNRKSPEHLKKGALKDPLLDDYGDFQRMCVALKKIGLDDTEKLDLFRVVAGVLH 293 (717)
T ss_pred ChhhCeeecCCcccccccccccccccccccccccccccccCCCCCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Confidence 578999999752 335688999999999999999999999999999999999999
Q ss_pred hcCeeEEeeCCC-Ccee--ecCchHHHHHHHHhCCCHHHHHHHHccceee-----ecCceEEecCCHHHHHHHHHHHHHH
Q 003826 56 LGNVSFTVIDNE-NHVE--PVADEGLITVAKLIGCDIGELKLALSTRKMR-----VGNDTIVQNLTLSQATDTRDALAKS 127 (793)
Q Consensus 56 LGNi~F~~~~~~-~~~~--~~~~~~l~~~a~LLGv~~~~L~~~L~~~~i~-----~~~e~i~~~lt~~qA~~~RdaLak~ 127 (793)
||||+|...++. +.+. ..+.+.+..||.||||++++|.++|+++++. ++|+.+.++++++||.+.||+|||+
T Consensus 294 LGni~F~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~r~~~~~~g~~~~~~i~~~l~~~qA~~~rdalak~ 373 (717)
T cd01382 294 LGNIDFEEAGSTSGGCNVKNQSEQSLEYCAELLGLDQDDLRVSLTTRVMLTTAGGAKGTVIKVPLKVEQANNARDALAKA 373 (717)
T ss_pred cCceeEeccCCCCCcceecCCCHHHHHHHHHHcCCCHHHHHHHHhheEEecccccCCCceEEecCCHHHHHHHHHHHHHH
Confidence 999999875432 2233 3467899999999999999999999999998 7889999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhccCCCCCcceeEEeecCCCccCCCCChhHHHHHHhhHHHHHHHHHHhhHHHHHHHhhcCCccc
Q 003826 128 IYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWA 207 (793)
Q Consensus 128 LY~~LF~wiV~~IN~~L~~~~~~~~~~IgILDI~GFE~f~~NsfEQlcINyaNErLq~~f~~~~f~~eqeey~~EgI~~~ 207 (793)
||++||+|||.+||.+|.+.. ...+||||||||||+|+.|||||||||||||+||++|++++|+.||++|.+|||+|+
T Consensus 374 lY~~LF~wiV~~IN~~l~~~~--~~~~IgiLDIfGFE~f~~NsfEQLcINyaNEkLQ~~f~~~if~~Eq~~Y~~EgI~~~ 451 (717)
T cd01382 374 VYSHLFDHVVSRVNQCFPFET--SSNFIGVLDIAGFEYFEHNSFEQFCINYCNEKLQQFFNERILKEEQELYQREGLGVN 451 (717)
T ss_pred HHHHHHHHHHHHHHHhcCCCC--CCcEEEEEeccccccCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 999999999999999997643 457999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCchhHHHhhhcCCCccccccccccCCCCCCcHHHHHHHHHHcCCCCccccCC------------CCCcEEEecCc
Q 003826 208 KVDFEDNKDCLNLFEKKPLGLLSLLDEESTFPNGTDLTFANKLKQHLNSNPCFRGER------------DKSFTVSHYAG 275 (793)
Q Consensus 208 ~i~f~dN~~~ldlie~kp~Gil~lLdee~~~p~~tD~~f~~kl~~~~~~~~~~~~~~------------~~~F~I~HyaG 275 (793)
+|+|.||++|||||+++|.|||++|||||++|++||.+|++||++.+++|++|..++ +..|+|+||||
T Consensus 452 ~i~~~DN~~~ldLie~k~~Gil~lLDee~~~p~~tD~~f~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~I~HyAG 531 (717)
T cd01382 452 EVHYVDNQDCIDLIEAKLNGILDILDEENRLPQPSDQHFTSVVHQKHKDHFRLTIPRKSKLAVHRNLRDDEGFIIRHFAG 531 (717)
T ss_pred cccccccHHHHHHHhcCCccHHHHhHHHhcCCCCCHHHHHHHHHHHhcCCcCccCCCccccccccccCCCCCEEEEecce
Confidence 999999999999999999999999999999999999999999999999888775432 24799999999
Q ss_pred cccccccchhhhccccccHHHHHHHhhcCCchH-HHhhhcccccCCCCccCCCccCCCCCCCCccHHHHHHHHHHHHHHH
Q 003826 276 EVIYDTTGFLEKNRDLLHLDSIELLSSCSCHLP-QIFASNMLSQSNKPVVGPLYKAGGADSQKLSVATKFKGQLFQLMQR 354 (793)
Q Consensus 276 ~V~Y~~~gfleKN~D~l~~~~~~ll~~S~~~~~-~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~f~~~L~~Lm~~ 354 (793)
+|+|+++||++||+|.|+.+++++|++|+++++ .+|.......... + .....+..||+++|+.||+.||++
T Consensus 532 ~V~Y~v~gfleKNkD~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~~~----~----~~~k~~~~tv~~~fk~qL~~Lm~~ 603 (717)
T cd01382 532 AVCYETTQFVEKNNDALHMSLESLICESKDKFLRSLFESSTNNNDTK----Q----KAGKLSFISVGNKFKTQLNLLLEK 603 (717)
T ss_pred eEeecCCChHHhcCccccHHHHHHHHhCchHHHHHHhcccccccccc----c----cccCccCccHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999976 5776433111000 0 001224579999999999999999
Q ss_pred HhccCCeeeeecCCCCCCCCCccchhHHHHHhhhhChhHHHHHHhcCCCCccChHHHHHHhhccccccCCCCChHHHHHH
Q 003826 355 LESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFLLLESVASQDPLSVSVA 434 (793)
Q Consensus 355 L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~~F~~RY~~L~~~~~~~~d~~~~~~~ 434 (793)
|++|+||||||||||+.+.|+.||..+|++||||+||||+|+|+|.|||+|++|.+|+.||+.|+|......|++..|+.
T Consensus 604 L~~t~~hfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvLE~vri~r~Gyp~R~~f~~F~~ry~~l~~~~~~~~~~~~~~~~ 683 (717)
T cd01382 604 LRSTGSSFIRCIKPNLKMVSHQFEGAQILSQLQCSGMVSVLDLMQGGFPSRASFHELYNMYKKYMPPKLVRLDPRLFCKA 683 (717)
T ss_pred HhccCCeeeeeeCCCcccCCCCCChHHHHHHHHhcchHHHHHHHHccCchhhhHHHHHHHHHHhCCcccCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999887767789999999
Q ss_pred HHHHcCCCCcceeecceeeeeeecccccccccc
Q 003826 435 ILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTR 467 (793)
Q Consensus 435 il~~~~~~~~~~~vGkTkVFlr~~~~~~LE~~R 467 (793)
||+.+++++++|++|+||||||.+++..||.+.
T Consensus 684 iL~~~~~~~~~~~~GkTKVFlr~g~~~~le~~~ 716 (717)
T cd01382 684 LFKALGLNENDYKFGLTKVFFRPGKFAEFDQIM 716 (717)
T ss_pred HHHHcCCCcccEEecceeEEecccHHHHHHHHh
Confidence 999999999999999999999999999998763
No 14
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=100.00 E-value=9.9e-112 Score=996.65 Aligned_cols=453 Identities=49% Similarity=0.821 Sum_probs=422.3
Q ss_pred CCccCccccCCCccccCCcccHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhcCeeEEeeCCCCc-eeecCchHHHH
Q 003826 2 SAKEYKYLRQSSCYSINGVDDAEQFRIVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNENH-VEPVADEGLIT 80 (793)
Q Consensus 2 ~~~~y~yL~~s~~~~~~~~dD~~~f~~~~~Al~~lg~~~~~~~~if~ilaaILhLGNi~F~~~~~~~~-~~~~~~~~l~~ 80 (793)
++.+|+||++++|..++++||+++|++|+.||+.|||+++++..||+|||||||||||+|...++++. ..+.+.+.++.
T Consensus 218 ~~~~y~yL~~~~~~~~~~~~d~~~f~~~~~al~~lG~~~~e~~~I~~iLaaILhLGni~F~~~~~~~~~~~~~~~~~l~~ 297 (677)
T smart00242 218 SPEDYRYLNQGGCLSVDGIDDAEEFKETLNAMRVLGFSEEEQESIFKILAAILHLGNIEFEEGRNDNAASTVKDKEELEN 297 (677)
T ss_pred ChhhCceeCCCCCccCCCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceeEEecCCCCcccccCCHHHHHH
Confidence 46799999999999999999999999999999999999999999999999999999999987654432 34788899999
Q ss_pred HHHHhCCCHHHHHHHHccceeeecCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCcceeEEeec
Q 003826 81 VAKLIGCDIGELKLALSTRKMRVGNDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDI 160 (793)
Q Consensus 81 ~a~LLGv~~~~L~~~L~~~~i~~~~e~i~~~lt~~qA~~~RdaLak~LY~~LF~wiV~~IN~~L~~~~~~~~~~IgILDI 160 (793)
||.||||++++|.++|+++++.+++|.+++++++++|.+.||+|||+||++||+|||.+||.+|.+.. ....+||||||
T Consensus 298 ~a~LLgv~~~~L~~~l~~~~~~~~~e~~~~~~~~~~a~~~rd~lak~lY~~lF~wiV~~iN~~l~~~~-~~~~~IgiLDi 376 (677)
T smart00242 298 AAELLGVDPEELEKALTKRKIKTGGEVITKPLNVEQALDARDALAKALYSRLFDWLVKRINKSLSFKD-GSTYFIGVLDI 376 (677)
T ss_pred HHHHhCCCHHHHHHHhcccEEEeCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCceEEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999998753 45679999999
Q ss_pred CCCccCCCCChhHHHHHHhhHHHHHHHHHHhhHHHHHHHhhcCCcccccccCCchhHHHhhhcCCCccccccccccCCCC
Q 003826 161 YGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEKKPLGLLSLLDEESTFPN 240 (793)
Q Consensus 161 ~GFE~f~~NsfEQlcINyaNErLq~~f~~~~f~~eqeey~~EgI~~~~i~f~dN~~~ldlie~kp~Gil~lLdee~~~p~ 240 (793)
||||+|+.|||||||||||||+||++|++++|+.||++|.+|||+|+.|+|.||++|||||+++|.|||++|||||++|+
T Consensus 377 fGFE~f~~NsfEQLcINyaNEkLq~~f~~~~f~~eq~~y~~EgI~~~~i~~~dN~~~l~li~~~~~Gil~lLdee~~~~~ 456 (677)
T smart00242 377 YGFEIFEVNSFEQLCINYANEKLQQFFNQHVFKLEQEEYEREGIDWTFIDFFDNQDCIDLIEKKPPGILSLLDEECRFPK 456 (677)
T ss_pred ccccccccCCHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHHcCCccHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHcCCCCccccCC---CCCcEEEecCccccccccchhhhccccccHHHHHHHhhcCCchH-HHhhhccc
Q 003826 241 GTDLTFANKLKQHLNSNPCFRGER---DKSFTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCSCHLP-QIFASNML 316 (793)
Q Consensus 241 ~tD~~f~~kl~~~~~~~~~~~~~~---~~~F~I~HyaG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~~~~~-~lf~~~~~ 316 (793)
+||.+|++||++++++|++|..++ +..|+|+||||+|.|+++||++||+|.++++++++|+.|+++++ .+|+....
T Consensus 457 ~td~~~~~kl~~~~~~~~~~~~~~~~~~~~F~I~H~AG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~n~~i~~lf~~~~~ 536 (677)
T smart00242 457 ATDQTFLEKLNQTHEKHPHFSKPRKKGRTEFIIKHYAGDVTYDVTGFLEKNKDTLFKDLIELLQSSKNPLIASLFPSGES 536 (677)
T ss_pred CCHHHHHHHHHHHhcCCCCccCCCCCCCCeEEEEecceeEeecCccHHHHccchhhHHHHHHHHhCCcHHHHHHhccccc
Confidence 999999999999999999998763 56899999999999999999999999999999999999999976 57754331
Q ss_pred ccCCCCccCCCccCCCCCCCCccHHHHHHHHHHHHHHHHhccCCeeeeecCCCCCCCCCccchhHHHHHhhhhChhHHHH
Q 003826 317 SQSNKPVVGPLYKAGGADSQKLSVATKFKGQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVR 396 (793)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~tv~~~f~~~L~~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~vr 396 (793)
.. +...+.+||+++|+.||+.||+.|++|+||||||||||+.+.|+.||..+|++||||+||+|+|+
T Consensus 537 ~~-------------~~~~~~~tv~~~fk~~L~~L~~~l~~t~~hfIRCIKPN~~k~~~~Fd~~~V~~QLr~~Gvle~ir 603 (677)
T smart00242 537 NA-------------GSKKRFRTVGSQFKESLNKLMDTLNSTNPHFIRCIKPNEEKKPGDFDSSLVLHQLRYLGVLETIR 603 (677)
T ss_pred cc-------------cccCCCCcHHHHHHHHHHHHHHHHhccCCeEEEEeCCCcccCcccccHHHHHHHHHhcccHHHHH
Confidence 10 01224589999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCccChHHHHHHhhccccccCCC--CChHHHHHHHHHHcCCCCcceeecceeeeeeeccccccccccc
Q 003826 397 ISRSGFPTRMSHQKFARRYGFLLLESVAS--QDPLSVSVAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTRN 468 (793)
Q Consensus 397 i~r~Gyp~r~~~~~F~~RY~~L~~~~~~~--~d~~~~~~~il~~~~~~~~~~~vGkTkVFlr~~~~~~LE~~R~ 468 (793)
|++.|||+|++|.+|+.||++|++..++. .|+++.|+.||+.+++++.+|++|+|||||+.+++..||+.|.
T Consensus 604 i~r~Gyp~r~~~~~F~~ry~~L~~~~~~~~~~~~k~~~~~iL~~~~~~~~~~~iGkTkVFlk~~~~~~Le~~R~ 677 (677)
T smart00242 604 IRRAGFPYRLPFDEFLQRYRVLLPDTWPPWGGDAKEACEALLQSLGLDEDEYQLGKTKVFLRPGQLAELEELRE 677 (677)
T ss_pred HHHccccceecHHHHHHHHHHhCcccccccCCCHHHHHHHHHHhcCCCcccEEecCceEeECccHHHHHHhhcC
Confidence 99999999999999999999999976653 3689999999999999999999999999999999999998873
No 15
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=100.00 E-value=9e-113 Score=934.00 Aligned_cols=494 Identities=37% Similarity=0.638 Sum_probs=451.2
Q ss_pred CCCccCccccCCCccccCCcccHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhcCeeEEeeCCCCceeecCchHHHH
Q 003826 1 MSAKEYKYLRQSSCYSINGVDDAEQFRIVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNENHVEPVADEGLIT 80 (793)
Q Consensus 1 ~~~~~y~yL~~s~~~~~~~~dD~~~f~~~~~Al~~lg~~~~~~~~if~ilaaILhLGNi~F~~~~~~~~~~~~~~~~l~~ 80 (793)
+.|+.|.||+.++|+.++++||..+|++|+.||+++||.+++|+.||++||+|||||||+|.+. ++.+.|.+.+.++-
T Consensus 229 ~~pe~Y~Y~~~sg~~s~D~idd~kdfq~Tl~AM~vIGi~~~eQ~~v~rmva~IL~lGNIsF~Ee--~~~a~V~~~~~~~f 306 (1106)
T KOG0162|consen 229 QEPEYYVYLNASGCYSVDDIDDRKDFQETLHAMKVIGINQEEQDEVLRMVAGILHLGNISFIEE--GNYAAVSDKSVLEF 306 (1106)
T ss_pred CCchheeeeccccceeccccchHHHHHHHHHHheeccCChHHHHHHHHHHHHHHhccceeEEee--CCcceeccchHHHh
Confidence 4689999999999999999999999999999999999999999999999999999999999974 34677888999999
Q ss_pred HHHHhCCCHHHHHHHHccceeee----cCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCcceeE
Q 003826 81 VAKLIGCDIGELKLALSTRKMRV----GNDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSIS 156 (793)
Q Consensus 81 ~a~LLGv~~~~L~~~L~~~~i~~----~~e~i~~~lt~~qA~~~RdaLak~LY~~LF~wiV~~IN~~L~~~~~~~~~~Ig 156 (793)
.|.||||++..|.+.||.|.+.. ..+.+..+|+++||.+.||||||+||.+||||||++||.+|...+.....+||
T Consensus 307 ~ayLlgi~s~~l~~~Lt~R~M~s~~G~kr~~~~v~LNv~QA~~~RDAlakaiy~~lFD~lV~rvNkam~~~~~~~~~sIG 386 (1106)
T KOG0162|consen 307 PAYLLGIDSARLEEKLTSRIMESKWGGKREVIHVPLNVEQASYTRDALAKAIYARLFDWLVERVNKAMQAFKGSEEYSIG 386 (1106)
T ss_pred HHHHhcCCHHHHHHHHHHHHHhhcccccceeEEecccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccee
Confidence 99999999999999999999863 35889999999999999999999999999999999999999865545567999
Q ss_pred EeecCCCccCCCCChhHHHHHHhhHHHHHHHHHHhhHHHHHHHhhcCCcccccccCCchhHHHhhhc-CCCccccccccc
Q 003826 157 ILDIYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEK-KPLGLLSLLDEE 235 (793)
Q Consensus 157 ILDI~GFE~f~~NsfEQlcINyaNErLq~~f~~~~f~~eqeey~~EgI~~~~i~f~dN~~~ldlie~-kp~Gil~lLdee 235 (793)
||||||||+|++||||||||||.||||||.|++-+++.|||||.+|||.|++|.|.||.-++||||. .|.||+++|||.
T Consensus 387 iLDIYGFEIFe~N~FEQ~CINfVNEKLQQIFIeLTLKaEQEeYvrE~I~WTpIkYFnNKvVCDLIE~K~PPGims~ldD~ 466 (1106)
T KOG0162|consen 387 ILDIYGFEIFENNGFEQFCINFVNEKLQQIFIELTLKAEQEEYVREGIKWTPIKYFNNKVVCDLIENKRPPGIMSALDDV 466 (1106)
T ss_pred eEEeeeeeecccCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcccccchhhcCCeeeeehhhccCCchHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999995 589999999999
Q ss_pred cCC----CCCCcHHHHHHHHHHcCCCCccccCCCCCcEEEecCccccccccchhhhccccccHHHHHHHhhcCCchH-HH
Q 003826 236 STF----PNGTDLTFANKLKQHLNSNPCFRGERDKSFTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCSCHLP-QI 310 (793)
Q Consensus 236 ~~~----p~~tD~~f~~kl~~~~~~~~~~~~~~~~~F~I~HyaG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~~~~~-~l 310 (793)
|.- ..|.|.+|+++|...+++||+|.. +...|+|+||||+|+||++||.+||+|.|..|+++||.+|.++|+ .+
T Consensus 467 ~At~Ha~~~~aDqa~~qrLn~~~~s~phF~~-~s~~FvIkHYAGdVtYdi~G~~drNrD~L~~DlieLm~ts~~~Fl~sl 545 (1106)
T KOG0162|consen 467 CATAHADSEGADQALLQRLNKLFGSHPHFES-RSNGFVIKHYAGDVTYDIDGFCDRNRDVLFKDLIELMQTSENPFLKSL 545 (1106)
T ss_pred HHHhccccchhHHHHHHHHHHHhcCCCcccc-ccCceEEEEeccceeeecccccccchhHHHHHHHHHHhccchHHHHHh
Confidence 974 356799999999999999999975 467899999999999999999999999999999999999999976 57
Q ss_pred hhhcccccCCCCccCCCccCCCCCCCCccHHHHHHHHHHHHHHHHhccCCeeeeecCCCCCCCCCccchhHHHHHhhhhC
Q 003826 311 FASNMLSQSNKPVVGPLYKAGGADSQKLSVATKFKGQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCG 390 (793)
Q Consensus 311 f~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~f~~~L~~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~g 390 (793)
|+.....++ ....+|.+.+.+.|-+.|+++|..|+||||||||||+.+.|+.||...|.+|+.|+|
T Consensus 546 FPe~v~~ds--------------krRP~Tag~kIkkqANdLVeTLmKc~P~YIR~IKPNeTK~pnD~ee~~V~HQveYLG 611 (1106)
T KOG0162|consen 546 FPENVDADS--------------KRRPPTAGDKIKKQANDLVETLMKCQPHYIRCIKPNETKSPNDWEESRVKHQVEYLG 611 (1106)
T ss_pred Cchhhcccc--------------cCCCCCchhhHHhhHHHHHHHHHhcCcceeEeeCCCCCCCCccHHHHHHHHHHHhcc
Confidence 875543222 123589999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhcCCCCccChHHHHHHhhccccccCCCC--ChHHHHHHHHHHcCCCCcceeecceeeeeeec-ccccccccc
Q 003826 391 VLEVVRISRSGFPTRMSHQKFARRYGFLLLESVASQ--DPLSVSVAILHQFNILPEMYQVGYTKLFFRAG-QIGMLEDTR 467 (793)
Q Consensus 391 vle~vri~r~Gyp~r~~~~~F~~RY~~L~~~~~~~~--d~~~~~~~il~~~~~~~~~~~vGkTkVFlr~~-~~~~LE~~R 467 (793)
+-|.|||+|+||.+|..|+.|++||.+|.|.+++.| |.+++|+.||...++++++||+|.|+||++.. .+..||++|
T Consensus 612 LqENiRvRRAGfAYRr~F~kF~qRyailsp~t~~twqGD~~~av~~il~~~~m~~~qyQmG~tkVFiKnPEsLF~LEemR 691 (1106)
T KOG0162|consen 612 LQENIRVRRAGFAYRRAFDKFAQRYAILSPQTWPTWQGDEKQAVEHILRDVNMPSDQYQMGVTKVFIKNPESLFLLEEMR 691 (1106)
T ss_pred hhhheeehhhhhHHHHHHHHHHHHheecCcccccccccchHHHHHHHHHhcCCChhHhhccceeEEecChHHHHHHHHHH
Confidence 999999999999999999999999999999999876 88999999999999999999999999999975 589999999
Q ss_pred cccchh-hHhhhhhhcccccchhhcccccchhhhhhHHHHHHHHHHHH
Q 003826 468 NRTLHG-ILRVQSCFRGHQARLCLKELRRGIVALQSFIRGEKIRKEYA 514 (793)
Q Consensus 468 ~~~l~a-a~~IQ~~~Rg~~~R~~~~~~r~a~i~IQs~~Rg~~aRr~~~ 514 (793)
.+.... |.+||++||.|++|+.|.++|.-++.| .-|...||+|.
T Consensus 692 er~~d~~A~~IQkAWRrfv~rrky~k~ree~t~l---l~gKKeRRr~S 736 (1106)
T KOG0162|consen 692 ERKWDGMARRIQKAWRRFVARRKYEKMREEATKL---LLGKKERRRYS 736 (1106)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcchHHHHHHH
Confidence 998864 668999999988888888888655543 23556666553
No 16
>cd01379 MYSc_type_III Myosin motor domain, type III myosins. Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the
Probab=100.00 E-value=1.2e-110 Score=977.07 Aligned_cols=429 Identities=38% Similarity=0.657 Sum_probs=397.6
Q ss_pred CCccCccccCCCccccCCcc----cHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhcCeeEEeeCC---CCceeecC
Q 003826 2 SAKEYKYLRQSSCYSINGVD----DAEQFRIVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDN---ENHVEPVA 74 (793)
Q Consensus 2 ~~~~y~yL~~s~~~~~~~~d----D~~~f~~~~~Al~~lg~~~~~~~~if~ilaaILhLGNi~F~~~~~---~~~~~~~~ 74 (793)
++++|+||++++|..+++++ |+.+|+.|+.||++|||+++++..||+|||||||||||+|...++ .+.+.+.+
T Consensus 211 ~~~~~~yL~~~~~~~~~~~~~~~~~~~~f~~~~~al~~lg~~~~e~~~I~~iLaaILhLGNi~F~~~~~~~~~~~~~i~~ 290 (653)
T cd01379 211 ESKTPRYLQNEATRVVQDITSNKFYKDQFEQIEQCFRVIGFTDEEVGSVYRILAAILNLGDIEFGSVASEHQTDKSRVSN 290 (653)
T ss_pred CccccCccCCCCccccCCCccchhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceEEEeccccCCCcccccCC
Confidence 35689999999887777775 478999999999999999999999999999999999999987543 24577888
Q ss_pred chHHHHHHHHhCCCHHHHHHHHccceeeecCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCC----C
Q 003826 75 DEGLITVAKLIGCDIGELKLALSTRKMRVGNDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKR----R 150 (793)
Q Consensus 75 ~~~l~~~a~LLGv~~~~L~~~L~~~~i~~~~e~i~~~lt~~qA~~~RdaLak~LY~~LF~wiV~~IN~~L~~~~~----~ 150 (793)
.+.+..||.||||++++|.++|+++++.++|+.++++++++||.++||+|||+||++||+|||.+||.+|.+... .
T Consensus 291 ~~~l~~~A~LLgv~~~~L~~~L~~~~~~~~ge~i~~~~~~~qA~~~rdalak~lY~~LF~wiV~~IN~~l~~~~~~~~~~ 370 (653)
T cd01379 291 VAALENAASLLCIRSDELQEALTSHCVVTRGETIVRHNTVEKATDARDAMAKALYGRLFSWIVNRINSLLKHDRNASNSS 370 (653)
T ss_pred HHHHHHHHHHhCCCHHHHHHHhcccEEEeCCceeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999987532 2
Q ss_pred CcceeEEeecCCCccCCCCChhHHHHHHhhHHHHHHHHHHhhHHHHHHHhhcCCcccccccCCchhHHHhhhcCCCcccc
Q 003826 151 TGRSISILDIYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEKKPLGLLS 230 (793)
Q Consensus 151 ~~~~IgILDI~GFE~f~~NsfEQlcINyaNErLq~~f~~~~f~~eqeey~~EgI~~~~i~f~dN~~~ldlie~kp~Gil~ 230 (793)
...+||||||||||+|+.|||||||||||||+||++|++++|+.||++|.+|||+|+.|+|.||++|||||+++|.|||+
T Consensus 371 ~~~~IgiLDI~GFE~f~~NsfEQLcINyaNEkLQ~~f~~~vf~~Eq~eY~~EgI~~~~i~~~dN~~~ldli~~kp~Gil~ 450 (653)
T cd01379 371 DQLNVGILDIFGFENFKKNSFEQLCINIANEQIQYYFNQHIFAWEQQEYLNEGVDARLVEYEDNRPLLDMFLQKPLGLLA 450 (653)
T ss_pred ccceEEEEeccccccCCCCCHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcHHHHHhHccCCCcHHH
Confidence 35699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCCcHHHHHHHHHHcCCCCccccCC--CCCcEEEecCccccccccchhhhccccccHHHHHHHhhcCCchH
Q 003826 231 LLDEESTFPNGTDLTFANKLKQHLNSNPCFRGER--DKSFTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCSCHLP 308 (793)
Q Consensus 231 lLdee~~~p~~tD~~f~~kl~~~~~~~~~~~~~~--~~~F~I~HyaG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~~~~~ 308 (793)
+|||||++|+|||.+|++|++..+++ ++|..++ ...|+|+||||+|+|+++||++||+|.++.+++++|++|
T Consensus 451 lLdee~~~~~~td~~~~~kl~~~~~~-~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKNkD~l~~~~~~ll~~S----- 524 (653)
T cd01379 451 LLDEESRFPQATDQTLVEKFEDNLKS-KFFWRPKRVELSFGIHHYAGKVLYNASGFLEKNRDFLPADIVLLLRSS----- 524 (653)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHhcCC-CCccCCCCCCCceEEEEeceeEeecCCCHHHhccccccHHHHHHHHhC-----
Confidence 99999999999999999999998864 4554443 468999999999999999999999999999999999865
Q ss_pred HHhhhcccccCCCCccCCCccCCCCCCCCccHHHHHHHHHHHHHHHHhccCCeeeeecCCCCCCCCCccchhHHHHHhhh
Q 003826 309 QIFASNMLSQSNKPVVGPLYKAGGADSQKLSVATKFKGQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRC 388 (793)
Q Consensus 309 ~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~f~~~L~~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~ 388 (793)
+||+++|+.||+.||.+|.+|+||||||||||+.+.|+.||..+|++||||
T Consensus 525 -----------------------------~tv~~~fr~~l~~L~~~l~~t~~hfIRCIKPN~~k~~~~fd~~~V~~QLr~ 575 (653)
T cd01379 525 -----------------------------QTVASYFRYSLMDLLSKMVVGQPHFVRCIKPNEDRQAKKFDAEKVLKQLRY 575 (653)
T ss_pred -----------------------------cHHHHHHHHHHHHHHHHHhccCCceEEeeCCCcccCccccCHHHHHHHHHH
Confidence 479999999999999999999999999999999999999999999999999
Q ss_pred hChhHHHHHHhcCCCCccChHHHHHHhhccccccCC-CCChHHHHHHHHHHcCCCCcceeecceeeeeeecccccccccc
Q 003826 389 CGVLEVVRISRSGFPTRMSHQKFARRYGFLLLESVA-SQDPLSVSVAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTR 467 (793)
Q Consensus 389 ~gvle~vri~r~Gyp~r~~~~~F~~RY~~L~~~~~~-~~d~~~~~~~il~~~~~~~~~~~vGkTkVFlr~~~~~~LE~~R 467 (793)
+||+|+|+|+|.|||+|++|.+|+.||++|++.... ..+.++.|..||..+++ ++|++|+||||||.+++..||.+|
T Consensus 576 ~GvlE~iri~r~Gyp~r~~~~~F~~rY~~l~~~~~~~~~~~~~~~~~il~~~~~--~~~~~GktkvFlk~~~~~~le~~~ 653 (653)
T cd01379 576 TGILETARIRRQGFSHRILFANFIRRYCFLAYRFEEEPVSSPESCALILEKAKL--DNWALGKTKVFLKYYHVEQLNLMR 653 (653)
T ss_pred cchHHHHHHHHcCCCccccHHHHHHHHHHhccccccccCChHHHHHHHHHhCCC--CCEEecceEEEEecCHHHHHHhcC
Confidence 999999999999999999999999999999876543 34788999999998876 579999999999999999998875
No 17
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=100.00 E-value=2.1e-110 Score=988.17 Aligned_cols=463 Identities=45% Similarity=0.749 Sum_probs=420.3
Q ss_pred CCccCccccCCCccccCCcccHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhcCeeEEeeCCCCc--eeecCchHHH
Q 003826 2 SAKEYKYLRQSSCYSINGVDDAEQFRIVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNENH--VEPVADEGLI 79 (793)
Q Consensus 2 ~~~~y~yL~~s~~~~~~~~dD~~~f~~~~~Al~~lg~~~~~~~~if~ilaaILhLGNi~F~~~~~~~~--~~~~~~~~l~ 79 (793)
++++|+||++++|..++++||+++|++++.||++|||+++++..||+|||||||||||+|...++++. +.+.+.+.++
T Consensus 210 ~~~~y~yL~~~~~~~~~~~~d~~~f~~~~~al~~lg~~~~e~~~i~~iLaaILhLGni~f~~~~~~~~~~~~~~~~~~l~ 289 (679)
T cd00124 210 RPESYRYLNQGGCNDVDGIDDAEEFEELKEALKSLGFSEEEIESIFRILAAILHLGNIEFKSVGGEGQEAAEVKNTEVLS 289 (679)
T ss_pred CcccCeeeCCCCcccCCCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcCeeEEecCCCCcceeecCCHHHHH
Confidence 45789999999999889999999999999999999999999999999999999999999987655443 7788899999
Q ss_pred HHHHHhCCCHHHHHHHHccceeeecCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCcceeEEee
Q 003826 80 TVAKLIGCDIGELKLALSTRKMRVGNDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILD 159 (793)
Q Consensus 80 ~~a~LLGv~~~~L~~~L~~~~i~~~~e~i~~~lt~~qA~~~RdaLak~LY~~LF~wiV~~IN~~L~~~~~~~~~~IgILD 159 (793)
.+|.||||++++|.++|+++++.++|+.+.+++++++|...||+|||+||++||+|||.+||.+|.+.. ....+|||||
T Consensus 290 ~~a~LLgv~~~~L~~~l~~~~~~~~~~~~~~~~~~~~a~~~rdalak~lY~~lF~wiV~~iN~~l~~~~-~~~~~IgiLD 368 (679)
T cd00124 290 KAAELLGLDPEELEEALTYKVTKVGGEVITIPLTKEEAVDSRDSLAKALYSRLFDWIVSRINSSLKPKD-GRSLFIGILD 368 (679)
T ss_pred HHHHHhCCCHHHHHHHhhccEEEeCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCceeeEEe
Confidence 999999999999999999999999999999999999999999999999999999999999999998752 3567999999
Q ss_pred cCCCccCCCCChhHHHHHHhhHHHHHHHHHHhhHHHHHHHhhcCCcccccccCCchhHHHhhhcCCCccccccccccCCC
Q 003826 160 IYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEKKPLGLLSLLDEESTFP 239 (793)
Q Consensus 160 I~GFE~f~~NsfEQlcINyaNErLq~~f~~~~f~~eqeey~~EgI~~~~i~f~dN~~~ldlie~kp~Gil~lLdee~~~p 239 (793)
|||||+|+.|||||||||||||+||++|++++|+.||++|.+|||+|+.|+|.||++|||||+++|.|||++|||||++|
T Consensus 369 i~GFE~f~~NsfEQLcINy~NEkLq~~f~~~~f~~eq~~y~~EgI~~~~i~~~dn~~~ldli~~~~~Gi~~lLdee~~~~ 448 (679)
T cd00124 369 IFGFEIFEKNSFEQLCINYANEKLQQFFNQHVFKLEQEEYQEEGIDWESIDFTDNQEVIDLIEKKPGGLLSLLDEECLFP 448 (679)
T ss_pred ccccccCCCCCHHHHhcccchHHHHHHHHHHHHHHHHHHHHhcCCCccCCcCCCCHHHHHHHhcCCCcHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHcCCCCccccC---CCCCcEEEecCccccccccchhhhccccccHHHHHHHhhcCCchH-HHhhhcc
Q 003826 240 NGTDLTFANKLKQHLNSNPCFRGE---RDKSFTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCSCHLP-QIFASNM 315 (793)
Q Consensus 240 ~~tD~~f~~kl~~~~~~~~~~~~~---~~~~F~I~HyaG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~~~~~-~lf~~~~ 315 (793)
++||.+|++||++.+++|++|..+ .+..|+|+||||+|+|+++||++||+|.++++++++|++|+++++ .+|....
