Query 003826
Match_columns 793
No_of_seqs 406 out of 2098
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 05:22:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003826.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003826hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dfs_A Myosin-5A; myosin-V, in 100.0 9E-140 3E-144 1287.6 56.8 649 2-653 281-974 (1080)
2 1kk8_A Myosin heavy chain, str 100.0 4E-127 1E-131 1141.7 46.0 508 2-540 305-825 (837)
3 1i84_S Smooth muscle myosin he 100.0 9E-125 3E-129 1179.1 54.5 516 2-540 308-838 (1184)
4 1w7j_A Myosin VA; motor protei 100.0 7E-125 2E-129 1117.5 40.7 492 2-496 281-793 (795)
5 4anj_A Unconventional myosin-V 100.0 9E-123 3E-127 1122.0 39.9 540 2-551 267-854 (1052)
6 2ycu_A Non muscle myosin 2C, a 100.0 2E-120 8E-125 1108.2 46.7 528 2-532 278-824 (995)
7 1g8x_A Myosin II heavy chain f 100.0 3E-119 1E-123 1096.5 54.4 500 2-533 300-808 (1010)
8 1lkx_A Myosin IE heavy chain; 100.0 3E-120 9E-125 1064.7 37.6 455 2-471 222-696 (697)
9 4db1_A Myosin-7; S1DC, cardiac 100.0 1E-119 4E-124 1067.7 38.6 464 2-471 306-781 (783)
10 2v26_A Myosin VI; calmodulin-b 100.0 8E-119 3E-123 1065.8 39.4 475 2-485 263-784 (784)
11 1w9i_A Myosin II heavy chain; 100.0 2E-118 6E-123 1054.0 37.8 458 2-475 300-766 (770)
12 2dfs_A Myosin-5A; myosin-V, in 99.8 4.9E-18 1.7E-22 209.2 19.5 186 471-657 816-1041(1080)
13 2ix7_C Myosin-5A; contractIle 98.9 2.3E-10 7.7E-15 91.6 2.7 51 472-523 6-56 (58)
14 2ix7_C Myosin-5A; contractIle 98.9 1.7E-09 5.9E-14 86.4 7.4 50 520-569 5-54 (58)
15 1n2d_C IQ2 and IQ3 motifs from 98.9 1.9E-09 6.4E-14 82.7 6.1 46 493-539 2-47 (48)
16 1n2d_C IQ2 and IQ3 motifs from 98.7 2.6E-08 8.9E-13 76.3 6.4 42 521-562 4-47 (48)
17 1i84_S Smooth muscle myosin he 98.3 6.6E-06 2.3E-10 103.6 18.1 47 519-565 791-840 (1184)
18 2bl0_A Major plasmodial myosin 97.8 1.6E-05 5.5E-10 64.3 4.7 45 494-538 4-48 (63)
19 1wdc_A Scallop myosin; calcium 97.8 2.1E-05 7.1E-10 63.9 5.2 46 494-539 6-51 (64)
20 1wdc_A Scallop myosin; calcium 97.0 0.0014 4.6E-08 53.0 6.2 43 521-563 7-52 (64)
21 2bl0_A Major plasmodial myosin 96.9 0.0011 3.8E-08 53.4 5.6 43 521-563 5-50 (63)
22 1kk8_A Myosin heavy chain, str 96.8 0.0019 6.7E-08 77.5 8.9 49 519-567 778-829 (837)
23 3gn4_A Myosin-VI; unconvention 96.7 0.0083 2.8E-07 56.1 10.1 32 514-545 39-70 (148)
24 3gn4_A Myosin-VI; unconvention 95.7 0.083 2.8E-06 49.4 11.1 22 543-564 45-66 (148)
25 2kxw_B Sodium channel protein 93.2 0.05 1.7E-06 35.7 2.4 19 519-537 5-23 (27)
26 2l53_B CAM, voltage-gated sodi 93.2 0.071 2.4E-06 36.2 3.1 21 519-539 5-25 (31)
27 2l53_B CAM, voltage-gated sodi 88.8 0.27 9.1E-06 33.4 2.5 20 544-563 7-26 (31)
28 2kxw_B Sodium channel protein 87.4 0.34 1.1E-05 31.8 2.3 19 544-562 7-25 (27)
29 4anj_A Unconventional myosin-V 86.9 0.65 2.2E-05 57.1 6.3 31 530-560 784-814 (1052)
30 3a7p_A Autophagy protein 16; c 85.5 13 0.00045 34.6 12.8 69 580-648 69-137 (152)
31 1w7j_A Myosin VA; motor protei 77.8 1.9 6.6E-05 51.5 5.4 26 521-546 769-794 (795)
32 3hnw_A Uncharacterized protein 76.1 25 0.00085 32.4 11.3 44 591-634 80-123 (138)
33 2eqb_B RAB guanine nucleotide 76.0 21 0.0007 30.8 9.8 38 597-634 16-53 (97)
34 3na7_A HP0958; flagellar bioge 74.2 45 0.0016 33.8 14.1 73 578-650 89-161 (256)
35 3tnu_B Keratin, type II cytosk 71.5 28 0.00097 31.5 10.5 15 590-604 40-54 (129)
36 3cve_A Homer protein homolog 1 71.2 34 0.0012 27.8 9.4 43 599-641 6-48 (72)
37 2jee_A YIIU; FTSZ, septum, coi 69.7 47 0.0016 27.6 11.3 35 589-623 9-43 (81)
38 3cvf_A Homer-3, homer protein 69.4 18 0.00062 30.0 7.6 44 598-641 11-54 (79)
39 3o0z_A RHO-associated protein 68.6 57 0.002 30.9 12.0 62 597-658 94-155 (168)
40 2v71_A Nuclear distribution pr 68.2 28 0.00096 33.8 10.0 53 598-650 47-99 (189)
41 3tnu_A Keratin, type I cytoske 68.1 23 0.00077 32.3 9.0 16 625-640 88-103 (131)
42 2yy0_A C-MYC-binding protein; 66.2 5.5 0.00019 30.5 3.7 31 601-631 20-50 (53)
43 3bas_A Myosin heavy chain, str 65.0 26 0.00089 29.7 8.1 57 580-636 15-71 (89)
44 2oqq_A Transcription factor HY 64.8 24 0.00082 25.3 6.3 13 605-617 15-27 (42)
45 3qh9_A Liprin-beta-2; coiled-c 64.7 38 0.0013 28.0 8.5 36 602-637 21-56 (81)
46 2ycu_A Non muscle myosin 2C, a 64.6 0.91 3.1E-05 55.8 -1.6 43 523-565 767-809 (995)
47 2fxo_A Myosin heavy chain, car 62.9 88 0.003 28.2 12.0 10 621-630 83-92 (129)
48 3oja_B Anopheles plasmodium-re 62.8 1.3E+02 0.0045 34.0 16.4 55 583-637 506-560 (597)
49 3bas_A Myosin heavy chain, str 61.8 72 0.0025 26.9 12.1 38 599-636 13-50 (89)
50 2lw1_A ABC transporter ATP-bin 60.2 60 0.0021 27.3 9.6 15 623-637 65-79 (89)
51 4dck_A Sodium channel protein 59.7 7.9 0.00027 37.0 4.3 23 519-541 129-151 (168)
52 2fxo_A Myosin heavy chain, car 58.6 1E+02 0.0036 27.7 12.0 53 595-651 71-123 (129)
53 3na7_A HP0958; flagellar bioge 58.2 1E+02 0.0034 31.2 12.8 63 583-645 101-163 (256)
54 3ol1_A Vimentin; structural ge 56.9 1.1E+02 0.0037 27.3 12.2 37 601-637 63-99 (119)
55 1hjb_A Ccaat/enhancer binding 56.8 57 0.002 27.5 8.7 32 596-627 39-70 (87)
56 2lw1_A ABC transporter ATP-bin 56.4 61 0.0021 27.2 9.0 19 584-602 27-45 (89)
57 1wt6_A Myotonin-protein kinase 56.0 86 0.0029 25.9 10.2 35 603-637 34-68 (81)
58 2v66_B Nuclear distribution pr 54.4 1.1E+02 0.0039 26.9 11.6 65 581-649 37-101 (111)
59 2ocy_A RAB guanine nucleotide 54.2 1.4E+02 0.0048 27.9 11.9 74 584-657 63-147 (154)
60 3cvf_A Homer-3, homer protein 54.2 92 0.0031 25.8 9.2 54 591-644 11-64 (79)
61 1ci6_A Transcription factor AT 53.0 72 0.0025 25.0 8.2 29 596-624 26-54 (63)
62 1gd2_E Transcription factor PA 52.5 29 0.001 28.0 5.9 36 588-623 31-66 (70)
63 1t2k_D Cyclic-AMP-dependent tr 51.4 56 0.0019 25.4 7.4 30 596-625 25-54 (61)
64 3qh9_A Liprin-beta-2; coiled-c 51.3 96 0.0033 25.6 8.7 34 588-621 35-68 (81)
65 1x79_B RAB GTPase binding effe 51.1 81 0.0028 27.9 9.0 52 606-657 44-95 (112)
66 2wt7_A Proto-oncogene protein 50.2 68 0.0023 25.1 7.7 29 596-624 26-54 (63)
67 1wt6_A Myotonin-protein kinase 49.5 1.1E+02 0.0038 25.3 9.5 34 604-637 28-61 (81)
68 4emc_A Monopolin complex subun 49.1 58 0.002 31.4 8.3 44 588-631 22-65 (190)
69 3oja_B Anopheles plasmodium-re 49.1 95 0.0032 35.2 12.1 46 591-636 521-566 (597)
70 2v71_A Nuclear distribution pr 48.8 1.8E+02 0.0062 28.1 11.9 70 581-655 90-159 (189)
71 1ik9_A DNA repair protein XRCC 48.2 1.2E+02 0.004 30.0 10.9 64 591-654 137-204 (213)
72 4emc_A Monopolin complex subun 48.2 1.1E+02 0.0037 29.5 10.0 50 588-637 8-57 (190)
73 3vkg_A Dynein heavy chain, cyt 47.9 6.8E+02 0.023 34.7 21.2 35 740-774 2323-2358(3245)
74 2jee_A YIIU; FTSZ, septum, coi 46.1 1.3E+02 0.0044 25.0 12.0 32 599-630 26-57 (81)
75 1go4_E MAD1 (mitotic arrest de 45.4 1.3E+02 0.0046 25.9 9.3 22 636-657 72-93 (100)
76 1gd2_E Transcription factor PA 44.3 66 0.0022 26.0 6.8 17 594-610 30-46 (70)
77 4etp_A Kinesin-like protein KA 44.2 54 0.0019 35.7 8.5 56 596-655 6-61 (403)
78 3u1c_A Tropomyosin alpha-1 cha 43.9 1.6E+02 0.0053 25.4 12.9 37 596-632 33-69 (101)
79 1nkp_B MAX protein, MYC proto- 43.2 62 0.0021 26.7 6.8 39 580-618 41-79 (83)
80 3cve_A Homer protein homolog 1 43.0 1.3E+02 0.0045 24.3 9.8 52 593-644 7-58 (72)
81 2w83_C C-JUN-amino-terminal ki 42.9 1.2E+02 0.0041 24.8 8.0 41 597-637 34-74 (77)
82 1gk4_A Vimentin; intermediate 42.8 89 0.003 26.0 7.7 16 643-658 65-80 (84)
83 3tnu_B Keratin, type II cytosk 42.4 1.9E+02 0.0064 25.9 11.2 22 620-641 81-102 (129)
84 3mq9_A Bone marrow stromal ant 42.4 2.1E+02 0.0073 31.2 13.4 10 590-599 408-417 (471)
85 4etp_A Kinesin-like protein KA 41.5 63 0.0022 35.2 8.5 43 584-626 8-50 (403)
86 1fmh_A General control protein 41.4 60 0.0021 21.2 4.8 24 597-620 5-28 (33)
87 1nkp_A C-MYC, MYC proto-oncoge 41.0 1.2E+02 0.0041 25.5 8.3 41 579-619 45-85 (88)
88 2w6b_A RHO guanine nucleotide 40.9 1E+02 0.0034 23.5 6.7 39 595-633 12-50 (56)
89 1nlw_A MAD protein, MAX dimeri 40.9 71 0.0024 26.4 6.7 39 579-617 40-78 (80)
90 3m91_A Proteasome-associated A 38.9 1.2E+02 0.0042 22.8 7.2 21 599-619 15-35 (51)
91 2efr_A General control protein 38.5 2.5E+02 0.0085 26.2 11.2 51 588-638 79-129 (155)
92 2eqb_B RAB guanine nucleotide 38.5 1.4E+02 0.0047 25.7 8.2 32 585-616 32-63 (97)
93 3swk_A Vimentin; cytoskeleton, 38.4 1.7E+02 0.0059 24.4 8.9 36 602-637 44-79 (86)
94 1gu4_A CAAT/enhancer binding p 38.0 92 0.0031 25.7 6.9 31 596-626 39-69 (78)
95 1ic2_A Tropomyosin alpha chain 37.6 1.7E+02 0.0058 24.0 12.1 26 604-629 38-63 (81)
96 2yy0_A C-MYC-binding protein; 35.7 35 0.0012 26.0 3.7 23 594-616 27-49 (53)
97 1jnm_A Proto-oncogene C-JUN; B 35.7 56 0.0019 25.5 5.0 26 597-622 26-51 (62)
98 2h5n_A Hypothetical protein PG 35.6 20 0.00067 32.7 2.8 80 17-96 31-127 (133)
99 2v4h_A NF-kappa-B essential mo 35.5 2.3E+02 0.0077 24.8 11.5 13 633-645 91-103 (110)
100 3dvk_B Voltage-dependent R-typ 35.2 15 0.00051 23.0 1.2 16 521-536 7-22 (23)
101 2pnv_A Small conductance calci 34.8 55 0.0019 23.8 4.3 31 587-617 10-40 (43)
102 3efg_A Protein SLYX homolog; x 34.2 1.1E+02 0.0037 25.2 6.8 25 594-618 15-39 (78)
103 3mov_A Lamin-B1; LMNB1, B-type 33.8 35 0.0012 29.3 3.8 15 643-657 76-90 (95)
104 2v4h_A NF-kappa-B essential mo 33.5 2.4E+02 0.0084 24.6 12.0 16 639-654 90-105 (110)
105 3vkg_A Dynein heavy chain, cyt 33.5 2E+02 0.0068 39.8 12.7 22 740-761 2036-2057(3245)
106 2efr_A General control protein 33.4 3E+02 0.01 25.6 11.9 52 580-631 78-129 (155)
107 4e61_A Protein BIM1; EB1-like 32.9 2.5E+02 0.0084 24.5 9.4 51 589-639 7-57 (106)
108 3ra3_B P2F; coiled coil domain 32.2 39 0.0013 21.2 2.7 21 604-624 4-24 (28)
109 3swk_A Vimentin; cytoskeleton, 31.6 2.3E+02 0.0077 23.6 9.6 42 592-633 13-54 (86)
110 3u1c_A Tropomyosin alpha-1 cha 31.4 2.5E+02 0.0085 24.1 12.7 39 594-632 24-62 (101)
111 3m91_A Proteasome-associated A 31.2 1.7E+02 0.0058 22.0 7.0 31 604-634 13-43 (51)
112 1x8y_A Lamin A/C; structural p 31.1 55 0.0019 27.4 4.6 15 643-657 67-81 (86)
113 1deb_A APC protein, adenomatou 30.9 1.7E+02 0.0057 21.9 6.9 38 600-637 10-47 (54)
114 1ci6_A Transcription factor AT 30.7 1.9E+02 0.0065 22.5 7.5 31 607-637 23-53 (63)
115 3u06_A Protein claret segregat 30.6 1.3E+02 0.0044 32.8 8.7 55 597-655 7-61 (412)
116 1fmh_A General control protein 30.4 1.1E+02 0.0039 19.9 4.8 25 590-614 5-29 (33)
117 3q8t_A Beclin-1; autophagy, AT 30.3 2.5E+02 0.0087 23.8 12.8 34 587-620 12-45 (96)
118 4h22_A Leucine-rich repeat fli 29.9 1.1E+02 0.0037 26.6 6.2 13 643-655 69-81 (103)
119 1lwu_C Fibrinogen gamma chain; 29.8 1.3E+02 0.0045 31.6 8.2 39 595-633 14-52 (323)
120 3efg_A Protein SLYX homolog; x 29.4 1.6E+02 0.0054 24.2 6.9 14 642-655 45-58 (78)
121 1wle_A Seryl-tRNA synthetase; 28.8 3.4E+02 0.012 30.3 11.9 9 702-710 225-233 (501)
122 1dh3_A Transcription factor CR 28.1 1.2E+02 0.0041 23.1 5.6 26 595-620 24-49 (55)
123 2w83_C C-JUN-amino-terminal ki 27.9 1.5E+02 0.0051 24.2 6.3 44 588-631 32-75 (77)
124 3u59_A Tropomyosin beta chain; 27.7 2.9E+02 0.0098 23.6 12.5 38 596-633 33-70 (101)
125 3he5_A Synzip1; heterodimeric 27.6 1.6E+02 0.0056 20.8 6.8 21 596-616 6-26 (49)
126 1lwu_C Fibrinogen gamma chain; 27.4 1.4E+02 0.0049 31.3 8.0 36 594-629 20-55 (323)
127 3o0z_A RHO-associated protein 27.1 4E+02 0.014 25.1 17.1 40 588-627 92-138 (168)
128 2dgc_A Protein (GCN4); basic d 26.9 1.4E+02 0.0047 23.5 5.9 21 597-617 34-54 (63)
129 3u06_A Protein claret segregat 26.6 1.3E+02 0.0044 32.8 7.8 48 584-631 8-55 (412)
130 3qne_A Seryl-tRNA synthetase, 26.2 4.1E+02 0.014 29.5 11.9 6 724-729 205-210 (485)
131 2ocy_A RAB guanine nucleotide 26.1 3.2E+02 0.011 25.5 9.2 45 586-630 58-102 (154)
132 3a7p_A Autophagy protein 16; c 25.4 4.1E+02 0.014 24.6 11.1 37 588-624 98-134 (152)
133 3mq9_A Bone marrow stromal ant 25.2 6.7E+02 0.023 27.1 14.9 19 600-618 443-461 (471)
134 2dq0_A Seryl-tRNA synthetase; 25.2 3.8E+02 0.013 29.4 11.4 6 595-600 47-52 (455)
135 3u59_A Tropomyosin beta chain; 25.1 3.2E+02 0.011 23.3 12.9 34 595-628 25-58 (101)
136 3bxl_B CAM, voltage-dependent 25.1 47 0.0016 21.3 2.2 18 521-538 3-20 (26)
137 2ou3_A Tellurite resistance pr 24.9 1.3E+02 0.0045 27.8 6.6 74 17-96 42-137 (161)
138 2yko_A LINE-1 ORF1P; RNA-bindi 24.6 1.4E+02 0.0047 29.9 6.8 43 592-634 5-47 (233)
139 4dck_A Sodium channel protein 24.5 41 0.0014 32.0 2.9 21 544-564 131-151 (168)
140 2l5g_B Putative uncharacterize 24.4 1.8E+02 0.0062 20.9 5.4 22 614-635 16-37 (42)
141 3ghg_A Fibrinogen alpha chain; 24.2 4.5E+02 0.015 29.3 11.3 35 606-640 123-157 (562)
142 3iox_A AGI/II, PA; alpha helix 24.0 6.5E+02 0.022 27.8 12.5 14 643-656 91-104 (497)
143 3ol1_A Vimentin; structural ge 23.9 3.7E+02 0.013 23.6 12.8 41 590-630 31-71 (119)
144 1kd8_A GABH AIV, GCN4 acid bas 23.2 1.9E+02 0.0065 20.0 5.5 19 595-613 10-28 (36)
145 2e7s_A RAB guanine nucleotide 23.2 1.6E+02 0.0055 26.8 6.4 23 594-616 61-83 (135)
146 1a93_B MAX protein, coiled coi 23.0 1.3E+02 0.0043 20.8 4.2 23 608-630 8-30 (34)
147 2k48_A Nucleoprotein; viral pr 21.6 3.7E+02 0.013 23.2 7.9 9 642-650 92-100 (107)
148 1joc_A EEA1, early endosomal a 21.6 4.3E+02 0.015 23.4 9.8 27 592-618 10-36 (125)
149 1joc_A EEA1, early endosomal a 20.9 4.2E+02 0.014 23.5 8.8 38 597-634 8-45 (125)
150 1m1j_B Fibrinogen beta chain; 20.4 5.4E+02 0.018 28.4 11.2 10 698-707 299-308 (464)
151 3q8t_A Beclin-1; autophagy, AT 20.3 4E+02 0.014 22.6 12.1 62 589-654 28-89 (96)
No 1
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=100.00 E-value=9.3e-140 Score=1287.55 Aligned_cols=649 Identities=35% Similarity=0.598 Sum_probs=534.4
Q ss_pred CCccCccccCCCccccCCcccHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhcCeeEEeeCCCCceeecCchHHHHH
Q 003826 2 SAKEYKYLRQSSCYSINGVDDAEQFRIVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNENHVEPVADEGLITV 81 (793)
Q Consensus 2 ~~~~y~yL~~s~~~~~~~~dD~~~f~~~~~Al~~lg~~~~~~~~if~ilaaILhLGNi~F~~~~~~~~~~~~~~~~l~~~ 81 (793)
+|++|+||++|+|..++|+||+++|..|+.||++|||+++++.+||+|||||||||||+|...+++......+++.++.+
T Consensus 281 ~~~~y~yl~~~~~~~~~~~dD~~~f~~~~~A~~~lg~~~~e~~~i~~ilaaILhLGni~F~~~~~~~~~~~~~~~~l~~~ 360 (1080)
T 2dfs_A 281 NANYFHYTKQGGSPVIDGIDDAKEMVNTRQACTLLGISDSYQMGIFRILAGILHLGNVEFASRDSDSCAIPPKHDPLTIF 360 (1080)
T ss_dssp CTTTCTTTSTTSCCSCTTCCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCCCEEETTTEEECCSSCHHHHHH
T ss_pred CHHhcCcccCCCCCCCCCccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCceEEecCCcceeecCChHHHHHH
Confidence 58899999999999999999999999999999999999999999999999999999999987665433333688899999
Q ss_pred HHHhCCCHHHHHHHHccceeeecCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCcceeEEeecC
Q 003826 82 AKLIGCDIGELKLALSTRKMRVGNDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIY 161 (793)
Q Consensus 82 a~LLGv~~~~L~~~L~~~~i~~~~e~i~~~lt~~qA~~~RdaLak~LY~~LF~wiV~~IN~~L~~~~~~~~~~IgILDI~ 161 (793)
|.||||++++|.++||++++.+++|.+++++|++||.++||||||+||++||+|||.+||.+|.++. ....+|||||||
T Consensus 361 a~LLgv~~~~L~~~l~~~~~~~~~e~i~~~~~~~qa~~~rdalak~lY~~LF~wlV~~iN~~l~~~~-~~~~~IgvLDI~ 439 (1080)
T 2dfs_A 361 CDLMGVDYEEMAHWLCHRKLATATETYIKPISKLHAINARDALAKHIYANLFNWIVDHVNKALHSTV-KQHSFIGVLDIY 439 (1080)
T ss_dssp HHHHTCCHHHHHHHHHEEEECC----EEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSS-CCCEEEEEEEEC
T ss_pred HHHhCCCHHHHHHHhcccEEEeCCceEEeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccCceEEeeccC
Confidence 9999999999999999999999999999999999999999999999999999999999999998754 346799999999
Q ss_pred CCccCCCCChhHHHHHHhhHHHHHHHHHHhhHHHHHHHhhcCCcccccccCCchhHHHhhhcCCCccccccccccCCCCC
Q 003826 162 GFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEKKPLGLLSLLDEESTFPNG 241 (793)
Q Consensus 162 GFE~f~~NsfEQlcINyaNErLq~~f~~~~f~~eqeey~~EgI~~~~i~f~dN~~~ldlie~kp~Gil~lLdee~~~p~~ 241 (793)
|||+|+.|||||||||||||+|||+||+|+|+.||+||.+|||+|++|+|.||++|||||+++ .|||+||||||++|+|
T Consensus 440 GFE~f~~NsFEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~dn~~~idlie~~-~Gil~lLdee~~~p~~ 518 (1080)
T 2dfs_A 440 GFETFEINSFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIEAK-MGVLDLLDEECKMPKG 518 (1080)
T ss_dssp CCCCCSSBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTCCCCCCCHHHHHHHHST-TSHHHHHHHHTTSTTC
T ss_pred CccccCcCCHHHHHHHhhhHHHHHHHHHHhhHHHHHHHhhcCCccccccccccHHHHHHHhcC-CceeeeccccccCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999997 9999999999999999
Q ss_pred CcHHHHHHHHHHc-CCCCccccCC--CCCcEEEecCccccccccchhhhccccccHHHHHHHhhc-CCchH-HHhhhccc
Q 003826 242 TDLTFANKLKQHL-NSNPCFRGER--DKSFTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSC-SCHLP-QIFASNML 316 (793)
Q Consensus 242 tD~~f~~kl~~~~-~~~~~~~~~~--~~~F~I~HyaG~V~Y~~~gfleKN~D~l~~~~~~ll~~S-~~~~~-~lf~~~~~ 316 (793)
||.+|++||++.+ ++||+|..|+ ...|+|+||||+|.|++.||++||+|+|++++++||++| +++++ .+|+....
T Consensus 519 tD~~f~~kl~~~~~~~~~~f~~p~~~~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~~~~~v~~lf~~~~~ 598 (1080)
T 2dfs_A 519 SDDTWAQKLYNTHLNKCALFEKPRLSNKAFIIKHFADKVEYQCEGFLEKNKDTVYEEQIKVLKSSKKFKLLPELFQDEEK 598 (1080)
T ss_dssp CHHHHHHHHHHHHBTTBSSEECCTTCSSEEEEECSSCEEEEECTTHHHHHBCCCCHHHHHHHHTCSSCSHHHHSCC----
T ss_pred ChHHHHHHHHHHhhcCCCCccCCCCCCCceEEEecceEEEEehhhHHHhccccccHHHHHHHHcccccHHHHHHhccccc
Confidence 9999999999987 9999998875 579999999999999999999999999999999999999 99865 57864331
Q ss_pred ccC---CC---------CccCCCc--cCCCCCCCCccHHHHHHHHHHHHHHHHhccCCeeeeecCCCCCCCCCccchhHH
Q 003826 317 SQS---NK---------PVVGPLY--KAGGADSQKLSVATKFKGQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLV 382 (793)
Q Consensus 317 ~~~---~~---------~~~~~~~--~~~~~~~~~~tv~~~f~~~L~~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V 382 (793)
..+ .. ....|.+ .+++...+++||+++|+.||+.||++|.+|+||||||||||+.+.|+.||..+|
T Consensus 599 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~fk~sL~~Lm~~L~~t~phfVRCIkPN~~k~p~~fd~~~V 678 (1080)
T 2dfs_A 599 AISPTSATPSGRVPLSRTPVKPAKARPGQTSKEHKKTVGHQFRNSLHLLMETLNATTPHYVRCIKPNDFKFPFTFDEKRA 678 (1080)
T ss_dssp ---------------------------------CCCBHHHHHHHHHHHHHHHHHSSEEEEEEEECCCSSCCTTCCCHHHH
T ss_pred ccccccccccccccccccccccccccccccccCCCCcHHHHHHHHHHHHHHHHHhcCCeeEEEecCCCCCCchhcCHHhh
Confidence 110 00 0000000 001223457899999999999999999999999999999999999999999999
Q ss_pred HHHhhhhChhHHHHHHhcCCCCccChHHHHHHhhccccccCCCCChHHHHHHHHHHcCCCCcceeecceeeeeeeccccc
Q 003826 383 LQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFLLLESVASQDPLSVSVAILHQFNILPEMYQVGYTKLFFRAGQIGM 462 (793)
Q Consensus 383 ~~QLr~~gvle~vri~r~Gyp~r~~~~~F~~RY~~L~~~~~~~~d~~~~~~~il~~~~~~~~~~~vGkTkVFlr~~~~~~ 462 (793)
++||||+||||+|||+|+|||+|++|.+|+.||++|+|...+..|+++.|+.||..+++++++|++|+|||||+.+.+..
