Query 003829
Match_columns 793
No_of_seqs 796 out of 4139
Neff 11.3
Searched_HMMs 46136
Date Thu Mar 28 12:48:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003829.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003829hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 3.7E-79 8E-84 699.9 71.7 602 135-776 88-690 (857)
2 PLN03077 Protein ECB2; Provisi 100.0 5E-77 1.1E-81 682.3 72.2 616 134-789 52-668 (857)
3 PLN03218 maturation of RBCL 1; 100.0 5.9E-69 1.3E-73 600.0 71.3 523 205-743 367-915 (1060)
4 PLN03218 maturation of RBCL 1; 100.0 4.7E-68 1E-72 592.8 71.0 544 134-709 371-916 (1060)
5 PLN03081 pentatricopeptide (PP 100.0 3.2E-62 6.9E-67 546.5 58.5 471 134-635 88-560 (697)
6 PLN03081 pentatricopeptide (PP 100.0 2.7E-61 5.8E-66 539.1 54.7 475 207-742 86-562 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 3.6E-37 7.9E-42 364.2 84.4 641 109-789 242-882 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 1.8E-36 3.9E-41 358.2 86.8 609 136-778 230-838 (899)
9 PRK11447 cellulose synthase su 100.0 1.8E-28 3.9E-33 288.2 75.9 437 321-771 276-739 (1157)
10 PRK11447 cellulose synthase su 100.0 4.7E-26 1E-30 267.9 74.6 611 131-777 26-705 (1157)
11 PRK09782 bacteriophage N4 rece 100.0 4E-24 8.7E-29 239.0 73.6 583 145-780 56-714 (987)
12 PRK09782 bacteriophage N4 rece 100.0 8.4E-23 1.8E-27 228.5 68.9 558 180-782 51-682 (987)
13 KOG2002 TPR-containing nuclear 100.0 3E-22 6.5E-27 208.2 56.1 574 189-785 146-758 (1018)
14 KOG4626 O-linked N-acetylgluco 99.9 3.1E-24 6.6E-29 211.1 38.0 429 282-736 51-484 (966)
15 KOG4626 O-linked N-acetylgluco 99.9 1.9E-23 4.1E-28 205.6 38.5 441 317-784 51-497 (966)
16 KOG2002 TPR-containing nuclear 99.9 8.9E-21 1.9E-25 197.4 59.3 602 149-775 146-801 (1018)
17 TIGR00990 3a0801s09 mitochondr 99.9 9.4E-20 2E-24 201.6 52.7 434 280-775 128-574 (615)
18 TIGR00990 3a0801s09 mitochondr 99.9 1.3E-18 2.8E-23 192.5 53.5 432 243-737 127-571 (615)
19 PRK11788 tetratricopeptide rep 99.9 1E-19 2.2E-24 191.4 37.4 301 181-489 43-353 (389)
20 PRK11788 tetratricopeptide rep 99.9 1.8E-19 3.9E-24 189.6 36.7 301 213-521 40-350 (389)
21 KOG0495 HAT repeat protein [RN 99.9 5.9E-15 1.3E-19 147.4 64.8 582 147-775 265-883 (913)
22 KOG0495 HAT repeat protein [RN 99.9 1.1E-14 2.3E-19 145.6 64.4 583 113-748 270-890 (913)
23 PRK15174 Vi polysaccharide exp 99.9 3.2E-18 6.8E-23 188.3 44.3 357 387-775 45-406 (656)
24 PRK15174 Vi polysaccharide exp 99.9 1.2E-17 2.6E-22 183.8 48.4 330 179-518 48-381 (656)
25 KOG2076 RNA polymerase III tra 99.9 2.1E-15 4.6E-20 156.8 59.2 612 143-775 149-852 (895)
26 PRK10049 pgaA outer membrane p 99.9 3.1E-17 6.7E-22 184.7 48.9 417 313-780 14-464 (765)
27 PRK14574 hmsH outer membrane p 99.9 3.2E-16 7E-21 172.3 52.7 449 289-779 44-520 (822)
28 PRK10049 pgaA outer membrane p 99.9 1.5E-16 3.3E-21 179.1 50.9 408 135-561 17-462 (765)
29 KOG2076 RNA polymerase III tra 99.8 7.6E-15 1.7E-19 152.8 56.9 576 176-780 142-777 (895)
30 PRK14574 hmsH outer membrane p 99.8 4.2E-15 9.1E-20 163.6 53.0 474 207-716 33-525 (822)
31 KOG2003 TPR repeat-containing 99.8 1.1E-15 2.3E-20 145.9 37.3 491 205-733 198-718 (840)
32 KOG1915 Cell cycle control pro 99.8 6.1E-13 1.3E-17 128.2 52.2 396 292-735 154-583 (677)
33 KOG4422 Uncharacterized conser 99.8 5E-14 1.1E-18 133.8 43.8 343 207-570 115-479 (625)
34 KOG4422 Uncharacterized conser 99.8 7E-14 1.5E-18 132.9 42.3 453 185-686 127-609 (625)
35 KOG1915 Cell cycle control pro 99.8 1.1E-12 2.3E-17 126.6 49.7 438 172-632 72-536 (677)
36 KOG2003 TPR repeat-containing 99.7 4.3E-14 9.3E-19 135.1 35.6 261 498-775 428-692 (840)
37 KOG1173 Anaphase-promoting com 99.7 4.2E-13 9.2E-18 132.7 37.7 277 486-778 241-524 (611)
38 KOG1155 Anaphase-promoting com 99.7 4.1E-11 9E-16 115.8 44.1 382 379-789 159-551 (559)
39 KOG0547 Translocase of outer m 99.6 1.3E-12 2.7E-17 126.8 32.7 403 286-736 122-565 (606)
40 KOG1155 Anaphase-promoting com 99.6 5.4E-12 1.2E-16 121.8 34.8 332 414-772 159-495 (559)
41 PRK10747 putative protoheme IX 99.6 2E-12 4.4E-17 134.2 34.8 289 432-772 97-390 (398)
42 KOG1126 DNA-binding cell divis 99.6 2.6E-13 5.5E-18 137.3 26.4 269 490-779 354-627 (638)
43 KOG2047 mRNA splicing factor [ 99.6 4E-09 8.7E-14 106.4 55.3 550 174-772 103-719 (835)
44 KOG4162 Predicted calmodulin-b 99.6 2.8E-10 6.1E-15 117.3 47.8 518 221-784 240-795 (799)
45 TIGR00540 hemY_coli hemY prote 99.6 4.3E-12 9.4E-17 132.6 34.4 295 430-772 95-399 (409)
46 PF13429 TPR_15: Tetratricopep 99.6 9.3E-15 2E-19 145.0 13.0 261 495-771 14-276 (280)
47 KOG2047 mRNA splicing factor [ 99.6 4.7E-09 1E-13 105.9 52.4 485 280-778 103-657 (835)
48 PRK10747 putative protoheme IX 99.6 1.1E-11 2.4E-16 128.7 36.0 283 186-482 97-389 (398)
49 KOG3785 Uncharacterized conser 99.6 5.3E-11 1.1E-15 110.8 35.9 449 259-746 37-497 (557)
50 TIGR00540 hemY_coli hemY prote 99.6 9.3E-12 2E-16 130.1 35.0 286 259-551 99-397 (409)
51 KOG3785 Uncharacterized conser 99.6 3.5E-10 7.5E-15 105.5 40.6 453 290-776 33-494 (557)
52 PF13429 TPR_15: Tetratricopep 99.6 1.1E-14 2.4E-19 144.5 12.3 263 459-736 13-276 (280)
53 KOG0547 Translocase of outer m 99.6 1.5E-11 3.3E-16 119.4 32.9 228 429-666 336-565 (606)
54 KOG1173 Anaphase-promoting com 99.6 1.2E-10 2.7E-15 115.6 39.3 279 417-713 242-527 (611)
55 COG2956 Predicted N-acetylgluc 99.6 2.1E-11 4.5E-16 112.3 31.2 288 259-553 50-347 (389)
56 KOG1174 Anaphase-promoting com 99.6 2.6E-10 5.7E-15 108.5 39.3 309 451-778 191-506 (564)
57 KOG4318 Bicoid mRNA stability 99.6 4.2E-11 9E-16 124.7 36.8 246 199-469 16-286 (1088)
58 KOG4318 Bicoid mRNA stability 99.6 1.1E-10 2.4E-15 121.6 39.5 491 230-772 12-557 (1088)
59 COG2956 Predicted N-acetylgluc 99.5 4.9E-11 1.1E-15 110.0 31.7 272 146-430 48-326 (389)
60 KOG1156 N-terminal acetyltrans 99.5 2E-09 4.4E-14 108.8 45.7 419 259-701 56-510 (700)
61 KOG1126 DNA-binding cell divis 99.5 3.5E-12 7.6E-17 129.2 26.4 285 189-486 335-623 (638)
62 KOG1156 N-terminal acetyltrans 99.5 1.7E-08 3.8E-13 102.3 52.0 603 146-778 20-694 (700)
63 COG3071 HemY Uncharacterized e 99.5 1.3E-10 2.9E-15 110.8 33.3 294 432-772 97-390 (400)
64 COG3071 HemY Uncharacterized e 99.5 2.2E-10 4.7E-15 109.3 33.8 285 259-553 99-390 (400)
65 KOG1129 TPR repeat-containing 99.5 3.7E-12 8E-17 117.1 18.9 241 527-782 226-468 (478)
66 KOG0985 Vesicle coat protein c 99.5 6.1E-08 1.3E-12 102.7 52.0 144 602-769 1103-1246(1666)
67 KOG1127 TPR repeat-containing 99.5 1.5E-08 3.3E-13 107.4 47.2 611 149-779 474-1182(1238)
68 KOG4162 Predicted calmodulin-b 99.5 4.8E-08 1E-12 101.3 49.3 510 185-736 239-782 (799)
69 KOG2376 Signal recognition par 99.5 3.8E-09 8.3E-14 105.7 39.6 119 287-413 20-139 (652)
70 KOG3617 WD40 and TPR repeat-co 99.4 9.1E-08 2E-12 99.3 45.2 549 146-780 741-1367(1416)
71 PF12569 NARP1: NMDA receptor- 99.4 5.5E-08 1.2E-12 101.9 44.5 290 289-587 14-333 (517)
72 KOG1129 TPR repeat-containing 99.4 8.4E-10 1.8E-14 101.9 26.7 234 207-448 222-458 (478)
73 KOG0985 Vesicle coat protein c 99.4 1.4E-07 2.9E-12 100.2 46.2 552 175-773 608-1309(1666)
74 KOG1174 Anaphase-promoting com 99.4 7.3E-08 1.6E-12 92.3 39.7 308 381-708 191-504 (564)
75 PRK12370 invasion protein regu 99.4 6.3E-10 1.4E-14 121.0 29.8 250 187-448 275-535 (553)
76 KOG2376 Signal recognition par 99.4 1.2E-07 2.7E-12 95.2 42.4 155 504-665 356-518 (652)
77 TIGR02521 type_IV_pilW type IV 99.4 6.2E-10 1.3E-14 108.0 26.5 203 559-774 31-234 (234)
78 PRK12370 invasion protein regu 99.3 6.8E-10 1.5E-14 120.8 29.0 268 207-484 255-536 (553)
79 KOG0548 Molecular co-chaperone 99.3 2.6E-09 5.7E-14 106.0 29.8 156 609-778 304-461 (539)
80 KOG1840 Kinesin light chain [C 99.3 1.2E-09 2.7E-14 112.4 28.0 242 490-735 200-477 (508)
81 KOG1127 TPR repeat-containing 99.3 5.1E-07 1.1E-11 96.3 46.8 571 187-776 472-1108(1238)
82 TIGR02521 type_IV_pilW type IV 99.3 1.8E-09 4E-14 104.7 27.9 199 208-411 31-230 (234)
83 KOG1840 Kinesin light chain [C 99.3 1.5E-09 3.3E-14 111.8 27.1 245 524-770 199-477 (508)
84 PF12569 NARP1: NMDA receptor- 99.3 1.8E-08 3.8E-13 105.5 33.0 130 640-772 196-334 (517)
85 KOG3616 Selective LIM binding 99.2 1.1E-06 2.4E-11 90.4 42.0 56 319-376 620-675 (1636)
86 COG3063 PilF Tfp pilus assembl 99.2 8.5E-09 1.9E-13 91.2 23.1 204 561-778 37-242 (250)
87 PRK11189 lipoprotein NlpI; Pro 99.2 1.3E-08 2.8E-13 101.1 25.8 220 538-775 40-268 (296)
88 PF13041 PPR_2: PPR repeat fam 99.2 8.2E-11 1.8E-15 80.7 6.6 49 347-395 1-49 (50)
89 KOG3616 Selective LIM binding 99.2 2.4E-06 5.3E-11 87.9 40.9 170 356-550 739-908 (1636)
90 KOG0624 dsRNA-activated protei 99.1 1.8E-07 3.8E-12 87.5 29.2 302 461-780 45-378 (504)
91 KOG3617 WD40 and TPR repeat-co 99.1 5E-06 1.1E-10 86.9 42.3 481 184-737 811-1359(1416)
92 PRK11189 lipoprotein NlpI; Pro 99.1 5.3E-08 1.2E-12 96.7 27.9 95 211-308 67-161 (296)
93 COG3063 PilF Tfp pilus assembl 99.1 1.3E-07 2.9E-12 83.8 25.6 199 210-413 37-236 (250)
94 KOG4340 Uncharacterized conser 99.1 1.9E-07 4.2E-12 85.5 26.7 290 212-514 14-335 (459)
95 KOG0548 Molecular co-chaperone 99.0 1.9E-06 4.1E-11 86.2 32.3 120 610-733 365-485 (539)
96 cd05804 StaR_like StaR_like; a 99.0 2.5E-06 5.4E-11 88.6 34.9 201 172-378 5-215 (355)
97 PRK04841 transcriptional regul 99.0 2.8E-06 6E-11 100.3 39.0 345 429-778 384-766 (903)
98 KOG0624 dsRNA-activated protei 99.0 4.5E-06 9.8E-11 78.3 31.5 311 177-518 42-370 (504)
99 KOG1125 TPR repeat-containing 99.0 1.7E-07 3.6E-12 94.3 23.8 257 499-764 295-563 (579)
100 cd05804 StaR_like StaR_like; a 99.0 1.9E-06 4.1E-11 89.4 33.4 295 143-446 16-334 (355)
101 KOG4340 Uncharacterized conser 99.0 1.8E-06 3.9E-11 79.3 27.0 315 282-628 13-335 (459)
102 KOG2053 Mitochondrial inherita 98.9 0.00019 4.2E-09 76.7 53.7 525 185-735 21-606 (932)
103 PRK04841 transcriptional regul 98.9 1.1E-05 2.5E-10 95.1 39.3 377 175-554 343-761 (903)
104 KOG1914 mRNA cleavage and poly 98.9 0.00013 2.9E-09 73.3 41.8 134 171-308 18-166 (656)
105 PF04733 Coatomer_E: Coatomer 98.9 1.1E-07 2.3E-12 92.9 17.5 80 654-735 183-263 (290)
106 PF04733 Coatomer_E: Coatomer 98.9 1.2E-07 2.7E-12 92.5 17.4 257 498-779 10-272 (290)
107 KOG2053 Mitochondrial inherita 98.9 0.00029 6.3E-09 75.4 51.3 526 219-770 20-606 (932)
108 KOG1125 TPR repeat-containing 98.9 5.4E-07 1.2E-11 90.8 21.7 260 428-729 294-563 (579)
109 TIGR03302 OM_YfiO outer membra 98.8 5.9E-07 1.3E-11 86.8 20.4 171 600-775 30-235 (235)
110 KOG1914 mRNA cleavage and poly 98.8 0.00025 5.4E-09 71.4 41.8 151 540-701 347-500 (656)
111 PRK10370 formate-dependent nit 98.8 1.7E-06 3.6E-11 79.8 21.4 154 610-779 23-180 (198)
112 COG5010 TadD Flp pilus assembl 98.8 9.1E-07 2E-11 80.5 18.1 162 607-773 70-232 (257)
113 PRK15359 type III secretion sy 98.7 5.1E-07 1.1E-11 78.5 15.7 116 658-780 13-129 (144)
114 PLN02789 farnesyltranstransfer 98.7 1E-05 2.2E-10 80.2 26.7 222 536-774 49-304 (320)
115 PLN02789 farnesyltranstransfer 98.7 1.7E-05 3.7E-10 78.6 27.8 206 185-396 49-267 (320)
116 KOG1128 Uncharacterized conser 98.7 4E-06 8.6E-11 87.0 23.0 216 490-736 399-615 (777)
117 KOG1070 rRNA processing protei 98.7 1.6E-05 3.4E-10 88.3 28.0 202 243-451 1458-1666(1710)
118 KOG1070 rRNA processing protei 98.7 1.2E-05 2.5E-10 89.3 26.4 223 488-724 1457-1687(1710)
119 PRK15179 Vi polysaccharide bio 98.7 6.4E-06 1.4E-10 90.1 24.9 151 634-790 82-234 (694)
120 KOG3081 Vesicle coat complex C 98.7 1.2E-05 2.5E-10 73.3 21.8 259 496-779 15-278 (299)
121 KOG1128 Uncharacterized conser 98.7 2.6E-06 5.6E-11 88.3 20.0 223 520-773 394-617 (777)
122 KOG3060 Uncharacterized conser 98.7 2.8E-05 6.2E-10 70.2 23.8 204 572-785 25-233 (289)
123 PF12854 PPR_1: PPR repeat 98.5 1.1E-07 2.3E-12 58.2 3.9 32 309-340 2-33 (34)
124 COG5010 TadD Flp pilus assembl 98.5 3E-05 6.4E-10 70.9 20.9 160 563-735 70-229 (257)
125 TIGR03302 OM_YfiO outer membra 98.5 1.8E-05 3.8E-10 76.5 21.1 68 171-238 31-100 (235)
126 PF12854 PPR_1: PPR repeat 98.5 1.5E-07 3.2E-12 57.6 4.0 32 344-375 2-33 (34)
127 TIGR02552 LcrH_SycD type III s 98.5 5.1E-06 1.1E-10 72.1 15.4 115 660-778 5-120 (135)
128 PRK15359 type III secretion sy 98.5 7.8E-06 1.7E-10 71.1 16.2 121 624-753 14-136 (144)
129 PRK14720 transcript cleavage f 98.5 4.2E-05 9.1E-10 84.6 24.8 175 605-787 118-299 (906)
130 PRK10370 formate-dependent nit 98.5 7.9E-06 1.7E-10 75.3 16.5 125 616-744 52-179 (198)
131 KOG3081 Vesicle coat complex C 98.5 0.00018 4E-09 65.7 24.3 250 461-736 15-270 (299)
132 KOG0553 TPR repeat-containing 98.5 2.3E-06 4.9E-11 79.6 12.3 93 681-777 89-183 (304)
133 PRK15179 Vi polysaccharide bio 98.5 3.1E-05 6.6E-10 84.9 23.2 148 169-321 82-229 (694)
134 PRK14720 transcript cleavage f 98.4 0.00015 3.2E-09 80.3 26.3 237 242-535 30-268 (906)
135 TIGR02552 LcrH_SycD type III s 98.4 1.9E-05 4.2E-10 68.5 15.3 116 625-745 5-120 (135)
136 PF09976 TPR_21: Tetratricopep 98.4 2.3E-05 5E-10 68.6 15.6 126 641-770 15-145 (145)
137 COG4783 Putative Zn-dependent 98.3 0.00076 1.7E-08 67.5 27.2 240 250-518 209-454 (484)
138 PF07079 DUF1347: Protein of u 98.3 0.0045 9.7E-08 61.4 41.3 447 289-772 16-524 (549)
139 KOG3060 Uncharacterized conser 98.3 0.00023 5.1E-09 64.5 20.2 161 616-779 25-190 (289)
140 COG4783 Putative Zn-dependent 98.3 0.00012 2.6E-09 73.1 19.6 138 613-772 316-454 (484)
141 TIGR02795 tol_pal_ybgF tol-pal 98.2 3.2E-05 7E-10 65.3 12.4 105 674-778 3-111 (119)
142 PF09976 TPR_21: Tetratricopep 98.1 0.00012 2.6E-09 64.0 15.5 126 605-734 14-144 (145)
143 PRK15363 pathogenicity island 98.1 0.00017 3.6E-09 61.5 15.2 98 673-773 35-133 (157)
144 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 0.00012 2.6E-09 74.0 16.9 123 643-772 174-297 (395)
145 KOG0550 Molecular chaperone (D 98.1 0.00083 1.8E-08 65.5 20.7 283 499-788 59-367 (486)
146 cd00189 TPR Tetratricopeptide 98.0 7.4E-05 1.6E-09 60.1 11.6 96 676-774 3-99 (100)
147 PLN03088 SGT1, suppressor of 98.0 7.4E-05 1.6E-09 76.2 13.8 89 645-736 9-98 (356)
148 KOG2041 WD40 repeat protein [G 98.0 0.017 3.7E-07 60.3 29.9 152 293-479 748-903 (1189)
149 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 0.0002 4.4E-09 72.4 15.9 124 605-735 171-295 (395)
150 PRK10153 DNA-binding transcrip 98.0 0.00051 1.1E-08 73.1 19.1 142 633-778 332-488 (517)
151 PF12895 Apc3: Anaphase-promot 98.0 1.6E-05 3.5E-10 61.9 5.6 81 686-769 2-84 (84)
152 COG4700 Uncharacterized protei 97.9 0.0033 7.2E-08 54.2 19.0 134 599-736 85-221 (251)
153 PF13432 TPR_16: Tetratricopep 97.9 3.3E-05 7.2E-10 56.6 6.3 62 713-776 2-64 (65)
154 PF14938 SNAP: Soluble NSF att 97.9 0.0024 5.2E-08 63.1 21.4 151 610-777 101-268 (282)
155 PF13414 TPR_11: TPR repeat; P 97.9 4.6E-05 9.9E-10 56.7 7.2 66 707-774 2-69 (69)
156 PF07079 DUF1347: Protein of u 97.9 0.034 7.3E-07 55.5 48.6 129 613-749 389-531 (549)
157 PRK02603 photosystem I assembl 97.9 0.00041 8.9E-09 62.8 14.3 113 641-776 38-153 (172)
158 COG4700 Uncharacterized protei 97.9 0.0029 6.3E-08 54.6 17.8 134 634-771 85-221 (251)
159 TIGR00756 PPR pentatricopeptid 97.9 3E-05 6.6E-10 48.3 4.5 33 351-383 2-34 (35)
160 KOG0553 TPR repeat-containing 97.8 0.00028 6E-09 66.1 12.3 97 610-711 88-185 (304)
161 KOG1130 Predicted G-alpha GTPa 97.8 0.00047 1E-08 66.9 13.7 133 640-772 197-344 (639)
162 COG4235 Cytochrome c biogenesi 97.8 0.00081 1.8E-08 63.5 15.0 120 655-779 139-263 (287)
163 CHL00033 ycf3 photosystem I as 97.8 0.00056 1.2E-08 61.7 13.7 103 673-777 35-154 (168)
164 KOG2041 WD40 repeat protein [G 97.8 0.066 1.4E-06 56.2 29.2 204 346-583 689-902 (1189)
165 TIGR02795 tol_pal_ybgF tol-pal 97.8 0.00082 1.8E-08 56.6 13.8 98 640-737 4-105 (119)
166 PRK10153 DNA-binding transcrip 97.8 0.0034 7.3E-08 67.0 21.2 145 597-746 331-489 (517)
167 TIGR00756 PPR pentatricopeptid 97.8 4.9E-05 1.1E-09 47.4 4.6 33 210-242 2-34 (35)
168 COG3898 Uncharacterized membra 97.8 0.045 9.8E-07 53.4 31.3 251 501-775 132-395 (531)
169 PRK10866 outer membrane biogen 97.8 0.014 3E-07 55.8 23.3 67 173-240 32-101 (243)
170 PRK15363 pathogenicity island 97.8 0.00078 1.7E-08 57.5 13.0 98 638-737 35-132 (157)
171 PF05843 Suf: Suppressor of fo 97.7 0.00047 1E-08 67.7 13.1 144 604-752 2-149 (280)
172 PF10037 MRP-S27: Mitochondria 97.7 0.001 2.2E-08 67.7 15.4 120 278-397 65-186 (429)
173 PF14938 SNAP: Soluble NSF att 97.7 0.012 2.7E-07 58.1 22.9 132 179-342 41-183 (282)
174 cd00189 TPR Tetratricopeptide 97.7 0.0006 1.3E-08 54.6 11.6 93 642-736 4-96 (100)
175 PF13812 PPR_3: Pentatricopept 97.7 7.1E-05 1.5E-09 46.2 4.5 31 351-381 3-33 (34)
176 PF13812 PPR_3: Pentatricopept 97.7 6.7E-05 1.5E-09 46.3 4.1 33 209-241 2-34 (34)
177 PRK10803 tol-pal system protei 97.7 0.00059 1.3E-08 65.6 12.4 103 675-779 145-253 (263)
178 CHL00033 ycf3 photosystem I as 97.7 0.00078 1.7E-08 60.8 12.6 114 619-734 15-139 (168)
179 KOG0550 Molecular chaperone (D 97.7 0.027 5.9E-07 55.4 23.1 52 324-376 59-110 (486)
180 PF12895 Apc3: Anaphase-promot 97.7 0.0001 2.2E-09 57.3 5.8 80 651-733 2-83 (84)
181 PRK02603 photosystem I assembl 97.6 0.0027 5.9E-08 57.5 15.7 112 603-736 35-148 (172)
182 COG5107 RNA14 Pre-mRNA 3'-end 97.6 0.081 1.8E-06 52.7 38.2 132 640-775 399-534 (660)
183 PF08579 RPM2: Mitochondrial r 97.6 0.0012 2.6E-08 52.0 10.8 79 211-289 28-114 (120)
184 PF12688 TPR_5: Tetratrico pep 97.6 0.0025 5.3E-08 52.6 13.4 89 680-770 8-102 (120)
185 PF14559 TPR_19: Tetratricopep 97.6 0.00021 4.5E-09 52.9 6.5 57 719-776 2-58 (68)
186 PLN03088 SGT1, suppressor of 97.6 0.0017 3.8E-08 66.3 15.2 97 610-710 9-105 (356)
187 PF05843 Suf: Suppressor of fo 97.6 0.0012 2.6E-08 64.9 13.0 137 639-778 2-142 (280)
188 PRK10866 outer membrane biogen 97.5 0.02 4.2E-07 54.8 20.1 79 136-217 35-113 (243)
189 PF10037 MRP-S27: Mitochondria 97.5 0.0017 3.7E-08 66.1 13.2 125 597-721 60-186 (429)
190 KOG1924 RhoA GTPase effector D 97.5 0.21 4.6E-06 53.3 34.3 21 313-333 837-857 (1102)
191 KOG1130 Predicted G-alpha GTPa 97.5 0.0023 4.9E-08 62.3 12.9 133 604-736 196-343 (639)
192 PF01535 PPR: PPR repeat; Int 97.5 0.00017 3.6E-09 43.4 3.5 26 352-377 3-28 (31)
193 PF06239 ECSIT: Evolutionarily 97.5 0.0026 5.6E-08 57.1 12.1 49 207-255 46-99 (228)
194 PF01535 PPR: PPR repeat; Int 97.5 0.00016 3.4E-09 43.5 3.3 29 316-344 2-30 (31)
195 KOG2796 Uncharacterized conser 97.4 0.046 1E-06 50.3 19.8 140 605-747 179-323 (366)
196 PF13414 TPR_11: TPR repeat; P 97.4 0.00069 1.5E-08 50.2 7.4 63 672-736 2-66 (69)
197 COG4235 Cytochrome c biogenesi 97.4 0.0086 1.9E-07 56.8 15.9 122 624-750 143-267 (287)
198 PF13371 TPR_9: Tetratricopept 97.4 0.00068 1.5E-08 51.0 6.9 64 715-779 2-65 (73)
199 PF08579 RPM2: Mitochondrial r 97.4 0.0035 7.5E-08 49.5 10.3 68 328-395 39-115 (120)
200 PF13432 TPR_16: Tetratricopep 97.3 0.0011 2.3E-08 48.5 6.8 56 679-736 3-59 (65)
201 PRK15331 chaperone protein Sic 97.3 0.016 3.6E-07 49.9 14.6 97 678-777 42-138 (165)
202 PF13281 DUF4071: Domain of un 97.3 0.11 2.4E-06 52.1 22.4 173 604-778 142-340 (374)
203 KOG2114 Vacuolar assembly/sort 97.2 0.084 1.8E-06 56.9 21.8 118 283-410 338-457 (933)
204 PF04840 Vps16_C: Vps16, C-ter 97.2 0.28 6.2E-06 48.8 29.4 64 176-253 3-66 (319)
205 PF14559 TPR_19: Tetratricopep 97.2 0.0013 2.9E-08 48.5 6.5 63 184-249 2-64 (68)
206 KOG1538 Uncharacterized conser 97.2 0.089 1.9E-06 54.8 21.1 99 176-304 559-657 (1081)
207 PF13525 YfiO: Outer membrane 97.2 0.053 1.1E-06 50.5 18.3 175 174-368 6-197 (203)
208 PRK10803 tol-pal system protei 97.1 0.013 2.7E-07 56.6 14.2 99 639-743 144-250 (263)
209 PF12688 TPR_5: Tetratrico pep 97.1 0.035 7.6E-07 45.9 14.8 89 645-735 8-102 (120)
210 PF13525 YfiO: Outer membrane 97.1 0.043 9.3E-07 51.1 17.4 174 136-334 8-198 (203)
211 COG1729 Uncharacterized protei 97.1 0.0093 2E-07 55.8 12.3 105 675-780 144-252 (262)
212 KOG2796 Uncharacterized conser 97.0 0.15 3.2E-06 47.2 18.8 136 425-563 183-323 (366)
213 COG3898 Uncharacterized membra 97.0 0.38 8.3E-06 47.3 31.8 281 185-483 96-392 (531)
214 PF13424 TPR_12: Tetratricopep 97.0 0.0019 4.1E-08 49.3 6.2 63 709-771 6-74 (78)
215 PF06239 ECSIT: Evolutionarily 97.0 0.017 3.6E-07 52.0 12.5 30 366-395 120-149 (228)
216 KOG1538 Uncharacterized conser 97.0 0.064 1.4E-06 55.8 18.0 273 385-701 557-845 (1081)
217 PF08631 SPO22: Meiosis protei 96.9 0.39 8.5E-06 47.3 23.0 195 571-770 47-273 (278)
218 KOG1941 Acetylcholine receptor 96.8 0.15 3.2E-06 49.5 17.5 126 644-770 128-273 (518)
219 PF13281 DUF4071: Domain of un 96.8 0.57 1.2E-05 47.2 22.5 103 151-255 121-229 (374)
220 KOG0543 FKBP-type peptidyl-pro 96.8 0.026 5.6E-07 55.8 12.8 129 643-774 213-357 (397)
221 KOG2114 Vacuolar assembly/sort 96.8 1.2 2.5E-05 48.7 30.2 183 133-340 334-516 (933)
222 KOG1258 mRNA processing protei 96.8 0.95 2.1E-05 47.6 36.6 187 558-757 296-489 (577)
223 PF04184 ST7: ST7 protein; In 96.7 0.14 2.9E-06 52.3 17.7 108 673-780 259-383 (539)
224 PRK11906 transcriptional regul 96.7 0.059 1.3E-06 54.8 15.3 160 618-785 273-447 (458)
225 PF13424 TPR_12: Tetratricopep 96.7 0.0066 1.4E-07 46.3 7.0 63 674-736 6-74 (78)
226 COG5107 RNA14 Pre-mRNA 3'-end 96.7 0.79 1.7E-05 46.1 39.7 82 171-255 40-121 (660)
227 PRK11906 transcriptional regul 96.7 0.19 4.2E-06 51.2 18.7 132 598-735 289-434 (458)
228 PF04840 Vps16_C: Vps16, C-ter 96.7 0.81 1.8E-05 45.6 29.7 109 422-550 180-288 (319)
229 KOG0543 FKBP-type peptidyl-pro 96.7 0.041 8.8E-07 54.5 13.2 60 641-701 260-319 (397)
230 PF13371 TPR_9: Tetratricopept 96.6 0.014 3E-07 43.7 8.0 53 682-736 4-57 (73)
231 KOG1585 Protein required for f 96.6 0.2 4.3E-06 45.9 15.9 86 135-235 33-118 (308)
232 PF03704 BTAD: Bacterial trans 96.6 0.081 1.8E-06 46.3 13.8 67 677-745 66-138 (146)
233 PLN03098 LPA1 LOW PSII ACCUMUL 96.4 0.03 6.5E-07 56.8 11.1 65 635-701 72-140 (453)
234 PF13512 TPR_18: Tetratricopep 96.4 0.046 9.9E-07 46.1 10.3 63 675-737 12-76 (142)
235 PF13512 TPR_18: Tetratricopep 96.4 0.13 2.9E-06 43.3 13.0 115 643-778 15-134 (142)
236 COG0457 NrfG FOG: TPR repeat [ 96.4 0.95 2.1E-05 43.4 30.1 225 538-775 37-268 (291)
237 PF10300 DUF3808: Protein of u 96.4 0.15 3.3E-06 54.2 16.9 165 605-772 190-376 (468)
238 PRK15331 chaperone protein Sic 96.3 0.14 3E-06 44.3 12.8 89 611-701 45-133 (165)
239 KOG1941 Acetylcholine receptor 96.3 0.5 1.1E-05 46.0 17.6 131 605-735 124-273 (518)
240 COG4105 ComL DNA uptake lipopr 96.3 1 2.2E-05 42.2 20.7 180 180-378 41-233 (254)
241 KOG4555 TPR repeat-containing 96.3 0.22 4.9E-06 40.5 12.7 91 142-238 52-145 (175)
242 PLN03098 LPA1 LOW PSII ACCUMUL 96.2 0.021 4.6E-07 57.8 8.5 98 671-774 73-176 (453)
243 KOG4555 TPR repeat-containing 96.1 0.097 2.1E-06 42.5 10.2 52 683-736 53-105 (175)
244 PF13428 TPR_14: Tetratricopep 96.1 0.011 2.3E-07 38.9 4.2 36 744-779 2-37 (44)
245 PF02259 FAT: FAT domain; Int 96.1 1.3 2.8E-05 45.7 21.8 107 672-778 145-293 (352)
246 COG2976 Uncharacterized protei 96.1 0.44 9.5E-06 42.3 14.7 122 656-779 70-195 (207)
247 KOG2280 Vacuolar assembly/sort 95.9 3.4 7.4E-05 44.7 34.1 108 640-766 686-793 (829)
248 KOG1258 mRNA processing protei 95.9 3 6.5E-05 44.0 35.7 135 172-308 44-180 (577)
249 COG4105 ComL DNA uptake lipopr 95.8 1.6 3.5E-05 40.9 22.0 170 607-777 38-238 (254)
250 PF07719 TPR_2: Tetratricopept 95.8 0.017 3.7E-07 35.3 4.0 33 744-776 2-34 (34)
251 PF03704 BTAD: Bacterial trans 95.8 0.1 2.2E-06 45.7 10.3 59 175-234 64-122 (146)
252 KOG4234 TPR repeat-containing 95.8 0.11 2.4E-06 45.8 9.8 94 681-778 103-203 (271)
253 COG3118 Thioredoxin domain-con 95.7 1.5 3.2E-05 42.0 17.7 151 612-766 143-295 (304)
254 KOG2610 Uncharacterized conser 95.7 0.26 5.6E-06 47.3 12.8 152 613-769 113-273 (491)
255 PF10300 DUF3808: Protein of u 95.7 0.51 1.1E-05 50.3 16.9 117 616-735 246-374 (468)
256 KOG2280 Vacuolar assembly/sort 95.7 4 8.7E-05 44.2 34.9 342 355-733 443-795 (829)
257 COG1729 Uncharacterized protei 95.6 0.18 3.9E-06 47.5 11.5 88 185-273 153-244 (262)
258 PF00515 TPR_1: Tetratricopept 95.5 0.02 4.2E-07 35.0 3.3 32 744-775 2-33 (34)
259 COG4649 Uncharacterized protei 95.5 1.3 2.7E-05 38.5 14.6 126 648-773 68-197 (221)
260 KOG1585 Protein required for f 95.4 2.1 4.7E-05 39.5 19.6 204 352-582 34-250 (308)
261 smart00299 CLH Clathrin heavy 95.3 1.3 2.8E-05 38.3 15.5 124 608-754 12-136 (140)
262 PF04184 ST7: ST7 protein; In 95.3 1.4 3.1E-05 45.3 17.2 150 214-378 174-324 (539)
263 PF10345 Cohesin_load: Cohesin 95.3 6.2 0.00013 44.1 43.1 183 262-445 39-251 (608)
264 COG2909 MalT ATP-dependent tra 95.2 6.7 0.00014 43.7 26.8 232 533-769 424-685 (894)
265 smart00299 CLH Clathrin heavy 95.2 1.5 3.3E-05 37.8 15.4 124 213-360 12-136 (140)
266 PF12921 ATP13: Mitochondrial 95.1 0.3 6.6E-06 40.8 10.1 51 345-395 48-99 (126)
267 COG3118 Thioredoxin domain-con 95.1 3.4 7.4E-05 39.6 17.9 54 357-411 142-195 (304)
268 KOG2062 26S proteasome regulat 95.1 6.3 0.00014 42.7 38.6 165 612-785 510-689 (929)
269 PF12921 ATP13: Mitochondrial 95.0 0.73 1.6E-05 38.6 12.0 48 669-716 48-96 (126)
270 KOG1920 IkappaB kinase complex 94.9 7.2 0.00016 44.8 22.6 26 352-377 793-820 (1265)
271 KOG2610 Uncharacterized conser 94.9 1.7 3.6E-05 42.1 15.4 120 218-340 113-235 (491)
272 KOG3941 Intermediate in Toll s 94.9 0.25 5.4E-06 46.2 9.8 104 207-330 66-174 (406)
273 PF04053 Coatomer_WDAD: Coatom 94.9 0.7 1.5E-05 48.5 14.4 26 349-374 347-372 (443)
274 PF04053 Coatomer_WDAD: Coatom 94.9 0.97 2.1E-05 47.4 15.4 153 500-697 272-426 (443)
275 KOG4648 Uncharacterized conser 94.8 0.11 2.3E-06 49.9 7.3 93 682-777 106-199 (536)
276 COG4649 Uncharacterized protei 94.7 2.6 5.7E-05 36.7 15.6 123 220-343 70-196 (221)
277 PF13176 TPR_7: Tetratricopept 94.5 0.027 5.9E-07 34.9 1.9 25 746-770 2-26 (36)
278 COG4785 NlpI Lipoprotein NlpI, 94.3 4 8.6E-05 37.0 17.0 29 350-378 238-266 (297)
279 KOG1586 Protein required for f 94.3 4.3 9.3E-05 37.4 21.3 23 683-705 164-186 (288)
280 PF08631 SPO22: Meiosis protei 94.1 6.5 0.00014 38.7 26.6 19 463-481 255-273 (278)
281 COG4785 NlpI Lipoprotein NlpI, 94.0 4.6 9.9E-05 36.7 15.6 30 385-414 238-267 (297)
282 PF13428 TPR_14: Tetratricopep 93.8 0.26 5.6E-06 32.2 5.7 39 710-750 3-42 (44)
283 PF13181 TPR_8: Tetratricopept 93.8 0.089 1.9E-06 32.0 3.2 32 744-775 2-33 (34)
284 PF09613 HrpB1_HrpK: Bacterial 93.6 3.5 7.7E-05 35.7 13.4 110 647-764 19-130 (160)
285 KOG3941 Intermediate in Toll s 93.6 0.67 1.5E-05 43.5 9.6 33 398-430 86-118 (406)
286 PF10602 RPN7: 26S proteasome 93.5 1.2 2.6E-05 40.1 11.3 98 674-773 37-143 (177)
287 KOG1923 Rac1 GTPase effector F 93.5 0.13 2.9E-06 54.8 5.7 12 12-23 280-291 (830)
288 PF13431 TPR_17: Tetratricopep 93.5 0.08 1.7E-06 32.2 2.6 31 731-763 2-33 (34)
289 COG0457 NrfG FOG: TPR repeat [ 93.3 7.5 0.00016 36.9 30.5 201 351-553 61-265 (291)
290 PF10345 Cohesin_load: Cohesin 93.1 18 0.00039 40.5 43.0 88 465-552 372-481 (608)
291 PF13176 TPR_7: Tetratricopept 92.9 0.23 4.9E-06 30.7 4.1 26 710-735 1-26 (36)
292 PF09205 DUF1955: Domain of un 92.8 4.9 0.00011 33.3 16.4 134 291-449 14-150 (161)
293 KOG3364 Membrane protein invol 92.7 1.7 3.6E-05 36.1 9.5 74 705-779 29-107 (149)
294 COG3629 DnrI DNA-binding trans 92.6 0.9 1.9E-05 43.7 9.4 79 208-288 153-236 (280)
295 PF13174 TPR_6: Tetratricopept 92.6 0.17 3.7E-06 30.3 3.2 30 746-775 3-32 (33)
296 PF02259 FAT: FAT domain; Int 92.6 14 0.0003 38.0 25.8 65 602-666 145-212 (352)
297 COG2976 Uncharacterized protei 92.5 6.9 0.00015 35.1 13.8 93 644-738 95-189 (207)
298 COG3947 Response regulator con 92.3 11 0.00023 36.1 16.4 53 322-375 287-339 (361)
299 PF09613 HrpB1_HrpK: Bacterial 92.1 7.5 0.00016 33.8 13.8 74 180-256 17-90 (160)
300 PF13170 DUF4003: Protein of u 92.0 14 0.0003 36.6 20.8 82 333-416 81-175 (297)
301 TIGR02561 HrpB1_HrpK type III 91.9 4.7 0.0001 34.3 11.5 53 649-703 21-74 (153)
302 PF10602 RPN7: 26S proteasome 91.8 4.9 0.00011 36.2 12.8 61 351-411 38-100 (177)
303 PF00515 TPR_1: Tetratricopept 91.8 0.42 9.1E-06 28.9 4.3 26 676-701 4-29 (34)
304 PF13170 DUF4003: Protein of u 91.8 14 0.00031 36.5 21.1 63 365-427 78-149 (297)
305 PF13431 TPR_17: Tetratricopep 91.8 0.21 4.6E-06 30.3 2.8 31 696-728 2-33 (34)
306 KOG2066 Vacuolar assembly/sort 91.7 24 0.00052 38.9 28.4 104 180-291 363-467 (846)
307 KOG1920 IkappaB kinase complex 91.7 31 0.00068 40.1 27.1 137 391-551 915-1053(1265)
308 KOG2066 Vacuolar assembly/sort 91.6 25 0.00053 38.8 26.9 74 356-435 363-439 (846)
309 COG3629 DnrI DNA-binding trans 91.5 2.4 5.2E-05 40.9 10.9 77 675-752 155-236 (280)
310 PF06552 TOM20_plant: Plant sp 91.5 1.6 3.4E-05 38.5 8.7 109 654-773 7-137 (186)
311 COG2909 MalT ATP-dependent tra 91.5 28 0.00061 39.1 28.7 19 181-199 368-386 (894)
312 KOG4234 TPR repeat-containing 91.1 3.6 7.8E-05 36.8 10.5 88 647-737 104-197 (271)
313 PF09205 DUF1955: Domain of un 90.9 8.4 0.00018 32.0 16.1 63 457-520 89-151 (161)
314 PF07719 TPR_2: Tetratricopept 90.8 0.61 1.3E-05 28.1 4.3 25 712-736 5-29 (34)
315 KOG2471 TPR repeat-containing 90.5 9.3 0.0002 39.3 14.1 110 646-756 248-382 (696)
316 PF06552 TOM20_plant: Plant sp 90.4 2.6 5.6E-05 37.2 9.1 111 619-740 7-139 (186)
317 TIGR03504 FimV_Cterm FimV C-te 90.4 0.42 9E-06 31.0 3.2 24 749-772 5-28 (44)
318 PF07035 Mic1: Colon cancer-as 90.1 13 0.00028 32.9 16.8 22 318-339 93-114 (167)
319 PF07035 Mic1: Colon cancer-as 90.0 13 0.00028 32.9 15.8 100 336-445 16-115 (167)
320 PF02284 COX5A: Cytochrome c o 90.0 5.5 0.00012 31.2 9.4 60 691-751 28-87 (108)
321 cd00923 Cyt_c_Oxidase_Va Cytoc 89.8 2.4 5.3E-05 32.7 7.3 61 690-751 24-84 (103)
322 KOG4642 Chaperone-dependent E3 89.6 3 6.6E-05 38.4 9.1 117 647-767 19-141 (284)