T Consensus 449 ~~~d~~~~~kl~~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~v~gfleKN~D~l~~~~~~ll~~S~~~~i~~lf~~~~ 528 (679)
T cd00124 449 KGTDETFLEKLNNKLKSNNAFYPAKKNAPTEFTIKHYAGDVTYDARGFLEKNKDVLSPELVSLLKSSSNPFIRELFESEL 528 (679)
T ss_pred CCCHHHHHHHHHHHhcCCcccccCCCCCCCceEEEeeceeEEecCCCHHHhcCCcccHHHHHHHHhCCcHHHHHHhcccc
Confidence 999999999999999999986332 256999999999999999999999999999999999999999976 5775433
Q ss_pred cccCCCCccCCCccCCCCCCCCccHHHHHHHHHHHHHHHHhccCCeeeeecCCCCCCCCCccchhHHHHHhhhhChhHHH
Q 003826 316 LSQSNKPVVGPLYKAGGADSQKLSVATKFKGQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVV 395 (793)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~tv~~~f~~~L~~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~v 395 (793)
...+..+.. ....+....+.+||+++|+.||+.||++|++|+||||||||||+.+.|+.||..+|++||||+||+|+|
T Consensus 529 ~~~~~~~~~--~~~~~~~~~~~~tv~~~f~~qL~~L~~~L~~t~~hfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvlE~i 606 (679)
T cd00124 529 SKTGNSSTG--STSSKGKKKKGQTVGSQFRTSLDALMATLNSTEPHFIRCIKPNEEKKPNAFDSGKVLQQLRYLGILETI 606 (679)
T ss_pred ccccccccc--cccccccccCCCcHHHHHHHHHHHHHHHHhcCCCeEEEEECCCcccCCCccChHHHHHHHHHhchHHHH
Confidence 211100000 011112234568999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCccChHHHHHHhhccccccCCCC-ChHHHHHHHHHHcCCCCcceeecceeeeeeecccccccccc
Q 003826 396 RISRSGFPTRMSHQKFARRYGFLLLESVASQ-DPLSVSVAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTR 467 (793)
Q Consensus 396 ri~r~Gyp~r~~~~~F~~RY~~L~~~~~~~~-d~~~~~~~il~~~~~~~~~~~vGkTkVFlr~~~~~~LE~~R 467 (793)
+|+|.|||+|++|.+|+.||++|++...+.. .....|..+|..+++++++|++|+||||||.+++..||.+|
T Consensus 607 rirr~Gyp~R~~~~eF~~rY~~L~~~~~~~~~~~~~~~~~il~~~~~~~~~~~vGkTkVFlr~~~~~~LE~~r 679 (679)
T cd00124 607 RIRRLGFSVRIPFDEFLSRYRFLAPDLLEKVSLTKKQVECLLELLGLPKDEWQVGKTKVFLKEGQLSELEKMR 679 (679)
T ss_pred HHHHccCCceeeHHHHHHHHHHhCcccccccCCcHHHHHHHHHhcCCCccCEEecCCeEEECcCHHHHHhccC
Confidence 9999999999999999999999998876543 22334999999999999999999999999999999999875
No 18
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=100.00 E-value=9.9e-109 Score=1015.43 Aligned_cols=508 Identities=40% Similarity=0.657 Sum_probs=459.7
Q ss_pred CCccCccccCCCccccCCcccHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhcCeeEEeeCCCCceeecCchHHHHH
Q 003826 2 SAKEYKYLRQSSCYSINGVDDAEQFRIVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNENHVEPVADEGLITV 81 (793)
Q Consensus 2 ~~~~y~yL~~s~~~~~~~~dD~~~f~~~~~Al~~lg~~~~~~~~if~ilaaILhLGNi~F~~~~~~~~~~~~~~~~l~~~ 81 (793)
.+.+|.|+.++.. .+||+||+++|+.|..||++|||+++++.+||+|+|||||||||.|....+.+.+.+.+.+.++.+
T Consensus 299 ~~~~Y~f~~~~~~-~i~g~dd~eef~~t~~a~~ilgfs~~E~~~~~~i~sailhlGn~~f~~~~~~~qa~~~~~~~a~ka 377 (1930)
T KOG0161|consen 299 NVKDYKFLSNGES-TIPGVDDAEEFQETDEAMDILGFSEEEKISIFRIVSAILHLGNIKFKQEPREEQAEFDNTEVADKA 377 (1930)
T ss_pred cchhhhhhccccC-CCCCcchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcchhhhccccccccCCCCchHHHHH
Confidence 3789999999865 999999999999999999999999999999999999999999999998767788999999999999
Q ss_pred HHHhCCCHHHHHHHHccceeeecCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCcceeEEeecC
Q 003826 82 AKLIGCDIGELKLALSTRKMRVGNDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIY 161 (793)
Q Consensus 82 a~LLGv~~~~L~~~L~~~~i~~~~e~i~~~lt~~qA~~~RdaLak~LY~~LF~wiV~~IN~~L~~~~~~~~~~IgILDI~ 161 (793)
|.||||++.+|..+|+++.+++|++.+.+..+.+|+..+..+|||++|+|||.|||.+||.+|... .+...|||||||+
T Consensus 378 ~~llg~~~~~~~~al~~priKvg~e~v~k~q~~~q~~~~v~alAk~lYerlF~wlV~riN~sld~~-~~~~~fIgvLDia 456 (1930)
T KOG0161|consen 378 CHLLGINVEEFLKALLRPRIKVGREWVSKAQNVEQVLFAVEALAKALYERLFGWLVKRINKSLDSK-QQRDYFIGVLDIA 456 (1930)
T ss_pred HHHcCCCHHHHHHHhcccceeccchhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-cccCCcceeeeec
Confidence 999999999999999999999999999999999999999999999999999999999999999976 5667899999999
Q ss_pred CCccCCCCChhHHHHHHhhHHHHHHHHHHhhHHHHHHHhhcCCcccccccC-CchhHHHhhhcCCCccccccccccCCCC
Q 003826 162 GFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFE-DNKDCLNLFEKKPLGLLSLLDEESTFPN 240 (793)
Q Consensus 162 GFE~f~~NsfEQlcINyaNErLq~~f~~~~f~~eqeey~~EgI~~~~i~f~-dN~~~ldlie~kp~Gil~lLdee~~~p~ 240 (793)
|||+|+.||||||||||+||+|||+||+|||.+||++|.+|||.|.+|+|. |-++|||||++ |.||+++|||||.+|+
T Consensus 457 GFEIfe~nSFEQLciNytnEkLQqfFnh~mFvlEqeeY~~EgIew~fidfG~Dlq~~idLIEk-p~Gi~slLdEEc~~Pk 535 (1930)
T KOG0161|consen 457 GFEIFEFNSFEQLCINYTNEKLQQFFNHHMFVLEQEEYQREGIEWDFIDFGLDLQPTIDLIEK-PMGILSLLDEECVVPK 535 (1930)
T ss_pred cccccCcCCHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHhCCceeeeccccchhhhHHHHhc-hhhHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999999999999997 89999999998 6799999999999999
Q ss_pred CCcHHHHHHHHHHc-CCCCccccCC----CCCcEEEecCccccccccchhhhccccccHHHHHHHhhcCCch-HHHhhhc
Q 003826 241 GTDLTFANKLKQHL-NSNPCFRGER----DKSFTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCSCHL-PQIFASN 314 (793)
Q Consensus 241 ~tD~~f~~kl~~~~-~~~~~~~~~~----~~~F~I~HyaG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~~~~-~~lf~~~ 314 (793)
+||.+|++||...+ ++||.|.+++ +.+|.|.||||+|.|++.||++||+||++..++.+|..|++++ ..+|.+.
T Consensus 536 Atd~tf~~kL~~~~~gk~~~f~~~k~~~~~~~F~l~HyaG~V~Y~~~~WL~Knkdpln~~v~~ll~~s~~~~v~~l~~~~ 615 (1930)
T KOG0161|consen 536 ATDKTFLEKLCDQHLGKHPKFQKPKGKKAEAHFALVHYAGTVDYNVDGWLEKNKDPLNDNVVSLLKQSTNKLVSSLFQDY 615 (1930)
T ss_pred CccchHHHHHHHHhhccCccccCcccccchhhhheeeecceeccCccchhhcCCCCchHHHHHHHHhcccHHHHHHhhhh
Confidence 99999999998877 8999998884 4699999999999999999999999999999999999999875 5788762
Q ss_pred ccccCCCCccCCCccCCCCCCCCccHHHHHHHHHHHHHHHHhccCCeeeeecCCCCCCCCCccchhHHHHHhhhhChhHH
Q 003826 315 MLSQSNKPVVGPLYKAGGADSQKLSVATKFKGQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEV 394 (793)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~tv~~~f~~~L~~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~ 394 (793)
..... ....+.. ...+..+.+.||+..++.||+.||.+|.+|.|||||||.||+.+.|+.+|.++|+.||+|.||||.
T Consensus 616 ~~~~~-~~~~~~~-~~~~K~g~F~Tvs~~~keql~~Lm~~l~~T~phFvRCiIPn~~K~~g~ld~~lvl~QLrcngVLEg 693 (1930)
T KOG0161|consen 616 AGAAA-AAKGGEA-LKKTKKGSFRTVSQLYKEQLNKLMTTLRSTHPHFVRCIIPNEEKKPGKLDAPLVLNQLRCNGVLEG 693 (1930)
T ss_pred hccch-hhhhhhh-hcccCCcchhhHHHHHHHHHHHHHHHhccCCCceeEEeccCccccccccCHHHHHHHhhccCcHHH
Confidence 21110 0000100 012234467899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCccChHHHHHHhhccccccCCC--CChHHHHHHHHHHcCCCCcceeecceeeeeeecccccccccccccch
Q 003826 395 VRISRSGFPTRMSHQKFARRYGFLLLESVAS--QDPLSVSVAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTRNRTLH 472 (793)
Q Consensus 395 vri~r~Gyp~r~~~~~F~~RY~~L~~~~~~~--~d~~~~~~~il~~~~~~~~~~~vGkTkVFlr~~~~~~LE~~R~~~l~ 472 (793)
|||+|.|||.|++|.+|..||.++.|...+. .|.+..|+.++..+.++.+.|++|.|||||+.|++..||++|...+.
T Consensus 694 IRicR~GfPnr~~~~eFrqRy~lla~~~~~~~~~d~k~~~~~~~~~l~~d~~lyriG~tKvFfkaGvla~LEe~Rd~~ls 773 (1930)
T KOG0161|consen 694 IRICRQGFPNRMPFQEFRQRYELLAADEPKKGFSDGKKACEKILEELLLDKNLYRIGHTKVFFKAGVLAHLEEMRDEKLS 773 (1930)
T ss_pred HHHHHhhCccccchHHHHHhHHhhhhhhccccccccchhHHHHHHHHhcccceEeecceeeeehHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999444443333 47889999999999999999999999999999999999999987776
Q ss_pred hhHhhhhhhcccccchhhcccccchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHH
Q 003826 473 GILRVQSCFRGHQARLCLKELRRGIVALQSFIRGEKIRKEYALVLQRHRAAVVIQRQIKSRVAR 536 (793)
Q Consensus 473 aa~~IQ~~~Rg~~~R~~~~~~r~a~i~IQs~~Rg~~aRr~~~~l~~~~~AAi~IQ~~~R~~~~R 536 (793)
.+ ++.+|+.+|||++|+.|.+...+..|+.+||..+|.|...
T Consensus 774 ~i----------------------i~~fQA~~Rg~l~r~~~~kr~~~~~ai~~iQ~N~r~~~~l 815 (1930)
T KOG0161|consen 774 QI----------------------ITLFQAAIRGYLARKEFKKRLQQLDAIKVIQRNIRAYLKL 815 (1930)
T ss_pred HH----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 54 4667778888888888888877888999999999888643
No 19
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the
Probab=100.00 E-value=1.2e-106 Score=955.08 Aligned_cols=450 Identities=26% Similarity=0.401 Sum_probs=391.7
Q ss_pred cccCCcccHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhcCeeEEeeCCCCceeecCchHHHHHHHHhCCCHHHHHH
Q 003826 15 YSINGVDDAEQFRIVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLIGCDIGELKL 94 (793)
Q Consensus 15 ~~~~~~dD~~~f~~~~~Al~~lg~~~~~~~~if~ilaaILhLGNi~F~~~~~~~~~~~~~~~~l~~~a~LLGv~~~~L~~ 94 (793)
...+++||+++|+.|+.||++|||+++++..||+|||||||||||+|... .+.+.+.+.+.++.||.||||+.++|.+
T Consensus 225 ~~~d~~~D~~~f~~~~~Al~~lGfs~~e~~~If~iLaaILhLGNi~f~~~--~~~~~~~~~~~~~~vA~LLgv~~~~L~~ 302 (767)
T cd01386 225 KPEDKQKAAIDFSRLQQAMEVLGISEGEQRAIWRVLAAIYHLGAAGATKV--AGRKQFARPEWAQKAAELLGCPLEELSS 302 (767)
T ss_pred CCcCcccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCceeeec--CCccccCCHHHHHHHHHHhCCCHHHHHH
Confidence 34678999999999999999999999999999999999999999999862 2346778889999999999999999999
Q ss_pred HHccceeeecCce-------------EEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCcceeEEeecC
Q 003826 95 ALSTRKMRVGNDT-------------IVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIY 161 (793)
Q Consensus 95 ~L~~~~i~~~~e~-------------i~~~lt~~qA~~~RdaLak~LY~~LF~wiV~~IN~~L~~~~~~~~~~IgILDI~ 161 (793)
+|+++++..+++. +...+++.+|.++||+|||+||++||+|||.+||.+|.+.. ....+|||||||
T Consensus 303 al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~rdalaK~lY~rLF~wiV~~IN~~l~~~~-~~~~~IgiLDIf 381 (767)
T cd01386 303 ATFKHTLRGGINQMTTGPQRPGLSDTETSSGLKMTAVECLEGMASGLYSELFAAVVSLINRSISSSH-HSIASIMLVDTP 381 (767)
T ss_pred HhcccEEeecceeeeccccccccccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-CCCcEEEEEecc
Confidence 9999888766432 33467889999999999999999999999999999998754 345799999999
Q ss_pred CCccCCC------CChhHHHHHHhhHHHHHHHHHHhhHHHHHHHhhcCCccccccc-CCchhHHHhhhcCC---------
Q 003826 162 GFESFDR------NSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDF-EDNKDCLNLFEKKP--------- 225 (793)
Q Consensus 162 GFE~f~~------NsfEQlcINyaNErLq~~f~~~~f~~eqeey~~EgI~~~~i~f-~dN~~~ldlie~kp--------- 225 (793)
|||+|++ |||||||||||||+|||+||+++|+.||++|.+|||+|+.+++ .||++|||||+++|
T Consensus 382 GFE~f~~n~~~~~NsfEQLcINyaNEkLQq~f~~~vF~~Eq~eY~~EGI~~~~~~~~~dn~~~i~lid~~p~~~~~~~~~ 461 (767)
T cd01386 382 GFQNPASQGKDRAATFEELCHNYLQERLQLLFHHRTFVQPLERYAEEGVEVEFDLAEPSPGTTVALVDQAPQQVVVPAGL 461 (767)
T ss_pred cccccccccccCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCccccccCCCchhhHHHhhcccccccccchh
Confidence 9999984 8999999999999999999999999999999999999986655 69999999999865
Q ss_pred -----CccccccccccCCCCCCcHHHHHHHHHHcCCCCccccC--------CCCCcEEEecCcc--ccccccchhhhccc
Q 003826 226 -----LGLLSLLDEESTFPNGTDLTFANKLKQHLNSNPCFRGE--------RDKSFTVSHYAGE--VIYDTTGFLEKNRD 290 (793)
Q Consensus 226 -----~Gil~lLdee~~~p~~tD~~f~~kl~~~~~~~~~~~~~--------~~~~F~I~HyaG~--V~Y~~~gfleKN~D 290 (793)
.|||++|||||++|++||++|++||++++++|++|... .+..|+|+||||+ |+|++.||++||+|
T Consensus 462 ~~~~~~GIl~lLDEec~~p~~tD~~f~~kl~~~~~~~~~~~~~~~~~~~~~~~~~F~I~HyAG~~~V~Y~~~gfleKNkD 541 (767)
T cd01386 462 RAEDARGLLWLLDEEALVPGSSDDTFLERLFAAYGDRETRETGLSRLRTCEGPLQFVLFHLLGTNPVLYDVTGWLRRAKP 541 (767)
T ss_pred hccCCCchhhhhhHhhcCCCCcHHHHHHHHHHHhccCCCcccCccccccCCCCCcEEEEEcCCCCceEecCCCHHHhcCC
Confidence 59999999999999999999999999999988887541 2358999999995 99999999999999
Q ss_pred cc-cHHHHHHHhhcCCchH-HHhhhccccc-----C--------CCCccC-CC-ccC---CCCCCCCccHHHHHHHHHHH
Q 003826 291 LL-HLDSIELLSSCSCHLP-QIFASNMLSQ-----S--------NKPVVG-PL-YKA---GGADSQKLSVATKFKGQLFQ 350 (793)
Q Consensus 291 ~l-~~~~~~ll~~S~~~~~-~lf~~~~~~~-----~--------~~~~~~-~~-~~~---~~~~~~~~tv~~~f~~~L~~ 350 (793)
.+ +.+++++|++|+++++ .+|....... + ..+... +. ++. +....++.||+++|+.||+.
T Consensus 542 ~~~~~~~~~ll~~S~~~~i~~lF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~tv~~qFk~qL~~ 621 (767)
T cd01386 542 NPAALNAPQLLQDSKREEINSLFQGRAGLAPVCLGAGAGLEGTSQQALRRSSSIRRTFTSSTAAVKRKSPCVQVKLQVDA 621 (767)
T ss_pred CCChHHHHHHHHhCCcHHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHH
Confidence 65 6899999999999865 6886432100 0 000000 00 000 01123457999999999999
Q ss_pred HHHHHhccCCeeeeecCCCCCCC----------------------CCccchhHHHHHhhhhChhHHHHHHhcCCCCccCh
Q 003826 351 LMQRLESTTPHFIRCIKPNNFQS----------------------PGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSH 408 (793)
Q Consensus 351 Lm~~L~~t~~hfIrCIkPN~~~~----------------------p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~ 408 (793)
||++|++|+||||||||||+.+. |+.||..+|++||||+||||+|||+|+|||+|++|
T Consensus 622 Lm~~L~~t~phfIRCIKPN~~k~~~~~~~~~~~~~~~~~~~~~~~p~~fd~~~V~~QLr~~GvlE~iri~r~Gfp~R~~~ 701 (767)
T cd01386 622 LIDTLRRSGLHFVHCYLPQHNGGKAMARTASPSPQQSEDNGVAAEPLALDIPLLRSQLRGSQILEAARLHRLGFPISVPL 701 (767)
T ss_pred HHHHHhccCCeeEEEeCccccccccccccccccccccccccccccccccCHHHHHHHHHhcccHHHHHHHhcCCcccccH
Confidence 99999999999999999999874 78999999999999999999999999999999999
Q ss_pred HHHHHHhhccccccCC-------CCChHHHHHHHHHHcCCCCcceeecceeeeeeecccccccccc
Q 003826 409 QKFARRYGFLLLESVA-------SQDPLSVSVAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTR 467 (793)
Q Consensus 409 ~~F~~RY~~L~~~~~~-------~~d~~~~~~~il~~~~~~~~~~~vGkTkVFlr~~~~~~LE~~R 467 (793)
.+|+.||++|.+..++ ..|+++.|..||..+++++++|++|+||||||.+++..||+.|
T Consensus 702 ~~F~~RY~~L~~~~~~~~~~~~~~~d~r~~~~~il~~~~~~~~~~~iGkTKVFlr~~~~~~LE~~R 767 (767)
T cd01386 702 GEFVRRFGLLAEGLTKKVGGAGGGADERAAVEEILENLELDKSSYRIGHSQVFFRAGVLSRLEAQR 767 (767)
T ss_pred HHHHHHHHhhChhhcccccccccCCCHHHHHHHHHHHcCCCcceEEeecceEEecccHHHHHhccC
Confidence 9999999999886543 2488999999999999999999999999999999999999875
No 20
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=100.00 E-value=2.2e-106 Score=963.93 Aligned_cols=455 Identities=46% Similarity=0.802 Sum_probs=395.9
Q ss_pred CCccCccccCCCccccCCcccHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhcCeeEEeeCCCCceeecCchHHHHH
Q 003826 2 SAKEYKYLRQSSCYSINGVDDAEQFRIVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNENHVEPVADEGLITV 81 (793)
Q Consensus 2 ~~~~y~yL~~s~~~~~~~~dD~~~f~~~~~Al~~lg~~~~~~~~if~ilaaILhLGNi~F~~~~~~~~~~~~~~~~l~~~ 81 (793)
++++|+||++++|..+++.||+.+|+.++.||++|||+++++..||+|||||||||||+|...++++.+.+.+.+.++.|
T Consensus 213 ~~~~~~yL~~~~~~~~~~~~d~~~f~~l~~al~~lg~~~~e~~~I~~iLaaILhLGni~F~~~~~~~~~~~~~~~~l~~~ 292 (689)
T PF00063_consen 213 DASDYRYLNQSGCSTIPGIDDAEEFQELKDALKTLGFSDEEIDDIFRILAAILHLGNIEFVEDESDESAEVENSEELQKA 292 (689)
T ss_dssp -GGGSTTCCTTSSSSBTTCTHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTTSSEEEETTSSSEEESTSHHHHHH
T ss_pred ccccccceecccccccCCccCHHHhhhhhhhhccccCchhHHHHHHHHHHHHhhhccccccccccccceeechHHHHHHh
Confidence 57899999999999999999999999999999999999999999999999999999999999887777889999999999
Q ss_pred HHHhCCCHHHHHHHHccceeeecCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCcceeEEeecC
Q 003826 82 AKLIGCDIGELKLALSTRKMRVGNDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIY 161 (793)
Q Consensus 82 a~LLGv~~~~L~~~L~~~~i~~~~e~i~~~lt~~qA~~~RdaLak~LY~~LF~wiV~~IN~~L~~~~~~~~~~IgILDI~ 161 (793)
|.||||++++|.++||++++.+++|.+++++++++|.++||+|||+||++||+|||++||.+|++.......+|||||||
T Consensus 293 a~LLgv~~~~L~~~l~~~~~~~~~e~~~~~~~~~~a~~~rdalak~LY~~LF~wIV~~iN~~L~~~~~~~~~~IgILDi~ 372 (689)
T PF00063_consen 293 AELLGVDSEELEKALTTRTIKVGGETVTKPLSVEQASDARDALAKALYSRLFDWIVERINSALSPSESENSSSIGILDIF 372 (689)
T ss_dssp HHHTTS-HHHHHHHHHSEEEESTTSEEEEE-BHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--SS-S-SEEEEEEEEE
T ss_pred hhhcCCCHHHHHHHHhhccccccccccccccchhhhhhhhhhhhhhhhhHHHHHHHHhhhhccccccccccccCcccCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999998764567899999999
Q ss_pred CCccCCCCChhHHHHHHhhHHHHHHHHHHhhHHHHHHHhhcCCccccccc-CCchhHHHhhhcCCCccccccccccCCCC
Q 003826 162 GFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDF-EDNKDCLNLFEKKPLGLLSLLDEESTFPN 240 (793)
Q Consensus 162 GFE~f~~NsfEQlcINyaNErLq~~f~~~~f~~eqeey~~EgI~~~~i~f-~dN~~~ldlie~kp~Gil~lLdee~~~p~ 240 (793)
|||+|..|||||||||||||+||++|++++|+.||++|.+|||+|+.++| .||++|||||+++|.|||++|||||.+|+
T Consensus 373 GFE~~~~N~fEQLciNyanErLq~~f~~~~f~~e~~~y~~EgI~~~~i~~~~dn~~~ldLi~~~~~Gil~lLdee~~~~~ 452 (689)
T PF00063_consen 373 GFENFSVNSFEQLCINYANERLQQFFNQHIFKSEQEEYKEEGIDWPFIDFNPDNQPCLDLIEKKPKGILSLLDEECLLPR 452 (689)
T ss_dssp -B---SSB-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCSCS-GCGHHHHHHHHHHSSTTSHHHHHHHHCTSTT
T ss_pred ccccccccccccceeeeccccccceeeeecccccccccccccccccccccccCchhhhhhhccccCCHHHHhhhhhhccc
Confidence 99999999999999999999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHc-CCCCccccC------CCCCcEEEecCccccccccchhhhccccccHHHHHHHhhcCCchH-HHhh
Q 003826 241 GTDLTFANKLKQHL-NSNPCFRGE------RDKSFTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCSCHLP-QIFA 312 (793)
Q Consensus 241 ~tD~~f~~kl~~~~-~~~~~~~~~------~~~~F~I~HyaG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~~~~~-~lf~ 312 (793)
++|.+|++++.+.+ ++|+.|.++ .+..|+|+||||+|.|++.||++||+|.++++++++|++|+++++ .+|+
T Consensus 453 ~sd~~fl~kl~~~~~~~~~~~~~~~~~~~~~~~~F~I~HyaG~V~Y~v~gfleKNrD~l~~~~~~ll~~S~n~~v~~lf~ 532 (689)
T PF00063_consen 453 GSDESFLEKLLKRHSGKHPSFVKPRFSRSTSKSSFTIKHYAGDVTYDVEGFLEKNRDPLSQDFVSLLRSSTNSFVSSLFS 532 (689)
T ss_dssp S-HHHHHHHHHHHHTTTSTTEECTSSSTSSTTSCEEEEETTEEEEEE-TTHHHHHHE-S-HHHHHHHHTSSSHHHHHHTH
T ss_pred chhhHHHHHHHhhcccCCCcccccccccccCCCceEeecccCcceeccccccccccchHHHHHHHHHHhCcCcccccccc
Confidence 99999999999999 888988665 357999999999999999999999999999999999999999865 6786
Q ss_pred hcccccCCCC--------ccCCCccCCCCCCCCccHHHHHHHHHHHHHHHHhccCCeeeeecCCCCCCCCCccchhHHHH
Q 003826 313 SNMLSQSNKP--------VVGPLYKAGGADSQKLSVATKFKGQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQ 384 (793)
Q Consensus 313 ~~~~~~~~~~--------~~~~~~~~~~~~~~~~tv~~~f~~~L~~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~ 384 (793)
.........+ ..+......+...+..||+++|+.||+.||+.|++|+||||||||||+.+.|+.||..+|.+
T Consensus 533 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~qf~~sL~~L~~~L~~t~~hfIrCIkPN~~~~~~~FD~~~V~~ 612 (689)
T PF00063_consen 533 SEATATSSSSSSLSRRSSSSSTQSRSSGSKKKKSTVSSQFRSSLDELMDTLRSTQPHFIRCIKPNDQKKPNQFDSKLVLR 612 (689)
T ss_dssp SHHH---S-S-S-BTTTTCCCTTSSCCCGGTCSSBHHHHHHHHHHHHHHHHCTSEEEEEEEE-SSSS--TT---HHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccHHHHHhhhhhcccceEEEeccccccccccccchheeh
Confidence 5442100000 00011112222345689999999999999999999999999999999999999999999999
Q ss_pred HhhhhChhHHHHHHhcCCCCccChHHHHHHhhccccccCC-----CCChHHHHHHHHHHcCCCCcceeecceeeeee
Q 003826 385 QLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFLLLESVA-----SQDPLSVSVAILHQFNILPEMYQVGYTKLFFR 456 (793)
Q Consensus 385 QLr~~gvle~vri~r~Gyp~r~~~~~F~~RY~~L~~~~~~-----~~d~~~~~~~il~~~~~~~~~~~vGkTkVFlr 456 (793)
||+|+||+|+++|++.|||+|++|.+|++||++|++...+ ..++++.|+.+|+.+++++++|++|+||||||
T Consensus 613 QLr~~gile~vri~~~Gyp~r~~~~eF~~RY~~L~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~iG~TkVFLk 689 (689)
T PF00063_consen 613 QLRYSGILETVRIRRQGYPVRLTFDEFLRRYKCLLPSSSSSSDSSKEDDKEACEALLEQLDLESSDYQIGKTKVFLK 689 (689)
T ss_dssp HHHHTTHHHHHHHHHCSSSEEEEHHHHHHHHGGGSTTCSHSS--HCSSHHHHHHHHHHHTTSEGTCEEEESSEEEEC
T ss_pred hhhhhhhhhhhhhhhcccceecchhhhhhhhceechhhcccccccCCCHHHHHHHHHHhCCCCccCEEECCcEEEEC
Confidence 9999999999999999999999999999999999998764 35899999999999999999999999999996
No 21
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=100.00 E-value=2.1e-101 Score=845.08 Aligned_cols=520 Identities=33% Similarity=0.554 Sum_probs=439.2
Q ss_pred CCccCccccCCCcc---------------------------ccCCcccHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHH
Q 003826 2 SAKEYKYLRQSSCY---------------------------SINGVDDAEQFRIVVEALDIVHVSKEDQESVFAMLAAVL 54 (793)
Q Consensus 2 ~~~~y~yL~~s~~~---------------------------~~~~~dD~~~f~~~~~Al~~lg~~~~~~~~if~ilaaIL 54 (793)
.|++|+||+.| |. .-|-+||..+|+.+..||..+|++++|+..||+++||||
T Consensus 267 ~pd~f~YL~rG-~t~yFan~~t~~ki~~nr~S~~~~~~~~~kD~iidD~~dF~rl~~Al~~~Glsd~Ekl~i~s~vA~vL 345 (1259)
T KOG0163|consen 267 KPDDFRYLKRG-CTQYFANAKTEQKIPGNRKSKNHQQKGSLKDPIIDDYQDFHRLEKALKLLGLSDTEKLFIWSTVAAVL 345 (1259)
T ss_pred CchhhhHHhcc-hhhhccCcchhhcCcccccCccccccCcccCcccccHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Confidence 58899999974 42 122379999999999999999999999999999999999
Q ss_pred HhcCeeEEeeCC--CCceee--cCchHHHHHHHHhCCCHHHHHHHHccceeee-----cCceEEecCCHHHHHHHHHHHH
Q 003826 55 WLGNVSFTVIDN--ENHVEP--VADEGLITVAKLIGCDIGELKLALSTRKMRV-----GNDTIVQNLTLSQATDTRDALA 125 (793)
Q Consensus 55 hLGNi~F~~~~~--~~~~~~--~~~~~l~~~a~LLGv~~~~L~~~L~~~~i~~-----~~e~i~~~lt~~qA~~~RdaLa 125 (793)
|||||+|++..+ .+.|.+ .+..+|..+|+|||++.++|...||.|.+.+ .|..|.+||.+.+|..+|||||
T Consensus 346 HLGNieFEE~~ddsrGGC~v~n~seqsL~~~a~LLGld~~elr~~L~aRvMqtt~GG~kGTvIrVPLK~~eA~n~RDALa 425 (1259)
T KOG0163|consen 346 HLGNIEFEEIPDDSRGGCQVSNGSEQSLTIAAELLGLDQTELRTGLCARVMQTTKGGFKGTVIRVPLKIHEASNARDALA 425 (1259)
T ss_pred HccccchhcccCcCCCceecccCchhhHHHHHHHhCCCHHHHHHHHHHHHHHhccCCccceEEEeeccHHhhcchHHHHH
Confidence 999999987643 234544 4557899999999999999999999998863 4678999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhccCCCCCcceeEEeecCCCccCCCCChhHHHHHHhhHHHHHHHHHHhhHHHHHHHhhcCCc
Q 003826 126 KSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGID 205 (793)
Q Consensus 126 k~LY~~LF~wiV~~IN~~L~~~~~~~~~~IgILDI~GFE~f~~NsfEQlcINyaNErLq~~f~~~~f~~eqeey~~EgI~ 205 (793)
|++|++||||||.+||+++.... +..+||||||.|||.|.+|||||||||||||+||+|||+.|++.|||.|+.||+.
T Consensus 426 KaiYSkLFD~lV~~iNqsiPFe~--St~fiGVLDiAGFEyf~~NSFEQFCINyCNEKLQ~FFNerILkeEQElYekEGLn 503 (1259)
T KOG0163|consen 426 KAIYSKLFDWLVGRINQSIPFEK--STFFIGVLDIAGFEYFAVNSFEQFCINYCNEKLQKFFNERILKEEQELYEKEGLN 503 (1259)
T ss_pred HHHHHHHHHHHHHHhhccccccc--ccceeEEEeeccceeeecccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999996543 4679999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCchhHHHhhhcCCCccccccccccCCCCCCcHHHHHHHHHHcCCCCccccCC------------CCCcEEEec
Q 003826 206 WAKVDFEDNKDCLNLFEKKPLGLLSLLDEESTFPNGTDLTFANKLKQHLNSNPCFRGER------------DKSFTVSHY 273 (793)
Q Consensus 206 ~~~i~f~dN~~~ldlie~kp~Gil~lLdee~~~p~~tD~~f~~kl~~~~~~~~~~~~~~------------~~~F~I~Hy 273 (793)
.+.|.|.||++||+|||.|..|||.|||||.++|+.++..|....++.+++|-....|| +..|.|+||
T Consensus 504 v~ei~f~DNqDcIeL~E~K~~GifdlLDEEaklP~~s~qhFT~~vHe~~k~HfRL~~PRkSklksHR~lRDdEG~liRHf 583 (1259)
T KOG0163|consen 504 VPEIEFTDNQDCIELIEAKSNGIFDLLDEEAKLPKPSYQHFTARVHESNKNHFRLDLPRKSKLKSHRELRDDEGFLIRHF 583 (1259)
T ss_pred CCceEeccchhHHHHHHHhccchhhhhhhhccCCCcchHHHHHHHHHhhhcceeecCCchhhhhhhhhhccccceeeeec
Confidence 99999999999999999999999999999999999999999999999887764433322 358999999
Q ss_pred CccccccccchhhhccccccHHHHHHHhhcCCch-HHHhhhcccccCCCCccCCCccCCCCCCCCccHHHHHHHHHHHHH
Q 003826 274 AGEVIYDTTGFLEKNRDLLHLDSIELLSSCSCHL-PQIFASNMLSQSNKPVVGPLYKAGGADSQKLSVATKFKGQLFQLM 352 (793)
Q Consensus 274 aG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~~~~-~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~f~~~L~~Lm 352 (793)
||.|.|++.-|+|||.|.|+..+..|+..|++++ ..||.+...+ +.++.. ...+..||+++|++||..||
T Consensus 584 AGaVCYeT~~FvEKNnD~LH~SLe~Li~es~~~ll~sLF~S~s~t-~a~~~~--------gkL~~iSVGaKFKtQL~~Ll 654 (1259)
T KOG0163|consen 584 AGAVCYETEQFVEKNNDALHNSLEGLIEESDNPLLVSLFPSGSST-SAKQTR--------GKLKFISVGAKFKTQLSELL 654 (1259)
T ss_pred ccceeechHHHHHhccHHHHHHHHHHHHhccchHHHHHccCCCCC-cccccc--------ceeeEEehhHHHHHHHHHHH
Confidence 9999999999999999999999999999999986 5688643211 111111 12346799999999999999
Q ss_pred HHHhccCCeeeeecCCCCCCCCCccchhHHHHHhhhhChhHHHHHHhcCCCCccChHHHHHHhhccccccCCCCChHHHH
Q 003826 353 QRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFLLLESVASQDPLSVS 432 (793)
Q Consensus 353 ~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~~F~~RY~~L~~~~~~~~d~~~~~ 432 (793)
+.|++|..|||||||||..+.|..||...++.||.|+||+.++++++.|||.|..|.+.+.-|+..+|+.....||+-.|
T Consensus 655 dKL~stGt~FiRCiKPN~kM~~~~FeGs~iLsQLqCsGm~SVL~LMq~GyPSR~~F~dLYamYkk~lPpkLarLdpRlFc 734 (1259)
T KOG0163|consen 655 DKLESTGTHFIRCIKPNSKMIDRHFEGSAILSQLQCSGMISVLELMQHGYPSRTSFADLYAMYKKVLPPKLARLDPRLFC 734 (1259)
T ss_pred HHHHhcCCeeEEeecCccccccccccHHHHHHHhhhccHHHHHHHHhcCCCccccHHHHHHHHHhhCCHhhhcCChHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988888999999
Q ss_pred HHHHHHcCCCCcceeecceeeeeeecccccccccccccchhhHhhhhhhcccccchhhcccccchhhhhhHHHHHHHHHH
Q 003826 433 VAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTRNRTLHGILRVQSCFRGHQARLCLKELRRGIVALQSFIRGEKIRKE 512 (793)
Q Consensus 433 ~~il~~~~~~~~~~~vGkTkVFlr~~~~~~LE~~R~~~l~aa~~IQ~~~Rg~~~R~~~~~~r~a~i~IQs~~Rg~~aRr~ 512 (793)
.++.+.+|++..+|++|.|||||+.+-+...+.+...--.....+-+.+--|+.+.++++..-++ +-.-+.
T Consensus 735 k~lF~aLgL~q~DfkFGlTKVFFr~GKFaEFDqiMksDPe~m~~lv~kVn~WLv~sRWkk~q~~a---------~sVIKL 805 (1259)
T KOG0163|consen 735 KALFQALGLDQNDFKFGLTKVFFRPGKFAEFDQIMKSDPETMLELVAKVNKWLVRSRWKKSQYGA---------LSVIKL 805 (1259)
T ss_pred HHHHHHhCCCcccccccceeEeecCcchHHHHHHHhcCHHHHHHHHHHHHHHHHHhHHHHhhhhh---------hheeeh
Confidence 99999999999999999999999999998888876655544443333344455555554332211 111111
Q ss_pred HHHHHhHHHHHHHHHHHhhhHHHHHHHHhh
Q 003826 513 YALVLQRHRAAVVIQRQIKSRVARQKLKNI 542 (793)
Q Consensus 513 ~~~l~~~~~AAi~IQ~~~R~~~~R~~~~~~ 542 (793)
-.++..+..+.+++|++.|||++|+++...