T Consensus 679 ~~QLr~~GvlE~iri~r~Gyp~R~~~~eF~~RY~~L~~~~~~~~d~k~~~~~il~~~~~~~~~~~~G~TKVF~r~g~l~~ 758 (1080)
T 2dfs_A 679 VQQLRACGVLETIRISAAGFPSRWTYQEFFSRYRVLMKQKDVLSDRKQTCKNVLEKLILDKDKYQFGKTKIFFRAGQVAY 758 (1080)
T ss_dssp HHHHHTTTHHHHHHHHTTSCCEEEEHHHHHHHHTTTSCGGGCCSSHHHHHHHHHTTTSCCGGGEEECSSEEEECTTHHHH
T ss_pred HHHHhhcccHHHHhHHhcCCCchhhHHHHHHHHHHHCCccCCCCChHHHHHHHHHHhcCChhhheeccccchhccchhhH
Confidence 99999999999999999999999999999999999999866655999999999999999999999999999999999999
Q ss_pred ccccccccch-hhHhhhhhhcccccchhhcccccchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHh
Q 003826 463 LEDTRNRTLH-GILRVQSCFRGHQARLCLKELRRGIVALQSFIRGEKIRKEYALVLQRHRAAVVIQRQIKSRVARQKLKN 541 (793)
Q Consensus 463 LE~~R~~~l~-aa~~IQ~~~Rg~~~R~~~~~~r~a~i~IQs~~Rg~~aRr~~~~l~~~~~AAi~IQ~~~R~~~~R~~~~~ 541 (793)
||.+|...+. +|+.||++||||++|++|++++.+++.||++|||+++|+.+..++ +.+||++||++||||++|+.|..
T Consensus 759 LE~~R~~~l~~aa~~IQa~~Rg~l~Rk~~~~~r~aai~IQ~~~Rg~~aR~~~~~lr-~~~AAi~IQs~~Rg~~~Rk~y~~ 837 (1080)
T 2dfs_A 759 LEKIRADKLRAACIRIQKTIRGWLMRKKYMRMRRAAITIQRYVRGHQARCYATFLR-RTRAAIIIQKFQRMYVVRKRYQC 837 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhcccccc-cchhHHHHHHHHhhHHHHHHHHH
Confidence 9999988775 678999999999999999999999999999999999999998776 67899999999999999999999
Q ss_pred hhhHHHHHHHHHhhHHHHhhhhhhhhhHh--------------HhhhcCChhHHHHHHHHHHHHHHHHH-----------
Q 003826 542 IKYSSIMIQSVIRGWLVRRCSGDICLLKS--------------VESKGNDSDEVLVKASFLAELQRRVL----------- 596 (793)
Q Consensus 542 ~r~aai~IQs~~Rg~~aRr~~~~l~~~~~--------------~~~~~~~~~~~~~~~~~l~~l~~r~~----------- 596 (793)
.+.+++.||+.|||+++|+.+..++...+ ..........+.++..++..++++..
T Consensus 838 lr~aai~IQs~~Rg~laRr~~~~lr~~~aav~IQ~~~Rg~l~R~~y~~~~~aai~iQs~~R~~laRr~~~~Lk~ear~~~ 917 (1080)
T 2dfs_A 838 MRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVE 917 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHTTTTHHHHHHHHHHHHHHHHHHHTTTC--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 99999999999999999999987764322 11111223445566666555554221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 597 KAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSLSIAKK 653 (793)
Q Consensus 597 ~~e~~l~~~e~e~~~L~~~L~~~e~~~~ele~k~~~~ee~~qkq~~~lq~~L~a~~~ 653 (793)
.+.+....+++++.+|++++++.++++.++++++..+++.++.+...|+.+++..++
T Consensus 918 ~l~~~~~~LE~kl~eLq~rL~~~e~~n~~L~~~~~~~~~~~~~e~~~L~~~l~~le~ 974 (1080)
T 2dfs_A 918 RYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRM 974 (1080)
T ss_dssp ---------------------------------CHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 111223456677777777777777777777777666666666666666554444333
No 2
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=100.00 E-value=4.1e-127 Score=1141.66 Aligned_cols=508 Identities=39% Similarity=0.686 Sum_probs=446.2
Q ss_pred CCccCccccCCCccccCCcccHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhcCeeEEeeCCCCceeecCchHHHHH
Q 003826 2 SAKEYKYLRQSSCYSINGVDDAEQFRIVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNENHVEPVADEGLITV 81 (793)
Q Consensus 2 ~~~~y~yL~~s~~~~~~~~dD~~~f~~~~~Al~~lg~~~~~~~~if~ilaaILhLGNi~F~~~~~~~~~~~~~~~~l~~~ 81 (793)
+|++|+||++| +..++++||+++|+.|+.||++|||+++++..||+|||||||||||+|...++++.+.+.+.+.++.+
T Consensus 305 ~~~~y~yL~~g-~~~~~~~dD~~~f~~~~~Am~~lGfs~~e~~~i~~ilAaILhLGNi~F~~~~~~~~~~~~~~~~l~~~ 383 (837)
T 1kk8_A 305 DSGLYSFINQG-CLTVDNIDDVEEFKLCDEAFDILGFTKEEKQSMFKCTASILHMGEMKFKQRPREEQAESDGTAEAEKV 383 (837)
T ss_dssp CGGGCTTTCSS-CSCBTTBCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCCEEC----CCCEESCSHHHHHH
T ss_pred ChhhcccccCC-CcccCCcChHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHhhccceEEecCCCCccccCCHHHHHHH
Confidence 58899999997 57899999999999999999999999999999999999999999999998766677889999999999
Q ss_pred HHHhCCCHHHHHHHHccceeeecCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCcceeEEeecC
Q 003826 82 AKLIGCDIGELKLALSTRKMRVGNDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIY 161 (793)
Q Consensus 82 a~LLGv~~~~L~~~L~~~~i~~~~e~i~~~lt~~qA~~~RdaLak~LY~~LF~wiV~~IN~~L~~~~~~~~~~IgILDI~ 161 (793)
|.||||++++|.++||++++.+|+|.+++++|++||.++||||||+||++||+|||.+||.+|... .....+|||||||
T Consensus 384 a~LLgv~~~~L~~aL~~~~~~~~~e~v~~~~~~~qA~~~rdalaK~lY~rLF~wlV~~IN~~l~~~-~~~~~~IGvLDI~ 462 (837)
T 1kk8_A 384 AFLCGINAGDLLKALLKPKVKVGTEMVTKGQNMNQVVNSVGALAKSLYDRMFNWLVRRVNKTLDTK-AKRNYYIGVLDIA 462 (837)
T ss_dssp HHHHTSCHHHHHHHHHSCEEC----CEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCCEEEEEEECC
T ss_pred HHHHCCCHHHHHHHhcCcEEEcCCceEEeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-CCCcceEEEEecC
Confidence 999999999999999999999999999999999999999999999999999999999999999843 3456799999999
Q ss_pred CCccCCCCChhHHHHHHhhHHHHHHHHHHhhHHHHHHHhhcCCccccccc-CCchhHHHhhhcCCCccccccccccCCCC
Q 003826 162 GFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDF-EDNKDCLNLFEKKPLGLLSLLDEESTFPN 240 (793)
Q Consensus 162 GFE~f~~NsfEQlcINyaNErLq~~f~~~~f~~eqeey~~EgI~~~~i~f-~dN~~~ldlie~kp~Gil~lLdee~~~p~ 240 (793)
|||+|+.|||||||||||||+|||+||+|+|+.||+||.+|||+|+.|+| .||++|||||++ |.|||+||||||++|+
T Consensus 463 GFE~f~~NsFEQlcINyaNEkLQq~Fn~~~f~~EqeeY~~EgI~w~~i~f~~dn~~~idLiek-p~GIlslLDEec~~p~ 541 (837)
T 1kk8_A 463 GFEIFDFNSFEQLCINYTNERLQQFFNHHMFILEQEEYKKEGIAWEFIDFGMDLQMCIDLIEK-PMGILSILEEECMFPK 541 (837)
T ss_dssp CCCCCSSBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSCCCCHHHHHHHHHHHS-TTSHHHHHHHHTTCTT
T ss_pred CccccccccHHHHHHHHhhHHHHHHHHHhhhHHHHHHhhhcCCceeecccccCHHHHHHHHhc-CCcHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999999999 499999999998 8999999999999999
Q ss_pred CCcHHHHHHH-HHHcCCCCccccCC--------CCCcEEEecCccccccccchhhhccccccHHHHHHHhhcCCchH-HH
Q 003826 241 GTDLTFANKL-KQHLNSNPCFRGER--------DKSFTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCSCHLP-QI 310 (793)
Q Consensus 241 ~tD~~f~~kl-~~~~~~~~~~~~~~--------~~~F~I~HyaG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~~~~~-~l 310 (793)
+||.+|++|| .+++++||+|..++ ...|+|+||||+|.|+++||++||+|+|++++++||++|+++++ .+
T Consensus 542 ~tD~tf~~kl~~~~~~~~~~f~~p~~~~~k~~~~~~F~I~HyAG~V~Y~~~gfleKNkD~l~~~~~~ll~~S~~~~v~~L 621 (837)
T 1kk8_A 542 ADDKSFQDKLYQNHMGKNRMFTKPGKPTRPNQGPAHFELHHYAGNVPYSITGWLEKNKDPINENVVALLGASKEPLVAEL 621 (837)
T ss_dssp CCHHHHHHHHHHHHTTTCSSEECCCSCSSTTCCCCSEEEEETTEEEEECCSSHHHHHSCCCCHHHHHHHHTCSSHHHHHH
T ss_pred CChHHHHHHHHHHhcCCCcCccCCCccccccccCCceEEeeccCcccccHHHHHHhccccccHHHHHHHHhchHHHHHHH
Confidence 9999999996 56789999997664 46899999999999999999999999999999999999999975 58
Q ss_pred hhhcccccCCCCccCCCccCCCCCCCCccHHHHHHHHHHHHHHHHhccCCeeeeecCCCCCCCCCccchhHHHHHhhhhC
Q 003826 311 FASNMLSQSNKPVVGPLYKAGGADSQKLSVATKFKGQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCG 390 (793)
Q Consensus 311 f~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~f~~~L~~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~g 390 (793)
|+.... .++ .+. +..+.....+||+++|+.||+.||++|.+|+||||||||||+.+.|+.||..+|++||||+|
T Consensus 622 f~~~~~-~~g---~~~--~~k~~~~~~~Tv~~~fk~sL~~Lm~~L~~t~phfVRCIkPN~~k~p~~fd~~~V~~QLr~~G 695 (837)
T 1kk8_A 622 FKAPEE-PAG---GGK--KKKGKSSAFQTISAVHRESLNKLMKNLYSTHPHFVRCIIPNELKQPGLVDAELVLHQLQCNG 695 (837)
T ss_dssp TCC------------------------CCHHHHHHHHHHHHHHHHTTEEEEEEEEECCCSSCCTTCCCHHHHHHHHTTSS
T ss_pred hccccc-ccC---CCC--CCCCCCCCCCchHHHHHHHHHHHHHHHHccCCeeeeeeCCCccCCcccccchheeeeccccC
Confidence 865321 110 010 11111234689999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhcCCCCccChHHHHHHhhccccccCCC--CChHHHHHHHHHHcCCCCcceeecceeeeeeeccccccccccc
Q 003826 391 VLEVVRISRSGFPTRMSHQKFARRYGFLLLESVAS--QDPLSVSVAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTRN 468 (793)
Q Consensus 391 vle~vri~r~Gyp~r~~~~~F~~RY~~L~~~~~~~--~d~~~~~~~il~~~~~~~~~~~vGkTkVFlr~~~~~~LE~~R~ 468 (793)
|||+|||+|+|||+|++|.+|+.||++|.|..++. .|+++.|+.+|..+++++++|++|+||||||.+++..||++|.
T Consensus 696 vlE~iri~r~Gfp~R~~f~eF~~RY~~L~~~~~~~~~~d~k~~~~~ll~~~~~~~~~~~~G~TKVF~r~~~~~~LE~~r~ 775 (837)
T 1kk8_A 696 VLEGIRICRKGFPSRLIYSEFKQRYSILAPNAIPQGFVDGKTVSEKILAGLQMDPAEYRLGTTKVFFKAGVLGNLEEMRD 775 (837)
T ss_dssp SCC-----CCCSCEEEEHHHHHHHHGGGSGGGCCC---CHHHHHHHHHHHHTCCGGGEEECSSEEEECTTHHHHHHHHHH
T ss_pred ccHHHHHHHHhccccccHHHHHHHHHHhcccccccCCCCHHHHHHHHHHHcCCCccceeecCEEEEehhhHHHHHHHHHH
Confidence 99999999999999999999999999999987764 4899999999999999999999999999999999999999987
Q ss_pred ccchhhHhhhhhhcccccchhhcccccchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHH
Q 003826 469 RTLHGILRVQSCFRGHQARLCLKELRRGIVALQSFIRGEKIRKEYALVLQRHRAAVVIQRQIKSRVARQKLK 540 (793)
Q Consensus 469 ~~l~aa~~IQ~~~Rg~~~R~~~~~~r~a~i~IQs~~Rg~~aRr~~~~l~~~~~AAi~IQ~~~R~~~~R~~~~ 540 (793)
..+.. .++.||++|||+++|++|.+++.++.|+++||++||+|++|+.|.
T Consensus 776 ~~l~~----------------------~~~~iQa~~Rg~l~R~~~~k~~~~r~a~~~IQ~~~R~~~~~r~~~ 825 (837)
T 1kk8_A 776 ERLSK----------------------IISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNWQ 825 (837)
T ss_dssp HHHHH----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHh----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchH
Confidence 65543 356778888888888888888777788999999999998877654
No 3
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=100.00 E-value=9e-125 Score=1179.09 Aligned_cols=516 Identities=34% Similarity=0.587 Sum_probs=457.3
Q ss_pred CCccCccccCCCccccCCcccHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhcCeeEEeeCCCCceeecCchHHHHH
Q 003826 2 SAKEYKYLRQSSCYSINGVDDAEQFRIVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNENHVEPVADEGLITV 81 (793)
Q Consensus 2 ~~~~y~yL~~s~~~~~~~~dD~~~f~~~~~Al~~lg~~~~~~~~if~ilaaILhLGNi~F~~~~~~~~~~~~~~~~l~~~ 81 (793)
+|++|+||++| |..++|+||+++|..|+.||++|||+++++..||+|||||||||||+|....+++.+.+.+.+.++.+
T Consensus 308 ~~~~~~yl~~~-~~~~~~~~d~~~f~~~~~a~~~lg~~~~e~~~i~~ilaaiLhlGni~f~~~~~~~~~~~~~~~~~~~~ 386 (1184)
T 1i84_S 308 GFNNYTFLSNG-HVPIPAQQDDEMFQETLEAMTIMGFTEEEQTSILRVVSSVLQLGNIVFKKERNTDQASMPDNTAAQKV 386 (1184)
T ss_dssp CTTSCSSCTTS-SCCCTTCCHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTTTCCCBCCTTTSCCBCCCSHHHHHH
T ss_pred ChHhCCccCCC-CcCCCCCChHHHHHHHHHHHHhceeCHHHHHHHHHHHHHHHhhcCceeeccCCCcCcccCChHHHHHH
Confidence 68899999986 56899999999999999999999999999999999999999999999987666677888899999999
Q ss_pred HHHhCCCHHHHHHHHccceeeecCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCcceeEEeecC
Q 003826 82 AKLIGCDIGELKLALSTRKMRVGNDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIY 161 (793)
Q Consensus 82 a~LLGv~~~~L~~~L~~~~i~~~~e~i~~~lt~~qA~~~RdaLak~LY~~LF~wiV~~IN~~L~~~~~~~~~~IgILDI~ 161 (793)
|.||||++++|.++||++++.+|++.|++++|++||.++||||||+||++||+|||.+||.+|.+.......+|||||||
T Consensus 387 a~lLg~~~~~l~~~l~~~~~~~~~e~~~~~~~~~~a~~~rdalak~lY~~lF~wlv~~iN~~l~~~~~~~~~~IgvLDi~ 466 (1184)
T 1i84_S 387 CHLMGINVTDFTRSILTPRIKVGRDVVQKAQTKEQADFAIEALAKAKFERLFRWILTRVNKALDKTKRQGASFLGILDIA 466 (1184)
T ss_dssp HHHTTSCHHHHHHHHHSCCCCCTTSCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCC------CEEEEEEECC
T ss_pred HHHHCCCHHHHHHHhcCcEEEeCCceEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccCCcceEEEeecC
Confidence 99999999999999999999999999999999999999999999999999999999999999986534456899999999
Q ss_pred CCccCCCCChhHHHHHHhhHHHHHHHHHHhhHHHHHHHhhcCCcccccccC-CchhHHHhhhcC--CCccccccccccCC
Q 003826 162 GFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFE-DNKDCLNLFEKK--PLGLLSLLDEESTF 238 (793)
Q Consensus 162 GFE~f~~NsfEQlcINyaNErLq~~f~~~~f~~eqeey~~EgI~~~~i~f~-dN~~~ldlie~k--p~Gil~lLdee~~~ 238 (793)
|||+|+.|||||||||||||+|||+||+|+|+.||+||..|||+|++|+|. ||++|||||+++ |.|||+||||||++
T Consensus 467 GFE~f~~NsfeQlciNy~nEkLq~~f~~~~f~~eq~ey~~Egi~~~~i~~~~dn~~~~~lie~~~~~~Gil~lLdee~~~ 546 (1184)
T 1i84_S 467 GFEIFEINSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGLDLQPCIELIERPTNPPGVLALLDEECWF 546 (1184)
T ss_dssp CCCCCSSBCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTCSCCCCCCCCCCHHHHHTTSCCSSSCCHHHHHHHTTSC
T ss_pred CcCCCCcchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCccccccCCCcHHHHHHHhCCCCCCCchhhhhhhhCC
Confidence 999999999999999999999999999999999999999999999999994 999999999973 34999999999999
Q ss_pred CCCCcHHHHHHHHHHcCCCCccccCC----CCCcEEEecCccccccccchhhhccccccHHHHHHHhhcCCchH-HHhhh
Q 003826 239 PNGTDLTFANKLKQHLNSNPCFRGER----DKSFTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCSCHLP-QIFAS 313 (793)
Q Consensus 239 p~~tD~~f~~kl~~~~~~~~~~~~~~----~~~F~I~HyaG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~~~~~-~lf~~ 313 (793)
|++||.+|++||++.+++||+|..|+ ...|+|+||||+|.|++.|||+||+|+|+++++.||.+|+++++ .+|+.
T Consensus 547 p~~td~~~~~kl~~~~~~~~~~~~~~~~~~~~~F~i~Hyag~V~Y~~~gfl~kN~d~l~~~~~~ll~~s~~~~~~~lf~~ 626 (1184)
T 1i84_S 547 PKATDTSFVEKLIQEQGNHAKFQKSKQLKDKTEFCILHYAGKVTYNASAWLTKNMDPLNDNVTSLLNQSSDKFVADLWKD 626 (1184)
T ss_dssp TTCCHHHHHHHHHHHTSSCTTEEECSSCTTTCEEEEECSSCEEEEECTTHHHHHHCCCCHHHHHHHHTCSCHHHHHHHSC
T ss_pred CCCChHHHHHHHHHHhCCCCCccCCCCCCCCCcEEEECCCceEEeccCCchhhccCcccHHHHHHHHhCchHHHHHHhcc
Confidence 99999999999999999999998765 46899999999999999999999999999999999999999975 58865
Q ss_pred cccccCCCCccCC-----CccCCCCCCCCccHHHHHHHHHHHHHHHHhccCCeeeeecCCCCCCCCCccchhHHHHHhhh
Q 003826 314 NMLSQSNKPVVGP-----LYKAGGADSQKLSVATKFKGQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRC 388 (793)
Q Consensus 314 ~~~~~~~~~~~~~-----~~~~~~~~~~~~tv~~~f~~~L~~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~ 388 (793)
.....+.....++ ...........+||+++|+.||+.||.+|.+|+||||||||||+.+.|+.||..+|++||||
T Consensus 627 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~f~~~l~~L~~~l~~t~phfvRCIkPN~~k~p~~fd~~~V~~QLr~ 706 (1184)
T 1i84_S 627 VDRIVGLDQMAKMTESSLPSASKTKKGMFRTVGQLYKEQLTKLMTTLRNTNPNFVRCIIPNHEKRAGKLDAHLVLEQLRC 706 (1184)
T ss_dssp CTTCCCC---------------------CCCHHHHHHHHHHHHHHHHTTSEEEECCEECCCSSCCSSCCCHHHHHHHHHH
T ss_pred ccccccccccccccccccCccccccCCCCCcHHHHHHHHHHHHHHHHHhcCCCceeeeCCCCcCCCCcccHHHHHHHHhh
Confidence 4321111000000 00001112346899999999999999999999999999999999999999999999999999
Q ss_pred hChhHHHHHHhcCCCCccChHHHHHHhhccccccCCC--CChHHHHHHHHHHcCCCCcceeecceeeeeeeccccccccc
Q 003826 389 CGVLEVVRISRSGFPTRMSHQKFARRYGFLLLESVAS--QDPLSVSVAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDT 466 (793)
Q Consensus 389 ~gvle~vri~r~Gyp~r~~~~~F~~RY~~L~~~~~~~--~d~~~~~~~il~~~~~~~~~~~vGkTkVFlr~~~~~~LE~~ 466 (793)
+||||+|||+|+|||+|++|.+|+.||++|.|...+. .|++..|..+|..++++++.|++|+|||||+.+.+..||.+
T Consensus 707 ~GvlE~iri~r~Gfp~R~~~~~F~~ry~~L~~~~~~~~~~d~k~~~~~lL~~l~l~~~~~~iG~TKVF~r~g~l~~LE~~ 786 (1184)
T 1i84_S 707 NGVLEGIRICRQGFPNRIVFQEFRQRYEILAANAIPKGFMDGKQACILMIKALELDPNLYRIGQSKIFFRTGVLAHLEEE 786 (1184)
T ss_dssp TTHHHHHHHHHHSCCEEEEHHHHHHHTTTTCTTTSCSSCCCHHHHHHHHHHTTTCCTTTCCBCSSEEEECTTHHHHHHHH
T ss_pred cCchHHHHhHhhcCcccccHHHHHHHHHHhccccCCcCCCCHHHHHHHHHHHcCCCccceeEcCeEEEEechHHHHHHHH
Confidence 9999999999999999999999999999999887764 38899999999999999999999999999999999999998
Q ss_pred ccccchhhHhhhhhhcccccchhhcccccchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHH
Q 003826 467 RNRTLHGILRVQSCFRGHQARLCLKELRRGIVALQSFIRGEKIRKEYALVLQRHRAAVVIQRQIKSRVARQKLK 540 (793)
Q Consensus 467 R~~~l~aa~~IQ~~~Rg~~~R~~~~~~r~a~i~IQs~~Rg~~aRr~~~~l~~~~~AAi~IQ~~~R~~~~R~~~~ 540 (793)
|...+.. .++.||++||||++|+.|.+++.++.|+++||++||+|+.|+.|.
T Consensus 787 r~~~l~~----------------------~~~~iQ~~~Rg~l~R~~~~k~~~~~~a~~~iQ~~~r~~~~~k~~~ 838 (1184)
T 1i84_S 787 RDLKITD----------------------VIIAFQAQCRGYLARKAFAKRQQQLESIFCIQYNVRSFMNVXHWP 838 (1184)
T ss_dssp HHHHTHH----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHH----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 8765432 356777778888888888777767778888888888888887654
No 4
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=100.00 E-value=6.5e-125 Score=1117.47 Aligned_cols=492 Identities=40% Similarity=0.686 Sum_probs=436.8
Q ss_pred CCccCccccCCCccccCCcccHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhcCeeEEeeCCCCceee-cCchHHHH
Q 003826 2 SAKEYKYLRQSSCYSINGVDDAEQFRIVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNENHVEP-VADEGLIT 80 (793)
Q Consensus 2 ~~~~y~yL~~s~~~~~~~~dD~~~f~~~~~Al~~lg~~~~~~~~if~ilaaILhLGNi~F~~~~~~~~~~~-~~~~~l~~ 80 (793)
+|++|+||++|+|..++++||+++|+.|+.||++|||+++++..||+|||||||||||+|...+++ .+.+ .+++.++.