323 PF14853 Fis1_TPR_C: Fis1 C-te 89.4 1 2.2E-05 30.7 4.7 33 747-779 5-37 (53)
324 PRK11619 lytic murein transgly 89.2 42 0.00092 37.6 29.7 137 394-540 43-179 (644)
325 PF11207 DUF2989: Protein of u 89.1 5.3 0.00012 36.2 10.2 79 684-764 118-199 (203)
326 KOG0890 Protein kinase of the 88.7 80 0.0017 40.1 29.1 323 390-737 1389-1731(2382)
327 COG1747 Uncharacterized N-term 88.7 34 0.00073 35.8 25.9 96 278-378 65-160 (711)
328 COG0790 FOG: TPR repeat, SEL1 88.7 27 0.00059 34.7 25.0 160 616-785 90-279 (292)
329 PRK15180 Vi polysaccharide bio 88.7 32 0.00069 35.5 35.1 124 322-449 297-421 (831)
330 PF13374 TPR_10: Tetratricopep 88.6 0.88 1.9E-05 29.0 4.0 29 744-772 3-31 (42)
331 PRK15180 Vi polysaccharide bio 88.6 3.7 8E-05 41.8 9.8 126 610-738 296-421 (831)
332 KOG1464 COP9 signalosome, subu 88.5 22 0.00048 33.5 17.2 95 678-773 150-261 (440)
333 COG1747 Uncharacterized N-term 87.9 38 0.00082 35.4 25.5 176 456-647 68-248 (711)
334 KOG1550 Extracellular protein 87.9 48 0.001 36.6 27.7 45 330-377 228-277 (552)
335 KOG2396 HAT (Half-A-TPR) repea 87.9 38 0.00082 35.4 42.9 92 642-736 464-558 (568)
336 KOG0292 Vesicle coat complex C 87.9 52 0.0011 37.0 23.2 176 327-552 606-781 (1202)
337 smart00028 TPR Tetratricopepti 87.6 0.89 1.9E-05 26.5 3.4 31 745-775 3-33 (34)
338 KOG4570 Uncharacterized conser 87.6 3.6 7.7E-05 39.6 8.5 103 598-702 59-164 (418)
339 PF09986 DUF2225: Uncharacteri 87.5 12 0.00026 34.9 12.1 69 709-777 119-199 (214)
340 PRK09687 putative lyase; Provi 87.4 31 0.00067 33.9 28.3 136 418-569 141-277 (280)
341 KOG0276 Vesicle coat complex C 87.4 5.7 0.00012 41.9 10.5 131 351-514 616-746 (794)
342 COG3947 Response regulator con 87.0 30 0.00065 33.3 15.8 69 676-746 282-356 (361)
343 KOG4570 Uncharacterized conser 86.9 5 0.00011 38.6 9.1 99 135-237 66-164 (418)
344 COG5178 PRP8 U5 snRNP spliceos 86.8 0.53 1.1E-05 52.6 3.2 20 760-779 1132-1151(2365)
345 PF04097 Nic96: Nup93/Nic96; 86.7 59 0.0013 36.4 24.3 43 284-327 116-158 (613)
346 KOG0890 Protein kinase of the 86.7 1E+02 0.0022 39.2 33.4 319 213-553 1388-1731(2382)
347 KOG4648 Uncharacterized conser 86.5 4 8.7E-05 39.7 8.3 94 610-707 104-197 (536)
348 PF00637 Clathrin: Region in C 86.5 0.023 4.9E-07 49.6 -6.1 83 609-698 13-95 (143)
349 PRK09687 putative lyase; Provi 86.1 36 0.00079 33.5 28.6 219 172-413 36-263 (280)
350 KOG0276 Vesicle coat complex C 85.7 11 0.00024 39.9 11.5 132 605-769 616-747 (794)
351 TIGR02561 HrpB1_HrpK type III 85.5 22 0.00049 30.4 12.3 54 184-238 21-74 (153)
352 PF13181 TPR_8: Tetratricopept 85.4 1.5 3.3E-05 26.4 3.5 26 676-701 4-29 (34)
353 KOG0403 Neoplastic transformat 85.4 47 0.001 34.1 18.3 61 423-484 513-573 (645)
354 COG4455 ImpE Protein of avirul 85.3 6.6 0.00014 35.8 8.5 73 676-751 4-80 (273)
355 cd00923 Cyt_c_Oxidase_Va Cytoc 85.2 6.6 0.00014 30.5 7.3 65 723-788 22-86 (103)
356 PF02284 COX5A: Cytochrome c o 84.9 15 0.00032 29.0 9.1 78 710-788 10-89 (108)
357 PF13374 TPR_10: Tetratricopep 84.3 2.6 5.7E-05 26.7 4.5 26 675-700 4-29 (42)
358 TIGR02508 type_III_yscG type I 84.2 12 0.00026 29.3 8.2 79 294-379 20-98 (115)
359 KOG4507 Uncharacterized conser 83.5 2.6 5.5E-05 44.1 6.0 95 684-779 618-712 (886)
360 PF08424 NRDE-2: NRDE-2, neces 83.4 54 0.0012 33.1 16.9 119 619-739 47-185 (321)
361 PF11207 DUF2989: Protein of u 83.3 11 0.00023 34.3 9.1 71 297-368 124-197 (203)
362 KOG1586 Protein required for f 83.0 40 0.00087 31.4 18.5 15 146-160 27-41 (288)
363 KOG4642 Chaperone-dependent E3 82.1 29 0.00063 32.4 11.3 118 612-733 19-142 (284)
364 PRK10941 hypothetical protein; 81.7 15 0.00033 35.6 10.3 76 711-788 184-261 (269)
365 COG4455 ImpE Protein of avirul 81.5 12 0.00026 34.2 8.6 124 640-776 3-138 (273)
366 KOG0376 Serine-threonine phosp 81.5 2 4.4E-05 44.0 4.4 98 648-751 14-113 (476)
367 COG4941 Predicted RNA polymera 81.4 23 0.00051 34.7 11.0 125 654-781 272-403 (415)
368 KOG0687 26S proteasome regulat 81.1 58 0.0013 32.0 14.6 99 673-773 104-211 (393)
369 KOG1550 Extracellular protein 80.1 1E+02 0.0022 34.1 28.6 14 470-483 525-538 (552)
370 KOG1464 COP9 signalosome, subu 79.9 56 0.0012 31.0 20.8 228 530-768 71-328 (440)
371 PF13174 TPR_6: Tetratricopept 79.8 3.1 6.6E-05 24.6 3.3 24 713-736 5-28 (33)
372 PF10579 Rapsyn_N: Rapsyn N-te 79.8 4.8 0.0001 29.9 4.7 47 720-766 18-66 (80)
373 COG5187 RPN7 26S proteasome re 79.8 60 0.0013 31.3 13.9 100 673-772 115-221 (412)
374 PF04910 Tcf25: Transcriptiona 79.1 81 0.0018 32.4 17.4 95 679-775 109-225 (360)
375 KOG4279 Serine/threonine prote 78.6 25 0.00055 38.4 11.2 182 592-778 187-401 (1226)
376 PF07721 TPR_4: Tetratricopept 78.5 2.9 6.3E-05 23.4 2.6 21 747-767 5-25 (26)
377 PF04097 Nic96: Nup93/Nic96; 78.3 1.2E+02 0.0026 34.0 26.4 88 287-379 266-357 (613)
378 KOG2063 Vacuolar assembly/sort 78.3 1.4E+02 0.003 34.6 26.6 61 176-236 310-374 (877)
379 PF08424 NRDE-2: NRDE-2, neces 78.1 81 0.0018 31.8 18.2 119 654-774 47-185 (321)
380 KOG4507 Uncharacterized conser 78.0 8.7 0.00019 40.4 7.6 133 619-754 589-721 (886)
381 COG4976 Predicted methyltransf 77.8 4 8.7E-05 37.4 4.6 58 718-777 5-63 (287)
382 KOG0551 Hsp90 co-chaperone CNS 77.3 22 0.00049 34.8 9.6 89 681-771 89-181 (390)
383 KOG0545 Aryl-hydrocarbon recep 77.2 39 0.00084 31.7 10.6 68 712-780 234-301 (329)
384 KOG2396 HAT (Half-A-TPR) repea 77.1 1E+02 0.0022 32.4 42.0 100 670-772 456-559 (568)
385 KOG4077 Cytochrome c oxidase, 76.8 19 0.00041 29.6 7.5 58 692-750 68-125 (149)
386 TIGR03504 FimV_Cterm FimV C-te 75.9 6.1 0.00013 25.7 3.9 22 320-341 5-26 (44)
387 PF10579 Rapsyn_N: Rapsyn N-te 75.8 7.9 0.00017 28.8 4.8 47 685-731 18-66 (80)
388 PF07163 Pex26: Pex26 protein; 75.0 83 0.0018 30.4 12.6 18 683-700 128-145 (309)
389 PF09986 DUF2225: Uncharacteri 74.7 72 0.0016 29.9 12.2 88 651-738 90-195 (214)
390 PF00637 Clathrin: Region in C 74.6 1.4 3E-05 38.3 0.9 85 644-735 13-97 (143)
391 COG5159 RPN6 26S proteasome re 73.6 89 0.0019 30.1 19.2 49 182-230 12-67 (421)
392 COG0790 FOG: TPR repeat, SEL1 73.5 1E+02 0.0022 30.6 23.7 154 146-309 54-221 (292)
393 COG5187 RPN7 26S proteasome re 73.5 90 0.002 30.1 13.1 68 314-381 115-187 (412)
394 PF07575 Nucleopor_Nup85: Nup8 73.3 1.3E+02 0.0028 33.4 16.0 75 474-550 390-464 (566)
395 PF04190 DUF410: Protein of un 71.8 1E+02 0.0022 30.0 20.7 82 278-378 89-170 (260)
396 PRK13342 recombination factor 71.1 1.4E+02 0.0031 31.4 17.8 65 676-740 230-302 (413)
397 PF08311 Mad3_BUB1_I: Mad3/BUB 70.7 30 0.00066 29.0 8.0 44 726-769 81-125 (126)
398 KOG2581 26S proteasome regulat 70.6 1.3E+02 0.0028 30.7 13.7 95 681-779 177-283 (493)
399 smart00028 TPR Tetratricopepti 70.6 9.4 0.0002 21.7 3.9 24 677-700 5-28 (34)
400 KOG2659 LisH motif-containing 70.0 96 0.0021 29.0 11.6 20 681-700 72-91 (228)
401 PF12862 Apc5: Anaphase-promot 68.8 23 0.00049 27.9 6.6 23 750-772 48-70 (94)
402 PF14853 Fis1_TPR_C: Fis1 C-te 68.6 19 0.00042 24.6 5.1 27 680-708 8-34 (53)
403 PF14669 Asp_Glu_race_2: Putat 68.2 92 0.002 28.1 14.5 56 678-733 137-206 (233)
404 KOG2422 Uncharacterized conser 67.9 1.8E+02 0.0039 31.3 16.8 160 615-774 250-450 (665)
405 PF07163 Pex26: Pex26 protein; 67.5 1.2E+02 0.0027 29.3 13.7 87 286-372 90-181 (309)
406 KOG2908 26S proteasome regulat 67.2 64 0.0014 31.9 10.1 77 643-719 80-167 (380)
407 PF09477 Type_III_YscG: Bacter 66.4 67 0.0014 25.8 8.6 81 292-379 19-99 (116)
408 KOG0376 Serine-threonine phosp 66.3 11 0.00025 38.8 5.3 103 610-718 11-115 (476)
409 cd00280 TRFH Telomeric Repeat 65.8 1E+02 0.0022 27.7 11.5 48 330-377 85-139 (200)
410 PF11846 DUF3366: Domain of un 64.2 31 0.00066 31.7 7.5 36 739-774 140-175 (193)
411 PF08311 Mad3_BUB1_I: Mad3/BUB 63.4 34 0.00075 28.7 6.9 44 691-734 81-125 (126)
412 PRK11619 lytic murein transgly 62.9 2.7E+02 0.0057 31.5 41.7 96 610-708 414-511 (644)
413 KOG2391 Vacuolar sorting prote 62.9 1.6E+02 0.0036 29.1 14.0 214 2-269 137-358 (365)
414 PF14689 SPOB_a: Sensor_kinase 62.7 18 0.00039 25.7 4.4 23 712-734 27-49 (62)
415 PF07720 TPR_3: Tetratricopept 62.7 19 0.00042 22.2 3.9 28 747-774 5-34 (36)
416 PF09670 Cas_Cas02710: CRISPR- 62.4 74 0.0016 33.0 10.6 56 611-667 139-198 (379)
417 PF00244 14-3-3: 14-3-3 protei 62.2 1.1E+02 0.0024 29.1 11.0 60 607-666 5-65 (236)
418 KOG4077 Cytochrome c oxidase, 62.1 46 0.001 27.5 6.9 62 726-788 67-128 (149)
419 KOG2063 Vacuolar assembly/sort 62.1 3.1E+02 0.0066 31.9 18.0 27 316-342 506-532 (877)
420 PF13929 mRNA_stabil: mRNA sta 61.1 1.7E+02 0.0037 28.6 17.4 62 416-477 199-261 (292)
421 PHA02875 ankyrin repeat protei 60.9 2.1E+02 0.0045 30.2 14.2 205 185-419 11-230 (413)
422 KOG1308 Hsp70-interacting prot 60.2 12 0.00026 36.7 4.1 88 615-705 126-214 (377)
423 PF14561 TPR_20: Tetratricopep 60.2 67 0.0014 25.0 7.5 54 707-760 21-75 (90)
424 PF14689 SPOB_a: Sensor_kinase 59.2 30 0.00065 24.6 5.0 46 654-701 6-51 (62)
425 PHA02875 ankyrin repeat protei 59.2 2.3E+02 0.0051 29.8 14.3 16 322-337 73-88 (413)
426 PF12862 Apc5: Anaphase-promot 59.1 59 0.0013 25.5 7.3 54 683-736 8-69 (94)
427 cd00280 TRFH Telomeric Repeat 58.0 66 0.0014 28.8 7.7 21 716-736 119-139 (200)
428 KOG0128 RNA-binding protein SA 57.8 3.3E+02 0.0071 30.9 38.7 108 619-727 442-553 (881)
429 PF11838 ERAP1_C: ERAP1-like C 56.1 2.3E+02 0.005 28.6 17.8 254 531-788 45-320 (324)
430 KOG2297 Predicted translation 55.7 2.1E+02 0.0046 28.0 15.7 228 234-482 157-399 (412)
431 PF13929 mRNA_stabil: mRNA sta 55.6 2.1E+02 0.0046 28.0 17.5 116 329-444 143-263 (292)
432 KOG0403 Neoplastic transformat 55.4 2.6E+02 0.0057 29.1 31.2 73 642-719 513-585 (645)
433 PF14561 TPR_20: Tetratricopep 55.3 98 0.0021 24.1 8.3 54 670-723 19-73 (90)
434 KOG2034 Vacuolar sorting prote 53.6 4E+02 0.0087 30.6 26.7 288 458-769 362-687 (911)
435 PRK13341 recombination factor 53.4 4E+02 0.0087 30.6 16.5 77 684-760 269-350 (725)
436 KOG1308 Hsp70-interacting prot 53.4 8.9 0.00019 37.7 2.0 120 648-772 124-244 (377)
437 PF14669 Asp_Glu_race_2: Putat 53.3 1.8E+02 0.0038 26.4 14.8 55 608-662 137-205 (233)
438 PF14929 TAF1_subA: TAF RNA Po 52.9 3.4E+02 0.0075 29.7 23.8 99 135-233 49-158 (547)
439 TIGR02508 type_III_yscG type I 52.4 1.2E+02 0.0025 24.1 9.2 86 148-246 20-105 (115)
440 COG2256 MGS1 ATPase related to 52.2 2.9E+02 0.0063 28.6 14.3 153 602-770 191-351 (436)
441 cd08819 CARD_MDA5_2 Caspase ac 52.1 1.1E+02 0.0023 23.6 7.0 36 501-541 48-83 (88)
442 smart00777 Mad3_BUB1_I Mad3/BU 51.6 1.4E+02 0.0031 24.9 9.6 43 690-732 80-123 (125)
443 KOG3364 Membrane protein invol 51.2 1.5E+02 0.0033 25.1 10.6 69 636-707 30-103 (149)
444 KOG2062 26S proteasome regulat 50.8 4.1E+02 0.0088 29.9 42.3 253 430-701 368-634 (929)
445 PF11817 Foie-gras_1: Foie gra 50.4 74 0.0016 30.6 7.9 58 712-769 182-244 (247)
446 KOG2422 Uncharacterized conser 50.4 3.6E+02 0.0079 29.2 17.7 94 532-631 350-447 (665)
447 PRK10564 maltose regulon perip 49.8 35 0.00077 33.2 5.3 28 712-739 261-288 (303)
448 PF10366 Vps39_1: Vacuolar sor 49.0 77 0.0017 25.7 6.5 27 351-377 41-67 (108)
449 PF09670 Cas_Cas02710: CRISPR- 48.7 3.2E+02 0.007 28.4 12.6 53 324-377 141-197 (379)
450 KOG0545 Aryl-hydrocarbon recep 48.6 2.5E+02 0.0053 26.7 12.1 56 610-666 237-292 (329)
451 PF15297 CKAP2_C: Cytoskeleton 47.8 1.9E+02 0.0042 29.0 9.9 64 689-754 119-186 (353)
452 PF11846 DUF3366: Domain of un 47.6 82 0.0018 28.9 7.5 33 704-736 140-172 (193)
453 PF15297 CKAP2_C: Cytoskeleton 47.5 96 0.0021 31.0 7.9 65 653-719 118-186 (353)
454 KOG3807 Predicted membrane pro 47.3 3E+02 0.0064 27.3 13.1 24 319-342 280-303 (556)
455 PRK10941 hypothetical protein; 47.1 2.9E+02 0.0062 27.0 11.2 59 677-737 185-244 (269)
456 KOG3807 Predicted membrane pro 46.6 3E+02 0.0066 27.2 15.3 56 679-736 281-339 (556)
457 PF04190 DUF410: Protein of un 46.0 2.9E+02 0.0063 26.8 22.0 24 637-660 89-112 (260)
458 PF07575 Nucleopor_Nup85: Nup8 45.6 4.7E+02 0.01 29.1 19.7 25 134-158 149-173 (566)
459 PRK12798 chemotaxis protein; R 45.3 3.8E+02 0.0081 27.9 22.2 239 510-756 98-343 (421)
460 PF11848 DUF3368: Domain of un 45.0 91 0.002 20.7 5.3 28 397-424 15-42 (48)
461 PF11848 DUF3368: Domain of un 44.9 92 0.002 20.7 5.2 32 360-391 13-44 (48)
462 cd08819 CARD_MDA5_2 Caspase ac 43.6 1.5E+02 0.0033 22.9 7.1 67 507-579 20-86 (88)
463 KOG4521 Nuclear pore complex, 43.6 6.5E+02 0.014 30.1 15.9 121 385-512 984-1125(1480)
464 KOG3895 Synaptic vesicle prote 43.5 1.3E+02 0.0029 29.8 8.0 8 1-8 390-397 (488)
465 KOG3824 Huntingtin interacting 43.5 83 0.0018 30.6 6.6 49 685-735 128-177 (472)
466 COG5178 PRP8 U5 snRNP spliceos 43.3 23 0.0005 40.6 3.4 14 6-19 3-16 (2365)
467 KOG0128 RNA-binding protein SA 43.2 5.6E+02 0.012 29.3 40.4 109 654-763 442-554 (881)
468 KOG0687 26S proteasome regulat 42.7 3.6E+02 0.0077 26.9 18.1 135 309-447 65-209 (393)
469 COG5108 RPO41 Mitochondrial DN 42.6 1.6E+02 0.0035 32.1 9.1 91 284-377 33-131 (1117)
470 PF12968 DUF3856: Domain of Un 42.5 2E+02 0.0042 23.8 10.6 64 709-772 56-129 (144)
471 KOG0551 Hsp90 co-chaperone CNS 41.6 2E+02 0.0043 28.7 8.8 95 605-701 83-181 (390)
472 KOG4521 Nuclear pore complex, 41.5 7E+02 0.015 29.9 14.4 156 612-775 929-1135(1480)
473 KOG1839 Uncharacterized protei 41.2 3E+02 0.0064 33.1 11.6 159 612-770 941-1126(1236)
474 PF10475 DUF2450: Protein of u 41.1 3.7E+02 0.0081 26.7 13.6 24 284-307 132-155 (291)
475 PRK14700 recombination factor 41.0 3.7E+02 0.008 26.6 16.9 95 674-768 124-226 (300)
476 PRK10564 maltose regulon perip 41.0 56 0.0012 31.9 5.2 30 317-346 260-289 (303)
477 smart00777 Mad3_BUB1_I Mad3/BU 40.9 2.2E+02 0.0047 23.9 9.4 44 725-768 80-124 (125)
478 COG5159 RPN6 26S proteasome re 40.5 3.6E+02 0.0077 26.3 22.2 98 564-666 130-234 (421)
479 PF11817 Foie-gras_1: Foie gra 40.1 1.8E+02 0.004 27.9 8.8 59 676-734 181-244 (247)
480 smart00386 HAT HAT (Half-A-TPR 39.9 61 0.0013 18.5 3.7 29 757-786 1-29 (33)
481 KOG4279 Serine/threonine prote 39.5 6E+02 0.013 28.6 13.4 200 261-486 180-398 (1226)
482 PF02184 HAT: HAT (Half-A-TPR) 39.4 69 0.0015 19.2 3.4 28 687-716 1-28 (32)
483 PRK13342 recombination factor 39.1 4.9E+02 0.011 27.5 19.6 170 259-447 152-333 (413)
484 KOG2297 Predicted translation 38.5 4E+02 0.0087 26.3 20.2 284 310-631 107-399 (412)
485 PRK13184 pknD serine/threonine 37.9 7.6E+02 0.016 29.3 23.9 274 497-776 483-873 (932)
486 PF04910 Tcf25: Transcriptiona 37.9 4.7E+02 0.01 26.9 22.9 209 318-536 14-271 (360)
487 PF11663 Toxin_YhaV: Toxin wit 37.6 28 0.0006 29.2 2.3 38 216-255 103-140 (140)
488 PF10475 DUF2450: Protein of u 36.8 3.4E+02 0.0074 26.9 10.3 114 285-409 104-222 (291)
489 PF06957 COPI_C: Coatomer (COP 36.4 90 0.0019 32.5 6.2 114 648-780 214-337 (422)
490 PF10255 Paf67: RNA polymerase 36.3 2.6E+02 0.0057 29.1 9.4 134 637-770 38-191 (404)
491 PRK13800 putative oxidoreducta 35.8 8.3E+02 0.018 29.2 30.2 275 438-756 622-897 (897)
492 PF07064 RIC1: RIC1; InterPro 35.5 4.2E+02 0.0092 25.7 17.2 159 606-777 85-254 (258)
493 KOG0292 Vesicle coat complex C 35.5 81 0.0018 35.6 5.9 129 608-769 625-753 (1202)
494 PRK08691 DNA polymerase III su 35.4 7.1E+02 0.015 28.3 13.3 99 688-790 179-291 (709)
495 COG5191 Uncharacterized conser 35.2 1E+02 0.0022 30.2 5.8 77 707-784 106-183 (435)
496 KOG3677 RNA polymerase I-assoc 35.0 5.3E+02 0.012 26.7 11.7 246 93-355 171-425 (525)
497 KOG2471 TPR repeat-containing 34.8 5.9E+02 0.013 27.1 25.5 436 327-787 30-666 (696)
498 PRK14700 recombination factor 34.6 4.7E+02 0.01 25.9 16.3 195 166-377 18-229 (300)
499 PF04762 IKI3: IKI3 family; I 34.5 7.7E+02 0.017 29.4 14.1 212 529-769 699-927 (928)
500 TIGR02710 CRISPR-associated pr 34.4 5.4E+02 0.012 26.6 11.4 130 643-772 135-275 (380)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3.7e-79 Score=699.88 Aligned_cols=602 Identities=19% Similarity=0.270 Sum_probs=358.9
Q ss_pred cHHHHHHHhccCCChHHHHHHHHHHHhccCCCCCccchHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHH
Q 003829 135 DLLGIVKGLGFHKKTDLALDVFEWFRSCCSKDGNLVLRGSVIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSL 214 (793)
Q Consensus 135 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 214 (793)
.+..+++.+...+..+.|..++..+.+. ....+..+++.++..|++.|+++.|.++|+.|.. +|..+|+.+
T Consensus 88 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~----~d~~~~n~l 158 (857)
T PLN03077 88 AYVALFRLCEWKRAVEEGSRVCSRALSS-----HPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPE----RDLFSWNVL 158 (857)
T ss_pred HHHHHHHHHhhCCCHHHHHHHHHHHHHc-----CCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCC----CCeeEHHHH
Confidence 3445555555555555555555555441 1113444555555555555555555555555542 245555555
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC
Q 003829 215 ITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSL 294 (793)
Q Consensus 215 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 294 (793)
|.+|++.|++++|+.+|++|...|+.||..||+.++.+|++.+ ++..+.+++..|.+.|+.||..+|+.++.+|++.|+
T Consensus 159 i~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~ 237 (857)
T PLN03077 159 VGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIP-DLARGREVHAHVVRFGFELDVDVVNALITMYVKCGD 237 (857)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCcc-chhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCC
Confidence 5555555555555555555555555555555555555555555 555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHH
Q 003829 295 HEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQ 374 (793)
Q Consensus 295 ~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 374 (793)
+++|..+|++|.. +|..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.++++.|+.+.|.+++..
T Consensus 238 ~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~ 313 (857)
T PLN03077 238 VVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGY 313 (857)
T ss_pred HHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHH
Confidence 5555555555532 355555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 003829 375 MVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDI 454 (793)
Q Consensus 375 m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 454 (793)
|.+.|+.||..+|+.++.+|++.|++++|.++|++|. .+|..+|+.++.+|++.|++++|+++|++|...|+.||.
T Consensus 314 ~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~ 389 (857)
T PLN03077 314 VVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDE 389 (857)
T ss_pred HHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCc
Confidence 5555555555555555555555555555555555553 235555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003829 455 VTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAAL 534 (793)
Q Consensus 455 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 534 (793)
.+|+.++.+|++.|+.+++.++++.|.+.|+.++..+++.|+.+|++.|++++|.++|++|.+ +|..+|+.++.+|
T Consensus 390 ~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~ 465 (857)
T PLN03077 390 ITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGL 465 (857)
T ss_pred eeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHH
Confidence 555555555555555555555555555555555555555555555555555555555555543 2445555555555
Q ss_pred HhcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003829 535 ARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSERAFLELKKKGFSPDIPTLNAMISIYG 614 (793)
Q Consensus 535 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 614 (793)
++.|+.++|..+|++|.. ++.||..||+.++.+|++.|+.+.+.+++. .+.+.|+.++..++++|+++|+
T Consensus 466 ~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~---------~~~~~g~~~~~~~~naLi~~y~ 535 (857)
T PLN03077 466 RLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHA---------HVLRTGIGFDGFLPNALLDLYV 535 (857)
T ss_pred HHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHH---------HHHHhCCCccceechHHHHHHH
Confidence 555555555555555553 355555555555555555555555555443 3345566666666666666666
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 003829 615 RRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASR 694 (793)
Q Consensus 615 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 694 (793)
+.|++++|.++|+.+ .+|..+|+.++.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|.+.|++++|.+
T Consensus 536 k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~ 610 (857)
T PLN03077 536 RCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLE 610 (857)
T ss_pred HcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHH
Confidence 666666666666665 356666777777777777777777777777666666777777777777777777777777
Q ss_pred HHHHHH-HCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCC
Q 003829 695 IFSEMR-DSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLD 773 (793)
Q Consensus 695 ~~~~~~-~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 773 (793)
+|++|. +.|+.|+..+|+.++.+|++.|++++|.+++++|. ++||..+|+.|+.+|...|+.+.|....+++++++
T Consensus 611 ~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~---~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~ 687 (857)
T PLN03077 611 YFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDPAVWGALLNACRIHRHVELGELAAQHIFELD 687 (857)
T ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC
Confidence 777766 45666666667777777777777777776666663 56666667766666666666666666666666666
Q ss_pred CCC
Q 003829 774 PHV 776 (793)
Q Consensus 774 ~~~ 776 (793)
|++
T Consensus 688 p~~ 690 (857)
T PLN03077 688 PNS 690 (857)
T ss_pred CCC
Confidence 653
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=5e-77 Score=682.31 Aligned_cols=616 Identities=21% Similarity=0.327 Sum_probs=588.2
Q ss_pred ccHHHHHHHhccCCChHHHHHHHHHHHhccCCCCCccchHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHH
Q 003829 134 ADLLGIVKGLGFHKKTDLALDVFEWFRSCCSKDGNLVLRGSVIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTS 213 (793)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 213 (793)
..+..++..+.+.|++++|+.+|+.+... +..++..+|..++.+|.+.+.++.|.+++..+.+.+..++...++.
T Consensus 52 ~~~n~~i~~l~~~g~~~~A~~l~~~m~~~-----g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~ 126 (857)
T PLN03077 52 HDSNSQLRALCSHGQLEQALKLLESMQEL-----RVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNA 126 (857)
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHhc-----CCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHH
Confidence 35677888899999999999999999771 3446778899999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC
Q 003829 214 LITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGS 293 (793)
Q Consensus 214 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 293 (793)
|+..|++.|+++.|..+|++|. .||+++||.++.+|++.| .+++|.++|++|...|+.||..||+.++.+|+..+
T Consensus 127 li~~~~~~g~~~~A~~~f~~m~----~~d~~~~n~li~~~~~~g-~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~ 201 (857)
T PLN03077 127 MLSMFVRFGELVHAWYVFGKMP----ERDLFSWNVLVGGYAKAG-YFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIP 201 (857)
T ss_pred HHHHHHhCCChHHHHHHHhcCC----CCCeeEHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCcc
Confidence 9999999999999999999996 579999999999999999 89999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHH
Q 003829 294 LHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKT 373 (793)
Q Consensus 294 ~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 373 (793)
+.+.+.+++..|.+.|+.||..+|+.|+.+|++.|++++|.++|++| ..+|..+||++|.+|++.|++++|+++|+
T Consensus 202 ~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m----~~~d~~s~n~li~~~~~~g~~~eAl~lf~ 277 (857)
T PLN03077 202 DLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRM----PRRDCISWNAMISGYFENGECLEGLELFF 277 (857)
T ss_pred chhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcC----CCCCcchhHHHHHHHHhCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999 46799999999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 003829 374 QMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPD 453 (793)
Q Consensus 374 ~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 453 (793)
+|.+.|+.||..||+.++.+|++.|+.+.|.+++..|.+.|+.||..+|+.|+.+|++.|++++|.++|++|. .||
T Consensus 278 ~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d 353 (857)
T PLN03077 278 TMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKD 353 (857)
T ss_pred HHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999996 578
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003829 454 IVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAA 533 (793)
Q Consensus 454 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 533 (793)
..+|+.++.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+.+.|+.|+..+|+.++.+
T Consensus 354 ~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~ 433 (857)
T PLN03077 354 AVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEM 433 (857)
T ss_pred eeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003829 534 LARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSERAFLELKKKGFSPDIPTLNAMISIY 613 (793)
Q Consensus 534 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 613 (793)
|++.|++++|.++|++|.+ +|..+|+.++.+|++.|+.++|+.+|+++ .. ++.||..+|+.++.+|
T Consensus 434 y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m---------~~-~~~pd~~t~~~lL~a~ 499 (857)
T PLN03077 434 YSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQM---------LL-TLKPNSVTLIAALSAC 499 (857)
T ss_pred HHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHH---------Hh-CCCCCHhHHHHHHHHH
Confidence 9999999999999999974 68899999999999999999999998765 33 5899999999999999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 003829 614 GRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEAS 693 (793)
Q Consensus 614 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 693 (793)
++.|+++.+.+++..+.+.|+.+|..+++.|+++|+++|++++|.++|+++ .+|..+|+.++.+|++.|+.++|.
T Consensus 500 ~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~ 574 (857)
T PLN03077 500 ARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAV 574 (857)
T ss_pred hhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHH
Confidence 999999999999999999999999999999999999999999999999987 579999999999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhC
Q 003829 694 RIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMI-KQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKL 772 (793)
Q Consensus 694 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 772 (793)
++|++|.+.|+.||..||+.++.+|++.|++++|.++|++|. +.|+.|+..+|+.+++.|++.|++++|.+++++|.
T Consensus 575 ~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~-- 652 (857)
T PLN03077 575 ELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP-- 652 (857)
T ss_pred HHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC--
Confidence 999999999999999999999999999999999999999999 68999999999999999999999999999999984
Q ss_pred CCCCCHHHHHHHHHHHh
Q 003829 773 DPHVTKELECKLSDRIA 789 (793)
Q Consensus 773 ~~~~~~~~~~~l~~~l~ 789 (793)
..|+..+|..|+....
T Consensus 653 -~~pd~~~~~aLl~ac~ 668 (857)
T PLN03077 653 -ITPDPAVWGALLNACR 668 (857)
T ss_pred -CCCCHHHHHHHHHHHH
Confidence 4567888999988764
No 3
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=5.9e-69 Score=600.01 Aligned_cols=523 Identities=20% Similarity=0.320 Sum_probs=439.4
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 003829 205 DIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGC-KPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFN 283 (793)
Q Consensus 205 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~~~~p~~~~~~ 283 (793)
..+...|..++..+++.|++++|+++|++|.+.|+ .++..+++.++.+|.+.| ..++|..+++.|.. ||..+|+
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g-~~~eAl~lf~~M~~----pd~~Tyn 441 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQR-AVKEAFRFAKLIRN----PTLSTFN 441 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCC-CHHHHHHHHHHcCC----CCHHHHH
Confidence 34677788888888899999999999999998885 467778888889998888 88999999888864 8999999
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC
Q 003829 284 TLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDG 363 (793)
Q Consensus 284 ~l~~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 363 (793)
.++.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|
T Consensus 442 ~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G 521 (1060)
T PLN03218 442 MLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAG 521 (1060)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCc
Confidence 99999999999999999999999999999999999999999999999999999999999899999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003829 364 LLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRS--AGCKPNICTFNALIKMHGNRGNFVEMMKV 441 (793)
Q Consensus 364 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 441 (793)
++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|++.|++++|.++
T Consensus 522 ~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~el 601 (1060)
T PLN03218 522 QVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEV 601 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999976 57889999999999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCC
Q 003829 442 FDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVT 521 (793)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 521 (793)
|++|.+.++.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.
