Query 003827
Match_columns 793
No_of_seqs 311 out of 2066
Neff 6.2
Searched_HMMs 46136
Date Thu Mar 28 12:46:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003827.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003827hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0020 Endoplasmic reticulum 100.0 7E-177 1E-181 1414.2 39.1 661 79-751 71-749 (785)
2 KOG0019 Molecular chaperone (H 100.0 2E-171 5E-176 1412.6 50.3 616 78-751 32-650 (656)
3 PTZ00272 heat shock protein 83 100.0 6E-168 1E-172 1459.3 66.5 656 81-751 3-673 (701)
4 PTZ00130 heat shock protein 90 100.0 1E-166 3E-171 1446.6 65.0 661 78-751 63-761 (814)
5 COG0326 HtpG Molecular chapero 100.0 2E-162 4E-167 1369.5 57.2 615 79-744 3-622 (623)
6 PRK05218 heat shock protein 90 100.0 7E-143 1E-147 1248.5 62.4 607 80-745 3-613 (613)
7 PRK14083 HSP90 family protein; 100.0 2E-130 4E-135 1134.1 58.0 576 82-748 2-597 (601)
8 PF00183 HSP90: Hsp90 protein; 100.0 1E-130 3E-135 1124.0 43.8 478 268-751 1-500 (531)
9 COG0323 MutL DNA mismatch repa 99.8 2.9E-20 6.4E-25 218.7 14.1 263 89-447 4-304 (638)
10 TIGR00585 mutl DNA mismatch re 99.7 3.2E-16 6.8E-21 171.1 18.9 233 98-419 17-266 (312)
11 PRK00095 mutL DNA mismatch rep 99.7 2.3E-16 5.1E-21 186.3 18.0 263 99-451 18-306 (617)
12 PF13589 HATPase_c_3: Histidin 99.6 3.9E-16 8.5E-21 150.6 9.1 104 101-233 1-106 (137)
13 COG1389 DNA topoisomerase VI, 99.4 1.3E-12 2.7E-17 143.9 10.2 153 105-283 38-200 (538)
14 PRK04184 DNA topoisomerase VI 99.1 5.9E-10 1.3E-14 128.6 14.1 153 105-284 38-201 (535)
15 KOG1979 DNA mismatch repair pr 99.1 6.6E-10 1.4E-14 125.3 12.5 162 88-285 7-186 (694)
16 TIGR01052 top6b DNA topoisomer 99.0 2.1E-09 4.5E-14 123.0 13.2 148 106-284 31-192 (488)
17 PRK14868 DNA topoisomerase VI 99.0 4E-09 8.7E-14 124.3 13.0 147 106-284 49-207 (795)
18 PRK14867 DNA topoisomerase VI 98.8 3.6E-08 7.7E-13 116.1 14.5 149 106-284 39-198 (659)
19 KOG1978 DNA mismatch repair pr 98.7 5.2E-08 1.1E-12 112.8 11.1 155 97-284 14-179 (672)
20 smart00433 TOP2c Topoisomerase 98.7 1.5E-07 3.2E-12 111.5 15.2 154 107-292 5-170 (594)
21 PRK05559 DNA topoisomerase IV 98.6 6.4E-08 1.4E-12 115.1 8.8 160 103-292 37-206 (631)
22 TIGR01055 parE_Gneg DNA topois 98.6 7.4E-08 1.6E-12 114.3 8.7 149 104-284 31-192 (625)
23 TIGR01059 gyrB DNA gyrase, B s 98.6 2.1E-06 4.5E-11 103.0 20.1 154 105-292 32-197 (654)
24 PF02518 HATPase_c: Histidine 98.4 1E-06 2.2E-11 80.9 7.5 80 106-214 8-87 (111)
25 PRK05644 gyrB DNA gyrase subun 98.3 1.5E-06 3.3E-11 103.6 9.3 156 105-292 39-204 (638)
26 PRK14939 gyrB DNA gyrase subun 98.3 1.9E-06 4E-11 103.7 9.1 152 105-294 39-208 (756)
27 KOG1977 DNA mismatch repair pr 97.8 1E-05 2.2E-10 93.5 3.2 126 103-260 21-149 (1142)
28 smart00387 HATPase_c Histidine 97.4 0.0008 1.7E-08 59.4 8.3 81 106-215 8-88 (111)
29 TIGR01058 parE_Gpos DNA topois 97.3 0.00048 1E-08 82.3 7.2 160 106-294 37-206 (637)
30 cd00075 HATPase_c Histidine ki 97.2 0.0016 3.5E-08 56.4 8.3 86 106-220 3-92 (103)
31 PRK10604 sensor protein RstB; 97.1 0.0014 3.1E-08 74.7 8.3 78 106-213 322-399 (433)
32 PRK10755 sensor protein BasS/P 97.0 0.0015 3.2E-08 72.0 7.8 76 106-213 250-325 (356)
33 PRK09470 cpxA two-component se 97.0 0.0021 4.5E-08 72.9 8.7 76 106-211 356-431 (461)
34 PRK10549 signal transduction h 96.9 0.0019 4E-08 73.6 7.8 80 107-214 356-435 (466)
35 KOG0019 Molecular chaperone (H 96.9 3.1E-05 6.7E-10 89.0 -6.5 228 480-719 375-605 (656)
36 TIGR02916 PEP_his_kin putative 96.9 0.0019 4E-08 78.2 7.9 74 106-212 582-655 (679)
37 TIGR01386 cztS_silS_copS heavy 96.9 0.0027 5.8E-08 71.7 8.1 79 106-212 356-434 (457)
38 PRK11006 phoR phosphate regulo 96.8 0.0028 6E-08 72.1 7.9 80 105-212 319-398 (430)
39 TIGR02938 nifL_nitrog nitrogen 96.8 0.0036 7.9E-08 70.9 8.8 78 105-211 389-468 (494)
40 PRK11100 sensory histidine kin 96.8 0.0043 9.3E-08 70.3 8.8 78 106-212 371-448 (475)
41 TIGR02966 phoR_proteo phosphat 96.5 0.0062 1.3E-07 65.1 7.8 78 107-212 233-310 (333)
42 PRK15347 two component system 96.4 0.0063 1.4E-07 75.6 8.1 50 106-170 516-565 (921)
43 PLN03128 DNA topoisomerase 2; 96.4 0.014 2.9E-07 73.9 10.4 95 105-222 54-156 (1135)
44 PRK10815 sensor protein PhoQ; 96.4 0.0076 1.6E-07 70.2 7.8 98 107-264 382-479 (485)
45 TIGR02956 TMAO_torS TMAO reduc 96.3 0.0094 2E-07 74.6 8.9 75 106-211 582-657 (968)
46 PRK11086 sensory histidine kin 96.3 0.014 3E-07 67.7 9.6 54 106-171 436-489 (542)
47 PRK15053 dpiB sensor histidine 96.3 0.013 2.8E-07 68.5 9.2 77 107-212 436-514 (545)
48 PRK10364 sensor protein ZraS; 96.2 0.015 3.3E-07 66.5 9.1 51 106-170 351-401 (457)
49 PRK11466 hybrid sensory histid 96.2 0.012 2.5E-07 73.4 8.5 73 107-212 565-637 (914)
50 PHA02569 39 DNA topoisomerase 96.2 0.0079 1.7E-07 71.7 6.4 128 105-261 47-184 (602)
51 PTZ00108 DNA topoisomerase 2-l 96.1 0.013 2.8E-07 75.0 8.5 133 105-261 59-202 (1388)
52 PLN03237 DNA topoisomerase 2; 96.1 0.014 3E-07 74.6 8.6 163 105-296 79-260 (1465)
53 PRK09467 envZ osmolarity senso 96.1 0.017 3.8E-07 65.2 8.7 75 107-213 335-409 (435)
54 PRK11360 sensory histidine kin 96.0 0.017 3.6E-07 67.1 8.1 50 107-170 504-554 (607)
55 PTZ00109 DNA gyrase subunit b; 95.9 0.0089 1.9E-07 73.0 5.6 103 105-223 131-272 (903)
56 COG0187 GyrB Type IIA topoisom 95.9 0.02 4.4E-07 67.2 8.1 163 103-295 36-210 (635)
57 PRK11091 aerobic respiration c 95.9 0.023 5E-07 69.7 8.9 78 106-211 401-479 (779)
58 PRK10337 sensor protein QseC; 95.8 0.022 4.8E-07 64.7 7.9 72 107-213 356-427 (449)
59 PRK09303 adaptive-response sen 95.8 0.033 7.1E-07 62.7 9.0 77 106-212 275-352 (380)
60 PRK10841 hybrid sensory kinase 95.8 0.023 4.9E-07 71.4 8.4 78 106-212 565-642 (924)
61 PRK11107 hybrid sensory histid 95.6 0.032 7E-07 69.3 8.8 86 106-220 411-505 (919)
62 PRK10490 sensor protein KdpD; 95.6 0.025 5.5E-07 70.8 7.8 77 106-212 781-857 (895)
63 PRK10618 phosphotransfer inter 95.6 0.034 7.4E-07 69.5 8.9 51 106-171 568-621 (894)
64 TIGR03785 marine_sort_HK prote 95.4 0.042 9E-07 67.1 8.5 80 106-213 600-679 (703)
65 PRK13837 two-component VirA-li 95.2 0.11 2.4E-06 64.5 11.4 82 106-221 563-663 (828)
66 PRK04069 serine-protein kinase 95.2 0.026 5.7E-07 56.0 4.8 88 105-219 44-131 (161)
67 COG4191 Signal transduction hi 94.9 0.041 9E-07 64.3 6.2 53 108-172 502-554 (603)
68 TIGR01925 spIIAB anti-sigma F 94.9 0.11 2.4E-06 49.5 8.2 46 106-162 42-87 (137)
69 COG0642 BaeS Signal transducti 94.8 0.039 8.5E-07 57.9 5.4 51 105-170 230-280 (336)
70 PRK09959 hybrid sensory histid 94.5 0.073 1.6E-06 68.5 7.6 76 106-212 831-911 (1197)
71 PRK10547 chemotaxis protein Ch 94.3 0.19 4.1E-06 60.9 10.0 55 108-168 390-448 (670)
72 PRK09835 sensor kinase CusS; P 94.2 0.075 1.6E-06 60.7 6.3 52 106-171 378-429 (482)
73 PRK03660 anti-sigma F factor; 94.0 0.26 5.6E-06 47.4 8.7 48 105-163 41-88 (146)
74 TIGR01924 rsbW_low_gc serine-p 93.8 0.11 2.3E-06 51.7 5.7 87 106-219 45-131 (159)
75 COG3290 CitA Signal transducti 93.7 0.12 2.6E-06 60.0 6.5 73 106-210 430-504 (537)
76 PF13581 HATPase_c_2: Histidin 93.5 0.15 3.2E-06 47.8 5.7 81 105-217 33-113 (125)
77 PRK13557 histidine kinase; Pro 93.3 0.18 3.8E-06 58.2 7.2 21 150-170 325-345 (540)
78 PRK11073 glnL nitrogen regulat 92.1 0.36 7.9E-06 52.7 7.3 51 105-170 239-301 (348)
79 COG3920 Signal transduction hi 91.7 0.34 7.3E-06 50.9 6.1 48 106-164 125-174 (221)
80 COG5000 NtrY Signal transducti 91.5 0.41 8.9E-06 56.4 6.9 54 108-170 605-660 (712)
81 COG2172 RsbW Anti-sigma regula 90.7 0.86 1.9E-05 44.9 7.5 86 105-223 42-130 (146)
82 PRK10600 nitrate/nitrite senso 90.2 0.31 6.6E-06 57.8 4.7 43 107-164 473-515 (569)
83 PRK11644 sensory histidine kin 90.0 0.28 6E-06 57.5 4.0 43 107-164 414-456 (495)
84 KOG0787 Dehydrogenase kinase [ 89.3 1.9 4.2E-05 48.3 9.4 122 105-266 262-383 (414)
85 PRK13560 hypothetical protein; 87.9 0.56 1.2E-05 57.1 4.8 45 107-164 715-762 (807)
86 COG4585 Signal transduction hi 87.2 0.53 1.2E-05 52.6 3.7 47 106-167 282-328 (365)
87 COG3850 NarQ Signal transducti 86.5 0.9 1.9E-05 52.9 5.0 43 107-164 485-527 (574)
88 COG2205 KdpD Osmosensitive K+ 85.0 3.4 7.4E-05 50.6 9.0 57 106-176 778-834 (890)
89 COG4251 Bacteriophytochrome (l 79.6 4.9 0.00011 47.9 7.4 68 138-221 656-729 (750)
90 COG2972 Predicted signal trans 78.1 3.8 8.1E-05 47.6 6.0 56 101-168 348-405 (456)
91 KOG1845 MORC family ATPases [C 77.9 1.9 4.2E-05 52.6 3.6 54 154-221 192-246 (775)
92 PRK10935 nitrate/nitrite senso 77.1 2.7 5.9E-05 49.2 4.6 42 107-163 475-517 (565)
93 COG5002 VicK Signal transducti 75.4 3.7 8.1E-05 45.8 4.6 54 140-207 363-418 (459)
94 COG4192 Signal transduction hi 71.9 7.2 0.00016 44.9 5.9 49 107-170 568-619 (673)
95 PRK13559 hypothetical protein; 71.7 5 0.00011 44.2 4.7 44 107-163 271-318 (361)
96 KOG0355 DNA topoisomerase type 68.8 6.3 0.00014 48.2 4.9 47 105-165 55-101 (842)
97 PF01119 DNA_mis_repair: DNA m 60.2 15 0.00032 34.5 4.8 91 366-465 9-115 (119)
98 COG0643 CheA Chemotaxis protei 54.8 21 0.00045 44.1 6.0 128 108-262 437-572 (716)
99 cd03482 MutL_Trans_MutL MutL_T 54.7 19 0.00042 34.2 4.6 71 367-447 14-96 (123)
100 cd03486 MutL_Trans_MLH3 MutL_T 53.9 24 0.00051 34.4 5.2 54 356-420 3-57 (141)
101 COG3851 UhpB Signal transducti 50.2 20 0.00044 40.3 4.4 27 136-162 428-454 (497)
102 COG2865 Predicted transcriptio 46.2 55 0.0012 38.4 7.3 101 83-211 238-356 (467)
103 cd03483 MutL_Trans_MLH1 MutL_T 45.2 32 0.00069 32.9 4.5 90 367-466 15-124 (127)
104 PF04122 CW_binding_2: Putativ 45.1 49 0.0011 29.4 5.5 55 537-594 24-79 (92)
105 cd03484 MutL_Trans_hPMS_2_like 43.5 39 0.00085 32.9 4.9 36 379-420 43-78 (142)
106 KOG1845 MORC family ATPases [C 43.0 16 0.00036 44.9 2.6 51 152-221 2-53 (775)
107 cd00329 TopoII_MutL_Trans MutL 41.9 57 0.0012 29.0 5.4 52 358-418 4-56 (107)
108 PF12588 PSDC: Phophatidylseri 41.8 44 0.00096 32.9 4.9 58 688-750 2-64 (141)
109 cd03485 MutL_Trans_hPMS_1_like 37.9 58 0.0013 31.2 5.1 92 367-464 15-127 (132)
110 cd00782 MutL_Trans MutL_Trans: 37.2 56 0.0012 30.5 4.8 43 368-419 15-57 (122)
111 COG4564 Signal transduction hi 35.9 46 0.00099 37.2 4.3 55 100-167 352-408 (459)
112 COG1578 Uncharacterized conser 34.7 2.3E+02 0.0051 30.9 9.2 57 456-513 73-133 (285)
113 PF06112 Herpes_capsid: Gammah 29.8 60 0.0013 32.1 3.6 24 682-705 16-39 (147)
114 PRK06851 hypothetical protein; 28.5 5.1E+02 0.011 29.6 11.3 62 512-577 190-254 (367)
115 PF04025 DUF370: Domain of unk 23.6 1.2E+02 0.0026 26.6 4.0 44 105-167 23-70 (73)
116 smart00481 POLIIIAc DNA polyme 23.3 1.2E+02 0.0026 25.1 4.0 56 515-572 4-61 (67)
117 PF14501 HATPase_c_5: GHKL dom 21.4 1.4E+02 0.003 26.7 4.3 17 198-214 63-79 (100)
118 PF14204 Ribosomal_L18_c: Ribo 21.2 20 0.00043 32.9 -1.3 45 466-514 11-57 (94)
No 1
>KOG0020 consensus Endoplasmic reticulum glucose-regulated protein (GRP94/endoplasmin), HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.5e-177 Score=1414.25 Aligned_cols=661 Identities=48% Similarity=0.855 Sum_probs=615.4
Q ss_pred CcccccchhhHHHHHHHHHHccCCCchHHHHHhHhhHhhHHHhhhhhhccCCCCCCCCCCceEEEEECCCCcEEEEEeCC
Q 003827 79 SGEKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTG 158 (793)
Q Consensus 79 ~~e~~~Fq~e~~~Ll~ll~~~LYs~~~vflRELIsNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnG 158 (793)
..++|.||+|++|||++|+|+||+|++|||||||+||+||++|+|+++++|+..+....++.|+|..|++++.|.|.|.|
T Consensus 71 kaeKf~FQaEVnRmMklIINSLY~NKeIFLRELISNASDAlDKIRllaLtd~~~L~~~~el~ikIK~Dke~klLhi~DtG 150 (785)
T KOG0020|consen 71 KAEKFEFQAEVNRMMKLIINSLYRNKEIFLRELISNASDALDKIRLLALTDKDVLGETEELEIKIKADKEKKLLHITDTG 150 (785)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhhhheeeeeccChhHhCcCcceEEEEeechhhCeeeEeccc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHhhhcccCchhHHHHhhhcccCC-CCCccccccccccceecccccEEEEEEecCCCCCeEEEEEccCCc
Q 003827 159 IGMTKEELVDCLGTIAQSGTSKFLKALKENNDLG-ADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADSS 237 (793)
Q Consensus 159 iGMt~eeL~~~L~tIa~Sgt~~f~~~l~~~~~~~-~d~~~IGqFGIGf~S~F~VadkV~V~Tr~~~~~~~~~w~s~~~~~ 237 (793)
+|||++||++||||||+|||++|++++++.++++ .-..+||||||||||+|+|||+|+|+|++++ +.+|.|+|+++ +
T Consensus 151 iGMT~edLi~NLGTIAkSGTs~Fl~Km~~~~~~~~~~~dlIGQFGVGFYsAfLVAD~vvVtsKhNd-D~QyiWESdan-~ 228 (785)
T KOG0020|consen 151 IGMTREDLIKNLGTIAKSGTSEFLEKMQDSGDSEGLMNDLIGQFGVGFYSAFLVADRVVVTSKHND-DSQYIWESDAN-S 228 (785)
T ss_pred CCccHHHHHHhhhhhhcccHHHHHHHhhccccchhhHHHHHHhcchhhhhhhhhcceEEEEeccCC-ccceeeeccCc-c
Confidence 9999999999999999999999999998643322 1236999999999999999999999999987 88999999986 8
Q ss_pred eEEEEccCCCCCCCCCCeEEEEEecCCCcccCCchhhHHHHHHhhcCCCccCeEecccccccccccccCCC--CCC----
Q 003827 238 SYVIREETDPEKLLKRGTQITLYLKEDDKYEFSEPTRIQGLVKNYSQFVSFPIYTWQEKSRTIEVEEEEKP--EEG---- 311 (793)
Q Consensus 238 ~~i~~~~~~~~~~~~~GT~I~L~Lk~d~~~e~~~~~~i~~li~~ys~fi~~pI~l~~~~~~~~~~~~~~~~--~~~---- 311 (793)
|+|..++ .+++.+|||.|+|+||+++. +|+++..+++||++||+||+|||++|..|+++++++-+|++ +++
T Consensus 229 FsvseDp--rg~tL~RGt~ItL~LkeEA~-dyLE~dtlkeLvkkYSqFINFpI~lWsSKt~~~E~pvEEe~~t~e~~~ed 305 (785)
T KOG0020|consen 229 FSVSEDP--RGNTLGRGTEITLYLKEEAG-DYLEEDTLKELVKKYSQFINFPISLWSSKTVEVEVPVEEEEETEEDSTED 305 (785)
T ss_pred eeeecCC--CCCcccCccEEEEEehhhhh-hhcchhHHHHHHHHHHHhcCCceeeeeccceeeecccccccccccccccc
Confidence 9999887 77889999999999999999 99999999999999999999999999999877776643322 111
Q ss_pred C--CCccc-ccccccccccccccceeeecCCCcccccCCCCCCHHHHHHHHHHHhcccCCCcceeeecccceeEEEEEEE
Q 003827 312 E--EQPEG-EKKTKKTTKTEKYWDWELANETKPIWMRNPKEIEKDEYHEFYKKTFNEFLDPLAYTHFTTEGEVEFRSVLY 388 (793)
Q Consensus 312 ~--~~~~~-~~~~~~~~~~~~~~~~~~~N~~~~iW~r~~~~v~~eey~~fyk~~~~~~~~pl~~~h~~~eg~~~~~~ll~ 388 (793)
+ .++++ ++++|+|+|.+++|+|+++|+.+|||+|+|++|+++||..||+++++++.+|++|+||++||.++|++|||
T Consensus 306 ~ea~vEEee~EKpKTKKV~kT~wdWel~NdvKpIW~R~p~eV~EdEYt~FYkSlsKds~dPma~~HF~aEGeVtFksiLy 385 (785)
T KOG0020|consen 306 KEAAVEEEEEEKPKTKKVEKTVWDWELLNDVKPIWLRKPKEVTEDEYTKFYKSLSKDSTDPMAYIHFTAEGEVTFKSILY 385 (785)
T ss_pred hhhhhhhhhhccccccchhhcchhhhhhcccchhhccCchhcchHHHHHHHHhhhccccCccceeeeeccccEEEEEEEE
Confidence 1 12222 33579999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCCcccccc-ccccceEEEeeeeeeccCCCCCCCcccccccceeecCCCCCCcccHHhhhccHHHHHHHHHHHHH
Q 003827 389 IPGMGPLNNEEIMN-PKTKNIRLYVKRVFISDDFDGELFPRYLSFVKGVVDSDDLPLNVSREILQESRIVRIMRKRLVRK 467 (793)
Q Consensus 389 iP~~~p~~~~~~~~-~~~~~i~LYv~rVfI~D~~~~~LlP~wl~FvrGVVDS~DLpLNvSRE~LQ~~~~l~~Irk~l~~k 467 (793)
||+.+|.++|+.+. ++..+|+|||+||||+|++. ++||.||+||||||||+|||||||||+||++++|++|+|.|++|
T Consensus 386 VP~~~P~~lf~~Yg~~~~dniKLYVrrVFItDeF~-dmmPkYLsFikGvVDSDdLPLNVSrE~LQQHkllKvIkKKLvrK 464 (785)
T KOG0020|consen 386 VPKKAPRDLFDEYGSKKSDNIKLYVRRVFITDEFH-DMMPKYLSFIKGVVDSDDLPLNVSRETLQQHKLLKVIKKKLVRK 464 (785)
T ss_pred eCCCCchHHHHHhccccccceeEEEEEEEecchHH-HHhHHHHHHHhhccCcCcCcccccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999997665 66799999999999999999 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhccCHHHHHH-HHHHHhHHhheecccCcccHHhhcCccceeeccCCCcccCHHHHHHhcccCCCeEEEEec
Q 003827 468 TFDMIQDISQSENKEDYKK-FWENFGRFLKLGCVEDSGNHKRLAPLLRFYTSKSEEELISLDEYVENMGEKQNAIYYLAT 546 (793)
Q Consensus 468 ~l~~l~~la~~~d~e~y~k-f~~~fg~~lK~G~~eD~~~~~~l~~LLrF~Ts~~~~~~~SL~eYv~rmke~Qk~IYY~~~ 546 (793)
+|+||++++ .++|.. ||++||.+||+|+++|+.||.+|++||||+||+++.+.+||++|++|||+.|+.|||++|
T Consensus 465 ~LDmikKia----~e~~~d~FW~EFgtniKLGviED~sNr~rLAKLLrFqss~~~~~~TsLdqYveRMK~kQ~~IyymaG 540 (785)
T KOG0020|consen 465 VLDMIKKIA----GEKYDDIFWKEFGTNIKLGVIEDPSNRTRLAKLLRFQSSNHPTKITSLDQYVERMKEKQDKIYYMAG 540 (785)
T ss_pred HHHHHHHhh----ccccchHHHHHhccceeeeeeeCcccHHHHHHHHhhhccCCCCCcccHHHHHHHHhhccccEEEecC
Confidence 999999999 256777 999999999999999999999999999999999889999999999999999999999999
Q ss_pred CCHHHHhhChhHHHHHhcCceEEecCCCchHHHHHHHhhccCcceeeccccccCCCCchhHhh--HhhHHHHHHHHHHHH
Q 003827 547 DSLKSAKSAPFLEKLVQKDIEVLYLIEPIDEVAIQNLQTFNEKKFVDISKEDLELGDEDEVKE--RETKQEFNLLCDWIK 624 (793)
Q Consensus 547 ~s~~~~~~Sp~lE~~~~kG~eVL~l~dpiDE~~l~~L~e~~gkkf~~V~k~~l~l~~~~e~~~--e~~~~e~~~L~~~lk 624 (793)
.|+++++.|||+|++.+|||||||+++|+||||||.|.+|+||+|++|.++|+.+++.+..++ +..+++|++|++|||
T Consensus 541 ssr~e~E~sPfvERLlkKGyEVi~ltepVDEyciqalpe~d~KkFQNVaKEG~k~~~~eK~Ke~~e~l~~~FepL~~W~k 620 (785)
T KOG0020|consen 541 SSRKEVEKSPFVERLLKKGYEVIYLTEPVDEYCIQALPEFDGKKFQNVAKEGVKFDKSEKTKESHEALEEEFEPLTKWLK 620 (785)
T ss_pred CcHhhhccCcHHHHHHhcCceEEEEcchhHHHHHHhhhhhcchhHhHHHhhhcccCcccchhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999987665543 556889999999999
Q ss_pred HH-hccceeEEEEeecCCCCCeEEEeCCCCccHHHHHHHHHHhcC---CCCcccccccceeEEeCCCChHHHHHHHhhhc
Q 003827 625 QQ-LGDKVAKVQVSKRLSSSPCVLVSGKFGWSANMERLMKAQALG---DTSSLEFMRGRRILEINPDHPIVKDLNAACKN 700 (793)
Q Consensus 625 ~~-L~~kV~~V~vS~RL~~sP~~lv~~e~g~s~~Merimkaq~~~---d~~~~~~~~~kk~LEINp~HpLIk~L~~~~~~ 700 (793)
.. |.++|++++||+||++|||++|++.||||+||||||++|+.+ |.+..-|+.+|++|||||+||||+.|+.++.+
T Consensus 621 ~~alkd~ieka~vSqrL~~spcalVas~~GwsgNmERimksqa~~~~kD~~~~~Y~~qKkt~EINPRHPlirell~Ri~a 700 (785)
T KOG0020|consen 621 DKALKDKIEKAVVSQRLTESPCALVASQYGWSGNMERIMKSQAYQKSKDPSKNYYASQKKTFEINPRHPLIRELLRRIAA 700 (785)
T ss_pred hhHHHHHHHHHHHHHHhccCchhhhhhhccccccHHHHHHHhhhhccCCchhhHHhccCceeeeCCCChHHHHHHHHhhc
Confidence 86 569999999999999999999999999999999999999875 44444578899999999999999999999999
Q ss_pred CCCchHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHcCCCCCCC
Q 003827 701 APDSTDAKRAVDLLYDTALISSGFTPDSPADLGNKIYEMMAMALGGRWGRS 751 (793)
Q Consensus 701 ~~~d~~~~~l~~lLyd~ALL~sG~~leDp~~fa~ri~~LL~~~L~~~~~~~ 751 (793)
++.|+.++++|.+||.+|+|.+||.+.|+..|+.||++||+.+|+ |+.+
T Consensus 701 deeD~t~~d~A~lmf~TAtlrSGf~L~d~~~fadrIe~~lr~sL~--is~D 749 (785)
T KOG0020|consen 701 DEEDETVKDTAVLMFETATLRSGFILQDTKDFADRIENMLRQSLN--ISPD 749 (785)
T ss_pred CcccchHHHHHHHHHHHHHhhcCccccchHHHHHHHHHHHHhhcC--CCcc
Confidence 999999999999999999999999999999999999999999999 8876
No 2
>KOG0019 consensus Molecular chaperone (HSP90 family) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-171 Score=1412.60 Aligned_cols=616 Identities=48% Similarity=0.803 Sum_probs=592.9
Q ss_pred CCcccccchhhHHHHHHHHHHccCCCchHHHHHhHhhHhhHHHhhhhhhccCCCCCCCCCCceEEEEECCCCcEEEEEeC
Q 003827 78 TSGEKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDT 157 (793)
Q Consensus 78 ~~~e~~~Fq~e~~~Ll~ll~~~LYs~~~vflRELIsNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~Dn 157 (793)
.+.|+|.||||+++||++++|++||++++||||||+||+||++|+||+++++|+.+ .+++.|+|++++++++|+|.|+
T Consensus 32 ~~~et~~fqaE~~qLm~lii~s~YS~kEvFlRELISNaSDAldKiRy~~lt~~~~~--~~~l~I~i~~nk~~~tlti~Dt 109 (656)
T KOG0019|consen 32 EPQETHEFQAETNQLMDIVAKSLYSHKEVFLRELISNASDALEKLRYLELKGDEKA--LPELEIRIITNKDKRTITIQDT 109 (656)
T ss_pred ccccceehhhhHHhHHHHHHHHhhcchHHHHHhhhccccchHHHHHHHhhcCcccc--ccceeEEeccCCCcceEEEEec
Confidence 35689999999999999999999999999999999999999999999999999887 7889999999999999999999
Q ss_pred CCCCCHHHHHHHHhhhcccCchhHHHHhhhcccCCCCCccccccccccceecccccEEEEEEecCCCCCeEEEEEccCCc
Q 003827 158 GIGMTKEELVDCLGTIAQSGTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADSS 237 (793)
Q Consensus 158 GiGMt~eeL~~~L~tIa~Sgt~~f~~~l~~~~~~~~d~~~IGqFGIGf~S~F~VadkV~V~Tr~~~~~~~~~w~s~~~~~ 237 (793)
|||||++||.++|||||+|||++|++++++ ++.+.++||||||||||+|+||++|+|+||+++ +.+|.|++.++++
T Consensus 110 GIGMTk~dLvnnLGTIAkSGtK~Fmealke---a~ad~~~IGQFGvGFYSaylVAdkV~V~tk~~~-~e~y~Wes~~~gs 185 (656)
T KOG0019|consen 110 GIGMTKEDLVNNLGTIAKSGSKAFLEALKE---AEAESNLIGQFGVGFYSAFMVADRVVVTTRHPA-DEGLQWTSNGRGS 185 (656)
T ss_pred CCCcCHHHHHhhhhhhhhcccHHHHHHHHh---cccchhhhhhcccchhhhhhhhheeEEeeccCC-CcceeeecCCCCc
Confidence 999999999999999999999999999984 367889999999999999999999999999987 5599999999999
Q ss_pred eEEEEccCCCCCCCCCCeEEEEEecCCCcccCCchhhHHHHHHhhcCCCccCeEecccccccccccccCCCCCCCCCccc
Q 003827 238 SYVIREETDPEKLLKRGTQITLYLKEDDKYEFSEPTRIQGLVKNYSQFVSFPIYTWQEKSRTIEVEEEEKPEEGEEQPEG 317 (793)
Q Consensus 238 ~~i~~~~~~~~~~~~~GT~I~L~Lk~d~~~e~~~~~~i~~li~~ys~fi~~pI~l~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (793)
|++...+ ...+||+|+||||+++. +|+++.+|+++|++||.|+.|||+++++
T Consensus 186 ~~v~~~~-----~~~rGTki~l~lKe~~~-ey~ee~rikeiVKK~S~Fv~yPI~l~~e---------------------- 237 (656)
T KOG0019|consen 186 YEIAEAS-----GLRTGTKIVIHLKEGDC-EFLEEKRIKEVVKKYSNFVSYPIYLNGE---------------------- 237 (656)
T ss_pred eEEeecc-----CccccceEEeeehhhhh-hhccHhHHHHHHhhccccccccchhhhh----------------------
Confidence 9999874 38999999999999999 9999999999999999999999999984
Q ss_pred ccccccccccccccceeeecCCCcccccCCCCCCHHHHHHHHHHHhcccCCCcceeeecccceeEEEEEEEeeCCCCCCc
Q 003827 318 EKKTKKTTKTEKYWDWELANETKPIWMRNPKEIEKDEYHEFYKKTFNEFLDPLAYTHFTTEGEVEFRSVLYIPGMGPLNN 397 (793)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~N~~~~iW~r~~~~v~~eey~~fyk~~~~~~~~pl~~~h~~~eg~~~~~~ll~iP~~~p~~~ 397 (793)
.+|+.+|||+|+|.+||.++|.+|||+++++|++||++.||++||+++||++||||.++||++
T Consensus 238 -----------------k~N~tKpiW~rnp~dit~eey~eFYksl~ndw~d~lav~hf~~eg~lefrail~vP~rap~~l 300 (656)
T KOG0019|consen 238 -----------------RVNNLKAIWTMNPKEVNEEEHEEFYKSVSGDWDDPLYVLHFKTDGPLSIRSIFYIPKRAPNSM 300 (656)
T ss_pred -----------------hhhccCcccccCchhhhHHHHHHHHHhhcccccchhhHhhhccccceEEEEEEeccccCcchh
Confidence 379999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccceEEEeeeeeeccCCCCCCCcccccccceeecCCCCCCcccHHhhhccHHHHHHHHHHHHHHHHHHHhhhh
Q 003827 398 EEIMNPKTKNIRLYVKRVFISDDFDGELFPRYLSFVKGVVDSDDLPLNVSREILQESRIVRIMRKRLVRKTFDMIQDISQ 477 (793)
Q Consensus 398 ~~~~~~~~~~i~LYv~rVfI~D~~~~~LlP~wl~FvrGVVDS~DLpLNvSRE~LQ~~~~l~~Irk~l~~k~l~~l~~la~ 477 (793)
|+ .+++++||+||||||||+|+|. +++|+||+||+|||||+|||||+|||+||+|++|++||+.|++|++++|.++|
T Consensus 301 F~-~~kk~n~i~Ly~rrv~I~d~~~-~lipe~l~fv~gvVdSeDlPLNiSremlQ~~~i~k~~rk~l~~k~l~~~~e~a- 377 (656)
T KOG0019|consen 301 FD-MRKKKNGIKLYARRVLITDDAG-DLIPEWLRFVRGVVDSEDIPLNLSREMLQENAVLRKLRKVLPQKILEMFQDLA- 377 (656)
T ss_pred hh-hhhccCceEEEEEEEecCchhH-HHHHHHhchheeccccccCccchhHHHHhhhhHHHHHHHHHHHHHHHHHHHHh-
Confidence 98 4578899999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHHHHHHhHHhheecccCcccHHh-hcCccceeeccCCCcccCHHHHHHhcccCCCeEEEEecCCHHHHhhCh
Q 003827 478 SENKEDYKKFWENFGRFLKLGCVEDSGNHKR-LAPLLRFYTSKSEEELISLDEYVENMGEKQNAIYYLATDSLKSAKSAP 556 (793)
Q Consensus 478 ~~d~e~y~kf~~~fg~~lK~G~~eD~~~~~~-l~~LLrF~Ts~~~~~~~SL~eYv~rmke~Qk~IYY~~~~s~~~~~~Sp 556 (793)
+|+|+|++||++||++||+||++|.+|+.+ +++||||+||+++++++||++|++||+++|+.|||++|+|+.++++||
T Consensus 378 -~d~e~Y~kFy~~f~~~lk~gi~e~s~~~~k~~a~lLry~ss~s~~~~~Sl~dYv~rm~~~qk~iyyi~~~s~~~~~~sp 456 (656)
T KOG0019|consen 378 -KDAEKYKKFFKNYGLFLKEGIVTASEQQVKEIAKLLRYESSKSGEGATSLDDYVERMREGQKNIYYITAPNRQLAESSP 456 (656)
T ss_pred -hhHHHHHHHHHHHhhhhhhcccchhhhhhhHHHHHhhhhccccccccccHHHHHHhhcccccceEEeccchhhhhhcch
Confidence 899999999999999999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhcCceEEecCCCchHHHHHHHhhccCcceeeccccccCCCCchhHhh--HhhHHHHHHHHHHHHHHhccceeEE
Q 003827 557 FLEKLVQKDIEVLYLIEPIDEVAIQNLQTFNEKKFVDISKEDLELGDEDEVKE--RETKQEFNLLCDWIKQQLGDKVAKV 634 (793)
Q Consensus 557 ~lE~~~~kG~eVL~l~dpiDE~~l~~L~e~~gkkf~~V~k~~l~l~~~~e~~~--e~~~~e~~~L~~~lk~~L~~kV~~V 634 (793)
|+|+++++|+|||||++||||+++++|++|+||+|++|+++++++++.+++++ ++.+++|+.||+|||++||++|++|
T Consensus 457 ~~E~~k~~~~evly~~ep~DE~~~~~Lk~~~~k~lVsvtkEglel~e~ee~~~k~ee~k~efe~lck~mK~iL~~kVekV 536 (656)
T KOG0019|consen 457 YYEAFKKKNYEVLFMYEPADEVVLLGLKEFKGKKLVSVTKEGVELPEDDEEKAKDEESKKEFEELCKWMKEILGSKVEKV 536 (656)
T ss_pred HHHHHHhcCceeEeeeccHHHHHHHhhhhhcccceeccchhhccCCccchhHHHHHHHHHHHHHHHHHHHHHhcCceEEE
Confidence 99999999999999999999999999999999999999999999986555433 6677899999999999999999999
Q ss_pred EEeecCCCCCeEEEeCCCCccHHHHHHHHHHhcCCCCcccccccceeEEeCCCChHHHHHHHhhhcCCCchHHHHHHHHH
Q 003827 635 QVSKRLSSSPCVLVSGKFGWSANMERLMKAQALGDTSSLEFMRGRRILEINPDHPIVKDLNAACKNAPDSTDAKRAVDLL 714 (793)
Q Consensus 635 ~vS~RL~~sP~~lv~~e~g~s~~Merimkaq~~~d~~~~~~~~~kk~LEINp~HpLIk~L~~~~~~~~~d~~~~~l~~lL 714 (793)
++|+||+++|||||+++|||+++|+|+|+||+..|++.++||.++++|||||+||||+.|.+++++|+++ .+++++.||
T Consensus 537 ~vs~RlvssPc~I~t~~~gwsAnmeriMkAqal~d~s~~~ym~~kk~lEINP~hpivk~L~~~~~~dk~d-~~k~lv~ll 615 (656)
T KOG0019|consen 537 TVNNRLVSHPAMITTLEYGWAARMERIMKAQALTDNETMGYMKAKKHLEINPDHPLVKTLRQLRESDKND-TAKDLVEQL 615 (656)
T ss_pred EecCcccCCceEEEecccccchhHHHHHhhhhccccChhhhccccceeeeCCCChHHHHHHHHHhcCcch-hHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999887 999999999
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHHHcCCCCCCC
Q 003827 715 YDTALISSGFTPDSPADLGNKIYEMMAMALGGRWGRS 751 (793)
Q Consensus 715 yd~ALL~sG~~leDp~~fa~ri~~LL~~~L~~~~~~~ 751 (793)
|+||||++||+++||+.|+.|||+||.++|+ ++++
T Consensus 616 fetALlssGfsl~dP~~~~~ri~~ml~~~l~--~~e~ 650 (656)
T KOG0019|consen 616 YETALISAGFSLDDPQTMVGRINRLLKSGLG--RDED 650 (656)
T ss_pred HHHHHHHcCCCcCChHHHhhHHHHHHHHHhc--cCCC
Confidence 9999999999999999999999999999999 6654
No 3
>PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional
Probab=100.00 E-value=6.1e-168 Score=1459.33 Aligned_cols=656 Identities=46% Similarity=0.826 Sum_probs=593.8
Q ss_pred ccccchhhHHHHHHHHHHccCCCchHHHHHhHhhHhhHHHhhhhhhccCCCCCCCCCCceEEEEECCCCcEEEEEeCCCC
Q 003827 81 EKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIG 160 (793)
Q Consensus 81 e~~~Fq~e~~~Ll~ll~~~LYs~~~vflRELIsNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiG 160 (793)
|+|+||||+++||+||+|+|||++++|||||||||+|||+|+||++++++.+....+.+.|+|..|+++++|+|.|||+|
T Consensus 3 e~~~Fqae~~~Ll~lli~slYs~~~iflRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~i~~d~~~~~L~I~DnGiG 82 (701)
T PTZ00272 3 ETFAFQAEINQLMSLIINTFYSNKEIFLRELISNASDACDKIRYQSLTDPSVLGESPRLCIRVVPDKENKTLTVEDNGIG 82 (701)
T ss_pred ceEecHHHHHHHHHHHHhcccCCccHhHHHHHhhHHHHHHHHHHHhcCCchhcCCCCceEEEEEEcCCCCEEEEEECCCC
Confidence 78999999999999999999999999999999999999999999999999887777788999999988899999999999
Q ss_pred CCHHHHHHHHhhhcccCchhHHHHhhhcccCCCCCccccccccccceecccccEEEEEEecCCCCCeEEEEEccCCceEE
Q 003827 161 MTKEELVDCLGTIAQSGTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADSSSYV 240 (793)
Q Consensus 161 Mt~eeL~~~L~tIa~Sgt~~f~~~l~~~~~~~~d~~~IGqFGIGf~S~F~VadkV~V~Tr~~~~~~~~~w~s~~~~~~~i 240 (793)
||++||.++||+||+||++.|+++++. +.+..+|||||||||||||||++|+|+||+.+ +.+|.|+++|++.|++
T Consensus 83 Mt~edl~~~LgtIa~SGt~~f~~~~~~----~~~~~~iGqFGvGfyS~Fmvad~V~V~Srs~~-~~~~~W~s~~~g~y~i 157 (701)
T PTZ00272 83 MTKADLVNNLGTIARSGTKAFMEALEA----GGDMSMIGQFGVGFYSAYLVADRVTVTSKNNS-DESYVWESSAGGTFTI 157 (701)
T ss_pred CCHHHHHHHhhhhhhcchHHHHHHhhc----cCCccccCCCCcceEEEEEeccEEEEEEecCC-CceEEEEECCCCcEEE
Confidence 999999999999999999999988862 34678999999999999999999999999876 5799999999999999
Q ss_pred EEccCCCCCCCCCCeEEEEEecCCCcccCCchhhHHHHHHhhcCCCccCeEecccccccccccccCCC------CCCC--
Q 003827 241 IREETDPEKLLKRGTQITLYLKEDDKYEFSEPTRIQGLVKNYSQFVSFPIYTWQEKSRTIEVEEEEKP------EEGE-- 312 (793)
Q Consensus 241 ~~~~~~~~~~~~~GT~I~L~Lk~d~~~e~~~~~~i~~li~~ys~fi~~pI~l~~~~~~~~~~~~~~~~------~~~~-- 312 (793)
.+++ ....++||+|+||||++.. +|++.++|+++|++||.|++|||+++..++.+.++++++++ ++++
T Consensus 158 ~~~~---~~~~~~GT~I~L~Lk~d~~-ef~~~~~i~~li~kYs~fi~~PI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (701)
T PTZ00272 158 TSTP---ESDMKRGTRITLHLKEDQM-EYLEPRRLKELIKKHSEFIGYDIELMVEKTTEKEVTDEDEEDTKKADEDGEEP 233 (701)
T ss_pred EeCC---CCCCCCCCEEEEEECCchH-HhccHHHHHHHHHHhccccCcceEEeeccccccccCcchhhhccccccccccc
Confidence 8864 2345899999999999998 99999999999999999999999998665544433322100 0111
Q ss_pred ---CCcc--cccccccccccccccceeeecCCCcccccCCCCCCHHHHHHHHHHHhcccCCCcceeeecccceeEEEEEE
Q 003827 313 ---EQPE--GEKKTKKTTKTEKYWDWELANETKPIWMRNPKEIEKDEYHEFYKKTFNEFLDPLAYTHFTTEGEVEFRSVL 387 (793)
Q Consensus 313 ---~~~~--~~~~~~~~~~~~~~~~~~~~N~~~~iW~r~~~~v~~eey~~fyk~~~~~~~~pl~~~h~~~eg~~~~~~ll 387 (793)
++++ +++++|++++++++++|+++|+.+|||+|+|+++++++|++||++++++|.+||+|+||++||+++|+|||
T Consensus 234 ~~~~~~~~~~~~~~k~~~~~~~~~~~e~iN~~~~lW~r~~~~i~~eey~~Fyk~~~~~~~~Pl~~ih~~~eg~~~~~~ll 313 (701)
T PTZ00272 234 KVEEVKEGDEGKKKKTKKVKEVTKEYEVQNKHKPLWTRDPKDVTKEEYAAFYKAISNDWEDPAATKHFSVEGQLEFRSIM 313 (701)
T ss_pred ccccccccccccccccccccccccchhhcccCcCCeecCcccCCHHHHHHHHHHhcCCcCCCceeeeeccCCceeeEEEE
Confidence 1111 12345677788888999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCCCCCccccccccccceEEEeeeeeeccCCCCCCCcccccccceeecCCCCCCcccHHhhhccHHHHHHHHHHHHH
Q 003827 388 YIPGMGPLNNEEIMNPKTKNIRLYVKRVFISDDFDGELFPRYLSFVKGVVDSDDLPLNVSREILQESRIVRIMRKRLVRK 467 (793)
Q Consensus 388 ~iP~~~p~~~~~~~~~~~~~i~LYv~rVfI~D~~~~~LlP~wl~FvrGVVDS~DLpLNvSRE~LQ~~~~l~~Irk~l~~k 467 (793)
|||+.+|+++|+ .+...++|+||||||||+|+|+ +|||+||+||||||||+|||||||||+||+|++|++||+.|++|
T Consensus 314 yiP~~~~~~~~~-~~~~~~~i~LY~~rVfI~d~~~-~llP~~l~FvkGVVDS~DLpLNvSRE~LQ~~~~l~~i~~~i~~k 391 (701)
T PTZ00272 314 FVPKRAPFDMFE-PNKKRNNIKLYVRRVFIMDNCE-DLCPDWLGFVKGVVDSEDLPLNISRENLQQNKILKVIRKNIVKK 391 (701)
T ss_pred EeCCCCccchhh-hhhccCceEEEEeeEEEecchh-hhhHHHHhheeEEeecCCCCCccCHHHHccCHHHHHHHHHHHHH
Confidence 999999999886 3335789999999999999999 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhccCHHHHHHHHHHHhHHhheecccCcccHHhhcCccceeeccCCCcccCHHHHHHhcccCCCeEEEEecC
Q 003827 468 TFDMIQDISQSENKEDYKKFWENFGRFLKLGCVEDSGNHKRLAPLLRFYTSKSEEELISLDEYVENMGEKQNAIYYLATD 547 (793)
Q Consensus 468 ~l~~l~~la~~~d~e~y~kf~~~fg~~lK~G~~eD~~~~~~l~~LLrF~Ts~~~~~~~SL~eYv~rmke~Qk~IYY~~~~ 547 (793)
++++|.++| +++++|.+||++||.+||+|+++|..||++|++||||+||.++++++||+||++|||++|+.|||++|+
T Consensus 392 i~~~l~~la--~~~~~y~~f~~~~g~~lK~G~~~D~~~~~~l~~Llrf~ss~~~~~~~sL~eYv~rmk~~Q~~IYY~~~~ 469 (701)
T PTZ00272 392 CLEMFDEVA--ENKEDYKQFYEQFGKNIKLGIHEDTANRKKLMELLRFYSTESGEEMTTLKDYVTRMKAGQKSIYYITGD 469 (701)
T ss_pred HHHHHHHHh--hCHHHHHHHHHHHhhhhheeeccCHhHHHHHHHhhceeecCCCCceeeHHHHHHhhccCCceEEEEeCC
Confidence 999999999 578999999999999999999999999999999999999987678999999999999999999999999
Q ss_pred CHHHHhhChhHHHHHhcCceEEecCCCchHHHHHHHhhccCcceeeccccccCCCCchhH-hh-HhhHHHHHHHHHHHHH
Q 003827 548 SLKSAKSAPFLEKLVQKDIEVLYLIEPIDEVAIQNLQTFNEKKFVDISKEDLELGDEDEV-KE-RETKQEFNLLCDWIKQ 625 (793)
Q Consensus 548 s~~~~~~Sp~lE~~~~kG~eVL~l~dpiDE~~l~~L~e~~gkkf~~V~k~~l~l~~~~e~-~~-e~~~~e~~~L~~~lk~ 625 (793)
|++++++|||+|.|++||||||||+||||||||++|++|+|++|++|+++++++++.+++ .+ ++.++++++||+|||+
T Consensus 470 s~~~~~~sP~lE~~~~kg~EVL~l~dpiDe~~i~~l~ey~~k~f~sV~~~~~~l~~~~~e~~~~~~~~~~~~~L~~~~k~ 549 (701)
T PTZ00272 470 SKKKLETSPFIEQARRRGLEVLFMTEPIDEYVMQQVKDFEDKKFACLTKEGVHFEESEEEKQQREEEKAACEKLCKTMKE 549 (701)
T ss_pred CHHHHHhChHHHHHHhCCCeEEEeCCcHHHHHHHHHHhcCCCceEecccccccccccccchhhhhhhHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999988643332 11 3445689999999999
Q ss_pred HhccceeEEEEeecCCCCCeEEEeCCCCccHHHHHHHHHHhcCCCCcccccccceeEEeCCCChHHHHHHHhhhcCCCch
Q 003827 626 QLGDKVAKVQVSKRLSSSPCVLVSGKFGWSANMERLMKAQALGDTSSLEFMRGRRILEINPDHPIVKDLNAACKNAPDST 705 (793)
Q Consensus 626 ~L~~kV~~V~vS~RL~~sP~~lv~~e~g~s~~Merimkaq~~~d~~~~~~~~~kk~LEINp~HpLIk~L~~~~~~~~~d~ 705 (793)
+|+++|.+|++|+||++||||||++++|++++|+|||++|++++..+..+|.++++|||||+||||++|++++..+++++
T Consensus 550 ~L~~kV~~VkvS~RL~~sPa~lv~~e~g~s~~Merimkaq~~~~~~~~~~~~~kkiLEINP~HpiIk~L~~~~~~~~~~~ 629 (701)
T PTZ00272 550 VLGDKVEKVIVSERLSTSPCILVTSEFGWSAHMEQIMRNQALRDSSMAQYMMSKKTMELNPRHPIIKELRRRVGADENDK 629 (701)
T ss_pred HhCCcccEEEEeccCCCCCeEEEecccchhHHHHHHHHhcccccccccccccCCeEEEECCCCHHHHHHHHHhhcccchH
Confidence 99999999999999999999999999999999999999997644333345678999999999999999988765566667
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHcCCCCCCC
Q 003827 706 DAKRAVDLLYDTALISSGFTPDSPADLGNKIYEMMAMALGGRWGRS 751 (793)
Q Consensus 706 ~~~~l~~lLyd~ALL~sG~~leDp~~fa~ri~~LL~~~L~~~~~~~ 751 (793)
.++++|+||||+|||++|++++||+.|++|+++||..+|+ ++++
T Consensus 630 ~~~~la~~LyD~AlL~~G~~leDp~~f~~Ri~~lL~~~l~--~~~~ 673 (701)
T PTZ00272 630 AVKDLVFLLFDTSLLTSGFQLEDPTGYAERINRMIKLGLS--LDEE 673 (701)
T ss_pred HHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHHHhcC--CCcc
Confidence 7999999999999999999999999999999999988899 7665
No 4
>PTZ00130 heat shock protein 90; Provisional
Probab=100.00 E-value=1.3e-166 Score=1446.56 Aligned_cols=661 Identities=43% Similarity=0.746 Sum_probs=593.5
Q ss_pred CCcccccchhhHHHHHHHHHHccCCCchHHHHHhHhhHhhHHHhhhhhhccCCCCCCCCCCceEEEEECCCCcEEEEEeC
Q 003827 78 TSGEKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDT 157 (793)
Q Consensus 78 ~~~e~~~Fq~e~~~Ll~ll~~~LYs~~~vflRELIsNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~Dn 157 (793)
...++|+||+|+++||+||+|+|||+++||||||||||+|||+|+||++++++.++....++.|+|..|+++++|+|+||
T Consensus 63 ~~~e~~~FQaEv~~Lldiii~sLYS~keIFLRELISNAsDAldKlr~~~lt~~~~~~~~~~~~I~I~~D~~~~tLtI~Dn 142 (814)
T PTZ00130 63 SGIEQHQYQTEVTRLMDIIVNSLYTQKEVFLRELISNAADALEKIRFLSLSDESVLGEEKKLEIRISANKEKNILSITDT 142 (814)
T ss_pred cccceeehHHHHHHHHHHHhhccCCCCCceeehHhhhHHHHHHHHHHHHcCCchhcCCCCCceEEEEECCCCCEEEEEEC
Confidence 45789999999999999999999999999999999999999999999999999888878889999999999999999999
Q ss_pred CCCCCHHHHHHHHhhhcccCchhHHHHhhhcccCCCCCccccccccccceecccccEEEEEEecCCCCCeEEEEEccCCc
Q 003827 158 GIGMTKEELVDCLGTIAQSGTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADSS 237 (793)
Q Consensus 158 GiGMt~eeL~~~L~tIa~Sgt~~f~~~l~~~~~~~~d~~~IGqFGIGf~S~F~VadkV~V~Tr~~~~~~~~~w~s~~~~~ 237 (793)
|||||++||.++|||||+|||+.|+++++. .+.+..+||||||||||||||||+|+|+||+.+ +.+|.|+|.|++.
