Query 003827
Match_columns 793
No_of_seqs 311 out of 2066
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 05:24:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003827.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003827hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cg9_A ATP-dependent molecular 100.0 3E-169 1E-173 1468.3 46.4 653 80-745 3-677 (677)
2 2o1u_A Endoplasmin; GRP94, HSP 100.0 3E-157 1E-161 1367.5 58.8 635 79-751 21-664 (666)
3 2ioq_A Chaperone protein HTPG; 100.0 1E-151 3E-156 1317.7 48.8 613 80-741 4-623 (624)
4 1y4s_A Chaperone protein HTPG; 100.0 9E-138 3E-142 1188.2 35.3 548 80-666 4-558 (559)
5 3q6m_A Heat shock protein HSP 100.0 2E-124 5E-129 1040.3 37.9 434 339-780 3-442 (448)
6 3hjc_A Heat shock protein 83-1 100.0 7E-123 2E-127 1031.8 39.2 415 331-751 11-427 (444)
7 2cge_A ATP-dependent molecular 100.0 1E-116 3E-121 979.3 41.6 402 339-745 1-405 (405)
8 1hk7_A Heat shock protein HSP8 100.0 9.7E-91 3.3E-95 732.0 24.7 286 339-629 1-288 (288)
9 2gq0_A Chaperone protein HTPG; 100.0 8.7E-90 3E-94 729.3 22.3 290 339-650 2-295 (303)
10 3pry_A Heat shock protein HSP 100.0 3.5E-87 1.2E-91 699.5 23.8 263 337-603 1-263 (268)
11 1usu_A Heat shock protein HSP8 100.0 1.6E-86 5.3E-91 692.7 23.0 257 337-597 1-257 (260)
12 1y6z_A Heat shock protein, put 100.0 3.1E-84 1.1E-88 679.3 19.7 260 337-598 1-263 (263)
13 3peh_A Endoplasmin homolog; st 100.0 1.6E-60 5.4E-65 503.1 22.6 252 79-337 22-281 (281)
14 1qy5_A Endoplasmin; GRP94, NEC 100.0 1.1E-55 3.7E-60 467.2 19.3 254 79-337 4-269 (269)
15 3ied_A Heat shock protein; HSP 100.0 1.3E-55 4.4E-60 456.3 17.8 209 79-294 23-271 (272)
16 3nmq_A Heat shock protein HSP 100.0 1.4E-54 4.6E-59 449.6 21.9 211 79-298 15-225 (239)
17 3o0i_A HSP90AA1 protein; HSP90 100.0 6.3E-51 2.2E-55 426.1 21.3 219 79-306 36-254 (256)
18 3t0h_A Heat shock protein HSP 100.0 1.5E-49 5.2E-54 411.2 21.1 218 79-305 8-225 (228)
19 2gqp_A Endoplasmin; GRP94, HSP 100.0 2.1E-48 7.1E-53 405.6 20.4 212 80-296 9-221 (236)
20 2wer_A ATP-dependent molecular 100.0 2.2E-45 7.7E-50 379.1 22.0 214 80-301 3-216 (220)
21 1yc1_A HSP 86, heat shock prot 100.0 1.6E-45 5.3E-50 389.1 21.2 217 79-304 44-260 (264)
22 2ior_A Chaperone protein HTPG; 100.0 3.8E-41 1.3E-45 350.8 18.9 208 79-294 23-232 (235)
23 1sf8_A Chaperone protein HTPG; 100.0 9.4E-33 3.2E-37 259.9 12.9 115 617-741 11-125 (126)
24 1b63_A MUTL; DNA mismatch repa 99.9 8.9E-22 3E-26 214.8 15.9 279 98-466 19-330 (333)
25 1h7s_A PMS1 protein homolog 2; 99.8 4.4E-20 1.5E-24 203.6 12.9 166 88-285 14-194 (365)
26 3na3_A DNA mismatch repair pro 99.8 2.6E-19 9E-24 195.6 12.5 283 92-467 16-334 (348)
27 3h4l_A DNA mismatch repair pro 99.8 1.6E-19 5.4E-24 198.8 10.8 284 98-467 20-357 (367)
28 1s16_A Topoisomerase IV subuni 99.2 3.4E-10 1.2E-14 125.7 18.4 247 105-474 33-297 (390)
29 3fv5_A DNA topoisomerase 4 sub 99.2 4.7E-11 1.6E-15 121.2 9.8 158 104-294 18-190 (201)
30 1kij_A DNA gyrase subunit B; t 99.2 1.4E-10 5E-15 128.8 14.3 149 105-284 34-194 (390)
31 3cwv_A DNA gyrase, B subunit, 99.2 6.3E-10 2.2E-14 122.7 18.8 144 104-284 31-183 (369)
32 1ei1_A DNA gyrase B, GYRB; ATP 99.1 1.6E-09 5.5E-14 120.4 18.1 247 103-474 34-298 (391)
33 1mu5_A Type II DNA topoisomera 98.9 1.2E-09 4E-14 124.3 8.2 149 105-283 34-196 (471)
34 2zbk_B Type 2 DNA topoisomeras 98.9 2.5E-09 8.7E-14 123.0 8.7 150 105-284 33-196 (530)
35 4duh_A DNA gyrase subunit B; s 98.7 2.8E-08 9.5E-13 102.2 9.5 157 104-295 36-208 (220)
36 2q2e_B Type 2 DNA topoisomeras 98.7 1.6E-08 5.3E-13 118.2 8.1 160 105-294 39-212 (621)
37 1zxm_A TOPO IIA ATPase, DNA to 98.7 3.6E-08 1.2E-12 109.7 10.2 160 105-293 54-230 (400)
38 4emv_A DNA topoisomerase IV, B 98.6 4.1E-07 1.4E-11 93.8 13.1 161 105-295 42-214 (226)
39 3lnu_A Topoisomerase IV subuni 98.3 9.5E-07 3.2E-11 98.3 8.9 160 104-294 51-223 (408)
40 3ttz_A DNA gyrase subunit B; p 98.2 2.7E-06 9.2E-11 86.0 9.2 142 104-295 32-181 (198)
41 1pvg_A DNA topoisomerase II; G 97.9 2.2E-05 7.4E-10 87.8 9.5 128 106-261 67-206 (418)
42 1ysr_A Sensor-type histidine k 97.4 0.00017 5.7E-09 67.6 5.8 74 107-212 50-123 (150)
43 3jz3_A Sensor protein QSEC; he 97.4 9E-05 3.1E-09 73.5 3.7 72 106-212 120-191 (222)
44 2btz_A Pyruvate dehydrogenase 97.3 0.00039 1.3E-08 76.6 8.8 116 106-263 234-349 (394)
45 4ew8_A Sensor protein DIVL; si 97.3 0.00026 8.9E-09 72.6 6.5 51 106-170 158-208 (268)
46 1id0_A PHOQ histidine kinase; 97.2 0.00029 9.8E-09 65.9 5.6 49 106-170 47-95 (152)
47 2e0a_A Pyruvate dehydrogenase 97.2 0.00043 1.5E-08 76.4 7.9 117 106-263 233-349 (394)
48 3sl2_A Sensor histidine kinase 97.2 0.00011 3.9E-09 71.0 2.8 78 107-212 47-126 (177)
49 2q8g_A [pyruvate dehydrogenase 97.2 0.00054 1.9E-08 75.9 8.2 117 106-263 246-362 (407)
50 3d36_A Sporulation kinase B; G 97.2 0.00029 1E-08 70.7 5.4 75 106-213 126-200 (244)
51 1bxd_A ENVZ(290-450), protein 97.1 0.00023 7.9E-09 67.6 3.9 74 107-212 51-124 (161)
52 1gkz_A [3-methyl-2-oxobutanoat 97.1 0.00024 8.4E-09 78.1 4.3 61 105-171 240-300 (388)
53 1i58_A Chemotaxis protein CHEA 97.1 0.00025 8.7E-09 69.2 3.9 59 107-167 51-109 (189)
54 1y8o_A [pyruvate dehydrogenase 97.1 0.00058 2E-08 76.1 7.2 118 106-263 256-373 (419)
55 1th8_A Anti-sigma F factor; SP 97.1 0.00058 2E-08 63.9 5.8 84 106-220 42-125 (145)
56 2c2a_A Sensor histidine kinase 96.9 0.00054 1.8E-08 70.1 4.6 80 106-212 141-222 (258)
57 4gfh_A DNA topoisomerase 2; to 96.9 0.0033 1.1E-07 78.5 12.1 127 106-261 62-201 (1177)
58 1b3q_A Protein (chemotaxis pro 96.7 0.0018 6E-08 71.4 6.7 55 107-167 110-168 (379)
59 3a0y_A Sensor protein; ATP-LID 96.7 0.0016 5.6E-08 60.4 5.2 50 107-170 51-100 (152)
60 3ehg_A Sensor kinase (YOCF pro 96.1 0.0034 1.2E-07 57.5 3.6 45 107-166 44-88 (128)
61 3ehh_A Sensor kinase (YOCF pro 95.7 0.0078 2.7E-07 59.5 4.8 45 107-166 134-178 (218)
62 3zxq_A Hypoxia sensor histidin 95.5 0.0062 2.1E-07 54.9 2.8 43 107-165 43-85 (124)
63 3zxo_A Redox sensor histidine 95.4 0.0055 1.9E-07 55.6 2.3 43 107-165 47-89 (129)
64 1r62_A Nitrogen regulation pro 95.0 0.01 3.5E-07 55.3 2.9 51 107-170 52-112 (160)
65 3a0r_A Sensor protein; four he 94.2 0.023 7.9E-07 60.0 3.5 48 107-168 248-295 (349)
66 4fpp_A Phosphotransferase; fou 93.4 0.057 1.9E-06 55.3 4.5 47 107-167 150-198 (247)
67 3ke6_A Protein RV1364C/MT1410; 84.5 1.2 4.2E-05 48.9 6.6 74 105-220 299-373 (399)
68 1ixm_A SPO0B, protein (sporula 66.1 5.1 0.00017 39.7 4.5 54 109-170 111-166 (192)
69 2lnd_A De novo designed protei 36.0 78 0.0027 27.0 6.2 58 525-586 38-98 (112)
No 1
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.1e-169 Score=1468.25 Aligned_cols=653 Identities=46% Similarity=0.792 Sum_probs=572.0
Q ss_pred cccccchhhHHHHHHHHHHccCCCchHHHHHhHhhHhhHHHhhhhhhccCCCCCCCCCCceEEEEECCCCcEEEEEeCCC
Q 003827 80 GEKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGI 159 (793)
Q Consensus 80 ~e~~~Fq~e~~~Ll~ll~~~LYs~~~vflRELIsNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGi 159 (793)
.|+|.||+|+++||++|+|+||||+++|||||||||+||++|+||+++++++.+....+++|+|.+++++++|+|+|||+
T Consensus 3 ~e~~~Fqae~~~Ll~li~~sLYsnkeifLRELIsNA~DA~~k~r~~~ltd~~~~~~~~~~~I~I~~d~~~~~I~I~DnGi 82 (677)
T 2cg9_A 3 SETFEFQAEITQLMSLIINTVYSNKEIFLRELISNASDALDKIRYKSLSDPKQLETEPDLFIRITPKPEQKVLEIRDSGI 82 (677)
T ss_dssp CEEEECCCCHHHHHHHHHHSCCSCTTHHHHHHHHHHHHHHHHHHHHTSSCTTTTTTCCCCCEEEEEEGGGTEEEEEECSC
T ss_pred ccceehhhhHHHHHHHHHHhCCCCchHHHHHHhhCHHHHHHHHHHHhccChhhccCCCCcEEEEEEeCCCCEEEEEECCC
Confidence 48999999999999999999999999999999999999999999999999998888888999999998889999999999
Q ss_pred CCCHHHHHHHHhhhcccCchhHHHHhhhcccCCCCCccccccccccceecccccEEEEEEecCCCCCeEEEEEccCCceE
Q 003827 160 GMTKEELVDCLGTIAQSGTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADSSSY 239 (793)
Q Consensus 160 GMt~eeL~~~L~tIa~Sgt~~f~~~l~~~~~~~~d~~~IGqFGIGf~S~F~VadkV~V~Tr~~~~~~~~~w~s~~~~~~~ 239 (793)
|||++||.++|++||+|||+.|+++++. +.+...||||||||||+||||++|+|+||+.+ +.++.|++.+++.|+
T Consensus 83 GMt~edl~~~l~tIA~Sgt~~f~~kl~~----~~d~~~IGqFGvGFySaf~vadkV~V~Sk~~~-~~~~~W~s~g~~~~t 157 (677)
T 2cg9_A 83 GMTKAELINNLGTIAKSGTKAFMEALSA----GADVSMIGQFGVGFYSLFLVADRVQVISKSND-DEQYIWESNAGGSFT 157 (677)
T ss_dssp CCCHHHHHGGGSSSSSCTTHHHHSCCCS----SCCCCCCCCTTCTTGGGGGTEEEEEEEEECTT-SCEEEEEECSSSEEE
T ss_pred CCCHHHHHHHHHhHhccccHHHHHhhhc----ccchhhcCCCCchhHHHhhcCcEEEEEEccCC-CceEEEEEcCCceEE
Confidence 9999999999999999999999988863 35778999999999999999999999999987 679999999999999
Q ss_pred EEEccCCCCCCCCCCeEEEEEecCCCcccCCchhhHHHHHHhhcCCCccCeEecccccccccccccCCC-----------
Q 003827 240 VIREETDPEKLLKRGTQITLYLKEDDKYEFSEPTRIQGLVKNYSQFVSFPIYTWQEKSRTIEVEEEEKP----------- 308 (793)
Q Consensus 240 i~~~~~~~~~~~~~GT~I~L~Lk~d~~~e~~~~~~i~~li~~ys~fi~~pI~l~~~~~~~~~~~~~~~~----------- 308 (793)
+.++. .+...++||+|+||||+++. +|++.++|+++|++||+|++|||+++.+++.++++++++++
T Consensus 158 i~~~~--~~~~~~~GT~I~L~Lk~d~~-e~l~~~~i~~lvkkys~fi~~PI~l~~~k~~~~~~~~~e~~~~~~~~~~e~~ 234 (677)
T 2cg9_A 158 VTLDE--VNERIGRGTILRLFLKDDQL-EYLEEKRIKEVIKRHSEFVAYPIQLVVTKEVEKEVPIPEEEKKDEEKKDEEK 234 (677)
T ss_dssp EEECC--SSCCCSSEEEEEEEECTTGG-GGGCHHHHHHHHHHHSTTCSSCEEECCCCCCCCC------------------
T ss_pred EeecC--CCCCCCCCeEEEEEEcchhh-ccccHHHHHHHHHHHHhhCCCCeEEeeccccccCcCcchhhhcccccccccc
Confidence 98852 12356899999999999998 99999999999999999999999998776655554432210
Q ss_pred -C---CCCCCcc-c---ccccccccccccccceeeecCCCcccccCCCCCCHHHHHHHHHHHhcccCCCcceeeecccce
Q 003827 309 -E---EGEEQPE-G---EKKTKKTTKTEKYWDWELANETKPIWMRNPKEIEKDEYHEFYKKTFNEFLDPLAYTHFTTEGE 380 (793)
Q Consensus 309 -~---~~~~~~~-~---~~~~~~~~~~~~~~~~~~~N~~~~iW~r~~~~v~~eey~~fyk~~~~~~~~pl~~~h~~~eg~ 380 (793)
+ ++..+++ + ++++++|++++++++|+.+|+++|||+|+|++||+|+|.+|||+++++|++||+|+||++||+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~e~e~iN~~~plW~r~~~eit~eeY~~FYk~l~~d~~~pl~~~H~~veg~ 314 (677)
T 2cg9_A 235 KDEDDKKPKLEEVDEEEEKKPKTKKVKEEVQEIEELNKTKPLWTRNPSDITQEEYNAFYKSISNDWEDPLYVKHFSVEGQ 314 (677)
T ss_dssp ---------------------------CCCCCBCCCCCCCCTTSSCGGGCCTTTHHHHHHHHTTCCSCCSEEEEEEECSS
T ss_pred ccccccccccccccchhhhcccccccccccccceecccCCCCcccCcccCCHHHHHHHHHHhcCCCCCchheEEeccccc
Confidence 0 0000111 1 123556777788899999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEEeeCCCCCCccccccccccceEEEeeeeeeccCCCCCCCcccccccceeecCCCCCCcccHHhhhccHHHHHH
Q 003827 381 VEFRSVLYIPGMGPLNNEEIMNPKTKNIRLYVKRVFISDDFDGELFPRYLSFVKGVVDSDDLPLNVSREILQESRIVRIM 460 (793)
Q Consensus 381 ~~~~~ll~iP~~~p~~~~~~~~~~~~~i~LYv~rVfI~D~~~~~LlP~wl~FvrGVVDS~DLpLNvSRE~LQ~~~~l~~I 460 (793)
++|+||||||+.+||++|+ .+...++|+||||||||+|+|+ +|||+||+||||||||+|||||||||+||+|++|++|
T Consensus 315 ~~~~~lLyiP~~ap~d~~~-~~~~~~~ikLYv~rVfI~d~~~-~llP~yL~FvkGVVDS~DLpLNvSRE~LQ~~~~lk~I 392 (677)
T 2cg9_A 315 LEFRAILFIPKRAPFDLFE-SKKKKNNIKLYVRRVFITDEAE-DLIPEWLSFVKGVVDSEDLPLNLSREMLQQNKIMKVI 392 (677)
T ss_dssp SCEEEEEEECSSCCC----------CCSEEEETTEEEEECST-TTSCGGGTTCEEEEEESSCCCCBTTTBCCCHHHHHHH
T ss_pred ceEEEEEEEcCCCchhhhh-hhhccCCeEEEEeeeEeecChh-hhchHHHHHheeecccCCCCcccCHHHhccCHHHHHH
Confidence 9999999999999999986 3456799999999999999999 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhccCHHHHHHHHHHHhHHhheecccCcccHHhhcCccceeeccCCCcccCHHHHHHhcccCCCe
Q 003827 461 RKRLVRKTFDMIQDISQSENKEDYKKFWENFGRFLKLGCVEDSGNHKRLAPLLRFYTSKSEEELISLDEYVENMGEKQNA 540 (793)
Q Consensus 461 rk~l~~k~l~~l~~la~~~d~e~y~kf~~~fg~~lK~G~~eD~~~~~~l~~LLrF~Ts~~~~~~~SL~eYv~rmke~Qk~ 540 (793)
|++|++||+++|.+|| +|+++|++||++||++||+|+++|..||++|++||||+||+++++++||+||++|||++|+.
T Consensus 393 ~~~l~kkvl~~l~~la--~~~e~y~~f~~~fg~~lK~G~~eD~~nr~~l~~llrf~ss~~~~~~~sL~eYv~rmke~Q~~ 470 (677)
T 2cg9_A 393 RKNIVKKLIEAFNEIA--EDSEQFEKFYSAFSKNIKLGVHEDTQNRAALAKLLRYNSTKSVDELTSLTDYVTRMPEHQKN 470 (677)
T ss_dssp HHHHHHHHHHHHHHHH--SCSHHHHHHHHHHHHHHHHHHHHCSSSHHHHHTTCCBEESSCTTSCBCSTTHHHHSCTTCCE
T ss_pred HHHHHHHHHHHHHHHH--hCHHHHHHHHHHHhHHhhhhhccCHHHHHHHHhheEeeecCCCCceeeHHHHHHhccccCce
Confidence 9999999999999999 57899999999999999999999999999999999999999877899999999999999999
Q ss_pred EEEEecCCHHHHhhChhHHHHHhcCceEEecCCCchHHHHHHHhhccCcceeeccccccCCCCchhHhh--HhhHHHHHH
Q 003827 541 IYYLATDSLKSAKSAPFLEKLVQKDIEVLYLIEPIDEVAIQNLQTFNEKKFVDISKEDLELGDEDEVKE--RETKQEFNL 618 (793)
Q Consensus 541 IYY~~~~s~~~~~~Sp~lE~~~~kG~eVL~l~dpiDE~~l~~L~e~~gkkf~~V~k~~l~l~~~~e~~~--e~~~~e~~~ 618 (793)
|||++|+|++++++|||+|.|++||||||||++||||+||++|.+|+|++|++|+++ ++|++.+++++ ++.+++|++
T Consensus 471 IyY~t~~s~~~~~~sp~~E~~~~kg~EVl~l~~~iDe~~~~~l~e~~gk~~~~v~k~-l~l~~~e~~~~~~~~~~~~~~~ 549 (677)
T 2cg9_A 471 IYYITGESLKAVEKSPFLDALKAKNFEVLFLTDPIDEYAFTQLKEFEGKTLVDITKD-FELEETDEEKAEREKEIKEYEP 549 (677)
T ss_dssp EEEEECSCSTTTTTCGGGHHHHTTTCCEEEECSHHHHHHHGGGSCBTTBEEECSCCC-CCSCSSTTSSTTHHHHHGGGHH
T ss_pred EEEEeCCCHHHHHhCcHHHHHHhCCceEEEeCCchHHHHHHHHHHhCCceEEEeecc-cccccchhhhhhhhhhHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999 99876544332 455778999
Q ss_pred HHHHHHHHhccceeEEEEeecCCCCCeEEEeCCCCccHHHHHHHHHHhcCCCCcccccccceeEEeCCCChHHHHHHHhh
Q 003827 619 LCDWIKQQLGDKVAKVQVSKRLSSSPCVLVSGKFGWSANMERLMKAQALGDTSSLEFMRGRRILEINPDHPIVKDLNAAC 698 (793)
Q Consensus 619 L~~~lk~~L~~kV~~V~vS~RL~~sP~~lv~~e~g~s~~Merimkaq~~~d~~~~~~~~~kk~LEINp~HpLIk~L~~~~ 698 (793)
||+|||++|+++|.+|++|+||++||||||++++|||++|+|||++|++++++++++|.++++|||||+||||++|..+.
T Consensus 550 L~~~~k~~L~~~v~~V~~s~rl~~sP~~lv~~~~~~s~~merimka~~~~d~~~~~~~~~k~~LeiNp~hpli~~L~~~~ 629 (677)
T 2cg9_A 550 LTKALKEILGDQVEKVVVSYKLLDAPAAIRTGQFGWSANMERIMKAQALRDSSMSSYMSSKKTFEISPKSPIIKELKKRV 629 (677)
T ss_dssp HHHHHHHTTCSSCSCEECCSSCSSSCEEEECCTTSCCHHHHHHHTTCC-------------CEEEECTTCHHHHHHHHHH
T ss_pred HHHHHHHhcCCcceEEEEeccCCCCCEEEEeCcccccHHHHHHHHHhhccccccccccccCceEEEcCCCHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999877777777888999999999999999999876
Q ss_pred hcC-CCchHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHcC
Q 003827 699 KNA-PDSTDAKRAVDLLYDTALISSGFTPDSPADLGNKIYEMMAMALG 745 (793)
Q Consensus 699 ~~~-~~d~~~~~l~~lLyd~ALL~sG~~leDp~~fa~ri~~LL~~~L~ 745 (793)
+.+ ++++.++++|++||+||||++|++++||+.|++||++||.++||
T Consensus 630 ~~d~~~~~~~~~~~~~Lyd~All~~G~~l~dp~~f~~ri~~ll~~~l~ 677 (677)
T 2cg9_A 630 DEGGAQDKTVKDLTKLLYETALLTSGFSLDEPTSFASRINRLISLGLN 677 (677)
T ss_dssp HTCCSSCSSSSTTHHHHHHHHHHHTTCCCSSTTHHHHHHHHTSSSSCC
T ss_pred hccccCHHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHHHhcC
Confidence 654 45667999999999999999999999999999999999987764
No 2
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A
Probab=100.00 E-value=2.9e-157 Score=1367.47 Aligned_cols=635 Identities=49% Similarity=0.858 Sum_probs=541.8
Q ss_pred CcccccchhhHHHHHHHHHHccCCCchHHHHHhHhhHhhHHHhhhhhhccCCCCCCCCCCceEEEEECCCCcEEEEEeCC
Q 003827 79 SGEKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTG 158 (793)
Q Consensus 79 ~~e~~~Fq~e~~~Ll~ll~~~LYs~~~vflRELIsNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnG 158 (793)
..|++.||+|+++|+++|+++||||+++|||||||||+||++|+||+++++++.+..+.++.|+|.+++++++|+|+|||
T Consensus 21 ~~e~~~Fqaei~~Ll~li~~sLYsn~eifLRELIsNA~DA~dk~r~~~l~~~~~~~~a~~~~I~I~~d~~~~~I~I~DnG 100 (666)
T 2o1u_A 21 MSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEKNLLHVTDTG 100 (666)
T ss_dssp -------------CCSSSTTTTSSSCTTHHHHHHHHHHHHHHHHHHHTTSCTTSSSSCCCCCEEEEEETTTTEEEEEECS
T ss_pred cccceehHHhHHHHHHHHHHhccCCchHHHHHHHhhHHHHHHHHHHHhccCchhccCCCccEEEEEEeCCCCEEEEEECC
Confidence 35899999999999999999999999999999999999999999999999999888888899999999888999999999
Q ss_pred CCCCHHHHHHHHhhhcccCchhHHHHhhhcccCC-CCCccccccccccceecccccEEEEEEecCCCCCeEEEEEccCCc
Q 003827 159 IGMTKEELVDCLGTIAQSGTSKFLKALKENNDLG-ADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADSS 237 (793)
Q Consensus 159 iGMt~eeL~~~L~tIa~Sgt~~f~~~l~~~~~~~-~d~~~IGqFGIGf~S~F~VadkV~V~Tr~~~~~~~~~w~s~~~~~ 237 (793)
+|||++||.++|++||+|||+.|+++++.....+ .+...||||||||||+||||++|+|+||+.+ +.++.|++.+ |.
T Consensus 101 iGMt~edl~~~l~tIA~SGtk~f~~kl~~~~~~~~~d~~~IGqFGvGfySaf~vAdkV~V~Sr~~~-~~~~~W~s~g-g~ 178 (666)
T 2o1u_A 101 VGMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSKHNN-DTQHIWESDS-NE 178 (666)
T ss_dssp CCCCHHHHHHHTTC-------------------------------CTTGGGGGTEEEEEEEEECTT-SCCEEEEESS-SC
T ss_pred CCCCHHHHHHHHhhhcccccHHHHHHhhhcccccccchhhccCCCcHHHhHHHhcCEEEEEEeeCC-CceEEEEEeC-Ce
Confidence 9999999999999999999999999887410000 4678999999999999999999999999987 5799999998 89
Q ss_pred eEEEEccCCCCCCCCCCeEEEEEecCCCcccCCchhhHHHHHHhhcCCCccCeEecccccccccccccCCCCCCCCCccc
Q 003827 238 SYVIREETDPEKLLKRGTQITLYLKEDDKYEFSEPTRIQGLVKNYSQFVSFPIYTWQEKSRTIEVEEEEKPEEGEEQPEG 317 (793)
Q Consensus 238 ~~i~~~~~~~~~~~~~GT~I~L~Lk~d~~~e~~~~~~i~~li~~ys~fi~~pI~l~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (793)
|++.+.. .+...++||+|+|+||++.. ||++.++|+++|++||.|++|||+++.+++.+
T Consensus 179 ~ti~~~~--~~~~~~~GT~I~L~Lk~d~~-Efle~~~I~~ivkkys~fi~~PI~~~~~~~~~------------------ 237 (666)
T 2o1u_A 179 FSVIADP--RGNTLGRGTTITLVLKEEAS-DYLELDTIKNLVKKYSQFINFPIYVWSSKTGG------------------ 237 (666)
T ss_dssp CEEEECT--TCCSSSSEEEEEEEECTTTT-TSSSTTHHHHHHHHHSTTCCSCEEEEECC---------------------
T ss_pred EEEEecc--cCCCCCCCeEEEEEEccchh-hhccHHHHHHHHHHHHhhCCCceEEecccccc------------------
Confidence 9998763 22346899999999999998 99999999999999999999999997753210
Q ss_pred ccccccccccccccceeeecCCCcccccCCCCCCHHHHHHHHHHHhcccCCCcceeeecccceeEEEEEEEeeCCCCCCc
Q 003827 318 EKKTKKTTKTEKYWDWELANETKPIWMRNPKEIEKDEYHEFYKKTFNEFLDPLAYTHFTTEGEVEFRSVLYIPGMGPLNN 397 (793)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~N~~~~iW~r~~~~v~~eey~~fyk~~~~~~~~pl~~~h~~~eg~~~~~~ll~iP~~~p~~~ 397 (793)
. ++++++|+++|+++|||++++.++++|+|.+||++++++|.+||+|+|+++||+++|+|+||+|+.+||++
T Consensus 238 ---~-----~~~~~~~~~iN~~~~lw~~~~~~i~~eey~~fy~~~~~d~~~pl~~ih~~~eg~~~~~gll~iP~~~p~d~ 309 (666)
T 2o1u_A 238 ---G-----GKTVWDWELMNDIKPIWQRPSKEVEDDEYKAFYKSFSKESDDPMAYIHFTAEGEVTFKSILFVPTSAPRGL 309 (666)
T ss_dssp ------------CCEEEECSCCSCTTTSCTTTCCHHHHHHHHHHTTCTTSCCSEEEEEEECSSSCEEEEEEECSSCCC--
T ss_pred ---c-----cccccceEEEecCccccccCcccccHHHHHHHHhhhccccccCeeEEEecccCcEEEEEEEEcCCCCchhh
Confidence 0 01246899999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccccc-ccccceEEEeeeeeeccCCCCCCCcccccccceeecCCCCCCcccHHhhhccHHHHHHHHHHHHHHHHHHHhhh
Q 003827 398 EEIMN-PKTKNIRLYVKRVFISDDFDGELFPRYLSFVKGVVDSDDLPLNVSREILQESRIVRIMRKRLVRKTFDMIQDIS 476 (793)
Q Consensus 398 ~~~~~-~~~~~i~LYv~rVfI~D~~~~~LlP~wl~FvrGVVDS~DLpLNvSRE~LQ~~~~l~~Irk~l~~k~l~~l~~la 476 (793)
++... .+.++|+||||||||+|+|+ +|||+||+||||||||+|||||||||+||+|++|++||+.|++||+++|.+|+
T Consensus 310 ~~~~~~~~~~~i~LYVn~vfI~d~~~-~llP~~l~FvkGvVDs~dLplNVSRE~LQ~~~~l~~I~~~l~kkv~~~l~~l~ 388 (666)
T 2o1u_A 310 FDEYGSKKSDYIKLYVRRVFITDDFH-DMMPKYLNFVKGVVDSDDLPLNVSRETLQQHKLLKVIRKKLVRKTLDMIKKIA 388 (666)
T ss_dssp ----------CEEEEETTEEEESCCC-TTSCGGGTTCEEEEEESSSCSSSCHHHHHTCHHHHHHHHHHHHHHHHHHHHSC
T ss_pred hhhccccccCCeEEEEcCeEeeCchh-hhhHHHHHHeeeeeCHhhCCCcccchhhccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 86110 45789999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred hccCHHHHH-HHHHHHhHHhheecccCcccHHhhcCccceeeccCCCcccCHHHHHHhcccCCCeEEEEecCCHHHHhhC
Q 003827 477 QSENKEDYK-KFWENFGRFLKLGCVEDSGNHKRLAPLLRFYTSKSEEELISLDEYVENMGEKQNAIYYLATDSLKSAKSA 555 (793)
Q Consensus 477 ~~~d~e~y~-kf~~~fg~~lK~G~~eD~~~~~~l~~LLrF~Ts~~~~~~~SL~eYv~rmke~Qk~IYY~~~~s~~~~~~S 555 (793)
+ ++|+ +||++||++||+|+++|..||++|++||||+||+++++++||+||++|||++|+.|||++|+|++++++|
T Consensus 389 --~--e~y~~~f~~~f~~~lK~G~~~D~~~~~~l~~ll~f~ss~~~~~~~sL~eYv~rmke~Q~~IyY~t~~~~~~~~~s 464 (666)
T 2o1u_A 389 --D--EKYNDTFWKEFGTNIKLGVIEDHSNRTRLAKLLRFQSSHHPSDITSLDQYVERMKEKQDKIYFMAGSSRKEAESS 464 (666)
T ss_dssp --H--HHHHHTHHHHHHHHHHHHHHHCGGGHHHHHTTCCEEETTSSSCEECHHHHHHHSCTTCCEEEEEECSSHHHHHTC
T ss_pred --H--HHHHHHHHHHHHHHHhhhhccCHHHHHHHHhheEeeecCCCCceeeHHHHHHhcccccceEEEEeCCCHHHHhhC
Confidence 3 8999 9999999999999999999999999999999999777899999999999999999999999999999999
Q ss_pred hhHHHHHhcCceEEecCCCchHHHHHHHhhccCcceeeccccccCCCCchhHhh--HhhHHHHHHHHHHHHHH-hcccee
Q 003827 556 PFLEKLVQKDIEVLYLIEPIDEVAIQNLQTFNEKKFVDISKEDLELGDEDEVKE--RETKQEFNLLCDWIKQQ-LGDKVA 632 (793)
Q Consensus 556 p~lE~~~~kG~eVL~l~dpiDE~~l~~L~e~~gkkf~~V~k~~l~l~~~~e~~~--e~~~~e~~~L~~~lk~~-L~~kV~ 632 (793)
||+|.|++||||||||+|||||+||++|++|+|++|++|++++++|++.+++++ ++.+++|++||+|||++ |+++|+
T Consensus 465 p~~e~~~~kg~eVl~l~~~iDe~~~~~l~e~~gk~~~~v~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~k~~~L~~~v~ 544 (666)
T 2o1u_A 465 PFVERLLKKGYEVIYLTEPVDEYCIQALPEFDGKRFQNVAKEGVKFDESEKTKESREAIEKEFEPLLNWMKDKALKDKIE 544 (666)
T ss_dssp GGGHHHHHTTCCCEEECSTHHHHHHHTCCCBTTBEEEETTBSCCCCCCCHHHHHHHHHHHHHSHHHHHHHHHTTTTTTEE
T ss_pred cHHHHHHhCCceEEEeCCchHHHHHHHHHhcCCCceEEecccccccccchhhhhhhhhhHHhHHHHHHHHHhccCCCcee
Confidence 999999999999999999999999999999999999999999999987655443 45677999999999999 999999
Q ss_pred EEEEeecCCCCCeEEEeCCCCccHHHHHHHHHHhc--C-CCCcccccccceeEEeCCCChHHHHHHHhhhcCCCchHHHH
Q 003827 633 KVQVSKRLSSSPCVLVSGKFGWSANMERLMKAQAL--G-DTSSLEFMRGRRILEINPDHPIVKDLNAACKNAPDSTDAKR 709 (793)
Q Consensus 633 ~V~vS~RL~~sP~~lv~~e~g~s~~Merimkaq~~--~-d~~~~~~~~~kk~LEINp~HpLIk~L~~~~~~~~~d~~~~~ 709 (793)
+|++|+||++||||||++++|||++|||||+||++ + ++++.++|.++++|||||+||||++|.++.+.+++++.+++
T Consensus 545 ~V~~s~rl~~sP~~lv~~~~~~s~~m~r~~~~~~~~~~~~~~~~~~~~~k~~LeiNp~H~li~~l~~~~~~~~~~~~~~~ 624 (666)
T 2o1u_A 545 KAVVSQRLTESPCALVASQYGWSGNMERIMKAQAYQTGKDISTNYYASQKKTFEINPRHPLIKDMLRRVKEDEDDKTVSD 624 (666)
T ss_dssp EEEECSSCSSCSEEEEBCTTSCCHHHHHHHHHHHHHTSCCCCSCSSSSCCEEEEECTTSHHHHHHHHHHHHCTTCHHHHH
T ss_pred EEEEeecCCCCCeEEEecCcccCHHHHHHHHHhhhhcccCcccccccccCeeeEECCCCHHHHHHHHhhhcccchHHHHH
Confidence 99999999999999999999999999999999987 3 45555678899999999999999999988777777788999
Q ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHcCCCCCCC
Q 003827 710 AVDLLYDTALISSGFTPDSPADLGNKIYEMMAMALGGRWGRS 751 (793)
Q Consensus 710 l~~lLyd~ALL~sG~~leDp~~fa~ri~~LL~~~L~~~~~~~ 751 (793)
+|++|||||||++|++++||+.|++|+++||.++|+ ++++
T Consensus 625 ~~~~l~d~All~~G~~~~dp~~f~~r~~~ll~~~l~--~~~~ 664 (666)
T 2o1u_A 625 LAVVLFETATLRSGYLLPDTKAYGDRIERMLRLSLN--IDPD 664 (666)
T ss_dssp HHHHHHHHHHHHHTCCCSCHHHHHHHHHHHHHTTSC--C---
T ss_pred HHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhcC--CCcc
Confidence 999999999999999999999999999999999998 7754
No 3
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A
Probab=100.00 E-value=1e-151 Score=1317.74 Aligned_cols=613 Identities=40% Similarity=0.701 Sum_probs=527.5
Q ss_pred cccccchhhHHHHHHHHHHccCCCchHHHHHhHhhHhhHHHhhhhhhccCCCCCCCCCCceEEEEECCCCcEEEEEeCCC
Q 003827 80 GEKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGI 159 (793)
Q Consensus 80 ~e~~~Fq~e~~~Ll~ll~~~LYs~~~vflRELIsNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGi 159 (793)
.|++.||+|+++||++|+++||||+++|||||||||+||++|+||+++++++.+..+.+++|+|.+++++++|+|+|||+
T Consensus 4 ~e~~~Fqaei~~Ll~ll~~~lYsn~~ifLrELIsNA~DA~~k~r~~~l~~~~~~~~a~~~~I~I~~d~~~~~I~I~DnGi 83 (624)
T 2ioq_A 4 QETRGFQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDKRTLTISDNGV 83 (624)
T ss_dssp -----------CCHHHHHHHHSSCTTHHHHHHHHHHHHHHHHHHHHHHTSTTTTTTCCCCCEEEEEETTTTEEEEEECSC
T ss_pred ccceeeeecHHHHHHHHHHhcCCChHHHHHHHHHHHHHhhhhhHHhhccCcccccCCCCcEEEEEEeCCCcEEEEEECCC
Confidence 38999999999999999999999999999999999999999999999999998877888999999998889999999999
Q ss_pred CCCHHHHHHHHhhhcccCchhHHHHhhhcccCCCCCccccccccccceecccccEEEEEEecCC--CCCeEEEEEccCCc
Q 003827 160 GMTKEELVDCLGTIAQSGTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPR--SDKQYVWEAEADSS 237 (793)
Q Consensus 160 GMt~eeL~~~L~tIa~Sgt~~f~~~l~~~~~~~~d~~~IGqFGIGf~S~F~VadkV~V~Tr~~~--~~~~~~w~s~~~~~ 237 (793)
|||++||.++|++||+||++.|+++++.. ...+...||||||||||+||||++|+|+||+.+ ++.+|.|++.+++.