T Consensus 281 ~~~~y~yl~~~~~~~~~~~dD~~~f~~~~~Am~~lG~s~~e~~~i~~ilaaILhLGNi~F~~~~~~-~~~v~~~~~~l~~ 359 (795)
T 1w7j_A 281 NANYFHYTKQGGSPVIDGIDDAKEMVNTRQACTLLGISDSYQMGIFRILAGILHLGNVEFASRDSD-SCAIPPKHDPLTI 359 (795)
T ss_dssp CTTTSHHHHTTSCCCCTTCCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTCCCEEEETT-EEECCTTCHHHHH
T ss_pred ChHhCccccCCCCCcCCCccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCceEeecCCc-ceeecCChHHHHH
Confidence 578999999999999999999999999999999999999999999999999999999999876654 3444 67889999
Q ss_pred HHHHhCCCHHHHHHHHccceeeecCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCcceeEEeec
Q 003826 81 VAKLIGCDIGELKLALSTRKMRVGNDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDI 160 (793)
Q Consensus 81 ~a~LLGv~~~~L~~~L~~~~i~~~~e~i~~~lt~~qA~~~RdaLak~LY~~LF~wiV~~IN~~L~~~~~~~~~~IgILDI 160 (793)
+|.||||++++|.++||++++.+++|.+++++|++||.++||||||+||++||+|||.+||.+|.++.. ...+||||||
T Consensus 360 ~a~LLgv~~~~L~~aL~~~~~~~~~e~v~~~~~~~qA~~~rdalaK~lY~rLF~wlV~~IN~~l~~~~~-~~~~IGvLDI 438 (795)
T 1w7j_A 360 FCDLMGVDYEEMAHWLCHRKLATATETYIKPISKLHAINARDALAKHIYANLFNWIVDHVNKALHSTVK-QHSFIGVLDI 438 (795)
T ss_dssp HHHHHTCCHHHHHHHHSEEEEECSSCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSSC-CSEEEEEEEC
T ss_pred HHHHhCCCHHHHHHHhcccEEEeCCceecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcc-ccceEEeecc
Confidence 999999999999999999999999999999999999999999999999999999999999999987543 4679999999
Q ss_pred CCCccCCCCChhHHHHHHhhHHHHHHHHHHhhHHHHHHHhhcCCcccccccCCchhHHHhhhcCCCccccccccccCCCC
Q 003826 161 YGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEKKPLGLLSLLDEESTFPN 240 (793)
Q Consensus 161 ~GFE~f~~NsfEQlcINyaNErLq~~f~~~~f~~eqeey~~EgI~~~~i~f~dN~~~ldlie~kp~Gil~lLdee~~~p~ 240 (793)
||||+|+.|||||||||||||+|||+||+|+|+.||+||.+|||+|+.|+|.||++|||||+++ .|||+||||||++|+
T Consensus 439 ~GFE~f~~NsFEQlcINyaNEkLQq~Fn~~~F~~EqeeY~~EgI~w~~i~f~DN~~~idLie~~-~GIlslLDEec~~p~ 517 (795)
T 1w7j_A 439 YGFETFEINSFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIEAK-MGVLDLLDEECKMPK 517 (795)
T ss_dssp CCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCCCCCHHHHHHHHST-TSHHHHHHHHHTSTT
T ss_pred CcccccCcCCHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcCCcccccCccccHHHHHHHHhc-CCHHHhhhhhccCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999997 999999999999999
Q ss_pred CCcHHHHHHHHHHc-CCCCccccCC--CCCcEEEecCccccccccchhhhccccccHHHHHHHhhcC-CchH-HHhhhcc
Q 003826 241 GTDLTFANKLKQHL-NSNPCFRGER--DKSFTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCS-CHLP-QIFASNM 315 (793)
Q Consensus 241 ~tD~~f~~kl~~~~-~~~~~~~~~~--~~~F~I~HyaG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~-~~~~-~lf~~~~ 315 (793)
+||.+|++||++++ ++||+|..++ ...|+|+||||+|.|++.||++||+|+|++++++||++|+ ++++ .+|....
T Consensus 518 ~tD~~f~~kl~~~~~~~~~~f~~p~~~~~~F~I~HyAG~V~Y~~~gfleKNkD~l~~~~~~ll~~S~~~~~v~~lf~~~~ 597 (795)
T 1w7j_A 518 GSDDTWAQKLYNTHLNKCALFEKPRLSNKAFIIKHFADKVEYQCEGFLEKNKDTVYEEQIKVLKSSKKFKLLPELFQDEE 597 (795)
T ss_dssp CCHHHHHHHHHHHHTTTCTTEECCTTCSSEEEEECSSCEEEEECTTHHHHHHCCCCHHHHHHHHTCSSCSHHHHTTC---
T ss_pred CChHHHHHHHHHHhhccCCccccCCCCCCceEEEecceEEEEechhHHhhccccccHHHHHHHHhccccHHHHHHhcccc
Confidence 99999999999987 9999998876 5799999999999999999999999999999999999999 9865 5786433
Q ss_pred cccC-C--C---------CccCCCc--cCCCCCCCCccHHHHHHHHHHHHHHHHhccCCeeeeecCCCCCCCCCccchhH
Q 003826 316 LSQS-N--K---------PVVGPLY--KAGGADSQKLSVATKFKGQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGL 381 (793)
Q Consensus 316 ~~~~-~--~---------~~~~~~~--~~~~~~~~~~tv~~~f~~~L~~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~~ 381 (793)
...+ . . ....+.+ ..++...+++||+++|+.||+.||++|.+|+||||||||||+.+.|+.||..+
T Consensus 598 ~~~~~~~~~~s~~~~~s~~~~~~~~~~~~~~~~~~~~Tv~~~fk~sL~~Lm~~L~~t~phfVRCIkPN~~k~p~~fd~~~ 677 (795)
T 1w7j_A 598 KAISPTSATPSGRVPLSRTPVKPAKARPGQTSKEHKKTVGHQFRNSLHLLMETLNATTPHYVRCIKPNDFKFPFTFDEKR 677 (795)
T ss_dssp ------------------------------------CCHHHHHHHHHHHHHHHHHTSEEEEEEEECCCTTCCTTCCCHHH
T ss_pred ccccccccccccccccccccccccccccccccCCCCCcHHHHHHHHHHHHHHHHhcCCCeEEEEeCCCCcCChhhcCccc
Confidence 1100 0 0 0000000 00122345789999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhChhHHHHHHhcCCCCccChHHHHHHhhccccccCCCCChHHHHHHHHHHcCCCCcceeecceeeeeeecccc
Q 003826 382 VLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFLLLESVASQDPLSVSVAILHQFNILPEMYQVGYTKLFFRAGQIG 461 (793)
Q Consensus 382 V~~QLr~~gvle~vri~r~Gyp~r~~~~~F~~RY~~L~~~~~~~~d~~~~~~~il~~~~~~~~~~~vGkTkVFlr~~~~~ 461 (793)
|++||||+||||+|||+|+|||+|++|.+|+.||++|+|...+..|+++.|+.||..+++++++|++|+||||||.+++.
T Consensus 678 V~~QLr~~GvlE~iri~r~Gyp~R~~f~eF~~RY~~L~~~~~~~~d~k~~~~~il~~~~~~~~~~~~G~TKVF~r~~~~~ 757 (795)
T 1w7j_A 678 AVQQLRACGVLETIRISAAGFPSRWTYQEFFSRYRVLMKQKDVLSDRKQTCKNVLEKLILDKDKYQFGKTKIFFRAGQVA 757 (795)
T ss_dssp HHHHHHHTTHHHHHHHHHHSCCEEEEHHHHHHHHGGGSCGGGCCSCHHHHHHHHHHHHCCCGGGEEECSSEEEECTTHHH
T ss_pred ccchhhhCChHHHHHHHHcCCCccccHHHHHHHHHHhCCcccCCCCHHHHHHHHHHHhCCCccceEEcCceEEEchhHHH
Confidence 99999999999999999999999999999999999999987665599999999999999999999999999999999999
Q ss_pred cccccccccch-hhHhhhhhhcccccchhhcccccc
Q 003826 462 MLEDTRNRTLH-GILRVQSCFRGHQARLCLKELRRG 496 (793)
Q Consensus 462 ~LE~~R~~~l~-aa~~IQ~~~Rg~~~R~~~~~~r~a 496 (793)
.||++|...+. +++.||++||||++|++|++++.+
T Consensus 758 ~LE~~r~~~l~~~~~~iQ~~~Rg~l~R~~~~~~r~a 793 (795)
T 1w7j_A 758 YLEKIRADKLRAACIRIQKTIRGWLMRKKYMRMRRG 793 (795)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999887664 455666666666666666665554
No 5
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=100.00 E-value=9.1e-123 Score=1121.98 Aligned_cols=540 Identities=30% Similarity=0.494 Sum_probs=461.2
Q ss_pred CCccCccccCC--------------------------CccccCCcccHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 003826 2 SAKEYKYLRQS--------------------------SCYSINGVDDAEQFRIVVEALDIVHVSKEDQESVFAMLAAVLW 55 (793)
Q Consensus 2 ~~~~y~yL~~s--------------------------~~~~~~~~dD~~~f~~~~~Al~~lg~~~~~~~~if~ilaaILh 55 (793)
+|++|+||++| +|..++++||+++|..|+.||++|||+++++..||+|||||||
T Consensus 267 ~~~~y~yL~qg~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~dD~~~f~~~~~Am~~lGfs~~e~~~I~~iLAaILh 346 (1052)
T 4anj_A 267 SPDNFRYLNRGCTRYFANKETDKQILQNRKSPEYLKAGSLKDPLLDDHGDFIRMCTAMKKIGLDDEEKLDLFRVVAGVLH 346 (1052)
T ss_dssp CGGGCHHHHTSCCCCBCCHHHHTTSCGGGCCHHHHHHCCBCCSSCCHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred ChHhCchhcCCCccccccccchhhhcccccchhhccCCCccCCCcchHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Confidence 58899999985 4778999999999999999999999999999999999999999
Q ss_pred hcCeeEEeeCCC---CceeecCchHHHHHHHHhCCCHHHHHHHHccceee-----ecCceEEecCCHHHHHHHHHHHHHH
Q 003826 56 LGNVSFTVIDNE---NHVEPVADEGLITVAKLIGCDIGELKLALSTRKMR-----VGNDTIVQNLTLSQATDTRDALAKS 127 (793)
Q Consensus 56 LGNi~F~~~~~~---~~~~~~~~~~l~~~a~LLGv~~~~L~~~L~~~~i~-----~~~e~i~~~lt~~qA~~~RdaLak~ 127 (793)
||||+|.+.++. ..+.+.+.+.++.+|.||||++++|..+||++++. ++||.++++++++||.++||||||+
T Consensus 347 LGNi~F~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~aLt~r~~~~~~~~~~~e~i~~~l~~~qA~~~rDaLAK~ 426 (1052)
T 4anj_A 347 LGNIDFEEAGSTSGGCNLKNKSTQALEYCAELLGLDQDDLRVSLTTRVMLTTAGGAKGTVIKVPLKVEQANNARDALAKT 426 (1052)
T ss_dssp HHTCCEEC-------CEECGGGHHHHHHHHHHTTCCHHHHHHHHHEEC-------------CEECCHHHHHHHHHHHHHH
T ss_pred hcceeEEecCCCCCCcccccCChHHHHHHHHHhCCCHHHHHHHHhhceeeecccccCceEEEecCCHHHHHHHHHHHHHH
Confidence 999999865432 23445667889999999999999999999998874 6899999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhccCCCCCcceeEEeecCCCccCCCCChhHHHHHHhhHHHHHHHHHHhhHHHHHHHhhcCCccc
Q 003826 128 IYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWA 207 (793)
Q Consensus 128 LY~~LF~wiV~~IN~~L~~~~~~~~~~IgILDI~GFE~f~~NsfEQlcINyaNErLq~~f~~~~f~~eqeey~~EgI~~~ 207 (793)
||++||+|||++||.+|... ....+||||||||||+|+.|||||||||||||+|||+||+|+|+.||+||.+|||+|+
T Consensus 427 LY~rLF~wiV~~IN~~l~~~--~~~~~IGILDI~GFE~f~~NsFEQLCINyaNEkLQq~Fn~~vF~~EqeeY~~EgI~w~ 504 (1052)
T 4anj_A 427 VYSHLFDHVVNRVNQCFPFE--TSSYFIGVLDIAGFEYFEHNSFEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVN 504 (1052)
T ss_dssp HHHHHHHHHHHHHHTTSCCS--CCSEEEEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHhhhcccccc--cccceEEEEecCCCcccccCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCcc
Confidence 99999999999999999764 3467999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCchhHHHhhhcCCCccccccccccCCCCCCcHHHHHHHHHHcCCCCccccCC------------CCCcEEEecCc
Q 003826 208 KVDFEDNKDCLNLFEKKPLGLLSLLDEESTFPNGTDLTFANKLKQHLNSNPCFRGER------------DKSFTVSHYAG 275 (793)
Q Consensus 208 ~i~f~dN~~~ldlie~kp~Gil~lLdee~~~p~~tD~~f~~kl~~~~~~~~~~~~~~------------~~~F~I~HyaG 275 (793)
.|+|.||++|||||+++|.|||+||||||++|++||.+|++||++.+++|++|..++ +..|+|+||||
T Consensus 505 ~I~f~DN~~~idLie~kp~GIl~lLDEe~~~p~~tD~~f~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~I~HyAG 584 (1052)
T 4anj_A 505 EVHYVDNQDCIDLIEARLVGILDILDEENRLPQPSDQHFTSAVHQKHKDHFRLSIPRKSKLAIHRNIRDDEGFIIRHFAG 584 (1052)
T ss_dssp CCCCCCCHHHHHHHHCTTTSHHHHHHHHHHSSSCCHHHHHHHHHHTTTTCTTEECGGGCSCSTTTTCCTTSEEEEEETTE
T ss_pred cCCcCCcHHHHHHHHcCcccHHHHHHHHhcCCCCcHHHHHHHHHHHhccCccccCCcccccccccccCCCCCeEEEcCCc
Confidence 999999999999999999999999999999999999999999999999999886542 24699999999
Q ss_pred cccccccchhhhccccccHHHHHHHhhcCCchH-HHhhhcccccCCCCccCCCccCCCCCCCCccHHHHHHHHHHHHHHH
Q 003826 276 EVIYDTTGFLEKNRDLLHLDSIELLSSCSCHLP-QIFASNMLSQSNKPVVGPLYKAGGADSQKLSVATKFKGQLFQLMQR 354 (793)
Q Consensus 276 ~V~Y~~~gfleKN~D~l~~~~~~ll~~S~~~~~-~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~f~~~L~~Lm~~ 354 (793)
+|+|+++|||+||+|+|++++++||++|+++++ .+|.+........ +.+......+||+++|+.||+.||++
T Consensus 585 ~V~Y~~~gfleKNrD~l~~~~~~ll~~S~~~~i~~Lf~~~~~~~~~~-------~~~~~~~~~~Tv~~~fk~sL~~Lm~~ 657 (1052)
T 4anj_A 585 AVCYETTQFVEKNNDALHMSLESLICESRDKFIRELFESSTNNNKDT-------KQKAGKLSFISVGNKFKTQLNLLLDK 657 (1052)
T ss_dssp EEEEECTTHHHHHBCCCCHHHHHHHHTCSCHHHHHTTCC-----------------------CCBHHHHHHHHHHHHHHH
T ss_pred cEEEecCChhhhccccccHHHHHHHHhCCcHHHHHhhhccccccccc-------cCCCCCCCCccHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999965 6786433211110 01111234689999999999999999
Q ss_pred HhccCCeeeeecCCCCCCCCCccchhHHHHHhhhhChhHHHHHHhcCCCCccChHHHHHHhhccccccCCCCChHHHHHH
Q 003826 355 LESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFLLLESVASQDPLSVSVA 434 (793)
Q Consensus 355 L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~~F~~RY~~L~~~~~~~~d~~~~~~~ 434 (793)
|.+|+||||||||||+.+.|+.||..+|++||||+||||+|||+|+|||+|++|.+|+.||++|+|...+..|+++.|+.
T Consensus 658 L~~t~phfVRCIkPN~~k~p~~fd~~~V~~QLr~~GvLE~irI~r~Gyp~R~~f~eF~~RY~~L~~~~~~~~d~k~~~~~ 737 (1052)
T 4anj_A 658 LRSTGASFIRCIKPNLKMTSHHFEGAQILSQLQCSGMVSVLDLMQGGFPSRASFHELYNMYKKYMPDKLARLDPRLFCKA 737 (1052)
T ss_dssp HHTSEEEEEEEECCCSSCCSSCCCHHHHHHHHHHHTHHHHHHHTTTCCCEEEEHHHHHHHHHTTSCSSGGGSCHHHHHHH
T ss_pred HcCcCCEEEEEECCCccCCCCcCCHHHHHHHHHHhhHHHHHHHHhcCCCCcCcHHHHHHHHHHhCcccccCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999988888899999999
Q ss_pred HHHHcCCCCcceeecceeeeeeecccccccccccccchhhHhhhhhhcccccchhhcccccchhhhhhHHHHHHHHHHHH
Q 003826 435 ILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTRNRTLHGILRVQSCFRGHQARLCLKELRRGIVALQSFIRGEKIRKEYA 514 (793)
Q Consensus 435 il~~~~~~~~~~~vGkTkVFlr~~~~~~LE~~R~~~l~aa~~IQ~~~Rg~~~R~~~~~~r~a~i~IQs~~Rg~~aRr~~~ 514 (793)
||+.+++++++|++|+||||||.+++..||++|...+..++.+|..+|||++|++|++++.+++.||..+|++..|+.+.
T Consensus 738 iL~~l~l~~~~y~iG~TKVFlr~~~~~~LE~~r~~~~~~~~~~iq~~r~~l~r~~~~k~~~~a~~i~~~~r~~~~r~~~~ 817 (1052)
T 4anj_A 738 LFKALGLNEIDYKFGLTKVFFRPGKFAEFDQIMKSDPDHLAELVKRVNHWLICSRWKKVQWCSLSVIKLKNKIKYRAEAV 817 (1052)
T ss_dssp HHHHTSCCGGGEEECSSEEEECTTCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCcCcccEEecCCEEeeCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 99999999999999999999999999999999999887766555568999999999999999999999988887665442
Q ss_pred HHHh-HHHHHHHHHHHhhhHHHHHHHHhhhhHHHHHHH
Q 003826 515 LVLQ-RHRAAVVIQRQIKSRVARQKLKNIKYSSIMIQS 551 (793)
Q Consensus 515 ~l~~-~~~AAi~IQ~~~R~~~~R~~~~~~r~aai~IQs 551 (793)
-... ...++.-+++.||++..|++|...+ +...||.
T Consensus 818 ~~w~~l~~~v~pll~~~~~~~~~r~~~~~~-~~~~~~~ 854 (1052)
T 4anj_A 818 SKGEELFTGVVPILVELDGDVNGHKFSVSG-EGEGDAT 854 (1052)
T ss_dssp HHHHHTTSSCEEEEEEEEEEETTEEEEEEE-EEEEETT
T ss_pred hHHHHHHHhhhhhHHHHHHHHHhhhhhccC-Cccccch
Confidence 1110 1112333445556666666664433 3334443
No 6
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=100.00 E-value=2.3e-120 Score=1108.17 Aligned_cols=528 Identities=34% Similarity=0.555 Sum_probs=471.9
Q ss_pred CCccCccccCCCccccCCcccHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhcCeeEEeeCCCCceeecCchHHHHH
Q 003826 2 SAKEYKYLRQSSCYSINGVDDAEQFRIVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNENHVEPVADEGLITV 81 (793)
Q Consensus 2 ~~~~y~yL~~s~~~~~~~~dD~~~f~~~~~Al~~lg~~~~~~~~if~ilaaILhLGNi~F~~~~~~~~~~~~~~~~l~~~ 81 (793)
+|++|+||++|+ ..+++ ||+++|..|+.||++|||+++++..||+|||||||||||+|...++++.+.+.+.+.++.+
T Consensus 278 ~~~~y~yl~~~~-~~~~~-dD~~~f~~~~~A~~~lg~~~~e~~~i~~ilaaILhlGni~F~~~~~~~~~~~~~~~~l~~~ 355 (995)
T 2ycu_A 278 PCSHYRFLTNGP-SSSPG-QERELFQETLESLRVLGFSHEEIISMLRMVSAVLQFGNIALKRERNTDQATMPDNTAAQKL 355 (995)
T ss_dssp CGGGCTTSTTCS-CSSTT-THHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHGGGCCCEECSSSCCEECSCCHHHHHH
T ss_pred ChHHcccccCCc-cccCC-cHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhccceEeecCCCcccccCChHHHHHH
Confidence 688999999976 68899 9999999999999999999999999999999999999999998776677888999999999
Q ss_pred HHHhCCCHHHHHHHHccceeeecCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCcceeEEeecC
Q 003826 82 AKLIGCDIGELKLALSTRKMRVGNDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIY 161 (793)
Q Consensus 82 a~LLGv~~~~L~~~L~~~~i~~~~e~i~~~lt~~qA~~~RdaLak~LY~~LF~wiV~~IN~~L~~~~~~~~~~IgILDI~ 161 (793)
|.||||++++|.++||++++.+|+|.|++++|++||.++||||||+||++||+|||.+||.+|.........+|||||||
T Consensus 356 a~LLgv~~~~L~~~l~~~~~~~~~e~v~~~~~~~qa~~~rdalak~lY~~LF~wlV~~iN~~l~~~~~~~~~~IgvLDI~ 435 (995)
T 2ycu_A 356 CRLLGLGVTDFSRALLTPRIKVGRDYVQKAQTKEQADFALEALAKATYERLFRWLVLRLNRALDRSPRQGASFLGILDIA 435 (995)
T ss_dssp HHHTTCCHHHHHHHHHSCEEESSSSEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSCCCSEEEEEEECC
T ss_pred HHHHCCCHHHHHHHhcCcEEEcCCceecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccceEEEeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999986443256899999999
Q ss_pred CCccCCCCChhHHHHHHhhHHHHHHHHHHhhHHHHHHHhhcCCccccccc-CCchhHHHhhhc--CCCccccccccccCC
Q 003826 162 GFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDF-EDNKDCLNLFEK--KPLGLLSLLDEESTF 238 (793)
Q Consensus 162 GFE~f~~NsfEQlcINyaNErLq~~f~~~~f~~eqeey~~EgI~~~~i~f-~dN~~~ldlie~--kp~Gil~lLdee~~~ 238 (793)
|||+|+.|||||||||||||+|||+||+|+|+.||+||.+|||+|+.|+| .||++|||||++ +|.|||+||||||++
T Consensus 436 GFE~f~~NsfEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~~dn~~~idlie~~~~p~Gil~lLdee~~~ 515 (995)
T 2ycu_A 436 GFEIFQLNSFEQLCINYTNEKLQQLFNHTMFVLEQEEYQREGIPWTFLDFGLDLQPCIDLIERPANPPGLLALLDEECWF 515 (995)
T ss_dssp CBCCCSSBCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCCCCCCSCCCHHHHHHHHCCSSSCCHHHHHHHSSSS
T ss_pred cccccccchHHHHHHHhhHHHHHHHHHHhhhHHHHHHHhccCCCccccccccChHHHHHHHhccCCCCchhhhhHHHhcC
Confidence 99999999999999999999999999999999999999999999999999 599999999998 499999999999999
Q ss_pred CCCCcHHHHHHHHHHcCCCCccccCC----CCCcEEEecCccccccccchhhhccccccHHHHHHHhhcCCchH-HHhhh
Q 003826 239 PNGTDLTFANKLKQHLNSNPCFRGER----DKSFTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCSCHLP-QIFAS 313 (793)
Q Consensus 239 p~~tD~~f~~kl~~~~~~~~~~~~~~----~~~F~I~HyaG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~~~~~-~lf~~ 313 (793)
|++||.+|++||...+++||+|..++ ...|+|+||||+|.|++.||++||+|+|+++++.||++|+++++ .+|+.
T Consensus 516 p~~tD~~f~~kl~~~~~~~~~f~~~~~~~~~~~F~i~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~~~~v~~lf~~ 595 (995)
T 2ycu_A 516 PKATDKSFVEKVAQEQGGHPKFQRPRHLRDQADFSVLHYAGKVDYKANEWLMKNMDPLNDNVAALLHQSTDRLTAEIWKD 595 (995)
T ss_dssp TTCCHHHHHHHHHHHHTTSTTEECCCTTTCCSSEEEEETTEEEEECCTTHHHHHHCCCCHHHHHHHHTCSSHHHHHHTSS
T ss_pred CCCchHHHHHHHHHhcCCCCCcccCCccCCCCeeEEECCCCCccccccchhhhccccccHHHHHHHHhCcHHHHHHHhhc
Confidence 99999999999999889999998765 46999999999999999999999999999999999999999975 58865
Q ss_pred cccccCCCCccC--CCc-cCCCCCCCCccHHHHHHHHHHHHHHHHhccCCeeeeecCCCCCCCCCccchhHHHHHhhhhC
Q 003826 314 NMLSQSNKPVVG--PLY-KAGGADSQKLSVATKFKGQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCG 390 (793)
Q Consensus 314 ~~~~~~~~~~~~--~~~-~~~~~~~~~~tv~~~f~~~L~~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~g 390 (793)
.....+.....+ +.. .........+||+++|+.||+.||++|.+|+||||||||||+.+.|+.||..+|++||||+|
T Consensus 596 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~tv~~~fk~sL~~Lm~~L~~t~phfVRCIkPN~~k~p~~fd~~~V~~QLr~~G 675 (995)
T 2ycu_A 596 VEGIVGLEQVSSLGDGPPGGRPRRGMFRTVGQLYKESLSRLMATLSNTNPSFVRCIVPNHEKRAGKLEPRLVLDQLRCNG 675 (995)
T ss_dssp CCSSCSCCC-------------CCCSSCCHHHHHHHHHHHHHHHHHTSEEEEEEEECCCSSCCTTCCCTTTHHHHHHHHT
T ss_pred ccccccccccccccccccccCcCCCCCCchHHHHHHHHHHHHHHHHhcCcceeeeecCCccccccccCHHHHHHHhcccc
Confidence 331111000000 000 00111235689999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhcCCCCccChHHHHHHhhccccccCCC--CChHHHHHHHHHHcCCCCcceeecceeeeeeeccccccccccc
Q 003826 391 VLEVVRISRSGFPTRMSHQKFARRYGFLLLESVAS--QDPLSVSVAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTRN 468 (793)
Q Consensus 391 vle~vri~r~Gyp~r~~~~~F~~RY~~L~~~~~~~--~d~~~~~~~il~~~~~~~~~~~vGkTkVFlr~~~~~~LE~~R~ 468 (793)
|||+|||+|+|||+|++|.+|+.||++|.|..++. .|+++.|+.+|..+++++++|++|+||||||.+++..||++|.
T Consensus 676 vlE~iri~r~Gfp~r~~~~~F~~RY~~L~~~~~~~~~~d~~~~~~~ll~~~~~~~~~~~~G~tkVF~r~~~~~~LE~~R~ 755 (995)
T 2ycu_A 676 VLEGIRICRQGFPNRILFQEFRQRYEILTPNAIPKGFMDGKQACEKMIQALELDPNLYRVGQSKIFFRAGVLAQLEEERA 755 (995)
T ss_dssp HHHHHHHHHHSCCEEEEHHHHHHHHGGGSTTTSCSCCCCSCCSCCCSCCCSSEEESSEEEESSCTTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhcCCccccHHHHHHHHHHhCcccccccCCCHHHHHHHHHHHcCCChhheeecceEEEEecchhhhHHHHHH
Confidence 99999999999999999999999999999987764 3888899999999999999999999999999999999999998
Q ss_pred ccchh------hHhhhhhhcccccchhhcccccchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhhh
Q 003826 469 RTLHG------ILRVQSCFRGHQARLCLKELRRGIVALQSFIRGEKIRKEYALVLQRHRAAVVIQRQIKS 532 (793)
Q Consensus 469 ~~l~a------a~~IQ~~~Rg~~~R~~~~~~r~a~i~IQs~~Rg~~aRr~~~~l~~~~~AAi~IQ~~~R~ 532 (793)
..+.. +..++.|+|+..++..++..+.+++.||++||++..++...+... ......||..++.