T Consensus 143 GIGMT~eEl~~nLgTIA~Sgt~~F~~~l~~---~~~~~~lIGQFGVGFYSaFmVAdkV~V~Trs~~-~~~~~W~s~g~g~ 218 (814)
T PTZ00130 143 GIGMTKEDLINNLGTIAKSGTSNFLEAISK---SGGDMSLIGQFGVGFYSAFLVADKVIVYTKNNN-DEQYIWESTADAK 218 (814)
T ss_pred CCCCCHHHHHHHhhhhcccccHHHHHHhhc---cCCCcccccccccchhheeeecCEEEEEEcCCC-CceEEEEECCCCc
Confidence 999999999999999999999999998873 234678999999999999999999999999977 7789999999999
Q ss_pred eEEEEccCCCCCCCCCCeEEEEEecCCCcccCCchhhHHHHHHhhcCCCccCeEecccccccccccccCCC---CCCC--
Q 003827 238 SYVIREETDPEKLLKRGTQITLYLKEDDKYEFSEPTRIQGLVKNYSQFVSFPIYTWQEKSRTIEVEEEEKP---EEGE-- 312 (793)
Q Consensus 238 ~~i~~~~~~~~~~~~~GT~I~L~Lk~d~~~e~~~~~~i~~li~~ys~fi~~pI~l~~~~~~~~~~~~~~~~---~~~~-- 312 (793)
|+|.+++ .+...++||+|+||||++.. +|++.++|++||++||.||+|||++++.+++++++++++.. ++++
T Consensus 219 y~I~e~~--~~~~~~rGT~I~LhLked~~-efl~~~~ik~likkYS~fI~~PI~l~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (814)
T PTZ00130 219 FTIYKDP--RGSTLKRGTRISLHLKEDAT-NLMNDKKLVDLISKYSQFIQYPIYLLHENVYTEEVLADIAKEMENDPNYD 295 (814)
T ss_pred EEEEECC--CCCCCCCCcEEEEEECCchh-hhccHHHHHHHHHHhhccCCCCEEEccccccccccccccccccccccccc
Confidence 9999875 33356899999999999998 99999999999999999999999998765444444321100 0110
Q ss_pred --CCcc-cccccccccccccccceeeecCCCcccccCCCCCCHHHHHHHHHHHhcccCCCcceeeecccceeEEEEEEEe
Q 003827 313 --EQPE-GEKKTKKTTKTEKYWDWELANETKPIWMRNPKEIEKDEYHEFYKKTFNEFLDPLAYTHFTTEGEVEFRSVLYI 389 (793)
Q Consensus 313 --~~~~-~~~~~~~~~~~~~~~~~~~~N~~~~iW~r~~~~v~~eey~~fyk~~~~~~~~pl~~~h~~~eg~~~~~~ll~i 389 (793)
++++ +++++|+|++++++++|+.+|+.+|||+|++++||+++|++|||+++++|++||+|+||++||+++|+|||||
T Consensus 296 ~~e~~~~~~~~~k~k~v~~~~~~~e~vN~~~aiW~r~~~eit~EeY~eFYk~l~~~~~dPl~~iH~~~Eg~~~~~~LLYI 375 (814)
T PTZ00130 296 SVKVEETDDPNKKTRTVEKKVKKWKLMNEQKPIWLRPPKELTDEDYKKFFSVLSGFNDEPLYHIHFFAEGEIEFKCLIYI 375 (814)
T ss_pred cccccccccccccccccccceeeeeeeccCCCcccCCcccCCHHHHHHHHHHhcCCccCCceeeeeccCCCeeEEEEEEe
Confidence 1111 1234567888888899999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCccccccccccceEEEeeeeeeccCCCCCCCcccccccceeecCCCCCCcccHHhhhccHHHHHHHHHHHHHHH
Q 003827 390 PGMGPLNNEEIMNPKTKNIRLYVKRVFISDDFDGELFPRYLSFVKGVVDSDDLPLNVSREILQESRIVRIMRKRLVRKTF 469 (793)
Q Consensus 390 P~~~p~~~~~~~~~~~~~i~LYv~rVfI~D~~~~~LlP~wl~FvrGVVDS~DLpLNvSRE~LQ~~~~l~~Irk~l~~k~l 469 (793)
|+.+|++++. .....++|+||||||||+|+|+ +|||+||+||||||||+|||||||||+||+|++|++||+.|++|++
T Consensus 376 P~~ap~~~~~-~~~~~~~ikLYvrrVfI~d~~~-dLLP~wL~FVkGVVDSeDLPLNVSRE~LQ~n~~l~~Irk~l~kkil 453 (814)
T PTZ00130 376 PSRAPSINDH-LFTKQNSIKLYVRRVLVADEFV-EFLPRYMSFVKGVVDSDDLPLNVSREQLQQNKILKAVSKRIVRKIL 453 (814)
T ss_pred cCCCccchhh-hhhccCceEEEEeeEEeecchh-hhhhHHHhhhEEEeecCCCCCccCHHHHccCHHHHHHHHHHHHHHH
Confidence 9999998764 2235799999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhc----------------------------cCHHHHHHHHHHHhHHhheecccCcccHHhhcCccceeeccCC
Q 003827 470 DMIQDISQS----------------------------ENKEDYKKFWENFGRFLKLGCVEDSGNHKRLAPLLRFYTSKSE 521 (793)
Q Consensus 470 ~~l~~la~~----------------------------~d~e~y~kf~~~fg~~lK~G~~eD~~~~~~l~~LLrF~Ts~~~ 521 (793)
++|.+++++ ++|++|.+||++||.+||+||++|..|+++|++||||+||++
T Consensus 454 ~~L~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~d~e~Y~kF~~~fg~~LK~Gv~eD~~nre~l~~LLrF~Ss~~- 532 (814)
T PTZ00130 454 DTFRTLYKEGKKNKETLRAELAKETDEEKKKEIQKKINEPSTYKLIYKEYRKYLKTGCYEDDINRNKIVKLLLFKTMLH- 532 (814)
T ss_pred HHHHHHHhhccccchhcccccccccccccccccccccccHHHHHHHHHHHHHHHHhHhhcCHHHHHHHHHhheeeeCCC-
Confidence 999999841 578999999999999999999999999999999999999975
Q ss_pred CcccCHHHHHHhcccCCCeEEEEecCCHHHHhhChhHHHHHhcCceEEecCCCchHHHHHHHhhccCcceeeccccccCC
Q 003827 522 EELISLDEYVENMGEKQNAIYYLATDSLKSAKSAPFLEKLVQKDIEVLYLIEPIDEVAIQNLQTFNEKKFVDISKEDLEL 601 (793)
Q Consensus 522 ~~~~SL~eYv~rmke~Qk~IYY~~~~s~~~~~~Sp~lE~~~~kG~eVL~l~dpiDE~~l~~L~e~~gkkf~~V~k~~l~l 601 (793)
++++||+||++||+++|+.|||++|++++++++|||+|.|+++|||||||+|||||++|++|.+|+|++|++|+++++++
T Consensus 533 ~~~~SL~eYv~rMke~Qk~IYY~t~~s~~~~~~SP~lE~~~~kg~EVL~l~d~iDE~~l~~L~e~~gk~~~sV~~~~~~~ 612 (814)
T PTZ00130 533 PKSISLDTYIENMKPDQKFIYYASGDSYEYLSKIPQLQIFKKKNIDVVFLTESVDESCVQRVQEYDGKKFKSIQKGEITF 612 (814)
T ss_pred CCccCHHHHHhhhccCCeEEEEEeCCCHHHHhcChHHHHHHhCCCeEEEeCCchHHHHHHHHHHhcCceEEEeccccccc
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred CCchhHhh--HhhHHHHHHHHHHHHHHhccceeEEEEeecCCCCCeEEEeCCCCccHHHHHHHHHHhcCCCCcccccccc
Q 003827 602 GDEDEVKE--RETKQEFNLLCDWIKQQLGDKVAKVQVSKRLSSSPCVLVSGKFGWSANMERLMKAQALGDTSSLEFMRGR 679 (793)
Q Consensus 602 ~~~~e~~~--e~~~~e~~~L~~~lk~~L~~kV~~V~vS~RL~~sP~~lv~~e~g~s~~Merimkaq~~~d~~~~~~~~~k 679 (793)
+..++++. ++.+++|++|++|||++|+++|.+|++|+||++||||||++++|||++|+|||++|.. ++.+..++.++
T Consensus 613 ~~~~~e~~~~~~~~~~~~~L~~~~k~~L~~~V~~V~vS~RL~~sPa~lv~~e~g~s~~Merimka~~~-~~~~~~~~~~k 691 (814)
T PTZ00130 613 ELTEDEKKKEEKVKKMYKALIDVISDTLRNQIFKVEISRRLVDAPCAVVSTEWGLSGQMEKLMKINVN-NSDQIKAMSGQ 691 (814)
T ss_pred cccccchhhhhHHHHHHHHHHHHHHHHhcCcccEEEEeccCCCCCcEEEecCccccHHHHHHHHHhhc-cccccccccCC
Confidence 64332211 3345679999999999999999999999999999999999999999999999999863 22223456789
Q ss_pred eeEEeCCCChHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHcCCCCCCC
Q 003827 680 RILEINPDHPIVKDLNAACKNAPDSTDAKRAVDLLYDTALISSGFTPDSPADLGNKIYEMMAMALGGRWGRS 751 (793)
Q Consensus 680 k~LEINp~HpLIk~L~~~~~~~~~d~~~~~l~~lLyd~ALL~sG~~leDp~~fa~ri~~LL~~~L~~~~~~~ 751 (793)
++|||||+||||++|+.+...+++++.+++++++|||||+|++|++++||+.|++||++||..+|+ +++.
T Consensus 692 ~iLEINp~Hpii~~L~~~~~~~~~~~~~~~~a~~Lyd~AlL~~G~~l~DP~~fa~ri~~ll~~~l~--~~~~ 761 (814)
T PTZ00130 692 KILEINPDHPIMIDLLKRSVSNPKDSQLTESIKIIYQSAKLASGFDLEDTADLAQIVYDHINQKLG--VDNN 761 (814)
T ss_pred eEEEECCCCHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcC--CCcc
Confidence 999999999999999876545555667999999999999999999999999999999999999998 6655
No 5
>COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-162 Score=1369.49 Aligned_cols=615 Identities=46% Similarity=0.770 Sum_probs=575.8
Q ss_pred CcccccchhhHHHHHHHHHHccCCCchHHHHHhHhhHhhHHHhhhhhhccCCCCCCCCCCceEEEEECCCCcEEEEEeCC
Q 003827 79 SGEKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTG 158 (793)
Q Consensus 79 ~~e~~~Fq~e~~~Ll~ll~~~LYs~~~vflRELIsNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnG 158 (793)
..|++.||+|+++||++|+|+|||||+||||||||||+|||+|+||+++++|......++++|+|.+|+++++|+|+|||
T Consensus 3 ~~e~~~Fq~ev~~ll~lmihSlYSnKeIFLRELISNAsDAidKlr~~al~~~~~~~~~~~~~I~i~~Dk~~kTLtI~DNG 82 (623)
T COG0326 3 EQETRGFQAEVKQLLDLMIHSLYSNKEIFLRELISNASDAIDKLRFEALSDPELGEGDSDLRIRISFDKDNKTLTISDNG 82 (623)
T ss_pred chhhhhhhHHHHHHHHHHHHhccCCcHHHHHHHHhhhHHHHHHHHHHhccCccccCCCCCceEEEEEcccCCEEEEEeCC
Confidence 35899999999999999999999999999999999999999999999999999888888999999999999999999999
Q ss_pred CCCCHHHHHHHHhhhcccCchhHHHHhhhcccCCCCCccccccccccceecccccEEEEEEecCCCCCeEEEEEccCCce
Q 003827 159 IGMTKEELVDCLGTIAQSGTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADSSS 238 (793)
Q Consensus 159 iGMt~eeL~~~L~tIa~Sgt~~f~~~l~~~~~~~~d~~~IGqFGIGf~S~F~VadkV~V~Tr~~~~~~~~~w~s~~~~~~ 238 (793)
||||++|++++|||||+|||++|++.+.+. . .+..+||||||||||||||||+|+|+||+++.+.+++|+|+|+|.|
T Consensus 83 IGMT~~Ev~~~LgTIAkSgT~~F~~~l~~~--~-~~~~lIGQFGVGFYSaFmVAdkV~V~T~~~~~~~~~~W~S~g~g~y 159 (623)
T COG0326 83 IGMTKDEVIENLGTIAKSGTKEFLESLSED--Q-KDSDLIGQFGVGFYSAFMVADKVTVITRSAGEDEAYHWESDGEGEY 159 (623)
T ss_pred CCCCHHHHHHHHHHhhhccHHHHHHHhccc--c-ccccccccccchhhheeeeeeeEEEEeccCCCCcceEEEEcCCCce
Confidence 999999999999999999999999998752 1 4788999999999999999999999999999899999999999999
Q ss_pred EEEEccCCCCCCCC-CCeEEEEEecCCCcccCCchhhHHHHHHhhcCCCccCeEecccccccccccccCCCCCCCCCccc
Q 003827 239 YVIREETDPEKLLK-RGTQITLYLKEDDKYEFSEPTRIQGLVKNYSQFVSFPIYTWQEKSRTIEVEEEEKPEEGEEQPEG 317 (793)
Q Consensus 239 ~i~~~~~~~~~~~~-~GT~I~L~Lk~d~~~e~~~~~~i~~li~~ys~fi~~pI~l~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (793)
+|.+++ ..+ +||+|+||||++.. +|+++++|+++|++||.||++||++.+++..+
T Consensus 160 tv~~~~-----~~~~~GT~I~L~Lk~~e~-efl~~~rl~~ivkkYSd~i~~PI~~~~~~~~~------------------ 215 (623)
T COG0326 160 TVEDID-----KEPRRGTEITLHLKEEED-EFLEEWRLREIVKKYSDHIAYPIYIEGEKEKD------------------ 215 (623)
T ss_pred EEeecc-----CCCCCCcEEEEEECCchH-HHhhhhHHHHHHHHHhcccccceEEeeecccc------------------
Confidence 999875 234 69999999999988 99999999999999999999999997653210
Q ss_pred ccccccccccccccceeeecCCCcccccCCCCCCHHHHHHHHHHHhcccCCCcceeeecccceeEEEEEEEeeCCCCCCc
Q 003827 318 EKKTKKTTKTEKYWDWELANETKPIWMRNPKEIEKDEYHEFYKKTFNEFLDPLAYTHFTTEGEVEFRSVLYIPGMGPLNN 397 (793)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~N~~~~iW~r~~~~v~~eey~~fyk~~~~~~~~pl~~~h~~~eg~~~~~~ll~iP~~~p~~~ 397 (793)
+.+.+|+.+|+.+|+|+|+++++++++|.+||+++.++|++||+|+|+++||.+++.++||||+.+||++
T Consensus 216 ----------~~~~~~e~iN~~~alW~r~ksei~~eeY~eFYk~~~~d~~~Pl~~~h~~~EG~~ey~~ll~iP~~aPfdl 285 (623)
T COG0326 216 ----------EEVIEWETINKAKALWTRNKSEITDEEYKEFYKHLAHDFDDPLLWIHNKVEGRLEYTALLFIPSKAPFDL 285 (623)
T ss_pred ----------ccchhHHHhccccCcccCChhhCChHHHHHHHHHhhcccCCCeEEEecccccceEEEEEEEccCCCCccc
Confidence 0034789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccceEEEeeeeeeccCCCCCCCcccccccceeecCCCCCCcccHHhhhccHHHHHHHHHHHHHHHHHHHhhhh
Q 003827 398 EEIMNPKTKNIRLYVKRVFISDDFDGELFPRYLSFVKGVVDSDDLPLNVSREILQESRIVRIMRKRLVRKTFDMIQDISQ 477 (793)
Q Consensus 398 ~~~~~~~~~~i~LYv~rVfI~D~~~~~LlP~wl~FvrGVVDS~DLpLNvSRE~LQ~~~~l~~Irk~l~~k~l~~l~~la~ 477 (793)
|+ +..++|++||||||||+|+|+ +|||+||+||||||||+|||||||||+||+|++++.||+.|++|++++|++||
T Consensus 286 ~~--~~~k~glkLYv~rVfI~Dd~~-~llP~yl~Fv~GvIDS~DLpLNvSRE~LQ~n~~l~~Irk~l~kkvl~~L~~La- 361 (623)
T COG0326 286 FR--RDRKRGLKLYVNRVFIMDDAE-DLLPNYLRFVRGVIDSEDLPLNVSREILQQNRILAAIRKALTKKVLSMLEKLA- 361 (623)
T ss_pred cc--ccccCCcEEEEeeeEEeCChh-hhhhHHHhhheeeeecCCCCcccCHHHHccCHHHHHHHHHHHHHHHHHHHHHH-
Confidence 96 567899999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHHHHHHhHHhheecccCcccHHhhcCccceeec-cCCCcccCHHHHHHhcccCCCeEEEEecCCHHHHhhCh
Q 003827 478 SENKEDYKKFWENFGRFLKLGCVEDSGNHKRLAPLLRFYTS-KSEEELISLDEYVENMGEKQNAIYYLATDSLKSAKSAP 556 (793)
Q Consensus 478 ~~d~e~y~kf~~~fg~~lK~G~~eD~~~~~~l~~LLrF~Ts-~~~~~~~SL~eYv~rmke~Qk~IYY~~~~s~~~~~~Sp 556 (793)
+++||+|.+||++||.+||+|+++|..|+++|++||||.|| .++++++||+|||+||||+|+.|||++|+|..++++||
T Consensus 362 ~~~~e~y~~f~~~fg~~LKeG~~eD~~n~e~l~~lLrf~St~~~~~~~~sl~eYv~rmke~q~~IyY~tges~~~~~~sP 441 (623)
T COG0326 362 KDDPEKYRKFWKQFGLVLKEGLYEDFENKEKLLDLLRFRSTSDSGEKTVSLEEYVSRMKEGQKQIYYITGESYQAAKGSP 441 (623)
T ss_pred hcCHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhEecccCCCccCcccHHHHHHhcccccceeEEeccccHHHHhcCc
Confidence 67899999999999999999999999999999999999995 45578999999999999999999999999999999999
Q ss_pred hHHHHHhcCceEEecCCCchHHHHHHHhhccCcceeeccccccCCCCchhH--hh-HhhHHHHHHHHHHHHHHhccceeE
Q 003827 557 FLEKLVQKDIEVLYLIEPIDEVAIQNLQTFNEKKFVDISKEDLELGDEDEV--KE-RETKQEFNLLCDWIKQQLGDKVAK 633 (793)
Q Consensus 557 ~lE~~~~kG~eVL~l~dpiDE~~l~~L~e~~gkkf~~V~k~~l~l~~~~e~--~~-e~~~~e~~~L~~~lk~~L~~kV~~ 633 (793)
++|.+++||||||||+|+||+++|..+.+|+|++|++|+++++++....++ .. ++.+.+|++|++++|++|+++|++
T Consensus 442 ~lE~~k~kgieVL~l~d~iDe~~l~~~~e~egk~~~~i~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~k~~L~~~vk~ 521 (623)
T COG0326 442 HLELFKAKGIEVLLLTDRIDEFMLTMLPEFEGKPFKSITKGDLDLELLEEEDEADSEEEKKEFKPLLERVKEILGDKVKD 521 (623)
T ss_pred hHHHHHhcCcEEEecCccchHHHhhhhhhccCCcceeeccccccccccchhhhhhhHHHHHHHHHHHHHHHHHhcCccce
Confidence 999999999999999999999999999999999999999999987665433 22 566778999999999999999999
Q ss_pred EEEeecCCCCCeEEEeCCCCccHHHHHHHHHHhcCCCCcccccccceeEEeCCCChHHHHHHHhhhcCCCchHHHHHHHH
Q 003827 634 VQVSKRLSSSPCVLVSGKFGWSANMERLMKAQALGDTSSLEFMRGRRILEINPDHPIVKDLNAACKNAPDSTDAKRAVDL 713 (793)
Q Consensus 634 V~vS~RL~~sP~~lv~~e~g~s~~Merimkaq~~~d~~~~~~~~~kk~LEINp~HpLIk~L~~~~~~~~~d~~~~~l~~l 713 (793)
|++|+||+++|||++++.++++.+|+|+|++|++..+ ..+++|||||+||||++|.... |...+.+++++
T Consensus 522 Vr~s~rl~dspa~l~~~~~~~~~~m~r~l~~~~~~~~------~~k~ilEiNp~h~lv~~L~~~~----d~~~~~~~~~l 591 (623)
T COG0326 522 VRLSHRLTDSPACLTTDGADLSTQMERLLKAQGQEVP------ESKKILEINPNHPLVKKLASLE----DEASVADLVEL 591 (623)
T ss_pred eEeecccCCCcceeecCccchhHHHHHHHHhccccCC------ccccceeeCcccHHHHHHHhcc----cHHHHHHHHHH
Confidence 9999999999999999999999999999999875421 5789999999999999999874 45679999999
Q ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHHHHc
Q 003827 714 LYDTALISSGFTPDSPADLGNKIYEMMAMAL 744 (793)
Q Consensus 714 Lyd~ALL~sG~~leDp~~fa~ri~~LL~~~L 744 (793)
||+||||++|++++||+.|++|++++|.+++
T Consensus 592 lydqAll~eg~~~~dp~~F~~rln~ll~~~~ 622 (623)
T COG0326 592 LYDQALLAEGGPLEDPAAFIERLNDLLSRLL 622 (623)
T ss_pred HHHHHHHhCCCCccCHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999998875
No 6
>PRK05218 heat shock protein 90; Provisional
Probab=100.00 E-value=6.9e-143 Score=1248.53 Aligned_cols=607 Identities=47% Similarity=0.775 Sum_probs=562.0
Q ss_pred cccccchhhHHHHHHHHHHccCCCchHHHHHhHhhHhhHHHhhhhhhccCCCCCCCCCCceEEEEECCCCcEEEEEeCCC
Q 003827 80 GEKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGI 159 (793)
Q Consensus 80 ~e~~~Fq~e~~~Ll~ll~~~LYs~~~vflRELIsNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGi 159 (793)
.|+++||+|+++||++|+++||+||++|||||||||+|||+|+||.+++++....+..+++|+|.+++++++|+|+|||+
T Consensus 3 ~e~~~Fq~e~~~ll~ll~~~LYs~~~v~lRELiqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~i~I~DnG~ 82 (613)
T PRK05218 3 METGEFQAEVKQLLHLMIHSLYSNKEIFLRELISNASDAIDKLRFEALTDPALYEGDGDLKIRISFDKEARTLTISDNGI 82 (613)
T ss_pred cceeehhHhHHHHHHHHhhhhcCCchHHHHHHHhCHHHHHHHHHHHhccCccccCCCCCcEEEEEEcCCCCeEEEEECCC
Confidence 58999999999999999999999999999999999999999999999999887777778899999999888999999999
Q ss_pred CCCHHHHHHHHhhhcccCchhHHHHhhhcccCCCCCccccccccccceecccccEEEEEEecCC-CCCeEEEEEccCCce
Q 003827 160 GMTKEELVDCLGTIAQSGTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPR-SDKQYVWEAEADSSS 238 (793)
Q Consensus 160 GMt~eeL~~~L~tIa~Sgt~~f~~~l~~~~~~~~d~~~IGqFGIGf~S~F~VadkV~V~Tr~~~-~~~~~~w~s~~~~~~ 238 (793)
|||++|+..+|++||+||++.|+++++.. ...+..+||+|||||||+||||++|+|+||+.+ ++.++.|.+.+++.|
T Consensus 83 GMt~eel~~~l~~ia~Sg~~~f~~k~~~~--~~~~~~~iG~fGiGf~S~f~va~~v~V~Sr~~~~~~~~~~w~~~g~~~~ 160 (613)
T PRK05218 83 GMTREEVIENLGTIAKSGTKEFLEKLKGD--QKKDSQLIGQFGVGFYSAFMVADKVTVITRSAGPAAEAVRWESDGEGEY 160 (613)
T ss_pred CCCHHHHHHHHHhhccccchhHHHHhhcc--cccccccccccCcCchhhhhccCEEEEEEcCCCCCCceEEEEEeCCcee
Confidence 99999999999999999999999988531 123568999999999999999999999999977 567999999999999
Q ss_pred EEEEccCCCCCCCCCCeEEEEEecCCCcccCCchhhHHHHHHhhcCCCccCeEecccccccccccccCCCCCCCCCcccc
Q 003827 239 YVIREETDPEKLLKRGTQITLYLKEDDKYEFSEPTRIQGLVKNYSQFVSFPIYTWQEKSRTIEVEEEEKPEEGEEQPEGE 318 (793)
Q Consensus 239 ~i~~~~~~~~~~~~~GT~I~L~Lk~d~~~e~~~~~~i~~li~~ys~fi~~pI~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (793)
++.+.+ ..++||+|+|+||++.. +|++.++|+++|++||.|++|||+++++
T Consensus 161 ~i~~~~-----~~~~GT~I~l~Lk~~~~-e~~e~~~i~~li~kys~~l~~PI~~~~~----------------------- 211 (613)
T PRK05218 161 TIEEIE-----KEERGTEITLHLKEDED-EFLDEWRIRSIIKKYSDFIPVPIKLEKE----------------------- 211 (613)
T ss_pred EEeECC-----CCCCCcEEEEEECcchh-hhcCHHHHHHHHHHHHhcCCCCEEEecc-----------------------
Confidence 998763 34799999999999998 9999999999999999999999999542
Q ss_pred cccccccccccccceeeecCCCcccccCCCCCCHHHHHHHHHHHhcccCCCcceeeecccceeEEEEEEEeeCCCCCCcc
Q 003827 319 KKTKKTTKTEKYWDWELANETKPIWMRNPKEIEKDEYHEFYKKTFNEFLDPLAYTHFTTEGEVEFRSVLYIPGMGPLNNE 398 (793)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~N~~~~iW~r~~~~v~~eey~~fyk~~~~~~~~pl~~~h~~~eg~~~~~~ll~iP~~~p~~~~ 398 (793)
+|+++|+++|+|+++++++++++|..||+.++++|.+||+++||+++|++.|+|+||+|+.+|++++
T Consensus 212 -------------~~~~in~~~~~w~~~~~~i~~~~~~~fy~~~~~~~~~pl~~i~~~~e~~~~~~gll~iP~~~~~~~~ 278 (613)
T PRK05218 212 -------------EEETINSASALWTRSKSEITDEEYKEFYKHLAHDFDDPLFWIHNNVEGPFEYTGLLYIPKKAPFDLF 278 (613)
T ss_pred -------------cceeecCCccceecCCccccHHHHHHHhhhhcccccCCcEEEEcccCCceEEEEEEEeCCCCccchh
Confidence 3689999999999999999999999999999999999999999999999999999999999999987
Q ss_pred ccccccccceEEEeeeeeeccCCCCCCCcccccccceeecCCCCCCcccHHhhhccHHHHHHHHHHHHHHHHHHHhhhhc
Q 003827 399 EIMNPKTKNIRLYVKRVFISDDFDGELFPRYLSFVKGVVDSDDLPLNVSREILQESRIVRIMRKRLVRKTFDMIQDISQS 478 (793)
Q Consensus 399 ~~~~~~~~~i~LYv~rVfI~D~~~~~LlP~wl~FvrGVVDS~DLpLNvSRE~LQ~~~~l~~Irk~l~~k~l~~l~~la~~ 478 (793)
+ +...++++||||||||+|+++ +|||+||+||||||||+|||||||||+||+|++|++||+.|++|++++|.+++ +
T Consensus 279 ~--~~~~~~~~lyvn~v~I~d~~~-~lLP~wl~Fv~GVVDs~dLplnvSRE~lq~~~~l~~i~~~l~~kv~~~l~~la-~ 354 (613)
T PRK05218 279 N--RDRKGGLKLYVKRVFIMDDAE-ELLPEYLRFVKGVIDSEDLPLNVSREILQEDRVVKKIRKAITKKVLDELEKLA-K 354 (613)
T ss_pred h--hcccccEEEEECcEEeeCchh-hhchHHHhheEEEeecCCCCCccCHHHHhcCHHHHHHHHHHHHHHHHHHHHHH-h
Confidence 5 446799999999999999999 99999999999999999999999999999999999999999999999999999 6
Q ss_pred cCHHHHHHHHHHHhHHhheecccCcccHHhhcCccceeeccCCCcccCHHHHHHhcccCCCeEEEEecCCHHHHhhChhH
Q 003827 479 ENKEDYKKFWENFGRFLKLGCVEDSGNHKRLAPLLRFYTSKSEEELISLDEYVENMGEKQNAIYYLATDSLKSAKSAPFL 558 (793)
Q Consensus 479 ~d~e~y~kf~~~fg~~lK~G~~eD~~~~~~l~~LLrF~Ts~~~~~~~SL~eYv~rmke~Qk~IYY~~~~s~~~~~~Sp~l 558 (793)
+|+++|++||++||.+||+||++|.+|+++|++||||+||+ +++++||+||++||+++|+.|||++++|++++++|||+
T Consensus 355 ~d~~~y~~f~~~~~~~lK~g~~~D~~~~~~~~~lL~f~ts~-~~~~~sL~ey~~rm~~~q~~Iyy~~~~~~~~~~~sp~~ 433 (613)
T PRK05218 355 NDREKYEKFWKEFGPVLKEGLYEDFANREKLAKLLRFASTH-EGKYVSLAEYVERMKEGQKKIYYITGDSREAAKNSPHL 433 (613)
T ss_pred hCHHHHHHHHHHHHHHHHhhhhccHHHHHHHHhhceeeecC-CCCcccHHHHHHhCcCCCceEEEEeCCCHHHHHhChHH
Confidence 89999999999999999999999999999999999999996 56899999999999999999999999999999999999
Q ss_pred HHHHhcCceEEecCCCchHHHHHHHhhccCcceeeccccccCCCC-ch-hHhh-HhhHHHHHHHHHHHHHHhccceeEEE
Q 003827 559 EKLVQKDIEVLYLIEPIDEVAIQNLQTFNEKKFVDISKEDLELGD-ED-EVKE-RETKQEFNLLCDWIKQQLGDKVAKVQ 635 (793)
Q Consensus 559 E~~~~kG~eVL~l~dpiDE~~l~~L~e~~gkkf~~V~k~~l~l~~-~~-e~~~-e~~~~e~~~L~~~lk~~L~~kV~~V~ 635 (793)
|.|+++|+||||+++|+|++++++|.+|+|++|++|+++++++++ .+ ++.. +..+++|++|++|+++.|+++|++|+
T Consensus 434 e~~~~~g~eVl~~~~~~De~~l~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~~~v~~V~ 513 (613)
T PRK05218 434 ELFKKKGIEVLLLTDPIDEFWISYLEEFDGKPFKSVARGDLDLGKEDEEEKEEKEEAEEEFKPLLERLKEALGDKVKDVR 513 (613)
T ss_pred HHHHhcCceEEEeCCccHHHHHHHHHHhcCCceEEeeccccccccccchhhhhhhhhHHHHHHHHHHHHHHhcCcceEEE
Confidence 999999999999999999999999999999999999999998865 11 1111 34456899999999999999999999
Q ss_pred EeecCCCCCeEEEeCCCCccHHHHHHHHHHhcCCCCcccccccceeEEeCCCChHHHHHHHhhhcCCCchHHHHHHHHHH
Q 003827 636 VSKRLSSSPCVLVSGKFGWSANMERLMKAQALGDTSSLEFMRGRRILEINPDHPIVKDLNAACKNAPDSTDAKRAVDLLY 715 (793)
Q Consensus 636 vS~RL~~sP~~lv~~e~g~s~~Merimkaq~~~d~~~~~~~~~kk~LEINp~HpLIk~L~~~~~~~~~d~~~~~l~~lLy 715 (793)
+|+||+++|||||++++|++++|+|+|++|+. .+..++++|||||+||||++|.+.. +++.++.++++||
T Consensus 514 ~s~rl~~~Pa~~v~~~~~~~~~mer~~~~~~~------~~~~~~~~LeiNp~hplI~~L~~~~----d~~~~~~~~~~Ly 583 (613)
T PRK05218 514 LSHRLTDSPACLVADEGDMSTQMEKLLKAAGQ------EVPESKPILEINPNHPLVKKLADEA----DEAKFKDLAELLY 583 (613)
T ss_pred EeccCCCCCeEEEeCccchHHHHHHHHHhhhh------cccccceEEEEcCCCHHHHHHHhcc----ChHHHHHHHHHHH
Confidence 99999999999999999999999999998752 1234789999999999999998742 2335999999999
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHHHcC
Q 003827 716 DTALISSGFTPDSPADLGNKIYEMMAMALG 745 (793)
Q Consensus 716 d~ALL~sG~~leDp~~fa~ri~~LL~~~L~ 745 (793)
+||||++|++++||+.|++|+++||.++++
T Consensus 584 d~AlL~~G~~~~d~~~~~~r~~~ll~~~~~ 613 (613)
T PRK05218 584 DQALLAEGGSLEDPAAFVKRLNELLLKLLA 613 (613)
T ss_pred HHHHHhCCCCccCHHHHHHHHHHHHHHhhC
Confidence 999999999999999999999999988753
No 7
>PRK14083 HSP90 family protein; Provisional
Probab=100.00 E-value=2e-130 Score=1134.13 Aligned_cols=576 Identities=24% Similarity=0.339 Sum_probs=506.6
Q ss_pred cccchhhHHHHHHHHHHccCCCchHHHHHhHhhHhhHHHhhhhhhccCCCCCCCCCCceEEEEE-CCCCcEEEEEeCCCC
Q 003827 82 KFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKP-DPENGTITITDTGIG 160 (793)
Q Consensus 82 ~~~Fq~e~~~Ll~ll~~~LYs~~~vflRELIsNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~-d~~~~~l~I~DnGiG 160 (793)
.++||+|+++||++|+++||++|.+|||||||||+|||+++|+.. ...+.+|+|.+ +.++++|+|+|||+|
T Consensus 2 ~~~Fqae~~~ll~ll~~~LYs~~~iflrELiqNA~DA~~~~~~~~--------~~~~~~I~I~~~d~~~~~l~I~DnGiG 73 (601)
T PRK14083 2 SHRFQVDLRGVIDLLSRHLYSSPRVYVRELLQNAVDAITARRALD--------PTAPGRIRIELTDAGGGTLIVEDNGIG 73 (601)
T ss_pred CccchHhHHHHHHHHHHhhcCCcHHHHHHHHHhHHHHHHhhhccC--------CCCCceEEEEEccCCCcEEEEEeCCCC
Confidence 489999999999999999999999999999999999999988753 12356788877 788899999999999
Q ss_pred CCHHHHHHHHhhhcccCchhHHHHhhhcccCCCCCccccccccccceecccccEEEEEEecCCCCCeEEEEEccCCceEE
Q 003827 161 MTKEELVDCLGTIAQSGTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADSSSYV 240 (793)
Q Consensus 161 Mt~eeL~~~L~tIa~Sgt~~f~~~l~~~~~~~~d~~~IGqFGIGf~S~F~VadkV~V~Tr~~~~~~~~~w~s~~~~~~~i 240 (793)
||.+++.++|++||+||++.|. +. ..+..+|||||||||||||||++|+|.||+.+++.++.|++.+++.|++
T Consensus 74 mt~eel~~~l~~ig~S~k~~~~--~~-----~~~~~~IG~FGIGf~S~F~vad~v~V~Tr~~~~~~~~~W~~~~~g~y~i 146 (601)
T PRK14083 74 LTEEEVHEFLATIGRSSKRDEN--LG-----FARNDFLGQFGIGLLSCFLVADEIVVVSRSAKDGPAVEWRGKADGTYSV 146 (601)
T ss_pred CCHHHHHHHHhhhccchhhhhh--hc-----ccccccccccccceEEEEEecCEEEEEeccCCCCceEEEEECCCCceEE
Confidence 9999999999999999988763 21 1245799999999999999999999999998667899999999999999
Q ss_pred EEccCCCCCCCCCCeEEEEEecCCCcccCCchhhHHHHHHhhcCCCccCeEecccccccccccccCCCCCCCCCcccccc
Q 003827 241 IREETDPEKLLKRGTQITLYLKEDDKYEFSEPTRIQGLVKNYSQFVSFPIYTWQEKSRTIEVEEEEKPEEGEEQPEGEKK 320 (793)
Q Consensus 241 ~~~~~~~~~~~~~GT~I~L~Lk~d~~~e~~~~~~i~~li~~ys~fi~~pI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (793)
...+ ....++||+|+|+++++.. +|+++++|++++++||.|++|||+++++
T Consensus 147 ~~~~---~~~~~~GT~I~L~l~~d~~-~~~~~~~i~~li~~ys~~i~~pI~l~~~------------------------- 197 (601)
T PRK14083 147 RKLE---TERAEPGTTVYLRPRPDAE-EWLERETVEELAKKYGSLLPVPIRVEGE------------------------- 197 (601)
T ss_pred EeCC---CCCCCCCCEEEEEecCchh-hhccHHHHHHHHHHHhccCCCCcccCCc-------------------------
Confidence 8742 2356899999999999988 9999999999999999999999999652
Q ss_pred cccccccccccceeeecCCCcccccCCCCCC--HHHHHHHHHHHhcccCCCcceeeecccceeEEEEEEE-eeCCCCCCc
Q 003827 321 TKKTTKTEKYWDWELANETKPIWMRNPKEIE--KDEYHEFYKKTFNEFLDPLAYTHFTTEGEVEFRSVLY-IPGMGPLNN 397 (793)
Q Consensus 321 ~~~~~~~~~~~~~~~~N~~~~iW~r~~~~v~--~eey~~fyk~~~~~~~~pl~~~h~~~eg~~~~~~ll~-iP~~~p~~~ 397 (793)
.+.+|+.+|||+++++++| ++||.+||+.+++ .+||+|+|+++||+.. +|+|| ||..+|++
T Consensus 198 ------------~~~iN~~~~lW~~~~~eit~~~eey~~Fyk~~~~--~~Pl~~ih~~~e~~~~-~~~Ly~iP~~~~~~- 261 (601)
T PRK14083 198 ------------KGGVNETPPPWTRDYPDPETRREALLAYGEELLG--FTPLDVIPLDVPSGGL-EGVAYVLPYAVSPA- 261 (601)
T ss_pred ------------eeeecCCCCCccCCccccCccHHHHHHHHHHhcC--CCchheeeecccchhh-eEEEEecCCCCCcc-
Confidence 1589999999999999998 9999999999998 6999999999999765 78887 69998874
Q ss_pred cccccccccceEEEeeeeeeccCCCCCCCcccccccceeecCCCCCCcccHHhhhccHHHHHHHHHHHHHHHHHHHhhhh
Q 003827 398 EEIMNPKTKNIRLYVKRVFISDDFDGELFPRYLSFVKGVVDSDDLPLNVSREILQESRIVRIMRKRLVRKTFDMIQDISQ 477 (793)