T Consensus 602 f~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~ 681 (1060)
T PLN03218 602 YQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIK 681 (1060)
T ss_pred HHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCC
Q 003829 522 PDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSERAFLELKKKGFSP 601 (793)
Q Consensus 522 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 601 (793)
|+..+|+.++.+|++.|++++|.++|++|.+.++.||..+|+.||.+|++.|++++|.++++ +|...|+.|
T Consensus 682 pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~---------eM~~~Gi~P 752 (1060)
T PLN03218 682 LGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLS---------EMKRLGLCP 752 (1060)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH---------HHHHcCCCC
Confidence 99999999999999999999999999999888889999999999999999999999998866 456788899
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----c-------------------CCHHHHH
Q 003829 602 DIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSR----S-------------------ENFARAE 658 (793)
Q Consensus 602 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~-------------------g~~~~A~ 658 (793)
|..+|+.++.+|++.|++++|.+++++|.+.|+.||..+|+.++..|.+ + +..++|.
T Consensus 753 d~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al 832 (1060)
T PLN03218 753 NTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWAL 832 (1060)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHH
Confidence 9999999999999999999999999999999999999999998866432 1 1124566
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 003829 659 DVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQG 738 (793)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 738 (793)
.+|++|.+.|+.||..+|+.++.++++.+..+.+..+++.|...+..|+..+|+.++.++++. .++|..++++|.+.|
T Consensus 833 ~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~G 910 (1060)
T PLN03218 833 MVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLG 910 (1060)
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcC
Confidence 666666666666666666666655555556666666665555555555556666666655321 245666666666666
Q ss_pred CCCCH
Q 003829 739 CKPNQ 743 (793)
Q Consensus 739 ~~p~~ 743 (793)
+.|+.
T Consensus 911 i~p~~ 915 (1060)
T PLN03218 911 VVPSV 915 (1060)
T ss_pred CCCCc
Confidence 66553
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=4.7e-68 Score=592.77 Aligned_cols=544 Identities=20% Similarity=0.304 Sum_probs=388.3
Q ss_pred ccHHHHHHHhccCCChHHHHHHHHHHHhccCCCCCccchHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHH
Q 003829 134 ADLLGIVKGLGFHKKTDLALDVFEWFRSCCSKDGNLVLRGSVIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTS 213 (793)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 213 (793)
..+..++..+.+.|+++.|+++|++|... +-...+...+..++..|.+.|.+++|..+|+.|.. |+..+|+.
T Consensus 371 ~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~----gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~ 442 (1060)
T PLN03218 371 PEYIDAYNRLLRDGRIKDCIDLLEDMEKR----GLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNM 442 (1060)
T ss_pred hHHHHHHHHHHHCcCHHHHHHHHHHHHhC----CCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHH
Confidence 34666666666667777777777776551 11223445556666667777777777777766653 56777777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC
Q 003829 214 LITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGS 293 (793)
Q Consensus 214 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 293 (793)
++.+|++.|++++|.++|++|.+.|+.||..+|+.|+.+|++.| +.++|.++|++|.+.|+.||..+|+.+|.+|++.|
T Consensus 443 LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G-~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G 521 (1060)
T PLN03218 443 LMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSG-KVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAG 521 (1060)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCc-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCc
Confidence 77777777777777777777777777777777777777777777 67777777777777777777777777777777777
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH--cCCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 003829 294 LHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKI--NGCLPSIVTYNSLISAYARDGLLEEAMEL 371 (793)
Q Consensus 294 ~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 371 (793)
++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.. .|+.||..+|+++|.+|++.|++++|.++
T Consensus 522 ~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~el 601 (1060)
T PLN03218 522 QVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEV 601 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 7777777777777777777777777777777777777777777777754 45667777777777777777777777777
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 003829 372 KTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCK 451 (793)
Q Consensus 372 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 451 (793)
|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.
T Consensus 602 f~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~ 681 (1060)
T PLN03218 602 YQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIK 681 (1060)
T ss_pred HHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003829 452 PDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVL 531 (793)
Q Consensus 452 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 531 (793)
||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++
T Consensus 682 pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL 761 (1060)
T PLN03218 682 LGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILL 761 (1060)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 77777777777777777777777777777766777777777777777777777777777777777777777777777777
Q ss_pred HHHHhcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCCCHHHHHHHHH
Q 003829 532 AALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSERAFLELKKKGFSPDIPTLNAMIS 611 (793)
Q Consensus 532 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 611 (793)
.+|++.|++++|.+++.+|.+.|+.||..+|+.++..|. +.++++..+.+.+.. | ..+.
T Consensus 762 ~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~--~~y~ka~~l~~~v~~---f----~~g~------------ 820 (1060)
T PLN03218 762 VASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL--RRFEKACALGEPVVS---F----DSGR------------ 820 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHHHHHhhhhhhhhh---h----hccc------------
Confidence 777777777777777777777777777777777665443 234444444332211 0 0000
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 003829 612 IYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKE 691 (793)
Q Consensus 612 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 691 (793)
.....+..++|..+|++|.+.|+.||..+|+.++.++++.+..+.+..++++|...+..|+..+|+++++++.+. .++
T Consensus 821 ~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~ 898 (1060)
T PLN03218 821 PQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPR 898 (1060)
T ss_pred cccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHH
Confidence 011123356799999999999999999999999998889999999999999999888889999999999998432 468
Q ss_pred HHHHHHHHHHCCCCCCHH
Q 003829 692 ASRIFSEMRDSGLVPDVI 709 (793)
Q Consensus 692 A~~~~~~~~~~~~~p~~~ 709 (793)
|..+|++|.+.|+.|+..
T Consensus 899 A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 899 AFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred HHHHHHHHHHcCCCCCcc
Confidence 999999999999999874
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=3.2e-62 Score=546.52 Aligned_cols=471 Identities=21% Similarity=0.368 Sum_probs=441.1
Q ss_pred ccHHHHHHHhccCCChHHHHHHHHHHHhccCCCCCccchHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHH
Q 003829 134 ADLLGIVKGLGFHKKTDLALDVFEWFRSCCSKDGNLVLRGSVIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTS 213 (793)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 213 (793)
..+..+|..+.+.|++++|+.+|++|.. .....++..+|+.++.+|.+.++++.|.+++..|.+.|+.||..+|+.
T Consensus 88 ~~~~~~i~~l~~~g~~~~Al~~f~~m~~----~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 88 VSLCSQIEKLVACGRHREALELFEILEA----GCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred eeHHHHHHHHHcCCCHHHHHHHHHHHHh----cCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 3678889999999999999999999976 122346889999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC
Q 003829 214 LITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGS 293 (793)
Q Consensus 214 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 293 (793)
|+.+|++.|++++|.++|++|. .||.++||.++.+|++.| ++++|.++|++|.+.|+.||..+|+.++.+|++.|
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g-~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~ 238 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAG-NYREAFALFREMWEDGSDAEPRTFVVMLRASAGLG 238 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCc-CHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCC
Confidence 9999999999999999999996 479999999999999999 99999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHH
Q 003829 294 LHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKT 373 (793)
Q Consensus 294 ~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 373 (793)
..+.+.+++..+.+.|+.+|..+|++|+.+|+++|++++|.++|++| ..+|.++||.+|.+|++.|++++|+++|+
T Consensus 239 ~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m----~~~~~vt~n~li~~y~~~g~~~eA~~lf~ 314 (697)
T PLN03081 239 SARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGM----PEKTTVAWNSMLAGYALHGYSEEALCLYY 314 (697)
T ss_pred cHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhC----CCCChhHHHHHHHHHHhCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999 45699999999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 003829 374 QMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPD 453 (793)
Q Consensus 374 ~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 453 (793)
+|.+.|+.||..||+.++.+|++.|++++|.+++++|.+.|+.+|..+|++|+.+|++.|++++|.++|++|. .+|
T Consensus 315 ~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d 390 (697)
T PLN03081 315 EMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKN 390 (697)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999996 478
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHH
Q 003829 454 IVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLE-AGVTPDLSTYNAVLA 532 (793)
Q Consensus 454 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~ 532 (793)
..+||.||.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+ .|+.|+..+|+.+++
T Consensus 391 ~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~ 470 (697)
T PLN03081 391 LISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIE 470 (697)
T ss_pred eeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999986 599999999999999
Q ss_pred HHHhcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCC-CHHHHHHHHH
Q 003829 533 ALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSERAFLELKKKGFSP-DIPTLNAMIS 611 (793)
Q Consensus 533 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~ 611 (793)
+|++.|++++|.+++++| +..|+..+|+.|+.+|...|+++.|..+++++. +..| +..+|..+++
T Consensus 471 ~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~-----------~~~p~~~~~y~~L~~ 536 (697)
T PLN03081 471 LLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLY-----------GMGPEKLNNYVVLLN 536 (697)
T ss_pred HHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHh-----------CCCCCCCcchHHHHH
Confidence 999999999999999876 457899999999999999999999988876542 2344 4668888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCC
Q 003829 612 IYGRRQMVAKTNEILHFMNDSGFT 635 (793)
Q Consensus 612 ~~~~~g~~~~A~~~~~~~~~~~~~ 635 (793)
.|++.|++++|.++++.|.+.|+.
T Consensus 537 ~y~~~G~~~~A~~v~~~m~~~g~~ 560 (697)
T PLN03081 537 LYNSSGRQAEAAKVVETLKRKGLS 560 (697)
T ss_pred HHHhCCCHHHHHHHHHHHHHcCCc
Confidence 888888888888888888888764
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.7e-61 Score=539.05 Aligned_cols=475 Identities=20% Similarity=0.323 Sum_probs=397.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003829 207 DVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLI 286 (793)
Q Consensus 207 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 286 (793)
+...|+.+|..|.+.|++++|+.+|+.|...+ ++.||..+|+.++
T Consensus 86 ~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~-----------------------------------~~~~~~~t~~~ll 130 (697)
T PLN03081 86 SGVSLCSQIEKLVACGRHREALELFEILEAGC-----------------------------------PFTLPASTYDALV 130 (697)
T ss_pred CceeHHHHHHHHHcCCCHHHHHHHHHHHHhcC-----------------------------------CCCCCHHHHHHHH
Confidence 55577777777777777777777777776543 1234445555555
Q ss_pred HHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHH
Q 003829 287 SCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLE 366 (793)
Q Consensus 287 ~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 366 (793)
.+|++.++.+.|.+++..|.+.|+.||..+|+.|+.+|++.|++++|.++|++| ..||..+|+.+|.+|++.|+++
T Consensus 131 ~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m----~~~~~~t~n~li~~~~~~g~~~ 206 (697)
T PLN03081 131 EACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEM----PERNLASWGTIIGGLVDAGNYR 206 (697)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcC----CCCCeeeHHHHHHHHHHCcCHH
Confidence 555555566667777777777777777777888888888888888888888877 3468888888888888888888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003829 367 EAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEIN 446 (793)
Q Consensus 367 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 446 (793)
+|+++|++|.+.|+.||..+|+.++.+|++.|+.+.+.+++..+.+.|+.+|..+|+.|+.+|++.|++++|.++|++|.
T Consensus 207 ~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~ 286 (697)
T PLN03081 207 EAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP 286 (697)
T ss_pred HHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888886
Q ss_pred hCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHH
Q 003829 447 KCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLST 526 (793)
Q Consensus 447 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 526 (793)
.+|..+|+.++.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+
T Consensus 287 ----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~ 362 (697)
T PLN03081 287 ----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVA 362 (697)
T ss_pred ----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeee
Confidence 4578888888888888888888999999998888889999999999999999999999999999999998899999
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCCCHHHH
Q 003829 527 YNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSERAFLELKKKGFSPDIPTL 606 (793)
Q Consensus 527 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 606 (793)
|+.++++|++.|++++|.++|++|. .||..+|+.+|.+|++.|+.++|.++|+ +|...|+.||..+|
T Consensus 363 ~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~---------~M~~~g~~Pd~~T~ 429 (697)
T PLN03081 363 NTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFE---------RMIAEGVAPNHVTF 429 (697)
T ss_pred hHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHH---------HHHHhCCCCCHHHH
Confidence 9999999999999999999998886 4688899999999999999999998866 45678899999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 003829 607 NAMISIYGRRQMVAKTNEILHFMND-SGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCR 685 (793)
Q Consensus 607 ~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 685 (793)
+.++.+|++.|.+++|.++|+.|.+ .|+.|+..+|+.++++|++.|++++|.++++++ ++.|+..+|++++.+|..
T Consensus 430 ~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~ 506 (697)
T PLN03081 430 LAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRI 506 (697)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999976 588999999999999999999999999998765 468899999999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 003829 686 NGRMKEASRIFSEMRDSGLVPD-VITYNTFVASYAADSLFVEALDVVRYMIKQGCKPN 742 (793)
Q Consensus 686 ~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 742 (793)
.|+++.|..+++++.+ +.|+ ..+|..++..|++.|++++|.+++++|.+.|+.+.
T Consensus 507 ~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~ 562 (697)
T PLN03081 507 HKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMH 562 (697)
T ss_pred cCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccC
Confidence 9999999999999876 5564 57899999999999999999999999999887643
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=3.6e-37 Score=364.17 Aligned_cols=641 Identities=13% Similarity=0.062 Sum_probs=503.7
Q ss_pred chhhhHHHHHHhhhcCCCCCCccccccHHHHHHHhccCCChHHHHHHHHHHHhccCCCCCccchHHHHHHHHHHHHhcCC
Q 003829 109 DVKDIDSVLSQLLDQNPGEKSEDLGADLLGIVKGLGFHKKTDLALDVFEWFRSCCSKDGNLVLRGSVIAVLISMLGKEGK 188 (793)
Q Consensus 109 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 188 (793)
+...+...+..++...|... .............|+++.|+..|+.+.+ .++ ....++..+..++...|+
T Consensus 242 ~~~~A~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~A~~~~~~~l~---~~~---~~~~~~~~~~~~~~~~g~ 310 (899)
T TIGR02917 242 EFEEAEKHADALLKKAPNSP-----LAHYLKALVDFQKKNYEDARETLQDALK---SAP---EYLPALLLAGASEYQLGN 310 (899)
T ss_pred CHHHHHHHHHHHHHhCCCCc-----hHHHHHHHHHHHhcCHHHHHHHHHHHHH---hCC---CchhHHHHHHHHHHHcCC
Confidence 45566666666666554311 1111222233457889999999988876 222 233455566777888999
Q ss_pred hHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 003829 189 VSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVE 268 (793)
Q Consensus 189 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~ 268 (793)
+++|...++.+.+..+. +...+..++..+.+.|++++|...+..+.+.. +.+...+..+...+.+.| ++++|.++|+
T Consensus 311 ~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g-~~~~A~~~~~ 387 (899)
T TIGR02917 311 LEQAYQYLNQILKYAPN-SHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALG-DFEKAAEYLA 387 (899)
T ss_pred HHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCC-CHHHHHHHHH
Confidence 99999999988876543 67778888889999999999999999988764 346778888889999988 8999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 003829 269 GMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPS 348 (793)
Q Consensus 269 ~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 348 (793)
++.+.... +...+..+...+...|++++|...++.+.+.... .......++..+.+.|++++|..+++++... .+.+
T Consensus 388 ~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~ 464 (899)
T TIGR02917 388 KATELDPE-NAAARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALAAAKKLEKK-QPDN 464 (899)
T ss_pred HHHhcCCC-CHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCC
Confidence 98876533 5667777778888899999999999988876422 3445667788888999999999999988775 4556
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003829 349 IVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKM 428 (793)
Q Consensus 349 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 428 (793)
..++..++..+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.++++.+.+.+ +.+..++..+...
T Consensus 465 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 542 (899)
T TIGR02917 465 ASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGL 542 (899)
T ss_pred cHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHH
Confidence 7788889999999999999999999988763 4456677778888889999999999999988764 3467788888899
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHH
Q 003829 429 HGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQA 508 (793)
Q Consensus 429 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a 508 (793)
+.+.|+.++|...++++...+ +.+...+..++..|...|++++|..+++.+.+.. +.+...+..++..+...|++++|
T Consensus 543 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 620 (899)
T TIGR02917 543 YLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKA 620 (899)
T ss_pred HHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999887664 4456777888888999999999999999988754 34677888889999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhH
Q 003829 509 MSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSE 588 (793)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 588 (793)
...|+.+.+.... +...+..+...+.+.|++++|..+++++.+.. +.+..++..++..+...|++++|..+++.+..
T Consensus 621 ~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~- 697 (899)
T TIGR02917 621 VSSFKKLLALQPD-SALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQK- 697 (899)
T ss_pred HHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-
Confidence 9999998876543 66778888888889999999999999888653 44677888888888999999999998876532
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 003829 589 RAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKG 668 (793)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 668 (793)
. .+.+...+..++..+...|++++|.+.|+.+.+.+ |+..++..++.++.+.|++++|.+.++++.+..
T Consensus 698 --------~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 766 (899)
T TIGR02917 698 --------Q-HPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH 766 (899)
T ss_pred --------h-CcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 2 24566778888888889999999999999988764 444677778888899999999999999988763
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 003829 669 IKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNS 748 (793)
Q Consensus 669 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 748 (793)
+.+...+..++..|...|++++|..+|+++.+... .+..+++.++..+...|+ .+|+.+++++++.. +.+..++..
T Consensus 767 -~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~ 842 (899)
T TIGR02917 767 -PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAP-DNAVVLNNLAWLYLELKD-PRALEYAEKALKLA-PNIPAILDT 842 (899)
T ss_pred -CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHH
Confidence 45677888888899999999999999999988543 256788888999999998 88999999988742 224677788
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHh
Q 003829 749 IVDGYCKLNQRYEAITFVNNLSKLDPHVTKELECKLSDRIA 789 (793)
Q Consensus 749 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~ 789 (793)
++..+...|++++|..+++++++.+|. +...+..+...+.
T Consensus 843 ~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~ 882 (899)
T TIGR02917 843 LGWLLVEKGEADRALPLLRKAVNIAPE-AAAIRYHLALALL 882 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHH
Confidence 888899999999999999999999887 4445555555543
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.8e-36 Score=358.22 Aligned_cols=609 Identities=13% Similarity=0.089 Sum_probs=306.3
Q ss_pred HHHHHHHhccCCChHHHHHHHHHHHhccCCCCCccchHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 003829 136 LLGIVKGLGFHKKTDLALDVFEWFRSCCSKDGNLVLRGSVIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLI 215 (793)
Q Consensus 136 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 215 (793)
+..+...+...|+++.|...++.+.+. .+ .+..++.....++...|++++|...|+.+.+.++. +...+..+.
T Consensus 230 ~~~~~~~~~~~g~~~~A~~~~~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~~~ 302 (899)
T TIGR02917 230 LLALATILIEAGEFEEAEKHADALLKK---AP---NSPLAHYLKALVDFQKKNYEDARETLQDALKSAPE-YLPALLLAG 302 (899)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh---CC---CCchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-chhHHHHHH
Confidence 334444444555555555555555441 11 12223333334444555555555555555544322 223333444
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCH
Q 003829 216 TTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLH 295 (793)
Q Consensus 216 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 295 (793)
.++...|++++|...|+++.+.. +.+...+..+...+.+.| ++++|...++.+...... +...+..+...+.+.|++
T Consensus 303 ~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g-~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~ 379 (899)
T TIGR02917 303 ASEYQLGNLEQAYQYLNQILKYA-PNSHQARRLLASIQLRLG-RVDEAIATLSPALGLDPD-DPAALSLLGEAYLALGDF 379 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCC-CHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCCCH
Confidence 45555555555555555555442 223444455555555555 555555555555544322 344455555555555555
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003829 296 EEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQM 375 (793)
Q Consensus 296 ~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 375 (793)
++|.++|+++.+.. +.+...+..+...+...|++++|.+.++++.+... ........++..+.+.|++++|.++++.+
T Consensus 380 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 457 (899)
T TIGR02917 380 EKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDP-ELGRADLLLILSYLRSGQFDKALAAAKKL 457 (899)
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCC-cchhhHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 55555555555442 12344444555555555555555555555544321 12233444455555555555555555555
Q ss_pred HHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 003829 376 VEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIV 455 (793)
Q Consensus 376 ~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 455 (793)
... .+.+..++..+...+...|++++|.+.|+++.+.. +.+...+..++..+...|++++|.+.++++...+ +.+..
T Consensus 458 ~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~ 534 (899)
T TIGR02917 458 EKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLR 534 (899)
T ss_pred HHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHH
Confidence 543 23344455555555555555555555555555432 2234444555555555555555555555554432 22344
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003829 456 TWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALA 535 (793)
Q Consensus 456 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 535 (793)
++..+...+...|+.++|..+++++.+.+. .+...+..++..+...|++++|.++++.+.+.... +...|..+...+.
T Consensus 535 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~ 612 (899)
T TIGR02917 535 AILALAGLYLRTGNEEEAVAWLEKAAELNP-QEIEPALALAQYYLGKGQLKKALAILNEAADAAPD-SPEAWLMLGRAQL 612 (899)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHH
Confidence 555555555555555555555555554432 23444455555555555555555555555543322 4455555555555
Q ss_pred hcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 003829 536 RGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSERAFLELKKKGFSPDIPTLNAMISIYGR 615 (793)
Q Consensus 536 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 615 (793)
..|++++|...|+++.+.. +.+...+..+..++...|++++|...++++.. ..+.+...+..++..+..
T Consensus 613 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----------~~~~~~~~~~~l~~~~~~ 681 (899)
T TIGR02917 613 AAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALE----------LKPDNTEAQIGLAQLLLA 681 (899)
T ss_pred HcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh----------cCCCCHHHHHHHHHHHHH
Confidence 5555555555555554432 22344455555555555555555555544321 112234455555555555
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 003829 616 RQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRI 695 (793)
Q Consensus 616 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 695 (793)
.|++++|..+++.+.+.+ +.+...+..++..+...|++++|.+.|+++... .|+..++..++.++...|++++|.+.
T Consensus 682 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~ 758 (899)
T TIGR02917 682 AKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKT 758 (899)
T ss_pred cCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHH
Confidence 555555555555555543 344445555555555555555555555555553 23334444555555555555555555
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCC
Q 003829 696 FSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPH 775 (793)
Q Consensus 696 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 775 (793)
++++.+.... +...+..++..|...|++++|.+.|+++++.+ +.+..++..+++.+...|+ ++|+.+++++++..|+
T Consensus 759 ~~~~l~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~ 835 (899)
T TIGR02917 759 LEAWLKTHPN-DAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPN 835 (899)
T ss_pred HHHHHHhCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCC
Confidence 5555553211 34455555555555555555555555555432 2234555555555555555 5555555555555555
Q ss_pred CCH
Q 003829 776 VTK 778 (793)
Q Consensus 776 ~~~ 778 (793)
++.
T Consensus 836 ~~~ 838 (899)
T TIGR02917 836 IPA 838 (899)
T ss_pred CcH
Confidence 443
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=1.8e-28 Score=288.20 Aligned_cols=437 Identities=11% Similarity=0.055 Sum_probs=325.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHH------------
Q 003829 321 LDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITP-DVFTY------------ 387 (793)
Q Consensus 321 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~------------ 387 (793)
...+...|++++|+..|++.++. .+.+...+..+...|.+.|++++|++.|++..+..... +...+
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~-~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~ 354 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRA-NPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLL 354 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHH
Confidence 45567789999999999988875 23367788888999999999999999999988764221 11111
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC
Q 003829 388 TTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQN 467 (793)
Q Consensus 388 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 467 (793)
......+.+.|++++|+..|+++++.. +.+...+..+..++...|++++|++.|+++.+.. +.+...+..+...|. .
T Consensus 355 ~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~ 431 (1157)
T PRK11447 355 IQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-Q 431 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-h
Confidence 122445678899999999999988874 3456777788889999999999999999988764 334556666666664 4
Q ss_pred CChHHHHHHHHHHHHcCCC--------CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 003829 468 GMDSEVSGVFKEMKRAGFI--------PERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGM 539 (793)
Q Consensus 468 ~~~~~a~~~~~~m~~~~~~--------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 539 (793)
++.++|..+++.+...... .....+..+...+...|++++|.+.|+++++..+. +...+..+...|.+.|+
T Consensus 432 ~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~ 510 (1157)
T PRK11447 432 QSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQ 510 (1157)
T ss_pred cCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCC
Confidence 5778888887665332100 01224555677788899999999999999987655 67788888899999999
Q ss_pred hHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 003829 540 WEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSERAFLELKKKGFSPDIPTLNAMISIYGRRQMV 619 (793)
Q Consensus 540 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 619 (793)
+++|...++++.+.. +.+...+..+...+...++.++|+..++.+.....-..+...........+..+...+...|+.
T Consensus 511 ~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~ 589 (1157)
T PRK11447 511 RSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKE 589 (1157)
T ss_pred HHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCH
Confidence 999999999988642 2345555555556678899999998887643210000000000000112244567788899999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003829 620 AKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEM 699 (793)
Q Consensus 620 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 699 (793)
++|..+++. .+.+...+..+...+.+.|++++|+..|+++++.. +.+...+..++..|...|++++|++.++++
T Consensus 590 ~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~l 663 (1157)
T PRK11447 590 AEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKL 663 (1157)
T ss_pred HHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999999882 25677788889999999999999999999999863 446789999999999999999999999998
Q ss_pred HHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC--CC---CHHHHHHHHHHHHccCCHHHHHHHHHHHhh
Q 003829 700 RDSGLVP-DVITYNTFVASYAADSLFVEALDVVRYMIKQGC--KP---NQNTYNSIVDGYCKLNQRYEAITFVNNLSK 771 (793)
Q Consensus 700 ~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 771 (793)
.+ ..| +...+..++.++...|++++|.++++++++..- .| +...+..++..+...|+.++|+..|++++.
T Consensus 664 l~--~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 664 PA--TANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred hc--cCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 87 444 456678889999999999999999999987421 12 234667778899999999999999999985
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=4.7e-26 Score=267.89 Aligned_cols=611 Identities=15% Similarity=0.075 Sum_probs=458.5
Q ss_pred cccccHHHHHHHhccCCChHHHHHHHHHHHhccCCCCCccchHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHH
Q 003829 131 DLGADLLGIVKGLGFHKKTDLALDVFEWFRSCCSKDGNLVLRGSVIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYA 210 (793)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 210 (793)
.....++.-++.....++.+.|.+.+.++.. .+++ ++.++..++.++.+.|+.++|.+.++.+.+..+. +...
T Consensus 26 ~~~~~Ll~q~~~~~~~~~~d~a~~~l~kl~~---~~p~---~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~-~~~~ 98 (1157)
T PRK11447 26 TAQQQLLEQVRLGEATHREDLVRQSLYRLEL---IDPN---NPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPD-SNAY 98 (1157)
T ss_pred CHHHHHHHHHHHHHhhCChHHHHHHHHHHHc---cCCC---CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC-ChHH
Confidence 3445578888888999999999999999988 4444 7889999999999999999999999999988654 4333
Q ss_pred H----------------HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHhC
Q 003829 211 Y----------------TSLITTYASNGRYREAVMVFKKMEEEGCKPTLI-TYNVILNVYGKMGMPWNKIMALVEGMKSA 273 (793)
Q Consensus 211 ~----------------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~ll~~~~~~g~~~~~a~~~~~~~~~~ 273 (793)
. ..+.+.+.+.|++++|+..|+++.+.++ |+.. ............| ++++|++.++++.+.
T Consensus 99 ~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p-~~~~la~~y~~~~~~~~g-~~~~A~~~L~~ll~~ 176 (1157)
T PRK11447 99 RSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGAP-PELDLAVEYWRLVAKLPA-QRPEAINQLQRLNAD 176 (1157)
T ss_pred HHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCC-CChHHHHHHHHHHhhCCc-cHHHHHHHHHHHHHh
Confidence 2 3345578899999999999999997643 3332 2211222223346 899999999999987
Q ss_pred CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHH--------------------HHHHHHHHHHhcCChHHH
Q 003829 274 GVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKV--------------------TYNALLDVYGKCRRPKEA 333 (793)
Q Consensus 274 ~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~~~~~--------------------~~~~li~~~~~~g~~~~A 333 (793)
.+. +...+..+...+...|+.++|+..++++...... +.. .+...+..+-.......|
T Consensus 177 ~P~-~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~-~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A 254 (1157)
T PRK11447 177 YPG-NTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAG-RDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAA 254 (1157)
T ss_pred CCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCc-hHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHH
Confidence 644 5667788888899999999999999999764211 110 111111111122234455
Q ss_pred HHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 003829 334 MQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSA 413 (793)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 413 (793)
...+++.......|... .......+...|++++|+..|++.++.. +.+...+..+...+.+.|++++|+..|++..+.
T Consensus 255 ~~~L~~~~~~~~dp~~~-~~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~ 332 (1157)
T PRK11447 255 RSQLAEQQKQLADPAFR-ARAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALAL 332 (1157)
T ss_pred HHHHHHHHHhccCcchH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 56665554432233322 2244667888999999999999999863 447788899999999999999999999999876
Q ss_pred CCCC-CHHHH------------HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHH
Q 003829 414 GCKP-NICTF------------NALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEM 480 (793)
Q Consensus 414 ~~~~-~~~~~------------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 480 (793)
.... ....+ ......+.+.|++++|++.|+++.... +.+...+..+...+...|++++|++.|+++
T Consensus 333 ~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~a 411 (1157)
T PRK11447 333 DPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQA 411 (1157)
T ss_pred CCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 4322 11111 223456779999999999999998874 345677888899999999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCC--------CCHHHHHHHHHHHHhcCChHHHHHHHHHHhc
Q 003829 481 KRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVT--------PDLSTYNAVLAALARGGMWEQSEKIFAEMKG 552 (793)
Q Consensus 481 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 552 (793)
.+.... +...+..+...+. .++.++|..+++.+...... .....+..+...+...|++++|+..+++..+
T Consensus 412 L~~~p~-~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~ 489 (1157)
T PRK11447 412 LRMDPG-NTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLA 489 (1157)
T ss_pred HHhCCC-CHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 987533 5566667777664 46789999988765432110 0123455667788899999999999999987
Q ss_pred CCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003829 553 GRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDS 632 (793)
Q Consensus 553 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 632 (793)
.. +-+...+..+...|.+.|++++|+..+++++. . .+.+...+..+...+...++.++|...++.+...
T Consensus 490 ~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~---------~-~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~ 558 (1157)
T PRK11447 490 LD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQ---------Q-KPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRA 558 (1157)
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---------c-CCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCch
Confidence 63 33566788889999999999999999887643 1 1334555666666678899999999999887544
Q ss_pred CCCCCHH---------HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 003829 633 GFTPSLT---------TYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSG 703 (793)
Q Consensus 633 ~~~~~~~---------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 703 (793)
...++.. .+..++..+...|+.++|+.+++. .+.+...+..+...+.+.|++++|++.|+++++.
T Consensus 559 ~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~- 632 (1157)
T PRK11447 559 QWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR- 632 (1157)
T ss_pred hcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence 3222221 123456778899999999999872 2556677888999999999999999999999994
Q ss_pred CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCC
Q 003829 704 LVP-DVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVT 777 (793)
Q Consensus 704 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 777 (793)
.| +...+..++.+|...|++++|++.++++.+. .| +..++..++.++...|++++|.++++++++..|+.+
T Consensus 633 -~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~ 705 (1157)
T PRK11447 633 -EPGNADARLGLIEVDIAQGDLAAARAQLAKLPAT--ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQP 705 (1157)
T ss_pred -CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCC
Confidence 44 5688999999999999999999999998864 44 467778899999999999999999999999877654
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.97 E-value=4e-24 Score=238.99 Aligned_cols=583 Identities=12% Similarity=0.034 Sum_probs=422.6
Q ss_pred cCCChHHHHHHHHHHHhccCCCCCccchHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCH
Q 003829 145 FHKKTDLALDVFEWFRSCCSKDGNLVLRGSVIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRY 224 (793)
Q Consensus 145 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 224 (793)
..|+++.|+..|+.+.+ .+|+ +..++..++.++.+.|++++|+..+++.++..+. |...+..+... +++
T Consensus 56 ~~Gd~~~A~~~l~~Al~---~dP~---n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~-n~~~~~~La~i----~~~ 124 (987)
T PRK09782 56 KNNDEATAIREFEYIHQ---QVPD---NIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPG-DARLERSLAAI----PVE 124 (987)
T ss_pred hCCCHHHHHHHHHHHHH---hCCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcc-cHHHHHHHHHh----ccC
Confidence 35899999999999987 4444 6788899999999999999999999999988553 55555554322 889
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHH--------HHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHH-HHHHHcCCCH
Q 003829 225 REAVMVFKKMEEEGCKPTLITYNVILNV--------YGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTL-ISCCRRGSLH 295 (793)
Q Consensus 225 ~~A~~~~~~~~~~~~~p~~~~~~~ll~~--------~~~~g~~~~~a~~~~~~~~~~~~~p~~~~~~~l-~~~~~~~~~~ 295 (793)
++|..+|+++.+..+. +..++..+... |.+ +++|.+.++ .......|+..+.... ...|.+.|++
T Consensus 125 ~kA~~~ye~l~~~~P~-n~~~~~~la~~~~~~~~l~y~q----~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw 198 (987)
T PRK09782 125 VKSVTTVEELLAQQKA-CDAVPTLRCRSEVGQNALRLAQ----LPVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQW 198 (987)
T ss_pred hhHHHHHHHHHHhCCC-ChhHHHHHHHHhhccchhhhhh----HHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCH
Confidence 9999999999987432 44455555444 444 466666666 4444455556655555 8899999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHH
Q 003829 296 EEAAGVFEEMKLAGFSPDKVTYNALLDVYGK-CRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQ 374 (793)
Q Consensus 296 ~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 374 (793)
++|+.++.++.+.+ +.+......|..+|.+ .++ +++..+++.. ...+...+..++..|.+.|+.++|.+++++
T Consensus 199 ~~Ai~lL~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~----lk~d~~l~~ala~~yi~~G~~~~A~~~L~~ 272 (987)
T PRK09782 199 SQADTLYNEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQG----IFTDPQSRITYATALAYRGEKARLQHYLIE 272 (987)
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhchh----cccCHHHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 99999999999986 3355567778788888 477 8888886542 345888999999999999999999999999
Q ss_pred HHHcCCC-CCHHHHH------------------------------HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 003829 375 MVEIGIT-PDVFTYT------------------------------TLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFN 423 (793)
Q Consensus 375 m~~~g~~-~~~~~~~------------------------------~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 423 (793)
+...-.. |+..++. .++..+.+.++++.+.++.. +.|....
T Consensus 273 ~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~-- 344 (987)
T PRK09782 273 NKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLA------TLPANEM-- 344 (987)
T ss_pred CcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhc------CCCcchH--
Confidence 8654211 2222111 12444555566554443311 2333332
Q ss_pred HHHHHHH--hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHc-C-CCCCHHHHHHHHHHH
Q 003829 424 ALIKMHG--NRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRA-G-FIPERDTFNTLISAY 499 (793)
Q Consensus 424 ~l~~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~-~~~~~~~~~~l~~~~ 499 (793)
..+..+. ..+...++.+.++.+.... +-+......+.....+.|+.++|..+|+..... + -..+.....-++..|
T Consensus 345 ~~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 423 (987)
T PRK09782 345 LEERYAVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLL 423 (987)
T ss_pred HHHHHhhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHH
Confidence 1222222 3366667777777766542 335666666666778899999999999988763 1 122334444677777
Q ss_pred hccCC---HHHHHHH----------------------HHHHHHC-CC-CC--CHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 003829 500 SRCGS---FDQAMSI----------------------YKRMLEA-GV-TP--DLSTYNAVLAALARGGMWEQSEKIFAEM 550 (793)
Q Consensus 500 ~~~g~---~~~a~~~----------------------~~~~~~~-~~-~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 550 (793)
.+.+. ..++..+ ++..... +. .+ +...|..+..++.. |+.++|...+.+.
T Consensus 424 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~A 502 (987)
T PRK09782 424 ESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQA 502 (987)
T ss_pred HhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHH
Confidence 76655 2333222 2222111 11 23 56677777777776 8889999988887
Q ss_pred hcCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003829 551 KGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMN 630 (793)
Q Consensus 551 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 630 (793)
... .|+......+...+...|++++|+..++++.. .+|+...+..+...+.+.|+.++|...+++..
T Consensus 503 l~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~-----------~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL 569 (987)
T PRK09782 503 EQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISL-----------HDMSNEDLLAAANTAQAAGNGAARDRWLQQAE 569 (987)
T ss_pred HHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhc-----------cCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 765 46655444455556789999999999876431 24455566777888899999999999999999
Q ss_pred hCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHH
Q 003829 631 DSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP-DVI 709 (793)
Q Consensus 631 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~ 709 (793)
+.+ +.+...+..+.....+.|++++|...+++.++. .|+...|..+..++.+.|++++|...++++++ ..| +..
T Consensus 570 ~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~--l~Pd~~~ 644 (987)
T PRK09782 570 QRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALE--LEPNNSN 644 (987)
T ss_pred hcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHH
Confidence 875 444444444445555679999999999999985 56788999999999999999999999999999 555 457
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHH
Q 003829 710 TYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKEL 780 (793)
Q Consensus 710 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 780 (793)
.++.++.++...|++++|+..++++++. .| +...+..++.++...|++++|+..++++++..|++..+.
T Consensus 645 a~~nLG~aL~~~G~~eeAi~~l~~AL~l--~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~ 714 (987)
T PRK09782 645 YQAALGYALWDSGDIAQSREMLERAHKG--LPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALIT 714 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhh
Confidence 8899999999999999999999999984 55 488899999999999999999999999999999976664
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.96 E-value=8.4e-23 Score=228.48 Aligned_cols=558 Identities=12% Similarity=0.032 Sum_probs=403.4
Q ss_pred HHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCC
Q 003829 180 ISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMP 259 (793)
Q Consensus 180 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~ 259 (793)
...+...|++++|+..|+.+++..+. +..++..|...|...|++++|+..+++..+. .|+...|..++..+ + +
T Consensus 51 a~~~~~~Gd~~~A~~~l~~Al~~dP~-n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~~~~La~i---~-~ 123 (987)
T PRK09782 51 ALKAQKNNDEATAIREFEYIHQQVPD-NIPLTLYLAEAYRHFGHDDRARLLLEDQLKR--HPGDARLERSLAAI---P-V 123 (987)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHHHHh---c-c
Confidence 33444569999999999999998776 6889999999999999999999999999987 44544444444333 5 7
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHH--------HHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHhcCCh
Q 003829 260 WNKIMALVEGMKSAGVKPDSYTFNTLISC--------CRRGSLHEEAAGVFEEMKLAGFSPDKVTYNAL-LDVYGKCRRP 330 (793)
Q Consensus 260 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~--------~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~l-i~~~~~~g~~ 330 (793)
+++|..+++++....+. +..++..+... |.+. ++|.+.++ .......|+..+.... ...|.+.|++
T Consensus 124 ~~kA~~~ye~l~~~~P~-n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw 198 (987)
T PRK09782 124 EVKSVTTVEELLAQQKA-CDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQW 198 (987)
T ss_pred ChhHHHHHHHHHHhCCC-ChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCH
Confidence 88999999999987654 45555555554 5554 55665555 3333334445544444 8999999999
Q ss_pred HHHHHHHHHHHHcCCCCChhHHHHHHHHHHh-cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003829 331 KEAMQVLREMKINGCLPSIVTYNSLISAYAR-DGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEE 409 (793)
Q Consensus 331 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 409 (793)
++|++++.++.+.+. .+......|..+|.. .++ +++..+++. .+.-|......++..|.+.|+.++|.+++++
T Consensus 199 ~~Ai~lL~~L~k~~p-l~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~ 272 (987)
T PRK09782 199 SQADTLYNEARQQNT-LSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIE 272 (987)
T ss_pred HHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 999999999999853 355567778788888 477 888888553 2345788899999999999999999999998
Q ss_pred HHHCCCC-CCHHHH------------------------------HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 003829 410 MRSAGCK-PNICTF------------------------------NALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWN 458 (793)
Q Consensus 410 ~~~~~~~-~~~~~~------------------------------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 458 (793)
+...-.. |+..++ ..++..+.+.++++.+.++.. +.|......