T Consensus 756 ~~l~~~eYe~~a~~Ll~WIr~k~a~l~~r~~~~sl~~IQ~~ir~f~~fr~~ekpp~-~~ek~rLeal~~~ 824 (995)
T 2ycu_A 756 SEQTKSDYLKRANELVQWINDKQASLESRDFGDSIESVQSFMNAHKEYKKTEKPPK-GQEVSELEAIYNS 824 (995)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTTCCCSCHHHHHHHHHHHHHHHHHTTHHHHTHHHH-HHHHHHHCSSSCC
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccch-HHHHHHHHHHHHH
Confidence 88753 446788999999999999999999999999999988877654331 1234566766663
No 7
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=100.00 E-value=3.1e-119 Score=1096.46 Aligned_cols=500 Identities=38% Similarity=0.660 Sum_probs=449.4
Q ss_pred CCccCccccCCCccccCCcccHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhcCeeEEeeCCCCceeecCchHHHHH
Q 003826 2 SAKEYKYLRQSSCYSINGVDDAEQFRIVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNENHVEPVADEGLITV 81 (793)
Q Consensus 2 ~~~~y~yL~~s~~~~~~~~dD~~~f~~~~~Al~~lg~~~~~~~~if~ilaaILhLGNi~F~~~~~~~~~~~~~~~~l~~~ 81 (793)
+|++|+||++|+|+.++++||+++|..|+.||++|||+++++..||+|||||||||||+|...++ +.+.+.+.+.++.+
T Consensus 300 ~~~~y~yl~~~~~~~~~~~dD~~~f~~~~~A~~~lg~~~~e~~~i~~ilaaILhLGni~F~~~~~-~~~~~~~~~~l~~~ 378 (1010)
T 1g8x_A 300 GPESFNYLNQSGCVDIKGVSDEDEFKITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKGAG-EGAVLKDKTALNAA 378 (1010)
T ss_dssp CGGGCGGGSSSSCCCCBTCCHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTCCCBCCTT-SSCBCSCCHHHHHH
T ss_pred ChHhcchhcCCCccccCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhccceEEecCC-CccccCChHHHHHH
Confidence 58899999999999999999999999999999999999999999999999999999999987655 67788899999999
Q ss_pred HHHhCCCHHHHHHHHccceeeecCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCcceeEEeecC
Q 003826 82 AKLIGCDIGELKLALSTRKMRVGNDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIY 161 (793)
Q Consensus 82 a~LLGv~~~~L~~~L~~~~i~~~~e~i~~~lt~~qA~~~RdaLak~LY~~LF~wiV~~IN~~L~~~~~~~~~~IgILDI~ 161 (793)
|.||||++++|.++||++++.+|+|.|++++|++||.++||||||+||++||+|||.+||.+|.+.. ...+|||||||
T Consensus 379 a~LLgv~~~~L~~~l~~~~~~~~~e~v~~~~~~~qa~~~rdalak~lY~~LF~wlV~~IN~~l~~~~--~~~~IgvLDI~ 456 (1010)
T 1g8x_A 379 STVFGVNPSVLEKALMEPRILAGRDLVAQHLNVEKSSSSRDALVKALYGRLFLWLVKKINNVLCSER--KAYFIGVLDIS 456 (1010)
T ss_dssp HHHHTSCHHHHHHHHHSCEEESSSSEEECCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSS--CSEEEEEEECC
T ss_pred HHHHCCCHHHHHHHHhCcEEEeCCeeEEeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--cCceeeeccCc
Confidence 9999999999999999999999999999999999999999999999999999999999999998643 56799999999
Q ss_pred CCccCCCCChhHHHHHHhhHHHHHHHHHHhhHHHHHHHhhcCCcccccccC-CchhHHHhhhc-CCCccccccccccCCC
Q 003826 162 GFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFE-DNKDCLNLFEK-KPLGLLSLLDEESTFP 239 (793)
Q Consensus 162 GFE~f~~NsfEQlcINyaNErLq~~f~~~~f~~eqeey~~EgI~~~~i~f~-dN~~~ldlie~-kp~Gil~lLdee~~~p 239 (793)
|||+|+.|||||||||||||+|||+||+|+|+.||+||.+|||+|+.|+|. ||++|||||++ +|.|||+||||||++|
T Consensus 457 GFE~f~~NsfEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~~dn~~~idlie~~~~~Gil~lLdee~~~p 536 (1010)
T 1g8x_A 457 GFEIFKVNSFEQLCINYTNEKLQQFFNHHMFKVEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPGILALLDEQSVFP 536 (1010)
T ss_dssp CCCCCSSBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCCCCCSHHHHHHHHCTTTTCHHHHHHHHTTSS
T ss_pred ccccCCcCcHHHHHHHhhhHHHHHHHHHHhhHHHHHHhhccCCCccccccccChHHHHHHHhcCCCCeeehhhhHHhCCC
Confidence 999999999999999999999999999999999999999999999999995 99999999998 5999999999999999
Q ss_pred CCCcHHHHHHHHHHcC-CCCccccCCC--CCcEEEecCccccccccchhhhccccccHHHHHHHhhcCCchH-HHhhhcc
Q 003826 240 NGTDLTFANKLKQHLN-SNPCFRGERD--KSFTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCSCHLP-QIFASNM 315 (793)
Q Consensus 240 ~~tD~~f~~kl~~~~~-~~~~~~~~~~--~~F~I~HyaG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~~~~~-~lf~~~~ 315 (793)
++||.+|++|+.++++ +||+|..++. ..|+|+||||+|.|++.||++||+|+|++++++||.+|+++++ .+|+...
T Consensus 537 ~~td~~f~~kl~~~~~~~~~~f~~~~~~~~~F~i~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~~~~~~~lf~~~~ 616 (1010)
T 1g8x_A 537 NATDNTLITKLHSHFSKKNAKYEEPRFSKTEFGVTHYAGQVMYEIQDWLEKNKDPLQQDLELCFKDSSDNVVTKLFNDPN 616 (1010)
T ss_dssp SCCHHHHHHHHHHHHTTTCTTEECCTTCSSEEEEEETTEEEEEECTTHHHHHHCCCCHHHHHHHTTCSCHHHHHHHHCHH
T ss_pred CCChHHHHHHHHHHhcCCCCCcccCCCCCCCEEEeeeceEEEEeecCccccccccccHHHHHHHHhCcHHHHHHHhcccc
Confidence 9999999999999999 9999987753 6999999999999999999999999999999999999999865 6886532
Q ss_pred cccCCCCccCCCccCCCCCCCCccHHHHHHHHHHHHHHHHhccCCeeeeecCCCCCCCCCccchhHHHHHhhhhChhHHH
Q 003826 316 LSQSNKPVVGPLYKAGGADSQKLSVATKFKGQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVV 395 (793)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~tv~~~f~~~L~~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~v 395 (793)
. +++ ++.....+||+++|+.||+.||++|.+|+||||||||||+.+.|+.||..+|++||||+||||+|
T Consensus 617 ~--~~~---------~~k~~~~~tv~~~fk~sL~~Lm~~L~~t~phfVRCIkPN~~k~p~~fd~~~V~~QLr~~GvlE~i 685 (1010)
T 1g8x_A 617 I--ASR---------AKKGANFITVAAQYKEQLASLMATLETTNPHFVRCIIPNNKQLPAKLEDKVVLDQLRCNGVLEGI 685 (1010)
T ss_dssp H--HSC---------CCCSSSCCCHHHHHHHHHHHHHHHHTTSEEEEEEEECSCSSCCTTCCCHHHHHHHHHHSSHHHHH
T ss_pred c--ccC---------CCCCCCCCchHHHHHHHHHHHHHHHHhcCCeeeeeecCCcccccCCcChhhcchhcccCccHHHH
Confidence 0 000 01122458999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCccChHHHHHHhhccccccCCC--CChHHHHHHHHHHcCCCCcceeecceeeeeeecccccccccccccchh
Q 003826 396 RISRSGFPTRMSHQKFARRYGFLLLESVAS--QDPLSVSVAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTRNRTLHG 473 (793)
Q Consensus 396 ri~r~Gyp~r~~~~~F~~RY~~L~~~~~~~--~d~~~~~~~il~~~~~~~~~~~vGkTkVFlr~~~~~~LE~~R~~~l~a 473 (793)
||+|+|||+|++|.+|+.||++|.|. ++. .|+++.|+.+|..+++++++|++|+||||||.+++..||++|...+..
T Consensus 686 ri~r~Gfp~r~~~~~F~~RY~~L~~~-~~~~~~d~~~~~~~ll~~~~~~~~~~~~G~tkVF~r~~~l~~LE~~R~~~l~~ 764 (1010)
T 1g8x_A 686 RITRKGFPNRIIYADFVKRYYLLAPN-VPRDAEDSQKATDAVLKHLNIDPEQYRFGITKIFFRAGQLARIEEAREQRLGS 764 (1010)
T ss_dssp HHHTTSCCEEEEHHHHHHHHGGGSTT-CCTTCSCHHHHHHHHHHHTTCCGGGEEECSSEEEECTTHHHHHHHHHHHHHHH
T ss_pred HHHHhCCcccccHHHHHHHHHHhCCC-CCcCCCCHHHHHHHHHHHcCCCccceeehhhhhhhcccchhHHHHHHHHHHHH
Confidence 99999999999999999999999987 553 489999999999999999999999999999999999999999988865
Q ss_pred hH-hhhhhhcccccchhhcccccchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhH
Q 003826 474 IL-RVQSCFRGHQARLCLKELRRGIVALQSFIRGEKIRKEYALVLQRHRAAVVIQRQIKSR 533 (793)
Q Consensus 474 a~-~IQ~~~Rg~~~R~~~~~~r~a~i~IQs~~Rg~~aRr~~~~l~~~~~AAi~IQ~~~R~~ 533 (793)
++ .||-..+ +..++.|+|+..++..... ...+...||+.++.+
T Consensus 765 ~~~~iQY~~~--------------a~~L~~WIr~kqa~l~~r~---~~~sl~~IQ~ll~~f 808 (1010)
T 1g8x_A 765 EQTKSDYLKR--------------ANELVQWINDKQASLESRD---FGDSIESVQSFMNAH 808 (1010)
T ss_dssp HHHHHHHHHH--------------HHHHHHHHHHHHHHHHCCC---CCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHH--------------HHHHHHHHHHHHHHHHhhh---ccccHHHHHHHHHHH
Confidence 54 5553222 2334556666665433211 113566777776654
No 8
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=100.00 E-value=2.7e-120 Score=1064.73 Aligned_cols=455 Identities=36% Similarity=0.633 Sum_probs=408.7
Q ss_pred CCccCccccCCCccccCCcccHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhcCeeEEee----CCCCceeecCchH
Q 003826 2 SAKEYKYLRQSSCYSINGVDDAEQFRIVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVI----DNENHVEPVADEG 77 (793)
Q Consensus 2 ~~~~y~yL~~s~~~~~~~~dD~~~f~~~~~Al~~lg~~~~~~~~if~ilaaILhLGNi~F~~~----~~~~~~~~~~~~~ 77 (793)
+|++|+||++|+|+.++++||+++|+.|+.||++|||+++++..||+|||||||||||+|... ++.+.+.+.+.+.
T Consensus 222 ~~~~y~yL~~~~~~~~~~~dD~~~f~~~~~Am~~lG~~~~e~~~i~~ilaaILhLGNi~F~~~~~~~~~~~~~~v~~~~~ 301 (697)
T 1lkx_A 222 NAPAYEYLKKSGCFDVSTIDDSGEFKIIVKAMETLGLKESDQNSIWRILAAILHIGNITFAEAAEQRTGTTTVKVSDTKS 301 (697)
T ss_dssp CGGGSHHHHHTTCCCCTTCCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCCEEEETTC----CEEEESSHHH
T ss_pred ChhhCccccCCCCcccCCCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccceEeecccccCCCCcceeCCHHH
Confidence 689999999999999999999999999999999999999999999999999999999999872 2225788999999
Q ss_pred HHHHHHHhCCCHHHHHHHHccceeeec----CceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCcc
Q 003826 78 LITVAKLIGCDIGELKLALSTRKMRVG----NDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGR 153 (793)
Q Consensus 78 l~~~a~LLGv~~~~L~~~L~~~~i~~~----~e~i~~~lt~~qA~~~RdaLak~LY~~LF~wiV~~IN~~L~~~~~~~~~ 153 (793)
++.+|.||||++++|.++||++++.++ +|.+++++|++||.++||||||+||++||+|||.+||.+|.+.. ....
T Consensus 302 l~~~a~LLgv~~~~L~~~L~~r~~~~~~g~~~e~i~~~l~~~qA~~~rdalaK~lY~rLF~wlV~~IN~~l~~~~-~~~~ 380 (697)
T 1lkx_A 302 LAAAASCLKTDQQSLSIALCYRSISTGVGKRCSVISVPMDCNQAAYSRDALAKALYERLFNWLVSKINTIINCTT-EKGP 380 (697)
T ss_dssp HHHHHHHHTSCHHHHHHHHHBCC----------CCCCBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCS-CCCC
T ss_pred HHHHHHhhCCCHHHHHHHHhccEEeeccCCCCCeEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC-CCce
Confidence 999999999999999999999999999 99999999999999999999999999999999999999998643 3467
Q ss_pred eeEEeecCCCccCCCCChhHHHHHHhhHHHHHHHHHHhhHHHHHHHhhcCCcccccccCCchhHHHhhhcCCCccccccc
Q 003826 154 SISILDIYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEKKPLGLLSLLD 233 (793)
Q Consensus 154 ~IgILDI~GFE~f~~NsfEQlcINyaNErLq~~f~~~~f~~eqeey~~EgI~~~~i~f~dN~~~ldlie~kp~Gil~lLd 233 (793)
+||||||||||+|+.|||||||||||||+|||+||+|+|+.||+||.+|||+|++|+|.||++|||||+++|.|||+|||
T Consensus 381 ~IGvLDI~GFE~f~~NsFEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~dN~~~idLie~kp~GilslLD 460 (697)
T 1lkx_A 381 VIGILDIYGFEVFQNNSFEQLNINFCNEKLQQLFIELTLKSEQEEYVREGIEWKNIEYFNNKPICELIEKKPIGLISLLD 460 (697)
T ss_dssp EEEEEECCCCCCCSSBCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCCCCCCSCCCHHHHHTTSSSSSHHHHHH
T ss_pred eEEeeccccccccCcCCHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCcccccCCCCCHHHHHHHhcccCChhhhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCcHHHHHHHHHHcCCCCccccCC--------CCCcEEEecCccccccccchhhhccccccHHHHHHHhhcCC
Q 003826 234 EESTFPNGTDLTFANKLKQHLNSNPCFRGER--------DKSFTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCSC 305 (793)
Q Consensus 234 ee~~~p~~tD~~f~~kl~~~~~~~~~~~~~~--------~~~F~I~HyaG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~~ 305 (793)
|||++|++||.+|++||++++++||+|..++ ...|+|+||||+|.|++.||++||+|+|++++++||++|++
T Consensus 461 Eec~~p~~tD~~f~~kl~~~~~~~~~f~~~~~~~~k~~~~~~F~I~HyAG~V~Y~~~gfleKNkD~l~~~~~~ll~~S~~ 540 (697)
T 1lkx_A 461 EACLIAKSTDQTFLDSICKQFEKNPHLQSYVVSKDRSIGDTCFRLKHYAGDVTYDVRGFLDKNKDTLFGDLISSMQSSSD 540 (697)
T ss_dssp HHHHSTTCCHHHHHHHHHHHSSSSTTEECTTTSCCTTSCTTEEEEEETTEEEEEECTTHHHHHHCCCCHHHHHHHHTCCS
T ss_pred HhhCCCCCChHHHHHHHHHHhcCCCccccCCCCCCCccccCceeeeeeeeEEEEccCChhhhhcccccHHHHHHHhccch
Confidence 9999999999999999999999999997642 46899999999999999999999999999999999999999
Q ss_pred chH-HHhhhcccccCCCCccCCCccCCCCCCCCccHHHHHHHHHHHHHHHHhccCCeeeeecCCCCCCCCCccchhHHHH
Q 003826 306 HLP-QIFASNMLSQSNKPVVGPLYKAGGADSQKLSVATKFKGQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQ 384 (793)
Q Consensus 306 ~~~-~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~f~~~L~~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~ 384 (793)
+++ .+|+..... +...+.+||+++|+.||+.||++|.+|+||||||||||+.+.|+.||..+|++
T Consensus 541 ~~l~~lf~~~~~~--------------~~~~r~~Tv~~~fk~sL~~Lm~~L~~t~phfVRCIkPN~~k~p~~fd~~~V~~ 606 (697)
T 1lkx_A 541 PLVQGLFPPTRPE--------------DSKKRPETAGSQFRNAMNALITTLLACSPHYVRCIKSNDNKQAGVIDEDRVRH 606 (697)
T ss_dssp HHHHHHCC-------------------------CCHHHHHHHHHHHHHHHHTTSEEEEEEEECCCTTCCTTCCCHHHHHH
T ss_pred HHHHHhccccccc--------------cccCCCCcHHHHHHHHHHHHHHHHHccCCcceEeecCCCcCCCCCcChhhccc
Confidence 865 578643210 01123579999999999999999999999999999999999999999999999
Q ss_pred HhhhhChhHHHHHHhcCCCCccChHHHHHHhhccccccCCC--CChHHHHHHHHHHcCCCCcceeecceeeeeeec-ccc
Q 003826 385 QLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFLLLESVAS--QDPLSVSVAILHQFNILPEMYQVGYTKLFFRAG-QIG 461 (793)
Q Consensus 385 QLr~~gvle~vri~r~Gyp~r~~~~~F~~RY~~L~~~~~~~--~d~~~~~~~il~~~~~~~~~~~vGkTkVFlr~~-~~~ 461 (793)
||||+||+|+|||+|+|||+|++|.+|+.||++|.|..++. .|+++.|+.+|..+++++++|++|+||||||.+ .+.
T Consensus 607 QLr~~GvlE~iri~r~Gyp~R~~~~eF~~RY~~L~~~~~~~~~~~~k~~~~~ll~~~~~~~~~~~~G~TKVF~r~~~~l~ 686 (697)
T 1lkx_A 607 QVRYLGLLENVRVRRAGFAGRIEYTRFYNRYKMLCKKTWPSFNGTAKQATELILQQHNIDKEEIRMGKTKVFIRNPTTLF 686 (697)
T ss_dssp HHHHHTSHHHHHHHHHSCSBCCBSHHHHTTSCSSSCC---------CHHHHHHHHTTCCCGGGEEECSSBEEESSSHHHH
T ss_pred cCcccccHHHHHHHhcCCCccccHHHHHHHHHHhCcccccccCCCHHHHHHHHHHHcCCCcCcEEeCCeeEEEeCCchHH
Confidence 99999999999999999999999999999999999987664 478899999999999999999999999999996 789
Q ss_pred cccccccccc
Q 003826 462 MLEDTRNRTL 471 (793)
Q Consensus 462 ~LE~~R~~~l 471 (793)
.||++|...+
T Consensus 687 ~LE~~R~~~l 696 (697)
T 1lkx_A 687 YFEEKRELEM 696 (697)
T ss_dssp HHHTCC----
T ss_pred HHHHHHHhhC
Confidence 9999998754
No 9
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=100.00 E-value=1.1e-119 Score=1067.72 Aligned_cols=464 Identities=37% Similarity=0.664 Sum_probs=393.1
Q ss_pred CCccCccccCCCccccCCcccHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhcCeeEEeeCCCCceeecCchHHHHH
Q 003826 2 SAKEYKYLRQSSCYSINGVDDAEQFRIVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNENHVEPVADEGLITV 81 (793)
Q Consensus 2 ~~~~y~yL~~s~~~~~~~~dD~~~f~~~~~Al~~lg~~~~~~~~if~ilaaILhLGNi~F~~~~~~~~~~~~~~~~l~~~ 81 (793)
+|++|+||++| +..++++||+++|+.|+.||++|||+++++..||+|||||||||||+|...++++.+.+.+.+.++.+
T Consensus 306 ~~~~y~yl~~g-~~~~~~~dD~~~f~~~~~Am~~lGfs~~e~~~i~~ilaaILhLGNi~F~~~~~~~~~~~~~~~~l~~~ 384 (783)
T 4db1_A 306 NPYDYAFISQG-ETTVASIDDAEELMATDNAFDVLGFTSEEKNSMYKLTGAIMHFGNMKFKLKQREEQAEPDGTEEADKS 384 (783)
T ss_dssp CGGGCGGGCSS-CCCCTTCCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCCEEECTTSSCEEESCCHHHHHH
T ss_pred CHHHCccccCC-CcccCCCCcHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhccceeeccCCCcccccCChHHHHHH
Confidence 58899999996 57899999999999999999999999999999999999999999999998777778889999999999
Q ss_pred HHHhCCCHHHHHHHHccceeeecCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCcceeEEeecC
Q 003826 82 AKLIGCDIGELKLALSTRKMRVGNDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIY 161 (793)
Q Consensus 82 a~LLGv~~~~L~~~L~~~~i~~~~e~i~~~lt~~qA~~~RdaLak~LY~~LF~wiV~~IN~~L~~~~~~~~~~IgILDI~ 161 (793)
|.||||++++|.++||++++++|+|.+++++|++||.++||||||+||++||+|||.+||.+|.+. .....+|||||||
T Consensus 385 a~LLgv~~~~L~~aL~~~~i~~~~e~v~~~~~~~qA~~~rdalAK~lY~rLF~wlV~~IN~~l~~~-~~~~~~IGvLDI~ 463 (783)
T 4db1_A 385 AYLMGLNSADLLKGLCHPRVKVGNEYVTKGQNVQQVIYATGALAKAVYERMFNWMVTRINATLETK-QPRQYFIGVLDIA 463 (783)
T ss_dssp HHHTTCCHHHHHHHHHSCC------CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCS-CCCSEEEEEEECC
T ss_pred HHHhCCCHHHHHHhhcceEEEeCCeeEeeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCCceEEEeccc
Confidence 999999999999999999999999999999999999999999999999999999999999999864 3346799999999
Q ss_pred CCccCCCCChhHHHHHHhhHHHHHHHHHHhhHHHHHHHhhcCCcccccccC-CchhHHHhhhcCCCccccccccccCCCC
Q 003826 162 GFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFE-DNKDCLNLFEKKPLGLLSLLDEESTFPN 240 (793)
Q Consensus 162 GFE~f~~NsfEQlcINyaNErLq~~f~~~~f~~eqeey~~EgI~~~~i~f~-dN~~~ldlie~kp~Gil~lLdee~~~p~ 240 (793)
|||+|+.|||||||||||||+|||+||+|+|+.||+||.+|||+|+.|+|. ||++|||||++ |.|||+||||||++|+
T Consensus 464 GFE~f~~NsFEQlCINyaNEkLQq~Fn~~~F~~EqeeY~~EgI~w~~i~f~~Dn~~~idLiek-p~Gil~lLDEec~~p~ 542 (783)
T 4db1_A 464 GFEIFDFNSFEQLCINFTNEKLQQFFNHHMFVLEQEEYKKEGIEWTFIDFGMDLQACIDLIEK-PMGIMSILEEECMFPK 542 (783)
T ss_dssp CCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCGGGGGHHHHHHHHS-TTSHHHHHCC-TTCTT
T ss_pred cccccccCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCcccccccCChHHHHHHHhC-CCchHhhhhHHhcCCC
Confidence 999999999999999999999999999999999999999999999999995 99999999997 8999999999999999
Q ss_pred CCcHHHHHHHHHHc-CCCCccccCC------CCCcEEEecCccccccccchhhhccccccHHHHHHHhhcCCchH-HHhh
Q 003826 241 GTDLTFANKLKQHL-NSNPCFRGER------DKSFTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCSCHLP-QIFA 312 (793)
Q Consensus 241 ~tD~~f~~kl~~~~-~~~~~~~~~~------~~~F~I~HyaG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~~~~~-~lf~ 312 (793)
+||.+|++||++.+ ++||+|..++ ...|+|+||||+|.|++.|||+||+|+|++++++||++|+++++ .+|.