T Consensus 84 GMt~edl~~~l~tiA~Sg~~~f~~~l~~~--~~~~~~~iG~fGvGfyS~f~VadkV~V~Sr~~~~~~~~~~~w~s~g~~~ 161 (624)
T 2ioq_A 84 GMTRDEVIDHLGTIAKSGTKSFLESLGSD--QAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGEKPENGVFWESAGEGE 161 (624)
T ss_dssp CCCHHHHHHHHHHHCC-----------------CCTTHHHHHHHHHHHHHHHEEEEEEEEECTTSCGGGEEEEEECSSSC
T ss_pred CCCHHHHHHHHHhhcccccHHHHHHhccc--ccccccccCCCCccHHHHHhcCCeEEEEECCCCCCCCeeEEEEEeCCCe
Confidence 99999999999999999999999888631 124678999999999999999999999999987 46799999999999
Q ss_pred eEEEEccCCCCCCCCCCeEEEEEecCCCcccCCchhhHHHHHHhhcCCCccCeEecccccccccccccCCCCCCCCCccc
Q 003827 238 SYVIREETDPEKLLKRGTQITLYLKEDDKYEFSEPTRIQGLVKNYSQFVSFPIYTWQEKSRTIEVEEEEKPEEGEEQPEG 317 (793)
Q Consensus 238 ~~i~~~~~~~~~~~~~GT~I~L~Lk~d~~~e~~~~~~i~~li~~ys~fi~~pI~l~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (793)
|++.+.+ ..++||+|+|+||++.. +|++.++|+++|++||.|++|||+++.+ + . +++
T Consensus 162 ~~i~~~~-----~~~~GT~I~L~Lk~d~~-Efl~~~~i~~ivkkys~fi~~PI~~~~~---e-~--~~~----------- 218 (624)
T 2ioq_A 162 YTVADIT-----KEDRGTEITLHLREGED-EFLDDWRVRSIISKYSDHIALPVEIEKR---E-E--KDG----------- 218 (624)
T ss_dssp CEEEEEC-----CSSSEEEEEEEECTTCG-GGGCHHHHHHHHHHHHTTCSSCEEEEEE---E-E--CSS-----------
T ss_pred EEEEECC-----CCCCCeEEEEEEcchhh-hcchHHHHHHHHHHHhccCCCceEEeec---c-c--ccc-----------
Confidence 9998753 35799999999999998 9999999999999999999999999541 0 0 000
Q ss_pred ccccccccccccccceeeecCCCcccccCCCCCCHHHHHHHHHHHhcccCCCcceeeecccceeEEEEEEEeeCCCCCCc
Q 003827 318 EKKTKKTTKTEKYWDWELANETKPIWMRNPKEIEKDEYHEFYKKTFNEFLDPLAYTHFTTEGEVEFRSVLYIPGMGPLNN 397 (793)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~N~~~~iW~r~~~~v~~eey~~fyk~~~~~~~~pl~~~h~~~eg~~~~~~ll~iP~~~p~~~ 397 (793)
+ .+++|+++|+++|+|++++.++++++|.+||+.++++|.+||+|+|++++|+++|+|+||+|+.+||++
T Consensus 219 ----~------~~~~~~~in~~~~lw~~~~~~i~~e~y~~fy~~~~~d~~~~l~~ih~~~eg~~~~~gll~~P~~~p~~~ 288 (624)
T 2ioq_A 219 ----E------TVISWEKINKAQALWTRNKSEITDEEYKEFYKHIAHDFNDPLTWSHNRVEGKQEYTSLLYIPSQAPWDM 288 (624)
T ss_dssp ----C------EEEEEEECCCCSCTTTSCTTTCCHHHHHHHHHHHHTCCSCCSCCEEEEEESSSCEEEEEECCSSCCGGG
T ss_pred ----c------cccceEEEeCCccceEecCccchHHHHHHHHHhhccchhcCeEEEEecccceEEEEEEEEeCCcCccch
Confidence 0 146899999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cccccccccceEEEeeeeeeccCCCCCCCcccccccceeecCCCCCCcccHHhhhccHHHHHHHHHHHHHHHHHHHhhhh
Q 003827 398 EEIMNPKTKNIRLYVKRVFISDDFDGELFPRYLSFVKGVVDSDDLPLNVSREILQESRIVRIMRKRLVRKTFDMIQDISQ 477 (793)
Q Consensus 398 ~~~~~~~~~~i~LYv~rVfI~D~~~~~LlP~wl~FvrGVVDS~DLpLNvSRE~LQ~~~~l~~Irk~l~~k~l~~l~~la~ 477 (793)
|. +...++|+||||||||+|+|+ +|||+||+||+|||||+|||||||||+||+|+++++||+.|++||+++|.+++
T Consensus 289 ~~--r~~~~~i~lyvn~v~I~d~~~-~llP~~l~fv~gvVDs~dl~lNVSRE~LQ~~~~l~~I~~~l~kkv~~~l~~l~- 364 (624)
T 2ioq_A 289 WN--RDHKHGLKLYVQRVFIMDDAE-QFMPNYLRFVRGLIDSSDLPLNVSREILQDSTVTRNLRNALTKRVLQMLEKLA- 364 (624)
T ss_dssp SS--SSCCCCEEEEESSCEEEEEEC-SSSCTTSTTCEEEEEESSSCTTCCHHHHHHSSHHHHHHHHHHHHHHHHHHHHH-
T ss_pred hh--hcccCCeEEEECCEEeecchh-ccchhhhhhEEEEECHhhCCCccCchhhhhhHHHHHHHHHHHHHHHHHHHHHH-
Confidence 85 567899999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHHHHHHhHHhheecccCcccHHhhcCccceeeccCCC--cccCHHHHHHhcccCCCeEEEEecCCHHHHhhC
Q 003827 478 SENKEDYKKFWENFGRFLKLGCVEDSGNHKRLAPLLRFYTSKSEE--ELISLDEYVENMGEKQNAIYYLATDSLKSAKSA 555 (793)
Q Consensus 478 ~~d~e~y~kf~~~fg~~lK~G~~eD~~~~~~l~~LLrF~Ts~~~~--~~~SL~eYv~rmke~Qk~IYY~~~~s~~~~~~S 555 (793)
++||++|++||++||++||+|+++|..||++|++||||+||++++ +++||+||++|||++|+.|||++|+|++++++|
T Consensus 365 ~~d~e~y~~f~~~f~~~lK~G~~~D~~~~~~l~~ll~f~ss~~~~~~~~~sL~eY~~rmke~q~~IyY~t~~~~~~~~~s 444 (624)
T 2ioq_A 365 KDDAEKYQTFWQQFGLVLKEGPAEDFANQEAIAKLLRFASTHTDSSAQTVSLEDYVSRMKEGQEKIYYITADSYAAAKSS 444 (624)
T ss_dssp HHCHHHHHHHHHHHHHHHTTHHHHCCTTHHHHHHHCCBEETTSSCSCCCBCHHHHHTTCCTTCCSEEEEECSSHHHHHHC
T ss_pred hcCHHHHHHHHHHHhHHhhhhhccCHHHHHHHHHheEeeecCCCcCCCeeeHHHHHHhccccCceEEEEeCCCHHHHhhC
Confidence 579999999999999999999999999999999999999998664 799999999999999999999999999999999
Q ss_pred hhHHHHHhcCceEEecCCCchHHHHHHHhhccCcceeeccccccCCCCc-hhHhh--HhhHHHHHHHHHHHHHHhcccee
Q 003827 556 PFLEKLVQKDIEVLYLIEPIDEVAIQNLQTFNEKKFVDISKEDLELGDE-DEVKE--RETKQEFNLLCDWIKQQLGDKVA 632 (793)
Q Consensus 556 p~lE~~~~kG~eVL~l~dpiDE~~l~~L~e~~gkkf~~V~k~~l~l~~~-~e~~~--e~~~~e~~~L~~~lk~~L~~kV~ 632 (793)
||+|.|++||||||||++||||+||++|++|+|++|++|+++++++++. +++++ ++.+++|++||+|||++|+++|+
T Consensus 445 p~~e~~~~kg~eVl~~~~~iDe~~~~~l~~~~~k~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~k~~L~~~v~ 524 (624)
T 2ioq_A 445 PHLELLRKKGIEVLLLSDRIDEWMMNYLTEFDGKPFQSVSKVDESLEKLADEVDESAKEAEKALTPFIDRVKALLGERVK 524 (624)
T ss_dssp HHHHHHHHHTCCCEEECSSTHHHHTTTCCEETTEEEEETTSCSTTTTTCC-------HHHHHHHHHHHHHHHHHSSSSSS
T ss_pred hHHHHHHhCCceEEEecCchHHHHHHHHHhcCCceEEEeecccccccccchhhhhhhhHhHHHHHHHHHHHHHhhcCCce
Confidence 9999999999999999999999999999999999999999999998753 33222 45677999999999999999999
Q ss_pred EEEEeecCCCCCeEEEeCCCCccHHHHHHHHHHhcCCCCcccccccceeEEeCCCChHHHHHHHhhhcCCCchHHHHHHH
Q 003827 633 KVQVSKRLSSSPCVLVSGKFGWSANMERLMKAQALGDTSSLEFMRGRRILEINPDHPIVKDLNAACKNAPDSTDAKRAVD 712 (793)
Q Consensus 633 ~V~vS~RL~~sP~~lv~~e~g~s~~Merimkaq~~~d~~~~~~~~~kk~LEINp~HpLIk~L~~~~~~~~~d~~~~~l~~ 712 (793)
+|++|+||+++|||||++++|||++|+|||++|++ +++.++++|||||+||||++|.+. .+++.++++|+
T Consensus 525 ~V~~s~rl~~sP~~lv~~~~~~~~~m~r~m~~~~~------~~~~~~~~LeiN~~hpli~~L~~~----~~~~~~~~~~~ 594 (624)
T 2ioq_A 525 DVRLTHRLTDTPAIVSTDADEMSTQMAKLFAAAGQ------KVPEVKYIFELNPDHVLVKRAADT----EDEAKFSEWVE 594 (624)
T ss_dssp EEEECCCCSSCCEEEECCC---------------------------CCEEEECTTCHHHHTTTSC----CCHHHHHHHHH
T ss_pred EEEEeecCCCCcEEEEecCcCcCHHHHHHHHHhhh------cccccCceEEECCCCHHHHHHHhh----cCHHHHHHHHH
Confidence 99999999999999999999999999999999863 245678999999999999999652 34678999999
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Q 003827 713 LLYDTALISSGFTPDSPADLGNKIYEMMA 741 (793)
Q Consensus 713 lLyd~ALL~sG~~leDp~~fa~ri~~LL~ 741 (793)
+|||||||++|++++||+.|++|+++||.
T Consensus 595 ~L~d~All~~g~~l~dp~~f~~r~~~~l~ 623 (624)
T 2ioq_A 595 LLLDQALLAERGTLEDPNLFIRRMNQLLV 623 (624)
T ss_dssp HHHHHHHHHHHSCCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCccCHHHHHHHHHHHhh
Confidence 99999999999999999999999999985
No 4
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A
Probab=100.00 E-value=8.6e-138 Score=1188.16 Aligned_cols=548 Identities=42% Similarity=0.740 Sum_probs=442.2
Q ss_pred cccccchhhHHHHHHHHHHccCCCchHHHHHhHhhHhhHHHhhhhhhccCCCCCCCCCCceEEEEECCCCcEEEEEeCCC
Q 003827 80 GEKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGI 159 (793)
Q Consensus 80 ~e~~~Fq~e~~~Ll~ll~~~LYs~~~vflRELIsNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGi 159 (793)
.|++.||+|+++|+++|+|+||+||++|||||||||+||++|+||+++++++.+.++.++.|+|.+++++++|+|+|||+
T Consensus 4 ~e~~~Fqaei~~Ll~ll~~~lYsn~~ifLrELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~I~I~DnGi 83 (559)
T 1y4s_A 4 QETRGFQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDKRTLTISDNGV 83 (559)
T ss_dssp CEEEECCTTHHHHHHHHHHHTGGGTTHHHHHHHHHHHHHHHHHHHHHHHCGGGGCSCCCCCEEEEEETTTTEEEEEECSS
T ss_pred ccceeeeecHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhHhHHHhhccCchhccCCCccEEEEEEeCCCcEEEEEECCC
Confidence 48999999999999999999999999999999999999999999999999998887888999999998889999999999
Q ss_pred CCCHHHHHHHHhhhcccCchhHHHHhhhcccCCCCCccccccccccceecccccEEEEEEecCCC--CCeEEEEEccCCc
Q 003827 160 GMTKEELVDCLGTIAQSGTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRS--DKQYVWEAEADSS 237 (793)
Q Consensus 160 GMt~eeL~~~L~tIa~Sgt~~f~~~l~~~~~~~~d~~~IGqFGIGf~S~F~VadkV~V~Tr~~~~--~~~~~w~s~~~~~ 237 (793)
|||++||.++|++||+||++.|+++++.. ...+...||||||||||+||||++|+|+||+.+. +.++.|++.+++.
T Consensus 84 GMt~edl~~~l~tiA~Sg~~~f~e~l~~~--~~~~~~~iG~fGvGfyS~f~VadkV~V~Sr~~~~~~~~~~~w~s~g~~~ 161 (559)
T 1y4s_A 84 GMTRDEVIDHLGTIAKSGTKSFLESLGSD--QAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGEKPENGVFWESAGEGE 161 (559)
T ss_dssp CCCHHHHHHHHSCCSCCCCCCTTCC----------CCCCSSCCCSGGGHHHHEEEEEEEEECSSSCGGGEEEEEECSSSE
T ss_pred CCCHHHHHHHHhhhcccccHHHHHHhhcc--ccccccccCCCCcchhhhhhccCeEEEEEcCCCCCCCeeEEEEEeCCCe
Confidence 99999999999999999999998777631 0236689999999999999999999999999873 6799999999999
Q ss_pred eEEEEccCCCCCCCCCCeEEEEEecCCCcccCCchhhHHHHHHhhcCCCccCeEecccccccccccccCCCCCCCCCccc
Q 003827 238 SYVIREETDPEKLLKRGTQITLYLKEDDKYEFSEPTRIQGLVKNYSQFVSFPIYTWQEKSRTIEVEEEEKPEEGEEQPEG 317 (793)
Q Consensus 238 ~~i~~~~~~~~~~~~~GT~I~L~Lk~d~~~e~~~~~~i~~li~~ys~fi~~pI~l~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (793)
|++.+.+ ..++||+|+|+|+++.. +|++.++|+++|++||.|++|||+++.+ + .+ +
T Consensus 162 ~~i~~~~-----~~~~GT~I~L~Lk~d~~-Efle~~~I~~iv~kys~fi~~PI~~~~~-----e-~~-~----------- 217 (559)
T 1y4s_A 162 YTVADIT-----KEDRGTEITLHLREGED-EFLDDWRVRSIISKYSDHIALPVEIEKR-----E-EK-D----------- 217 (559)
T ss_dssp EEEEEEC-----CCSCEEEEEEEECTTCG-GGSCHHHHHHHHHHHHTTCSSCEEEEEE-----E-CS-T-----------
T ss_pred eEEeECC-----CCCCCeEEEEEEcchhh-hcchHHHHHHHHHHHhccCCCceEEeec-----c-cc-c-----------
Confidence 9998763 35899999999999998 9999999999999999999999999541 0 00 0
Q ss_pred ccccccccccccccceeeecCCCcccccCCCCCCHHHHHHHHHHHhcccCCCcceeeecccceeEEEEEEEeeCCCCCCc
Q 003827 318 EKKTKKTTKTEKYWDWELANETKPIWMRNPKEIEKDEYHEFYKKTFNEFLDPLAYTHFTTEGEVEFRSVLYIPGMGPLNN 397 (793)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~N~~~~iW~r~~~~v~~eey~~fyk~~~~~~~~pl~~~h~~~eg~~~~~~ll~iP~~~p~~~ 397 (793)
.+ .+++|+++|+++|+|++++.++++++|.+||++++++|.+||+|+|++++|+++|+|+||+|+.+||++
T Consensus 218 ---~~------~~~~~~~in~~~~lw~~~~~~i~~e~y~~fy~~~~~d~~~~l~~ih~~~eg~~~~~gll~~P~~~p~~~ 288 (559)
T 1y4s_A 218 ---GE------TVISWEKINKAQALWTRNKSEITDEEYKEFYKHIAHDFNDPLTWSHNRVEGKQEYTSLLYIPSQAPWDM 288 (559)
T ss_dssp ---TS------CEEEEEECCCCCCGGGSCGGGCCHHHHHHHHHHHHTCSSCEEEEEEECCCSSSCEEEEEEEESSCCTTC
T ss_pred ---cc------cccceEEEeCCccceecCcccccHHHHHHHHHhhhhhhhcCeEEEEeccCCceEEEEEEEcCCcCcchh
Confidence 00 146899999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cccccccccceEEEeeeeeeccCCCCCCCcccccccceeecCCCCCCcccHHhhhccHHHHHHHHHHHHHHHHHHHhhhh
Q 003827 398 EEIMNPKTKNIRLYVKRVFISDDFDGELFPRYLSFVKGVVDSDDLPLNVSREILQESRIVRIMRKRLVRKTFDMIQDISQ 477 (793)
Q Consensus 398 ~~~~~~~~~~i~LYv~rVfI~D~~~~~LlP~wl~FvrGVVDS~DLpLNvSRE~LQ~~~~l~~Irk~l~~k~l~~l~~la~ 477 (793)
+. +...++|+||||||||+|+|+ +|||+||+||+|||||+|||||||||+||+|+++++||+.|++||+++|.+|+
T Consensus 289 ~~--r~~~~~i~lyvn~v~I~d~~~-~llP~~l~fv~gvVDs~dlplNVSRE~lq~~~~l~~I~~~l~kkv~~~l~~l~- 364 (559)
T 1y4s_A 289 WN--RDHKHGLKLYVQRVFIMDDAE-QFMPNYLRFVRGLIDSSDLPLNVSREILQDSTVTRNLRNALTKRVLQMLEKLA- 364 (559)
T ss_dssp SS--SSCCCCEEEEETTEEEEEEEG-GGSCGGGTTCEEEEEESSSCTTCCTTGGGGCHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred hh--hcccCCeEEEEcCEEeecchh-hhChHhHhheeEeeChhhCCCeeCchhhhhhHHHHHHHHHHHHHHHHHHHHHH-
Confidence 85 667899999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHHHHHHhHHhheecccCcccHHhhcCccceeeccCCC--cccCHHHHHHhcccCCCeEEEEecCCHHHHhhC
Q 003827 478 SENKEDYKKFWENFGRFLKLGCVEDSGNHKRLAPLLRFYTSKSEE--ELISLDEYVENMGEKQNAIYYLATDSLKSAKSA 555 (793)
Q Consensus 478 ~~d~e~y~kf~~~fg~~lK~G~~eD~~~~~~l~~LLrF~Ts~~~~--~~~SL~eYv~rmke~Qk~IYY~~~~s~~~~~~S 555 (793)
++||++|++||++||++||+|+++|..||++|++||||+||++++ +++||+||++|||++|+.|||++|+|++++++|
T Consensus 365 ~~d~e~y~~f~~~f~~~lK~G~~~D~~~~~~l~~ll~f~ss~~~~~~~~~sL~eY~~rmk~~q~~IyY~t~~~~~~~~~s 444 (559)
T 1y4s_A 365 KDDAEKYQTFWQQFGLVLKEGPAEDFANQEAIAKLLRFASTHTDSSAQTVSLEDYVSRMKEGQEKIYYITADSYAAAKSS 444 (559)
T ss_dssp HHCHHHHHHHHHHHHHHHTTSTTTCGGGHHHHHTTCEEBCSSCSSSSCCEETTSSSTTCCTTCSCCBEECCSSSHHHHTC
T ss_pred hcCHHHHHHHHHHHhHHhhhhhccCHHHHHHHHHhhEeeecCCCcCCCeeeHHHHHHhccccCceEEEEeCCCHHHHhhC
Confidence 579999999999999999999999999999999999999998764 799999999999999999999999999999999
Q ss_pred hhHHHHHhcCceEEecCCCchHHHHHHHhhccCcceeeccccccCCCCc-hhHhh--HhhHHHHHHHHHHHHHHhcccee
Q 003827 556 PFLEKLVQKDIEVLYLIEPIDEVAIQNLQTFNEKKFVDISKEDLELGDE-DEVKE--RETKQEFNLLCDWIKQQLGDKVA 632 (793)
Q Consensus 556 p~lE~~~~kG~eVL~l~dpiDE~~l~~L~e~~gkkf~~V~k~~l~l~~~-~e~~~--e~~~~e~~~L~~~lk~~L~~kV~ 632 (793)
||+|.|++||||||||++||||+||++|++|+|++|++|+++++++++. +++++ ++.+++|++||+|||++|+++|+
T Consensus 445 p~~e~~~~kg~eVl~~~~~iDe~~~~~l~~~~~k~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~k~~L~~~v~ 524 (559)
T 1y4s_A 445 PHLELLRKKGIEVLLLSDRIDEWMMNYLTEFDGKPFQSVSKVDESLEKLADEVDESAKEAEKALTPFIDRVKALLGERVK 524 (559)
T ss_dssp SSSHHHHHTTCCCEECCSTTHHHHHHHCCCCSSSCCBCC-----------------------------------------
T ss_pred hHHHHHHhCCceEEEecChHHHHHHHHHHHhCCceEEecccccccccccchhhhhhhhHHHHHHHHHHHHHHHHhcCCce
Confidence 9999999999999999999999999999999999999999999998654 33222 45577899999999999999999
Q ss_pred EEEEeecCCCCCeEEEeCCCCccHHHHHHHHHHh
Q 003827 633 KVQVSKRLSSSPCVLVSGKFGWSANMERLMKAQA 666 (793)
Q Consensus 633 ~V~vS~RL~~sP~~lv~~e~g~s~~Merimkaq~ 666 (793)
+|++|+||++||||||++++|||++|||||++|+
T Consensus 525 ~V~~s~rl~~sp~~~v~~~~~~~~~m~~~~~~~~ 558 (559)
T 1y4s_A 525 DVRLTHRLTDTPAIVSTDADEMSTQMAKLFAAAG 558 (559)
T ss_dssp ----------------------------------
T ss_pred EEEEeccCCCCCEEEEeCCCCcCHHHHHHHHhcC
Confidence 9999999999999999999999999999999874
No 5
>3q6m_A Heat shock protein HSP 90-alpha; three domains, trimer of dimer, hexamer, chaperone; 3.00A {Homo sapiens} PDB: 3q6n_A
Probab=100.00 E-value=1.6e-124 Score=1040.33 Aligned_cols=434 Identities=45% Similarity=0.816 Sum_probs=359.9
Q ss_pred CCcccccCCCCCCHHHHHHHHHHHhcccCCCcceeeecccceeEEEEEEEeeCCCCCCccccccccccceEEEeeeeeec
Q 003827 339 TKPIWMRNPKEIEKDEYHEFYKKTFNEFLDPLAYTHFTTEGEVEFRSVLYIPGMGPLNNEEIMNPKTKNIRLYVKRVFIS 418 (793)
Q Consensus 339 ~~~iW~r~~~~v~~eey~~fyk~~~~~~~~pl~~~h~~~eg~~~~~~ll~iP~~~p~~~~~~~~~~~~~i~LYv~rVfI~ 418 (793)
++|||+|+|++||+|+|.+|||+++++|++||+|+||++||+++|+||||||+.+||++|+ .+..+++|+||||||||+
T Consensus 3 ~~plW~r~~~eit~EeY~eFYk~l~~d~~dPL~~iH~~veg~~e~~~lLyiP~~ap~d~~~-~~~~~~~ikLYvrrVfI~ 81 (448)
T 3q6m_A 3 TKPIWTRNPDDITNEEYGEFYKSLTNDWEDHLAVKHFSVEGQLEFRALLFVPRRAPFDLFE-NRKKKNNIKLYVRRVFIM 81 (448)
T ss_dssp -CCGGGSCTTSCCHHHHHHHHHHHHCCSSCCSEEEEEEECSSSCEEEEEEECSSCCC----------CCEEEEETTEEEE
T ss_pred CCCCCCCChhhCCHHHHHHHHHHhcCCccCChheeeeccCCCeeeEEEEEccCCCchhhhh-hhhhccceeEEeeeeEEe
Confidence 5799999999999999999999999999999999999999999999999999999999986 345679999999999999
Q ss_pred cCCCCCCCcccccccceeecCCCCCCcccHHhhhccHHHHHHHHHHHHHHHHHHHhhhhccCHHHHHHHHHHHhHHhhee
Q 003827 419 DDFDGELFPRYLSFVKGVVDSDDLPLNVSREILQESRIVRIMRKRLVRKTFDMIQDISQSENKEDYKKFWENFGRFLKLG 498 (793)
Q Consensus 419 D~~~~~LlP~wl~FvrGVVDS~DLpLNvSRE~LQ~~~~l~~Irk~l~~k~l~~l~~la~~~d~e~y~kf~~~fg~~lK~G 498 (793)
|+|+ +|||+||+||||||||+|||||||||+||+|++|++||+.|++||+++|.+++ +|+++|++||++||++||+|
T Consensus 82 d~~~-ellP~yL~FvkGVVDS~DLPLNVSRE~LQ~~~~lk~Irk~i~kKvl~~L~~la--~d~e~Y~~f~~~fg~~lK~G 158 (448)
T 3q6m_A 82 DNCE-ELIPEYLNFIRGVVDSEDLPLNISREMLQQSKILKVIRKNLVKKCLELFTELA--EDKENYKKFYEQFSKNIKLG 158 (448)
T ss_dssp SCCT-TSSCGGGTTCEEEEEESCCC---------CCSHHHHHHHHHHHHHHHHHHHHT--SSHHHHHHHHHHHHHHHHHH
T ss_pred cchh-hhchhhhhheeEEeccCCCCccccHHhhccCHHHHHHHHHHHHHHHHHHHHHH--hCHHHHHHHHHHHhHHHHhh
Confidence 9999 99999999999999999999999999999999999999999999999999999 79999999999999999999
Q ss_pred cccCcccHHhhcCccceeeccCCCcccCHHHHHHhcccCCCeEEEEecCCHHHHhhChhHHHHHhcCceEEecCCCchHH
Q 003827 499 CVEDSGNHKRLAPLLRFYTSKSEEELISLDEYVENMGEKQNAIYYLATDSLKSAKSAPFLEKLVQKDIEVLYLIEPIDEV 578 (793)
Q Consensus 499 ~~eD~~~~~~l~~LLrF~Ts~~~~~~~SL~eYv~rmke~Qk~IYY~~~~s~~~~~~Sp~lE~~~~kG~eVL~l~dpiDE~ 578 (793)
+++|..||++|++||||+||+++++++||+||++|||++|+.|||++|+|++++++|||+|.|++||||||||++||||+
T Consensus 159 i~eD~~n~~~l~~LLrF~Ss~~~~~~~SL~eYv~rmke~Qk~IYYitg~s~~~~~~sp~lE~~k~kG~EVL~l~d~iDe~ 238 (448)
T 3q6m_A 159 IHEDSQNRKKLSELLRYYTSASGDEMVSLKDYCTRMKENQKHIYYITGETKDQVANSAFVERLRKHGLEVIYMIEPIDEY 238 (448)
T ss_dssp HHHCGGGHHHHHTTCEEEETTTTTSCEEHHHHHHTCCSSCCEEEEEECSCHHHHHTSGGGHHHHHHTCCEEEECSTHHHH
T ss_pred hcccHHHHHHHHHhhEeeeccCCCceEeHHHHHHhccccCceEEEEecCCHHHHHhChHHHHHHHCCCEEEEecCchHHH
Confidence 99999999999999999999987789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccCcceeeccccccCCCCchhHhh--HhhHHHHHHHHHHHHHHhccceeEEEEeecCCCCCeEEEeCCCCccH
Q 003827 579 AIQNLQTFNEKKFVDISKEDLELGDEDEVKE--RETKQEFNLLCDWIKQQLGDKVAKVQVSKRLSSSPCVLVSGKFGWSA 656 (793)
Q Consensus 579 ~l~~L~e~~gkkf~~V~k~~l~l~~~~e~~~--e~~~~e~~~L~~~lk~~L~~kV~~V~vS~RL~~sP~~lv~~e~g~s~ 656 (793)
||++|++|+||+|++|++++++|++.+++++ ++.+++|++||+|||++||++|++|++|+||++||||||++++|||+
T Consensus 239 ~i~~L~ef~gk~~~sV~k~~l~l~~~eeek~~~ee~~~~~~~L~~~~K~~L~~kV~~V~vS~RL~~sP~~lv~~e~g~s~ 318 (448)
T 3q6m_A 239 CVQQLKEFEGKTLVSVTKEGLELPEDEEEKKKQEEKKTKFENLCKIMKDILEKKVEKVVVSNRLVTSPCCIVTSTYGWTA 318 (448)
T ss_dssp HTTTCCEETTEEEEETTBSCCCCCCCHHHHHHHHHHHHHSHHHHHHHHHHTGGGCSEEEECSSCSSSSEEEEECSSSCCH
T ss_pred HHHHHHhhCCceEEEecccccCcccchhhhhhHHHHHHHHHHHHHHHHHHhcCcceEEEecCCCCCCCeEEEeCCcchhH
Confidence 9999999999999999999999977655433 45677899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCcccccccceeEEeCCCChHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHH
Q 003827 657 NMERLMKAQALGDTSSLEFMRGRRILEINPDHPIVKDLNAACKNAPDSTDAKRAVDLLYDTALISSGFTPDSPADLGNKI 736 (793)
Q Consensus 657 ~Merimkaq~~~d~~~~~~~~~kk~LEINp~HpLIk~L~~~~~~~~~d~~~~~l~~lLyd~ALL~sG~~leDp~~fa~ri 736 (793)
+||||||+|++++++++++|.++++|||||+||||++|.++.+.+++++.++++|++|||||||++|++|+||+.|++||
T Consensus 319 ~Merimkaq~~~d~~~~~~~~~kk~LEINp~Hpli~~L~~~~~~d~~~~~~~~~~~lLyd~AlL~~G~~l~DP~~f~~ri 398 (448)
T 3q6m_A 319 NMERIMKAQALRDNSTMGYMAAKKHLEINPDHSIIETLRQKAEADKNDKSVKDLVILLYETALLSSGFSLEDPQTHANRI 398 (448)
T ss_dssp HHHHHCCC--------------CEEEEECTTCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCCSCHHHHHHHH
T ss_pred HHHHHHHHhhccccccccccccCceeEECCCCHHHHHHHHHhhcccchhHHHHHHHHHHHhHHhcCCCCCCCHHHHHHHH
Confidence 99999999998877777788899999999999999999999888877889999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCCCCC----CccccccCCCCccccccCcCCcccccC
Q 003827 737 YEMMAMALGGRWGRSDG----DEAESVEGNATESEISAGEASEAQVVE 780 (793)
Q Consensus 737 ~~LL~~~L~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~e~~d 780 (793)
++||.++|| +++++. ++++++++.||+++ +++++.||+||
T Consensus 399 ~~ll~~~L~--id~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 442 (448)
T 3q6m_A 399 YRMIKLGLG--IDEDDPTADDTSAAVTEEMPPLEG--DDDTSRMEEVD 442 (448)
T ss_dssp HHHHHHTTC---------------------------------------
T ss_pred HHHHHHhcC--CCccccccccccccccCCCCCCCC--Ccchhhhhhhc
Confidence 999999999 876532 22334456677766 57889999887
No 6
>3hjc_A Heat shock protein 83-1; sleeping sickness, structura genomics, stress response protein, chaperone, structural GE consortium, SGC; 2.50A {Leishmania major}
Probab=100.00 E-value=7.3e-123 Score=1031.78 Aligned_cols=415 Identities=44% Similarity=0.817 Sum_probs=372.0
Q ss_pred cceeeecCCCcccccCCCCCCHHHHHHHHHHHhcccCCCcceeeecccceeEEEEEEEeeCCCCCCccccccccccceEE
Q 003827 331 WDWELANETKPIWMRNPKEIEKDEYHEFYKKTFNEFLDPLAYTHFTTEGEVEFRSVLYIPGMGPLNNEEIMNPKTKNIRL 410 (793)
Q Consensus 331 ~~~~~~N~~~~iW~r~~~~v~~eey~~fyk~~~~~~~~pl~~~h~~~eg~~~~~~ll~iP~~~p~~~~~~~~~~~~~i~L 410 (793)
.+|+.+|+++|||+|+|++||+|+|.+|||+++++|++||+|+||++||+++|+||||||+.+||++|+ .+..+++|+|
T Consensus 11 ~~~e~iN~~~plW~r~~~eit~EeY~eFYk~l~~d~~dPL~~iH~~veg~~~~~~lLyiP~~ap~dl~~-~~~~~~~ikL 89 (444)
T 3hjc_A 11 RENLYFQGHKPLWTRDPKDVTKEEYAAFYKAISNDWEDPAATKHFSVEGQLEFRSIMFVPKRAPFDMFE-PNKKRNNIKL 89 (444)
T ss_dssp --------CCCGGGSCGGGCCHHHHHHHHHHTSSCCSCCSEEEEEEECSSSCEEEEEEECSSCCC-----CCCCCCSEEE
T ss_pred CCceeccCCCCCCCCCcccCCHHHHHHHHHHhcCCccCCceeEEEEecccceeeEEEecCCCCCcchhh-hhhhcCCeeE
Confidence 379999999999999999999999999999999999999999999999999999999999999999986 3456799999
Q ss_pred EeeeeeeccCCCCCCCcccccccceeecCCCCCCcccHHhhhccHHHHHHHHHHHHHHHHHHHhhhhccCHHHHHHHHHH
Q 003827 411 YVKRVFISDDFDGELFPRYLSFVKGVVDSDDLPLNVSREILQESRIVRIMRKRLVRKTFDMIQDISQSENKEDYKKFWEN 490 (793)
Q Consensus 411 Yv~rVfI~D~~~~~LlP~wl~FvrGVVDS~DLpLNvSRE~LQ~~~~l~~Irk~l~~k~l~~l~~la~~~d~e~y~kf~~~ 490 (793)
|||||||+|+|+ +|||+||+||||||||+|||||||||+||+|++|++||+.|++||+++|.+++ +|+++|++||++
T Consensus 90 Yv~rVfI~D~~~-ellP~yL~FvkGVVDS~DLPLNVSRE~LQ~~~~lk~I~k~i~kKvl~~L~~la--~d~e~Y~kFw~~ 166 (444)
T 3hjc_A 90 YVRRVFIMDNCE-DLCPDWLGFVKGVVDSEDLPLNISRENLQQNKILKVIRKNIVKKCLEMFDEVA--ENKEDYKQFYEQ 166 (444)
T ss_dssp EETTEEEESCCG-GGSCGGGTTCEEEEEESSCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHT--TSHHHHHHHHHH
T ss_pred EEeeeEeecchh-hhchHHHhhheEEeccCCCCccccHHHhccCHHHHHHHHHHHHHHHHHHHHHH--hCHHHHHHHHHH
Confidence 999999999999 99999999999999999999999999999999999999999999999999999 599999999999
Q ss_pred HhHHhheecccCcccHHhhcCccceeeccCCCcccCHHHHHHhcccCCCeEEEEecCCHHHHhhChhHHHHHhcCceEEe
Q 003827 491 FGRFLKLGCVEDSGNHKRLAPLLRFYTSKSEEELISLDEYVENMGEKQNAIYYLATDSLKSAKSAPFLEKLVQKDIEVLY 570 (793)
Q Consensus 491 fg~~lK~G~~eD~~~~~~l~~LLrF~Ts~~~~~~~SL~eYv~rmke~Qk~IYY~~~~s~~~~~~Sp~lE~~~~kG~eVL~ 570 (793)
||++||+|+++|..||++|++||||+||+++++++||+||++|||++|+.|||++|+|++++++|||+|.|++|||||||
T Consensus 167 fg~~lK~G~~eD~~~~~~l~~lLrF~ss~~~~~~~SL~eYv~rmke~Qk~IYYitg~s~~~~~~sp~lE~~k~kG~EVL~ 246 (444)
T 3hjc_A 167 FGKNIKLGIHEDTANRKKLMELLRFYSTESGEEMTTLKDYVTRMKAGQKSIYYITGDSKKKLETSPFIEQARRRGLEVLF 246 (444)
T ss_dssp HHHHHHHHHTTCGGGHHHHHHHCCBCBTTTTTSCBCHHHHHHTCCTTCCEEEEEECSCHHHHHTCGGGHHHHHHTCCEEE
T ss_pred HhHHHhccccccHHHHHHHHHheEeeeecCCCCcCcHHHHHHhccccCceEEEEeCCCHHHHHhChHHHHHHhCCcEEEE
Confidence 99999999999999999999999999999878899999999999999999999999999999999999999999999999
Q ss_pred cCCCchHHHHHHHhhccCcceeeccccccCCCCchhHhh--HhhHHHHHHHHHHHHHHhccceeEEEEeecCCCCCeEEE
Q 003827 571 LIEPIDEVAIQNLQTFNEKKFVDISKEDLELGDEDEVKE--RETKQEFNLLCDWIKQQLGDKVAKVQVSKRLSSSPCVLV 648 (793)
Q Consensus 571 l~dpiDE~~l~~L~e~~gkkf~~V~k~~l~l~~~~e~~~--e~~~~e~~~L~~~lk~~L~~kV~~V~vS~RL~~sP~~lv 648 (793)
|+|||||+||++|++|+|++|++|+++++++++.+++++ ++.+++|++||+|||++||++|++|++|+||++||||||
T Consensus 247 l~d~iDe~~i~~L~e~~gk~f~sV~k~~l~l~~~eeek~~~ee~~~~~~~L~~~~K~~L~~kV~~V~vS~RL~~sP~~lv 326 (444)
T 3hjc_A 247 MTEPIDEYVMQQVKDFEDKKFACLTKEGVHFEESEEEKQQREEEKAACEKLCKTMKEVLGDKVEKVIVSERLSTSPCILV 326 (444)
T ss_dssp ECSHHHHHHHHHCCEETTEEEEETTBSSCCCCCCHHHHHHHHHHHHHTHHHHHHHHHHHGGGCSEEEECSSCSSSSEEEE
T ss_pred eCCchHHHHHHHHHHhCCceEEEeccccccchhhhhhhhhhHHHHHHHHHHHHHHHHHhcCcceEEEecCCCCCCCeEEE
Confidence 999999999999999999999999999999877655433 556778999999999999999999999999999999999
Q ss_pred eCCCCccHHHHHHHHHHhcCCCCcccccccceeEEeCCCChHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHhCCCCCCC
Q 003827 649 SGKFGWSANMERLMKAQALGDTSSLEFMRGRRILEINPDHPIVKDLNAACKNAPDSTDAKRAVDLLYDTALISSGFTPDS 728 (793)
Q Consensus 649 ~~e~g~s~~Merimkaq~~~d~~~~~~~~~kk~LEINp~HpLIk~L~~~~~~~~~d~~~~~l~~lLyd~ALL~sG~~leD 728 (793)
++++|||++|||||++|+++++++.++|.++++|||||+||||++|.++.+.+++++.++++|++|||||||++|++++|
T Consensus 327 ~~e~g~s~~Merimka~~~~~~~~~~~~~~k~~LEINp~Hpli~~L~~~~~~d~~~~~~~~l~~lLyd~AlL~~G~~led 406 (444)
T 3hjc_A 327 TSEFGWSAHMEQIMRNQALRDSSMAQYMMSKKTMELNPRHPIIKELRRRVGADENDKAVKDLVFLLFDTSLLTSGFQLED 406 (444)
T ss_dssp BCSSSBCHHHHHHHHHC--------CTTBCCCEEEECTTSHHHHHHHHHHHTC-CCHHHHHHHHHHHHHHHHHHTCCCSC
T ss_pred cCCccccHHHHHHHHHhcccccccccccccCeeEEECCCCHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhCCCCccc
Confidence 99999999999999999887766667888999999999999999999998877778899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCC
Q 003827 729 PADLGNKIYEMMAMALGGRWGRS 751 (793)
Q Consensus 729 p~~fa~ri~~LL~~~L~~~~~~~ 751 (793)
|+.|++|+++||.++|| ++++
T Consensus 407 p~~f~~ri~~ll~~~l~--~~~~ 427 (444)
T 3hjc_A 407 PTGYAERINRMIKLGLS--LDEE 427 (444)
T ss_dssp HHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHhcC--CCcc
Confidence 99999999999999999 8865
No 7
>2cge_A ATP-dependent molecular chaperone HSP82; chaperone complex, heat shock protein, CO-chaperone, ATP-binding, heat shock; 3.0A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.6e-117 Score=979.33 Aligned_cols=402 Identities=45% Similarity=0.821 Sum_probs=380.8
Q ss_pred CCcccccCCCCCCHHHHHHHHHHHhcccCCCcceeeecccceeEEEEEEEeeCCCCCCccccccccccceEEEeeeeeec
Q 003827 339 TKPIWMRNPKEIEKDEYHEFYKKTFNEFLDPLAYTHFTTEGEVEFRSVLYIPGMGPLNNEEIMNPKTKNIRLYVKRVFIS 418 (793)
Q Consensus 339 ~~~iW~r~~~~v~~eey~~fyk~~~~~~~~pl~~~h~~~eg~~~~~~ll~iP~~~p~~~~~~~~~~~~~i~LYv~rVfI~ 418 (793)
++|||+|+|++||+|||.+|||+++++|++||+|+||++||+++|+||||||+.+|+++|+ .+..+++|+||||||||+
T Consensus 1 ~~plW~r~~~eit~EeY~eFYk~l~~d~~~PL~~iH~~veg~~~~~~lLyiP~~ap~d~~~-~~~~~~~ikLYvrrVfI~ 79 (405)
T 2cge_A 1 TKPLWTRNPSDITQEEYNAFYKSISNDWEDPLYVKHFSVEGQLEFRAILFIPKRAPFDLFE-SKKKKNNIKLYVRRVFIT 79 (405)
T ss_dssp CCCGGGSCGGGSCTTHHHHHHHHHHCCSSCCSEEEEEEECSSSCEEEEEEECSSCSSCSSS-SCCCCCCCEEEETTEEEE
T ss_pred CCCCcCCCcccCCHHHHHHHHHHhcCCCcCCeeEEEeccCCCcceeEEEEecCCCchhhhh-hhhccCCeEEEEeeeEec
Confidence 4699999999999999999999999999999999999999999999999999999999886 334579999999999999
Q ss_pred cCCCCCCCcccccccceeecCCCCCCcccHHhhhccHHHHHHHHHHHHHHHHHHHhhhhccCHHHHHHHHHHHhHHhhee
Q 003827 419 DDFDGELFPRYLSFVKGVVDSDDLPLNVSREILQESRIVRIMRKRLVRKTFDMIQDISQSENKEDYKKFWENFGRFLKLG 498 (793)
Q Consensus 419 D~~~~~LlP~wl~FvrGVVDS~DLpLNvSRE~LQ~~~~l~~Irk~l~~k~l~~l~~la~~~d~e~y~kf~~~fg~~lK~G 498 (793)
|+|+ +|||+||+||||||||+|||||||||+||+|++|++||+.|++||+++|.+++ +|+++|++||++||.+||+|
T Consensus 80 d~~~-~llP~yL~FvkGVVDS~DLPLNvSRE~LQ~~~~lk~I~~~l~kkvl~~L~~la--~~~e~y~kf~~~fg~~lK~G 156 (405)