Q Consensus 398 ~~~~~~~~~~i~LYv~rVfI~D~~~~~LlP~wl~FvrGVVDS~DLpLNvSRE~LQ~~~~l~~Irk~l~~k~l~~l~~la~ 477 (793)
..++|+||||||||+|+|+ +|||+||+||||||||+|||||||||+||+|+++++||+.|++|++++|+++|
T Consensus 262 ------~~~~v~LY~~rVfI~d~~~-~lLP~wl~FvrGVVDS~DLpLNvSRE~LQ~~~~l~~ir~~i~kki~~~L~~la- 333 (601)
T PRK14083 262 ------ARRKHRVYLKRMLLSEEAE-NLLPDWAFFVRCVVNTDELRPTASREALYEDDALAAVREELGEAIRKWLIGLA- 333 (601)
T ss_pred ------ccCceEEEeeeeEeecchh-hhhHHHHHHheeeeecCCCCCccCHHHHccCHHHHHHHHHHHHHHHHHHHHHH-
Confidence 2479999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHHHHHHhHHhheecccCcccHHhhcCccceeeccCCCcccCHHHHHHhcccCCCeEEEEecC-CHHHHhhCh
Q 003827 478 SENKEDYKKFWENFGRFLKLGCVEDSGNHKRLAPLLRFYTSKSEEELISLDEYVENMGEKQNAIYYLATD-SLKSAKSAP 556 (793)
Q Consensus 478 ~~d~e~y~kf~~~fg~~lK~G~~eD~~~~~~l~~LLrF~Ts~~~~~~~SL~eYv~rmke~Qk~IYY~~~~-s~~~~~~Sp 556 (793)
++||++|++||++||.+||+|+++|.+|+++|++||||+||+ +.+||+||++|| +.|||++++ +..+++
T Consensus 334 ~~d~e~y~~f~~~~g~~lK~g~~~D~~~~~~l~~lL~f~ss~---~~~sL~eY~~r~----~~IyY~~~~~~~~~~~--- 403 (601)
T PRK14083 334 TTDPERLRRLLAVHHLGVKALASHDDELLRLILPWLPFETTD---GRMTLAEIRRRH----GVIRYTSSVDEFRQLA--- 403 (601)
T ss_pred hhCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhceeecCC---CCcCHHHHHHhC----CeEEEEcCHHHHHHHH---
Confidence 689999999999999999999999999999999999999997 569999999996 589999996 666664
Q ss_pred hHHHHHhcCceEEecCCCchHHHHHHHhh-ccCcceeeccccccC--CCCchhHhhHhhHHHHHHHHHHHHHHhccc-ee
Q 003827 557 FLEKLVQKDIEVLYLIEPIDEVAIQNLQT-FNEKKFVDISKEDLE--LGDEDEVKERETKQEFNLLCDWIKQQLGDK-VA 632 (793)
Q Consensus 557 ~lE~~~~kG~eVL~l~dpiDE~~l~~L~e-~~gkkf~~V~k~~l~--l~~~~e~~~e~~~~e~~~L~~~lk~~L~~k-V~ 632 (793)
+.|++||||||||++||||+++++|.+ |+|++|++|+++++. +...+ ...++++++|++|++++|+++ |+
T Consensus 404 --~~~~~kg~eVl~~~~~iDe~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~L~~~~~~ 477 (601)
T PRK14083 404 --PIARAQGMGVINGGYTYDSELLERLPRLRPGLTVERLDPAELTDRLEPLT----PEEELALRPFLAEAREVLAPFGCD 477 (601)
T ss_pred --HHHHHCCCeEEEeCCccHHHHHHHHHhhCCCCcEEEechhhhhhhccccc----hhhHHHHHHHHHHHHHHhCccceE
Confidence 689999999999999999999999999 999999999998873 43322 123567999999999999987 55
Q ss_pred EEEEeecCCCCCeEEEeCCCCccHHHHHHHHHHh-cCCCCc---c-----cccccceeEEeCCCChHHHHHHHhhhcCCC
Q 003827 633 KVQVSKRLSSSPCVLVSGKFGWSANMERLMKAQA-LGDTSS---L-----EFMRGRRILEINPDHPIVKDLNAACKNAPD 703 (793)
Q Consensus 633 ~V~vS~RL~~sP~~lv~~e~g~s~~Merimkaq~-~~d~~~---~-----~~~~~kk~LEINp~HpLIk~L~~~~~~~~~ 703 (793)
.|++|+||+++|||+|++++ .+|+++|+++. +.++.+ . .+..++++|||||+||||++|.+. .+
T Consensus 478 v~~~s~rl~~~Pa~~v~~e~---~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~~LeiN~~hpli~~l~~~----~d 550 (601)
T PRK14083 478 VVIRHFEPADLPALYLHDRA---AQHSREREEAVEEADDLWADILGSLDESQPAPRARLVLNLRNPLVRRLATL----GD 550 (601)
T ss_pred EEEEcCCCCCCCEEEEeCch---hHHHHHHHhhhhhcccchhhhhhhhhhcccccCeEEEECCCCHHHHHHHhc----cC
Confidence 45889999999999999884 36666665321 111111 1 233578999999999999999875 24
Q ss_pred chHHHHHHHHHHHHHHHhCCCCCC--CHHHHHHHHHHHHHHHcCCCC
Q 003827 704 STDAKRAVDLLYDTALISSGFTPD--SPADLGNKIYEMMAMALGGRW 748 (793)
Q Consensus 704 d~~~~~l~~lLyd~ALL~sG~~le--Dp~~fa~ri~~LL~~~L~~~~ 748 (793)
.+.+++++++||+||||++|++++ +|+.|++++++||.++|+.++
T Consensus 551 ~~~~~~~~~~Lyd~AlL~~g~~l~~~e~~~~~~~~~~l~~~~l~~~~ 597 (601)
T PRK14083 551 PKLLSRAVEALYVQALLLGHRPLRPAEMALLNRSLLGLLELALDADI 597 (601)
T ss_pred hHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 567999999999999999999997 999999999999999998433
No 8
>PF00183 HSP90: Hsp90 protein; InterPro: IPR001404 Molecular chaperones, or heat shock proteins (Hsps) are ubiquitous proteins that act to maintain proper protein folding within the cell []. They assist in the folding of nascent polypeptide chains, and are also involved in the re-folding of denatured proteins following proteotoxic stress. As their name implies, the heat shock proteins were first identified as proteins that were up-regulated under conditions of elevated temperature. However, subsequent studies have shown that increased Hsp expression is induced by a variety of cellular stresses, including oxidative stress and inflammation. Five major Hsp families have been determined, and are categorized according to their molecular size (Hsp100, Hsp90, Hsp70, Hsp60, and the small Hsps). Hsps are involved in a variety of cellular processes that are ATP-dependent. These include: prevention of protein aggregation, protein degradation, protein trafficking, and maintenance of signalling proteins in a conformation that permits activation. Hsp90 chaperones are unique in their ability to regulate a specific subset of cellular signalling proteins that have been implicated in disease processes, including intracellular protein kinases, steroid hormone receptors, and growth factor receptors [].; GO: 0005524 ATP binding, 0051082 unfolded protein binding, 0006457 protein folding, 0006950 response to stress; PDB: 3K99_D 2H55_A 3RLP_A 1OSF_A 3R4M_A 1YES_A 1UY9_A 3FT8_A 2YE2_A 2QF6_A ....
Probab=100.00 E-value=1.4e-130 Score=1124.05 Aligned_cols=478 Identities=51% Similarity=0.885 Sum_probs=417.7
Q ss_pred cCCchhhHHHHHHhhcCCCccCeEecccccccccccccCCC---C----CC----C--CCcc-----c--cccccccccc
Q 003827 268 EFSEPTRIQGLVKNYSQFVSFPIYTWQEKSRTIEVEEEEKP---E----EG----E--EQPE-----G--EKKTKKTTKT 327 (793)
Q Consensus 268 e~~~~~~i~~li~~ys~fi~~pI~l~~~~~~~~~~~~~~~~---~----~~----~--~~~~-----~--~~~~~~~~~~ 327 (793)
+|+++++|++||++||+||+|||+++.++++++++++++++ + ++ + ..++ + ++++++++++
T Consensus 1 eyl~~~klk~lvkkyS~Fi~~PI~l~~~k~~~~ev~~ee~~~~~~~~~~~~~~~~~~~~~e~~~~eee~~~~~~k~k~~~ 80 (531)
T PF00183_consen 1 EYLEEYKLKELVKKYSQFISFPIYLWVEKEEEKEVPDEEEEEEEEEKEEEEKKEEEEEKVEEEDEEEEKEEKKPKTKKVK 80 (531)
T ss_dssp GGGSHHHHHHHHHHHHTTSSSEEEEEEEEEEECCCEHHHHHH---HTT-TT--------SSEEEE----S-TTEEEEECC
T ss_pred CcccHHHHHHHHHhhccccccceeEeeeccccccCCcchhhhhhhhhhhccccccccccccccccccccccccccccccc
Confidence 68999999999999999999999999999888777754411 0 00 0 0111 1 2356778889
Q ss_pred ccccceeeecCCCcccccCCCCCCHHHHHHHHHHHhcccCCCcceeeecccceeEEEEEEEeeCCCCCCccccccccccc
Q 003827 328 EKYWDWELANETKPIWMRNPKEIEKDEYHEFYKKTFNEFLDPLAYTHFTTEGEVEFRSVLYIPGMGPLNNEEIMNPKTKN 407 (793)
Q Consensus 328 ~~~~~~~~~N~~~~iW~r~~~~v~~eey~~fyk~~~~~~~~pl~~~h~~~eg~~~~~~ll~iP~~~p~~~~~~~~~~~~~ 407 (793)
+++++|+++|+++|||+|+|++||+++|.+||++++++|++||+|+||++||+++|+||||||+.+|+++|+ .....++
T Consensus 81 ~~~~~~~~vN~~~piW~r~~~eit~eey~~Fyk~l~~~~~~Pl~~iH~~~eg~~~~~~lLyiP~~~p~~~~~-~~~~~~~ 159 (531)
T PF00183_consen 81 ETVWEWEQVNTQKPIWTRDPKEITDEEYKEFYKSLSKDYDDPLFWIHFNAEGPFEFKSLLYIPKRAPFDLFE-NDKKKNG 159 (531)
T ss_dssp EEEEEEEECS--S-GGGSSGGGS-HHHHHHHHHHHHTTSS-ESEEEEEEEESSSEEEEEEEEESS-SCCCCS-SSTT--S
T ss_pred cceeecccccccCcccccchhccchHHHHHHHHHhhhcccCchhheeccccccceeeEEEEeCCCCchhhhh-hhhcccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999986 3356789
Q ss_pred eEEEeeeeeeccCCCCCCCcccccccceeecCCCCCCcccHHhhhccHHHHHHHHHHHHHHHHHHHhhhhccCHHHHHHH
Q 003827 408 IRLYVKRVFISDDFDGELFPRYLSFVKGVVDSDDLPLNVSREILQESRIVRIMRKRLVRKTFDMIQDISQSENKEDYKKF 487 (793)
Q Consensus 408 i~LYv~rVfI~D~~~~~LlP~wl~FvrGVVDS~DLpLNvSRE~LQ~~~~l~~Irk~l~~k~l~~l~~la~~~d~e~y~kf 487 (793)
|+||||||||+|+|+ +|||+||+||||||||+|||||||||+||+|++|++||+.|++|++++|.+|+ +|+++|.+|
T Consensus 160 ikLY~rrVfI~d~~~-~llP~~L~FvkGVVDS~DLPLNVSRE~LQ~~~~lk~I~~~l~kkvl~~l~~l~--~d~e~y~~f 236 (531)
T PF00183_consen 160 IKLYVRRVFITDNFE-ELLPEYLRFVKGVVDSDDLPLNVSRETLQQNKLLKKIRKKLVKKVLDMLKKLA--KDREKYEKF 236 (531)
T ss_dssp EEEEETTEEEESSCG-GSS-GGGTT-EEEEEESSS-SSCTHHHHHTHHHHHHHHHHHHHHHHHHHHHHH--TSHHHHHHH
T ss_pred ceeeeecccccchhh-cccchhhheeeeeeeccccCCccchhhhhccHHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHH
Confidence 999999999999999 99999999999999999999999999999999999999999999999999999 689999999
Q ss_pred HHHHhHHhheecccCcccHHhhcCccceeeccCCCcccCHHHHHHhcccCCCeEEEEecCCHHHHhhChhHHHHHhcCce
Q 003827 488 WENFGRFLKLGCVEDSGNHKRLAPLLRFYTSKSEEELISLDEYVENMGEKQNAIYYLATDSLKSAKSAPFLEKLVQKDIE 567 (793)
Q Consensus 488 ~~~fg~~lK~G~~eD~~~~~~l~~LLrF~Ts~~~~~~~SL~eYv~rmke~Qk~IYY~~~~s~~~~~~Sp~lE~~~~kG~e 567 (793)
|++||.+||+||++|..||++|++||||+||+++++++||++|++||+++|+.|||++|+|++++++|||+|+|++||||
T Consensus 237 ~~~~g~~iK~G~~eD~~n~~kl~~LLrf~ss~~~~~~~SL~eYv~rmke~Qk~IYY~~g~s~~~~~~SP~lE~~k~kG~E 316 (531)
T PF00183_consen 237 WKEFGKFIKEGVIEDFKNREKLAKLLRFESSKSEGKLTSLDEYVERMKEGQKQIYYLTGESREEAEQSPYLEAFKKKGYE 316 (531)
T ss_dssp HHHHHHHHHHHHHH-GGGHHHHHTT-EEEETTTTTSEEEHHHHHHTS-TT-SEEEEEESSSHHHHHTSGGGHHHHHCT--
T ss_pred HHHHhHHHHhHHhhhhhhhhhcccceeeeccccccccccHHHhhhccccccccceEEecchHHHHhhccchhhHHhhCce
Confidence 99999999999999999999999999999999888999999999999999999999999999999999999999999999
Q ss_pred EEecCCCchHHHHHHHhhccCcceeeccccccCCCCchhHhh--HhhHHHHHHHHHHHHHHhccceeEEEEeecCCCCCe
Q 003827 568 VLYLIEPIDEVAIQNLQTFNEKKFVDISKEDLELGDEDEVKE--RETKQEFNLLCDWIKQQLGDKVAKVQVSKRLSSSPC 645 (793)
Q Consensus 568 VL~l~dpiDE~~l~~L~e~~gkkf~~V~k~~l~l~~~~e~~~--e~~~~e~~~L~~~lk~~L~~kV~~V~vS~RL~~sP~ 645 (793)
||||+||||++||++|++|+|++|++|++++++|++.++++. ++.+++|++||+|+|++||++|.+|++|.||++|||
T Consensus 317 VL~l~dpIDe~~i~~L~e~~gkkf~~I~ke~l~l~~~e~ek~~~e~~~~~~~~L~~~~k~~L~~kV~~V~vS~RL~~sPa 396 (531)
T PF00183_consen 317 VLFLTDPIDEFVIQQLEEYEGKKFQSIDKEDLDLEEDEEEKKEDEELKEEFKPLTEWLKELLGDKVEKVKVSNRLVDSPA 396 (531)
T ss_dssp EEEE-SHHHHHHHHHHSEETTEEEEETTBSSSSSSTSHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSEEEE-SSSSSSSE
T ss_pred EEEeCCchHHHHHHHHhhccccccccccccccccccchhhhhhhhhhhhHHHHHHHHHHhhhhhhhheecccccccCCcc
Confidence 999999999999999999999999999999999887665533 566789999999999999999999999999999999
Q ss_pred EEEeCCCCccHHHHHHHHHHhcCCCCcccccccceeEEeCCCChHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHhCCCC
Q 003827 646 VLVSGKFGWSANMERLMKAQALGDTSSLEFMRGRRILEINPDHPIVKDLNAACKNAPDSTDAKRAVDLLYDTALISSGFT 725 (793)
Q Consensus 646 ~lv~~e~g~s~~Merimkaq~~~d~~~~~~~~~kk~LEINp~HpLIk~L~~~~~~~~~d~~~~~l~~lLyd~ALL~sG~~ 725 (793)
|||++++|||++|+|||+||+++++.+..+|.++++|||||+||||++|+.++..+++++.++++|+||||+|||++||+
T Consensus 397 ~lv~~e~g~s~~Merimkaqa~~~~~~~~~~~~kkiLEINp~HPLIk~L~~~~~~d~~d~~~~~la~~LyD~AlL~~G~~ 476 (531)
T PF00183_consen 397 VLVSSEYGWSANMERIMKAQAMADMSMQEYMPSKKILEINPNHPLIKKLLKLVEKDEDDELAKDLAEQLYDTALLASGFE 476 (531)
T ss_dssp EEEE-SSSB-HHHHHHHHHHHCCSTTTSSTSC--EEEEE-TTSHHHHHHHHHHHCCTTHHHHHHHHHHHHHHHHHHTTSS
T ss_pred eeecccchhHHHHHHHhhhhccccccccccccccceeecCCCCHHHHHHHhhhcccchhhHHHHHHHHHhhhhhhhcCCC
Confidence 99999999999999999999988776667788999999999999999999999888888899999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCCCCC
Q 003827 726 PDSPADLGNKIYEMMAMALGGRWGRS 751 (793)
Q Consensus 726 leDp~~fa~ri~~LL~~~L~~~~~~~ 751 (793)
++||+.|++|+++||.++|+ ++.+
T Consensus 477 l~dp~~F~~Ri~~lL~~~l~--~~~~ 500 (531)
T PF00183_consen 477 LEDPAAFAKRINKLLEKSLG--VDPD 500 (531)
T ss_dssp -SSHHHHHHHHHHHHHHTTC----ST
T ss_pred cccHHHHHHHHHHHHHHhcC--CCcC
Confidence 99999999999999999999 7655
No 9
>COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair]
Probab=99.83 E-value=2.9e-20 Score=218.75 Aligned_cols=263 Identities=21% Similarity=0.262 Sum_probs=191.1
Q ss_pred HHHHHHHHHHccCCC-----chHHHHHhHhhHhhHHHhhhhhhccCCCCCCCCCCceEEEEECCCC-cEEEEEeCCCCCC
Q 003827 89 VSRLMDLIVHSLYSH-----KEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPEN-GTITITDTGIGMT 162 (793)
Q Consensus 89 ~~~Ll~ll~~~LYs~-----~~vflRELIsNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~-~~l~I~DnGiGMt 162 (793)
|+.|-+.++|+|.++ |..+|||||.||+|| +..+|+|.++.++ +.|+|+|||+||+
T Consensus 4 Ir~L~~~l~nqIAAGEVIerPaSVVKELVENSlDA------------------GAt~I~I~ve~gG~~~I~V~DNG~Gi~ 65 (638)
T COG0323 4 IRQLPPDLVNQIAAGEVIERPASVVKELVENSLDA------------------GATRIDIEVEGGGLKLIRVRDNGSGID 65 (638)
T ss_pred ceeCCHHHHHHhcccceeecHHHHHHHHHhccccc------------------CCCEEEEEEccCCccEEEEEECCCCCC
Confidence 667778888888887 899999999999999 4568999998876 5599999999999
Q ss_pred HHHHHHHHhhhcccCchhHHHHhhhcccCCCC---CccccccccccceecccccEEEEEEecCCCCCeEEEEEccCCce-
Q 003827 163 KEELVDCLGTIAQSGTSKFLKALKENNDLGAD---NGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADSSS- 238 (793)
Q Consensus 163 ~eeL~~~L~tIa~Sgt~~f~~~l~~~~~~~~d---~~~IGqFGIGf~S~F~VadkV~V~Tr~~~~~~~~~w~s~~~~~~- 238 (793)
++||.-++.++|+| ||.. ..| ..-.|-.|-.++|+..| .+++|+||..+...++.|...|+..-
T Consensus 66 ~~Dl~la~~rHaTS-------KI~~----~~DL~~I~TlGFRGEAL~SIasV-srlti~Srt~~~~~~~~~~~~g~~~~~ 133 (638)
T COG0323 66 KEDLPLALLRHATS-------KIAS----LEDLFRIRTLGFRGEALASIASV-SRLTITSRTAEASEGTQIYAEGGGMEV 133 (638)
T ss_pred HHHHHHHHhhhccc-------cCCc----hhHHHHhhccCccHHHHHHHHhh-heeEEEeecCCcCceEEEEecCCcccc
Confidence 99999999999999 3432 123 34678888899999999 89999999777678888888876543
Q ss_pred EEEEccCCCCCCCCCCeEEEEE------------ecCCCcccCCchhhHHHHHHhhcCCCccCeEecccccccccccccC
Q 003827 239 YVIREETDPEKLLKRGTQITLY------------LKEDDKYEFSEPTRIQGLVKNYSQFVSFPIYTWQEKSRTIEVEEEE 306 (793)
Q Consensus 239 ~i~~~~~~~~~~~~~GT~I~L~------------Lk~d~~~e~~~~~~i~~li~~ys~fi~~pI~l~~~~~~~~~~~~~~ 306 (793)
.+.+. ..+.||+|++. ||...+ || .+|..+|++|+- ..+.|.+.
T Consensus 134 ~~~p~------a~~~GTtVeV~dLF~NtPaRrKflks~~~-E~---~~i~~vv~r~AL-ahp~I~F~------------- 189 (638)
T COG0323 134 TVKPA------AHPVGTTVEVRDLFYNTPARRKFLKSEKT-EF---GHITELINRYAL-AHPDISFS------------- 189 (638)
T ss_pred cccCC------CCCCCCEEEehHhhccChHHHHhhcccHH-HH---HHHHHHHHHHHh-cCCCeEEE-------------
Confidence 34433 35679999987 555555 44 689999999996 44455542
Q ss_pred CCCCCCCCcccccccccccccccccceeeecCCC---cccccCCCCCCHHHHHHHHHHHhc-ccCCCcceeeecccceeE
Q 003827 307 KPEEGEEQPEGEKKTKKTTKTEKYWDWELANETK---PIWMRNPKEIEKDEYHEFYKKTFN-EFLDPLAYTHFTTEGEVE 382 (793)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~---~iW~r~~~~v~~eey~~fyk~~~~-~~~~pl~~~h~~~eg~~~ 382 (793)
+.++++ .+-..+.. ....+..+.+++ .+...+..++...+| +.
T Consensus 190 ----------------------------l~~~gk~~~~~~~~~~~----~~~~~ri~~i~G~~~~~~~l~i~~~~~~-~~ 236 (638)
T COG0323 190 ----------------------------LSHNGKLRIELLKLPGT----GDLEERIAAVYGTEFLKNALPIENEHED-LR 236 (638)
T ss_pred ----------------------------EEECCceeeEEEecCCC----CcHHHHHHHHhCHHHHHhhcccccCCCc-eE
Confidence 223333 11111111 112225556654 455555567777665 88
Q ss_pred EEEEEEeeCCCCCCccccccccccceEEEeeeeeeccCC---------CCCCCccc---ccccceeecCCCCCCccc
Q 003827 383 FRSVLYIPGMGPLNNEEIMNPKTKNIRLYVKRVFISDDF---------DGELFPRY---LSFVKGVVDSDDLPLNVS 447 (793)
Q Consensus 383 ~~~ll~iP~~~p~~~~~~~~~~~~~i~LYv~rVfI~D~~---------~~~LlP~w---l~FvrGVVDS~DLpLNvS 447 (793)
+.|++..|.. .+.++..+++|||+++|.|.. . +.||.- +.++.=-+|...+-.||.
T Consensus 237 l~G~v~~P~~--------~r~~~~~q~~fVNgR~V~~~~l~~Ai~~aY~-~~L~~~r~P~~vL~l~l~p~~vDVNVH 304 (638)
T COG0323 237 LSGYVSLPEF--------TRASRDYQYLFVNGRPVRDKLLNHALREAYA-DYLPRGRYPVFVLFLELDPELVDVNVH 304 (638)
T ss_pred EEEEeccccc--------ccCCccceEEEECCCEeccHHHHHHHHHHHH-hhccCCCCcEEEEEEeeChhhcccccC
Confidence 9999998953 256789999999999999985 3 667663 445555678888888885
No 10
>TIGR00585 mutl DNA mismatch repair protein MutL. All proteins in this family for which the functions are known are involved in the process of generalized mismatch repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.71 E-value=3.2e-16 Score=171.08 Aligned_cols=233 Identities=18% Similarity=0.217 Sum_probs=145.0
Q ss_pred HccCCCchHHHHHhHhhHhhHHHhhhhhhccCCCCCCCCCCceEEEEECCCC-cEEEEEeCCCCCCHHHHHHHHhhhccc
Q 003827 98 HSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPEN-GTITITDTGIGMTKEELVDCLGTIAQS 176 (793)
Q Consensus 98 ~~LYs~~~vflRELIsNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~-~~l~I~DnGiGMt~eeL~~~L~tIa~S 176 (793)
.+...++..+|+|||+||+||. ...|.|.+..++ ..|+|.|||.||+.+++...+....+|
T Consensus 17 ~~~i~~~~~~l~eLi~Na~dA~------------------a~~I~i~~~~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~ts 78 (312)
T TIGR00585 17 GEVIERPASVVKELVENSLDAG------------------ATRIDVEIEEGGLKLIEVSDNGSGIDKEDLPLACERHATS 78 (312)
T ss_pred cCchhhHHHHHHHHHHHHHHCC------------------CCEEEEEEEeCCEEEEEEEecCCCCCHHHHHHHhhCCCcC
Confidence 4566778999999999999994 124555554444 359999999999999998776666555
Q ss_pred CchhHHHHhhhcccCCCCCccccccccccceecccccEEEEEEec-CCCCCeEEEEEccCCceEEEEccCCCCCCCCCCe
Q 003827 177 GTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKS-PRSDKQYVWEAEADSSSYVIREETDPEKLLKRGT 255 (793)
Q Consensus 177 gt~~f~~~l~~~~~~~~d~~~IGqFGIGf~S~F~VadkV~V~Tr~-~~~~~~~~w~s~~~~~~~i~~~~~~~~~~~~~GT 255 (793)
-...+. .+ ......|.+|.|++|...+| +++|+||. .+++.+|.|...|+ .+.... ....++||
T Consensus 79 k~~~~~-~~-------~~~~~~G~rG~al~si~~~s-~~~i~S~~~~~~~~~~~~~~~g~---~~~~~~---~~~~~~GT 143 (312)
T TIGR00585 79 KIQSFE-DL-------ERIETLGFRGEALASISSVS-RLTITTKTSAADGLAWQALLEGG---MIEEIK---PAPRPVGT 143 (312)
T ss_pred CCCChh-Hh-------hcccccCccchHHHHHHhhC-cEEEEEeecCCCcceEEEEECCC---cCcccc---cccCCCcc
Confidence 322211 11 23457899999999999998 89999998 56567888884433 122111 12357999
Q ss_pred EEEEE-ec---CCCcccCCc-----hhhHHHHHHhhcC---CCccCeEecccccccccccccCCCCCCCCCccccccccc
Q 003827 256 QITLY-LK---EDDKYEFSE-----PTRIQGLVKNYSQ---FVSFPIYTWQEKSRTIEVEEEEKPEEGEEQPEGEKKTKK 323 (793)
Q Consensus 256 ~I~L~-Lk---~d~~~e~~~-----~~~i~~li~~ys~---fi~~pI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (793)
+|++. |- +... .+++ ...+.+++.+|+- .+.|.+..++.
T Consensus 144 tV~v~~lf~n~p~r~-~~~~~~~~~~~~i~~~l~~~al~~p~i~f~l~~~~~---------------------------- 194 (312)
T TIGR00585 144 TVEVRDLFYNLPVRR-KFLKSPKKEFRKILDLLNRYALIHPDVSFSLTHDGK---------------------------- 194 (312)
T ss_pred EEEEchhhccCchhh-hhccCcHHHHHHHHHHHHHHhhcCCCeEEEEEECCE----------------------------
Confidence 99997 10 0111 1211 2578889999984 33344443211
Q ss_pred ccccccccceeeecCCCcccccCCCCCCHHHHHH-HHHHHhc-ccCCCcceeeecccceeEEEEEEEeeCCCCCCccccc
Q 003827 324 TTKTEKYWDWELANETKPIWMRNPKEIEKDEYHE-FYKKTFN-EFLDPLAYTHFTTEGEVEFRSVLYIPGMGPLNNEEIM 401 (793)
Q Consensus 324 ~~~~~~~~~~~~~N~~~~iW~r~~~~v~~eey~~-fyk~~~~-~~~~pl~~~h~~~eg~~~~~~ll~iP~~~p~~~~~~~ 401 (793)
..++..... .....+ .+..+++ .....|..++....+.+.+.|++.-|...
T Consensus 195 ----------------~~~~~~~~~---~~~~~~~~i~~v~G~~~~~~l~~~~~~~~~~~~v~G~is~p~~~-------- 247 (312)
T TIGR00585 195 ----------------KVLQLSTKP---NQSLKERRIRSVFGTAVLSKLFPLLEWEDGDLQLEGFISEPNVT-------- 247 (312)
T ss_pred ----------------EEEEEcCCC---CCCHHHHHHHHHhChHhHhhceeeecccCCCEEEEEEEcCcccc--------
Confidence 011111111 112344 3556664 34455666654344568888977766553
Q ss_pred cccccc-eEEEeeeeeecc
Q 003827 402 NPKTKN-IRLYVKRVFISD 419 (793)
Q Consensus 402 ~~~~~~-i~LYv~rVfI~D 419 (793)
++.... +.+|||+++|..
T Consensus 248 ~~~~~~~q~ifvNgR~v~~ 266 (312)
T TIGR00585 248 RSRRSGWQFLFINGRPVEL 266 (312)
T ss_pred cCCCCcceEEEECCcEecc
Confidence 122334 899999999964
No 11
>PRK00095 mutL DNA mismatch repair protein; Reviewed
Probab=99.70 E-value=2.3e-16 Score=186.31 Aligned_cols=263 Identities=19% Similarity=0.244 Sum_probs=168.7
Q ss_pred ccCCCchHHHHHhHhhHhhHHHhhhhhhccCCCCCCCCCCceEEEEECCC-CcEEEEEeCCCCCCHHHHHHHHhhhcccC
Q 003827 99 SLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPE-NGTITITDTGIGMTKEELVDCLGTIAQSG 177 (793)
Q Consensus 99 ~LYs~~~vflRELIsNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~-~~~l~I~DnGiGMt~eeL~~~L~tIa~Sg 177 (793)
....+|..+|+|||+||+||. ...|+|.+..+ ...|+|.|||.||+.+++...+..+++|.
T Consensus 18 evI~~~~svvkElveNsiDAg------------------at~I~v~i~~~g~~~i~V~DnG~Gi~~~~~~~~~~~~~tsK 79 (617)
T PRK00095 18 EVVERPASVVKELVENALDAG------------------ATRIDIEIEEGGLKLIRVRDNGCGISKEDLALALARHATSK 79 (617)
T ss_pred CcccCHHHHHHHHHHHHHhCC------------------CCEEEEEEEeCCeEEEEEEEcCCCCCHHHHHHHhhccCCCC
Confidence 344458999999999999994 33666666443 35899999999999999999888888773
Q ss_pred chhHHHHhhhcccCCCCCccccccccccceecccccEEEEEEecCCCCCeEEEEEccCCceEEEEccCCCCCCCCCCeEE
Q 003827 178 TSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADSSSYVIREETDPEKLLKRGTQI 257 (793)
Q Consensus 178 t~~f~~~l~~~~~~~~d~~~IGqFGIGf~S~F~VadkV~V~Tr~~~~~~~~~w~s~~~~~~~i~~~~~~~~~~~~~GT~I 257 (793)
-..+ +.+ ....-.|..|.|+.|+-.|+ +++|+||..+++.+|.+...++..-.+.+. ..++||+|
T Consensus 80 i~~~-~dl-------~~~~t~GfrGeAL~sI~~vs-~l~i~s~~~~~~~~~~~~~~~G~~~~~~~~------~~~~GT~V 144 (617)
T PRK00095 80 IASL-DDL-------EAIRTLGFRGEALPSIASVS-RLTLTSRTADAAEGWQIVYEGGEIVEVKPA------AHPVGTTI 144 (617)
T ss_pred CCCh-hHh-------hccccCCcchhHHHhhhhce-EEEEEEecCCCCceEEEEecCCcCcceecc------cCCCCCEE
Confidence 2211 111 12346799999999998886 899999987766778776555422222221 24799999
Q ss_pred EEE-e---cCCCcccCC-----chhhHHHHHHhhcCCCccCeEecccccccccccccCCCCCCCCCcccccccccccccc
Q 003827 258 TLY-L---KEDDKYEFS-----EPTRIQGLVKNYSQFVSFPIYTWQEKSRTIEVEEEEKPEEGEEQPEGEKKTKKTTKTE 328 (793)
Q Consensus 258 ~L~-L---k~d~~~e~~-----~~~~i~~li~~ys~fi~~pI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (793)
++. | -+... .|+ +...|.+++++|+- +...|.+..
T Consensus 145 ~v~~LF~n~P~Rr-kflk~~~~e~~~i~~~v~~~Al-~~p~i~f~l---------------------------------- 188 (617)
T PRK00095 145 EVRDLFFNTPARR-KFLKSEKTELGHIDDVVNRLAL-AHPDVAFTL---------------------------------- 188 (617)
T ss_pred EechhhccCcHHH-HhccCcHHHHHHHHHHHHHHhh-cCCCcEEEE----------------------------------
Confidence 996 1 11111 222 22578999999985 333354422
Q ss_pred cccceeeecCCCcccccCCCCCCHHHHHHHHHHHhc-ccCCCcceeeecccceeEEEEEEEeeCCCCCCccccccccccc
Q 003827 329 KYWDWELANETKPIWMRNPKEIEKDEYHEFYKKTFN-EFLDPLAYTHFTTEGEVEFRSVLYIPGMGPLNNEEIMNPKTKN 407 (793)
Q Consensus 329 ~~~~~~~~N~~~~iW~r~~~~v~~eey~~fyk~~~~-~~~~pl~~~h~~~eg~~~~~~ll~iP~~~p~~~~~~~~~~~~~ 407 (793)
.++++.+|..++. ..+.++...+++ .+...+..+..... .+.+.|++..|... +..+..
T Consensus 189 -------~~~~~~~~~~~~~----~~~~~~i~~i~g~~~~~~l~~~~~~~~-~~~i~g~is~p~~~--------~~~~~~ 248 (617)
T PRK00095 189 -------THNGKLVLQTRGA----GQLLQRLAAILGREFAENALPIDAEHG-DLRLSGYVGLPTLS--------RANRDY 248 (617)
T ss_pred -------EECCEEEEEeCCC----CCHHHHHHHHhCHHhHhheEEEeccCC-CEEEEEEEeCcccc--------cCCCcc
Confidence 2233344554432 245666777764 33344544544433 48888988877432 334678
Q ss_pred eEEEeeeeeeccCC---------CCCCCcc--c-ccccceeecCCCCCCcc---cHHhh
Q 003827 408 IRLYVKRVFISDDF---------DGELFPR--Y-LSFVKGVVDSDDLPLNV---SREIL 451 (793)
Q Consensus 408 i~LYv~rVfI~D~~---------~~~LlP~--w-l~FvrGVVDS~DLpLNv---SRE~L 451 (793)
+.+|||+++|.+.. . .++|. | ..|+.--||...+-.|| -||..
T Consensus 249 ~~~fvN~R~v~~~~l~~ai~~~y~-~~~~~~~~P~~~l~i~~~~~~~DvNvhP~K~ev~ 306 (617)
T PRK00095 249 QYLFVNGRYVRDKLLNHAIRQAYH-DLLPRGRYPAFVLFLELDPHQVDVNVHPAKHEVR 306 (617)
T ss_pred eEEEECCcEecCHHHHHHHHHHHH-HhccCCCCcEEEEEEEeChHhcccccCCCcCEEE
Confidence 99999999998742 3 45553 2 33455556777777888 45544
No 12
>PF13589 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PDB: 3IED_A 2XCM_B 2JKI_B 3OPD_A 2O1V_B 2GQP_A 2O1W_C 1YT2_A 1TC6_A 2H8M_B ....
Probab=99.64 E-value=3.9e-16 Score=150.55 Aligned_cols=104 Identities=33% Similarity=0.480 Sum_probs=78.6
Q ss_pred CCCchHHHHHhHhhHhhHHHhhhhhhccCCCCCCCCCCceEEEEEC-CCCcEEEEEeCCCCCCHHHHHHHHhhhcccCch
Q 003827 101 YSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPD-PENGTITITDTGIGMTKEELVDCLGTIAQSGTS 179 (793)
Q Consensus 101 Ys~~~vflRELIsNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d-~~~~~l~I~DnGiGMt~eeL~~~L~tIa~Sgt~ 179 (793)
|+. ..+|+|||+||+||+.. .+.|.|..+ .+...|.|.|||.||+.++|.. +++++.|.+.