T Consensus 806 kNkI~yRae~v~k~Q~~~Rg~L~rkr~~~r 835 (1259)
T KOG0163|consen 806 KNKIIYRAECVLKAQRIARGYLARKRHRPR 835 (1259)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhchH
Confidence 122233444566666666666666665554
No 22
>KOG4229 consensus Myosin VII, myosin IXB and related myosins [Cell motility]
Probab=100.00 E-value=1.9e-65 Score=607.16 Aligned_cols=555 Identities=31% Similarity=0.408 Sum_probs=456.1
Q ss_pred CccCccccCCCcccc-CCcccHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhcCeeEEeeC--CCCceeecCchHHH
Q 003826 3 AKEYKYLRQSSCYSI-NGVDDAEQFRIVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVID--NENHVEPVADEGLI 79 (793)
Q Consensus 3 ~~~y~yL~~s~~~~~-~~~dD~~~f~~~~~Al~~lg~~~~~~~~if~ilaaILhLGNi~F~~~~--~~~~~~~~~~~~l~ 79 (793)
+.+|.||+++.+..+ ++.+|..+|..+..||.++||+.+++.+||+++|||||+|||+|.... ..+.+.+.+...++
T Consensus 273 ~e~y~yL~~~~~~~~~d~~~~~~~~~~l~~~m~v~~f~~~~~~si~~~la~il~~gni~~~~~~~~~~d~~~v~~~~~v~ 352 (1062)
T KOG4229|consen 273 AENYEYLEQGALFTISDGEDDVAQFIRLEAAMSVVGFTDKVLGSIFKSLAAILHIGNISYIKFALDQQDSAEVENEEAVE 352 (1062)
T ss_pred CCCHHHhhccccccccchHHHHHhHHHHHHHHHHhccchhHHHHHHHhcccceeecceeHHhhhcccccchhcccchHHH
Confidence 678999999999999 999999999999999999999999999999999999999999996532 34567788999999
Q ss_pred HHHHHhCCCHHHHHHHHccceeeecCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCC-CcceeEEe
Q 003826 80 TVAKLIGCDIGELKLALSTRKMRVGNDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRR-TGRSISIL 158 (793)
Q Consensus 80 ~~a~LLGv~~~~L~~~L~~~~i~~~~e~i~~~lt~~qA~~~RdaLak~LY~~LF~wiV~~IN~~L~~~~~~-~~~~IgIL 158 (793)
.+|.||+++...|.+++|.++....|+.+..++++++|.+.||++||+||++||.|||.+||..+.+.... ...+||||
T Consensus 353 ~vA~lL~~~~~~l~~alt~~~~~~~ge~~~~~l~~~~A~d~rda~ak~ly~~lf~~iv~rIn~~~~~~~~~~~~~~IgiL 432 (1062)
T KOG4229|consen 353 RVACLLLIKEKLLQEALTARVNVTRGELLLAPLLVERAVDVRDAMAKTLYGRLFDWIVLRINAALSPESDISDILSIGIL 432 (1062)
T ss_pred HHHHHhhcCHHHhhhhhcccceeeehhhhhhhhhHHHhccCchHHHHHHHHHHHHHHHhhHHhccCccccccccceeehh
Confidence 99999999999999999999999999999999999999999999999999999999999999999864321 35799999
Q ss_pred ecCCCccCCCCChhHHHHHHhhHHHHHHHHHHhhHHHHHHHhhcCCcccccccCCchhHHHhhhcCCCccccccccccCC
Q 003826 159 DIYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEKKPLGLLSLLDEESTF 238 (793)
Q Consensus 159 DI~GFE~f~~NsfEQlcINyaNErLq~~f~~~~f~~eqeey~~EgI~~~~i~f~dN~~~ldlie~kp~Gil~lLdee~~~ 238 (793)
||||||+|..|||||+|||||||+||.+||+|+|..||+||..|+|+|..|.|.||..|+|+|..+|.||+.+||||+.+
T Consensus 433 diFgfE~f~~nsfEq~~in~Ane~lQ~~fnqhIf~~Eq~ey~~e~I~w~~i~~~dN~~~ldli~~kp~gil~liDees~f 512 (1062)
T KOG4229|consen 433 DIFGFENFERNSFEQLCINLANEQLQYYFNQHIFALEQEEYDNESIDWRNIEFADNRRRLDLISPKPMGILSLIDEESRF 512 (1062)
T ss_pred hhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCCCeeeeeeeeccchhhhhccCccchhheecccCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcHHHHHHHHHHcCCCCccccC---CCCCcEEEecCccccccccchhhhccccccHHHHHHHhhcCCchHHHhhhcc
Q 003826 239 PNGTDLTFANKLKQHLNSNPCFRGE---RDKSFTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCSCHLPQIFASNM 315 (793)
Q Consensus 239 p~~tD~~f~~kl~~~~~~~~~~~~~---~~~~F~I~HyaG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~~~~~~lf~~~~ 315 (793)
|+++|.+++.|++..++.+..+..+ ....|+|.||||.|.|++.||++||+|.++.|++.++++|.+.+...+.+..
T Consensus 513 P~~td~tl~~k~~~q~~~~~~y~~~k~~~e~~f~I~Hyagkv~y~~~~flekNrD~~~~d~~~~~~s~~~~~~~~~~~~~ 592 (1062)
T KOG4229|consen 513 PKATDQTLLLKLNMQHGSNNLYVFPKSRVETVFGITHYAGKVQYNIRGFLEKNRDTVRNDLVNLLRSSDESLLRQLVNGD 592 (1062)
T ss_pred CchHHHHHHHHhhhhhhcccccccccccccceeeeeeecceehhhhhhHHHhhhhhhhhhHHhhcccccchhhcccCCCC
Confidence 9999999999999999876655433 2569999999999999999999999999999999999998765443221000
Q ss_pred -----------------------------c----ccC---------------------------CCCccC----------
Q 003826 316 -----------------------------L----SQS---------------------------NKPVVG---------- 325 (793)
Q Consensus 316 -----------------------------~----~~~---------------------------~~~~~~---------- 325 (793)
. ..+ +....|
T Consensus 593 ~~~~~~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~s~l~rg~~~~~~~i~~ 672 (1062)
T KOG4229|consen 593 PTAVSRWFELRALKVAMPVPLEVTLRRPVRKTLTADSSRSAPETTNCLPDKVLPEDRPSLFEELSALARGQDHFMRAISQ 672 (1062)
T ss_pred CccCCcchhhhhhcccccccchhhhccccccccccccccchHHHHHhhhccccccCChhhhcchhhcCCCccchhhhhhc
Confidence 0 000 000000
Q ss_pred ---------------C------------CccCCCC-------------C------C------------------------
Q 003826 326 ---------------P------------LYKAGGA-------------D------S------------------------ 335 (793)
Q Consensus 326 ---------------~------------~~~~~~~-------------~------~------------------------ 335 (793)
| .....+. . +
T Consensus 673 ~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ 752 (1062)
T KOG4229|consen 673 NPRYALEQGSQERKGPRRLSSRGSTATPSHDRPGRKTNLLYSEVVNGRKNSEYLCSPRPDLAERARVQLLEKNAINMKSE 752 (1062)
T ss_pred CchhhhhhcCcccCchhhhhhcccccCCCCCCccccccccchhhhcccccccccCCCCHHHHHHHHHHHHhhccccchhh
Confidence 0 0000000 0 0
Q ss_pred ------------------CCccHHHHHH----------------HHHHHHHHHHhccCCeeeeecCCCCCCCCCccchhH
Q 003826 336 ------------------QKLSVATKFK----------------GQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGL 381 (793)
Q Consensus 336 ------------------~~~tv~~~f~----------------~~L~~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~~ 381 (793)
....++.... ....+++..+....|.|++|++-|..+....|+...
T Consensus 753 ~~~~~l~~~~~~~~~~~~~~e~~t~~~l~~~~kk~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 832 (1062)
T KOG4229|consen 753 RLTTLLPRYIPDPCLDPVRRERVTQLRLHQHKKKAFPQPLRSPQVRKSKLESYLAIAKELFVRRFLENQKKIGLRFPDNV 832 (1062)
T ss_pred hhcccccccCccccCCccccchhhhHHHHHhhccccCccccccchhhccchhhhhhhhHHHHHHHHHhhhhhccCCChHH
Confidence 0001222222 233446777777889999999999888888999999
Q ss_pred HHHHhhhhChhHHHHHHhcCCCCccChHHHHHHhhccccccCCCCChHHHHHHHHHHcCCCCcceeecceeeeeeecccc
Q 003826 382 VLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFLLLESVASQDPLSVSVAILHQFNILPEMYQVGYTKLFFRAGQIG 461 (793)
Q Consensus 382 V~~QLr~~gvle~vri~r~Gyp~r~~~~~F~~RY~~L~~~~~~~~d~~~~~~~il~~~~~~~~~~~vGkTkVFlr~~~~~ 461 (793)
|..|+.+.|+.+.++++..+|+..++..+|..-+.+..|.... .........+....+.++.|.+++|+...-..
T Consensus 833 v~~~~~~t~~~~~~~v~~~~~~~~i~~~~~~~~~~i~~~~~~~-----~v~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~ 907 (1062)
T KOG4229|consen 833 VLRQVSYTGELDQEQVRRSLYFAEISPQDSVNQSRIGLPETVD-----TVADEEFSTLSCNADTIRLGVHVVFLLLNERS 907 (1062)
T ss_pred HHHhhhchhhhccchheeccccccccchhccccccccCCccch-----hhchhheeecccCccchhccceEEeecccchH
Confidence 9999999999999999999999999999999999988773221 11122233334467899999999999876544
Q ss_pred cccccc-cccch-hhHhhhhhhcccccchhhcccccchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHH
Q 003826 462 MLEDTR-NRTLH-GILRVQSCFRGHQARLCLKELRRGIVALQSFIRGEKIRKEYALVLQRHRAAVVIQRQIKSRVARQKL 539 (793)
Q Consensus 462 ~LE~~R-~~~l~-aa~~IQ~~~Rg~~~R~~~~~~r~a~i~IQs~~Rg~~aRr~~~~l~~~~~AAi~IQ~~~R~~~~R~~~ 539 (793)
.++..- ..... -+...|++++....++.+..+..+.+.+| |+++..|+..........+++.+|..|+.+..+..+
T Consensus 908 ~~~~~l~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 985 (1062)
T KOG4229|consen 908 RTEVALKDEANDELSFFKQKWFRLTLERKGLLRLSEGSVLIQ--RLELLGRRTCPVAGAPAVAAASLQNAWPVYRELSGR 985 (1062)
T ss_pred HHHHHHhHhhHHHHHHHHHHHHHhhhccccchhhcchhHHHH--HHHHhcccCCcchhhhhhhhhhccccchhhhhhhhh
Confidence 333221 12222 25578999999999999999999999999 888888875432333557899999999999999999
Q ss_pred HhhhhHHHHHHHHHhhHHHHhhhhh
Q 003826 540 KNIKYSSIMIQSVIRGWLVRRCSGD 564 (793)
Q Consensus 540 ~~~r~aai~IQs~~Rg~~aRr~~~~ 564 (793)
...+++.+.+|+.+++...+..+..
T Consensus 986 ~~~~~s~~~~~~~~~~~~~~~~~~~ 1010 (1062)
T KOG4229|consen 986 LGLRRSFIADQSPRSRPAYTMIFAA 1010 (1062)
T ss_pred HHHhhhhcchhcccccchhhhhHHH
Confidence 9999999999999998877766643
No 23
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=98.12 E-value=4.5e-05 Score=91.16 Aligned_cols=73 Identities=27% Similarity=0.300 Sum_probs=62.5
Q ss_pred ccccchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHhhhhHHHHHHHHHhhHHHHhhhhhhhhh
Q 003826 492 ELRRGIVALQSFIRGEKIRKEYALVLQRHRAAVVIQRQIKSRVARQKLKNIKYSSIMIQSVIRGWLVRRCSGDICLL 568 (793)
Q Consensus 492 ~~r~a~i~IQs~~Rg~~aRr~~~~l~~~~~AAi~IQ~~~R~~~~R~~~~~~r~aai~IQs~~Rg~~aRr~~~~l~~~ 568 (793)
-+..+++.||+.+|||+.|+.|..++ .+++.||+.+||+++|+... ...|++.||..+|++..|+.|..++..
T Consensus 671 vl~~~~~~iq~~~r~~~~r~~f~~~r---~~~~~~Q~~~rG~~~r~~~~-~~~aai~~q~~~r~~~~r~~y~~~~~~ 743 (862)
T KOG0160|consen 671 VLSAAKVLIQRQIRGYLARKKFLQLR---SAVIIIQAYSRGVLARRETE-REAAAIGIQKECRSYLNRRRYRALIPA 743 (862)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhhhhHHHHHHhhH-HHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 34457788999999999999997666 79999999999999998444 667999999999999999999876553
No 24
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=98.06 E-value=0.00069 Score=87.51 Aligned_cols=283 Identities=14% Similarity=0.093 Sum_probs=145.0
Q ss_pred HHHHHHHHhCCCHHHHHHHHccc--eeeecCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCcce
Q 003826 77 GLITVAKLIGCDIGELKLALSTR--KMRVGNDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRS 154 (793)
Q Consensus 77 ~l~~~a~LLGv~~~~L~~~L~~~--~i~~~~e~i~~~lt~~qA~~~RdaLak~LY~~LF~wiV~~IN~~L~~~~~~~~~~ 154 (793)
.+..+=..||+++++...++..- .+.+|+-.+...-..+||.-.....|..+- -|+..=+.-...++..+. ...
T Consensus 324 ~t~~a~~ilgfs~~E~~~~~~i~sailhlGn~~f~~~~~~~qa~~~~~~~a~ka~-~llg~~~~~~~~al~~pr---iKv 399 (1930)
T KOG0161|consen 324 ETDEAMDILGFSEEEKISIFRIVSAILHLGNIKFKQEPREEQAEFDNTEVADKAC-HLLGINVEEFLKALLRPR---IKV 399 (1930)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHhcchhhhccccccccCCCCchHHHHHH-HHcCCCHHHHHHHhcccc---eec
Confidence 45666789999999987775322 223454444333244555433333333221 122222333333333221 224
Q ss_pred eEEeecCCCccCCCCChhHHHHHHhhHHHHHHHHHHhhHHHHHHHhhcCCcccccccCCchhHHHhhhcCCCcccccccc
Q 003826 155 ISILDIYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEKKPLGLLSLLDE 234 (793)
Q Consensus 155 IgILDI~GFE~f~~NsfEQlcINyaNErLq~~f~~~~f~~eqeey~~EgI~~~~i~f~dN~~~ldlie~kp~Gil~lLde 234 (793)
.+-.++.|+.. +| .++|=+-|....+..+|.. ...+...+++|. .+-..+|.+++-...-||..
T Consensus 400 g~e~v~k~q~~------~q--~~~~v~alAk~lYerlF~w-lV~riN~sld~~----~~~~~fIgvLDiaGFEIfe~--- 463 (1930)
T KOG0161|consen 400 GREWVSKAQNV------EQ--VLFAVEALAKALYERLFGW-LVKRINKSLDSK----QQRDYFIGVLDIAGFEIFEF--- 463 (1930)
T ss_pred cchhhhhcchH------HH--HHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhc----cccCCcceeeeeccccccCc---
Confidence 44456666643 34 7778788888777777765 677888888887 34455666665533333322
Q ss_pred ccCCCCCCcH----HH-HHHHHHHcCCCCccccC------CCCCcEEEecCccccccccchhhhccccccHHHHHHHh--
Q 003826 235 ESTFPNGTDL----TF-ANKLKQHLNSNPCFRGE------RDKSFTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLS-- 301 (793)
Q Consensus 235 e~~~p~~tD~----~f-~~kl~~~~~~~~~~~~~------~~~~F~I~HyaG~V~Y~~~gfleKN~D~l~~~~~~ll~-- 301 (793)
.+=+ .| .+||++.++.|. |... -+-.|..-||+=+. =.+.+-|+|=. -++.+|.
T Consensus 464 ------nSFEQLciNytnEkLQqfFnh~m-FvlEqeeY~~EgIew~fidfG~Dl-q~~idLIEkp~-----Gi~slLdEE 530 (1930)
T KOG0161|consen 464 ------NSFEQLCINYTNEKLQQFFNHHM-FVLEQEEYQREGIEWDFIDFGLDL-QPTIDLIEKPM-----GILSLLDEE 530 (1930)
T ss_pred ------CCHHHHHHHHHHHHHHhhhcchh-hhhhHHHHHHhCCceeeeccccch-hhhHHHHhchh-----hHHHHHHHH
Confidence 1111 11 256666654333 3322 13467777872221 12333444411 2222222
Q ss_pred ----hcC-CchH-HHhhhcccccCCCCccCCCccCCCCCCCCccHHHHHHHHHHHHHHHHhccCCeeeeecCCCCCCCCC
Q 003826 302 ----SCS-CHLP-QIFASNMLSQSNKPVVGPLYKAGGADSQKLSVATKFKGQLFQLMQRLESTTPHFIRCIKPNNFQSPG 375 (793)
Q Consensus 302 ----~S~-~~~~-~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~f~~~L~~Lm~~L~~t~~hfIrCIkPN~~~~p~ 375 (793)
+++ ..|+ +|+....+. .| ..+++. ..+....+....-+.+ |+|.-++-..++.
T Consensus 531 c~~PkAtd~tf~~kL~~~~~gk---~~-----------~f~~~k-----~~~~~~~F~l~HyaG~--V~Y~~~~WL~Knk 589 (1930)
T KOG0161|consen 531 CVVPKATDKTFLEKLCDQHLGK---HP-----------KFQKPK-----GKKAEAHFALVHYAGT--VDYNVDGWLEKNK 589 (1930)
T ss_pred HhcCCCccchHHHHHHHHhhcc---Cc-----------cccCcc-----cccchhhhheeeecce--eccCccchhhcCC
Confidence 222 2222 333322110 00 011111 1111122222222222 9999999988888
Q ss_pred ccchhHHHHHhhhhChhHHHHHHhcCCCCccChHHHHHHhhc
Q 003826 376 LYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGF 417 (793)
Q Consensus 376 ~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~~F~~RY~~ 417 (793)
.-....|..+|+|++ .+.|.....| +..+..+..++..
T Consensus 590 dpln~~v~~ll~~s~-~~~v~~l~~~---~~~~~~~~~~~~~ 627 (1930)
T KOG0161|consen 590 DPLNDNVVSLLKQST-NKLVSSLFQD---YAGAAAAAKGGEA 627 (1930)
T ss_pred CCchHHHHHHHHhcc-cHHHHHHhhh---hhccchhhhhhhh
Confidence 888899999999999 8888776655 6666666666654
No 25
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=97.83 E-value=1.6e-05 Score=95.05 Aligned_cols=96 Identities=25% Similarity=0.318 Sum_probs=73.6
Q ss_pred hhhHhhhhhhcccccchhhcccccchhhhhhHHHHHHHHHHHHHHH-------h-----------------------HHH
Q 003826 472 HGILRVQSCFRGHQARLCLKELRRGIVALQSFIRGEKIRKEYALVL-------Q-----------------------RHR 521 (793)
Q Consensus 472 ~aa~~IQ~~~Rg~~~R~~~~~~r~a~i~IQs~~Rg~~aRr~~~~l~-------~-----------------------~~~ 521 (793)
.++..||..+|||..|+.|..++.-++.||+.+||+..|+.|.++- + ...
T Consensus 811 ~aa~~iq~~f~~yk~r~~~l~tr~p~v~iqa~~rg~q~r~dy~ki~wSv~~lek~~lrwR~k~~g~Rgfk~~~~~e~~~~ 890 (975)
T KOG0520|consen 811 AAASRIQKKFRGYKQRKEFLSTRQPIVKIQAAVRGYQVRKDYRKITWSVGVLEKLILRWRRKGKGFRGFKGRALFEEQET 890 (975)
T ss_pred hHHHHhhhhhhhHHhhhhhcccCCccccchhhhhchhHhhhhheechhhhHHHHHHHHHHHhhhhhcccccccchhcccc
Confidence 5678999999999999999999999999999999999999995431 1 222
Q ss_pred HHHHHHHHhhhHHHH--HHHHhhhhHHHHHHHHHhhHHHHhhhhhhhh
Q 003826 522 AAVVIQRQIKSRVAR--QKLKNIKYSSIMIQSVIRGWLVRRCSGDICL 567 (793)
Q Consensus 522 AAi~IQ~~~R~~~~R--~~~~~~r~aai~IQs~~Rg~~aRr~~~~l~~ 567 (793)
||+.||..+|-|+.- ..|.++-+|+++||+.+|.+.+|.+|+++..
T Consensus 891 a~t~~e~~yd~yKq~~~~~~~r~~~A~~~VQsm~rs~~a~qqyrR~~~ 938 (975)
T KOG0520|consen 891 AATVIEDCYDFYKQLRKQTEERLTRAVVRVQSMFRSPKAQQQYRRLLL 938 (975)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 556666666666554 4456666788888888888888877765543
No 26
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]
Probab=97.29 E-value=0.0012 Score=81.32 Aligned_cols=92 Identities=25% Similarity=0.260 Sum_probs=71.0
Q ss_pred Hhhhhhhcccccchhhcccc-------cchhhhhhHHHHHHH---HHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHhhh-
Q 003826 475 LRVQSCFRGHQARLCLKELR-------RGIVALQSFIRGEKI---RKEYALVLQRHRAAVVIQRQIKSRVARQKLKNIK- 543 (793)
Q Consensus 475 ~~IQ~~~Rg~~~R~~~~~~r-------~a~i~IQs~~Rg~~a---Rr~~~~l~~~~~AAi~IQ~~~R~~~~R~~~~~~r- 543 (793)
.++|+..||+..|..+.... -.+.-||+.|||++. +..|. .....-++.+|++.||+.+|+.|.+..
T Consensus 539 ~~~qa~~rg~~~r~~~~~~~~fl~~~~P~~~diq~~vr~~~~~~~~~~~~--~~~~~evv~~qs~~R~~lsrk~~~~~~q 616 (1401)
T KOG2128|consen 539 LRIQASERGFSTRNKFRSRLDFLKKQTPFVVDIQALVRGILQYIPRDVYL--DSAKKEVVKFQSLTRGALSRKKYSRKLQ 616 (1401)
T ss_pred hhhhhhccccchHHHHHhhhhHHHhcCchHHHHHHHHHHHhhhchHHHHH--HHhhHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 45599999999988765443 367899999999985 22221 123357899999999999999987654
Q ss_pred ------hHHHHHHHHHhhHHHHhhhhhhhhh
Q 003826 544 ------YSSIMIQSVIRGWLVRRCSGDICLL 568 (793)
Q Consensus 544 ------~aai~IQs~~Rg~~aRr~~~~l~~~ 568 (793)
.+++.||+.+|+...|..|+.+.-.
T Consensus 617 ~~~~~~~~~i~iqs~~r~f~~r~~y~~L~~s 647 (1401)
T KOG2128|consen 617 YFKDNMTKIIKIQSKIRKFPNRKDYKLLFTS 647 (1401)
T ss_pred HHHHhhhhHHHHHHHHHhcccchHHHHHhcC
Confidence 3899999999999999999877543
No 27
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=97.25 E-value=0.00035 Score=44.33 Aligned_cols=19 Identities=32% Similarity=0.546 Sum_probs=11.2
Q ss_pred HHHHHHHHHhhhHHHHHHH
Q 003826 521 RAAVVIQRQIKSRVARQKL 539 (793)
Q Consensus 521 ~AAi~IQ~~~R~~~~R~~~ 539 (793)
.||++||++||||++|+.|
T Consensus 2 ~aai~iQ~~~R~~~~Rk~~ 20 (21)
T PF00612_consen 2 KAAIIIQSYWRGYLARKRY 20 (21)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 4556666666666665555
No 28
>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=96.94 E-value=0.0032 Score=72.48 Aligned_cols=60 Identities=23% Similarity=0.158 Sum_probs=48.0
Q ss_pred ccchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHhhhhHHHHHHHHHhhHHHHhhhhh
Q 003826 494 RRGIVALQSFIRGEKIRKEYALVLQRHRAAVVIQRQIKSRVARQKLKNIKYSSIMIQSVIRGWLVRRCSGD 564 (793)
Q Consensus 494 r~a~i~IQs~~Rg~~aRr~~~~l~~~~~AAi~IQ~~~R~~~~R~~~~~~r~aai~IQs~~Rg~~aRr~~~~ 564 (793)
..-++.||..|||+++|.+|.+++ .++++|+ +||.|+. +..+..||..+||+..++.|++
T Consensus 696 ~~lvtllQK~~RG~~~R~ry~rmk---a~~~ii~-wyR~~K~-------ks~v~el~~~~rg~k~~r~ygk 755 (1001)
T KOG0164|consen 696 PSLVTLLQKAWRGWLARQRYRRMK---ASATIIR-WYRRYKL-------KSYVQELQRRFRGAKQMRDYGK 755 (1001)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH-HHHHHHH-------HHHHHHHHHHHHhhhhccccCC
Confidence 346789999999999999998776 5666666 8885543 4567788999999999999864
No 29
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=96.83 E-value=0.04 Score=68.91 Aligned_cols=99 Identities=21% Similarity=0.219 Sum_probs=84.9
Q ss_pred chhhHhhhhhhcccccchhhcccccchhhhh-hHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHhhhhHHHHH
Q 003826 471 LHGILRVQSCFRGHQARLCLKELRRGIVALQ-SFIRGEKIRKEYALVLQRHRAAVVIQRQIKSRVARQKLKNIKYSSIMI 549 (793)
Q Consensus 471 l~aa~~IQ~~~Rg~~~R~~~~~~r~a~i~IQ-s~~Rg~~aRr~~~~l~~~~~AAi~IQ~~~R~~~~R~~~~~~r~aai~I 549 (793)
.+.++.+|..|+....|..|+.....++.+| ..+|....+....... .+.|++.+|+.||.+..+++|..+.+..+.+
T Consensus 793 ~~~~~~l~~~~~~~~~r~~~~~~~~~i~~lq~~i~~~~~~~~~~e~~~-~~~~~~L~~~~~rs~~~~kr~~~L~k~~i~~ 871 (1463)
T COG5022 793 WRLFIKLQPLLSLLGSRKEYRSYLACIIKLQKTIKREKKLRETEEVEF-SLKAEVLIQKFGRSLKAKKRFSLLKKETIYL 871 (1463)
T ss_pred HHhHHHhhHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHHHhhhhhHHHHHhhhHHHHH
Confidence 3568899999999999999999999999999 7777766666443333 5679999999999999999999999999999
Q ss_pred HHHHhhHHHHhhhhhhhhhHh
Q 003826 550 QSVIRGWLVRRCSGDICLLKS 570 (793)
Q Consensus 550 Qs~~Rg~~aRr~~~~l~~~~~ 570 (793)
|+.+|.-.|++.+..++...+
T Consensus 872 ~~~~r~~~a~r~~~e~k~~~~ 892 (1463)
T COG5022 872 QSAQRVELAERQLQELKIDVK 892 (1463)
T ss_pred HHHHHHHHHHHHHHHHHHhHH
Confidence 999999999999987765443
No 30
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=96.79 E-value=0.0014 Score=41.55 Aligned_cols=21 Identities=38% Similarity=0.588 Sum_probs=18.7
Q ss_pred hhHHHHHHHHHhhHHHHhhhh
Q 003826 543 KYSSIMIQSVIRGWLVRRCSG 563 (793)
Q Consensus 543 r~aai~IQs~~Rg~~aRr~~~ 563 (793)
+++++.||+.||||++|+.|+
T Consensus 1 ~~aai~iQ~~~R~~~~Rk~~k 21 (21)
T PF00612_consen 1 RKAAIIIQSYWRGYLARKRYK 21 (21)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcC
Confidence 368999999999999999874
No 31
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=96.41 E-value=0.0049 Score=74.40 Aligned_cols=50 Identities=24% Similarity=0.339 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHhhhhHHHHHHHHHhhHHHHhhhhhhhhh
Q 003826 519 RHRAAVVIQRQIKSRVARQKLKNIKYSSIMIQSVIRGWLVRRCSGDICLL 568 (793)
Q Consensus 519 ~~~AAi~IQ~~~R~~~~R~~~~~~r~aai~IQs~~Rg~~aRr~~~~l~~~ 568 (793)
...||..||..+|+|+.|+.|...+..++.||+++||+..|+.|+++-+.
T Consensus 809 ~~~aa~~iq~~f~~yk~r~~~l~tr~p~v~iqa~~rg~q~r~dy~ki~wS 858 (975)
T KOG0520|consen 809 DPAAASRIQKKFRGYKQRKEFLSTRQPIVKIQAAVRGYQVRKDYRKITWS 858 (975)
T ss_pred chhHHHHhhhhhhhHHhhhhhcccCCccccchhhhhchhHhhhhheechh
Confidence 33589999999999999999999999999999999999999999887654
No 32
>PTZ00014 myosin-A; Provisional
Probab=95.99 E-value=0.016 Score=70.84 Aligned_cols=41 Identities=22% Similarity=0.167 Sum_probs=38.4
Q ss_pred HHHHHHHHHhhhHHHHHHHHhhhhHHHHHHHHHhhHHHHhh
Q 003826 521 RAAVVIQRQIKSRVARQKLKNIKYSSIMIQSVIRGWLVRRC 561 (793)
Q Consensus 521 ~AAi~IQ~~~R~~~~R~~~~~~r~aai~IQs~~Rg~~aRr~ 561 (793)
..++.||++||||++|++|.+.+.++++||+.+|+|++++.
T Consensus 778 ~~~~~iq~~~r~~~~r~~~~~~~~~~~~iQ~~~R~~l~~~~ 818 (821)
T PTZ00014 778 PLVSVLEALILKIKKKRKVRKNIKSLVRIQAHLRRHLVIAE 818 (821)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 57899999999999999999999999999999999998875
No 33
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=95.87 E-value=0.0091 Score=39.94 Aligned_cols=19 Identities=37% Similarity=0.600 Sum_probs=13.9
Q ss_pred HHHHHHHHHhhhHHHHHHH
Q 003826 521 RAAVVIQRQIKSRVARQKL 539 (793)
Q Consensus 521 ~AAi~IQ~~~R~~~~R~~~ 539 (793)
.+|+.||+.||||++|+.|
T Consensus 4 ~aa~~IQa~~Rg~~~r~~y 22 (26)
T smart00015 4 RAAIIIQAAWRGYLARKRY 22 (26)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 5677777777777777766
No 34
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=95.53 E-value=0.0089 Score=39.98 Aligned_cols=20 Identities=35% Similarity=0.514 Sum_probs=16.6
Q ss_pred ccchhhhhhHHHHHHHHHHH
Q 003826 494 RRGIVALQSFIRGEKIRKEY 513 (793)
Q Consensus 494 r~a~i~IQs~~Rg~~aRr~~ 513 (793)
..+++.||++|||+++|+.|
T Consensus 3 ~~aa~~IQa~~Rg~~~r~~y 22 (26)
T smart00015 3 TRAAIIIQAAWRGYLARKRY 22 (26)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 45688889999999998887
No 35
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]
Probab=94.87 E-value=0.34 Score=60.73 Aligned_cols=91 Identities=24% Similarity=0.251 Sum_probs=64.3
Q ss_pred hhhhhhcccccchhhccc-----ccchhhhhhHHHHHHHHHHHHHHH----hHHHHHHHHHHHhhhHHH----HHHHHhh
Q 003826 476 RVQSCFRGHQARLCLKEL-----RRGIVALQSFIRGEKIRKEYALVL----QRHRAAVVIQRQIKSRVA----RQKLKNI 542 (793)
Q Consensus 476 ~IQ~~~Rg~~~R~~~~~~-----r~a~i~IQs~~Rg~~aRr~~~~l~----~~~~AAi~IQ~~~R~~~~----R~~~~~~ 542 (793)
..|+..||...|.....+ ..-..++|+..||+..|-.+.... ........||+.|||++. .......
T Consensus 512 s~q~~v~~i~~~~~l~~~~~s~~~s~~~~~qa~~rg~~~r~~~~~~~~fl~~~~P~~~diq~~vr~~~~~~~~~~~~~~~ 591 (1401)
T KOG2128|consen 512 SLQALVRGIVLRSALFSLYPSLGKSEKLRIQASERGFSTRNKFRSRLDFLKKQTPFVVDIQALVRGILQYIPRDVYLDSA 591 (1401)
T ss_pred hHHHHhhhhHHHhhHHHHhhhhccccchhhhhhccccchHHHHHhhhhHHHhcCchHHHHHHHHHHHhhhchHHHHHHHh
Confidence 477777777776643222 233455699999999887765432 244678999999999984 1122334
Q ss_pred hhHHHHHHHHHhhHHHHhhhhhhh
Q 003826 543 KYSSIMIQSVIRGWLVRRCSGDIC 566 (793)
Q Consensus 543 r~aai~IQs~~Rg~~aRr~~~~l~ 566 (793)
...++.+|+..||.++|+.+.+..
T Consensus 592 ~~evv~~qs~~R~~lsrk~~~~~~ 615 (1401)
T KOG2128|consen 592 KKEVVKFQSLTRGALSRKKYSRKL 615 (1401)
T ss_pred hHHHHHHHHHHHHHHHHhhHHHHH
Confidence 568999999999999999986543
No 36
>KOG4229 consensus Myosin VII, myosin IXB and related myosins [Cell motility]
Probab=93.71 E-value=0.044 Score=67.94 Aligned_cols=172 Identities=16% Similarity=0.076 Sum_probs=115.8
Q ss_pred ccHHHHHHHHHHHHHHHHhccCCeeeeecCCCCCCCCCccchh-HHHHHhhhhChhHHHHHHhcCCCCccChHHHHHHhh
Q 003826 338 LSVATKFKGQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQG-LVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYG 416 (793)
Q Consensus 338 ~tv~~~f~~~L~~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~-~V~~QLr~~gvle~vri~r~Gyp~r~~~~~F~~RY~ 416 (793)
.+++.++.-++......|....+||.|||+||..-.+..++.. .+..++...|...+....+.|+..++.|.+++..++
T Consensus 642 ~~~~~~~~~~~~~~~s~l~rg~~~~~~~i~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 721 (1062)
T KOG4229|consen 642 DKVLPEDRPSLFEELSALARGQDHFMRAISQNPRYALEQGSQERKGPRRLSSRGSTATPSHDRPGRKTNLLYSEVVNGRK 721 (1062)
T ss_pred ccccccCChhhhcchhhcCCCccchhhhhhcCchhhhhhcCcccCchhhhhhcccccCCCCCCccccccccchhhhcccc
Confidence 3566666678888888999999999999999999999999877 899999999999999999999999999999888776
Q ss_pred ccccccCCCCCh-HHHHHHHHHHcCCCCcceeecceeeeeeecccccccccccccchhhHhhhhhhcccccchhhcccc-
Q 003826 417 FLLLESVASQDP-LSVSVAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTRNRTLHGILRVQSCFRGHQARLCLKELR- 494 (793)
Q Consensus 417 ~L~~~~~~~~d~-~~~~~~il~~~~~~~~~~~vGkTkVFlr~~~~~~LE~~R~~~l~aa~~IQ~~~Rg~~~R~~~~~~r- 494 (793)
...-...+..+. ...|..++.. .+-+.+..+.+.++.+..--..+.-.+...+...+..|..++.|..+.++...+
T Consensus 722 ~~~y~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~~t~~~l~~~~kk~~~~~~~~~~~~~ 799 (1062)
T KOG4229|consen 722 NSEYLCSPRPDLAERARVQLLEK--NAINMKSERLTTLLPRYIPDPCLDPVRRERVTQLRLHQHKKKAFPQPLRSPQVRK 799 (1062)
T ss_pred cccccCCCCHHHHHHHHHHHHhh--ccccchhhhhcccccccCccccCCccccchhhhHHHHHhhccccCccccccchhh
Confidence 543221111121 2233344443 334678888888888765444444333344444556666666666666543332
Q ss_pred ---cchhhhhhHHHHHHHHH
Q 003826 495 ---RGIVALQSFIRGEKIRK 511 (793)
Q Consensus 495 ---~a~i~IQs~~Rg~~aRr 511 (793)
.....+|.-+.+...+.
T Consensus 800 ~k~~~~~~~~~~~~~~~~~~ 819 (1062)
T KOG4229|consen 800 SKLESYLAIAKELFVRRFLE 819 (1062)
T ss_pred ccchhhhhhhhHHHHHHHHH
Confidence 23445555444443333
No 37
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=88.89 E-value=43 Score=40.17 Aligned_cols=28 Identities=11% Similarity=0.177 Sum_probs=18.8
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHHh
Q 003826 27 RIVVEALDIVHVSKEDQESVFAMLAAVLWL 56 (793)
Q Consensus 27 ~~~~~Al~~lg~~~~~~~~if~ilaaILhL 56 (793)
+.+..|-..||+...+.. ..++|-|+.-
T Consensus 371 qsL~~~a~LLGld~~elr--~~L~aRvMqt 398 (1259)
T KOG0163|consen 371 QSLTIAAELLGLDQTELR--TGLCARVMQT 398 (1259)
T ss_pred hhHHHHHHHhCCCHHHHH--HHHHHHHHHh
Confidence 456778888999877643 3456666654
No 38
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=88.55 E-value=4.6 Score=46.10 Aligned_cols=60 Identities=3% Similarity=0.117 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 003826 594 RVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSLSIAKKSLAI 657 (793)
Q Consensus 594 r~~~~e~~l~~~e~e~~~L~~~L~~~e~~~~ele~k~~~~ee~~qkq~~~lq~~L~a~~~sla~ 657 (793)
.+.+.+.++.++|++++.|+++++.+.++..+++++++.++++. ..|+.++++++.++..
T Consensus 70 ALteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~----~~Lk~Ql~a~~~~~~~ 129 (475)
T PRK13729 70 ATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDN----AALAEQVKALGANPVT 129 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH----HHHHHHHHhhhcCCCC
Confidence 34445556667777777777888877788888888888888776 6677777666666544
No 39
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=87.47 E-value=7.2 Score=41.16 Aligned_cols=39 Identities=26% Similarity=0.481 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 588 LAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEY 626 (793)
Q Consensus 588 l~~l~~r~~~~e~~l~~~e~e~~~L~~~L~~~e~~~~el 626 (793)
+..|+-++.+.+.++...+-|+.+|+-+|..+++.|.|-
T Consensus 70 iRHLkakLkes~~~l~dRetEI~eLksQL~RMrEDWIEE 108 (305)
T PF15290_consen 70 IRHLKAKLKESENRLHDRETEIDELKSQLARMREDWIEE 108 (305)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555555555555555443
No 40
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=83.38 E-value=64 Score=35.07 Aligned_cols=61 Identities=18% Similarity=0.248 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhccc
Q 003826 597 KAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEV----WQKQMRSLQSSLSIAKKSLAI 657 (793)
Q Consensus 597 ~~e~~l~~~e~e~~~L~~~L~~~e~~~~ele~k~~~~ee~----~qkq~~~lq~~L~a~~~sla~ 657 (793)
++...+..++.+...++..|.++..+..++|..+...++. +.++|..|...-...+..|..