T 2cge_A 80 DEAE-DLIPEWLSFVKGVVDSEDLPLNLSREMLQQNKIMKVIRKNIVKKLIEAFNEIA--EDSEQFEKFYSAFSKNIKLG 156 (405)
T ss_dssp SSCS-SSSCGGGTTCEEEEEESSCCSSCCTTCTHHHHHHHHHHHHHHHHHHHHHHHHT--TSHHHHHHHHHHHHHHHHHH
T ss_pred Cchh-hhChHHHHHHhhcccccccCcccChhhhcccHHHHHHHHHHHHHHHHHHHHHh--hCHHHHHHHHHHhhhhhcch
Confidence 9999 99999999999999999999999999999999999999999999999999999 47999999999999999999
Q ss_pred cccCcccHHhhcCccceeeccCCCcccCHHHHHHhcccCCCeEEEEecCCHHHHhhChhHHHHHhcCceEEecCCCchHH
Q 003827 499 CVEDSGNHKRLAPLLRFYTSKSEEELISLDEYVENMGEKQNAIYYLATDSLKSAKSAPFLEKLVQKDIEVLYLIEPIDEV 578 (793)
Q Consensus 499 ~~eD~~~~~~l~~LLrF~Ts~~~~~~~SL~eYv~rmke~Qk~IYY~~~~s~~~~~~Sp~lE~~~~kG~eVL~l~dpiDE~ 578 (793)
+++|..||++|++||||+||+++++++||+||++|||++|+.|||++|+|++++++|||+|.|++||||||||++||||+
T Consensus 157 ~~eD~~~~~~l~~lLrF~ss~~~~~~~sL~eYv~rmke~Q~~IyY~t~~s~~~~~~sp~~E~~k~kG~EVL~l~d~iDe~ 236 (405)
T 2cge_A 157 VHEDTQNRAALAKLLRYNSTKSVDELTSLTDYVTRMPEHQKNIYYITGESLKAVEKSPFLDALKAKNFEVLFLTDPIDEY 236 (405)
T ss_dssp HHHCTTTHHHHHTTCEECBSSCSSSCEEHHHHHHTCCTTCCSEEEEECSCHHHHHTCTTHHHHHHHTCCEEEECSHHHHH
T ss_pred hccCHHHHHHHHHhheeeecCCCCceeeHHHHHHhccCCCceEEEEeCCCHHHHhcChHHHHHHhCCCEEEEecCchHHH
Confidence 99999999999999999999877789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccCcceeeccccccCCCCchhHhh--HhhHHHHHHHHHHHHHHhccceeEEEEeecCCCCCeEEEeCCCCccH
Q 003827 579 AIQNLQTFNEKKFVDISKEDLELGDEDEVKE--RETKQEFNLLCDWIKQQLGDKVAKVQVSKRLSSSPCVLVSGKFGWSA 656 (793)
Q Consensus 579 ~l~~L~e~~gkkf~~V~k~~l~l~~~~e~~~--e~~~~e~~~L~~~lk~~L~~kV~~V~vS~RL~~sP~~lv~~e~g~s~ 656 (793)
||++|.+|+|++|++|+++ ++|++.+++++ ++.+++|++||+|||++|+++|.+|++|+||++||||+|++++|||+
T Consensus 237 ~i~~L~e~~gk~~~sV~~~-l~l~~~e~~~~~~~~~~~~~~~L~~~~k~~L~~~v~~V~~s~rl~~sP~~lv~~~~~~s~ 315 (405)
T 2cge_A 237 AFTQLKEFEGKTLVDITKD-FELEETDEEKAEREKEIKEYEPLTKALKEILGDQVEKVVVSYKLLDAPAAIRTGQFGWSA 315 (405)
T ss_dssp HHHHHCBSSSBEEESSBCC-CCSSSSTHHHHHHHHHHHHHHHHHHHHHHHHTTSCSEEEECSSCCSSSEEEEECSSSCCH
T ss_pred HHHHHHHhCCceeEEcccc-ccccccchhhhhhhHhHHHHHHHHHHHHHHhcCcceEEEEEeccCCCCeEEEeccccccH
Confidence 9999999999999999999 98876554433 45577899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCcccccccceeEEeCCCChHHHHHHHhhhcC-CCchHHHHHHHHHHHHHHHhCCCCCCCHHHHHHH
Q 003827 657 NMERLMKAQALGDTSSLEFMRGRRILEINPDHPIVKDLNAACKNA-PDSTDAKRAVDLLYDTALISSGFTPDSPADLGNK 735 (793)
Q Consensus 657 ~Merimkaq~~~d~~~~~~~~~kk~LEINp~HpLIk~L~~~~~~~-~~d~~~~~l~~lLyd~ALL~sG~~leDp~~fa~r 735 (793)
+|+|||++|+++++++.+++.++++|||||+||||++|.++.+++ ++++.++++|++|||||||++|++++||+.|++|
T Consensus 316 ~mer~~k~~~~~~~~~~~~~~~k~~LeiNp~Hpli~~L~~~~~~~~~~~~~~~~~~~~Lyd~AlL~~G~~~~dp~~f~~r 395 (405)
T 2cge_A 316 NMERIMKAQALRDSSMSSYMSSKKTFEISPKSPIIKELKKRVDEGGAQDKTVKDLTKLLYETALLTSGFSLDEPTSFASR 395 (405)
T ss_dssp HHHHHHHHHHTTSSSCCCCCCCCEEEEECTTSHHHHHHHHHHTTTGGGCHHHHHHHHHHHHHHHHHTTCCCSCHHHHHHH
T ss_pred HHHHHHHHhhccccccccccccCeeEEEcCCCHHHHHHHHhhhccccCHHHHHHHHHHHHHHHHHhCCCCcccHHHHHHH
Confidence 999999999888777767788899999999999999999876654 4567899999999999999999999999999999
Q ss_pred HHHHHHHHcC
Q 003827 736 IYEMMAMALG 745 (793)
Q Consensus 736 i~~LL~~~L~ 745 (793)
+++||.++||
T Consensus 396 ~~~ll~~~l~ 405 (405)
T 2cge_A 396 INRLISLGLN 405 (405)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHhcC
Confidence 9999999875
No 8
>1hk7_A Heat shock protein HSP82; ATPase, chaperone; 2.5A {Saccharomyces cerevisiae} SCOP: d.14.1.8
Probab=100.00 E-value=9.7e-91 Score=731.97 Aligned_cols=286 Identities=47% Similarity=0.852 Sum_probs=241.8
Q ss_pred CCcccccCCCCCCHHHHHHHHHHHhcccCCCcceeeecccceeEEEEEEEeeCCCCCCccccccccccceEEEeeeeeec
Q 003827 339 TKPIWMRNPKEIEKDEYHEFYKKTFNEFLDPLAYTHFTTEGEVEFRSVLYIPGMGPLNNEEIMNPKTKNIRLYVKRVFIS 418 (793)
Q Consensus 339 ~~~iW~r~~~~v~~eey~~fyk~~~~~~~~pl~~~h~~~eg~~~~~~ll~iP~~~p~~~~~~~~~~~~~i~LYv~rVfI~ 418 (793)
++|||+|+|++||+|||.+|||+++++|++||+|+||++||+++|+||||||+.+||++|+ .+...++|+||||||||+
T Consensus 1 ~~plW~r~~~eit~EeY~eFYk~l~~d~~dPL~~~H~~veg~~~~~~lLyiP~~ap~dl~~-~~~~~~~ikLYvrrVfI~ 79 (288)
T 1hk7_A 1 TKPLWTRNPSDITQEEYNAFYKSISNDWEDPLYVKHFSVEGQLEFRAILFIPKRAPFDLFE-SKKKKNNIKLYVRRVFIT 79 (288)
T ss_dssp CCCGGGSCTTTCCTTHHHHHHHHHHSCCSCCSEEEEEEECSSSCEEEEEEECSSCCCCCSS-SCCCCCCCEEEETTEEEE
T ss_pred CCCcccCCchhCCHHHHHHHHHHhcCCcccCeeEEEEeccCCceeEEEEEecCCCcchhhh-hhhccCCeEEEEeeeEee
Confidence 4699999999999999999999999999999999999999999999999999999999986 344579999999999999
Q ss_pred cCCCCCCCcccccccceeecCCCCCCcccHHhhhccHHHHHHHHHHHHHHHHHHHhhhhccCHHHHHHHHHHHhHHhhee
Q 003827 419 DDFDGELFPRYLSFVKGVVDSDDLPLNVSREILQESRIVRIMRKRLVRKTFDMIQDISQSENKEDYKKFWENFGRFLKLG 498 (793)
Q Consensus 419 D~~~~~LlP~wl~FvrGVVDS~DLpLNvSRE~LQ~~~~l~~Irk~l~~k~l~~l~~la~~~d~e~y~kf~~~fg~~lK~G 498 (793)
|+|+ +|||+||+||||||||+|||||||||+||+|++|++||+.|++||+++|.+++ +|+++|++||++||.+||+|
T Consensus 80 d~~~-~llP~yL~FvkGVVDS~DLPLNvSRE~LQ~~~~lk~I~k~i~kkvl~~l~~la--~d~e~Y~kf~~~fg~~lK~G 156 (288)
T 1hk7_A 80 DEAE-DLIPEWLSFVKGVVDSEDLPLNLSREMLQQNKIMKVIRKNIVKKLIEAFNEIA--EDSEQFEKFYSAFSKNIKLG 156 (288)
T ss_dssp SSCS-SSSCGGGTTCEEEEEESSCCCC-------CCHHHHHHHHHHHHHHHHHHHHHT--TSHHHHHHHHHHHHHHHHHH
T ss_pred cchh-hhchHHHHHHhhcccccccCCcccHHHhccCHHHHHHHHHHHHHHHHHHHHHh--hCHHHHHHHHHHHhHHHhhh
Confidence 9999 99999999999999999999999999999999999999999999999999999 69999999999999999999
Q ss_pred cccCcccHHhhcCccceeeccCCCcccCHHHHHHhcccCCCeEEEEecCCHHHHhhChhHHHHHhcCceEEecCCCchHH
Q 003827 499 CVEDSGNHKRLAPLLRFYTSKSEEELISLDEYVENMGEKQNAIYYLATDSLKSAKSAPFLEKLVQKDIEVLYLIEPIDEV 578 (793)
Q Consensus 499 ~~eD~~~~~~l~~LLrF~Ts~~~~~~~SL~eYv~rmke~Qk~IYY~~~~s~~~~~~Sp~lE~~~~kG~eVL~l~dpiDE~ 578 (793)
+++|..||++|++||||+||+++++++||+||++||+++|+.|||++|+|++++++|||+|+|++||||||||+|||||+
T Consensus 157 i~eD~~nr~~l~~LLrf~ss~~~~~~~SL~eYv~rmke~Qk~IYYitg~s~~~~~~sp~lE~~k~kg~EVL~l~d~iDe~ 236 (288)
T 1hk7_A 157 VHEDTQNRAALAKLLRYNSTKSVDELTSLTDYVTRMPEHQKNIYYITGESLKAVEKSPFLDALKAKNFEVLFLTDPIDEY 236 (288)
T ss_dssp HHHCTTTHHHHHTTCCBEESSCSSSCBCHHHHHHHSCTTCCEEEEEECSSHHHHHTCGGGHHHHTTTCCCEEECSHHHHH
T ss_pred hcccHHHHHHHHHHhccccccCCCCcccHHHHHhhCcCCCceEEEEeCCCHHHHhcCHHHHHHHHCCCEEEEecCchHHH
Confidence 99999999999999999999887789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccCcceeeccccccCCCCchhHhh--HhhHHHHHHHHHHHHHHhcc
Q 003827 579 AIQNLQTFNEKKFVDISKEDLELGDEDEVKE--RETKQEFNLLCDWIKQQLGD 629 (793)
Q Consensus 579 ~l~~L~e~~gkkf~~V~k~~l~l~~~~e~~~--e~~~~e~~~L~~~lk~~L~~ 629 (793)
||++|++|+|++|++|+++ ++|++.+++++ ++.+++|++||+|||++||+
T Consensus 237 ~i~~L~e~~gk~~~sv~k~-~~l~~~~eek~~~e~~~~~~~~L~~~~K~~L~~ 288 (288)
T 1hk7_A 237 AFTQLKEFEGKTLVDITKD-FELEETDEEKAEREKEIKEYEPLTKALKEILGD 288 (288)
T ss_dssp HHHHHCEETTEEEEETTTC----------------------------------
T ss_pred HHhhhhhcCCceeeecccc-ccccchhhhhhhhHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999998 88876544433 44567899999999999984
No 9
>2gq0_A Chaperone protein HTPG; molecular chaperone, HSP90, E. coli, hydrolase; 1.90A {Escherichia coli}
Probab=100.00 E-value=8.7e-90 Score=729.27 Aligned_cols=290 Identities=41% Similarity=0.725 Sum_probs=247.7
Q ss_pred CCcccccCCCCCCHHHHHHHHHHHhcccCCCcceeeecccceeEEEEEEEeeCCCCCCccccccccccceEEEeeeeeec
Q 003827 339 TKPIWMRNPKEIEKDEYHEFYKKTFNEFLDPLAYTHFTTEGEVEFRSVLYIPGMGPLNNEEIMNPKTKNIRLYVKRVFIS 418 (793)
Q Consensus 339 ~~~iW~r~~~~v~~eey~~fyk~~~~~~~~pl~~~h~~~eg~~~~~~ll~iP~~~p~~~~~~~~~~~~~i~LYv~rVfI~ 418 (793)
++|||+|+|++||+|||.+|||+++++|++||+|+||++||+++|+||||||+.+|+++|+ +..+++|+||||||||+
T Consensus 2 ~~plW~r~~~eit~EeY~eFYk~l~~d~~dPL~~iH~~vEg~~~~~~lLyiP~~ap~dl~~--~~~~~~ikLYvrrVfI~ 79 (303)
T 2gq0_A 2 AQALWTRNKSEITDEEYKEFYKHIAHDFNDPLTWSHNRVEGKQEYTSLLYIPSQAPWDMWN--RDHKHGLKLYVQRVFIM 79 (303)
T ss_dssp CCCGGGSCGGGSCHHHHHHHHHHHHTCCSCCSEEEEEEECSSSCEEEEEEECSSCCTTTTS--TTCCCSEEEEETTEEEE
T ss_pred CCCCcCCCcccCCHHHHHHHHHHHcCCccCcceeEEeccccccceeEEEEecCCCCchhhh--hhccCCeEEEEeceEee
Confidence 4799999999999999999999999999999999999999999999999999999999986 44679999999999999
Q ss_pred cCCCCCCCcccccccceeecCCCCCCcccHHhhhccHHHHHHHHHHHHHHHHHHHhhhhccCHHHHHHHHHHHhHHhhee
Q 003827 419 DDFDGELFPRYLSFVKGVVDSDDLPLNVSREILQESRIVRIMRKRLVRKTFDMIQDISQSENKEDYKKFWENFGRFLKLG 498 (793)
Q Consensus 419 D~~~~~LlP~wl~FvrGVVDS~DLpLNvSRE~LQ~~~~l~~Irk~l~~k~l~~l~~la~~~d~e~y~kf~~~fg~~lK~G 498 (793)
|+|+ +|||+||+||||||||+|||||||||+||+|++|++||+.|++|++++|.++| ++||++|++||++||++||+|
T Consensus 80 D~~e-eLlP~yL~FvkGVVDS~DLPLNvSRE~LQ~~~~lk~Irk~l~kKvl~~L~~la-~~d~e~Y~kF~~~fg~~lK~G 157 (303)
T 2gq0_A 80 DDAE-QFMPNYLRFVRGLIDSSDLPLNVSREILQDSTVTRNLRNALTKRVLQMLEKLA-KDDAEKYQTFWQQFGLVLKEG 157 (303)
T ss_dssp EEEG-GGSCGGGTTCEEEEEESSSCTTCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHH-HHCHHHHHHHHHHHHHHHTTH
T ss_pred cchh-hhchHHHHHhhcccccccCCcccchHhhcccHHHHHHHHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHhhh
Confidence 9999 99999999999999999999999999999999999999999999999999999 578999999999999999999
Q ss_pred cccCcccHHhhcCccceeeccCC--CcccCHHHHHHhcccCCCeEEEEecCCHHHHhhChhHHHHHhcCceEEecCCCch
Q 003827 499 CVEDSGNHKRLAPLLRFYTSKSE--EELISLDEYVENMGEKQNAIYYLATDSLKSAKSAPFLEKLVQKDIEVLYLIEPID 576 (793)
Q Consensus 499 ~~eD~~~~~~l~~LLrF~Ts~~~--~~~~SL~eYv~rmke~Qk~IYY~~~~s~~~~~~Sp~lE~~~~kG~eVL~l~dpiD 576 (793)
+++|..||++|++||||+||+++ ++++||+||++|||++|+.|||++|+|++++++|||+|.|++||||||||+||||
T Consensus 158 i~eD~~nr~~l~~LLrF~Ss~~~~~~~~~SL~eYv~rmke~Qk~IYYitg~s~~~~~~sp~lE~~k~kG~EVL~l~d~iD 237 (303)
T 2gq0_A 158 PAEDFANQEAIAKLLRFASTHTDSSAQTVSLEDYVSRMKEGQEKIYYITADSYAAAKSSPHLELLRKKGIEVLLLSDRID 237 (303)
T ss_dssp HHHCGGGHHHHHTTCCBEETTTTCCCCCBCHHHHHHTCCTTCCSEEEEECSSHHHHHTCGGGHHHHHHTCCEEEECSTTH
T ss_pred hhcCHHHHHHHHHhheeeecCCCccCCeeeHHHHHHhcccCCceEEEEeCCCHHHHhcChHHHHHHHCCCeEEEeCchhH
Confidence 99999999999999999999865 5899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCcceeeccccccCCCCchhHhhHhhHHHHHHHHHHHHHHhcccee--EEEEeecCCCCCeEEEeC
Q 003827 577 EVAIQNLQTFNEKKFVDISKEDLELGDEDEVKERETKQEFNLLCDWIKQQLGDKVA--KVQVSKRLSSSPCVLVSG 650 (793)
Q Consensus 577 E~~l~~L~e~~gkkf~~V~k~~l~l~~~~e~~~e~~~~e~~~L~~~lk~~L~~kV~--~V~vS~RL~~sP~~lv~~ 650 (793)
|+||++|++|+|++|++|++++++|++.+ ++.||++|. +|.+|+||++||||+++.
T Consensus 238 e~~i~~L~e~~gk~f~sV~k~~l~l~~~~------------------~~~l~~~~~~~~~~~~~~~~s~~~~~~~~ 295 (303)
T 2gq0_A 238 EWMMNYLTEFDGKPFQSVSKVDESLEKLA------------------DGDLGTLVPRGSMAISDPNSSSVDKLAAA 295 (303)
T ss_dssp HHHTTTCCEETTEEEEETTC--------------------------------------------------------
T ss_pred HHHHHHHHhcCCcceEEeeccccCccccc------------------hhhhccccccCCccccCcCCcchHHHHHH
Confidence 99999999999999999999999885321 345788888 899999999999999874
No 10
>3pry_A Heat shock protein HSP 90-beta; structural genomics, structural genomics consortium, SGC, HE protein, chaperone; 2.28A {Homo sapiens} SCOP: d.14.1.8
Probab=100.00 E-value=3.5e-87 Score=699.46 Aligned_cols=263 Identities=49% Similarity=0.889 Sum_probs=249.9
Q ss_pred cCCCcccccCCCCCCHHHHHHHHHHHhcccCCCcceeeecccceeEEEEEEEeeCCCCCCccccccccccceEEEeeeee
Q 003827 337 NETKPIWMRNPKEIEKDEYHEFYKKTFNEFLDPLAYTHFTTEGEVEFRSVLYIPGMGPLNNEEIMNPKTKNIRLYVKRVF 416 (793)
Q Consensus 337 N~~~~iW~r~~~~v~~eey~~fyk~~~~~~~~pl~~~h~~~eg~~~~~~ll~iP~~~p~~~~~~~~~~~~~i~LYv~rVf 416 (793)
|+++|||+|+|++||+|||.+|||+++++|++||+|+||++||+++|+||||||+.+||++|+ .+..+++|+|||||||
T Consensus 1 ~~~~plW~r~~~eit~EeY~eFYk~l~~d~~dPL~~iH~~veg~~~~~~lLyiP~~ap~d~~~-~~~~~~~ikLYv~rVf 79 (268)
T 3pry_A 1 MKTKPIWTRNPDDITQEEYGEFYKSLTNDWEDHLAVKHFSVEGQLEFRALLFIPRRAPFDLFE-NKKKKNNIKLYVRRVF 79 (268)
T ss_dssp -CCSCGGGSCGGGCCHHHHHHHHHHHHCCSSCCSEEEEEEECSSSCEEEEEEECSSCCC---------CCCEEEEETTEE
T ss_pred CCCCCCCCCChhhCCHHHHHHHHHHhcCCccCchheeeecccCCeeEEEEEEccCCCchhhhh-hhhhcCCeeEEEEEEE
Confidence 467899999999999999999999999999999999999999999999999999999999986 3456799999999999
Q ss_pred eccCCCCCCCcccccccceeecCCCCCCcccHHhhhccHHHHHHHHHHHHHHHHHHHhhhhccCHHHHHHHHHHHhHHhh
Q 003827 417 ISDDFDGELFPRYLSFVKGVVDSDDLPLNVSREILQESRIVRIMRKRLVRKTFDMIQDISQSENKEDYKKFWENFGRFLK 496 (793)
Q Consensus 417 I~D~~~~~LlP~wl~FvrGVVDS~DLpLNvSRE~LQ~~~~l~~Irk~l~~k~l~~l~~la~~~d~e~y~kf~~~fg~~lK 496 (793)
|+|+|+ +|||+||+||||||||+|||||||||+||+|++|++||+.|++||+++|.++| +|+++|++||++||++||
T Consensus 80 I~d~~~-ellP~yL~FvkGVVDS~DLPLNVSRE~LQ~~~~lk~I~k~i~kkvl~~l~~la--~d~e~Y~~f~~~fg~~lK 156 (268)
T 3pry_A 80 IMDSCD-ELIPEYLNFIRGVVDSEDLPLNISREMLQQSKILKVIRKNIVKKCLELFSELA--EDKENYKKFYEAFSKNLK 156 (268)
T ss_dssp EESCCG-GGSCGGGTTCEEEEEESSSCSSCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHH--TSHHHHHHHHHHHHHHHH
T ss_pred eecchh-hhccchhhheEEEecCCCCCccccHHHhccCHHHHHHHHHHHHHHHHHHHHHH--hCHHHHHHHHHHHHHHHH
Confidence 999999 99999999999999999999999999999999999999999999999999999 799999999999999999
Q ss_pred eecccCcccHHhhcCccceeeccCCCcccCHHHHHHhcccCCCeEEEEecCCHHHHhhChhHHHHHhcCceEEecCCCch
Q 003827 497 LGCVEDSGNHKRLAPLLRFYTSKSEEELISLDEYVENMGEKQNAIYYLATDSLKSAKSAPFLEKLVQKDIEVLYLIEPID 576 (793)
Q Consensus 497 ~G~~eD~~~~~~l~~LLrF~Ts~~~~~~~SL~eYv~rmke~Qk~IYY~~~~s~~~~~~Sp~lE~~~~kG~eVL~l~dpiD 576 (793)
+|+++|..||++|++||||+||+++++++||+||++|||++|+.|||++|+|++++++|||+|+|++||||||||+||||
T Consensus 157 ~G~~eD~~~~~~l~~LLrf~ss~~~~~~~SL~eYv~rmke~Q~~IyYitg~s~~~~~~sp~~E~~k~kg~EVL~l~d~iD 236 (268)
T 3pry_A 157 LGIHEDSTNRRRLSELLRYHTSQSGDEMTSLSEYVSRMKETQKSIYYITGESKEQVANSAFVERVRKRGFEVVYMTEPID 236 (268)
T ss_dssp HHHHHCGGGHHHHHHTCEEEETTTTTSCEEHHHHHHTSCTTCCEEEEECSCCHHHHHTCHHHHHHHTTTCCEEECCSTTH
T ss_pred hHhhCCHHHHHHHHHHheeeeccCCCccEeHHHHHHhcccCCceEEEEeCCCHHHHHhChHHHHHHHcCceEEEeCCchH
Confidence 99999999999999999999998877899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCcceeeccccccCCCC
Q 003827 577 EVAIQNLQTFNEKKFVDISKEDLELGD 603 (793)
Q Consensus 577 E~~l~~L~e~~gkkf~~V~k~~l~l~~ 603 (793)
|+||++|++|+||+|+||++++++|++
T Consensus 237 e~~i~~L~ef~gk~l~sv~k~~l~l~e 263 (268)
T 3pry_A 237 EYCVQQLKEFDGKSLVSVTKEGLELAE 263 (268)
T ss_dssp HHHHHHHCEETTEEEEETTCSSCCCCC
T ss_pred HHHHHHHHhcCCceeeecccccCCCcc
Confidence 999999999999999999999999864
No 11
>1usu_A Heat shock protein HSP82; chaperone/complex, chaperone, activator, HSP90; 2.15A {Saccharomyces cerevisiae} SCOP: d.14.1.8 PDB: 1usv_A
Probab=100.00 E-value=1.6e-86 Score=692.65 Aligned_cols=257 Identities=48% Similarity=0.883 Sum_probs=241.4
Q ss_pred cCCCcccccCCCCCCHHHHHHHHHHHhcccCCCcceeeecccceeEEEEEEEeeCCCCCCccccccccccceEEEeeeee
Q 003827 337 NETKPIWMRNPKEIEKDEYHEFYKKTFNEFLDPLAYTHFTTEGEVEFRSVLYIPGMGPLNNEEIMNPKTKNIRLYVKRVF 416 (793)
Q Consensus 337 N~~~~iW~r~~~~v~~eey~~fyk~~~~~~~~pl~~~h~~~eg~~~~~~ll~iP~~~p~~~~~~~~~~~~~i~LYv~rVf 416 (793)
|+++|||+|+|++||+|||.+|||+++++|++||+|+||++||+++|+||||||+.+|+++|+ .+..+++|+|||||||
T Consensus 1 N~~~plW~r~~~eit~EeY~eFYk~l~~d~~~PL~~iH~~veg~~~~~~lLyiP~~ap~d~~~-~~~~~~~ikLYvrrVf 79 (260)
T 1usu_A 1 GPTKPLWTRNPSDITQEEYNAFYKSISNDWEDPLYVKHFSVEGQLEFRAILFIPKRAPFDLFE-SKKKKNNIKLYVRRVF 79 (260)
T ss_dssp -CCCCGGGSCGGGCCHHHHHHHHHHHHCCSSCCSEEEEEEECSSSCEEEEEEECSSCCTTTTC-C----CCEEEEETTEE
T ss_pred CCcCCcccCCcccCCHHHHHHHHHHhcCCccCCeeEEEeeccCcceeEEEEEecCCCchhhhh-hhhccCCeEEEEeeeE
Confidence 789999999999999999999999999999999999999999999999999999999999986 3445799999999999
Q ss_pred eccCCCCCCCcccccccceeecCCCCCCcccHHhhhccHHHHHHHHHHHHHHHHHHHhhhhccCHHHHHHHHHHHhHHhh
Q 003827 417 ISDDFDGELFPRYLSFVKGVVDSDDLPLNVSREILQESRIVRIMRKRLVRKTFDMIQDISQSENKEDYKKFWENFGRFLK 496 (793)
Q Consensus 417 I~D~~~~~LlP~wl~FvrGVVDS~DLpLNvSRE~LQ~~~~l~~Irk~l~~k~l~~l~~la~~~d~e~y~kf~~~fg~~lK 496 (793)
|+|+|+ +|||+||+||||||||+|||||||||+||+|++|++||+.|++|++++|.++| +|+++|++||++||++||
T Consensus 80 I~d~~~-~llP~yL~FvkGVVDS~DLpLNvSRE~LQ~~~~lk~I~~~l~kkvl~~l~~la--~d~e~y~~f~~~fg~~lK 156 (260)
T 1usu_A 80 ITDEAE-DLIPEWLSFVKGVVDSEDLPLNLSREMLQQNKIMKVIRKNIVKKLIEAFNEIA--EDSEQFEKFYSAFSKNIK 156 (260)
T ss_dssp EESCCT-TSSCGGGTTCEEEEEESSCCSCC------CCHHHHHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHH
T ss_pred eccchh-hhchHHHHHheeccccCCcCCccCHHHhcccHHHHHHHHHHHHHHHHHHHHHH--hCHHHHHHHHHHHhhhhc
Confidence 999999 99999999999999999999999999999999999999999999999999999 589999999999999999
Q ss_pred eecccCcccHHhhcCccceeeccCCCcccCHHHHHHhcccCCCeEEEEecCCHHHHhhChhHHHHHhcCceEEecCCCch
Q 003827 497 LGCVEDSGNHKRLAPLLRFYTSKSEEELISLDEYVENMGEKQNAIYYLATDSLKSAKSAPFLEKLVQKDIEVLYLIEPID 576 (793)
Q Consensus 497 ~G~~eD~~~~~~l~~LLrF~Ts~~~~~~~SL~eYv~rmke~Qk~IYY~~~~s~~~~~~Sp~lE~~~~kG~eVL~l~dpiD 576 (793)
+|+++|..||++|++||||+||+++++++||+||++|||++|+.|||++|+|++++++|||+|+|++||||||||+||||
T Consensus 157 ~G~~eD~~n~~~l~~lLrf~ss~~~~~~~sL~eYv~rmke~Q~~IyY~t~~s~~~~~~sp~lE~~k~kg~EVL~l~d~iD 236 (260)
T 1usu_A 157 LGVHEDTQNRAALAKLLRYNSTKSVDELTSLTDYVTRMPEHQKNIYYITGESLKSVEKSPFLDALKAKNFEVLFLTDPID 236 (260)
T ss_dssp HHHHHCTTTHHHHHTTCEEEETTEEEEEEEHHHHHHTSCTTCCEEEEEECSSHHHHHTCTTHHHHHHTTCCEEEECSHHH
T ss_pred chhccCHHHHHHHHHhhEeeecCCCCceeeHHHHHHhccCCCceEEEEeCCCHHHHhcChHHHHHHhCCCeEEEeCCchH
Confidence 99999999999999999999998766799999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCcceeecccc
Q 003827 577 EVAIQNLQTFNEKKFVDISKE 597 (793)
Q Consensus 577 E~~l~~L~e~~gkkf~~V~k~ 597 (793)
|+||++|++|+|++|++|+++
T Consensus 237 e~~i~~L~e~~gk~~~sv~k~ 257 (260)
T 1usu_A 237 EYAFTQLKEFEGKTLVDITKD 257 (260)
T ss_dssp HHHHHHHCEETTEEEEETTCC
T ss_pred HHHHHHHHhhCCceEEecccc
Confidence 999999999999999999998
No 12
>1y6z_A Heat shock protein, putative; chaperone, structural genomics, structural genom consortium, SGC, unknown function; 1.88A {Plasmodium falciparum}
Probab=100.00 E-value=3.1e-84 Score=679.34 Aligned_cols=260 Identities=42% Similarity=0.844 Sum_probs=232.5
Q ss_pred cCCCcccccCCCCCCHHHHHHHHHHHhcccCCCcceeeecccceeEEEEEEEeeCCCCCCccc-cccccccceEEEeeee
Q 003827 337 NETKPIWMRNPKEIEKDEYHEFYKKTFNEFLDPLAYTHFTTEGEVEFRSVLYIPGMGPLNNEE-IMNPKTKNIRLYVKRV 415 (793)
Q Consensus 337 N~~~~iW~r~~~~v~~eey~~fyk~~~~~~~~pl~~~h~~~eg~~~~~~ll~iP~~~p~~~~~-~~~~~~~~i~LYv~rV 415 (793)
|+++|||+|+|+++|+|||.+|||+++++|++||+|+||++||+++|+||||||+.+||+++. ..+..+++|+||||||
T Consensus 1 N~~~plW~r~~~eit~eeY~eFYk~l~~~~~~PL~~iH~~veg~~~~~~lLyiP~~ap~d~~~~~~~~~~~~ikLYvrrV 80 (263)
T 1y6z_A 1 GHQLPIWKQDEKSLTENDYYSFYKNTFKAYDDPLAYVHFNVEGQISFNSILYIPGSLPWELSKNMFDEESRGIRLYVKRV 80 (263)
T ss_dssp ----CGGGSCTTSCCHHHHHHHHHHHHTCCSCCSEEEEEEEESSSEEEEEEEECSSCCHHHHHCCC----CCEEEEETTE
T ss_pred CCcCCCcCCCcccCCHHHHHHHHHHhcCCccCcceeEEeccCCccceEEEEEecCCCchhhhhhhhHhhhcCeeEEEeee
Confidence 788999999999999999999999999999999999999999999999999999999998764 1244579999999999
Q ss_pred eeccCCCCCCCcccccccceeecCCCCCCcccHHhhhccHHHHHHHHHHHHHHHHHHHhhhhccCHHHHHHHHHHHhHHh
Q 003827 416 FISDDFDGELFPRYLSFVKGVVDSDDLPLNVSREILQESRIVRIMRKRLVRKTFDMIQDISQSENKEDYKKFWENFGRFL 495 (793)
Q Consensus 416 fI~D~~~~~LlP~wl~FvrGVVDS~DLpLNvSRE~LQ~~~~l~~Irk~l~~k~l~~l~~la~~~d~e~y~kf~~~fg~~l 495 (793)
||+|+|+ +|||+||+||||||||+|||||||||+||+|++|++||+.|++|++++|.++| ++||++|++||++||++|
T Consensus 81 fI~d~~~-~llP~yL~FvkGVVDS~DLpLNvSRE~LQ~~~~l~~Irk~l~kkvl~~l~~la-~~d~e~y~kf~~~fg~~l 158 (263)
T 1y6z_A 81 FINDKFS-ESIPRWLTFLRGIVDSENLPLNVGREILQKSKMLSIINKRIVLKSISMMKGLK-ETGGDKWTKFLNTFGKYL 158 (263)
T ss_dssp EEESCGG-GGSCGGGTTCEEEEEECC------------CTTHHHHHHHHHHHHHHHHHHHH-HHCSHHHHHHHHHHHHHH
T ss_pred Eeecchh-hhchHHHHHHeeccccccCCCccchhhhcccHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHhHHH
Confidence 9999999 99999999999999999999999999999999999999999999999999999 578999999999999999
Q ss_pred heecccCcccHHhhcCccceeeccCCCcccCHHHHHHhcccCCCeEEEEecCCHHHHhhChhHHHHHhcCceEEecCCCc
Q 003827 496 KLGCVEDSGNHKRLAPLLRFYTSKSEEELISLDEYVENMGEKQNAIYYLATDSLKSAKSAPFLEKLVQKDIEVLYLIEPI 575 (793)
Q Consensus 496 K~G~~eD~~~~~~l~~LLrF~Ts~~~~~~~SL~eYv~rmke~Qk~IYY~~~~s~~~~~~Sp~lE~~~~kG~eVL~l~dpi 575 (793)
|+|+++|..|+++|++||||+||+++++++||+||++|||++|+.|||++|+|++++++|||+|.|++||||||||++||
T Consensus 159 K~G~~eD~~~~~~l~~lLrf~ss~~~~~~~sL~eYv~rmke~Q~~IyY~t~~~~~~~~~sp~~E~~~~kg~EVL~l~~~i 238 (263)
T 1y6z_A 159 KIGVVEDKENQEEIASLVEFYSINSGDKKTDLDSYIENMKEDQKCIYYISGENKKTAQNSPSLEKLKALNYDVLFSLEPI 238 (263)
T ss_dssp HHHHHHCGGGHHHHHTTCEECBTTTTTSCEEHHHHHHTCCTTCCSEEEEECSSHHHHHTCGGGHHHHHHTCCCEEECSHH
T ss_pred ccccccCHHHHHHHHHhheeeeccCCCceeeHHHHHHhccCCCceEEEEeCCCHHHHhcCcHHHHHHhCCCeEEEeCCcH
Confidence 99999999999999999999999877789999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHH--hhccCcceeeccccc
Q 003827 576 DEVAIQNL--QTFNEKKFVDISKED 598 (793)
Q Consensus 576 DE~~l~~L--~e~~gkkf~~V~k~~ 598 (793)
||+||++| ++|+||+|++|++++
T Consensus 239 De~~i~~L~~~e~~gk~~~sv~k~~ 263 (263)
T 1y6z_A 239 DEFCLSSLTVNKYKGYEVLDVNKAD 263 (263)
T ss_dssp HHHHHHHHHHHCBTTBCEEETTCC-
T ss_pred HHHHHHHhhhhccCCceEEecCCCC
Confidence 99999999 599999999999874
No 13
>3peh_A Endoplasmin homolog; structural genomics, structural genomics consortium, SGC, HE protein, chaperone, ATP binding; HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A*
Probab=100.00 E-value=1.6e-60 Score=503.14 Aligned_cols=252 Identities=50% Similarity=0.790 Sum_probs=225.8
Q ss_pred CcccccchhhHHHHHHHHHHccCCCchHHHHHhHhhHhhHHHhhhhhhccCCCCCCCCCCceEEEEECCCCcEEEEEeCC
Q 003827 79 SGEKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTG 158 (793)
Q Consensus 79 ~~e~~~Fq~e~~~Ll~ll~~~LYs~~~vflRELIsNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnG 158 (793)
..++|.||+|+++||++|+++||||+++|||||||||+|||+|+||+++++++.+...+.+.|+|.+++++++|+|.|||
T Consensus 22 ~~e~~~Fqaei~~Ll~ll~~~lYsn~~ifLRELIsNA~DA~~k~r~~~l~d~~~~~~~~~l~I~I~~d~~~~tLtI~DNG 101 (281)
T 3peh_A 22 SMESHQYQTEVTRLMDIIVNSLYTQKEVFLRELISNAADALEKIRFLSLSDESVLGEEKKLEIRISANKEKNILSITDTG 101 (281)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTTCGGGGTTCCCCCEEEEEETTTTEEEEEECS
T ss_pred ccceeeehHHHHHHHHHHHHhccCChHHHHHHHHhChHHHHHHHHHHhcCCchhccCCCceEEEEEEcCCCcEEEEEeCC
Confidence 46899999999999999999999999999999999999999999999999999888888999999999999999999999
Q ss_pred CCCCHHHHHHHHhhhcccCchhHHHHhhhcccCCCCCccccccccccceecccccEEEEEEecCCCCCeEEEEEccCCce
Q 003827 159 IGMTKEELVDCLGTIAQSGTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADSSS 238 (793)
Q Consensus 159 iGMt~eeL~~~L~tIa~Sgt~~f~~~l~~~~~~~~d~~~IGqFGIGf~S~F~VadkV~V~Tr~~~~~~~~~w~s~~~~~~ 238 (793)
+|||+++|.++|++||+||++.|+++++. .+.+..+||||||||||+||||++|+|+||+++ +.+|.|++.+++.|
T Consensus 102 iGMt~edL~~~LgtIa~Sgtk~f~e~l~~---~~~d~~~IGqFGVGFySaf~vadkV~V~Sk~~~-~~~~~Wes~g~g~f 177 (281)
T 3peh_A 102 IGMTKVDLINNLGTIAKSGTSNFLEAISK---SGGDMSLIGQFGVGFYSAFLVADKVIVYTKNND-DEQYIWESTADAKF 177 (281)
T ss_dssp CCCCHHHHHHHHHHHHHSCHHHHHHHHHH---TTCCSTTTTTTTCGGGGGGGTEEEEEEEEECTT-SCCEEEEEETTSCE
T ss_pred CCCCHHHHHHHHHHHHhHhhhhHHHhhhc---cccccccccccCccchhhccccCEEEEEEecCC-CCEEEEEECCCccE
Confidence 99999999999999999999999999874 135678999999999999999999999999987 68999999999999
Q ss_pred EEEEccCCCCCCCCCCeEEEEEecCCCcccCCchhhHHHHHHhhcCCCccCeEecccccccccccccCCCC------CCC
Q 003827 239 YVIREETDPEKLLKRGTQITLYLKEDDKYEFSEPTRIQGLVKNYSQFVSFPIYTWQEKSRTIEVEEEEKPE------EGE 312 (793)
Q Consensus 239 ~i~~~~~~~~~~~~~GT~I~L~Lk~d~~~e~~~~~~i~~li~~ys~fi~~pI~l~~~~~~~~~~~~~~~~~------~~~ 312 (793)
+|.+++ .++..++||+|+||||++.. +|+++++|+++|++||+|++|||+++.+|+++++|+++++++ +++
T Consensus 178 ti~~~~--~~~~~~~GT~I~L~Lked~~-e~le~~~ik~ivkkys~fi~~pI~l~~~k~~~~ev~~~~~~~~~~~~~~~~ 254 (281)
T 3peh_A 178 TIYKDP--RGATLKRGTRISLHLKEDAT-NLLNDKKLMDLISKYSQFIQFPIYLLHENVYTEEVLADIAKDMVNDPNYDS 254 (281)
T ss_dssp EEEECT--TCSTTSSEEEEEEEECGGGG-GGGSHHHHHHHHHHHTTTCCSCEEEEEEEEEEEEEEHHHHHHHTTCTTSSE
T ss_pred EEEEcC--CCCCCCCCeEEEEEECCchh-hhcCHHHHHHHHHHhhccCCcceEEeeeeeeeeccCcchhhhccccccccc
Confidence 999864 23457899999999999998 999999999999999999999999999999999988765221 111
Q ss_pred --CCcccccccccccccccccceeeec
Q 003827 313 --EQPEGEKKTKKTTKTEKYWDWELAN 337 (793)
Q Consensus 313 --~~~~~~~~~~~~~~~~~~~~~~~~N 337 (793)
+++++++++|+||+++++++|+++|
T Consensus 255 ~e~~~~~~~~~k~k~~~~~~~~~e~~n 281 (281)
T 3peh_A 255 VKVEETDDPNKKTRTVEKKVKKWTLMN 281 (281)
T ss_dssp EEECCCCCTTCCEEEEEEEEEEEEECC
T ss_pred cccccccccccCCcceEEEEEEeEecC
Confidence 2222345567889999999999998
No 14
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A*
Probab=100.00 E-value=1.1e-55 Score=467.25 Aligned_cols=254 Identities=50% Similarity=0.827 Sum_probs=204.7
Q ss_pred CcccccchhhHHHHHHHHHHccCCCchHHHHHhHhhHhhHHHhhhhhhccCCCCCCCCCCceEEEEECCCCcEEEEEeCC
Q 003827 79 SGEKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTG 158 (793)
Q Consensus 79 ~~e~~~Fq~e~~~Ll~ll~~~LYs~~~vflRELIsNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnG 158 (793)
..++|.||+++++||++|+|+||||+++|||||||||+||++|+||+++++++.+...+.+.|+|.++++.++|+|.|||
T Consensus 4 ~~e~~~Fqaei~~Ll~li~~~lYsn~eifLrELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~i~~d~~~~~l~I~DnG 83 (269)
T 1qy5_A 4 KSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEKNLLHVTDTG 83 (269)
T ss_dssp CEEEECCCHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHCTTTTTTCCCCCEEEEEETTTTEEEEEECS
T ss_pred cccceeehhhHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhhhhhccCchhccCCCceEEEEEEcCCceEEEEEECC
Confidence 35899999999999999999999999999999999999999999999999999888888899999999888999999999
Q ss_pred CCCCHHHHHHHHhhhcccCchhHHHHhhhcccC-CCCCccccccccccceecccccEEEEEEecCCCCCeEEEEEccCCc
Q 003827 159 IGMTKEELVDCLGTIAQSGTSKFLKALKENNDL-GADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADSS 237 (793)
Q Consensus 159 iGMt~eeL~~~L~tIa~Sgt~~f~~~l~~~~~~-~~d~~~IGqFGIGf~S~F~VadkV~V~Tr~~~~~~~~~w~s~~~~~ 237 (793)
+|||+++|.++|++||+||++.|+++++...+. ..+..+||||||||||+||||++|+|+||+.+ +.+|.|++.+ +.