T Consensus 1 y~~-~~al~ElI~Ns~DA~a~----------------~I~I~i~~~~~~~~~i~I~DnG~Gm~~~~l~~-~~~~g~s~k~ 62 (137)
T PF13589_consen 1 YSP-EDALRELIDNSIDAGAT----------------NIKISIDEDKKGERYIVIEDNGEGMSREDLES-FFRIGRSSKK 62 (137)
T ss_dssp -SC-THHHHHHHHHHHHHHHH----------------HEEEEEEEETTTTTEEEEEESSS---HHHHHH-HTTCHHTHHH
T ss_pred CcH-HHHHHHHHHHHHHccCC----------------EEEEEEEcCCCCCcEEEEEECCcCCCHHHHHH-hccccCCCCC
Confidence 566 88999999999999853 245555554 3468999999999999999998 7788888543
Q ss_pred hHHHHhhhcccCCCCCccccccccc-cceecccccEEEEEEecCCCCCeEEEEEc
Q 003827 180 KFLKALKENNDLGADNGLIGQFGVG-FYSAFLVAQKVVVSTKSPRSDKQYVWEAE 233 (793)
Q Consensus 180 ~f~~~l~~~~~~~~d~~~IGqFGIG-f~S~F~VadkV~V~Tr~~~~~~~~~w~s~ 233 (793)
.. .+...+|+||+| ++|+|+++++++|+|+..+....+.|...
T Consensus 63 ~~-----------~~~~~~G~~G~G~k~A~~~~~~~~~v~S~~~~~~~~~~~~~~ 106 (137)
T PF13589_consen 63 SE-----------KDRQSIGRFGIGLKLAIFSLGDRVEVISKTNGESFTYTIDYD 106 (137)
T ss_dssp HH-----------HHGGGGGGGTSGCGGGGGGTEEEEEEEEESTTSSSEEEEEEE
T ss_pred ch-----------hhhhcCCCcceEHHHHHHHhcCEEEEEEEECCCCcEEEEEEe
Confidence 11 123579999999 88999999999999999886666666543
No 13
>COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair]
Probab=99.38 E-value=1.3e-12 Score=143.89 Aligned_cols=153 Identities=22% Similarity=0.322 Sum_probs=104.3
Q ss_pred hHHHHHhHhhHhhHHHhhhhhhccCCCCCCCCCCceEEEEE-CCCCcEEEEEeCCCCCCHHHHHHHHhhhcccCchhHHH
Q 003827 105 EVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKP-DPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLK 183 (793)
Q Consensus 105 ~vflRELIsNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~-d~~~~~l~I~DnGiGMt~eeL~~~L~tIa~Sgt~~f~~ 183 (793)
...++|||.||.|||+....+ +.+.|+|.- +++-.+++|+|||+|++.+.+.+.||++..|++ |..
T Consensus 38 ~~tv~ElV~NSLDA~eeaGIL-----------PdI~v~I~~~~~d~y~v~veDNGpGIP~e~IPkvFGk~LygSK--fh~ 104 (538)
T COG1389 38 TTTVHELVTNSLDACEEAGIL-----------PDIKVEIERIGKDHYKVIVEDNGPGIPEEQIPKVFGKMLYGSK--FHR 104 (538)
T ss_pred HHHHHHHHhcchhhHHhcCCC-----------CceEEEEEecCCceEEEEEecCCCCCChhHhHHHHHHHhccch--hhh
Confidence 458899999999999865433 556666654 355678999999999999999999999988742 322
Q ss_pred HhhhcccCCCCCccccccccccceeccc-----ccEEEEEEecCCCCCeEEEEEccC---CceEEEEccCCCCCCCCCCe
Q 003827 184 ALKENNDLGADNGLIGQFGVGFYSAFLV-----AQKVVVSTKSPRSDKQYVWEAEAD---SSSYVIREETDPEKLLKRGT 255 (793)
Q Consensus 184 ~l~~~~~~~~d~~~IGqFGIGf~S~F~V-----adkV~V~Tr~~~~~~~~~w~s~~~---~~~~i~~~~~~~~~~~~~GT 255 (793)
..+.-||+|||.-+|.+. +..|.|+|+..++...+..+..-+ +.-.|......+.....|||
T Consensus 105 ----------~~QsRGqqGiGis~avLysQmTtGkPv~V~s~T~~s~~~~~~~l~id~~kNEp~Iv~r~~~~~~~~~hGT 174 (538)
T COG1389 105 ----------NIQSRGQQGIGISAAVLYSQMTTGKPVRVISSTGDSGTAYEYELKIDVQKNEPEIVERGEVENPGGWHGT 174 (538)
T ss_pred ----------hhhccccccccHHHHHHHHHhcCCCceEEEecCCCCcceEEEEEEecCCCCcchhhhcccccCCCCCCce
Confidence 234569999998777665 588999999887666665554332 11112111001223457999
Q ss_pred EEEEEecCCCcccCCchhh-HHHHHHhhc
Q 003827 256 QITLYLKEDDKYEFSEPTR-IQGLVKNYS 283 (793)
Q Consensus 256 ~I~L~Lk~d~~~e~~~~~~-i~~li~~ys 283 (793)
+|+|+++..+. . ...+ +.+.+++-+
T Consensus 175 ~Vel~~~~~~~-~--~~~qgi~eYlkrta 200 (538)
T COG1389 175 RVELELKGVWY-R--AKRQGIYEYLKRTA 200 (538)
T ss_pred EEEEEecccch-h--hcccCHHHHHHHHh
Confidence 99999998764 1 1223 555555544
No 14
>PRK04184 DNA topoisomerase VI subunit B; Validated
Probab=99.11 E-value=5.9e-10 Score=128.61 Aligned_cols=153 Identities=27% Similarity=0.351 Sum_probs=98.6
Q ss_pred hHHHHHhHhhHhhHHHhhhhhhccCCCCCCCCCCceEEEEEC---CCCcEEEEEeCCCCCCHHHHHHHHhhhcccCchhH
Q 003827 105 EVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPD---PENGTITITDTGIGMTKEELVDCLGTIAQSGTSKF 181 (793)
Q Consensus 105 ~vflRELIsNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d---~~~~~l~I~DnGiGMt~eeL~~~L~tIa~Sgt~~f 181 (793)
..+|+|||+||+||++.... .+.+.|.+... .+...|+|.|||+||+.+++...|+.+..+++ |
T Consensus 38 ~qVLkNLIeNAIDa~~~~gi-----------lp~I~I~I~~~~~~~~~~~I~V~DNG~GIp~e~l~~iF~~f~~~SK--~ 104 (535)
T PRK04184 38 YTTVKELVDNSLDACEEAGI-----------LPDIKIEIKRVDEGKDHYRVTVEDNGPGIPPEEIPKVFGKLLYGSK--F 104 (535)
T ss_pred HHHHHHHHHHHHHHhhhcCC-----------CceEEEEEEEccCCCcEEEEEEEcCCCCCCHHHHHHHhhhhhcccc--c
Confidence 45789999999999853110 12345555432 22367999999999999999998887644321 1
Q ss_pred HHHhhhcccCCCCCccccccccccceeccccc-----EEEEEEecCCCCCeEEEEEccC--C-ceEEEEccCCCCCCCCC
Q 003827 182 LKALKENNDLGADNGLIGQFGVGFYSAFLVAQ-----KVVVSTKSPRSDKQYVWEAEAD--S-SSYVIREETDPEKLLKR 253 (793)
Q Consensus 182 ~~~l~~~~~~~~d~~~IGqFGIGf~S~F~Vad-----kV~V~Tr~~~~~~~~~w~s~~~--~-~~~i~~~~~~~~~~~~~ 253 (793)
. ......|++|+|+.+|.+++. .+.|.|+..++..++.+...-+ . .-.+..... ......+
T Consensus 105 ----~------~~~~s~G~~GLGLsiv~~isq~~~G~~I~V~S~~~~g~~~~~~~l~id~~kn~g~i~~~~~-~~~~~~~ 173 (535)
T PRK04184 105 ----H------NLRQSRGQQGIGISAAVLYAQMTTGKPVRVISSTGGSKKAYYFELKIDTKKNEPIILEREE-VDWDRWH 173 (535)
T ss_pred ----c------ccccCCCCCCcchHHHHHHHHHhcCCcEEEEEecCCCceEEEEEEEecccccCCeeccccc-cCCCCCC
Confidence 1 012356999999999988864 5899998765443555544211 0 011111100 0123579
Q ss_pred CeEEEEEecCCCcccCCchhhHHHHHHhhcC
Q 003827 254 GTQITLYLKEDDKYEFSEPTRIQGLVKNYSQ 284 (793)
Q Consensus 254 GT~I~L~Lk~d~~~e~~~~~~i~~li~~ys~ 284 (793)
||+|.+.++..+. . ...+|.++|++++-
T Consensus 174 GT~V~V~l~~~~~-~--~~~~I~e~i~r~Al 201 (535)
T PRK04184 174 GTRVELEIEGDWY-R--AKQRIYEYLKRTAI 201 (535)
T ss_pred CEEEEEEECCcCh-h--hHHHHHHHHHHHHH
Confidence 9999999987654 2 25789999999885
No 15
>KOG1979 consensus DNA mismatch repair protein - MLH1 family [Replication, recombination and repair]
Probab=99.08 E-value=6.6e-10 Score=125.31 Aligned_cols=162 Identities=25% Similarity=0.294 Sum_probs=111.6
Q ss_pred hHHHHHHHHHHccCCC-----chHHHHHhHhhHhhHHHhhhhhhccCCCCCCCCCCceEEEEECCCC-cEEEEEeCCCCC
Q 003827 88 EVSRLMDLIVHSLYSH-----KEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPEN-GTITITDTGIGM 161 (793)
Q Consensus 88 e~~~Ll~ll~~~LYs~-----~~vflRELIsNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~-~~l~I~DnGiGM 161 (793)
.|++|-+.++|.+.++ |.-+|+|||.|+.|| +...|.|.+..++ +.|.|.|||.|+
T Consensus 7 ~IrrLde~VVNRIAAGEVI~RP~NAlKEliENSLDA------------------~ST~I~V~vk~GGLKLlQisDnG~GI 68 (694)
T KOG1979|consen 7 KIRRLDEDVVNRIAAGEVIQRPVNALKELIENSLDA------------------NSTSIDVLVKDGGLKLLQISDNGSGI 68 (694)
T ss_pred hhhcCcHHHHhHhhccchhhchHHHHHHHHhccccC------------------CCceEEEEEecCCeEEEEEecCCCcc
Confidence 4677777788887776 788999999999999 4568998886665 778999999999
Q ss_pred CHHHHHHHHhhhcccCchhHHHHhhhcccCCCCCccccccccccceecccccEEEEEEecCCCCCeEEEEEccCCceEEE
Q 003827 162 TKEELVDCLGTIAQSGTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADSSSYVI 241 (793)
Q Consensus 162 t~eeL~~~L~tIa~Sgt~~f~~~l~~~~~~~~d~~~IGqFGIGf~S~F~VadkV~V~Tr~~~~~~~~~w~s~~~~~~~i~ 241 (793)
-++||.-.-.+..+|--.+|- .+. -.+-.|-.|..+-|+--| .+|+|+|+..++..+|.- +..+|.-.-.
T Consensus 69 ~reDl~ilCeRftTSKL~kFE-DL~-------~lsTyGFRGEALASiShV-A~VtV~TK~~~~~cayra-sY~DGkm~~~ 138 (694)
T KOG1979|consen 69 RREDLPILCERFTTSKLTKFE-DLF-------SLSTYGFRGEALASISHV-AHVTVTTKTAEGKCAYRA-SYRDGKMIAT 138 (694)
T ss_pred chhhhHHHHHHhhhhhcchhH-HHH-------hhhhcCccHHHHhhhhhe-eEEEEEEeecCceeeeEE-EeeccccccC
Confidence 999998655566666322231 111 123455566666666556 799999998875556643 3344443211
Q ss_pred EccCCCCCCCCCCeEEEEE------------ecCCCcccCCchhhHHHHHHhhcCC
Q 003827 242 REETDPEKLLKRGTQITLY------------LKEDDKYEFSEPTRIQGLVKNYSQF 285 (793)
Q Consensus 242 ~~~~~~~~~~~~GT~I~L~------------Lk~d~~~e~~~~~~i~~li~~ys~f 285 (793)
+.+ -....||.|++. |+.... || .+|-.++.+|+-+
T Consensus 139 pKp----cAgk~GT~I~vedLFYN~~~Rrkal~~~~E-E~---~ki~dlv~ryAIH 186 (694)
T KOG1979|consen 139 PKP----CAGKQGTIITVEDLFYNMPTRRKALRNHAE-EY---RKIMDLVGRYAIH 186 (694)
T ss_pred CCC----ccCCCceEEEehHhhccCHHHHHHhcCcHH-HH---HHHHHHHHHHhee
Confidence 211 245799999986 444443 44 5889999999953
No 16
>TIGR01052 top6b DNA topoisomerase VI, B subunit. This model describes DNA topoisomerase VI, an archaeal type II DNA topoisomerase (DNA gyrase).
Probab=99.01 E-value=2.1e-09 Score=122.96 Aligned_cols=148 Identities=20% Similarity=0.213 Sum_probs=96.1
Q ss_pred HHHHHhHhhHhhHHHhhhhhhccCCCCCCCCCCceEEEEECC--C-CcEEEEEeCCCCCCHHHHHHHHhhhcccCchhHH
Q 003827 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDP--E-NGTITITDTGIGMTKEELVDCLGTIAQSGTSKFL 182 (793)
Q Consensus 106 vflRELIsNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~--~-~~~l~I~DnGiGMt~eeL~~~L~tIa~Sgt~~f~ 182 (793)
.+++|||.||+||+.... ....|.|.+.. . ...|+|.|||.||+.+++...|+...++++
T Consensus 31 ~VlkELVeNAIDA~~~~g-------------~~p~I~V~i~~~g~~~~~I~V~DNG~GIp~edl~~iF~rf~~tsK---- 93 (488)
T TIGR01052 31 TVIHELVTNSLDACEEAG-------------ILPDIKVEIEKIGKDHYKVTVEDNGPGIPEEYIPKVFGKMLAGSK---- 93 (488)
T ss_pred HHHHHHHHHHHHHhhccC-------------CCceEEEEEEECCCceEEEEEEECCCCCCHHHHHhhhhhccccCc----
Confidence 578999999999985311 11244544432 2 237999999999999999998887544321
Q ss_pred HHhhhcccCCCCCccccccccccceeccccc-----EEEEEEecCCCCCeEEEEEc-----cCCce-EEEEccCCCCCCC
Q 003827 183 KALKENNDLGADNGLIGQFGVGFYSAFLVAQ-----KVVVSTKSPRSDKQYVWEAE-----ADSSS-YVIREETDPEKLL 251 (793)
Q Consensus 183 ~~l~~~~~~~~d~~~IGqFGIGf~S~F~Vad-----kV~V~Tr~~~~~~~~~w~s~-----~~~~~-~i~~~~~~~~~~~ 251 (793)
+. ......|++|+|+.++.+++. .++|.|+..+...++.++.. .+|.- ...+.. ...
T Consensus 94 --~~------~~~~s~G~~GlGLs~~~~isq~~~G~~i~V~S~~~g~~~~~~~~~~id~~~n~G~i~~~~~~~----~~~ 161 (488)
T TIGR01052 94 --FH------RIIQSRGQQGIGISGAVLYSQMTTGKPVKVISSTGGEIYVYKMKLKIDVQKNEGEIVEKGEWN----KPG 161 (488)
T ss_pred --cc------cccccCCCccEehhHHHHHHHHcCCceEEEEEecCCceEEEEEEEEecccccCCeecceeecC----CCC
Confidence 11 123455899999999999875 39999998765455555543 12211 111111 111
Q ss_pred CCCeEEEEEecCCCcccCCchhhHHHHHHhhcC
Q 003827 252 KRGTQITLYLKEDDKYEFSEPTRIQGLVKNYSQ 284 (793)
Q Consensus 252 ~~GT~I~L~Lk~d~~~e~~~~~~i~~li~~ys~ 284 (793)
.+||+|++.+..... .+ ...+|.+++++++-
T Consensus 162 ~~GT~V~v~f~~~~~-r~-~k~~i~e~l~~~Al 192 (488)
T TIGR01052 162 WRGTRIELEFKGVSY-RR-SKQGVYEYLRRTAV 192 (488)
T ss_pred CCceEEEEEECCcee-ec-cHHHHHHHHHHHHh
Confidence 379999999755433 21 24689999999885
No 17
>PRK14868 DNA topoisomerase VI subunit B; Provisional
Probab=98.96 E-value=4e-09 Score=124.31 Aligned_cols=147 Identities=21% Similarity=0.324 Sum_probs=97.3
Q ss_pred HHHHHhHhhHhhHHHhhhhhhccCCCCCCCCCCceEEEEECCC--CcEEEEEeCCCCCCHHHHHHHHhhhcccCchhHHH
Q 003827 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPE--NGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLK 183 (793)
Q Consensus 106 vflRELIsNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~--~~~l~I~DnGiGMt~eeL~~~L~tIa~Sgt~~f~~ 183 (793)
.+|+|||.||+||+.. ....+.|.|.+... ...|+|.|||+||+++++...|..++++++ |
T Consensus 49 tVLkNLIeNALDAs~~-------------~gilp~I~V~Ie~~g~~v~I~VeDNG~GIp~EdLp~IFerf~~tSK--f-- 111 (795)
T PRK14868 49 TAVKEAVDNALDATEE-------------AGILPDIYVEIEEVGDYYRLVVEDNGPGITKEQIPKVFGKLLYGSR--F-- 111 (795)
T ss_pred HHHHHHHHHHHHhCcc-------------cCCCceEEEEEEECCCEEEEEEEEcCCCCCHHHHHHHhhhhccccc--c--
Confidence 4678999999999742 01112455544333 347999999999999999999988875532 1
Q ss_pred HhhhcccCCCCCccccccccccceeccccc-----EEEEEEecCCCCCeEEEEE--ccCC-ceEE--EEccCCCCCCCCC
Q 003827 184 ALKENNDLGADNGLIGQFGVGFYSAFLVAQ-----KVVVSTKSPRSDKQYVWEA--EADS-SSYV--IREETDPEKLLKR 253 (793)
Q Consensus 184 ~l~~~~~~~~d~~~IGqFGIGf~S~F~Vad-----kV~V~Tr~~~~~~~~~w~s--~~~~-~~~i--~~~~~~~~~~~~~ 253 (793)
. .....-|+.|+|+.++.+++. .+.|.|+..+...++.|.. +++. .-.| .... .....+
T Consensus 112 --~------~~~~srG~rG~GLglai~~sqlt~GgpI~I~S~~~~~~~g~~~~L~Id~gkNep~I~~~~~~---~~~~~~ 180 (795)
T PRK14868 112 --H------AREQSRGQQGIGISAAVLYSQLTSGKPAKITSRTQGSEEAQYFELIIDTDTNEPEISVEETT---TWDRPH 180 (795)
T ss_pred --c------ccccCCCCCceehHHHHHHHHHcCCCcEEEEeCCCCCCceeEEEEEEecCCCccceecceec---ccCCCC
Confidence 1 011235899999999888864 4899999876556664543 3331 1122 1111 123579
Q ss_pred CeEEEEEecCCCcccCCchhhHHHHHHhhcC
Q 003827 254 GTQITLYLKEDDKYEFSEPTRIQGLVKNYSQ 284 (793)
Q Consensus 254 GT~I~L~Lk~d~~~e~~~~~~i~~li~~ys~ 284 (793)
||+|++.|.-.+. ...+|.++|++++-
T Consensus 181 GT~IeV~Lf~N~p----AR~kI~eyl~r~Al 207 (795)
T PRK14868 181 GTRIELEMEANMR----ARQQLHDYIKHTAV 207 (795)
T ss_pred ceEEEEEEEccCc----hhhhHHHHHHHHHh
Confidence 9999999865432 34678999998885
No 18
>PRK14867 DNA topoisomerase VI subunit B; Provisional
Probab=98.82 E-value=3.6e-08 Score=116.12 Aligned_cols=149 Identities=18% Similarity=0.230 Sum_probs=87.5
Q ss_pred HHHHHhHhhHhhHHHhhhhhhccCCCCCCCCCCceEEEEECCC-CcEEEEEeCCCCCCHHHHHHHHhhhcccCchhHHHH
Q 003827 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPE-NGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKA 184 (793)
Q Consensus 106 vflRELIsNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~-~~~l~I~DnGiGMt~eeL~~~L~tIa~Sgt~~f~~~ 184 (793)
..++|||.||+||+.... ..+.+.|++..... .-.|+|.|||.||+.+++...|+..-++ ++
T Consensus 39 ~VVkELVeNAIDA~~~~g-----------~~p~I~V~I~~~g~~~~~I~V~DNG~GIp~e~l~~iFerF~at-SK----- 101 (659)
T PRK14867 39 TIIHELVTNSLDACEEAE-----------ILPDIKVEIEKLGSDHYKVAVEDNGPGIPPEFVPKVFGKMLAG-SK----- 101 (659)
T ss_pred HHHHHHHHHHHHHhhccC-----------CCceEEEEEEECCCcEEEEEEEeeCeeCCHHHHhhhhcccccc-Cc-----
Confidence 578999999999985211 01233444433222 2359999999999999999988773222 11
Q ss_pred hhhcccCCCCCccccccccccceecccccE-----EEEEEecCCCCCeE--EEEEc---cCCceEEEEccCCCCCCCCCC
Q 003827 185 LKENNDLGADNGLIGQFGVGFYSAFLVAQK-----VVVSTKSPRSDKQY--VWEAE---ADSSSYVIREETDPEKLLKRG 254 (793)
Q Consensus 185 l~~~~~~~~d~~~IGqFGIGf~S~F~Vadk-----V~V~Tr~~~~~~~~--~w~s~---~~~~~~i~~~~~~~~~~~~~G 254 (793)
+. .-....|++|+|+.++.+++.. +.|.|+..+ +..+ .|... .+|. +.... ......+|
T Consensus 102 ~~------~~~qS~G~rG~GLa~a~~vsql~~G~pI~I~S~~g~-G~~f~i~L~i~i~~n~G~--I~~~~--~~~~~~~G 170 (659)
T PRK14867 102 MH------RLIQSRGQQGIGAAGVLLFSQITTGKPLKITTSTGD-GKIHEMEIKMSVEKNEGD--IVSHK--VREGFWRG 170 (659)
T ss_pred cc------ceeccCCCCcccHHHHHHHHHHhcCCcEEEEEEcCC-CEEEEEEEEEEecccCCe--ecccc--cCCCCCCC
Confidence 11 0123458899999888877644 578887643 3322 22221 1122 11110 01134799
Q ss_pred eEEEEEecCCCcccCCchhhHHHHHHhhcC
Q 003827 255 TQITLYLKEDDKYEFSEPTRIQGLVKNYSQ 284 (793)
Q Consensus 255 T~I~L~Lk~d~~~e~~~~~~i~~li~~ys~ 284 (793)
|+|++.+++-.. .-. +..+.+++++++-
T Consensus 171 T~Ie~~V~dLFy-nR~-E~~i~e~l~r~AL 198 (659)
T PRK14867 171 TRVEGEFKEVTY-NRR-EQGPFEYLRRISL 198 (659)
T ss_pred cEEEEEEeecee-chh-hHHHHHHHHHHHH
Confidence 999977664211 111 2348889998884
No 19
>KOG1978 consensus DNA mismatch repair protein - MLH2/PMS1/Pms2 family [Replication, recombination and repair]
Probab=98.72 E-value=5.2e-08 Score=112.76 Aligned_cols=155 Identities=22% Similarity=0.251 Sum_probs=98.3
Q ss_pred HHccCCCchHHHHHhHhhHhhHHHhhhhhhccCCCCCCCCCCceEEEEECC-CCcEEEEEeCCCCCCHHHHHHHHhhhcc
Q 003827 97 VHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDP-ENGTITITDTGIGMTKEELVDCLGTIAQ 175 (793)
Q Consensus 97 ~~~LYs~~~vflRELIsNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~-~~~~l~I~DnGiGMt~eeL~~~L~tIa~ 175 (793)
.-+...+..++|+|||.||.|| +...|+|.++. +-..|.|.|||.|++..+..-.=..+-+
T Consensus 14 S~qvI~sl~sAVKELvENSiDA------------------GAT~I~I~~kdyG~d~IEV~DNG~GI~~~n~~~l~lkh~T 75 (672)
T KOG1978|consen 14 SSQVITSLVSAVKELVENSIDA------------------GATAIDIKVKDYGSDSIEVSDNGSGISATDFEGLALKHTT 75 (672)
T ss_pred cCCeeccHHHHHHHHHhcCccc------------------CCceeeEecCCCCcceEEEecCCCCCCccchhhhhhhhhh
Confidence 3455666789999999999999 44577887754 4578999999999999888742222223
Q ss_pred cCchhHHHHhhhcccCCCCCccccccccccceecccccEEEEEEecCCCCCeEEEEEccCCceEEEEccCCCCCCCCCCe
Q 003827 176 SGTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADSSSYVIREETDPEKLLKRGT 255 (793)
Q Consensus 176 Sgt~~f~~~l~~~~~~~~d~~~IGqFGIGf~S~F~VadkV~V~Tr~~~~~~~~~w~s~~~~~~~i~~~~~~~~~~~~~GT 255 (793)
|.-..|-+- ....-.|-.|-.+-|--.+ ..|.|+|++..+..+..|.-+..|... ...+ -..++||
T Consensus 76 SKi~~f~Dl--------~~l~T~GFRGEALSsLCa~-~dv~I~Trt~~~~vgt~l~~Dh~G~I~-~k~~----~ar~~GT 141 (672)
T KOG1978|consen 76 SKIVSFADL--------AVLFTLGFRGEALSSLCAL-GDVMISTRSHSAKVGTRLVYDHDGHII-QKKP----VARGRGT 141 (672)
T ss_pred hcccchhhh--------hhhhhhhhHHHHHHhhhhc-cceEEEEeeccCccceeEEEccCCcee-eecc----ccCCCCC
Confidence 322222110 1123556677777333345 567788888766778888888766543 1111 2578999
Q ss_pred EEEEE-----ecCCCcccCCc-----hhhHHHHHHhhcC
Q 003827 256 QITLY-----LKEDDKYEFSE-----PTRIQGLVKNYSQ 284 (793)
Q Consensus 256 ~I~L~-----Lk~d~~~e~~~-----~~~i~~li~~ys~ 284 (793)
+|.+. |.-... +|-. -.++..++..|+-
T Consensus 142 TV~v~~LF~tLPVR~k-ef~r~~Kref~k~i~li~~y~l 179 (672)
T KOG1978|consen 142 TVMVRQLFSTLPVRRK-EFQRNIKRKFVKLISLIQAYAL 179 (672)
T ss_pred EEEHhhhcccCCCchH-HhhcchhhhhhhHHhhHHHHHh
Confidence 99986 111111 1111 1367778888886
No 20
>smart00433 TOP2c TopoisomeraseII. Eukaryotic DNA topoisomerase II, GyrB, ParE
Probab=98.72 E-value=1.5e-07 Score=111.49 Aligned_cols=154 Identities=18% Similarity=0.199 Sum_probs=91.4
Q ss_pred HHHHhHhhHhhHHHhhhhhhccCCCCCCCCCCceEEEEECCCCcEEEEEeCCCCCCHHHHH-------HHHhhhcccCch
Q 003827 107 FLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELV-------DCLGTIAQSGTS 179 (793)
Q Consensus 107 flRELIsNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~eeL~-------~~L~tIa~Sgt~ 179 (793)
.++|||.||+||... .....|.|.++.+ +.|+|+|||.||+.+... +.+.++...|.+
T Consensus 5 ~v~ElvdNAiD~~~~--------------g~at~I~V~i~~~-g~I~V~DnG~GIp~~~h~~~~~~~~e~v~~~lhag~k 69 (594)
T smart00433 5 LVDEIVDNAADEALA--------------GYMDTIKVTIDKD-NSISVEDNGRGIPVEIHPKEKKYAPEVIFTVLHAGGK 69 (594)
T ss_pred EEeeehhcccchhcc--------------CCCCEEEEEEeCC-CeEEEEEeCCceeCCccCcCCCCcHHHhhhhhcccCC
Confidence 578999999999621 1245777777765 499999999999953321 111122222211
Q ss_pred hHHHHhhhcccCCCCCccccccccccceecccccEEEEEEecCCCCCeEEEEEccCCceEEEEccCCCCCCCCCCeEEEE
Q 003827 180 KFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADSSSYVIREETDPEKLLKRGTQITL 259 (793)
Q Consensus 180 ~f~~~l~~~~~~~~d~~~IGqFGIGf~S~F~VadkV~V~Tr~~~~~~~~~w~s~~~~~~~i~~~~~~~~~~~~~GT~I~L 259 (793)
| . .......-|..|+|..++-.++.+++|+|+..+. .|......+|.- +.+... .+.....||+|+.
T Consensus 70 -f----d----~~~~k~s~G~~G~Gls~vnalS~~l~v~~~~~g~--~~~~~~~~~G~~-~~~~~~-~~~~~~~GT~V~F 136 (594)
T smart00433 70 -F----D----DDAYKVSGGLHGVGASVVNALSTEFEVEVARDGK--EYKQSFSNNGKP-LSEPKI-IGDTKKDGTKVTF 136 (594)
T ss_pred -C----C----CCCccccCCcccchHHHHHHhcCceEEEEEeCCc--EEEEEEeCCCeE-Ccccee-cCCCCCCCcEEEE
Confidence 1 1 1112346799999999999999999999998653 344433222221 111000 0123479999995
Q ss_pred EecCCCcccCCc-----hhhHHHHHHhhcCCCccCeEe
Q 003827 260 YLKEDDKYEFSE-----PTRIQGLVKNYSQFVSFPIYT 292 (793)
Q Consensus 260 ~Lk~d~~~e~~~-----~~~i~~li~~ys~fi~~pI~l 292 (793)
. ++.. .|.. ...|.+.++.++- +..-|.+
T Consensus 137 ~--Pd~~-~F~~~~~~~~~~i~~rl~~~A~-l~pgl~i 170 (594)
T smart00433 137 K--PDLE-IFGMTTDDDFELLKRRLRELAF-LNKGVKI 170 (594)
T ss_pred E--ECHH-HhCCcccchHHHHHHHHHHHHh-cCCCcEE
Confidence 3 4433 3322 3568888888874 3333443
No 21
>PRK05559 DNA topoisomerase IV subunit B; Reviewed
Probab=98.63 E-value=6.4e-08 Score=115.11 Aligned_cols=160 Identities=16% Similarity=0.186 Sum_probs=99.9
Q ss_pred CchHHHHHhHhhHhhHHHhhhhhhccCCCCCCCCCCceEEEEECCCCcEEEEEeCCCCCCHHHHHH--------HHhhhc
Q 003827 103 HKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVD--------CLGTIA 174 (793)
Q Consensus 103 ~~~vflRELIsNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~eeL~~--------~L~tIa 174 (793)
.+...++|||.||+|++.. .....|.|.++.+ +.|+|+|||.||+.+.+.. .|+++-
T Consensus 37 gl~~lv~EivdNaiDe~~a--------------g~a~~I~V~i~~d-g~I~V~DnGrGIP~~~~~~~~~~~~E~v~t~lh 101 (631)
T PRK05559 37 GLHHLVQEVIDNSVDEALA--------------GHGKRIEVTLHAD-GSVSVRDNGRGIPVGIHPEEGKSGVEVILTKLH 101 (631)
T ss_pred hhhhhhhhhhccccchhhc--------------CCCCEEEEEEeCC-CcEEEEEcCCCCCcccccccCCcchheeeeecc
Confidence 3567899999999999621 2345777777665 4899999999999998887 676633
Q ss_pred ccCchhHHHHhhhcccCCCCCccccccccccceecccccEEEEEEecCCCCCeEEEEEccCCc-eEEEEccCCCCCCCCC
Q 003827 175 QSGTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADSS-SYVIREETDPEKLLKR 253 (793)
Q Consensus 175 ~Sgt~~f~~~l~~~~~~~~d~~~IGqFGIGf~S~F~VadkV~V~Tr~~~~~~~~~w~s~~~~~-~~i~~~~~~~~~~~~~ 253 (793)
.+|+ | .. ......-|..|+|..++-.++.+++|.|++.+. .|..+..++.. -.+.... ......+
T Consensus 102 agsK--f----~~----~~yk~SgGl~GvGls~vNalS~~l~V~s~r~g~--~~~~~f~~G~~~~~l~~~~--~~~~~~~ 167 (631)
T PRK05559 102 AGGK--F----SN----KAYKFSGGLHGVGVSVVNALSSRLEVEVKRDGK--VYRQRFEGGDPVGPLEVVG--TAGKRKT 167 (631)
T ss_pred ccCc--c----CC----ccccccCcccccchhhhhhheeeEEEEEEeCCe--EEEEEEECCcCccCccccc--cccCCCC
Confidence 3321 2 11 112246799999999999999999999997542 24333333211 1111111 1111579
Q ss_pred CeEEEEEecCCC-cccCCchhhHHHHHHhhcCCCccCeEe
Q 003827 254 GTQITLYLKEDD-KYEFSEPTRIQGLVKNYSQFVSFPIYT 292 (793)
Q Consensus 254 GT~I~L~Lk~d~-~~e~~~~~~i~~li~~ys~fi~~pI~l 292 (793)
||+|+....... ...-.+...|.+.+++++- +..-+.+
T Consensus 168 GT~V~f~PD~~iF~~~~~~~~~i~~~l~~~A~-lnpgl~i 206 (631)
T PRK05559 168 GTRVRFWPDPKIFDSPKFSPERLKERLRSKAF-LLPGLTI 206 (631)
T ss_pred CcEEEEEECHHHcCCcccCHHHHHHHHHHHHh-hCCCeEE
Confidence 999999642110 0011345678888888874 3333443
No 22
>TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit, proteobacterial. This protein is active as an alpha(2)beta(2) heterotetramer.
Probab=98.61 E-value=7.4e-08 Score=114.30 Aligned_cols=149 Identities=16% Similarity=0.140 Sum_probs=94.6
Q ss_pred chHHHHHhHhhHhh---HHHhhhhhhccCCCCCCCCCCceEEEEECCCCcEEEEEeCCCCCCHHH--------HHHHHhh
Q 003827 104 KEVFLRELVSNASD---ALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEE--------LVDCLGT 172 (793)
Q Consensus 104 ~~vflRELIsNA~D---A~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~ee--------L~~~L~t 172 (793)
+...|+|||.||+| |. ..-+|.|.++.+ +.|+|+|||.||+.++ +.-.|+.
T Consensus 31 ~~~lv~ElvdNsiDE~~ag-----------------~a~~I~V~i~~d-~~I~V~DnGrGIp~~~h~~~g~~~~e~v~t~ 92 (625)
T TIGR01055 31 PNHLVQEVIDNSVDEALAG-----------------FASIIMVILHQD-QSIEVFDNGRGMPVDIHPKEGVSAVEVILTT 92 (625)
T ss_pred cceeehhhhhcccchhhcC-----------------CCCEEEEEEeCC-CeEEEEecCCccCcccccccCCcHHHHhhhc
Confidence 56799999999999 41 344777777665 8999999999999988 7666643
Q ss_pred hcccCchhHHHHhhhcccCCCCCccccccccccceecccccEEEEEEecCCCCCeEEEEEccCCce-EEEEccCCCCCCC
Q 003827 173 IAQSGTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADSSS-YVIREETDPEKLL 251 (793)
Q Consensus 173 Ia~Sgt~~f~~~l~~~~~~~~d~~~IGqFGIGf~S~F~VadkV~V~Tr~~~~~~~~~w~s~~~~~~-~i~~~~~~~~~~~ 251 (793)
.-.+| ++.. .......|.-|+|..++-.++.+++|.|++.+. .|.+...++... .+.... +....
T Consensus 93 lhags------K~~~----~~~~~SgG~~GvGls~vnalS~~l~v~~~r~g~--~~~~~~~~G~~~~~~~~i~--~~~~~ 158 (625)
T TIGR01055 93 LHAGG------KFSN----KNYHFSGGLHGVGISVVNALSKRVKIKVYRQGK--LYSIAFENGAKVTDLISAG--TCGKR 158 (625)
T ss_pred ccccC------CCCC----CcceecCCCcchhHHHHHHhcCeEEEEEEECCe--EEEEEEECCeEcccccccc--ccCCC
Confidence 32222 2221 112246789999999999999999999997653 254444433110 111110 11123
Q ss_pred CCCeEEEEEecCCCc-ccCCchhhHHHHHHhhcC
Q 003827 252 KRGTQITLYLKEDDK-YEFSEPTRIQGLVKNYSQ 284 (793)
Q Consensus 252 ~~GT~I~L~Lk~d~~-~e~~~~~~i~~li~~ys~ 284 (793)
.+||+|+..-...-- ..-.+..+|.+++++++-
T Consensus 159 ~~GT~V~F~PD~~~F~~~~~e~~~i~~~l~~lA~ 192 (625)
T TIGR01055 159 LTGTSVHFTPDPEIFDSLHFSVSRLYHILRAKAV 192 (625)
T ss_pred CCCeEEEEEECHHHCCCCccCHHHHHHHHHHHHh
Confidence 599999985221100 011234678888888774
No 23
>TIGR01059 gyrB DNA gyrase, B subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV. Proteins scoring above the noise cutoff for this model and below the trusted cutoff for topoisomerase IV models probably should be designated GyrB.
Probab=98.59 E-value=2.1e-06 Score=102.97 Aligned_cols=154 Identities=18% Similarity=0.182 Sum_probs=91.7
Q ss_pred hHHHHHhHhhHhhHHHhhhhhhccCCCCCCCCCCceEEEEECCCCcEEEEEeCCCCCCHHHH-------HHHHhhhcccC
Q 003827 105 EVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEEL-------VDCLGTIAQSG 177 (793)
Q Consensus 105 ~vflRELIsNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~eeL-------~~~L~tIa~Sg 177 (793)
...++|||.||+|-.. ......|.|.++.+ +.|+|+|||.||+.+-- ...+.++..+|
T Consensus 32 ~~vv~Elv~NaiDe~~--------------ag~a~~I~V~i~~~-g~I~V~DnG~GIp~~~h~~~ki~~~e~i~~~l~ag 96 (654)
T TIGR01059 32 HHLVYEVVDNSIDEAM--------------AGYCDTINVTINDD-GSVTVEDNGRGIPVDIHPEEGISAVEVVLTVLHAG 96 (654)
T ss_pred HhhhHHhhhccccccc--------------cCCCCEEEEEEeCC-CcEEEEEeCCCcCccccCcCCCCchHHheeeeccc
Confidence 4578899999999320 01244677777654 46999999999998610 01112222222
Q ss_pred chhHHHHhhhcccCCCCCccccccccccceecccccEEEEEEecCCCCCeEEEEEccCCceE-EEEccCCCCCCCCCCeE
Q 003827 178 TSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADSSSY-VIREETDPEKLLKRGTQ 256 (793)
Q Consensus 178 t~~f~~~l~~~~~~~~d~~~IGqFGIGf~S~F~VadkV~V~Tr~~~~~~~~~w~s~~~~~~~-i~~~~~~~~~~~~~GT~ 256 (793)
.+ | . ........|..|+|..|+-.++.+++|.|++.+. .|..+..++..-. +... +....+||+
T Consensus 97 ~k-f----~----~~~~k~s~G~~G~gl~~inalS~~l~v~~~~~g~--~~~~~~~~G~~~~~l~~~----~~~~~~GT~ 161 (654)
T TIGR01059 97 GK-F----D----KDSYKVSGGLHGVGVSVVNALSEWLEVTVFRDGK--IYRQEFERGIPLGPLEVV----GETKKTGTT 161 (654)
T ss_pred Cc-c----C----CCcceecCCccchhHHHHHHhcCeEEEEEEECCe--EEEEEEeCCCcccCceec----cCCCCCCcE
Confidence 21 2 1 1122346799999999999999999999997653 2443333331111 1111 124579999
Q ss_pred EEEEecCCCcccC----CchhhHHHHHHhhcCCCccCeEe
Q 003827 257 ITLYLKEDDKYEF----SEPTRIQGLVKNYSQFVSFPIYT 292 (793)
Q Consensus 257 I~L~Lk~d~~~e~----~~~~~i~~li~~ys~fi~~pI~l 292 (793)
|+..- +.. -| .+...|.+.++.++- +...|.+
T Consensus 162 V~F~p--dp~-~F~~~~~e~~~i~~rl~~~A~-l~pgl~i 197 (654)
T TIGR01059 162 VRFWP--DPE-IFETTEFDFDILAKRLRELAF-LNSGVKI 197 (654)
T ss_pred EEEEE--ChH-HhCCcccCHHHHHHHHHHhhc-cCCCeEE
Confidence 99552 222 23 245678888988884 4434444
No 24
>PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins. The fold of this domain consists of two layers, alpha/beta, which contains an 8-stranded mixed beta-sheet. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0005524 ATP binding; PDB: 3JZ3_A 3DGE_A 2C2A_A 2BU5_A 2BU8_A 2BU6_A 2BU7_A 2BU2_A 2BTZ_A 3K99_D ....
Probab=98.36 E-value=1e-06 Score=80.91 Aligned_cols=80 Identities=29% Similarity=0.480 Sum_probs=59.0
Q ss_pred HHHHHhHhhHhhHHHhhhhhhccCCCCCCCCCCceEEEEECCCCcEEEEEeCCCCCCHHHHHHHHhhhcccCchhHHHHh
Q 003827 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKAL 185 (793)
Q Consensus 106 vflRELIsNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~eeL~~~L~tIa~Sgt~~f~~~l 185 (793)
..|.||++||+++... ...+.|.+..+.+.-.|+|.|||.||+.+++...+....++.