T Consensus 273 ~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~ 346 (987)
T PRK09782 273 NKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLA------TLPANEMLE 346 (987)
T ss_pred CcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhc------CCCcchHHH
Confidence 7643211 222222 122455666677775555422 233333221
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHh
Q 003829 459 TLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEA--GVTPDLSTYNAVLAALAR 536 (793)
Q Consensus 459 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~ 536 (793)
.-..+....+...++.+.++.|.+... -+......+.......|+.++|.++|+..... +-..+......++..|.+
T Consensus 347 ~r~~~~~~~~~~~~~~~~~~~~y~~~~-~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 425 (987)
T PRK09782 347 ERYAVSVATRNKAEALRLARLLYQQEP-ANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLES 425 (987)
T ss_pred HHHhhccccCchhHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHh
Confidence 112222345777788888888877633 26667777777788999999999999999873 123345566677777777
Q ss_pred cCC---hHHHHHH----------------------H---HHHhcCCCCC--CHhhHHHHHHHHHcCCCHHHHHHHHHHHH
Q 003829 537 GGM---WEQSEKI----------------------F---AEMKGGRCKP--NELTYSSLLHAYANGREIDQMLALSEEIY 586 (793)
Q Consensus 537 ~g~---~~~A~~~----------------------~---~~~~~~~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 586 (793)
.+. ..++..+ + ...... .++ +...|..+..++.. ++.++|+..+.+..
T Consensus 426 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~-~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al 503 (987)
T PRK09782 426 HPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGD-MSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAE 503 (987)
T ss_pred CCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhccc-CCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHH
Confidence 655 2233222 2 222211 123 56677777777766 78888998776544
Q ss_pred hHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 003829 587 SERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILA 666 (793)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 666 (793)
. ..|+......+...+...|++++|...|+++... +|+...+..+..++.+.|++++|...++++++
T Consensus 504 ~-----------~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~ 570 (987)
T PRK09782 504 Q-----------RQPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQ 570 (987)
T ss_pred H-----------hCCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 2 2355544555566667899999999999998664 45555667778889999999999999999998
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHH
Q 003829 667 KGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPN-QNT 745 (793)
Q Consensus 667 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~ 745 (793)
.+ +.+...+..+...+...|++++|...++++++ ..|+...+..++.++.+.|++++|+..++++++. .|+ ...
T Consensus 571 l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~a 645 (987)
T PRK09782 571 RG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAALEL--EPNNSNY 645 (987)
T ss_pred cC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHH
Confidence 64 22334444444555667999999999999999 6677889999999999999999999999999984 564 788
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHH
Q 003829 746 YNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKELEC 782 (793)
Q Consensus 746 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 782 (793)
+..++.++...|++++|+..++++++.+|++....++
T Consensus 646 ~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~n 682 (987)
T PRK09782 646 QAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQ 682 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 8999999999999999999999999999987765443
No 13
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.95 E-value=3e-22 Score=208.19 Aligned_cols=574 Identities=14% Similarity=0.111 Sum_probs=319.4
Q ss_pred hHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCCCHHHHHHH
Q 003829 189 VSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEG--CKPTLITYNVILNVYGKMGMPWNKIMAL 266 (793)
Q Consensus 189 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~~a~~~ 266 (793)
++.|.+.|...++..++ ++-.+-.-.......|+|..|+.+|..+..-+ +.||+. -.+...+.+.| ..+.|+..
T Consensus 146 ~~~A~a~F~~Vl~~sp~-Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~r--Igig~Cf~kl~-~~~~a~~a 221 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPD-NILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVR--IGIGHCFWKLG-MSEKALLA 221 (1018)
T ss_pred HHHHHHHHHHHHhhCCc-chHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCcc--chhhhHHHhcc-chhhHHHH
Confidence 35555555555554332 32222222222223455666666666544332 222321 11223334555 55556666
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHH---cCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003829 267 VEGMKSAGVKPDSYTFNTLISCCR---RGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKIN 343 (793)
Q Consensus 267 ~~~~~~~~~~p~~~~~~~l~~~~~---~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 343 (793)
|+...+.++. ++.++..|...-. ....+..+..++...-... .-+....+.|...|.-.|+++.+..+...+...
T Consensus 222 ~~ralqLdp~-~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~ 299 (1018)
T KOG2002|consen 222 FERALQLDPT-CVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKN 299 (1018)
T ss_pred HHHHHhcChh-hHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHh
Confidence 6655554321 2222222221111 1223344444444444332 224455555566666666666666666555443
Q ss_pred CCC--CChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH
Q 003829 344 GCL--PSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICT 421 (793)
Q Consensus 344 ~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 421 (793)
... --..+|-.+.++|-..|++++|...|.+..+..-.--...+.-+...+...|+++.+...|+.+.+.. +.+..+
T Consensus 300 t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~et 378 (1018)
T KOG2002|consen 300 TENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYET 378 (1018)
T ss_pred hhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHH
Confidence 211 01224555566666666666666666555543211112233345555666666666666666655542 234445
Q ss_pred HHHHHHHHHhcC----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHH----HHcCCCCCHHHHH
Q 003829 422 FNALIKMHGNRG----NFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEM----KRAGFIPERDTFN 493 (793)
Q Consensus 422 ~~~l~~~~~~~g----~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m----~~~~~~~~~~~~~ 493 (793)
...|...|...+ ..+.|..++.+..+.. +.|...|-.+...+.+..-+.. +.+|... ...+..+.....+
T Consensus 379 m~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LN 456 (1018)
T KOG2002|consen 379 MKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLN 456 (1018)
T ss_pred HHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHH
Confidence 555555555443 3455555555554432 3345555555554444433333 4444332 2334445566666
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHC---CCCCCH------HHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHh-hHH
Q 003829 494 TLISAYSRCGSFDQAMSIYKRMLEA---GVTPDL------STYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNEL-TYS 563 (793)
Q Consensus 494 ~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~ 563 (793)
.+.......|.++.|...|...... ...++. .+-..+...+-..++.+.|.+.|..+.+. .|... .|.
T Consensus 457 Nvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~yl 534 (1018)
T KOG2002|consen 457 NVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYL 534 (1018)
T ss_pred hHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHH
Confidence 6666666777777777776666544 112222 12223444445556667777777776654 33322 333
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHH
Q 003829 564 SLLHAYANGREIDQMLALSEEIYSERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSG-FTPSLTTYN 642 (793)
Q Consensus 564 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~ 642 (793)
.++......++..+|..+++.++. ....+...+..+++.+.+...+..|.+-|..+.+.- ..+|..+.-
T Consensus 535 Rl~~ma~~k~~~~ea~~~lk~~l~----------~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~Ysli 604 (1018)
T KOG2002|consen 535 RLGCMARDKNNLYEASLLLKDALN----------IDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLI 604 (1018)
T ss_pred HhhHHHHhccCcHHHHHHHHHHHh----------cccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHH
Confidence 333222334556666666554432 123344555555666666666666666555554331 124555555
Q ss_pred HHHHHHHc------------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH
Q 003829 643 TLMYMYSR------------SENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVIT 710 (793)
Q Consensus 643 ~l~~~~~~------------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 710 (793)
.|.+.|.+ .+..++|+++|.++++.. +-|...-|.++-+++..|++.+|..+|.+..+.... +..+
T Consensus 605 aLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~-~~dv 682 (1018)
T KOG2002|consen 605 ALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSD-FEDV 682 (1018)
T ss_pred HhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHhh-CCce
Confidence 55554432 245788999999888863 446777788888889999999999999999986442 4467
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 003829 711 YNTFVASYAADSLFVEALDVVRYMIKQGC-KPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKELECKLS 785 (793)
Q Consensus 711 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 785 (793)
|..++.+|..+|++-.|++.|+...++-. ..+..+...|+.++.+.|++.+|.+++..+....|.++...|+..+
T Consensus 683 ~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~ 758 (1018)
T KOG2002|consen 683 WLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLAL 758 (1018)
T ss_pred eeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHH
Confidence 88999999999999999999999876433 3357888899999999999999999999999999999888777543
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.95 E-value=3.1e-24 Score=211.13 Aligned_cols=429 Identities=16% Similarity=0.174 Sum_probs=223.6
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh
Q 003829 282 FNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYAR 361 (793)
Q Consensus 282 ~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 361 (793)
...+..-..+.|++++|++.-...-..+ +.+....-.+-.++.+..++++....-....+. .+.-..+|..+...+-.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~-~~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRK-NPQGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhc-cchHHHHHHHHHHHHHH
Confidence 4455555667777877777665544432 122233333445566666666655444444333 23345677777777777
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCCHHHHHH
Q 003829 362 DGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICT-FNALIKMHGNRGNFVEMMK 440 (793)
Q Consensus 362 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~ 440 (793)
.|++++|+.+++.+++.. +-....|..+..++...|+.+.|.+.|.+.++. .|+... ...+...+-..|++++|..
T Consensus 129 rg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~ 205 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKA 205 (966)
T ss_pred hchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHH
Confidence 777777777777777753 224566777777777777777777777777664 344332 2334444445677777777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCC
Q 003829 441 VFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGV 520 (793)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 520 (793)
.|.+.+... +--...|..|...+...|+...|+..|++..+..+. -...|..|...|...+.+++|...|.+......
T Consensus 206 cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~-f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrp 283 (966)
T KOG4626|consen 206 CYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPN-FLDAYINLGNVYKEARIFDRAVSCYLRALNLRP 283 (966)
T ss_pred HHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCc-chHHHhhHHHHHHHHhcchHHHHHHHHHHhcCC
Confidence 766665442 112345666666666666666666666666554321 234555555555555555555555555554432
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCC-CHhhHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCC
Q 003829 521 TPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKP-NELTYSSLLHAYANGREIDQMLALSEEIYSERAFLELKKKGF 599 (793)
Q Consensus 521 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 599 (793)
. ....+..+...|..+|.++-|+..+++.++. .| -...|+.|..++...|++.+|.+.|.+.+. +
T Consensus 284 n-~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~-----------l 349 (966)
T KOG4626|consen 284 N-HAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALR-----------L 349 (966)
T ss_pred c-chhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHH-----------h
Confidence 2 3344444444555555555555555555543 22 233455555555545555555544443321 1
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-HHHHH
Q 003829 600 SP-DIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPD-IISYN 677 (793)
Q Consensus 600 ~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~ 677 (793)
.| .....+.|...|...|.+++|..+|....+.. +.-....+.|...|-+.|++++|+..|++.++ +.|+ ...|+
T Consensus 350 ~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~ 426 (966)
T KOG4626|consen 350 CPNHADAMNNLGNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALS 426 (966)
T ss_pred CCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHH
Confidence 22 23344444444444444444444444444431 12223344444444444444444444444444 2333 33444
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003829 678 TVIFAYCRNGRMKEASRIFSEMRDSGLVPDV-ITYNTFVASYAADSLFVEALDVVRYMIK 736 (793)
Q Consensus 678 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 736 (793)
.++..|-..|+.+.|...+.+++. +.|.. ..++.|+..|...|++.+|++.|+++++
T Consensus 427 NmGnt~ke~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk 484 (966)
T KOG4626|consen 427 NMGNTYKEMGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK 484 (966)
T ss_pred hcchHHHHhhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc
Confidence 444444444444444444444444 33322 3444444444444444444444444443
No 15
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.94 E-value=1.9e-23 Score=205.65 Aligned_cols=441 Identities=13% Similarity=0.128 Sum_probs=305.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 003829 317 YNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEK 396 (793)
Q Consensus 317 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 396 (793)
...|.+-..+.|++.+|++....+-.+ .+.+....-.+-..+.+..+.+.....-....+.. +.-..+|..+.+.+-.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~-d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQE-DPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhcc-CCCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHH
Confidence 445666667778888887777655443 22233344444455666666666555444444432 3345677778888888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH-HHHHHHHhCCChHHHHH
Q 003829 397 AGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWN-TLLAVFGQNGMDSEVSG 475 (793)
Q Consensus 397 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~ 475 (793)
.|++++|+..++.+++.. +.....|..+..++...|+.+.|.+.|.+.+.. .|+..... .+...+-..|+.++|..
T Consensus 129 rg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~ 205 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKA 205 (966)
T ss_pred hchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHH
Confidence 888888888888877763 224667777777888888888888888777765 34443333 33344455677788877
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCC
Q 003829 476 VFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRC 555 (793)
Q Consensus 476 ~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 555 (793)
-+.+.++.... -...|..|.-.+...|+...|++.|++.++.++. -...|..|...|...+.+++|...+.+....
T Consensus 206 cYlkAi~~qp~-fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~-f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l-- 281 (966)
T KOG4626|consen 206 CYLKAIETQPC-FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPN-FLDAYINLGNVYKEARIFDRAVSCYLRALNL-- 281 (966)
T ss_pred HHHHHHhhCCc-eeeeehhcchHHhhcchHHHHHHHHHHhhcCCCc-chHHHhhHHHHHHHHhcchHHHHHHHHHHhc--
Confidence 77777765321 3346677777777788888888888887776443 4566777777788888888888877777654
Q ss_pred CC-CHhhHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 003829 556 KP-NELTYSSLLHAYANGREIDQMLALSEEIYSERAFLELKKKGFSPD-IPTLNAMISIYGRRQMVAKTNEILHFMNDSG 633 (793)
Q Consensus 556 ~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 633 (793)
.| ....+..+...|...|.++.|+..|++.++ +.|+ ...|+.|..++-..|++.+|...|.+.+...
T Consensus 282 rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~-----------~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~ 350 (966)
T KOG4626|consen 282 RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALE-----------LQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC 350 (966)
T ss_pred CCcchhhccceEEEEeccccHHHHHHHHHHHHh-----------cCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC
Confidence 34 445666666677778888888888776543 3444 5677888888888888888888888877763
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHH
Q 003829 634 FTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPD-IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDV-ITY 711 (793)
Q Consensus 634 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~ 711 (793)
+.-....+.|...|...|.+++|..+|.....- .|. ...++.|...|-..|++++|...++++++ +.|+. ..|
T Consensus 351 -p~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~ 425 (966)
T KOG4626|consen 351 -PNHADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADAL 425 (966)
T ss_pred -CccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHH
Confidence 445666777888888888888888888877763 444 55677788888888888888888888877 77765 677
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 003829 712 NTFVASYAADSLFVEALDVVRYMIKQGCKPN-QNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKELECKL 784 (793)
Q Consensus 712 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 784 (793)
+.++..|-..|+.+.|++.+.+++. +.|. .+.++.|+..|...|+..+|+.-|++++++.|+-+....+.+
T Consensus 426 ~NmGnt~ke~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNll 497 (966)
T KOG4626|consen 426 SNMGNTYKEMGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLL 497 (966)
T ss_pred HhcchHHHHhhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHH
Confidence 8888888888888888888888776 4565 677777888888888888888888888888887766654443
No 16
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.94 E-value=8.9e-21 Score=197.36 Aligned_cols=602 Identities=11% Similarity=0.039 Sum_probs=427.6
Q ss_pred hHHHHHHHHHHHhccCCCCCccchHHHHHHHHHHHHhcCChHHHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHH
Q 003829 149 TDLALDVFEWFRSCCSKDGNLVLRGSVIAVLISMLGKEGKVSVAASLLHGLHKDG--FDIDVYAYTSLITTYASNGRYRE 226 (793)
Q Consensus 149 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~ 226 (793)
.+.|...|..+.+ ..+.+.-.+..-+.+....|++..|..+|..++... ..+|+ .-.+..++++.|+.+.
T Consensus 146 ~~~A~a~F~~Vl~------~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~--rIgig~Cf~kl~~~~~ 217 (1018)
T KOG2002|consen 146 MDDADAQFHFVLK------QSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADV--RIGIGHCFWKLGMSEK 217 (1018)
T ss_pred HHHHHHHHHHHHh------hCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCc--cchhhhHHHhccchhh
Confidence 5788888888877 222344444444455567788999999999865543 33443 3345677889999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 003829 227 AVMVFKKMEEEGCKPTLITYNVILNVYGKMG--MPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEE 304 (793)
Q Consensus 227 A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g--~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~ 304 (793)
|+..|.+..+.++ .++.++-.|...-.... ..+..+..++...-..+.. |....+.|..-|.-.|+++.+..+...
T Consensus 218 a~~a~~ralqLdp-~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~-nP~~l~~LAn~fyfK~dy~~v~~la~~ 295 (1018)
T KOG2002|consen 218 ALLAFERALQLDP-TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNE-NPVALNHLANHFYFKKDYERVWHLAEH 295 (1018)
T ss_pred HHHHHHHHHhcCh-hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCC-CcHHHHHHHHHHhhcccHHHHHHHHHH
Confidence 9999999988642 23333333322222221 1345666666666554433 677888888888888999999999888
Q ss_pred HHHCCCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 003829 305 MKLAGFS--PDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITP 382 (793)
Q Consensus 305 ~~~~g~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~ 382 (793)
+...... .-...|.-+.++|-..|++++|..+|.+..+....-.+..+.-+...|.+.|+++++...|+...+. .+.
T Consensus 296 ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~-~p~ 374 (1018)
T KOG2002|consen 296 AIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ-LPN 374 (1018)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHh-Ccc
Confidence 8776321 1234577888999999999999999988876532212345567788899999999999999998886 244
Q ss_pred CHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH----HhCCCCCCH
Q 003829 383 DVFTYTTLLSGFEKAG----KDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEI----NKCNCKPDI 454 (793)
Q Consensus 383 ~~~~~~~li~~~~~~g----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~ 454 (793)
+..+...+...|...+ ..+.|..++.+..+.- +.|...|-.+..+|....-+.. +..|... ...+..+..
T Consensus 375 ~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~ 452 (1018)
T KOG2002|consen 375 NYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPP 452 (1018)
T ss_pred hHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCH
Confidence 5566666666666554 5677888888877663 4577888888887766554433 6655543 344555778
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHc---CCC------CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHH
Q 003829 455 VTWNTLLAVFGQNGMDSEVSGVFKEMKRA---GFI------PERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLS 525 (793)
Q Consensus 455 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---~~~------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 525 (793)
...|.+...+...|.+++|...|+..... ... ++..+-..+...+-..++++.|.+.|..+++..+. -+.
T Consensus 453 E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~-YId 531 (1018)
T KOG2002|consen 453 EVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPG-YID 531 (1018)
T ss_pred HHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCch-hHH
Confidence 88899999999999999999999887754 112 22223445666777788999999999999887322 334
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCCCHHH
Q 003829 526 TYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSERAFLELKKKGFSPDIPT 605 (793)
Q Consensus 526 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 605 (793)
.|..+.......+...+|...+++....+ ..++..+..+...+.+..++..|..-|+.+.+ +....+|..+
T Consensus 532 ~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~--------~~~~~~D~Ys 602 (1018)
T KOG2002|consen 532 AYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILK--------KTSTKTDAYS 602 (1018)
T ss_pred HHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHh--------hhccCCchhH
Confidence 45555544455688889999999888653 45666677777778887788778777665543 2223367777
Q ss_pred HHHHHHHHHh------------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH
Q 003829 606 LNAMISIYGR------------RQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDI 673 (793)
Q Consensus 606 ~~~l~~~~~~------------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 673 (793)
..+|++.|.+ .+..++|+.+|.++++.. |-|...-|.+.-+++..|++.+|..+|.++.+.. ..+.
T Consensus 603 liaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~ 680 (1018)
T KOG2002|consen 603 LIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT-SDFE 680 (1018)
T ss_pred HHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHH-hhCC
Confidence 7777776543 345788999999998875 6788888999999999999999999999999873 3356
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH-
Q 003829 674 ISYNTVIFAYCRNGRMKEASRIFSEMRDS-GLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVD- 751 (793)
Q Consensus 674 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~- 751 (793)
.+|..++++|...|+|..|.++|+...+. ...-+..+...|++++.+.|++.+|.+.+..+...........+|..+-
T Consensus 681 dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~ 760 (1018)
T KOG2002|consen 681 DVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVL 760 (1018)
T ss_pred ceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHH
Confidence 78999999999999999999999999874 4444678899999999999999999999999887422212333433221
Q ss_pred -----------------HHHccCCHHHHHHHHHHHhhCCCC
Q 003829 752 -----------------GYCKLNQRYEAITFVNNLSKLDPH 775 (793)
Q Consensus 752 -----------------~~~~~g~~~~A~~~~~~~~~~~~~ 775 (793)
.....+..++|.++|.++.+.++.
T Consensus 761 kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 761 KKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNGDK 801 (1018)
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 122345678888899888888655
No 17
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.91 E-value=9.4e-20 Score=201.57 Aligned_cols=434 Identities=11% Similarity=-0.004 Sum_probs=228.6
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 003829 280 YTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAY 359 (793)
Q Consensus 280 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 359 (793)
..+......+.+.|++++|...|++.++. .|+...|..+..+|.+.|++++|++.++..++.. +.+...|..+..+|
T Consensus 128 ~~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~ 204 (615)
T TIGR00990 128 AKLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAY 204 (615)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence 34556666677778888888888777765 4566677777777777788888888777777642 22455777777777
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003829 360 ARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMM 439 (793)
Q Consensus 360 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 439 (793)
...|++++|+..|......+...+. ....++..+.. ..+........+.. +.+...+..+.. |..........
T Consensus 205 ~~lg~~~eA~~~~~~~~~~~~~~~~-~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~ 277 (615)
T TIGR00990 205 DGLGKYADALLDLTASCIIDGFRNE-QSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRP 277 (615)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCccH-HHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcch
Confidence 7778887777777665544211111 11111111111 12222222222221 111111111111 11111111111
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH---HhccCCHHHHHHHHHHHH
Q 003829 440 KVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISA---YSRCGSFDQAMSIYKRML 516 (793)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~---~~~~g~~~~a~~~~~~~~ 516 (793)
.-+...... .+.. ...+..+... ....+++++|.+.|+.+.
T Consensus 278 ~~~~~~~~~--~~~~----------------------------------~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al 321 (615)
T TIGR00990 278 AGLEDSNEL--DEET----------------------------------GNGQLQLGLKSPESKADESYEEAARAFEKAL 321 (615)
T ss_pred hhhhccccc--cccc----------------------------------ccchHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 111110000 0000 0000000000 012345566666666665
Q ss_pred HCC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCC-CHhhHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHH
Q 003829 517 EAG-VTP-DLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKP-NELTYSSLLHAYANGREIDQMLALSEEIYSERAFLE 593 (793)
Q Consensus 517 ~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 593 (793)
+.+ ..| ....+..+...+...|++++|...+++.++. .| ....|..+...+...|++++|+..+++++.
T Consensus 322 ~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~------ 393 (615)
T TIGR00990 322 DLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALK------ 393 (615)
T ss_pred hcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH------
Confidence 543 111 2334555555556666666666666666543 23 334555555566666666666666655432
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH
Q 003829 594 LKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDI 673 (793)
Q Consensus 594 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 673 (793)
. .+.+..++..++..+...|++++|...|++..+.. +.+...+..+..++.+.|++++|+..+++.++. .+.+.
T Consensus 394 ---~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-~P~~~ 467 (615)
T TIGR00990 394 ---L-NSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN-FPEAP 467 (615)
T ss_pred ---h-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCh
Confidence 0 12345566666666666677777777776666653 445555666666666777777777777776654 23345
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHH
Q 003829 674 ISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDV------ITYNTFVASYAADSLFVEALDVVRYMIKQGCKPN-QNTY 746 (793)
Q Consensus 674 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~ 746 (793)
..|+.++.++...|++++|.+.|+++++.....+. ..++..+..+...|++++|.++++++++. .|+ ...+
T Consensus 468 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l--~p~~~~a~ 545 (615)
T TIGR00990 468 DVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALII--DPECDIAV 545 (615)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCCcHHHH
Confidence 66666667777777777777777776662211011 01111222233356777777777776653 333 4456
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHhhCCCC
Q 003829 747 NSIVDGYCKLNQRYEAITFVNNLSKLDPH 775 (793)
Q Consensus 747 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 775 (793)
..++..+.+.|++++|+.+++++.++.+.
T Consensus 546 ~~la~~~~~~g~~~eAi~~~e~A~~l~~~ 574 (615)
T TIGR00990 546 ATMAQLLLQQGDVDEALKLFERAAELART 574 (615)
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHhcc
Confidence 66777777777777777777777666554
No 18
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.90 E-value=1.3e-18 Score=192.50 Aligned_cols=432 Identities=11% Similarity=0.012 Sum_probs=245.7
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003829 243 LITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLD 322 (793)
Q Consensus 243 ~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 322 (793)
...+......+.+.| ++++|+..|++.++. .|+...|..+..+|.+.|++++|...++...+.. +.+...|..+..
T Consensus 127 a~~~k~~G~~~~~~~-~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~ 202 (615)
T TIGR00990 127 AAKLKEKGNKAYRNK-DFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRAN 202 (615)
T ss_pred HHHHHHHHHHHHHcC-CHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHH
Confidence 446778888999999 999999999999875 5677889999999999999999999999999874 335778899999
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Q 003829 323 VYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDES 402 (793)
Q Consensus 323 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 402 (793)
+|...|++++|+..|......+.. +......++..+.. ..+........+.. +.+...+..+ ..+......+.
T Consensus 203 a~~~lg~~~eA~~~~~~~~~~~~~-~~~~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~-~~~~~~~~~~~ 275 (615)
T TIGR00990 203 AYDGLGKYADALLDLTASCIIDGF-RNEQSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFV-GNYLQSFRPKP 275 (615)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-ccHHHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHH-HHHHHHccCCc
Confidence 999999999999999877554222 22222222222222 22333333333332 2221222222 22222222222
Q ss_pred HHHHHHHHHHCCCCCCH-HHHHHHHHH---HHhcCCHHHHHHHHHHHHhCC-C-CCCHHHHHHHHHHHHhCCChHHHHHH
Q 003829 403 AMKVFEEMRSAGCKPNI-CTFNALIKM---HGNRGNFVEMMKVFDEINKCN-C-KPDIVTWNTLLAVFGQNGMDSEVSGV 476 (793)
Q Consensus 403 a~~~~~~~~~~~~~~~~-~~~~~l~~~---~~~~g~~~~A~~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~a~~~ 476 (793)
...-+.+..+. .++. ..+..+... ....+++++|.+.|++....+ . +.....|+.+..
T Consensus 276 ~~~~~~~~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~-------------- 339 (615)
T TIGR00990 276 RPAGLEDSNEL--DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGT-------------- 339 (615)
T ss_pred chhhhhccccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHH--------------
Confidence 22112211111 1110 001111111 012345566666666555432 1 112233444444
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCC
Q 003829 477 FKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCK 556 (793)
Q Consensus 477 ~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 556 (793)
.+...|++++|...+++.++.... ....|..+...+...|++++|...|+++.+.. +
T Consensus 340 ---------------------~~~~~g~~~eA~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p 396 (615)
T TIGR00990 340 ---------------------FKCLKGKHLEALADLSKSIELDPR-VTQSYIKRASMNLELGDPDKAEEDFDKALKLN-S 396 (615)
T ss_pred ---------------------HHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-C
Confidence 444445555555555554443221 23344444444555555555555555554431 2
Q ss_pred CCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 003829 557 PNELTYSSLLHAYANGREIDQMLALSEEIYSERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTP 636 (793)
Q Consensus 557 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 636 (793)
.+...+..+...+...|++++|+..+++.+. . .+.+...+..+...+.+.|++++|+..|++..+.. +.
T Consensus 397 ~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~---------l-~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~ 465 (615)
T TIGR00990 397 EDPDIYYHRAQLHFIKGEFAQAGKDYQKSID---------L-DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PE 465 (615)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---------c-CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CC
Confidence 2344455555555555555555555554332 0 12234455556666677777777777777776653 45
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHH------HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HH
Q 003829 637 SLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDII------SYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPD-VI 709 (793)
Q Consensus 637 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~ 709 (793)
+...++.+..++...|++++|+..|++.+......+.. .++..+..+...|++++|.++++++++ +.|+ ..
T Consensus 466 ~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~--l~p~~~~ 543 (615)
T TIGR00990 466 APDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALI--IDPECDI 543 (615)
T ss_pred ChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCCcHH
Confidence 56777777777778888888888888877642111110 111222233346888888888888877 3443 35
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003829 710 TYNTFVASYAADSLFVEALDVVRYMIKQ 737 (793)
Q Consensus 710 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 737 (793)
.+..++.++...|++++|+++|+++.+.
T Consensus 544 a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 544 AVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 6778888888888888888888888763
No 19
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.89 E-value=1e-19 Score=191.43 Aligned_cols=301 Identities=13% Similarity=0.075 Sum_probs=185.5
Q ss_pred HHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcC
Q 003829 181 SMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPT---LITYNVILNVYGKMG 257 (793)
Q Consensus 181 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~ll~~~~~~g 257 (793)
..+...|++++|...|+++.+.++. +..++..++..+...|++++|..+++.+.+.+..++ ...+..++..|.+.|
T Consensus 43 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 43 LNFLLNEQPDKAIDLFIEMLKVDPE-TVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHHHhcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 3445667777777777777766443 556777777777777777777777777766432111 234666677777777
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCChHHH
Q 003829 258 MPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPD----KVTYNALLDVYGKCRRPKEA 333 (793)
Q Consensus 258 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~~~----~~~~~~li~~~~~~g~~~~A 333 (793)
++++|..+|+++.+... .+..++..++..+.+.|++++|.+.++.+.+.+..+. ...+..++..+.+.|++++|
T Consensus 122 -~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 199 (389)
T PRK11788 122 -LLDRAEELFLQLVDEGD-FAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAA 199 (389)
T ss_pred -CHHHHHHHHHHHHcCCc-chHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence 67777777777765422 2455666677777777777777777777766532221 11344555666667777777
Q ss_pred HHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 003829 334 MQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSA 413 (793)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 413 (793)
...|+++.+.. +.+...+..++..+.+.|++++|.++++++.+.+......++..++.+|...|++++|...++.+.+.
T Consensus 200 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 278 (389)
T PRK11788 200 RALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE 278 (389)
T ss_pred HHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 77777766542 22344566666667777777777777777665432222344556666666667777777766666654
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---CCChHHHHHHHHHHHHcCCCCCH
Q 003829 414 GCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQ---NGMDSEVSGVFKEMKRAGFIPER 489 (793)
Q Consensus 414 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~m~~~~~~~~~ 489 (793)
.|+...+..++..+.+.|++++|..+++++.+. .|+...++.++..+.. .|+.+++..++++|.+.++.+++
T Consensus 279 --~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p 353 (389)
T PRK11788 279 --YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKP 353 (389)
T ss_pred --CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCC
Confidence 234444566666666666666666666666554 4555566655555443 34566666666666655444443
No 20
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.88 E-value=1.8e-19 Score=189.61 Aligned_cols=301 Identities=14% Similarity=0.113 Sum_probs=181.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHH
Q 003829 213 SLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPD---SYTFNTLISCC 289 (793)
Q Consensus 213 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~~~~p~---~~~~~~l~~~~ 289 (793)
..+..+...|++++|+..|.++.+.++ .+..++..+...+...| ++++|..+++.+...+..++ ..++..+...|
T Consensus 40 ~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g-~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~ 117 (389)
T PRK11788 40 FKGLNFLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRG-EVDRAIRIHQNLLSRPDLTREQRLLALQELGQDY 117 (389)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcC-cHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 344556678888999999999888642 35567888888888888 78888888888776532221 23556666777
Q ss_pred HcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh----hHHHHHHHHHHhcCCH
Q 003829 290 RRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSI----VTYNSLISAYARDGLL 365 (793)
Q Consensus 290 ~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~ 365 (793)
.+.|++++|..+|+++.+.. +.+..++..++.++.+.|++++|.+.++.+.+.+..+.. ..+..++..+.+.|++
T Consensus 118 ~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 196 (389)
T PRK11788 118 LKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDL 196 (389)
T ss_pred HHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCH
Confidence 77777777777777777642 335666777777777777777777777777665332211 1344555666667777
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003829 366 EEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEI 445 (793)
Q Consensus 366 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 445 (793)
++|.+.|+++.+.. +.+...+..+...+.+.|++++|.++++++.+.+......+++.++.+|+..|++++|.+.++++
T Consensus 197 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 275 (389)
T PRK11788 197 DAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRA 275 (389)
T ss_pred HHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 77777777766543 22344555566666666666666666666665432222344555666666666666666666665
Q ss_pred HhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc---cCCHHHHHHHHHHHHHCCCC
Q 003829 446 NKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSR---CGSFDQAMSIYKRMLEAGVT 521 (793)
Q Consensus 446 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~ 521 (793)
.+. .|+...+..++..+.+.|++++|..+++++.+. .|+..++..++..++. .|+.+++..+++++.++++.
T Consensus 276 ~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~ 350 (389)
T PRK11788 276 LEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLK 350 (389)
T ss_pred HHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHh
Confidence 544 233334444555555555555555555555443 2444444444444432 23455555555555544433
No 21
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.88 E-value=5.9e-15 Score=147.38 Aligned_cols=582 Identities=10% Similarity=0.044 Sum_probs=263.5
Q ss_pred CChHHHHHHHHHHHhccCCCCCccchHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 003829 147 KKTDLALDVFEWFRSCCSKDGNLVLRGSVIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYRE 226 (793)
Q Consensus 147 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 226 (793)
++...|..++..+++ .+|. ++..|..-.+.=-..|++..|..+...-.+.- +-+..+|.--+ +....+.
T Consensus 265 ~DikKaR~llKSvre---tnP~---hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~c-prSeDvWLeai----RLhp~d~ 333 (913)
T KOG0495|consen 265 EDIKKARLLLKSVRE---TNPK---HPPGWIASARLEEVAGKLSVARNLIMKGCEEC-PRSEDVWLEAI----RLHPPDV 333 (913)
T ss_pred HHHHHHHHHHHHHHh---cCCC---CCchHHHHHHHHHHhhHHHHHHHHHHHHHhhC-CchHHHHHHHH----hcCChHH
Confidence 356688888888887 4444 44456666666667788888877776544432 22444443322 2333444
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 003829 227 AVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPD-SYTFNTLISCCRRGSLHEEAAGVFEEM 305 (793)
Q Consensus 227 A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~ 305 (793)
|..+.....+.. +.++..|--....-. +...=..++++.++. -|+ +..|.. .......+.|+-++.+.
T Consensus 334 aK~vvA~Avr~~-P~Sv~lW~kA~dLE~----~~~~K~RVlRKALe~--iP~sv~LWKa----AVelE~~~darilL~rA 402 (913)
T KOG0495|consen 334 AKTVVANAVRFL-PTSVRLWLKAADLES----DTKNKKRVLRKALEH--IPRSVRLWKA----AVELEEPEDARILLERA 402 (913)
T ss_pred HHHHHHHHHHhC-CCChhhhhhHHhhhh----HHHHHHHHHHHHHHh--CCchHHHHHH----HHhccChHHHHHHHHHH
Confidence 544444444431 222323322221111 112222333333332 122 112221 12223333344444444
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHH----HHcCCC
Q 003829 306 KLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQM----VEIGIT 381 (793)
Q Consensus 306 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~g~~ 381 (793)
.+. ++.....| -+|.+..-|+.|.+++++..+. ++.+...|.+-...--.+|+.+...+++.+- ...|+.
T Consensus 403 vec-cp~s~dLw----lAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~ 476 (913)
T KOG0495|consen 403 VEC-CPQSMDLW----LALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVE 476 (913)
T ss_pred HHh-ccchHHHH----HHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhccee
Confidence 443 12122222 2233334445555555554443 4444445544444444455555444444332 233444
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 003829 382 PDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPN--ICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNT 459 (793)
Q Consensus 382 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 459 (793)
.+...|..=...|-..|.+-.+..+....+.-|+... ..+|+.-.+.|.+.+.++-|..+|...++.. +-+...|..
T Consensus 477 i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf-p~k~slWlr 555 (913)
T KOG0495|consen 477 INRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF-PCKKSLWLR 555 (913)
T ss_pred ecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHHHH
Confidence 4444444444445555555555555554444443311 2344444455555555555555555444331 223344444
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 003829 460 LLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGM 539 (793)
Q Consensus 460 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 539 (793)
....--..|..++...+|.+....-. -....+......+-..|+...|..++..+.+.... +...|..-+.......+
T Consensus 556 a~~~ek~hgt~Esl~Allqkav~~~p-kae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e 633 (913)
T KOG0495|consen 556 AAMFEKSHGTRESLEALLQKAVEQCP-KAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDE 633 (913)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhcccc
Confidence 44444444555555555555544321 13333344444444445555555555555544333 44444444444455555
Q ss_pred hHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 003829 540 WEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSERAFLELKKKGFSPDIPTLNAMISIYGRRQMV 619 (793)
Q Consensus 540 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 619 (793)
++.|..+|.+.... .|+...|..-+..-.-.++.++|++++++.+. .++.-...|..+.+.+-+.+++
T Consensus 634 ~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk----------~fp~f~Kl~lmlGQi~e~~~~i 701 (913)
T KOG0495|consen 634 LERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALK----------SFPDFHKLWLMLGQIEEQMENI 701 (913)
T ss_pred HHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHH----------hCCchHHHHHHHhHHHHHHHHH
Confidence 55555555554432 34444444444433444455555555444322 1111233444444455555555
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003829 620 AKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEM 699 (793)
Q Consensus 620 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 699 (793)
+.|.+.|..-.+. +|..+..|-.|...-.+.|++-+|..++++...++ +-+...|...+..-.+.|+.+.|..++.++
T Consensus 702 e~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakA 779 (913)
T KOG0495|consen 702 EMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKA 779 (913)
T ss_pred HHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5555554444433 23344444444444444455555555555554442 223444555555555555555555555444
Q ss_pred HHCC-----------------------------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHH
Q 003829 700 RDSG-----------------------------LVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPN-QNTYNSI 749 (793)
Q Consensus 700 ~~~~-----------------------------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l 749 (793)
++.- ..-|+.+....+..+....++++|.+.|++.++. .|| -.+|..+
T Consensus 780 LQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~--d~d~GD~wa~f 857 (913)
T KOG0495|consen 780 LQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKK--DPDNGDAWAWF 857 (913)
T ss_pred HHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcc--CCccchHHHHH
Confidence 4410 1123444444444444555555555555555542 222 3444444
Q ss_pred HHHHHccCCHHHHHHHHHHHhhCCCC
Q 003829 750 VDGYCKLNQRYEAITFVNNLSKLDPH 775 (793)
Q Consensus 750 ~~~~~~~g~~~~A~~~~~~~~~~~~~ 775 (793)
...+.+.|.-+.-.+++++.....|.