T Consensus 84 iGMt~edl~~~l~tia~Sgtk~F~~kl~~~~~~~~~d~~~IG~fGvGfySaf~va~~v~V~Sk~~~-~~~~~w~s~g-g~ 161 (269)
T 1qy5_A 84 VGMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSKHNN-DTQHIWESDS-NE 161 (269)
T ss_dssp CCCCHHHHHHHHHSCCSHHHHHHHHHHHHHHHHTCCCHHHHHHTTCGGGGGGGTEEEEEEEEECTT-SCCEEEEECS-SC
T ss_pred CCCCHHHHHHHhhhhcccccHHHHHhhhhcccccccchhhcCCccccHHHHhhccceEEEEEEecC-CcEEEEEEeC-CE
Confidence 999999999999999999999999988741000 14668999999999999999999999999987 5799999999 89
Q ss_pred eEEEEccCCCCCCCCCCeEEEEEecCCCcccCCchhhHHHHHHhhcCCCccCeEecccccccccccccCCCC-------C
Q 003827 238 SYVIREETDPEKLLKRGTQITLYLKEDDKYEFSEPTRIQGLVKNYSQFVSFPIYTWQEKSRTIEVEEEEKPE-------E 310 (793)
Q Consensus 238 ~~i~~~~~~~~~~~~~GT~I~L~Lk~d~~~e~~~~~~i~~li~~ys~fi~~pI~l~~~~~~~~~~~~~~~~~-------~ 310 (793)
|++.+.. .+...++||+|+|+|+++.. +|++.++|+++|++||.|++|||+++.+|+++++|+++++++ +
T Consensus 162 ~~i~~~~--~~~~~~~GT~I~L~Lk~d~~-e~le~~~i~~lvkkys~fi~~PI~l~~~k~~~~~~~~~~~~~~~~~~~~~ 238 (269)
T 1qy5_A 162 FSVIADP--RGNTLGRGTTITLVLKEEAS-DYLELDTIKNLVKKYSQFINFPIYVWSSKTETVEEPMEEEEAAKEEKEDS 238 (269)
T ss_dssp EEEEECT--TCSCSSSEEEEEEEECGGGG-GGGSHHHHHHHHHTTCTTCSSCEEEEEECC--------------------
T ss_pred EEEEecc--CCCcCCCCeEEEEEEcccch-hhhhHHHHHHHHHhhhcccceeeEEeeeeeeeeccCccchhhhhhccccc
Confidence 9998753 12346899999999999988 999999999999999999999999999998888877655221 0
Q ss_pred CC--CCccc--ccccccccccccccceeeec
Q 003827 311 GE--EQPEG--EKKTKKTTKTEKYWDWELAN 337 (793)
Q Consensus 311 ~~--~~~~~--~~~~~~~~~~~~~~~~~~~N 337 (793)
++ +++++ ++++|+|++++++++|+++|
T Consensus 239 ~~~~~~~~~~~~~~~k~k~~~~~~~~~e~~n 269 (269)
T 1qy5_A 239 DDEAAVEEEEEEKKPKTKKVEKTVWDWELMN 269 (269)
T ss_dssp ---------------------CCCEEEEECC
T ss_pred ccccccccccccccccCCceEEEEeeeEecC
Confidence 11 12222 23567888999999999998
No 15
>3ied_A Heat shock protein; HSP90, chaperone, structural genomics, structura genomics consortium, SGC, stress response; HET: AN2; 2.01A {Plasmodium falciparum}
Probab=100.00 E-value=1.3e-55 Score=456.33 Aligned_cols=209 Identities=51% Similarity=0.817 Sum_probs=187.3
Q ss_pred CcccccchhhHHHHHHHHHHccCCCchHHHHHhHhhHhhHHHhhhhhhccCCCCC-------------------------
Q 003827 79 SGEKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLL------------------------- 133 (793)
Q Consensus 79 ~~e~~~Fq~e~~~Ll~ll~~~LYs~~~vflRELIsNA~DA~~k~r~~~~~~~~~~------------------------- 133 (793)
+.|+|.||||+++||+||+|+||||++||||||||||+|||+|+| +++++++.+
T Consensus 23 ~~e~~~Fqae~~~ll~li~~slYs~keiFlRELISNasDA~dK~r-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (272)
T 3ied_A 23 PVEKYNFKAEVNKVMDIIVNSLYTDKDVFLRELISNASDACDKKR-IILENNKLIKDAEVVTNEEIKNETEKEKTENVNE 101 (272)
T ss_dssp ECEEEECCHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCC--------------------
T ss_pred ccceechHHHHHHHHHHHHhhcCCCHHHHHHHHHHhhHHHHHHHH-HhccChhhhhcccccccccccccccccccccccc
Confidence 568999999999999999999999999999999999999999999 888766433
Q ss_pred ------------CCCCCceEEEEECCCCcEEEEEeCCCCCCHHHHHHHHhhhcccCchhHHHHhhhcccCCCCCcccccc
Q 003827 134 ------------GDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKALKENNDLGADNGLIGQF 201 (793)
Q Consensus 134 ------------~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~eeL~~~L~tIa~Sgt~~f~~~l~~~~~~~~d~~~IGqF 201 (793)
....++.|+|.+|+++++|+|+|||+|||++||.++|++||+||+++|+++++.. ..+..+||||
T Consensus 102 ~~~~~~~~~e~~~~~~~l~I~I~~Dk~~~tLtI~DNGiGMTkeeL~~~LgtIA~SGtk~Fle~l~~~---~~d~~~IGqF 178 (272)
T 3ied_A 102 STDKKENVEEEKNDIKKLIIKIKPDKEKKTLTITDNGIGMDKSELINNLGTIAQSGTAKFLKQIEEG---KADSNLIGQF 178 (272)
T ss_dssp ------------CGGGGCCEEEEEETTTTEEEEEECSCCCCHHHHHHHTTCSCCHHHHHHHHHHHTT---SSCTTCGGGS
T ss_pred ccccccccccccCCCCCcEEEEEEeCCCCEEEEEeCCCCCCHHHHHHHHHHHhhcchhhHHHHhhcc---cccccccCcc
Confidence 2335679999999999999999999999999999999999999999999998741 2567899999
Q ss_pred ccccceecccccEEEEEEecCCCCCeEEEEEccCCceEEEEcc---CCCCCCCCCCeEEEEEecCCCcccCCchhhHHHH
Q 003827 202 GVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADSSSYVIREE---TDPEKLLKRGTQITLYLKEDDKYEFSEPTRIQGL 278 (793)
Q Consensus 202 GIGf~S~F~VadkV~V~Tr~~~~~~~~~w~s~~~~~~~i~~~~---~~~~~~~~~GT~I~L~Lk~d~~~e~~~~~~i~~l 278 (793)
|||||||||||++|+|+|| . ++.+|.|++++++.|+|.+++ ...++..++||+|+||||+++. +|+++++|+++
T Consensus 179 GVGFySaFmVAdkV~V~Sk-~-dd~~~~WeS~g~gsfti~~~~~~~~~~g~~~~~GT~I~L~Lked~~-e~le~~~ik~l 255 (272)
T 3ied_A 179 GVGFYSSFLVSNRVEVYTK-K-EDQIYRWSSDLKGSFSVNEIKKYDQEYDDIKGSGTKIILHLKEECD-EYLEDYKLKEL 255 (272)
T ss_dssp CCGGGGGGGTEEEEEEEEE-S-SSCEEEEEECSSSEEEEEECTTCTTCC--CCSSEEEEEEEECGGGG-GGGSHHHHHHH
T ss_pred cceeheeeccCCEEEEEEc-C-CCceEEEEECCCCCEEEEECcccccccCCCCCCCcEEEEEECCChH-HhcCHHHHHHH
Confidence 9999999999999999999 3 478999999999999998763 0012357899999999999998 99999999999
Q ss_pred HHhhcCCCccCeEecc
Q 003827 279 VKNYSQFVSFPIYTWQ 294 (793)
Q Consensus 279 i~~ys~fi~~pI~l~~ 294 (793)
|++||+|++|||+++.
T Consensus 256 ikkys~fi~~PI~l~~ 271 (272)
T 3ied_A 256 IKKYSEFIKFPIEIWS 271 (272)
T ss_dssp HHHHCTTCCSCEEECC
T ss_pred HHHHHhCCCCCeEEEe
Confidence 9999999999999975
No 16
>3nmq_A Heat shock protein HSP 90-beta; ATPase, chaperone-chaperone inhibitor complex; HET: 7PP; 2.20A {Homo sapiens} SCOP: d.122.1.1
Probab=100.00 E-value=1.4e-54 Score=449.60 Aligned_cols=211 Identities=53% Similarity=0.860 Sum_probs=196.7
Q ss_pred CcccccchhhHHHHHHHHHHccCCCchHHHHHhHhhHhhHHHhhhhhhccCCCCCCCCCCceEEEEECCCCcEEEEEeCC
Q 003827 79 SGEKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTG 158 (793)
Q Consensus 79 ~~e~~~Fq~e~~~Ll~ll~~~LYs~~~vflRELIsNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnG 158 (793)
+.|++.||+|+++||++|+++||||+++|||||||||+||++|+||++++++..+...+.+.|+|.+|+++++|+|.|||
T Consensus 15 ~~e~~~Fqae~~~ll~ll~~~lYs~~~ifLRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~L~I~DnG 94 (239)
T 3nmq_A 15 EVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLTDPSKLDSGKELKIDIIPNPQERTLTLVDTG 94 (239)
T ss_dssp CCEEEECCHHHHHHHHHHHHSCCCCTTHHHHHHHHHHHHHHHHHHHHHHHCGGGGTTCCCCCEEEEEETTTTEEEEEECS
T ss_pred cceeEeehhhHHHHHHHHHHhccCCcHHHHHHHHhChHHHHHHHHHHhccCchhccCCCceEEEEEEeCCccEEEEEeCC
Confidence 46999999999999999999999999999999999999999999999999999887788899999999999999999999
Q ss_pred CCCCHHHHHHHHhhhcccCchhHHHHhhhcccCCCCCccccccccccceecccccEEEEEEecCCCCCeEEEEEccCCce
Q 003827 159 IGMTKEELVDCLGTIAQSGTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADSSS 238 (793)
Q Consensus 159 iGMt~eeL~~~L~tIa~Sgt~~f~~~l~~~~~~~~d~~~IGqFGIGf~S~F~VadkV~V~Tr~~~~~~~~~w~s~~~~~~ 238 (793)
+|||++||.++|++||+||++.|+++++. +.+...||||||||||+||||++|+|+||+.+ +.+|.|++.+++.|
T Consensus 95 iGMt~edL~~~LgtIA~Sgtk~f~e~~~~----~~d~~~IGqFGvGfySaf~vadkv~V~Sk~~~-~~~~~W~s~~~g~f 169 (239)
T 3nmq_A 95 IGMTKADLINNLGTIAKSGTKAFMEALQA----GADISMIGQFGVGFYSAYLVAEKVVVITKHND-DEQYAWESSAGGSF 169 (239)
T ss_dssp CCCCHHHHHTHHHHHHHHHHHHHHHHHHT----TCCGGGGGGGTCGGGGGGGTEEEEEEEEECTT-SCCEEEEECSTTEE
T ss_pred CCCCHHHHHHHHHHHhcccchhhhhhhcc----cCCcccccccCcccccccccCCEEEEEEeeCC-CceeEEEECCCCcE
Confidence 99999999999999999999999999873 35678999999999999999999999999975 77999999999999
Q ss_pred EEEEccCCCCCCCCCCeEEEEEecCCCcccCCchhhHHHHHHhhcCCCccCeEecccccc
Q 003827 239 YVIREETDPEKLLKRGTQITLYLKEDDKYEFSEPTRIQGLVKNYSQFVSFPIYTWQEKSR 298 (793)
Q Consensus 239 ~i~~~~~~~~~~~~~GT~I~L~Lk~d~~~e~~~~~~i~~li~~ys~fi~~pI~l~~~~~~ 298 (793)
+|.+++ ++..++||+|+||||++.. +|+++++|+++|++||+|++|||+++.+|++
T Consensus 170 ti~~~~---~~~~~~GT~I~L~lk~d~~-e~l~~~~i~~lv~kys~fi~~pI~~~~~~~~ 225 (239)
T 3nmq_A 170 TVRADH---GEPIGRGTKVILHLKEDQT-EYLEERRVKEVVKKHSQFIGYPITLYLEKER 225 (239)
T ss_dssp EEEECC---SSCCSSEEEEEEEECGGGG-GGGSHHHHHHHHHHHCTTCSSCEEECCCSCC
T ss_pred EEEecC---CCcCCCCCEEEEEECCChH-HhcCHHHHHHHHHHHHhccCCceEEeeeeec
Confidence 998863 3456899999999999998 9999999999999999999999999887643
No 17
>3o0i_A HSP90AA1 protein; HSP90 heat-shock proteins, chaperone-inhibitor complex; HET: P54; 1.47A {Homo sapiens} PDB: 2fwz_A* 2fwy_A* 2h55_A*
Probab=100.00 E-value=6.3e-51 Score=426.07 Aligned_cols=219 Identities=52% Similarity=0.834 Sum_probs=194.2
Q ss_pred CcccccchhhHHHHHHHHHHccCCCchHHHHHhHhhHhhHHHhhhhhhccCCCCCCCCCCceEEEEECCCCcEEEEEeCC
Q 003827 79 SGEKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTG 158 (793)
Q Consensus 79 ~~e~~~Fq~e~~~Ll~ll~~~LYs~~~vflRELIsNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnG 158 (793)
..|++.||+|+++|+++|+|+||+|+++|||||||||+||++|+||.+++++..+...+.+.|+|.++++.++|+|.|||
T Consensus 36 ~~e~~~Fqaei~~Ll~ll~~~lYs~~~iflRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~I~I~DnG 115 (256)
T 3o0i_A 36 EVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIPNKQDRTLTIVDTG 115 (256)
T ss_dssp CCEEEECCHHHHHHHHHHHHSCCSCTTHHHHHHHHHHHHHHHHHHHHHHHCGGGGTTCCCCCEEEEEETTTTEEEEEECS
T ss_pred cceeEEeEeeHHHHHHHHHHhccCCcHHHHHHHHhChHHHHHHHHHHhccCchhccCCCceEEEEEEcCCceEEEEecCC
Confidence 46899999999999999999999999999999999999999999999999998887788899999999889999999999
Q ss_pred CCCCHHHHHHHHhhhcccCchhHHHHhhhcccCCCCCccccccccccceecccccEEEEEEecCCCCCeEEEEEccCCce
Q 003827 159 IGMTKEELVDCLGTIAQSGTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADSSS 238 (793)
Q Consensus 159 iGMt~eeL~~~L~tIa~Sgt~~f~~~l~~~~~~~~d~~~IGqFGIGf~S~F~VadkV~V~Tr~~~~~~~~~w~s~~~~~~ 238 (793)
+|||++||.++|++||+||++.|++.++. +.+...||+||+||||+|+||++|+|+||+.+ +.+|.|++.+++.|
T Consensus 116 ~GMt~edl~~~l~~ia~S~~~~f~~~L~~----~~~~~~iG~fG~Gf~S~f~Vadkv~V~Sr~~~-~~g~~w~s~gg~~~ 190 (256)
T 3o0i_A 116 IGMTKADLINNLGTIAKSGTKAFMEALQA----GADISMIGQFGVGFYSAYLVAEKVTVITKHND-DEQYAWESSAGGSF 190 (256)
T ss_dssp CCCCHHHHHTHHHHHHHHHHHHHHHHHHT----TCCGGGGGGGTCGGGGGGGTEEEEEEEEECTT-SCEEEEEECSTTEE
T ss_pred CCcCHHHHHHHHHhhccccccchhhhhcc----cCCccccCCCcchHHHhhccCCeEEEEEcCCC-CceEEEEEeccceE
Confidence 99999999999999999999999988862 34678999999999999999999999999976 78999999999999
Q ss_pred EEEEccCCCCCCCCCCeEEEEEecCCCcccCCchhhHHHHHHhhcCCCccCeEecccccccccccccC
Q 003827 239 YVIREETDPEKLLKRGTQITLYLKEDDKYEFSEPTRIQGLVKNYSQFVSFPIYTWQEKSRTIEVEEEE 306 (793)
Q Consensus 239 ~i~~~~~~~~~~~~~GT~I~L~Lk~d~~~e~~~~~~i~~li~~ys~fi~~pI~l~~~~~~~~~~~~~~ 306 (793)
++.+++ ....++||+|+|+||.+.. +|++..+|+++|++||+|++|||+++.+|+++++|++++
T Consensus 191 ~v~~~~---~~~~~~GT~I~l~LK~~~~-e~~e~~~I~~iv~k~s~~l~~PI~~~~~~~~~~~~~~~~ 254 (256)
T 3o0i_A 191 TVRTDT---GEPMGRGTKVILHLKEDQT-EYLEERRIKEIVKKHSQFIGYPITLFVEKERDKEVSDDE 254 (256)
T ss_dssp EEEECC---SSCCSSEEEEEEEECGGGG-GGGCHHHHHHHHHHHCTTCSSCEEECCC-----------
T ss_pred EEeeCC---CCCCCCCcEEEEEEcCcch-hhccHHHHHHHHHHHHhhCCCCeEEeeeeeecccCCCcc
Confidence 998863 2356899999999999998 999999999999999999999999999988888877644
No 18
>3t0h_A Heat shock protein HSP 90-alpha; chaperone, ATPase; 1.20A {Homo sapiens} SCOP: d.122.1.1 PDB: 3r4m_A 3t0z_A* 3t10_A* 3t1k_A* 3t2s_A* 1uyl_A 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A* 1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A* 2vci_A* ...