T Consensus 543 ~tD~tf~~kl~~~~~~~~~~f~~~~~~k~~~~~~F~I~HyAG~V~Y~~~gfleKNkD~l~~~~~~ll~~S~~~~v~~lf~ 622 (783)
T 4db1_A 543 ATDMTFKAKLFDNHLGKSANFQKPRNIKGKPEAHFSLIHYAGIVDYNIIGWLQKNKDPLNETVVGLYQKSSLKLLSTLFA 622 (783)
T ss_dssp CCHHHHHHHHHHHHTTTCTTEECCCC----C-CCEEEEETTEEEEECCTTHHHHHHCCCCHHHHHHHHTCSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCCCccCCCCCCCCCCCCeEEeCcCCceEEeCcChhhhccccccHHHHHHHHHCccHHHHHHhh
Confidence 99999999998765 8999997664 35899999999999999999999999999999999999999965 6887
Q ss_pred hcccccCCCCccCCCccCCCCCCCCccHHHHHHHHHHHHHHHHhccCCeeeeecCCCCCCCCCccchhHHHHHhhhhChh
Q 003826 313 SNMLSQSNKPVVGPLYKAGGADSQKLSVATKFKGQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVL 392 (793)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~f~~~L~~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvl 392 (793)
......+ +. ++........+..+||+++|+.||+.||++|.+|+||||||||||+.+.|+.||..+|++||||+|||
T Consensus 623 ~~~~~~~--~~-~~~~~~~~~~~~~~Tv~~~fk~sL~~Lm~~L~~t~phfVRCIkPN~~k~p~~fd~~~V~~QLr~~Gvl 699 (783)
T 4db1_A 623 NYAGADA--PI-EKGKGKAKKGSSFQTVSALHRENLNKLMTNLRSTHPHFVRCIIPNETKSPGVMDNPLVMHQLRCNGVL 699 (783)
T ss_dssp SCC---------------------CCCHHHHHHHHHHHHHHHHHTSEEEEEEEECCCSSCCTTCCCHHHHHHHHHHSSHH
T ss_pred ccccccc--cc-cCccCCCCcCCCCccHHHHHHHHHHHHHHHHHccCCEEEEeeCCCcccCCCcccchhhheeccccChH
Confidence 5432211 00 00000001122458999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCccChHHHHHHhhccccccCCCC---ChHHHHHHHHHHcCCCCcceeecceeeeeeecccccccccccc
Q 003826 393 EVVRISRSGFPTRMSHQKFARRYGFLLLESVASQ---DPLSVSVAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTRNR 469 (793)
Q Consensus 393 e~vri~r~Gyp~r~~~~~F~~RY~~L~~~~~~~~---d~~~~~~~il~~~~~~~~~~~vGkTkVFlr~~~~~~LE~~R~~ 469 (793)
|+|||+|+|||+|++|.+|+.||++|.|..++.. |+++.|+.||..+++++++|++|+||||||.+++..||++|.+
T Consensus 700 E~iri~r~Gyp~R~~f~eF~~RY~~L~~~~~~~~~~~d~k~~~~~ll~~~~~~~~~~~~G~TKVFlr~g~~~~LE~~R~~ 779 (783)
T 4db1_A 700 EGIRICRKGFPNRILYGDFRQRYRILNPAAIPEGQFIDSRKGAEKLLSSLDIDHNQYKFGHTKVFFKAGLLGLLEEMRDE 779 (783)
T ss_dssp HHHHHHHTSCCEEEEC--------------------------CCHHHHSSSSCGGGEEECSSEEEECTTHHHHHHHHC--
T ss_pred hheeehhcCCCccCcHHHHHHHHHHhCccccCCCCCCCHHHHHHHHHHhCCCCcCeEEECCEEEEECcCHHHHHHHHHHH
Confidence 9999999999999999999999999999877643 8899999999999999999999999999999999999999987
Q ss_pred cc
Q 003826 470 TL 471 (793)
Q Consensus 470 ~l 471 (793)
.+
T Consensus 780 ~l 781 (783)
T 4db1_A 780 RL 781 (783)
T ss_dssp --
T ss_pred Hh
Confidence 65
No 10
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=100.00 E-value=7.6e-119 Score=1065.76 Aligned_cols=475 Identities=32% Similarity=0.560 Sum_probs=419.7
Q ss_pred CCccCccccCCCc--------------------------cccCCcccHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 003826 2 SAKEYKYLRQSSC--------------------------YSINGVDDAEQFRIVVEALDIVHVSKEDQESVFAMLAAVLW 55 (793)
Q Consensus 2 ~~~~y~yL~~s~~--------------------------~~~~~~dD~~~f~~~~~Al~~lg~~~~~~~~if~ilaaILh 55 (793)
+|++|+||++|++ ..++++||+++|+.|+.||++|||+++++..||+|||||||
T Consensus 263 ~~~~y~yL~~g~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~dD~~~f~~~~~Am~~lG~~~~e~~~i~~ilaaILh 342 (784)
T 2v26_A 263 SPDNFRYLNRGCTRYFANKETDKQILQNRKSPEYLKAGSLKDPLLDDHGDFIRMCTAMKKIGLDDEEKLDLFRVVAGVLH 342 (784)
T ss_dssp CGGGCHHHHTSCCCCBCCHHHHTTSCGGGCCHHHHHHCCBCCSSCCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred ChhhCccccCCCccccccccccccccccccccccccccccCCCCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Confidence 5789999999753 24678999999999999999999999999999999999999
Q ss_pred hcCeeEEeeCC-CCceee--cCchHHHHHHHHhCCCHHHHHHHHccceee-----ecCceEEecCCHHHHHHHHHHHHHH
Q 003826 56 LGNVSFTVIDN-ENHVEP--VADEGLITVAKLIGCDIGELKLALSTRKMR-----VGNDTIVQNLTLSQATDTRDALAKS 127 (793)
Q Consensus 56 LGNi~F~~~~~-~~~~~~--~~~~~l~~~a~LLGv~~~~L~~~L~~~~i~-----~~~e~i~~~lt~~qA~~~RdaLak~ 127 (793)
||||+|...++ ++.+.+ .+.+.++.||.||||++++|.++||+|++. ++|+.++++++++||.++||||||+
T Consensus 343 LGNi~F~~~~~~~~~~~v~~~~~~~l~~~a~LLgv~~~~L~~aL~~r~~~t~~g~~~ge~i~~~l~~~qA~~~rdalaK~ 422 (784)
T 2v26_A 343 LGNIDFEEAGSTSGGCNLKNKSTQALEYCAELLGLDQDDLRVSLTTRVMLTTAGGAKGTVIKVPLKVEQANNARDALAKT 422 (784)
T ss_dssp HHTCCEEECTTTTSSEEECGGGHHHHHHHHHHHTCCHHHHHHHHHEEEC-----------CEEECCHHHHHHHHHHHHHH
T ss_pred cccceeeeccCCCCccccccCCHHHHHHHHHHhCCCHHHHHHHHhhcEEeccccCCCCCeEeecCCHHHHHHHHHHHHHH
Confidence 99999987532 233444 457899999999999999999999999987 6789999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhccCCCCCcceeEEeecCCCccCCCCChhHHHHHHhhHHHHHHHHHHhhHHHHHHHhhcCCccc
Q 003826 128 IYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWA 207 (793)
Q Consensus 128 LY~~LF~wiV~~IN~~L~~~~~~~~~~IgILDI~GFE~f~~NsfEQlcINyaNErLq~~f~~~~f~~eqeey~~EgI~~~ 207 (793)
||++||+|||.+||.+|... ....+||||||||||+|+.|||||||||||||+|||+||+|+|+.||+||.+|||+|+
T Consensus 423 lY~rLF~wlV~~IN~~l~~~--~~~~~IGvLDI~GFE~f~~NsFEQlcINyaNEkLQq~F~~~~f~~EqeeY~~EgI~w~ 500 (784)
T 2v26_A 423 VYSHLFDHVVNRVNQCFPFE--TSSYFIGVLDIAGFEYFEHNSFEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVN 500 (784)
T ss_dssp HHHHHHHHHHHHHHTTSCCS--CCSEEEEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHHHhcCcc--cccceeeecccCCcccCCcCCHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCcc
Confidence 99999999999999999753 3467999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCchhHHHhhhcCCCccccccccccCCCCCCcHHHHHHHHHHcCCCCccccCC------------CCCcEEEecCc
Q 003826 208 KVDFEDNKDCLNLFEKKPLGLLSLLDEESTFPNGTDLTFANKLKQHLNSNPCFRGER------------DKSFTVSHYAG 275 (793)
Q Consensus 208 ~i~f~dN~~~ldlie~kp~Gil~lLdee~~~p~~tD~~f~~kl~~~~~~~~~~~~~~------------~~~F~I~HyaG 275 (793)
+|+|.||++|||||+++|.|||+||||||++|++||.+|++||++++++|++|..++ +..|+|+||||
T Consensus 501 ~i~f~DN~~~idLie~kp~GIlslLDEe~~~p~~tD~~f~~kl~~~~~~~~~~~~p~~~~~~~~~~~~~~~~F~I~HyAG 580 (784)
T 2v26_A 501 EVHYVDNQDCIDLIEARLVGILDILDEENRLPQPSDQHFTSAVHQKHKDHFRLSIPRKSKLAIHRNIRDDEGFIIRHFAG 580 (784)
T ss_dssp CCCCCCCHHHHHHHHCTTTSHHHHHHHHHHSSSCCHHHHHHHHHHHTTTCTTEECGGGCSSGGGTTSCTTSEEEEEETTE
T ss_pred cccccChHHHHHHHhhccccHHHHHHHHhcCCCCChHHHHHHHHHHhCCCcccccCCCccccccccccCCCceEeeecCc
Confidence 999999999999999999999999999999999999999999999999999886542 24899999999
Q ss_pred cccccccchhhhccccccHHHHHHHhhcCCchH-HHhhhcccccCCCCccCCCccCCCCCCCCccHHHHHHHHHHHHHHH
Q 003826 276 EVIYDTTGFLEKNRDLLHLDSIELLSSCSCHLP-QIFASNMLSQSNKPVVGPLYKAGGADSQKLSVATKFKGQLFQLMQR 354 (793)
Q Consensus 276 ~V~Y~~~gfleKN~D~l~~~~~~ll~~S~~~~~-~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~f~~~L~~Lm~~ 354 (793)
+|.|++.||++||+|+|+++++.||++|+++++ .+|+....... .+ +........+||+++|+.||+.||++
T Consensus 581 ~V~Y~~~gfleKN~D~l~~~~~~ll~~S~~~~l~~Lf~~~~~~~~-~~------~~~~~~~~~~Tv~~~fk~sL~~Lm~~ 653 (784)
T 2v26_A 581 AVCYETTQFVEKNNDALHMSLESLICESRDKFIRELFESSTNNNK-DT------KQKAGKLSFISVGNKFKTQLNLLLDK 653 (784)
T ss_dssp EEEEECTTHHHHTBCCCCHHHHHHHHTCSCHHHHHHC-----------------------CCCCBHHHHHHHHHHHHHHH
T ss_pred cEeeeccCHHHhccchhhHHHHHHHHhchhhHHHHHccccccccc-Cc------ccCCCCCccccHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999865 58875431110 00 00011234589999999999999999
Q ss_pred HhccCCeeeeecCCCCCCCCCccchhHHHHHhhhhChhHHHHHHhcCCCCccChHHHHHHhhccccccCCCCChHHHHHH
Q 003826 355 LESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFLLLESVASQDPLSVSVA 434 (793)
Q Consensus 355 L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~~F~~RY~~L~~~~~~~~d~~~~~~~ 434 (793)
|.+|+||||||||||+.+.|+.||..+|++||||+||||+|||+|+|||+|++|.+|+.||++|+|..++..|+++.|+.
T Consensus 654 L~~t~phfVRCIkPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~R~~f~eF~~RY~~L~~~~~~~~d~~~~~~~ 733 (784)
T 2v26_A 654 LRSTGASFIRCIKPNLKMTSHHFEGAQILSQLQCSGMVSVLDLMQGGFPSRASFHELYNMYKKYMPDKLARLDPRLFCKA 733 (784)
T ss_dssp HHTSEEEEEEEECCCSSCCSSCCCHHHHHHHHHHTTHHHHHHHHTSCCSEEEEHHHHHHHHGGGCCHHHHTSCHHHHHHH
T ss_pred HHccCCeeEEEecCCcccccCccccccccccccccccHHHHHHHHhcCCccccHHHHHHHHhhcCCcccCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999987767799999999
Q ss_pred HHHHcCCCCcceeecceeeeeeecccccccccccccchhhHhhhhhhcccc
Q 003826 435 ILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTRNRTLHGILRVQSCFRGHQ 485 (793)
Q Consensus 435 il~~~~~~~~~~~vGkTkVFlr~~~~~~LE~~R~~~l~aa~~IQ~~~Rg~~ 485 (793)
+|..+++++++|++|+||||||.+++..||.++.........|++.+|+|+
T Consensus 734 ll~~~~~~~~~~~~G~TKVF~r~g~~~~le~~~~~~~~~~~~ii~~v~~wl 784 (784)
T 2v26_A 734 LFKALGLNEIDYKFGLTKVFFRPGKFAEFDQIMKSDPDHLAELVKRVNHWL 784 (784)
T ss_dssp HHHHTTCCGGGEEECSSEEEECTTCHHHHHHHHCCCHHHHHHHHHHHHHHC
T ss_pred HHHHcCCCcCcEEeCCceEEEcCCHHHHHHHHHhhCHHHHHHHHHHHHhhC
Confidence 999999999999999999999999999999987665555555667777764
No 11
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=100.00 E-value=1.9e-118 Score=1054.01 Aligned_cols=458 Identities=40% Similarity=0.701 Sum_probs=384.4
Q ss_pred CCccCcc-ccCCCccccCCcccHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhcCeeEEeeCCCCceeecCchHHHH
Q 003826 2 SAKEYKY-LRQSSCYSINGVDDAEQFRIVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNENHVEPVADEGLIT 80 (793)
Q Consensus 2 ~~~~y~y-L~~s~~~~~~~~dD~~~f~~~~~Al~~lg~~~~~~~~if~ilaaILhLGNi~F~~~~~~~~~~~~~~~~l~~ 80 (793)
+|++|+| |++ +|..++++||+++|+.|+.||++|||+++++..||+|||||||||||+|. .++++.+.+.+.+.++.
T Consensus 300 ~~~~y~yll~~-g~~~~~~~dD~~~f~~~~~Am~~lGf~~~e~~~i~~ilaaILhLGNi~F~-~~~~~~~~~~~~~~l~~ 377 (770)
T 1w9i_A 300 GPESFNYLNQS-GCVDIKGVSDSEEFKITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFE-KGAGEGAVLKDKTALNA 377 (770)
T ss_dssp CGGGCTTTSSS-SCCCCTTCCHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHTCCCE-ECSSSSEECSCCHHHHH
T ss_pred ChhhccccccC-CccccCCCchHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcCceEe-cCCCCccccCChHHHHH
Confidence 5789999 776 47899999999999999999999999999999999999999999999999 55567788899999999
Q ss_pred HHHHhCCCHHHHHHHHccceeeecCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCcceeEEeec
Q 003826 81 VAKLIGCDIGELKLALSTRKMRVGNDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDI 160 (793)
Q Consensus 81 ~a~LLGv~~~~L~~~L~~~~i~~~~e~i~~~lt~~qA~~~RdaLak~LY~~LF~wiV~~IN~~L~~~~~~~~~~IgILDI 160 (793)
+|.||||++++|.++||++++.+|+|.+++++|++||.++||||||+||++||+|||.+||.+|..... ..+||||||
T Consensus 378 ~a~LLgv~~~~L~~aL~~~~~~~~~e~v~~~~~~~qA~~~rdalaK~lY~rLF~wlV~~IN~~l~~~~~--~~~IGvLDI 455 (770)
T 1w9i_A 378 ASTVFGVNPSVLEKALMEPRILAGRDLVAQHLNVEKSSSSRDALVKALYGRLFLWLVKKINNVLCQERK--AYFIGVLDI 455 (770)
T ss_dssp HHHHHTCCHHHHHHHHHSCEEEETTEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSCC--SEEEEEEEC
T ss_pred HHHHhCCCHHHHHHHhhCcEEEeCCeeEEeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--CCeeeeccC
Confidence 999999999999999999999999999999999999999999999999999999999999999986433 789999999
Q ss_pred CCCccCCCCChhHHHHHHhhHHHHHHHHHHhhHHHHHHHhhcCCcccccccC-CchhHHHhhhcC-CCccccccccccCC
Q 003826 161 YGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFE-DNKDCLNLFEKK-PLGLLSLLDEESTF 238 (793)
Q Consensus 161 ~GFE~f~~NsfEQlcINyaNErLq~~f~~~~f~~eqeey~~EgI~~~~i~f~-dN~~~ldlie~k-p~Gil~lLdee~~~ 238 (793)
||||+|+.|||||||||||||+|||+||+|+|+.||+||.+|||+|+.|+|. ||++|||||+++ |.|||+||||||++
T Consensus 456 ~GFE~F~~NsFEQlCINyaNEkLQq~Fn~~~f~~EqeeY~~EgI~w~~i~f~~dn~~~idLiek~~p~GilslLDEec~~ 535 (770)
T 1w9i_A 456 YGFEIFKVNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPGILALLDEQSVF 535 (770)
T ss_dssp CCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCGGGGGHHHHHHHHCTTTTCHHHHHHHHHSS
T ss_pred ccccccccCCHHHHHHHhhHHHHHHHHHhhhhHHHHHHhhccCCCceeeccccCcHHHHHHHhCCCCCchhhhhhhhhCC
Confidence 9999999999999999999999999999999999999999999999999995 999999999984 99999999999999
Q ss_pred CCCCcHHHHHHH-HHHcCCCCccccCCC--CCcEEEecCccccccccchhhhccccccHHHHHHHhhcCCchH-HHhhhc
Q 003826 239 PNGTDLTFANKL-KQHLNSNPCFRGERD--KSFTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCSCHLP-QIFASN 314 (793)
Q Consensus 239 p~~tD~~f~~kl-~~~~~~~~~~~~~~~--~~F~I~HyaG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~~~~~-~lf~~~ 314 (793)
|++||.+|++|| .+++++||+|..++. ..|+|+||||+|.|++.||++||+|+|++++++||++|+++++ .+|...
T Consensus 536 p~~tD~~f~~kL~~~~~~~~~~f~~p~~~~~~F~I~HyAG~V~Y~~~gfleKNkD~l~~~~~~ll~~S~~~~v~~Lf~~~ 615 (770)
T 1w9i_A 536 PNATDNTLITKLHSHFSKKNAKYEEPRFSKTEFGVTHYAGQVMYEIQDWLEKNKDPLQQDLELCFKDSSDNVVTKLFNDP 615 (770)
T ss_dssp SSCCHHHHHHHHHHHHTTTSTTEECCSSCSSEEEEEETTEEEEEECTTHHHHHHCCCCHHHHHHHHTCSSTTHHHHHHCH
T ss_pred CCCChHHHHHHHHHHhcCCCCCccCCCCCCCceEeeccCccccccccChhhhccCcccHHHHHHHHhchHHHHHHHhhcc
Confidence 999999999996 567889999987753 7999999999999999999999999999999999999999865 688753
Q ss_pred ccccCCCCccCCCccCCCCCCCCccHHHHHHHHHHHHHHHHhccCCeeeeecCCCCCCCCCccchhHHHHHhhhhChhHH
Q 003826 315 MLSQSNKPVVGPLYKAGGADSQKLSVATKFKGQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEV 394 (793)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~tv~~~f~~~L~~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~ 394 (793)
... +. ++ .....+||+++|+.||+.||++|.+|+||||||||||+.+.|+.||..+|++||||+||||+
T Consensus 616 ~~~-------~~-~~---k~~~~~Tv~~~fk~sL~~Lm~~L~~t~phfVRCIkPN~~k~p~~fd~~~V~~QLr~~GvlE~ 684 (770)
T 1w9i_A 616 NIA-------SR-AK---KGANFITVAAQYKEQLASLMATLETTNPHFVRCIIPNNKQLPAKLEDKVVLDQLRCNGVLEG 684 (770)
T ss_dssp HHH-------CC-CE---ETTEECCHHHHHHHHHHHHHHHHHTSEEEEEEEECSCSSCCSSCCCHHHHHHHHHHSSHHHH
T ss_pred CCC-------CC-CC---CCCCCcchhHHHHHHHHHHHHHHHhcCceeeeeecCCcccccCccCchhhHhHhcccchHHH
Confidence 310 00 00 11235899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCccChHHHHHHhhccccccCCC--CChHHHHHHHHHHcCCCCcceeecceeeeeeecccccccccccccch
Q 003826 395 VRISRSGFPTRMSHQKFARRYGFLLLESVAS--QDPLSVSVAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTRNRTLH 472 (793)
Q Consensus 395 vri~r~Gyp~r~~~~~F~~RY~~L~~~~~~~--~d~~~~~~~il~~~~~~~~~~~vGkTkVFlr~~~~~~LE~~R~~~l~ 472 (793)
|||+|+|||+|++|.+|+.||++|.| .++. .|+++.|+.+|..+++++++|++|+||||||.+++..||++|.+.+.
T Consensus 685 iri~r~Gyp~R~~f~eF~~RY~~L~~-~~~~~~~d~k~~~~~lL~~~~~~~~~~~~G~TKVF~r~~~l~~LE~~R~~~l~ 763 (770)
T 1w9i_A 685 IRITRKGFPNRIIYADFVKRYYLLAP-NVPRDAEDSQKATDAVLKHLNIDPEQFRFGITKIFFRAGQLARIEEARELRGD 763 (770)
T ss_dssp HHHTTSSCCEEEESCC------------------------------------CCCCCSSEEEECTTTTTC----------
T ss_pred HHHHHhcCcccccHHHHHHHHHHhcc-ccccCCCCHHHHHHHHHHhcCCCcccEEeCCeeEEecccHHHHHHHHHHHHHH
Confidence 99999999999999999999999998 6654 38899999999999999999999999999999999999999998886
Q ss_pred hhH
Q 003826 473 GIL 475 (793)
Q Consensus 473 aa~ 475 (793)
.++
T Consensus 764 ~~~ 766 (770)
T 1w9i_A 764 YKD 766 (770)
T ss_dssp ---
T ss_pred HHh
Confidence 543
No 12
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=99.76 E-value=4.9e-18 Score=209.20 Aligned_cols=186 Identities=18% Similarity=0.210 Sum_probs=138.3
Q ss_pred chhhHhhhhhhcccccchhhcccccchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHhhhhHHHHHH
Q 003826 471 LHGILRVQSCFRGHQARLCLKELRRGIVALQSFIRGEKIRKEYALVLQRHRAAVVIQRQIKSRVARQKLKNIKYSSIMIQ 550 (793)
Q Consensus 471 l~aa~~IQ~~~Rg~~~R~~~~~~r~a~i~IQs~~Rg~~aRr~~~~l~~~~~AAi~IQ~~~R~~~~R~~~~~~r~aai~IQ 550 (793)
..+|+.||++||||.+|+.|..++.+++.||++|||+++|+.|..++ ...||+.||++||||++|+.|...+++++.||
T Consensus 816 ~~AAi~IQs~~Rg~~~Rk~y~~lr~aai~IQs~~Rg~laRr~~~~lr-~~~aav~IQ~~~Rg~l~R~~y~~~~~aai~iQ 894 (1080)
T 2dfs_A 816 TRAAIIIQKFQRMYVVRKRYQCMRDATIALQALLRGYLVRNKYQMML-REHKSIIIQKHVRGWLARVHYHRTLKAIVYLQ 894 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHTTTHHHHHTTTTHHHHHHHH
T ss_pred chhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 46889999999999999999999999999999999999999998876 55799999999999999999999999999999
Q ss_pred HHHhhHHHHhhhhhhhhhHhHhh----------hc--------------C-----C--------hhHHHHHHH---HHHH
Q 003826 551 SVIRGWLVRRCSGDICLLKSVES----------KG--------------N-----D--------SDEVLVKAS---FLAE 590 (793)
Q Consensus 551 s~~Rg~~aRr~~~~l~~~~~~~~----------~~--------------~-----~--------~~~~~~~~~---~l~~ 590 (793)
+.|||+++|+.+.+++...+... .+ . . ..++..+.. .+..
T Consensus 895 s~~R~~laRr~~~~Lk~ear~~~~l~~~~~~LE~kl~eLq~rL~~~e~~n~~L~~~~~~~~~~~~~e~~~L~~~l~~le~ 974 (1080)
T 2dfs_A 895 CCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRM 974 (1080)
T ss_dssp HHHHHHHHHHHTTTC-----------------------------------------CHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998876553100 00 0 0 001111111 1111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 003826 591 LQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSLSIAKKSLAI 657 (793)
Q Consensus 591 l~~r~~~~e~~l~~~e~e~~~L~~~L~~~e~~~~ele~k~~~~ee~~qkq~~~lq~~L~a~~~sla~ 657 (793)
++.+..+++.++.++++++++|+++++.+.++.+++|++...+.+.++....+|+++....+.++..
T Consensus 975 ~~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~~e~~~L~qq~~~ 1041 (1080)
T 2dfs_A 975 SEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEE 1041 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2223334455567778888888888888888888888888888877777777777776666665533
No 13
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus}
Probab=98.95 E-value=2.3e-10 Score=91.60 Aligned_cols=51 Identities=25% Similarity=0.392 Sum_probs=34.4
Q ss_pred hhhHhhhhhhcccccchhhcccccchhhhhhHHHHHHHHHHHHHHHhHHHHH
Q 003826 472 HGILRVQSCFRGHQARLCLKELRRGIVALQSFIRGEKIRKEYALVLQRHRAA 523 (793)
Q Consensus 472 ~aa~~IQ~~~Rg~~~R~~~~~~r~a~i~IQs~~Rg~~aRr~~~~l~~~~~AA 523 (793)
.+++.||++||||++|+.|..++.+++.||++|||+++|+.|..++ ..+||
T Consensus 6 ~aai~IQ~~~Rg~~~Rk~~~~~r~aai~IQ~~~Rg~~aR~~~~~~r-~~~aA 56 (58)
T 2ix7_C 6 AACIRIQKTIRGWLLRKRYLCMQRAAITVQRYVRGYQARCYAKFLR-RTKAA 56 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCc
Confidence 4566777777777777777777777777777777777777776665 33444
No 14
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus}
Probab=98.94 E-value=1.7e-09 Score=86.43 Aligned_cols=50 Identities=22% Similarity=0.345 Sum_probs=42.0
Q ss_pred HHHHHHHHHHhhhHHHHHHHHhhhhHHHHHHHHHhhHHHHhhhhhhhhhH
Q 003826 520 HRAAVVIQRQIKSRVARQKLKNIKYSSIMIQSVIRGWLVRRCSGDICLLK 569 (793)
Q Consensus 520 ~~AAi~IQ~~~R~~~~R~~~~~~r~aai~IQs~~Rg~~aRr~~~~l~~~~ 569 (793)
+.||++||++||||++|+.|..++.+++.||+.|||+++|+.+..++...
T Consensus 5 ~~aai~IQ~~~Rg~~~Rk~~~~~r~aai~IQ~~~Rg~~aR~~~~~~r~~~ 54 (58)
T 2ix7_C 5 RAACIRIQKTIRGWLLRKRYLCMQRAAITVQRYVRGYQARCYAKFLRRTK 54 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 46888888888888888888888888899999999999988887766543
No 15
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}
Probab=98.90 E-value=1.9e-09 Score=82.74 Aligned_cols=46 Identities=22% Similarity=0.301 Sum_probs=35.5
Q ss_pred cccchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHH
Q 003826 493 LRRGIVALQSFIRGEKIRKEYALVLQRHRAAVVIQRQIKSRVARQKL 539 (793)
Q Consensus 493 ~r~a~i~IQs~~Rg~~aRr~~~~l~~~~~AAi~IQ~~~R~~~~R~~~ 539 (793)
++.+++.||++|||+++|+.|..++ +..||++||++||||++|+.|
T Consensus 2 ~r~a~i~iQ~~~Rg~l~R~~~~~~~-~~~aai~IQ~~~Rg~~~Rk~y 47 (48)
T 1n2d_C 2 ISQAIKYLQNNIKGFIIRQRVNDEM-KVNCATLLQAAYRGHSIRANV 47 (48)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhHHHHHhh
Confidence 4567788888888888888887665 456788888888888887766
No 16
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}
Probab=98.69 E-value=2.6e-08 Score=76.28 Aligned_cols=42 Identities=24% Similarity=0.354 Sum_probs=39.8
Q ss_pred HHHHHHHHHhhhHHHHHHHHhhhh--HHHHHHHHHhhHHHHhhh
Q 003826 521 RAAVVIQRQIKSRVARQKLKNIKY--SSIMIQSVIRGWLVRRCS 562 (793)
Q Consensus 521 ~AAi~IQ~~~R~~~~R~~~~~~r~--aai~IQs~~Rg~~aRr~~ 562 (793)
.|++.||++|||+++|+.|...+. +++.||+.||||++|+.|
T Consensus 4 ~a~i~iQ~~~Rg~l~R~~~~~~~~~~aai~IQ~~~Rg~~~Rk~y 47 (48)
T 1n2d_C 4 QAIKYLQNNIKGFIIRQRVNDEMKVNCATLLQAAYRGHSIRANV 47 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhh
Confidence 589999999999999999999887 999999999999999976
No 17
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.32 E-value=6.6e-06 Score=103.57 Aligned_cols=47 Identities=17% Similarity=0.134 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHhhh---hHHHHHHHHHhhHHHHhhhhhh
Q 003826 519 RHRAAVVIQRQIKSRVARQKLKNIK---YSSIMIQSVIRGWLVRRCSGDI 565 (793)
Q Consensus 519 ~~~AAi~IQ~~~R~~~~R~~~~~~r---~aai~IQs~~Rg~~aRr~~~~l 565 (793)
...+++.||++||||++|+.|.+++ .+++.||+.||+|++|+.+..+
T Consensus 791 l~~~~~~iQ~~~Rg~l~R~~~~k~~~~~~a~~~iQ~~~r~~~~~k~~~~~ 840 (1184)
T 1i84_S 791 ITDVIIAFQAQCRGYLARKAFAKRQQQLESIFCIQYNVRSFMNVXHWPWM 840 (1184)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 3468999999999999999999874 6899999999999999876433
No 18
>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=97.82 E-value=1.6e-05 Score=64.31 Aligned_cols=45 Identities=20% Similarity=0.234 Sum_probs=38.3
Q ss_pred ccchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHH
Q 003826 494 RRGIVALQSFIRGEKIRKEYALVLQRHRAAVVIQRQIKSRVARQK 538 (793)
Q Consensus 494 r~a~i~IQs~~Rg~~aRr~~~~l~~~~~AAi~IQ~~~R~~~~R~~ 538 (793)
...++.||+.+||+++|+.|.++..++.|+.+||+++|+|..++.