T Consensus 139 kL~k~i~~Le~e~~~~q~~le~Lr~EKVdlEn~LE~EQE~lvN~L~Kqm~~l~~eKr~Lq~~l~~ 203 (310)
T PF09755_consen 139 KLQKKIERLEKEKSAKQEELERLRREKVDLENTLEQEQEALVNRLWKQMDKLEAEKRRLQEKLEQ 203 (310)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3344444555555566677777778888888777776664 557777666666666655543
No 41
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=81.79 E-value=31 Score=29.23 Aligned_cols=43 Identities=14% Similarity=0.255 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 590 ELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKS 632 (793)
Q Consensus 590 ~l~~r~~~~e~~l~~~e~e~~~L~~~L~~~e~~~~ele~k~~~ 632 (793)
.|+.++..+-..+..+..|+.+|+++...+.....+++.....
T Consensus 8 ~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~ 50 (72)
T PF06005_consen 8 QLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQ 50 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444433333
No 42
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=79.76 E-value=66 Score=36.68 Aligned_cols=39 Identities=10% Similarity=0.049 Sum_probs=25.0
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHH
Q 003826 501 QSFIRGEKIRKEYALVLQRHRAAVVIQRQIKSRVARQKLK 540 (793)
Q Consensus 501 Qs~~Rg~~aRr~~~~l~~~~~AAi~IQ~~~R~~~~R~~~~ 540 (793)
+.++--+..=.++.+.. ++.||-++|..|.-|+..+.+.
T Consensus 346 EKhVhNFMmDtqLTk~~-KnAAA~VLqeTW~i~K~trl~~ 384 (489)
T KOG3684|consen 346 EKHVHNFMMDTQLTKEH-KNAAANVLQETWLIYKHTKLVS 384 (489)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhhc
Confidence 44444444444443332 5679999999999888776653
No 43
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=79.65 E-value=19 Score=38.30 Aligned_cols=60 Identities=15% Similarity=0.313 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 586 SFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQ 645 (793)
Q Consensus 586 ~~l~~l~~r~~~~e~~l~~~e~e~~~L~~~L~~~e~~~~ele~k~~~~ee~~qkq~~~lq 645 (793)
..+..|...+.+......++.+++.+++.++..++.++.+++.++.+..+.+.+++..++
T Consensus 52 ~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAmq 111 (265)
T COG3883 52 NEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARAMQ 111 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555555555555555555555555555555555555544444444
No 44
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=78.78 E-value=33 Score=29.09 Aligned_cols=52 Identities=19% Similarity=0.236 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 586 SFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVW 637 (793)
Q Consensus 586 ~~l~~l~~r~~~~e~~l~~~e~e~~~L~~~L~~~e~~~~ele~k~~~~ee~~ 637 (793)
..+..|+.++.+++.+..++.+++..|.+++++++.+......++.++-..+
T Consensus 18 eti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl 69 (72)
T PF06005_consen 18 ETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGKL 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455666667777777777777777777777777766666666666555443
No 45
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=78.51 E-value=27 Score=28.99 Aligned_cols=53 Identities=13% Similarity=0.163 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 589 AELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQM 641 (793)
Q Consensus 589 ~~l~~r~~~~e~~l~~~e~e~~~L~~~L~~~e~~~~ele~k~~~~ee~~qkq~ 641 (793)
..|+.++..+-.....+..||..|.+++...+.++..+-+++..-....+..+
T Consensus 3 ~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI 55 (65)
T TIGR02449 3 QALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMI 55 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777778888888888888888888887777777666555553333
No 46
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=75.49 E-value=42 Score=30.39 Aligned_cols=55 Identities=20% Similarity=0.204 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 583 VKASFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVW 637 (793)
Q Consensus 583 ~~~~~l~~l~~r~~~~e~~l~~~e~e~~~L~~~L~~~e~~~~ele~k~~~~ee~~ 637 (793)
++...+-+.+.+...+...+..++..+..+++++.-+.=++..|+.|+..+.+++
T Consensus 16 vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El 70 (102)
T PF10205_consen 16 VLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEEL 70 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444445555566666666666666666666666666655555555555444
No 47
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=75.46 E-value=62 Score=31.74 Aligned_cols=53 Identities=19% Similarity=0.345 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 597 KAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSLSIAKK 653 (793)
Q Consensus 597 ~~e~~l~~~e~e~~~L~~~L~~~e~~~~ele~k~~~~ee~~qkq~~~lq~~L~a~~~ 653 (793)
.++.+...+++++.+|+.+++.++.+...++.+...+++.- ..|-.-|..+++
T Consensus 101 ~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY----~~L~~Im~RARk 153 (161)
T TIGR02894 101 ALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDY----QTLIDIMDRARK 153 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 44455566666677777777777777777766666666655 445555666655
No 48
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=75.12 E-value=50 Score=33.86 Aligned_cols=35 Identities=29% Similarity=0.352 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 597 KAEAALREKEEENDILHQRLQQYESRWSEYEQKMK 631 (793)
Q Consensus 597 ~~e~~l~~~e~e~~~L~~~L~~~e~~~~ele~k~~ 631 (793)
++..++..++.+..+++++|..++.+.+.++++.+
T Consensus 153 eL~~eleele~e~ee~~erlk~le~E~s~LeE~~~ 187 (290)
T COG4026 153 ELLKELEELEAEYEEVQERLKRLEVENSRLEEMLK 187 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444444333
No 49
>PRK11637 AmiB activator; Provisional
Probab=74.90 E-value=25 Score=40.32 Aligned_cols=10 Identities=10% Similarity=0.189 Sum_probs=3.5
Q ss_pred HHHHHHHHHH
Q 003826 620 ESRWSEYEQK 629 (793)
Q Consensus 620 e~~~~ele~k 629 (793)
+.+..+++..
T Consensus 102 ~~ei~~l~~e 111 (428)
T PRK11637 102 NKQIDELNAS 111 (428)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 50
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=74.70 E-value=1.6e+02 Score=34.62 Aligned_cols=78 Identities=24% Similarity=0.325 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhccc
Q 003826 581 VLVKASFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEV---WQKQMRSLQSSLSIAKKSLAI 657 (793)
Q Consensus 581 ~~~~~~~l~~l~~r~~~~e~~l~~~e~e~~~L~~~L~~~e~~~~ele~k~~~~ee~---~qkq~~~lq~~L~a~~~sla~ 657 (793)
+..+...+..+..+..+.+..+....++.......+..++.+..-+..+.+.++++ +.++...|..+|..+++.+..
T Consensus 115 i~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~ 194 (546)
T KOG0977|consen 115 ITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDD 194 (546)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 44444555555555555555555555555555555556666666666666555555 445666777777777777654
Q ss_pred c
Q 003826 658 D 658 (793)
Q Consensus 658 ~ 658 (793)
+
T Consensus 195 E 195 (546)
T KOG0977|consen 195 E 195 (546)
T ss_pred H
Confidence 3
No 51
>KOG0942 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=74.29 E-value=4 Score=49.47 Aligned_cols=39 Identities=15% Similarity=0.078 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHhhhh
Q 003826 506 GEKIRKEYALVLQRHRAAVVIQRQIKSRVARQKLKNIKY 544 (793)
Q Consensus 506 g~~aRr~~~~l~~~~~AAi~IQ~~~R~~~~R~~~~~~r~ 544 (793)
....|++-++.+++.++|+++|+.|||+++|++.+..-+
T Consensus 15 ~~~er~kRee~rk~e~~av~vQs~~Rg~~~r~~~~~~~R 53 (1001)
T KOG0942|consen 15 AAEERHKREEERKQEKNAVKVQSFWRGFRVRHNQKLLFR 53 (1001)
T ss_pred HHHHHHhhHHHHHHhccchHHHHHHHHHHHHHHHHHHHH
Confidence 344566666666677888999999999988887666433
No 52
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=74.06 E-value=44 Score=37.79 Aligned_cols=73 Identities=23% Similarity=0.276 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 003826 583 VKASFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSLSIAKKSL 655 (793)
Q Consensus 583 ~~~~~l~~l~~r~~~~e~~l~~~e~e~~~L~~~L~~~e~~~~ele~k~~~~ee~~qkq~~~lq~~L~a~~~sl 655 (793)
.....+..++.++.+...++...++++..|.+.+..-....++++++.+......+++..+|+++|...---+
T Consensus 379 ~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQlrDlmf~l 451 (493)
T KOG0804|consen 379 IVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREKEALGSKDEKITDLQEQLRDLMFFL 451 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHheeh
Confidence 3444555666677777777777777777777777777777777777777777777777777777766554433
No 53
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=72.29 E-value=1.5e+02 Score=36.71 Aligned_cols=69 Identities=25% Similarity=0.367 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003826 583 VKASFLAELQRRVLKAEAALR----EKEEENDILHQRLQQYESRW----SEYEQKMKSMEEVWQKQMRSLQSSLSIAKKS 654 (793)
Q Consensus 583 ~~~~~l~~l~~r~~~~e~~l~----~~e~e~~~L~~~L~~~e~~~----~ele~k~~~~ee~~qkq~~~lq~~L~a~~~s 654 (793)
.....+.+.+-|...+|+++. .....+..+++.+++.+... .|+++-|..+ +..+..|+.+-+..+..
T Consensus 973 mkqeelSe~qvRldmaEkkLss~~k~~~h~v~~~~ek~ee~~a~lr~Ke~efeetmdaL----q~di~~lEsek~elKqr 1048 (1243)
T KOG0971|consen 973 MKQEELSEAQVRLDLAEKKLSSAAKDADHRVEKVQEKLEETQALLRKKEKEFEETMDAL----QADIDQLESEKAELKQR 1048 (1243)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhhHHHHHHH
Confidence 344556667777777777765 33445555555555554433 3333333333 33344555554444444
Q ss_pred c
Q 003826 655 L 655 (793)
Q Consensus 655 l 655 (793)
+
T Consensus 1049 l 1049 (1243)
T KOG0971|consen 1049 L 1049 (1243)
T ss_pred h
Confidence 3
No 54
>PRK09039 hypothetical protein; Validated
Probab=71.58 E-value=43 Score=37.28 Aligned_cols=140 Identities=11% Similarity=0.047 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-
Q 003826 581 VLVKASFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSLSIAKKSLAIDD- 659 (793)
Q Consensus 581 ~~~~~~~l~~l~~r~~~~e~~l~~~e~e~~~L~~~L~~~e~~~~ele~k~~~~ee~~qkq~~~lq~~L~a~~~sla~~~- 659 (793)
+........+....+..+.+++..++..+..|+..|...+.+..+.+.++..++..++..+...-.+|+..+..+-..-
T Consensus 125 L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~~~~~l~~~~~~~~~~l~ 204 (343)
T PRK09039 125 LDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQRVQELNRYRSEFFGRLR 204 (343)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3344444555555666666666666666777777777777777777777777777776666555555666555552110
Q ss_pred -cccccccCCCCCccccccccCCC-CCCCCCCCCCccCCCCcchhhhhHHHHHhhhcccccccceeeee
Q 003826 660 -SERNSDASVNASDEVEYSWDTGS-NCKGQESNGVRPMSAGLSVISRLAEEFDQRSQVFGDDAKFLVEV 726 (793)
Q Consensus 660 -~~~~~~~s~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~q~~~~~~~~~~e~ 726 (793)
.....+...-.++ .+..++ ....+ ++..-.+.+...+..++..+.....-.+++....|.|
T Consensus 205 ~~~~~~~~iri~g~----~~~~~~~vlF~~--gsa~L~~~~~~~L~~ia~~l~~~~~~~p~~i~~~I~I 267 (343)
T PRK09039 205 EILGDREGIRIVGD----RFVFQSEVLFPT--GSAELNPEGQAEIAKLAAALIELAKEIPPEINWVLRV 267 (343)
T ss_pred HHhCCCCCcEEECC----EEEecCCceeCC--CCcccCHHHHHHHHHHHHHHHHhhhccCCcCCeeEEE
Confidence 0111110000011 011111 11111 1122224667778888888877654455666555555
No 55
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=71.03 E-value=29 Score=33.46 Aligned_cols=63 Identities=25% Similarity=0.470 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Q 003826 590 ELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEV---WQKQMRSLQSSLSIAK 652 (793)
Q Consensus 590 ~l~~r~~~~e~~l~~~e~e~~~L~~~L~~~e~~~~ele~k~~~~ee~---~qkq~~~lq~~L~a~~ 652 (793)
.+.+++..++.++...+..+......|.+......+++.++..++.. |...+..+...+..++
T Consensus 77 ~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~k~~~~k 142 (143)
T PF12718_consen 77 QLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEELEEKYKEAK 142 (143)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhc
Confidence 56667777777777777777777777777777777777777776654 5555566665555543
No 56
>PRK09039 hypothetical protein; Validated
Probab=70.84 E-value=1.7e+02 Score=32.64 Aligned_cols=39 Identities=10% Similarity=0.175 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 595 VLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSM 633 (793)
Q Consensus 595 ~~~~e~~l~~~e~e~~~L~~~L~~~e~~~~ele~k~~~~ 633 (793)
+..+++.+..++.++...+++....+.+..+++.++...
T Consensus 146 I~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a 184 (343)
T PRK09039 146 IAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVA 184 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333344444444444333
No 57
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=70.47 E-value=44 Score=34.22 Aligned_cols=8 Identities=13% Similarity=0.393 Sum_probs=3.2
Q ss_pred ceeeccee
Q 003826 445 MYQVGYTK 452 (793)
Q Consensus 445 ~~~vGkTk 452 (793)
.|-+-.|.
T Consensus 34 eYnITisS 41 (290)
T COG4026 34 EYNITISS 41 (290)
T ss_pred cceeEEEe
Confidence 34443333
No 58
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=69.72 E-value=1.1e+02 Score=33.26 Aligned_cols=68 Identities=13% Similarity=0.253 Sum_probs=51.1
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 576 NDSDEVLVKASFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRS 643 (793)
Q Consensus 576 ~~~~~~~~~~~~l~~l~~r~~~~e~~l~~~e~e~~~L~~~L~~~e~~~~ele~k~~~~ee~~qkq~~~ 643 (793)
.+.++...+...+..|..++..++.++.+.-.|+++|.+.|...+.....+...+..+.+.-..-+..
T Consensus 224 ~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~m 291 (306)
T PF04849_consen 224 RKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAM 291 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566677788888999999999999999999999999998877766666666666666655433333
No 59
>PRK10884 SH3 domain-containing protein; Provisional
Probab=69.14 E-value=33 Score=35.30 Aligned_cols=53 Identities=19% Similarity=0.270 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 588 LAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQ 640 (793)
Q Consensus 588 l~~l~~r~~~~e~~l~~~e~e~~~L~~~L~~~e~~~~ele~k~~~~ee~~qkq 640 (793)
..+++.++...+..+.+++++|++|+++++..+.+..+++++...+......+
T Consensus 120 ~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~~~~ 172 (206)
T PRK10884 120 TAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTIIMQ 172 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666777888888888888888888877777777666655433
No 60
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=68.73 E-value=63 Score=35.12 Aligned_cols=17 Identities=12% Similarity=0.427 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHh
Q 003826 340 VATKFKGQLFQLMQRLE 356 (793)
Q Consensus 340 v~~~f~~~L~~Lm~~L~ 356 (793)
+...|...|..|-..|.
T Consensus 48 ~~~~ye~el~~lr~~id 64 (312)
T PF00038_consen 48 IKEMYEEELRELRRQID 64 (312)
T ss_dssp HHHHHHHHHHCHHHHHH
T ss_pred cccchhhHHHHhHHhhh
Confidence 45556666655555444
No 61
>PRK11637 AmiB activator; Provisional
Probab=68.39 E-value=55 Score=37.53 Aligned_cols=49 Identities=12% Similarity=0.251 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 588 LAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEV 636 (793)
Q Consensus 588 l~~l~~r~~~~e~~l~~~e~e~~~L~~~L~~~e~~~~ele~k~~~~ee~ 636 (793)
+..++.+..+++.++..++.++..+..++...+.+..+++.++..++++
T Consensus 63 i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~e 111 (428)
T PRK11637 63 VRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNAS 111 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444444444444444444444444433
No 62
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=68.33 E-value=59 Score=36.85 Aligned_cols=74 Identities=15% Similarity=0.212 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003826 581 VLVKASFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSLSIAKKS 654 (793)
Q Consensus 581 ~~~~~~~l~~l~~r~~~~e~~l~~~e~e~~~L~~~L~~~e~~~~ele~k~~~~ee~~qkq~~~lq~~L~a~~~s 654 (793)
+.........|+..+.+++.++..++.++.+....+..+++++.+++.+++.++.+..++-..|-..|+++..+
T Consensus 54 i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~r~qr~~La~~L~A~~r~ 127 (420)
T COG4942 54 IREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQEREQRRRLAEQLAALQRS 127 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34445556667777777777777777777777777778888888888888877777766666666677766554
No 63
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=68.27 E-value=96 Score=31.42 Aligned_cols=64 Identities=25% Similarity=0.391 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 580 EVLVKASFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRS 643 (793)
Q Consensus 580 ~~~~~~~~l~~l~~r~~~~e~~l~~~e~e~~~L~~~L~~~e~~~~ele~k~~~~ee~~qkq~~~ 643 (793)
.+..+...+..|+.++..++.++.++..-++.++.++..+.-+..-+|.++..++++-..-...
T Consensus 117 ~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~R 180 (194)
T PF08614_consen 117 RLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVER 180 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666677777777777777777777777777777777777777777776665443333
No 64
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=67.83 E-value=1.4e+02 Score=30.15 Aligned_cols=33 Identities=9% Similarity=0.037 Sum_probs=18.3
Q ss_pred HHHHHHHhhhHHHHHHHHhhhhHHHHHHHHHhh
Q 003826 523 AVVIQRQIKSRVARQKLKNIKYSSIMIQSVIRG 555 (793)
Q Consensus 523 Ai~IQ~~~R~~~~R~~~~~~r~aai~IQs~~Rg 555 (793)
-++|...=||.+--+-....+...-.+|..+.+
T Consensus 74 QVTi~C~ERGlLL~rvrde~~~~l~~y~~l~~s 106 (189)
T PF10211_consen 74 QVTIDCPERGLLLLRVRDEYRMTLDAYQTLYES 106 (189)
T ss_pred HHHhCcHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367777778877555444444433334444443
No 65
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=67.77 E-value=41 Score=27.56 Aligned_cols=36 Identities=25% Similarity=0.341 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 602 LREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVW 637 (793)
Q Consensus 602 l~~~e~e~~~L~~~L~~~e~~~~ele~k~~~~ee~~ 637 (793)
+......+.....+|+..+.++.+++..+..+++++
T Consensus 20 L~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ 55 (61)
T PF08826_consen 20 LTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEM 55 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444455555555555555555555554443
No 66
>PRK10884 SH3 domain-containing protein; Provisional
Probab=67.74 E-value=61 Score=33.31 Aligned_cols=14 Identities=21% Similarity=0.401 Sum_probs=7.9
Q ss_pred ceeecceeeeeeec
Q 003826 445 MYQVGYTKLFFRAG 458 (793)
Q Consensus 445 ~~~vGkTkVFlr~~ 458 (793)
-|---...|++|.+
T Consensus 26 ~YIsD~l~v~lRsG 39 (206)
T PRK10884 26 RYVSDELNTYVRSG 39 (206)
T ss_pred EEEEcceeEEEEcC
Confidence 35555566666654
No 67
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=67.18 E-value=1.1e+02 Score=28.63 Aligned_cols=48 Identities=21% Similarity=0.304 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q 003826 586 SFLAELQRRVLKAEAALREKEEENDIL---HQRLQQYESRWSEYEQKMKSM 633 (793)
Q Consensus 586 ~~l~~l~~r~~~~e~~l~~~e~e~~~L---~~~L~~~e~~~~ele~k~~~~ 633 (793)
..+..+......+..++..+..++.++ ..++..++.+..+++.|...+
T Consensus 37 ~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~ 87 (120)
T PF12325_consen 37 EELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTL 87 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444443333333222 233334444444444444433
No 68
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=66.38 E-value=87 Score=33.39 Aligned_cols=69 Identities=10% Similarity=0.166 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 585 ASFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSLSIAKK 653 (793)
Q Consensus 585 ~~~l~~l~~r~~~~e~~l~~~e~e~~~L~~~L~~~e~~~~ele~k~~~~ee~~qkq~~~lq~~L~a~~~ 653 (793)
......++..+..+...+.+...+..+++.++.+.+.+...++..+..+++....+-..|...+.+...
T Consensus 44 ~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAmq~ 112 (265)
T COG3883 44 QKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARAMQV 112 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444555555555555555555555555555555555554554555544444433
No 69
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=65.87 E-value=68 Score=33.69 Aligned_cols=48 Identities=15% Similarity=0.281 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 590 ELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVW 637 (793)
Q Consensus 590 ~l~~r~~~~e~~l~~~e~e~~~L~~~L~~~e~~~~ele~k~~~~ee~~ 637 (793)
.|..+...++.+..+++.++..+..+++.++.+..++..++..++...
T Consensus 93 aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~ 140 (239)
T COG1579 93 ALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNL 140 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444444444443
No 70
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=65.67 E-value=62 Score=33.47 Aligned_cols=29 Identities=24% Similarity=0.376 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 594 RVLKAEAALREKEEENDILHQRLQQYESR 622 (793)
Q Consensus 594 r~~~~e~~l~~~e~e~~~L~~~L~~~e~~ 622 (793)
|..+++-.++.+++||+.|+.+.+.+...
T Consensus 91 Rm~eme~~i~dL~een~~L~~en~~Lr~~ 119 (292)
T KOG4005|consen 91 RMEEMEYEIKDLTEENEILQNENDSLRAI 119 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555444444444433
No 71
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=65.48 E-value=1.8e+02 Score=30.55 Aligned_cols=67 Identities=18% Similarity=0.221 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 586 SFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSLSIAK 652 (793)
Q Consensus 586 ~~l~~l~~r~~~~e~~l~~~e~e~~~L~~~L~~~e~~~~ele~k~~~~ee~~qkq~~~lq~~L~a~~ 652 (793)
.....|...+..+..++..++++...++.++...+....+++.......+...++...+..+-+...
T Consensus 103 ~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e~~~~~~~~~~~L~ 169 (239)
T COG1579 103 ERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIREEGQELSSKREELK 169 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444455555555556666666666666666655555555444444444433333
No 72
>KOG4427 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=65.27 E-value=11 Score=44.79 Aligned_cols=20 Identities=20% Similarity=0.293 Sum_probs=10.6
Q ss_pred ccchhhhhhHHHHHHHHHHH
Q 003826 494 RRGIVALQSFIRGEKIRKEY 513 (793)
Q Consensus 494 r~a~i~IQs~~Rg~~aRr~~ 513 (793)
..+++.||++||||++|++|
T Consensus 30 ~~aa~~iq~~lrsyl~Rkk~ 49 (1096)
T KOG4427|consen 30 EAAALFIQRVLRSYLVRKKA 49 (1096)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555543
No 73
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=64.40 E-value=1.1e+02 Score=29.63 Aligned_cols=13 Identities=23% Similarity=0.422 Sum_probs=8.2
Q ss_pred hhhhHHHHHhhhc
Q 003826 702 ISRLAEEFDQRSQ 714 (793)
Q Consensus 702 ~~~l~~e~~~~~q 714 (793)
++.-|.+|+++.+
T Consensus 106 ~d~~ae~~eRkv~ 118 (143)
T PF12718_consen 106 ADVKAEHFERKVK 118 (143)
T ss_pred HHHHhHHHHHHHH
Confidence 4555666776666
No 74
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=64.28 E-value=86 Score=34.43 Aligned_cols=45 Identities=24% Similarity=0.275 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 583 VKASFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYE 627 (793)
Q Consensus 583 ~~~~~l~~l~~r~~~~e~~l~~~e~e~~~L~~~L~~~e~~~~ele 627 (793)
.....+..++.+..++.+++.+++.+.+++.+++..++.+..+++
T Consensus 47 ~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~ 91 (314)
T PF04111_consen 47 ELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELD 91 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555556666666666666666666666555554443
No 75
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=64.20 E-value=2.3e+02 Score=31.21 Aligned_cols=120 Identities=18% Similarity=0.165 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHhhhhHHHHHHHHHhhHHHHhhhhhhhhhHhHhhhcCChhHHHHHHHHHHHHHH----HHHHHHHHHHHH
Q 003826 530 IKSRVARQKLKNIKYSSIMIQSVIRGWLVRRCSGDICLLKSVESKGNDSDEVLVKASFLAELQR----RVLKAEAALREK 605 (793)
Q Consensus 530 ~R~~~~R~~~~~~r~aai~IQs~~Rg~~aRr~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~----r~~~~e~~l~~~ 605 (793)
||.-+.-.-...+....-.++.-..........-.--.-.-.........++..+......+.. ++..++.++.+.
T Consensus 142 WR~~ll~gl~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~ 221 (325)
T PF08317_consen 142 WRMQLLEGLKEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQ 221 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 606 EEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSLSIAKK 653 (793)
Q Consensus 606 e~e~~~L~~~L~~~e~~~~ele~k~~~~ee~~qkq~~~lq~~L~a~~~ 653 (793)
..+++.++.++.+++.+..+++.++..+.+.. ..++.+++.+.+
T Consensus 222 ~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k----~~l~~eI~e~~~ 265 (325)
T PF08317_consen 222 KEEIEAKKKELAELQEELEELEEKIEELEEQK----QELLAEIAEAEK 265 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
No 76
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=64.16 E-value=70 Score=37.73 Aligned_cols=33 Identities=33% Similarity=0.528 Sum_probs=24.1
Q ss_pred CCCHHHHHHHHHhHHHHHhHHHHhhHHHHHH-Hhhhc
Q 003826 735 LNPDKELRRLKQMFEAWKKDYGSRLRETKVI-LNKLG 770 (793)
Q Consensus 735 ~~~~~el~~lk~~f~~wkk~~~~rl~~~~~~-~~~~~ 770 (793)
+...+|||+. .+.|+|.+..|-|+.|-. |.++.
T Consensus 609 vv~~eelr~~---~e~~~kr~ee~~r~~k~~~i~rii 642 (652)
T COG2433 609 VVDSEELRRA---IEEWKKRFEERERRQKEEDILRII 642 (652)
T ss_pred eecHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666654 789999999998887755 55553
No 77
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=63.41 E-value=44 Score=40.89 Aligned_cols=18 Identities=28% Similarity=0.363 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 003826 619 YESRWSEYEQKMKSMEEV 636 (793)
Q Consensus 619 ~e~~~~ele~k~~~~ee~ 636 (793)
+...+.++|+|++.++++
T Consensus 453 LtdknlnlEekVklLeet 470 (1243)
T KOG0971|consen 453 LTDKNLNLEEKVKLLEET 470 (1243)
T ss_pred HHhhccCHHHHHHHHHHH
Confidence 333444455555544444
No 78
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=62.94 E-value=1.1e+02 Score=32.28 Aligned_cols=51 Identities=22% Similarity=0.202 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 587 FLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVW 637 (793)
Q Consensus 587 ~l~~l~~r~~~~e~~l~~~e~e~~~L~~~L~~~e~~~~ele~k~~~~ee~~ 637 (793)
.+..++.....++..+.+.++++.+|++++...+.-..++.--|..|.+.+
T Consensus 64 e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L 114 (251)
T PF11932_consen 64 EIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDEL 114 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444445555555555555544444444444444444
No 79
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=62.85 E-value=48 Score=34.26 Aligned_cols=49 Identities=12% Similarity=0.154 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 589 AELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVW 637 (793)
Q Consensus 589 ~~l~~r~~~~e~~l~~~e~e~~~L~~~L~~~e~~~~ele~k~~~~ee~~ 637 (793)
.+++-.+.++..+-+.+..||+.|+...+-+-.+..|+...|..+.+++
T Consensus 93 ~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l 141 (292)
T KOG4005|consen 93 EEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQEL 141 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3444455555555556666666666666666666665555555444443
No 80
>KOG0942 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=62.22 E-value=91 Score=38.45 Aligned_cols=35 Identities=23% Similarity=0.332 Sum_probs=26.9
Q ss_pred hHHHHHHHHhhhhHHHHHHHHHhhHHHHhhhhhhh
Q 003826 532 SRVARQKLKNIKYSSIMIQSVIRGWLVRRCSGDIC 566 (793)
Q Consensus 532 ~~~~R~~~~~~r~aai~IQs~~Rg~~aRr~~~~l~ 566 (793)
....|..-++..++++++|+.|||+.+|+..+.+.
T Consensus 18 er~kRee~rk~e~~av~vQs~~Rg~~~r~~~~~~~ 52 (1001)
T KOG0942|consen 18 ERHKREEERKQEKNAVKVQSFWRGFRVRHNQKLLF 52 (1001)
T ss_pred HHHhhHHHHHHhccchHHHHHHHHHHHHHHHHHHH
Confidence 33445555666679999999999999999887553
No 81
>KOG4427 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=61.53 E-value=1e+02 Score=37.22 Aligned_cols=35 Identities=34% Similarity=0.451 Sum_probs=25.5
Q ss_pred HhHHHHHHHHHHHhhhHHHHHHHHhhhhHHHHHHHHHhhHH
Q 003826 517 LQRHRAAVVIQRQIKSRVARQKLKNIKYSSIMIQSVIRGWL 557 (793)
Q Consensus 517 ~~~~~AAi~IQ~~~R~~~~R~~~~~~r~aai~IQs~~Rg~~ 557 (793)
+++..||+.||++||+|++|++|. +.||.-|+...
T Consensus 27 rrr~~aa~~iq~~lrsyl~Rkk~~------~~I~~e~d~~f 61 (1096)
T KOG4427|consen 27 RRREAAALFIQRVLRSYLVRKKAQ------IEIQEEFDNLF 61 (1096)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHhh
Confidence 345679999999999999988764 45666666544
No 82
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=61.16 E-value=1.3e+02 Score=33.83 Aligned_cols=59 Identities=20% Similarity=0.261 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhc
Q 003826 597 KAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQ----KQMRSLQSSLSIAKKSL 655 (793)
Q Consensus 597 ~~e~~l~~~e~e~~~L~~~L~~~e~~~~ele~k~~~~ee~~q----kq~~~lq~~L~a~~~sl 655 (793)
++-..++.++.+-...+--|+++..+..++|..+++++|.+- |.|..|+.+-...++-|
T Consensus 162 Klm~ki~Klen~t~~kq~~leQLRre~V~lentlEQEqEalvN~LwKrmdkLe~ekr~Lq~Kl 224 (552)
T KOG2129|consen 162 KLMNKIRKLENKTLLKQNTLEQLRREAVQLENTLEQEQEALVNSLWKRMDKLEQEKRYLQKKL 224 (552)
T ss_pred HHHHHHHHhhhhhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444445544444445568888888888888888777622 56666666555555555
No 83
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=60.78 E-value=1.9e+02 Score=29.21 Aligned_cols=22 Identities=23% Similarity=0.374 Sum_probs=14.4
Q ss_pred HHHHHHHHhhHHHHhhhhhhhh
Q 003826 546 SIMIQSVIRGWLVRRCSGDICL 567 (793)
Q Consensus 546 ai~IQs~~Rg~~aRr~~~~l~~ 567 (793)
=|.|.|.=||-+--+....++.
T Consensus 74 QVTi~C~ERGlLL~rvrde~~~ 95 (189)
T PF10211_consen 74 QVTIDCPERGLLLLRVRDEYRM 95 (189)
T ss_pred HHHhCcHHHhHHHHHHHHHHHH
Confidence 3567888888876665554444
No 84
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=60.56 E-value=2.6e+02 Score=30.64 Aligned_cols=34 Identities=26% Similarity=0.210 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 590 ELQRRVLKAEAALREKEEENDILHQRLQQYESRW 623 (793)
Q Consensus 590 ~l~~r~~~~e~~l~~~e~e~~~L~~~L~~~e~~~ 623 (793)
.++-.+..+..+.+++++|.+.|-++|.+.-+..
T Consensus 145 ~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layq 178 (401)
T PF06785_consen 145 CLQLQLDALQQECGEKEEESQTLNRELAEALAYQ 178 (401)
T ss_pred HHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHH
Confidence 3344444555555556666655555555444333
No 85
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=60.08 E-value=1.5e+02 Score=27.75 Aligned_cols=49 Identities=18% Similarity=0.304 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 594 RVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMR 642 (793)
Q Consensus 594 r~~~~e~~l~~~e~e~~~L~~~L~~~e~~~~ele~k~~~~ee~~qkq~~ 642 (793)
++..++.++.+++.+...+-+-+.+-..+..|++.-+..+.++.+.|..
T Consensus 69 ~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~myr~Qi~ 117 (120)
T PF12325_consen 69 EVEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQDLKEMYREQID 117 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555566666666666666666655544
No 86
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=60.02 E-value=48 Score=30.36 Aligned_cols=36 Identities=25% Similarity=0.254 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 587 FLAELQRRVLKAEAALREKEEENDILHQRLQQYESR 622 (793)
Q Consensus 587 ~l~~l~~r~~~~e~~l~~~e~e~~~L~~~L~~~e~~ 622 (793)
.+..+-..+.+++..+.++.+||+.|+-+++.+..+
T Consensus 16 ~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~ 51 (107)
T PF06156_consen 16 QLGQLLEELEELKKQLQELLEENARLRIENEHLRER 51 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444444433
No 87
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=59.92 E-value=1.2e+02 Score=30.98 Aligned_cols=27 Identities=30% Similarity=0.490 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 597 KAEAALREKEEENDILHQRLQQYESRW 623 (793)
Q Consensus 597 ~~e~~l~~~e~e~~~L~~~L~~~e~~~ 623 (793)
.+...+..++.++.+|+.++..+++..
T Consensus 59 ~L~epL~~a~~e~~eL~k~L~~y~kdK 85 (201)
T PF13851_consen 59 RLSEPLKKAEEEVEELRKQLKNYEKDK 85 (201)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444443333
No 88
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=59.73 E-value=1e+02 Score=25.72 Aligned_cols=44 Identities=25% Similarity=0.487 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Q 003826 602 LREKEEENDILHQRLQQYESRWSEYEQKMKSME---EVWQKQMRSLQ 645 (793)
Q Consensus 602 l~~~e~e~~~L~~~L~~~e~~~~ele~k~~~~e---e~~qkq~~~lq 645 (793)
+.++.++|..|+++.+.....+..++..-.++. ..||..+.+|-
T Consensus 27 ieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsLL 73 (79)
T COG3074 27 IEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRALL 73 (79)
T ss_pred HHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555544444444444433333 33555555443
No 89
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=59.68 E-value=2.8e+02 Score=32.71 Aligned_cols=103 Identities=13% Similarity=0.170 Sum_probs=49.2
Q ss_pred HHHHHHhhhhHHHHHHHHHhhHHHHhhhhh--hhhhHhHhhhcCChhHHHHHHHHHHHHHHHHHHHHHH----------H
Q 003826 535 ARQKLKNIKYSSIMIQSVIRGWLVRRCSGD--ICLLKSVESKGNDSDEVLVKASFLAELQRRVLKAEAA----------L 602 (793)
Q Consensus 535 ~R~~~~~~r~aai~IQs~~Rg~~aRr~~~~--l~~~~~~~~~~~~~~~~~~~~~~l~~l~~r~~~~e~~----------l 602 (793)
-|+.+..++.-+.+.|++.-++..+++-.. +..+ ..++.....++..++.....+... +
T Consensus 264 lre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l---------~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dv 334 (581)
T KOG0995|consen 264 LREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEML---------KSEIEEKEEEIEKLQKENDELKKQIELQGISGEDV 334 (581)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 455566666677777877777766655421 1111 112222233333333333333222 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 603 REKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQS 646 (793)
Q Consensus 603 ~~~e~e~~~L~~~L~~~e~~~~ele~k~~~~ee~~qkq~~~lq~ 646 (793)
+....|..+|++.|...+.+...+..++-..+-+.+....+++.
T Consensus 335 e~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l~~~~~f~~le~ 378 (581)
T KOG0995|consen 335 ERMNLERNKLKRELNKIQSELDRLSKEVWELKLEIEDFFKELEK 378 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 33444555555555555555555555554444444444444443
No 90
>PF15294 Leu_zip: Leucine zipper
Probab=59.29 E-value=1.1e+02 Score=32.90 Aligned_cols=78 Identities=18% Similarity=0.229 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHH
Q 003826 580 EVLVKASFLAELQRRVLKAEAALREKEEENDILHQRLQQYES----------------RWSEYEQKMKSMEEVWQKQMRS 643 (793)
Q Consensus 580 ~~~~~~~~l~~l~~r~~~~e~~l~~~e~e~~~L~~~L~~~e~----------------~~~ele~k~~~~ee~~qkq~~~ 643 (793)
++..+..+-..++.|+..++......-+|...|+.+|..++. ...++|.+|..+..+.++.+..