Probab=100.00 E-value=1.5e-49 Score=411.18 Aligned_cols=218 Identities=51% Similarity=0.832 Sum_probs=192.7
Q ss_pred CcccccchhhHHHHHHHHHHccCCCchHHHHHhHhhHhhHHHhhhhhhccCCCCCCCCCCceEEEEECCCCcEEEEEeCC
Q 003827 79 SGEKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTG 158 (793)
Q Consensus 79 ~~e~~~Fq~e~~~Ll~ll~~~LYs~~~vflRELIsNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnG 158 (793)
..|+++||+|+++|+++|+++||+++.+|||||||||+||++++||.+++++..+...+.+.|+|.++.+..+|+|.|||
T Consensus 8 ~~~~~~Fq~ei~~ll~ll~~~lYs~~~~~lrELi~NA~DA~~k~r~~~~~~~~~~~~~~~i~I~I~~d~~~~~i~V~DnG 87 (228)
T 3t0h_A 8 EVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIPNKQDRTLTIVDTG 87 (228)
T ss_dssp CCEEEECCHHHHHHHHHHHHSCCSCTTHHHHHHHHHHHHHHHHHHHHHTTCGGGGTTCCCCCEEEEEETTTTEEEEEECS
T ss_pred cccceEEEeeHHHHHHHHHHhhcCCcHHHHHHHHHCHHHHHHHHHhhhccCcccccCCCceEEEEEEeCCeeEEEEEeCC
Confidence 46899999999999999999999999999999999999999999999999988877777889999999888999999999
Q ss_pred CCCCHHHHHHHHhhhcccCchhHHHHhhhcccCCCCCccccccccccceecccccEEEEEEecCCCCCeEEEEEccCCce
Q 003827 159 IGMTKEELVDCLGTIAQSGTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADSSS 238 (793)
Q Consensus 159 iGMt~eeL~~~L~tIa~Sgt~~f~~~l~~~~~~~~d~~~IGqFGIGf~S~F~VadkV~V~Tr~~~~~~~~~w~s~~~~~~ 238 (793)
+|||+++|..+|++||+|+++.|.+.++. +.+...||+||+||||+|+||++|+|.||+.+ +.+|.|++.+++.|
T Consensus 88 ~GMs~edl~~~l~~ia~S~~~~f~~~l~~----~~~~~~iG~fG~G~~S~~~vad~v~V~Sr~~~-~~~~~w~~~g~~~~ 162 (228)
T 3t0h_A 88 IGMTKADLINNLGTIAKSGTKAFMEALQA----GADISMIGQFGVGFYSAYLVAEKVTVITKHND-DEQYAWESSAGGSF 162 (228)
T ss_dssp CCCCHHHHHTGGGSCHHHHHHHHHHHHHT----TCCGGGGGGGTCGGGGGGGTEEEEEEEEECTT-SCEEEEEECSTTEE
T ss_pred CCCCHHHHHHHHHhhccccchhhhhhhcc----cCCcccCCCCChhHHHHhccCCEEEEEEecCC-CCcEEEEEcCCceE
Confidence 99999999999999999999999887752 24678999999999999999999999999976 67999999999999
Q ss_pred EEEEccCCCCCCCCCCeEEEEEecCCCcccCCchhhHHHHHHhhcCCCccCeEeccccccccccccc
Q 003827 239 YVIREETDPEKLLKRGTQITLYLKEDDKYEFSEPTRIQGLVKNYSQFVSFPIYTWQEKSRTIEVEEE 305 (793)
Q Consensus 239 ~i~~~~~~~~~~~~~GT~I~L~Lk~d~~~e~~~~~~i~~li~~ys~fi~~pI~l~~~~~~~~~~~~~ 305 (793)
++.+.+ ....++||+|+|+||++.. ||++..+|+++|++||.|++|||+++.+++++++++++
T Consensus 163 ~v~~~~---~~~~~~GT~I~v~Lk~~~~-E~~e~~~i~~iv~~~a~~l~~Pi~~~~~~~~~~~~~~~ 225 (228)
T 3t0h_A 163 TVRTDT---GEPMGRGTKVILHLKEDQT-EYLEERRIKEIVKKHSQFIGYPITLFVEKERDKEVSDD 225 (228)
T ss_dssp EEEECC---SSCCSSEEEEEEEECGGGG-GGGSHHHHHHHHHHHSTTCSSCEEECCC----------
T ss_pred EEeecC---CCCCCCCcEEEEEECCchh-hhhhHHHHHHHHHHHHhhCCCCeEEeecceeeccCCCc
Confidence 998763 2356899999999999998 99999999999999999999999999988777777654
No 19
>2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA, NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A* 1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A* 1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 3o2f_A* 2esa_A*
Probab=100.00 E-value=2.1e-48 Score=405.62 Aligned_cols=212 Identities=53% Similarity=0.874 Sum_probs=177.4
Q ss_pred cccccchhhHHHHHHHHHHccCCCchHHHHHhHhhHhhHHHhhhhhhccCCCCCCCCCCceEEEEECCCCcEEEEEeCCC
Q 003827 80 GEKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGI 159 (793)
Q Consensus 80 ~e~~~Fq~e~~~Ll~ll~~~LYs~~~vflRELIsNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGi 159 (793)
.|++.||+++++|+++|+++||++|++|||||||||+||++|+||+++++++.+.....+.|+|.++.+..+|+|.|||+
T Consensus 9 ~~~~~F~~ei~~L~~ll~~~lys~~~~~lrELI~NA~DA~ak~~~~~~~~~~~~~~~~~~~I~i~~d~~~~~i~I~DnG~ 88 (236)
T 2gqp_A 9 SEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEKNLLHVTDTGV 88 (236)
T ss_dssp TTEECCCHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHHHHHHHHHCTTTTTTCCCCCEEEEEETTTTEEEEEECSC
T ss_pred ccccchhHhHHHHHHHHHHhhcCCchHHHHHHHHhHHHhhhhhhhhcccCcccccCCCceEEEEEEcCCCCEEEEEECCc
Confidence 48999999999999999999999999999999999999999999999999988877788899999988889999999999
Q ss_pred CCCHHHHHHHHhhhcccCchhHHHHhhhcccC-CCCCccccccccccceecccccEEEEEEecCCCCCeEEEEEccCCce
Q 003827 160 GMTKEELVDCLGTIAQSGTSKFLKALKENNDL-GADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADSSS 238 (793)
Q Consensus 160 GMt~eeL~~~L~tIa~Sgt~~f~~~l~~~~~~-~~d~~~IGqFGIGf~S~F~VadkV~V~Tr~~~~~~~~~w~s~~~~~~ 238 (793)
|||++||.++|++||+||++.|+++++...+. ..+...||+|||||||+||||++|+|.||+.+ +.++.|++.+ +.|
T Consensus 89 GMt~edl~~~l~~ia~Sg~~~f~~kl~~~~~~~~~d~~~iG~fGiG~~S~f~va~~v~V~Sr~~~-~~~~~w~~~g-g~~ 166 (236)
T 2gqp_A 89 GMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSKHNN-DTQHIWESDS-NEF 166 (236)
T ss_dssp CCCHHHHHHHHHCC---------------------CHHHHHHTTCGGGGGGGTEEEEEEEEECTT-SCCEEEEESS-SCE
T ss_pred CCCHHHHHHHHhhhcccccHhHHHHhhccccccccchhhcCCCCcchhhHhhcCCEEEEEEeCCC-CceEEEEEeC-CEE
Confidence 99999999999999999999998887631000 14667999999999999999999999999987 4789999998 899
Q ss_pred EEEEccCCCCCCCCCCeEEEEEecCCCcccCCchhhHHHHHHhhcCCCccCeEecccc
Q 003827 239 YVIREETDPEKLLKRGTQITLYLKEDDKYEFSEPTRIQGLVKNYSQFVSFPIYTWQEK 296 (793)
Q Consensus 239 ~i~~~~~~~~~~~~~GT~I~L~Lk~d~~~e~~~~~~i~~li~~ys~fi~~pI~l~~~~ 296 (793)
++.+.. .....++||+|+|+|+++.. +|++..+|+++|++||.|++|||+++.++
T Consensus 167 ~i~~~~--~~~~~~~GT~I~l~Lk~~~~-~~le~~~i~~lv~~~s~~i~~pI~~~~~~ 221 (236)
T 2gqp_A 167 SVIADP--RGNTLGRGTTITLVLKEEAS-DYLELDTIKNLVKKYSQFINFPIYVWSSK 221 (236)
T ss_dssp EEEECT--TCSCSSSEEEEEEEECGGGG-GGGCHHHHHHHHHHHHTTCSSCEEEEEEC
T ss_pred EEEecc--CCCCCCCCeEEEEEECCcch-hhChHHHHHHHHHHHhhhCCCceEEeeee
Confidence 888753 12246799999999999988 99999999999999999999999998754
No 20
>2wer_A ATP-dependent molecular chaperone HSP82; ATPase, ATP-binding, phosphoprotein, stress respo nucleotide-binding; HET: RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A* 2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2yge_A* 2ygf_A* 2akp_A
Probab=100.00 E-value=2.2e-45 Score=379.12 Aligned_cols=214 Identities=51% Similarity=0.829 Sum_probs=192.4
Q ss_pred cccccchhhHHHHHHHHHHccCCCchHHHHHhHhhHhhHHHhhhhhhccCCCCCCCCCCceEEEEECCCCcEEEEEeCCC
Q 003827 80 GEKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGI 159 (793)
Q Consensus 80 ~e~~~Fq~e~~~Ll~ll~~~LYs~~~vflRELIsNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGi 159 (793)
.|++.||+++++|+++|+++||+++.+|||||||||+||++++||.++++++.+...+.+.|+|..+.+..+|+|.|||+
T Consensus 3 ~~~~~f~~~~~~l~~ll~~~lys~~~~~lrELI~NA~DA~a~~~~~~~~~~~~~~~~~~i~I~i~~~~~~~~i~I~DnG~ 82 (220)
T 2wer_A 3 SETFEFQAEITQLMSLIINTVYSNKEIFLREIVSNASDALDKIRYKSLSDPKQLETEPDLFIRITPKPEQKVLEIRDSGI 82 (220)
T ss_dssp CEEEECCHHHHHHHHHHHHHCCSSTTHHHHHHHHHHHHHHHHHHHHHTTCGGGGGGCCCCCEEEEEEGGGTEEEEEECSC
T ss_pred CcceeeeecHHHHHHHHHHhccCCchHHHHHHHHhHHHHHHHHHhhcccCchhccCCCcEEEEEEECCCCCEEEEEEcCC
Confidence 48999999999999999999999999999999999999999999999999887766778889998887788999999999
Q ss_pred CCCHHHHHHHHhhhcccCchhHHHHhhhcccCCCCCccccccccccceecccccEEEEEEecCCCCCeEEEEEccCCceE
Q 003827 160 GMTKEELVDCLGTIAQSGTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADSSSY 239 (793)
Q Consensus 160 GMt~eeL~~~L~tIa~Sgt~~f~~~l~~~~~~~~d~~~IGqFGIGf~S~F~VadkV~V~Tr~~~~~~~~~w~s~~~~~~~ 239 (793)
||++++|.++|++||+||++.|+++++. ..+...||+||+||||+|++|++|+|.|++.+ +.++.|++.+++.|+
T Consensus 83 GMs~edl~~~l~~ia~S~~~~f~~k~~~----~~~~~~iG~fGiG~~s~~~~~~~v~v~S~~~~-~~~~~~~~~~~~~~~ 157 (220)
T 2wer_A 83 GMTKAELINNLGTIAKSGTKAFMEALSA----GADVSMIGQFGVGFYSLFLVADRVQVISKSND-DEQYIWESNAGGSFT 157 (220)
T ss_dssp CCCHHHHHHHTTTSCCTTHHHHHHHHTT----TCCGGGGGGGTCGGGGGGGTEEEEEEEEECTT-SCCEEEEECSSSEEE
T ss_pred CCCHHHHHHHHHhHhcccchhHHHHhhc----cCCcccCCccchhHHHhhhcCCeeEEEEecCC-CceeEEEeCCCCceE
Confidence 9999999999999999999999988873 35678999999999999999999999999976 669999999988998
Q ss_pred EEEccCCCCCCCCCCeEEEEEecCCCcccCCchhhHHHHHHhhcCCCccCeEeccccccccc
Q 003827 240 VIREETDPEKLLKRGTQITLYLKEDDKYEFSEPTRIQGLVKNYSQFVSFPIYTWQEKSRTIE 301 (793)
Q Consensus 240 i~~~~~~~~~~~~~GT~I~L~Lk~d~~~e~~~~~~i~~li~~ys~fi~~pI~l~~~~~~~~~ 301 (793)
+.+.. .....++||+|+|+|++++. +|++..+|+++|++||.|++|||+++.+|+.+++
T Consensus 158 i~~~~--~~~~~~~GT~I~l~Lk~~~~-~~~e~~~i~~~v~~~a~~l~~PI~~~~~~~~~~~ 216 (220)
T 2wer_A 158 VTLDE--VNERIGRGTILRLFLKDDQL-EYLEEKRIKEVIKRHSEFVAYPIQLVVTKEVEKE 216 (220)
T ss_dssp EEECS--SSCCCSSEEEEEEEECTTCG-GGGCHHHHHHHHHHHCTTCCSCEEECCCCCCC--
T ss_pred eeccc--CCCCCCCCeEEEEEECcchH-HhCCHHHHHHHHHHHHhcCCCceEEEeccccccc
Confidence 88752 12246799999999999988 9999999999999999999999999987654443
No 21
>1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP: d.122.1.1 PDB: 1yc3_A* 1yc4_A*
Probab=100.00 E-value=1.6e-45 Score=389.13 Aligned_cols=217 Identities=51% Similarity=0.831 Sum_probs=191.7
Q ss_pred CcccccchhhHHHHHHHHHHccCCCchHHHHHhHhhHhhHHHhhhhhhccCCCCCCCCCCceEEEEECCCCcEEEEEeCC
Q 003827 79 SGEKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTG 158 (793)
Q Consensus 79 ~~e~~~Fq~e~~~Ll~ll~~~LYs~~~vflRELIsNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnG 158 (793)
..+++.||+++++|+++|+++||++|.+|||||||||+||++++||+++++++.+.....+.|+|..+.+..+|+|.|||
T Consensus 44 ~~e~~~F~~ei~~Ll~ll~~~lys~~~~~lrELI~NA~DA~ak~r~~~l~~~~~~~~~~~i~I~i~~d~~~~~I~I~DnG 123 (264)
T 1yc1_A 44 EVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYETLTDPSKLDSGKELHINLIPNKQDRTLTIVDTG 123 (264)
T ss_dssp CEEEEECCHHHHHHHHHHHHCCCSCTTHHHHHHHHHHHHHHHHHHHHHHHCGGGGGGCCCCCEEEEEETTTTEEEEEECS
T ss_pred cceeEEehHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhhccCccccCCCCeEEEEEEECCCeeEEEEEECC
Confidence 35899999999999999999999999999999999999999999999999988777677889999888888899999999
Q ss_pred CCCCHHHHHHHHhhhcccCchhHHHHhhhcccCCCCCccccccccccceecccccEEEEEEecCCCCCeEEEEEccCCce
Q 003827 159 IGMTKEELVDCLGTIAQSGTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADSSS 238 (793)
Q Consensus 159 iGMt~eeL~~~L~tIa~Sgt~~f~~~l~~~~~~~~d~~~IGqFGIGf~S~F~VadkV~V~Tr~~~~~~~~~w~s~~~~~~ 238 (793)
+||++++|.++|++||+||++.|+++++. ..+...||+|||||||+|++|++|+|.||+.+ +.+|.|++.+++.|
T Consensus 124 ~GMs~edL~~~l~~ia~S~~~~f~~~l~~----~~d~~~iG~fGiGf~S~f~va~~v~V~Sr~~~-~~~~~w~~~~~~~~ 198 (264)
T 1yc1_A 124 IGMTKADLINNLGTIAKSGTKAFMEALQA----GADISMIGQFGVGFYSAYLVAEKVTVITKHND-DEQYAWESSAGGSF 198 (264)
T ss_dssp CCCCHHHHHHHHHSCTTSCHHHHHHHHHT----TCCGGGGGGGTCGGGGHHHHEEEEEEEEECTT-SCCEEEEECSTTEE
T ss_pred cCCCHHHHHHHHHhhccccchhhhhhhcc----ccchhhcCCCCCCccccccCCCEEEEEEecCC-CceEEEEEcCCceE
Confidence 99999999999999999999999888863 34678999999999999999999999999987 56899999998899
Q ss_pred EEEEccCCCCCCCCCCeEEEEEecCCCcccCCchhhHHHHHHhhcCCCccCeEecccccccccccc
Q 003827 239 YVIREETDPEKLLKRGTQITLYLKEDDKYEFSEPTRIQGLVKNYSQFVSFPIYTWQEKSRTIEVEE 304 (793)
Q Consensus 239 ~i~~~~~~~~~~~~~GT~I~L~Lk~d~~~e~~~~~~i~~li~~ys~fi~~pI~l~~~~~~~~~~~~ 304 (793)
++.+.+ ....++||+|+|+|+++.. +|++..+|+++|++||.|++|||+++.+++.++++++
T Consensus 199 ~i~~~~---~~~~~~GT~I~l~Lk~~~~-e~~e~~~i~~lv~k~s~fi~~PI~~~~~~~~~~~~~~ 260 (264)
T 1yc1_A 199 TVRTDT---GEPMGRGTKVILHLKEDQT-EYLEERRIKEIVKKHSQFIGYPITLFVEKERDKEVSD 260 (264)
T ss_dssp EEEECC---SSCCSSEEEEEEEECGGGG-GGGSHHHHHHHHHHHTTTCSSCEEECCCC--------
T ss_pred EEeecC---CCCCCCCeEEEEEECCchh-hhhhHHHHHHHHHHHHhhCCCCEEEeeccccccccCC
Confidence 988753 2346899999999999887 9999999999999999999999999998766555544
No 22
>2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A {Escherichia coli}
Probab=100.00 E-value=3.8e-41 Score=350.78 Aligned_cols=208 Identities=45% Similarity=0.767 Sum_probs=186.2
Q ss_pred CcccccchhhHHHHHHHHHHccCCCchHHHHHhHhhHhhHHHhhhhhhccCCCCCCCCCCceEEEEECCCCcEEEEEeCC
Q 003827 79 SGEKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTG 158 (793)
Q Consensus 79 ~~e~~~Fq~e~~~Ll~ll~~~LYs~~~vflRELIsNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnG 158 (793)
..|++.||+++++|+++|+++||++|.+||||||+||+||++++||..++++++...+..+.|+|.++.+...|+|.|||
T Consensus 23 ~~e~~~f~~~i~~L~~~l~~~lys~~~~~lrELI~NA~DA~~~~r~~~~~~~~~~~~~~~~~I~i~~~~~~~~i~I~DnG 102 (235)
T 2ior_A 23 GQETRGFQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDKRTLTISDNG 102 (235)
T ss_dssp EEEEEECCHHHHHHHHHHHHHTGGGTTHHHHHHHHHHHHHHHHHHHHHTSCGGGGTTCCCCCEEEEEETTTTEEEEEECS
T ss_pred ccccEEeehhHHHHHHHHHHhhcCCHHHHHHHHHhCHHHHHHHHHhhhccCccccCCCceEEEEEEEcCCceEEEEEECC
Confidence 45899999999999999999999999999999999999999999999999988776777789999988888899999999
Q ss_pred CCCCHHHHHHHHhhhcccCchhHHHHhhhcccCCCCCccccccccccceecccccEEEEEEecCCC--CCeEEEEEccCC
Q 003827 159 IGMTKEELVDCLGTIAQSGTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRS--DKQYVWEAEADS 236 (793)
Q Consensus 159 iGMt~eeL~~~L~tIa~Sgt~~f~~~l~~~~~~~~d~~~IGqFGIGf~S~F~VadkV~V~Tr~~~~--~~~~~w~s~~~~ 236 (793)
+||+++||..+|++||+||++.|.++++.. ...+...+|+||+||||+|++|++|+|.|++.+. ..++.|.+.+++
T Consensus 103 ~GMs~edl~~~~~~ia~S~~~~f~~~l~~~--~~~~~~~iG~fGiG~~S~~~~~~~v~V~Sr~~~~~~~~~~~w~~~~~~ 180 (235)
T 2ior_A 103 VGMTRDEVIDHLGTIAKSGTKSFLESLGSD--QAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGEKPENGVFWESAGEG 180 (235)
T ss_dssp SCCCHHHHHHHHTTCCCTTHHHHHHHCCSC--HHHHHHHHTTCCCCGGGGGGTEEEEEEEEECTTSCGGGEEEEEECSSS
T ss_pred CCCCHHHHHHHHHHHccccccchhhhhccc--cccccccCCCCChhHHHHHhCcCeEEEEEecCCCCCceeEEEEecCCC
Confidence 999999999999999999999998766410 0123568999999999999999999999999876 569999999988
Q ss_pred ceEEEEccCCCCCCCCCCeEEEEEecCCCcccCCchhhHHHHHHhhcCCCccCeEecc
Q 003827 237 SSYVIREETDPEKLLKRGTQITLYLKEDDKYEFSEPTRIQGLVKNYSQFVSFPIYTWQ 294 (793)
Q Consensus 237 ~~~i~~~~~~~~~~~~~GT~I~L~Lk~d~~~e~~~~~~i~~li~~ys~fi~~pI~l~~ 294 (793)
.|.+.+.. ..++||+|+|+|+++.. +|++..+|+++|++||.|+++||+++.
T Consensus 181 ~~~i~~~~-----~~~~GT~V~v~Lk~~~~-~~~e~~~i~~lv~~ya~~l~~PI~~~~ 232 (235)
T 2ior_A 181 EYTVADIT-----KEDRGTEITLHLREGED-EFLDDWRVRSIISKYSDHIALPVEIEK 232 (235)
T ss_dssp EEEEEEEC-----CCSCEEEEEEEECTTCG-GGGCHHHHHHHHHHHTTSCCSCEEEC-
T ss_pred cEEEeeCC-----CCCCCEEEEEEEcCchh-hhCCHHHHHHHHHHHhccCCCCeEecc
Confidence 89888642 35799999999999888 999999999999999999999999964
No 23
>1sf8_A Chaperone protein HTPG; four helix bundle dimerization interface, exposed amphipathic helix, three stranded beta sheet; 2.60A {Escherichia coli} SCOP: d.271.1.1
Probab=99.98 E-value=9.4e-33 Score=259.90 Aligned_cols=115 Identities=26% Similarity=0.422 Sum_probs=105.2
Q ss_pred HHHHHHHHHHhccceeEEEEeecCCCCCeEEEeCCCCccHHHHHHHHHHhcCCCCcccccccceeEEeCCCChHHHHHHH
Q 003827 617 NLLCDWIKQQLGDKVAKVQVSKRLSSSPCVLVSGKFGWSANMERLMKAQALGDTSSLEFMRGRRILEINPDHPIVKDLNA 696 (793)
Q Consensus 617 ~~L~~~lk~~L~~kV~~V~vS~RL~~sP~~lv~~e~g~s~~Merimkaq~~~d~~~~~~~~~kk~LEINp~HpLIk~L~~ 696 (793)
..+|+|+|++||++|++|++|+||++||||||++++|||++|||||++|+++ ++..+++|||||+||||++|.+
T Consensus 11 ~~~~~~~K~~L~dkV~~V~vS~RL~~sPa~lv~~e~g~s~~Merimka~~~~------~~~~k~~LEINp~HplIk~L~~ 84 (126)
T 1sf8_A 11 GSFIDRVKALLGERVKDVRLTHRLTDTPAIVSTDADEMSTQMAKLFAAAGQK------VPEVKYIFELNPDHVLVKRAAD 84 (126)
T ss_dssp -CHHHHHHHHHGGGSSEEEECCCCSSCCEEEECCTTSCCHHHHHHHHTTTSC------CCCCCCEEEECTTSHHHHHHHH
T ss_pred hHHHHHHHHHhcCcccEEEEeecccCCCEEEEecCcccCHHHHHHHHHhccc------cccCCeeeeECCCCHHHHHHHH
Confidence 3589999999999999999999999999999999999999999999998532 3568999999999999999976
Q ss_pred hhhcCCCchHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Q 003827 697 ACKNAPDSTDAKRAVDLLYDTALISSGFTPDSPADLGNKIYEMMA 741 (793)
Q Consensus 697 ~~~~~~~d~~~~~l~~lLyd~ALL~sG~~leDp~~fa~ri~~LL~ 741 (793)
. ++++.+++++++|||||+|++||+++||+.|++|+++||.
T Consensus 85 ~----~~~~~~k~l~~lLyd~AlL~~G~~leDp~~F~~Ri~~ll~ 125 (126)
T 1sf8_A 85 T----EDEAKFSEWVELLLDQALLAERGTLEDPNLFIRRMNQLLV 125 (126)
T ss_dssp C----CSHHHHHHHHHHHHHHHHHHHHSCCSSHHHHHHHHHHHHH
T ss_pred h----cChHHHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHh
Confidence 3 3567799999999999999999999999999999999985
No 24
>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A*
Probab=99.87 E-value=8.9e-22 Score=214.81 Aligned_cols=279 Identities=18% Similarity=0.241 Sum_probs=183.2
Q ss_pred HccCCCchHHHHHhHhhHhhHHHhhhhhhccCCCCCCCCCCceEEEEECCC-CcEEEEEeCCCCCCHHHHHHHHhhhccc
Q 003827 98 HSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPE-NGTITITDTGIGMTKEELVDCLGTIAQS 176 (793)
Q Consensus 98 ~~LYs~~~vflRELIsNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~-~~~l~I~DnGiGMt~eeL~~~L~tIa~S 176 (793)
-..+.++..+|+|||+||+||.. ..|+|.++.+ ...|+|.|||+||+++++...+.++++|
T Consensus 19 gevi~~~~~~v~ELi~NaidA~a------------------~~I~I~i~~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~ts 80 (333)
T 1b63_A 19 GEVVERPASVVKELVENSLDAGA------------------TRIDIDIERGGAKLIRIRDNGCGIKKDELALALARHATS 80 (333)
T ss_dssp HHHCSSHHHHHHHHHHHHHHTTC------------------SEEEEEEEGGGTSEEEEEECSCCCCGGGHHHHHSTTCCS
T ss_pred CCchhCHHHHHHHHHHHHHHCCC------------------CeEEEEEEeCCceEEEEEEcCCCcCHHHHHHhhhccccc
Confidence 45567899999999999999952 2566666544 3689999999999999999999999887
Q ss_pred CchhHHHHhhhcccCCCCCccccccccccceecccccEEEEEEecCCCCCeEEEEEccCC-ceEEEEccCCCCCCCCCCe
Q 003827 177 GTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADS-SSYVIREETDPEKLLKRGT 255 (793)
Q Consensus 177 gt~~f~~~l~~~~~~~~d~~~IGqFGIGf~S~F~VadkV~V~Tr~~~~~~~~~w~s~~~~-~~~i~~~~~~~~~~~~~GT 255 (793)
....+ +.+. ....+|++|+|++|+++++ +++|+|++.+...+|.|...|+. ...+.+. ..++||
T Consensus 81 K~~~~-~d~~-------~~~~~G~~G~gl~si~~vs-~l~v~s~~~~~~~~~~~~~~g~~~~~~~~~~------~~~~GT 145 (333)
T 1b63_A 81 KIASL-DDLE-------AIISLGFRGEALASISSVS-RLTLTSRTAEQQEAWQAYAEGRDMNVTVKPA------AHPVGT 145 (333)
T ss_dssp SCCSH-HHHH-------TCCSSCCSSCHHHHHHTTS-EEEEEEECTTCSSEEEEEEETTTTEEEEEEE------CCCSEE
T ss_pred Ccccc-chhh-------hccccCccccchhhhhcCC-cEEEEEecCCCceEEEEEEcCCcceEeeecc------cCCCCC
Confidence 32211 1111 2356899999999999998 89999999876668888777654 3444443 357999
Q ss_pred EEEEE------------ecCCCcccCCchhhHHHHHHhhcCCCccCeEecccccccccccccCCCCCCCCCccccccccc
Q 003827 256 QITLY------------LKEDDKYEFSEPTRIQGLVKNYSQFVSFPIYTWQEKSRTIEVEEEEKPEEGEEQPEGEKKTKK 323 (793)
Q Consensus 256 ~I~L~------------Lk~d~~~e~~~~~~i~~li~~ys~fi~~pI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (793)
+|+++ ++.... +| .+|.+++++|+.. ...|.+
T Consensus 146 ~V~v~~Lf~n~P~r~kflk~~~~-e~---~~i~~~~~~~al~-~p~v~~------------------------------- 189 (333)
T 1b63_A 146 TLEVLDLFYNTPARRKFLRTEKT-EF---NHIDEIIRRIALA-RFDVTI------------------------------- 189 (333)
T ss_dssp EEEEESTTTTCHHHHHTCCCHHH-HH---HHHHHHHHHHHHH-CTTCEE-------------------------------
T ss_pred EEEEecccccchhhhhhhccHHH-HH---HHHHHHHHHHhcc-CCCcEE-------------------------------
Confidence 99998 222222 22 6889999999952 222333
Q ss_pred ccccccccceeeecCCCcccccCCCCCCHHHHHHHHHHHhc-ccCCCcceeeecccceeEEEEEEEeeCCCCCCcccccc
Q 003827 324 TTKTEKYWDWELANETKPIWMRNPKEIEKDEYHEFYKKTFN-EFLDPLAYTHFTTEGEVEFRSVLYIPGMGPLNNEEIMN 402 (793)
Q Consensus 324 ~~~~~~~~~~~~~N~~~~iW~r~~~~v~~eey~~fyk~~~~-~~~~pl~~~h~~~eg~~~~~~ll~iP~~~p~~~~~~~~ 402 (793)
.+.++++++|..++.. ....+.+++..+++ .+...+..++...++ +.+.|++..|... +
T Consensus 190 ----------~l~~ng~~~~~~~~~~-~~~~~~~~i~~i~G~~~~~~li~i~~~~~~-~~v~G~i~~p~~~--------~ 249 (333)
T 1b63_A 190 ----------NLSHNGKIVRQYRAVP-EGGQKERRLGAICGTAFLEQALAIEWQHGD-LTLRGWVADPNHT--------T 249 (333)
T ss_dssp ----------EEEETTEEEEEECCCC-TTCCTHHHHHHHHCHHHHHHEEEEEEEETT-EEEEEEEECGGGC--------C
T ss_pred ----------EEEECCEEEEecCCCC-CCchHHHHHHHHhChhhHhheEEEEecCCC-EEEEEEEEcCccc--------c
Confidence 2223444555544421 12234556666664 334456666666654 8999988888742 2
Q ss_pred cc-ccceEEEeeeeeeccCC---------CCCCCccc---ccccceeecCCCCCCccc---HHhh--hccHHHHHHHHHH
Q 003827 403 PK-TKNIRLYVKRVFISDDF---------DGELFPRY---LSFVKGVVDSDDLPLNVS---REIL--QESRIVRIMRKRL 464 (793)
Q Consensus 403 ~~-~~~i~LYv~rVfI~D~~---------~~~LlP~w---l~FvrGVVDS~DLpLNvS---RE~L--Q~~~~l~~Irk~l 464 (793)
.. +..+.+|||+++|.+.. . .++|.- ..++..-+|.+.+-.||. ||.. ++..++..|++.|
T Consensus 250 ~~~~~~~~~fvNgR~V~~~~l~~ai~~~y~-~~l~~~~~P~~~l~l~~~p~~vDvNvhP~K~ev~f~~~~~v~~~i~~~i 328 (333)
T 1b63_A 250 PALAEIQYCYVNGRMMRDRLINHAIRQACE-DKLGADQQPAFVLYLEIDPHQVDVNVHPAKHEVRFHQSRLVHDFIYQGV 328 (333)
T ss_dssp TTGGGCEEEEETTEECCCHHHHHHHHHHHH-HHSSSCCCCCEEEEEECCGGGEECTTSTTCCCCEETTHHHHHHHHHHHH
T ss_pred CCCCCcEEEEECCEEecCHHHHHHHHHHHH-hhccCCCCcEEEEEEEeCchhccceECCCcCEEEeCCHHHHHHHHHHHH
Confidence 33 57899999999998742 1 233431 235566677777777873 3433 2334555555544
Q ss_pred HH
Q 003827 465 VR 466 (793)
Q Consensus 465 ~~ 466 (793)
.+
T Consensus 329 ~~ 330 (333)
T 1b63_A 329 LS 330 (333)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 25
>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A*
Probab=99.81 E-value=4.4e-20 Score=203.59 Aligned_cols=166 Identities=19% Similarity=0.166 Sum_probs=103.2
Q ss_pred hHHHHHHHHHHccCCC-----chHHHHHhHhhHhhHHHhhhhhhccCCCCCCCCCCceEEEEECC-CCcEEEEEeCCCCC
Q 003827 88 EVSRLMDLIVHSLYSH-----KEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDP-ENGTITITDTGIGM 161 (793)
Q Consensus 88 e~~~Ll~ll~~~LYs~-----~~vflRELIsNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~-~~~~l~I~DnGiGM 161 (793)
-|+.|.+.++++|+++ +..+|+|||+||+||. ...|.|.+.. +...|+|.|||+||
T Consensus 14 ~I~~L~~~~~~~i~agevi~~~~~vl~eLv~NAiDA~------------------a~~I~I~i~~~~~~~I~V~DnG~Gi 75 (365)
T 1h7s_A 14 AIKPIDRKSVHQICSGQVVLSLSTAVKELVENSLDAG------------------ATNIDLKLKDYGVDLIEVSDNGCGV 75 (365)
T ss_dssp ---------------CEEECCHHHHHHHHHHHHHHTT------------------CSEEEEEEEGGGTSEEEEEECSCCC
T ss_pred hhccCCHHHHHHhcCCCchhhHHHHHHHHHHHHHHCC------------------CCEEEEEEEeCCcEEEEEEECCCCc
Confidence 3788888889999887 5889999999999994 2256666543 34689999999999
Q ss_pred CHHHHHHHHhhhcccCchhHHHHhhhcccCCCCCccccccccccceecccccEEEEEEecCCCCCeEEEEEccCCceEEE
Q 003827 162 TKEELVDCLGTIAQSGTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADSSSYVI 241 (793)
Q Consensus 162 t~eeL~~~L~tIa~Sgt~~f~~~l~~~~~~~~d~~~IGqFGIGf~S~F~VadkV~V~Tr~~~~~~~~~w~s~~~~~~~i~ 241 (793)
+++++...+.++++|.... .. ........|.+|+|++|++++| +|+|+||+.+...+|.|...++|.+...
T Consensus 76 ~~~~l~~~f~~~~tsK~~~----~~----dl~~i~s~G~rG~gl~si~~vs-~v~v~t~~~~~~~~~~~~~~~~G~~~~~ 146 (365)
T 1h7s_A 76 EEENFEGLTLKHHTSKIQE----FA----DLTQVETFGFRGEALSSLCALS-DVTISTCHASAKVGTRLMFDHNGKIIQK 146 (365)
T ss_dssp CGGGSGGGGC--------------C----CTTCSEEESSSSSHHHHHHHHS-EEEEEEECTTCSSCEEEEECTTSCEEEE
T ss_pred CHHHHHHHhhhcccccccc----cc----chhcccccCCCCchhhhhhhhc-cEEEEEccCCCcceEEEEEcCCCceEee
Confidence 9999999998888762110 00 0011234799999999999998 9999999987667999998755665432
Q ss_pred EccCCCCCCCCCCeEEEEE-ecCCCc--c-cCC-----chhhHHHHHHhhcCC
Q 003827 242 REETDPEKLLKRGTQITLY-LKEDDK--Y-EFS-----EPTRIQGLVKNYSQF 285 (793)
Q Consensus 242 ~~~~~~~~~~~~GT~I~L~-Lk~d~~--~-e~~-----~~~~i~~li~~ys~f 285 (793)
.. ...++||+|+++ |-.... . +|+ +..+|.+++++|+-+
T Consensus 147 ~~-----~~~~~GT~V~v~~LF~n~P~R~k~flk~~~~e~~~i~~~v~~~al~ 194 (365)
T 1h7s_A 147 TP-----YPRPRGTTVSVQQLFSTLPVRHKEFQRNIKKEYAKMVQVLHAYCII 194 (365)
T ss_dssp EE-----CCCCSEEEEEEESTTTTSHHHHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred cc-----cCCCCCcEEEEeecccccchhhhhhccchHHHHHHHHHhhhhhhhc
Confidence 21 135799999997 321110 0 122 236789999999964
No 26
>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens}
Probab=99.79 E-value=2.6e-19 Score=195.57 Aligned_cols=283 Identities=18% Similarity=0.201 Sum_probs=168.8
Q ss_pred HHHHH-HHccCCCchHHHHHhHhhHhhHHHhhhhhhccCCCCCCCCCCceEEEEECCC-CcEEEEEeCCCCCCHHHHHHH
Q 003827 92 LMDLI-VHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPE-NGTITITDTGIGMTKEELVDC 169 (793)
Q Consensus 92 Ll~ll-~~~LYs~~~vflRELIsNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~-~~~l~I~DnGiGMt~eeL~~~ 169 (793)
+.+.| +......+..+|.|||+||+||. ...|.|.++.+ ...|+|.|||+||+++++...
T Consensus 16 ~~~~Iaagevi~~~~~vv~eLv~NAidA~------------------a~~I~I~i~~~~~~~I~V~DnG~GI~~~~l~~~ 77 (348)
T 3na3_A 16 VVNRIAAGEVIQRPANAIKEMIENCLDAK------------------STSIQVIVKEGGLKLIQIQDNGTGIRKEDLDIV 77 (348)
T ss_dssp HHHHHHHHHHCCSHHHHHHHHHHHHHHTT------------------CSEEEEEEEGGGTSEEEEEECSCCCCGGGGGTT
T ss_pred HHHhhcccCcccCHHHHHHHHHHHHHHcC------------------CCEEEEEEEeCCEEEEEEEECCcCcChHHhhhh
Confidence 33444 34556778999999999999993 22566655444 357999999999999999877
Q ss_pred HhhhcccCchhHHHHhhhcccCCCCCccccccccccceecccccEEEEEEecCCCCCeEEEEEccCCce-EEEEccCCCC
Q 003827 170 LGTIAQSGTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADSSS-YVIREETDPE 248 (793)
Q Consensus 170 L~tIa~Sgt~~f~~~l~~~~~~~~d~~~IGqFGIGf~S~F~VadkV~V~Tr~~~~~~~~~w~s~~~~~~-~i~~~~~~~~ 248 (793)
+..+++|--..+ +. .......|.+|+|++|+.+|| +++|+||+.++..+|.|...++... .+.+.
T Consensus 78 ~~~~~tsK~~~~-~d-------l~~i~s~GfrGeaL~Si~avs-~l~v~sr~~~~~~~~~~~~~~G~~~~~~~~~----- 143 (348)
T 3na3_A 78 CERFTTSKLQSF-ED-------LASISTYGFRGEALASISHVA-HVTITTKTADGKCAYRASYSDGKLKAPPKPC----- 143 (348)
T ss_dssp TSTTCCSSCCCC-----------------CCTTCHHHHHHHSS-EEEEEEECTTCSSEEEEEEETTEESSCCEEE-----
T ss_pred hccccccccCcc-hh-------hhccccCCcCChHHHHhhccc-EEEEEEEECCCCceEEEEEeCCEEeeeeeEe-----
Confidence 666666521111 00 011245799999999999998 8999999988778999988764321 23333
Q ss_pred CCCCCCeEEEEE------------ecCCCcccCCchhhHHHHHHhhcCCCccCeEecccccccccccccCCCCCCCCCcc
Q 003827 249 KLLKRGTQITLY------------LKEDDKYEFSEPTRIQGLVKNYSQFVSFPIYTWQEKSRTIEVEEEEKPEEGEEQPE 316 (793)
Q Consensus 249 ~~~~~GT~I~L~------------Lk~d~~~e~~~~~~i~~li~~ys~fi~~pI~l~~~~~~~~~~~~~~~~~~~~~~~~ 316 (793)
..++||+|++. |+.... | ..+|.+++++|+- +..-|.+.
T Consensus 144 -~~~~GTtV~v~~LF~n~P~R~k~lk~~~~-e---~~~i~~~l~~~Al-~~p~v~f~----------------------- 194 (348)
T 3na3_A 144 -AGNQGTQITVEDLFYNIATRRKALKNPSE-E---YGKILEVVGRYSV-HNAGISFS----------------------- 194 (348)
T ss_dssp -CCCSEEEEEEESTTTTCHHHHHTSCCHHH-H---HHHHHHHHHHHHH-HCTTCEEE-----------------------
T ss_pred -cCCCCcEEEECcccccCchhhhhccccHH-H---HHHHHHHHHHHHh-hCCCeEEE-----------------------
Confidence 35799999996 443322 3 3689999999985 22223331
Q ss_pred cccccccccccccccceeeecCCCcc--cccCCCCCCHHHHHHHHHHHhc-ccCCCcceeeecccc-eeEEEEEEEeeCC
Q 003827 317 GEKKTKKTTKTEKYWDWELANETKPI--WMRNPKEIEKDEYHEFYKKTFN-EFLDPLAYTHFTTEG-EVEFRSVLYIPGM 392 (793)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~N~~~~i--W~r~~~~v~~eey~~fyk~~~~-~~~~pl~~~h~~~eg-~~~~~~ll~iP~~ 392 (793)
+.++++.. |.-.+. ..+.+....+++ .+...|..++...++ .+.++|++.-|..
T Consensus 195 ------------------l~~~g~~~~~~~~~~~----~~~~~~i~~i~G~~~~~~l~~v~~~~~~~~~~i~G~is~p~~ 252 (348)
T 3na3_A 195 ------------------VKKQGETVADVRTLPN----ASTVDNIRSIFGNAVSRELIEIGCEDKTLAFKMNGYISNANY 252 (348)
T ss_dssp ------------------EEETTCSSCSEECCTT----CCHHHHHHHHHCHHHHTTEEEEEEEEGGGTEEEEEEEECSSC
T ss_pred ------------------EEECCEEEEEeecCCC----CCHHHHHHHHhChHhHhhcEEEEeecCCccEEEEEEEeCCcc
Confidence 22222222 221221 124455666664 455666666665543 4889998887864
Q ss_pred CCCCccccccccccceEEEeeeeeeccCC---------CCCCCcc--c-ccccceeecCCCCCCccc---HHhh--hccH
Q 003827 393 GPLNNEEIMNPKTKNIRLYVKRVFISDDF---------DGELFPR--Y-LSFVKGVVDSDDLPLNVS---REIL--QESR 455 (793)
Q Consensus 393 ~p~~~~~~~~~~~~~i~LYv~rVfI~D~~---------~~~LlP~--w-l~FvrGVVDS~DLpLNvS---RE~L--Q~~~ 455 (793)
. .++..+.+|||+++|.+.. . .++|. | ..|+.=-+|.+.+-.||. ||.. .+..
T Consensus 253 ~---------~~~~~q~~fVNgR~v~~~~l~~ai~~~y~-~~l~~~~~P~~~L~l~~~p~~vDVNvhP~K~eV~f~~e~~ 322 (348)
T 3na3_A 253 S---------VKKCIFLLFINHRLVESTSLRKAIETVYA-AYLPKNTHPFLYLSLEISPQNVDVNVHPTKHEVHFLHEES 322 (348)
T ss_dssp C---------BSSCEEEEEETTEECCCTTHHHHHHHHHH-TTSCTTCBCEEEEEEECC----------------------
T ss_pred C---------CCcccEEEEECCeEecCHHHHHHHHHHHH-HhCcCCCceEEEEEEEeChhheeeeeCCCcCEEEEcCHHH
Confidence 2 1234689999999998874 3 56775 2 334555678888888987 7754 4446
Q ss_pred HHHHHHHHHHHH
Q 003827 456 IVRIMRKRLVRK 467 (793)
Q Consensus 456 ~l~~Irk~l~~k 467 (793)
++..|++.|-+.
T Consensus 323 i~~~i~~~v~~~ 334 (348)
T 3na3_A 323 ILERVQQHIESK 334 (348)
T ss_dssp CTHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666666655443
No 27
>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae}
Probab=99.79 E-value=1.6e-19 Score=198.85 Aligned_cols=284 Identities=17% Similarity=0.141 Sum_probs=174.9
Q ss_pred HccCCCchHHHHHhHhhHhhHHHhhhhhhccCCCCCCCCCCceEEEEECC-CCcEEEEEeCCCCCCHHHHHHHHhhhccc
Q 003827 98 HSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDP-ENGTITITDTGIGMTKEELVDCLGTIAQS 176 (793)
Q Consensus 98 ~~LYs~~~vflRELIsNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~-~~~~l~I~DnGiGMt~eeL~~~L~tIa~S 176 (793)
......+..+|+|||+||+||. ...|.|.+.. +...|+|.|||+||+++++...+..+++|
T Consensus 20 gevi~~~~~vv~eLv~NaiDA~------------------a~~I~I~i~~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~ts 81 (367)
T 3h4l_A 20 GQVITDLTTAVKELVDNSIDAN------------------ANQIEIIFKDYGLESIECSDNGDGIDPSNYEFLALKHYTS 81 (367)
T ss_dssp HHHCCSHHHHHHHHHHHHHHTT------------------CSEEEEEEETTTTSEEEEEECSCCCCGGGTTTTTCCEEC-
T ss_pred CCcccCHHHHHHHHHHHHHHCC------------------CCEEEEEEEeCCEEEEEEEECCCCcChhHhccceeccccC
Confidence 3344568889999999999994 2256666633 34689999999999999998776666665
Q ss_pred CchhHHHHhhhcccCCCCCccccccccccceecccccEEEEEEecCCCCCeEEEEEccCCceEE-EEccCCCCCCCCCCe
Q 003827 177 GTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADSSSYV-IREETDPEKLLKRGT 255 (793)
Q Consensus 177 gt~~f~~~l~~~~~~~~d~~~IGqFGIGf~S~F~VadkV~V~Tr~~~~~~~~~w~s~~~~~~~i-~~~~~~~~~~~~~GT 255 (793)
....+ . ........|.+|+|++|+++|| +|+|+||+.+ +.+|.|...++|.+.. .+. ..++||
T Consensus 82 K~~~~----~----Dl~~i~t~GfrGeaL~Si~avS-~l~V~sr~~~-~~~~~~~~~~~G~~~~~~~~------~~~~GT 145 (367)
T 3h4l_A 82 KIAKF----Q----DVAKVQTLGFRGEALSSLCGIA-KLSVITTTSP-PKADKLEYDMVGHITSKTTT------SRNKGT 145 (367)
T ss_dssp ----------------CCCCEEEETTHHHHHHHHSS-EEEEEEESST-TCEEEEEECTTCCEEEEEEE------CCSSEE
T ss_pred cCCch----h----hhhhhhccCccchHHHHhhccC-EEEEEEEECC-CCEEEEEEcCCCcEEeeccc------cCCCCe
Confidence 22111 0 0012245688899999999998 7999999987 7899999875566533 222 357999
Q ss_pred EEEEE-------------ecCCCcccCCchhhHHHHHHhhcCCCccCeEecccccccccccccCCCCCCCCCcccccccc
Q 003827 256 QITLY-------------LKEDDKYEFSEPTRIQGLVKNYSQFVSFPIYTWQEKSRTIEVEEEEKPEEGEEQPEGEKKTK 322 (793)
Q Consensus 256 ~I~L~-------------Lk~d~~~e~~~~~~i~~li~~ys~fi~~pI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (793)
+|++. +|.... || .+|.+++++|+-. ..-|.+..... . .