T Consensus 4 ~~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~lr~ 48 (63)
T 2bl0_A 4 GEIVKVVQAAARGWVERKHFRQAREKSVSARIIQDNIRAYLEFKN 48 (63)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 356789999999999999999988777888899999999887654
No 19
>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A
Probab=97.81 E-value=2.1e-05 Score=63.87 Aligned_cols=46 Identities=30% Similarity=0.398 Sum_probs=38.5
Q ss_pred ccchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHH
Q 003826 494 RRGIVALQSFIRGEKIRKEYALVLQRHRAAVVIQRQIKSRVARQKL 539 (793)
Q Consensus 494 r~a~i~IQs~~Rg~~aRr~~~~l~~~~~AAi~IQ~~~R~~~~R~~~ 539 (793)
...++.||+.+||+++|+.|.++..+..|+.+||+++|+|..++.+
T Consensus 6 ~~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~l~~w 51 (64)
T 1wdc_A 6 SKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNW 51 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 3567889999999999999998887777888999999998876543
No 20
>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A
Probab=96.96 E-value=0.0014 Score=53.04 Aligned_cols=43 Identities=28% Similarity=0.427 Sum_probs=38.8
Q ss_pred HHHHHHHHHhhhHHHHHHHHhh---hhHHHHHHHHHhhHHHHhhhh
Q 003826 521 RAAVVIQRQIKSRVARQKLKNI---KYSSIMIQSVIRGWLVRRCSG 563 (793)
Q Consensus 521 ~AAi~IQ~~~R~~~~R~~~~~~---r~aai~IQs~~Rg~~aRr~~~ 563 (793)
..++.||+.+||+++|+.|.+. +.|+..||..+|+|+.++...
T Consensus 7 ~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~l~~w~ 52 (64)
T 1wdc_A 7 KIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNWQ 52 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCh
Confidence 5789999999999999999998 778889999999999988653
No 21
>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=96.95 E-value=0.0011 Score=53.41 Aligned_cols=43 Identities=23% Similarity=0.308 Sum_probs=38.7
Q ss_pred HHHHHHHHHhhhHHHHHHHHhh---hhHHHHHHHHHhhHHHHhhhh
Q 003826 521 RAAVVIQRQIKSRVARQKLKNI---KYSSIMIQSVIRGWLVRRCSG 563 (793)
Q Consensus 521 ~AAi~IQ~~~R~~~~R~~~~~~---r~aai~IQs~~Rg~~aRr~~~ 563 (793)
..++.||+.+|||++|+.|.+. +.|+..||..+|+|+.++...
T Consensus 5 ~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~lr~w~ 50 (63)
T 2bl0_A 5 EIVKVVQAAARGWVERKHFRQAREKSVSARIIQDNIRAYLEFKNWA 50 (63)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCh
Confidence 4689999999999999999998 778899999999999988653
No 22
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=96.83 E-value=0.0019 Score=77.53 Aligned_cols=49 Identities=27% Similarity=0.319 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHhh---hhHHHHHHHHHhhHHHHhhhhhhhh
Q 003826 519 RHRAAVVIQRQIKSRVARQKLKNI---KYSSIMIQSVIRGWLVRRCSGDICL 567 (793)
Q Consensus 519 ~~~AAi~IQ~~~R~~~~R~~~~~~---r~aai~IQs~~Rg~~aRr~~~~l~~ 567 (793)
...+|+.||++||||++|++|.++ +.|+++||+.||+|++||.+.-++.
T Consensus 778 l~~~~~~iQa~~Rg~l~R~~~~k~~~~r~a~~~IQ~~~R~~~~~r~~~w~~l 829 (837)
T 1kk8_A 778 LSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNWQWWKL 829 (837)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHH
Confidence 346899999999999999999988 6799999999999999998754443
No 23
>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa}
Probab=96.69 E-value=0.0083 Score=56.06 Aligned_cols=32 Identities=16% Similarity=0.208 Sum_probs=24.4
Q ss_pred HHHHhHHHHHHHHHHHhhhHHHHHHHHhhhhH
Q 003826 514 ALVLQRHRAAVVIQRQIKSRVARQKLKNIKYS 545 (793)
Q Consensus 514 ~~l~~~~~AAi~IQ~~~R~~~~R~~~~~~r~a 545 (793)
+++.++..|+++||+++|||++|+.|+.....
T Consensus 39 nKI~yR~~~~i~iQktvR~~L~rkkhkPRi~g 70 (148)
T 3gn4_A 39 NKIKYRAEACIKMQKTIRMWLCKRRHKPRIDG 70 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 44555777889999999999999888875433
No 24
>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa}
Probab=95.67 E-value=0.083 Score=49.35 Aligned_cols=22 Identities=32% Similarity=0.495 Sum_probs=19.6
Q ss_pred hhHHHHHHHHHhhHHHHhhhhh
Q 003826 543 KYSSIMIQSVIRGWLVRRCSGD 564 (793)
Q Consensus 543 r~aai~IQs~~Rg~~aRr~~~~ 564 (793)
..++++||+.+|||++|+.++.
T Consensus 45 ~~~~i~iQktvR~~L~rkkhkP 66 (148)
T 3gn4_A 45 AEACIKMQKTIRMWLCKRRHKP 66 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhh
Confidence 4699999999999999999863
No 25
>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus}
Probab=93.23 E-value=0.05 Score=35.73 Aligned_cols=19 Identities=32% Similarity=0.457 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHhhhHHHHH
Q 003826 519 RHRAAVVIQRQIKSRVARQ 537 (793)
Q Consensus 519 ~~~AAi~IQ~~~R~~~~R~ 537 (793)
+..||++||..||+|+.++
T Consensus 5 Ee~aA~vIQrA~R~yl~~~ 23 (27)
T 2kxw_B 5 EEVSAIVIQRAYRRYLLKQ 23 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4468888888888887764
No 26
>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens}
Probab=93.16 E-value=0.071 Score=36.16 Aligned_cols=21 Identities=29% Similarity=0.482 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHhhhHHHHHHH
Q 003826 519 RHRAAVVIQRQIKSRVARQKL 539 (793)
Q Consensus 519 ~~~AAi~IQ~~~R~~~~R~~~ 539 (793)
+..||++||..||+|+.|+..
T Consensus 5 Ee~aA~vIQrA~R~yl~rr~~ 25 (31)
T 2l53_B 5 EEVSAMVIQRAFRRHLLQRSL 25 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 446888888888888877543
No 27
>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens}
Probab=88.76 E-value=0.27 Score=33.35 Aligned_cols=20 Identities=30% Similarity=0.429 Sum_probs=17.6
Q ss_pred hHHHHHHHHHhhHHHHhhhh
Q 003826 544 YSSIMIQSVIRGWLVRRCSG 563 (793)
Q Consensus 544 ~aai~IQs~~Rg~~aRr~~~ 563 (793)
.+|++||.+||+|+.|+...
T Consensus 7 ~aA~vIQrA~R~yl~rr~~~ 26 (31)
T 2l53_B 7 VSAMVIQRAFRRHLLQRSLK 26 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 48999999999999998754
No 28
>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus}
Probab=87.40 E-value=0.34 Score=31.83 Aligned_cols=19 Identities=32% Similarity=0.487 Sum_probs=16.6
Q ss_pred hHHHHHHHHHhhHHHHhhh
Q 003826 544 YSSIMIQSVIRGWLVRRCS 562 (793)
Q Consensus 544 ~aai~IQs~~Rg~~aRr~~ 562 (793)
.+|++||.+||+++.++..
T Consensus 7 ~aA~vIQrA~R~yl~~~~~ 25 (27)
T 2kxw_B 7 VSAIVIQRAYRRYLLKQKV 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHHHHHHHHhhh
Confidence 5899999999999998753
No 29
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=86.88 E-value=0.65 Score=57.07 Aligned_cols=31 Identities=10% Similarity=0.204 Sum_probs=15.6
Q ss_pred hhhHHHHHHHHhhhhHHHHHHHHHhhHHHHh
Q 003826 530 IKSRVARQKLKNIKYSSIMIQSVIRGWLVRR 560 (793)
Q Consensus 530 ~R~~~~R~~~~~~r~aai~IQs~~Rg~~aRr 560 (793)
+|||++|++|++++.+++.||..+|++..|+
T Consensus 784 ~r~~l~r~~~~k~~~~a~~i~~~~r~~~~r~ 814 (1052)
T 4anj_A 784 VNHWLICSRWKKVQWCSLSVIKLKNKIKYRA 814 (1052)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555554444333
No 30
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=85.48 E-value=13 Score=34.62 Aligned_cols=69 Identities=9% Similarity=0.101 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 580 EVLVKASFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSL 648 (793)
Q Consensus 580 ~~~~~~~~l~~l~~r~~~~e~~l~~~e~e~~~L~~~L~~~e~~~~ele~k~~~~ee~~qkq~~~lq~~L 648 (793)
.+..+...+..++.++..++.++..+..-++.++.++..+.-+...+|.++..++++-+.-...|=...
T Consensus 69 ~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM~rk 137 (152)
T 3a7p_A 69 TLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARWLKKT 137 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566777788888888888888888888888888888888888888888888887655554444443
No 31
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=77.83 E-value=1.9 Score=51.46 Aligned_cols=26 Identities=23% Similarity=0.411 Sum_probs=16.9
Q ss_pred HHHHHHHHHhhhHHHHHHHHhhhhHH
Q 003826 521 RAAVVIQRQIKSRVARQKLKNIKYSS 546 (793)
Q Consensus 521 ~AAi~IQ~~~R~~~~R~~~~~~r~aa 546 (793)
.+|+.||++||||++|++|.++++++
T Consensus 769 ~~~~~iQ~~~Rg~l~R~~~~~~r~a~ 794 (795)
T 1w7j_A 769 AACIRIQKTIRGWLMRKKYMRMRRGD 794 (795)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46777777777777777777766543
No 32
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=76.11 E-value=25 Score=32.43 Aligned_cols=44 Identities=7% Similarity=0.104 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 591 LQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSME 634 (793)
Q Consensus 591 l~~r~~~~e~~l~~~e~e~~~L~~~L~~~e~~~~ele~k~~~~e 634 (793)
++..+.+.+.++..+..++..++.+++..+++..++..+...++
T Consensus 80 L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~ 123 (138)
T 3hnw_A 80 LSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQ 123 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444444444333
No 33
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=76.00 E-value=21 Score=30.78 Aligned_cols=38 Identities=11% Similarity=0.255 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 597 KAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSME 634 (793)
Q Consensus 597 ~~e~~l~~~e~e~~~L~~~L~~~e~~~~ele~k~~~~e 634 (793)
.++.++...+.+...|..+|......+.+.|.....++
T Consensus 16 ~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie 53 (97)
T 2eqb_B 16 TLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLN 53 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444444444444444444333333
No 34
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=74.15 E-value=45 Score=33.83 Aligned_cols=73 Identities=11% Similarity=0.125 Sum_probs=44.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 578 SDEVLVKASFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSLSI 650 (793)
Q Consensus 578 ~~~~~~~~~~l~~l~~r~~~~e~~l~~~e~e~~~L~~~L~~~e~~~~ele~k~~~~ee~~qkq~~~lq~~L~a 650 (793)
..+...+...+..++++...++.++.++.++...++..+...+.+..+++..+..........+..+..+++.
T Consensus 89 ~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~e~~~e~~~ 161 (256)
T 3na7_A 89 ERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVENEVKNIKETQQI 161 (256)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555556666666666666666666666666666666666666666666666666655555555555443
No 35
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=71.49 E-value=28 Score=31.50 Aligned_cols=15 Identities=20% Similarity=0.430 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHHH
Q 003826 590 ELQRRVLKAEAALRE 604 (793)
Q Consensus 590 ~l~~r~~~~e~~l~~ 604 (793)
++.+.+..++.++..
T Consensus 40 elrr~iq~L~~el~~ 54 (129)
T 3tnu_B 40 EMNRMIQRLRAEIDN 54 (129)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 36
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=71.17 E-value=34 Score=27.83 Aligned_cols=43 Identities=19% Similarity=0.251 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 599 EAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQM 641 (793)
Q Consensus 599 e~~l~~~e~e~~~L~~~L~~~e~~~~ele~k~~~~ee~~qkq~ 641 (793)
..++.+++.+|..|+++++.++.+..+-..+-.....+++.-+
T Consensus 6 ~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~ 48 (72)
T 3cve_A 6 HMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLL 48 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555544444444443333
No 37
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=69.72 E-value=47 Score=27.59 Aligned_cols=35 Identities=14% Similarity=0.151 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 589 AELQRRVLKAEAALREKEEENDILHQRLQQYESRW 623 (793)
Q Consensus 589 ~~l~~r~~~~e~~l~~~e~e~~~L~~~L~~~e~~~ 623 (793)
..|+.++..+-..+.-+..|+.+|+++...+..+.
T Consensus 9 eqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~ 43 (81)
T 2jee_A 9 EKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEV 43 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444433333333344444333333333
No 38
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=69.36 E-value=18 Score=29.98 Aligned_cols=44 Identities=14% Similarity=0.179 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 598 AEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQM 641 (793)
Q Consensus 598 ~e~~l~~~e~e~~~L~~~L~~~e~~~~ele~k~~~~ee~~qkq~ 641 (793)
+..++..++.+|..|++++..++.+..+-..+-.....+++.-+
T Consensus 11 ~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~ 54 (79)
T 3cvf_A 11 TQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAA 54 (79)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555555555544444444443333
No 39
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=68.63 E-value=57 Score=30.92 Aligned_cols=62 Identities=18% Similarity=0.191 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 003826 597 KAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSLSIAKKSLAID 658 (793)
Q Consensus 597 ~~e~~l~~~e~e~~~L~~~L~~~e~~~~ele~k~~~~ee~~qkq~~~lq~~L~a~~~sla~~ 658 (793)
+++.++..+..++..++..+...+.+...+.+++..+|.+......+|--+|.+++..+..+
T Consensus 94 elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~eid~~~eLKalQ~~~eqE 155 (168)
T 3o0z_A 94 DLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLEIDLNYKLKSLQQRLEQE 155 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 44455556666666666666666666666666766666666444445556677777766554
No 40
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=68.16 E-value=28 Score=33.79 Aligned_cols=53 Identities=25% Similarity=0.213 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 598 AEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSLSI 650 (793)
Q Consensus 598 ~e~~l~~~e~e~~~L~~~L~~~e~~~~ele~k~~~~ee~~qkq~~~lq~~L~a 650 (793)
++.++...+..+..|+.++..+..+...+..|......+..+++..|+.++..
T Consensus 47 LE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~ 99 (189)
T 2v71_A 47 LEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQ 99 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555555555555555555544444444444444333
No 41
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=68.07 E-value=23 Score=32.29 Aligned_cols=16 Identities=13% Similarity=0.245 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 003826 625 EYEQKMKSMEEVWQKQ 640 (793)
Q Consensus 625 ele~k~~~~ee~~qkq 640 (793)
++|..+..+...+..+
T Consensus 88 ~lE~eL~~~r~em~~q 103 (131)
T 3tnu_A 88 SVEEQLAQLRCEMEQQ 103 (131)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 42
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=66.22 E-value=5.5 Score=30.50 Aligned_cols=31 Identities=6% Similarity=0.057 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 601 ALREKEEENDILHQRLQQYESRWSEYEQKMK 631 (793)
Q Consensus 601 ~l~~~e~e~~~L~~~L~~~e~~~~ele~k~~ 631 (793)
++..+..|+.+|+.++..+.++..|+.+++.
T Consensus 20 d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555566666666666666555555543
No 43
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=65.00 E-value=26 Score=29.66 Aligned_cols=57 Identities=18% Similarity=0.213 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 580 EVLVKASFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEV 636 (793)
Q Consensus 580 ~~~~~~~~l~~l~~r~~~~e~~l~~~e~e~~~L~~~L~~~e~~~~ele~k~~~~ee~ 636 (793)
++......+..++..+.+.+.....++..+..|.++...+..+..+.+.++..+...
T Consensus 15 Em~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~ 71 (89)
T 3bas_A 15 EMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSK 71 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 344444445555555555555555555555555555555544455555555544433
No 44
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=64.82 E-value=24 Score=25.34 Aligned_cols=13 Identities=38% Similarity=0.519 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHHH
Q 003826 605 KEEENDILHQRLQ 617 (793)
Q Consensus 605 ~e~e~~~L~~~L~ 617 (793)
++..+.+|.+.+.
T Consensus 15 le~~naeLEervs 27 (42)
T 2oqq_A 15 LENKNSELEERLS 27 (42)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 45
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=64.69 E-value=38 Score=27.96 Aligned_cols=36 Identities=22% Similarity=0.273 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 602 LREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVW 637 (793)
Q Consensus 602 l~~~e~e~~~L~~~L~~~e~~~~ele~k~~~~ee~~ 637 (793)
...+-.|+..|+-.+.+++.++..||.++++-.+++
T Consensus 21 ~E~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El 56 (81)
T 3qh9_A 21 AEELLQELRHLKIKVEELENERNQYEWKLKATKAEV 56 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 345667777888888888888888888887766554
No 46
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=64.58 E-value=0.91 Score=55.77 Aligned_cols=43 Identities=14% Similarity=0.051 Sum_probs=34.3
Q ss_pred HHHHHHHhhhHHHHHHHHhhhhHHHHHHHHHhhHHHHhhhhhh
Q 003826 523 AVVIQRQIKSRVARQKLKNIKYSSIMIQSVIRGWLVRRCSGDI 565 (793)
Q Consensus 523 Ai~IQ~~~R~~~~R~~~~~~r~aai~IQs~~Rg~~aRr~~~~l 565 (793)
|..++.|+|+..++..++..+.+++.||+.+|++.+++...+.
T Consensus 767 a~~Ll~WIr~k~a~l~~r~~~~sl~~IQ~~ir~f~~fr~~ekp 809 (995)
T 2ycu_A 767 ANELVQWINDKQASLESRDFGDSIESVQSFMNAHKEYKKTEKP 809 (995)
T ss_dssp HHHHHHHTTTTTCCCSCHHHHHHHHHHHHHHHHHTTHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhcc
Confidence 4567788888888888888888999999999998777766543
No 47
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=62.89 E-value=88 Score=28.21 Aligned_cols=10 Identities=10% Similarity=0.421 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 003826 621 SRWSEYEQKM 630 (793)
Q Consensus 621 ~~~~ele~k~ 630 (793)
..+.+++.++
T Consensus 83 ~~l~el~~rl 92 (129)
T 2fxo_A 83 AKVKEMNKRL 92 (129)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 48
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=62.79 E-value=1.3e+02 Score=34.00 Aligned_cols=55 Identities=11% Similarity=0.101 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 583 VKASFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVW 637 (793)
Q Consensus 583 ~~~~~l~~l~~r~~~~e~~l~~~e~e~~~L~~~L~~~e~~~~ele~k~~~~ee~~ 637 (793)
.+......++.+....+.++...+++..+++++++.++++..++|.+.+.+.+..
T Consensus 506 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~ 560 (597)
T 3oja_B 506 NLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQ 560 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHH
Confidence 3444555555566666666666666666666666666666666666665555443
No 49
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=61.83 E-value=72 Score=26.87 Aligned_cols=38 Identities=21% Similarity=0.270 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 599 EAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEV 636 (793)
Q Consensus 599 e~~l~~~e~e~~~L~~~L~~~e~~~~ele~k~~~~ee~ 636 (793)
+.++..++++...++..++..+..+.+++.++.++.++
T Consensus 13 eeEm~~~eeel~~lke~l~k~e~~rkele~~~~~l~~e 50 (89)
T 3bas_A 13 EEEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQ 50 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444445555554445555555444444433
No 50
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=60.17 E-value=60 Score=27.26 Aligned_cols=15 Identities=27% Similarity=0.463 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHH
Q 003826 623 WSEYEQKMKSMEEVW 637 (793)
Q Consensus 623 ~~ele~k~~~~ee~~ 637 (793)
..+++..+....+.|
T Consensus 65 l~~~e~eLe~~~erW 79 (89)
T 2lw1_A 65 MAAAEQELEQAFERW 79 (89)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333344444
No 51
>4dck_A Sodium channel protein type 5 subunit alpha; IQ-motif, EF-hand, voltage-gated sodium channel regulation, CTD binds to FGF13 and CAM. CAM binds to Ca2+.; 2.20A {Homo sapiens} PDB: 2kbi_A
Probab=59.74 E-value=7.9 Score=36.99 Aligned_cols=23 Identities=30% Similarity=0.504 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHh
Q 003826 519 RHRAAVVIQRQIKSRVARQKLKN 541 (793)
Q Consensus 519 ~~~AAi~IQ~~~R~~~~R~~~~~ 541 (793)
...||++||.+||.|+.|+.+..
T Consensus 129 e~~aA~~IQra~R~~~~r~~~~~ 151 (168)
T 4dck_A 129 EEVSAMVIQRAFRRHLLQRSLKH 151 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccccc
Confidence 34689999999999888766544
No 52
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=58.58 E-value=1e+02 Score=27.70 Aligned_cols=53 Identities=15% Similarity=0.130 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 595 VLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSLSIA 651 (793)
Q Consensus 595 ~~~~e~~l~~~e~e~~~L~~~L~~~e~~~~ele~k~~~~ee~~qkq~~~lq~~L~a~ 651 (793)
...+...-..++..+.++..++...+....++....+.++... ..|..++...
T Consensus 71 ~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~----~~Lk~~led~ 123 (129)
T 2fxo_A 71 CDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDEC----SELKRDIDDL 123 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
Confidence 3333333344555555555555555555555555555554443 4444444443
No 53
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=58.19 E-value=1e+02 Score=31.18 Aligned_cols=63 Identities=11% Similarity=0.147 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 583 VKASFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQ 645 (793)
Q Consensus 583 ~~~~~l~~l~~r~~~~e~~l~~~e~e~~~L~~~L~~~e~~~~ele~k~~~~ee~~qkq~~~lq 645 (793)
.+......+..++.++..++..++.+...++..+...+....+.........+..+++...+.
T Consensus 101 ~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~e~~~e~~~l~ 163 (256)
T 3na7_A 101 IAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVENEVKNIKETQQIIF 163 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444444444444444443333333333333
No 54
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=56.88 E-value=1.1e+02 Score=27.28 Aligned_cols=37 Identities=19% Similarity=0.201 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 601 ALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVW 637 (793)
Q Consensus 601 ~l~~~e~e~~~L~~~L~~~e~~~~ele~k~~~~ee~~ 637 (793)
.-..+|.++..|+..+....-.+.++|.++.++.+++
T Consensus 63 ~r~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl 99 (119)
T 3ol1_A 63 QREEAENTLQSFRQDVDNASLARLDLERKVESLQEEI 99 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHH
Confidence 3455677888888888888888888888888888876
No 55
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=56.83 E-value=57 Score=27.50 Aligned_cols=32 Identities=22% Similarity=0.343 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 596 LKAEAALREKEEENDILHQRLQQYESRWSEYE 627 (793)
Q Consensus 596 ~~~e~~l~~~e~e~~~L~~~L~~~e~~~~ele 627 (793)
.+++.++..++.||..|+.++++++.+...+.
T Consensus 39 ~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr 70 (87)
T 1hjb_A 39 LETQHKVLELTAENERLQKKVEQLSRELSTLR 70 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555566666666666665555544443
No 56
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=56.36 E-value=61 Score=27.21 Aligned_cols=19 Identities=11% Similarity=0.286 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 003826 584 KASFLAELQRRVLKAEAAL 602 (793)
Q Consensus 584 ~~~~l~~l~~r~~~~e~~l 602 (793)
++..+..|+.++..++..+
T Consensus 27 le~~Ie~LE~~i~~le~~l 45 (89)
T 2lw1_A 27 LPQLLEDLEAKLEALQTQV 45 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444433
No 57
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=55.98 E-value=86 Score=25.92 Aligned_cols=35 Identities=17% Similarity=0.316 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 603 REKEEENDILHQRLQQYESRWSEYEQKMKSMEEVW 637 (793)
Q Consensus 603 ~~~e~e~~~L~~~L~~~e~~~~ele~k~~~~ee~~ 637 (793)
......|...+.+|+..+.++.++...|..+++++
T Consensus 34 s~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~ 68 (81)
T 1wt6_A 34 EAIRTDNQNFASQLREAEARNRDLEAHVRQLQERM 68 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444445555555555555555444444333
No 58
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=54.36 E-value=1.1e+02 Score=26.86 Aligned_cols=65 Identities=23% Similarity=0.191 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 581 VLVKASFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSLS 649 (793)
Q Consensus 581 ~~~~~~~l~~l~~r~~~~e~~l~~~e~e~~~L~~~L~~~e~~~~ele~k~~~~ee~~qkq~~~lq~~L~ 649 (793)
+..+...+..++.....+...++.+|..|..|.+.-.....-..++|.++....|.- .-|+.+|.
T Consensus 37 ~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n~aiErn----alLE~El~ 101 (111)
T 2v66_B 37 VSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLNQAIERN----AFLESELD 101 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHHHHHHHHHH----HHHHHHHH
Confidence 334445555555556666666777777777777766666666677777776655443 44444444
No 59
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=54.23 E-value=1.4e+02 Score=27.87 Aligned_cols=74 Identities=19% Similarity=0.069 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Q 003826 584 KASFLAELQRRVLKAEAALREKEEENDILHQRLQQY--------ESRWSEYEQKMKSMEEVW---QKQMRSLQSSLSIAK 652 (793)
Q Consensus 584 ~~~~l~~l~~r~~~~e~~l~~~e~e~~~L~~~L~~~--------e~~~~ele~k~~~~ee~~---qkq~~~lq~~L~a~~ 652 (793)
+...+.+.+.+...++......+.|+++|.-.|=.. ......++.+...+++.+ ...+.++|.+|...+
T Consensus 63 L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~~lq~ql~~LK 142 (154)
T 2ocy_A 63 LREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLREKDTLLDTLTLQLKNLK 142 (154)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444555555556666666665544221 222233333333333332 234466777777776
Q ss_pred Hhccc
Q 003826 653 KSLAI 657 (793)
Q Consensus 653 ~sla~ 657 (793)
.-+..
T Consensus 143 ~v~~~ 147 (154)
T 2ocy_A 143 KVMHS 147 (154)
T ss_dssp HTTSC
T ss_pred HHHHH
Confidence 66544
No 60
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=54.18 E-value=92 Score=25.75 Aligned_cols=54 Identities=13% Similarity=0.158 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 591 LQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSL 644 (793)
Q Consensus 591 l~~r~~~~e~~l~~~e~e~~~L~~~L~~~e~~~~ele~k~~~~ee~~qkq~~~l 644 (793)
+..++.+++.+-..+++.+..|+.+|+....+..-....++.+-+.+.-.+.+|
T Consensus 11 ~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL 64 (79)
T 3cvf_A 11 TQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFEL 64 (79)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 334555666666777777777777777777666666666666666655444433
No 61
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=52.98 E-value=72 Score=25.05 Aligned_cols=29 Identities=17% Similarity=0.234 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 596 LKAEAALREKEEENDILHQRLQQYESRWS 624 (793)
Q Consensus 596 ~~~e~~l~~~e~e~~~L~~~L~~~e~~~~ 624 (793)
..++.++..++.+|.+|..++..++.+..
T Consensus 26 ~~le~~~~~L~~~N~~L~~~i~~L~~E~~ 54 (63)
T 1ci6_A 26 EALTGECKELEKKNEALKERADSLAKEIQ 54 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555555544444444433
No 62
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=52.48 E-value=29 Score=28.05 Aligned_cols=36 Identities=28% Similarity=0.369 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 588 LAELQRRVLKAEAALREKEEENDILHQRLQQYESRW 623 (793)
Q Consensus 588 l~~l~~r~~~~e~~l~~~e~e~~~L~~~L~~~e~~~ 623 (793)
+..|+.++..++.....+..+|..|+.++..+..+.