T Consensus 133 Ei~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~~~~~k~~~~~~~q~l~dLE~k~a~lK~e~ek~~~d 212 (278)
T PF15294_consen 133 EIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDEQGDQKGKKDLSFKAQDLSDLENKMAALKSELEKALQD 212 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccchhhHHHHHHHHHHHHHHHHHH
Confidence 444445555555555555555555555556666666665554 2356777777777776666655
Q ss_pred HHHHHHHHHHhccc
Q 003826 644 LQSSLSIAKKSLAI 657 (793)
Q Consensus 644 lq~~L~a~~~sla~ 657 (793)
...++.+.+..|..
T Consensus 213 ~~~~~k~L~e~L~~ 226 (278)
T PF15294_consen 213 KESQQKALEETLQS 226 (278)
T ss_pred HHHHHHHHHHHHHH
Confidence 55555555555443
No 91
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=58.91 E-value=1.2e+02 Score=30.80 Aligned_cols=7 Identities=29% Similarity=0.301 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 003826 642 RSLQSSL 648 (793)
Q Consensus 642 ~~lq~~L 648 (793)
..++...
T Consensus 162 ~~lks~~ 168 (190)
T PF05266_consen 162 SRLKSEA 168 (190)
T ss_pred HHHHHHH
Confidence 3333333
No 92
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=58.79 E-value=32 Score=32.70 Aligned_cols=52 Identities=27% Similarity=0.364 Sum_probs=43.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 578 SDEVLVKASFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQK 629 (793)
Q Consensus 578 ~~~~~~~~~~l~~l~~r~~~~e~~l~~~e~e~~~L~~~L~~~e~~~~ele~k 629 (793)
..++..+.+.+...+..+.++++++..+..|+..|+++|......+..++.|
T Consensus 79 ~a~~~e~qsli~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~~n~~Lekr 130 (131)
T PF04859_consen 79 AAEIQEQQSLIKTYEIVVKKLEAELRAKDSEIDRLREKLDELNRANKSLEKR 130 (131)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4566777778888888888999999999999999999999988888877765
No 93
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=57.92 E-value=45 Score=38.36 Aligned_cols=55 Identities=18% Similarity=0.206 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 583 VKASFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVW 637 (793)
Q Consensus 583 ~~~~~l~~l~~r~~~~e~~l~~~e~e~~~L~~~L~~~e~~~~ele~k~~~~ee~~ 637 (793)
+..+.+.+-|.+..++|+++..++.|++.+..+++.++.+++++++....+++++
T Consensus 66 VnqSALteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 66 VRQHATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555555555555555555555555555555555555444
No 94
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=55.84 E-value=1.2e+02 Score=33.78 Aligned_cols=22 Identities=23% Similarity=0.303 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHhcccc
Q 003826 637 WQKQMRSLQSSLSIAKKSLAID 658 (793)
Q Consensus 637 ~qkq~~~lq~~L~a~~~sla~~ 658 (793)
+.+++++.+.+++..+.+++..
T Consensus 361 L~keLeekkreleql~~q~~v~ 382 (442)
T PF06637_consen 361 LAKELEEKKRELEQLKMQLAVK 382 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 4444445555555555555443
No 95
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=55.74 E-value=1.3e+02 Score=25.82 Aligned_cols=28 Identities=29% Similarity=0.379 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 604 EKEEENDILHQRLQQYESRWSEYEQKMK 631 (793)
Q Consensus 604 ~~e~e~~~L~~~L~~~e~~~~ele~k~~ 631 (793)
+++++|..|.++.+.....+.+++..-.
T Consensus 29 ELKekn~~L~~e~~~~~~~r~~L~~en~ 56 (79)
T PRK15422 29 ELKEKNNSLSQEVQNAQHQREELERENN 56 (79)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3334444444444443333444443333
No 96
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=55.72 E-value=15 Score=41.28 Aligned_cols=31 Identities=26% Similarity=0.316 Sum_probs=19.1
Q ss_pred HHHHHHHHHhhhHHHHHHHHhhhhHHHHHHHH
Q 003826 521 RAAVVIQRQIKSRVARQKLKNIKYSSIMIQSV 552 (793)
Q Consensus 521 ~AAi~IQ~~~R~~~~R~~~~~~r~aai~IQs~ 552 (793)
+||+.||+|+|+|.+|...++. .+....|+.
T Consensus 18 kaAilIQkWYRr~~ARle~rrr-~twqIFqsl 48 (631)
T KOG0377|consen 18 KAAILIQKWYRRYEARLEARRR-CTWQIFQSL 48 (631)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-hHHHHHhHH
Confidence 4778888888888777665442 333334443
No 97
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=55.23 E-value=1.2e+02 Score=24.95 Aligned_cols=40 Identities=25% Similarity=0.375 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 588 LAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYE 627 (793)
Q Consensus 588 l~~l~~r~~~~e~~l~~~e~e~~~L~~~L~~~e~~~~ele 627 (793)
+.+.+.....++.++.+.+..|.+|..++..++.+..++.
T Consensus 20 L~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 20 LTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3333334445555555566666666666655555554443
No 98
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=55.01 E-value=1.3e+02 Score=30.90 Aligned_cols=52 Identities=27% Similarity=0.363 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 587 FLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQ 638 (793)
Q Consensus 587 ~l~~l~~r~~~~e~~l~~~e~e~~~L~~~L~~~e~~~~ele~k~~~~ee~~q 638 (793)
.+..+..++..++.++..++.+.+.|.+++..++.++.++..+......+.+
T Consensus 87 ~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evq 138 (201)
T PF13851_consen 87 SLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQ 138 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556777788888889999999999999999999988888776655543
No 99
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=54.53 E-value=2.1e+02 Score=27.60 Aligned_cols=57 Identities=26% Similarity=0.243 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 583 VKASFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQK 639 (793)
Q Consensus 583 ~~~~~l~~l~~r~~~~e~~l~~~e~e~~~L~~~L~~~e~~~~ele~k~~~~ee~~qk 639 (793)
........+...+..++..+..++.++...+.+...++.....++..++...+++++
T Consensus 63 ~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~k 119 (151)
T PF11559_consen 63 RLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQK 119 (151)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555556666666666666666666666666666666666655533
No 100
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=54.50 E-value=4.6e+02 Score=32.21 Aligned_cols=31 Identities=29% Similarity=0.395 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 589 AELQRRVLKAEAALREKEEENDILHQRLQQY 619 (793)
Q Consensus 589 ~~l~~r~~~~e~~l~~~e~e~~~L~~~L~~~ 619 (793)
.+|+.++.+++.++..+|+.+..|+.+++++
T Consensus 548 ~~lE~E~~~lr~elk~kee~~~~~e~~~~~l 578 (697)
T PF09726_consen 548 RQLESELKKLRRELKQKEEQIRELESELQEL 578 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555555555433
No 101
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=54.30 E-value=86 Score=36.08 Aligned_cols=38 Identities=24% Similarity=0.274 Sum_probs=18.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 579 DEVLVKASFLAELQRRVLKAEAALREKEEENDILHQRL 616 (793)
Q Consensus 579 ~~~~~~~~~l~~l~~r~~~~e~~l~~~e~e~~~L~~~L 616 (793)
..++-+-..+.+++.++..+.++-+.+.+||+.|+++.
T Consensus 59 DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~ 96 (472)
T TIGR03752 59 DTLRTLVAEVKELRKRLAKLISENEALKAENERLQKRE 96 (472)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444444444555555555555555555555554433
No 102
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=52.91 E-value=94 Score=31.46 Aligned_cols=23 Identities=17% Similarity=0.349 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 003826 597 KAEAALREKEEENDILHQRLQQY 619 (793)
Q Consensus 597 ~~e~~l~~~e~e~~~L~~~L~~~ 619 (793)
++.+++..++.+..+|+.+++..
T Consensus 73 ~l~~~~~~~~~~i~~l~~~i~~~ 95 (188)
T PF03962_consen 73 KLQKEIEELEKKIEELEEKIEEA 95 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333344444444333
No 103
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=52.24 E-value=63 Score=34.21 Aligned_cols=52 Identities=13% Similarity=0.194 Sum_probs=40.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 579 DEVLVKASFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKM 630 (793)
Q Consensus 579 ~~~~~~~~~l~~l~~r~~~~e~~l~~~e~e~~~L~~~L~~~e~~~~ele~k~ 630 (793)
.-+.+....+.+.+.|..++|++++...+++..|+.+++.++..+..|=+|+
T Consensus 79 siLpIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKi 130 (248)
T PF08172_consen 79 SILPIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKI 130 (248)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466677888888889999999998888888888888888887765444443
No 104
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=52.22 E-value=77 Score=29.21 Aligned_cols=38 Identities=24% Similarity=0.189 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 586 SFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRW 623 (793)
Q Consensus 586 ~~l~~l~~r~~~~e~~l~~~e~e~~~L~~~L~~~e~~~ 623 (793)
..+..+-..+..++..+.++.+||+.|+-+++.+..+.
T Consensus 15 ~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l 52 (110)
T PRK13169 15 QNLGVLLKELGALKKQLAELLEENTALRLENDKLRERL 52 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444445555555555555554444444433
No 105
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=52.22 E-value=3.6e+02 Score=29.65 Aligned_cols=51 Identities=18% Similarity=0.295 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 587 FLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVW 637 (793)
Q Consensus 587 ~l~~l~~r~~~~e~~l~~~e~e~~~L~~~L~~~e~~~~ele~k~~~~ee~~ 637 (793)
...+...+...+|.-+..+++||+.|+-+|+.+..+..|.|+.-.++..++
T Consensus 121 vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrEL 171 (401)
T PF06785_consen 121 VFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNREL 171 (401)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHH
Confidence 344444455566677777778888888888777777776666665554444
No 106
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=52.11 E-value=1.6e+02 Score=26.78 Aligned_cols=48 Identities=19% Similarity=0.284 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 587 FLAELQRRVLKAEAALREK--EEENDILHQRLQQYESRWSEYEQKMKSME 634 (793)
Q Consensus 587 ~l~~l~~r~~~~e~~l~~~--e~e~~~L~~~L~~~e~~~~ele~k~~~~e 634 (793)
.+....+|+..+|.++..+ .+++..|+-++.+++.+..++++++..+.
T Consensus 43 ~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~ 92 (106)
T PF10805_consen 43 RLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVS 92 (106)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3444455555555555554 45555555555555555555555554443
No 107
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=52.06 E-value=1.4e+02 Score=27.32 Aligned_cols=42 Identities=17% Similarity=0.298 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 591 LQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKS 632 (793)
Q Consensus 591 l~~r~~~~e~~l~~~e~e~~~L~~~L~~~e~~~~ele~k~~~ 632 (793)
|......++..+..+..++....+.+..++.+..|....+..
T Consensus 35 L~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~ 76 (107)
T PF09304_consen 35 LAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLED 76 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444555544444444444433
No 108
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=52.01 E-value=1.6e+02 Score=28.95 Aligned_cols=57 Identities=21% Similarity=0.376 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 594 RVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSLSI 650 (793)
Q Consensus 594 r~~~~e~~l~~~e~e~~~L~~~L~~~e~~~~ele~k~~~~ee~~qkq~~~lq~~L~a 650 (793)
+....+.++..+..++..|..+...........+.++..+++.|......|...++.
T Consensus 44 ~n~~~~~e~~~L~~d~e~L~~q~~~ek~~r~~~e~~l~~~Ed~~~~e~k~L~~~v~~ 100 (158)
T PF09744_consen 44 RNQEHEVELELLREDNEQLETQYEREKELRKQAEEELLELEDQWRQERKDLQSQVEQ 100 (158)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445556666667777777666666666666777777777776655555554443
No 109
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=51.90 E-value=15 Score=43.68 Aligned_cols=28 Identities=25% Similarity=0.313 Sum_probs=23.6
Q ss_pred HHHHHHHHhhhHHHHHHHHhhhhHHHHH
Q 003826 522 AAVVIQRQIKSRVARQKLKNIKYSSIMI 549 (793)
Q Consensus 522 AAi~IQ~~~R~~~~R~~~~~~r~aai~I 549 (793)
-|..||+.||.+++|+.|.++|.-+..+
T Consensus 698 ~A~~IQkAWRrfv~rrky~k~ree~t~l 725 (1106)
T KOG0162|consen 698 MARRIQKAWRRFVARRKYEKMREEATKL 725 (1106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999998765544
No 110
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=51.51 E-value=1.3e+02 Score=35.51 Aligned_cols=14 Identities=29% Similarity=0.218 Sum_probs=7.1
Q ss_pred cchhhhhHHHHHhh
Q 003826 699 LSVISRLAEEFDQR 712 (793)
Q Consensus 699 ~~~~~~l~~e~~~~ 712 (793)
.....+-+++|...
T Consensus 576 ~~~s~~A~e~f~~~ 589 (652)
T COG2433 576 EEMSHAAAEEFFKN 589 (652)
T ss_pred CccchHHHHHHhhc
Confidence 33345556666443
No 111
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=51.31 E-value=2.4e+02 Score=34.69 Aligned_cols=35 Identities=31% Similarity=0.360 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 003826 623 WSEYEQKMKSMEEVWQKQMRSLQSSLSIAKKSLAI 657 (793)
Q Consensus 623 ~~ele~k~~~~ee~~qkq~~~lq~~L~a~~~sla~ 657 (793)
.++.|.+|+++-+.++.++..++..++.+++-+..
T Consensus 630 LS~AEr~~~~EL~~~~~~l~~l~~si~~lk~k~~~ 664 (717)
T PF10168_consen 630 LSEAEREFKKELERMKDQLQDLKASIEQLKKKLDY 664 (717)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666666666665543
No 112
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=51.11 E-value=1.7e+02 Score=33.28 Aligned_cols=7 Identities=14% Similarity=0.050 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 003826 595 VLKAEAA 601 (793)
Q Consensus 595 ~~~~e~~ 601 (793)
...+|..
T Consensus 260 ~erLEeq 266 (395)
T PF10267_consen 260 YERLEEQ 266 (395)
T ss_pred HHHHHHH
Confidence 3333333
No 113
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=50.73 E-value=1.3e+02 Score=29.30 Aligned_cols=56 Identities=18% Similarity=0.179 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 588 LAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRS 643 (793)
Q Consensus 588 l~~l~~r~~~~e~~l~~~e~e~~~L~~~L~~~e~~~~ele~k~~~~ee~~qkq~~~ 643 (793)
...+++.+......+..+++|+...+..++.......+++..++..+.+|.++...
T Consensus 29 ~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~ 84 (160)
T PF13094_consen 29 KRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKK 84 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34445555555566666777777777777777777777777777777766544433
No 114
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=50.57 E-value=1.2e+02 Score=24.60 Aligned_cols=27 Identities=30% Similarity=0.407 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 597 KAEAALREKEEENDILHQRLQQYESRW 623 (793)
Q Consensus 597 ~~e~~l~~~e~e~~~L~~~L~~~e~~~ 623 (793)
.++..+..++.+|..|..++..++...
T Consensus 30 ~Le~~~~~L~~en~~L~~~~~~L~~~~ 56 (64)
T PF00170_consen 30 ELEEKVEELESENEELKKELEQLKKEI 56 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444333
No 115
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=49.47 E-value=1.6e+02 Score=31.23 Aligned_cols=67 Identities=25% Similarity=0.340 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHhc
Q 003826 589 AELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEE----------VWQKQMRSLQSSLSIAKKSL 655 (793)
Q Consensus 589 ~~l~~r~~~~e~~l~~~e~e~~~L~~~L~~~e~~~~ele~k~~~~ee----------~~qkq~~~lq~~L~a~~~sl 655 (793)
..|+.+..+++.....++........+-..++.+..+++..+..+++ .|+.+....+..+..++..|
T Consensus 50 ~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~~ak~~L 126 (246)
T PF00769_consen 50 EELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEAEIARLEEESERKEEEAEELQEELEEAREDEEEAKEEL 126 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444333333333333344444444444443333 24444444444444444444
No 116
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=49.23 E-value=1.6e+02 Score=31.42 Aligned_cols=36 Identities=17% Similarity=0.355 Sum_probs=19.9
Q ss_pred hhhHHHHHhhhcccccccceeeeecCCcc--cCCCCCHH
Q 003826 703 SRLAEEFDQRSQVFGDDAKFLVEVKSGQV--EASLNPDK 739 (793)
Q Consensus 703 ~~l~~e~~~~~q~~~~~~~~~~e~~~~~~--~~~~~~~~ 739 (793)
....+|.+-|+. .+-..++|---+..++ .+.||+.|
T Consensus 169 ekynkeveerkr-le~e~k~lq~k~~~q~~~qstmsHRd 206 (307)
T PF10481_consen 169 EKYNKEVEERKR-LEAEVKALQAKKASQAAPQSTMSHRD 206 (307)
T ss_pred HHHHHHHHHHhh-HHHHHHHHhcccCCCcCccccccHHH
Confidence 445667777776 4555555443334444 55676554
No 117
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=49.11 E-value=1e+02 Score=33.79 Aligned_cols=36 Identities=28% Similarity=0.428 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 613 HQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSL 648 (793)
Q Consensus 613 ~~~L~~~e~~~~ele~k~~~~ee~~qkq~~~lq~~L 648 (793)
+..|...+++..+-..++..|++.++.++.++++..
T Consensus 234 q~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~ni 269 (365)
T KOG2391|consen 234 QESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNI 269 (365)
T ss_pred HHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhh
Confidence 333333333344444444444444444444444443
No 118
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=48.86 E-value=1.5e+02 Score=32.88 Aligned_cols=60 Identities=20% Similarity=0.205 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Q 003826 594 RVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKM----KSMEEVWQKQMRSLQSSLSIAKK 653 (793)
Q Consensus 594 r~~~~e~~l~~~e~e~~~L~~~L~~~e~~~~ele~k~----~~~ee~~qkq~~~lq~~L~a~~~ 653 (793)
+...+..+...++.+...+..+|+++.....++|..+ ..+--+.+..+.+|+..|+.++.
T Consensus 145 ~~~~L~~enerL~~e~~~~~~qlE~~v~~K~~~E~~L~~KF~~vLNeKK~KIR~lq~~L~~~~~ 208 (342)
T PF06632_consen 145 ENEHLQKENERLESEANKLLKQLEKFVNAKEEHEEDLYAKFVLVLNEKKAKIRELQRLLASAKE 208 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhc
Confidence 3334444455556666666666666666666666443 22333444667777777777765
No 119
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=47.73 E-value=2.9e+02 Score=29.90 Aligned_cols=49 Identities=20% Similarity=0.305 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 603 REKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSLSIA 651 (793)
Q Consensus 603 ~~~e~e~~~L~~~L~~~e~~~~ele~k~~~~ee~~qkq~~~lq~~L~a~ 651 (793)
..+..++..|+.....++.+..+++.......+.++..+..++.++...
T Consensus 226 ~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l 274 (312)
T PF00038_consen 226 QSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAEL 274 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHH
Confidence 3333333333333333333333333333333333333333333333333
No 120
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=47.55 E-value=1.9e+02 Score=33.48 Aligned_cols=46 Identities=20% Similarity=0.232 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 586 SFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMK 631 (793)
Q Consensus 586 ~~l~~l~~r~~~~e~~l~~~e~e~~~L~~~L~~~e~~~~ele~k~~ 631 (793)
.-++.|--++.+++.++..+..+|..|+.+++.++++......++.
T Consensus 59 DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~ 104 (472)
T TIGR03752 59 DTLRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQ 104 (472)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 4566667778888888888888888888888888776655554443
No 121
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=47.45 E-value=1e+02 Score=25.69 Aligned_cols=38 Identities=13% Similarity=0.265 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 594 RVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMK 631 (793)
Q Consensus 594 r~~~~e~~l~~~e~e~~~L~~~L~~~e~~~~ele~k~~ 631 (793)
|+.+++.++.=.++-+++|.+.+..-..++..++..+.
T Consensus 5 Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~ 42 (69)
T PF04102_consen 5 RIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLR 42 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444343333333333333333
No 122
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=46.78 E-value=4.8e+02 Score=29.91 Aligned_cols=12 Identities=17% Similarity=0.418 Sum_probs=6.3
Q ss_pred cceeEEeecCCC
Q 003826 152 GRSISILDIYGF 163 (793)
Q Consensus 152 ~~~IgILDI~GF 163 (793)
+..+.||-+|-+
T Consensus 74 ~~mLcilaVP~~ 85 (493)
T KOG0804|consen 74 STMLCILAVPAY 85 (493)
T ss_pred CcEEEEEecccc
Confidence 345555555543
No 123
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=46.28 E-value=3.3e+02 Score=27.60 Aligned_cols=12 Identities=17% Similarity=0.255 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHH
Q 003826 642 RSLQSSLSIAKK 653 (793)
Q Consensus 642 ~~lq~~L~a~~~ 653 (793)
..+..++..++-
T Consensus 169 ~~l~~~~~~~e~ 180 (190)
T PF05266_consen 169 EALKEEIENAEL 180 (190)
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
No 124
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=46.02 E-value=1.7e+02 Score=35.50 Aligned_cols=7 Identities=14% Similarity=0.415 Sum_probs=2.6
Q ss_pred HHHHhhh
Q 003826 526 IQRQIKS 532 (793)
Q Consensus 526 IQ~~~R~ 532 (793)
|...+.+
T Consensus 171 l~~Ai~~ 177 (650)
T TIGR03185 171 LKEAIEV 177 (650)
T ss_pred HHHHHHH
Confidence 3333333
No 125
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=45.93 E-value=2.4e+02 Score=30.96 Aligned_cols=26 Identities=35% Similarity=0.414 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 588 LAELQRRVLKAEAALREKEEENDILH 613 (793)
Q Consensus 588 l~~l~~r~~~~e~~l~~~e~e~~~L~ 613 (793)
+..++....++.+++..++.+...+.
T Consensus 66 L~~LE~e~~~l~~el~~le~e~~~l~ 91 (314)
T PF04111_consen 66 LEELEKEREELDQELEELEEELEELD 91 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444444444433
No 126
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.22 E-value=1.3e+02 Score=31.82 Aligned_cols=55 Identities=13% Similarity=0.112 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 003826 605 KEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSLSIAKKSLAIDD 659 (793)
Q Consensus 605 ~e~e~~~L~~~L~~~e~~~~ele~k~~~~ee~~qkq~~~lq~~L~a~~~sla~~~ 659 (793)
+.+++..++++..++..+..+|+.++++....-......++..++..+......+
T Consensus 55 L~~e~~s~Q~~~~~L~~ev~~~~~~~~s~~~~~~t~~~~ie~~l~~l~~~aG~v~ 109 (247)
T COG3879 55 LVKELRSLQKKVNTLAAEVEDLENKLDSVRRSVLTDDAALEDRLEKLRMLAGSVP 109 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHhccCC
Confidence 3344444555555555555555555555552222222344556666666665544
No 127
>smart00338 BRLZ basic region leucin zipper.
Probab=44.50 E-value=1.4e+02 Score=24.38 Aligned_cols=30 Identities=17% Similarity=0.329 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 597 KAEAALREKEEENDILHQRLQQYESRWSEY 626 (793)
Q Consensus 597 ~~e~~l~~~e~e~~~L~~~L~~~e~~~~el 626 (793)
.++.++..++.+|..|..++..++.+...+
T Consensus 30 ~Le~~~~~L~~en~~L~~~~~~l~~e~~~l 59 (65)
T smart00338 30 ELERKVEQLEAENERLKKEIERLRRELEKL 59 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444555544444444444333
No 128
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=44.37 E-value=1.3e+02 Score=29.69 Aligned_cols=51 Identities=24% Similarity=0.287 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHH
Q 003826 596 LKAEAALREKEEENDILHQRLQQYESRWSEYEQKM-----KSMEEVWQKQMRSLQS 646 (793)
Q Consensus 596 ~~~e~~l~~~e~e~~~L~~~L~~~e~~~~ele~k~-----~~~ee~~qkq~~~lq~ 646 (793)
.+++.+|.+.|+|+.-|++-|...+++..|+..++ ..+.+.+.+-+...+.
T Consensus 32 eeLr~EL~KvEeEI~TLrqvL~aKer~~~eLKrkLGit~l~elkqnlskg~~~vq~ 87 (162)
T PF04201_consen 32 EELRSELAKVEEEIQTLRQVLAAKERHCAELKRKLGITPLSELKQNLSKGWHDVQD 87 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCCchHHHHHHHHHHHhHhhhc
Confidence 45566777778888888888888888888888774 3444444444444443
No 129
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=44.05 E-value=2.3e+02 Score=25.77 Aligned_cols=36 Identities=19% Similarity=0.166 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 587 FLAELQRRVLKAEAALREKEEENDILHQRLQQYESR 622 (793)
Q Consensus 587 ~l~~l~~r~~~~e~~l~~~e~e~~~L~~~L~~~e~~ 622 (793)
....++.++..++.+...+...|.+|..++..+..+
T Consensus 11 ~~~~l~~~L~~v~~~~l~l~~~n~el~~el~~l~~~ 46 (106)
T PF05837_consen 11 ESRSLQEKLSDVEKKRLRLKRRNQELAQELLELAEK 46 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555555555555544433
No 130
>PRK00295 hypothetical protein; Provisional
Probab=43.64 E-value=1.9e+02 Score=24.14 Aligned_cols=29 Identities=14% Similarity=0.100 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 595 VLKAEAALREKEEENDILHQRLQQYESRW 623 (793)
Q Consensus 595 ~~~~e~~l~~~e~e~~~L~~~L~~~e~~~ 623 (793)
+.++|.++.=.++-+.+|-+.+.+-.+++
T Consensus 7 i~~LE~kla~qE~tie~Ln~~v~~Qq~~I 35 (68)
T PRK00295 7 VTELESRQAFQDDTIQALNDVLVEQQRVI 35 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444333333444433333333333
No 131
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=43.15 E-value=2.8e+02 Score=29.27 Aligned_cols=50 Identities=22% Similarity=0.276 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 588 LAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVW 637 (793)
Q Consensus 588 l~~l~~r~~~~e~~l~~~e~e~~~L~~~L~~~e~~~~ele~k~~~~ee~~ 637 (793)
...+..+...++.++..++..+..++..+...+.++.+++.++..+++..
T Consensus 51 ~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~ 100 (251)
T PF11932_consen 51 KQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETR 100 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555555555555555555555555555555555444
No 132
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=43.04 E-value=1.5e+02 Score=24.92 Aligned_cols=46 Identities=17% Similarity=0.303 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 591 LQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEV 636 (793)
Q Consensus 591 l~~r~~~~e~~l~~~e~e~~~L~~~L~~~e~~~~ele~k~~~~ee~ 636 (793)
++.++...+.++...++....|+......+.+...+..+++++++.
T Consensus 4 i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n 49 (71)
T PF10779_consen 4 IKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKSN 49 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556666666666666666666666666666666666666654
No 133
>PRK12704 phosphodiesterase; Provisional
Probab=42.90 E-value=6.3e+02 Score=29.85 Aligned_cols=9 Identities=0% Similarity=0.025 Sum_probs=3.6
Q ss_pred hHHHHHhhh
Q 003826 705 LAEEFDQRS 713 (793)
Q Consensus 705 l~~e~~~~~ 713 (793)
.-+-||+=+
T Consensus 232 nir~~e~~t 240 (520)
T PRK12704 232 NIRALETLT 240 (520)
T ss_pred hHHHHHHHh
Confidence 334444433
No 134
>PRK04406 hypothetical protein; Provisional
Probab=42.62 E-value=2.1e+02 Score=24.43 Aligned_cols=32 Identities=22% Similarity=0.208 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 592 QRRVLKAEAALREKEEENDILHQRLQQYESRW 623 (793)
Q Consensus 592 ~~r~~~~e~~l~~~e~e~~~L~~~L~~~e~~~ 623 (793)
..|+..+|.++.=.+.-+++|-+.+..-.+++
T Consensus 10 e~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I 41 (75)
T PRK04406 10 EERINDLECQLAFQEQTIEELNDALSQQQLLI 41 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444443333333
No 135
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=42.54 E-value=2.7e+02 Score=25.39 Aligned_cols=52 Identities=15% Similarity=0.249 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 587 FLAELQRRVLKAEAALREKEEENDIL--HQRLQQYESRWSEYEQKMKSMEEVWQ 638 (793)
Q Consensus 587 ~l~~l~~r~~~~e~~l~~~e~e~~~L--~~~L~~~e~~~~ele~k~~~~ee~~q 638 (793)
.+..++.++...+.++..+|.++..| ++++..++.+..+++..++.+++..+
T Consensus 36 ~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~ 89 (106)
T PF10805_consen 36 DIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQ 89 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 45567778888888888899988888 88899999888888888888888874
No 136
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=42.18 E-value=3.4e+02 Score=28.36 Aligned_cols=35 Identities=29% Similarity=0.304 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 602 LREKEEENDILHQRLQQYESRWSEYEQKMKSMEEV 636 (793)
Q Consensus 602 l~~~e~e~~~L~~~L~~~e~~~~ele~k~~~~ee~ 636 (793)
....++.+..|..+|...+.+....+.++..++..
T Consensus 171 e~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~ 205 (237)
T PF00261_consen 171 EDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKE 205 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555555554444444444433
No 137
>PRK00736 hypothetical protein; Provisional
Probab=41.96 E-value=1.8e+02 Score=24.32 Aligned_cols=24 Identities=21% Similarity=0.315 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 595 VLKAEAALREKEEENDILHQRLQQ 618 (793)
Q Consensus 595 ~~~~e~~l~~~e~e~~~L~~~L~~ 618 (793)
+.++|.++.=.+.-+++|-+.+.+
T Consensus 7 i~~LE~klafqe~tie~Ln~~v~~ 30 (68)
T PRK00736 7 LTELEIRVAEQEKTIEELSDQLAE 30 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344433333333333333333
No 138
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=41.88 E-value=4.5e+02 Score=27.89 Aligned_cols=19 Identities=26% Similarity=0.420 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHhccc
Q 003826 639 KQMRSLQSSLSIAKKSLAI 657 (793)
Q Consensus 639 kq~~~lq~~L~a~~~sla~ 657 (793)
..+..++..+...+..+..
T Consensus 133 ~~l~~l~~~l~~~r~~l~~ 151 (302)
T PF10186_consen 133 QRLSQLQSQLARRRRQLIQ 151 (302)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344455556655555544
No 139
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=41.86 E-value=1.4e+02 Score=32.15 Aligned_cols=36 Identities=17% Similarity=0.121 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 596 LKAEAALREKEEENDILHQRLQQYESRWSEYEQKMK 631 (793)
Q Consensus 596 ~~~e~~l~~~e~e~~~L~~~L~~~e~~~~ele~k~~ 631 (793)
..++-++..++.+|++|+.+...+++++..+..-+.
T Consensus 251 E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~ 286 (294)
T KOG4571|consen 251 EALLGELEGLEKRNEELKDQASELEREIRYLKQLIL 286 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566667777777777777777777665554443
No 140
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=41.78 E-value=2e+02 Score=35.22 Aligned_cols=49 Identities=18% Similarity=0.178 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 003826 603 REKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSLSIAKKSL 655 (793)
Q Consensus 603 ~~~e~e~~~L~~~L~~~e~~~~ele~k~~~~ee~~qkq~~~lq~~L~a~~~sl 655 (793)
.+++.++..|....+........+|.|+..+.... ..++.+|.+.+++.
T Consensus 470 e~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R----~~lEkQL~eErk~r 518 (697)
T PF09726_consen 470 EQLQNKLQNLVQARQQDKQSLQQLEKRLAEERRQR----ASLEKQLQEERKAR 518 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 33333344444444444444444444444443333 44445555555443
No 141
>PRK02119 hypothetical protein; Provisional
Probab=41.72 E-value=2e+02 Score=24.37 Aligned_cols=32 Identities=19% Similarity=0.149 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 592 QRRVLKAEAALREKEEENDILHQRLQQYESRW 623 (793)
Q Consensus 592 ~~r~~~~e~~l~~~e~e~~~L~~~L~~~e~~~ 623 (793)
..|+.++|.++.=.++-+.+|-+.+.+-.+++
T Consensus 8 e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~i 39 (73)
T PRK02119 8 ENRIAELEMKIAFQENLLEELNQALIEQQFVI 39 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444333333
No 142
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=41.62 E-value=2.6e+02 Score=33.08 Aligned_cols=34 Identities=21% Similarity=0.332 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 604 EKEEENDILHQRLQQYESRWSEYEQKMKSMEEVW 637 (793)
Q Consensus 604 ~~e~e~~~L~~~L~~~e~~~~ele~k~~~~ee~~ 637 (793)
.+....+.+..+...+..+..+...++..+++..
T Consensus 196 el~~~~e~l~~E~~~L~~q~~e~~~ri~~LEedi 229 (546)
T PF07888_consen 196 ELTESSEELKEERESLKEQLAEARQRIRELEEDI 229 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444455555555555555544
No 143
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=41.56 E-value=1.2e+02 Score=29.87 Aligned_cols=23 Identities=26% Similarity=0.709 Sum_probs=13.6
Q ss_pred HHHHHHHHHhHHHHHhHHHHhhH
Q 003826 738 DKELRRLKQMFEAWKKDYGSRLR 760 (793)
Q Consensus 738 ~~el~~lk~~f~~wkk~~~~rl~ 760 (793)
.+|..++...|..|.+.|+.|=|
T Consensus 144 ~ee~~~~~~~~~~~~k~w~kRKr 166 (169)
T PF07106_consen 144 PEEKEKLEKEYKKWRKEWKKRKR 166 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666543
No 144
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=41.13 E-value=2.6e+02 Score=31.69 Aligned_cols=76 Identities=26% Similarity=0.327 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 003826 580 EVLVKASFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSLSIAKKSLAID 658 (793)
Q Consensus 580 ~~~~~~~~l~~l~~r~~~~e~~l~~~e~e~~~L~~~L~~~e~~~~ele~k~~~~ee~~qkq~~~lq~~L~a~~~sla~~ 658 (793)
.++.....+.++|+++.+++.+-+...-|...|+..+.+ --+..|+.+=. +.+...++++.+..+|+.|.+.|...
T Consensus 253 ~Lq~aEqsl~dlQk~Lekar~e~rnvavek~~lerkl~e-a~rl~elreg~--e~e~~rkelE~lR~~L~kAEkele~n 328 (575)
T KOG4403|consen 253 GLQRAEQSLEDLQKRLEKAREEQRNVAVEKLDLERKLDE-APRLSELREGV--ENETSRKELEQLRVALEKAEKELEAN 328 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHhh-hhhhhhhhcch--hHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344444455666666666655544444444444444431 11112222111 11222245677777888888877653
No 145
>PF08763 Ca_chan_IQ: Voltage gated calcium channel IQ domain; InterPro: IPR014873 Ca2+ ions are unique in that they not only carry charge but they are also the most widely used of diffusible second messengers. Voltage-dependent Ca2+ channels (VDCC) are a family of molecules that allow cells to couple electrical activity to intracellular Ca2+ signalling. The opening and closing of these channels by depolarizing stimuli, such as action potentials, allows Ca2+ ions to enter neurons down a steep electrochemical gradient, producing transient intracellular Ca2+ signals. Many of the processes that occur in neurons, including transmitter release, gene transcription and metabolism are controlled by Ca2+ influx occurring simultaneously at different cellular locales. The pore is formed by the alpha-1 subunit which incorporates the conduction pore, the voltage sensor and gating apparatus, and the known sites of channel regulation by second messengers, drugs, and toxins []. The activity of this pore is modulated by 4 tightly-coupled subunits: an intracellular beta subunit; a transmembrane gamma subunit; and a disulphide-linked complex of alpha-2 and delta subunits, which are proteolytically cleaved from the same gene product. Properties of the protein including gating voltage-dependence, G protein modulation and kinase susceptibility can be influenced by these subunits. Voltage-gated calcium channels are classified as T, L, N, P, Q and R, and are distinguished by their sensitivity to pharmacological blocks, single-channel conductance kinetics, and voltage-dependence. On the basis of their voltage activation properties, the voltage-gated calcium classes can be further divided into two broad groups: the low (T-type) and high (L, N, P, Q and R-type) threshold-activated channels. The voltage-gated calcium channel alpha 1 subunit contains an IQ domain, named for its isoleucine-glutamine (IQ) motif, which interacts with hydrophobic pockets of Ca2+/calmodulin []. The interaction regulates two self-regulatory calcium dependent feedback mechanisms, calcium dependent inactivation (CDI), and calcium-dependent facilitation (CDF). ; PDB: 3OXQ_F 2F3Z_B 3G43_E 2F3Y_B 2BE6_D 3DVM_B 3BXK_D 2VAY_B 3DVK_B 3BXL_B ....
Probab=41.10 E-value=29 Score=25.06 Aligned_cols=18 Identities=22% Similarity=0.288 Sum_probs=15.2
Q ss_pred HHHHHHHHHhhhHHHHHH
Q 003826 521 RAAVVIQRQIKSRVARQK 538 (793)
Q Consensus 521 ~AAi~IQ~~~R~~~~R~~ 538 (793)
-|+..||.+||.+..|+.