T Consensus 146 tV~v~~LF~n~P~R~k~flk~~~~-e~---~~i~~~l~~~Al~-~p~v~~~l~~~------~-~---------------- 197 (367)
T 3h4l_A 146 TVLVSQLFHNLPVRQKEFSKTFKR-QF---TKCLTVIQGYAII-NAAIKFSVWNI------T-P---------------- 197 (367)
T ss_dssp EEEEESTTTTCHHHHHHHHTTHHH-HH---HHHHHHHHHHHHH-CTTCEEEEEEE------C-T----------------
T ss_pred EEEEchhhccCchhhhhhccchHH-HH---HHHHHHHHHHHhh-CCCeEEEEEEc------C-C----------------
Confidence 99994 454433 33 5899999999852 22344322100 0 0
Q ss_pred cccccccccceeeecCCCcccccCCCCCCHHHHHHHHHHHhc-ccCCCcceeeec----------------------ccc
Q 003827 323 KTTKTEKYWDWELANETKPIWMRNPKEIEKDEYHEFYKKTFN-EFLDPLAYTHFT----------------------TEG 379 (793)
Q Consensus 323 ~~~~~~~~~~~~~~N~~~~iW~r~~~~v~~eey~~fyk~~~~-~~~~pl~~~h~~----------------------~eg 379 (793)
-.+.+.+|..++. ....+....+++ .+...|..+... ..+
T Consensus 198 -------------~~~~~~~~~t~~~----~~~~~~i~~i~G~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (367)
T 3h4l_A 198 -------------KGKKNLILSTMRN----SSMRKNISSVFGAGGMRGLEEVDLVLDLNPFKNRMLGKYTDDPDFLDLDY 260 (367)
T ss_dssp -------------TSCEEEEEECCSS----CCHHHHHHHHHCTTTTTTEEEEEEEEECGGGCCCCC------------CC
T ss_pred -------------CCcceEEEECCCC----CCHHHHHHHHhCHHHHhccEEEecccccccccccccccccccccccccCC
Confidence 0011123332222 123456666764 455666655551 223
Q ss_pred eeEEEEEEEeeCCCCCCccccccccccceEEEeeeeeeccCC---------CCCCCc-cc-ccccceeecCCCCCCccc-
Q 003827 380 EVEFRSVLYIPGMGPLNNEEIMNPKTKNIRLYVKRVFISDDF---------DGELFP-RY-LSFVKGVVDSDDLPLNVS- 447 (793)
Q Consensus 380 ~~~~~~ll~iP~~~p~~~~~~~~~~~~~i~LYv~rVfI~D~~---------~~~LlP-~w-l~FvrGVVDS~DLpLNvS- 447 (793)
.+.++|++.-|.... .+..+..+.+|||+++|.+.. . .+++ .| +.|+.=-+|.+.+-.||.
T Consensus 261 ~~~i~G~is~p~~~~------~r~~~~~q~~fVNgR~v~~~~l~~ai~~~y~-~~~~~~~P~~~L~l~~~p~~vDVNVhP 333 (367)
T 3h4l_A 261 KIRVKGYISQNSFGC------GRNSKDRQFIYVNKRPVEYSTLLKCCNEVYK-TFNNVQFPAVFLNLELPMSLIDVNVTP 333 (367)
T ss_dssp EEEEEEEEECCSTTC------SBSSSSSEEEEETTEEECCHHHHHHHHHHHH-TTCSSCBCCEEEEEECCGGGEECCCSS
T ss_pred cEEEEEEEeCCcccc------cCCCCCcEEEEECCCEecCHHHHHHHHHHHH-hcCCCCCcEEEEEEEcChHHcceeECC
Confidence 588889777776420 244568899999999998653 1 2222 12 223333456667777887
Q ss_pred --HHhh--hccHHHHHHHHHHHHH
Q 003827 448 --REIL--QESRIVRIMRKRLVRK 467 (793)
Q Consensus 448 --RE~L--Q~~~~l~~Irk~l~~k 467 (793)
||.. .+..++..|++.|.+.
T Consensus 334 ~K~eV~f~~e~~i~~~i~~~l~~~ 357 (367)
T 3h4l_A 334 DKRVILLHNERAVIDIFKTTLSDY 357 (367)
T ss_dssp STTCCEETTHHHHHHHHHHHHHHH
T ss_pred CCCEEEEcCHHHHHHHHHHHHHHH
Confidence 7765 3445666666555443
No 28
>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=99.19 E-value=3.4e-10 Score=125.74 Aligned_cols=247 Identities=15% Similarity=0.118 Sum_probs=148.5
Q ss_pred hHHHHHhHhhHhhHHHhhhhhhccCCCCCCCCCCceEEEEECCCCcEEEEEeCCCCCCHHH--------HHHHHhh-hcc
Q 003827 105 EVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEE--------LVDCLGT-IAQ 175 (793)
Q Consensus 105 ~vflRELIsNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~ee--------L~~~L~t-Ia~ 175 (793)
...|.|||.||+||... .....|.|.++.+ +.|+|+|||.||+.++ +...|+. +|.
T Consensus 33 ~~lv~ElvdNsiD~a~~--------------g~a~~I~V~i~~~-g~I~V~DnG~GIp~~~~~~~~~~~~e~v~~~lhag 97 (390)
T 1s16_A 33 NHLGQEVIDNSVDEALA--------------GHAKRVDVILHAD-QSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAG 97 (390)
T ss_dssp HHHHHHHHHHHHHHHHT--------------TCCSEEEEEECTT-SCEEEEECSSCCCCSBCTTTCSBHHHHHHHCTTEE
T ss_pred HHHHHHHHHHHHHHHhc--------------CCCCEEEEEEecC-CEEEEEECCCCcCcccccccCcchhhheeeeeccc
Confidence 57899999999999521 1245788888765 4899999999999988 5656766 443
Q ss_pred cCchhHHHHhhhcccCCCCCccccccccccceecccccEEEEEEecCCCCCeEEEEEccCCc-eEEEEccCCCCCCCCCC
Q 003827 176 SGTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADSS-SYVIREETDPEKLLKRG 254 (793)
Q Consensus 176 Sgt~~f~~~l~~~~~~~~d~~~IGqFGIGf~S~F~VadkV~V~Tr~~~~~~~~~w~s~~~~~-~~i~~~~~~~~~~~~~G 254 (793)
| + +.. ......-|..|+|..++-.++.+++|+|+..+ ..|.....++.. ..+.+.. .....++|
T Consensus 98 s-K------f~~----~~~~~sgGl~GvGls~vnalS~~l~v~~~r~g--~~~~~~~~~G~~~~~~~~~g--~~~~~~~G 162 (390)
T 1s16_A 98 G-K------FSN----KNYQFSGGLHGVGISVVNALSKRVEVNVRRDG--QVYNIAFENGEKVQDLQVVG--TCGKRNTG 162 (390)
T ss_dssp S-C------SSS----SSCSSCSCCSSCHHHHHHHTEEEEEEEEEETT--EEEEEEEETTEEEEEEEEEE--ECCTTCCE
T ss_pred C-C------cCC----CcccccCCccccchHHHHHhhcccEEEEEECC--cEEEEEEeCCcccccceecc--cccCCCCc
Confidence 3 1 211 11123568899999999999999999999643 455444443311 1122221 00012689
Q ss_pred eEEEEEecCCCcccC----CchhhHHHHHHhhcCC-CccCeEecccccccccccccCCCCCCCCCccccccccccccccc
Q 003827 255 TQITLYLKEDDKYEF----SEPTRIQGLVKNYSQF-VSFPIYTWQEKSRTIEVEEEEKPEEGEEQPEGEKKTKKTTKTEK 329 (793)
Q Consensus 255 T~I~L~Lk~d~~~e~----~~~~~i~~li~~ys~f-i~~pI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (793)
|+|++. ++.. -| .+...|.+.++.++-. -..-|.+..+..
T Consensus 163 T~V~f~--Pd~~-~F~~~~~e~~~l~~rl~~lA~lnpgv~i~l~d~~~-------------------------------- 207 (390)
T 1s16_A 163 TSVHFW--PDET-FFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEIN-------------------------------- 207 (390)
T ss_dssp EEEEEE--ECGG-GSSCCSCCHHHHHHHHHHHHHHSTTCEEEEEETTT--------------------------------
T ss_pred eEEEEE--ECcc-ccCcccccHHHHHHHHHHHHhcCCCcEEEEEeCCC--------------------------------
Confidence 999987 2221 22 3456888888888742 124445433210
Q ss_pred ccceeeecCCCcccccCCCCCCHHHHHHHHHHHhcccCCCcc--eeeeccc-ceeEEEEEEEeeCCCCCCcccccccccc
Q 003827 330 YWDWELANETKPIWMRNPKEIEKDEYHEFYKKTFNEFLDPLA--YTHFTTE-GEVEFRSVLYIPGMGPLNNEEIMNPKTK 406 (793)
Q Consensus 330 ~~~~~~~N~~~~iW~r~~~~v~~eey~~fyk~~~~~~~~pl~--~~h~~~e-g~~~~~~ll~iP~~~p~~~~~~~~~~~~ 406 (793)
..+-.|..+.. ..+|.+.+.+. .+|+. .++|..+ ..+.+.+.+-.|.. ....
T Consensus 208 --------~~~~~f~~~gG------l~~~v~~l~~~-~~~~~~~~i~~~~~~~~~~ve~a~~~~~~----------~~~~ 262 (390)
T 1s16_A 208 --------NTEQRWCYQDG------LNDYLAEAVNG-LPTLPEKPFIGNFAGDTEAVDWALLWLPE----------GGEL 262 (390)
T ss_dssp --------TEEEEECCSSC------HHHHHHHHHTT-SCCEEEEEEEEEEECSSEEEEEEEEECTT----------CCCC
T ss_pred --------ceeEEEEcCCc------HHHHHHHHhCC-CcccCCCcEEEEEeeCCEEEEEEEEeccC----------CCCc
Confidence 00123444331 44566666543 13332 3444333 13666666655522 1236
Q ss_pred ceEEEeeeeeeccCCCCCCCcccccccceeecCCCCCCcccHHhhhccHHHHHHHHHHHHHHHHHHHh
Q 003827 407 NIRLYVKRVFISDDFDGELFPRYLSFVKGVVDSDDLPLNVSREILQESRIVRIMRKRLVRKTFDMIQD 474 (793)
Q Consensus 407 ~i~LYv~rVfI~D~~~~~LlP~wl~FvrGVVDS~DLpLNvSRE~LQ~~~~l~~Irk~l~~k~l~~l~~ 474 (793)
++..|||++++.|-- .-+.-+|..|++.+.+++++
T Consensus 263 ~~~sFvN~i~t~~GG---------------------------------TH~~gfr~alt~~i~~~~~~ 297 (390)
T 1s16_A 263 LTESYVNLIPTMQGG---------------------------------THVNGLRQGLLDAMREFCEY 297 (390)
T ss_dssp CEEEEETTEECTTCB---------------------------------HHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCEecCCCC---------------------------------CHHHHHHHHHHHHHHHHHHH
Confidence 789999999987654 35667788888887666653
No 29
>3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A*
Probab=99.18 E-value=4.7e-11 Score=121.24 Aligned_cols=158 Identities=16% Similarity=0.138 Sum_probs=88.9
Q ss_pred chHHHHHhHhhHhhHHHhhhhhhccCCCCCCCCCCceEEEEECCCCcEEEEEeCCCCCCHHHH--------HHHHh-hhc
Q 003827 104 KEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEEL--------VDCLG-TIA 174 (793)
Q Consensus 104 ~~vflRELIsNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~eeL--------~~~L~-tIa 174 (793)
+...|+|||.||+||... .....|+|.++.+ +.|+|.|||.||+.+++ ...++ .+|
T Consensus 18 ~~~~v~Elv~NsiDa~~~--------------g~a~~I~V~i~~~-g~i~V~DnG~GIp~~~~~~~~~~~~e~i~~~~ha 82 (201)
T 3fv5_A 18 PNHLGQEVIDNSVDEALA--------------GHAKRVDVILHAD-QSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHA 82 (201)
T ss_dssp THHHHHHHHHHHHHHHHT--------------TCCSEEEEEECTT-SCEEEEECSSCCCCSBCTTCSSBHHHHHHHCC--
T ss_pred hhhhhHHHHHHHHHHHhc--------------CCCcEEEEEEeCC-CEEEEEECCCCcCcccccccCcchhheeeeeecc
Confidence 478999999999999632 1245778877654 59999999999999883 22232 333
Q ss_pred ccCchhHHHHhhhcccCCCCCccccccccccceecccccEEEEEEecCCCCCeEEEEEccCCce--EEEEccCCCCCCCC
Q 003827 175 QSGTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADSSS--YVIREETDPEKLLK 252 (793)
Q Consensus 175 ~Sgt~~f~~~l~~~~~~~~d~~~IGqFGIGf~S~F~VadkV~V~Tr~~~~~~~~~w~s~~~~~~--~i~~~~~~~~~~~~ 252 (793)
.| +|-.. ......|..|+|+.|+..||++++|+|+..+ ..|.....+ |.. .+.... +....+
T Consensus 83 ts---K~~~~--------~~~~s~GfrGeglssinalS~~l~v~t~~~g--~~~~~~~~~-G~~~~~~~~~g--~~~~~~ 146 (201)
T 3fv5_A 83 GG---KFSNK--------NYQFSGGLHGVGISVVNALSKRVEVNVRRDG--QVYNIAFEN-GEKVQDLQVVG--TCGKRN 146 (201)
T ss_dssp ------------------------------CHHHHHTEEEEEEEEEETT--EEEEEEEET-TEEEEEEEEEE--ECCTTC
T ss_pred cc---CcCCC--------cccccCcccceecchhhcccceEEEEEEecC--ceEEEEEeC-CEEcccceecc--cCCCCC
Confidence 33 23111 1123579999999999999999999999754 344333333 322 222211 000147
Q ss_pred CCeEEEEEecCCCc---ccCCchhhHHHHHHhhcCCC-ccCeEecc
Q 003827 253 RGTQITLYLKEDDK---YEFSEPTRIQGLVKNYSQFV-SFPIYTWQ 294 (793)
Q Consensus 253 ~GT~I~L~Lk~d~~---~e~~~~~~i~~li~~ys~fi-~~pI~l~~ 294 (793)
.||+|++.- +.. ..-.+..+|.+++++|+-.- ...|.+..
T Consensus 147 ~GT~V~f~P--dr~~F~~~~~e~~~i~~~l~~lA~l~pgv~~~l~~ 190 (201)
T 3fv5_A 147 TGTSVHFWP--DETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKD 190 (201)
T ss_dssp CEEEEEEEE--CGGGSSCCCCCHHHHHHHHHHHHHHSTTCEEEEEE
T ss_pred CCeEEEEEE--CHHHcCCCccCHHHHHHHHHHHHHhCCCCEEEEEe
Confidence 999999962 222 01234578899999988421 24455544
No 30
>1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex, isomerase; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2
Probab=99.17 E-value=1.4e-10 Score=128.82 Aligned_cols=149 Identities=21% Similarity=0.245 Sum_probs=94.3
Q ss_pred hHHHHHhHhhHhhHHHhhhhhhccCCCCCCCCCCceEEEEECCCCcEEEEEeCCCCCCHHHHHH--------HHhhhccc
Q 003827 105 EVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVD--------CLGTIAQS 176 (793)
Q Consensus 105 ~vflRELIsNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~eeL~~--------~L~tIa~S 176 (793)
...|+|||.||+|+.-+ + ....|.|.++.+ +.|+|+|||.||+.+++.. .|.. ...
T Consensus 34 ~~~v~Elv~N~iD~a~~--~------------~~~~I~V~i~~~-~~i~V~DnG~GIp~~~~~~~~~~~~e~if~~-~~~ 97 (390)
T 1kij_A 34 HHLFKEILDNAVDEALA--G------------YATEILVRLNED-GSLTVEDNGRGIPVDLMPEEGKPAVEVIYNT-LHS 97 (390)
T ss_dssp HHHHHHHHHHHHHHHHT--T------------SCCEEEEEECTT-SCEEEEECSSCCCCSEETTTTEEHHHHHHHS-SCE
T ss_pred HHHHHHHHHHHHHHhhh--C------------CCCEEEEEEEcC-CEEEEEEcCCCCCHHHhhhccccchhhheee-eee
Confidence 45899999999999632 1 234677777654 4999999999999998743 3332 233
Q ss_pred CchhHHHHhhhcccCCCCCccccccccccceecccccEEEEEEecCCCCCeEEEEEccCCc-eEEEEccCCCCCCCCCCe
Q 003827 177 GTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADSS-SYVIREETDPEKLLKRGT 255 (793)
Q Consensus 177 gt~~f~~~l~~~~~~~~d~~~IGqFGIGf~S~F~VadkV~V~Tr~~~~~~~~~w~s~~~~~-~~i~~~~~~~~~~~~~GT 255 (793)
|.+ | .. .......|..|+|+.++..++++++|+|++.+ ..|...-..+.. ..+.+.. +.....+||
T Consensus 98 ~~k-f----~~----~~~~~s~G~~G~Gls~v~als~~~~v~t~~~g--~~~~~~~~~G~~~~~~~~~~--~~~~~~~GT 164 (390)
T 1kij_A 98 GGK-F----EQ----GAYKVSGGLHGVGASVVNALSEWTVVEVFREG--KHHRIAFSRGEVTEPLRVVG--EAPRGKTGT 164 (390)
T ss_dssp ESG-G----GG----SSCCCCSCSSTTSHHHHHHTEEEEEEEEEETT--EEEEEEEETTEEEEEEEEEE--ECGGGCCEE
T ss_pred ccc-c----cC----ccccccCCCCCcceeeecccccceEEEEecCC--cEEEEEEcCCcccccceeec--cccCCCCCc
Confidence 322 2 11 11123568999999999999999999999754 445444333321 2233221 000146999
Q ss_pred EEEEEecCCCc-c--cCCchhhHHHHHHhhcC
Q 003827 256 QITLYLKEDDK-Y--EFSEPTRIQGLVKNYSQ 284 (793)
Q Consensus 256 ~I~L~Lk~d~~-~--e~~~~~~i~~li~~ys~ 284 (793)
+|++.- +.. + .-.+...|.+.++.++-
T Consensus 165 ~V~f~P--d~~~F~~~~~~~~~l~~rl~~~A~ 194 (390)
T 1kij_A 165 RVTFKP--DPEIFGNLRFDPSKIRARLREVAY 194 (390)
T ss_dssp EEEEEE--CHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred EEEEEE--ChHHhCCccccHHHHHHHHHHhcC
Confidence 999972 211 0 11345678888888873
No 31
>3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown function, B-subunit binding, isomerase, nucleotide-binding, topoisomerase; HET: DNA; 1.95A {Myxococcus xanthus}
Probab=99.16 E-value=6.3e-10 Score=122.73 Aligned_cols=144 Identities=13% Similarity=0.099 Sum_probs=89.6
Q ss_pred chHHHHHhHhhHhhHHHhhhhhhccCCCCCCCCCCceEEEEECCCCcEEEEEeCCCCCCHHHHHHHHhhhcccCchhHHH
Q 003827 104 KEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLK 183 (793)
Q Consensus 104 ~~vflRELIsNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~eeL~~~L~tIa~Sgt~~f~~ 183 (793)
+...++|||.||+||... +...+|.|.++.++ .|+|+|||.||+. |+.- ..+|.|
T Consensus 31 l~~~v~ElvdNsiDe~~~--------------g~a~~I~V~i~~~g-~I~V~DnGrGIp~-e~v~--~lhags------- 85 (369)
T 3cwv_A 31 LHHLVYFLLDVAYEEARR--------------GECRDVVLEVGGDG-SIALFCTSRTVTA-ENLV--RVATGA------- 85 (369)
T ss_dssp HHHHHHHHHHHHHHHHHT--------------TCCSEEEEEECTTS-CEEEEEEESSCCH-HHHH--HHHTTT-------
T ss_pred HHHHHHHHHhhhHhHHhh--------------CCCCEEEEEEeCCC-EEEEEECCCCcCH-hHee--eeecCC-------
Confidence 467899999999999521 23457888887654 8999999999999 5553 445544
Q ss_pred HhhhcccCCCCCccccccccccceecccccEEEEEEecCCCCCeEEEEEccCCce-----EEEEccCCCCCCCCCCeEEE
Q 003827 184 ALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADSSS-----YVIREETDPEKLLKRGTQIT 258 (793)
Q Consensus 184 ~l~~~~~~~~d~~~IGqFGIGf~S~F~VadkV~V~Tr~~~~~~~~~w~s~~~~~~-----~i~~~~~~~~~~~~~GT~I~ 258 (793)
++... ...+. .+.-| |..++-+++.+++|+|++.+ ..|...-.++ .- ...+.. ..+...++||+|+
T Consensus 86 Kf~~~--~~~~~--y~vsG-Gls~vnalSs~l~v~t~r~g--~~~~~~~~~G-~~~~~~~~~~~l~-~~g~~~~~GT~V~ 156 (369)
T 3cwv_A 86 GFLGR--PPGDG--WGWDS-MLVVSLALSSRYQVDIWADG--RQWRVMGEHG-HPQGEGAAVTPME-PMPVSAERGVRVH 156 (369)
T ss_dssp TGGGS--SCCCS--TTTTS-SHHHHHHTEEEEEEEEEETT--EEEEEEEETT-EECTTCEEESSCC-CCSSCCSEEEEEE
T ss_pred CcCCC--ccccc--ccccC-HHHHHHHhhceEEEEEEECC--CEEEEEEeCC-cccccccccCCce-EecccCCCCCEEE
Confidence 22210 00011 12225 88888889999999999754 3555444433 21 011111 0112247999999
Q ss_pred EEecCCCcccC----CchhhHHHHHHhhcC
Q 003827 259 LYLKEDDKYEF----SEPTRIQGLVKNYSQ 284 (793)
Q Consensus 259 L~Lk~d~~~e~----~~~~~i~~li~~ys~ 284 (793)
+. ++.. .| .+...|.+.+++++-
T Consensus 157 f~--Pd~~-~F~~~~~e~~~l~~rl~~lA~ 183 (369)
T 3cwv_A 157 FV--PDAT-IFEVLAFDRARLSRRCNELAA 183 (369)
T ss_dssp EE--ECTT-TCSCCCCCHHHHHHHHHHHHH
T ss_pred EE--ECHH-HhCCccccHHHHHHHHHHHcC
Confidence 87 2222 22 345688999998884
No 32
>1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP; 2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=99.09 E-value=1.6e-09 Score=120.36 Aligned_cols=247 Identities=15% Similarity=0.132 Sum_probs=147.6
Q ss_pred CchHHHHHhHhhHhhHHHhhhhhhccCCCCCCCCCCceEEEEECCCCcEEEEEeCCCCCCHHH--------HHHHHhhhc
Q 003827 103 HKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEE--------LVDCLGTIA 174 (793)
Q Consensus 103 ~~~vflRELIsNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~ee--------L~~~L~tIa 174 (793)
++...|.|||.||+||..+ .....|.|.++.+ +.|+|+|||.||+.++ +.-.|+..-
T Consensus 34 gl~~lv~ElvdNsiDea~~--------------g~a~~I~V~i~~~-g~I~V~DnG~GIp~~~~~~~~~~~~elv~~~lh 98 (391)
T 1ei1_A 34 GLHHMVFEVVDNAIDEALA--------------GHCKEIIVTIHAD-NSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLH 98 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHT--------------TCCCEEEEEECTT-SCEEEEECSSCCCCSBCTTTSSBHHHHHHHSTT
T ss_pred CHHHHHHHHHHhHHHHHhc--------------CCCCEEEEEEeCC-CEEEEEECCCCcccCcccccCcchHHHhheecc
Confidence 4577899999999999631 1245788888765 4999999999999988 444565332
Q ss_pred ccCchhHHHHhhhcccCCCCCccccccccccceecccccEEEEEEecCCCCCeEEEEEccCC-ceEEEEccCCCCCCCCC
Q 003827 175 QSGTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADS-SSYVIREETDPEKLLKR 253 (793)
Q Consensus 175 ~Sgt~~f~~~l~~~~~~~~d~~~IGqFGIGf~S~F~VadkV~V~Tr~~~~~~~~~w~s~~~~-~~~i~~~~~~~~~~~~~ 253 (793)
.+|+ +.. ......-|..|+|..++-.++.+++|+|+..+ ..|...-..+. ...+... +....+
T Consensus 99 agsK------f~~----~~~~vSgGl~GvGls~vnalS~~l~v~~~r~g--~~~~~~~~~G~~~~~l~~~----~~~~~~ 162 (391)
T 1ei1_A 99 AGGK------FDD----NSYKVSGGLHGVGVSVVNALSQKLELVIQREG--KIHRQIYEHGVPQAPLAVT----GETEKT 162 (391)
T ss_dssp EESC------SSS----SSCSSCSCCSSCHHHHHHHTEEEEEEEEEETT--EEEEEEEETTEESSCCEEE----EECSCC
T ss_pred ccCC------cCC----CcccccCCccccchHHHHHhcCeEEEEEEeCC--cEEEEEEcCCcccccceec----cCcCCC
Confidence 2322 211 11223568899999999999999999998754 44544433321 1111111 012479
Q ss_pred CeEEEEEecCCCcccC-----CchhhHHHHHHhhcCC-CccCeEecccccccccccccCCCCCCCCCccccccccccccc
Q 003827 254 GTQITLYLKEDDKYEF-----SEPTRIQGLVKNYSQF-VSFPIYTWQEKSRTIEVEEEEKPEEGEEQPEGEKKTKKTTKT 327 (793)
Q Consensus 254 GT~I~L~Lk~d~~~e~-----~~~~~i~~li~~ys~f-i~~pI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (793)
||+|++. ++.. -| .+...|.+.++.++-. -..-|.+..+..
T Consensus 163 GT~V~f~--Pd~~-~F~~~~~~e~~~l~~rlr~lA~lnpgv~i~l~d~~~------------------------------ 209 (391)
T 1ei1_A 163 GTMVRFW--PSLE-TFTNVTEFEYEILAKRLRELSFLDSGVSIRLRDKRD------------------------------ 209 (391)
T ss_dssp EEEEEEE--ECTT-TCCSCCSCCHHHHHHHHHHHHHHSTTCEEEEEETTT------------------------------
T ss_pred ccEEEEE--EChh-hhCCccccCHHHHHHHHHHhcccCCCcEEEEEcCCC------------------------------
Confidence 9999987 2222 22 2346788888887742 124455533210
Q ss_pred ccccceeeecCCCcccccCCCCCCHHHHHHHHHHHhcccCCCcc--eeeeccc-ceeEEEEEEEeeCCCCCCcccccccc
Q 003827 328 EKYWDWELANETKPIWMRNPKEIEKDEYHEFYKKTFNEFLDPLA--YTHFTTE-GEVEFRSVLYIPGMGPLNNEEIMNPK 404 (793)
Q Consensus 328 ~~~~~~~~~N~~~~iW~r~~~~v~~eey~~fyk~~~~~~~~pl~--~~h~~~e-g~~~~~~ll~iP~~~p~~~~~~~~~~ 404 (793)
..+..|..+. -..+|.+.+.+. .+|+. .++|..+ ..+.+.+.+-.|.. .
T Consensus 210 ----------~~~~~f~~~g------Gl~~~v~~l~~~-~~~~~~~~i~~~~~~~~i~veva~~~~~~-----------~ 261 (391)
T 1ei1_A 210 ----------GKEDHFHYEG------GIKAFVEYLNKN-KTPIHPNIFYFSTEKDGIGVEVALQWNDG-----------F 261 (391)
T ss_dssp ----------CCEEEECCCS------HHHHHHHHHHHT-SCBSSSCCEEEEEEETTEEEEEEEEEBSS-----------C
T ss_pred ----------cceEEEEcCc------hHHHHHHHHcCC-CcccccccEEEEEecCCEEEEEEEEccCC-----------C
Confidence 0112344432 255566666532 23332 3444333 12566655554521 1
Q ss_pred ccceEEEeeeeeeccCCCCCCCcccccccceeecCCCCCCcccHHhhhccHHHHHHHHHHHHHHHHHHHh
Q 003827 405 TKNIRLYVKRVFISDDFDGELFPRYLSFVKGVVDSDDLPLNVSREILQESRIVRIMRKRLVRKTFDMIQD 474 (793)
Q Consensus 405 ~~~i~LYv~rVfI~D~~~~~LlP~wl~FvrGVVDS~DLpLNvSRE~LQ~~~~l~~Irk~l~~k~l~~l~~ 474 (793)
..++..|||++++.|-- .-+.-+|..|++.+.+++++
T Consensus 262 ~e~~~sFvN~i~t~~GG---------------------------------TH~~gfr~alt~~i~~~~~~ 298 (391)
T 1ei1_A 262 QENIYCFTNNIPQRDGG---------------------------------THLAGFRAAMTRTLNAYMDK 298 (391)
T ss_dssp CEEEEEEETTEECTTCB---------------------------------HHHHHHHHHHHHHHHHHHHH
T ss_pred CeeEEEEEcceecCCCC---------------------------------cHHHHHHHHHHHHHHHHHHH
Confidence 35789999999987654 35677788888887776653
No 33
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Probab=98.92 E-value=1.2e-09 Score=124.30 Aligned_cols=149 Identities=21% Similarity=0.267 Sum_probs=96.4
Q ss_pred hHHHHHhHhhHhhHHHhhhhhhccCCCCCCCCCCceEEEEECC---CCcEEEEEeCCCCCCHHHHHHHHhhhcccCchhH
Q 003827 105 EVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDP---ENGTITITDTGIGMTKEELVDCLGTIAQSGTSKF 181 (793)
Q Consensus 105 ~vflRELIsNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~---~~~~l~I~DnGiGMt~eeL~~~L~tIa~Sgt~~f 181 (793)
..+|+|||+||+||...-. ..+.+.|.+..+. +...|+|+|||+||+.+++...|....++++.
T Consensus 34 ~qvl~nLv~NAida~~~gg-----------~~p~I~I~i~~~~~~~~~~~I~V~DnG~GI~~e~l~~iF~~f~~tsk~-- 100 (471)
T 1mu5_A 34 YQTVRELIENSLDATDVHG-----------ILPNIKITIDLIDDARQIYKVNVVDNGIGIPPQEVPNAFGRVLYSSKY-- 100 (471)
T ss_dssp HHHHHHHHHHHHHTTGGGT-----------CCCEEEEEEEEEETTTTEEEEEEECCSCCCCGGGHHHHHHCCCCC-CC--
T ss_pred HHHHHHHHHHHHHHhhcCC-----------CceEEEEEEEECCCcCcEEEEEEEECCCCCCHHHHHHHhccccccccc--
Confidence 3478999999999964200 0013444443322 33579999999999999999877665333210
Q ss_pred HHHhhhcccCCCCCccccccccccceecccccE-----EEEEEecCCCCCeEEEEEc------cCCceEEEEccCCCCCC
Q 003827 182 LKALKENNDLGADNGLIGQFGVGFYSAFLVAQK-----VVVSTKSPRSDKQYVWEAE------ADSSSYVIREETDPEKL 250 (793)
Q Consensus 182 ~~~l~~~~~~~~d~~~IGqFGIGf~S~F~Vadk-----V~V~Tr~~~~~~~~~w~s~------~~~~~~i~~~~~~~~~~ 250 (793)
......|.+|+|++++..+++. +.|.|+..++..++.|... ++..+...+.. ...
T Consensus 101 -----------~~~~~~gg~GLGL~iv~~l~~~~gG~~i~v~S~~~~g~~~~~~~Lpl~~~~~~g~~~~~~~~~---~~~ 166 (471)
T 1mu5_A 101 -----------VNRQTRGMYGLGVKAAVLYSQMHQDKPIEIETSPVNSKRIYTFKLKIDINKNEPIIVERGSVE---NTR 166 (471)
T ss_dssp -----------CCSCCSCSCTTTHHHHHHHHHHHCCCCEEEEEECTTCSEEEEEEEEECTTTCCEEEEEEEEEE---CCT
T ss_pred -----------ccccCCCCceeeHHHHHHHHHHhCCCceeEEEecCCCceEEEEEEeccccccCCccccccccc---CCC
Confidence 1224568899999999999886 9999987653335655422 11123333221 113
Q ss_pred CCCCeEEEEEecCCCcccCCchhhHHHHHHhhc
Q 003827 251 LKRGTQITLYLKEDDKYEFSEPTRIQGLVKNYS 283 (793)
Q Consensus 251 ~~~GT~I~L~Lk~d~~~e~~~~~~i~~li~~ys 283 (793)
..+||+|++.++.++. ++ ..+|.+++++++
T Consensus 167 ~~~GT~V~v~l~~~~~-e~--~~~I~~~l~~~a 196 (471)
T 1mu5_A 167 GFHGTSVAISIPGDWP-KA--KSRIYEYIKRTY 196 (471)
T ss_dssp TCCEEEEEEEEECCHH-HH--HHHHHHHHHHHH
T ss_pred CCCCEEEEEEEcCCcc-hH--HHHHHHHHHHHH
Confidence 5799999999987544 32 257888998887
No 34
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}
Probab=98.87 E-value=2.5e-09 Score=123.04 Aligned_cols=150 Identities=22% Similarity=0.280 Sum_probs=97.6
Q ss_pred hHHHHHhHhhHhhHHHhhhhhhccCCCCCCCCCCceEEEEECC---CCcEEEEEeCCCCCCHHHHHHHHhhhcccCchhH
Q 003827 105 EVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDP---ENGTITITDTGIGMTKEELVDCLGTIAQSGTSKF 181 (793)
Q Consensus 105 ~vflRELIsNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~---~~~~l~I~DnGiGMt~eeL~~~L~tIa~Sgt~~f 181 (793)
..+|+|||+||+||...- ...+.+.|.+..+. +...|+|.|||+||+.+++...|....++++.
T Consensus 33 ~qvl~NLV~NAida~~~g-----------g~~p~I~I~i~~~~~~~~~~~I~V~DnG~GI~~e~l~~iF~~f~~tsk~-- 99 (530)
T 2zbk_B 33 YQTVRELIENSLDATDVH-----------GILPNIKITIDLIDDARQIYKVNVVDNGIGIPPQEVPNAFGRVLYSSKY-- 99 (530)
T ss_dssp HHHHHHHHHHHHTTTTTT-----------TCCCCCEEEEEEEETTTTEEEEEEECCSCCCCGGGSHHHHTSCCCSCCC--
T ss_pred HHHHHHHHHHHHHHHhcc-----------CCCeEEEEEEEECCCcCceEEEEEEECCCCCCHHHHHHHhccccccCCc--
Confidence 347899999999996320 00014566655433 34579999999999999998877665333210
Q ss_pred HHHhhhcccCCCCCccccccccccceeccccc-----EEEEEEecCCCCCeEEEEEc------cCCceEEEEccCCCCCC
Q 003827 182 LKALKENNDLGADNGLIGQFGVGFYSAFLVAQ-----KVVVSTKSPRSDKQYVWEAE------ADSSSYVIREETDPEKL 250 (793)
Q Consensus 182 ~~~l~~~~~~~~d~~~IGqFGIGf~S~F~Vad-----kV~V~Tr~~~~~~~~~w~s~------~~~~~~i~~~~~~~~~~ 250 (793)
......|.+|+|++++..+++ ++.|.|+..++..++.|... ++......+.. ...
T Consensus 100 -----------~~~~~~gg~GLGLsiv~~l~~~~gG~~I~V~S~~~~g~~~~~~~Lpl~~~~~~g~~~~~~~~~---~~~ 165 (530)
T 2zbk_B 100 -----------VNRQTRGMYGLGVKAAVLYSQMHQDKPIEIETSPVNSKRIYTFKLKIDINKNEPIIVERGSVE---NTR 165 (530)
T ss_dssp -----------CCSCCSCSSSSHHHHHHHHHHHHCCCCEEEEEECTTCSEEEEEEEEEETTTTEEEEEEEEEEE---CCS
T ss_pred -----------ccccCCCCccchHHHHHHHHHHhCCCceEEEEecCCCeEEEEEEEEecccccCCccccccccC---CCC
Confidence 122456899999999999987 69999987653335555421 11122222221 112
Q ss_pred CCCCeEEEEEecCCCcccCCchhhHHHHHHhhcC
Q 003827 251 LKRGTQITLYLKEDDKYEFSEPTRIQGLVKNYSQ 284 (793)
Q Consensus 251 ~~~GT~I~L~Lk~d~~~e~~~~~~i~~li~~ys~ 284 (793)
..+||+|++.++.++. ++ ..++.+++++|+-
T Consensus 166 ~~~GT~V~v~l~~~~~-e~--~~~i~~~l~~~Al 196 (530)
T 2zbk_B 166 GFHGTSVAISIPGDWP-KA--KSRIYEYIKRTYI 196 (530)
T ss_dssp SCCEEEEEEEEECCHH-HH--HHHHHHHHHHHHH
T ss_pred CCCCcEEEEEeccchh-hH--HHHHHHHHHHHHH
Confidence 5799999999987644 33 2578888988874
No 35
>4duh_A DNA gyrase subunit B; structure-based drug design, antibacterial, DNA gyrase B, GY isomerase-isomerase inhibitor complex; HET: DNA RLI; 1.50A {Escherichia coli} PDB: 1aj6_A* 1kzn_A* 3g7e_A*
Probab=98.71 E-value=2.8e-08 Score=102.15 Aligned_cols=157 Identities=18% Similarity=0.179 Sum_probs=92.9
Q ss_pred chHHHHHhHhhHhhHHHhhhhhhccCCCCCCCCCCceEEEEECCCCcEEEEEeCCCCCCHHHH--------HHHHhhhcc
Q 003827 104 KEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEEL--------VDCLGTIAQ 175 (793)
Q Consensus 104 ~~vflRELIsNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~eeL--------~~~L~tIa~ 175 (793)
+...++|||.||+|+... .....|.|.++.+ +.|+|+|||.||+.+.. .-.|+.+-.