T Consensus 31 i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El 66 (70)
T 1gd2_E 31 LKALETQVVTLKELHSSTTLENDQLRQKVRQLEEEL 66 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444455555555554444443
No 63
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=51.38 E-value=56 Score=25.36 Aligned_cols=30 Identities=10% Similarity=0.085 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 596 LKAEAALREKEEENDILHQRLQQYESRWSE 625 (793)
Q Consensus 596 ~~~e~~l~~~e~e~~~L~~~L~~~e~~~~e 625 (793)
..++.++..++.+|..|..++..++.+...
T Consensus 25 ~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~ 54 (61)
T 1t2k_D 25 QSLEKKAEDLSSLNGQLQSEVTLLRNEVAQ 54 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555555555444444433
No 64
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=51.28 E-value=96 Score=25.62 Aligned_cols=34 Identities=18% Similarity=0.227 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 588 LAELQRRVLKAEAALREKEEENDILHQRLQQYES 621 (793)
Q Consensus 588 l~~l~~r~~~~e~~l~~~e~e~~~L~~~L~~~e~ 621 (793)
+.++.....+.+..+.+-.+|+..|+++|..-+.
T Consensus 35 v~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ 68 (81)
T 3qh9_A 35 VEELENERNQYEWKLKATKAEVAQLQEQVALKDA 68 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHH
Confidence 3334444444444444444555555555544333
No 65
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=51.13 E-value=81 Score=27.87 Aligned_cols=52 Identities=23% Similarity=0.145 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 003826 606 EEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSLSIAKKSLAI 657 (793)
Q Consensus 606 e~e~~~L~~~L~~~e~~~~ele~k~~~~ee~~qkq~~~lq~~L~a~~~sla~ 657 (793)
..++..|....+..|....++...........+.+|..|..+.+.....|..
T Consensus 44 k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~vq~qL~~Lt~~Re~V~~eL~r 95 (112)
T 1x79_B 44 SHQISALVLRAQASEILLEELQQGLSQAKRDVQEQMAVLMQSREQVSEELVR 95 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788888888888888888888888888888888887777777666543
No 66
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=50.24 E-value=68 Score=25.12 Aligned_cols=29 Identities=14% Similarity=0.125 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 596 LKAEAALREKEEENDILHQRLQQYESRWS 624 (793)
Q Consensus 596 ~~~e~~l~~~e~e~~~L~~~L~~~e~~~~ 624 (793)
..++.++..++.+|..|..++..++.+..
T Consensus 26 ~~Le~~v~~L~~~n~~L~~ei~~L~~e~~ 54 (63)
T 2wt7_A 26 DTLQAETDQLEDEKSALQTEIANLLKEKE 54 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555555544444433
No 67
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=49.52 E-value=1.1e+02 Score=25.28 Aligned_cols=34 Identities=18% Similarity=0.234 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 604 EKEEENDILHQRLQQYESRWSEYEQKMKSMEEVW 637 (793)
Q Consensus 604 ~~e~e~~~L~~~L~~~e~~~~ele~k~~~~ee~~ 637 (793)
...+|+...+..+...+.+..|.+.+...+.+++
T Consensus 28 ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~ 61 (81)
T 1wt6_A 28 SLSREMEAIRTDNQNFASQLREAEARNRDLEAHV 61 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666666666666665544
No 68
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=49.10 E-value=58 Score=31.35 Aligned_cols=44 Identities=16% Similarity=0.229 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 588 LAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMK 631 (793)
Q Consensus 588 l~~l~~r~~~~e~~l~~~e~e~~~L~~~L~~~e~~~~ele~k~~ 631 (793)
+..|+.+...+...+..+..|+..|+++++.++.+...++....
T Consensus 22 V~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~~ 65 (190)
T 4emc_A 22 VANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQTS 65 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHH
Confidence 34444444555555555555555555555555555544444443
No 69
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=49.09 E-value=95 Score=35.18 Aligned_cols=46 Identities=15% Similarity=0.138 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 591 LQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEV 636 (793)
Q Consensus 591 l~~r~~~~e~~l~~~e~e~~~L~~~L~~~e~~~~ele~k~~~~ee~ 636 (793)
+.+...+.++++.++.++.+.++++..+++++..+.+++...+.++
T Consensus 521 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e 566 (597)
T 3oja_B 521 KLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQE 566 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHH
Confidence 3333444444444444444444444444444444444444444433
No 70
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=48.81 E-value=1.8e+02 Score=28.08 Aligned_cols=70 Identities=26% Similarity=0.213 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 003826 581 VLVKASFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSLSIAKKSL 655 (793)
Q Consensus 581 ~~~~~~~l~~l~~r~~~~e~~l~~~e~e~~~L~~~L~~~e~~~~ele~k~~~~ee~~qkq~~~lq~~L~a~~~sl 655 (793)
+..+...+..++.....+...++.+|..|..|.........-..+++.++....|.. .-|+.+|.. +..|
T Consensus 90 ~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~----alLE~El~E-Ke~l 159 (189)
T 2v71_A 90 VSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERN----AFLESELDE-KESL 159 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH-HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHH----HHHHHHHHH-HHHH
Confidence 444455566666666666777777777777777777777777777777777666554 556666664 4444
No 71
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=48.21 E-value=1.2e+02 Score=30.01 Aligned_cols=64 Identities=14% Similarity=0.081 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHh
Q 003826 591 LQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKS----MEEVWQKQMRSLQSSLSIAKKS 654 (793)
Q Consensus 591 l~~r~~~~e~~l~~~e~e~~~L~~~L~~~e~~~~ele~k~~~----~ee~~qkq~~~lq~~L~a~~~s 654 (793)
++.+...+..+...++.+...|..+++++.....+.|..+-. +--+.+..+.+++..|.+..++
T Consensus 137 ~~~~~~~L~~e~~~l~~~~~~l~~qlE~~v~~K~~~E~~L~~KF~~lLNeKK~KIR~lq~~Ll~~~~~ 204 (213)
T 1ik9_A 137 NQAKNEHLQKENERLLRDWNDVQGRFEKAVSAKEALETDLYKRFILVLNEKKTKIRSLHNKLLNAAQE 204 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 444555566666777777777888888888888777765532 3334446677888666544443
No 72
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=48.16 E-value=1.1e+02 Score=29.46 Aligned_cols=50 Identities=12% Similarity=0.225 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 588 LAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVW 637 (793)
Q Consensus 588 l~~l~~r~~~~e~~l~~~e~e~~~L~~~L~~~e~~~~ele~k~~~~ee~~ 637 (793)
...++.++..+...+..+..||..|.++|+....+++-++.++.++++..
T Consensus 8 K~~~q~ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~ 57 (190)
T 4emc_A 8 KNSVKQQIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQV 57 (190)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34455556666666777888888888888877777777777777766655
No 73
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=47.89 E-value=6.8e+02 Score=34.75 Aligned_cols=35 Identities=17% Similarity=0.284 Sum_probs=21.9
Q ss_pred HHHHHHHhHHHHHhHHHHhhHHHHHH-HhhhcCCcc
Q 003826 740 ELRRLKQMFEAWKKDYGSRLRETKVI-LNKLGSEEG 774 (793)
Q Consensus 740 el~~lk~~f~~wkk~~~~rl~~~~~~-~~~~~~~~~ 774 (793)
||.+-|...=.=--+||.+|++..-. |+.|..++|
T Consensus 2323 eLE~~r~~Li~~~~~~k~~L~~LEd~lL~~Ls~s~G 2358 (3245)
T 3vkg_A 2323 DTHKKRSDLLKIQGEFQVKLRILEKSLLNALSQASG 2358 (3245)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHTTTHHHHHHHHTTSS
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 55555655555556777777776554 666665554
No 74
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=46.09 E-value=1.3e+02 Score=25.00 Aligned_cols=32 Identities=25% Similarity=0.367 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 599 EAALREKEEENDILHQRLQQYESRWSEYEQKM 630 (793)
Q Consensus 599 e~~l~~~e~e~~~L~~~L~~~e~~~~ele~k~ 630 (793)
+-++.+++++|..|.++.+........+....
T Consensus 26 qmEieELKekN~~L~~e~~e~~~~~~~L~~en 57 (81)
T 2jee_A 26 QMEIEELKEKNNSLSQEVQNAQHQREELEREN 57 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 33444445555555555554444444444333
No 75
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=45.45 E-value=1.3e+02 Score=25.91 Aligned_cols=22 Identities=14% Similarity=0.075 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHhccc
Q 003826 636 VWQKQMRSLQSSLSIAKKSLAI 657 (793)
Q Consensus 636 ~~qkq~~~lq~~L~a~~~sla~ 657 (793)
..++.+..|+.+++..+..+..
T Consensus 72 ~~~~~~e~Lq~E~erLr~~v~~ 93 (100)
T 1go4_E 72 RLREDHSQLQAECERLRGLLRA 93 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677778777777776654
No 76
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=44.27 E-value=66 Score=25.97 Aligned_cols=17 Identities=12% Similarity=0.081 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 003826 594 RVLKAEAALREKEEEND 610 (793)
Q Consensus 594 r~~~~e~~l~~~e~e~~ 610 (793)
.+.+++..+..++..+.
T Consensus 30 ~i~~LE~~v~~le~~~~ 46 (70)
T 1gd2_E 30 HLKALETQVVTLKELHS 46 (70)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 77
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=44.19 E-value=54 Score=35.72 Aligned_cols=56 Identities=16% Similarity=0.230 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 003826 596 LKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSLSIAKKSL 655 (793)
Q Consensus 596 ~~~e~~l~~~e~e~~~L~~~L~~~e~~~~ele~k~~~~ee~~qkq~~~lq~~L~a~~~sl 655 (793)
..++.++..++++..+|+++++.++.+..++++++..++... ..|..++...+...
T Consensus 6 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r----r~l~n~~~elkgnI 61 (403)
T 4etp_A 6 AALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVR----RTLHNELQELRGNI 61 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHCSE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHcCCCe
Confidence 344555666666666666666666666666666666555544 44566666665544
No 78
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=43.92 E-value=1.6e+02 Score=25.39 Aligned_cols=37 Identities=16% Similarity=0.191 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 596 LKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKS 632 (793)
Q Consensus 596 ~~~e~~l~~~e~e~~~L~~~L~~~e~~~~ele~k~~~ 632 (793)
..++.+...++.++..|+..++.++.....++.++..
T Consensus 33 k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~e 69 (101)
T 3u1c_A 33 KAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHK 69 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444555555555555554444444444433
No 79
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=43.21 E-value=62 Score=26.74 Aligned_cols=39 Identities=10% Similarity=0.269 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 580 EVLVKASFLAELQRRVLKAEAALREKEEENDILHQRLQQ 618 (793)
Q Consensus 580 ~~~~~~~~l~~l~~r~~~~e~~l~~~e~e~~~L~~~L~~ 618 (793)
.+...-.++..|+.+..+++.++..+..++..|+.+|..
T Consensus 41 iL~~Ai~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~ 79 (83)
T 1nkp_B 41 ILDKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRA 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445666677766666666666666666666555543
No 80
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=42.99 E-value=1.3e+02 Score=24.33 Aligned_cols=52 Identities=17% Similarity=0.303 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 593 RRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSL 644 (793)
Q Consensus 593 ~r~~~~e~~l~~~e~e~~~L~~~L~~~e~~~~ele~k~~~~ee~~qkq~~~l 644 (793)
.++.+++.+-..+++.+..|+.+|+....+..-....++.+-+.+.-.+.+|
T Consensus 7 ~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL 58 (72)
T 3cve_A 7 MKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFEL 58 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 3455666667777777777777777777666666666666666655444443
No 81
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=42.94 E-value=1.2e+02 Score=24.76 Aligned_cols=41 Identities=24% Similarity=0.268 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 597 KAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVW 637 (793)
Q Consensus 597 ~~e~~l~~~e~e~~~L~~~L~~~e~~~~ele~k~~~~ee~~ 637 (793)
.+-+++.++..|...|+.++...+.-...++.++..+|+++
T Consensus 34 DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeEl 74 (77)
T 2w83_C 34 DLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEEL 74 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555556666666666666666666666666555
No 82
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=42.76 E-value=89 Score=25.97 Aligned_cols=16 Identities=19% Similarity=0.241 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHhcccc
Q 003826 643 SLQSSLSIAKKSLAID 658 (793)
Q Consensus 643 ~lq~~L~a~~~sla~~ 658 (793)
.|..+++.-++=|..+
T Consensus 65 ~Ld~EIatYRkLLEGE 80 (84)
T 1gk4_A 65 ALDIEIATYRKLLEGE 80 (84)
T ss_dssp HHHHHHHHHHHHHTC-
T ss_pred hhHHHHHHHHHHHcCC
Confidence 4445555555555443
No 83
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=42.44 E-value=1.9e+02 Score=25.91 Aligned_cols=22 Identities=9% Similarity=0.294 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 003826 620 ESRWSEYEQKMKSMEEVWQKQM 641 (793)
Q Consensus 620 e~~~~ele~k~~~~ee~~qkq~ 641 (793)
......+|..+..+...+..++
T Consensus 81 q~~i~~lE~eL~~~r~e~~~ql 102 (129)
T 3tnu_B 81 RNKLAELEEALQKAKQDMARLL 102 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHH
Confidence 3333444444444444443333
No 84
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=42.41 E-value=2.1e+02 Score=31.19 Aligned_cols=10 Identities=30% Similarity=0.318 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 003826 590 ELQRRVLKAE 599 (793)
Q Consensus 590 ~l~~r~~~~e 599 (793)
+.+....+++
T Consensus 408 ~~~~~~~~~~ 417 (471)
T 3mq9_A 408 EAQKGFQDVE 417 (471)
T ss_dssp HHHHHHHHHH
T ss_pred HHhhhHHHHH
Confidence 3333333333
No 85
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=41.51 E-value=63 Score=35.19 Aligned_cols=43 Identities=14% Similarity=0.156 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 584 KASFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEY 626 (793)
Q Consensus 584 ~~~~l~~l~~r~~~~e~~l~~~e~e~~~L~~~L~~~e~~~~el 626 (793)
+...+..++++..+++..+.+++.++.++++++.+.+..+..+
T Consensus 8 ~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l 50 (403)
T 4etp_A 8 LKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTL 50 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555555555555555555444444433
No 86
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=41.43 E-value=60 Score=21.16 Aligned_cols=24 Identities=33% Similarity=0.386 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 597 KAEAALREKEEENDILHQRLQQYE 620 (793)
Q Consensus 597 ~~e~~l~~~e~e~~~L~~~L~~~e 620 (793)
+++.++.+.+.||-.|.++..+++
T Consensus 5 qlekevaqaeaenyqleqevaqle 28 (33)
T 1fmh_A 5 QLEKEVAQAEAENYQLEQEVAQLE 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHH
Confidence 444445555555555555544443
No 87
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=41.05 E-value=1.2e+02 Score=25.45 Aligned_cols=41 Identities=12% Similarity=0.114 Sum_probs=26.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 579 DEVLVKASFLAELQRRVLKAEAALREKEEENDILHQRLQQY 619 (793)
Q Consensus 579 ~~~~~~~~~l~~l~~r~~~~e~~l~~~e~e~~~L~~~L~~~ 619 (793)
..+.....++..|+.+...+..+...+..++..|+.+|+++
T Consensus 45 ~iL~~A~~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L 85 (88)
T 1nkp_A 45 VILKKATAYILSVQAEEQKLISEEDLLRKRREQLKHKLEQL 85 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445566777777777777776666667777766666654
No 88
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=40.90 E-value=1e+02 Score=23.47 Aligned_cols=39 Identities=13% Similarity=0.301 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 595 VLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSM 633 (793)
Q Consensus 595 ~~~~e~~l~~~e~e~~~L~~~L~~~e~~~~ele~k~~~~ 633 (793)
+-.+.-++.++.+++..|.+.+++.++.+.++|.-+..+
T Consensus 12 VYaLkDqV~eL~qe~k~m~k~lEeEqkARk~LE~~vrk~ 50 (56)
T 2w6b_A 12 VYALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKV 50 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666777777777777777777777777655544
No 89
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=40.85 E-value=71 Score=26.37 Aligned_cols=39 Identities=15% Similarity=0.166 Sum_probs=24.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 579 DEVLVKASFLAELQRRVLKAEAALREKEEENDILHQRLQ 617 (793)
Q Consensus 579 ~~~~~~~~~l~~l~~r~~~~e~~l~~~e~e~~~L~~~L~ 617 (793)
..+.....++..|+.+..++..+...+..++..|+.+|+
T Consensus 40 ~iL~kA~~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~L~ 78 (80)
T 1nlw_A 40 SLLTKAKLHIKKLEDSDRKAVHQIDQLQREQRHLKRQLE 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555666777776666666666666666666665554
No 90
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=38.94 E-value=1.2e+02 Score=22.80 Aligned_cols=21 Identities=24% Similarity=0.284 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 003826 599 EAALREKEEENDILHQRLQQY 619 (793)
Q Consensus 599 e~~l~~~e~e~~~L~~~L~~~ 619 (793)
...+..+...|..|..-|+..
T Consensus 15 ~~~l~~L~~rN~rL~~~L~~A 35 (51)
T 3m91_A 15 EARIDSLAARNSKLMETLKEA 35 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444333
No 91
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=38.54 E-value=2.5e+02 Score=26.21 Aligned_cols=51 Identities=18% Similarity=0.205 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 588 LAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQ 638 (793)
Q Consensus 588 l~~l~~r~~~~e~~l~~~e~e~~~L~~~L~~~e~~~~ele~k~~~~ee~~q 638 (793)
+..|..++.+++.+....+..+..|+..+..++..+.....+...+.+++.
T Consensus 79 Ik~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd 129 (155)
T 2efr_A 79 IKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMK 129 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444445555555555555444444444444444443
No 92
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=38.53 E-value=1.4e+02 Score=25.66 Aligned_cols=32 Identities=22% Similarity=0.115 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 585 ASFLAELQRRVLKAEAALREKEEENDILHQRL 616 (793)
Q Consensus 585 ~~~l~~l~~r~~~~e~~l~~~e~e~~~L~~~L 616 (793)
...+.+.+.+...++.....++.|+.+|.-.|
T Consensus 32 ~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasL 63 (97)
T 2eqb_B 32 REDIAKENELRTKAEEEADKLNKEVEDLTASL 63 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444444555555554444
No 93
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=38.44 E-value=1.7e+02 Score=24.36 Aligned_cols=36 Identities=19% Similarity=0.208 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 602 LREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVW 637 (793)
Q Consensus 602 l~~~e~e~~~L~~~L~~~e~~~~ele~k~~~~ee~~ 637 (793)
-...|.+...|++.+....-.+.++|.++.++.+++
T Consensus 44 R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl 79 (86)
T 3swk_A 44 REEAENTLQSFRQDVDNASLARLDLERKVESLQEEI 79 (86)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777777777777777777777777776654
No 94
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=37.95 E-value=92 Score=25.66 Aligned_cols=31 Identities=23% Similarity=0.350 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 596 LKAEAALREKEEENDILHQRLQQYESRWSEY 626 (793)
Q Consensus 596 ~~~e~~l~~~e~e~~~L~~~L~~~e~~~~el 626 (793)
.+++.++..++.||..|+.+++.++.+...+
T Consensus 39 ~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~L 69 (78)
T 1gu4_A 39 LETQHKVLELTAENERLQKKVEQLSRELSTL 69 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666666666655554433
No 95
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=37.58 E-value=1.7e+02 Score=23.98 Aligned_cols=26 Identities=23% Similarity=0.387 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 604 EKEEENDILHQRLQQYESRWSEYEQK 629 (793)
Q Consensus 604 ~~e~e~~~L~~~L~~~e~~~~ele~k 629 (793)
.++.++..|+..++.++.....++.+
T Consensus 38 ~~E~ev~~L~kKiq~lE~eld~~ee~ 63 (81)
T 1ic2_A 38 QLEDELVALQKKLKGTEDELDKYSES 63 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 96
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=35.74 E-value=35 Score=26.00 Aligned_cols=23 Identities=22% Similarity=0.280 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 003826 594 RVLKAEAALREKEEENDILHQRL 616 (793)
Q Consensus 594 r~~~~e~~l~~~e~e~~~L~~~L 616 (793)
...+++.++..+.+++++|..+|
T Consensus 27 E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 27 ELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333444444443333
No 97
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=35.66 E-value=56 Score=25.50 Aligned_cols=26 Identities=12% Similarity=0.198 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 597 KAEAALREKEEENDILHQRLQQYESR 622 (793)
Q Consensus 597 ~~e~~l~~~e~e~~~L~~~L~~~e~~ 622 (793)
.++.++..++.+|..|..++..++.+
T Consensus 26 ~Le~~v~~L~~~n~~L~~~v~~L~~e 51 (62)
T 1jnm_A 26 RLEEKVKTLKAQNSELASTANMLREQ 51 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444433
No 98
>2h5n_A Hypothetical protein PG_1108; SAD, MCSG,PSI, structural genomics, PR structure initiative; 2.01A {Porphyromonas gingivalis} SCOP: a.287.1.2
Probab=35.58 E-value=20 Score=32.69 Aligned_cols=80 Identities=6% Similarity=0.117 Sum_probs=47.1
Q ss_pred cCCcccHHHHHHHHHHHhhcCCCHHHHHHHHHHHHH------HHHhcCeeE-----------EeeCCCCceeecCchHHH
Q 003826 17 INGVDDAEQFRIVVEALDIVHVSKEDQESVFAMLAA------VLWLGNVSF-----------TVIDNENHVEPVADEGLI 79 (793)
Q Consensus 17 ~~~~dD~~~f~~~~~Al~~lg~~~~~~~~if~ilaa------ILhLGNi~F-----------~~~~~~~~~~~~~~~~l~ 79 (793)
.||.=+..+-+.+...+..+|+++++...++...-. +-.+.++.. .....++.........+.
T Consensus 31 ADG~v~~~E~~~l~~~l~~lgl~~~e~~~l~~~~~~~~~~~~~~~~~~~~~e~r~~ll~~L~~IA~ADG~i~~~E~~lLr 110 (133)
T 2h5n_A 31 ADGKIKPAEIAVMTREFMRFGILQDQVDLLLKASDSIEASQAVALIARMDEERKKYVASYLGVIMASDGDIDDNELALWT 110 (133)
T ss_dssp TTSCCCHHHHHHHHHHHGGGTCCHHHHHHHHHHHTTSCHHHHHHHHHTSCHHHHHHHHHHHHHHSCBTTBCCHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHhccHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCCCCHHHHHHHH
Confidence 355555677777777777789998877777665420 111122210 000112223333445799
Q ss_pred HHHHHhCCCHHHHHHHH
Q 003826 80 TVAKLIGCDIGELKLAL 96 (793)
Q Consensus 80 ~~a~LLGv~~~~L~~~L 96 (793)
.+|.+||+++.++..+.
T Consensus 111 ~ia~~Lgls~~d~~~~~ 127 (133)
T 2h5n_A 111 LISTLCGLPTMTVMEAI 127 (133)
T ss_dssp HHHHHHTCCCCCHHHHH
T ss_pred HHHHHcCCCHHHHHHHH
Confidence 99999999998885543
No 99
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=35.52 E-value=2.3e+02 Score=24.84 Aligned_cols=13 Identities=38% Similarity=0.470 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHH
Q 003826 633 MEEVWQKQMRSLQ 645 (793)
Q Consensus 633 ~ee~~qkq~~~lq 645 (793)
..++++.+...|+
T Consensus 91 eKe~L~~ql~~Lq 103 (110)
T 2v4h_A 91 KKEYLQEQLEQLQ 103 (110)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 100
>3dvk_B Voltage-dependent R-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.30A {Rattus norvegicus} PDB: 3dvm_B
Probab=35.20 E-value=15 Score=23.01 Aligned_cols=16 Identities=25% Similarity=0.227 Sum_probs=12.5
Q ss_pred HHHHHHHHHhhhHHHH
Q 003826 521 RAAVVIQRQIKSRVAR 536 (793)
Q Consensus 521 ~AAi~IQ~~~R~~~~R 536 (793)
-|+..||.+||.+..|
T Consensus 7 YA~llI~d~~r~~k~r 22 (23)
T 3dvk_B 7 YAAMMIMDYYKQSKVK 22 (26)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcc
Confidence 4788899998887654
No 101
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=34.78 E-value=55 Score=23.84 Aligned_cols=31 Identities=16% Similarity=0.238 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 587 FLAELQRRVLKAEAALREKEEENDILHQRLQ 617 (793)
Q Consensus 587 ~l~~l~~r~~~~e~~l~~~e~e~~~L~~~L~ 617 (793)
.+.++..+-..+++++..+|.+++.|++.++
T Consensus 10 lvsel~~r~e~LE~Ri~~LE~KLd~L~~~l~ 40 (43)
T 2pnv_A 10 MISDLNERSEDFEKRIVTLETKLETLIGSIH 40 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555443
No 102
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=34.18 E-value=1.1e+02 Score=25.16 Aligned_cols=25 Identities=24% Similarity=0.302 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 594 RVLKAEAALREKEEENDILHQRLQQ 618 (793)
Q Consensus 594 r~~~~e~~l~~~e~e~~~L~~~L~~ 618 (793)
|+.++|.++.=.++-+++|-+.+..
T Consensus 15 Ri~~LE~klAfqE~tIeeLn~~v~~ 39 (78)
T 3efg_A 15 RLVELETRLSFQEQALTELSEALAD 39 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444443333333333333333
No 103
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=33.83 E-value=35 Score=29.31 Aligned_cols=15 Identities=27% Similarity=0.226 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHhccc
Q 003826 643 SLQSSLSIAKKSLAI 657 (793)
Q Consensus 643 ~lq~~L~a~~~sla~ 657 (793)
.|..+++.-++-|..
T Consensus 76 ~Le~EIatYrkLLEG 90 (95)
T 3mov_A 76 ALDMEISAYRKLLEG 90 (95)
T ss_dssp HHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHcc
Confidence 344445555555543
No 104
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=33.53 E-value=2.4e+02 Score=24.63 Aligned_cols=16 Identities=19% Similarity=0.260 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHh
Q 003826 639 KQMRSLQSSLSIAKKS 654 (793)
Q Consensus 639 kq~~~lq~~L~a~~~s 654 (793)
.....|+.+++..+..
T Consensus 90 ~eKe~L~~ql~~Lq~q 105 (110)
T 2v4h_A 90 EKKEYLQEQLEQLQRE 105 (110)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH
Confidence 4445666666655543
No 105
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=33.48 E-value=2e+02 Score=39.81 Aligned_cols=22 Identities=23% Similarity=0.587 Sum_probs=10.9
Q ss_pred HHHHHHHhHHHHHhHHHHhhHH
Q 003826 740 ELRRLKQMFEAWKKDYGSRLRE 761 (793)
Q Consensus 740 el~~lk~~f~~wkk~~~~rl~~ 761 (793)
+|..|-.+.+.=|.+|.+..+|
T Consensus 2036 ~L~~le~~l~~L~~~~~~~~~e 2057 (3245)
T 3vkg_A 2036 TITALEKSIATYKEEYATLIRE 2057 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555444443
No 106
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=33.38 E-value=3e+02 Score=25.64 Aligned_cols=52 Identities=25% Similarity=0.275 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 580 EVLVKASFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMK 631 (793)
Q Consensus 580 ~~~~~~~~l~~l~~r~~~~e~~l~~~e~e~~~L~~~L~~~e~~~~ele~k~~ 631 (793)
.|..+...+.....|...++..+..++.++..|...|...+.....+...|.