T Consensus 10 YAt~lI~dyfr~~K~rk~ 27 (35)
T PF08763_consen 10 YATLLIQDYFRQFKKRKE 27 (35)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 488999999999888765
No 146
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=40.32 E-value=1.4e+02 Score=29.43 Aligned_cols=24 Identities=17% Similarity=0.285 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 585 ASFLAELQRRVLKAEAALREKEEE 608 (793)
Q Consensus 585 ~~~l~~l~~r~~~~e~~l~~~e~e 608 (793)
...+..|+.++..++.++..++.+
T Consensus 78 d~ei~~L~~el~~l~~~~k~l~~e 101 (169)
T PF07106_consen 78 DAEIKELREELAELKKEVKSLEAE 101 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444443333333
No 147
>PRK04325 hypothetical protein; Provisional
Probab=40.29 E-value=1.9e+02 Score=24.64 Aligned_cols=37 Identities=16% Similarity=0.197 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 594 RVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKM 630 (793)
Q Consensus 594 r~~~~e~~l~~~e~e~~~L~~~L~~~e~~~~ele~k~ 630 (793)
|+.++|.++.=.++-+++|-+.+.+-.+++..++..+
T Consensus 10 Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql 46 (74)
T PRK04325 10 RITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQL 46 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444443333333333
No 148
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=40.21 E-value=2.9e+02 Score=26.04 Aligned_cols=30 Identities=20% Similarity=0.417 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 598 AEAALREKEEENDILHQRLQQYESRWSEYE 627 (793)
Q Consensus 598 ~e~~l~~~e~e~~~L~~~L~~~e~~~~ele 627 (793)
++..+..+..+....+..|...+..|.+-+
T Consensus 71 ~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk 100 (132)
T PF07926_consen 71 LQQEINELKAEAESAKAELEESEASWEEQK 100 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 333333333333333333333333333333
No 149
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=40.15 E-value=1.3e+02 Score=24.18 Aligned_cols=32 Identities=16% Similarity=0.389 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 591 LQRRVLKAEAALREKEEENDILHQRLQQYESR 622 (793)
Q Consensus 591 l~~r~~~~e~~l~~~e~e~~~L~~~L~~~e~~ 622 (793)
++.++.+++..+..++.+++++...++.+++.
T Consensus 5 lEn~~~~~~~~i~tvk~en~~i~~~ve~i~en 36 (55)
T PF05377_consen 5 LENELPRIESSINTVKKENEEISESVEKIEEN 36 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444555555555555544444433
No 150
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=40.02 E-value=3.7e+02 Score=27.18 Aligned_cols=18 Identities=11% Similarity=0.411 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 003826 614 QRLQQYESRWSEYEQKMK 631 (793)
Q Consensus 614 ~~L~~~e~~~~ele~k~~ 631 (793)
++++.++.+..+++..+.
T Consensus 110 ~~l~~l~~~~~~l~~el~ 127 (188)
T PF03962_consen 110 EELEELKKELKELKKELE 127 (188)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 151
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=39.94 E-value=1.1e+02 Score=27.99 Aligned_cols=22 Identities=14% Similarity=0.181 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 003826 596 LKAEAALREKEEENDILHQRLQ 617 (793)
Q Consensus 596 ~~~e~~l~~~e~e~~~L~~~L~ 617 (793)
..+++++.+++++|+.|+.++.
T Consensus 37 ~~~~~e~~~l~~~n~~L~~eI~ 58 (105)
T PRK00888 37 AAQQQTNAKLKARNDQLFAEID 58 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333434444444444433333
No 152
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=39.82 E-value=3.8e+02 Score=32.31 Aligned_cols=48 Identities=15% Similarity=0.226 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 590 ELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVW 637 (793)
Q Consensus 590 ~l~~r~~~~e~~l~~~e~e~~~L~~~L~~~e~~~~ele~k~~~~ee~~ 637 (793)
.++....+...++...++++..++.+++.++.+...++..+..+....
T Consensus 715 ~l~~~le~e~nr~~~~~~e~~~~qeE~~~l~~r~~~le~e~r~~k~~~ 762 (961)
T KOG4673|consen 715 QLSKSLEKERNRAAENRQEYLAAQEEADTLEGRANQLEVEIRELKRKH 762 (961)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444555566666666666666666666655555444443
No 153
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=39.71 E-value=1.6e+02 Score=24.54 Aligned_cols=42 Identities=7% Similarity=0.209 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 591 LQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKS 632 (793)
Q Consensus 591 l~~r~~~~e~~l~~~e~e~~~L~~~L~~~e~~~~ele~k~~~ 632 (793)
|+.++.-.+..+.++.+.+...++++..++.+...+..++.+
T Consensus 9 LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 50 (69)
T PF04102_consen 9 LEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRE 50 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444444444444444444444444433
No 154
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=39.43 E-value=6.8e+02 Score=29.20 Aligned_cols=10 Identities=20% Similarity=0.517 Sum_probs=6.6
Q ss_pred cceeeeecCC
Q 003826 720 AKFLVEVKSG 729 (793)
Q Consensus 720 ~~~~~e~~~~ 729 (793)
.++||-...|
T Consensus 241 PDviV~LP~~ 250 (475)
T PRK10361 241 PDVIVRLPQG 250 (475)
T ss_pred CeEEEECCCC
Confidence 6677776655
No 155
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=39.08 E-value=1.1e+02 Score=33.37 Aligned_cols=63 Identities=22% Similarity=0.264 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 003826 595 VLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSLSIAKKSLAI 657 (793)
Q Consensus 595 ~~~~e~~l~~~e~e~~~L~~~L~~~e~~~~ele~k~~~~ee~~qkq~~~lq~~L~a~~~sla~ 657 (793)
+..+..+++.+++||..|+.+-..+......+|++-..+....-+++.+...+++.....|+.
T Consensus 162 le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~ 224 (306)
T PF04849_consen 162 LEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELAR 224 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHH
Confidence 345567777888888888888888888777888776666665556666666666666665554
No 156
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=38.67 E-value=6.7e+02 Score=29.30 Aligned_cols=36 Identities=14% Similarity=0.201 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 583 VKASFLAELQRRVLKAEAALREKEEENDILHQRLQQ 618 (793)
Q Consensus 583 ~~~~~l~~l~~r~~~~e~~l~~~e~e~~~L~~~L~~ 618 (793)
.+.....+|...+..+..+++...-|++++.+-|+.
T Consensus 230 ~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~ 265 (596)
T KOG4360|consen 230 RQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQA 265 (596)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444444433
No 157
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=38.30 E-value=7.8e+02 Score=31.48 Aligned_cols=34 Identities=24% Similarity=0.281 Sum_probs=17.2
Q ss_pred CCHHHHHHHHHhHHHHHh----------HHHHhhHHHHHHHhhh
Q 003826 736 NPDKELRRLKQMFEAWKK----------DYGSRLRETKVILNKL 769 (793)
Q Consensus 736 ~~~~el~~lk~~f~~wkk----------~~~~rl~~~~~~~~~~ 769 (793)
+.+++.+.|+.=-+.=++ .+|..|-+++-.|++|
T Consensus 658 s~d~~ie~le~e~~~l~~~~~~l~~~~~~~e~~l~e~~~~~~~l 701 (1074)
T KOG0250|consen 658 SFDDEIEDLEREASRLQKEILELENQRREAEKNLEELEKKLREL 701 (1074)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555544443333 4455555555555555
No 158
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=38.24 E-value=2.7e+02 Score=24.30 Aligned_cols=31 Identities=29% Similarity=0.388 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 597 KAEAALREKEEENDILHQRLQQYESRWSEYE 627 (793)
Q Consensus 597 ~~e~~l~~~e~e~~~L~~~L~~~e~~~~ele 627 (793)
++.+++....++..+++.+|..++.+..|.|
T Consensus 5 Ki~~eieK~k~Kiae~Q~rlK~Le~qk~E~E 35 (83)
T PF14193_consen 5 KIRAEIEKTKEKIAELQARLKELEAQKTEAE 35 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444555555555555555555444
No 159
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=38.02 E-value=2.4e+02 Score=35.09 Aligned_cols=12 Identities=17% Similarity=-0.017 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHH
Q 003826 43 QESVFAMLAAVL 54 (793)
Q Consensus 43 ~~~if~ilaaIL 54 (793)
...|.++|.++-
T Consensus 87 l~~i~~~l~~~~ 98 (771)
T TIGR01069 87 ILVIQNALKTVK 98 (771)
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
No 160
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=37.75 E-value=2.2e+02 Score=30.42 Aligned_cols=73 Identities=18% Similarity=0.220 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 003826 581 VLVKASFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSLSIAKKSLAI 657 (793)
Q Consensus 581 ~~~~~~~l~~l~~r~~~~e~~l~~~e~e~~~L~~~L~~~e~~~~ele~k~~~~ee~~qkq~~~lq~~L~a~~~sla~ 657 (793)
|+.+...+.+-+.++.+-+.++.++...+..+++..=+.|=-+.|.+-.++.. .+++..|+.-++..+.+|+.
T Consensus 70 iRHLkakLkes~~~l~dRetEI~eLksQL~RMrEDWIEEECHRVEAQLALKEA----RkEIkQLkQvieTmrssL~e 142 (305)
T PF15290_consen 70 IRHLKAKLKESENRLHDRETEIDELKSQLARMREDWIEEECHRVEAQLALKEA----RKEIKQLKQVIETMRSSLAE 142 (305)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhhch
Confidence 44445555555556666666666666666666665543332222222222211 13334455555555555544
No 161
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=37.75 E-value=3.2e+02 Score=24.89 Aligned_cols=60 Identities=23% Similarity=0.289 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Q 003826 591 LQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSME---EVWQKQMRSLQSSLSI 650 (793)
Q Consensus 591 l~~r~~~~e~~l~~~e~e~~~L~~~L~~~e~~~~ele~k~~~~e---e~~qkq~~~lq~~L~a 650 (793)
|.....-++..+-+-...+..|.++|...+.....++..+.++. ..+.++++.||.++..
T Consensus 10 LraQ~~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~~ 72 (102)
T PF10205_consen 10 LRAQNQVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELEE 72 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444455555555555555554554444433 2344666777777764
No 162
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=37.58 E-value=2.8e+02 Score=34.53 Aligned_cols=47 Identities=17% Similarity=0.155 Sum_probs=22.9
Q ss_pred ccCCCccccCCcccHHHHHHHHHHHhhcC-CCHHHHHHHHHHHHHHHHhcC
Q 003826 9 LRQSSCYSINGVDDAEQFRIVVEALDIVH-VSKEDQESVFAMLAAVLWLGN 58 (793)
Q Consensus 9 L~~s~~~~~~~~dD~~~f~~~~~Al~~lg-~~~~~~~~if~ilaaILhLGN 58 (793)
+...+...+.++.|.... ..-+..=| +++.+...|.++|.++-.+-+
T Consensus 57 ~~~~~~~~l~~~~Di~~~---l~r~~~g~~l~~~eL~~i~~~l~~~~~l~~ 104 (782)
T PRK00409 57 LRLKGLPPFEGVKDIDDA---LKRAEKGGVLSGDELLEIAKTLRYFRQLKR 104 (782)
T ss_pred HHhcCCCCCCCCccHHHH---HHHHhCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 333334445555553332 33333212 556676666666666554443
No 163
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=37.16 E-value=2.4e+02 Score=30.92 Aligned_cols=11 Identities=27% Similarity=0.308 Sum_probs=6.5
Q ss_pred HHHhccCCeee
Q 003826 353 QRLESTTPHFI 363 (793)
Q Consensus 353 ~~L~~t~~hfI 363 (793)
+-|+-|+.||.
T Consensus 14 dFL~~t~I~Fm 24 (312)
T smart00787 14 DFLNMTGIRFM 24 (312)
T ss_pred HHHHHcCceee
Confidence 34566677763
No 164
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=36.93 E-value=3e+02 Score=24.33 Aligned_cols=43 Identities=21% Similarity=0.208 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 594 RVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEV 636 (793)
Q Consensus 594 r~~~~e~~l~~~e~e~~~L~~~L~~~e~~~~ele~k~~~~ee~ 636 (793)
++.+++++...+.+|++.|+.+...-+.+.+.++.+-+-.|..
T Consensus 24 k~~ka~~~~~kL~~en~qlk~Ek~~~~~qvkn~~vrqknee~~ 66 (87)
T PF10883_consen 24 KVKKAKKQNAKLQKENEQLKTEKAVAETQVKNAKVRQKNEENT 66 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhh
Confidence 4455566666777777777777777777777776666555543
No 165
>PRK02793 phi X174 lysis protein; Provisional
Probab=36.57 E-value=2.3e+02 Score=23.97 Aligned_cols=37 Identities=16% Similarity=0.151 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 593 RRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQK 629 (793)
Q Consensus 593 ~r~~~~e~~l~~~e~e~~~L~~~L~~~e~~~~ele~k 629 (793)
.|+.++|.++.=.++-+.+|-+.+.+-.+++..++..
T Consensus 8 ~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~ 44 (72)
T PRK02793 8 ARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDH 44 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444433333333333
No 166
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=36.42 E-value=2.4e+02 Score=25.80 Aligned_cols=28 Identities=25% Similarity=0.165 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 596 LKAEAALREKEEENDILHQRLQQYESRW 623 (793)
Q Consensus 596 ~~~e~~l~~~e~e~~~L~~~L~~~e~~~ 623 (793)
..++..+..+-+++.+|+..+..+..+.
T Consensus 11 ~~le~~l~~l~~~~~~LK~~~~~l~EEN 38 (107)
T PF06156_consen 11 DQLEQQLGQLLEELEELKKQLQELLEEN 38 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444433333
No 167
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=36.36 E-value=2.8e+02 Score=27.54 Aligned_cols=22 Identities=14% Similarity=0.448 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 003826 611 ILHQRLQQYESRWSEYEQKMKS 632 (793)
Q Consensus 611 ~L~~~L~~~e~~~~ele~k~~~ 632 (793)
+++++++.+.+....+++++++
T Consensus 120 emQe~i~~L~kev~~~~erl~~ 141 (201)
T KOG4603|consen 120 EMQEEIQELKKEVAGYRERLKN 141 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444445544444
No 168
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=36.25 E-value=3.5e+02 Score=31.97 Aligned_cols=31 Identities=19% Similarity=0.327 Sum_probs=14.4
Q ss_pred HHHHHHHHhHHHHHhHHHHhhHHHHHHHhhh
Q 003826 739 KELRRLKQMFEAWKKDYGSRLRETKVILNKL 769 (793)
Q Consensus 739 ~el~~lk~~f~~wkk~~~~rl~~~~~~~~~~ 769 (793)
.||.++-.+|+-=|+.=..=.++.+.++.+|
T Consensus 467 ~el~~~~~~~~~~k~e~eee~~k~~~E~e~l 497 (581)
T KOG0995|consen 467 LELKKAESKYELKKEEAEEEWKKCRKEIEKL 497 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555544444444444444444443
No 169
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=35.81 E-value=5.5e+02 Score=31.51 Aligned_cols=18 Identities=33% Similarity=0.508 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHhcccc
Q 003826 641 MRSLQSSLSIAKKSLAID 658 (793)
Q Consensus 641 ~~~lq~~L~a~~~sla~~ 658 (793)
...||.+|+..-..|..+
T Consensus 545 tR~LQ~Sma~lL~dls~D 562 (861)
T PF15254_consen 545 TRTLQNSMAKLLSDLSVD 562 (861)
T ss_pred HHHHHHHHHHHhhhcccc
Confidence 345555555555544443
No 170
>PRK02119 hypothetical protein; Provisional
Probab=35.42 E-value=2.8e+02 Score=23.54 Aligned_cols=13 Identities=15% Similarity=0.192 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHh
Q 003826 642 RSLQSSLSIAKKS 654 (793)
Q Consensus 642 ~~lq~~L~a~~~s 654 (793)
..|+.++......
T Consensus 40 d~L~~ql~~L~~r 52 (73)
T PRK02119 40 DKMQVQLRYMANK 52 (73)
T ss_pred HHHHHHHHHHHHH
Confidence 3334444443333
No 171
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=35.42 E-value=5.3e+02 Score=26.76 Aligned_cols=11 Identities=9% Similarity=0.168 Sum_probs=4.6
Q ss_pred HHHHHHHcCCC
Q 003826 432 SVAILHQFNIL 442 (793)
Q Consensus 432 ~~~il~~~~~~ 442 (793)
|..++-.+.+|
T Consensus 14 al~~iL~Lpip 24 (216)
T KOG1962|consen 14 ALFLILLLPIP 24 (216)
T ss_pred HHHHHHHcCCC
Confidence 33334444443
No 172
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=35.10 E-value=4.3e+02 Score=31.30 Aligned_cols=15 Identities=27% Similarity=0.195 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHhccc
Q 003826 643 SLQSSLSIAKKSLAI 657 (793)
Q Consensus 643 ~lq~~L~a~~~sla~ 657 (793)
.++.++...+..|..
T Consensus 280 ~~~~e~e~LkeqLr~ 294 (546)
T PF07888_consen 280 QLQQENEALKEQLRS 294 (546)
T ss_pred hHHHHHHHHHHHHHH
Confidence 344445555555544
No 173
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=34.86 E-value=2.8e+02 Score=29.28 Aligned_cols=14 Identities=29% Similarity=0.373 Sum_probs=6.5
Q ss_pred HHHhhHHHHHHHhh
Q 003826 755 YGSRLRETKVILNK 768 (793)
Q Consensus 755 ~~~rl~~~~~~~~~ 768 (793)
....|++-+..|.-
T Consensus 187 lq~QL~~L~~EL~~ 200 (246)
T PF00769_consen 187 LQEQLKELKSELEQ 200 (246)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH
Confidence 33445555555433
No 174
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=34.79 E-value=3e+02 Score=32.30 Aligned_cols=10 Identities=30% Similarity=0.348 Sum_probs=5.2
Q ss_pred hcccccccce
Q 003826 713 SQVFGDDAKF 722 (793)
Q Consensus 713 ~q~~~~~~~~ 722 (793)
.|+|..-+..
T Consensus 217 k~~fq~t~~~ 226 (907)
T KOG2264|consen 217 KQVFQETIPN 226 (907)
T ss_pred HHHHHHhccc
Confidence 4555555555
No 175
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=34.79 E-value=4.2e+02 Score=26.53 Aligned_cols=30 Identities=30% Similarity=0.306 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 598 AEAALREKEEENDILHQRLQQYESRWSEYE 627 (793)
Q Consensus 598 ~e~~l~~~e~e~~~L~~~L~~~e~~~~ele 627 (793)
++.....+.++.++|++.+........-|+
T Consensus 90 Le~~~~~l~~ri~eLe~~l~~kad~vvsYq 119 (175)
T PRK13182 90 LEAQLNTITRRLDELERQLQQKADDVVSYQ 119 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Confidence 344444444444444444444444444443
No 176
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=34.78 E-value=2.3e+02 Score=27.92 Aligned_cols=30 Identities=27% Similarity=0.254 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 590 ELQRRVLKAEAALREKEEENDILHQRLQQY 619 (793)
Q Consensus 590 ~l~~r~~~~e~~l~~~e~e~~~L~~~L~~~ 619 (793)
.++....++..++..++.|+..|.+++..+
T Consensus 108 ~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~ 137 (161)
T TIGR02894 108 RLKNQNESLQKRNEELEKELEKLRQRLSTI 137 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444433
No 177
>PRK00846 hypothetical protein; Provisional
Probab=34.56 E-value=2.9e+02 Score=23.82 Aligned_cols=36 Identities=17% Similarity=0.146 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 593 RRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQ 628 (793)
Q Consensus 593 ~r~~~~e~~l~~~e~e~~~L~~~L~~~e~~~~ele~ 628 (793)
.|+.++|.++.=.+.-+++|-+.+......+..+..
T Consensus 13 ~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ 48 (77)
T PRK00846 13 ARLVELETRLSFQEQALTELSEALADARLTGARNAE 48 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444443333333333
No 178
>PRK12704 phosphodiesterase; Provisional
Probab=34.53 E-value=5.4e+02 Score=30.40 Aligned_cols=8 Identities=25% Similarity=0.447 Sum_probs=3.1
Q ss_pred hhhHHHHH
Q 003826 703 SRLAEEFD 710 (793)
Q Consensus 703 ~~l~~e~~ 710 (793)
...-+||+
T Consensus 289 ~~~~~~~~ 296 (520)
T PRK12704 289 EKARKEVD 296 (520)
T ss_pred HHHHHHHH
Confidence 33334443
No 179
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=34.50 E-value=7.4e+02 Score=31.65 Aligned_cols=51 Identities=14% Similarity=0.282 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 591 LQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQM 641 (793)
Q Consensus 591 l~~r~~~~e~~l~~~e~e~~~L~~~L~~~e~~~~ele~k~~~~ee~~qkq~ 641 (793)
...++...+..+...+.....+...++.+++++.+++...+.++++.+...
T Consensus 301 ~k~rl~~~~k~i~~~kk~~~~~~~~ie~~ek~l~av~~~~~~fekei~~~~ 351 (1141)
T KOG0018|consen 301 LKKRLEEIEKDIETAKKDYRALKETIERLEKELKAVEGAKEEFEKEIEERS 351 (1141)
T ss_pred chhHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555666666777777777777777777777777777777776664433
No 180
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=34.13 E-value=9.8e+02 Score=29.52 Aligned_cols=24 Identities=25% Similarity=0.379 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 599 EAALREKEEENDILHQRLQQYESR 622 (793)
Q Consensus 599 e~~l~~~e~e~~~L~~~L~~~e~~ 622 (793)
.++...+..|+..|..+++++..+
T Consensus 436 nak~~ql~~eletLn~k~qqls~k 459 (1118)
T KOG1029|consen 436 NAKKKQLQQELETLNFKLQQLSGK 459 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Confidence 333333333333444444333333
No 181
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=34.07 E-value=4.6e+02 Score=27.40 Aligned_cols=13 Identities=38% Similarity=0.486 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHHH
Q 003826 594 RVLKAEAALREKE 606 (793)
Q Consensus 594 r~~~~e~~l~~~e 606 (793)
++..++..+..++
T Consensus 135 R~e~~E~ki~eLE 147 (237)
T PF00261_consen 135 RAEAAESKIKELE 147 (237)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHhhhchhHHHHH
Confidence 3333333333333
No 182
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=33.80 E-value=1.3e+03 Score=30.84 Aligned_cols=38 Identities=11% Similarity=0.052 Sum_probs=22.3
Q ss_pred hhhhHHHHHH-HHHHHHHHHhHHHHHHHHHHHhhhHHHH
Q 003826 499 ALQSFIRGEK-IRKEYALVLQRHRAAVVIQRQIKSRVAR 536 (793)
Q Consensus 499 ~IQs~~Rg~~-aRr~~~~l~~~~~AAi~IQ~~~R~~~~R 536 (793)
.++..++.+- .+.....+.....+...|...|+.|...
T Consensus 224 ~l~e~~~~~~~~~~~le~l~~~~~~l~~i~~~y~~y~~~ 262 (1353)
T TIGR02680 224 DVADALEQLDEYRDELERLEALERALRNFLQRYRRYART 262 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444432 2444455555667788888888877653
No 183
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=33.78 E-value=4e+02 Score=26.09 Aligned_cols=25 Identities=16% Similarity=0.315 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 619 YESRWSEYEQKMKSMEEVWQKQMRS 643 (793)
Q Consensus 619 ~e~~~~ele~k~~~~ee~~qkq~~~ 643 (793)
++.++.+|+...+...+.++.++..
T Consensus 56 Lk~~i~~lq~~~~~~~~~~e~~l~~ 80 (155)
T PF06810_consen 56 LKKQIEELQAKNKTAKEEYEAKLAQ 80 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444333
No 184
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=33.70 E-value=2.9e+02 Score=33.50 Aligned_cols=21 Identities=14% Similarity=0.325 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 003826 611 ILHQRLQQYESRWSEYEQKMK 631 (793)
Q Consensus 611 ~L~~~L~~~e~~~~ele~k~~ 631 (793)
.|+.++..++.+..+.+.++.
T Consensus 266 ~Le~ei~~le~e~~e~~~~l~ 286 (650)
T TIGR03185 266 QLERQLKEIEAARKANRAQLR 286 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 185
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=33.55 E-value=5.7e+02 Score=30.19 Aligned_cols=20 Identities=20% Similarity=0.388 Sum_probs=8.7
Q ss_pred hhhhhHHHHHhhhccccccc
Q 003826 701 VISRLAEEFDQRSQVFGDDA 720 (793)
Q Consensus 701 ~~~~l~~e~~~~~q~~~~~~ 720 (793)
+|..-.+||++.-.--+++|
T Consensus 281 ~~~~~~~~~~~~i~~~g~~~ 300 (514)
T TIGR03319 281 MVEKATKEVDNAIREEGEQA 300 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444455554444333333
No 186
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=33.47 E-value=3.4e+02 Score=34.47 Aligned_cols=63 Identities=25% Similarity=0.296 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 003826 594 RVLKAEAALREKEEENDILHQRLQQYESRWSEYE---QKMKSMEEVWQKQMRSLQSSLSIAKKSLA 656 (793)
Q Consensus 594 r~~~~e~~l~~~e~e~~~L~~~L~~~e~~~~ele---~k~~~~ee~~qkq~~~lq~~L~a~~~sla 656 (793)
+..+++..+.....+...++.++++.+....+-+ .++...+..+..+...++.+++.++..+.
T Consensus 484 ~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~~~e~ii~~~~~se~~l~~~a~~l~~~~~~s~~d~s 549 (1041)
T KOG0243|consen 484 EKEKLKSKLQNKNKELESLKEELQQAKATLKEEEEIISQQEKSEEKLVDRATKLRRSLEESQDDLS 549 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444433322 22223333344444555555555555443
No 187
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=33.36 E-value=3.3e+02 Score=31.89 Aligned_cols=60 Identities=25% Similarity=0.360 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 590 ELQRRVLKAEAALREKEEENDILHQRLQQYESRW----SEYEQKMKSMEEVWQKQMRSLQSSLSIAKK 653 (793)
Q Consensus 590 ~l~~r~~~~e~~l~~~e~e~~~L~~~L~~~e~~~----~ele~k~~~~ee~~qkq~~~lq~~L~a~~~ 653 (793)
.|..++..++++...+.+++..+.+.+..++.+. .-||..+..|-|.+ .+|.+.|+..+.
T Consensus 445 aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr~NYE~QLs~MSEHL----asmNeqL~~Q~e 508 (518)
T PF10212_consen 445 ALQKRLESAEKEKESLEEELKEANQNISRLQDELETTRRNYEEQLSMMSEHL----ASMNEQLAKQRE 508 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 3444444445555555555555554444444333 33444444444433 555555554443
No 188
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=33.31 E-value=3.6e+02 Score=33.21 Aligned_cols=19 Identities=21% Similarity=0.474 Sum_probs=13.6
Q ss_pred cCCeeeeecCCCCCCCCCc
Q 003826 358 TTPHFIRCIKPNNFQSPGL 376 (793)
Q Consensus 358 t~~hfIrCIkPN~~~~p~~ 376 (793)
|.++||.|-+|.....|..
T Consensus 423 ~~Ve~llcT~~~~~~~~~P 441 (717)
T PF10168_consen 423 CIVEYLLCTKPLSSSAPNP 441 (717)
T ss_pred cceEEEeccCCCCCCCCCC
Confidence 4468999999877665544
No 189
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=33.20 E-value=5.9e+02 Score=26.67 Aligned_cols=60 Identities=15% Similarity=0.175 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHh
Q 003826 595 VLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVW----------QKQMRSLQSSLSIAKKS 654 (793)
Q Consensus 595 ~~~~e~~l~~~e~e~~~L~~~L~~~e~~~~ele~k~~~~ee~~----------qkq~~~lq~~L~a~~~s 654 (793)
+.+.+.+...|..|-....++|.+....+..+|.-+++.+++. ..+...|..+....+++
T Consensus 34 L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 34 LEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444445444444444444444333332 22334445555566666
No 190
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=32.92 E-value=4.5e+02 Score=31.60 Aligned_cols=10 Identities=40% Similarity=0.830 Sum_probs=7.2
Q ss_pred ecCccccccc
Q 003826 272 HYAGEVIYDT 281 (793)
Q Consensus 272 HyaG~V~Y~~ 281 (793)
+|.|++-|+.
T Consensus 79 Gy~~digyq~ 88 (594)
T PF05667_consen 79 GYRGDIGYQT 88 (594)
T ss_pred CCCCCCcchh
Confidence 4778888863
No 191
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=32.92 E-value=3.4e+02 Score=33.80 Aligned_cols=7 Identities=29% Similarity=0.614 Sum_probs=3.6
Q ss_pred HHHHHHc
Q 003826 433 VAILHQF 439 (793)
Q Consensus 433 ~~il~~~ 439 (793)
.++|+.+
T Consensus 425 ~aiLe~l 431 (771)
T TIGR01069 425 ISILEYL 431 (771)
T ss_pred HHHHHHH
Confidence 3456554
No 192
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=32.82 E-value=2.2e+02 Score=25.13 Aligned_cols=38 Identities=21% Similarity=0.285 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 586 SFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRW 623 (793)
Q Consensus 586 ~~l~~l~~r~~~~e~~l~~~e~e~~~L~~~L~~~e~~~ 623 (793)
++=.+.+.++.+++.++..+.+|+..|+.++.....+.
T Consensus 42 sYe~rwek~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek 79 (87)
T PF12709_consen 42 SYEARWEKKVDELENENKALKRENEQLKKKLDTEREEK 79 (87)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445666666677777777777777766665544443
No 193
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=32.78 E-value=4.5e+02 Score=28.19 Aligned_cols=8 Identities=25% Similarity=0.634 Sum_probs=3.1
Q ss_pred CCCCccCh
Q 003826 401 GFPTRMSH 408 (793)
Q Consensus 401 Gyp~r~~~ 408 (793)
||-++.++
T Consensus 91 gY~Vk~S~ 98 (269)
T PF05278_consen 91 GYQVKPSQ 98 (269)
T ss_pred CEEEcHhH
Confidence 34443333
No 194
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=32.75 E-value=2.1e+02 Score=22.44 Aligned_cols=25 Identities=40% Similarity=0.500 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 596 LKAEAALREKEEENDILHQRLQQYE 620 (793)
Q Consensus 596 ~~~e~~l~~~e~e~~~L~~~L~~~e 620 (793)
..++..+..++.+|..|..++..++
T Consensus 28 ~~le~~~~~L~~en~~L~~~i~~L~ 52 (54)
T PF07716_consen 28 EELEQEVQELEEENEQLRQEIAQLE 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444445555555555555544443
No 195
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=32.70 E-value=3.2e+02 Score=34.04 Aligned_cols=11 Identities=27% Similarity=0.344 Sum_probs=4.7
Q ss_pred hChhHHHHHHh
Q 003826 389 CGVLEVVRISR 399 (793)
Q Consensus 389 ~gvle~vri~r 399 (793)
.|+.+.+.|.+
T Consensus 393 ~~m~~~~~Il~ 403 (782)
T PRK00409 393 GHMTNIVRILE 403 (782)
T ss_pred HHHHHHHHHHH
Confidence 34444444443
No 196
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=32.57 E-value=5.1e+02 Score=25.74 Aligned_cols=31 Identities=13% Similarity=0.260 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003826 624 SEYEQKMKSMEEVWQKQMRSLQSSLSIAKKS 654 (793)
Q Consensus 624 ~ele~k~~~~ee~~qkq~~~lq~~L~a~~~s 654 (793)
...+.++..+.......+..+..++++.+-.
T Consensus 123 ~~~~~ki~e~~~ki~~ei~~lr~~iE~~K~~ 153 (177)
T PF07798_consen 123 AKQELKIQELNNKIDTEIANLRTEIESLKWD 153 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444555555555555555666555543
No 197
>PRK00106 hypothetical protein; Provisional
Probab=32.50 E-value=4.9e+02 Score=30.88 Aligned_cols=28 Identities=21% Similarity=0.406 Sum_probs=14.5
Q ss_pred chhhhhHHHHHhhhcccccccceeeeecCC
Q 003826 700 SVISRLAEEFDQRSQVFGDDAKFLVEVKSG 729 (793)
Q Consensus 700 ~~~~~l~~e~~~~~q~~~~~~~~~~e~~~~ 729 (793)
.+|..-.+||++.-.--+++| +.|+..+
T Consensus 301 e~v~k~~~e~~~~i~~~Ge~a--~~~lg~~ 328 (535)
T PRK00106 301 ELVEKNRLEMDNRIREYGEAA--AYEIGAP 328 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHcCCC
Confidence 455666666666555444443 3344443
No 198
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=32.29 E-value=5.4e+02 Score=27.61 Aligned_cols=24 Identities=29% Similarity=0.410 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 607 EENDILHQRLQQYESRWSEYEQKM 630 (793)
Q Consensus 607 ~e~~~L~~~L~~~e~~~~ele~k~ 630 (793)
.|...+.++|.+.+++..+...++
T Consensus 207 ~ELe~~~EeL~~~Eke~~e~~~~i 230 (269)
T PF05278_consen 207 EELEELEEELKQKEKEVKEIKERI 230 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444444444433
No 199
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=31.98 E-value=74 Score=31.54 Aligned_cols=24 Identities=25% Similarity=0.367 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 595 VLKAEAALREKEEENDILHQRLQQ 618 (793)
Q Consensus 595 ~~~~e~~l~~~e~e~~~L~~~L~~ 618 (793)
+..+|.++.+..++|+-|+.+|++
T Consensus 2 LeD~EsklN~AIERnalLE~ELdE 25 (166)
T PF04880_consen 2 LEDFESKLNQAIERNALLESELDE 25 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHH
Confidence 345677777777777777777743
No 200
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=31.88 E-value=1.7e+02 Score=26.74 Aligned_cols=30 Identities=13% Similarity=0.216 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 597 KAEAALREKEEENDILHQRLQQYESRWSEY 626 (793)
Q Consensus 597 ~~e~~l~~~e~e~~~L~~~L~~~e~~~~el 626 (793)
++++++.++++++++++++.+.++.+...+
T Consensus 31 ~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L 60 (105)
T PRK00888 31 RVNDQVAAQQQTNAKLKARNDQLFAEIDDL 60 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444555555555555555555544444433
No 201
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=31.81 E-value=4.8e+02 Score=25.34 Aligned_cols=54 Identities=13% Similarity=0.158 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 594 RVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSS 647 (793)
Q Consensus 594 r~~~~e~~l~~~e~e~~~L~~~L~~~e~~~~ele~k~~~~ee~~qkq~~~lq~~ 647 (793)
+...++..+....+-++.|++++...+.....-...+.+++...+.....+...
T Consensus 28 ~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~ 81 (160)
T PF13094_consen 28 RKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEE 81 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444545555555555555555555555555555555555554443333333
No 202
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=31.55 E-value=2.1e+02 Score=23.03 Aligned_cols=35 Identities=11% Similarity=0.131 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 596 LKAEAALREKEEENDILHQRLQQYESRWSEYEQKM 630 (793)
Q Consensus 596 ~~~e~~l~~~e~e~~~L~~~L~~~e~~~~ele~k~ 630 (793)
.++|.++..++-.+.-++.+++++.....++++.+
T Consensus 3 ~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~env 37 (55)
T PF05377_consen 3 DELENELPRIESSINTVKKENEEISESVEKIEENV 37 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555544444444444444444444333
No 203
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=31.49 E-value=7.9e+02 Score=27.59 Aligned_cols=16 Identities=13% Similarity=0.219 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHhccc
Q 003826 642 RSLQSSLSIAKKSLAI 657 (793)
Q Consensus 642 ~~lq~~L~a~~~sla~ 657 (793)
..+..+|+..+..+..
T Consensus 304 ~~IseeLe~vK~emee 319 (359)
T PF10498_consen 304 AEISEELEQVKQEMEE 319 (359)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4555666666665543
No 204
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=31.44 E-value=1.2e+03 Score=29.89 Aligned_cols=16 Identities=19% Similarity=0.430 Sum_probs=9.7
Q ss_pred HHhhHHHHHHHhhhcC
Q 003826 756 GSRLRETKVILNKLGS 771 (793)
Q Consensus 756 ~~rl~~~~~~~~~~~~ 771 (793)
+-+++.+++++.-|.+
T Consensus 709 ~~~~~~~~~em~el~n 724 (1074)
T KOG0250|consen 709 KRRIRKKRAEMTELKN 724 (1074)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 3456666666666655
No 205
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=31.35 E-value=4.6e+02 Score=31.56 Aligned_cols=6 Identities=33% Similarity=1.182 Sum_probs=2.8
Q ss_pred HHHhhh
Q 003826 217 CLNLFE 222 (793)
Q Consensus 217 ~ldlie 222 (793)
||.+|.
T Consensus 41 cL~~I~ 46 (594)
T PF05667_consen 41 CLRVID 46 (594)
T ss_pred HHHHhC
Confidence 444444
No 206
>PF14282 FlxA: FlxA-like protein
Probab=30.98 E-value=1.9e+02 Score=26.35 Aligned_cols=12 Identities=25% Similarity=0.459 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q 003826 639 KQMRSLQSSLSI 650 (793)
Q Consensus 639 kq~~~lq~~L~a 650 (793)
.++..|+.+|..