T Consensus 8 ~il~~ll~Na~~~~~~--------------~~~I~i~~~~~~~~~~i~i~d~G~gi~~~~l~~~~~~~~~~~-------- 65 (111)
T PF02518_consen 8 QILSELLDNAIKHSPE--------------GGKIDITIEEDDDHLSIEISDNGVGIPPEELEKLFEPFFTSD-------- 65 (111)
T ss_dssp HHHHHHHHHHHHHHHH--------------TSEEEEEEEEETTEEEEEEEESSSSTTHHHHHHHCSTTSHSS--------
T ss_pred HHHHHHHHHHHHHhcC--------------CCEEEEEEEEecCeEEEEEEeccccccccccccchhhccccc--------
Confidence 5789999999999753 134555555565678899999999999999987664332221
Q ss_pred hhcccCCCCCccccccccccceecccccE
Q 003827 186 KENNDLGADNGLIGQFGVGFYSAFLVAQK 214 (793)
Q Consensus 186 ~~~~~~~~d~~~IGqFGIGf~S~F~Vadk 214 (793)
.+....+.+|+|++.|..++++
T Consensus 66 -------~~~~~~~g~GlGL~~~~~~~~~ 87 (111)
T PF02518_consen 66 -------KSETSISGHGLGLYIVKQIAER 87 (111)
T ss_dssp -------SSSGGSSSSSHHHHHHHHHHHH
T ss_pred -------ccccccCCCChHHHHHHHHHHH
Confidence 1334567799999999998765
No 25
>PRK05644 gyrB DNA gyrase subunit B; Validated
Probab=98.31 E-value=1.5e-06 Score=103.55 Aligned_cols=156 Identities=20% Similarity=0.187 Sum_probs=92.4
Q ss_pred hHHHHHhHhhHhhHHHhhhhhhccCCCCCCCCCCceEEEEECCCCcEEEEEeCCCCCCHHHHH-------HHHhhhcccC
Q 003827 105 EVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELV-------DCLGTIAQSG 177 (793)
Q Consensus 105 ~vflRELIsNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~eeL~-------~~L~tIa~Sg 177 (793)
...|+|||.||+|-.. ......|.|.++.+ +.|+|+|||.||+.+--. +.+.++..+|
T Consensus 39 ~~~v~ElvdNaiDe~~--------------ag~a~~I~V~i~~~-g~I~V~DnG~GIp~~~h~~~ki~~~e~i~~~lhag 103 (638)
T PRK05644 39 HHLVYEIVDNSIDEAL--------------AGYCDHIEVTINED-GSITVTDNGRGIPVDIHPKTGKPAVEVVLTVLHAG 103 (638)
T ss_pred HhhhHHhhhccccccc--------------CCCCCEEEEEEeCC-CcEEEEEeCccccCCccCCCCCCchHHheeeeccc
Confidence 3577899999999421 01245777777664 599999999999986111 1122222222
Q ss_pred chhHHHHhhhcccCCCCCccccccccccceecccccEEEEEEecCCCCCeEEEEEccCCceEEEEccCCCCCCCCCCeEE
Q 003827 178 TSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADSSSYVIREETDPEKLLKRGTQI 257 (793)
Q Consensus 178 t~~f~~~l~~~~~~~~d~~~IGqFGIGf~S~F~VadkV~V~Tr~~~~~~~~~w~s~~~~~~~i~~~~~~~~~~~~~GT~I 257 (793)
.+ | . ........|..|+|..++-.++.+++|+|++.+. +|.....++ .- +.+... .+.....||+|
T Consensus 104 ~k-f----d----~~~yk~s~G~~G~Gls~vnalS~~~~v~t~r~g~--~~~~~~~~G-~~-~~~~~~-~~~~~~~GT~I 169 (638)
T PRK05644 104 GK-F----G----GGGYKVSGGLHGVGVSVVNALSTWLEVEVKRDGK--IYYQEYERG-VP-VTPLEV-IGETDETGTTV 169 (638)
T ss_pred Cc-c----C----CCcccccCCccccchhhhhheeceEEEEEEeCCc--EEEEEEECC-eE-ccCccc-cCCcCCCCcEE
Confidence 21 1 1 1112236799999999999999999999997653 554444433 21 111110 11235799999
Q ss_pred EEEecCCCc---ccCCchhhHHHHHHhhcCCCccCeEe
Q 003827 258 TLYLKEDDK---YEFSEPTRIQGLVKNYSQFVSFPIYT 292 (793)
Q Consensus 258 ~L~Lk~d~~---~e~~~~~~i~~li~~ys~fi~~pI~l 292 (793)
+.. ++.. ..-++...|.+.++.++- +..-|.+
T Consensus 170 ~F~--Pd~~~F~~~~~e~~~i~~rl~~~A~-l~pgl~i 204 (638)
T PRK05644 170 TFK--PDPEIFETTEFDYDTLATRLRELAF-LNKGLKI 204 (638)
T ss_pred EEE--ECHHHcCCcccCHHHHHHHHHHHHh-hCCCcEE
Confidence 964 3322 012345678888888874 3333443
No 26
>PRK14939 gyrB DNA gyrase subunit B; Provisional
Probab=98.28 E-value=1.9e-06 Score=103.74 Aligned_cols=152 Identities=17% Similarity=0.250 Sum_probs=93.6
Q ss_pred hHHHHHhHhhHhh-HHHhhhhhhccCCCCCCCCCCceEEEEECCCCcEEEEEeCCCCCCHH----------HHHHHHhhh
Q 003827 105 EVFLRELVSNASD-ALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKE----------ELVDCLGTI 173 (793)
Q Consensus 105 ~vflRELIsNA~D-A~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~e----------eL~~~L~tI 173 (793)
...++|||.||+| |++ .....|+|.++.+ +.|+|+|||.||+.+ |+. |+ .
T Consensus 39 hhlv~EivdNaiDE~~A---------------G~a~~I~V~i~~d-gsIsV~DnGrGIPvd~h~~~g~~~~Elv--lt-~ 99 (756)
T PRK14939 39 HHMVYEVVDNAIDEALA---------------GHCDDITVTIHAD-GSVSVSDNGRGIPTDIHPEEGVSAAEVI--MT-V 99 (756)
T ss_pred hhhhhHhhccccccccc---------------CCCCEEEEEEcCC-CeEEEEEcCCcccCCcccccCCchhhhe--ee-e
Confidence 4689999999999 221 1244777777764 599999999999997 554 33 3
Q ss_pred cccCchhHHHHhhhcccCCCCCccccccccccceecccccEEEEEEecCCCCCeEEEEEccCCce-EEEEccCCCCCCCC
Q 003827 174 AQSGTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADSSS-YVIREETDPEKLLK 252 (793)
Q Consensus 174 a~Sgt~~f~~~l~~~~~~~~d~~~IGqFGIGf~S~F~VadkV~V~Tr~~~~~~~~~w~s~~~~~~-~i~~~~~~~~~~~~ 252 (793)
...|.+ +.. ....-.-|.-|+|..++-.++.+++|.|++.+. .|...-..+..- .+... +....
T Consensus 100 lhAggK-----fd~----~~ykvSgGlhGvG~svvNAlS~~l~v~v~r~gk--~~~q~f~~G~~~~~l~~~----g~~~~ 164 (756)
T PRK14939 100 LHAGGK-----FDQ----NSYKVSGGLHGVGVSVVNALSEWLELTIRRDGK--IHEQEFEHGVPVAPLKVV----GETDK 164 (756)
T ss_pred ecccCC-----CCC----CcccccCCccCccceEeehccCeEEEEEEeCCe--EEEEEEecCccccCcccc----CCcCC
Confidence 333322 211 111225688999999999999999999997552 243333332110 11111 12357
Q ss_pred CCeEEEEEecCCCcccC----CchhhHHHHHHhhcCCCc--cCeEecc
Q 003827 253 RGTQITLYLKEDDKYEF----SEPTRIQGLVKNYSQFVS--FPIYTWQ 294 (793)
Q Consensus 253 ~GT~I~L~Lk~d~~~e~----~~~~~i~~li~~ys~fi~--~pI~l~~ 294 (793)
+||+|+..- +.. -| .+...|.+.++.++ |+. .-|.+++
T Consensus 165 ~GT~V~F~P--D~~-iF~~~~~~~~~i~~rl~elA-~lnpgl~i~l~d 208 (756)
T PRK14939 165 TGTEVRFWP--SPE-IFENTEFDYDILAKRLRELA-FLNSGVRIRLKD 208 (756)
T ss_pred CCcEEEEEE--CHH-HcCCcccCHHHHHHHHHHHh-hcCCCCEEEEec
Confidence 999999853 222 12 34467888888877 344 3344443
No 27
>KOG1977 consensus DNA mismatch repair protein - MLH3 family [Replication, recombination and repair]
Probab=97.82 E-value=1e-05 Score=93.46 Aligned_cols=126 Identities=21% Similarity=0.263 Sum_probs=81.0
Q ss_pred CchHHHHHhHhhHhhHHHhhhhhhccCCCCCCCCCCceEEEEECCCCcEEEEEeCCCCCCHHHHHHHHhh-hcccCchhH
Q 003827 103 HKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGT-IAQSGTSKF 181 (793)
Q Consensus 103 ~~~vflRELIsNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~eeL~~~L~t-Ia~Sgt~~f 181 (793)
+-..+++||+.|++||. ...|.|.++-..-.+.|.|||+||+++||.. ||+ -++| +|
T Consensus 21 sla~~VeElv~NSiDA~------------------At~V~v~V~~~t~sv~ViDdG~G~~rdDl~~-lg~ry~TS---K~ 78 (1142)
T KOG1977|consen 21 SLAQCVEELVLNSIDAE------------------ATCVAVRVNMETFSVQVIDDGFGMGRDDLEK-LGNRYFTS---KC 78 (1142)
T ss_pred HHHHHHHHHHhhccccC------------------ceEEEEEecCceeEEEEEecCCCccHHHHHH-HHhhhhhh---hc
Confidence 44679999999999993 4467777777788999999999999999984 543 2232 22
Q ss_pred HHHhhhcccCCCCCccccccccccceecccccEEEEEEecCCCCCeEEEE--EccCCceEEEEccCCCCCCCCCCeEEEE
Q 003827 182 LKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWE--AEADSSSYVIREETDPEKLLKRGTQITL 259 (793)
Q Consensus 182 ~~~l~~~~~~~~d~~~IGqFGIGf~S~F~VadkV~V~Tr~~~~~~~~~w~--s~~~~~~~i~~~~~~~~~~~~~GT~I~L 259 (793)
. ... + -......|-.|-.++|+.=++ -++|.|+..+-..+|... ..|. .-..-+++ ..+...||+|++
T Consensus 79 h-~~n---d-l~~~~tyGfRGeALasIsd~s-~l~v~skkk~r~~~~~~kk~~~gs-~~~~l~iD---~~R~~sGTtVtV 148 (1142)
T KOG1977|consen 79 H-SVN---D-LENPRTYGFRGEALASISDMS-SLVVISKKKNRTMKTFVKKFQSGS-ALKALEID---VTRASSGTTVTV 148 (1142)
T ss_pred e-ecc---c-cccccccccchhhhhhhhhhh-hhhhhhhhcCCchhHHHHHHhccc-cceecccc---cccccCCcEEEe
Confidence 2 111 0 123357788888999887774 455777765544444311 1121 12222222 235689999998
Q ss_pred E
Q 003827 260 Y 260 (793)
Q Consensus 260 ~ 260 (793)
+
T Consensus 149 ~ 149 (1142)
T KOG1977|consen 149 Y 149 (1142)
T ss_pred H
Confidence 7
No 28
>smart00387 HATPase_c Histidine kinase-like ATPases. Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.
Probab=97.36 E-value=0.0008 Score=59.36 Aligned_cols=81 Identities=21% Similarity=0.333 Sum_probs=55.1
Q ss_pred HHHHHhHhhHhhHHHhhhhhhccCCCCCCCCCCceEEEEECCCCcEEEEEeCCCCCCHHHHHHHHhhhcccCchhHHHHh
Q 003827 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKAL 185 (793)
Q Consensus 106 vflRELIsNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~eeL~~~L~tIa~Sgt~~f~~~l 185 (793)
..+.||+.||.++... ...+.|.+..+.+...|.|.|+|.||+.+.+...+.....+.
T Consensus 8 ~~~~~l~~n~~~~~~~--------------~~~v~i~~~~~~~~~~i~i~d~g~g~~~~~~~~~~~~~~~~~-------- 65 (111)
T smart00387 8 QVLSNLLDNAIKYTPE--------------GGRITVTLERDGDHLEITVEDNGPGIPPEDLEKIFEPFFRTD-------- 65 (111)
T ss_pred HHHHHHHHHHHhcCCC--------------CCeEEEEEEEcCCEEEEEEEeCCCCCCHHHHHHHhcCeEECC--------
Confidence 3678899998888521 234566666665567899999999999998886554322110
Q ss_pred hhcccCCCCCccccccccccceecccccEE
Q 003827 186 KENNDLGADNGLIGQFGVGFYSAFLVAQKV 215 (793)
Q Consensus 186 ~~~~~~~~d~~~IGqFGIGf~S~F~VadkV 215 (793)
......++.|+|++.|-.++.+.
T Consensus 66 -------~~~~~~~~~g~gl~~~~~~~~~~ 88 (111)
T smart00387 66 -------GRSRKIGGTGLGLSIVKKLVELH 88 (111)
T ss_pred -------CCCCCCCcccccHHHHHHHHHHc
Confidence 11234567899999888876654
No 29
>TIGR01058 parE_Gpos DNA topoisomerase IV, B subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation step of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=97.25 E-value=0.00048 Score=82.34 Aligned_cols=160 Identities=18% Similarity=0.155 Sum_probs=89.1
Q ss_pred HHHHHhHhhHhhHHHhhhhhhccCCCCCCCCCCceEEEEECCCCcEEEEEeCCCCCCHHHHH-------HHHhhhcccCc
Q 003827 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELV-------DCLGTIAQSGT 178 (793)
Q Consensus 106 vflRELIsNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~eeL~-------~~L~tIa~Sgt 178 (793)
..+.|+|.||+|=.- ....-.|+|.++. ++.|+|.|||.||+.+--. +.+.++..+|.
T Consensus 37 hlv~EIvdNavDE~~--------------ag~~~~I~V~i~~-dgsitV~DnGrGIPv~~h~~~~~~~~E~v~t~LhaGg 101 (637)
T TIGR01058 37 HLVWEIVDNSVDEVL--------------AGYADNITVTLHK-DNSITVQDDGRGIPTGIHQDGNISTVETVFTVLHAGG 101 (637)
T ss_pred eehhhhhcchhhhhh--------------cCCCcEEEEEEcC-CCeEEEEECCCcccCcccCcCCCccceeEEEEecccC
Confidence 456799999999421 1133478887774 4699999999999863111 11112222322
Q ss_pred hhHHHHhhhcccCCCCCccccccccccceecccccEEEEEEecCCCCCeEEEEEccCCceEEEEccCCCCCCCCCCeEEE
Q 003827 179 SKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADSSSYVIREETDPEKLLKRGTQIT 258 (793)
Q Consensus 179 ~~f~~~l~~~~~~~~d~~~IGqFGIGf~S~F~VadkV~V~Tr~~~~~~~~~w~s~~~~~~~i~~~~~~~~~~~~~GT~I~ 258 (793)
+ | . ...-.-.-|.-|+|.-.+=.++++++|.+++.+..-.-.|+. | +. .+.+... .+....+||+|+
T Consensus 102 k-f----d----~~~ykvSGGlhGvG~svvNAlS~~~~V~v~r~gk~~~q~f~~-G-g~-~~~~l~~-~~~~~~~GT~V~ 168 (637)
T TIGR01058 102 K-F----D----QGGYKTAGGLHGVGASVVNALSSWLEVTVKRDGQIYQQRFEN-G-GK-IVQSLKK-IGTTKKTGTLVH 168 (637)
T ss_pred c-C----C----CCcccccCCcccccccccceeeceEEEEEEECCEEEEEEEec-C-Cc-CcCCccc-ccCCCCCceEEE
Confidence 1 1 1 111223558899999999999999999998655212223432 1 11 1111110 122346999998
Q ss_pred EEecCCC--cccCCchhhHHHHHHhhcCCC-ccCeEecc
Q 003827 259 LYLKEDD--KYEFSEPTRIQGLVKNYSQFV-SFPIYTWQ 294 (793)
Q Consensus 259 L~Lk~d~--~~e~~~~~~i~~li~~ys~fi-~~pI~l~~ 294 (793)
..-...- . .-++.+.|.+-++..+-.. ..-|++++
T Consensus 169 F~PD~~iF~~-~~f~~d~l~~RlrelA~Ln~GL~I~l~d 206 (637)
T TIGR01058 169 FHPDPTIFKT-TQFNSNIIKERLKESAFLLKKLKLTFTD 206 (637)
T ss_pred EEeCHHHcCC-CccCHHHHHHHHHHHhccCCCcEEEEEe
Confidence 7743321 0 1134456766666666322 34555554
No 30
>cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins
Probab=97.21 E-value=0.0016 Score=56.44 Aligned_cols=86 Identities=21% Similarity=0.346 Sum_probs=57.6
Q ss_pred HHHHHhHhhHhhHHHhhhhhhccCCCCCCCCCCceEEEEECCCCcEEEEEeCCCCCCHHHHHHHHhhhcccCchhHHHHh
Q 003827 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKAL 185 (793)
Q Consensus 106 vflRELIsNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~eeL~~~L~tIa~Sgt~~f~~~l 185 (793)
.+++|||.||.++... ....+.|.+..+...-.|.|.|+|.||+...+...+...+.+
T Consensus 3 ~~~~~ll~Na~~~~~~-------------~~~~v~i~~~~~~~~~~v~i~d~g~g~~~~~~~~~~~~~~~~--------- 60 (103)
T cd00075 3 QVLLNLLSNAIKHTPE-------------GGGRITISVERDGDHLEIRVEDNGPGIPEEDLERIFERFSDG--------- 60 (103)
T ss_pred HHHHHHHHHHHHhCcC-------------CCCeEEEEEEecCCEEEEEEEeCCCCCCHHHHHHHhhhhhcC---------
Confidence 4789999999999631 123445555555444678999999999999987655432111
Q ss_pred hhcccCCCCCccccccccccceeccccc----EEEEEEe
Q 003827 186 KENNDLGADNGLIGQFGVGFYSAFLVAQ----KVVVSTK 220 (793)
Q Consensus 186 ~~~~~~~~d~~~IGqFGIGf~S~F~Vad----kV~V~Tr 220 (793)
......+.+|+|++.+-.+++ .+.+.+.
T Consensus 61 -------~~~~~~~~~g~gl~~~~~~~~~~~g~~~~~~~ 92 (103)
T cd00075 61 -------SRSRKGGGTGLGLSIVKKLVELHGGRIEVESE 92 (103)
T ss_pred -------CCCCCCCccccCHHHHHHHHHHcCCEEEEEeC
Confidence 112234678999998888876 6666553
No 31
>PRK10604 sensor protein RstB; Provisional
Probab=97.06 E-value=0.0014 Score=74.69 Aligned_cols=78 Identities=18% Similarity=0.270 Sum_probs=50.5
Q ss_pred HHHHHhHhhHhhHHHhhhhhhccCCCCCCCCCCceEEEEECCCCcEEEEEeCCCCCCHHHHHHHHhhhcccCchhHHHHh
Q 003827 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKAL 185 (793)
Q Consensus 106 vflRELIsNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~eeL~~~L~tIa~Sgt~~f~~~l 185 (793)
.++..||+||+.+. .+.+.|.+..+.+.-.|+|.|||.||+.+++..-+....+..
T Consensus 322 ~vl~NLl~NAik~~----------------~~~I~I~~~~~~~~~~I~V~D~G~Gi~~e~~~~if~~f~r~~-------- 377 (433)
T PRK10604 322 RVLDNLLNNALRYA----------------HSRVRVSLLLDGNQACLIVEDDGPGIPPEERERVFEPFVRLD-------- 377 (433)
T ss_pred HHHHHHHHHHHHhC----------------CCeEEEEEEEECCEEEEEEEEcCCCCCHHHHhhcCCCCccCC--------
Confidence 46788888888763 244566666665566799999999999999886554322210
Q ss_pred hhcccCCCCCccccccccccceeccccc
Q 003827 186 KENNDLGADNGLIGQFGVGFYSAFLVAQ 213 (793)
Q Consensus 186 ~~~~~~~~d~~~IGqFGIGf~S~F~Vad 213 (793)
......-|.+|+|++-+-.+++
T Consensus 378 ------~~~~~~~~g~GLGL~ivk~i~~ 399 (433)
T PRK10604 378 ------PSRDRATGGCGLGLAIVHSIAL 399 (433)
T ss_pred ------CCCCCCCCCccchHHHHHHHHH
Confidence 0111223678999976555543
No 32
>PRK10755 sensor protein BasS/PmrB; Provisional
Probab=97.03 E-value=0.0015 Score=72.00 Aligned_cols=76 Identities=20% Similarity=0.373 Sum_probs=49.4
Q ss_pred HHHHHhHhhHhhHHHhhhhhhccCCCCCCCCCCceEEEEECCCCcEEEEEeCCCCCCHHHHHHHHhhhcccCchhHHHHh
Q 003827 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKAL 185 (793)
Q Consensus 106 vflRELIsNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~eeL~~~L~tIa~Sgt~~f~~~l 185 (793)
..+..||+||..+.. ..+.+.|.+..+.+.-.|+|+|||+||+++++..-+...-+.
T Consensus 250 ~il~nLi~NA~k~~~--------------~~~~I~I~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~--------- 306 (356)
T PRK10755 250 LLLRNLVENAHRYSP--------------EGSTITIKLSQEDGGAVLAVEDEGPGIDESKCGELSKAFVRM--------- 306 (356)
T ss_pred HHHHHHHHHHHhhCC--------------CCCcEEEEEEEcCCEEEEEEEECCCCCCHHHHHHhCCCeEeC---------
Confidence 467889999877631 124456666555556689999999999999987544221110
Q ss_pred hhcccCCCCCccccccccccceeccccc
Q 003827 186 KENNDLGADNGLIGQFGVGFYSAFLVAQ 213 (793)
Q Consensus 186 ~~~~~~~~d~~~IGqFGIGf~S~F~Vad 213 (793)
+ ..-|.+|+|++-|-.+++
T Consensus 307 --------~-~~~~g~GlGL~i~~~i~~ 325 (356)
T PRK10755 307 --------D-SRYGGIGLGLSIVSRITQ 325 (356)
T ss_pred --------C-CCCCCcCHHHHHHHHHHH
Confidence 0 012468999987776654
No 33
>PRK09470 cpxA two-component sensor protein; Provisional
Probab=96.99 E-value=0.0021 Score=72.92 Aligned_cols=76 Identities=24% Similarity=0.258 Sum_probs=48.8
Q ss_pred HHHHHhHhhHhhHHHhhhhhhccCCCCCCCCCCceEEEEECCCCcEEEEEeCCCCCCHHHHHHHHhhhcccCchhHHHHh
Q 003827 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKAL 185 (793)
Q Consensus 106 vflRELIsNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~eeL~~~L~tIa~Sgt~~f~~~l 185 (793)
..+++||+||..+. ...+.|++..+.+.-.|+|.|||+||+.+++...+...-+..
T Consensus 356 ~~l~nli~NA~~~~----------------~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~~~~~~-------- 411 (461)
T PRK09470 356 SALENIVRNALRYS----------------HTKIEVAFSVDKDGLTITVDDDGPGVPEEEREQIFRPFYRVD-------- 411 (461)
T ss_pred HHHHHHHHHHHHhC----------------CCcEEEEEEEECCEEEEEEEECCCCCCHHHHHHhcCCCccCC--------
Confidence 35788999988762 134566666665556799999999999998876553211110
Q ss_pred hhcccCCCCCccccccccccceeccc
Q 003827 186 KENNDLGADNGLIGQFGVGFYSAFLV 211 (793)
Q Consensus 186 ~~~~~~~~d~~~IGqFGIGf~S~F~V 211 (793)
......-+.+|+|++-+=.+
T Consensus 412 ------~~~~~~~~g~GlGL~iv~~~ 431 (461)
T PRK09470 412 ------EARDRESGGTGLGLAIVENA 431 (461)
T ss_pred ------cccCCCCCCcchhHHHHHHH
Confidence 01112346789998765544
No 34
>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional
Probab=96.94 E-value=0.0019 Score=73.61 Aligned_cols=80 Identities=20% Similarity=0.353 Sum_probs=50.0
Q ss_pred HHHHhHhhHhhHHHhhhhhhccCCCCCCCCCCceEEEEECCCCcEEEEEeCCCCCCHHHHHHHHhhhcccCchhHHHHhh
Q 003827 107 FLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKALK 186 (793)
Q Consensus 107 flRELIsNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~eeL~~~L~tIa~Sgt~~f~~~l~ 186 (793)
.+..||.||+.+.. ..+.+.|.+..+.+.-.|+|.|||.||+++++..-+...-+..
T Consensus 356 vl~nll~NAi~~~~--------------~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~e~~~~lf~~~~~~~--------- 412 (466)
T PRK10549 356 LFNNLLENSLRYTD--------------SGGSLHISAEQRDKTLRLTFADSAPGVSDEQLQKLFERFYRTE--------- 412 (466)
T ss_pred HHHHHHHHHHHhCC--------------CCCEEEEEEEEcCCEEEEEEEecCCCcCHHHHHHhccCcccCC---------
Confidence 56788888877731 1244555555555555789999999999999876553322210
Q ss_pred hcccCCCCCccccccccccceecccccE
Q 003827 187 ENNDLGADNGLIGQFGVGFYSAFLVAQK 214 (793)
Q Consensus 187 ~~~~~~~d~~~IGqFGIGf~S~F~Vadk 214 (793)
+......|..|+|++-|-.+++.
T Consensus 413 -----~~~~~~~~g~GlGL~iv~~i~~~ 435 (466)
T PRK10549 413 -----GSRNRASGGSGLGLAICLNIVEA 435 (466)
T ss_pred -----CCcCCCCCCCcHHHHHHHHHHHH
Confidence 11122446789999876666443
No 35
>KOG0019 consensus Molecular chaperone (HSP90 family) [Posttranslational modification, protein turnover, chaperones]
Probab=96.94 E-value=3.1e-05 Score=89.00 Aligned_cols=228 Identities=8% Similarity=-0.106 Sum_probs=166.6
Q ss_pred CHHHHHHHHHHHhHHhheecccCcccHHhhcCccceeeccCCCcccCHHHHHHhcccCCCeEEEEecCCHHHHhhChhHH
Q 003827 480 NKEDYKKFWENFGRFLKLGCVEDSGNHKRLAPLLRFYTSKSEEELISLDEYVENMGEKQNAIYYLATDSLKSAKSAPFLE 559 (793)
Q Consensus 480 d~e~y~kf~~~fg~~lK~G~~eD~~~~~~l~~LLrF~Ts~~~~~~~SL~eYv~rmke~Qk~IYY~~~~s~~~~~~Sp~lE 559 (793)
+-..+..+|+.|...+..++-+.-.....-.... +...-.-....|.+++ .+.+++...++....+.-.+.+.....
T Consensus 375 e~a~d~e~Y~kFy~~f~~~lk~gi~e~s~~~~k~-~a~lLry~ss~s~~~~--~Sl~dYv~rm~~~qk~iyyi~~~s~~~ 451 (656)
T KOG0019|consen 375 DLAKDAEKYKKFFKNYGLFLKEGIVTASEQQVKE-IAKLLRYESSKSGEGA--TSLDDYVERMREGQKNIYYITAPNRQL 451 (656)
T ss_pred HHhhhHHHHHHHHHHHhhhhhhcccchhhhhhhH-HHHHhhhhcccccccc--ccHHHHHHhhcccccceEEeccchhhh
Confidence 4568999999999999998888766655555554 3333223355777888 666778888898888877777777787
Q ss_pred HHHhcCceEEecCCCchHHHHHHHhhccCcceeeccccccCCCCchhHh---hHhhHHHHHHHHHHHHHHhccceeEEEE
Q 003827 560 KLVQKDIEVLYLIEPIDEVAIQNLQTFNEKKFVDISKEDLELGDEDEVK---ERETKQEFNLLCDWIKQQLGDKVAKVQV 636 (793)
Q Consensus 560 ~~~~kG~eVL~l~dpiDE~~l~~L~e~~gkkf~~V~k~~l~l~~~~e~~---~e~~~~e~~~L~~~lk~~L~~kV~~V~v 636 (793)
+-.+-+||++..-++.+.||++.+.+|....++......+..-..+..+ .++.+.+.....+-++. |- ..+
T Consensus 452 ~~~sp~~E~~k~~~~evly~~ep~DE~~~~~Lk~~~~k~lVsvtkEglel~e~ee~~~k~ee~k~efe~-lc-----k~m 525 (656)
T KOG0019|consen 452 AESSPYYEAFKKKNYEVLFMYEPADEVVLLGLKEFKGKKLVSVTKEGVELPEDDEEKAKDEESKKEFEE-LC-----KWM 525 (656)
T ss_pred hhcchHHHHHHhcCceeEeeeccHHHHHHHhhhhhcccceeccchhhccCCccchhHHHHHHHHHHHHH-HH-----HHH
Confidence 8888899999999999999999999999999998888877533222111 12223332222222222 21 234
Q ss_pred eecCCCCCeEEEeCCCCccHHHHHHHHHHhcCCCCcccccccceeEEeCCCChHHHHHHHhhhcCCCchHHHHHHHHHHH
Q 003827 637 SKRLSSSPCVLVSGKFGWSANMERLMKAQALGDTSSLEFMRGRRILEINPDHPIVKDLNAACKNAPDSTDAKRAVDLLYD 716 (793)
Q Consensus 637 S~RL~~sP~~lv~~e~g~s~~Merimkaq~~~d~~~~~~~~~kk~LEINp~HpLIk~L~~~~~~~~~d~~~~~l~~lLyd 716 (793)
+.+|.+ +|+-|+..+.++.++..|+..+..++++|...|.+++..+.|+.|-+.- .+..+-+++.+.++.+-.+.+.
T Consensus 526 K~iL~~-kVekV~vs~RlvssPc~I~t~~~gwsAnmeriMkAqal~d~s~~~ym~~--kk~lEINP~hpivk~L~~~~~~ 602 (656)
T KOG0019|consen 526 KEILGS-KVEKVTVNNRLVSHPAMITTLEYGWAARMERIMKAQALTDNETMGYMKA--KKHLEINPDHPLVKTLRQLRES 602 (656)
T ss_pred HHHhcC-ceEEEEecCcccCCceEEEecccccchhHHHHHhhhhccccChhhhccc--cceeeeCCCChHHHHHHHHHhc
Confidence 577876 9999988999999999999887655777778899999999999998876 4456668888999998766654
Q ss_pred HHH
Q 003827 717 TAL 719 (793)
Q Consensus 717 ~AL 719 (793)
...
T Consensus 603 dk~ 605 (656)
T KOG0019|consen 603 DKN 605 (656)
T ss_pred Ccc
Confidence 433
No 36
>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase. Members of this protein family have a novel N-terminal domain, a single predicted membrane-spanning helix, and a predicted cystosolic histidine kinase domain. We designate this protein PrsK, and its companion DNA-binding response regulator protein (TIGR02915) PrsR. These predicted signal-transducing proteins appear to enable enhancer-dependent transcriptional activation. The prsK gene is often associated with exopolysaccharide biosynthesis genes.
Probab=96.91 E-value=0.0019 Score=78.25 Aligned_cols=74 Identities=26% Similarity=0.359 Sum_probs=48.2
Q ss_pred HHHHHhHhhHhhHHHhhhhhhccCCCCCCCCCCceEEEEECCCCcEEEEEeCCCCCCHHHHHHHHhhhcccCchhHHHHh
Q 003827 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKAL 185 (793)
Q Consensus 106 vflRELIsNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~eeL~~~L~tIa~Sgt~~f~~~l 185 (793)
..+.+||+||.++.. ..+.+.|++..+.+.-.|+|.|||.||+++.+.+.+-.-..++
T Consensus 582 ~vl~nLl~NAik~~~--------------~~~~I~I~~~~~~~~~~i~V~D~G~Gi~~~~i~~~lF~pf~~~-------- 639 (679)
T TIGR02916 582 RVLGHLVQNALEATP--------------GEGRVAIRVERECGAARIEIEDSGCGMSPAFIRERLFKPFDTT-------- 639 (679)
T ss_pred HHHHHHHHHHHHhCC--------------CCCcEEEEEEEcCCEEEEEEEEcCCCcChHHHHHhcCCCCCCC--------
Confidence 367888899888841 1244555555545556799999999999998555442211110
Q ss_pred hhcccCCCCCccccccccccceecccc
Q 003827 186 KENNDLGADNGLIGQFGVGFYSAFLVA 212 (793)
Q Consensus 186 ~~~~~~~~d~~~IGqFGIGf~S~F~Va 212 (793)
.. +..|+|++.|-.++
T Consensus 640 -------~~----~G~GLGL~i~~~iv 655 (679)
T TIGR02916 640 -------KG----AGMGIGVYECRQYV 655 (679)
T ss_pred -------CC----CCcchhHHHHHHHH
Confidence 11 56799998877663
No 37
>TIGR01386 cztS_silS_copS heavy metal sensor kinase. Members of this family contain a sensor histidine kinase domain (Pfam:PF00512) and a domain found in bacterial signal proteins (Pfam:PF00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.
Probab=96.85 E-value=0.0027 Score=71.73 Aligned_cols=79 Identities=19% Similarity=0.291 Sum_probs=49.4
Q ss_pred HHHHHhHhhHhhHHHhhhhhhccCCCCCCCCCCceEEEEECCCCcEEEEEeCCCCCCHHHHHHHHhhhcccCchhHHHHh
Q 003827 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKAL 185 (793)
Q Consensus 106 vflRELIsNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~eeL~~~L~tIa~Sgt~~f~~~l 185 (793)
.++.+||.||..+.. ..+.+.|++..+.+.-.|+|.|||.||+.+.+...|...-++..
T Consensus 356 ~~~~nll~Nai~~~~--------------~~~~I~i~~~~~~~~~~i~v~D~G~g~~~~~~~~~~~~~~~~~~------- 414 (457)
T TIGR01386 356 RAISNLLSNALRHTP--------------DGGTITVRIERRSDEVRVSVSNPGPGIPPEHLSRLFDRFYRVDP------- 414 (457)
T ss_pred HHHHHHHHHHHHcCC--------------CCceEEEEEEecCCEEEEEEEeCCCCCCHHHHHHhccccccCCc-------
Confidence 357888888887731 12345555555444457999999999999998876644322210
Q ss_pred hhcccCCCCCccccccccccceecccc
Q 003827 186 KENNDLGADNGLIGQFGVGFYSAFLVA 212 (793)
Q Consensus 186 ~~~~~~~~d~~~IGqFGIGf~S~F~Va 212 (793)
.....-+..|+|++-+--++
T Consensus 415 -------~~~~~~~g~GlGL~i~~~~~ 434 (457)
T TIGR01386 415 -------ARSNSGEGTGLGLAIVRSIM 434 (457)
T ss_pred -------ccCCCCCCccccHHHHHHHH
Confidence 01112356899987766553
No 38
>PRK11006 phoR phosphate regulon sensor protein; Provisional
Probab=96.81 E-value=0.0028 Score=72.06 Aligned_cols=80 Identities=18% Similarity=0.260 Sum_probs=49.6
Q ss_pred hHHHHHhHhhHhhHHHhhhhhhccCCCCCCCCCCceEEEEECCCCcEEEEEeCCCCCCHHHHHHHHhhhcccCchhHHHH
Q 003827 105 EVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKA 184 (793)
Q Consensus 105 ~vflRELIsNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~eeL~~~L~tIa~Sgt~~f~~~ 184 (793)
..++..||+||..+.. ..+.+.|.+..+.+.-.|+|.|||+||+.+++..-+...-+..
T Consensus 319 ~~vl~NLl~NAik~~~--------------~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~------- 377 (430)
T PRK11006 319 RSAISNLVYNAVNHTP--------------EGTHITVRWQRVPQGAEFSVEDNGPGIAPEHIPRLTERFYRVD------- 377 (430)
T ss_pred HHHHHHHHHHHHhcCC--------------CCCeEEEEEEEcCCEEEEEEEEcCCCCCHHHHHHhccCccccc-------
Confidence 3467889999988842 1233444444454556799999999999999876443221110
Q ss_pred hhhcccCCCCCccccccccccceecccc
Q 003827 185 LKENNDLGADNGLIGQFGVGFYSAFLVA 212 (793)
Q Consensus 185 l~~~~~~~~d~~~IGqFGIGf~S~F~Va 212 (793)
.......|..|+|++-|-.++
T Consensus 378 -------~~~~~~~~G~GLGL~ivk~iv 398 (430)
T PRK11006 378 -------KARSRQTGGSGLGLAIVKHAL 398 (430)
T ss_pred -------CCCCCCCCCCchHHHHHHHHH
Confidence 001122356799998776663
No 39
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL. NifL is a modulator of the nitrogen fixation positive regulator protein NifA, and is therefore a negative regulator. It binds NifA. NifA and NifL are encoded by adjacent genes.
Probab=96.81 E-value=0.0036 Score=70.86 Aligned_cols=78 Identities=19% Similarity=0.293 Sum_probs=49.6
Q ss_pred hHHHHHhHhhHhhHHHhhhhhhccCCCCCCCCCCceEEEEE--CCCCcEEEEEeCCCCCCHHHHHHHHhhhcccCchhHH
Q 003827 105 EVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKP--DPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFL 182 (793)
Q Consensus 105 ~vflRELIsNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~--d~~~~~l~I~DnGiGMt~eeL~~~L~tIa~Sgt~~f~ 182 (793)
...+..|+.||.+++... ......|.|.. ..+.-.|+|.|||+||+.+....-|....++
T Consensus 389 ~~vl~Nl~~NAik~~~~~------------~~~~~~i~i~~~~~~~~~~~~V~D~G~Gi~~~~~~~iF~~f~~~------ 450 (494)
T TIGR02938 389 RSLFKALVDNAIEAMNIK------------GWKRRELSITTALNGDLIVVSILDSGPGIPQDLRYKVFEPFFTT------ 450 (494)
T ss_pred HHHHHHHHHHHHHHhhcc------------CCCcceEEEEEEecCCEEEEEEEeCCCCCCHHHHHHhcCCCccc------
Confidence 347899999999996421 01122455543 4445679999999999998887655432211
Q ss_pred HHhhhcccCCCCCccccccccccceeccc
Q 003827 183 KALKENNDLGADNGLIGQFGVGFYSAFLV 211 (793)
Q Consensus 183 ~~l~~~~~~~~d~~~IGqFGIGf~S~F~V 211 (793)
.....+.-|+|++-+-.+
T Consensus 451 -----------~~~~~~G~GlGL~i~~~i 468 (494)
T TIGR02938 451 -----------KGGSRKHIGMGLSVAQEI 468 (494)
T ss_pred -----------CCCCCCCCcccHHHHHHH
Confidence 001145578998877665
No 40
>PRK11100 sensory histidine kinase CreC; Provisional
Probab=96.76 E-value=0.0043 Score=70.35 Aligned_cols=78 Identities=22% Similarity=0.211 Sum_probs=48.5
Q ss_pred HHHHHhHhhHhhHHHhhhhhhccCCCCCCCCCCceEEEEECCCCcEEEEEeCCCCCCHHHHHHHHhhhcccCchhHHHHh
Q 003827 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKAL 185 (793)
Q Consensus 106 vflRELIsNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~eeL~~~L~tIa~Sgt~~f~~~l 185 (793)
..+.+||.||..+.. +.+.+.|++..+.+.-.|+|+|||.||+.+++...+.. ..+..
T Consensus 371 ~vl~nli~Na~~~~~--------------~~~~i~i~~~~~~~~~~i~i~D~G~Gi~~~~~~~i~~~-~~~~~------- 428 (475)
T PRK11100 371 QALGNLLDNAIDFSP--------------EGGTITLSAEVDGEQVALSVEDQGPGIPDYALPRIFER-FYSLP------- 428 (475)
T ss_pred HHHHHHHHHHHHhCC--------------CCCEEEEEEEEcCCEEEEEEEECCCCCCHHHHHHHHHH-HccCC-------
Confidence 457888888887731 12345555555555567999999999999988765532 22100
Q ss_pred hhcccCCCCCccccccccccceecccc
Q 003827 186 KENNDLGADNGLIGQFGVGFYSAFLVA 212 (793)
Q Consensus 186 ~~~~~~~~d~~~IGqFGIGf~S~F~Va 212 (793)
..+ ..-+..|+|++.|-.++
T Consensus 429 ------~~~-~~~~~~GlGL~i~~~~~ 448 (475)
T PRK11100 429 ------RPA-NGRKSTGLGLAFVREVA 448 (475)
T ss_pred ------CCC-CCCCCcchhHHHHHHHH
Confidence 001 11245689998877664
No 41
>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR. Members of this protein family are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter in most Proteobacteria. Related proteins from Gram-positive organisms are not included in this model. The phoR gene usually is adjacent to the response regulator phoB gene (TIGR02154).
Probab=96.54 E-value=0.0062 Score=65.14 Aligned_cols=78 Identities=26% Similarity=0.339 Sum_probs=47.2
Q ss_pred HHHHhHhhHhhHHHhhhhhhccCCCCCCCCCCceEEEEECCCCcEEEEEeCCCCCCHHHHHHHHhhhcccCchhHHHHhh
Q 003827 107 FLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKALK 186 (793)
Q Consensus 107 flRELIsNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~eeL~~~L~tIa~Sgt~~f~~~l~ 186 (793)
++.+||.||+.+.. ....+.|.+....+.-.|.|.|||.||+.+.+...+....+..
T Consensus 233 vl~nll~Nai~~~~--------------~~~~i~i~~~~~~~~~~i~i~d~G~gi~~~~~~~if~~~~~~~--------- 289 (333)
T TIGR02966 233 AFSNLVSNAIKYTP--------------EGGTITVRWRRDGGGAEFSVTDTGIGIAPEHLPRLTERFYRVD--------- 289 (333)
T ss_pred HHHHHHHHhheeCC--------------CCCeEEEEEEEcCCEEEEEEEecCCCCCHHHHhhhccCceecC---------
Confidence 67889999887731 1233444444444445799999999999998876543221110
Q ss_pred hcccCCCCCccccccccccceecccc
Q 003827 187 ENNDLGADNGLIGQFGVGFYSAFLVA 212 (793)
Q Consensus 187 ~~~~~~~d~~~IGqFGIGf~S~F~Va 212 (793)
......-+..|+|++.|-.++
T Consensus 290 -----~~~~~~~~g~glGL~~~~~~~ 310 (333)
T TIGR02966 290 -----KSRSRDTGGTGLGLAIVKHVL 310 (333)
T ss_pred -----cccccCCCCCcccHHHHHHHH
Confidence 000112245699998877664
No 42
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=96.44 E-value=0.0063 Score=75.65 Aligned_cols=50 Identities=24% Similarity=0.418 Sum_probs=36.3
Q ss_pred HHHHHhHhhHhhHHHhhhhhhccCCCCCCCCCCceEEEEECCCCcEEEEEeCCCCCCHHHHHHHH
Q 003827 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCL 170 (793)
Q Consensus 106 vflRELIsNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~eeL~~~L 170 (793)
..|..||+||+.+.. .+.+.|++..+.+.-.|+|.|||+||+.+++..-+
T Consensus 516 ~il~NLl~NAik~~~---------------~g~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if 565 (921)
T PRK15347 516 QILVNLLGNAVKFTE---------------TGGIRLRVKRHEQQLCFTVEDTGCGIDIQQQQQIF 565 (921)
T ss_pred HHHHHHHHHHhhcCC---------------CCCEEEEEEEcCCEEEEEEEEcCCCCCHHHHHHHh
Confidence 367788899988731 24455555555555678999999999999987654
No 43
>PLN03128 DNA topoisomerase 2; Provisional
Probab=96.38 E-value=0.014 Score=73.92 Aligned_cols=95 Identities=23% Similarity=0.309 Sum_probs=63.9
Q ss_pred hHHHHHhHhhHhhHHHhhhhhhccCCCCCCCCCCceEEEEECCCCcEEEEEeCCCCCCHHHHH-------H-HHhhhccc
Q 003827 105 EVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELV-------D-CLGTIAQS 176 (793)
Q Consensus 105 ~vflRELIsNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~eeL~-------~-~L~tIa~S 176 (793)
.-.+.|.|.||.|-.. | +...-.|.|.++.+++.|+|.|||-||+-+--. . .|+.+-+|
T Consensus 54 ~ki~dEIldNAvDe~~--~-----------~g~~~~I~V~i~~~dgsIsV~DnGrGIPv~ih~~~g~~~~ElIft~LhaG 120 (1135)
T PLN03128 54 YKIFDEILVNAADNKQ--R-----------DPSMDSLKVDIDVEQNTISVYNNGKGIPVEIHKEEGVYVPELIFGHLLTS 120 (1135)
T ss_pred HHHHHHHHHHHHHHhh--h-----------cCCCcEEEEEEEcCCCeEEEEecCccccCCCCCCCCCccceEEEEeeccc
Confidence 4578999999999631 1 112347888888878899999999999864211 1 12222233
Q ss_pred CchhHHHHhhhcccCCCCCccccccccccceecccccEEEEEEecC
Q 003827 177 GTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSP 222 (793)
Q Consensus 177 gt~~f~~~l~~~~~~~~d~~~IGqFGIGf~S~F~VadkV~V~Tr~~ 222 (793)
| + | . .....-.-|.-|+|.-.+=.++.+++|++...