T Consensus 858 ykfel~hG~eed~kev~~~c~~~EP~ 883 (913)
T KOG0495|consen 858 YKFELRHGTEEDQKEVLKKCETAEPT 883 (913)
T ss_pred HHHHHHhCCHHHHHHHHHHHhccCCC
Confidence 44455555555555555555555444
No 22
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.87 E-value=1.1e-14 Score=145.59 Aligned_cols=583 Identities=11% Similarity=0.044 Sum_probs=413.8
Q ss_pred hHHHHHHhhhcCCCCCCccccccHHHHHHHhccCCChHHHHHHHHHHHhccCCCCCccchHHHHHHHHHHHHhcCChHHH
Q 003829 113 IDSVLSQLLDQNPGEKSEDLGADLLGIVKGLGFHKKTDLALDVFEWFRSCCSKDGNLVLRGSVIAVLISMLGKEGKVSVA 192 (793)
Q Consensus 113 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 192 (793)
+.-+|..+....|.- +..+....+--...|++..|..+...--+ ..+ .+..+|.-.+ +....+.|
T Consensus 270 aR~llKSvretnP~h-----p~gWIAsArLEEvagKl~~Ar~~I~~GCe---~cp---rSeDvWLeai----RLhp~d~a 334 (913)
T KOG0495|consen 270 ARLLLKSVRETNPKH-----PPGWIASARLEEVAGKLSVARNLIMKGCE---ECP---RSEDVWLEAI----RLHPPDVA 334 (913)
T ss_pred HHHHHHHHHhcCCCC-----CchHHHHHHHHHHhhHHHHHHHHHHHHHh---hCC---chHHHHHHHH----hcCChHHH
Confidence 444555555554431 12233333333345677777665544222 112 2444554333 45666778
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 003829 193 ASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKS 272 (793)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~ 272 (793)
..+.-..++.-+ .++..|...+..- .+...=.+++++.++. ++.++..|...+.. . +.+.|..++.+..+
T Consensus 335 K~vvA~Avr~~P-~Sv~lW~kA~dLE---~~~~~K~RVlRKALe~-iP~sv~LWKaAVel----E-~~~darilL~rAve 404 (913)
T KOG0495|consen 335 KTVVANAVRFLP-TSVRLWLKAADLE---SDTKNKKRVLRKALEH-IPRSVRLWKAAVEL----E-EPEDARILLERAVE 404 (913)
T ss_pred HHHHHHHHHhCC-CChhhhhhHHhhh---hHHHHHHHHHHHHHHh-CCchHHHHHHHHhc----c-ChHHHHHHHHHHHH
Confidence 888887777643 3666664444332 2234456788888876 34466677765543 3 45668888888877
Q ss_pred CCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH----HHcCCCCC
Q 003829 273 AGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREM----KINGCLPS 348 (793)
Q Consensus 273 ~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~~~~~~ 348 (793)
.=+. ... |..++.+..-|+.|..+++...+. ++-+...|.+-...--.+|+.+...+++++- ...|+..+
T Consensus 405 ccp~-s~d----LwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~ 478 (913)
T KOG0495|consen 405 CCPQ-SMD----LWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEIN 478 (913)
T ss_pred hccc-hHH----HHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeec
Confidence 5211 222 344566667788899999888775 5667778877777777889999888888764 44578888
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003829 349 IVTYNSLISAYARDGLLEEAMELKTQMVEIGITPD--VFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALI 426 (793)
Q Consensus 349 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 426 (793)
...|..=...+-..|..--+..+....+..|+... ..|+..-...|.+.+.++-|+.+|...++- ++-+...|...+
T Consensus 479 rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~ 557 (913)
T KOG0495|consen 479 RDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAA 557 (913)
T ss_pred HHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHH
Confidence 88888888888888998888888888888886543 357777888899999999999999988875 344677788777
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHH
Q 003829 427 KMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFD 506 (793)
Q Consensus 427 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~ 506 (793)
..--..|..+.-..+|++....- +.....|......+-..|+...|..++....+.+.. +...+..-+........++
T Consensus 558 ~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~e 635 (913)
T KOG0495|consen 558 MFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELE 635 (913)
T ss_pred HHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHH
Confidence 77778888888888998887752 334556666677778889999999999888887544 6778888888888888999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCC-HhhHHHHHHHHHcCCCHHHHHHHHHHH
Q 003829 507 QAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPN-ELTYSSLLHAYANGREIDQMLALSEEI 585 (793)
Q Consensus 507 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~ 585 (793)
.|..+|.+.... .+....|..-+....-.++.++|.+++++.++. -|+ ...|..+.+.+.+.++++.|...|..-
T Consensus 636 raR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G 711 (913)
T KOG0495|consen 636 RARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQG 711 (913)
T ss_pred HHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhc
Confidence 999999888765 456666666666666678889999999888875 343 446777777888888888888776532
Q ss_pred HhHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 003829 586 YSERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREIL 665 (793)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 665 (793)
-+.++..+..|..|...--+.|.+-+|..++++..-.+ |.+...|...|.+-.+.|+.+.|..+..+++
T Consensus 712 ----------~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakAL 780 (913)
T KOG0495|consen 712 ----------TKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKAL 780 (913)
T ss_pred ----------cccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 22334456677777777778888888888888887776 6678888888888888888888888777766
Q ss_pred HC-----------------------------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHH
Q 003829 666 AK-----------------------------GIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDV-ITYNTFV 715 (793)
Q Consensus 666 ~~-----------------------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~ 715 (793)
+. .+.-|..+...+...+....++++|+++|.+.++ ..||. .+|..+.
T Consensus 781 Qecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk--~d~d~GD~wa~fy 858 (913)
T KOG0495|consen 781 QECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVK--KDPDNGDAWAWFY 858 (913)
T ss_pred HhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHc--cCCccchHHHHHH
Confidence 53 1223445556666777788899999999999999 55655 7888888
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHH
Q 003829 716 ASYAADSLFVEALDVVRYMIKQGCKPN-QNTYNS 748 (793)
Q Consensus 716 ~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~ 748 (793)
..+..+|.-++-.+++.+... ..|. -..|..
T Consensus 859 kfel~hG~eed~kev~~~c~~--~EP~hG~~W~a 890 (913)
T KOG0495|consen 859 KFELRHGTEEDQKEVLKKCET--AEPTHGELWQA 890 (913)
T ss_pred HHHHHhCCHHHHHHHHHHHhc--cCCCCCcHHHH
Confidence 899999998888999999876 4564 334433
No 23
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.87 E-value=3.2e-18 Score=188.31 Aligned_cols=357 Identities=8% Similarity=-0.046 Sum_probs=257.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 003829 387 YTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQ 466 (793)
Q Consensus 387 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 466 (793)
...++..+.+.|+.++|..+++..+..... +...+..++......|++++|.+.++++.... +.+...+..+...+..
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~ 122 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLK 122 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHH
Confidence 455677788899999999999998877433 45556666677778999999999999988764 3456778888888899
Q ss_pred CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 003829 467 NGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKI 546 (793)
Q Consensus 467 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 546 (793)
.|++++|...++++.+... .+...+..++..+...|++++|...++.+...... +...+..+ ..+...|++++|...
T Consensus 123 ~g~~~~Ai~~l~~Al~l~P-~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~ 199 (656)
T PRK15174 123 SKQYATVADLAEQAWLAFS-GNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDL 199 (656)
T ss_pred cCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHH
Confidence 9999999999999887643 35667788888888999999999988888766544 33334333 347778999999999
Q ss_pred HHHHhcCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH----H
Q 003829 547 FAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAK----T 622 (793)
Q Consensus 547 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----A 622 (793)
++.+......++...+..+..++...|++++|+..+++++. . .+.+...+..+...+...|++++ |
T Consensus 200 ~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~---------~-~p~~~~~~~~Lg~~l~~~G~~~eA~~~A 269 (656)
T PRK15174 200 ARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALA---------R-GLDGAALRRSLGLAYYQSGRSREAKLQA 269 (656)
T ss_pred HHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHh---------c-CCCCHHHHHHHHHHHHHcCCchhhHHHH
Confidence 88887653233444445556677788888888888776542 1 23456677778888888888875 7
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 003829 623 NEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDS 702 (793)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 702 (793)
...|++..+.. +.+...+..+...+...|++++|+..++++.+.. +.+...+..+..++...|++++|...|+++.+
T Consensus 270 ~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~- 346 (656)
T PRK15174 270 AEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAR- 346 (656)
T ss_pred HHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-
Confidence 88888887764 5567778888888888888888888888888753 33456677778888888888888888888887
Q ss_pred CCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCC
Q 003829 703 GLVPDV-ITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPH 775 (793)
Q Consensus 703 ~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 775 (793)
..|+. ..+..++.++...|++++|+..|+++++. .|+.. ...+++|...+.++++.-+.
T Consensus 347 -~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~--~P~~~-----------~~~~~ea~~~~~~~~~~~~~ 406 (656)
T PRK15174 347 -EKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA--RASHL-----------PQSFEEGLLALDGQISAVNL 406 (656)
T ss_pred -hCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--Chhhc-----------hhhHHHHHHHHHHHHHhcCC
Confidence 34443 33444566778888888888888888763 34321 23344555555555555433
No 24
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.87 E-value=1.2e-17 Score=183.81 Aligned_cols=330 Identities=11% Similarity=0.025 Sum_probs=165.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 003829 179 LISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGM 258 (793)
Q Consensus 179 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~ 258 (793)
++..+.+.|++++|..+++.++...+. +...+..++.+....|++++|+..|+++.+..+ .+...+..+...+...|
T Consensus 48 ~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P-~~~~a~~~la~~l~~~g- 124 (656)
T PRK15174 48 FAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVNV-CQPEDVLLVASVLLKSK- 124 (656)
T ss_pred HHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcC-
Confidence 344444555555555555555554333 334444444555555555555555555555431 23445555555555555
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 003829 259 PWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLR 338 (793)
Q Consensus 259 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 338 (793)
++++|+..++++.+.... +...+..+...+...|++++|...++.+...... +...+..+ ..+...|++++|...++
T Consensus 125 ~~~~Ai~~l~~Al~l~P~-~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~ 201 (656)
T PRK15174 125 QYATVADLAEQAWLAFSG-NSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLAR 201 (656)
T ss_pred CHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHH
Confidence 555555555555554221 3444455555555555555555555555443211 12222222 22455555666655555
Q ss_pred HHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHCC
Q 003829 339 EMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDES----AMKVFEEMRSAG 414 (793)
Q Consensus 339 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~----a~~~~~~~~~~~ 414 (793)
.+......++...+..++..+...|++++|++.++++.+.. +.+...+..+...+...|++++ |...++.+.+..
T Consensus 202 ~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~ 280 (656)
T PRK15174 202 ALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN 280 (656)
T ss_pred HHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC
Confidence 55443222223333344455555566666666665555542 2234445555555555555553 555555555442
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 003829 415 CKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNT 494 (793)
Q Consensus 415 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 494 (793)
+.+...+..+...+...|++++|+..+++..... +.+...+..+..++.+.|++++|...|+.+.+.+.. +...+..
T Consensus 281 -P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~-~~~~~~~ 357 (656)
T PRK15174 281 -SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGV-TSKWNRY 357 (656)
T ss_pred -CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-chHHHHH
Confidence 2244555555555556666666666665555442 223344445555555666666666666555554221 1222333
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHC
Q 003829 495 LISAYSRCGSFDQAMSIYKRMLEA 518 (793)
Q Consensus 495 l~~~~~~~g~~~~a~~~~~~~~~~ 518 (793)
+..++...|++++|.+.|+++.+.
T Consensus 358 ~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 358 AAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh
Confidence 344555566666666666665554
No 25
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.86 E-value=2.1e-15 Score=156.84 Aligned_cols=612 Identities=12% Similarity=0.088 Sum_probs=409.1
Q ss_pred hccCCChHHHHHHHHHHHhccCCCCCccchHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC
Q 003829 143 LGFHKKTDLALDVFEWFRSCCSKDGNLVLRGSVIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNG 222 (793)
Q Consensus 143 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 222 (793)
+.-+|+.+.|.+++..+.+ ..+....+|..+..++-..|+.+++...+--+....+. |...|-.+.......|
T Consensus 149 lfarg~~eeA~~i~~EvIk------qdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~-d~e~W~~ladls~~~~ 221 (895)
T KOG2076|consen 149 LFARGDLEEAEEILMEVIK------QDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK-DYELWKRLADLSEQLG 221 (895)
T ss_pred HHHhCCHHHHHHHHHHHHH------hCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHhcc
Confidence 3346999999999999987 23457889999999999999999999888777665554 6789999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHH----HHHHHHcCCCHHHH
Q 003829 223 RYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNT----LISCCRRGSLHEEA 298 (793)
Q Consensus 223 ~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~~~~p~~~~~~~----l~~~~~~~~~~~~A 298 (793)
.+++|.-+|.++++.. +++....---...|.+.| +...|.+-|.++.+.....|-.-+.. +++.+...++.+.|
T Consensus 222 ~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G-~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a 299 (895)
T KOG2076|consen 222 NINQARYCYSRAIQAN-PSNWELIYERSSLYQKTG-DLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERA 299 (895)
T ss_pred cHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhC-hHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 9999999999999985 335555556677889999 89999999999998765333333333 34567778888999
Q ss_pred HHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC---------------------------CChh
Q 003829 299 AGVFEEMKLAG-FSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCL---------------------------PSIV 350 (793)
Q Consensus 299 ~~~~~~~~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---------------------------~~~~ 350 (793)
.+.++.....+ -..+...++.++..|.+...++.|...+..+...... ++..
T Consensus 300 ~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~ 379 (895)
T KOG2076|consen 300 AKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLR 379 (895)
T ss_pred HHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccch
Confidence 99998877632 2345667889999999999999999988887662111 1222
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003829 351 TYNSLISAYARDGLLEEAMELKTQMVEIG--ITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKM 428 (793)
Q Consensus 351 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 428 (793)
. ..++-++......+....+.....+.. ..-+...|..+..+|.+.|++.+|+.+|..+......-+..+|-.+..+
T Consensus 380 v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c 458 (895)
T KOG2076|consen 380 V-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARC 458 (895)
T ss_pred h-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHH
Confidence 2 122334444444444444555555555 3445678999999999999999999999999987666678899999999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH--------cCCCCCHHHHHHHHHHHh
Q 003829 429 HGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKR--------AGFIPERDTFNTLISAYS 500 (793)
Q Consensus 429 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~--------~~~~~~~~~~~~l~~~~~ 500 (793)
|...|..++|.+.|+.++... +.+...--.|...+.+.|+.++|.+.++.+.. .+..|+..........+.
T Consensus 459 ~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~ 537 (895)
T KOG2076|consen 459 YMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILF 537 (895)
T ss_pred HHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHH
Confidence 999999999999999998763 33456666777889999999999999998652 234455555566667788
Q ss_pred ccCCHHHHHHHHHHHHHCC-----CCC-----------------CHHHHHHHHHHHHhcCChHHHHHHHHH------Hhc
Q 003829 501 RCGSFDQAMSIYKRMLEAG-----VTP-----------------DLSTYNAVLAALARGGMWEQSEKIFAE------MKG 552 (793)
Q Consensus 501 ~~g~~~~a~~~~~~~~~~~-----~~~-----------------~~~~~~~l~~~~~~~g~~~~A~~~~~~------~~~ 552 (793)
..|+.++-..+-..|+... +-| .......++.+-.+.++.....+-... ...
T Consensus 538 ~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~ 617 (895)
T KOG2076|consen 538 QVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVEL 617 (895)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhh
Confidence 8888877665555554321 101 111122222333333332211111111 011
Q ss_pred CCCCCCH--hhHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCCHHHHHHHH
Q 003829 553 GRCKPNE--LTYSSLLHAYANGREIDQMLALSEEIYSERAFLELKKKGFSPDIP----TLNAMISIYGRRQMVAKTNEIL 626 (793)
Q Consensus 553 ~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~ 626 (793)
.+...+. ..+..++.++++.+.+++|..+...+.....| ..+.. .-...+.+....+++..|...+
T Consensus 618 ~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f--------~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~l 689 (895)
T KOG2076|consen 618 RGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIF--------FQDSEIRKELQFLGLKASLYARDPGDAFSYL 689 (895)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhh--------hccHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 1111111 13345666778888899988887665442222 11211 2234445667788999999999
Q ss_pred HHHHhC-CC---CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 003829 627 HFMNDS-GF---TPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDS 702 (793)
Q Consensus 627 ~~~~~~-~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 702 (793)
+.|... +. +--...||...+...+.++-.--..++..+.......+.......++....++.+..|+..+-++..
T Consensus 690 R~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~- 768 (895)
T KOG2076|consen 690 RSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFR- 768 (895)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHH-
Confidence 888765 11 1223446655555666655444444444444432222233444445666778899999999888887
Q ss_pred CCCCCH-HHHHHHHHHHHhc----------CChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHh
Q 003829 703 GLVPDV-ITYNTFVASYAAD----------SLFVEALDVVRYMIKQGC-KPNQNTYNSIVDGYCKLNQRYEAITFVNNLS 770 (793)
Q Consensus 703 ~~~p~~-~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 770 (793)
..||. .+-..++.++... -..-+++.++++..+... .-..+++..++.+|-..|-..-|+.+|++++
T Consensus 769 -~~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL 847 (895)
T KOG2076|consen 769 -QNPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVL 847 (895)
T ss_pred -hCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHh
Confidence 55553 2222222222211 123456667766655321 1136778889999999999999999999999
Q ss_pred hCCCC
Q 003829 771 KLDPH 775 (793)
Q Consensus 771 ~~~~~ 775 (793)
+..|.
T Consensus 848 ~~~p~ 852 (895)
T KOG2076|consen 848 EVSPK 852 (895)
T ss_pred CCCcc
Confidence 99654
No 26
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.86 E-value=3.1e-17 Score=184.73 Aligned_cols=417 Identities=12% Similarity=0.096 Sum_probs=267.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003829 313 DKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLS 392 (793)
Q Consensus 313 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 392 (793)
+.....-.+.+....|+.++|++++.+.... .+.+...+..+...+...|++++|.+++++.++.. +.+...+..++.
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~-~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~ 91 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVH-MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLIL 91 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 3444445555566677777777777666542 22334456666667777777777777777766652 334445556666
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHH
Q 003829 393 GFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSE 472 (793)
Q Consensus 393 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 472 (793)
.+...|++++|+..++++.+.. +.+.. +..+..++...|+.++|+..++++.+.. +.+...+..+...+...+..++
T Consensus 92 ~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~ 168 (765)
T PRK10049 92 TLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAP 168 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHH
Confidence 6666777777777777766652 22444 6666666666777777777776666553 2233444445555555666666
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-----HhcCCh---HHHH
Q 003829 473 VSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAAL-----ARGGMW---EQSE 544 (793)
Q Consensus 473 a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~g~~---~~A~ 544 (793)
|++.++.... .|+.. ...+ .......+... ...+++ ++|+
T Consensus 169 Al~~l~~~~~---~p~~~----------------~~l~-------------~~~~~~~~r~~~~~~~~~~~r~~~ad~Al 216 (765)
T PRK10049 169 ALGAIDDANL---TPAEK----------------RDLE-------------ADAAAELVRLSFMPTRSEKERYAIADRAL 216 (765)
T ss_pred HHHHHHhCCC---CHHHH----------------HHHH-------------HHHHHHHHHhhcccccChhHHHHHHHHHH
Confidence 6655544332 11100 0000 00001111111 112223 6777
Q ss_pred HHHHHHhcC-CCCCCHh-hHH----HHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcC
Q 003829 545 KIFAEMKGG-RCKPNEL-TYS----SLLHAYANGREIDQMLALSEEIYSERAFLELKKKGFS-PDIPTLNAMISIYGRRQ 617 (793)
Q Consensus 545 ~~~~~~~~~-~~~p~~~-~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g 617 (793)
..++.+.+. ...|+.. .+. ..+..+...|++++|+..|+.+. ..+.. |+. ....+...|...|
T Consensus 217 ~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll---------~~~~~~P~~-a~~~la~~yl~~g 286 (765)
T PRK10049 217 AQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLK---------AEGQIIPPW-AQRWVASAYLKLH 286 (765)
T ss_pred HHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh---------ccCCCCCHH-HHHHHHHHHHhcC
Confidence 777777743 1123221 111 11334456789999999887654 22211 222 2222577899999
Q ss_pred CHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC-----------CCC---HHHHHHHH
Q 003829 618 MVAKTNEILHFMNDSGFTP---SLTTYNTLMYMYSRSENFARAEDVLREILAKGI-----------KPD---IISYNTVI 680 (793)
Q Consensus 618 ~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----------~~~---~~~~~~l~ 680 (793)
++++|+..|+++.+..... .......+..++...|++++|..+++++..... .|+ ...+..++
T Consensus 287 ~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a 366 (765)
T PRK10049 287 QPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLS 366 (765)
T ss_pred CcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHH
Confidence 9999999999987653111 134566677788999999999999999987521 122 23456677
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCC
Q 003829 681 FAYCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPN-QNTYNSIVDGYCKLNQ 758 (793)
Q Consensus 681 ~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 758 (793)
..+...|++++|+++++++... .| +...+..++..+...|++++|++.++++++. .|+ ...+..++..+.+.|+
T Consensus 367 ~~l~~~g~~~eA~~~l~~al~~--~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l--~Pd~~~l~~~~a~~al~~~~ 442 (765)
T PRK10049 367 QVAKYSNDLPQAEMRARELAYN--APGNQGLRIDYASVLQARGWPRAAENELKKAEVL--EPRNINLEVEQAWTALDLQE 442 (765)
T ss_pred HHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHhCC
Confidence 8889999999999999999984 44 4688899999999999999999999999984 565 6777788888999999
Q ss_pred HHHHHHHHHHHhhCCCCCCHHH
Q 003829 759 RYEAITFVNNLSKLDPHVTKEL 780 (793)
Q Consensus 759 ~~~A~~~~~~~~~~~~~~~~~~ 780 (793)
+++|...++++++..|++..+.
T Consensus 443 ~~~A~~~~~~ll~~~Pd~~~~~ 464 (765)
T PRK10049 443 WRQMDVLTDDVVAREPQDPGVQ 464 (765)
T ss_pred HHHHHHHHHHHHHhCCCCHHHH
Confidence 9999999999999999987653
No 27
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.85 E-value=3.2e-16 Score=172.32 Aligned_cols=449 Identities=13% Similarity=0.112 Sum_probs=294.2
Q ss_pred HHcCCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHH
Q 003829 289 CRRGSLHEEAAGVFEEMKLAGFSPDK--VTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLE 366 (793)
Q Consensus 289 ~~~~~~~~~A~~~~~~~~~~g~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 366 (793)
..+.|+++.|+..|++..+. .|+. ..+ .++..+...|+.++|+.++++.... ..........++..|...|+++
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~--~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gdyd 119 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKA--GPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKRWD 119 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhh--CccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCCHH
Confidence 55677778888888777766 3442 233 6777777778888888877777521 1112223333355677778888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003829 367 EAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEIN 446 (793)
Q Consensus 367 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 446 (793)
+|+++|+++.+.. +-+...+..++..+...++.++|++.++.+... .|+...+..++..+...++..+|++.++++.
T Consensus 120 ~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll 196 (822)
T PRK14574 120 QALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAV 196 (822)
T ss_pred HHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 8888888877763 334555566667777777777777777777665 3444444444444444555555777777777
Q ss_pred hCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHH
Q 003829 447 KCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLST 526 (793)
Q Consensus 447 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 526 (793)
+.+ +.+...+..+..++.+.|-...|.++..+-. +..+-...... +.+.|.+..+... .+...-
T Consensus 197 ~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p------~~f~~~~~~~l-----~~~~~a~~vr~a~----~~~~~~ 260 (822)
T PRK14574 197 RLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENP------NLVSAEHYRQL-----ERDAAAEQVRMAV----LPTRSE 260 (822)
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCc------cccCHHHHHHH-----HHHHHHHHHhhcc----cccccc
Confidence 663 3345566666677777777766665544321 11111100000 0111111111111 000000
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhcC-CCCCCH-h----hHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCC
Q 003829 527 YNAVLAALARGGMWEQSEKIFAEMKGG-RCKPNE-L----TYSSLLHAYANGREIDQMLALSEEIYSERAFLELKKKGFS 600 (793)
Q Consensus 527 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~-~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 600 (793)
-. +---.+.|+.-++.+... +..|.. . ...-.+.++...+++.++++.|+. +...+.+
T Consensus 261 ----~~---r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~---------l~~~~~~ 324 (822)
T PRK14574 261 ----TE---RFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEA---------MEAEGYK 324 (822)
T ss_pred ----hh---hHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHH---------hhhcCCC
Confidence 00 000124555555555532 112321 1 222344567788999999988775 4455655
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC------
Q 003829 601 PDIPTLNAMISIYGRRQMVAKTNEILHFMNDSG-----FTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGI------ 669 (793)
Q Consensus 601 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~------ 669 (793)
.-..+-..+.++|...+++++|..+|+.+.... .+++......|..+|...+++++|..+++++.+...
T Consensus 325 ~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~ 404 (822)
T PRK14574 325 MPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVY 404 (822)
T ss_pred CCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEecc
Confidence 556788899999999999999999999997643 133455467899999999999999999999997411
Q ss_pred -----CCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 003829 670 -----KPD---IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP 741 (793)
Q Consensus 670 -----~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 741 (793)
.|| ...+..++..+...|+..+|++.++++...... |......++..+...|.+.+|.+.++.+.. +.|
T Consensus 405 ~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~-n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~--l~P 481 (822)
T PRK14574 405 GLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPA-NQNLRIALASIYLARDLPRKAEQELKAVES--LAP 481 (822)
T ss_pred CCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--hCC
Confidence 122 233455677788999999999999999984333 778899999999999999999999977765 466
Q ss_pred C-HHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHH
Q 003829 742 N-QNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKE 779 (793)
Q Consensus 742 ~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 779 (793)
+ ..+....+.++...|++++|..+.+++.+..|++...
T Consensus 482 ~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~ 520 (822)
T PRK14574 482 RSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPS 520 (822)
T ss_pred ccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhH
Confidence 5 6777788999999999999999999999999997754
No 28
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.85 E-value=1.5e-16 Score=179.12 Aligned_cols=408 Identities=12% Similarity=0.067 Sum_probs=297.2
Q ss_pred cHHHHHHHhccCCChHHHHHHHHHHHhccCCCCCccchHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHH
Q 003829 135 DLLGIVKGLGFHKKTDLALDVFEWFRSCCSKDGNLVLRGSVIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSL 214 (793)
Q Consensus 135 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 214 (793)
.+...+......|+.++|+.++..+.. ..+....++..+..++...|++++|.++++.+++..+. +...+..+
T Consensus 17 ~~~d~~~ia~~~g~~~~A~~~~~~~~~------~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~l 89 (765)
T PRK10049 17 QIADWLQIALWAGQDAEVITVYNRYRV------HMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQ-NDDYQRGL 89 (765)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHH
Confidence 344445556678999999999888764 12346667888999999999999999999998877544 67778889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC
Q 003829 215 ITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSL 294 (793)
Q Consensus 215 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 294 (793)
+.++...|++++|+..++++.+.. +.+.. +..+..++...| +.++|+..++++.+..+. +...+..+..++...+.
T Consensus 90 a~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g-~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~ 165 (765)
T PRK10049 90 ILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAG-RHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRL 165 (765)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCC-CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCC
Confidence 999999999999999999998874 33556 888888899999 899999999999987654 55566667777888899
Q ss_pred HHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHH-----hcCCh---HHHHHHHHHHHHc-CCCCChh-HH----HH
Q 003829 295 HEEAAGVFEEMKLAGFSPDK------VTYNALLDVYG-----KCRRP---KEAMQVLREMKIN-GCLPSIV-TY----NS 354 (793)
Q Consensus 295 ~~~A~~~~~~~~~~g~~~~~------~~~~~li~~~~-----~~g~~---~~A~~~~~~~~~~-~~~~~~~-~~----~~ 354 (793)
.++|...++.+.. .|+. .....++.... ..+++ ++|++.++.+.+. ...|+.. .+ ..
T Consensus 166 ~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d 242 (765)
T PRK10049 166 SAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARID 242 (765)
T ss_pred hHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHH
Confidence 9999988876654 2221 11222233222 12234 6788888888754 1222221 11 11
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHH
Q 003829 355 LISAYARDGLLEEAMELKTQMVEIGIT-PDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKP---NICTFNALIKMHG 430 (793)
Q Consensus 355 li~~~~~~g~~~~A~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~ 430 (793)
.+..+...|++++|++.|+.+.+.+.. |+. ....+...|...|++++|+.+|+++.+..... .......+..++.
T Consensus 243 ~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~ 321 (765)
T PRK10049 243 RLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLL 321 (765)
T ss_pred HHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHH
Confidence 133456779999999999999887532 332 22235678889999999999999987653211 1345666677788
Q ss_pred hcCCHHHHHHHHHHHHhCCC-----------CCC---HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003829 431 NRGNFVEMMKVFDEINKCNC-----------KPD---IVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLI 496 (793)
Q Consensus 431 ~~g~~~~A~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~ 496 (793)
..|++++|.+.++.+..... .|+ ...+..+...+...|+.++|+++++++....+ .+...+..++
T Consensus 322 ~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P-~n~~l~~~lA 400 (765)
T PRK10049 322 ESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAP-GNQGLRIDYA 400 (765)
T ss_pred hcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHH
Confidence 99999999999998876531 122 23445667788889999999999999887643 3677888888
Q ss_pred HHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHhh
Q 003829 497 SAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELT 561 (793)
Q Consensus 497 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 561 (793)
..+...|++++|++.++++.+..+. +...+......+.+.|++++|..+++++++. .|+...
T Consensus 401 ~l~~~~g~~~~A~~~l~~al~l~Pd-~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~--~Pd~~~ 462 (765)
T PRK10049 401 SVLQARGWPRAAENELKKAEVLEPR-NINLEVEQAWTALDLQEWRQMDVLTDDVVAR--EPQDPG 462 (765)
T ss_pred HHHHhcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCHH
Confidence 8899999999999999998887543 5667777777888889999999999999875 455443
No 29
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.84 E-value=7.6e-15 Score=152.79 Aligned_cols=576 Identities=11% Similarity=0.038 Sum_probs=338.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003829 176 IAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGK 255 (793)
Q Consensus 176 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~ 255 (793)
.-..+..+...|++++|..++.+++++.+. ....|..|..+|-..|+.+++...+-.+-..++ -|...|-.+.....+
T Consensus 142 ll~eAN~lfarg~~eeA~~i~~EvIkqdp~-~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p-~d~e~W~~ladls~~ 219 (895)
T KOG2076|consen 142 LLGEANNLFARGDLEEAEEILMEVIKQDPR-NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNP-KDYELWKRLADLSEQ 219 (895)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHcccHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHh
Confidence 333445566679999999999999998665 778999999999999999999999888876653 367899999999999
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHH----HHHHHHHhcCChH
Q 003829 256 MGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYN----ALLDVYGKCRRPK 331 (793)
Q Consensus 256 ~g~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~----~li~~~~~~g~~~ 331 (793)
.| .++.|.-.|.+.++..+. +...+-.-...|-+.|+...|...|.++.....+.|..-.. ..++.|...++-+
T Consensus 220 ~~-~i~qA~~cy~rAI~~~p~-n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e 297 (895)
T KOG2076|consen 220 LG-NINQARYCYSRAIQANPS-NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERE 297 (895)
T ss_pred cc-cHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHH
Confidence 99 899999999999988644 44444455667889999999999999999874322322222 3356677788889
Q ss_pred HHHHHHHHHHHc-CCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH-----------------------
Q 003829 332 EAMQVLREMKIN-GCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTY----------------------- 387 (793)
Q Consensus 332 ~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~----------------------- 387 (793)
.|.+.++..... +...+...++.++..+.+...++.|......+......+|..-+
T Consensus 298 ~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~ 377 (895)
T KOG2076|consen 298 RAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYD 377 (895)
T ss_pred HHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCcc
Confidence 999999888763 23345668889999999999999999988888763333332211
Q ss_pred ---HHHHHHHHHcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 003829 388 ---TTLLSGFEKAGKDESAMKVFEEMRSAG--CKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLA 462 (793)
Q Consensus 388 ---~~li~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 462 (793)
.-++-++......+....+...+.+.. +..+...|.-+..+|...|++.+|+++|..+.....--+...|-.+..
T Consensus 378 l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~ 457 (895)
T KOG2076|consen 378 LRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLAR 457 (895)
T ss_pred chhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHH
Confidence 111222233333333333334444333 233445555666666666666666666666655443344555666666
Q ss_pred HHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC--------CCCCCHHHHHHHHHHH
Q 003829 463 VFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEA--------GVTPDLSTYNAVLAAL 534 (793)
Q Consensus 463 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--------~~~~~~~~~~~l~~~~ 534 (793)
.|...|.+++|.+.|+..+...+. +...-..|...+-+.|+.++|.+.++.+..- +..|+..........+
T Consensus 458 c~~~l~e~e~A~e~y~kvl~~~p~-~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l 536 (895)
T KOG2076|consen 458 CYMELGEYEEAIEFYEKVLILAPD-NLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDIL 536 (895)
T ss_pred HHHHHhhHHHHHHHHHHHHhcCCC-chhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHH
Confidence 666666666666666665554322 3444455555555666666666665554311 1222233333333444
Q ss_pred HhcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003829 535 ARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSERAFLELKKKGFSPDIPTLNAMISIYG 614 (793)
Q Consensus 535 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 614 (793)
.+.|+.++-..+...|.... .....+. -+..++.. ......+..-.......++.+-.
T Consensus 537 ~~~gk~E~fi~t~~~Lv~~~------~~~~~~f-----~~~~k~r~-----------~~~~~~~~~~~~~~~~~~~~~~~ 594 (895)
T KOG2076|consen 537 FQVGKREEFINTASTLVDDF------LKKRYIF-----PRNKKKRR-----------RAIAGTTSKRYSELLKQIIRARE 594 (895)
T ss_pred HHhhhHHHHHHHHHHHHHHH------HHHHHhc-----chHHHHHH-----------HhhccccccccchhHHHHHHHHh
Confidence 45555554444433333210 0000000 00000000 00000011112222333333333
Q ss_pred hcCCHHHHHH------HHHHHHhCCCCCCHH--HHHHHHHHHHccCCHHHHHHHHHHHHHCCC--CCCH---HHHHHHHH
Q 003829 615 RRQMVAKTNE------ILHFMNDSGFTPSLT--TYNTLMYMYSRSENFARAEDVLREILAKGI--KPDI---ISYNTVIF 681 (793)
Q Consensus 615 ~~g~~~~A~~------~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~---~~~~~l~~ 681 (793)
+.++...... .+......+...+.. .+..++..+++.+.+++|+.+...+..... .++. ..-..++.
T Consensus 595 k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~ 674 (895)
T KOG2076|consen 595 KATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLK 674 (895)
T ss_pred ccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHH
Confidence 3332111111 111111223222222 345677788899999999999988876531 1121 22345566
Q ss_pred HHHHcCCHHHHHHHHHHHHHC-CC--CCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHc
Q 003829 682 AYCRNGRMKEASRIFSEMRDS-GL--VPD-VITYNTFVASYAADSLFVEALDVVRYMIKQGCKPN--QNTYNSIVDGYCK 755 (793)
Q Consensus 682 ~~~~~g~~~~A~~~~~~~~~~-~~--~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~ 755 (793)
+.+..+++.+|...+..|... +. .|. ...|+.......+.|+-.-=.+++..+... .|+ ...+...+.-+..
T Consensus 675 ~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~--~~~~~~~l~~i~gh~~~~ 752 (895)
T KOG2076|consen 675 ASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVK--NKDDTPPLALIYGHNLFV 752 (895)
T ss_pred HHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--CccCCcceeeeechhHhh
Confidence 778889999999999999874 22 221 134444444444555433333333333322 222 3333334455667
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHHH
Q 003829 756 LNQRYEAITFVNNLSKLDPHVTKEL 780 (793)
Q Consensus 756 ~g~~~~A~~~~~~~~~~~~~~~~~~ 780 (793)
.+.+.-|...+-++...+|+++-+.
T Consensus 753 ~~s~~~Al~~y~ra~~~~pd~Pl~n 777 (895)
T KOG2076|consen 753 NASFKHALQEYMRAFRQNPDSPLIN 777 (895)
T ss_pred ccchHHHHHHHHHHHHhCCCCcHHH
Confidence 8899999999999999999977764
No 30
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.82 E-value=4.2e-15 Score=163.63 Aligned_cols=474 Identities=10% Similarity=0.065 Sum_probs=284.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003829 207 DVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLI 286 (793)
Q Consensus 207 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 286 (793)
.+.+.-.-+....+.|+++.|+..|++..+..+.-....+ .++..+...| +.++|+..+++..... .........+.
T Consensus 33 ~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G-~~~~A~~~~eka~~p~-n~~~~~llalA 109 (822)
T PRK14574 33 MADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAG-RDQEVIDVYERYQSSM-NISSRGLASAA 109 (822)
T ss_pred chhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcC-CcHHHHHHHHHhccCC-CCCHHHHHHHH
Confidence 3344444455567999999999999999887432112233 7777788888 8899999999887211 11233333345
Q ss_pred HHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHH
Q 003829 287 SCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLE 366 (793)
Q Consensus 287 ~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 366 (793)
..+...|++++|.++++++.+.. +-+...+..++..|.+.++.++|++.++++... .|+...+..++..+...++..
T Consensus 110 ~ly~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~ 186 (822)
T PRK14574 110 RAYRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNY 186 (822)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHH
Confidence 57788899999999999998874 234666777788888999999999999998764 445555544444444466666
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003829 367 EAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEIN 446 (793)
Q Consensus 367 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 446 (793)
+|++.++++.+.. +.+...+..++.++.+.|-...|.++.++-... +.+.. +.-| . .+.|.+..+...
T Consensus 187 ~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~--~~~l-~-------~~~~a~~vr~a~ 254 (822)
T PRK14574 187 DALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEH--YRQL-E-------RDAAAEQVRMAV 254 (822)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHH--HHHH-H-------HHHHHHHHhhcc
Confidence 6999999999874 446777788888888888888888776653321 11111 1110 0 011111111100
Q ss_pred hCCCCCCHHHHHHHHHHHHhCCC---hHHHHHHHHHHHHc-CCCCCHH-----HHHHHHHHHhccCCHHHHHHHHHHHHH
Q 003829 447 KCNCKPDIVTWNTLLAVFGQNGM---DSEVSGVFKEMKRA-GFIPERD-----TFNTLISAYSRCGSFDQAMSIYKRMLE 517 (793)
Q Consensus 447 ~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~m~~~-~~~~~~~-----~~~~l~~~~~~~g~~~~a~~~~~~~~~ 517 (793)
. +.. ...++ .+.|+.-++.+... +..|... ...-.+-++...|++.++++.|+.+..
T Consensus 255 ~----~~~----------~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~ 320 (822)
T PRK14574 255 L----PTR----------SETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEA 320 (822)
T ss_pred c----ccc----------cchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhh
Confidence 0 000 00001 12233333333321 1112111 112233345555666666666666666
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCC-----CCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHH
Q 003829 518 AGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRC-----KPNELTYSSLLHAYANGREIDQMLALSEEIYSERAFL 592 (793)
Q Consensus 518 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 592 (793)
.+......+-..+.++|...+++++|..+++.+..... .++......|.-++...+++++|..+++++.......
T Consensus 321 ~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~ 400 (822)
T PRK14574 321 EGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQ 400 (822)
T ss_pred cCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcE
Confidence 55444445556666666666666666666666543210 1122223455566666666666666665543200000
Q ss_pred --HHH--HCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 003829 593 --ELK--KKGFSPD-IPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAK 667 (793)
Q Consensus 593 --~~~--~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 667 (793)
... .....|| ...+..++..+...|++.+|.+.++++.... |-|......+.+.+...|.+.+|++.++.+...
T Consensus 401 ~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l 479 (822)
T PRK14574 401 VGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESL 479 (822)
T ss_pred EeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh
Confidence 000 0011122 2234445666778888999999998887764 778888888888888899999999988776664
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003829 668 GIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVA 716 (793)
Q Consensus 668 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 716 (793)
-+.+..+....+.++...|++++|..+.+.+.+ ..|+......|-+
T Consensus 480 -~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~--~~Pe~~~~~~l~r 525 (822)
T PRK14574 480 -APRSLILERAQAETAMALQEWHQMELLTDDVIS--RSPEDIPSQELDR 525 (822)
T ss_pred -CCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--hCCCchhHHHHHH
Confidence 233456677777888888899999888888888 5565543333333
No 31
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.81 E-value=1.1e-15 Score=145.90 Aligned_cols=491 Identities=13% Similarity=0.088 Sum_probs=252.1
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHH---
Q 003829 205 DIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITY-NVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSY--- 280 (793)
Q Consensus 205 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~-~~ll~~~~~~g~~~~~a~~~~~~~~~~~~~p~~~--- 280 (793)
..+..+...|..-|..+..+.+|+..|+-+.+...-|+.-.. ..+.+.+.+.. .+.+|+++++..+..-+.-+..