T Consensus 58 ~QI~~LqaQI~q 69 (106)
T PF14282_consen 58 AQIQQLQAQIAQ 69 (106)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 207
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.83 E-value=2.7e+02 Score=29.42 Aligned_cols=54 Identities=9% Similarity=0.185 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 597 KAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSLSI 650 (793)
Q Consensus 597 ~~e~~l~~~e~e~~~L~~~L~~~e~~~~ele~k~~~~ee~~qkq~~~lq~~L~a 650 (793)
.+..++++++++...|+.+...+++....++....+....++.+.+.|.+...+
T Consensus 54 ~L~~e~~s~Q~~~~~L~~ev~~~~~~~~s~~~~~~t~~~~ie~~l~~l~~~aG~ 107 (247)
T COG3879 54 DLVKELRSLQKKVNTLAAEVEDLENKLDSVRRSVLTDDAALEDRLEKLRMLAGS 107 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHhcc
Confidence 445556666666666677777777777766644444555554455555544433
No 208
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=30.76 E-value=4.6e+02 Score=24.68 Aligned_cols=55 Identities=18% Similarity=0.226 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 003826 604 EKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSLSIAKKSLAID 658 (793)
Q Consensus 604 ~~e~e~~~L~~~L~~~e~~~~ele~k~~~~ee~~qkq~~~lq~~L~a~~~sla~~ 658 (793)
.+++++++.+.+|.+++.+..+.=+.-..+-..+.+.-..+...|+.....|..+
T Consensus 29 ~l~~eL~~~k~el~~yk~~V~~HF~~ta~Ll~~l~~~Y~~l~~Hla~~a~~Ll~~ 83 (128)
T PF06295_consen 29 KLEQELEQAKQELEQYKQEVNDHFAQTAELLDNLTQDYQKLYQHLAKGAEELLPD 83 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 4455556666677777766666555555555555566677888888888887654
No 209
>PF15272 BBP1_C: Spindle pole body component BBP1, C-terminal
Probab=30.39 E-value=6e+02 Score=25.92 Aligned_cols=59 Identities=25% Similarity=0.344 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 591 LQRRVLKAEAAL----REKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSLS 649 (793)
Q Consensus 591 l~~r~~~~e~~l----~~~e~e~~~L~~~L~~~e~~~~ele~k~~~~ee~~qkq~~~lq~~L~ 649 (793)
++.++..++..+ .++.++...+.+++-.++-+..+++.+.....-.-+.++.+|+.+|.
T Consensus 87 l~~~i~~le~~lvd~~~~kd~~i~~~~~~l~~~~~r~~el~~~r~~e~~~YesRI~dLE~~L~ 149 (196)
T PF15272_consen 87 LQSRISNLEKQLVDQMIEKDREIRTLQDELLSLELRNKELQNERERERIAYESRIADLERQLN 149 (196)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444 23455666666777666766677766665555555566666666665
No 210
>PF12004 DUF3498: Domain of unknown function (DUF3498); InterPro: IPR021887 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with PF00616 from PFAM, PF00168 from PFAM. This domain has two conserved sequence motifs: DLQ and PLSFQNP. ; PDB: 3BXJ_B.
Probab=30.36 E-value=17 Score=42.15 Aligned_cols=80 Identities=24% Similarity=0.322 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 003826 580 EVLVKASFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSLSIAKKSLAIDD 659 (793)
Q Consensus 580 ~~~~~~~~l~~l~~r~~~~e~~l~~~e~e~~~L~~~L~~~e~~~~ele~k~~~~ee~~qkq~~~lq~~L~a~~~sla~~~ 659 (793)
||..++.-+....+++++.|++|..-|+. +.+-|.+++.+..+-|++++...++...+|.++-.-|-+...+|..|-
T Consensus 377 EI~~LkErL~~S~rkLeEyErrLl~QEqq---t~Kll~qyq~RLedSE~RLr~QQ~eKd~qmksII~RL~~vEeELrre~ 453 (495)
T PF12004_consen 377 EIQSLKERLRMSHRKLEEYERRLLSQEQQ---TQKLLLQYQARLEDSEERLRRQQEEKDSQMKSIISRLMAVEEELRREH 453 (495)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHhhhhhHHHHHHHhhhhHHHHHHHHhhhhhhhhhhhhhH
Confidence 33333333334444444444444444433 223356666677777777777777777777777766666666666654
Q ss_pred ccc
Q 003826 660 SER 662 (793)
Q Consensus 660 ~~~ 662 (793)
...
T Consensus 454 ~~m 456 (495)
T PF12004_consen 454 AEM 456 (495)
T ss_dssp ---
T ss_pred HHH
Confidence 433
No 211
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=30.26 E-value=4.1e+02 Score=25.46 Aligned_cols=19 Identities=16% Similarity=0.247 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHhccc
Q 003826 639 KQMRSLQSSLSIAKKSLAI 657 (793)
Q Consensus 639 kq~~~lq~~L~a~~~sla~ 657 (793)
+.+..+...+..+-+..+.
T Consensus 109 ~~~~~i~~~i~~~v~~~a~ 127 (158)
T PF03938_consen 109 ELLQPIQKKINKAVEEYAK 127 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555544
No 212
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=29.92 E-value=1.3e+03 Score=30.50 Aligned_cols=56 Identities=16% Similarity=0.373 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH------HHHHHHHHHHHHHHHHHHhc
Q 003826 600 AALREKEEENDILHQRLQQYESRWSEYEQ-KMKSMEE------VWQKQMRSLQSSLSIAKKSL 655 (793)
Q Consensus 600 ~~l~~~e~e~~~L~~~L~~~e~~~~ele~-k~~~~ee------~~qkq~~~lq~~L~a~~~sl 655 (793)
.++..+..++..++.+|...+.+...|+. .+..+.. .|+.+...++..+.......
T Consensus 313 ~~~~~~~~~l~~~~~~L~~i~~~~~~ye~~~i~~~~~~~~~l~~~~~~~~~l~~~~~~Lt~~~ 375 (1201)
T PF12128_consen 313 KELSALNADLARIKSELDEIEQQKKDYEDADIEQLIARVDQLPEWRNELENLQEQLDLLTSKH 375 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555555555555555555553 2333333 34444444444444444443
No 213
>PRK02793 phi X174 lysis protein; Provisional
Probab=29.87 E-value=3.4e+02 Score=22.90 Aligned_cols=12 Identities=17% Similarity=0.335 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q 003826 642 RSLQSSLSIAKK 653 (793)
Q Consensus 642 ~~lq~~L~a~~~ 653 (793)
..|+.++.....
T Consensus 39 ~~L~~~l~~L~~ 50 (72)
T PRK02793 39 AKLRDHLRLLTE 50 (72)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 214
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=29.83 E-value=1.1e+03 Score=28.98 Aligned_cols=15 Identities=27% Similarity=0.446 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHHH
Q 003826 589 AELQRRVLKAEAALR 603 (793)
Q Consensus 589 ~~l~~r~~~~e~~l~ 603 (793)
..|+.++.+..+.+.
T Consensus 489 ~qlqarikE~q~kl~ 503 (1118)
T KOG1029|consen 489 DQLQARIKELQEKLQ 503 (1118)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 215
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=29.82 E-value=9.2e+02 Score=27.87 Aligned_cols=41 Identities=24% Similarity=0.264 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 003826 620 ESRWSEYEQKMKSMEEVWQKQMRSLQSSLSIAKKSLAIDDS 660 (793)
Q Consensus 620 e~~~~ele~k~~~~ee~~qkq~~~lq~~L~a~~~sla~~~~ 660 (793)
....-|+-..+.+-.+++++|+..|...|++...++.+-+.
T Consensus 429 ~~~myd~~~~l~~~q~~le~qI~~Le~kl~~l~~~l~s~~~ 469 (489)
T KOG3684|consen 429 QNDMYDLLQELHSRQEELEKQIDTLESKLEALTASLSSLPG 469 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCch
Confidence 33334444555555566666667777777777777765443
No 216
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=29.79 E-value=1.7e+02 Score=32.49 Aligned_cols=18 Identities=28% Similarity=0.523 Sum_probs=12.5
Q ss_pred ccccCCCCCccccccccC
Q 003826 663 NSDASVNASDEVEYSWDT 680 (793)
Q Consensus 663 ~~~~s~~~~~~~~~~~~~ 680 (793)
..+.|+..-|-+|++|+.
T Consensus 63 eyd~spaawdkd~fpws~ 80 (695)
T KOG0353|consen 63 EYDRSPAAWDKDDFPWSD 80 (695)
T ss_pred cccCCccccccCCCCCch
Confidence 345666667778888876
No 217
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=29.73 E-value=6.7e+02 Score=26.25 Aligned_cols=38 Identities=21% Similarity=0.362 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 600 AALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVW 637 (793)
Q Consensus 600 ~~l~~~e~e~~~L~~~L~~~e~~~~ele~k~~~~ee~~ 637 (793)
.+|+...+....|...+.+.+.+....+.....+.++.
T Consensus 53 eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey 90 (230)
T PF10146_consen 53 EELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEY 90 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444444444444444443
No 218
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=29.68 E-value=2.9e+02 Score=25.46 Aligned_cols=29 Identities=17% Similarity=0.058 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 595 VLKAEAALREKEEENDILHQRLQQYESRW 623 (793)
Q Consensus 595 ~~~~e~~l~~~e~e~~~L~~~L~~~e~~~ 623 (793)
+..++..+..+-+++.+|+..+..+..+.
T Consensus 10 l~~le~~l~~l~~el~~LK~~~~el~EEN 38 (110)
T PRK13169 10 LDDLEQNLGVLLKELGALKKQLAELLEEN 38 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444433333
No 219
>PF06409 NPIP: Nuclear pore complex interacting protein (NPIP); InterPro: IPR009443 This family consists of a series of primate specific nuclear pore complex interacting protein (NPIP) sequences. The function of this family is unknown but is well conserved from African apes to humans [].
Probab=29.60 E-value=6.5e+02 Score=26.30 Aligned_cols=46 Identities=20% Similarity=0.167 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 599 EAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSL 644 (793)
Q Consensus 599 e~~l~~~e~e~~~L~~~L~~~e~~~~ele~k~~~~ee~~qkq~~~l 644 (793)
|.+-.++|.++.+-.+....-.+++..|..+...|+|..++....-
T Consensus 133 e~E~~EKErqlSeAeEn~kl~mkei~tY~~~fQ~~Qel~~RaEdy~ 178 (265)
T PF06409_consen 133 ECEHAEKERQLSEAEENGKLAMKEIHTYKQMFQRMQELQQRAEDYY 178 (265)
T ss_pred HHHHHHHHhhhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444445556666666666766665554433
No 220
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=29.45 E-value=9.4e+02 Score=27.84 Aligned_cols=42 Identities=21% Similarity=0.269 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 607 EENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSL 648 (793)
Q Consensus 607 ~e~~~L~~~L~~~e~~~~ele~k~~~~ee~~qkq~~~lq~~L 648 (793)
.|-.+|.++|....-+..++...+.+-+-+.|....++.+.+
T Consensus 375 ~Ere~L~reL~~i~~~~~~L~k~V~~~~leaq~~~~slek~~ 416 (622)
T COG5185 375 QEREKLTRELDKINIQSDKLTKSVKSRKLEAQGIFKSLEKTL 416 (622)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 344455555555544445554444444444444444444433
No 221
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=29.41 E-value=4.2e+02 Score=33.51 Aligned_cols=23 Identities=17% Similarity=0.044 Sum_probs=14.7
Q ss_pred HHHHcCCCCc-----ceeecceeeeeee
Q 003826 435 ILHQFNILPE-----MYQVGYTKLFFRA 457 (793)
Q Consensus 435 il~~~~~~~~-----~~~vGkTkVFlr~ 457 (793)
.|.-+++++. .|.||.|-|+=..
T Consensus 604 al~Li~yd~~l~~amefvFG~tlVc~~~ 631 (1174)
T KOG0933|consen 604 ALSLIGYDDELKKAMEFVFGSTLVCDSL 631 (1174)
T ss_pred HHHHhcCCHHHHHHHHHHhCceEEecCH
Confidence 3444555542 6889998887643
No 222
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.31 E-value=3.4e+02 Score=22.76 Aligned_cols=18 Identities=11% Similarity=0.115 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 003826 605 KEEENDILHQRLQQYESR 622 (793)
Q Consensus 605 ~e~e~~~L~~~L~~~e~~ 622 (793)
+.-|+++|+++...+..+
T Consensus 23 LQmEieELKEknn~l~~e 40 (79)
T COG3074 23 LQMEIEELKEKNNSLSQE 40 (79)
T ss_pred HHHHHHHHHHHhhHhHHH
Confidence 333444444444333333
No 223
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=28.91 E-value=1.1e+03 Score=28.59 Aligned_cols=10 Identities=30% Similarity=0.767 Sum_probs=4.3
Q ss_pred HHHhHHHHHh
Q 003826 744 LKQMFEAWKK 753 (793)
Q Consensus 744 lk~~f~~wkk 753 (793)
|-++-.+|-|
T Consensus 653 l~~~~tawer 662 (961)
T KOG4673|consen 653 LSKAATAWER 662 (961)
T ss_pred HhhhhhHHHH
Confidence 3444444443
No 224
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=28.86 E-value=6.5e+02 Score=25.82 Aligned_cols=17 Identities=24% Similarity=0.268 Sum_probs=11.0
Q ss_pred CcchhhhhHHHHHhhhc
Q 003826 698 GLSVISRLAEEFDQRSQ 714 (793)
Q Consensus 698 ~~~~~~~l~~e~~~~~q 714 (793)
-..-|.+|..|+...+|
T Consensus 136 l~~e~erL~aeL~~er~ 152 (202)
T PF06818_consen 136 LRREVERLRAELQRERQ 152 (202)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34456777777776666
No 225
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=28.82 E-value=5e+02 Score=24.46 Aligned_cols=51 Identities=20% Similarity=0.343 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 603 REKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSLSIAKK 653 (793)
Q Consensus 603 ~~~e~e~~~L~~~L~~~e~~~~ele~k~~~~ee~~qkq~~~lq~~L~a~~~ 653 (793)
..+.++...++.++..++.........+...+..|..+-..|+.++..+..
T Consensus 62 ~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~ 112 (132)
T PF07926_consen 62 QQLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQ 112 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444555555444455544444443
No 226
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=28.39 E-value=6.3e+02 Score=25.45 Aligned_cols=47 Identities=17% Similarity=0.485 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 598 AEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSL 644 (793)
Q Consensus 598 ~e~~l~~~e~e~~~L~~~L~~~e~~~~ele~k~~~~ee~~qkq~~~l 644 (793)
+...+......|..|..+++.+...|..+...+..-+..|+.....+
T Consensus 86 LReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~ke~~~~~ee~~~ 132 (182)
T PF15035_consen 86 LREQLEQARKANEALQEDLQKLTQDWERLRDELEQKEAEWREEEENF 132 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445556667777777777777777766666666666665444333
No 227
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=28.21 E-value=5.7e+02 Score=24.96 Aligned_cols=38 Identities=11% Similarity=0.330 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q 003826 587 FLAELQRRVLKAEAALREKEE---ENDILHQRLQQYESRWS 624 (793)
Q Consensus 587 ~l~~l~~r~~~~e~~l~~~e~---e~~~L~~~L~~~e~~~~ 624 (793)
.+..++.++..+...+..+.. .+++|+.+++.++....
T Consensus 28 e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~ 68 (155)
T PF06810_consen 28 ERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNK 68 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 444444455555555555544 56666666666666655
No 228
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=28.17 E-value=87 Score=23.97 Aligned_cols=27 Identities=22% Similarity=0.208 Sum_probs=19.1
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 003826 26 FRIVVEALDIVHVSKEDQESVFAMLAAVLW 55 (793)
Q Consensus 26 f~~~~~Al~~lg~~~~~~~~if~ilaaILh 55 (793)
..++..||..|||++.++. +++..|+-
T Consensus 3 ~~d~~~AL~~LGy~~~e~~---~av~~~~~ 29 (47)
T PF07499_consen 3 LEDALEALISLGYSKAEAQ---KAVSKLLE 29 (47)
T ss_dssp HHHHHHHHHHTTS-HHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHH---HHHHHhhc
Confidence 5678999999999998854 44555543
No 229
>PRK00106 hypothetical protein; Provisional
Probab=28.07 E-value=8.5e+02 Score=28.93 Aligned_cols=23 Identities=13% Similarity=0.260 Sum_probs=13.4
Q ss_pred hhhhHHHHHhhhcc---cccccceee
Q 003826 702 ISRLAEEFDQRSQV---FGDDAKFLV 724 (793)
Q Consensus 702 ~~~l~~e~~~~~q~---~~~~~~~~~ 724 (793)
-++.-+-||+-+-| +||+..++|
T Consensus 244 eGrNir~~E~~tGvdliiddtp~~v~ 269 (535)
T PRK00106 244 EGRNIRTLESLTGIDVIIDDTPEVVV 269 (535)
T ss_pred CcchHHHHHHHhCceEEEcCCCCeEE
Confidence 35666777777753 455554444
No 230
>KOG3990 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.05 E-value=3.3e+02 Score=28.70 Aligned_cols=70 Identities=17% Similarity=0.178 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003826 581 VLVKASFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSLSIAKKS 654 (793)
Q Consensus 581 ~~~~~~~l~~l~~r~~~~e~~l~~~e~e~~~L~~~L~~~e~~~~ele~k~~~~ee~~qkq~~~lq~~L~a~~~s 654 (793)
+..+...++.|+..+.+-...+-++...+.+|+-. ++...++|.+.+.-.+.+++..++.-.+++..+.|
T Consensus 227 i~~lkeeia~Lkk~L~qkdq~ileKdkqisnLKad----~e~~~~~ek~Hke~v~qL~~k~~~~lk~~a~l~~s 296 (305)
T KOG3990|consen 227 IQKLKEEIARLKKLLHQKDQLILEKDKQISNLKAD----KEYQKELEKKHKERVQQLQKKKEESLKAIAQLRNS 296 (305)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHhhhhhhhccCcc----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33344444444444444444444444444444333 11124455555555555555555555555555443
No 231
>PHA02562 46 endonuclease subunit; Provisional
Probab=27.74 E-value=3.6e+02 Score=31.77 Aligned_cols=21 Identities=29% Similarity=0.186 Sum_probs=13.6
Q ss_pred CccCCCCcchhhhhHHHHHhh
Q 003826 692 VRPMSAGLSVISRLAEEFDQR 712 (793)
Q Consensus 692 ~~~~~~~~~~~~~l~~e~~~~ 712 (793)
...+++|...--.||.-|-.|
T Consensus 466 ~~~lS~Ge~~r~~la~~l~~~ 486 (562)
T PHA02562 466 YASFSQGEKARIDLALLFTWR 486 (562)
T ss_pred hhhcChhHHHHHHHHHHHHHH
Confidence 356677776666777766544
No 232
>PF14818 DUF4482: Domain of unknown function (DUF4482)
Probab=27.39 E-value=1.2e+02 Score=29.14 Aligned_cols=44 Identities=23% Similarity=0.491 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 003826 612 LHQRLQQYESRW----SEYEQKMKSMEEVWQKQMRSLQSSLSIAKKSL 655 (793)
Q Consensus 612 L~~~L~~~e~~~----~ele~k~~~~ee~~qkq~~~lq~~L~a~~~sl 655 (793)
|+.+|+..|+.| .||=.+...+..+|..|+..||..++.+.+..
T Consensus 3 L~~ql~~~EknW~rEk~ELLdrfd~ER~eWE~Q~kemq~kieql~~e~ 50 (141)
T PF14818_consen 3 LRWQLQHSEKNWSREKMELLDRFDRERQEWEQQWKEMQRKIEQLQKEV 50 (141)
T ss_pred HhHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344444444433 44445555555556666666666655555544
No 233
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=27.32 E-value=2.1e+02 Score=31.77 Aligned_cols=10 Identities=20% Similarity=0.225 Sum_probs=4.9
Q ss_pred HHHHHHHHhh
Q 003826 522 AAVVIQRQIK 531 (793)
Q Consensus 522 AAi~IQ~~~R 531 (793)
||--+..|++
T Consensus 195 Aa~~Lc~WV~ 204 (344)
T PF12777_consen 195 AAGSLCKWVR 204 (344)
T ss_dssp THHHHHHHHH
T ss_pred cchHHHHHHH
Confidence 4455555543
No 234
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=27.10 E-value=6.8e+02 Score=25.45 Aligned_cols=26 Identities=27% Similarity=0.261 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 605 KEEENDILHQRLQQYESRWSEYEQKM 630 (793)
Q Consensus 605 ~e~e~~~L~~~L~~~e~~~~ele~k~ 630 (793)
+++++..|..+..+++++...+.++|
T Consensus 79 lEE~~~~L~aq~rqlEkE~q~L~~~i 104 (193)
T PF14662_consen 79 LEEENRSLLAQARQLEKEQQSLVAEI 104 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 235
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=26.94 E-value=3.3e+02 Score=23.91 Aligned_cols=56 Identities=25% Similarity=0.371 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 580 EVLVKASFLAELQRRVLKAEAALREKE---EENDILHQRLQQYESRWSEYEQKMKSMEE 635 (793)
Q Consensus 580 ~~~~~~~~l~~l~~r~~~~e~~l~~~e---~e~~~L~~~L~~~e~~~~ele~k~~~~ee 635 (793)
+|......+.....++...+.++...+ +.-..|..++..+......+|.+++.+-.
T Consensus 6 eId~lEekl~~cr~~le~ve~rL~~~eLs~e~R~~lE~E~~~l~~~l~~~E~eL~~Lrk 64 (85)
T PF15188_consen 6 EIDGLEEKLAQCRRRLEAVESRLRRRELSPEARRSLEKELNELKEKLENNEKELKLLRK 64 (85)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 344455556666666666666654321 22233334444444444444444444443
No 236
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=26.89 E-value=1.2e+03 Score=29.64 Aligned_cols=17 Identities=29% Similarity=0.464 Sum_probs=11.2
Q ss_pred CHHHHHHHHHhHHHHHh
Q 003826 737 PDKELRRLKQMFEAWKK 753 (793)
Q Consensus 737 ~~~el~~lk~~f~~wkk 753 (793)
-.++|.+|..+|++-.|
T Consensus 963 are~l~~Lq~k~~~l~k 979 (1174)
T KOG0933|consen 963 AREELKKLQEKKEKLEK 979 (1174)
T ss_pred HHHHHHHhhHHHHHHHh
Confidence 35677777777776544
No 237
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=26.76 E-value=5e+02 Score=23.87 Aligned_cols=54 Identities=20% Similarity=0.234 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 003826 602 LREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSLSIAKKSL 655 (793)
Q Consensus 602 l~~~e~e~~~L~~~L~~~e~~~~ele~k~~~~ee~~qkq~~~lq~~L~a~~~sl 655 (793)
+..+..++.++++.+.+.|.+-..-...|-.--.++.+....++.++...+...
T Consensus 10 ~~~l~~~v~~lRed~r~SEdrsa~SRa~mhrRlDElV~Rv~~lEs~~~~lk~dV 63 (112)
T PF07439_consen 10 LGTLNAEVKELREDIRRSEDRSAASRASMHRRLDELVERVTTLESSVSTLKADV 63 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHhhH
Confidence 344444455555555555554444444444433444444455554444444443
No 238
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=26.71 E-value=57 Score=36.83 Aligned_cols=19 Identities=26% Similarity=0.440 Sum_probs=12.1
Q ss_pred chhhHhhhhhhcccccchh
Q 003826 471 LHGILRVQSCFRGHQARLC 489 (793)
Q Consensus 471 l~aa~~IQ~~~Rg~~~R~~ 489 (793)
++||+.||+|+|+|.+|..
T Consensus 17 ikaAilIQkWYRr~~ARle 35 (631)
T KOG0377|consen 17 IKAAILIQKWYRRYEARLE 35 (631)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5566666666666666644
No 239
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=26.64 E-value=4e+02 Score=22.62 Aligned_cols=21 Identities=19% Similarity=0.346 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 003826 609 NDILHQRLQQYESRWSEYEQK 629 (793)
Q Consensus 609 ~~~L~~~L~~~e~~~~ele~k 629 (793)
+..|+..+...+....++..+
T Consensus 35 IKKLr~~~~e~e~~~~~l~~~ 55 (74)
T PF12329_consen 35 IKKLRAKIKELEKQIKELKKK 55 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 240
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=26.57 E-value=4.3e+02 Score=26.26 Aligned_cols=17 Identities=18% Similarity=0.380 Sum_probs=7.5
Q ss_pred HHHHHhhhcccccccce
Q 003826 706 AEEFDQRSQVFGDDAKF 722 (793)
Q Consensus 706 ~~e~~~~~q~~~~~~~~ 722 (793)
.+|...|+..|.+=.+.
T Consensus 165 ~~~wrk~krmf~ei~d~ 181 (201)
T KOG4603|consen 165 CKEWRKRKRMFREIIDK 181 (201)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444443333
No 241
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=26.56 E-value=1.7e+02 Score=31.57 Aligned_cols=24 Identities=25% Similarity=0.219 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 601 ALREKEEENDILHQRLQQYESRWS 624 (793)
Q Consensus 601 ~l~~~e~e~~~L~~~L~~~e~~~~ 624 (793)
.+.++.+||++|++++.++..+..
T Consensus 67 ~~~~l~~EN~~Lr~e~~~l~~~~~ 90 (283)
T TIGR00219 67 DVNNLEYENYKLRQELLKKNQQLE 90 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666777777777766644433
No 242
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=26.51 E-value=6.9e+02 Score=25.36 Aligned_cols=12 Identities=25% Similarity=0.218 Sum_probs=6.2
Q ss_pred hHHHHHHHHHHH
Q 003826 502 SFIRGEKIRKEY 513 (793)
Q Consensus 502 s~~Rg~~aRr~~ 513 (793)
+++=||+.++..
T Consensus 13 G~~~G~~~~~~~ 24 (201)
T PF12072_consen 13 GIGIGYLVRKKI 24 (201)
T ss_pred HHHHHHHHHHHH
Confidence 444566655443
No 243
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=26.50 E-value=4.7e+02 Score=23.43 Aligned_cols=29 Identities=21% Similarity=0.388 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 609 NDILHQRLQQYESRWSEYEQKMKSMEEVW 637 (793)
Q Consensus 609 ~~~L~~~L~~~e~~~~ele~k~~~~ee~~ 637 (793)
..+|..+...+..+..+++..+...++++
T Consensus 69 ~~~l~~e~~~lk~~i~~le~~~~~~e~~l 97 (108)
T PF02403_consen 69 AEELKAEVKELKEEIKELEEQLKELEEEL 97 (108)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444
No 244
>PF07195 FliD_C: Flagellar hook-associated protein 2 C-terminus; InterPro: IPR010809 The flagellar hook-associated protein 2 (HAP2 or FliD) forms the distal end of the flagella, and plays a role in mucin specific adhesion of the bacteria []. This alignment covers the C-terminal region of the flagellar hook-associated protein 2.; GO: 0007155 cell adhesion, 0009288 bacterial-type flagellum
Probab=26.00 E-value=1.9e+02 Score=30.28 Aligned_cols=44 Identities=23% Similarity=0.388 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 608 ENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSLSIA 651 (793)
Q Consensus 608 e~~~L~~~L~~~e~~~~ele~k~~~~ee~~qkq~~~lq~~L~a~ 651 (793)
+...|..++..++.++..++.++...++.+.+|...|+..|...
T Consensus 194 ~~~~l~~~~~~~~~~i~~~~~rl~~~~~~l~~qf~~me~~i~~l 237 (239)
T PF07195_consen 194 RIDSLNSQIKSLDKQIEDLEERLESKEERLRKQFSAMESLISQL 237 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34456666677777777777777777777777777777666543
No 245
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=25.87 E-value=2e+02 Score=31.31 Aligned_cols=40 Identities=10% Similarity=0.139 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
Q 003826 597 KAEAALREKEEENDILHQRLQQYESRWSE--YEQKMKSMEEV 636 (793)
Q Consensus 597 ~~e~~l~~~e~e~~~L~~~L~~~e~~~~e--le~k~~~~ee~ 636 (793)
.++.+-..+.+||.+|+.+++++|.++.. ..++++-+++.
T Consensus 36 aLr~EN~~LKkEN~~Lk~eVerLE~e~l~s~V~E~vet~dv~ 77 (420)
T PF07407_consen 36 ALRMENHSLKKENNDLKIEVERLENEMLRSHVCEDVETNDVI 77 (420)
T ss_pred hHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHH
Confidence 44455556666777777777777666643 55666655443
No 246
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=25.78 E-value=1.1e+03 Score=27.66 Aligned_cols=12 Identities=8% Similarity=0.133 Sum_probs=7.6
Q ss_pred hhhHHHHHhhhc
Q 003826 703 SRLAEEFDQRSQ 714 (793)
Q Consensus 703 ~~l~~e~~~~~q 714 (793)
++.-+-||+-+-
T Consensus 224 Grnir~~e~~tg 235 (514)
T TIGR03319 224 GRNIRALETLTG 235 (514)
T ss_pred cchHHHHHHHhC
Confidence 555666776665
No 247
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=25.72 E-value=5.7e+02 Score=27.41 Aligned_cols=13 Identities=31% Similarity=0.695 Sum_probs=9.0
Q ss_pred cCCCCccChHHHH
Q 003826 400 SGFPTRMSHQKFA 412 (793)
Q Consensus 400 ~Gyp~r~~~~~F~ 412 (793)
-|||--++...|-
T Consensus 3 LGypr~iSmenFr 15 (267)
T PF10234_consen 3 LGYPRLISMENFR 15 (267)
T ss_pred CCCCCCCcHHHcC
Confidence 4788777776664
No 248
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=25.58 E-value=3.1e+02 Score=29.97 Aligned_cols=23 Identities=9% Similarity=0.239 Sum_probs=11.5
Q ss_pred CcchhhhhHHHHHhh-hccccccc
Q 003826 698 GLSVISRLAEEFDQR-SQVFGDDA 720 (793)
Q Consensus 698 ~~~~~~~l~~e~~~~-~q~~~~~~ 720 (793)
|++++|--+.+..+- +|-+++|+
T Consensus 188 ~fN~~Nv~~q~~~dvt~~KY~hni 211 (420)
T PF07407_consen 188 GFNYENVTAQNLRDVTGRKYNHNI 211 (420)
T ss_pred CcccccchHHHHHHHhhhhccccc
Confidence 445455555554432 34466666
No 249
>PRK00295 hypothetical protein; Provisional
Probab=25.52 E-value=4e+02 Score=22.23 Aligned_cols=33 Identities=9% Similarity=0.124 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 590 ELQRRVLKAEAALREKEEENDILHQRLQQYESR 622 (793)
Q Consensus 590 ~l~~r~~~~e~~l~~~e~e~~~L~~~L~~~e~~ 622 (793)
+|+.++.-.+..+.++.+.+...++++..++.+
T Consensus 9 ~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~q 41 (68)
T PRK00295 9 ELESRQAFQDDTIQALNDVLVEQQRVIERLQLQ 41 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444433
No 250
>PHA02562 46 endonuclease subunit; Provisional
Probab=25.51 E-value=4.1e+02 Score=31.33 Aligned_cols=45 Identities=13% Similarity=0.104 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 592 QRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEV 636 (793)
Q Consensus 592 ~~r~~~~e~~l~~~e~e~~~L~~~L~~~e~~~~ele~k~~~~ee~ 636 (793)
..+...++.++.+++.+..++..+|..++.++.++......++.+
T Consensus 357 ~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~ke 401 (562)
T PHA02562 357 VDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKE 401 (562)
T ss_pred HHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444444444444444333
No 251
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=25.42 E-value=3.9e+02 Score=31.40 Aligned_cols=14 Identities=29% Similarity=0.314 Sum_probs=5.9
Q ss_pred CcchhhhhHHHHHh
Q 003826 698 GLSVISRLAEEFDQ 711 (793)
Q Consensus 698 ~~~~~~~l~~e~~~ 711 (793)
|.+...-|-.-|++
T Consensus 209 G~~~d~~lk~~fq~ 222 (907)
T KOG2264|consen 209 GQSEDEWLKQVFQE 222 (907)
T ss_pred ccchHHHHHHHHHH
Confidence 33333444445544
No 252
>PRK00736 hypothetical protein; Provisional
Probab=25.38 E-value=4e+02 Score=22.22 Aligned_cols=29 Identities=24% Similarity=0.312 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 590 ELQRRVLKAEAALREKEEENDILHQRLQQ 618 (793)
Q Consensus 590 ~l~~r~~~~e~~l~~~e~e~~~L~~~L~~ 618 (793)
+|+.++.-.+..+.++.+.+...++++..
T Consensus 9 ~LE~klafqe~tie~Ln~~v~~Qq~~i~~ 37 (68)
T PRK00736 9 ELEIRVAEQEKTIEELSDQLAEQWKTVEQ 37 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444433
No 253
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=25.36 E-value=1.8e+03 Score=29.65 Aligned_cols=29 Identities=7% Similarity=0.042 Sum_probs=20.5
Q ss_pred CHHHHHHHHHhHHHHHhHHHHhhHHHHHH
Q 003826 737 PDKELRRLKQMFEAWKKDYGSRLRETKVI 765 (793)
Q Consensus 737 ~~~el~~lk~~f~~wkk~~~~rl~~~~~~ 765 (793)
-..+++.+...-+.|++....+.+...+.
T Consensus 457 ~~~~~~~~~~el~~~~~~~~e~~~~~~~~ 485 (1353)
T TIGR02680 457 THAAARARRDELDEEAEQAAARAELADEA 485 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777788888888888777664433
No 254
>PRK04406 hypothetical protein; Provisional
Probab=25.29 E-value=4.3e+02 Score=22.55 Aligned_cols=12 Identities=8% Similarity=0.158 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHH
Q 003826 642 RSLQSSLSIAKK 653 (793)
Q Consensus 642 ~~lq~~L~a~~~ 653 (793)
..|+.++.....
T Consensus 42 ~~L~~ql~~L~~ 53 (75)
T PRK04406 42 TKMQDQMKYVVG 53 (75)
T ss_pred HHHHHHHHHHHH
Confidence 344444444433
No 255
>PF03978 Borrelia_REV: Borrelia burgdorferi REV protein; InterPro: IPR007126 This family consists of several REV proteins from Borrelia burgdorferi (Lyme disease spirochete) and Borrelia garinii. The function of REV is unknown although it has been shown that the gene is induced during the ingesting of host blood suggesting a role in the metabolic activation of borreliae to adapt to physiological stimuli [].
Probab=25.24 E-value=4.6e+02 Score=25.64 Aligned_cols=54 Identities=17% Similarity=0.317 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 003826 602 LREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSLSIAKKSLAI 657 (793)
Q Consensus 602 l~~~e~e~~~L~~~L~~~e~~~~ele~k~~~~ee~~qkq~~~lq~~L~a~~~sla~ 657 (793)
...-.+++.+|++.+...- ..||++++..+++.++..++.--..|.+++.....
T Consensus 49 yknyk~ki~eLke~lK~~~--NAEleekll~lq~lfq~Kl~aKL~aLKAak~~i~~ 102 (160)
T PF03978_consen 49 YKNYKKKINELKEDLKDVS--NAELEEKLLKLQKLFQDKLEAKLAALKAAKQKIEG 102 (160)
T ss_pred HHHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3445566677777776543 33888888888888887777766677776665543
No 256
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=25.19 E-value=6.1e+02 Score=25.84 Aligned_cols=68 Identities=29% Similarity=0.310 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Q 003826 585 ASFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQ---KQMRSLQSSLSIAK 652 (793)
Q Consensus 585 ~~~l~~l~~r~~~~e~~l~~~e~e~~~L~~~L~~~e~~~~ele~k~~~~ee~~q---kq~~~lq~~L~a~~ 652 (793)
...+..+.+++.-++.++...++....++++|...++...+-+.-++.++...+ ..|..+..+|..++
T Consensus 3 e~~va~lnrri~~leeele~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~~e~qLkEAk 73 (205)
T KOG1003|consen 3 EADVAALNRRIQLLEEELDRAQERLATALQKLEEAEQAADESERGMKVIENRAQKLEEKMEAQEAQLKEAK 73 (205)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
No 257
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=24.90 E-value=8.4e+02 Score=25.78 Aligned_cols=13 Identities=31% Similarity=0.496 Sum_probs=5.7
Q ss_pred cCCCCcchhhhhH
Q 003826 694 PMSAGLSVISRLA 706 (793)
Q Consensus 694 ~~~~~~~~~~~l~ 706 (793)
.++++++.|.||.
T Consensus 196 ~isaALgyvahlv 208 (302)
T PF10186_consen 196 EISAALGYVAHLV 208 (302)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444443
No 258
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=24.89 E-value=6.7e+02 Score=30.95 Aligned_cols=13 Identities=15% Similarity=0.097 Sum_probs=5.2
Q ss_pred HHHHhhHHHHHHH
Q 003826 754 DYGSRLRETKVIL 766 (793)
Q Consensus 754 ~~~~rl~~~~~~~ 766 (793)
++..|.|+++-+|
T Consensus 288 qkeelVk~~qeeL 300 (1265)
T KOG0976|consen 288 QKEELVKELQEEL 300 (1265)
T ss_pred HHHHHHHHHHHHH
Confidence 3334444444433
No 259
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=24.67 E-value=1.1e+03 Score=30.16 Aligned_cols=31 Identities=16% Similarity=0.231 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 588 LAELQRRVLKAEAALREKEEENDILHQRLQQ 618 (793)
Q Consensus 588 l~~l~~r~~~~e~~l~~~e~e~~~L~~~L~~ 618 (793)
+..++..+..-..++..+++++++++..|..