T Consensus 36 l~~lv~ElvdNsiDea~~--------------g~~~~I~V~i~~~-g~i~V~DnGrGIp~~~~~~~~~~~~e~i~t~lha 100 (220)
T 4duh_A 36 LHHMVFEVVDNAIDEALA--------------GHCKEIIVTIHAD-NSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHA 100 (220)
T ss_dssp HHHHHHHHHHHHHHHHHH--------------SCCCEEEEEECTT-SCEEEEECSSCCCCSEETTTTEEHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHHHHHhc--------------CCCCEEEEEEeCC-CcEEEEECCcCcccccccccCcchhhheeeeccc
Confidence 467899999999999532 1344778877764 58999999999999863 223433322
Q ss_pred cCchhHHHHhhhcccCCCCCccccccccccceecccccEEEEEEecCCCCCeEEEEEccCCc-eEEEEccCCCCCCCCCC
Q 003827 176 SGTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADSS-SYVIREETDPEKLLKRG 254 (793)
Q Consensus 176 Sgt~~f~~~l~~~~~~~~d~~~IGqFGIGf~S~F~VadkV~V~Tr~~~~~~~~~w~s~~~~~-~~i~~~~~~~~~~~~~G 254 (793)
+|+ | .. ......-|..|+|..++-.++.+++|++++.+ ..|..+-..+.. ..+.... ....+|
T Consensus 101 g~K--f----d~----~~yk~SgGlhGvG~svvNAlS~~l~v~v~r~g--~~~~~~f~~G~~~~~l~~~g----~~~~~G 164 (220)
T 4duh_A 101 GGK--F----DD----NSYKVSGGLHGVGVSVVNALSQKLELVIQREG--KIHRQIYEHGVPQAPLAVTG----ETEKTG 164 (220)
T ss_dssp SSC--C----CT----TC--------CCCHHHHHHTEEEEEEEEEETT--EEEEEEEETTEESSSCEEEE----ECSCCE
T ss_pred CCC--c----CC----CccccccCccceecchhcccccceEEEEEECC--EEEEEEecCCcCcCCceecc----ccCCCC
Confidence 321 2 11 11224668999999999999999999998755 334332222211 1111111 135799
Q ss_pred eEEEEEecCCCcccC-----CchhhHHHHHHhhcCCCc--cCeEeccc
Q 003827 255 TQITLYLKEDDKYEF-----SEPTRIQGLVKNYSQFVS--FPIYTWQE 295 (793)
Q Consensus 255 T~I~L~Lk~d~~~e~-----~~~~~i~~li~~ys~fi~--~pI~l~~~ 295 (793)
|+|+..- +.. -| .+...|.+.++.++ |+. ..|.+..+
T Consensus 165 T~V~F~P--d~~-~F~~~~~~~~~~l~~rlrelA-~ln~gv~i~l~de 208 (220)
T 4duh_A 165 TMVRFWP--SLE-TFTNVTEFEYEILAKRLRELS-FLNSGVSIRLRDK 208 (220)
T ss_dssp EEEEEEE--CTT-TCCSSCSCCHHHHHHHHHHHH-HHCTTSEEEEEET
T ss_pred cEEEEEE--CHH-HhCCcccCCHHHHHHHHHHHH-hcCCCCEEEEEcc
Confidence 9999863 322 22 23467888888887 343 45565543
No 36
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei}
Probab=98.70 E-value=1.6e-08 Score=118.23 Aligned_cols=160 Identities=21% Similarity=0.223 Sum_probs=99.1
Q ss_pred hHHHHHhHhhHhhHHHhhhhhhccCCCCCCCCCCceEEEEECCC---CcEEEEEeCCCCCCHHHHHHHHhhhcccCchhH
Q 003827 105 EVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPE---NGTITITDTGIGMTKEELVDCLGTIAQSGTSKF 181 (793)
Q Consensus 105 ~vflRELIsNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~---~~~l~I~DnGiGMt~eeL~~~L~tIa~Sgt~~f 181 (793)
...|+|||+||+||... ......|.|.+..+ ...|+|+|||.||+.+++...|..+..++ .|
T Consensus 39 ~~Vl~ELV~NAIDa~~~-------------~g~~~~I~V~i~~~~~~~~~I~V~DnG~GIp~e~l~~iF~~~~ats--kf 103 (621)
T 2q2e_B 39 ITTVKEAVDNALDACEE-------------AGILPDILVQVERTGPDYVTVIIEDNGPGIVREQIPKVFAKLLYGS--RF 103 (621)
T ss_dssp HHHHHHHHHHHHHHHTT-------------TSCSCEEEECCEEETTTEEEEEEECCSCCCCGGGHHHHHSCCCCC----C
T ss_pred HHHHHHHHHHHHHHHhh-------------cCCCcEEEEEEEECCCcEEEEEEEECCCCCCHHHHHHHhhhhccCC--cc
Confidence 45789999999999742 11222555554333 25799999999999999988775543322 11
Q ss_pred HHHhhhcccCCCCCccccccccccceecccccE-----EEEEEecCCCCCeEEEEE-----ccCCceEEEEccCCCCCCC
Q 003827 182 LKALKENNDLGADNGLIGQFGVGFYSAFLVAQK-----VVVSTKSPRSDKQYVWEA-----EADSSSYVIREETDPEKLL 251 (793)
Q Consensus 182 ~~~l~~~~~~~~d~~~IGqFGIGf~S~F~Vadk-----V~V~Tr~~~~~~~~~w~s-----~~~~~~~i~~~~~~~~~~~ 251 (793)
. . .....|..|+|++++..++.. +.|.|+..+...++.+.. .+.+........ ....
T Consensus 104 ----~-----~-~~~s~Gg~GlGLsiv~~ls~~~gG~~I~V~S~~~gg~~g~~~~~~lp~~~g~~~~~~~~~~---~~~~ 170 (621)
T 2q2e_B 104 ----H-----A-LKQSRGQQGIGISAAVLYAQMTAGRHTKILSKTSPTAPAHYYELMINTSTNEPDILVDEVR---DWFR 170 (621)
T ss_dssp ----C-----C-CC-CCSSSSHHHHHHHHHHHHHTCCCCEEEEECSSSSCEEEEECCCCSSSCSCCCCCEEEC---CCSC
T ss_pred ----c-----c-ccccCCCceechhhhhHHHHHhCCCceeEEeeccCCccceEEEEecchhcccccccccccc---cCCC
Confidence 1 0 112348999999999999887 599998765446777664 222222111111 1235
Q ss_pred CCCeEEEEEecCCCcccCCchhhHHHHHHhhcCCC-ccCeEecc
Q 003827 252 KRGTQITLYLKEDDKYEFSEPTRIQGLVKNYSQFV-SFPIYTWQ 294 (793)
Q Consensus 252 ~~GT~I~L~Lk~d~~~e~~~~~~i~~li~~ys~fi-~~pI~l~~ 294 (793)
.+||+|++.++.+.. ++ ....|.+.+++|+-.- ..-|.+..
T Consensus 171 ~~GT~V~~~f~~~~~-~~-~~~~I~~~L~~lAllnpgv~I~L~d 212 (621)
T 2q2e_B 171 PHGTQIELEMRAAYV-KG-RRQSIYEYLKATAIVNPHARITLID 212 (621)
T ss_dssp SSCCCEEEECSCCCC-CC-SSSSSHHHHHHHHHHCCSCEEEECC
T ss_pred CCCCEEEEEecCccc-hH-HHHHHHHHHHHHHhhCCCCEEEEEE
Confidence 699999999874433 21 0257888888877421 23344443
No 37
>1zxm_A TOPO IIA ATPase, DNA topoisomerase II, alpha isozyme; GHKL nucleotide-binding fold; HET: DNA ANP; 1.87A {Homo sapiens} PDB: 1zxn_A*
Probab=98.69 E-value=3.6e-08 Score=109.74 Aligned_cols=160 Identities=18% Similarity=0.163 Sum_probs=97.0
Q ss_pred hHHHHHhHhhHhhHHHhhhhhhccCCCCCCCCCCceEEEEECCCCcEEEEEeCCCCCCHHH--------HHHHHhhhccc
Q 003827 105 EVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEE--------LVDCLGTIAQS 176 (793)
Q Consensus 105 ~vflRELIsNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~ee--------L~~~L~tIa~S 176 (793)
...+.|||.||+||... +.....|.|.++.+++.|+|+|||.||+.++ +.-.|+..-.+
T Consensus 54 ~~lv~EivdNsiDe~~~-------------~g~~~~I~V~i~~~~~~I~V~DnGrGIPv~~h~~~~~~~~e~v~t~lhag 120 (400)
T 1zxm_A 54 YKIFDEILVNAADNKQR-------------DPKMSCIRVTIDPENNLISIWNNGKGIPVVEHKVEKMYVPALIFGQLLTS 120 (400)
T ss_dssp HHHHHHHHHHHHHHHHH-------------CTTCCEEEEEEETTTTEEEEEEESSCCCCSEETTTTEEHHHHHHHSSSEE
T ss_pred HHHHHHHHhhHHhHHhh-------------cCCCceEEEEEECCCCEEEEEECCCcccCccccccCccchhheeeeeccc
Confidence 45789999999999621 1133467887777668999999999999887 44456533223
Q ss_pred CchhHHHHhhhcccCCCCCccccccccccceecccccEEEEEEecCCCCCeEEEEEccCCc-eEEEEccCCCCCCCCCCe
Q 003827 177 GTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADSS-SYVIREETDPEKLLKRGT 255 (793)
Q Consensus 177 gt~~f~~~l~~~~~~~~d~~~IGqFGIGf~S~F~VadkV~V~Tr~~~~~~~~~w~s~~~~~-~~i~~~~~~~~~~~~~GT 255 (793)
|+ | .. ..-...-|..|+|.-++-+++.+++|+|+.......|...-..+.. -...+.. .....+||
T Consensus 121 sK--f----~~----~~ykvSgGlhGvGlsvVnAlS~~l~v~v~~~~~g~~~~~~~~~G~~~~~~~~ig---~~~~~~GT 187 (400)
T 1zxm_A 121 SN--Y----DD----DEKKVTGGRNGYGAKLCNIFSTKFTVETASREYKKMFKQTWMDNMGRAGEMELK---PFNGEDYT 187 (400)
T ss_dssp SC--C----CG----GGCCCCSCCSSCHHHHHHHTEEEEEEEEEETTTTEEEEEEEETTTTEECCCEEE---ECCSCCEE
T ss_pred CC--C----CC----CcccccCCccccceeeeEEeccceEEEEecCCCCcEEEEEEccCccccCcceec---cCCCCCcc
Confidence 22 2 11 0112366999999999999999999999875444555444333312 1111110 01135899
Q ss_pred EEEEEecCC---CcccCCchhh---HHHHHHhhcCCCc--cCeEec
Q 003827 256 QITLYLKED---DKYEFSEPTR---IQGLVKNYSQFVS--FPIYTW 293 (793)
Q Consensus 256 ~I~L~Lk~d---~~~e~~~~~~---i~~li~~ys~fi~--~pI~l~ 293 (793)
+|+..-... .. +| +.+. |.+.++.++- +. ..|.+.
T Consensus 188 ~V~F~Pd~~iF~~~-ef-~~~~~~~l~~rlrelA~-lnpgv~i~l~ 230 (400)
T 1zxm_A 188 CITFQPDLSKFKMQ-SL-DKDIVALMVRRAYDIAG-STKDVKVFLN 230 (400)
T ss_dssp EEEEEECGGGGTCS-SC-CHHHHHHHHHHHHHHHH-HSSSCEEEET
T ss_pred EEEEEEChHHhCce-ee-cHHHHHHHHHHHHHHHh-hCCCcEEEEe
Confidence 999873221 11 22 2334 5677777663 33 445543
No 38
>4emv_A DNA topoisomerase IV, B subunit; protein-inhibitor complex, ATP binding, structure-based drug antimicrobial, virtual screen; HET: DNA 0R9; 1.70A {Streptococcus pneumoniae GA47373} PDB: 4em7_A*
Probab=98.56 E-value=4.1e-07 Score=93.79 Aligned_cols=161 Identities=17% Similarity=0.157 Sum_probs=94.0
Q ss_pred hHHHHHhHhhHhhHHHhhhhhhccCCCCCCCCCCceEEEEECCCCcEEEEEeCCCCCCHHH-------HHHHHhhhcccC
Q 003827 105 EVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEE-------LVDCLGTIAQSG 177 (793)
Q Consensus 105 ~vflRELIsNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~ee-------L~~~L~tIa~Sg 177 (793)
...++|+|.||+|+... .....|.|.++.+ +.|+|+|||.||+.++ +.-.|+.+-.+|
T Consensus 42 ~~~v~Eiv~NaiD~~~~--------------g~~~~I~V~i~~~-g~i~V~DnG~GIp~~~h~~~~~~~e~v~t~lhag~ 106 (226)
T 4emv_A 42 HHLVWEIVDNAVDEALS--------------GFGDRIDVTINKD-GSLTVQDHGRGMPTGMHAMGIPTVEVIFTILHAGG 106 (226)
T ss_dssp HHHHHHHHHHHHHHHHT--------------TCCSEEEEEECTT-SCEEEEECSSCCCCSBCGGGCBHHHHHHHCBC---
T ss_pred HHHHHHHHHHHHHHHhc--------------CCCcEEEEEEeCC-CeEEEEEcCCCccccccccCceehheeEEeecccC
Confidence 45789999999999631 1334788888764 5899999999999988 444454333332
Q ss_pred chhHHHHhhhcccCCCCCccccccccccceecccccEEEEEEecCCCCCeEEEEEccCCc--eEEEEccCCCCCCCCCCe
Q 003827 178 TSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADSS--SYVIREETDPEKLLKRGT 255 (793)
Q Consensus 178 t~~f~~~l~~~~~~~~d~~~IGqFGIGf~S~F~VadkV~V~Tr~~~~~~~~~w~s~~~~~--~~i~~~~~~~~~~~~~GT 255 (793)
+ |-.. .-...-|..|+|..++-.++.+++|++++.+ ..|..+-..++. ..+.... +......||
T Consensus 107 K--fd~~--------~yk~SgGlhGvG~svvNALS~~l~v~v~r~g--~~~~q~f~~Gg~~~~~l~~ig--~~~~~~~GT 172 (226)
T 4emv_A 107 K--FGQG--------GYKTSGGLHGVGSSVVNALSSWLEVEITRDG--AVYKQRFENGGKPVTTLKKIG--TALKSKTGT 172 (226)
T ss_dssp ---------------------CGGGCCHHHHHHTEEEEEEEEEETT--EEEEEEEETTTEESSCSEEEE--ECCTTCCEE
T ss_pred c--cCcc--------ceEeccccccccchhhhhcccceEEEEEeCC--cEEEEEECCCCEEcCCceEec--ccCCCCCCe
Confidence 2 3211 1234569999999999999999999999754 334333332211 1111110 001147999
Q ss_pred EEEEEecCCC-cccCCchhhHHHHHHhhcCCC--ccCeEeccc
Q 003827 256 QITLYLKEDD-KYEFSEPTRIQGLVKNYSQFV--SFPIYTWQE 295 (793)
Q Consensus 256 ~I~L~Lk~d~-~~e~~~~~~i~~li~~ys~fi--~~pI~l~~~ 295 (793)
+|+..-.... ...-++...|.+.++.++ |+ ...|.+.++
T Consensus 173 ~V~F~PD~~iF~~~~~~~~~l~~rlrelA-~ln~gv~i~l~de 214 (226)
T 4emv_A 173 KVTFMPDATIFSTTDFKYNTISERLNESA-FLLKNVTLSLTDK 214 (226)
T ss_dssp EEEEEECTTTCSCCCCCHHHHHHHHHHHH-HHHCSCEEEEEET
T ss_pred EEEEEECHHHcCCCCcCHHHHHHHHHHHh-hcCCCCEEEEEec
Confidence 9998632211 001134567888888877 34 345666553
No 39
>3lnu_A Topoisomerase IV subunit B; PARE, ATP-binding, nucleotide-BI topoisomerase; 2.20A {Xanthomonas oryzae PV} PDB: 3lps_A*
Probab=98.31 E-value=9.5e-07 Score=98.27 Aligned_cols=160 Identities=18% Similarity=0.188 Sum_probs=87.0
Q ss_pred chHHHHHhHhhHhhHHHhhhhhhccCCCCCCCCCCceEEEEECCCCcEEEEEeCCCCCCHHHH-------HHHHhhhccc
Q 003827 104 KEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEEL-------VDCLGTIAQS 176 (793)
Q Consensus 104 ~~vflRELIsNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~eeL-------~~~L~tIa~S 176 (793)
+...+.|+|.||+|+.-. .....|.|.++.+ +.|+|+|||.||+.+.. ...+.+.-..
T Consensus 51 ~~hlv~EivdNsiDea~a--------------g~~~~I~V~i~~d-gsI~V~DnGrGIPv~~h~~~~~~~~e~i~t~lha 115 (408)
T 3lnu_A 51 PNHLAQEVIDNSVDEALA--------------GHAKQIEVTLYKD-GSCEVSDDGRGMPVDIHPEEKIPGVELILTRLHA 115 (408)
T ss_dssp THHHHHHHHHHHHHHHHT--------------TSCCEEEEEECTT-SCEEEEECSSCCCCSBCTTTCSBHHHHHHHCC--
T ss_pred cchhhHHHHHHHHHHhhc--------------CCCceEEEEEeCC-CeEEEEEcCCCCCcccccccCCcchheEEEeccc
Confidence 467899999999999521 1344788877654 58999999999998762 2232233333
Q ss_pred CchhHHHHhhhcccCCCCCccccccccccceecccccEEEEEEecCCCCCeEEEEEccCCc-eEEEEccCCCCCCCCCCe
Q 003827 177 GTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADSS-SYVIREETDPEKLLKRGT 255 (793)
Q Consensus 177 gt~~f~~~l~~~~~~~~d~~~IGqFGIGf~S~F~VadkV~V~Tr~~~~~~~~~w~s~~~~~-~~i~~~~~~~~~~~~~GT 255 (793)
|.+ |-.. .-...-|..|+|..++-.++.+++|++++.+ ..|..+-..+.. ..+.... +......||
T Consensus 116 ggK-fd~~--------~ykvSgGlhGvG~svVNALS~~l~v~v~rdG--k~~~q~f~~G~~~~~l~~ig--~~~~~~~GT 182 (408)
T 3lnu_A 116 GGK-FNNR--------NYTFSGGLHGVGVSVVNALSTKVELFIKREG--SEHRMEFRDGNAASKLEVVG--TVGKKNTGT 182 (408)
T ss_dssp ---------------------------CHHHHHHTEEEEEEEEEETT--EEEEEEEETTEECSCCEEEE--ECCTTCCEE
T ss_pred CCC-cCCC--------ceeecCCccccccceehhccCeEEEEEEECC--EEEEEEECCCEECCCceEec--cCcCCCCCc
Confidence 322 3111 1123568899999999999999999999755 334322222210 1111110 001146999
Q ss_pred EEEEEecCCCcccC----CchhhHHHHHHhhcCC-CccCeEecc
Q 003827 256 QITLYLKEDDKYEF----SEPTRIQGLVKNYSQF-VSFPIYTWQ 294 (793)
Q Consensus 256 ~I~L~Lk~d~~~e~----~~~~~i~~li~~ys~f-i~~pI~l~~ 294 (793)
+|+..- |.. -| ++...|.+.++.++-. -...|.+.+
T Consensus 183 ~V~F~P--D~~-iF~~~~f~~~~l~~rlrelA~Ln~Gv~I~l~d 223 (408)
T 3lnu_A 183 RLRFWA--DPK-YFDTPKFNVRALRHLLRAKAVLCPGLTVKLHD 223 (408)
T ss_dssp EEEEEE--CGG-GSSCSCCCHHHHHHHHHHHHHHSTTCEEEEEE
T ss_pred EEEEEE--CHH-HhCCCCcCHHHHHHHHHHHHhhcCCCEEEEEe
Confidence 999863 322 12 3456778888877631 134566644
No 40
>3ttz_A DNA gyrase subunit B; protein-inhibitor complex, ATP-binding, structure-based drug antimicrobial, isomerase-isomerase inhibitor complex; HET: DNA 07N; 1.63A {Staphylococcus aureus} PDB: 3u2d_A* 3u2k_A* 3g75_A* 3g7b_A*
Probab=98.22 E-value=2.7e-06 Score=86.01 Aligned_cols=142 Identities=18% Similarity=0.190 Sum_probs=85.0
Q ss_pred chHHHHHhHhhHhhHHHhhhhhhccCCCCCCCCCCceEEEEECCCCcEEEEEeCCCCCCHHHHHHHHhhhcccCchhHHH
Q 003827 104 KEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLK 183 (793)
Q Consensus 104 ~~vflRELIsNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~eeL~~~L~tIa~Sgt~~f~~ 183 (793)
+...++|||.||+|+.-. .....|.|.++.+ +.|+|.|||.||+.+ .+++|+.... +
T Consensus 32 l~~~v~Elv~NsiD~~~a--------------g~~~~I~V~i~~~-g~i~V~DnG~Gip~~-------~h~~~~~~~~-e 88 (198)
T 3ttz_A 32 LHHLVWEIVDNSIDEALA--------------GYANQIEVVIEKD-NWIKVTDNGRGIPVD-------IQEKMGRPAV-E 88 (198)
T ss_dssp HHHHHHHHHHHHHHHHHT--------------TSCCEEEEEEEGG-GEEEEEECSSCCCCS-------BCTTTSSBHH-H
T ss_pred hHHHHHHHHHHHHhHHhc--------------CCCcEEEEEEeCC-CeEEEEECCCCcccc-------ccCcCCCccc-c
Confidence 467899999999998421 1234677776654 599999999999986 4555543211 1
Q ss_pred HhhhcccCCCCCccccccccccceecccccEEEEEEecCCCCCeEEEEEccCCc-eEEEEccCCCCCCCCCCeEEEEEec
Q 003827 184 ALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADSS-SYVIREETDPEKLLKRGTQITLYLK 262 (793)
Q Consensus 184 ~l~~~~~~~~d~~~IGqFGIGf~S~F~VadkV~V~Tr~~~~~~~~~w~s~~~~~-~~i~~~~~~~~~~~~~GT~I~L~Lk 262 (793)
.+ |+ .-++-.++.+++|+|++.+ ..|..+...+.. ..+.... ....+||+|+..
T Consensus 89 -------------~i--~t--~SvVNALS~~l~v~v~r~g--~~~~~~f~~G~~~~~l~~i~----~~~~~GT~V~F~-- 143 (198)
T 3ttz_A 89 -------------VI--LT--SSVVNALSQDLEVYVHRNE--TIYHQAYKKGVPQFDLKEVG----TTDKTGTVIRFK-- 143 (198)
T ss_dssp -------------HH--HH--TCHHHHTEEEEEEEEEETT--EEEEEEEETTEESSCCEEEE----ECSCCEEEEEEE--
T ss_pred -------------cc--ce--eEehhhhcCeEEEEEEECC--cEEEEEEeCCEECCCceecc----CCCCCCcEEEEE--
Confidence 11 22 3334456799999998765 344333333211 1111111 124799999987
Q ss_pred CCCcccC-----CchhhHHHHHHhhcCCCc--cCeEeccc
Q 003827 263 EDDKYEF-----SEPTRIQGLVKNYSQFVS--FPIYTWQE 295 (793)
Q Consensus 263 ~d~~~e~-----~~~~~i~~li~~ys~fi~--~pI~l~~~ 295 (793)
++.. -| .+...|.+.++.++ |+. ..|.+..+
T Consensus 144 Pd~~-iF~~~~~~~~~~l~~rlrelA-~ln~gv~i~l~de 181 (198)
T 3ttz_A 144 ADGE-IFTETTVYNYETLQQRIRELA-FLNKGIQITLRDE 181 (198)
T ss_dssp ECTT-TCCSCCCCCHHHHHHHHHHHH-HHSTTCEEEEEEC
T ss_pred ECHH-HhccCCccCHHHHHHHHHHHh-hcCCCCEEEEEee
Confidence 3332 33 34567888888887 343 45555443
No 41
>1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A {Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB: 1qzr_A*
Probab=97.91 E-value=2.2e-05 Score=87.84 Aligned_cols=128 Identities=20% Similarity=0.206 Sum_probs=80.0
Q ss_pred HHHHHhHhhHhhHHHhhhhhhccCCCCCCCCCCceEEEEECCCCcEEEEEeCCCCCCHHHHH--------HHHhhhcccC
Q 003827 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELV--------DCLGTIAQSG 177 (793)
Q Consensus 106 vflRELIsNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~eeL~--------~~L~tIa~Sg 177 (793)
..+.|+|.||+|+... +.....|.|.++.+++.|+|+|||.||+.+... -.|+.+-.+|
T Consensus 67 ~lv~EivdNaiDe~~~-------------~g~~~~I~V~i~~d~~sI~V~DnGrGIPv~~h~~~g~~~~E~v~t~LhaGg 133 (418)
T 1pvg_A 67 KIFDEILVNAADNKVR-------------DPSMKRIDVNIHAEEHTIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTSS 133 (418)
T ss_dssp HHHHHHHHHHHHHHHH-------------CTTCCEEEEEEETTTTEEEEEEESSCCCCSBCTTTCSBHHHHHHHSSSEES
T ss_pred HHHHHHHhCHHHHHHh-------------cCCCCEEEEEEECCCCEEEEEECCCcccCcccccCCcccceEEEEEEeccc
Confidence 4789999999999632 123347888887776899999999999876522 1244443343
Q ss_pred chhHHHHhhhcccCCCCCccccccccccceecccccEEEEEEecCCCCCeEEEEEccCCce----EEEEccCCCCCCCCC
Q 003827 178 TSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADSSS----YVIREETDPEKLLKR 253 (793)
Q Consensus 178 t~~f~~~l~~~~~~~~d~~~IGqFGIGf~S~F~VadkV~V~Tr~~~~~~~~~w~s~~~~~~----~i~~~~~~~~~~~~~ 253 (793)
+ | . .+.-...-|.-|+|.-.+=+++.+++|+++...++..|...-..+..- .+... ....+
T Consensus 134 K--f----d----~~~ykvSGGLhGVG~SvVNALS~~l~V~v~r~rdGk~y~q~f~~G~~~~~~p~i~~~-----~~~~t 198 (418)
T 1pvg_A 134 N--Y----D----DDEKKVTGGRNGYGAKLCNIFSTEFILETADLNVGQKYVQKWENNMSICHPPKITSY-----KKGPS 198 (418)
T ss_dssp C--C----C----TTSCCCCSCCSSCHHHHHHHTEEEEEEEEEETTTTEEEEEEEETTTTEECCCEEEEC-----CSSCC
T ss_pred c--c----C----CCceeccCCccceeeeeeeeccceEEEEEEECCCCcEEEEEEEcCCCccCCCeeccc-----CCCCC
Confidence 2 2 1 111223568899999888899999999998632234443222222111 12221 12368
Q ss_pred CeEEEEEe
Q 003827 254 GTQITLYL 261 (793)
Q Consensus 254 GT~I~L~L 261 (793)
||+|+..-
T Consensus 199 GT~V~F~P 206 (418)
T 1pvg_A 199 YTKVTFKP 206 (418)
T ss_dssp EEEEEEEE
T ss_pred ceEEEEEE
Confidence 99998764
No 42
>1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A
Probab=97.38 E-value=0.00017 Score=67.60 Aligned_cols=74 Identities=18% Similarity=0.166 Sum_probs=44.9
Q ss_pred HHHHhHhhHhhHHHhhhhhhccCCCCCCCCCCceEEEEECCCCcEEEEEeCCCCCCHHHHHHHHhhhcccCchhHHHHhh
Q 003827 107 FLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKALK 186 (793)
Q Consensus 107 flRELIsNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~eeL~~~L~tIa~Sgt~~f~~~l~ 186 (793)
.+.+||.||..+.. .+.+.|.+..+.+.-.|+|.|||.||+.+++...+....++.+
T Consensus 50 il~nLl~NA~~~~~---------------~~~I~i~~~~~~~~~~i~v~D~G~gi~~~~~~~if~~f~~~~~-------- 106 (150)
T 1ysr_A 50 AVDNAIANAVKHGG---------------ATLVQLSAVSSRAGVEIAIDDNGSGVPEGERQVVFERFSRGST-------- 106 (150)
T ss_dssp HHHHHHHHHHHTTC---------------CSEEEEEEEEETTEEEEEEEESSSCCCGGGHHHHHTSCC------------
T ss_pred HHHHHHHHHHhcCC---------------CcEEEEEEEecCCEEEEEEEECCCCCCHHHHHHHhcccccCCC--------
Confidence 56799999998831 1334455544555567999999999999998865543222110
Q ss_pred hcccCCCCCccccccccccceecccc
Q 003827 187 ENNDLGADNGLIGQFGVGFYSAFLVA 212 (793)
Q Consensus 187 ~~~~~~~d~~~IGqFGIGf~S~F~Va 212 (793)
..-+..|+|++.+-.++
T Consensus 107 ---------~~~~g~GlGL~i~~~~~ 123 (150)
T 1ysr_A 107 ---------ASHSGSGLGLALVAQQA 123 (150)
T ss_dssp ----------------CCCHHHHHHH
T ss_pred ---------CCCCCCCcCHHHHHHHH
Confidence 11245799988777664
No 43
>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli}
Probab=97.35 E-value=9e-05 Score=73.45 Aligned_cols=72 Identities=19% Similarity=0.257 Sum_probs=33.1
Q ss_pred HHHHHhHhhHhhHHHhhhhhhccCCCCCCCCCCceEEEEECCCCcEEEEEeCCCCCCHHHHHHHHhhhcccCchhHHHHh
Q 003827 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKAL 185 (793)
Q Consensus 106 vflRELIsNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~eeL~~~L~tIa~Sgt~~f~~~l 185 (793)
.++.+||+||+.+.. ....|.|.+.... |+|.|||.||+.+++...+....++
T Consensus 120 ~il~nLl~NAi~~~~----------------~~~~i~i~~~~~~--i~V~D~G~Gi~~~~~~~if~~f~~~--------- 172 (222)
T 3jz3_A 120 LLVRNLLDNAVRYSP----------------QGSVVDVTLNADN--FIVRDNGPGVTPEALARIGERFYRP--------- 172 (222)
T ss_dssp HHHHHHHHHHHHTCC----------------TTCEEEEEECSSE--EEEECSCC--------------------------
T ss_pred HHHHHHHHHHHHcCC----------------CCCeEEEEEccCe--EEEEECCCCCCHHHHHHHHhhhccC---------
Confidence 467899999998841 2234666665433 9999999999999887654322111
Q ss_pred hhcccCCCCCccccccccccceecccc
Q 003827 186 KENNDLGADNGLIGQFGVGFYSAFLVA 212 (793)
Q Consensus 186 ~~~~~~~~d~~~IGqFGIGf~S~F~Va 212 (793)
.....+..|+|++-|-.++
T Consensus 173 --------~~~~~~g~GlGL~i~~~i~ 191 (222)
T 3jz3_A 173 --------PGQTATGSGLGLSIVQRIA 191 (222)
T ss_dssp -----------------CTHHHHHHHH
T ss_pred --------CCCCCCcccccHHHHHHHH
Confidence 0011246799988776663
No 44
>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A*
Probab=97.32 E-value=0.00039 Score=76.63 Aligned_cols=116 Identities=19% Similarity=0.183 Sum_probs=64.1
Q ss_pred HHHHHhHhhHhhHHHhhhhhhccCCCCCCCCCCceEEEEECCCCcEEEEEeCCCCCCHHHHHHHHhhhcccCchhHHHHh
Q 003827 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKAL 185 (793)
Q Consensus 106 vflRELIsNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~eeL~~~L~tIa~Sgt~~f~~~l 185 (793)
.+|.+||+||+.|...-.-. ....+.+.|.+..+.+.-.|+|.|||.||+.+++..-|...-+..... ..
T Consensus 234 ~il~NLl~NAik~~~~~~~~-------~~~~~~I~I~~~~~~~~v~i~V~D~G~GI~~~~~~~iF~~f~~~~~~~---~~ 303 (394)
T 2btz_A 234 HMLFELFKNAMRATVESHES-------SLILPPIKVMVALGEEDLSIKMSDRGGGVPLRKIERLFSYMYSTAPTP---QP 303 (394)
T ss_dssp HHHHHHHHHHHHHHHHTTTT-------CSCCCCEEEEEEECSSEEEEEEEECSCCCCHHHHHHHTCTTTTCCC-------
T ss_pred HHHHHHHHHHHHHhhhcccc-------CCCCCCEEEEEEeCCCEEEEEEEeCCCCCCHHHHHHHhcccccCCCCC---Cc
Confidence 46789999999997531000 001134555555555556799999999999999987654322211000 00
Q ss_pred hhcccCCCCCccccccccccceecccccEEEEEEecCCCCCeEEEEEccCCceEEEEccCCCCCCCCCCeEEEEEecC
Q 003827 186 KENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADSSSYVIREETDPEKLLKRGTQITLYLKE 263 (793)
Q Consensus 186 ~~~~~~~~d~~~IGqFGIGf~S~F~VadkV~V~Tr~~~~~~~~~w~s~~~~~~~i~~~~~~~~~~~~~GT~I~L~Lk~ 263 (793)
+......+.+|+|++-|-.+++ ..+ |...+... .+.||+++|+|.-
T Consensus 304 ------~~~~~~~~G~GLGL~i~~~i~~-------~~g------------G~i~v~s~-------~g~Gt~f~i~lP~ 349 (394)
T 2btz_A 304 ------GTGGTPLAGFGYGLPISRLYAK-------YFQ------------GDLQLFSM-------EGFGTDAVIYLKA 349 (394)
T ss_dssp ----------------CCHHHHHHHHHH-------HTT------------CEEEEEEE-------TTTEEEEEEEEES
T ss_pred ------ccCCCCCCCccCCHHHHHHHHH-------HhC------------CEEEEEec-------CCCceEEEEEecC
Confidence 0012345678999987777643 222 33334332 2579999999864
No 45
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus}
Probab=97.30 E-value=0.00026 Score=72.56 Aligned_cols=51 Identities=20% Similarity=0.244 Sum_probs=37.0
Q ss_pred HHHHHhHhhHhhHHHhhhhhhccCCCCCCCCCCceEEEEECCCCcEEEEEeCCCCCCHHHHHHHH
Q 003827 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCL 170 (793)
Q Consensus 106 vflRELIsNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~eeL~~~L 170 (793)
.++.+||.||+++.. ..+.+.|.+..+.+.-.|+|.|||.||+.+++...+
T Consensus 158 ~il~nLl~NA~~~~~--------------~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if 208 (268)
T 4ew8_A 158 QTLDHLVENALRQTP--------------PGGRVTLSARRALGEVRLDVSDTGRGVPFHVQAHIF 208 (268)
T ss_dssp HHHHHHHHHHHHHSC--------------TTCEEEEEEEECSSEEEEEEEESSCCCCHHHHTTTT
T ss_pred HHHHHHHHHHHHhCC--------------CCCEEEEEEEecCCEEEEEEEcCCCCCCHHHHHHHH
Confidence 478999999999842 124455555555555689999999999998876433
No 46
>1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A
Probab=97.24 E-value=0.00029 Score=65.91 Aligned_cols=49 Identities=18% Similarity=0.176 Sum_probs=36.0
Q ss_pred HHHHHhHhhHhhHHHhhhhhhccCCCCCCCCCCceEEEEECCCCcEEEEEeCCCCCCHHHHHHHH
Q 003827 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCL 170 (793)
Q Consensus 106 vflRELIsNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~eeL~~~L 170 (793)
..+.+||.||..+.. ..+.|.+..+.+.-.|+|.|||.||+.+++...+
T Consensus 47 ~il~nLl~NAi~~~~----------------~~i~i~~~~~~~~~~i~i~D~G~gi~~~~~~~~f 95 (152)
T 1id0_A 47 EVMGNVLDNACKYCL----------------EFVEISARQTDEHLYIVVEDDGPGIPLSKREVIF 95 (152)
T ss_dssp HHHHHHHHHHHHHCS----------------SEEEEEEEECSSCEEEEEEESSSCCCGGGTTGGG
T ss_pred HHHHHHHHHHHHhCc----------------CeEEEEEEecCCEEEEEEEeCCCCcCHHHHHHHh
Confidence 366799999999841 2345555555556789999999999998876443
No 47
>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A*
Probab=97.24 E-value=0.00043 Score=76.38 Aligned_cols=117 Identities=21% Similarity=0.207 Sum_probs=68.6
Q ss_pred HHHHHhHhhHhhHHHhhhhhhccCCCCCCCCCCceEEEEECCCCcEEEEEeCCCCCCHHHHHHHHhhhcccCchhHHHHh
Q 003827 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKAL 185 (793)
Q Consensus 106 vflRELIsNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~eeL~~~L~tIa~Sgt~~f~~~l 185 (793)
.+|.+||+||+.|...-.-.. ...+.+.|.+..+.+.-.|+|.|+|.||+.+++..-|...-+..... ..
T Consensus 233 ~il~NLl~NAik~~~~~~~~~-------~~~~~I~I~~~~~~~~v~i~V~D~G~GI~~~~~~~if~~f~~~~~~~---~~ 302 (394)
T 2e0a_A 233 HMLFELFKNAMRATVEHQENQ-------PSLTPIEVIVVLGKEDLTIKISDRGGGVPLRIIDRLFSYTYSTAPTP---VM 302 (394)
T ss_dssp HHHHHHHHHHHHHHHHHTTTS-------SSCCCEEEEEEECSSEEEEEEEECSCCCCGGGHHHHTSTTCCSSCCC-----
T ss_pred HHHHHHHHHHHHHHHhccccc-------CCCCCEEEEEEeCCCEEEEEEEeCCCCcCHHHHHHHhCcCccCCCCC---Cc
Confidence 467899999999975311000 01234555555555556899999999999999987654322221000 00
Q ss_pred hhcccCCCCCccccccccccceecccccEEEEEEecCCCCCeEEEEEccCCceEEEEccCCCCCCCCCCeEEEEEecC
Q 003827 186 KENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADSSSYVIREETDPEKLLKRGTQITLYLKE 263 (793)
Q Consensus 186 ~~~~~~~~d~~~IGqFGIGf~S~F~VadkV~V~Tr~~~~~~~~~w~s~~~~~~~i~~~~~~~~~~~~~GT~I~L~Lk~ 263 (793)
. .......+.+|+|++-|-.+++ ..+ |...+... .+.||+++|+|.-
T Consensus 303 ~-----~~~~~~~~G~GLGL~i~~~i~~-------~~g------------G~i~v~s~-------~g~Gt~f~i~lP~ 349 (394)
T 2e0a_A 303 D-----NSRNAPLAGFGYGLPISRLYAK-------YFQ------------GDLNLYSL-------SGYGTDAIIYLKA 349 (394)
T ss_dssp ---------CCCSSCSSCHHHHHHHHHH-------HTT------------CEEEEEEE-------TTTEEEEEEEEES
T ss_pred C-----cCCCCCCCCcccCHHHHHHHHH-------HhC------------CEEEEEec-------CCccEEEEEEeCC
Confidence 0 0022345678999987776643 122 23334332 2579999999864
No 48
>3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat fold, TR; HET: ATP; 1.61A {Bacillus subtilis}
Probab=97.23 E-value=0.00011 Score=70.95 Aligned_cols=78 Identities=23% Similarity=0.354 Sum_probs=48.0
Q ss_pred HHHHhHhhHhhHHHhhhhhhccCCCCCCCCCCceEEEEECCC--CcEEEEEeCCCCCCHHHHHHHHhhhcccCchhHHHH
Q 003827 107 FLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPE--NGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKA 184 (793)
Q Consensus 107 flRELIsNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~--~~~l~I~DnGiGMt~eeL~~~L~tIa~Sgt~~f~~~ 184 (793)
+|.+||.||+.+.. ..+.+.|.+..... .-.|+|.|||.||+.+++...+....++. .