T Consensus 198 dltfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr-~fskaikfyrmaldqvpsink~~ri 276 (840)
T KOG2003|consen 198 DLTFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKR-EFSKAIKFYRMALDQVPSINKDMRI 276 (840)
T ss_pred cchHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehh-hHHHHHHHHHHHHhhccccchhhHH
Confidence 345556667777788888889999999888877666665433 23556666666 7899999998877654433333
Q ss_pred -HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC------------
Q 003829 281 -TFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLP------------ 347 (793)
Q Consensus 281 -~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~------------ 347 (793)
..+.+...+.+.|.++.|+..|+...+. .|+..+-..|+-++.-.|+-++..+.|.+|+.--..+
T Consensus 277 kil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp 354 (840)
T KOG2003|consen 277 KILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDP 354 (840)
T ss_pred HHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCc
Confidence 3344444577889999999999888776 5777766666666667888899999998887542222
Q ss_pred ChhHHHHHHH-----HHHhcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 003829 348 SIVTYNSLIS-----AYARDG--LLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNIC 420 (793)
Q Consensus 348 ~~~~~~~li~-----~~~~~g--~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 420 (793)
+....+.-|. -.-+.. +-++++-.--+++.--+.|+- ..= .+-..+.++.-....+..+
T Consensus 355 ~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~f---a~g---------~dwcle~lk~s~~~~la~d-- 420 (840)
T KOG2003|consen 355 DDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDF---AAG---------CDWCLESLKASQHAELAID-- 420 (840)
T ss_pred chHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccch---hcc---------cHHHHHHHHHhhhhhhhhh--
Confidence 2222222111 011100 011111111111111111210 000 0111111111111000001
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003829 421 TFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQ--NGMDSEVSGVFKEMKRAGFIPERDTFNTLISA 498 (793)
Q Consensus 421 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~ 498 (793)
.-..-..-|.++|+++.|+++++-+.+..-+..+..-+.|...+.. -.++.+|..+-+..+... .-+......-...
T Consensus 421 lei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~ 499 (840)
T KOG2003|consen 421 LEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNI 499 (840)
T ss_pred hhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCce
Confidence 1111223466788888888888777665433333333333222222 234455555544443321 1122222222223
Q ss_pred HhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHH---HHHHhcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHcCCCH
Q 003829 499 YSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVL---AALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREI 575 (793)
Q Consensus 499 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 575 (793)
....|+++.|.+.|++.+.. |...-.+|. -.+...|+.++|++.|-++..- ...+..++..+...|....+.
T Consensus 500 ~f~ngd~dka~~~ykeal~n----dasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~ 574 (840)
T KOG2003|consen 500 AFANGDLDKAAEFYKEALNN----DASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDP 574 (840)
T ss_pred eeecCcHHHHHHHHHHHHcC----chHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCH
Confidence 34456777777777777664 333322222 2345566777777776665421 122444555555556555566
Q ss_pred HHHHHHHHHHHhHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHH
Q 003829 576 DQMLALSEEIYSERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFA 655 (793)
Q Consensus 576 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 655 (793)
..|++++.++ ..-++.|+.++..|.+.|-+.|+-..|...+-.-.+. ++-+..+..-|...|....-++
T Consensus 575 aqaie~~~q~----------~slip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~e 643 (840)
T KOG2003|consen 575 AQAIELLMQA----------NSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSE 643 (840)
T ss_pred HHHHHHHHHh----------cccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHH
Confidence 6666554332 1223444555555666666666655555554444333 3455555555555555555555
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 003829 656 RAEDVLREILAKGIKPDIISYNTVIF-AYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRY 733 (793)
Q Consensus 656 ~A~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 733 (793)
+|+.+|++..- +.|+..-|..|+. ++.+.|+++.|.++|+...+. +.-|...+.-|++.+...|. .+|.++..+
T Consensus 644 kai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl-~d~key~~k 718 (840)
T KOG2003|consen 644 KAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL-KDAKEYADK 718 (840)
T ss_pred HHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc-hhHHHHHHH
Confidence 66666655554 3555555555443 333445666666666555542 22244455555555544443 234444333
No 32
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.79 E-value=6.1e-13 Score=128.21 Aligned_cols=396 Identities=10% Similarity=0.090 Sum_probs=222.5
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 003829 292 GSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMEL 371 (793)
Q Consensus 292 ~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 371 (793)
.|++..|.++|++-..- .|+...|.+.|+.-.+.+.++.|..+++..+- +.|++.+|-..+..-.+.|.+..|..+
T Consensus 154 LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~V 229 (677)
T KOG1915|consen 154 LGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSV 229 (677)
T ss_pred hcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHH
Confidence 35666666666666553 56666666666666666666666666666544 456666666666666666666666666
Q ss_pred HHHHHHcCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003829 372 KTQMVEIGI--TPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPN--ICTFNALIKMHGNRGNFVEMMKVFDEINK 447 (793)
Q Consensus 372 ~~~m~~~g~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 447 (793)
++..++.=. ..+...+.++...-..+..++.|.-+|+-.++.- +.+ ...|..+...--+-|+.....+..-.-
T Consensus 230 yerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~K-- 306 (677)
T KOG1915|consen 230 YERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGK-- 306 (677)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHhhh--
Confidence 666554310 0112233333333345566777777777766652 212 233333333333344433222221100
Q ss_pred CCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCH-HH
Q 003829 448 CNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDL-ST 526 (793)
Q Consensus 448 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~ 526 (793)
-.--++.+++.+ +.|-.++...++.....|+.+...++|+.++..-.+... ..
T Consensus 307 -------------------------Rk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~ 360 (677)
T KOG1915|consen 307 -------------------------RKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRY 360 (677)
T ss_pred -------------------------hhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHH
Confidence 001123333333 235566666666666666666666666666654211111 11
Q ss_pred HHHHH-----HHH---HhcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHHH----cCCCHHHHHHHHHHHHhHHHHHHH
Q 003829 527 YNAVL-----AAL---ARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYA----NGREIDQMLALSEEIYSERAFLEL 594 (793)
Q Consensus 527 ~~~l~-----~~~---~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~ 594 (793)
|...| -++ ....+.+.+.++++..++. ++....|+..+--.|+ +..++..|.+++..
T Consensus 361 W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~---------- 429 (677)
T KOG1915|consen 361 WRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGN---------- 429 (677)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHH----------
Confidence 11111 111 2356667777777777662 3445555555444443 45666777666553
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC-CCCCH
Q 003829 595 KKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKG-IKPDI 673 (793)
Q Consensus 595 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~ 673 (793)
..|..|...+|...|..-.+.++++.+..++++.++.+ |.|..+|......-...|+.++|..+|+-+++.. +....
T Consensus 430 -AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpe 507 (677)
T KOG1915|consen 430 -AIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPE 507 (677)
T ss_pred -HhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHH
Confidence 34667777777777777777777777777777777765 5567777777777777777888888877777642 22235
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-----hcC-----------ChHHHHHHHHHHH
Q 003829 674 ISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYA-----ADS-----------LFVEALDVVRYMI 735 (793)
Q Consensus 674 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~-----~~g-----------~~~~A~~~~~~~~ 735 (793)
..|.+.|+.-...|.++.|..+++++++... -..+|..++..-. +.| ....|..+|+++.
T Consensus 508 llwkaYIdFEi~~~E~ekaR~LYerlL~rt~--h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn 583 (677)
T KOG1915|consen 508 LLWKAYIDFEIEEGEFEKARALYERLLDRTQ--HVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERAN 583 (677)
T ss_pred HHHHHhhhhhhhcchHHHHHHHHHHHHHhcc--cchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHH
Confidence 5677777777777777888888877777422 2234444433222 233 4556677776664
No 33
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.78 E-value=5e-14 Score=133.84 Aligned_cols=343 Identities=16% Similarity=0.203 Sum_probs=228.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 003829 207 DVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMG--MPWNKIMALVEGMKSAGVKPDSYTFNT 284 (793)
Q Consensus 207 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g--~~~~~a~~~~~~~~~~~~~p~~~~~~~ 284 (793)
.+.+=|.|+... ..|..+++.-+|++|...|++.+...-..|+...+-.+ ...-.-.+.|-.|.+.|-. ...+|
T Consensus 115 ~V~~E~nL~kmI-S~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~-S~~sW-- 190 (625)
T KOG4422|consen 115 QVETENNLLKMI-SSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGED-STSSW-- 190 (625)
T ss_pred hhcchhHHHHHH-hhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccc-ccccc--
Confidence 455667776654 67889999999999999998877776666665544322 1111223333344443322 11122
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC
Q 003829 285 LISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGL 364 (793)
Q Consensus 285 l~~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 364 (793)
+.|... . ++-+.. +.+..+|..+|.+.||.-..+.|.+++++......+.+..+||.+|.+-.-.
T Consensus 191 ------K~G~vA--d-L~~E~~----PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~-- 255 (625)
T KOG4422|consen 191 ------KSGAVA--D-LLFETL----PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS-- 255 (625)
T ss_pred ------ccccHH--H-HHHhhc----CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh--
Confidence 223332 2 222222 3467788888888888888888888888887776777888888887654322
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH-HH
Q 003829 365 LEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDES----AMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVE-MM 439 (793)
Q Consensus 365 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~ 439 (793)
...+++.+|....+.||..|+|.++.+..+.|+++. |.+++.+|++.|+.|...+|..++..+++.++..+ +.
T Consensus 256 --~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as 333 (625)
T KOG4422|consen 256 --VGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVAS 333 (625)
T ss_pred --ccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhH
Confidence 226788888888888888888888888888887765 45777888888888888888888888888777533 44
Q ss_pred HHHHHHHh----CCCC----CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcC----CCCCH---HHHHHHHHHHhccCC
Q 003829 440 KVFDEINK----CNCK----PDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAG----FIPER---DTFNTLISAYSRCGS 504 (793)
Q Consensus 440 ~~~~~~~~----~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~----~~~~~---~~~~~l~~~~~~~g~ 504 (793)
.++.++.. +..+ .|..-+...+..|....+.+-|.++-.-+.... +.|+. .-|..+....|....
T Consensus 334 ~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es 413 (625)
T KOG4422|consen 334 SWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMES 413 (625)
T ss_pred HHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHH
Confidence 44444322 2222 234556666777777777777777655444211 22221 245667777788888
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHHH
Q 003829 505 FDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYA 570 (793)
Q Consensus 505 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 570 (793)
.+.....|+.|+-.-+-|+..+...++++....|.++-..+++.+++..|..-+......++..++
T Consensus 414 ~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~ 479 (625)
T KOG4422|consen 414 IDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLA 479 (625)
T ss_pred HHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHh
Confidence 888888888888877777888888888888888888888888888887664444444444444333
No 34
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.77 E-value=7e-14 Score=132.88 Aligned_cols=453 Identities=16% Similarity=0.188 Sum_probs=284.0
Q ss_pred hcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH--HcCCHHHH-HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHH
Q 003829 185 KEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYA--SNGRYREA-VMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWN 261 (793)
Q Consensus 185 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~A-~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~ 261 (793)
.+|.+..+.-+++.|...|.+.+..+...|.+..+ .+.+.--| .+.|-.|.+.| ..+..+|. .| +
T Consensus 127 S~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sWK--------~G---~ 194 (625)
T KOG4422|consen 127 SSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSWK--------SG---A 194 (625)
T ss_pred hhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-cccccccc--------cc---c
Confidence 47788888888999988888888877777765543 33332222 34555555554 22333442 23 2
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003829 262 KIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMK 341 (793)
Q Consensus 262 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 341 (793)
-|.-+++... -...+|.++|.++|+-...+.|.+++++......+.+..++|.+|.+-.-. .-.+++.+|.
T Consensus 195 vAdL~~E~~P-----KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMi 265 (625)
T KOG4422|consen 195 VADLLFETLP-----KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMI 265 (625)
T ss_pred HHHHHHhhcC-----CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHH
Confidence 2333333221 256678888888888888888888888877766677788888887654322 2267777887
Q ss_pred HcCCCCChhHHHHHHHHHHhcCCHHH----HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHH----
Q 003829 342 INGCLPSIVTYNSLISAYARDGLLEE----AMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDES-AMKVFEEMRS---- 412 (793)
Q Consensus 342 ~~~~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~-a~~~~~~~~~---- 412 (793)
.....||..|+|+++.+..+.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+ +..++.++..
T Consensus 266 sqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltG 345 (625)
T KOG4422|consen 266 SQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTG 345 (625)
T ss_pred HhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhcc
Confidence 77788888888888888888887654 45677788888888888888888888887776633 4444444432
Q ss_pred CCC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCCC---HHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 003829 413 AGC----KPNICTFNALIKMHGNRGNFVEMMKVFDEINKCN----CKPD---IVTWNTLLAVFGQNGMDSEVSGVFKEMK 481 (793)
Q Consensus 413 ~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 481 (793)
+.+ +.|...+...+..|.+..+.+.|.++..-+.... +.++ ..-|..+....|+....+.....|+.|.
T Consensus 346 K~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lV 425 (625)
T KOG4422|consen 346 KTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLV 425 (625)
T ss_pred CcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 222 2244556666777777777777777765553321 1222 2345667777788888888888888888
Q ss_pred HcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHh-
Q 003829 482 RAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNEL- 560 (793)
Q Consensus 482 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~- 560 (793)
-.-+.|+..+...++++....|.++-.-++|..++..|.......... ++..|......|+..
T Consensus 426 P~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~ee----------------il~~L~~~k~hp~tp~ 489 (625)
T KOG4422|consen 426 PSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREE----------------ILMLLARDKLHPLTPE 489 (625)
T ss_pred cceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHH----------------HHHHHhcCCCCCCChH
Confidence 877778888888888888888888888888888887654433222222 222233222223222
Q ss_pred --hHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC----C
Q 003829 561 --TYSSLLHAYANGREIDQMLALSEEIYSERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSG----F 634 (793)
Q Consensus 561 --~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~ 634 (793)
-+.....-|+ -++.++.+. . -..+.+ ........+.++-.+.+.|+.++|.+++..+.+.+ .
T Consensus 490 r~Ql~~~~ak~a--ad~~e~~e~---~-----~~R~r~--~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~ 557 (625)
T KOG4422|consen 490 REQLQVAFAKCA--ADIKEAYES---Q-----PIRQRA--QDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPR 557 (625)
T ss_pred HHHHHHHHHHHH--HHHHHHHHh---h-----HHHHHh--ccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCC
Confidence 1222222111 011111111 1 112333 34455667777777888899999999988885542 2
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 003829 635 TPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRN 686 (793)
Q Consensus 635 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 686 (793)
.|.......+++.-.+.++...|..+++-+...+.+--.-.-+-+...|.-+
T Consensus 558 ~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~~~E~La~RI~e~f~iN 609 (625)
T KOG4422|consen 558 SPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLPICEGLAQRIMEDFAIN 609 (625)
T ss_pred CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCchhhhHHHHHHHHhcCcC
Confidence 3444445567777778888999999998887664332222344444455444
No 35
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.77 E-value=1.1e-12 Score=126.62 Aligned_cols=438 Identities=12% Similarity=0.074 Sum_probs=310.3
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHH
Q 003829 172 RGSVIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLI-TYNVIL 250 (793)
Q Consensus 172 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~ll 250 (793)
+...|.....-=...+++..|..+|+.++..+.. +...|...+.+-.++.....|..+|++.... -|.+. .|.-.+
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r-~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ 148 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVDYR-NITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYI 148 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccc-cchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHH
Confidence 4445666666666788999999999999877654 7778999999999999999999999999875 34443 455555
Q ss_pred HHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 003829 251 NVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRP 330 (793)
Q Consensus 251 ~~~~~~g~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 330 (793)
-.--..| +...|.++|+..... .|+...|++.+..-.+-+..+.|..++++.+-. .|++.+|-.....-.++|+.
T Consensus 149 ymEE~Lg-Ni~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~ 223 (677)
T KOG1915|consen 149 YMEEMLG-NIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNV 223 (677)
T ss_pred HHHHHhc-ccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcH
Confidence 5555667 899999999998875 799999999999999999999999999999865 69999999999999999999
Q ss_pred HHHHHHHHHHHHc-CC-CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCCHHHHHHH
Q 003829 331 KEAMQVLREMKIN-GC-LPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPD--VFTYTTLLSGFEKAGKDESAMKV 406 (793)
Q Consensus 331 ~~A~~~~~~~~~~-~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~a~~~ 406 (793)
..|..+|+...+. |. .-+...+.+....-.++..++.|.-+|+-.+.. ++-+ ...|......--+-|+.....+.
T Consensus 224 ~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~ 302 (677)
T KOG1915|consen 224 ALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDA 302 (677)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHH
Confidence 9999999988765 11 112335666666667788899999999988876 3333 33444444444455665444333
Q ss_pred --------HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHH--------HHHHhCC
Q 003829 407 --------FEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDI--VTWNTLL--------AVFGQNG 468 (793)
Q Consensus 407 --------~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~--------~~~~~~~ 468 (793)
++.+++.+ +.|-.+|-..++.-...|+.+...++|++.+.. ++|-. ..|.-.| -.-....
T Consensus 303 Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~e 380 (677)
T KOG1915|consen 303 IVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAE 380 (677)
T ss_pred HhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444443 457778888888888889999999999998865 33321 1222222 2223567
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHH----HHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 003829 469 MDSEVSGVFKEMKRAGFIPERDTFNT----LISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSE 544 (793)
Q Consensus 469 ~~~~a~~~~~~m~~~~~~~~~~~~~~----l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 544 (793)
+.+.+.++|+..++. ++....||.. ......++.++..|.+++..++. ..|...++...|..-.+.++++.+.
T Consensus 381 d~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcR 457 (677)
T KOG1915|consen 381 DVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCR 457 (677)
T ss_pred hHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHH
Confidence 778888888887773 3334444433 33334567778888888877664 4677778888888778888888888
Q ss_pred HHHHHHhcCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003829 545 KIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNE 624 (793)
Q Consensus 545 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 624 (793)
.++++.++.+ +-+..+|......-...|+.+.|..+|+-.++ +..+..-...|-+.|+.-...|.+++|..
T Consensus 458 kLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~--------qp~ldmpellwkaYIdFEi~~~E~ekaR~ 528 (677)
T KOG1915|consen 458 KLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAIS--------QPALDMPELLWKAYIDFEIEEGEFEKARA 528 (677)
T ss_pred HHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhc--------CcccccHHHHHHHhhhhhhhcchHHHHHH
Confidence 8888888753 33666777776666677777777777765443 11122223345555555556666777777
Q ss_pred HHHHHHhC
Q 003829 625 ILHFMNDS 632 (793)
Q Consensus 625 ~~~~~~~~ 632 (793)
+++++++.
T Consensus 529 LYerlL~r 536 (677)
T KOG1915|consen 529 LYERLLDR 536 (677)
T ss_pred HHHHHHHh
Confidence 77666654
No 36
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.74 E-value=4.3e-14 Score=135.09 Aligned_cols=261 Identities=12% Similarity=0.122 Sum_probs=113.7
Q ss_pred HHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHHh-cCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHcCCCH
Q 003829 498 AYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLA-ALAR-GGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREI 575 (793)
Q Consensus 498 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~-~~~~-~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 575 (793)
.+.+.|+++.|.++++-+.+++-+.....-+.|-. .|.+ ..++.+|..+-+.....+ .-+......-.......|++
T Consensus 428 ~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~ 506 (840)
T KOG2003|consen 428 ELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDL 506 (840)
T ss_pred HHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcH
Confidence 46677888888888777766533222222222221 1222 223444444444333211 11222111111222234555
Q ss_pred HHHHHHHHHHHhHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHH
Q 003829 576 DQMLALSEEIYSERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFA 655 (793)
Q Consensus 576 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 655 (793)
++|.+.|++.+..+ ..-...+-.+.-.+-..|++++|+++|-++... +..+..++-.+.+.|....+..
T Consensus 507 dka~~~ykeal~nd----------asc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~a 575 (840)
T KOG2003|consen 507 DKAAEFYKEALNND----------ASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPA 575 (840)
T ss_pred HHHHHHHHHHHcCc----------hHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHH
Confidence 55555555433100 000111122222334445555555555444332 1234444444445555555555
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 003829 656 RAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSLFVEALDVVRYM 734 (793)
Q Consensus 656 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 734 (793)
.|++++-+.... ++.|+.+...|...|-+.|+-..|..++-.-.+ ..| +..+..-|+.-|....-+++|+.+|+++
T Consensus 576 qaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~eka 652 (840)
T KOG2003|consen 576 QAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKA 652 (840)
T ss_pred HHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 555555444443 333444555555555555555555544433333 222 3344444444444444455555555554
Q ss_pred HHcCCCCCHHHHHHHH-HHHHccCCHHHHHHHHHHHhhCCCC
Q 003829 735 IKQGCKPNQNTYNSIV-DGYCKLNQRYEAITFVNNLSKLDPH 775 (793)
Q Consensus 735 ~~~~~~p~~~~~~~l~-~~~~~~g~~~~A~~~~~~~~~~~~~ 775 (793)
.- ++|+..-|..++ .++.+.|++.+|.++|+..-..-|+
T Consensus 653 al--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpe 692 (840)
T KOG2003|consen 653 AL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPE 692 (840)
T ss_pred Hh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCcc
Confidence 32 345544454332 2333445555555555555555544
No 37
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=4.2e-13 Score=132.69 Aligned_cols=277 Identities=15% Similarity=0.072 Sum_probs=222.1
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHhhHHHH
Q 003829 486 IPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSL 565 (793)
Q Consensus 486 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 565 (793)
.-+.........-+...+++.+..++++.+.+.... ....+..-|..+...|+..+-..+-.++.+. .+....+|-++
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpf-h~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aV 318 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEKDPF-HLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAV 318 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCC-CcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhH
Confidence 346667777778888999999999999999987433 5555666667888889888888888888775 35577899999
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 003829 566 LHAYANGREIDQMLALSEEIYSERAFLELKKKGFSPD-IPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTL 644 (793)
Q Consensus 566 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 644 (793)
.--|...|+..+|.+.+.+.. .+.+. ...|...+..|+-.|..++|...+....+.- +-...-+--+
T Consensus 319 g~YYl~i~k~seARry~SKat-----------~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYl 386 (611)
T KOG1173|consen 319 GCYYLMIGKYSEARRYFSKAT-----------TLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYL 386 (611)
T ss_pred HHHHHHhcCcHHHHHHHHHHh-----------hcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHH
Confidence 988888999999999987543 33443 5689999999999999999999998887651 2222222334
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCC---C-CHHHHHHHHHHH
Q 003829 645 MYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDS--GLV---P-DVITYNTFVASY 718 (793)
Q Consensus 645 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~---p-~~~~~~~l~~~~ 718 (793)
.--|.+.++++.|.++|.+.... .+.|+...+.++-.....+.+.+|..+|+..++. ... + -..+++.|+.+|
T Consensus 387 gmey~~t~n~kLAe~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~ 465 (611)
T KOG1173|consen 387 GMEYMRTNNLKLAEKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAY 465 (611)
T ss_pred HHHHHHhccHHHHHHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHH
Confidence 45578899999999999999876 3557888999988888899999999999998841 111 1 235689999999
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCH
Q 003829 719 AADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTK 778 (793)
Q Consensus 719 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 778 (793)
.+.+++++|+..+++.+.. .+.+..++.+++..|...|+++.|++.|.+++-+.|++..
T Consensus 466 Rkl~~~~eAI~~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~ 524 (611)
T KOG1173|consen 466 RKLNKYEEAIDYYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIF 524 (611)
T ss_pred HHHhhHHHHHHHHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHH
Confidence 9999999999999999985 3557999999999999999999999999999999998743
No 38
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=4.1e-11 Score=115.76 Aligned_cols=382 Identities=14% Similarity=0.061 Sum_probs=264.3
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH-
Q 003829 379 GITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTW- 457 (793)
Q Consensus 379 g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~- 457 (793)
+...|...+-...-.+.+.|....|+..|.+.+.. .+-.-..|..|.... .+.+.+..+ ... ...|....
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~-~P~~W~AWleL~~li---t~~e~~~~l----~~~-l~~~~h~M~ 229 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR-YPWFWSAWLELSELI---TDIEILSIL----VVG-LPSDMHWMK 229 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc-CCcchHHHHHHHHhh---chHHHHHHH----Hhc-CcccchHHH
Confidence 34455555554555566788889999988887764 233334444443332 222222221 111 11111111
Q ss_pred -HHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHH
Q 003829 458 -NTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVT--PDLSTYNAVLAAL 534 (793)
Q Consensus 458 -~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~ 534 (793)
-.+..++......+++.+-.+.....|++.+...-+....+.....++++|..+|+++.+.++- -|..+|..++-.
T Consensus 230 ~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv- 308 (559)
T KOG1155|consen 230 KFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYV- 308 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHH-
Confidence 1233556666678888888888888888766666666666777888999999999999987432 256677666633
Q ss_pred HhcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCC-CHHHHHHHHHHH
Q 003829 535 ARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSERAFLELKKKGFSP-DIPTLNAMISIY 613 (793)
Q Consensus 535 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~ 613 (793)
+..+. .+.++.+-.-.-.+-.+.|...+.+-|+-.++.++|+.+|+..+. +.| ....|+.++.-|
T Consensus 309 -~~~~s--kLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALk-----------LNp~~~~aWTLmGHEy 374 (559)
T KOG1155|consen 309 -KNDKS--KLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALK-----------LNPKYLSAWTLMGHEY 374 (559)
T ss_pred -HhhhH--HHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHh-----------cCcchhHHHHHhhHHH
Confidence 32221 122222211110133456667777888888899999999886543 344 356788888999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 003829 614 GRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEAS 693 (793)
Q Consensus 614 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 693 (793)
....+...|.+.++..++.+ |-|...|-.|..+|.-.+...=|+-+|++..+.. +.|...|.+|+.+|.+.++.++|.
T Consensus 375 vEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAi 452 (559)
T KOG1155|consen 375 VEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAI 452 (559)
T ss_pred HHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHH
Confidence 99999999999999999886 7788999999999999999999999999999862 446889999999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH----cCCCCC--HHHHHHHHHHHHccCCHHHHHHHHH
Q 003829 694 RIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIK----QGCKPN--QNTYNSIVDGYCKLNQRYEAITFVN 767 (793)
Q Consensus 694 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~ 767 (793)
+.|.++...|-. +...|..|+..|-+.++.++|...+++.++ .|...+ .....-|+.-+.+.+++++|..+..
T Consensus 453 KCykrai~~~dt-e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~ 531 (559)
T KOG1155|consen 453 KCYKRAILLGDT-EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYAT 531 (559)
T ss_pred HHHHHHHhcccc-chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHH
Confidence 999999986544 568899999999999999999999998876 232222 3333446777889999999999888
Q ss_pred HHhhCCCCCCHHHHHHHHHHHh
Q 003829 768 NLSKLDPHVTKELECKLSDRIA 789 (793)
Q Consensus 768 ~~~~~~~~~~~~~~~~l~~~l~ 789 (793)
.+..-+++ -..-..|+..++
T Consensus 532 ~~~~~~~e--~eeak~LlReir 551 (559)
T KOG1155|consen 532 LVLKGETE--CEEAKALLREIR 551 (559)
T ss_pred HHhcCCch--HHHHHHHHHHHH
Confidence 88877443 223334444443
No 39
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.64 E-value=1.3e-12 Score=126.81 Aligned_cols=403 Identities=13% Similarity=0.065 Sum_probs=232.8
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhcC
Q 003829 286 ISCCRRGSLHEEAAGVFEEMKLAGFSPD-KVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSI-VTYNSLISAYARDG 363 (793)
Q Consensus 286 ~~~~~~~~~~~~A~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g 363 (793)
..-|.+.|.+++|++++.+.+.. .|| .+.|.....+|...|+++++.+.-.+.++ +.|+- ..+..-..++-..|
T Consensus 122 GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALE--l~P~Y~KAl~RRA~A~E~lg 197 (606)
T KOG0547|consen 122 GNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALE--LNPDYVKALLRRASAHEQLG 197 (606)
T ss_pred hhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhh--cCcHHHHHHHHHHHHHHhhc
Confidence 34488899999999999999987 567 77888899999999999999988888876 44543 36666777888888
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-CC--CCCCHHHHHHHHHHHHhc--------
Q 003829 364 LLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRS-AG--CKPNICTFNALIKMHGNR-------- 432 (793)
Q Consensus 364 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-~~--~~~~~~~~~~l~~~~~~~-------- 432 (793)
++++|+.=..-.--.|.-.|..+- .++.-..+ ..|+...++-.+ .+ +-|......+....+-..
T Consensus 198 ~~~eal~D~tv~ci~~~F~n~s~~-~~~eR~Lk----k~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~ 272 (606)
T KOG0547|consen 198 KFDEALFDVTVLCILEGFQNASIE-PMAERVLK----KQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNK 272 (606)
T ss_pred cHHHHHHhhhHHHHhhhcccchhH-HHHHHHHH----HHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCC
Confidence 888886433222111111111111 11111111 122223332222 12 224444333333332110
Q ss_pred CC-----HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHc---CCCCC---------HHHHHHH
Q 003829 433 GN-----FVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRA---GFIPE---------RDTFNTL 495 (793)
Q Consensus 433 g~-----~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---~~~~~---------~~~~~~l 495 (793)
++ ..++.+.+..-. ...+.++...+.+-... ....+ ..+...-
T Consensus 273 ~~ksDa~l~~~l~~l~~~~--------------------~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~ 332 (606)
T KOG0547|consen 273 SDKSDAALAEALEALEKGL--------------------EEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLR 332 (606)
T ss_pred CccchhhHHHHHHHHHhhC--------------------chhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHh
Confidence 00 111111111111 11233333333221110 00001 1122222
Q ss_pred HHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHcCCCH
Q 003829 496 ISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREI 575 (793)
Q Consensus 496 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 575 (793)
...+.-.|+.-.|.+-|+..++.... +...|-.+..+|....+.++-...|++..+.+ +-++.+|..=.+.+.-.+++
T Consensus 333 gtF~fL~g~~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~ 410 (606)
T KOG0547|consen 333 GTFHFLKGDSLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQY 410 (606)
T ss_pred hhhhhhcCCchhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHH
Confidence 22344567778888888888877554 23336666667888888888888888877653 33566666666666666677
Q ss_pred HHHHHHHHHHHhHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCH
Q 003829 576 DQMLALSEEIYSERAFLELKKKGFSP-DIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENF 654 (793)
Q Consensus 576 ~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 654 (793)
++|+.-|++..+ +.| +...|.-+..+..+.++++++...|++.++. +|..+.+|+.....+...+++
T Consensus 411 e~A~aDF~Kai~-----------L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqF 478 (606)
T KOG0547|consen 411 EEAIADFQKAIS-----------LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQF 478 (606)
T ss_pred HHHHHHHHHHhh-----------cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhH
Confidence 777766655332 233 3455666666666777778888888777765 566777777777777777788
Q ss_pred HHHHHHHHHHHHCCCCCC-------H--HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCh
Q 003829 655 ARAEDVLREILAKGIKPD-------I--ISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPD-VITYNTFVASYAADSLF 724 (793)
Q Consensus 655 ~~A~~~~~~~~~~~~~~~-------~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~ 724 (793)
++|.+.|+..+.. .|+ . .+...++- +-..+++..|..++.++++ +.|. ...|..|+..-.+.|+.
T Consensus 479 d~A~k~YD~ai~L--E~~~~~~~v~~~plV~Ka~l~-~qwk~d~~~a~~Ll~KA~e--~Dpkce~A~~tlaq~~lQ~~~i 553 (606)
T KOG0547|consen 479 DKAVKQYDKAIEL--EPREHLIIVNAAPLVHKALLV-LQWKEDINQAENLLRKAIE--LDPKCEQAYETLAQFELQRGKI 553 (606)
T ss_pred HHHHHHHHHHHhh--ccccccccccchhhhhhhHhh-hchhhhHHHHHHHHHHHHc--cCchHHHHHHHHHHHHHHHhhH
Confidence 8888888777764 222 1 11112221 1233777777777777777 4443 36677777777777777
Q ss_pred HHHHHHHHHHHH
Q 003829 725 VEALDVVRYMIK 736 (793)
Q Consensus 725 ~~A~~~~~~~~~ 736 (793)
++|+++|++...
T Consensus 554 ~eAielFEksa~ 565 (606)
T KOG0547|consen 554 DEAIELFEKSAQ 565 (606)
T ss_pred HHHHHHHHHHHH
Confidence 777777777654
No 40
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=5.4e-12 Score=121.75 Aligned_cols=332 Identities=15% Similarity=0.116 Sum_probs=242.3
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHH--H
Q 003829 414 GCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERD--T 491 (793)
Q Consensus 414 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~--~ 491 (793)
+...|...+-.....+.+.|..+.|+..|...... -+..|.+.+....-..+.+.+ ..... +...|.. .
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~----~P~~W~AWleL~~lit~~e~~----~~l~~-~l~~~~h~M~ 229 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR----YPWFWSAWLELSELITDIEIL----SILVV-GLPSDMHWMK 229 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc----CCcchHHHHHHHHhhchHHHH----HHHHh-cCcccchHHH
Confidence 44556666666666777889999999999888754 233333333222222222222 11221 1221222 1
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCC-C-CCHhhHHHHHHHH
Q 003829 492 FNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRC-K-PNELTYSSLLHAY 569 (793)
Q Consensus 492 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~-p~~~~~~~l~~~~ 569 (793)
-..+..++-.....+++.+-.+.....|+.-+...-+....+.....++++|+.+|+++.+.+. . .|..+|..++-.-
T Consensus 230 ~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~ 309 (559)
T KOG1155|consen 230 KFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVK 309 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHH
Confidence 1234455666668888998888888888876666666666677788999999999999997621 1 1556666655332
Q ss_pred HcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 003829 570 ANGREIDQMLALSEEIYSERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYS 649 (793)
Q Consensus 570 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 649 (793)
....++. -+.+.+. .--+-...|...+.+.|+-.++.++|..+|++..+.+ +.....|+.+.+-|.
T Consensus 310 ~~~skLs---~LA~~v~----------~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyv 375 (559)
T KOG1155|consen 310 NDKSKLS---YLAQNVS----------NIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYV 375 (559)
T ss_pred hhhHHHH---HHHHHHH----------HhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHH
Confidence 2111111 1111111 1112345577788888999999999999999999986 556677999999999
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHH
Q 003829 650 RSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSLFVEAL 728 (793)
Q Consensus 650 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~ 728 (793)
...+...|++-++.+++-. +-|-..|..++.+|.-.+...-|+-+|+++.+ ++| |...|.+|+.+|.+.++.++|+
T Consensus 376 EmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAi 452 (559)
T KOG1155|consen 376 EMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAI 452 (559)
T ss_pred HhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHH
Confidence 9999999999999999874 55889999999999999999999999999999 555 7799999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhC
Q 003829 729 DVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKL 772 (793)
Q Consensus 729 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 772 (793)
+.|+.++..| ..+...+..|+..|-+.++.++|..++++.++.
T Consensus 453 KCykrai~~~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~~ 495 (559)
T KOG1155|consen 453 KCYKRAILLG-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEV 495 (559)
T ss_pred HHHHHHHhcc-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 9999999865 335688999999999999999999999998874
No 41
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.62 E-value=2e-12 Score=134.22 Aligned_cols=289 Identities=12% Similarity=0.099 Sum_probs=148.7
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHH--HHHHHHHhccCCHHHH
Q 003829 432 RGNFVEMMKVFDEINKCNCKPDIVT-WNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTF--NTLISAYSRCGSFDQA 508 (793)
Q Consensus 432 ~g~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~--~~l~~~~~~~g~~~~a 508 (793)
.|+++.|.+.+....+.. +.+.. |.....+..+.|+++.+.+.+.++.+.. |+.... ......+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~--~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAELA--DNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHCCCHHHH
Confidence 466666665555543321 11222 2222334456666666666666666542 333222 2335566777777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHhhHHHHH-HHHHcCCCHHHHHHHHHHHHh
Q 003829 509 MSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLL-HAYANGREIDQMLALSEEIYS 587 (793)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~ 587 (793)
.+.++.+.+..+. +......+...|.+.|++++|.+++..+.+.+.. +......+- .+
T Consensus 173 l~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~-~~~~~~~l~~~a------------------- 231 (398)
T PRK10747 173 RHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVG-DEEHRAMLEQQA------------------- 231 (398)
T ss_pred HHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHH-------------------
Confidence 7777777776654 6667777777777778888888888777765432 111111100 00
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 003829 588 ERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAK 667 (793)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 667 (793)
|..++.......+.+...++++.+.+. .+.++.....+...+...|+.++|.+++++..+.
T Consensus 232 ------------------~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~ 292 (398)
T PRK10747 232 ------------------WIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR 292 (398)
T ss_pred ------------------HHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 001111111111222333333333221 1334555555555566666666666666555553
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH
Q 003829 668 GIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTY 746 (793)
Q Consensus 668 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 746 (793)
.++.... ++.+....++.+++.+.++...+. .| |...+..++..+.+.|++++|.+.|+++.+ ..|+...+
T Consensus 293 --~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~--~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~--~~P~~~~~ 364 (398)
T PRK10747 293 --QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQ--HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALK--QRPDAYDY 364 (398)
T ss_pred --CCCHHHH--HHHhhccCCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHH
Confidence 3333211 222223345566666666655552 23 334455566666666666666666666655 34555555
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHhhC
Q 003829 747 NSIVDGYCKLNQRYEAITFVNNLSKL 772 (793)
Q Consensus 747 ~~l~~~~~~~g~~~~A~~~~~~~~~~ 772 (793)
..+...+.+.|+.++|..++++.+.+
T Consensus 365 ~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 365 AWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 55666666666666666666665543
No 42
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.62 E-value=2.6e-13 Score=137.29 Aligned_cols=269 Identities=12% Similarity=0.084 Sum_probs=178.4
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCChHHHHHH-HHHHhcCCCCCCHhhHHHHH
Q 003829 490 DTFNTLISAYSRCGSFDQAMSIYKRMLEAGV--TPDLSTYNAVLAALARGGMWEQSEKI-FAEMKGGRCKPNELTYSSLL 566 (793)
Q Consensus 490 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~p~~~~~~~l~ 566 (793)
.....+..+|...+++++|.++|+.+.+... .-+.+.|.+.+..+-+ +-++.. -+++.+. .+..+.+|-++.
T Consensus 354 wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~Laq~Li~~-~~~sPesWca~G 428 (638)
T KOG1126|consen 354 WVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSYLAQDLIDT-DPNSPESWCALG 428 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHHHHHHHHhh-CCCCcHHHHHhc
Confidence 3444455555555666666666665554421 1144555555443322 112222 2223332 134666777777
Q ss_pred HHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003829 567 HAYANGREIDQMLALSEEIYSERAFLELKKKGFSP-DIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLM 645 (793)
Q Consensus 567 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 645 (793)
.+|.-+++.+.|++.|++.+. +.| ...+|+.+..-+.....+|+|...|+..+... +-+...|-.+.