T Consensus 485 ~~~~k~~L~~~~~el~~~~ee~~~~~~~l~~ 515 (1041)
T KOG0243|consen 485 KEKLKSKLQNKNKELESLKEELQQAKATLKE 515 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444433
No 260
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=24.64 E-value=9.5e+02 Score=26.28 Aligned_cols=15 Identities=27% Similarity=0.339 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHhc
Q 003826 641 MRSLQSSLSIAKKSL 655 (793)
Q Consensus 641 ~~~lq~~L~a~~~sl 655 (793)
...|+.+++.++..|
T Consensus 149 ~d~L~~e~~~Lre~L 163 (302)
T PF09738_consen 149 HDSLREELDELREQL 163 (302)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444454444444
No 261
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=24.62 E-value=7e+02 Score=27.63 Aligned_cols=37 Identities=16% Similarity=0.153 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 586 SFLAELQRRVLKAEAALREKEEENDILHQRLQQYESR 622 (793)
Q Consensus 586 ~~l~~l~~r~~~~e~~l~~~e~e~~~L~~~L~~~e~~ 622 (793)
...+.++++..++..-..+++.+.+.|++++..+.+.
T Consensus 232 aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~n 268 (365)
T KOG2391|consen 232 AEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKN 268 (365)
T ss_pred HHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhh
Confidence 3334444443333333333444444444444433333
No 262
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=24.57 E-value=1.6e+03 Score=28.91 Aligned_cols=9 Identities=33% Similarity=0.623 Sum_probs=3.3
Q ss_pred HHHHhHHHH
Q 003826 743 RLKQMFEAW 751 (793)
Q Consensus 743 ~lk~~f~~w 751 (793)
.|..+.+.|
T Consensus 678 ~l~~~l~~l 686 (1164)
T TIGR02169 678 RLRERLEGL 686 (1164)
T ss_pred HHHHHHHHH
Confidence 333333333
No 263
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=24.28 E-value=2.6e+02 Score=25.61 Aligned_cols=42 Identities=21% Similarity=0.139 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 584 KASFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSE 625 (793)
Q Consensus 584 ~~~~l~~l~~r~~~~e~~l~~~e~e~~~L~~~L~~~e~~~~e 625 (793)
++..+..+-+++..+++.+.++-+||..|+-++..+.++..+
T Consensus 13 le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 13 LEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence 333444444445555555555555555555555555544433
No 264
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=24.21 E-value=5.2e+02 Score=23.14 Aligned_cols=17 Identities=24% Similarity=0.468 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 003826 619 YESRWSEYEQKMKSMEE 635 (793)
Q Consensus 619 ~e~~~~ele~k~~~~ee 635 (793)
+..+..++...+..+++
T Consensus 72 l~~e~~~lk~~i~~le~ 88 (108)
T PF02403_consen 72 LKAEVKELKEEIKELEE 88 (108)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 265
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=23.96 E-value=2.3e+02 Score=33.05 Aligned_cols=42 Identities=17% Similarity=0.254 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 586 SFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYE 627 (793)
Q Consensus 586 ~~l~~l~~r~~~~e~~l~~~e~e~~~L~~~L~~~e~~~~ele 627 (793)
+++..|+-|+.++.++-..+..||..|+++|..+..+..+++
T Consensus 302 Ey~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~En~~~k 343 (655)
T KOG4343|consen 302 EYMLGLEARLQALLSENEQLKKENATLKRQLDELVSENQRLK 343 (655)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcCcccc
Confidence 455666777777888888888888888888888777655554
No 266
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=23.87 E-value=6.3e+02 Score=27.99 Aligned_cols=20 Identities=30% Similarity=0.529 Sum_probs=12.7
Q ss_pred HHHHHHHHHhHHHHHhHHHH
Q 003826 738 DKELRRLKQMFEAWKKDYGS 757 (793)
Q Consensus 738 ~~el~~lk~~f~~wkk~~~~ 757 (793)
.++|..|..+...=+++|..
T Consensus 241 ~~~l~~l~~~l~~l~~~~~~ 260 (344)
T PF12777_consen 241 QAELAELEEKLAALQKEYEE 260 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34566666677777777644
No 267
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=23.53 E-value=8.1e+02 Score=25.12 Aligned_cols=47 Identities=19% Similarity=0.212 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003826 608 ENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSLSIAKKS 654 (793)
Q Consensus 608 e~~~L~~~L~~~e~~~~ele~k~~~~ee~~qkq~~~lq~~L~a~~~s 654 (793)
....|++.|.+.+.++..+|+-|...|+.--.+...-|-.+.++..+
T Consensus 58 ~~~~L~~~LrEkEErILaLEad~~kWEqkYLEEs~mrq~a~dAaa~a 104 (205)
T PF12240_consen 58 NASNLKELLREKEERILALEADMTKWEQKYLEESAMRQFAMDAAATA 104 (205)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 35667888888888888888888877776544444555556555443
No 268
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=23.47 E-value=6.4e+02 Score=27.28 Aligned_cols=27 Identities=22% Similarity=0.308 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 610 DILHQRLQQYESRWSEYEQKMKSMEEV 636 (793)
Q Consensus 610 ~~L~~~L~~~e~~~~ele~k~~~~ee~ 636 (793)
+.|.-+++.+++++.+|..+..+++.+
T Consensus 251 E~l~ge~~~Le~rN~~LK~qa~~lerE 277 (294)
T KOG4571|consen 251 EALLGELEGLEKRNEELKDQASELERE 277 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444433
No 269
>PRK14160 heat shock protein GrpE; Provisional
Probab=23.40 E-value=5.5e+02 Score=26.54 Aligned_cols=50 Identities=20% Similarity=0.284 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 588 LAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVW 637 (793)
Q Consensus 588 l~~l~~r~~~~e~~l~~~e~e~~~L~~~L~~~e~~~~ele~k~~~~ee~~ 637 (793)
...++.+...++.++..+++++.+++.++..+.+....|..|+.+..+..
T Consensus 56 ~~~l~~e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~~kE~e~~ 105 (211)
T PRK14160 56 IEELKDENNKLKEENKKLENELEALKDRLLRTVAEYDNYRKRTAKEKEGI 105 (211)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666677777777777777777777777777777777776655543
No 270
>PF10376 Mei5: Double-strand recombination repair protein ; InterPro: IPR018468 Mei5 is one of a pair of meiosis-specific proteins which facilitate the loading of Dmc1 on to Rad51 on DNA at double-strand breaks during recombination. Recombination is carried out by a large protein complex based around the two RecA homologues, Rad51 and Dmc1 []. This complex may play both a catalytic and a structural role in the interaction between homologous chromosomes during meiosis. Mei5 is seen to contain a coiled-coli region.
Probab=22.97 E-value=5.4e+02 Score=26.81 Aligned_cols=54 Identities=26% Similarity=0.227 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 597 KAEAALREKEEENDILHQRL-QQYESRWSEYEQKMKSMEEVWQKQMRSLQSSLSI 650 (793)
Q Consensus 597 ~~e~~l~~~e~e~~~L~~~L-~~~e~~~~ele~k~~~~ee~~qkq~~~lq~~L~a 650 (793)
+++..+.+++++...|...- .+......+++..+...+...|.++.+|+..+..
T Consensus 142 kL~~q~~e~~e~lr~L~~~k~~r~Kn~~~~Lq~lI~Kwr~~~q~~l~eL~~~~~~ 196 (221)
T PF10376_consen 142 KLEKQVDEKEEELRRLKLVKQYRSKNDLEQLQSLIKKWRSASQEALYELQSEMSE 196 (221)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444444444444442222 1223334466666666666666666677766655
No 271
>PHA01976 helix-turn-helix protein
Probab=22.88 E-value=69 Score=25.94 Aligned_cols=57 Identities=11% Similarity=0.069 Sum_probs=35.3
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHHhcCeeEEeeCCCCceeecCchHHHHHHHHhCCCHHHHH
Q 003826 28 IVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLIGCDIGELK 93 (793)
Q Consensus 28 ~~~~Al~~lg~~~~~~~~if~ilaaILhLGNi~F~~~~~~~~~~~~~~~~l~~~a~LLGv~~~~L~ 93 (793)
.++.+....|++..+......+-.+ ++++++ ++ -..++.+.+..+|..|||+.+.|.
T Consensus 6 rl~~~R~~~glt~~~lA~~~gvs~~--~v~~~e-----~g--~~~p~~~~l~~ia~~l~v~~~~l~ 62 (67)
T PHA01976 6 QLIKARNARAWSAPELSRRAGVRHS--LIYDFE-----AD--KRLPNLKTLLRLADALGVTLDWLC 62 (67)
T ss_pred HHHHHHHHcCCCHHHHHHHhCCCHH--HHHHHH-----cC--CCCCCHHHHHHHHHHHCcCHHHHh
Confidence 4556667778887775555433211 112221 11 134677889999999999999873
No 272
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=22.82 E-value=9.4e+02 Score=25.67 Aligned_cols=19 Identities=21% Similarity=0.392 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 003826 587 FLAELQRRVLKAEAALREK 605 (793)
Q Consensus 587 ~l~~l~~r~~~~e~~l~~~ 605 (793)
.+..|+.++..+.+++...
T Consensus 82 ~l~~Lq~ql~~l~akI~k~ 100 (258)
T PF15397_consen 82 KLSKLQQQLEQLDAKIQKT 100 (258)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444433
No 273
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=22.68 E-value=5e+02 Score=29.94 Aligned_cols=6 Identities=17% Similarity=0.279 Sum_probs=2.3
Q ss_pred HHHhhh
Q 003826 217 CLNLFE 222 (793)
Q Consensus 217 ~ldlie 222 (793)
+.+++.
T Consensus 30 i~~~L~ 35 (451)
T PF03961_consen 30 ILEALR 35 (451)
T ss_pred HHHHHH
Confidence 333333
No 274
>COG4056 McrC Methyl coenzyme M reductase, subunit C [Coenzyme metabolism]
Probab=22.60 E-value=15 Score=35.43 Aligned_cols=29 Identities=31% Similarity=0.302 Sum_probs=25.7
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHHHhcCee
Q 003826 32 ALDIVHVSKEDQESVFAMLAAVLWLGNVS 60 (793)
Q Consensus 32 Al~~lg~~~~~~~~if~ilaaILhLGNi~ 60 (793)
.=.++|++++|+..|-+-=-|+.|||||.
T Consensus 87 ~g~tfgl~P~Eveqi~rHkl~ViHlGnvk 115 (204)
T COG4056 87 RGSTFGLSPEEVEQINRHKLAVIHLGNVK 115 (204)
T ss_pred cCCccccCHHHHHHhhhceEEEEEecchH
Confidence 44678999999999999989999999986
No 275
>PF08667 BetR: BetR domain; InterPro: IPR013975 CheY-like phosphoacceptor (or receiver [REC]) domain is a common module in a variety of response regulators of the bacterial signal transduction systems. BetR is one of the many response regulators and is encoded mainly in Burkholderia spp. It is a N-terminal helix-turn-helix domain (HTH) and has been shown to be related to the XRE-type HTH domain (IPR001387 from INTERPRO), it has been suggested that BetR would have dimerization, protein-protein interaction, and activation/relief-of-inhibition properties [].
Probab=22.51 E-value=1.9e+02 Score=28.06 Aligned_cols=68 Identities=28% Similarity=0.217 Sum_probs=46.0
Q ss_pred ccHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhcCeeEEeeCCCCceeecCchHHHHHHHHhCCCHHHHH
Q 003826 21 DDAEQFRIVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLIGCDIGELK 93 (793)
Q Consensus 21 dD~~~f~~~~~Al~~lg~~~~~~~~if~ilaaILhLGNi~F~~~~~~~~~~~~~~~~l~~~a~LLGv~~~~L~ 93 (793)
||..--..+++.|..-|+++.+.. .-||-||.|.-=.+.-.=++ -..-+-+.+..+|..+||+.++|.
T Consensus 2 ~~~~~~erV~~Ll~~~Gi~kr~~~---s~LA~iL~Is~ssa~RKL~G--~~~ftl~EI~~Ia~~fgvS~d~l~ 69 (147)
T PF08667_consen 2 DDQAIAERVRELLDRKGIPKRKHA---SELADILGISYSSAYRKLNG--KSPFTLEEIKKIAKHFGVSPDELF 69 (147)
T ss_pred hhHHHHHHHHHHHHHcCCcchhhH---HHHHHHHCCCHHHHHHHhcC--CCCCCHHHHHHHHHHhCcCHHHHH
Confidence 345566778999999999987653 57788886644333111011 112345679999999999999987
No 276
>PRK14161 heat shock protein GrpE; Provisional
Probab=22.41 E-value=6e+02 Score=25.53 Aligned_cols=46 Identities=11% Similarity=0.172 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 591 LQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEV 636 (793)
Q Consensus 591 l~~r~~~~e~~l~~~e~e~~~L~~~L~~~e~~~~ele~k~~~~ee~ 636 (793)
++.-+.-++.++..+++++.+++.++....++...|..|+.+..+.
T Consensus 17 ~~~~~~~~~~ei~~l~~e~~elkd~~lR~~AefeN~rkR~~ke~~~ 62 (178)
T PRK14161 17 AEEIVETANPEITALKAEIEELKDKLIRTTAEIDNTRKRLEKARDE 62 (178)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555566666666666666666666666666666555444
No 277
>PRK11677 hypothetical protein; Provisional
Probab=22.41 E-value=6.4e+02 Score=24.10 Aligned_cols=55 Identities=13% Similarity=0.146 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 003826 604 EKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSLSIAKKSLAID 658 (793)
Q Consensus 604 ~~e~e~~~L~~~L~~~e~~~~ele~k~~~~ee~~qkq~~~lq~~L~a~~~sla~~ 658 (793)
++++++++.+.+|++++.+..+-=++-..+-..+.+.-..|..-|+.....|..+
T Consensus 33 ~le~eLe~~k~ele~YkqeV~~HFa~TA~Ll~~L~~~Y~~Ly~HlA~~s~~Llp~ 87 (134)
T PRK11677 33 ALQYELEKNKAELEEYRQELVSHFARSAELLDTMAKDYRQLYQHMAKSSSELLPN 87 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 4445555566666666666655555556666666677778888888777777553
No 278
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=22.36 E-value=3e+02 Score=22.87 Aligned_cols=21 Identities=19% Similarity=0.430 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 003826 597 KAEAALREKEEENDILHQRLQ 617 (793)
Q Consensus 597 ~~e~~l~~~e~e~~~L~~~L~ 617 (793)
+++.++..+.+++.+|+.+++
T Consensus 28 ~l~~~i~~l~~e~~~L~~ei~ 48 (80)
T PF04977_consen 28 ELQKEIEELKKENEELKEEIE 48 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 279
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=22.33 E-value=1.7e+02 Score=23.83 Aligned_cols=12 Identities=58% Similarity=0.584 Sum_probs=4.3
Q ss_pred HHHHHHHHHHHH
Q 003826 612 LHQRLQQYESRW 623 (793)
Q Consensus 612 L~~~L~~~e~~~ 623 (793)
|+++|++.+.+.
T Consensus 37 LE~rL~~ae~ra 48 (60)
T PF11471_consen 37 LEQRLQAAEQRA 48 (60)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 280
>PRK11546 zraP zinc resistance protein; Provisional
Probab=22.27 E-value=7.2e+02 Score=24.06 Aligned_cols=27 Identities=15% Similarity=0.123 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 586 SFLAELQRRVLKAEAALREKEEENDIL 612 (793)
Q Consensus 586 ~~l~~l~~r~~~~e~~l~~~e~e~~~L 612 (793)
.+..+-..+...++..+..+..|+..|
T Consensus 54 ~I~~~f~~~t~~LRqqL~aKr~ELnAL 80 (143)
T PRK11546 54 KIHNDFYAQTSALRQQLVSKRYEYNAL 80 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555555555554
No 281
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=22.16 E-value=1.2e+03 Score=26.58 Aligned_cols=58 Identities=21% Similarity=0.263 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccc
Q 003826 605 KEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSLSIAKKSLAIDDSERNS 664 (793)
Q Consensus 605 ~e~e~~~L~~~L~~~e~~~~ele~k~~~~ee~~qkq~~~lq~~L~a~~~sla~~~~~~~~ 664 (793)
.+.+-.....++.++.++..|.+..+-.++++++++ .....|+.+.+.+.-....+++
T Consensus 88 ~en~~~r~~~eir~~~~q~~e~~n~~~~l~~~~~~~--r~~e~la~~~~~l~~~~~r~~s 145 (459)
T KOG0288|consen 88 AENLRIRSLNEIRELREQKAEFENAELALREMRRKM--RIAERLAEALKDLGLKDLRRQS 145 (459)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhccchhhHHHHHHHH--HHHHHHHHHhhhcchhhhhhhh
Confidence 334444455666667777777777777777777442 3344566666666544444443
No 282
>PF03338 Pox_J1: Poxvirus J1 protein; InterPro: IPR005006 This is a family of proteins expressed by members of the Poxviridae.
Probab=22.12 E-value=1.9e+02 Score=27.69 Aligned_cols=71 Identities=18% Similarity=0.189 Sum_probs=47.0
Q ss_pred cccHHHHHHHhhcCC-chHHHhhhcccccCCCCccCCCccCCCCCCCCccHHHHHHHHHHHHHHHHhccCCeeeeecCCC
Q 003826 291 LLHLDSIELLSSCSC-HLPQIFASNMLSQSNKPVVGPLYKAGGADSQKLSVATKFKGQLFQLMQRLESTTPHFIRCIKPN 369 (793)
Q Consensus 291 ~l~~~~~~ll~~S~~-~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~f~~~L~~Lm~~L~~t~~hfIrCIkPN 369 (793)
+|++++-.++.-+.. .+.++|.......+. ++. .-...-.+-|--++..|+..+.-..|--++||-||
T Consensus 64 plSe~~ral~~f~d~~~lr~lfnr~p~~~~~----~~V-------~v~~Gyl~DFV~s~~rL~ke~~~~~p~~~~YIdPr 132 (145)
T PF03338_consen 64 PLSEEFRALFEFRDMKELRKLFNRIPINVSD----GRV-------QVNKGYLSDFVISLIRLKKELGFDLPEPTTYIDPR 132 (145)
T ss_pred chhHHHHHHhhccccHHHHHHhccCCCCCCC----Cce-------EeccccHHHHHHHHHHHHHhcCCCCCCCceeeCCc
Confidence 677777677766653 477788532211111 110 01123467899999999999999999999999999
Q ss_pred CCC
Q 003826 370 NFQ 372 (793)
Q Consensus 370 ~~~ 372 (793)
...
T Consensus 133 ~~~ 135 (145)
T PF03338_consen 133 DDI 135 (145)
T ss_pred cch
Confidence 864
No 283
>PRK03918 chromosome segregation protein; Provisional
Probab=22.11 E-value=6.8e+02 Score=31.37 Aligned_cols=10 Identities=30% Similarity=0.846 Sum_probs=5.0
Q ss_pred eeeeeecccc
Q 003826 452 KLFFRAGQIG 461 (793)
Q Consensus 452 kVFlr~~~~~ 461 (793)
-||+..+.+.
T Consensus 129 ~~~~~Qg~~~ 138 (880)
T PRK03918 129 AIYIRQGEID 138 (880)
T ss_pred eEEEeccchH
Confidence 3555555443
No 284
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=22.05 E-value=1.8e+03 Score=28.51 Aligned_cols=17 Identities=29% Similarity=0.321 Sum_probs=11.4
Q ss_pred HHHHHHHHcCCCCccee
Q 003826 431 VSVAILHQFNILPEMYQ 447 (793)
Q Consensus 431 ~~~~il~~~~~~~~~~~ 447 (793)
....++..++++++.|.
T Consensus 121 ~~~~~l~~~~~~~~~~~ 137 (1164)
T TIGR02169 121 EIHDFLAAAGIYPEGYN 137 (1164)
T ss_pred HHHHHHHHcCCCcCcce
Confidence 34566777788777663
No 285
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=22.03 E-value=1.8e+02 Score=23.77 Aligned_cols=23 Identities=30% Similarity=0.268 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 003826 600 AALREKEEENDILHQRLQQYESR 622 (793)
Q Consensus 600 ~~l~~~e~e~~~L~~~L~~~e~~ 622 (793)
+++..+|+++++.+++++..+.+
T Consensus 32 qRLa~LE~rL~~ae~ra~~ae~~ 54 (60)
T PF11471_consen 32 QRLAALEQRLQAAEQRAQAAEAR 54 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333344444333
No 286
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=21.79 E-value=1.9e+03 Score=28.75 Aligned_cols=118 Identities=14% Similarity=0.152 Sum_probs=0.0
Q ss_pred HHHHHhhhhHHHHHHHHHhhHHHHhhhhhhhhhHhHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 536 RQKLKNIKYSSIMIQSVIRGWLVRRCSGDICLLKSVESKGNDSDEVLVKASFLAELQRRVLKAEAALREKEEENDILHQR 615 (793)
Q Consensus 536 R~~~~~~r~aai~IQs~~Rg~~aRr~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~r~~~~e~~l~~~e~e~~~L~~~ 615 (793)
+..+...+.....+......+..+.....-...............+......+..++.++..+...+..+..+...+...
T Consensus 799 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~ 878 (1163)
T COG1196 799 EEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDE 878 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 616 LQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSLSIAKK 653 (793)
Q Consensus 616 L~~~e~~~~ele~k~~~~ee~~qkq~~~lq~~L~a~~~ 653 (793)
+...+.+..+++..+..++....+.....+........
T Consensus 879 l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 916 (1163)
T COG1196 879 LKELEEEKEELEEELRELESELAELKEEIEKLRERLEE 916 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 287
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=21.56 E-value=6.5e+02 Score=31.03 Aligned_cols=55 Identities=13% Similarity=0.171 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 583 VKASFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVW 637 (793)
Q Consensus 583 ~~~~~l~~l~~r~~~~e~~l~~~e~e~~~L~~~L~~~e~~~~ele~k~~~~ee~~ 637 (793)
...+.+..||.+...++.++..+.+..+.++.++.+-+-++.++.+++..++.++
T Consensus 103 ~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eL 157 (1265)
T KOG0976|consen 103 HHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDEL 157 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3344455555555555555555555555555555444444444444444444443
No 288
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=21.48 E-value=1.9e+03 Score=28.78 Aligned_cols=54 Identities=20% Similarity=0.294 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhccc
Q 003826 604 EKEEENDILHQRLQQYESRWSEYEQKMKSMEE----VWQKQMRSLQSSLSIAKKSLAI 657 (793)
Q Consensus 604 ~~e~e~~~L~~~L~~~e~~~~ele~k~~~~ee----~~qkq~~~lq~~L~a~~~sla~ 657 (793)
+..++.+.++..+..+.....+.+.+...+.+ .+.++...++.++...+.+.+.
T Consensus 356 ~~~~~~~~l~~~~~~Lt~~~~di~~ky~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~~ 413 (1201)
T PF12128_consen 356 EWRNELENLQEQLDLLTSKHQDIESKYNKLKQKLEEAFNRQQERLQAQQDEIREEKAE 413 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666666655554444 3445555555555555555433
No 289
>PF12004 DUF3498: Domain of unknown function (DUF3498); InterPro: IPR021887 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with PF00616 from PFAM, PF00168 from PFAM. This domain has two conserved sequence motifs: DLQ and PLSFQNP. ; PDB: 3BXJ_B.
Probab=21.47 E-value=31 Score=40.05 Aligned_cols=48 Identities=29% Similarity=0.357 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 603 REKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSLSI 650 (793)
Q Consensus 603 ~~~e~e~~~L~~~L~~~e~~~~ele~k~~~~ee~~qkq~~~lq~~L~a 650 (793)
+.-|+|+..|++.|....++..|||.++..-|+.++|-+...+..|+.
T Consensus 372 e~YEqEI~~LkErL~~S~rkLeEyErrLl~QEqqt~Kll~qyq~RLed 419 (495)
T PF12004_consen 372 EKYEQEIQSLKERLRMSHRKLEEYERRLLSQEQQTQKLLLQYQARLED 419 (495)
T ss_dssp ------------------------------------------------
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhh
Confidence 346778888888888888888888888888887776666555555544
No 290
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=21.40 E-value=1.1e+03 Score=25.85 Aligned_cols=17 Identities=29% Similarity=0.167 Sum_probs=11.8
Q ss_pred CcchhhhhHHHHHhhhc
Q 003826 698 GLSVISRLAEEFDQRSQ 714 (793)
Q Consensus 698 ~~~~~~~l~~e~~~~~q 714 (793)
..+.|..|..|+.+-++
T Consensus 227 ~~shI~~Lr~EV~RLR~ 243 (310)
T PF09755_consen 227 LSSHIRSLRQEVSRLRQ 243 (310)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44567888888876655
No 291
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=21.37 E-value=1.6e+03 Score=27.72 Aligned_cols=30 Identities=33% Similarity=0.312 Sum_probs=19.3
Q ss_pred CHHHHHHHHHh---HHHHHhHHHHhhHHHHHHH
Q 003826 737 PDKELRRLKQM---FEAWKKDYGSRLRETKVIL 766 (793)
Q Consensus 737 ~~~el~~lk~~---f~~wkk~~~~rl~~~~~~~ 766 (793)
+.-|..|||++ .|.=|..--..|+++...|
T Consensus 263 ~~~EiqKL~qQL~qve~EK~~L~~~L~e~Q~qL 295 (717)
T PF09730_consen 263 NLSEIQKLKQQLLQVEREKSSLLSNLQESQKQL 295 (717)
T ss_pred chHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 34578888885 4555555666666666555
No 292
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=21.25 E-value=8.8e+02 Score=24.66 Aligned_cols=30 Identities=37% Similarity=0.504 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 588 LAELQRRVLKAEAALREKEEENDILHQRLQ 617 (793)
Q Consensus 588 l~~l~~r~~~~e~~l~~~e~e~~~L~~~L~ 617 (793)
+.+|+.++..++.++...+.++..|..+++
T Consensus 120 ReeL~~kL~~~~~~l~~~~~ki~~Lek~le 149 (194)
T PF15619_consen 120 REELQRKLSQLEQKLQEKEKKIQELEKQLE 149 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555544443
No 293
>PRK14127 cell division protein GpsB; Provisional
Probab=21.20 E-value=2.2e+02 Score=26.19 Aligned_cols=19 Identities=16% Similarity=0.191 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 003826 604 EKEEENDILHQRLQQYESR 622 (793)
Q Consensus 604 ~~e~e~~~L~~~L~~~e~~ 622 (793)
.+..++..|++++..++.+
T Consensus 41 ~l~~e~~~Lk~e~~~l~~~ 59 (109)
T PRK14127 41 AFQKEIEELQQENARLKAQ 59 (109)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444443333
No 294
>PHA02047 phage lambda Rz1-like protein
Probab=21.11 E-value=6.1e+02 Score=22.78 Aligned_cols=38 Identities=18% Similarity=0.325 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 611 ILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSL 648 (793)
Q Consensus 611 ~L~~~L~~~e~~~~ele~k~~~~ee~~qkq~~~lq~~L 648 (793)
.|..+|+..+.+...|...+..++....++..++...|
T Consensus 38 ~la~qLE~a~~r~~~~Q~~V~~l~~kae~~t~Ei~~aL 75 (101)
T PHA02047 38 RQTARLEALEVRYATLQRHVQAVEARTNTQRQEVDRAL 75 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444434333433333
No 295
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=20.82 E-value=6.5e+02 Score=30.46 Aligned_cols=74 Identities=19% Similarity=0.195 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 003826 578 SDEVLVKASFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSLSIAKKSL 655 (793)
Q Consensus 578 ~~~~~~~~~~l~~l~~r~~~~e~~l~~~e~e~~~L~~~L~~~e~~~~ele~k~~~~ee~~qkq~~~lq~~L~a~~~sl 655 (793)
...+...-..-..|+.++.+++.....+.+++.+|+..|+..+....++..++..+++.| ..+...++.....+
T Consensus 152 k~t~SRAlsQN~eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l----~~~~e~le~K~qE~ 225 (617)
T PF15070_consen 152 KATASRALSQNRELKEQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKL----HNLKEKLELKSQEA 225 (617)
T ss_pred chHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhhhHHH
No 296
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=20.81 E-value=6.1e+02 Score=27.75 Aligned_cols=29 Identities=10% Similarity=0.209 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 003826 630 MKSMEEVWQKQMRSLQSSLSIAKKSLAID 658 (793)
Q Consensus 630 ~~~~ee~~qkq~~~lq~~L~a~~~sla~~ 658 (793)
++..-..++.+...|+.+|..-..-+...
T Consensus 145 ~K~~~d~L~~e~~~Lre~L~~rdeli~kh 173 (302)
T PF09738_consen 145 QKRAHDSLREELDELREQLKQRDELIEKH 173 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 33444445566677777775554444433
No 297
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=20.77 E-value=9e+02 Score=24.60 Aligned_cols=6 Identities=17% Similarity=0.207 Sum_probs=2.1
Q ss_pred HHHHHH
Q 003826 611 ILHQRL 616 (793)
Q Consensus 611 ~L~~~L 616 (793)
.|+++.
T Consensus 106 ~Lqeen 111 (193)
T PF14662_consen 106 TLQEEN 111 (193)
T ss_pred HHHHHH
Confidence 333333
No 298
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=20.76 E-value=3.4e+02 Score=32.85 Aligned_cols=27 Identities=19% Similarity=0.332 Sum_probs=14.3
Q ss_pred hcCCCHHHHHHHHHHHHHHHHh--cCeeE
Q 003826 35 IVHVSKEDQESVFAMLAAVLWL--GNVSF 61 (793)
Q Consensus 35 ~lg~~~~~~~~if~ilaaILhL--GNi~F 61 (793)
.+|-+..-...++++|++++.- |.|.+
T Consensus 32 LvG~NGsGKSTLLkiL~G~~~pd~G~I~~ 60 (638)
T PRK10636 32 LVGKNGCGKSTLLALLKNEISADGGSYTF 60 (638)
T ss_pred EECCCCCCHHHHHHHHhCCCCCCCceEEe
Confidence 3455555555666666665432 44444
No 299
>PRK01919 tatB sec-independent translocase; Provisional
Probab=20.73 E-value=8.4e+02 Score=24.26 Aligned_cols=28 Identities=18% Similarity=0.367 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 624 SEYEQKMKSMEEVWQKQMRSLQSSLSIA 651 (793)
Q Consensus 624 ~ele~k~~~~ee~~qkq~~~lq~~L~a~ 651 (793)
.+++.....++...+.....++..+..+
T Consensus 64 ~~~e~~~~~v~~si~~~~~~~~~~~~~~ 91 (169)
T PRK01919 64 TDFESAARDVENTIHDNLSEHESDLNDA 91 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 3344444444444444444444444333
No 300
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=20.66 E-value=4.9e+02 Score=31.55 Aligned_cols=9 Identities=11% Similarity=0.228 Sum_probs=3.8
Q ss_pred HHHHHHhCC
Q 003826 79 ITVAKLIGC 87 (793)
Q Consensus 79 ~~~a~LLGv 87 (793)
..+...||+
T Consensus 130 ~~~L~~lgl 138 (638)
T PRK10636 130 ASLLHGLGF 138 (638)
T ss_pred HHHHHhCCC
Confidence 333444444
No 301
>PF12844 HTH_19: Helix-turn-helix domain; PDB: 3LIS_B 3LFP_A 2XIU_B 2GZU_B 2XJ3_A 1UTX_A 2XI8_B 3F6W_C 3EUS_B.
Probab=20.59 E-value=2.8e+02 Score=22.04 Aligned_cols=56 Identities=14% Similarity=0.202 Sum_probs=31.2
Q ss_pred HHHHHHhhcCCCHHHHHHHHHH-HHHHHHhcCeeEEeeCCCCceeecCchHHHHHHHHhCCCHHHHH
Q 003826 28 IVVEALDIVHVSKEDQESVFAM-LAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLIGCDIGELK 93 (793)
Q Consensus 28 ~~~~Al~~lg~~~~~~~~if~i-laaILhLGNi~F~~~~~~~~~~~~~~~~l~~~a~LLGv~~~~L~ 93 (793)
.++.+.+..|++..+......+ -+.|-++ .++. ..++...+..+|..|||+.+.|.
T Consensus 3 ~lk~~r~~~~lt~~~~a~~~~i~~~~i~~~--------e~g~--~~~~~~~l~~i~~~~~v~~~~l~ 59 (64)
T PF12844_consen 3 RLKELREEKGLTQKDLAEKLGISRSTISKI--------ENGK--RKPSVSTLKKIAEALGVSLDELF 59 (64)
T ss_dssp HHHHHHHHCT--HHHHHHHHTS-HHHHHHH--------HTTS--S--BHHHHHHHHHHHTS-HHHHC
T ss_pred HHHHHHHHcCCCHHHHHHHHCcCHHHHHHH--------HCCC--cCCCHHHHHHHHHHhCCCHHHHh
Confidence 4566667777777766654444 2222211 1111 14567789999999999998763
No 302
>PRK00846 hypothetical protein; Provisional
Probab=20.57 E-value=5.6e+02 Score=22.10 Aligned_cols=16 Identities=31% Similarity=0.187 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 003826 598 AEAALREKEEENDILH 613 (793)
Q Consensus 598 ~e~~l~~~e~e~~~L~ 613 (793)
++.++..+|..++-..
T Consensus 11 le~Ri~~LE~rlAfQe 26 (77)
T PRK00846 11 LEARLVELETRLSFQE 26 (77)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444433333
No 303
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=20.52 E-value=1.1e+03 Score=27.80 Aligned_cols=20 Identities=15% Similarity=0.164 Sum_probs=11.5
Q ss_pred CCCccChHHHHHHhhccccc
Q 003826 402 FPTRMSHQKFARRYGFLLLE 421 (793)
Q Consensus 402 yp~r~~~~~F~~RY~~L~~~ 421 (793)
-|..+||.+=+..-++|...
T Consensus 281 ~~~svpy~~a~~n~ril~ss 300 (518)
T PF10212_consen 281 CPESVPYEEALANRRILLSS 300 (518)
T ss_pred CCccCChHHHHhhhHHHhhh
Confidence 45566666666555555543
No 304
>PF14282 FlxA: FlxA-like protein
Probab=20.21 E-value=6.6e+02 Score=22.81 Aligned_cols=21 Identities=19% Similarity=0.390 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 003826 587 FLAELQRRVLKAEAALREKEE 607 (793)
Q Consensus 587 ~l~~l~~r~~~~e~~l~~~e~ 607 (793)
.+..|++++..+...+..+..
T Consensus 20 ~I~~L~~Qi~~Lq~ql~~l~~ 40 (106)
T PF14282_consen 20 QIEQLQKQIKQLQEQLQELSQ 40 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHc
Confidence 344455555555555544433
No 305
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=20.20 E-value=7.9e+02 Score=23.70 Aligned_cols=125 Identities=18% Similarity=0.105 Sum_probs=0.0
Q ss_pred hhHHHHHHHHhhhhHHHHHHHHHhhHHHHhhhhhhhhhHhHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 531 KSRVARQKLKNIKYSSIMIQSVIRGWLVRRCSGDICLLKSVESKGNDSDEVLVKASFLAELQRRVLKAEAALREKEEEND 610 (793)
Q Consensus 531 R~~~~R~~~~~~r~aai~IQs~~Rg~~aRr~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~r~~~~e~~l~~~e~e~~ 610 (793)
+..-.-...++.+.-..-++-.+-+.-+--....--........-....++..+...+..+......++.++..+..+..
T Consensus 4 K~l~v~~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~ 83 (140)
T PF10473_consen 4 KFLHVEEKLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKE 83 (140)
T ss_pred HHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 003826 611 ILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSLSIAKKSL 655 (793)
Q Consensus 611 ~L~~~L~~~e~~~~ele~k~~~~ee~~qkq~~~lq~~L~a~~~sl 655 (793)
.|.+.++..+.+..+++....+....++......-......+.++
T Consensus 84 ~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~E~ek~q~~e~~~~~v 128 (140)
T PF10473_consen 84 NLDKELQKKQEKVSELESLNSSLENLLQEKEQEKVQLKEESKSAV 128 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
No 306
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=20.12 E-value=1.4e+03 Score=26.72 Aligned_cols=26 Identities=27% Similarity=0.432 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 610 DILHQRLQQYESRWSEYEQKMKSMEE 635 (793)
Q Consensus 610 ~~L~~~L~~~e~~~~ele~k~~~~ee 635 (793)
..++.++.+++.+..|..+....-++
T Consensus 271 ~ql~aE~~EleDkyAE~m~~~~Eaee 296 (596)
T KOG4360|consen 271 RQLTAELEELEDKYAECMQMLHEAEE 296 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444333333333333333
Done!