T Consensus 121 g-k-F----d----d~~ykvSGGlhGvGasvvNaLS~~f~Vev~d~ 156 (1135)
T PLN03128 121 S-N-F----D----DNEKKTTGGRNGYGAKLANIFSTEFTVETADG 156 (1135)
T ss_pred c-c-c----C----CccceeeccccCCCCeEEEeecCeEEEEEEEC
Confidence 3 1 2 1 11122356899999988999999999999843
No 44
>PRK10815 sensor protein PhoQ; Provisional
Probab=96.38 E-value=0.0076 Score=70.19 Aligned_cols=98 Identities=16% Similarity=0.157 Sum_probs=60.3
Q ss_pred HHHHhHhhHhhHHHhhhhhhccCCCCCCCCCCceEEEEECCCCcEEEEEeCCCCCCHHHHHHHHhhhcccCchhHHHHhh
Q 003827 107 FLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKALK 186 (793)
Q Consensus 107 flRELIsNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~eeL~~~L~tIa~Sgt~~f~~~l~ 186 (793)
++.-||.||+.++. ..+.|.+..+.+.-.|+|.|||.||+.+++..-+... ..+
T Consensus 382 vl~NLi~NAik~~~----------------~~i~I~~~~~~~~v~I~V~D~G~GI~~e~~~~iF~~f-~~~--------- 435 (485)
T PRK10815 382 VMGNVLDNACKYCL----------------EFVEISARQTDEHLHIVVEDDGPGIPESKRELIFDRG-QRA--------- 435 (485)
T ss_pred HHHHHHHHHHHhcC----------------CcEEEEEEEeCCEEEEEEEECCCCcCHHHHHHHhCCc-ccC---------
Confidence 67788888888752 2345555555445579999999999999987654321 100
Q ss_pred hcccCCCCCccccccccccceecccccEEEEEEecCCCCCeEEEEEccCCceEEEEccCCCCCCCCCCeEEEEEecCC
Q 003827 187 ENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADSSSYVIREETDPEKLLKRGTQITLYLKED 264 (793)
Q Consensus 187 ~~~~~~~d~~~IGqFGIGf~S~F~VadkV~V~Tr~~~~~~~~~w~s~~~~~~~i~~~~~~~~~~~~~GT~I~L~Lk~d 264 (793)
+ ..-+..|+|++-|--+++. .+ |.+.+... .+.||++++.++..
T Consensus 436 -------~-~~~~G~GLGL~Ivk~iv~~-------~g------------G~i~v~s~-------~~~Gt~f~i~lp~~ 479 (485)
T PRK10815 436 -------D-TLRPGQGLGLSVAREITEQ-------YE------------GKISAGDS-------PLGGARMEVIFGRQ 479 (485)
T ss_pred -------C-CCCCCcchhHHHHHHHHHH-------cC------------CEEEEEEC-------CCCEEEEEEEEcCC
Confidence 0 0113479999877666431 12 23444332 25789999888654
No 45
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=96.34 E-value=0.0094 Score=74.59 Aligned_cols=75 Identities=24% Similarity=0.350 Sum_probs=51.3
Q ss_pred HHHHHhHhhHhhHHHhhhhhhccCCCCCCCCCCceEEEEECCCC-cEEEEEeCCCCCCHHHHHHHHhhhcccCchhHHHH
Q 003827 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPEN-GTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKA 184 (793)
Q Consensus 106 vflRELIsNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~-~~l~I~DnGiGMt~eeL~~~L~tIa~Sgt~~f~~~ 184 (793)
-.+..||+||+.+.. .+.+.|.+....+. -.|.|.|||+||+.+++..-|....+.
T Consensus 582 ~il~nLi~NAik~~~---------------~g~i~i~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~-------- 638 (968)
T TIGR02956 582 QVLINLVGNAIKFTD---------------RGSVVLRVSLNDDSSLLFEVEDTGCGIAEEEQATLFDAFTQA-------- 638 (968)
T ss_pred HHHHHHHHHHHhhCC---------------CCeEEEEEEEcCCCeEEEEEEeCCCCCCHHHHHHHHhhhhcc--------
Confidence 378899999998841 24566777666666 679999999999999987665432211
Q ss_pred hhhcccCCCCCccccccccccceeccc
Q 003827 185 LKENNDLGADNGLIGQFGVGFYSAFLV 211 (793)
Q Consensus 185 l~~~~~~~~d~~~IGqFGIGf~S~F~V 211 (793)
.....-|..|+|++-|-.+
T Consensus 639 --------~~~~~~~g~GLGL~i~~~l 657 (968)
T TIGR02956 639 --------DGRRRSGGTGLGLAISQRL 657 (968)
T ss_pred --------CCCCCCCCccHHHHHHHHH
Confidence 1112236689998766555
No 46
>PRK11086 sensory histidine kinase DcuS; Provisional
Probab=96.33 E-value=0.014 Score=67.70 Aligned_cols=54 Identities=19% Similarity=0.359 Sum_probs=37.9
Q ss_pred HHHHHhHhhHhhHHHhhhhhhccCCCCCCCCCCceEEEEECCCCcEEEEEeCCCCCCHHHHHHHHh
Q 003827 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLG 171 (793)
Q Consensus 106 vflRELIsNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~eeL~~~L~ 171 (793)
..+.+|+.||.+|+.. ...+.+.|++..+.+.-.|+|.|||.||+.+++...|.
T Consensus 436 ~vl~nLl~NAi~~~~~------------~~~~~I~i~~~~~~~~~~i~V~D~G~gi~~~~~~~iF~ 489 (542)
T PRK11086 436 TILGNLIENALEAVGG------------EEGGEISVSLHYRNGWLHCEVSDDGPGIAPDEIDAIFD 489 (542)
T ss_pred HHHHHHHHHHHHHhhc------------CCCcEEEEEEEEcCCEEEEEEEECCCCCCHHHHHHHHh
Confidence 3578999999999631 01233445554454456789999999999999886653
No 47
>PRK15053 dpiB sensor histidine kinase DpiB; Provisional
Probab=96.30 E-value=0.013 Score=68.47 Aligned_cols=77 Identities=19% Similarity=0.281 Sum_probs=48.6
Q ss_pred HHHHhHhhHhhHHHhhhhhhccCCCCCCCCCCceEEEEE--CCCCcEEEEEeCCCCCCHHHHHHHHhhhcccCchhHHHH
Q 003827 107 FLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKP--DPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKA 184 (793)
Q Consensus 107 flRELIsNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~--d~~~~~l~I~DnGiGMt~eeL~~~L~tIa~Sgt~~f~~~ 184 (793)
.+.+||+||++|+.+. ..+...|.|.. +.+.-.|.|.|||.||+++++..-|.. +.+.+
T Consensus 436 vl~nLl~NAi~~~~~~------------~~~~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~iF~~-~~~tk------ 496 (545)
T PRK15053 436 IVGNLLDNAFEASLRS------------DEGNKIVELFLSDEGDDVVIEVADQGCGVPESLRDKIFEQ-GVSTR------ 496 (545)
T ss_pred HHHHHHHHHHHHHhhC------------CCCCceEEEEEEECCCEEEEEEEeCCCCcCHHHHHHHhCC-CCCCC------
Confidence 5789999999997421 11223455544 333456899999999999988765532 22211
Q ss_pred hhhcccCCCCCccccccccccceecccc
Q 003827 185 LKENNDLGADNGLIGQFGVGFYSAFLVA 212 (793)
Q Consensus 185 l~~~~~~~~d~~~IGqFGIGf~S~F~Va 212 (793)
. .--|..|+|++.+-.++
T Consensus 497 ---------~-~~~~g~GlGL~ivk~iv 514 (545)
T PRK15053 497 ---------A-DEPGEHGIGLYLIASYV 514 (545)
T ss_pred ---------C-CCCCCceeCHHHHHHHH
Confidence 0 11245699998877664
No 48
>PRK10364 sensor protein ZraS; Provisional
Probab=96.22 E-value=0.015 Score=66.50 Aligned_cols=51 Identities=24% Similarity=0.364 Sum_probs=36.5
Q ss_pred HHHHHhHhhHhhHHHhhhhhhccCCCCCCCCCCceEEEEECCCCcEEEEEeCCCCCCHHHHHHHH
Q 003827 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCL 170 (793)
Q Consensus 106 vflRELIsNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~eeL~~~L 170 (793)
..+..||.||.+|+. ..+.+.|.+..+.+.-.|+|.|||.||+++.+..-|
T Consensus 351 ~il~NLl~NA~k~~~--------------~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if 401 (457)
T PRK10364 351 QVLLNLYLNAIQAIG--------------QHGVISVTASESGAGVKISVTDSGKGIAADQLEAIF 401 (457)
T ss_pred HHHHHHHHHHHHhcC--------------CCCeEEEEEEEeCCeEEEEEEECCCCCCHHHHHHHh
Confidence 346778889998852 123455555555555689999999999999887655
No 49
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=96.18 E-value=0.012 Score=73.39 Aligned_cols=73 Identities=26% Similarity=0.422 Sum_probs=48.2
Q ss_pred HHHHhHhhHhhHHHhhhhhhccCCCCCCCCCCceEEEEECCCCcEEEEEeCCCCCCHHHHHHHHhhhcccCchhHHHHhh
Q 003827 107 FLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKALK 186 (793)
Q Consensus 107 flRELIsNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~eeL~~~L~tIa~Sgt~~f~~~l~ 186 (793)
.+..||+||+.+.. .+.+.|.+..+.+.-.|.|.|||+||+.+++...|...-+.
T Consensus 565 il~NLl~NAik~~~---------------~g~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~---------- 619 (914)
T PRK11466 565 VITNLLSNALRFTD---------------EGSIVLRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQPFVQV---------- 619 (914)
T ss_pred HHHHHHHHHHHhCC---------------CCeEEEEEEEcCCEEEEEEEECCCCCCHHHHHHHhchhhcC----------
Confidence 67888999888731 24455555555555679999999999999987655321110
Q ss_pred hcccCCCCCccccccccccceecccc
Q 003827 187 ENNDLGADNGLIGQFGVGFYSAFLVA 212 (793)
Q Consensus 187 ~~~~~~~d~~~IGqFGIGf~S~F~Va 212 (793)
....|..|+|++-|-.++
T Consensus 620 --------~~~~~g~GLGL~i~~~l~ 637 (914)
T PRK11466 620 --------SGKRGGTGLGLTISSRLA 637 (914)
T ss_pred --------CCCCCCCcccHHHHHHHH
Confidence 011256899988766553
No 50
>PHA02569 39 DNA topoisomerase II large subunit; Provisional
Probab=96.16 E-value=0.0079 Score=71.70 Aligned_cols=128 Identities=17% Similarity=0.182 Sum_probs=73.6
Q ss_pred hHHHHHhHhhHhhHHHhhhhhhccCCCCCCCCCCceEEEEECCCCcEEEEEeCCCCCCHHHHHH--H--------Hhhhc
Q 003827 105 EVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVD--C--------LGTIA 174 (793)
Q Consensus 105 ~vflRELIsNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~eeL~~--~--------L~tIa 174 (793)
...+.|+|.||+|=.- + ++. ....+|.|.++ ++.|+|+|||-||+-+--.+ . ..++.
T Consensus 47 ~hi~~EIldNavDe~~--~-----~~~----g~~~~I~V~i~--dgsisV~dnGrGIPv~~h~~~~g~~~~~~E~i~t~L 113 (602)
T PHA02569 47 VKIIDEIIDNSVDEAI--R-----TNF----KFANKIDVTIK--NNQVTVSDNGRGIPQAMVTTPEGEEIPGPVAAWTRT 113 (602)
T ss_pred eeeeehhhhhhhhhhh--c-----cCC----CCCcEEEEEEc--CCEEEEEECCCcccCCcccccccccccceEEEEEee
Confidence 3456799999999521 1 110 12447888777 67899999999998643211 0 11233
Q ss_pred ccCchhHHHHhhhcccCCCCCccccccccccceecccccEEEEEEecCCCCCeEEEEEccCCceEEEEccCCCCCCCCCC
Q 003827 175 QSGTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADSSSYVIREETDPEKLLKRG 254 (793)
Q Consensus 175 ~Sgt~~f~~~l~~~~~~~~d~~~IGqFGIGf~S~F~VadkV~V~Tr~~~~~~~~~w~s~~~~~~~i~~~~~~~~~~~~~G 254 (793)
.+|.+ | + +...-.-|.-|||.-.+=.++.+++|+++..+..-...|. +|. ...+.. .+....+|
T Consensus 114 haGgk-F-d--------~~ykvSGGlhGVG~svvNaLS~~~~V~v~~~~~~~~q~f~---~G~-~~~~~~--~~~~~~~G 177 (602)
T PHA02569 114 KAGSN-F-D--------DTNRVTGGMNGVGSSLTNFFSVLFIGETCDGKNEVTVNCS---NGA-ENISWS--TKPGKGKG 177 (602)
T ss_pred ccccc-c-C--------CcceeeCCcCCccceeeeccchhhheEEEcCCEEEEEEec---CCc-ccCCcc--cCCCCCCc
Confidence 33322 3 1 0122356899999988888999999988643311122332 221 111111 12234699
Q ss_pred eEEEEEe
Q 003827 255 TQITLYL 261 (793)
Q Consensus 255 T~I~L~L 261 (793)
|+|+..-
T Consensus 178 T~V~F~P 184 (602)
T PHA02569 178 TSVTFIP 184 (602)
T ss_pred cEEEEEE
Confidence 9998774
No 51
>PTZ00108 DNA topoisomerase 2-like protein; Provisional
Probab=96.14 E-value=0.013 Score=74.99 Aligned_cols=133 Identities=22% Similarity=0.290 Sum_probs=80.0
Q ss_pred hHHHHHhHhhHhhHHHhhhhhhccCCCCCCCCCCceEEEEECCCCcEEEEEeCCCCCCHHHHHH--------HHhhhccc
Q 003827 105 EVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVD--------CLGTIAQS 176 (793)
Q Consensus 105 ~vflRELIsNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~eeL~~--------~L~tIa~S 176 (793)
.-.+.|+|.||+|-.. | ++ .....-.|.|.++.+.+.|+|.|||-||+-+--.. .|+.+-+|
T Consensus 59 ~ki~dEIldNAvDe~~--r-----~~---~~g~~~~I~V~i~~d~g~IsV~dnGrGIPv~~h~~~~~~~pElIft~L~aG 128 (1388)
T PTZ00108 59 YKIFDEILVNAADNKA--R-----DK---GGHRMTYIKVTIDEENGEISVYNDGEGIPVQIHKEHKIYVPEMIFGHLLTS 128 (1388)
T ss_pred hhhHHHHhhhhhhhhc--c-----cC---CCCCccEEEEEEeccCCeEEEEecCCcccCCCCCCCCCccceEEEEEeecc
Confidence 4578999999999632 1 10 01234578888888878999999999997642110 13333333
Q ss_pred CchhHHHHhhhcccCCCCCccccccccccceecccccEEEEEEecCCCCCeE--EEEEccCCceEEEEccCCCCCCC-CC
Q 003827 177 GTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQY--VWEAEADSSSYVIREETDPEKLL-KR 253 (793)
Q Consensus 177 gt~~f~~~l~~~~~~~~d~~~IGqFGIGf~S~F~VadkV~V~Tr~~~~~~~~--~w~s~~~~~~~i~~~~~~~~~~~-~~ 253 (793)
|+ | . .....-.-|.-|+|.-.+=.++.+++|++.....+..| .|..... . ...+... . ... .+
T Consensus 129 gk--f----d----d~~yKvSGGlhGVGasvvNalS~~f~Vev~r~~~gk~y~q~f~~Gm~-~-~~~p~i~-~-~~~~~~ 194 (1388)
T PTZ00108 129 SN--Y----D----DTEKRVTGGRNGFGAKLTNIFSTKFTVECVDSKSGKKFKMTWTDNMS-K-KSEPRIT-S-YDGKKD 194 (1388)
T ss_pred cc--C----C----CCceeeecccccCCccccccccceEEEEEEECCCCCEEEEEecCCCc-C-CCCCccC-C-CCCCCC
Confidence 31 2 1 11223467899999988999999999999986323334 4542210 1 0111110 0 012 68
Q ss_pred CeEEEEEe
Q 003827 254 GTQITLYL 261 (793)
Q Consensus 254 GT~I~L~L 261 (793)
||+|+..-
T Consensus 195 GT~VtF~P 202 (1388)
T PTZ00108 195 YTKVTFYP 202 (1388)
T ss_pred ceEEEEEe
Confidence 99998763
No 52
>PLN03237 DNA topoisomerase 2; Provisional
Probab=96.13 E-value=0.014 Score=74.61 Aligned_cols=163 Identities=19% Similarity=0.221 Sum_probs=92.3
Q ss_pred hHHHHHhHhhHhhHHHhhhhhhccCCCCCCCCCCceEEEEECCCCcEEEEEeCCCCCCHHHHH-------H-HHhhhccc
Q 003827 105 EVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELV-------D-CLGTIAQS 176 (793)
Q Consensus 105 ~vflRELIsNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~eeL~-------~-~L~tIa~S 176 (793)
.-.+.|.|.||.|-.- | +..-..|.|.++.+++.|+|.|||-||+-+--. . .|+.+-+|
T Consensus 79 ~kifdEIldNAvDe~~--r-----------~g~~~~I~V~I~~~~gsIsV~DnGRGIPV~iH~~eg~~~pElIft~LhAG 145 (1465)
T PLN03237 79 YKIFDEILVNAADNKQ--R-----------DPKMDSLRVVIDVEQNLISVYNNGDGVPVEIHQEEGVYVPEMIFGHLLTS 145 (1465)
T ss_pred hhhHHHHhhhhHhHHh--h-----------cCCCCEEEEEEEcCCCEEEEEecCccccCCCCCCCCCccceEEEEeeecc
Confidence 4578999999999631 1 123347888888788899999999999864111 1 12332333
Q ss_pred CchhHHHHhhhcccCCCCCccccccccccceecccccEEEEEEecCCCCCeE--EEEEccCC-ceEEEEccCCCCCCCCC
Q 003827 177 GTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQY--VWEAEADS-SSYVIREETDPEKLLKR 253 (793)
Q Consensus 177 gt~~f~~~l~~~~~~~~d~~~IGqFGIGf~S~F~VadkV~V~Tr~~~~~~~~--~w~s~~~~-~~~i~~~~~~~~~~~~~ 253 (793)
| + | . .....-.-|.-|+|.-.+=.++.+++|+++.......| .|....+. .-.+... .....+
T Consensus 146 g-k-F----d----d~~yKvSGGlhGVGasvvNaLS~~f~Vev~Dg~~gk~y~Q~f~~nmG~~~~p~i~~----~~~~~~ 211 (1465)
T PLN03237 146 S-N-Y----D----DNEKKTTGGRNGYGAKLTNIFSTEFVIETADGKRQKKYKQVFSNNMGKKSEPVITK----CKKSEN 211 (1465)
T ss_pred c-c-C----C----CCcceeeccccccCccccccccCeeEEEEEECCCCeEEEEEEeCCCCccCCceecc----CCCCCC
Confidence 3 1 2 1 11122456899999988999999999999833223344 46532111 1111111 111369
Q ss_pred CeEEEEEecCC---CcccCCchhhHHHHHHhh---cCCC--ccCeEecccc
Q 003827 254 GTQITLYLKED---DKYEFSEPTRIQGLVKNY---SQFV--SFPIYTWQEK 296 (793)
Q Consensus 254 GT~I~L~Lk~d---~~~e~~~~~~i~~li~~y---s~fi--~~pI~l~~~~ 296 (793)
||+|+..-... .. + ++.+.|..+.++. +.|+ ..-|+|++++
T Consensus 212 GT~VtF~PD~eiF~~~-~-fd~D~l~~~~rRlrdLAa~LnkGlkI~LndeR 260 (1465)
T PLN03237 212 WTKVTFKPDLAKFNMT-H-LEDDVVALMKKRVVDIAGCLGKTVKVELNGKR 260 (1465)
T ss_pred ceEEEEEECHHHhCCc-e-EcHHHHHHHHHHHHHHHhccCCCcEEEEEecC
Confidence 99998763211 01 2 2344554443443 4455 3667776653
No 53
>PRK09467 envZ osmolarity sensor protein; Provisional
Probab=96.11 E-value=0.017 Score=65.18 Aligned_cols=75 Identities=17% Similarity=0.223 Sum_probs=45.0
Q ss_pred HHHHhHhhHhhHHHhhhhhhccCCCCCCCCCCceEEEEECCCCcEEEEEeCCCCCCHHHHHHHHhhhcccCchhHHHHhh
Q 003827 107 FLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKALK 186 (793)
Q Consensus 107 flRELIsNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~eeL~~~L~tIa~Sgt~~f~~~l~ 186 (793)
.+..||.||+.+. .+.+.|.+..+.+.-.|+|.|||.||+.+++...+....+. .
T Consensus 335 il~NLl~NA~k~~----------------~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~~~~~f~~~-~-------- 389 (435)
T PRK09467 335 ALANLVVNAARYG----------------NGWIKVSSGTEGKRAWFQVEDDGPGIPPEQLKHLFQPFTRG-D-------- 389 (435)
T ss_pred HHHHHHHHHHHhC----------------CCeEEEEEEecCCEEEEEEEecCCCcCHHHHHHhcCCcccC-C--------
Confidence 4566667765442 23445555555444579999999999999987655332111 0
Q ss_pred hcccCCCCCccccccccccceeccccc
Q 003827 187 ENNDLGADNGLIGQFGVGFYSAFLVAQ 213 (793)
Q Consensus 187 ~~~~~~~d~~~IGqFGIGf~S~F~Vad 213 (793)
... .-+.+|+|++-|-.+++
T Consensus 390 ------~~~-~~~g~GlGL~iv~~i~~ 409 (435)
T PRK09467 390 ------SAR-GSSGTGLGLAIVKRIVD 409 (435)
T ss_pred ------CCC-CCCCeehhHHHHHHHHH
Confidence 011 12568999876666543
No 54
>PRK11360 sensory histidine kinase AtoS; Provisional
Probab=96.00 E-value=0.017 Score=67.11 Aligned_cols=50 Identities=26% Similarity=0.411 Sum_probs=35.2
Q ss_pred HHHHhHhhHhhHHHhhhhhhccCCCCCCCCCCceEEEEECCCC-cEEEEEeCCCCCCHHHHHHHH
Q 003827 107 FLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPEN-GTITITDTGIGMTKEELVDCL 170 (793)
Q Consensus 107 flRELIsNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~-~~l~I~DnGiGMt~eeL~~~L 170 (793)
++.+||.||+.+.. ..+.+.|.+..+.+. -.|.|+|||+||+.+.+..-+
T Consensus 504 ~~~nli~na~~~~~--------------~~~~i~v~~~~~~~~~~~i~v~D~G~G~~~~~~~~~f 554 (607)
T PRK11360 504 VLLNILINAVQAIS--------------ARGKIRIRTWQYSDGQVAVSIEDNGCGIDPELLKKIF 554 (607)
T ss_pred HHHHHHHHHHHHhc--------------CCCeEEEEEEEcCCCEEEEEEEeCCCCCCHHHHhhhc
Confidence 57788888887742 123445555444445 679999999999999887544
No 55
>PTZ00109 DNA gyrase subunit b; Provisional
Probab=95.95 E-value=0.0089 Score=73.04 Aligned_cols=103 Identities=18% Similarity=0.233 Sum_probs=63.8
Q ss_pred hHHHHHhHhhHhhHHHhhhhhhccCCCCCCCCCCceEEEEECCCCcEEEEEeCCCCCCHHHHH-------HHHhhhcccC
Q 003827 105 EVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELV-------DCLGTIAQSG 177 (793)
Q Consensus 105 ~vflRELIsNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~eeL~-------~~L~tIa~Sg 177 (793)
...+.|+|.||+|=.. ....-.|.|.+++ .+.|+|+|||-||+-+.-. +...|+..+|
T Consensus 131 hhLv~EIlDNSVDE~l--------------aG~~~~I~V~i~~-DgsItV~DnGRGIPvd~h~k~g~s~~E~VlT~LhAG 195 (903)
T PTZ00109 131 HQLLFEILDNSVDEYL--------------AGECNKITVVLHK-DGSVEISDNGRGIPCDVSEKTGKSGLETVLTVLHSG 195 (903)
T ss_pred eEEEEEEeeccchhhc--------------cCCCcEEEEEEcC-CCeEEEEeCCccccccccccCCCcceeEEEEEeccC
Confidence 3467999999999421 1133477777765 4699999999999864321 1222344454
Q ss_pred chhHHHHh----hhc--------------------------ccC--CCCCccccccccccceecccccEEEEEEecCC
Q 003827 178 TSKFLKAL----KEN--------------------------NDL--GADNGLIGQFGVGFYSAFLVAQKVVVSTKSPR 223 (793)
Q Consensus 178 t~~f~~~l----~~~--------------------------~~~--~~d~~~IGqFGIGf~S~F~VadkV~V~Tr~~~ 223 (793)
.+ |-... ..+ .+. +.-.-.-|.-|||.-.+=.++.+++|.+++.+
T Consensus 196 GK-F~~~~~~~~~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~~~~~YkvSGGLHGVG~SVVNALS~~l~VeV~RdG 272 (903)
T PTZ00109 196 GK-FQDTFPKNSRSDKSEDKNDTKSSKKGKSSHVKGPKEAKEKESSQMYEYSSGLHGVGLSVVNALSSFLKVDVFKGG 272 (903)
T ss_pred cc-ccCcccccccccccccccccccccccccccccccccccccccCCcceecCcCCCcceeeeeeccCeEEEEEEECC
Confidence 32 21100 000 000 00113578899999888899999999999865
No 56
>COG0187 GyrB Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair]
Probab=95.92 E-value=0.02 Score=67.24 Aligned_cols=163 Identities=17% Similarity=0.169 Sum_probs=93.3
Q ss_pred CchHHHHHhHhhHhhHHHhhhhhhccCCCCCCCCCCceEEEEECCCCcEEEEEeCCCCCCHHH--------HHHHHhhhc
Q 003827 103 HKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEE--------LVDCLGTIA 174 (793)
Q Consensus 103 ~~~vflRELIsNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~ee--------L~~~L~tIa 174 (793)
+...-+.|.|.||+|=-- .+..-.|.|.++ .++.|+|.|||-||+-+- +.-.| |..
T Consensus 36 GLhHlv~EVvDNsiDEal--------------aG~~~~I~V~l~-~d~sisV~DnGRGIPvdiH~~~~~~~vEvI~-T~L 99 (635)
T COG0187 36 GLHHLVWEVVDNSIDEAL--------------AGYADRIDVTLH-EDGSISVEDNGRGIPVDIHPKEKVSAVEVIF-TVL 99 (635)
T ss_pred cceeeEeEeeechHhHHh--------------hCcCcEEEEEEc-CCCeEEEEECCCCCccccCCCCCCCceEEEE-Eee
Confidence 345678899999999521 124457888777 568999999999998764 22122 222
Q ss_pred ccCchhHHHHhhhcccCCCCCccccccccccceecccccEEEEEEecCCCCCeEEEEEccCCceEEEEccCCCCCCCCCC
Q 003827 175 QSGTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADSSSYVIREETDPEKLLKRG 254 (793)
Q Consensus 175 ~Sgt~~f~~~l~~~~~~~~d~~~IGqFGIGf~S~F~VadkV~V~Tr~~~~~~~~~w~s~~~~~~~i~~~~~~~~~~~~~G 254 (793)
..|.+ | . .+.-.-.=|--|||.--+=.++++++|.+++.+.--.-.|+ .|...-.+.... ......+|
T Consensus 100 HAGGK-F----d----~~~YkvSGGLHGVG~SVVNALS~~l~v~v~r~gk~y~q~f~-~G~~~~~l~~ig--~~~~~~~G 167 (635)
T COG0187 100 HAGGK-F----D----NDSYKVSGGLHGVGVSVVNALSTWLEVEVKRDGKIYRQRFE-RGVPVTPLEVIG--STDTKKTG 167 (635)
T ss_pred ccCcc-c----C----CCccEeecCCCccceEEEecccceEEEEEEECCEEEEEEEe-CCCcCCCceecc--cCCCCCCc
Confidence 33321 1 1 01111244779999988889999999999986521112232 121111122111 11234689
Q ss_pred eEEEEEecCCC---cccCCchhhHHHHHHhhcCCC-ccCeEeccc
Q 003827 255 TQITLYLKEDD---KYEFSEPTRIQGLVKNYSQFV-SFPIYTWQE 295 (793)
Q Consensus 255 T~I~L~Lk~d~---~~e~~~~~~i~~li~~ys~fi-~~pI~l~~~ 295 (793)
|+|+.+-.+.- . +| +...|++.++.++=.. ..-|.+..+
T Consensus 168 T~V~F~PD~~iF~~~-~f-~~~~l~~RlrelA~L~~gl~I~l~d~ 210 (635)
T COG0187 168 TKVRFKPDPEIFGET-EF-DYEILKRRLRELAFLNKGVKITLTDE 210 (635)
T ss_pred cEEEEEcChHhcCCc-cc-CHHHHHHHHHHHhccCCCCEEEEEec
Confidence 99987633220 1 22 3456777777665322 366776553
No 57
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=95.87 E-value=0.023 Score=69.68 Aligned_cols=78 Identities=23% Similarity=0.324 Sum_probs=50.6
Q ss_pred HHHHHhHhhHhhHHHhhhhhhccCCCCCCCCCCceEEEEEC-CCCcEEEEEeCCCCCCHHHHHHHHhhhcccCchhHHHH
Q 003827 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPD-PENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKA 184 (793)
Q Consensus 106 vflRELIsNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d-~~~~~l~I~DnGiGMt~eeL~~~L~tIa~Sgt~~f~~~ 184 (793)
-.+..||.||.++. ..+.+.|.+... .+.-.|+|.|||+||+.+++..-|...-+.
T Consensus 401 qvl~NLl~NAik~~---------------~~g~v~i~~~~~~~~~~~i~V~D~G~Gi~~~~~~~iF~~f~~~-------- 457 (779)
T PRK11091 401 QILWNLISNAVKFT---------------QQGGVTVRVRYEEGDMLTFEVEDSGIGIPEDELDKIFAMYYQV-------- 457 (779)
T ss_pred HHHHHHHHHHHHhC---------------CCCcEEEEEEEccCCEEEEEEEecCCCCCHHHHHHHHHHhhcc--------
Confidence 46789999999884 124566666665 334578999999999999987655432211
Q ss_pred hhhcccCCCCCccccccccccceeccc
Q 003827 185 LKENNDLGADNGLIGQFGVGFYSAFLV 211 (793)
Q Consensus 185 l~~~~~~~~d~~~IGqFGIGf~S~F~V 211 (793)
+ ........|.-|+|++-|-.+
T Consensus 458 -~----~~~~~~~~~GtGLGL~i~~~i 479 (779)
T PRK11091 458 -K----DSHGGKPATGTGIGLAVSKRL 479 (779)
T ss_pred -c----CCCCCCCCCCcchHHHHHHHH
Confidence 0 001222346678998776655
No 58
>PRK10337 sensor protein QseC; Provisional
Probab=95.81 E-value=0.022 Score=64.70 Aligned_cols=72 Identities=19% Similarity=0.224 Sum_probs=45.2
Q ss_pred HHHHhHhhHhhHHHhhhhhhccCCCCCCCCCCceEEEEECCCCcEEEEEeCCCCCCHHHHHHHHhhhcccCchhHHHHhh
Q 003827 107 FLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKALK 186 (793)
Q Consensus 107 flRELIsNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~eeL~~~L~tIa~Sgt~~f~~~l~ 186 (793)
+++.||.||..+.. ....|.|.... ..|+|.|||.||+++++..-+...-+.
T Consensus 356 vl~Nli~NA~k~~~----------------~~~~i~i~~~~--~~i~i~D~G~Gi~~~~~~~if~~f~~~---------- 407 (449)
T PRK10337 356 LVRNLLDNAIRYSP----------------QGSVVDVTLNA--RNFTVRDNGPGVTPEALARIGERFYRP---------- 407 (449)
T ss_pred HHHHHHHHHHhhCC----------------CCCeEEEEEEe--eEEEEEECCCCCCHHHHHHhcccccCC----------
Confidence 67888888887731 12235554432 379999999999999988655332211
Q ss_pred hcccCCCCCccccccccccceeccccc
Q 003827 187 ENNDLGADNGLIGQFGVGFYSAFLVAQ 213 (793)
Q Consensus 187 ~~~~~~~d~~~IGqFGIGf~S~F~Vad 213 (793)
+..-.+..|+|+.-|-.+++
T Consensus 408 -------~~~~~~g~GlGL~iv~~i~~ 427 (449)
T PRK10337 408 -------PGQEATGSGLGLSIVRRIAK 427 (449)
T ss_pred -------CCCCCCccchHHHHHHHHHH
Confidence 01122458999876665543
No 59
>PRK09303 adaptive-response sensory kinase; Validated
Probab=95.78 E-value=0.033 Score=62.69 Aligned_cols=77 Identities=18% Similarity=0.277 Sum_probs=46.7
Q ss_pred HHHHHhHhhHhhHHHhhhhhhccCCCCCCCCCCceEEEEECCC-CcEEEEEeCCCCCCHHHHHHHHhhhcccCchhHHHH
Q 003827 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPE-NGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKA 184 (793)
Q Consensus 106 vflRELIsNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~-~~~l~I~DnGiGMt~eeL~~~L~tIa~Sgt~~f~~~ 184 (793)
-++..||.||+.+.. ..+.+.|.+....+ .-.|+|.|||.||+.+++...|...-+.
T Consensus 275 qvl~NLl~NAik~~~--------------~~~~I~i~~~~~~~~~v~i~V~D~G~GI~~~~~~~iF~pf~~~-------- 332 (380)
T PRK09303 275 QVLLNLLDNAIKYTP--------------EGGTITLSMLHRTTQKVQVSICDTGPGIPEEEQERIFEDRVRL-------- 332 (380)
T ss_pred HHHHHHHHHHHhcCC--------------CCceEEEEEEecCCCEEEEEEEEcCCCCCHHHHHHHccCceeC--------
Confidence 467788888887741 12333343333223 3568999999999999887655321111
Q ss_pred hhhcccCCCCCccccccccccceecccc
Q 003827 185 LKENNDLGADNGLIGQFGVGFYSAFLVA 212 (793)
Q Consensus 185 l~~~~~~~~d~~~IGqFGIGf~S~F~Va 212 (793)
......+..|+|++-|..++
T Consensus 333 --------~~~~~~~G~GLGL~i~~~iv 352 (380)
T PRK09303 333 --------PRDEGTEGYGIGLSVCRRIV 352 (380)
T ss_pred --------CCCCCCCcccccHHHHHHHH
Confidence 00112356899998877764
No 60
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=95.76 E-value=0.023 Score=71.44 Aligned_cols=78 Identities=22% Similarity=0.323 Sum_probs=49.7
Q ss_pred HHHHHhHhhHhhHHHhhhhhhccCCCCCCCCCCceEEEEECCCCcEEEEEeCCCCCCHHHHHHHHhhhcccCchhHHHHh
Q 003827 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKAL 185 (793)
Q Consensus 106 vflRELIsNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~eeL~~~L~tIa~Sgt~~f~~~l 185 (793)
-.+.-||+||+.+.. .+.+.|.+..+.+.-.|+|.|||+||+.+++..-+...-+.+
T Consensus 565 qvl~NLl~NAik~t~---------------~G~I~I~v~~~~~~l~i~V~DtG~GI~~e~~~~lFepF~~~~-------- 621 (924)
T PRK10841 565 QVISNLLSNAIKFTD---------------TGCIVLHVRVDGDYLSFRVRDTGVGIPAKEVVRLFDPFFQVG-------- 621 (924)
T ss_pred HHHHHHHHHHHhhCC---------------CCcEEEEEEEeCCEEEEEEEEcCcCCCHHHHHHHhcccccCC--------
Confidence 467889999988731 244556665554445789999999999999876553222111
Q ss_pred hhcccCCCCCccccccccccceecccc
Q 003827 186 KENNDLGADNGLIGQFGVGFYSAFLVA 212 (793)
Q Consensus 186 ~~~~~~~~d~~~IGqFGIGf~S~F~Va 212 (793)
.......+..|+|++-|-.++
T Consensus 622 ------~~~~~~~~GtGLGL~I~k~lv 642 (924)
T PRK10841 622 ------TGVQRNFQGTGLGLAICEKLI 642 (924)
T ss_pred ------CCCCCCCCCeehhHHHHHHHH
Confidence 001112345799998776664
No 61
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=95.60 E-value=0.032 Score=69.33 Aligned_cols=86 Identities=19% Similarity=0.332 Sum_probs=52.1
Q ss_pred HHHHHhHhhHhhHHHhhhhhhccCCCCCCCCCCceEEEEECC--CC---cEEEEEeCCCCCCHHHHHHHHhhhcccCchh
Q 003827 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDP--EN---GTITITDTGIGMTKEELVDCLGTIAQSGTSK 180 (793)
Q Consensus 106 vflRELIsNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~--~~---~~l~I~DnGiGMt~eeL~~~L~tIa~Sgt~~ 180 (793)
..+..||+||+.+.. .+.+.|.+.... +. -.|.|.|||+||+++++..-+...-+..
T Consensus 411 ~vl~NLl~NAik~~~---------------~g~v~i~v~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~--- 472 (919)
T PRK11107 411 QIITNLVGNAIKFTE---------------SGNIDILVELRALSNTKVQLEVQIRDTGIGISERQQSQLFQAFRQAD--- 472 (919)
T ss_pred HHHHHHHHHHhhcCC---------------CCcEEEEEEEEecCCCeeEEEEEEEEeCCCcCHHHHHHHhhhhccCC---
Confidence 367899999988742 244555555422 21 3589999999999999876553322110
Q ss_pred HHHHhhhcccCCCCCccccccccccceecccc----cEEEEEEe
Q 003827 181 FLKALKENNDLGADNGLIGQFGVGFYSAFLVA----QKVVVSTK 220 (793)
Q Consensus 181 f~~~l~~~~~~~~d~~~IGqFGIGf~S~F~Va----dkV~V~Tr 220 (793)
.......|..|+|++-|-.++ -++.|.|.
T Consensus 473 -----------~~~~~~~~g~GLGL~i~~~i~~~~gG~i~v~s~ 505 (919)
T PRK11107 473 -----------ASISRRHGGTGLGLVITQKLVNEMGGDISFHSQ 505 (919)
T ss_pred -----------CCCCCCCCCcchhHHHHHHHHHHhCCEEEEEec
Confidence 011123467899998766654 34555544
No 62
>PRK10490 sensor protein KdpD; Provisional
Probab=95.59 E-value=0.025 Score=70.79 Aligned_cols=77 Identities=18% Similarity=0.235 Sum_probs=48.0
Q ss_pred HHHHHhHhhHhhHHHhhhhhhccCCCCCCCCCCceEEEEECCCCcEEEEEeCCCCCCHHHHHHHHhhhcccCchhHHHHh
Q 003827 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKAL 185 (793)
Q Consensus 106 vflRELIsNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~eeL~~~L~tIa~Sgt~~f~~~l 185 (793)
..+..||+||+.+.. ..+.+.|.+..+.+.-.|.|.|||.||+.+++..-|...- ++
T Consensus 781 qVL~NLL~NAik~s~--------------~g~~I~I~~~~~~~~v~I~V~D~G~GI~~e~~~~IFepF~-~~-------- 837 (895)
T PRK10490 781 RVLINLLENAVKYAG--------------AQAEIGIDAHVEGERLQLDVWDNGPGIPPGQEQLIFDKFA-RG-------- 837 (895)
T ss_pred HHHHHHHHHHHHhCC--------------CCCeEEEEEEEeCCEEEEEEEECCCCCCHHHHHHhcCCCc-cC--------
Confidence 467888999888741 1234455555554556789999999999998875443211 11
Q ss_pred hhcccCCCCCccccccccccceecccc
Q 003827 186 KENNDLGADNGLIGQFGVGFYSAFLVA 212 (793)
Q Consensus 186 ~~~~~~~~d~~~IGqFGIGf~S~F~Va 212 (793)
......+..|+|++-|-.++
T Consensus 838 -------~~~~~~~G~GLGL~Ivk~iv 857 (895)
T PRK10490 838 -------NKESAIPGVGLGLAICRAIV 857 (895)
T ss_pred -------CCCCCCCCccHHHHHHHHHH
Confidence 01112245789987766653
No 63
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=95.59 E-value=0.034 Score=69.54 Aligned_cols=51 Identities=27% Similarity=0.307 Sum_probs=35.3
Q ss_pred HHHHHhHhhHhhHHHhhhhhhccCCCCCCCCCCceEEEEECCC---CcEEEEEeCCCCCCHHHHHHHHh
Q 003827 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPE---NGTITITDTGIGMTKEELVDCLG 171 (793)
Q Consensus 106 vflRELIsNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~---~~~l~I~DnGiGMt~eeL~~~L~ 171 (793)
-++.-||+||..+.. .+.+.|.+..... .-.|+|.|||+||+.+++..-+.
T Consensus 568 QVL~NLL~NAik~t~---------------~G~I~I~v~~~~~~~~~l~I~V~DtG~GI~~e~l~~IFe 621 (894)
T PRK10618 568 KILLLLLNYAITTTA---------------YGKITLEVDQDESSPDRLTIRILDTGAGVSIKELDNLHF 621 (894)
T ss_pred HHHHHHHHHHHHhCC---------------CCeEEEEEEEccCCCcEEEEEEEECCCCCCHHHHHHhcC
Confidence 367789999988741 2445555544322 24689999999999999886543
No 64
>TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase. This histidine kinase protein is paired with an adjacent response regulator (TIGR03787) gene. It co-occurs with a variant sortase enzyme (TIGR03784), usually in the same gene neighborhood, in proteobacterial species most of which are marine, and with an LPXTG motif-containing sortase target conserved protein (TIGR03788). Sortases and LPXTG proteins are far more common in Gram-positive bacteria, where sortase systems mediate attachment to the cell wall or cross-linking of pilin structures. We give this predicted sensor histidine kinase the gene symbol psdS, for Proteobacterial Dedicated Sortase system Sensor histidine kinase.
Probab=95.37 E-value=0.042 Score=67.10 Aligned_cols=80 Identities=18% Similarity=0.323 Sum_probs=50.6
Q ss_pred HHHHHhHhhHhhHHHhhhhhhccCCCCCCCCCCceEEEEECCCCcEEEEEeCCCCCCHHHHHHHHhhhcccCchhHHHHh
Q 003827 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKAL 185 (793)
Q Consensus 106 vflRELIsNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~eeL~~~L~tIa~Sgt~~f~~~l 185 (793)
..+..||+||..+.. ..+.+.|.+..+.+.-.|+|.|||.||+.+++..-+...-+. .