T Consensus 429 NcfSLQkdh~~Aik~f~RAiQ-----------ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~-~rhYnAwYGlG 496 (638)
T KOG1126|consen 429 NCFSLQKDHDTAIKCFKRAIQ-----------LDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD-PRHYNAWYGLG 496 (638)
T ss_pred chhhhhhHHHHHHHHHHHhhc-----------cCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-chhhHHHHhhh
Confidence 777777777777777665432 344 45666666666677777888888888776542 22334455667
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 003829 646 YMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFV 725 (793)
Q Consensus 646 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 725 (793)
-.|.+.++++.|+-.|+++.+.+ +-+.+....++..+.+.|+.++|+.+++++...+.. |+..-...+..+...++++
T Consensus 497 ~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~~il~~~~~~~ 574 (638)
T KOG1126|consen 497 TVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHRASILFSLGRYV 574 (638)
T ss_pred hheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHHHHHHHhhcchH
Confidence 77888888888888888888753 335666777777888888888888888888874333 4555556667778888888
Q ss_pred HHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHH
Q 003829 726 EALDVVRYMIKQGCKPN-QNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKE 779 (793)
Q Consensus 726 ~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 779 (793)
+|+..++++++ +.|+ ...+..++..|.+.|+.+.|+.-+--|..++|....+
T Consensus 575 eal~~LEeLk~--~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~i 627 (638)
T KOG1126|consen 575 EALQELEELKE--LVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQI 627 (638)
T ss_pred HHHHHHHHHHH--hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccchh
Confidence 88888888887 4565 6777888888888888888888888888888876663
No 43
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.62 E-value=4e-09 Score=106.36 Aligned_cols=550 Identities=11% Similarity=0.105 Sum_probs=301.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003829 174 SVIAVLISMLGKEGKVSVAASLLHGLHKD-GFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNV 252 (793)
Q Consensus 174 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~ 252 (793)
..|......+.++|++......|+..+.. .......+|...+......|-++-++.+|++.++. ++..-+--+..
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~ 178 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEY 178 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHH
Confidence 45666666677777777777777765443 22233456666666666667777777777777654 23335555666
Q ss_pred HHhcCCCHHHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHcCCCHH---HHHHHHHHHHHCCCCCC--HHHHHHHH
Q 003829 253 YGKMGMPWNKIMALVEGMKSAG------VKPDSYTFNTLISCCRRGSLHE---EAAGVFEEMKLAGFSPD--KVTYNALL 321 (793)
Q Consensus 253 ~~~~g~~~~~a~~~~~~~~~~~------~~p~~~~~~~l~~~~~~~~~~~---~A~~~~~~~~~~g~~~~--~~~~~~li 321 (793)
+++.+ ++++|.+.+...+... -+.+...|..+-....+.-+.- ....++..+... -+| ...|.+|.
T Consensus 179 L~~~d-~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLA 255 (835)
T KOG2047|consen 179 LAKSD-RLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLA 255 (835)
T ss_pred HHhcc-chHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHH
Confidence 66666 6777766666654321 1234445555555554433322 222333333332 223 23566777
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC----------------------CHHHHHHHHHHHHHcC
Q 003829 322 DVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDG----------------------LLEEAMELKTQMVEIG 379 (793)
Q Consensus 322 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----------------------~~~~A~~~~~~m~~~g 379 (793)
+-|.+.|.+++|..+|++....- ..+.-|+.+-..|++-. +++-...-|+.+...+
T Consensus 256 dYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr 333 (835)
T KOG2047|consen 256 DYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRR 333 (835)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhcc
Confidence 77777777777777777665431 12223333333333211 1222333333333321
Q ss_pred -----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHhcCCHHHHHHHH
Q 003829 380 -----------ITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPN------ICTFNALIKMHGNRGNFVEMMKVF 442 (793)
Q Consensus 380 -----------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~ 442 (793)
-+-++..+..-+. +..|+..+-...+.+++.. +.|. ...|..+.+.|-..|+++.|..+|
T Consensus 334 ~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvif 410 (835)
T KOG2047|consen 334 PLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIF 410 (835)
T ss_pred chHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHH
Confidence 0112223322222 2356677777777777654 2222 346778888888888888888888
Q ss_pred HHHHhCCCCCC---HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 003829 443 DEINKCNCKPD---IVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAG 519 (793)
Q Consensus 443 ~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 519 (793)
++..+...+.- ..+|......-.++.+++.|.++.+.... .|.... ..+...+..-++. +.
T Consensus 411 eka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~---vP~~~~-----~~~yd~~~pvQ~r-----lh--- 474 (835)
T KOG2047|consen 411 EKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATH---VPTNPE-----LEYYDNSEPVQAR-----LH--- 474 (835)
T ss_pred HHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhc---CCCchh-----hhhhcCCCcHHHH-----HH---
Confidence 88776543322 34555555555666777777776655543 222211 1222233222111 11
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCC
Q 003829 520 VTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSERAFLELKKKGF 599 (793)
Q Consensus 520 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 599 (793)
-+...|..+++..-..|-++....+++.+++..+- ++.........+....-++++.+.|++-++ .--
T Consensus 475 --rSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~---------LFk 542 (835)
T KOG2047|consen 475 --RSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGIS---------LFK 542 (835)
T ss_pred --HhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCc---------cCC
Confidence 15566777777777777788888888887765432 222211122223344455666666653221 000
Q ss_pred CCCH-HHHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCCHHHHHHH--HHHHHccCCHHHHHHHHHHHHHCCCCCC-
Q 003829 600 SPDI-PTLNAMISIYGR---RQMVAKTNEILHFMNDSGFTPSLTTYNTL--MYMYSRSENFARAEDVLREILAKGIKPD- 672 (793)
Q Consensus 600 ~~~~-~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~g~~~~A~~~~~~~~~~~~~~~- 672 (793)
.|++ ..|+..+.-+.+ ....+.|..+|++.++ |.+|...-+--| ...-.+.|-...|+.+++++... +++.
T Consensus 543 ~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~ 620 (835)
T KOG2047|consen 543 WPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQ 620 (835)
T ss_pred CccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHH
Confidence 1232 244544443322 2367888888888887 555543332222 22234567778888888887764 3433
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--CHHHH
Q 003829 673 -IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVI---TYNTFVASYAADSLFVEALDVVRYMIKQGCKP--NQNTY 746 (793)
Q Consensus 673 -~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~ 746 (793)
...||..|.-....--....+.+|+++++ .-||.. .....+..-++.|.++.|..+|.-..+. +.| +...|
T Consensus 621 ~l~myni~I~kaae~yGv~~TR~iYekaIe--~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~-~dPr~~~~fW 697 (835)
T KOG2047|consen 621 RLDMYNIYIKKAAEIYGVPRTREIYEKAIE--SLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQI-CDPRVTTEFW 697 (835)
T ss_pred HHHHHHHHHHHHHHHhCCcccHHHHHHHHH--hCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhc-CCCcCChHHH
Confidence 34667666555444445666778888887 455553 3345555666778888888888777654 455 35566
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHhhC
Q 003829 747 NSIVDGYCKLNQRYEAITFVNNLSKL 772 (793)
Q Consensus 747 ~~l~~~~~~~g~~~~A~~~~~~~~~~ 772 (793)
...-..=.+.|+ .+.+++|++.
T Consensus 698 ~twk~FEvrHGn----edT~keMLRi 719 (835)
T KOG2047|consen 698 DTWKEFEVRHGN----EDTYKEMLRI 719 (835)
T ss_pred HHHHHHHHhcCC----HHHHHHHHHH
Confidence 666666667777 3344444443
No 44
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.61 E-value=2.8e-10 Score=117.28 Aligned_cols=518 Identities=12% Similarity=0.047 Sum_probs=303.1
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH---HhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHH
Q 003829 221 NGRYREAVMVFKKMEEEGCKPTLITYNVILNVY---GKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEE 297 (793)
Q Consensus 221 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~---~~~g~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 297 (793)
.+..++++.-+......+...+..++..+-.++ ...+ +.+++ .++..+.+ .+....+.++
T Consensus 240 ~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~-~~Ee~-~Lllli~e---------------s~i~Re~~~d 302 (799)
T KOG4162|consen 240 LSGPKEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKS-GQEEV-ILLLLIEE---------------SLIPRENIED 302 (799)
T ss_pred CCCchHHHHhhhHHhhcccccchhHHHHHhhcccccCCCC-cHHHH-HHHHHHHh---------------hccccccHHH
Confidence 345566666666666665555555555544332 2223 23333 22221111 1222233333
Q ss_pred HHHH----HHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHH
Q 003829 298 AAGV----FEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKT 373 (793)
Q Consensus 298 A~~~----~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 373 (793)
+.-. +.++....+..|...|..|.-+...+|+++.+-+.|++.... ..-....|+.+...|...|.-..|..+++
T Consensus 303 ~ilslm~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~-~~~~~e~w~~~als~saag~~s~Av~ll~ 381 (799)
T KOG4162|consen 303 AILSLMLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPF-SFGEHERWYQLALSYSAAGSDSKAVNLLR 381 (799)
T ss_pred HHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh-hhhhHHHHHHHHHHHHHhccchHHHHHHH
Confidence 3322 222333334567888888888888889999999999887553 33456688888888888898888888888
Q ss_pred HHHHcCCCCC-HHHHHHHHHHHH-HcCCHHHHHHHHHHHHHC--CC--CCCHHHHHHHHHHHHhc-----------CCHH
Q 003829 374 QMVEIGITPD-VFTYTTLLSGFE-KAGKDESAMKVFEEMRSA--GC--KPNICTFNALIKMHGNR-----------GNFV 436 (793)
Q Consensus 374 ~m~~~g~~~~-~~~~~~li~~~~-~~g~~~~a~~~~~~~~~~--~~--~~~~~~~~~l~~~~~~~-----------g~~~ 436 (793)
.-....-.|+ ...+...-..|. +.+.+++++.+-.+++.. +. ......|..+.-+|... ....
T Consensus 382 ~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~ 461 (799)
T KOG4162|consen 382 ESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHK 461 (799)
T ss_pred hhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHH
Confidence 7665432343 333333334444 457777777776666651 11 12234444444444321 1234
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 003829 437 EMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRML 516 (793)
Q Consensus 437 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 516 (793)
++++.+++..+.+. -|+...-.+.--|...++.+.|.+..++..+.+...+...+..|.-.+...+++.+|+.+.+...
T Consensus 462 kslqale~av~~d~-~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al 540 (799)
T KOG4162|consen 462 KSLQALEEAVQFDP-TDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAAL 540 (799)
T ss_pred HHHHHHHHHHhcCC-CCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 56666776665542 23333333334456667777777777777776555567777777777777777777777777765
Q ss_pred HC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHH
Q 003829 517 EA-GVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSERAFLELK 595 (793)
Q Consensus 517 ~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 595 (793)
+. |. |......-+..-..-|+.+++......+...- -+..... ..++-....++...+ .+.
T Consensus 541 ~E~~~--N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~w--e~~~~~q-------~~~~~g~~~~lk~~l-------~la 602 (799)
T KOG4162|consen 541 EEFGD--NHVLMDGKIHIELTFNDREEALDTCIHKLALW--EAEYGVQ-------QTLDEGKLLRLKAGL-------HLA 602 (799)
T ss_pred HHhhh--hhhhchhhhhhhhhcccHHHHHHHHHHHHHHH--HhhhhHh-------hhhhhhhhhhhhccc-------ccC
Confidence 53 11 11111111222233566666666665554310 0000000 000000000000000 000
Q ss_pred HCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCC------HHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 003829 596 KKGFSPDIPTLNAMISIYGRRQ---MVAKTNEILHFMNDSGFTPS------LTTYNTLMYMYSRSENFARAEDVLREILA 666 (793)
Q Consensus 596 ~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 666 (793)
.........++..+.......+ ..+.. +...... ..|+ ...|......+.+.++.++|...+.+..+
T Consensus 603 ~~q~~~a~s~sr~ls~l~a~~~~~~~se~~---Lp~s~~~-~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~ 678 (799)
T KOG4162|consen 603 LSQPTDAISTSRYLSSLVASQLKSAGSELK---LPSSTVL-PGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK 678 (799)
T ss_pred cccccccchhhHHHHHHHHhhhhhcccccc---cCccccc-CCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh
Confidence 0000111222322222211111 11111 1111110 0122 23456677788899999999999999987
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChHHHHH--HHHHHHHcCCCC-C
Q 003829 667 KGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDV-ITYNTFVASYAADSLFVEALD--VVRYMIKQGCKP-N 742 (793)
Q Consensus 667 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~~~p-~ 742 (793)
. .+-....|...+..+...|.+++|.+.|...+. +.|+. .....++.++.+.|+..-|.. ++..+++. .| +
T Consensus 679 ~-~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~--ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~--dp~n 753 (799)
T KOG4162|consen 679 I-DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALA--LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRL--DPLN 753 (799)
T ss_pred c-chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh--cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhh--CCCC
Confidence 6 344567788888889999999999999999998 77765 778999999999998777777 99999985 45 5
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 003829 743 QNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKELECKL 784 (793)
Q Consensus 743 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 784 (793)
...|..++..+.+.|+.++|.+-|..+.++++.++..-|..+
T Consensus 754 ~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV~pFs~i 795 (799)
T KOG4162|consen 754 HEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPVLPFSNI 795 (799)
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCccccccc
Confidence 899999999999999999999999999999988887665543
No 45
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.60 E-value=4.3e-12 Score=132.62 Aligned_cols=295 Identities=11% Similarity=0.059 Sum_probs=183.4
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHH
Q 003829 430 GNRGNFVEMMKVFDEINKCNCKPDI-VTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQA 508 (793)
Q Consensus 430 ~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a 508 (793)
...|+++.|.+.+.+..+. .|+. ..+-....++.+.|+++.+.+.+.+..+....+...........+...|+++.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 3567777777777666554 2332 233334456666677777777777766543222222333345666667777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhH
Q 003829 509 MSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSE 588 (793)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 588 (793)
.+.++.+.+..+. +...+..+...+...|++++|.+++..+.+.+.. +...+..+-.
T Consensus 173 l~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~--------------------- 229 (409)
T TIGR00540 173 RHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQ--------------------- 229 (409)
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHH---------------------
Confidence 7777777766544 5556666666777777777777777776655321 2221111110
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 003829 589 RAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSG---FTPSLTTYNTLMYMYSRSENFARAEDVLREIL 665 (793)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 665 (793)
..+..+ ...+..+++.+.+..+.+.. .+.+...+..++..+...|+.++|.+++++..
T Consensus 230 ---------------~a~~~~----l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l 290 (409)
T TIGR00540 230 ---------------KAEIGL----LDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGL 290 (409)
T ss_pred ---------------HHHHHH----HHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 000000 11111222223333333321 12477888888889999999999999999999
Q ss_pred HCCCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CH--HHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 003829 666 AKGIKPDIIS---YNTVIFAYCRNGRMKEASRIFSEMRDSGLVP-DV--ITYNTFVASYAADSLFVEALDVVRYMIKQGC 739 (793)
Q Consensus 666 ~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 739 (793)
+.. ||... ...........++.+.+.+.+++..+ ..| |. .....+++.+.+.|++++|.+.|++......
T Consensus 291 ~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk--~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~ 366 (409)
T TIGR00540 291 KKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAK--NVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKE 366 (409)
T ss_pred hhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHH--hCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhc
Confidence 863 33321 12222233445778889999988887 344 34 5667899999999999999999995333335
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhC
Q 003829 740 KPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKL 772 (793)
Q Consensus 740 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 772 (793)
.|+...+..++..+.+.|+.++|.+++++.+..
T Consensus 367 ~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 367 QLDANDLAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 788888889999999999999999999987654
No 46
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.59 E-value=9.3e-15 Score=145.04 Aligned_cols=261 Identities=16% Similarity=0.200 Sum_probs=94.5
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHcCC
Q 003829 495 LISAYSRCGSFDQAMSIYKRMLEAG-VTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGR 573 (793)
Q Consensus 495 l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 573 (793)
+...+.+.|++++|+++++...... ...+...|..+.......++.+.|...++++...+ +-+...+..++.. ...+
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-cccc
Confidence 3555556666666666664433332 12233444444445555666666666666665543 1134444444444 4566
Q ss_pred CHHHHHHHHHHHHhHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHccC
Q 003829 574 EIDQMLALSEEIYSERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSG-FTPSLTTYNTLMYMYSRSE 652 (793)
Q Consensus 574 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g 652 (793)
++++|..+++.... ..++...+...+..+.+.++++++.++++.+.+.. .+.+...|..+...+.+.|
T Consensus 92 ~~~~A~~~~~~~~~-----------~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G 160 (280)
T PF13429_consen 92 DPEEALKLAEKAYE-----------RDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLG 160 (280)
T ss_dssp -------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCC
T ss_pred cccccccccccccc-----------cccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcC
Confidence 66666666543221 12334445556666667777777777777765432 2456677777777788888
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 003829 653 NFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVR 732 (793)
Q Consensus 653 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 732 (793)
+.++|+..++++++.. +.|......+++.+...|+.+++.++++...+.. ..|...+..++.+|...|++++|+.+++
T Consensus 161 ~~~~A~~~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~ 238 (280)
T PF13429_consen 161 DPDKALRDYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLE 238 (280)
T ss_dssp HHHHHHHHHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccc
Confidence 8888888888888752 2246677777888888888888777777776642 2244556777888888888888888888
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhh
Q 003829 733 YMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSK 771 (793)
Q Consensus 733 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 771 (793)
+..+.+ +.|......+++++...|+.++|..+.+++.+
T Consensus 239 ~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 239 KALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHS-TT-HHHHHHHHHHHT-----------------
T ss_pred cccccc-cccccccccccccccccccccccccccccccc
Confidence 877642 33677777888888888888888888777654
No 47
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.59 E-value=4.7e-09 Score=105.86 Aligned_cols=485 Identities=11% Similarity=0.102 Sum_probs=263.1
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 003829 280 YTFNTLISCCRRGSLHEEAAGVFEEMKLA-GFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISA 358 (793)
Q Consensus 280 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 358 (793)
..|...+....++|++...+..|+..+.. .+.-....|...+......|-++-+..++++.++- ++..-...|..
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~ 178 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEY 178 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHH
Confidence 34555555566667777777777766554 12222345666666666666777777777777542 33445566666
Q ss_pred HHhcCCHHHHHHHHHHHHHcC------CCCCHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHCCCCCC--HHHHHHHHH
Q 003829 359 YARDGLLEEAMELKTQMVEIG------ITPDVFTYTTLLSGFEKAGKDES---AMKVFEEMRSAGCKPN--ICTFNALIK 427 (793)
Q Consensus 359 ~~~~g~~~~A~~~~~~m~~~g------~~~~~~~~~~li~~~~~~g~~~~---a~~~~~~~~~~~~~~~--~~~~~~l~~ 427 (793)
+++.+++++|.+.+...+... .+.+...|..+-...++.-+.-. ...++..+..+ -+| ...|++|.+
T Consensus 179 L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAd 256 (835)
T KOG2047|consen 179 LAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLAD 256 (835)
T ss_pred HHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHH
Confidence 777777777777776665321 23333444444444444332222 22333333322 123 345677777
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC----------------CC------hHHHHHHHHHHHHcCC
Q 003829 428 MHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQN----------------GM------DSEVSGVFKEMKRAGF 485 (793)
Q Consensus 428 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------~~------~~~a~~~~~~m~~~~~ 485 (793)
-|.+.|+++.|..+|++.... ..+..-+..+..+|.+- ++ ++-...-|+.+.....
T Consensus 257 YYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~ 334 (835)
T KOG2047|consen 257 YYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRP 334 (835)
T ss_pred HHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccc
Confidence 777777777777777766543 12222222222222211 11 1122233333332211
Q ss_pred -----------CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHhcCChHHHHHHHH
Q 003829 486 -----------IPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTP------DLSTYNAVLAALARGGMWEQSEKIFA 548 (793)
Q Consensus 486 -----------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~ 548 (793)
+.++..+..-+. +..|+..+-...+.++++. +.| -...|..+...|...|+++.|..+|+
T Consensus 335 ~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvife 411 (835)
T KOG2047|consen 335 LLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFE 411 (835)
T ss_pred hHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHH
Confidence 112333332222 2346667777777777764 122 23567888888999999999999999
Q ss_pred HHhcCCCCCC---HhhHHHHHHHHHcCCCHHHHHHHHHHHHhHHHH--HHHHHCCCC------CCHHHHHHHHHHHHhcC
Q 003829 549 EMKGGRCKPN---ELTYSSLLHAYANGREIDQMLALSEEIYSERAF--LELKKKGFS------PDIPTLNAMISIYGRRQ 617 (793)
Q Consensus 549 ~~~~~~~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~------~~~~~~~~l~~~~~~~g 617 (793)
+..+...+-- ..+|..-...=.+..+++.|.++.+....-..- ...-+.+.+ .+...|...++..-..|
T Consensus 412 ka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~g 491 (835)
T KOG2047|consen 412 KATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLG 491 (835)
T ss_pred HhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhc
Confidence 9876532211 123333333334567788888877665420000 000011111 13345666666666778
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHc---CCHHHHH
Q 003829 618 MVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPD-IISYNTVIFAYCRN---GRMKEAS 693 (793)
Q Consensus 618 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~---g~~~~A~ 693 (793)
-++....+|+++.+..+. ++.........+..+.-++++.++|++-+..=-.|+ ...|+..+.-+.+. -..+.|+
T Consensus 492 tfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraR 570 (835)
T KOG2047|consen 492 TFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERAR 570 (835)
T ss_pred cHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 888888899998876543 334333334445556667888888887665522334 34677777665543 3678888
Q ss_pred HHHHHHHHCCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHH
Q 003829 694 RIFSEMRDSGLVPDV--ITYNTFVASYAADSLFVEALDVVRYMIKQGCKPN--QNTYNSIVDGYCKLNQRYEAITFVNNL 769 (793)
Q Consensus 694 ~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~ 769 (793)
.+|+++++ |..|.. ..|...+..--+.|-...|+.+++++... +++. ...|+.++..-...=-...-+++|+++
T Consensus 571 dLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yGv~~TR~iYeka 648 (835)
T KOG2047|consen 571 DLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKA 648 (835)
T ss_pred HHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHH
Confidence 88888888 555543 23333333344567777788888876542 3432 345555544322222223345566666
Q ss_pred hhCCCCCCH
Q 003829 770 SKLDPHVTK 778 (793)
Q Consensus 770 ~~~~~~~~~ 778 (793)
++.=|+...
T Consensus 649 Ie~Lp~~~~ 657 (835)
T KOG2047|consen 649 IESLPDSKA 657 (835)
T ss_pred HHhCChHHH
Confidence 665555443
No 48
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.59 E-value=1.1e-11 Score=128.72 Aligned_cols=283 Identities=11% Similarity=0.016 Sum_probs=197.9
Q ss_pred cCChHHHHHHHHHHhhCCCCCCHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHhcCCCHHH
Q 003829 186 EGKVSVAASLLHGLHKDGFDIDVYAYTSL-ITTYASNGRYREAVMVFKKMEEEGCKPTLITY--NVILNVYGKMGMPWNK 262 (793)
Q Consensus 186 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~--~~ll~~~~~~g~~~~~ 262 (793)
.|+++.|++.+....+... ++..+..+ .....+.|+++.|..+|.++.+. .|+.... ......+...| +++.
T Consensus 97 eGd~~~A~k~l~~~~~~~~--~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g-~~~~ 171 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAE--QPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARN-ENHA 171 (398)
T ss_pred CCCHHHHHHHHHHHHhccc--chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCC-CHHH
Confidence 6888888877776555421 22333333 34446788888888888888765 3443322 23356677777 7888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCChHHHHH
Q 003829 263 IMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDK-------VTYNALLDVYGKCRRPKEAMQ 335 (793)
Q Consensus 263 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~~~~-------~~~~~li~~~~~~g~~~~A~~ 335 (793)
|...++++.+.++. +......+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...+
T Consensus 172 Al~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~ 250 (398)
T PRK10747 172 ARHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKR 250 (398)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 88888888877644 5667777778888888888888888888877543222 233444444445556666667
Q ss_pred HHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 003829 336 VLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGC 415 (793)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 415 (793)
+++.+.+. .+.+......++..+...|+.++|.+++++..+. ++|... .++.+.+..++.+++.+..+...+..
T Consensus 251 ~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~- 324 (398)
T PRK10747 251 WWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQH- 324 (398)
T ss_pred HHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhC-
Confidence 76666443 3446777888888888888888888888888774 445422 22344445688888888888887763
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 003829 416 KPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKR 482 (793)
Q Consensus 416 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 482 (793)
+.|...+..+...+.+.+++++|.+.|+...+. .|+...+..+...+.+.|+.++|.+++++-..
T Consensus 325 P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 325 GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 346677888888888888888888888888875 68888888888888888888888888887654
No 49
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.59 E-value=5.3e-11 Score=110.79 Aligned_cols=449 Identities=11% Similarity=0.048 Sum_probs=197.4
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 003829 259 PWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLR 338 (793)
Q Consensus 259 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 338 (793)
++..|+.+++--...+-.-...+-.-+..++.+.|++++|...+..+.... .++...+..|..++.-.|.+.+|..+-.
T Consensus 37 DytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~~~~ 115 (557)
T KOG3785|consen 37 DYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKSIAE 115 (557)
T ss_pred cchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHHHHh
Confidence 456666666544432222111111222233445566666666665555432 3444444455555555555555555544
Q ss_pred HHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 003829 339 EMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPN 418 (793)
Q Consensus 339 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 418 (793)
.. +.+.-.-..|...--+.|+-++-..+-+.+... . .--.+|.......-.+.+|+++++.++.. .|+
T Consensus 116 ka-----~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~--~---EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n~e 183 (557)
T KOG3785|consen 116 KA-----PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT--L---EDQLSLASVHYMRMHYQEAIDVYKRVLQD--NPE 183 (557)
T ss_pred hC-----CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh--H---HHHHhHHHHHHHHHHHHHHHHHHHHHHhc--Chh
Confidence 32 223333333444444555555544444443321 0 11122333333334455666666665543 222
Q ss_pred HHHHHH-HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003829 419 ICTFNA-LIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLIS 497 (793)
Q Consensus 419 ~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~ 497 (793)
....|. +.-+|.+..-++-+.++++.....- +.++...|.......+.=.-..|.+-.+++.+.+-.. ...+.
T Consensus 184 y~alNVy~ALCyyKlDYydvsqevl~vYL~q~-pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~-----~~f~~ 257 (557)
T KOG3785|consen 184 YIALNVYMALCYYKLDYYDVSQEVLKVYLRQF-PDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE-----YPFIE 257 (557)
T ss_pred hhhhHHHHHHHHHhcchhhhHHHHHHHHHHhC-CCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc-----chhHH
Confidence 222222 2233445555555555555554431 2223334444433333222222333333333322111 11122
Q ss_pred HHhcc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHcC
Q 003829 498 AYSRC-----GSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANG 572 (793)
Q Consensus 498 ~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 572 (793)
-+++. ..-+.|++++-.+.+. -++....|+-.|.+.+++.+|..+.+++.-. .|-......+. +...
T Consensus 258 ~l~rHNLVvFrngEgALqVLP~L~~~----IPEARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilKgvv--~aal 329 (557)
T KOG3785|consen 258 YLCRHNLVVFRNGEGALQVLPSLMKH----IPEARLNLIIYYLNQNDVQEAISLCKDLDPT--TPYEYILKGVV--FAAL 329 (557)
T ss_pred HHHHcCeEEEeCCccHHHhchHHHhh----ChHhhhhheeeecccccHHHHHHHHhhcCCC--ChHHHHHHHHH--HHHh
Confidence 22222 2335566665555543 2334444555666777777777766665321 22222222222 2222
Q ss_pred CCH---HHHHHHHHHHHhHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003829 573 REI---DQMLALSEEIYSERAFLELKKKGFSPD-IPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMY 648 (793)
Q Consensus 573 ~~~---~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 648 (793)
|+- .+-+++.++ .|.-....+..-| +.--.++...+.-..++++++-++..+...-...|...+ .+..++
T Consensus 330 GQe~gSreHlKiAqq-----ffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk 403 (557)
T KOG3785|consen 330 GQETGSREHLKIAQQ-----FFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAK 403 (557)
T ss_pred hhhcCcHHHHHHHHH-----HHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHH
Confidence 211 111111111 1111222232222 122333444444455566666666666655333344433 355666
Q ss_pred HccCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCChHH
Q 003829 649 SRSENFARAEDVLREILAKGIKPDIISYN-TVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITY-NTFVASYAADSLFVE 726 (793)
Q Consensus 649 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~ 726 (793)
+..|++.+|+++|-.+....++ |..+|. .+..+|.++++.+-|..++-++-. ..+.... ...+.-|.+.+.+--
T Consensus 404 ~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyy 479 (557)
T KOG3785|consen 404 LATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYY 479 (557)
T ss_pred HHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHH
Confidence 6667777777766665544333 333443 344666666666666655543322 1123333 333345666666666
Q ss_pred HHHHHHHHHHcCCCCCHHHH
Q 003829 727 ALDVVRYMIKQGCKPNQNTY 746 (793)
Q Consensus 727 A~~~~~~~~~~~~~p~~~~~ 746 (793)
|.+.|..+.. +.|+++-|
T Consensus 480 aaKAFd~lE~--lDP~pEnW 497 (557)
T KOG3785|consen 480 AAKAFDELEI--LDPTPENW 497 (557)
T ss_pred HHHhhhHHHc--cCCCcccc
Confidence 6666666544 35555554
No 50
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.58 E-value=9.3e-12 Score=130.14 Aligned_cols=286 Identities=10% Similarity=-0.002 Sum_probs=173.5
Q ss_pred CHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 003829 259 PWNKIMALVEGMKSAGVKPD-SYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVL 337 (793)
Q Consensus 259 ~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 337 (793)
+++.|.+.+.+..+.. |+ ...+.....+..+.|+++.|.+++.+..+..-.++....-.....+...|+++.|...+
T Consensus 99 ~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l 176 (409)
T TIGR00540 99 DYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGV 176 (409)
T ss_pred CHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 6666666666655542 22 22233334455666777777777777665421111223333466667777777777777
Q ss_pred HHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH-HHHH---HHHHcCCHHHHHHHHHHHHHC
Q 003829 338 REMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYT-TLLS---GFEKAGKDESAMKVFEEMRSA 413 (793)
Q Consensus 338 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~-~li~---~~~~~g~~~~a~~~~~~~~~~ 413 (793)
+.+.+.. +-+...+..+...+.+.|++++|.+++..+.+.+... ...+. .-.. .....+..+++.+.+..+.+.
T Consensus 177 ~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~-~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~ 254 (409)
T TIGR00540 177 DKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFD-DEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKN 254 (409)
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 7777653 3355567777777777777777777777777765432 22221 1111 112223333333444444443
Q ss_pred CC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHhCCChHHHHHHHHHHHHcCCCC
Q 003829 414 GC---KPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVT---WNTLLAVFGQNGMDSEVSGVFKEMKRAGFIP 487 (793)
Q Consensus 414 ~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~ 487 (793)
.. +.+...+..++..+...|+.++|.+++++..+.. ||... ...........++.+.+.+.++...+....
T Consensus 255 ~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~- 331 (409)
T TIGR00540 255 QPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDD- 331 (409)
T ss_pred CCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCC-
Confidence 21 1366777777788888888888888888877753 33321 122222233456677777777777765322
Q ss_pred CH--HHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 003829 488 ER--DTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMK 551 (793)
Q Consensus 488 ~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 551 (793)
|. .....+...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++..
T Consensus 332 ~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 332 KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44 55667888888888888888888854443446777777788888888888888888887754
No 51
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.58 E-value=3.5e-10 Score=105.45 Aligned_cols=453 Identities=14% Similarity=0.093 Sum_probs=211.7
Q ss_pred HcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHH
Q 003829 290 RRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAM 369 (793)
Q Consensus 290 ~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 369 (793)
....++..|+.+++.-...+-.-...+-.-+..++...|++++|...+.-+.++ ..++...+..|..++.-.|.+.+|.
T Consensus 33 ls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~-~~~~~el~vnLAcc~FyLg~Y~eA~ 111 (557)
T KOG3785|consen 33 LSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK-DDAPAELGVNLACCKFYLGQYIEAK 111 (557)
T ss_pred HhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc-CCCCcccchhHHHHHHHHHHHHHHH
Confidence 334566666666655543332211112222344555666666666666665553 3445555555666666666666666
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 003829 370 ELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCN 449 (793)
Q Consensus 370 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 449 (793)
.+-.+..+ +......+.....+.|+-++-..+.+.+... ..--.+|..+....-.+.+|++++.++...
T Consensus 112 ~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d- 180 (557)
T KOG3785|consen 112 SIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQD- 180 (557)
T ss_pred HHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence 55443221 2222333344444556655555555554432 122233444444444566666666666554
Q ss_pred CCCCHHHHHHHH-HHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 003829 450 CKPDIVTWNTLL-AVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYN 528 (793)
Q Consensus 450 ~~~~~~~~~~l~-~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 528 (793)
.|.-...|..+ -.|.+..-++-+.++++-..+. ++.+....+..+....+.=.-..|.+-...+...+-. . .
T Consensus 181 -n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~-~----~ 253 (557)
T KOG3785|consen 181 -NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQ-E----Y 253 (557)
T ss_pred -ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccc-c----c
Confidence 23333333332 3345555566666666555544 2223333343333333322222233333333332111 0 1
Q ss_pred HHHHHHHhcC-----ChHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCCCH
Q 003829 529 AVLAALARGG-----MWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSERAFLELKKKGFSPDI 603 (793)
Q Consensus 529 ~l~~~~~~~g-----~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 603 (793)
..+..+++.+ .-+.|++++--+.+. -+..-..|+--|.+.+++++|..+.+++.....+..+. ..
T Consensus 254 ~f~~~l~rHNLVvFrngEgALqVLP~L~~~----IPEARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~Eyil------Kg 323 (557)
T KOG3785|consen 254 PFIEYLCRHNLVVFRNGEGALQVLPSLMKH----IPEARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYIL------KG 323 (557)
T ss_pred hhHHHHHHcCeEEEeCCccHHHhchHHHhh----ChHhhhhheeeecccccHHHHHHHHhhcCCCChHHHHH------HH
Confidence 1222223221 235566655554432 11222334444556666666666655432100000000 12
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003829 604 PTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTT-YNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFA 682 (793)
Q Consensus 604 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 682 (793)
.++..+.+-........-|...|+..-+.+..-|... -.++.+.+.-..++++.+.++..+... +..|...-..+..+
T Consensus 324 vv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~N~AQA 402 (557)
T KOG3785|consen 324 VVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY-FTNDDDFNLNLAQA 402 (557)
T ss_pred HHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhhhHHHHH
Confidence 3444555544444555556666655544432222211 223333444444566666666666554 22222222345566
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHH
Q 003829 683 YCRNGRMKEASRIFSEMRDSGLVPDVITY-NTFVASYAADSLFVEALDVVRYMIKQGCKPN-QNTYNSIVDGYCKLNQRY 760 (793)
Q Consensus 683 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~ 760 (793)
++..|++.+|.++|-++....++ |..+| ..|+++|.+.++.+-|.+++-++- -+.+ ......++..|.+.+.+=
T Consensus 403 k~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~---t~~e~fsLLqlIAn~CYk~~eFy 478 (557)
T KOG3785|consen 403 KLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTN---TPSERFSLLQLIANDCYKANEFY 478 (557)
T ss_pred HHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcC---CchhHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666555443333 33333 455556666666666655544432 1112 223344555666666666
Q ss_pred HHHHHHHHHhhCCCCC
Q 003829 761 EAITFVNNLSKLDPHV 776 (793)
Q Consensus 761 ~A~~~~~~~~~~~~~~ 776 (793)
-|.+.|..+...+|.+
T Consensus 479 yaaKAFd~lE~lDP~p 494 (557)
T KOG3785|consen 479 YAAKAFDELEILDPTP 494 (557)
T ss_pred HHHHhhhHHHccCCCc
Confidence 6666666666666654
No 52
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.58 E-value=1.1e-14 Score=144.46 Aligned_cols=263 Identities=16% Similarity=0.160 Sum_probs=112.9
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 003829 459 TLLAVFGQNGMDSEVSGVFKEMKRAG-FIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARG 537 (793)
Q Consensus 459 ~l~~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 537 (793)
.+...+.+.|++++|.+++++..... .+.+...+..+.......++++.|.+.++++...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 55788889999999999997655543 2334445555666777789999999999999987655 66677777777 688
Q ss_pred CChHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 003829 538 GMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSERAFLELKKKGFSPDIPTLNAMISIYGRRQ 617 (793)
Q Consensus 538 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 617 (793)
+++++|..++.+..+. .++...+..++..+...++++++..+++.+.. ....+.+...|..+...+.+.|
T Consensus 91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~--------~~~~~~~~~~~~~~a~~~~~~G 160 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEE--------LPAAPDSARFWLALAEIYEQLG 160 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH---------T---T-HHHHHHHHHHHHHCC
T ss_pred cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHh--------ccCCCCCHHHHHHHHHHHHHcC
Confidence 9999999999887654 35667778888889999999999998876532 3334567888999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003829 618 MVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFS 697 (793)
Q Consensus 618 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 697 (793)
+.++|++.+++..+.. |.|....+.++..+...|+.+++..+++...+.. +.|...+..++.+|...|+.++|+.+|+
T Consensus 161 ~~~~A~~~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~ 238 (280)
T PF13429_consen 161 DPDKALRDYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLE 238 (280)
T ss_dssp HHHHHHHHHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccc
Confidence 9999999999999874 5568889999999999999999999999888763 5566788899999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003829 698 EMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIK 736 (793)
Q Consensus 698 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 736 (793)
+..+.... |..+...++.++...|+.++|.++++++.+
T Consensus 239 ~~~~~~p~-d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 239 KALKLNPD-DPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHSTT--HHHHHHHHHHHT-----------------
T ss_pred cccccccc-cccccccccccccccccccccccccccccc
Confidence 99984322 778889999999999999999999988764
No 53
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.58 E-value=1.5e-11 Score=119.45 Aligned_cols=228 Identities=11% Similarity=0.119 Sum_probs=154.7
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHH
Q 003829 429 HGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQA 508 (793)
Q Consensus 429 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a 508 (793)
+.-.|+.-.|.+.|+..++....+ ...|-.+...|.+..+.++....|.+..+.+.. +..+|..-...+.-.+++++|
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~-~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAF-NSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCccc-chHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHH
Confidence 445678888888888888764332 233777778888999999999999998887654 777888888888888899999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhH
Q 003829 509 MSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSE 588 (793)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 588 (793)
..=|++.+..... +...|..+.-+..+.++++++...|++.++. ++.-+..|+.....+...++++.|.+.|+..+..
T Consensus 414 ~aDF~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 414 IADFQKAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred HHHHHHHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 9999999887554 5666766767777888999999999998875 3556778888889999999999999988876531
Q ss_pred HHHHHHHHCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 003829 589 RAFLELKKKGFSPDIP--TLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILA 666 (793)
Q Consensus 589 ~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 666 (793)
. -...++-.+.. +--+++..- -.+++..|..++++..+.+ +-....|..|...-.+.|+.++|+++|++...
T Consensus 492 E----~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~D-pkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 492 E----PREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELD-PKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred c----cccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccC-chHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 0 00111111111 111111111 2255666666666666554 33445566666666666666666666665543
No 54
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=1.2e-10 Score=115.57 Aligned_cols=279 Identities=13% Similarity=0.070 Sum_probs=151.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003829 417 PNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLI 496 (793)
Q Consensus 417 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~ 496 (793)
.+......-.+-+...+++.+..++++.+.+.. ++....+-.-|..+...|+..+-..+=.+|.+.- +....+|..+.