T Consensus 78 qIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd 129 (155)
T 2efr_A 78 EIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMK 129 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555555555555555555544444444443333
No 107
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=32.95 E-value=2.5e+02 Score=24.50 Aligned_cols=51 Identities=16% Similarity=0.227 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 589 AELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQK 639 (793)
Q Consensus 589 ~~l~~r~~~~e~~l~~~e~e~~~L~~~L~~~e~~~~ele~k~~~~ee~~qk 639 (793)
..++..+.....++.++..++.+|+..++.+++++.-|=.|+...|-..|.
T Consensus 7 ~al~~eL~~~~~ei~~L~~ei~eLk~~ve~lEkERDFYF~KLRdIEiLcQe 57 (106)
T 4e61_A 7 VAIQAELTKSQETIGSLNEEIEQYKGTVSTLEIEREFYFNKLRDIEILVHT 57 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666677777777778888888888888887777777777766543
No 108
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=32.19 E-value=39 Score=21.24 Aligned_cols=21 Identities=19% Similarity=0.240 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 003826 604 EKEEENDILHQRLQQYESRWS 624 (793)
Q Consensus 604 ~~e~e~~~L~~~L~~~e~~~~ 624 (793)
.+.++|+.|++++..++-++.
T Consensus 4 rlkqknarlkqeiaaleyeia 24 (28)
T 3ra3_B 4 RLKQKNARLKQEIAALEYEIA 24 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHHH
Confidence 344555556666555554443
No 109
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=31.58 E-value=2.3e+02 Score=23.64 Aligned_cols=42 Identities=19% Similarity=0.181 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 592 QRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSM 633 (793)
Q Consensus 592 ~~r~~~~e~~l~~~e~e~~~L~~~L~~~e~~~~ele~k~~~~ 633 (793)
......+..++..+...+..++.+.+..-..+.+.|.-+..+
T Consensus 13 ~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~L 54 (86)
T 3swk_A 13 TNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSF 54 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344445555555555566666666555566666555443
No 110
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=31.42 E-value=2.5e+02 Score=24.07 Aligned_cols=39 Identities=26% Similarity=0.275 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 594 RVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKS 632 (793)
Q Consensus 594 r~~~~e~~l~~~e~e~~~L~~~L~~~e~~~~ele~k~~~ 632 (793)
+...++..+..++.+...+..++..+..++.-+|.-+..
T Consensus 24 rae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~ 62 (101)
T 3u1c_A 24 RAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQ 62 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444333333333
No 111
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=31.17 E-value=1.7e+02 Score=22.05 Aligned_cols=31 Identities=19% Similarity=0.201 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 604 EKEEENDILHQRLQQYESRWSEYEQKMKSME 634 (793)
Q Consensus 604 ~~e~e~~~L~~~L~~~e~~~~ele~k~~~~e 634 (793)
++..++..|..++..+..-+.+...++..+.
T Consensus 13 ~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lk 43 (51)
T 3m91_A 13 QLEARIDSLAARNSKLMETLKEARQQLLALR 43 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444333333333333
No 112
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=31.10 E-value=55 Score=27.42 Aligned_cols=15 Identities=20% Similarity=0.173 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHhccc
Q 003826 643 SLQSSLSIAKKSLAI 657 (793)
Q Consensus 643 ~lq~~L~a~~~sla~ 657 (793)
.|..+++.-++=|..
T Consensus 67 ~Le~EIatYRkLLEG 81 (86)
T 1x8y_A 67 ALDMEIHAYRKLLEG 81 (86)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHcC
Confidence 344455555554443
No 113
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=30.88 E-value=1.7e+02 Score=21.87 Aligned_cols=38 Identities=24% Similarity=0.329 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 600 AALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVW 637 (793)
Q Consensus 600 ~~l~~~e~e~~~L~~~L~~~e~~~~ele~k~~~~ee~~ 637 (793)
..+..+..||.-|+++|+.--...+.+|..-..|.+.+
T Consensus 10 ~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevl 47 (54)
T 1deb_A 10 KQVEALKMENSNLRQELEDNSNHLTKLETEASNMKEVL 47 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHH
Confidence 34455666777777777776666666666666666555
No 114
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=30.74 E-value=1.9e+02 Score=22.54 Aligned_cols=31 Identities=13% Similarity=0.237 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 607 EENDILHQRLQQYESRWSEYEQKMKSMEEVW 637 (793)
Q Consensus 607 ~e~~~L~~~L~~~e~~~~ele~k~~~~ee~~ 637 (793)
++...|..+.+.++.++.+|+.++..++.+.
T Consensus 23 ~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~ 53 (63)
T 1ci6_A 23 AEQEALTGECKELEKKNEALKERADSLAKEI 53 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555555555444443
No 115
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=30.57 E-value=1.3e+02 Score=32.81 Aligned_cols=55 Identities=5% Similarity=0.079 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 003826 597 KAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSLSIAKKSL 655 (793)
Q Consensus 597 ~~e~~l~~~e~e~~~L~~~L~~~e~~~~ele~k~~~~ee~~qkq~~~lq~~L~a~~~sl 655 (793)
.++.++.++.+++.+|++++++.+.+..++++++...+.+. ..|...+...+...
T Consensus 7 ~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~r----r~l~n~~~~l~gnI 61 (412)
T 3u06_A 7 ALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMER----KELHNTVMDLRDNI 61 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHTCSE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhCCCE
Confidence 34455555555555555555555555555555554433333 44555555555443
No 116
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=30.42 E-value=1.1e+02 Score=19.86 Aligned_cols=25 Identities=32% Similarity=0.368 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 590 ELQRRVLKAEAALREKEEENDILHQ 614 (793)
Q Consensus 590 ~l~~r~~~~e~~l~~~e~e~~~L~~ 614 (793)
.|++.+.+++++.-++++|+..|..
T Consensus 5 qlekevaqaeaenyqleqevaqleh 29 (33)
T 1fmh_A 5 QLEKEVAQAEAENYQLEQEVAQLEH 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4455555666666666666665543
No 117
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=30.33 E-value=2.5e+02 Score=23.84 Aligned_cols=34 Identities=18% Similarity=0.247 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 587 FLAELQRRVLKAEAALREKEEENDILHQRLQQYE 620 (793)
Q Consensus 587 ~l~~l~~r~~~~e~~l~~~e~e~~~L~~~L~~~e 620 (793)
.+..+...-..+..++..++.+...+..+|..++
T Consensus 12 eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le 45 (96)
T 3q8t_A 12 ELKELALEEERLIQELEDVEKNRKVVAENLEKVQ 45 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3333443334444444444444444444444333
No 118
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=29.90 E-value=1.1e+02 Score=26.56 Aligned_cols=13 Identities=31% Similarity=0.317 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHhc
Q 003826 643 SLQSSLSIAKKSL 655 (793)
Q Consensus 643 ~lq~~L~a~~~sl 655 (793)
.|+..++..+..|
T Consensus 69 ~L~~~~~~lk~~L 81 (103)
T 4h22_A 69 ILQFQFAEVKEAL 81 (103)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 119
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=29.80 E-value=1.3e+02 Score=31.64 Aligned_cols=39 Identities=10% Similarity=0.040 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 595 VLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSM 633 (793)
Q Consensus 595 ~~~~e~~l~~~e~e~~~L~~~L~~~e~~~~ele~k~~~~ 633 (793)
+.+++..+...+.++..|+..+...+.++.+++.++..+
T Consensus 14 ~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l 52 (323)
T 1lwu_C 14 VRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDI 52 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444333333
No 120
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=29.37 E-value=1.6e+02 Score=24.20 Aligned_cols=14 Identities=7% Similarity=-0.071 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHhc
Q 003826 642 RSLQSSLSIAKKSL 655 (793)
Q Consensus 642 ~~lq~~L~a~~~sl 655 (793)
..|+.++......+
T Consensus 45 d~L~~ql~~L~~rl 58 (78)
T 3efg_A 45 ARNAELIRHLLEDL 58 (78)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHH
Confidence 33334444433333
No 121
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=28.85 E-value=3.4e+02 Score=30.28 Aligned_cols=9 Identities=0% Similarity=-0.164 Sum_probs=3.7
Q ss_pred hhhhHHHHH
Q 003826 702 ISRLAEEFD 710 (793)
Q Consensus 702 ~~~l~~e~~ 710 (793)
+.+.+.++-
T Consensus 225 L~~~~~d~~ 233 (501)
T 1wle_A 225 LVNFTLNKL 233 (501)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 334444433
No 122
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=28.10 E-value=1.2e+02 Score=23.06 Aligned_cols=26 Identities=23% Similarity=0.263 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 595 VLKAEAALREKEEENDILHQRLQQYE 620 (793)
Q Consensus 595 ~~~~e~~l~~~e~e~~~L~~~L~~~e 620 (793)
+..++..+..++.+|..|..++..+.
T Consensus 24 ~~~LE~~v~~L~~eN~~L~~~~~~L~ 49 (55)
T 1dh3_A 24 VKSLENRVAVLENQNKTLIEELKALK 49 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555556666666666665544
No 123
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=27.88 E-value=1.5e+02 Score=24.19 Aligned_cols=44 Identities=16% Similarity=0.168 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 588 LAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMK 631 (793)
Q Consensus 588 l~~l~~r~~~~e~~l~~~e~e~~~L~~~L~~~e~~~~ele~k~~ 631 (793)
..+|=.++.++..+-..+..|+..+++....++.+..|+|+.++
T Consensus 32 k~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeElk 75 (77)
T 2w83_C 32 KNDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEELR 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444566667666667777777777777777777777776554
No 124
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=27.66 E-value=2.9e+02 Score=23.58 Aligned_cols=38 Identities=26% Similarity=0.375 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 596 LKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSM 633 (793)
Q Consensus 596 ~~~e~~l~~~e~e~~~L~~~L~~~e~~~~ele~k~~~~ 633 (793)
..++.....+++++..|+..++.++.....++.++...
T Consensus 33 k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a 70 (101)
T 3u59_A 33 KQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEA 70 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444555555555555554444444444433
No 125
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=27.60 E-value=1.6e+02 Score=20.76 Aligned_cols=21 Identities=24% Similarity=0.343 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 003826 596 LKAEAALREKEEENDILHQRL 616 (793)
Q Consensus 596 ~~~e~~l~~~e~e~~~L~~~L 616 (793)
.+++.++.+++.|++-|+...
T Consensus 6 aqlenevaslenenetlkkkn 26 (49)
T 3he5_A 6 AQLENEVASLENENETLKKKN 26 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccHHHHHhc
Confidence 455666666666666665444
No 126
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=27.45 E-value=1.4e+02 Score=31.31 Aligned_cols=36 Identities=14% Similarity=0.141 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 594 RVLKAEAALREKEEENDILHQRLQQYESRWSEYEQK 629 (793)
Q Consensus 594 r~~~~e~~l~~~e~e~~~L~~~L~~~e~~~~ele~k 629 (793)
.+...+..+..++..+..++.++++++.+..+++.+
T Consensus 20 ~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~~ 55 (323)
T 1lwu_C 20 IGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQT 55 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444444444433
No 127
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=27.06 E-value=4e+02 Score=25.11 Aligned_cols=40 Identities=20% Similarity=0.302 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Q 003826 588 LAELQRRVLKAEAALRE-------KEEENDILHQRLQQYESRWSEYE 627 (793)
Q Consensus 588 l~~l~~r~~~~e~~l~~-------~e~e~~~L~~~L~~~e~~~~ele 627 (793)
..+++.++..+..++.. .+.++..|++.+..++++...++
T Consensus 92 ~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~e 138 (168)
T 3o0z_A 92 IGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLE 138 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33444444444444444 44444444444444444443333
No 128
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=26.93 E-value=1.4e+02 Score=23.46 Aligned_cols=21 Identities=19% Similarity=0.183 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 003826 597 KAEAALREKEEENDILHQRLQ 617 (793)
Q Consensus 597 ~~e~~l~~~e~e~~~L~~~L~ 617 (793)
.++.++..++.+|..|..++.
T Consensus 34 ~Le~~v~~L~~eN~~L~~ev~ 54 (63)
T 2dgc_A 34 QLEDKVEELLSKNYHLENEVA 54 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444433333
No 129
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=26.59 E-value=1.3e+02 Score=32.81 Aligned_cols=48 Identities=13% Similarity=0.114 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 584 KASFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMK 631 (793)
Q Consensus 584 ~~~~l~~l~~r~~~~e~~l~~~e~e~~~L~~~L~~~e~~~~ele~k~~ 631 (793)
+..++.+++.+..++++...+...++..++++|.+.+.++..+...+.
T Consensus 8 l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~ 55 (412)
T 3u06_A 8 LSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVM 55 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555556666666666666666555555544444444433
No 130
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=26.20 E-value=4.1e+02 Score=29.47 Aligned_cols=6 Identities=17% Similarity=0.318 Sum_probs=2.7
Q ss_pred eeecCC
Q 003826 724 VEVKSG 729 (793)
Q Consensus 724 ~e~~~~ 729 (793)
.||-++
T Consensus 205 ~eV~~P 210 (485)
T 3qne_A 205 VPLQAP 210 (485)
T ss_dssp EEEECC
T ss_pred EEEeCC
Confidence 444443
No 131
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=26.10 E-value=3.2e+02 Score=25.46 Aligned_cols=45 Identities=18% Similarity=0.260 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 586 SFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKM 630 (793)
Q Consensus 586 ~~l~~l~~r~~~~e~~l~~~e~e~~~L~~~L~~~e~~~~ele~k~ 630 (793)
..+.+|..++.+....-...+.+...+..+|+.+....-+--.+|
T Consensus 58 ~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~M 102 (154)
T 2ocy_A 58 DEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNM 102 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444445556666666666666665553333333
No 132
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=25.36 E-value=4.1e+02 Score=24.61 Aligned_cols=37 Identities=14% Similarity=0.200 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 588 LAELQRRVLKAEAALREKEEENDILHQRLQQYESRWS 624 (793)
Q Consensus 588 l~~l~~r~~~~e~~l~~~e~e~~~L~~~L~~~e~~~~ 624 (793)
+..++.....+.-++..+++++..|+.+...+-.+|.
T Consensus 98 ~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM 134 (152)
T 3a7p_A 98 TERLNAALISGTIENNVLQQKLSDLKKEHSQLVARWL 134 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444444444444444443
No 133
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=25.23 E-value=6.7e+02 Score=27.06 Aligned_cols=19 Identities=32% Similarity=0.398 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 003826 600 AALREKEEENDILHQRLQQ 618 (793)
Q Consensus 600 ~~l~~~e~e~~~L~~~L~~ 618 (793)
+++.++|.++..|..+|+.
T Consensus 443 ~~~~~~~~~~~~~~~~~~~ 461 (471)
T 3mq9_A 443 KKVEELEGEITTLNHKLQD 461 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 134
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=25.16 E-value=3.8e+02 Score=29.43 Aligned_cols=6 Identities=0% Similarity=0.069 Sum_probs=2.1
Q ss_pred HHHHHH
Q 003826 595 VLKAEA 600 (793)
Q Consensus 595 ~~~~e~ 600 (793)
+..+++
T Consensus 47 ~~~l~~ 52 (455)
T 2dq0_A 47 INRLRH 52 (455)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 135
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=25.09 E-value=3.2e+02 Score=23.27 Aligned_cols=34 Identities=21% Similarity=0.243 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 595 VLKAEAALREKEEENDILHQRLQQYESRWSEYEQ 628 (793)
Q Consensus 595 ~~~~e~~l~~~e~e~~~L~~~L~~~e~~~~ele~ 628 (793)
...++..+...+.+...+..++..+.++..-++.
T Consensus 25 ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~ 58 (101)
T 3u59_A 25 AEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTED 58 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3333333444444444433333333333333333
No 136
>3bxl_B CAM, voltage-dependent R-type calcium channel subunit alpha-1E peptide; ION channel, calmodulin, IQ domain, facillitation, inactivation; 2.30A {Rattus norvegicus} PDB: 3bxk_B
Probab=25.05 E-value=47 Score=21.31 Aligned_cols=18 Identities=22% Similarity=0.257 Sum_probs=14.4
Q ss_pred HHHHHHHHHhhhHHHHHH
Q 003826 521 RAAVVIQRQIKSRVARQK 538 (793)
Q Consensus 521 ~AAi~IQ~~~R~~~~R~~ 538 (793)
-||..|+.+||.+..|+.
T Consensus 3 YAa~mI~e~yrq~K~~r~ 20 (26)
T 3bxl_B 3 YAAMMIMDYYKQSKVKKQ 20 (26)
T ss_pred hHHHHHHHHHHHHHhhhh
Confidence 378899999988887764
No 137
>2ou3_A Tellurite resistance protein of COG3793; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE I3A; 1.85A {Nostoc punctiforme} SCOP: a.287.1.1
Probab=24.92 E-value=1.3e+02 Score=27.85 Aligned_cols=74 Identities=9% Similarity=0.043 Sum_probs=43.0
Q ss_pred cCCcccHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhcCeeEEe----------------------eCCCCceeecC
Q 003826 17 INGVDDAEQFRIVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTV----------------------IDNENHVEPVA 74 (793)
Q Consensus 17 ~~~~dD~~~f~~~~~Al~~lg~~~~~~~~if~ilaaILhLGNi~F~~----------------------~~~~~~~~~~~ 74 (793)
.||.=|..+-+.+..-|..+|+++++...+.. .-+..++.. .-.++......
T Consensus 42 ADG~v~~~E~~~i~~~~~~~~l~~~~~~~l~~------~~~~~~l~~~~~~i~~~~~~~~~~l~~l~~vA~ADG~~~~~E 115 (161)
T 2ou3_A 42 ADGVISPEEKDWALGFCASWGVADWVIEDLKT------YEADEALEEVIARSPQVSMAQRDILLSAIWVSAADGELHEKE 115 (161)
T ss_dssp SSSCCCHHHHHHHHHHHHHTTCCHHHHHHHHH------CCCCSCHHHHHTTCTTGGGCHHHHHHHHHHHHHTTSSCCHHH
T ss_pred hcCCCCHHHHHHHHHHHHHcCCCHHHHHHHhh------ccCCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCCHHH
Confidence 35555566777777777778888877655544 011111100 00011122223
Q ss_pred chHHHHHHHHhCCCHHHHHHHH
Q 003826 75 DEGLITVAKLIGCDIGELKLAL 96 (793)
Q Consensus 75 ~~~l~~~a~LLGv~~~~L~~~L 96 (793)
...+..+|.+||+++.++....
T Consensus 116 ~~~L~~iA~~Lgls~~~~~~l~ 137 (161)
T 2ou3_A 116 KAKIRKMATILGIKEEIVDQLE 137 (161)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHH
Confidence 4579999999999999887664
No 138
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=24.57 E-value=1.4e+02 Score=29.86 Aligned_cols=43 Identities=19% Similarity=0.203 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 592 QRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSME 634 (793)
Q Consensus 592 ~~r~~~~e~~l~~~e~e~~~L~~~L~~~e~~~~ele~k~~~~e 634 (793)
-.|+.++|..+..+++.++++.+..+..+++...++.++..++
T Consensus 5 nsRvd~~EErIs~le~rleei~q~eq~~ekrik~ne~sL~dL~ 47 (233)
T 2yko_A 5 RSRCDQLEERVSAAEDEINEIKREGKFREKRIKRNEQSLQEIW 47 (233)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666666665555555555554444443
No 139
>4dck_A Sodium channel protein type 5 subunit alpha; IQ-motif, EF-hand, voltage-gated sodium channel regulation, CTD binds to FGF13 and CAM. CAM binds to Ca2+.; 2.20A {Homo sapiens} PDB: 2kbi_A
Probab=24.51 E-value=41 Score=32.03 Aligned_cols=21 Identities=29% Similarity=0.415 Sum_probs=18.1
Q ss_pred hHHHHHHHHHhhHHHHhhhhh
Q 003826 544 YSSIMIQSVIRGWLVRRCSGD 564 (793)
Q Consensus 544 ~aai~IQs~~Rg~~aRr~~~~ 564 (793)
.||++||.+||+|+.|+..+.
T Consensus 131 ~aA~~IQra~R~~~~r~~~~~ 151 (168)
T 4dck_A 131 VSAMVIQRAFRRHLLQRSLKH 151 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccccc
Confidence 499999999999998887653
No 140
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=24.36 E-value=1.8e+02 Score=20.91 Aligned_cols=22 Identities=23% Similarity=0.397 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 003826 614 QRLQQYESRWSEYEQKMKSMEE 635 (793)
Q Consensus 614 ~~L~~~e~~~~ele~k~~~~ee 635 (793)
.+++.-++++.++..+.+.+++
T Consensus 16 rEI~Kte~kI~~lqkKlkeLee 37 (42)
T 2l5g_B 16 REITMVEQQISKLKKKQQQLEE 37 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444443
No 141
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=24.19 E-value=4.5e+02 Score=29.28 Aligned_cols=35 Identities=14% Similarity=-0.013 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 606 EEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQ 640 (793)
Q Consensus 606 e~e~~~L~~~L~~~e~~~~ele~k~~~~ee~~qkq 640 (793)
++++......|+.|+..+.++..+|+++|-....|
T Consensus 123 KekVdnQlsnIrvLQsnLedq~~kIQRLEvDIdiq 157 (562)
T 3ghg_A 123 KRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIK 157 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444445555555555444433
No 142
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=23.97 E-value=6.5e+02 Score=27.83 Aligned_cols=14 Identities=21% Similarity=0.266 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHhcc
Q 003826 643 SLQSSLSIAKKSLA 656 (793)
Q Consensus 643 ~lq~~L~a~~~sla 656 (793)
..+.++++..+.++
T Consensus 91 aYe~~~~~~~k~la 104 (497)
T 3iox_A 91 AYEDEQTSIKAALA 104 (497)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444444
No 143
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=23.88 E-value=3.7e+02 Score=23.64 Aligned_cols=41 Identities=20% Similarity=0.189 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 590 ELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKM 630 (793)
Q Consensus 590 ~l~~r~~~~e~~l~~~e~e~~~L~~~L~~~e~~~~ele~k~ 630 (793)
.+......++.++..+...+..++.+.+.....+...|.-+
T Consensus 31 ~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di 71 (119)
T 3ol1_A 31 QLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTL 71 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 33333334444444444445555555444444444444443
No 144
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=23.24 E-value=1.9e+02 Score=19.99 Aligned_cols=19 Identities=26% Similarity=0.209 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 003826 595 VLKAEAALREKEEENDILH 613 (793)
Q Consensus 595 ~~~~e~~l~~~e~e~~~L~ 613 (793)
+.++..+...++.|+..|+
T Consensus 10 VEeLl~~~~~Le~EV~RL~ 28 (36)
T 1kd8_A 10 VEEIESEVWHLENEVARLE 28 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHH
Confidence 3333333333444443333
No 145
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=23.20 E-value=1.6e+02 Score=26.80 Aligned_cols=23 Identities=26% Similarity=0.161 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 003826 594 RVLKAEAALREKEEENDILHQRL 616 (793)
Q Consensus 594 r~~~~e~~l~~~e~e~~~L~~~L 616 (793)
+...++......+.|+++|.-.|
T Consensus 61 ~R~~aE~~~~~ie~ElE~LTasL 83 (135)
T 2e7s_A 61 LRTKAEEEADKLNKEVEDLTASL 83 (135)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444
No 146
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=23.00 E-value=1.3e+02 Score=20.76 Aligned_cols=23 Identities=22% Similarity=0.320 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 003826 608 ENDILHQRLQQYESRWSEYEQKM 630 (793)
Q Consensus 608 e~~~L~~~L~~~e~~~~ele~k~ 630 (793)
++...++++.++++++.-+++.+
T Consensus 8 Kn~a~qqDIddlkrQN~~Le~Qi 30 (34)
T 1a93_B 8 KNDTHQQDIDDLKRQNALLEQQV 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhhHhhHHHHHHHHHHHHHHH
Confidence 34444444444444444444433
No 147
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=21.64 E-value=3.7e+02 Score=23.22 Aligned_cols=9 Identities=22% Similarity=0.224 Sum_probs=3.7
Q ss_pred HHHHHHHHH
Q 003826 642 RSLQSSLSI 650 (793)
Q Consensus 642 ~~lq~~L~a 650 (793)
.+|+..|+.
T Consensus 92 aeLKrqLAd 100 (107)
T 2k48_A 92 GELKRQLAD 100 (107)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444443
No 148
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=21.61 E-value=4.3e+02 Score=23.45 Aligned_cols=27 Identities=22% Similarity=0.329 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 592 QRRVLKAEAALREKEEENDILHQRLQQ 618 (793)
Q Consensus 592 ~~r~~~~e~~l~~~e~e~~~L~~~L~~ 618 (793)
-.+..+.+.++..+.+++.+|+..|..
T Consensus 10 ~~~~~~~e~e~~~l~~~~~el~~~l~~ 36 (125)
T 1joc_A 10 LERCLKGEGEIEKLQTKVLELQRKLDN 36 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 334455555555555555555555543
No 149
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=20.89 E-value=4.2e+02 Score=23.48 Aligned_cols=38 Identities=8% Similarity=0.116 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003826 597 KAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSME 634 (793)
Q Consensus 597 ~~e~~l~~~e~e~~~L~~~L~~~e~~~~ele~k~~~~e 634 (793)
++-.+....|.|+..|+.++.++...+.+.+..+..+-
T Consensus 8 ~~~~~~~~~e~e~~~l~~~~~el~~~l~~~~~~~~e~g 45 (125)
T 1joc_A 8 ALLERCLKGEGEIEKLQTKVLELQRKLDNTTAAVQELG 45 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455556677788888888888877776666655443
No 150
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=20.37 E-value=5.4e+02 Score=28.37 Aligned_cols=10 Identities=40% Similarity=0.531 Sum_probs=4.8
Q ss_pred CcchhhhhHH
Q 003826 698 GLSVISRLAE 707 (793)
Q Consensus 698 ~~~~~~~l~~ 707 (793)
|+..+.+|..
T Consensus 299 Gle~ih~LT~ 308 (464)
T 1m1j_B 299 GNDKISQLTK 308 (464)
T ss_dssp CHHHHHHHHT
T ss_pred cccceeeccC
Confidence 3444555554
No 151
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=20.31 E-value=4e+02 Score=22.60 Aligned_cols=62 Identities=16% Similarity=0.371 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003826 589 AELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSLSIAKKS 654 (793)
Q Consensus 589 ~~l~~r~~~~e~~l~~~e~e~~~L~~~L~~~e~~~~ele~k~~~~ee~~qkq~~~lq~~L~a~~~s 654 (793)
..+.+....+..++..++.+...|.++-..+-.....+...+.....+ ..++..++..+...
T Consensus 28 ~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE----~~Sl~~q~~~~~~q 89 (96)
T 3q8t_A 28 EDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDE----LKSVENQMRYAQMQ 89 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 333333344444444444444444333333333333333333333322 24455554444433
Done!