T Consensus 600 ~il~NLI~NAik~s~--------------~~~~I~I~~~~~~~~v~I~V~D~G~GI~~e~~~~IFe~F~t~-~------- 657 (703)
T TIGR03785 600 QMLDKLVDNAREFSP--------------EDGLIEVGLSQNKSHALLTVSNEGPPLPEDMGEQLFDSMVSV-R------- 657 (703)
T ss_pred HHHHHHHHHHHHHCC--------------CCCeEEEEEEEcCCEEEEEEEEcCCCCCHHHHHHHhCCCeec-C-------
Confidence 457788999888852 123455555555555679999999999999987655332211 0
Q ss_pred hhcccCCCCCccccccccccceeccccc
Q 003827 186 KENNDLGADNGLIGQFGVGFYSAFLVAQ 213 (793)
Q Consensus 186 ~~~~~~~~d~~~IGqFGIGf~S~F~Vad 213 (793)
.....--+..|+|++-|-.+++
T Consensus 658 ------~~~~~~~~g~GLGL~Ivr~Iv~ 679 (703)
T TIGR03785 658 ------DQGAQDQPHLGLGLYIVRLIAD 679 (703)
T ss_pred ------CCCCCCCCCccHHHHHHHHHHH
Confidence 0011112358999988776644
No 65
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=95.16 E-value=0.11 Score=64.54 Aligned_cols=82 Identities=24% Similarity=0.376 Sum_probs=52.7
Q ss_pred HHHHHhHhhHhhHHHhhhhhhccCCCCCCCCCCceEEEEEC---------------CCCcEEEEEeCCCCCCHHHHHHHH
Q 003827 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPD---------------PENGTITITDTGIGMTKEELVDCL 170 (793)
Q Consensus 106 vflRELIsNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d---------------~~~~~l~I~DnGiGMt~eeL~~~L 170 (793)
..+..||+||+.++. ..+.+.|.+... .+.-.|.|.|||+||+.+++..-|
T Consensus 563 qvl~NLl~NAik~~~--------------~~g~I~I~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~e~~~~iF 628 (828)
T PRK13837 563 QVLMNLCSNAAQAMD--------------GAGRVDISLSRAKLRAPKVLSHGVLPPGRYVLLRVSDTGAGIDEAVLPHIF 628 (828)
T ss_pred HHHHHHHHHHHHHcc--------------cCCeEEEEEEEeecccccccccccCCCCCEEEEEEEECCCCCCHHHHHHhh
Confidence 357888999988852 124455555544 222468999999999999887544
Q ss_pred hhhcccCchhHHHHhhhcccCCCCCccccccccccceeccc----ccEEEEEEec
Q 003827 171 GTIAQSGTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLV----AQKVVVSTKS 221 (793)
Q Consensus 171 ~tIa~Sgt~~f~~~l~~~~~~~~d~~~IGqFGIGf~S~F~V----adkV~V~Tr~ 221 (793)
...- + .. . +..|+|++-|-.+ +-++.|.|..
T Consensus 629 e~F~-~----------------~~-~--~G~GLGL~i~~~iv~~~gG~i~v~s~~ 663 (828)
T PRK13837 629 EPFF-T----------------TR-A--GGTGLGLATVHGIVSAHAGYIDVQSTV 663 (828)
T ss_pred CCcc-c----------------CC-C--CCCcchHHHHHHHHHHCCCEEEEEecC
Confidence 2111 1 01 1 6679999877665 3567777653
No 66
>PRK04069 serine-protein kinase RsbW; Provisional
Probab=95.16 E-value=0.026 Score=56.03 Aligned_cols=88 Identities=23% Similarity=0.315 Sum_probs=53.9
Q ss_pred hHHHHHhHhhHhhHHHhhhhhhccCCCCCCCCCCceEEEEECCCCcEEEEEeCCCCCCHHHHHHHHhhhcccCchhHHHH
Q 003827 105 EVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKA 184 (793)
Q Consensus 105 ~vflRELIsNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~eeL~~~L~tIa~Sgt~~f~~~ 184 (793)
..++.|++.||+....+ + ...+.+.|.+....+.-.|.|.|+|.||+.+.+...+.. ....
T Consensus 44 ~lav~Ea~~Nai~Hg~~-------~----~~~~~I~I~~~~~~~~l~i~V~D~G~g~d~~~~~~~~~p---~~~~----- 104 (161)
T PRK04069 44 KIAVSEACTNAVQHAYK-------E----DEVGEIHIRFEIYEDRLEIVVADNGVSFDYETLKSKLGP---YDIS----- 104 (161)
T ss_pred HHHHHHHHHHHHHhccC-------C----CCCCeEEEEEEEECCEEEEEEEECCcCCChHHhccccCC---CCCC-----
Confidence 35899999999998521 0 012445666666655678999999999997766543310 0000
Q ss_pred hhhcccCCCCCccccccccccceecccccEEEEEE
Q 003827 185 LKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVST 219 (793)
Q Consensus 185 l~~~~~~~~d~~~IGqFGIGf~S~F~VadkV~V~T 219 (793)
...+... .-|.|++-+-.++|++.+.+
T Consensus 105 ------~~~~~~~--~~G~GL~li~~l~d~v~~~~ 131 (161)
T PRK04069 105 ------KPIEDLR--EGGLGLFLIETLMDDVTVYK 131 (161)
T ss_pred ------CcccccC--CCceeHHHHHHHHHhEEEEc
Confidence 0001111 24778777777888887764
No 67
>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]
Probab=94.92 E-value=0.041 Score=64.27 Aligned_cols=53 Identities=28% Similarity=0.407 Sum_probs=37.2
Q ss_pred HHHhHhhHhhHHHhhhhhhccCCCCCCCCCCceEEEEECCCCcEEEEEeCCCCCCHHHHHHHHhh
Q 003827 108 LRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGT 172 (793)
Q Consensus 108 lRELIsNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~eeL~~~L~t 172 (793)
|--||+||.||+.- ...+.+.|+..-+.+.-.|+|+|||.|+..+-+...|.-
T Consensus 502 LvNLl~NALDA~~~------------~~~~~i~i~~~~~~~~v~l~VrDnGpGi~~e~~~~lFeP 554 (603)
T COG4191 502 LVNLLQNALDAMAG------------QEDRRLSIRAQREGGQVVLTVRDNGPGIAPEALPHLFEP 554 (603)
T ss_pred HHHHHHHHHHHhcC------------CCCCeeEEEEEecCCeEEEEEccCCCCCCHHHHHhhcCC
Confidence 33489999999742 112334444444555678999999999999988876643
No 68
>TIGR01925 spIIAB anti-sigma F factor. This model describes the SpoIIAB anti-sigma F factor. Sigma F regulates spore development in B subtilis. SpoIIAB binds to sigma F, preventing formation of the transcription complex at the promoter. SpoIIAA (anti-anti-sigma F factor) binds to SpoIIAB to inhibit association with sigma F, however SpoIIAB can phosphorylate SpoIIAA, causing disassociation of the SpoIIAA/B complex. The SpoIIE phosphatase dephosphorylates SpoIIAA.
Probab=94.89 E-value=0.11 Score=49.50 Aligned_cols=46 Identities=28% Similarity=0.292 Sum_probs=30.1
Q ss_pred HHHHHhHhhHhhHHHhhhhhhccCCCCCCCCCCceEEEEECCCCcEEEEEeCCCCCC
Q 003827 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMT 162 (793)
Q Consensus 106 vflRELIsNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt 162 (793)
.++.||++||+.+. |. . ...+.+.|.+....+.-.|.|.|+|.||+
T Consensus 42 ~~l~eli~Nai~h~----~~---~----~~~~~I~v~~~~~~~~~~i~I~D~G~gi~ 87 (137)
T TIGR01925 42 TAVSEAVTNAIIHG----YE---E----NCEGVVYISATIEDHEVYITVRDEGIGIE 87 (137)
T ss_pred HHHHHHHHHHHHhc----cC---C----CCCcEEEEEEEEeCCEEEEEEEEcCCCcC
Confidence 47899999988541 11 0 11234455555555556789999999997
No 69
>COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=94.84 E-value=0.039 Score=57.94 Aligned_cols=51 Identities=35% Similarity=0.524 Sum_probs=36.8
Q ss_pred hHHHHHhHhhHhhHHHhhhhhhccCCCCCCCCCCceEEEEECCCCcEEEEEeCCCCCCHHHHHHHH
Q 003827 105 EVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCL 170 (793)
Q Consensus 105 ~vflRELIsNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~eeL~~~L 170 (793)
...+..||+||.+|+. .+.+.|.+....+.-.|.|.|||.||+++.+...+
T Consensus 230 ~~vl~nLi~NAi~~~~---------------~~~i~i~~~~~~~~i~i~V~D~G~Gi~~~~~~~if 280 (336)
T COG0642 230 RQVLVNLLSNAIKYTP---------------GGEITISVRQDDEQVTISVEDTGPGIPEEELERIF 280 (336)
T ss_pred HHHHHHHHHHHhccCC---------------CCeEEEEEEecCCeEEEEEEcCCCCCCHHHHHHhc
Confidence 3478999999999962 24445555444334689999999999999965443
No 70
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=94.49 E-value=0.073 Score=68.55 Aligned_cols=76 Identities=24% Similarity=0.296 Sum_probs=46.9
Q ss_pred HHHHHhHhhHhhHHHhhhhhhccCCCCCCCCCCceEEEEE---CCCC--cEEEEEeCCCCCCHHHHHHHHhhhcccCchh
Q 003827 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKP---DPEN--GTITITDTGIGMTKEELVDCLGTIAQSGTSK 180 (793)
Q Consensus 106 vflRELIsNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~---d~~~--~~l~I~DnGiGMt~eeL~~~L~tIa~Sgt~~ 180 (793)
-.+..||+||+++.. .+.+.|.+.. +.+. -.|+|.|||+||+.+++..-|...-+.
T Consensus 831 qvl~NLl~NAik~~~---------------~g~i~i~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~iF~~f~~~---- 891 (1197)
T PRK09959 831 QVLSNLLSNALKFTT---------------EGAVKITTSLGHIDDNHAVIKMTIMDSGSGLSQEEQQQLFKRYSQT---- 891 (1197)
T ss_pred HHHHHHHHHHHHhCC---------------CCCEEEEEEEeeecCCceEEEEEEEEcCCCCCHHHHHHhhcccccc----
Confidence 477899999999852 1334455432 2222 347899999999999987654321111
Q ss_pred HHHHhhhcccCCCCCccccccccccceecccc
Q 003827 181 FLKALKENNDLGADNGLIGQFGVGFYSAFLVA 212 (793)
Q Consensus 181 f~~~l~~~~~~~~d~~~IGqFGIGf~S~F~Va 212 (793)
.....-+..|+|++-|-.++
T Consensus 892 ------------~~~~~~~G~GLGL~i~~~iv 911 (1197)
T PRK09959 892 ------------SAGRQQTGSGLGLMICKELI 911 (1197)
T ss_pred ------------ccCCCCCCcCchHHHHHHHH
Confidence 00112246899998776664
No 71
>PRK10547 chemotaxis protein CheA; Provisional
Probab=94.28 E-value=0.19 Score=60.91 Aligned_cols=55 Identities=27% Similarity=0.353 Sum_probs=33.7
Q ss_pred HHHhHhhHhhHHH----hhhhhhccCCCCCCCCCCceEEEEECCCCcEEEEEeCCCCCCHHHHHH
Q 003827 108 LRELVSNASDALD----KLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVD 168 (793)
Q Consensus 108 lRELIsNA~DA~~----k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~eeL~~ 168 (793)
|..||.||+|+.- .|+... . ...+.+.|+.....+.-.|+|.|||.||+.+.+..
T Consensus 390 L~hLirNAidHgie~p~~R~~~g--k----p~~G~I~l~a~~~~~~v~I~V~DdG~GId~e~i~~ 448 (670)
T PRK10547 390 LTHLVRNSLDHGIELPEKRLAAG--K----NSVGNLILSAEHQGGNICIEVTDDGAGLNRERILA 448 (670)
T ss_pred HHHHHHHHHHhhccchhhHHhcC--C----CCCCceEEEEEEcCCEEEEEEEeCCCCCCHHHHHH
Confidence 5689999999852 111110 0 11233444443333445689999999999998764
No 72
>PRK09835 sensor kinase CusS; Provisional
Probab=94.23 E-value=0.075 Score=60.72 Aligned_cols=52 Identities=15% Similarity=0.207 Sum_probs=35.5
Q ss_pred HHHHHhHhhHhhHHHhhhhhhccCCCCCCCCCCceEEEEECCCCcEEEEEeCCCCCCHHHHHHHHh
Q 003827 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLG 171 (793)
Q Consensus 106 vflRELIsNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~eeL~~~L~ 171 (793)
.++..||.||+.+.. ....+.|++..+.+.-.|.|.|||.||+.+++..-+.
T Consensus 378 ~vl~nll~Na~~~~~--------------~~~~I~i~~~~~~~~~~i~v~d~G~gi~~~~~~~if~ 429 (482)
T PRK09835 378 RAISNLLSNALRYTP--------------AGEAITVRCQEVDHQVQLVVENPGTPIAPEHLPRLFD 429 (482)
T ss_pred HHHHHHHHHHHhcCC--------------CCCeEEEEEEEeCCEEEEEEEECCCCcCHHHHHHHhC
Confidence 456777777777631 1233555555554456799999999999999876553
No 73
>PRK03660 anti-sigma F factor; Provisional
Probab=94.03 E-value=0.26 Score=47.40 Aligned_cols=48 Identities=25% Similarity=0.313 Sum_probs=30.9
Q ss_pred hHHHHHhHhhHhhHHHhhhhhhccCCCCCCCCCCceEEEEECCCCcEEEEEeCCCCCCH
Q 003827 105 EVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTK 163 (793)
Q Consensus 105 ~vflRELIsNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~ 163 (793)
..++.|++.||+... +. . .....+.|++....+.-.|+|.|+|.||+.
T Consensus 41 ~~~l~eli~Nai~h~----~~---~----~~~~~i~i~~~~~~~~l~i~I~D~G~g~~~ 88 (146)
T PRK03660 41 KTAVSEAVTNAIIHG----YE---N----NPDGVVYIEVEIEEEELEITVRDEGKGIED 88 (146)
T ss_pred HHHHHHHHHHHHHHh----cC---C----CCCCEEEEEEEECCCEEEEEEEEccCCCCh
Confidence 347899999988542 11 0 011335555555544557899999999985
No 74
>TIGR01924 rsbW_low_gc serine-protein kinase RsbW. This model describes the anti-sigma B factor also known as serine-protein kinase RsbW. Sigma B controls the general stress regulon in B subtilis and is activated by cell stresses such as stationary phase and heat shock. RsbW binds to sigma B and prevents formation of the transcription complex at the promoter. RsbV (anti-anti-sigma factor) binds to RsbW to inhibit association with sigma B, however RsbW can phosphorylate RsbV, causing disassociation of the RsbV/RsbW complex. Low ATP level or environmental stress causes the dephosphorylation of RsbV.
Probab=93.83 E-value=0.11 Score=51.66 Aligned_cols=87 Identities=18% Similarity=0.250 Sum_probs=54.3
Q ss_pred HHHHHhHhhHhhHHHhhhhhhccCCCCCCCCCCceEEEEECCCCcEEEEEeCCCCCCHHHHHHHHhhhcccCchhHHHHh
Q 003827 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKAL 185 (793)
Q Consensus 106 vflRELIsNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~eeL~~~L~tIa~Sgt~~f~~~l 185 (793)
.++.|++.||+...-. ....+.+.|.+..+.+.-.|.|+|+|.||+...+...+. ....
T Consensus 45 lav~Ea~~Nai~ha~~-----------~~~~~~I~I~~~~~~~~l~i~V~D~G~gfd~~~~~~~~~---~~~~------- 103 (159)
T TIGR01924 45 IAVSEACTNAVKHAYK-----------EGENGEIGISFHIYEDRLEIIVSDQGDSFDMDTFKQSLG---PYDG------- 103 (159)
T ss_pred HHHHHHHHHHHHhccC-----------CCCCCeEEEEEEEeCCEEEEEEEEcccccCchhhccccC---CCCC-------
Confidence 4899999999988521 011244566666665556788999999998776653221 1100
Q ss_pred hhcccCCCCCccccccccccceecccccEEEEEE
Q 003827 186 KENNDLGADNGLIGQFGVGFYSAFLVAQKVVVST 219 (793)
Q Consensus 186 ~~~~~~~~d~~~IGqFGIGf~S~F~VadkV~V~T 219 (793)
......-..-|.|++-+=.++|.+.+.+
T Consensus 104 ------~~~~~~~~~~G~GL~Li~~L~D~v~~~~ 131 (159)
T TIGR01924 104 ------SEPIDDLREGGLGLFLIETLMDEVEVYE 131 (159)
T ss_pred ------CCCcccCCCCccCHHHHHHhccEEEEEe
Confidence 0011111234888888888899988865
No 75
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]
Probab=93.68 E-value=0.12 Score=60.02 Aligned_cols=73 Identities=26% Similarity=0.316 Sum_probs=47.4
Q ss_pred HHHHHhHhhHhhHHHhhhhhhccCCCCCCCCCCceEEEEECC--CCcEEEEEeCCCCCCHHHHHHHHhhhcccCchhHHH
Q 003827 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDP--ENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLK 183 (793)
Q Consensus 106 vflRELIsNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~--~~~~l~I~DnGiGMt~eeL~~~L~tIa~Sgt~~f~~ 183 (793)
+.|.=||.||.||..+ ..+.-.|.+.+.. +.-.|.|.|||+||+++.....+ ..|.|.+
T Consensus 430 tIlGNLidNA~eA~~~-------------~~~~k~I~l~i~~~~~~lvieV~D~G~GI~~~~~~~iF-e~G~Stk----- 490 (537)
T COG3290 430 TILGNLIDNALEALLA-------------PEENKEIELSLSDRGDELVIEVADTGPGIPPEVRDKIF-EKGVSTK----- 490 (537)
T ss_pred HHHHHHHHHHHHHhhc-------------cCCCcEEEEEEEecCCEEEEEEeCCCCCCChHHHHHHH-hcCcccc-----
Confidence 3456699999999742 1122355555433 33567899999999999888544 4455521
Q ss_pred HhhhcccCCCCCccccccccccceecc
Q 003827 184 ALKENNDLGADNGLIGQFGVGFYSAFL 210 (793)
Q Consensus 184 ~l~~~~~~~~d~~~IGqFGIGf~S~F~ 210 (793)
-.|..|+|+|=+=-
T Consensus 491 -------------~~~~rGiGL~Lvkq 504 (537)
T COG3290 491 -------------NTGGRGIGLYLVKQ 504 (537)
T ss_pred -------------CCCCCchhHHHHHH
Confidence 14678999875433
No 76
>PF13581 HATPase_c_2: Histidine kinase-like ATPase domain
Probab=93.50 E-value=0.15 Score=47.76 Aligned_cols=81 Identities=21% Similarity=0.280 Sum_probs=54.5
Q ss_pred hHHHHHhHhhHhhHHHhhhhhhccCCCCCCCCCCceEEEEECCCCcEEEEEeCCCCCCHHHHHHHHhhhcccCchhHHHH
Q 003827 105 EVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKA 184 (793)
Q Consensus 105 ~vflRELIsNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~eeL~~~L~tIa~Sgt~~f~~~ 184 (793)
..++.|++.||+..... ......+.|++..+++.-.|+|.|+|.|++...+.....
T Consensus 33 ~lav~E~~~Nav~H~~~-----------~~~~~~v~v~~~~~~~~l~i~v~D~G~~~d~~~~~~~~~------------- 88 (125)
T PF13581_consen 33 ELAVSEALTNAVEHGYP-----------GDPDGPVDVRLEVDPDRLRISVRDNGPGFDPEQLPQPDP------------- 88 (125)
T ss_pred HHHHHHHHHHHHHHcCC-----------CCCCcEEEEEEEEcCCEEEEEEEECCCCCChhhccCccc-------------
Confidence 46899999999998531 001244566666777777899999999988875542110
Q ss_pred hhhcccCCCCCccccccccccceecccccEEEE
Q 003827 185 LKENNDLGADNGLIGQFGVGFYSAFLVAQKVVV 217 (793)
Q Consensus 185 l~~~~~~~~d~~~IGqFGIGf~S~F~VadkV~V 217 (793)
........-|.|++-+-.++|++.+
T Consensus 89 --------~~~~~~~~~G~Gl~li~~l~D~~~~ 113 (125)
T PF13581_consen 89 --------WEPDSLREGGRGLFLIRSLMDEVDY 113 (125)
T ss_pred --------ccCCCCCCCCcCHHHHHHHHcEEEE
Confidence 0012334557777777778899988
No 77
>PRK13557 histidine kinase; Provisional
Probab=93.32 E-value=0.18 Score=58.25 Aligned_cols=21 Identities=43% Similarity=0.608 Sum_probs=17.4
Q ss_pred cEEEEEeCCCCCCHHHHHHHH
Q 003827 150 GTITITDTGIGMTKEELVDCL 170 (793)
Q Consensus 150 ~~l~I~DnGiGMt~eeL~~~L 170 (793)
-.|+|.|||.||+.+.+..-|
T Consensus 325 ~~i~v~D~G~Gi~~~~~~~if 345 (540)
T PRK13557 325 VSIAVTDTGSGMPPEILARVM 345 (540)
T ss_pred EEEEEEcCCCCCCHHHHHhcc
Confidence 368999999999999887544
No 78
>PRK11073 glnL nitrogen regulation protein NR(II); Provisional
Probab=92.07 E-value=0.36 Score=52.73 Aligned_cols=51 Identities=27% Similarity=0.388 Sum_probs=32.9
Q ss_pred hHHHHHhHhhHhhHHHhhhhhhccCCCCCCCCCCceEEEEECC-------C-----CcEEEEEeCCCCCCHHHHHHHH
Q 003827 105 EVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDP-------E-----NGTITITDTGIGMTKEELVDCL 170 (793)
Q Consensus 105 ~vflRELIsNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~-------~-----~~~l~I~DnGiGMt~eeL~~~L 170 (793)
..++..||+||..|+.. ..+ .|.|.... + .-.|.|.|||.||+.+.+..-|
T Consensus 239 ~~vl~nLl~NA~~~~~~-------------~~~--~i~i~~~~~~~~~~~~~~~~~~~~i~v~D~G~Gi~~~~~~~iF 301 (348)
T PRK11073 239 EQVLLNIVRNALQALGP-------------EGG--TITLRTRTAFQLTLHGERYRLAARIDIEDNGPGIPPHLQDTLF 301 (348)
T ss_pred HHHHHHHHHHHHHHhcc-------------CCC--eEEEEEccccccccCCccCCceEEEEEEeCCCCCCHHHHhhcc
Confidence 34688999999999621 123 34443211 1 1258999999999998776433
No 79
>COG3920 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=91.69 E-value=0.34 Score=50.94 Aligned_cols=48 Identities=27% Similarity=0.376 Sum_probs=33.0
Q ss_pred HHHHHhHhhHhhHHHhhhhhhccCCCCCCCCCCceEEEEECCCC--cEEEEEeCCCCCCHH
Q 003827 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPEN--GTITITDTGIGMTKE 164 (793)
Q Consensus 106 vflRELIsNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~--~~l~I~DnGiGMt~e 164 (793)
.++.||++||.-... . . ...+.++|.+..+.+. ..++|+|||.|++.+
T Consensus 125 liv~EL~tNa~Khaf----~--~-----~~~G~I~I~~~~~~~~~~~~l~v~deg~G~~~~ 174 (221)
T COG3920 125 LIVHELVTNALKHAF----L--S-----RPGGEIRITLSREGDGGRFLLTVWDEGGGPPVE 174 (221)
T ss_pred HHHHHHHHHHHHhcC----C--C-----CCCCEEEEEEEEcCCCCeEEEEEEECCCCCCCC
Confidence 367899999987741 1 1 1235555666666554 589999999998753
No 80
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]
Probab=91.49 E-value=0.41 Score=56.39 Aligned_cols=54 Identities=24% Similarity=0.434 Sum_probs=39.1
Q ss_pred HHHhHhhHhhHHHhhhhhhccCCCCCCCCCCceEEEEECCCCc--EEEEEeCCCCCCHHHHHHHH
Q 003827 108 LRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENG--TITITDTGIGMTKEELVDCL 170 (793)
Q Consensus 108 lRELIsNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~--~l~I~DnGiGMt~eeL~~~L 170 (793)
+--||+||.+|++...-.. ...-.|+++.+..++ .+.|+|||.|.+.+.+.+.+
T Consensus 605 f~NliKNA~EAi~~~~~~e---------~~~~~i~~~~~~~~g~i~v~V~DNGkG~p~e~r~r~~ 660 (712)
T COG5000 605 FGNLLKNAAEAIEAVEAEE---------RRTALIRVSLDDADGRIVVDVIDNGKGFPRENRHRAL 660 (712)
T ss_pred HHHHHHhHHHHhhhccccc---------CCcceEEEEEecCCCeEEEEEecCCCCCChHHhhhhc
Confidence 3458999999998654221 111268888776554 56899999999999998766
No 81
>COG2172 RsbW Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms]
Probab=90.69 E-value=0.86 Score=44.86 Aligned_cols=86 Identities=21% Similarity=0.317 Sum_probs=55.8
Q ss_pred hHHHHHhHhhHhhHHHhhhhhhccCCCCCCCCCCceEEEEECCCCcEEEEEeCCCCCCHHHHHHHHhhhcccCchhHHHH
Q 003827 105 EVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKA 184 (793)
Q Consensus 105 ~vflRELIsNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~eeL~~~L~tIa~Sgt~~f~~~ 184 (793)
.+++-|++.||+.+.-| .+ .+.+.+.|.+..+.+.-.++|+|.|.|+. ++...++--
T Consensus 42 ~~av~E~~~N~v~Ha~~------~~----~~~g~I~i~~~~~~~~~~i~i~D~G~~~~--~~~~~~~~~----------- 98 (146)
T COG2172 42 AIAVSEALTNAVKHAYK------LD----PSEGEIRIEVSLDDGKLEIRIWDQGPGIE--DLEESLGPG----------- 98 (146)
T ss_pred HHHHHHHHHHHHHHHhh------cC----CCCceEEEEEEEcCCeEEEEEEeCCCCCC--CHHHhcCCC-----------
Confidence 67999999999998532 11 12256777777788888899999996644 444434221
Q ss_pred hhhcccCCCCCcccccc---ccccceecccccEEEEEEecCC
Q 003827 185 LKENNDLGADNGLIGQF---GVGFYSAFLVAQKVVVSTKSPR 223 (793)
Q Consensus 185 l~~~~~~~~d~~~IGqF---GIGf~S~F~VadkV~V~Tr~~~ 223 (793)
....+.- |.||+-+=.+.|+|.+.....+
T Consensus 99 ----------~~~~~~~~~~G~Gl~l~~~~~D~~~~~~~~~~ 130 (146)
T COG2172 99 ----------DTTAEGLQEGGLGLFLAKRLMDEFSYERSEDG 130 (146)
T ss_pred ----------CCCCcccccccccHHHHhhhheeEEEEeccCC
Confidence 1122333 7777766667788888755433
No 82
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional
Probab=90.21 E-value=0.31 Score=57.81 Aligned_cols=43 Identities=21% Similarity=0.421 Sum_probs=29.3
Q ss_pred HHHHhHhhHhhHHHhhhhhhccCCCCCCCCCCceEEEEECCCCcEEEEEeCCCCCCHH
Q 003827 107 FLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKE 164 (793)
Q Consensus 107 flRELIsNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~e 164 (793)
.++|+|+||..+- ..+.+.|.+..+.+.-.|+|.|||+||+.+
T Consensus 473 il~ell~NA~kha---------------~a~~i~V~~~~~~~~~~l~V~D~G~Gi~~~ 515 (569)
T PRK10600 473 IAREALSNALKHA---------------QASEVVVTVAQNQNQVKLSVQDNGCGVPEN 515 (569)
T ss_pred HHHHHHHHHHHhC---------------CCCeEEEEEEEcCCEEEEEEEECCCCCCcc
Confidence 4788888876652 123345555555445679999999999874
No 83
>PRK11644 sensory histidine kinase UhpB; Provisional
Probab=90.01 E-value=0.28 Score=57.49 Aligned_cols=43 Identities=21% Similarity=0.241 Sum_probs=29.2
Q ss_pred HHHHhHhhHhhHHHhhhhhhccCCCCCCCCCCceEEEEECCCCcEEEEEeCCCCCCHH
Q 003827 107 FLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKE 164 (793)
Q Consensus 107 flRELIsNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~e 164 (793)
.+.|++.||..+.. .+.+.|++..+.+.-.|+|+|||+||+.+
T Consensus 414 il~nlL~NAiKha~---------------~~~I~I~l~~~~~~i~l~V~DnG~Gi~~~ 456 (495)
T PRK11644 414 VCQEGLNNIVKHAD---------------ASAVTLQGWQQDERLMLVIEDDGSGLPPG 456 (495)
T ss_pred HHHHHHHHHHHhCC---------------CCEEEEEEEEcCCEEEEEEEECCCCCCcC
Confidence 56788888877631 23345555545445679999999999743
No 84
>KOG0787 consensus Dehydrogenase kinase [Signal transduction mechanisms]
Probab=89.25 E-value=1.9 Score=48.27 Aligned_cols=122 Identities=20% Similarity=0.204 Sum_probs=72.9
Q ss_pred hHHHHHhHhhHhhHHHhhhhhhccCCCCCCCCCCceEEEEECCCCcEEEEEeCCCCCCHHHHHHHHhhhcccCchhHHHH
Q 003827 105 EVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKA 184 (793)
Q Consensus 105 ~vflRELIsNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~eeL~~~L~tIa~Sgt~~f~~~ 184 (793)
.-.+-||..||..|.-+ +...... +-+++.|.|...++.-+|.|+|-|-|++..++...| .-..|.-.
T Consensus 262 ~ymlfElfKNamrATve--~h~~~~~----~~ppI~V~V~~gdeDl~ikISDrGGGV~~~~~drlf-~Y~ySTa~----- 329 (414)
T KOG0787|consen 262 YYMLFELFKNAMRATVE--HHGDDGD----ELPPIKVTVAKGDEDLLIKISDRGGGVPHRDIDRLF-SYMYSTAP----- 329 (414)
T ss_pred HHHHHHHHHHHHHHHHH--HhccCCC----CCCCeEEEEecCCcceEEEEecCCCCcChhHHHHHH-hhhcccCC-----
Confidence 45789999999999633 2211111 124566666666677899999999999999987544 33444211
Q ss_pred hhhcccCCCCCccccccccccceecccccEEEEEEecCCCCCeEEEEEccCCceEEEEccCCCCCCCCCCeEEEEEecCC
Q 003827 185 LKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADSSSYVIREETDPEKLLKRGTQITLYLKED 264 (793)
Q Consensus 185 l~~~~~~~~d~~~IGqFGIGf~S~F~VadkV~V~Tr~~~~~~~~~w~s~~~~~~~i~~~~~~~~~~~~~GT~I~L~Lk~d 264 (793)
+...+ +........||-|+.-+=++|. ..+ |...+... .+.||-+.|+||--
T Consensus 330 -~~~~d-~~~~~plaGfG~GLPisrlYa~-------yf~------------Gdl~L~Sl-------eG~GTD~yI~Lk~l 381 (414)
T KOG0787|consen 330 -APSSD-NNRTAPLAGFGFGLPISRLYAR-------YFG------------GDLKLQSL-------EGIGTDVYIYLKAL 381 (414)
T ss_pred -CCCCC-CCCcCcccccccCCcHHHHHHH-------HhC------------CCeeEEee-------eccccceEEEeccC
Confidence 11000 1113466678888765544432 112 22223322 47999999999876
Q ss_pred Cc
Q 003827 265 DK 266 (793)
Q Consensus 265 ~~ 266 (793)
..
T Consensus 382 s~ 383 (414)
T KOG0787|consen 382 SM 383 (414)
T ss_pred Cc
Confidence 55
No 85
>PRK13560 hypothetical protein; Provisional
Probab=87.87 E-value=0.56 Score=57.08 Aligned_cols=45 Identities=24% Similarity=0.361 Sum_probs=30.1
Q ss_pred HHHHhHhhHhhHHHhhhhhhccCCCCCCCCCCceEEEEECCC---CcEEEEEeCCCCCCHH
Q 003827 107 FLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPE---NGTITITDTGIGMTKE 164 (793)
Q Consensus 107 flRELIsNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~---~~~l~I~DnGiGMt~e 164 (793)
.|.+||+||+.+... +.....|.|..... .-.|+|.|||+||+.+
T Consensus 715 il~NLl~NAik~~~~-------------~~~~~~i~i~~~~~~~~~v~i~V~D~G~GI~~~ 762 (807)
T PRK13560 715 IISELLSNALKHAFP-------------DGAAGNIKVEIREQGDGMVNLCVADDGIGLPAG 762 (807)
T ss_pred HHHHHHHHHHHhhcc-------------CCCCceEEEEEEEcCCCEEEEEEEeCCCcCCcc
Confidence 678999999987421 11223455544322 3468999999999875
No 86
>COG4585 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=87.21 E-value=0.53 Score=52.62 Aligned_cols=47 Identities=15% Similarity=0.335 Sum_probs=36.5
Q ss_pred HHHHHhHhhHhhHHHhhhhhhccCCCCCCCCCCceEEEEECCCCcEEEEEeCCCCCCHHHHH
Q 003827 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELV 167 (793)
Q Consensus 106 vflRELIsNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~eeL~ 167 (793)
-+++|.|+||.-.- .+..+.|++..+.+.-.|+|.|||.|.+.+...
T Consensus 282 rivQEaltN~~rHa---------------~A~~v~V~l~~~~~~l~l~V~DnG~Gf~~~~~~ 328 (365)
T COG4585 282 RIVQEALTNAIRHA---------------QATEVRVTLERTDDELRLEVIDNGVGFDPDKEG 328 (365)
T ss_pred HHHHHHHHHHHhcc---------------CCceEEEEEEEcCCEEEEEEEECCcCCCccccC
Confidence 47899999998773 345667777777767789999999998876553
No 87
>COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms]
Probab=86.53 E-value=0.9 Score=52.93 Aligned_cols=43 Identities=26% Similarity=0.522 Sum_probs=32.7
Q ss_pred HHHHhHhhHhhHHHhhhhhhccCCCCCCCCCCceEEEEECCCCcEEEEEeCCCCCCHH
Q 003827 107 FLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKE 164 (793)
Q Consensus 107 flRELIsNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~e 164 (793)
.+||-++||.-.- .+..+.|.+....+.-+++|+|||+|++..
T Consensus 485 IvREAlsNa~KHa---------------~As~i~V~~~~~~g~~~~~VeDnG~Gi~~~ 527 (574)
T COG3850 485 IVREALSNAIKHA---------------QASEIKVTVSQNDGQVTLTVEDNGVGIDEA 527 (574)
T ss_pred HHHHHHHHHHHhc---------------ccCeEEEEEEecCCeEEEEEeeCCcCCCCc
Confidence 6899999998762 235556666666667899999999998754
No 88
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=85.00 E-value=3.4 Score=50.60 Aligned_cols=57 Identities=21% Similarity=0.292 Sum_probs=41.6
Q ss_pred HHHHHhHhhHhhHHHhhhhhhccCCCCCCCCCCceEEEEECCCCcEEEEEeCCCCCCHHHHHHHHhhhccc
Q 003827 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQS 176 (793)
Q Consensus 106 vflRELIsNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~eeL~~~L~tIa~S 176 (793)
-+|--||.||.-.- .+...++|++..+.++-.+.|+|||-|++.+++..-|-...+.
T Consensus 778 QVLiNLleNA~Kya--------------p~~s~I~I~~~~~~~~v~~~V~DeGpGIP~~~~~~IFD~F~r~ 834 (890)
T COG2205 778 QVLINLLENALKYA--------------PPGSEIRINAGVERENVVFSVIDEGPGIPEGELERIFDKFYRG 834 (890)
T ss_pred HHHHHHHHHHHhhC--------------CCCCeEEEEEEEecceEEEEEEeCCCCCChhHHHHhhhhhhcC
Confidence 35556788887652 2345567777777777889999999999999999877554443
No 89
>COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]
Probab=79.57 E-value=4.9 Score=47.90 Aligned_cols=68 Identities=18% Similarity=0.338 Sum_probs=44.2
Q ss_pred CceEEEEECC--CCcEEEEEeCCCCCCHHHHHHHHhhhcccCchhHHHHhhhcccCCCCCccccccccccceecccc---
Q 003827 138 DLEIRIKPDP--ENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVA--- 212 (793)
Q Consensus 138 ~~~I~I~~d~--~~~~l~I~DnGiGMt~eeL~~~L~tIa~Sgt~~f~~~l~~~~~~~~d~~~IGqFGIGf~S~F~Va--- 212 (793)
...|.|..+. +..++.|.|||+|++.+-+.+-|.-.-+-+ .....-| -|+|++-|-.++
T Consensus 656 ~~~i~I~~~r~ed~~t~sV~dng~Gi~~a~~~riF~iFqRl~---------------s~~~y~g-tG~GL~I~kkI~e~H 719 (750)
T COG4251 656 NPDIEISAERQEDEWTFSVRDNGIGIDPAYFERIFVIFQRLH---------------SRDEYLG-TGLGLAICKKIAERH 719 (750)
T ss_pred CCceEEeeeccCCceEEEecCCCCCcCHHHHHHHHHHHHhcC---------------chhhhcC-CCccHHHHHHHHHHh
Confidence 3567777654 357899999999999988776553221111 1223445 899998777664
Q ss_pred -cEEEEEEec
Q 003827 213 -QKVVVSTKS 221 (793)
Q Consensus 213 -dkV~V~Tr~ 221 (793)
-++.|.|+.
T Consensus 720 ~G~i~vEs~~ 729 (750)
T COG4251 720 QGRIWVESTP 729 (750)
T ss_pred CceEEEeecC
Confidence 456666653
No 90
>COG2972 Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]
Probab=78.07 E-value=3.8 Score=47.58 Aligned_cols=56 Identities=25% Similarity=0.283 Sum_probs=39.5
Q ss_pred CCCchHHHHHhHhhHhhHHHhhhhhhccCCCCCCCCCCceEEEEECCC--CcEEEEEeCCCCCCHHHHHH
Q 003827 101 YSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPE--NGTITITDTGIGMTKEELVD 168 (793)
Q Consensus 101 Ys~~~vflRELIsNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~--~~~l~I~DnGiGMt~eeL~~ 168 (793)
+-+|...|-=||.||.-|+-+.+ .+...|.|..-.. .-.+.|.|||.||++..+..
T Consensus 348 l~~p~l~lqpLvENAi~hgi~~~------------~~~~~I~i~~~~~~~~i~i~i~Dng~g~~~~~~~~ 405 (456)
T COG2972 348 LIDPKLVLQPLVENAIEHGIEPK------------RPGGSIAISAKKQDDVIQISISDNGPGIDEEKLEG 405 (456)
T ss_pred ccCchHHHhHHHHHHHHHhcccC------------CCCCEEEEEEEEcCCEEEEEEeeCCCCCChhHHHH
Confidence 45677888889999999974311 2334566654333 35678999999999987763
No 91
>KOG1845 consensus MORC family ATPases [Cell cycle control, cell division, chromosome partitioning]
Probab=77.89 E-value=1.9 Score=52.60 Aligned_cols=54 Identities=28% Similarity=0.532 Sum_probs=41.6
Q ss_pred EEeCCCCCCHHHHHHHHhhhcccCchhHHHHhhhcccCCCCCccccccccccceecc-cccEEEEEEec
Q 003827 154 ITDTGIGMTKEELVDCLGTIAQSGTSKFLKALKENNDLGADNGLIGQFGVGFYSAFL-VAQKVVVSTKS 221 (793)
Q Consensus 154 I~DnGiGMt~eeL~~~L~tIa~Sgt~~f~~~l~~~~~~~~d~~~IGqFGIGf~S~F~-VadkV~V~Tr~ 221 (793)
|.|||.||..+-+..++.....+ +.+ -..-+||.|.||...-| ++..+.|.+|.
T Consensus 192 ~s~~gg~~~~~~i~~~m~l~~~~-k~e-------------~~~tv~q~~~gfktst~rlGa~~i~~~R~ 246 (775)
T KOG1845|consen 192 ISDDGGGMKPEVIRKCMSLGYSS-KKE-------------ANSTVGQYGNGFKTSTMRLGADAIVFSRC 246 (775)
T ss_pred eeccccccCHHHHHHHHHhhhhh-hhh-------------hhhhhhhhccccccchhhhccceeEeehh
Confidence 67899999999999888654333 111 12578999999988777 88888899985
No 92
>PRK10935 nitrate/nitrite sensor protein NarQ; Provisional
Probab=77.13 E-value=2.7 Score=49.25 Aligned_cols=42 Identities=26% Similarity=0.461 Sum_probs=27.2
Q ss_pred HHHHhHhhHhhHHHhhhhhhccCCCCCCCCCCceEEEEEC-CCCcEEEEEeCCCCCCH
Q 003827 107 FLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPD-PENGTITITDTGIGMTK 163 (793)
Q Consensus 107 flRELIsNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d-~~~~~l~I~DnGiGMt~ 163 (793)
.+.+|+.||..+. ..+.+.|.+... .+.-.|.|.|||+||+.
T Consensus 475 v~~nll~NA~k~~---------------~~~~i~i~~~~~~~~~~~i~V~D~G~Gi~~ 517 (565)
T PRK10935 475 IIREATLNAIKHA---------------NASEIAVSCVTNPDGEHTVSIRDDGIGIGE 517 (565)
T ss_pred HHHHHHHHHHhcC---------------CCCeEEEEEEEcCCCEEEEEEEECCcCcCC
Confidence 5688888877652 123344554444 23356899999999984
No 93
>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=75.43 E-value=3.7 Score=45.78 Aligned_cols=54 Identities=24% Similarity=0.401 Sum_probs=36.5
Q ss_pred eEEEEECCC--CcEEEEEeCCCCCCHHHHHHHHhhhcccCchhHHHHhhhcccCCCCCccccccccccce
Q 003827 140 EIRIKPDPE--NGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKALKENNDLGADNGLIGQFGVGFYS 207 (793)
Q Consensus 140 ~I~I~~d~~--~~~l~I~DnGiGMt~eeL~~~L~tIa~Sgt~~f~~~l~~~~~~~~d~~~IGqFGIGf~S 207 (793)
+|.|.+... .-.|.|.|+|+|++++++.+-|-++-+-.+ +.....|.-|.|++-
T Consensus 363 ~Itv~~~~~~~~v~iSI~D~G~gIPk~d~~~iFdrfyRvdk--------------ARsR~~gGTGLGLaI 418 (459)
T COG5002 363 RITVSVKQRETWVEISISDQGLGIPKEDLEKIFDRFYRVDK--------------ARSRKMGGTGLGLAI 418 (459)
T ss_pred eEEEEEeeeCcEEEEEEccCCCCCCchhHHHHHHHHhhhhh--------------hhhhcCCCCchhHHH
Confidence 566655443 356899999999999999988765443211 122456788899753
No 94
>COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms]
Probab=71.88 E-value=7.2 Score=44.94 Aligned_cols=49 Identities=31% Similarity=0.223 Sum_probs=35.9
Q ss_pred HHHHhHhhHhhHHHhhhhhhccCCCCCCCCCCceEEEEECC---CCcEEEEEeCCCCCCHHHHHHHH
Q 003827 107 FLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDP---ENGTITITDTGIGMTKEELVDCL 170 (793)
Q Consensus 107 flRELIsNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~---~~~~l~I~DnGiGMt~eeL~~~L 170 (793)
++--||-||+|||.- .++.|.|..+. +.-.|-|.|||-|-..+-+.+-|
T Consensus 568 VlvNl~~NaldA~~h---------------~~p~i~~~~~~~~~e~l~i~i~DnGqGwp~~l~dkLl 619 (673)
T COG4192 568 VLVNLIVNALDASTH---------------FAPWIKLIALGTEQEMLRIAIIDNGQGWPHELVDKLL 619 (673)
T ss_pred HHHHHHHHHHhhhcc---------------CCceEEEEeecCcccceEEEEecCCCCCchhHHHHhc
Confidence 556789999999852 34678887654 34678999999999876665433
No 95
>PRK13559 hypothetical protein; Provisional
Probab=71.74 E-value=5 Score=44.19 Aligned_cols=44 Identities=27% Similarity=0.202 Sum_probs=26.6
Q ss_pred HHHHhHhhHhhHHHhhhhhhccCCCCCCCCCCceEEEEE--CCC--CcEEEEEeCCCCCCH
Q 003827 107 FLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKP--DPE--NGTITITDTGIGMTK 163 (793)
Q Consensus 107 flRELIsNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~--d~~--~~~l~I~DnGiGMt~ 163 (793)
.+.|||.||+.+.. . ......|+|.+ ... .-.|.|.|||.||+.