T Consensus 47 il~nLl~NAi~~~~--------------~~~~i~I~i~~~~~~~~~~i~V~D~G~gi~~~~~~~lf~~~~~~~-~----- 106 (177)
T 3sl2_A 47 VLDNIISNALKYSP--------------EGGHVTFSIDVNEEEELLYISVKDEGIGIPKKDVEKVFDRFYRVD-K----- 106 (177)
T ss_dssp HHHHHHHHHHHTCC--------------TTCCEEEEEEEETTTTEEEEEEECCSSCCCTTTTTTTTSTTCCCC-------
T ss_pred HHHHHHHHHHHhCC--------------CCCeEEEEEEEccCCCEEEEEEEECCCCCCHHHHHHHHhhhccCC-C-----
Confidence 67889999998841 22455666654433 35689999999999988765443222111 0
Q ss_pred hhhcccCCCCCccccccccccceecccc
Q 003827 185 LKENNDLGADNGLIGQFGVGFYSAFLVA 212 (793)
Q Consensus 185 l~~~~~~~~d~~~IGqFGIGf~S~F~Va 212 (793)
......+..|+|++.+-.++
T Consensus 107 --------~~~~~~~g~GlGL~iv~~~~ 126 (177)
T 3sl2_A 107 --------ARTRKLGGTGLGLAIAKEMV 126 (177)
T ss_dssp -------------CCCCCCHHHHHHHHH
T ss_pred --------CCCCCCCCCCcCHHHHHHHH
Confidence 01122356899988776664
No 49
>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A
Probab=97.20 E-value=0.00054 Score=75.92 Aligned_cols=117 Identities=18% Similarity=0.169 Sum_probs=68.0
Q ss_pred HHHHHhHhhHhhHHHhhhhhhccCCCCCCCCCCceEEEEECCCCcEEEEEeCCCCCCHHHHHHHHhhhcccCchhHHHHh
Q 003827 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKAL 185 (793)
Q Consensus 106 vflRELIsNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~eeL~~~L~tIa~Sgt~~f~~~l 185 (793)
.+|.+||.||+.|...-.-. ....+.+.|.+..+.+.-.|+|.|||.||+.+++..-|...-+....
T Consensus 246 ~il~NLl~NAik~t~~~~~~-------~~~~~~I~I~~~~~~~~v~i~V~D~G~GI~~e~~~~if~~f~~~~~~------ 312 (407)
T 2q8g_A 246 HMVFELFKNAMRATMEHHAN-------RGVYPPIQVHVTLGNEDLTVKMSDRGGGVPLRKIDRLFNYMYSTAPR------ 312 (407)
T ss_dssp HHHHHHHHHHHHHHHHHSTT-------TCCCCCEEEEEEECSSEEEEEEEECSCCCCHHHHGGGGCTTTTCCCC------
T ss_pred HHHHHHHHHHHHHHhhcccc-------CCCCCCEEEEEEeCCCEEEEEEEecCCCCCHHHHHHHhCccccCCCC------
Confidence 46789999999997531100 01123455555555555679999999999999987655322211100
Q ss_pred hhcccCCCCCccccccccccceecccccEEEEEEecCCCCCeEEEEEccCCceEEEEccCCCCCCCCCCeEEEEEecC
Q 003827 186 KENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADSSSYVIREETDPEKLLKRGTQITLYLKE 263 (793)
Q Consensus 186 ~~~~~~~~d~~~IGqFGIGf~S~F~VadkV~V~Tr~~~~~~~~~w~s~~~~~~~i~~~~~~~~~~~~~GT~I~L~Lk~ 263 (793)
. .. ........|.+|+|++-|-.+++ ..+ |...+... .+.||+++|+|.-
T Consensus 313 ~-~~-~~~~~~~~~G~GLGL~Ivr~i~~-------~~g------------G~i~v~s~-------~g~Gt~f~i~LP~ 362 (407)
T 2q8g_A 313 P-RV-ETSRAVPLAGFGYGLPISRLYAQ-------YFQ------------GDLKLYSL-------EGYGTDAVIYIKA 362 (407)
T ss_dssp C-CS-SCCSCCCSSCTTCHHHHHHHHHH-------HTT------------CEEEEEEE-------TTTEEEEEEEEES
T ss_pred C-Cc-cccCCCCCCCcCCCHHHHHHHHH-------HhC------------CEEEEEEc-------CCCceEEEEEECC
Confidence 0 00 00112345778999987766643 122 23334332 2579999999854
No 50
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus}
Probab=97.19 E-value=0.00029 Score=70.74 Aligned_cols=75 Identities=27% Similarity=0.385 Sum_probs=49.6
Q ss_pred HHHHHhHhhHhhHHHhhhhhhccCCCCCCCCCCceEEEEECCCCcEEEEEeCCCCCCHHHHHHHHhhhcccCchhHHHHh
Q 003827 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKAL 185 (793)
Q Consensus 106 vflRELIsNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~eeL~~~L~tIa~Sgt~~f~~~l 185 (793)
.++.+||.||+.+.. ..+.+.|.+..+.+.-.|+|.|||.||+.+++...+... .++
T Consensus 126 ~il~nLl~NA~~~~~--------------~~~~i~i~~~~~~~~~~i~i~D~G~gi~~~~~~~if~~~-~~~-------- 182 (244)
T 3d36_A 126 QCLLNVMKNAIEAMP--------------NGGTLQVYVSIDNGRVLIRIADTGVGMTKEQLERLGEPY-FTT-------- 182 (244)
T ss_dssp HHHHHHHHHHHHTCT--------------TCEEEEEEEEEETTEEEEEEEECSSCCCHHHHHHTTSTT-CCS--------
T ss_pred HHHHHHHHHHHHhcc--------------CCCeEEEEEEEeCCEEEEEEEecCCCCCHHHHHHHhccc-ccC--------
Confidence 467899999998842 124455666566556789999999999999887544221 110
Q ss_pred hhcccCCCCCccccccccccceeccccc
Q 003827 186 KENNDLGADNGLIGQFGVGFYSAFLVAQ 213 (793)
Q Consensus 186 ~~~~~~~~d~~~IGqFGIGf~S~F~Vad 213 (793)
...+..|+|++.|-.+++
T Consensus 183 ----------~~~~g~GlGL~i~~~i~~ 200 (244)
T 3d36_A 183 ----------KGVKGTGLGMMVVYRIIE 200 (244)
T ss_dssp ----------SGGGCCSCHHHHHHHHHH
T ss_pred ----------CCCCCcchhHHHHHHHHH
Confidence 012457999987776643
No 51
>1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli BL21} SCOP: d.122.1.3
Probab=97.14 E-value=0.00023 Score=67.58 Aligned_cols=74 Identities=16% Similarity=0.252 Sum_probs=48.4
Q ss_pred HHHHhHhhHhhHHHhhhhhhccCCCCCCCCCCceEEEEECCCCcEEEEEeCCCCCCHHHHHHHHhhhcccCchhHHHHhh
Q 003827 107 FLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKALK 186 (793)
Q Consensus 107 flRELIsNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~eeL~~~L~tIa~Sgt~~f~~~l~ 186 (793)
+|.+||+||+.+. .+.+.|.+..+.+.-.|.|.|||.||+.+++...+....++
T Consensus 51 il~nll~NAik~~----------------~~~I~i~~~~~~~~~~i~i~D~G~gi~~~~~~~~f~~f~~~---------- 104 (161)
T 1bxd_A 51 AVANMVVNAARYG----------------NGWIKVSSGTEPNRAWFQVEDDGPGIAPEQRKHLFQPFVRG---------- 104 (161)
T ss_dssp HHHHHHHHHHTTC----------------CSCEEEEEEEETTEEEEEEEEESSCSCTTGGGCSSCCCCCC----------
T ss_pred HHHHHHHHHHhhc----------------CCeEEEEEEEcCCEEEEEEEeCCCCCCHHHHHHhCCCceeC----------
Confidence 5678999998772 24556666655556679999999999998876433221111
Q ss_pred hcccCCCCCccccccccccceecccc
Q 003827 187 ENNDLGADNGLIGQFGVGFYSAFLVA 212 (793)
Q Consensus 187 ~~~~~~~d~~~IGqFGIGf~S~F~Va 212 (793)
.....-+..|+|++-|-.++
T Consensus 105 ------~~~~~~~g~GlGL~i~~~~~ 124 (161)
T 1bxd_A 105 ------DSARTISGTGLGLAIVQRIV 124 (161)
T ss_dssp ------SCCCCCCCCSCCCCTTHHHH
T ss_pred ------CCCCCCCCcccCHHHHHHHH
Confidence 01111256899998877664
No 52
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A*
Probab=97.12 E-value=0.00024 Score=78.07 Aligned_cols=61 Identities=25% Similarity=0.301 Sum_probs=40.2
Q ss_pred hHHHHHhHhhHhhHHHhhhhhhccCCCCCCCCCCceEEEEECCCCcEEEEEeCCCCCCHHHHHHHHh
Q 003827 105 EVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLG 171 (793)
Q Consensus 105 ~vflRELIsNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~eeL~~~L~ 171 (793)
...|.+||.||+.|.....- ......+.+.|.+..+.+.-.|+|.|||.||+.+++..-|.
T Consensus 240 ~~il~NLl~NAik~~~~~~~------~~~~~~~~I~I~~~~~~~~v~i~V~D~G~GI~~~~~~~iF~ 300 (388)
T 1gkz_A 240 DYILPELLKNAMRATMESHL------DTPYNVPDVVITIANNDVDLIIRISDRGGGIAHKDLDRVMD 300 (388)
T ss_dssp HHHHHHHHHHHHHHHHHTCT------TCTTSCCCEEEEEEECSSEEEEEEECCSCCCCTTTTTTTTS
T ss_pred HHHHHHHHHHHHHHhhcccc------CCCCCCCCEEEEEEeCCCEEEEEEEEeCCCcCHHHHHHhcC
Confidence 35789999999999753100 00001124556555555556799999999999998875443
No 53
>1i58_A Chemotaxis protein CHEA; beta-alpha sandwich, signaling protein, transferase; HET: ACP ADP; 1.60A {Thermotoga maritima} SCOP: d.122.1.3 PDB: 1i59_A* 1i5a_A* 1i5b_A* 1i5c_A* 1i5d_A*
Probab=97.11 E-value=0.00025 Score=69.23 Aligned_cols=59 Identities=24% Similarity=0.281 Sum_probs=34.8
Q ss_pred HHHHhHhhHhhHHHhhhhhhccCCCCCCCCCCceEEEEECCCCcEEEEEeCCCCCCHHHHH
Q 003827 107 FLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELV 167 (793)
Q Consensus 107 flRELIsNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~eeL~ 167 (793)
+|.+||.||+.+............ ....+.+.|.+..+.+.-.|+|.|||.||+.+++.
T Consensus 51 il~nLl~NAik~~~~~~~~~~~~~--~~~~~~I~I~~~~~~~~~~i~V~D~G~Gi~~~~~~ 109 (189)
T 1i58_A 51 PLLHLLRNAIDHGIEPKEERIAKG--KPPIGTLILSARHEGNNVVIEVEDDGRGIDKEKII 109 (189)
T ss_dssp HHHHHHHHHHHHTSCCHHHHHHHT--SCSSEEEEEEEEEETTEEEEEEEECSSCCCHHHHH
T ss_pred HHHHHHHHHHHhhhcccccccccc--CCCCCeEEEEEEecCCEEEEEEEeCCCCcCHHHHh
Confidence 478999999999411000000000 01123344444445455679999999999999874
No 54
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A*
Probab=97.10 E-value=0.00058 Score=76.09 Aligned_cols=118 Identities=19% Similarity=0.196 Sum_probs=65.5
Q ss_pred HHHHHhHhhHhhHHHhhhhhhccCCCCCCCCCCceEEEEECCCCcEEEEEeCCCCCCHHHHHHHHhhhcccCchhHHHHh
Q 003827 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKAL 185 (793)
Q Consensus 106 vflRELIsNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~eeL~~~L~tIa~Sgt~~f~~~l 185 (793)
.+|.+||+||+.|.....-. .. ...+.+.|.+..+.+.-.|+|.|||.||+++++..-|...-+. ... ..+
T Consensus 256 ~vl~NLl~NAik~~~~~~~~---~~---~~~~~I~I~~~~~~~~v~I~V~D~G~GI~~e~l~~iF~~f~~~-~~~--~~~ 326 (419)
T 1y8o_A 256 HMLFELFKNSMRATVELYED---RK---EGYPAVKTLVTLGKEDLSIKISDLGGGVPLRKIDRLFNYMYST-APR--PSL 326 (419)
T ss_dssp HHHHHHHHHHHHHHHHHHTT---CS---SCCCCEEEEEEECSSEEEEEEEECSCCCCHHHHGGGGCTTTC----------
T ss_pred HHHHHHHHHHHHHHHhhccc---cC---CCCCCEEEEEEeCCCEEEEEEEECCCCCCHHHHHHHhCccccc-CCC--CCc
Confidence 46789999999997532100 00 0012455555555555689999999999999987655332221 100 000
Q ss_pred hhcccCCCCCccccccccccceecccccEEEEEEecCCCCCeEEEEEccCCceEEEEccCCCCCCCCCCeEEEEEecC
Q 003827 186 KENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADSSSYVIREETDPEKLLKRGTQITLYLKE 263 (793)
Q Consensus 186 ~~~~~~~~d~~~IGqFGIGf~S~F~VadkV~V~Tr~~~~~~~~~w~s~~~~~~~i~~~~~~~~~~~~~GT~I~L~Lk~ 263 (793)
. .......+.+|+|++-|-.+++ ..+ |...+... .+.||+++|+|.-
T Consensus 327 ~-----~~~~~~~~G~GLGL~I~k~iv~-------~~g------------G~I~v~s~-------~g~Gt~f~i~LP~ 373 (419)
T 1y8o_A 327 E-----PTRAAPLAGFGYGLPISRLYAR-------YFQ------------GDLKLYSM-------EGVGTDAVIYLKA 373 (419)
T ss_dssp -----------CC--CTTHHHHHHHHHH-------HTT------------CEEEEEEE-------TTTEEEEEEEEES
T ss_pred c-----ccCCCCcCCeecCHHHHHHHHH-------HhC------------CEEEEEec-------CCCCEEEEEEecC
Confidence 0 0012345678999987766643 122 33444332 2579999999854
No 55
>1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3 PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A*
Probab=97.07 E-value=0.00058 Score=63.90 Aligned_cols=84 Identities=18% Similarity=0.230 Sum_probs=50.1
Q ss_pred HHHHHhHhhHhhHHHhhhhhhccCCCCCCCCCCceEEEEECCCCcEEEEEeCCCCCCHHHHHHHHhhhcccCchhHHHHh
Q 003827 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKAL 185 (793)
Q Consensus 106 vflRELIsNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~eeL~~~L~tIa~Sgt~~f~~~l 185 (793)
.++.|||.||+.+.... ...+.+.|.+..+.+.-.|+|.|||.||+ ++...+... .++
T Consensus 42 ~il~~l~~Nai~h~~~~-----------~~~~~I~i~~~~~~~~~~i~V~D~G~g~~--~~~~~~~~~-~~~-------- 99 (145)
T 1th8_A 42 TVVSEAVTNAIIHGYNN-----------DPNGIVSISVIIEDGVVHLTVRDEGVGIP--DIEEARQPL-FTT-------- 99 (145)
T ss_dssp HHHHHHHHHHHHTTSTT-----------CTTSEEEEEEEEETTEEEEEEEECSSCCS--CHHHHTCCC------------
T ss_pred HHHHHHHHHHHHHhcCC-----------CCCCEEEEEEEEeCCEEEEEEEECCCCcC--hHHHhhccc-ccC--------
Confidence 47899999999874210 01244555555555556799999999999 554433211 110
Q ss_pred hhcccCCCCCccccccccccceecccccEEEEEEe
Q 003827 186 KENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTK 220 (793)
Q Consensus 186 ~~~~~~~~d~~~IGqFGIGf~S~F~VadkV~V~Tr 220 (793)
. ...+..|+|++-+-.+++++.+.+.
T Consensus 100 -------~--~~~~~~GlGL~iv~~~~~~i~~~~~ 125 (145)
T 1th8_A 100 -------K--PELERSGMGFTIMENFMDEVIVESE 125 (145)
T ss_dssp -------------CCCSCHHHHHHHHSSEEEEEEE
T ss_pred -------C--CCCCCCcchHHHHHHHHheEEEEeC
Confidence 0 0123579999888777775555443
No 56
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A*
Probab=96.93 E-value=0.00054 Score=70.09 Aligned_cols=80 Identities=19% Similarity=0.187 Sum_probs=45.9
Q ss_pred HHHHHhHhhHhhHHHhhhhhhccCCCCCCCCCCceEEEEE--CCCCcEEEEEeCCCCCCHHHHHHHHhhhcccCchhHHH
Q 003827 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKP--DPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLK 183 (793)
Q Consensus 106 vflRELIsNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~--d~~~~~l~I~DnGiGMt~eeL~~~L~tIa~Sgt~~f~~ 183 (793)
.++..||+||+.+... ......|.|.+ ..+.-.|+|.|||+||+.+++...|....+.. .
T Consensus 141 ~il~NLl~NAik~~~~-------------~~~~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~-~---- 202 (258)
T 2c2a_A 141 QVLLNLLNNGVKYSKK-------------DAPDKYVKVILDEKDGGVLIIVEDNGIGIPDHAKDRIFEQFYRVD-S---- 202 (258)
T ss_dssp HHHHHHHHHHHHTCCT-------------TCTTCEEEEEEEEETTEEEEEEEECSSCCCGGGTTGGGSTTCCCC------
T ss_pred HHHHHHHHHHHhcCcC-------------CCCceeEEEEEecCCCeEEEEEEecCCCCCHHHHHhhccccccCC-C----
Confidence 3677899999988421 11223455544 44446789999999999998865443322211 0
Q ss_pred HhhhcccCCCCCccccccccccceecccc
Q 003827 184 ALKENNDLGADNGLIGQFGVGFYSAFLVA 212 (793)
Q Consensus 184 ~l~~~~~~~~d~~~IGqFGIGf~S~F~Va 212 (793)
......+..|+|++-|-.++
T Consensus 203 ---------~~~~~~~G~GLGL~i~~~iv 222 (258)
T 2c2a_A 203 ---------SLTYEVPGTGLGLAITKEIV 222 (258)
T ss_dssp -----------------CCCTHHHHHHHH
T ss_pred ---------CCCCCCCCcchHHHHHHHHH
Confidence 00112245799998776663
No 57
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae}
Probab=96.92 E-value=0.0033 Score=78.46 Aligned_cols=127 Identities=20% Similarity=0.223 Sum_probs=74.1
Q ss_pred HHHHHhHhhHhh-HHHhhhhhhccCCCCCCCCCCceEEEEECCCCcEEEEEeCCCCCCHHH--------HHHHHhhhccc
Q 003827 106 VFLRELVSNASD-ALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEE--------LVDCLGTIAQS 176 (793)
Q Consensus 106 vflRELIsNA~D-A~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~ee--------L~~~L~tIa~S 176 (793)
..+.|.|.||+| |+. +...-.|.|.++.+++.|+|+|||-||+-+. +.-.|+++-.+
T Consensus 62 hl~~EildNsiDea~a--------------g~~~~~I~V~i~~~d~sisV~DnGRGIPvd~h~~~~~~~~Evv~t~LhAG 127 (1177)
T 4gfh_A 62 KIFDEILVNAADNKVR--------------DPSMKRIDVNIHAEEHTIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTS 127 (1177)
T ss_dssp HHHHHHHHHHHHHHHH--------------CTTCCEEEEEEETTTTEEEEEECSSCCCCSBCTTTCSBHHHHHHHSSSEE
T ss_pred eEeeEEEEChHhHHhh--------------CCCCCeEEEEEECCCCEEEEEecCCcccccccCCCCCEeeeeeccccccc
Confidence 357899999999 432 1112368888887788999999999997531 11123333333
Q ss_pred CchhHHHHhhhcccCCCCCccccccccccceecccccEEEEEEecCCCCCeEEEEEccCCc----eEEEEccCCCCCCCC
Q 003827 177 GTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADSS----SYVIREETDPEKLLK 252 (793)
Q Consensus 177 gt~~f~~~l~~~~~~~~d~~~IGqFGIGf~S~F~VadkV~V~Tr~~~~~~~~~w~s~~~~~----~~i~~~~~~~~~~~~ 252 (793)
|+ | . .+.-.-.-|.-|||.--+=.++.++.|++.....+..|.-.-..+.. -.+... ....
T Consensus 128 gK--F----d----~~~ykvSGGLHGVG~svVNALS~~~~vev~~~r~Gk~y~q~f~~g~~~~~~~~i~~~-----~~~~ 192 (1177)
T 4gfh_A 128 SN--Y----D----DDEKKVTGGRNGYGAKLCNIFSTEFILETADLNVGQKYVQKWENNMSICHPPKITSY-----KKGP 192 (1177)
T ss_dssp SC--C----C----CSSCCCCSCCSSCHHHHHHHTEEEEEEEEEETTTTEEEEEEEETTTTEECCCEEEEC-----CSSC
T ss_pred cC--c----C----CCCCeEeccCCChhhhHHhhcCCceEEEEEEEcCCEEEEEEEECCcccCCCCeeecC-----CCCC
Confidence 32 2 1 11122345889999866777888888877543333444322222211 122222 1346
Q ss_pred CCeEEEEEe
Q 003827 253 RGTQITLYL 261 (793)
Q Consensus 253 ~GT~I~L~L 261 (793)
.||+|+..-
T Consensus 193 tGT~V~F~P 201 (1177)
T 4gfh_A 193 SYTKVTFKP 201 (1177)
T ss_dssp CCEEEEEEE
T ss_pred CceEEEEEe
Confidence 899998763
No 58
>1b3q_A Protein (chemotaxis protein CHEA); histine kinase, signal transduction, multi-domai protein, transferase; 2.60A {Thermotoga maritima} SCOP: a.30.2.1 b.40.7.1 d.122.1.3 PDB: 2ch4_A* 3ur1_A
Probab=96.70 E-value=0.0018 Score=71.36 Aligned_cols=55 Identities=25% Similarity=0.289 Sum_probs=34.5
Q ss_pred HHHHhHhhHhhHHH----hhhhhhccCCCCCCCCCCceEEEEECCCCcEEEEEeCCCCCCHHHHH
Q 003827 107 FLRELVSNASDALD----KLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELV 167 (793)
Q Consensus 107 flRELIsNA~DA~~----k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~eeL~ 167 (793)
.+.+||.||+|+.- .|+... . ...+.+.|++..+.+.-.|+|.|||.||+.+.+.
T Consensus 110 ~l~nLl~NAi~h~~e~~~~r~~~g--k----~~~g~I~i~~~~~~~~v~i~V~D~G~Gi~~~~~~ 168 (379)
T 1b3q_A 110 PLLHLLRNAIDHGIEPKEERIAKG--K----PPIGTLILSARHEGNNVVIEVEDDGRGIDKEKII 168 (379)
T ss_dssp HHHHHHHHHHHHTSCCHHHHHHTT--C----CSSEEEEEEEEEETTEEEEEEEECSCCCCHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHhcC--C----CCCcEEEEEEEEeCCEEEEEEEECCCCCCHHHHH
Confidence 38899999999951 111000 0 0123334444444445678999999999999884
No 59
>3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A
Probab=96.65 E-value=0.0016 Score=60.43 Aligned_cols=50 Identities=20% Similarity=0.254 Sum_probs=35.8
Q ss_pred HHHHhHhhHhhHHHhhhhhhccCCCCCCCCCCceEEEEECCCCcEEEEEeCCCCCCHHHHHHHH
Q 003827 107 FLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCL 170 (793)
Q Consensus 107 flRELIsNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~eeL~~~L 170 (793)
++.+||.||+.+.. ..+.+.|.+..+.+.-.|+|.|||.||+.+++...+
T Consensus 51 il~nll~NAi~~~~--------------~~~~I~i~~~~~~~~~~i~i~D~G~g~~~~~~~~~f 100 (152)
T 3a0y_A 51 VLINLVQNAIEATG--------------ENGKIKITSEDMYTKVRVSVWNSGPPIPEELKEKIF 100 (152)
T ss_dssp HHHHHHHHHHHHHC--------------TTCEEEEEEEECSSEEEEEEEEESCCCCGGGTTGGG
T ss_pred HHHHHHHHHHHhcC--------------CCCEEEEEEEecCCEEEEEEEeCCCCcCHHHHHhHh
Confidence 56789999999862 124445555555455679999999999998876443
No 60
>3ehg_A Sensor kinase (YOCF protein); GHL ATPase domain, transferase; HET: ATP; 1.74A {Bacillus subtilis}
Probab=96.07 E-value=0.0034 Score=57.46 Aligned_cols=45 Identities=24% Similarity=0.227 Sum_probs=32.6
Q ss_pred HHHHhHhhHhhHHHhhhhhhccCCCCCCCCCCceEEEEECCCCcEEEEEeCCCCCCHHHH
Q 003827 107 FLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEEL 166 (793)
Q Consensus 107 flRELIsNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~eeL 166 (793)
.++|||+||..+. ....+.|++..+.+.-.|+|.|||.||+.+++
T Consensus 44 il~nll~Na~k~~---------------~~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~ 88 (128)
T 3ehg_A 44 CLKEAVTNVVKHS---------------QAKTCRVDIQQLWKEVVITVSDDGTFKGEENS 88 (128)
T ss_dssp HHHHHHHHHHHHT---------------CCSEEEEEEEEETTEEEEEEEESSCCCSCSSC
T ss_pred HHHHHHHHHHhcC---------------CCcEEEEEEEEeCCEEEEEEEECCcCcCcccC
Confidence 6789999999873 12345555555555568999999999986544
No 61
>3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A*
Probab=95.72 E-value=0.0078 Score=59.52 Aligned_cols=45 Identities=24% Similarity=0.227 Sum_probs=30.8
Q ss_pred HHHHhHhhHhhHHHhhhhhhccCCCCCCCCCCceEEEEECCCCcEEEEEeCCCCCCHHHH
Q 003827 107 FLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEEL 166 (793)
Q Consensus 107 flRELIsNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~eeL 166 (793)
+++|||.||..+. ..+.+.|.+..+.+.-.|+|.|||+||+.+.+
T Consensus 134 il~nll~Na~k~~---------------~~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~ 178 (218)
T 3ehh_A 134 CLKEAVTNVVKHS---------------QAKTCRVDIQQLWKEVVITVSDDGTFKGEENS 178 (218)
T ss_dssp HHHHHHHHHHHHT---------------CCSEEEEEEEEETTEEEEEEEESSCCCC----
T ss_pred HHHHHHHHHHHhC---------------CCCEEEEEEEEeCCEEEEEEEECCcCCCCCCC
Confidence 6889999998884 12345555555555668999999999998765
No 62
>3zxq_A Hypoxia sensor histidine kinase response regulato; transferase; 1.90A {Mycobacterium tuberculosis}
Probab=95.49 E-value=0.0062 Score=54.88 Aligned_cols=43 Identities=30% Similarity=0.502 Sum_probs=31.9
Q ss_pred HHHHhHhhHhhHHHhhhhhhccCCCCCCCCCCceEEEEECCCCcEEEEEeCCCCCCHHH
Q 003827 107 FLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEE 165 (793)
Q Consensus 107 flRELIsNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~ee 165 (793)
++.||++||..+. ..+.+.|.+..+.+ -.|+|.|||.||+.+.
T Consensus 43 il~nll~Na~k~~---------------~~~~i~i~~~~~~~-~~i~v~D~G~gi~~~~ 85 (124)
T 3zxq_A 43 VLREAVSNAVRHA---------------NATSLAINVSVEDD-VRVEVVDDGVGISGDI 85 (124)
T ss_dssp HHHHHHHHHHTCT---------------TCCEEEEEEEEEEE-EEEEEEECCCSSCGGG
T ss_pred HHHHHHHHHHHhC---------------CCCEEEEEEEeCCC-EEEEEEECCCCCCccc
Confidence 6789999998773 12345566655556 7899999999998654
No 63
>3zxo_A Redox sensor histidine kinase response regulator; transferase; HET: MSE; 1.90A {Mycobacterium tuberculosis}
Probab=95.43 E-value=0.0055 Score=55.56 Aligned_cols=43 Identities=42% Similarity=0.529 Sum_probs=32.5
Q ss_pred HHHHhHhhHhhHHHhhhhhhccCCCCCCCCCCceEEEEECCCCcEEEEEeCCCCCCHHH
Q 003827 107 FLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEE 165 (793)
Q Consensus 107 flRELIsNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~ee 165 (793)
++.|||+||..+. ..+.+.|++..+.+ -.|+|.|||.||+.+.
T Consensus 47 il~nll~NA~k~~---------------~~~~i~i~~~~~~~-~~i~v~D~G~gi~~~~ 89 (129)
T 3zxo_A 47 VVREAVSNAVRHA---------------AASTLTVRVKVDDD-LCIEVTDNGRGMPDEF 89 (129)
T ss_dssp HHHHHHHHCCCCS---------------SCCEEEEEEEESSE-EEEEEEECCCCCTTTT
T ss_pred HHHHHHHHHHHhC---------------CCceEEEEEEEcCC-EEEEEecCCCCCCccc
Confidence 6789999999883 12455666666666 7899999999997543
No 64
>1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transfera; 1.60A {Escherichia coli} SCOP: d.122.1.3
Probab=95.04 E-value=0.01 Score=55.32 Aligned_cols=51 Identities=24% Similarity=0.380 Sum_probs=28.3
Q ss_pred HHHHhHhhHhhHHHhhhhhhccCCCCCCCCCCceEEEEECCC----------CcEEEEEeCCCCCCHHHHHHHH
Q 003827 107 FLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPE----------NGTITITDTGIGMTKEELVDCL 170 (793)
Q Consensus 107 flRELIsNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~----------~~~l~I~DnGiGMt~eeL~~~L 170 (793)
++.+||.||..+... ..+.+.|.+..+.+ .-.|+|.|||.||+.+++...+
T Consensus 52 il~nLl~NAik~~~~-------------~~~~I~i~~~~~~~~~~~~~~~~~~~~i~v~D~G~gi~~~~~~~lf 112 (160)
T 1r62_A 52 VLLNIVRNALQALGP-------------EGGEIILRTRTAFQLTLHGERYRLAARIDVEDNGPGIPPHLQDTLF 112 (160)
T ss_dssp HHHHHHHHHHHHHGG-------------GCEEEEEEEEEEEEEEETTEEEEEEEEEEEEEECTTC---------
T ss_pred HHHHHHHHHHHHhhc-------------cCCeEEEEEeccccccccccccccEEEEEEEeCCCCCCHHHHHHhh
Confidence 567999999998631 02334444444333 4468999999999999887544
No 65
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=94.23 E-value=0.023 Score=59.96 Aligned_cols=48 Identities=21% Similarity=0.259 Sum_probs=35.8
Q ss_pred HHHHhHhhHhhHHHhhhhhhccCCCCCCCCCCceEEEEECCCCcEEEEEeCCCCCCHHHHHH
Q 003827 107 FLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVD 168 (793)
Q Consensus 107 flRELIsNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~eeL~~ 168 (793)
++.+||.||+.+.. ..+.+.|.+..+.+.-.|+|.|||+||+.+++..
T Consensus 248 vl~nLl~NA~k~~~--------------~~~~i~i~~~~~~~~~~i~v~D~G~Gi~~~~~~~ 295 (349)
T 3a0r_A 248 VLINLVQNAIEATG--------------ENGKIKITSEDMYTKVRVSVWNSGPPIPEELKEK 295 (349)
T ss_dssp HHHHHHTHHHHTTC--------------TTCCEEEEEEEETTEEEEEEEEESCCCCGGGGTT
T ss_pred HHHHHHHHHHHhcc--------------CCCEEEEEEEecCCEEEEEEEECCCCCChHHHhh
Confidence 67899999998841 2345566665555567799999999999987754
No 66
>4fpp_A Phosphotransferase; four helix bundle, bergerat fold, CCKA, CTRA, CPDR, bacterial cytoplasme; 2.20A {Caulobacter crescentus} PDB: 4fmt_A
Probab=93.38 E-value=0.057 Score=55.32 Aligned_cols=47 Identities=17% Similarity=0.135 Sum_probs=30.9
Q ss_pred HHHHhHhhHhhHHHhhhhhhccCCCCCCCCCCceEEEEECCCCcEEEEEeCCCC--CCHHHHH
Q 003827 107 FLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIG--MTKEELV 167 (793)
Q Consensus 107 flRELIsNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiG--Mt~eeL~ 167 (793)
.+.=||+||.+|.. ..+.+.|.+..+.+...|+|.|+|.| +.++.+.
T Consensus 150 vl~NLl~NA~~a~~--------------~gg~I~v~~~~~~~~~~i~V~D~G~Gi~i~~~~~~ 198 (247)
T 4fpp_A 150 AVLNIAQIAASALP--------------AGGVATVKGVAADGRFSIIADAKGPRARLRPEVLA 198 (247)
T ss_dssp HHHHHHHHHHTTCT--------------TCCEEEEEEEEETTEEEEEEEEESTTCCCCHHHHH
T ss_pred HHHHHHHHHHHhcC--------------CCCeEEEEEEEECCEEEEEEEEcCCCCCCCHHHHH
Confidence 44568888888741 23455666666666678999999977 5554433
No 67
>3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor antagonist, phosphatase serine kinase, ATPase, unknown function; 2.60A {Mycobacterium tuberculosis}
Probab=84.53 E-value=1.2 Score=48.90 Aligned_cols=74 Identities=15% Similarity=0.097 Sum_probs=43.3
Q ss_pred hHHHHHhHhhHhhHHHhhhhhhccCCCCCCCCCCceEEEEECCC-CcEEEEEeCCCCCCHHHHHHHHhhhcccCchhHHH
Q 003827 105 EVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPE-NGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLK 183 (793)
Q Consensus 105 ~vflRELIsNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~-~~~l~I~DnGiGMt~eeL~~~L~tIa~Sgt~~f~~ 183 (793)
..++.||+.||+...-. ....+.+.|++....+ .-.|+|.|+|.|++.. +.
T Consensus 299 ~l~v~El~~Nav~Ha~~-----------~~~~g~i~v~~~~~~~~~l~i~V~D~G~g~~~~-----------~~------ 350 (399)
T 3ke6_A 299 VHAISEFVENAVEHGYA-----------TDVSKGIVVAAALAGDGNVRASVIDRGQWKDHR-----------DG------ 350 (399)
T ss_dssp HHHHHHHHHHHHHHBCC-----------SCCTTCEEEEEEECTTSEEEEEEEESCBC-----------------------
T ss_pred HHHHHHHHHHHHHhccc-----------CCCCceEEEEEEEcCCCEEEEEEEECCCCCCCC-----------CC------
Confidence 46899999999988410 0123556666666543 4578999999999865 10
Q ss_pred HhhhcccCCCCCccccccccccceecccccEEEEEEe
Q 003827 184 ALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTK 220 (793)
Q Consensus 184 ~l~~~~~~~~d~~~IGqFGIGf~S~F~VadkV~V~Tr 220 (793)
. +.-|.|++-+-.+++++.+.+.
T Consensus 351 --------~------~~~G~GL~lv~~l~~~~~~~~~ 373 (399)
T 3ke6_A 351 --------A------RGRGRGLAMAEALVSEARIMHG 373 (399)
T ss_dssp --------------------CHHHHHTTSSEEEEEEE
T ss_pred --------C------CCCCcHHHHHHHHHHheeeEEC
Confidence 0 2346777767777888776543
No 68
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=66.06 E-value=5.1 Score=39.72 Aligned_cols=54 Identities=13% Similarity=0.140 Sum_probs=34.1
Q ss_pred HHhHhhHhhHHHhhhhhhccCCCCCCCCCCceEEEEEC--CCCcEEEEEeCCCCCCHHHHHHHH
Q 003827 109 RELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPD--PENGTITITDTGIGMTKEELVDCL 170 (793)
Q Consensus 109 RELIsNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d--~~~~~l~I~DnGiGMt~eeL~~~L 170 (793)
-.||.||.+|++.. . .+ .....+.|.|..+ .+.-.|.|.|+|.|++.+.+.+.|
T Consensus 111 gnLi~na~~Ai~~~----~-~~---~~~~~I~i~i~~~~~~~~l~i~V~d~G~~i~~e~~~~if 166 (192)
T 1ixm_A 111 AKLMRKLFHLFDQA----V-SR---ESENHLTVSLQTDHPDRQLILYLDFHGAFADPSAFDDIR 166 (192)
T ss_dssp HHHHHHHHHHHHHH----B-CT---TSCCEEEEEEECCCSSSSCEEEEEEESCBSCGGGCC---
T ss_pred HHHHHHHHHHHHhh----h-cc---CCCCeEEEEEEEecCCCEEEEEEEeCCCCCCHHHHHHHH
Confidence 45899999998642 0 11 1224455555555 445789999999999988766444
No 69
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=36.01 E-value=78 Score=26.99 Aligned_cols=58 Identities=16% Similarity=0.350 Sum_probs=42.2
Q ss_pred cCHHHHHHhcccCCCe-EEEEecCCHHHHhhChhHHHHHhcC--ceEEecCCCchHHHHHHHhhc
Q 003827 525 ISLDEYVENMGEKQNA-IYYLATDSLKSAKSAPFLEKLVQKD--IEVLYLIEPIDEVAIQNLQTF 586 (793)
Q Consensus 525 ~SL~eYv~rmke~Qk~-IYY~~~~s~~~~~~Sp~lE~~~~kG--~eVL~l~dpiDE~~l~~L~e~ 586 (793)
-.+.+.+..||.+-|. +.|+.|.|-.++.. |-...++.| |+||--+|| |.+.|.+++|
T Consensus 38 qdirdiiksmkdngkplvvfvngasqndvne--fqneakkegvsydvlkstdp--eeltqrvref 98 (112)
T 2lnd_A 38 QDIRDIIKSMKDNGKPLVVFVNGASQNDVNE--FQNEAKKEGVSYDVLKSTDP--EELTQRVREF 98 (112)
T ss_dssp HHHHHHHHHHTTCCSCEEEEECSCCHHHHHH--HHHHHHHHTCEEEEEECCCH--HHHHHHHHHH
T ss_pred hhHHHHHHHHHhcCCeEEEEecCcccccHHH--HHHHHHhcCcchhhhccCCH--HHHHHHHHHH
Confidence 3467888999988875 56888988666544 445556655 788888876 6677888777
Done!