T Consensus 271 vl~nLi~NA~k~~~------~-------~~~~g~i~v~~~~~~~~~~~~i~v~d~G~~~~~ 318 (361)
T PRK13559 271 VLHELAVNAIKHGA------L-------SADQGRISISWKPSPEGAGFRIDWQEQGGPTPP 318 (361)
T ss_pred HHHHHHHhHHHhcc------c-------cCCCcEEEEEEEecCCCCeEEEEEECCCCCCCC
Confidence 67899999977621 0 01223455544 332 346788999998543
No 96
>KOG0355 consensus DNA topoisomerase type II [Chromatin structure and dynamics]
Probab=68.83 E-value=6.3 Score=48.21 Aligned_cols=47 Identities=26% Similarity=0.401 Sum_probs=35.6
Q ss_pred hHHHHHhHhhHhhHHHhhhhhhccCCCCCCCCCCceEEEEECCCCcEEEEEeCCCCCCHHH
Q 003827 105 EVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEE 165 (793)
Q Consensus 105 ~vflRELIsNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~ee 165 (793)
.-..-|.+-||.| . .| |+ .--.|.+.++++.+.|.|.+||-|+.-+.
T Consensus 55 ~ki~dEilvNaad-k--~r-----d~------~m~~i~v~i~~e~~~isv~nnGkGIPv~~ 101 (842)
T KOG0355|consen 55 YKIFDEILVNAAD-K--QR-----DP------KMNTIKVTIDKEKNEISVYNNGKGIPVTI 101 (842)
T ss_pred HHHHHHHhhcccc-c--cc-----CC------CcceeEEEEccCCCEEEEEeCCCcceeee
Confidence 3456789999999 3 22 22 22378888999999999999999997553
No 97
>PF01119 DNA_mis_repair: DNA mismatch repair protein, C-terminal domain; InterPro: IPR013507 This entry represents the C-terminal domain of DNA mismatch repair proteins, such as MutL. This domain functions in promoting dimerisation []. The dimeric MutL protein has a key function in communicating mismatch recognition by MutS to downstream repair processes. Mismatch repair contributes to the overall fidelity of DNA replication by targeting mispaired bases that arise through replication errors during homologous recombination and as a result of DNA damage. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex [].; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1B62_A 1NHJ_A 1BKN_B 1NHH_A 1B63_A 1NHI_A 3NA3_A 1EA6_A 1H7U_A 1H7S_B ....
Probab=60.15 E-value=15 Score=34.53 Aligned_cols=91 Identities=15% Similarity=0.274 Sum_probs=49.2
Q ss_pred cCCCcceeeecccceeEEEEEEEeeCCCCCCccccccccccceEEEeeeeeeccCCC--------CCCCcc--c-ccccc
Q 003827 366 FLDPLAYTHFTTEGEVEFRSVLYIPGMGPLNNEEIMNPKTKNIRLYVKRVFISDDFD--------GELFPR--Y-LSFVK 434 (793)
Q Consensus 366 ~~~pl~~~h~~~eg~~~~~~ll~iP~~~p~~~~~~~~~~~~~i~LYv~rVfI~D~~~--------~~LlP~--w-l~Fvr 434 (793)
+.+.|..+....+ ++.++|++.-|.. .++.+..+.+|||+++|.+..- .+.+|. | ..++.
T Consensus 9 ~~~~l~~i~~~~~-~~~i~G~is~p~~--------~~~~~~~q~ifVN~R~V~~~~l~~~I~~~y~~~~~~~~~P~~vL~ 79 (119)
T PF01119_consen 9 FASNLIEIDSEDE-DFSIEGYISKPDV--------SRSSRDRQFIFVNGRPVENKALSKAINEAYRERLPKGRYPIFVLF 79 (119)
T ss_dssp HHCCEEEEEEEEC-CEEEEEEEE-SSC--------SBSSCTCEEEEETTEEE--HHHHHHHHHHHHCTTCTTSB-EEEEE
T ss_pred HHhccEEEeccCC-CEEEEEEEECchh--------ccCCCCcEEEEeCCCeEeChHHHHHHHHHHhhcccCCCCceEEEE
Confidence 3466766664444 4899998887753 2445789999999999987630 024443 1 22233
Q ss_pred eeecCCCCCCccc---HHhh--hccHHHHHHHHHHH
Q 003827 435 GVVDSDDLPLNVS---REIL--QESRIVRIMRKRLV 465 (793)
Q Consensus 435 GVVDS~DLpLNvS---RE~L--Q~~~~l~~Irk~l~ 465 (793)
=-++.+.+-.||. ||.. .+..++..|++.|.
T Consensus 80 i~~p~~~vDVNvhP~K~eV~f~~e~~i~~~i~~~i~ 115 (119)
T PF01119_consen 80 IEIPPSEVDVNVHPAKREVRFRDEDEILNLIEEAIR 115 (119)
T ss_dssp EE-SGGGEEETSSTTTT-EEETTHHHHHHHHHHHHH
T ss_pred EEcchHHccccccccceEEEecCHHHHHHHHHHHHH
Confidence 3345555555554 4433 33345555554443
No 98
>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]
Probab=54.81 E-value=21 Score=44.06 Aligned_cols=128 Identities=23% Similarity=0.203 Sum_probs=68.4
Q ss_pred HHHhHhhHhhHHH----hhhhhhccCCCCCCCCCCceEEEEECCC-C-cEEEEEeCCCCCCHHHHHHHHhhhcccCchhH
Q 003827 108 LRELVSNASDALD----KLRFLSVTEPSLLGDAGDLEIRIKPDPE-N-GTITITDTGIGMTKEELVDCLGTIAQSGTSKF 181 (793)
Q Consensus 108 lRELIsNA~DA~~----k~r~~~~~~~~~~~~~~~~~I~I~~d~~-~-~~l~I~DnGiGMt~eeL~~~L~tIa~Sgt~~f 181 (793)
|-=||-||+|..- .||-. +......|.+..-.. + -.|+|+|+|-|++++-+...-..-|--. .+=
T Consensus 437 L~HLvRNAvDHGIE~pE~R~a~--------GKp~~G~I~L~A~~~gn~ivIev~DDG~Gid~ekI~~KAiErGli~-~~~ 507 (716)
T COG0643 437 LTHLVRNAVDHGIETPEERRAA--------GKPEEGTITLSAYHEGNNIVIEVSDDGAGIDREKIREKAIERGLIT-EEE 507 (716)
T ss_pred HHHHHhcchhccCCCHHHHHHc--------CCCCcceEEEEEEcCCCeEEEEEeeCCCCCCHHHHHHHHHHcCCCC-hHH
Confidence 4568889999852 22211 223456788876544 3 3578999999999998876432111110 000
Q ss_pred HHHhhhcccCCCCCccccccccccceecccccEEEEEEecC-CCCC-eEEEEEccCCceEEEEccCCCCCCCCCCeEEEE
Q 003827 182 LKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSP-RSDK-QYVWEAEADSSSYVIREETDPEKLLKRGTQITL 259 (793)
Q Consensus 182 ~~~l~~~~~~~~d~~~IGqFGIGf~S~F~VadkV~V~Tr~~-~~~~-~~~w~s~~~~~~~i~~~~~~~~~~~~~GT~I~L 259 (793)
.+.+. +. =-+..=|.+.|.=+++|+=.|.+. |-|- .-..+.- +|...|.. ..++||+++|
T Consensus 508 a~~lS-------d~---Ei~~LIF~PGFSTa~~VtdvSGRGVGMDVVk~~I~~L-gG~I~V~S-------~~G~GT~Fti 569 (716)
T COG0643 508 AETLS-------DE---EILNLIFAPGFSTAEQVTDVSGRGVGMDVVKTNIEQL-GGSISVSS-------EPGKGTTFTI 569 (716)
T ss_pred hccCC-------HH---HHHHHHhcCCCCcchhhhcccCCccCHHHHHHHHHHc-CCEEEEEe-------cCCCCeEEEE
Confidence 00011 00 012233667778788887666441 1010 0011112 34555554 3589999999
Q ss_pred Eec
Q 003827 260 YLK 262 (793)
Q Consensus 260 ~Lk 262 (793)
+|-
T Consensus 570 ~LP 572 (716)
T COG0643 570 RLP 572 (716)
T ss_pred ecC
Confidence 974
No 99
>cd03482 MutL_Trans_MutL MutL_Trans_MutL: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to Escherichia coli MutL. EcMutL belongs to the DNA mismatch repair (MutL/MLH1/PMS2) family. This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from the ATP-binding site to the DNA breakage/reunion regions of the enzymes. It has been suggested that during initiation of DNA mismatch repair in E. coli, the mismatch recognition protein MutS recruits MutL in the presence of ATP. The MutS(ATP)-MutL ternary complex formed, then recruits the latent endonuclease MutH. Prokaryotic MutS and MutL are homodimers.
Probab=54.67 E-value=19 Score=34.18 Aligned_cols=71 Identities=11% Similarity=0.195 Sum_probs=43.8
Q ss_pred CCCcceeeecccceeEEEEEEEeeCCCCCCccccccccccceEEEeeeeeeccCC---------CCCCCcc---cccccc
Q 003827 367 LDPLAYTHFTTEGEVEFRSVLYIPGMGPLNNEEIMNPKTKNIRLYVKRVFISDDF---------DGELFPR---YLSFVK 434 (793)
Q Consensus 367 ~~pl~~~h~~~eg~~~~~~ll~iP~~~p~~~~~~~~~~~~~i~LYv~rVfI~D~~---------~~~LlP~---wl~Fvr 434 (793)
.+.|..+... .+.+.++|++.-|... ++.++.+.+|||+++|.+.. . .++|. ...|+.
T Consensus 14 ~~~li~i~~~-~~~~~i~G~is~p~~~--------r~~~~~q~ifVN~R~V~~~~l~~ai~~~y~-~~~~~~~~P~~vL~ 83 (123)
T cd03482 14 AEQALAIDEE-AGGLRLSGWIALPTFA--------RSQADIQYFYVNGRMVRDKLISHAVRQAYS-DVLHGGRHPAYVLY 83 (123)
T ss_pred HhccceEecc-CCCEEEEEEEeCchhc--------cCCCCcEEEEEcCcEECChHHHHHHHHHHH-HhccCCCCcEEEEE
Confidence 3455545433 3458999988777642 34568899999999997653 2 34443 133444
Q ss_pred eeecCCCCCCccc
Q 003827 435 GVVDSDDLPLNVS 447 (793)
Q Consensus 435 GVVDS~DLpLNvS 447 (793)
--||.+.+-.||.
T Consensus 84 l~ipp~~vDvNVh 96 (123)
T cd03482 84 LELDPAQVDVNVH 96 (123)
T ss_pred EEcChHheeeccC
Confidence 4556666666663
No 100
>cd03486 MutL_Trans_MLH3 MutL_Trans_MLH3: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to yeast and human MLH3 (MutL homologue 3). MLH3 belongs to the DNA mismatch repair (MutL/MLH1/PMS2) family. This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. MLH1 forms heterodimers with MLH3. The MLH1-MLH3 complex plays a role in meiosis. A role for hMLH1-hMLH3 in DNA mismatch repair (MMR) has not been established. It has been suggested that hMLH3 may be a low risk gene for colorectal cancer; however there is little evidence to support it having a role in classical HNPCC.
Probab=53.88 E-value=24 Score=34.37 Aligned_cols=54 Identities=13% Similarity=0.125 Sum_probs=35.6
Q ss_pred HHHHHHHhc-ccCCCcceeeecccceeEEEEEEEeeCCCCCCccccccccccceEEEeeeeeeccC
Q 003827 356 HEFYKKTFN-EFLDPLAYTHFTTEGEVEFRSVLYIPGMGPLNNEEIMNPKTKNIRLYVKRVFISDD 420 (793)
Q Consensus 356 ~~fyk~~~~-~~~~pl~~~h~~~eg~~~~~~ll~iP~~~p~~~~~~~~~~~~~i~LYv~rVfI~D~ 420 (793)
.+....+++ ...+.|..++...+ .+.++|++.-|.. ..+..+.+|||+++|.+.
T Consensus 3 ~~~i~~i~G~~~~~~l~~v~~~~~-~~~v~G~is~p~~----------~sk~~q~ifVN~R~v~~~ 57 (141)
T cd03486 3 LSVFKQIYGLVLAQKLKEVSAKFQ-EYEVSGYISSEGH----------YSKSFQFIYVNGRLYLKT 57 (141)
T ss_pred HHHHHHHhChhhhccEEEeecccC-cEEEEEEEcCCCC----------CCCceEEEEECCEEechH
Confidence 344555553 34455666655544 4899998877763 135788999999999753
No 101
>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms]
Probab=50.19 E-value=20 Score=40.31 Aligned_cols=27 Identities=26% Similarity=0.415 Sum_probs=20.7
Q ss_pred CCCceEEEEECCCCcEEEEEeCCCCCC
Q 003827 136 AGDLEIRIKPDPENGTITITDTGIGMT 162 (793)
Q Consensus 136 ~~~~~I~I~~d~~~~~l~I~DnGiGMt 162 (793)
+..+.|.+..+.+.-.+.|.|||+|++
T Consensus 428 AS~V~i~l~~~~e~l~Lei~DdG~Gl~ 454 (497)
T COG3851 428 ASAVTIQLWQQDERLMLEIEDDGSGLP 454 (497)
T ss_pred cceEEEEEeeCCcEEEEEEecCCcCCC
Confidence 456677777766667899999999975
No 102
>COG2865 Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen [Transcription]
Probab=46.23 E-value=55 Score=38.36 Aligned_cols=101 Identities=29% Similarity=0.387 Sum_probs=60.9
Q ss_pred ccchhhHHHHHHHHHHcc--------------CCCchHHHHHhHhhHhhHHHhhhhhhccCCCCCCCCCCceEEEEECCC
Q 003827 83 FEYQAEVSRLMDLIVHSL--------------YSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPE 148 (793)
Q Consensus 83 ~~Fq~e~~~Ll~ll~~~L--------------Ys~~~vflRELIsNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~ 148 (793)
+-+++ .++++.|-.++ +.-|..+|||+|.||+=.-+ | +. ....+.|.|.-
T Consensus 238 l~~~v--~~~i~fikrn~~~~~~v~~l~r~~v~dyP~~alREai~NAv~HRD---Y---s~-----~~~~v~I~iyd--- 301 (467)
T COG2865 238 LPEQV--ERAISFIKRNLNVPYVVEGLRRVEVWDYPLEALREAIINAVIHRD---Y---SI-----RGRNVHIEIYD--- 301 (467)
T ss_pred HHHHH--HHHHHHHHHhcCCceeecceeEeecccCCHHHHHHHHHHHHHhhc---c---cc-----CCCceEEEEEC---
Confidence 34444 36777776553 22388899999999985521 1 11 12255555543
Q ss_pred CcEEEEEeCC---CCCCHHHHHHHHhhhcccCchh-HHHHhhhcccCCCCCccccccccccceeccc
Q 003827 149 NGTITITDTG---IGMTKEELVDCLGTIAQSGTSK-FLKALKENNDLGADNGLIGQFGVGFYSAFLV 211 (793)
Q Consensus 149 ~~~l~I~DnG---iGMt~eeL~~~L~tIa~Sgt~~-f~~~l~~~~~~~~d~~~IGqFGIGf~S~F~V 211 (793)
..|.|+-.| .||+.+++.+. +|-.+. .+..+= .+..+|=+.|.|+-=+|-.
T Consensus 302 -DRieI~NPGgl~~gi~~~~l~~~-----~s~~RNp~LA~~l------~~~~liE~~GSGi~rm~~~ 356 (467)
T COG2865 302 -DRIEITNPGGLPPGITPEDLLKG-----RSKSRNPVLAKVL------RDMGLIEERGSGIRRMFDL 356 (467)
T ss_pred -CeEEEECCCCCCCCCChhHcccC-----CCcccCHHHHHHH------HHhhhHHHhCccHHHHHHH
Confidence 379999877 59999988764 332221 111111 2457889999998655554
No 103
>cd03483 MutL_Trans_MLH1 MutL_Trans_MLH1: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to yeast and human MLH1 (MutL homologue 1). This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. MLH1 forms heterodimers with PMS2, PMS1 and MLH3. These three complexes have distinct functions in meiosis. hMLH1-hPMS2 also participates in the repair of all DNA mismatch repair (MMR) substrates. Roles for hMLH1-hPMS1 or hMLH1-hMLH3 in MMR have not been established. Cells lacking hMLH1 have a strong mutator phenotype and display microsatellite instability (MSI). Mutation in hMLH1 causes predisposition to HNPCC, Muir-Torre syndrome and Turcot syndrome (HNPCC variant). Mutation in hMLH1 accounts for a large fraction of HNPCC families.
Probab=45.25 E-value=32 Score=32.90 Aligned_cols=90 Identities=11% Similarity=0.220 Sum_probs=55.9
Q ss_pred CCCcceeeeccc---ceeEEEEEEEeeCCCCCCccccccccccceEEEeeeeeeccCC---------CCCCCcc---ccc
Q 003827 367 LDPLAYTHFTTE---GEVEFRSVLYIPGMGPLNNEEIMNPKTKNIRLYVKRVFISDDF---------DGELFPR---YLS 431 (793)
Q Consensus 367 ~~pl~~~h~~~e---g~~~~~~ll~iP~~~p~~~~~~~~~~~~~i~LYv~rVfI~D~~---------~~~LlP~---wl~ 431 (793)
.+.|..+....+ +.+.++|++.-|... ..++.+.+|||+++|.+.. . +++|. ...
T Consensus 15 ~~~li~i~~~~~~~~~~~~i~G~is~p~~~---------~~~~~q~~fVNgR~V~~~~l~~aI~~~Y~-~~l~~~~~P~~ 84 (127)
T cd03483 15 ANELIEVEISDDDDDLGFKVKGLISNANYS---------KKKIIFILFINNRLVECSALRRAIENVYA-NYLPKGAHPFV 84 (127)
T ss_pred HhcceEEecccCCcCCcEEEEEEEcCchhc---------CCCceEEEEEcCCEecCHHHHHHHHHHHH-HhCcCCCccEE
Confidence 345555554442 458999988767552 2357899999999998753 2 45554 233
Q ss_pred ccceeecCCCCCCccc---HHhhhcc--HHHHHHHHHHHH
Q 003827 432 FVKGVVDSDDLPLNVS---REILQES--RIVRIMRKRLVR 466 (793)
Q Consensus 432 FvrGVVDS~DLpLNvS---RE~LQ~~--~~l~~Irk~l~~ 466 (793)
|+.=-||.+.+-.||. ||.+-.+ .++..|++.|.+
T Consensus 85 ~L~i~i~p~~vDVNVHP~K~eV~f~~e~~i~~~i~~~v~~ 124 (127)
T cd03483 85 YLSLEIPPENVDVNVHPTKREVHFLNEEEIIERIQKLVED 124 (127)
T ss_pred EEEEEeChHHeeeccCCCccEEEecCHHHHHHHHHHHHHH
Confidence 4455668888888886 5554333 455555554443
No 104
>PF04122 CW_binding_2: Putative cell wall binding repeat 2; InterPro: IPR007253 This repeat is found in multiple tandem copies in proteins including amidase enhancers [] and adhesins [].
Probab=45.09 E-value=49 Score=29.38 Aligned_cols=55 Identities=18% Similarity=0.337 Sum_probs=42.1
Q ss_pred CCCeEEEEecCCH-HHHhhChhHHHHHhcCceEEecCCCchHHHHHHHhhccCcceeec
Q 003827 537 KQNAIYYLATDSL-KSAKSAPFLEKLVQKDIEVLYLIEPIDEVAIQNLQTFNEKKFVDI 594 (793)
Q Consensus 537 ~Qk~IYY~~~~s~-~~~~~Sp~lE~~~~kG~eVL~l~dpiDE~~l~~L~e~~gkkf~~V 594 (793)
+.+.+|.+.|.+. +.+..+|+. .+.|..|||..+.+++.+...|+....+++.-|
T Consensus 24 ~~~~v~ia~g~~~~Dalsa~~~a---~~~~~PIll~~~~l~~~~~~~l~~~~~~~v~ii 79 (92)
T PF04122_consen 24 KSDKVYIASGDNFADALSASPLA---AKNNAPILLVNNSLPSSVKAFLKSLNIKKVYII 79 (92)
T ss_pred CCCEEEEEeCcchhhhhhhHHHH---HhcCCeEEEECCCCCHHHHHHHHHcCCCEEEEE
Confidence 4567999999875 444555544 457899999999999999999998876666655
No 105
>cd03484 MutL_Trans_hPMS_2_like MutL_Trans_hPMS2_like: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to human PSM2 (hPSM2). hPSM2 belongs to the DNA mismatch repair (MutL/MLH1/PMS2) family. This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. Included in this group are proteins similar to yeast PMS1. The yeast MLH1-PMS1 and the human MLH1-PMS2 heterodimers play a role in meiosis. hMLH1-hPMS2 also participates in the repair of all DNA mismatch repair (MMR) substrates. Cells lacking hPMS2 have a strong mutator phenotype and display microsatellite instability (MSI). Mutation in hPMS2 causes predisposition to HPNCC and Turcot syndrome.
Probab=43.53 E-value=39 Score=32.93 Aligned_cols=36 Identities=14% Similarity=0.192 Sum_probs=25.0
Q ss_pred ceeEEEEEEEeeCCCCCCccccccccccceEEEeeeeeeccC
Q 003827 379 GEVEFRSVLYIPGMGPLNNEEIMNPKTKNIRLYVKRVFISDD 420 (793)
Q Consensus 379 g~~~~~~ll~iP~~~p~~~~~~~~~~~~~i~LYv~rVfI~D~ 420 (793)
+.+.++|++--|... . .+..+..+.+|||+++|.+.
T Consensus 43 ~~~~i~G~is~p~~~---~---~r~~~~~q~~fVN~R~V~~~ 78 (142)
T cd03484 43 SEVKITGYISKPSHG---C---GRSSSDRQFFYINGRPVDLK 78 (142)
T ss_pred CcEEEEEEECCCccc---C---CCCCCCcEEEEECCeecCCH
Confidence 458888877666321 0 23456789999999999764
No 106
>KOG1845 consensus MORC family ATPases [Cell cycle control, cell division, chromosome partitioning]
Probab=43.05 E-value=16 Score=44.89 Aligned_cols=51 Identities=25% Similarity=0.447 Sum_probs=32.5
Q ss_pred EEEEeCCCCCCHHHHHHHHhhhcccCchhHHHHhhhcccCCCCCccccccccccceecc-cccEEEEEEec
Q 003827 152 ITITDTGIGMTKEELVDCLGTIAQSGTSKFLKALKENNDLGADNGLIGQFGVGFYSAFL-VAQKVVVSTKS 221 (793)
Q Consensus 152 l~I~DnGiGMt~eeL~~~L~tIa~Sgt~~f~~~l~~~~~~~~d~~~IGqFGIGf~S~F~-VadkV~V~Tr~ 221 (793)
+...|+|+||+.+++.....- + .....||++|=|+.|.-| ++..+.+.|+.
T Consensus 2 l~~~Ddg~Gms~d~a~~~~~f-~------------------~~~~~ig~ygnG~ksgs~r~gkd~~~~tk~ 53 (775)
T KOG1845|consen 2 LCFLDDGLGMSPDEAPKAINF-A------------------VGLYGIGDYGNGLKSGSMRIGKDFILFTKK 53 (775)
T ss_pred cccccCCCCcCchhhhhhhhh-c------------------ccccccccccCcccccccccCcccceeecc
Confidence 567899999999999875531 1 123456666666665444 55555555554
No 107
>cd00329 TopoII_MutL_Trans MutL_Trans: transducer domain, having a ribosomal S5 domain 2-like fold, conserved in the C-terminal domain of type II DNA topoisomerases (Topo II) and DNA mismatch repair (MutL/MLH1/PMS2) proteins. This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. The GyrB dimerizes in response to ATP binding, and is homologous to the N-terminal half of eukaryotic Topo II and the ATPase fragment of MutL. Type II DNA topoisomerases catalyze the ATP-dependent transport of one DNA duplex through another, in the process generating transient double strand breaks via covalent attachments to both DNA strands at the 5' positions. Included in this group are proteins similar to human MLH1 and PMS2. MLH1 forms a heterodimer with PMS2 which functions in meiosis and in DNA mismatch
Probab=41.88 E-value=57 Score=28.95 Aligned_cols=52 Identities=12% Similarity=0.188 Sum_probs=32.4
Q ss_pred HHHHHhcc-cCCCcceeeecccceeEEEEEEEeeCCCCCCccccccccccceEEEeeeeeec
Q 003827 358 FYKKTFNE-FLDPLAYTHFTTEGEVEFRSVLYIPGMGPLNNEEIMNPKTKNIRLYVKRVFIS 418 (793)
Q Consensus 358 fyk~~~~~-~~~pl~~~h~~~eg~~~~~~ll~iP~~~p~~~~~~~~~~~~~i~LYv~rVfI~ 418 (793)
+.+.+++. ..+.+..++...+ .++++|++-.|... +..+..+.+|||+++|.
T Consensus 4 ~i~~~~g~~~~~~~~~~~~~~~-~~~v~g~l~~~~~~--------~~~~~~~~~fvN~r~v~ 56 (107)
T cd00329 4 RLAEILGDKVADKLIYVEGESD-GFRVEGAISYPDSG--------RSSKDRQFSFVNGRPVR 56 (107)
T ss_pred HHHHHhCHHhHhhcEEEeccCC-CEEEEEEEeCCccC--------cccCCcEEEEEcCeEEc
Confidence 44444432 2234444554433 48888887766652 23468899999999997
No 108
>PF12588 PSDC: Phophatidylserine decarboxylase ; InterPro: IPR022237 This domain family is found in bacteria and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF02666 from PFAM. Phosphatidylserine decarboxylase (PSD) is an important enzyme in the synthesis of phosphatidylethanolamine in both prokaryotes and eukaryotes.
Probab=41.77 E-value=44 Score=32.90 Aligned_cols=58 Identities=12% Similarity=0.184 Sum_probs=45.8
Q ss_pred ChHHHHHHHhhhcCCCchHHHHHHHHHHHH----HHHhCCC-CCCCHHHHHHHHHHHHHHHcCCCCCC
Q 003827 688 HPIVKDLNAACKNAPDSTDAKRAVDLLYDT----ALISSGF-TPDSPADLGNKIYEMMAMALGGRWGR 750 (793)
Q Consensus 688 HpLIk~L~~~~~~~~~d~~~~~l~~lLyd~----ALL~sG~-~leDp~~fa~ri~~LL~~~L~~~~~~ 750 (793)
||.|+.|.+++++ ++.+..++..+|++ +-=.+.. .+.|=..|..-++.+|..|-. +..
T Consensus 2 ~p~vqefk~lIe~---dp~l~ml~~~Mf~q~~~~~~p~g~~~~i~~~~~mL~~ln~i~t~AP~--~~~ 64 (141)
T PF12588_consen 2 HPVVQEFKDLIES---DPRLYMLFTQMFDQPPYNADPTGNPPQIRDYDEMLQLLNHIMTTAPE--FSD 64 (141)
T ss_pred ChHHHHHHHHHhc---CHHHHHHHHHHHhCcccccCCCCCccccccHHHHHHHHHHHHhhCCc--ccc
Confidence 8999999999875 47899999999999 2222323 468889999999999998776 665
No 109
>cd03485 MutL_Trans_hPMS_1_like MutL_Trans_hPMS1_like: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to human PSM1 (hPSM1) and yeast MLH2. hPSM1 and yMLH2 are members of the DNA mismatch repair (MutL/MLH1/PMS2) family. This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. PMS1 forms a heterodimer with MLH1. The MLH1-PMS1 complex functions in meiosis. Loss of yMLH2 results in a small but significant decrease in spore viability and a significant increase in gene conversion frequencies. A role for hMLH1-hPMS1 in DNA mismatch repair has not been established. Mutation in hMLH1 accounts for a large fraction of Lynch syndrome (HNPCC) families, however there is no convincing evidence to support hPMS1 having a role in HNPCC predisposition.
Probab=37.89 E-value=58 Score=31.18 Aligned_cols=92 Identities=14% Similarity=0.187 Sum_probs=50.8
Q ss_pred CCCcceeeeccc-ceeEEEEEEEeeCCCCCCccccccccccceEEEeeeeeecc-CC-----C---CCCC---c--c-cc
Q 003827 367 LDPLAYTHFTTE-GEVEFRSVLYIPGMGPLNNEEIMNPKTKNIRLYVKRVFISD-DF-----D---GELF---P--R-YL 430 (793)
Q Consensus 367 ~~pl~~~h~~~e-g~~~~~~ll~iP~~~p~~~~~~~~~~~~~i~LYv~rVfI~D-~~-----~---~~Ll---P--~-wl 430 (793)
.+.|..+....+ +.+.++|++--|.... .+..+..+.+|||+++|.+ .. . ..++ | . ..
T Consensus 15 ~~~li~i~~~~~~~~~~i~G~is~p~~~~------~~~~~~~q~~fVN~R~v~~~~~l~k~i~~~y~~~~~~~~~~~~P~ 88 (132)
T cd03485 15 AANMVPVQSTDEDPQISLEGFLPKPGSDV------SKTKSDGKFISVNSRPVSLGKDIGKLLRQYYSSAYRKSSLRRYPV 88 (132)
T ss_pred HhccEEEeccCCCCcEEEEEEECCCCcCC------CcccCCcEEEEECCeecccchHHHHHHHHHHHHHhccccccCCCE
Confidence 345655555542 4588999776663310 1345688999999999987 31 0 0223 2 1 23
Q ss_pred cccceeecCCCCCCccc---HHhhh--ccHHHHHHHHHH
Q 003827 431 SFVKGVVDSDDLPLNVS---REILQ--ESRIVRIMRKRL 464 (793)
Q Consensus 431 ~FvrGVVDS~DLpLNvS---RE~LQ--~~~~l~~Irk~l 464 (793)
.|+.--+|...+-.||+ ||.+- ++.++..|++.+
T Consensus 89 ~~L~i~~~~~~vDVNVhP~K~eV~f~~e~~v~~~i~~~v 127 (132)
T cd03485 89 FFLNILCPPGLVDVNIEPDKDDVLLQNKEAVLQAVENLL 127 (132)
T ss_pred EEEEEEcCCCceeeccCCccCEEEEcChHHHHHHHHHHH
Confidence 34444456666667775 44432 334555544443
No 110
>cd00782 MutL_Trans MutL_Trans: transducer domain, having a ribosomal S5 domain 2-like fold, conserved in the C-terminal domain of DNA mismatch repair (MutL/MLH1/PMS2) family. This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. Included in this group are proteins similar to human MLH1, hPMS2, hPMS1, hMLH3 and E. coli MutL, MLH1 forms heterodimers with PMS2, PMS1 and MLH3. These three complexes have distinct functions in meiosis. hMLH1-hPMS2 also participates in the repair of all DNA mismatch repair (MMR) substrates. Roles for hMLH1-hPMS1 or hMLH1-hMLH3 in MMR have not been established. Cells lacking either hMLH1 or hPMS2 have a strong mutator phenotype and display microsatellite instability (MSI). Mutation in hMLH1 causes predisposition to HNPCC, Muir-Torre syndrome and Turcot synd
Probab=37.22 E-value=56 Score=30.48 Aligned_cols=43 Identities=12% Similarity=0.170 Sum_probs=29.6
Q ss_pred CCcceeeecccceeEEEEEEEeeCCCCCCccccccccccceEEEeeeeeecc
Q 003827 368 DPLAYTHFTTEGEVEFRSVLYIPGMGPLNNEEIMNPKTKNIRLYVKRVFISD 419 (793)
Q Consensus 368 ~pl~~~h~~~eg~~~~~~ll~iP~~~p~~~~~~~~~~~~~i~LYv~rVfI~D 419 (793)
+.|..+++... .+.++|++.-|.. .+..+..+.+|||+++|.+
T Consensus 15 ~~l~~i~~~~~-~~~i~G~is~~~~--------~~~~~~~q~~fVN~R~v~~ 57 (122)
T cd00782 15 KNLIEVELESG-DFRISGYISKPDF--------GRSSKDRQFLFVNGRPVRD 57 (122)
T ss_pred hcceEEeccCC-CEEEEEEEECchh--------hcCCCccEEEEECCeEecC
Confidence 34555554443 4888897776654 1345688999999999974
No 111
>COG4564 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=35.87 E-value=46 Score=37.21 Aligned_cols=55 Identities=20% Similarity=0.320 Sum_probs=36.3
Q ss_pred cCCCchHHHHHhHhhHhhHHHhhhhhhccCCCCCCCCCCceEEEEE--CCCCcEEEEEeCCCCCCHHHHH
Q 003827 100 LYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKP--DPENGTITITDTGIGMTKEELV 167 (793)
Q Consensus 100 LYs~~~vflRELIsNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~--d~~~~~l~I~DnGiGMt~eeL~ 167 (793)
|-+...+++.-.+|-|.--+++ .++..+|.|.+ ..+.-++.|+|||.|++-.++.
T Consensus 352 l~~e~~talyRv~QEaltNIEr-------------Ha~Atrv~ill~~~~d~vql~vrDnG~GF~~~~~~ 408 (459)
T COG4564 352 LKPEVATALYRVVQEALTNIER-------------HAGATRVTILLQQMGDMVQLMVRDNGVGFSVKEAL 408 (459)
T ss_pred CCcHHHHHHHHHHHHHHHHHHh-------------hcCCeEEEEEeccCCcceEEEEecCCCCccchhhc
Confidence 3344556666777777777654 12445666655 4456789999999999866554
No 112
>COG1578 Uncharacterized conserved protein [Function unknown]
Probab=34.69 E-value=2.3e+02 Score=30.90 Aligned_cols=57 Identities=14% Similarity=0.203 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhccCHHHHHHHH--HHHhHHhheecc--cCcccHHhhcCcc
Q 003827 456 IVRIMRKRLVRKTFDMIQDISQSENKEDYKKFW--ENFGRFLKLGCV--EDSGNHKRLAPLL 513 (793)
Q Consensus 456 ~l~~Irk~l~~k~l~~l~~la~~~d~e~y~kf~--~~fg~~lK~G~~--eD~~~~~~l~~LL 513 (793)
-.|.-.+.+.+++++.+++-. .+.++.+++-. .--|.+|=.|+. ...++.+.+.+++
T Consensus 73 e~K~r~NeiA~~vl~~vr~~~-~~~~~dl~~Avk~ai~GN~iDfgv~G~~~~~lee~~~~~~ 133 (285)
T COG1578 73 EYKRRANEIALKVLPKVRENI-EDTPEDLKTAVKLAIVGNVIDFGVLGFSPFDLEEEVEKLL 133 (285)
T ss_pred HHHHHHHHHHHHHHHHHHhcc-cCChHHHHHHHHHHHHhcceeeccccCCHhHHHHHHHHhh
Confidence 344555556666666655522 13444444322 234444444444 2333444444443
No 113
>PF06112 Herpes_capsid: Gammaherpesvirus capsid protein; InterPro: IPR009299 This family consists of several Gammaherpesvirus capsid proteins. The exact function of this family is unknown.; GO: 0019028 viral capsid
Probab=29.82 E-value=60 Score=32.07 Aligned_cols=24 Identities=29% Similarity=0.400 Sum_probs=19.0
Q ss_pred EEeCCCChHHHHHHHhhhcCCCch
Q 003827 682 LEINPDHPIVKDLNAACKNAPDST 705 (793)
Q Consensus 682 LEINp~HpLIk~L~~~~~~~~~d~ 705 (793)
=+.+|+||||++|..+...|-.++
T Consensus 16 E~d~p~~plv~~~~~L~q~Nms~~ 39 (147)
T PF06112_consen 16 EADYPNHPLVAKLQALPQNNMSDA 39 (147)
T ss_pred cccCCCCHHHHHHHhhccCCCCHH
Confidence 368999999999999877665443
No 114
>PRK06851 hypothetical protein; Provisional
Probab=28.51 E-value=5.1e+02 Score=29.60 Aligned_cols=62 Identities=10% Similarity=0.081 Sum_probs=43.1
Q ss_pred ccceeeccCCCcccCHHHHHHhcccCCCeEEEEecCC---HHHHhhChhHHHHHhcCceEEecCCCchH
Q 003827 512 LLRFYTSKSEEELISLDEYVENMGEKQNAIYYLATDS---LKSAKSAPFLEKLVQKDIEVLYLIEPIDE 577 (793)
Q Consensus 512 LLrF~Ts~~~~~~~SL~eYv~rmke~Qk~IYY~~~~s---~~~~~~Sp~lE~~~~kG~eVL~l~dpiDE 577 (793)
--+|-+..+..+.+|+-+++- ++=+.+|+++|.. +..+. .-+.+.+.++|+.|.+..-|.|-
T Consensus 190 rh~F~ga~Tp~G~~s~~~~l~---~~~~~~~~i~G~pG~GKstl~-~~i~~~a~~~G~~v~~~hC~~dP 254 (367)
T PRK06851 190 RHLFLGAITPKGAVDFVPSLT---EGVKNRYFLKGRPGTGKSTML-KKIAKAAEERGFDVEVYHCGFDP 254 (367)
T ss_pred eeeeccccCCCcHHhhHHhHh---cccceEEEEeCCCCCcHHHHH-HHHHHHHHhCCCeEEEEeCCCCC
Confidence 446667667788888777665 4557899998875 22222 34667788999999987765544
No 115
>PF04025 DUF370: Domain of unknown function (DUF370); InterPro: IPR007169 This is a bacterial family of unknown function.
Probab=23.65 E-value=1.2e+02 Score=26.63 Aligned_cols=44 Identities=18% Similarity=0.278 Sum_probs=32.6
Q ss_pred hHHHHHhHhhHhhHHHhhhhhhccCCCCCCCCCCceEEEEECCCCcEEEEEeCCC----CCCHHHHH
Q 003827 105 EVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGI----GMTKEELV 167 (793)
Q Consensus 105 ~vflRELIsNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGi----GMt~eeL~ 167 (793)
...+++|+|+|-+.. --|+.+..+..+.+.|.|+|+ +...+.|.
T Consensus 23 Sap~Krl~~~ak~~~-------------------~lIdaT~GrktrsviitdsghviLSa~~~eTi~ 70 (73)
T PF04025_consen 23 SAPIKRLIQEAKEEG-------------------KLIDATYGRKTRSVIITDSGHVILSALQPETIA 70 (73)
T ss_pred chhHHHHHHHHHHcC-------------------cEEEeeCCCceeEEEEEcCCcEEEeeCCHHHHh
Confidence 456889999988873 157777777778999999996 45555544
No 116
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=23.31 E-value=1.2e+02 Score=25.09 Aligned_cols=56 Identities=13% Similarity=0.086 Sum_probs=35.1
Q ss_pred eeeccCC-CcccCHHHHHHhcccCCCeEEEEecCCHHHHhh-ChhHHHHHhcCceEEecC
Q 003827 515 FYTSKSE-EELISLDEYVENMGEKQNAIYYLATDSLKSAKS-APFLEKLVQKDIEVLYLI 572 (793)
Q Consensus 515 F~Ts~~~-~~~~SL~eYv~rmke~Qk~IYY~~~~s~~~~~~-Sp~lE~~~~kG~eVL~l~ 572 (793)
-||..|. ++.+++++|+.+.++..=...-++.-+ .+.. -++.+..++.|+.||+-.
T Consensus 4 ~Ht~~S~~~~~~~~~~~~~~a~~~g~~~v~iTDh~--~~~~~~~~~~~~~~~gi~~i~G~ 61 (67)
T smart00481 4 VHSDYSLLDGALSPEELVKRAKELGLKAIAITDHG--NLFGAVEFYKAAKKAGIKPIIGL 61 (67)
T ss_pred cccCCccccccCCHHHHHHHHHHcCCCEEEEeeCC--cccCHHHHHHHHHHcCCeEEEEE
Confidence 4566654 567889999999876554556565544 1222 235566677788887643
No 117
>PF14501 HATPase_c_5: GHKL domain
Probab=21.44 E-value=1.4e+02 Score=26.74 Aligned_cols=17 Identities=18% Similarity=0.282 Sum_probs=12.4
Q ss_pred ccccccccceecccccE
Q 003827 198 IGQFGVGFYSAFLVAQK 214 (793)
Q Consensus 198 IGqFGIGf~S~F~Vadk 214 (793)
.+..|+|+.++-.+.++
T Consensus 63 ~~~~G~GL~~v~~i~~~ 79 (100)
T PF14501_consen 63 KKGHGIGLKNVKKILEK 79 (100)
T ss_pred CCCCCcCHHHHHHHHHH
Confidence 35789999888777443
No 118
>PF14204 Ribosomal_L18_c: Ribosomal L18 C-terminal region; PDB: 2ZKR_n 4A1E_M 4A1C_M 4A1A_M 4A17_M 3O58_E 1S1I_E 3IZS_Q 3O5H_E 3IZR_Q.
Probab=21.21 E-value=20 Score=32.87 Aligned_cols=45 Identities=22% Similarity=0.491 Sum_probs=31.8
Q ss_pred HHHHHHHHhhhhccCHHHHHHHHHHHhHHhheecccCc--ccHHhhcCccc
Q 003827 466 RKTFDMIQDISQSENKEDYKKFWENFGRFLKLGCVEDS--GNHKRLAPLLR 514 (793)
Q Consensus 466 ~k~l~~l~~la~~~d~e~y~kf~~~fg~~lK~G~~eD~--~~~~~l~~LLr 514 (793)
.-|.+++..|. ++|+++|.+ +|+.+||.|+--|. +..+++..-+|
T Consensus 11 ~HVaeYm~~L~-eed~e~yk~---qFs~yik~gi~p~~le~~y~~~h~~Ir 57 (94)
T PF14204_consen 11 GHVAEYMEELK-EEDPEKYKR---QFSKYIKKGIEPDDLEEMYKKAHAAIR 57 (94)
T ss_dssp SHCHHHHHSCS-SCSSSTCSH---HHHHHHHHHCSSSHHHHHHHHHHHCCC
T ss_pred hhHHHHHHHHH-hhCHHHHHH---HHHHHHHCCCChhHHHHHHHHHHHHHH
Confidence 44668888888 588999988 88888999987653 34444444444
Done!