T Consensus 242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg 319 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVG 319 (611)
T ss_pred hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHH
Confidence 355555556666667777777777777776553 4445555555556666666666666666666653 33556676676
Q ss_pred HHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHcCCCHH
Q 003829 497 SAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREID 576 (793)
Q Consensus 497 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 576 (793)
-.|...|+.++|++.|.+....+.. -...|-.+...|.-.|+.|+|...+...-+. .+-....+.-+.--|.+.++.+
T Consensus 320 ~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~k 397 (611)
T KOG1173|consen 320 CYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLK 397 (611)
T ss_pred HHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHH
Confidence 6666667777777777766654322 3345666666666667777776666554432 1111112222333345555555
Q ss_pred HHHHHHHHHHhHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----C--CCCCHHHHHHHHHHHH
Q 003829 577 QMLALSEEIYSERAFLELKKKGFSP-DIPTLNAMISIYGRRQMVAKTNEILHFMNDS----G--FTPSLTTYNTLMYMYS 649 (793)
Q Consensus 577 ~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~--~~~~~~~~~~l~~~~~ 649 (793)
.|.++|.+.. ++.| |+.+++.+.-.....+.+.+|..+|+..+.. + ..--..+++.|..+|.
T Consensus 398 LAe~Ff~~A~-----------ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~R 466 (611)
T KOG1173|consen 398 LAEKFFKQAL-----------AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYR 466 (611)
T ss_pred HHHHHHHHHH-----------hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHH
Confidence 5555554322 2222 3445555555555555555555555554421 0 0012233455555555
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 003829 650 RSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNT 713 (793)
Q Consensus 650 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 713 (793)
+.+.+++|+..+++.+.. .+-+..++.+++..|...|+++.|.+.|.+.+- +.|+..+...
T Consensus 467 kl~~~~eAI~~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~ 527 (611)
T KOG1173|consen 467 KLNKYEEAIDYYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISE 527 (611)
T ss_pred HHhhHHHHHHHHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHH
Confidence 555666666666555554 233455555555555555666666666655555 4554433333
No 55
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.57 E-value=2.1e-11 Score=112.34 Aligned_cols=288 Identities=14% Similarity=0.117 Sum_probs=196.1
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCChHHHHH
Q 003829 259 PWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSP---DKVTYNALLDVYGKCRRPKEAMQ 335 (793)
Q Consensus 259 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~~---~~~~~~~li~~~~~~g~~~~A~~ 335 (793)
+.++|+++|-+|.+.... ...+-.+|.+.|.+.|..|.|+.+++.+.+..--+ .......|..-|...|-++.|+.
T Consensus 50 Q~dKAvdlF~e~l~~d~~-t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~ 128 (389)
T COG2956 50 QPDKAVDLFLEMLQEDPE-TFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAED 128 (389)
T ss_pred CcchHHHHHHHHHhcCch-hhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 356666666666653221 23344455566666777777777777776651000 12234456677888888888888
Q ss_pred HHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003829 336 VLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDV----FTYTTLLSGFEKAGKDESAMKVFEEMR 411 (793)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~~~ 411 (793)
+|..+.+.+ .--..+...|+..|-...++++|++.-+++.+.|..+.. ..|+-+...+....+++.|+.++++..
T Consensus 129 ~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAl 207 (389)
T COG2956 129 IFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKAL 207 (389)
T ss_pred HHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 888886653 224456777888888888888888888888877655442 345666666667788888999998888
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHH
Q 003829 412 SAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDT 491 (793)
Q Consensus 412 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 491 (793)
+.+ +..+..--.+.+.+...|++..|.+.++.+.+.+...-..+...|..+|.+.|+.++....+.++.+... ....
T Consensus 208 qa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~--g~~~ 284 (389)
T COG2956 208 QAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT--GADA 284 (389)
T ss_pred hhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC--CccH
Confidence 764 2244455567788888999999999999998886666677888888899999999999988888887643 3333
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCChHHHHHHHHHHhcC
Q 003829 492 FNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALAR---GGMWEQSEKIFAEMKGG 553 (793)
Q Consensus 492 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~ 553 (793)
...+........-.+.|..++.+-+.+ +|+...+..++..... .|...+-...+++|...
T Consensus 285 ~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 285 ELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred HHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 444444444445566676666665554 6888888888886653 34466666677777643
No 56
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=2.6e-10 Score=108.54 Aligned_cols=309 Identities=12% Similarity=0.073 Sum_probs=228.4
Q ss_pred CCCHHHHHHHHHHH--HhCCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHH
Q 003829 451 KPDIVTWNTLLAVF--GQNGMDSEVSGVFKEMKRA-GFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTY 527 (793)
Q Consensus 451 ~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 527 (793)
.+...+....+.++ +..++...+...+-.+... -++-|++....+...+...|+.++|...|++....++. +....
T Consensus 191 ~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy-~i~~M 269 (564)
T KOG1174|consen 191 PDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD-NVEAM 269 (564)
T ss_pred CCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh-hhhhH
Confidence 33334444444444 4456665665555444432 35567888999999999999999999999998876433 33334
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCC-CCHHHH
Q 003829 528 NAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSERAFLELKKKGFS-PDIPTL 606 (793)
Q Consensus 528 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 606 (793)
....-.+.+.|+.++...+...+.... .-+...|..-+......+++..|+.+.++.+. +. .++..|
T Consensus 270 D~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~-----------~~~r~~~al 337 (564)
T KOG1174|consen 270 DLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCID-----------SEPRNHEAL 337 (564)
T ss_pred HHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhc-----------cCcccchHH
Confidence 444445677888888888887776432 12333333333444567788888887665432 22 345567
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHH
Q 003829 607 NAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVI-FAYCR 685 (793)
Q Consensus 607 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~-~~~~~ 685 (793)
..-...+...|++++|.-.|+...... |-+..+|..|+..|...|.+.+|.-+-+...+. ++.+..+...++ ..+..
T Consensus 338 ilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~ 415 (564)
T KOG1174|consen 338 ILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFP 415 (564)
T ss_pred HhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeecc
Confidence 666778889999999999999988763 568899999999999999999999998888775 455666665553 33332
Q ss_pred -cCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHH
Q 003829 686 -NGRMKEASRIFSEMRDSGLVPDV-ITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAI 763 (793)
Q Consensus 686 -~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 763 (793)
..--++|.+++++.+. +.|+. ...+.++..+...|++++++.++++.+. ..||....+.|++.+...+.+++|.
T Consensus 416 dp~~rEKAKkf~ek~L~--~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am 491 (564)
T KOG1174|consen 416 DPRMREKAKKFAEKSLK--INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAM 491 (564)
T ss_pred CchhHHHHHHHHHhhhc--cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHH
Confidence 2345889999999988 77775 5667888889999999999999999987 5789999999999999999999999
Q ss_pred HHHHHHhhCCCCCCH
Q 003829 764 TFVNNLSKLDPHVTK 778 (793)
Q Consensus 764 ~~~~~~~~~~~~~~~ 778 (793)
+.|..++.++|++..
T Consensus 492 ~~y~~ALr~dP~~~~ 506 (564)
T KOG1174|consen 492 EYYYKALRQDPKSKR 506 (564)
T ss_pred HHHHHHHhcCccchH
Confidence 999999999998544
No 57
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.56 E-value=4.2e-11 Score=124.68 Aligned_cols=246 Identities=15% Similarity=0.134 Sum_probs=140.9
Q ss_pred HhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCC
Q 003829 199 LHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPD 278 (793)
Q Consensus 199 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~~~~p~ 278 (793)
+...|+.|+..+|..+|..|+..|+.+.|- +|.-|.-+..+.+...++.++.+....+ +.+.+. .|-
T Consensus 16 ~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~An-d~Enpk-----------ep~ 82 (1088)
T KOG4318|consen 16 HEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEAN-DAENPK-----------EPL 82 (1088)
T ss_pred HHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccc-cccCCC-----------CCc
Confidence 334455566666666666666666665555 5555555544445555666665555555 333322 345
Q ss_pred HHHHHHHHHHHHcCCCHHH-----------------------HHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCChHHHH
Q 003829 279 SYTFNTLISCCRRGSLHEE-----------------------AAGVFEEMKL-AGFSPDKVTYNALLDVYGKCRRPKEAM 334 (793)
Q Consensus 279 ~~~~~~l~~~~~~~~~~~~-----------------------A~~~~~~~~~-~g~~~~~~~~~~li~~~~~~g~~~~A~ 334 (793)
..||..|..+|.+.||... -..++..+.- .++-||.. ..+....-.|-++.++
T Consensus 83 aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~illlv~eglwaqll 159 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAILLLVLEGLWAQLL 159 (1088)
T ss_pred hhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHHHHHHHHHHHHHH
Confidence 5566666666666665443 1121111110 01112221 1112222233334444
Q ss_pred HHHHHHHHcCCCCChhHHHHHHHHHHh-cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 003829 335 QVLREMKINGCLPSIVTYNSLISAYAR-DGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSA 413 (793)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 413 (793)
+++..+...... . .+...++-... ...+++-..+.+...+ .++..+|..++......|+++.|..++.+|.+.
T Consensus 160 kll~~~Pvsa~~-~--p~~vfLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~ 233 (1088)
T KOG4318|consen 160 KLLAKVPVSAWN-A--PFQVFLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMKEK 233 (1088)
T ss_pred HHHhhCCccccc-c--hHHHHHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHc
Confidence 444333111000 0 11111222222 2334555554444443 578888999999888999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC
Q 003829 414 GCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGM 469 (793)
Q Consensus 414 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 469 (793)
|++.+...|-.|+-+ .++..-+..+++.|...|+.|+..|+...+..+..+|.
T Consensus 234 gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 234 GFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred CCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 988888877777755 77888888888888889999999998888777777655
No 58
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.56 E-value=1.1e-10 Score=121.63 Aligned_cols=491 Identities=13% Similarity=0.102 Sum_probs=248.2
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC
Q 003829 230 VFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAG 309 (793)
Q Consensus 230 ~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g 309 (793)
++..+...|+.|+.+||..++.-||..| +.+.|- +|.-|.-....-+...|+.++.+..+.++.+.+.
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~~g-dieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCTKG-DIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcccC-CCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 4445555666666666666666666666 555555 6665555555555556666666665555555444
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCCHHHHH
Q 003829 310 FSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVE-IGITPDVFTYT 388 (793)
Q Consensus 310 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~~~~~~~~ 388 (793)
.|-..+|..|..+|...||+.. ++..++ ....++..+...|....-..++..+.- .+.-||..
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~-fe~veq-----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~--- 143 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLIL-FEVVEQ-----------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE--- 143 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHH-HHHHHH-----------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---
Confidence 3455566666666666666543 111111 011122223333333333333332211 11223322
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC
Q 003829 389 TLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGN-RGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQN 467 (793)
Q Consensus 389 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 467 (793)
+.+......|-++.+.+++..+...... ..... +++-... ...+++-..+.+...+ .+++.+|..++..-...
T Consensus 144 n~illlv~eglwaqllkll~~~Pvsa~~-~p~~v--fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaa 217 (1088)
T KOG4318|consen 144 NAILLLVLEGLWAQLLKLLAKVPVSAWN-APFQV--FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAA 217 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCccccc-chHHH--HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhc
Confidence 2333344445555555555444322111 01111 1222221 1223333333332222 57888888888888889
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 003829 468 GMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIF 547 (793)
Q Consensus 468 ~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 547 (793)
|+.+.|..++.+|.+.|++.+.+.|..|+-+ .++...+..++..|.+.|+.|+.+|+...+..+.+.|....+
T Consensus 218 g~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~---- 290 (1088)
T KOG4318|consen 218 GDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYG---- 290 (1088)
T ss_pred CchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhc----
Confidence 9999999999999999988888888887655 778888888888888889999999888887777765542211
Q ss_pred HHHhcCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhHHH---HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003829 548 AEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSERA---FLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNE 624 (793)
Q Consensus 548 ~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 624 (793)
+.+.+ ....+++-..+-.-.| ..|.+..+.-..... +....-.|+.....+|...... ..+|.-++...
T Consensus 291 ----~e~sq-~~hg~tAavrsaa~rg--~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l-~hQgk~e~veq 362 (1088)
T KOG4318|consen 291 ----EEGSQ-LAHGFTAAVRSAACRG--LLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKL-RHQGKGEEVEQ 362 (1088)
T ss_pred ----ccccc-hhhhhhHHHHHHHhcc--cHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHH-HHcCCCchHHH
Confidence 11211 1111111111111112 222222222111100 1111112222222333332222 22444444443
Q ss_pred HHHHHHhC---CCCCCHHHHHHHHHHHH-------------------c---cCCHHHHHHHHHHHHH------------C
Q 003829 625 ILHFMNDS---GFTPSLTTYNTLMYMYS-------------------R---SENFARAEDVLREILA------------K 667 (793)
Q Consensus 625 ~~~~~~~~---~~~~~~~~~~~l~~~~~-------------------~---~g~~~~A~~~~~~~~~------------~ 667 (793)
+...+..- .-..++..|..++.-|. . ..+..+..+.+..... .
T Consensus 363 lvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~ 442 (1088)
T KOG4318|consen 363 LVGQLLNPTLRDSGQNVDAFGALLRQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSST 442 (1088)
T ss_pred HHhhhcCCccccCcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHH
Confidence 33333211 00111222221111111 1 1112222222211110 0
Q ss_pred ----CCCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003829 668 ----GIKP-------DIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIK 736 (793)
Q Consensus 668 ----~~~~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 736 (793)
.+.+ -...-+.++..++...+..+++..-++.... ..+ ..|..|+.-++...+.+.|..+..+...
T Consensus 443 Eler~he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~~-lf~--g~ya~Li~l~~~hdkle~Al~~~~e~d~ 519 (1088)
T KOG4318|consen 443 ELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKILCDEEKYEDL-LFA--GLYALLIKLMDLHDKLEYALSFVDEIDT 519 (1088)
T ss_pred HHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhh--hHHHHHhhhHHHHHHHHHHHhchhhhcc
Confidence 0000 1123345556666666666666544443332 221 5688999999999999999999988763
Q ss_pred c--CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhC
Q 003829 737 Q--GCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKL 772 (793)
Q Consensus 737 ~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 772 (793)
. .+.-|..-+..+.+.+.+.+....+.++++++.+.
T Consensus 520 ~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~ 557 (1088)
T KOG4318|consen 520 RDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSS 557 (1088)
T ss_pred cchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHH
Confidence 2 23335566788888899999999999999998885
No 59
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.55 E-value=4.9e-11 Score=109.97 Aligned_cols=272 Identities=17% Similarity=0.140 Sum_probs=186.4
Q ss_pred CCChHHHHHHHHHHHhccCCCCCccchHHHHHHHHHHHHhcCChHHHHHHHHHHhhCC-CCC--CHHHHHHHHHHHHHcC
Q 003829 146 HKKTDLALDVFEWFRSCCSKDGNLVLRGSVIAVLISMLGKEGKVSVAASLLHGLHKDG-FDI--DVYAYTSLITTYASNG 222 (793)
Q Consensus 146 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~g 222 (793)
++.+++|.+.|..+.+ ..+.+..+...+.+.+.+.|..+.|+.+.+.+.+.. .+. ...+.-.|..-|...|
T Consensus 48 s~Q~dKAvdlF~e~l~------~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aG 121 (389)
T COG2956 48 SNQPDKAVDLFLEMLQ------EDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAG 121 (389)
T ss_pred hcCcchHHHHHHHHHh------cCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhh
Confidence 4577888999888876 233477778888888889999999999988877652 111 1234556777788889
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHH----HHHHHHHHHHcCCCHHHH
Q 003829 223 RYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSY----TFNTLISCCRRGSLHEEA 298 (793)
Q Consensus 223 ~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~~~~~~A 298 (793)
-+|+|..+|..+.+.+ .--..+...|+..|.... +|++|++.-+++.+.+-.+... -|.-+...+....+++.|
T Consensus 122 l~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~tr-eW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A 199 (389)
T COG2956 122 LLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATR-EWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRA 199 (389)
T ss_pred hhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHH
Confidence 9999999998887653 334557778888888887 8899988888888776554322 333444444556778888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 003829 299 AGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEI 378 (793)
Q Consensus 299 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 378 (793)
..++.+..+.+ +..+..--.+.+.+...|+++.|.+.++.+.+.+..--..+...|..+|.+.|+.++....+..+.+.
T Consensus 200 ~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~ 278 (389)
T COG2956 200 RELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET 278 (389)
T ss_pred HHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 88888877763 22344444566777888888888888888877654444556777788888888888888888887775
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003829 379 GITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHG 430 (793)
Q Consensus 379 g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 430 (793)
.. +...-..+........-.+.|...+.+-+.+ .|+...+..++....
T Consensus 279 ~~--g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l 326 (389)
T COG2956 279 NT--GADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHL 326 (389)
T ss_pred cC--CccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhh
Confidence 32 3333333444444445556666665555544 577777777776654
No 60
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.54 E-value=2e-09 Score=108.84 Aligned_cols=419 Identities=13% Similarity=0.109 Sum_probs=213.1
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 003829 259 PWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLR 338 (793)
Q Consensus 259 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 338 (793)
+-++|........+.++. ..+.|..+.-.+....++++|++.|......+ +-|...+.-|.-.-.+.|+++.....-.
T Consensus 56 ~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~ 133 (700)
T KOG1156|consen 56 KKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRN 133 (700)
T ss_pred chHHHHHHHHHHhccCcc-cchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 444444444444443332 33444444444444455555555555555443 2234444444444445555555544444
Q ss_pred HHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHH------HHHHHcCCHHHHHHHHHHHH
Q 003829 339 EMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIG-ITPDVFTYTTLL------SGFEKAGKDESAMKVFEEMR 411 (793)
Q Consensus 339 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~~~~~~~~~li------~~~~~~g~~~~a~~~~~~~~ 411 (793)
...+. .+.....|..++.++.-.|+...|..++++..+.- ..|+...|.... ....+.|..++|.+.+..-.
T Consensus 134 ~LLql-~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e 212 (700)
T KOG1156|consen 134 QLLQL-RPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNE 212 (700)
T ss_pred HHHHh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhh
Confidence 44432 22233455555555555555555555555555442 123333322211 22334555555555554433
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH-HHHHhCCChHHHH-HHHHHHHHcCCCCCH
Q 003829 412 SAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLL-AVFGQNGMDSEVS-GVFKEMKRAGFIPER 489 (793)
Q Consensus 412 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~a~-~~~~~m~~~~~~~~~ 489 (793)
.. +......-..-...+.+.+++++|..++..++.. .||...|...+ .++.+-.+.-++. .+|....+. ++...
T Consensus 213 ~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~-y~r~e 288 (700)
T KOG1156|consen 213 KQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK-YPRHE 288 (700)
T ss_pred hH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc-Ccccc
Confidence 22 1112222333445555666666666666666655 34444444333 3332222222332 444444332 11000
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH----HHHHhcCC----------C
Q 003829 490 DTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKI----FAEMKGGR----------C 555 (793)
Q Consensus 490 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~----~~~~~~~~----------~ 555 (793)
.....-+.......-.+..-+++..+.++|+.+-.. .+...|-.-...+-..++ ...+...+ -
T Consensus 289 ~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~---dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E 365 (700)
T KOG1156|consen 289 CPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFK---DLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQE 365 (700)
T ss_pred cchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhh---hhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccC
Confidence 001111111111222334445555666666553222 222222211111111111 11111110 1
Q ss_pred CCCHhh--HHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003829 556 KPNELT--YSSLLHAYANGREIDQMLALSEEIYSERAFLELKKKGFSPD-IPTLNAMISIYGRRQMVAKTNEILHFMNDS 632 (793)
Q Consensus 556 ~p~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 632 (793)
+|+... +..++..+-..|+++.|..+.+..+ +..|+ +..|..-.+.+.+.|++++|..++++..+.
T Consensus 366 ~PttllWt~y~laqh~D~~g~~~~A~~yId~AI-----------dHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~el 434 (700)
T KOG1156|consen 366 PPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAI-----------DHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQEL 434 (700)
T ss_pred CchHHHHHHHHHHHHHHHcccHHHHHHHHHHHh-----------ccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Confidence 444443 4456778889999999999987643 34565 346667778999999999999999999988
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHH--------HHHHH--HHHHHHcCCHHHHHHHHHHHHH
Q 003829 633 GFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDII--------SYNTV--IFAYCRNGRMKEASRIFSEMRD 701 (793)
Q Consensus 633 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--------~~~~l--~~~~~~~g~~~~A~~~~~~~~~ 701 (793)
+ .+|...-.--+.-..+.++.++|.++.....+.|. +.. .|-.+ +.+|.+.|++..|++-|..+.+
T Consensus 435 D-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~--~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k 510 (700)
T KOG1156|consen 435 D-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF--GAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEK 510 (700)
T ss_pred c-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc--chhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHH
Confidence 6 56666655667777889999999999999998763 221 22222 3578888888888777666554
No 61
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.54 E-value=3.5e-12 Score=129.22 Aligned_cols=285 Identities=14% Similarity=0.093 Sum_probs=154.2
Q ss_pred hHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCCHHHHHHH
Q 003829 189 VSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGC--KPTLITYNVILNVYGKMGMPWNKIMAL 266 (793)
Q Consensus 189 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~p~~~~~~~ll~~~~~~g~~~~~a~~~ 266 (793)
..+|...|+.+... ...+.++...++++|...+++++|.++|+.+.+..+ .-+...|.+.+.-+.+ +-++..
T Consensus 335 ~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~-----~v~Ls~ 408 (638)
T KOG1126|consen 335 CREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD-----EVALSY 408 (638)
T ss_pred HHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh-----hHHHHH
Confidence 34566666653333 222445556666666666666666666666655421 1244555555544422 111111
Q ss_pred H-HHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 003829 267 V-EGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSP-DKVTYNALLDVYGKCRRPKEAMQVLREMKING 344 (793)
Q Consensus 267 ~-~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 344 (793)
+ +.+.... +-...+|.++..+|.-+++++.|++.|++..+. .| ...+|+.+..-+....++++|...|+..+..
T Consensus 409 Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~- 484 (638)
T KOG1126|consen 409 LAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV- 484 (638)
T ss_pred HHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC-
Confidence 1 1122211 113556666666666666666666666666655 23 4556666666666666666666666665432
Q ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 003829 345 CLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNA 424 (793)
Q Consensus 345 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 424 (793)
.+.+--+|.-+...|.+.++++.|+-.|++..+.+ +-+.+....+...+-+.|+.|+|+++++++...... |...--.
T Consensus 485 ~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~ 562 (638)
T KOG1126|consen 485 DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYH 562 (638)
T ss_pred CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHH
Confidence 11122244455566666666666666666666543 234455555556666666666666666666554322 3333333
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCC
Q 003829 425 LIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFI 486 (793)
Q Consensus 425 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 486 (793)
.+..+...+++++|+..++++.+. ++.+...+-.+...|-+.|+.+.|+.-|.-+.+...+
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 444555566666666666666554 1233455556666666666666666666666555433
No 62
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.54 E-value=1.7e-08 Score=102.30 Aligned_cols=603 Identities=13% Similarity=0.110 Sum_probs=350.3
Q ss_pred CCChHHHHHHHHHHHhccCCCCCccchHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHH
Q 003829 146 HKKTDLALDVFEWFRSCCSKDGNLVLRGSVIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYR 225 (793)
Q Consensus 146 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 225 (793)
.+.+...+++.+.+.+ .++....+.++..-.+...|+-++|....+..++.++. +..+|..++-.+....+++
T Consensus 20 ~kQYkkgLK~~~~iL~------k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~dK~Y~ 92 (700)
T KOG1156|consen 20 TKQYKKGLKLIKQILK------KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSDKKYD 92 (700)
T ss_pred HHHHHhHHHHHHHHHH------hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhhhhHH
Confidence 4567777888887776 23335566677777777889999999999988876655 6778888888888888999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 003829 226 EAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEM 305 (793)
Q Consensus 226 ~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 305 (793)
+|++.|..+..-+ +.|...|.-+.-.-.+.+ +++.....-.+..+..+. ....|..+..++.-.|++..|..+.++.
T Consensus 93 eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmR-d~~~~~~tr~~LLql~~~-~ra~w~~~Avs~~L~g~y~~A~~il~ef 169 (700)
T KOG1156|consen 93 EAIKCYRNALKIE-KDNLQILRDLSLLQIQMR-DYEGYLETRNQLLQLRPS-QRASWIGFAVAQHLLGEYKMALEILEEF 169 (700)
T ss_pred HHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998875 336667766655556666 777777777777665332 4556777888888889999999999998
Q ss_pred HHCC-CCCCHHHHHHH------HHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 003829 306 KLAG-FSPDKVTYNAL------LDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEI 378 (793)
Q Consensus 306 ~~~g-~~~~~~~~~~l------i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 378 (793)
.+.. -.|+...|... .....+.|.+++|++.+...... +......-.+-...+.+.|++++|..++..++..
T Consensus 170 ~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r 248 (700)
T KOG1156|consen 170 EKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER 248 (700)
T ss_pred HHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh
Confidence 8763 24555555432 23455778888888888776443 2212223345667788999999999999999987
Q ss_pred CCCCCHHHHHHHHH-HHHHcCCHHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 003829 379 GITPDVFTYTTLLS-GFEKAGKDESAM-KVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVT 456 (793)
Q Consensus 379 g~~~~~~~~~~li~-~~~~~g~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 456 (793)
.||..-|...+. ++.+..+.-++. .+|....+.-.. .......=+.......-.+..-+++....+.|+++-
T Consensus 249 --nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r-~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~v--- 322 (700)
T KOG1156|consen 249 --NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPR-HECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSV--- 322 (700)
T ss_pred --CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcc-cccchhccHHHhCcchhHHHHHHHHHHHhhcCCCch---
Confidence 566665555444 443333333333 666665543111 000000001111111112333444555556554432
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHH----HcC----------CCCCHH--HHHHHHHHHhccCCHHHHHHHHHHHHHCCC
Q 003829 457 WNTLLAVFGQNGMDSEVSGVFKEMK----RAG----------FIPERD--TFNTLISAYSRCGSFDQAMSIYKRMLEAGV 520 (793)
Q Consensus 457 ~~~l~~~~~~~~~~~~a~~~~~~m~----~~~----------~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 520 (793)
+..+...|-.....+-..++.-.+. ..| -+|... ++..++..+-+.|+++.|..+++..+..-+
T Consensus 323 f~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTP 402 (700)
T KOG1156|consen 323 FKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTP 402 (700)
T ss_pred hhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCc
Confidence 2223322222221111111111111 111 123332 456677788889999999999998887622
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCC
Q 003829 521 TPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSERAFLELKKKGFS 600 (793)
Q Consensus 521 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 600 (793)
. -++.|..-.+.+...|++++|...+++..+.+ .+|...-.--..-..+.++.++|.++...+.... . |..
T Consensus 403 T-liEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~------~-~~~ 473 (700)
T KOG1156|consen 403 T-LIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREG------F-GAV 473 (700)
T ss_pred h-HHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhcc------c-chh
Confidence 2 23445555577888899999999999888754 3444433344445567788888888776544211 0 111
Q ss_pred CCH---H-HHH--HHHHHHHhcCCHHHHHHHHHHHHhC-----CCCCCHHHH----------HHHHHHHHccC-------
Q 003829 601 PDI---P-TLN--AMISIYGRRQMVAKTNEILHFMNDS-----GFTPSLTTY----------NTLMYMYSRSE------- 652 (793)
Q Consensus 601 ~~~---~-~~~--~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~----------~~l~~~~~~~g------- 652 (793)
.+. . +|- .-+.+|.++|++..|++-|..+.+. .-.-|-.+| -.|+...-...
T Consensus 474 ~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k~~~~~~~dqfDfhtyc~rk~tlrsYv~ll~~~d~L~~~p~y~~ 553 (700)
T KOG1156|consen 474 NNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEKHYKTWSEDQFDFHTYCMRKGTLRSYVELLEWEDNLRSSPYYLR 553 (700)
T ss_pred hhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhHHHHHHhcCcHHHHHHHHHHHHhhccChHHHH
Confidence 111 1 111 1234677777777777665555432 012233333 22332211111
Q ss_pred CHHHHHHHHHHHHHCC-C-CCCHHHHHHHH----HHHHHc-CCHHHHHHHHHHHH---------HCCCC--CCHHHHHHH
Q 003829 653 NFARAEDVLREILAKG-I-KPDIISYNTVI----FAYCRN-GRMKEASRIFSEMR---------DSGLV--PDVITYNTF 714 (793)
Q Consensus 653 ~~~~A~~~~~~~~~~~-~-~~~~~~~~~l~----~~~~~~-g~~~~A~~~~~~~~---------~~~~~--p~~~~~~~l 714 (793)
-...|+++|=.|.... . .+.......|- ....+. .+-..|.+--+.+. +.|.. +|.. .+
T Consensus 554 Aa~~Ai~iYl~l~d~p~~~~~~~~~~~~ms~e~kk~~~k~rk~~kk~~~e~~~~~~~~~~~~~s~~~~~~~~d~~---~~ 630 (700)
T KOG1156|consen 554 AAKGAIEIYLRLHDSPNMYTNKADEIEKMSDEEKKIKKKQRKAKKKAKKEAKKKKDKKKKEAKSQSGKPVDIDED---PF 630 (700)
T ss_pred HHHHHHHHHHHHhcCcccccccchhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCc---ch
Confidence 1345666666666531 0 00111111111 111000 11112222111111 11222 3332 45
Q ss_pred HHHHHhcCC-hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCH
Q 003829 715 VASYAADSL-FVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTK 778 (793)
Q Consensus 715 ~~~~~~~g~-~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 778 (793)
+..+.+..+ .++|.+++..+...+ +.+..+|..-...|.+.|++.-|...++++....+..+.
T Consensus 631 gekL~~t~~Pl~ea~kf~~~l~~~~-~~~~~~~iL~~ely~rk~k~~l~~~~~~~~~~~~~~~~~ 694 (700)
T KOG1156|consen 631 GEKLLKTEDPLEEARKFLPNLQHKG-KEKGETYILSFELYYRKGKFLLALACLNNAEGIHGTHPS 694 (700)
T ss_pred hhhHhhcCChHHHHHHHHHHHHHhc-ccchhhhhhhHHHHHHHHHHHHHHHHHHhhhhhcCCCCc
Confidence 556666655 788999999887764 556788888888899999999999999998888766544
No 63
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.52 E-value=1.3e-10 Score=110.80 Aligned_cols=294 Identities=12% Similarity=0.115 Sum_probs=149.4
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 003829 432 RGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSI 511 (793)
Q Consensus 432 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 511 (793)
.|++.+|++...+..+.+ ......|..-..+..+.|+.+.+-.++.+..+.-..++..............|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 456666666665544443 1223334444455556666666666666665543333444555555666667777777777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhHHHH
Q 003829 512 YKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSERAF 591 (793)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 591 (793)
.+++.+.+.. ..........+|.+.|++.+...++.++.+.+.-.+... ..+
T Consensus 176 v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~-----------------~~l---------- 227 (400)
T COG3071 176 VDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEA-----------------ARL---------- 227 (400)
T ss_pred HHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHH-----------------HHH----------
Confidence 7777666555 556666666777777777777777777766553322211 000
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC
Q 003829 592 LELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKP 671 (793)
Q Consensus 592 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 671 (793)
...+|..+++-....+..+.-...++..-.. ...++..-..++.-+.++|+.++|.++.++..+.+..|
T Consensus 228 ----------e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~ 296 (400)
T COG3071 228 ----------EQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDP 296 (400)
T ss_pred ----------HHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccCh
Confidence 0112222222222222233322333333222 12334444445555555555555555555555554443
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003829 672 DIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVD 751 (793)
Q Consensus 672 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 751 (793)
+. .....+.+-++.+.-.+..++-.+.-.. ++..+.+|+..|.+.+.+.+|.++++..++ ..|+..+|+.+++
T Consensus 297 ~L----~~~~~~l~~~d~~~l~k~~e~~l~~h~~-~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~ 369 (400)
T COG3071 297 RL----CRLIPRLRPGDPEPLIKAAEKWLKQHPE-DPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELAD 369 (400)
T ss_pred hH----HHHHhhcCCCCchHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHH
Confidence 31 1112233444444444444444442111 234555566666666666666666665554 3455566666666
Q ss_pred HHHccCCHHHHHHHHHHHhhC
Q 003829 752 GYCKLNQRYEAITFVNNLSKL 772 (793)
Q Consensus 752 ~~~~~g~~~~A~~~~~~~~~~ 772 (793)
++.+.|+..+|....++.+..
T Consensus 370 ~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 370 ALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHHHcCChHHHHHHHHHHHHH
Confidence 666666666666665555533
No 64
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.51 E-value=2.2e-10 Score=109.35 Aligned_cols=285 Identities=12% Similarity=0.052 Sum_probs=210.5
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 003829 259 PWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLR 338 (793)
Q Consensus 259 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 338 (793)
+|..|+++..+..+.+-. ....|..-..+--+.|+.+.+-.++.+..+.--.++...+-+........|+++.|..-++
T Consensus 99 ~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~ 177 (400)
T COG3071 99 DFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVD 177 (400)
T ss_pred cHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHH
Confidence 677777777776666543 2334555555666778888888888888776334566667777788888888888888888
Q ss_pred HHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003829 339 EMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDV-------FTYTTLLSGFEKAGKDESAMKVFEEMR 411 (793)
Q Consensus 339 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~-------~~~~~li~~~~~~g~~~~a~~~~~~~~ 411 (793)
++.+.+ +.+.........+|.+.|++.+...++..|.+.|.--|. .+|..++.-....+..+.-...++...
T Consensus 178 ~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~p 256 (400)
T COG3071 178 QLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQP 256 (400)
T ss_pred HHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhcc
Confidence 887763 336677788888888888888888888888888765554 355666666666666666566666655
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHH
Q 003829 412 SAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDT 491 (793)
Q Consensus 412 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 491 (793)
.+ .+.++..-.+++.-+..+|+.++|.++.++..+++..+. -...-.+.+-++.+.-++..+.-.+... .+...
T Consensus 257 r~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h~-~~p~L 330 (400)
T COG3071 257 RK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQHP-EDPLL 330 (400)
T ss_pred HH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhCC-CChhH
Confidence 43 345677777888888899999999999998888765555 2222344566777777777777666533 35678
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhcC
Q 003829 492 FNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGG 553 (793)
Q Consensus 492 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 553 (793)
+..|...|.+.+.+.+|.+.|+...+. .|+..+|+.+..++.+.|+.++|.++.++....
T Consensus 331 ~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 331 LSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 888999999999999999999977765 678899999999999999999999998887643
No 65
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.48 E-value=3.7e-12 Score=117.06 Aligned_cols=241 Identities=13% Similarity=0.073 Sum_probs=202.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCCCHHHH
Q 003829 527 YNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSERAFLELKKKGFSPDIPTL 606 (793)
Q Consensus 527 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 606 (793)
-+.+..+|.+.|.+.+|.+.++..++. .|-+.||..|-..|.+..+...|+.++.+.+. .++-++...
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld----------~fP~~VT~l 293 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLD----------SFPFDVTYL 293 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhh----------cCCchhhhh
Confidence 356778888999999999999888776 67778888888999999999999888776432 234456666
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 003829 607 NAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRN 686 (793)
Q Consensus 607 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 686 (793)
..+.+.+-..++.++|.++|+...+.. +.++....++...|.-.++++-|+.+|+++++.|+. +...|+.+.-+|...
T Consensus 294 ~g~ARi~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~ya 371 (478)
T KOG1129|consen 294 LGQARIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYA 371 (478)
T ss_pred hhhHHHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhh
Confidence 777888888999999999999999875 678888888888899999999999999999999865 888999999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 003829 687 GRMKEASRIFSEMRDSGLVPDV--ITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAIT 764 (793)
Q Consensus 687 g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 764 (793)
+++|-++.-|++++..--.|+. .+|..+.......|++.-|.+.|+-++..+ ......++.|+-.-.+.|+.++|+.
T Consensus 372 qQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Ars 450 (478)
T KOG1129|consen 372 QQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARS 450 (478)
T ss_pred cchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHH
Confidence 9999999999999875444443 688899999999999999999999988643 2247889999988889999999999
Q ss_pred HHHHHhhCCCCCCHHHHH
Q 003829 765 FVNNLSKLDPHVTKELEC 782 (793)
Q Consensus 765 ~~~~~~~~~~~~~~~~~~ 782 (793)
+++.+....|+--+.+++
T Consensus 451 ll~~A~s~~P~m~E~~~N 468 (478)
T KOG1129|consen 451 LLNAAKSVMPDMAEVTTN 468 (478)
T ss_pred HHHHhhhhCccccccccc
Confidence 999999999986665544
No 66
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.48 E-value=6.1e-08 Score=102.71 Aligned_cols=144 Identities=14% Similarity=0.162 Sum_probs=89.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003829 602 DIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIF 681 (793)
Q Consensus 602 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 681 (793)
...+|..+..+-.+.|.+.+|.+-|-+. .|+..|...++...+.|.+++-.+++..+.++.-.|... ..|+.
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~ 1174 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIF 1174 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHH
Confidence 4567777888878888888887766542 466778888888888888888888888777765444433 46777
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHH
Q 003829 682 AYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYE 761 (793)
Q Consensus 682 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 761 (793)
+|++.++..+-.+++ ..|+......++.-|...|.++.|.-+|... .-|..|+..+...|++..
T Consensus 1175 AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~ 1238 (1666)
T KOG0985|consen 1175 AYAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQG 1238 (1666)
T ss_pred HHHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHH
Confidence 788887776655443 3445555556666666666665554444332 223444444445555555
Q ss_pred HHHHHHHH
Q 003829 762 AITFVNNL 769 (793)
Q Consensus 762 A~~~~~~~ 769 (793)
|+...+++
T Consensus 1239 AVD~aRKA 1246 (1666)
T KOG0985|consen 1239 AVDAARKA 1246 (1666)
T ss_pred HHHHhhhc
Confidence 54444443
No 67
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.47 E-value=1.5e-08 Score=107.37 Aligned_cols=611 Identities=11% Similarity=0.013 Sum_probs=322.8
Q ss_pred hHHHHHHHHHHHhccCCCCCccchHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 003829 149 TDLALDVFEWFRSCCSKDGNLVLRGSVIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAV 228 (793)
Q Consensus 149 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 228 (793)
...|+..|-...+ .++. -.-+|..+...|....+...|.+.|+.+.+.+.. +...+......|++...++.|.
T Consensus 474 ~~~al~ali~alr---ld~~---~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~ 546 (1238)
T KOG1127|consen 474 SALALHALIRALR---LDVS---LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAF 546 (1238)
T ss_pred HHHHHHHHHHHHh---cccc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHH
Confidence 4455555544433 2222 3346777777777777778888888877766544 6677888888888888888888
Q ss_pred HHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003829 229 MVFKKMEEEGCK-PTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKL 307 (793)
Q Consensus 229 ~~~~~~~~~~~~-p~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 307 (793)
.+.-..-+.... .-...|-.+.-.|.+.+ +...++.-|+...+..+. |...|..++.+|.+.|++..|.++|.+...
T Consensus 547 ~I~l~~~qka~a~~~k~nW~~rG~yyLea~-n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~ 624 (1238)
T KOG1127|consen 547 EICLRAAQKAPAFACKENWVQRGPYYLEAH-NLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASL 624 (1238)
T ss_pred HHHHHHhhhchHHHHHhhhhhccccccCcc-chhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHh
Confidence 874444332110 01122333444455666 778888888887776655 677888888888888888888888888776
Q ss_pred CCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHc------CCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHH---
Q 003829 308 AGFSPDK-VTYNALLDVYGKCRRPKEAMQVLREMKIN------GCLPSIVTYNSLISAYARDGLLEEAMELKTQMVE--- 377 (793)
Q Consensus 308 ~g~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--- 377 (793)
. .|+. ..-.-.....|..|.+.+|+..+..+... +..--..++..+...+.-.|-..+|.+.+++-++
T Consensus 625 L--rP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~ 702 (1238)
T KOG1127|consen 625 L--RPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFI 702 (1238)
T ss_pred c--CcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 5 3332 22222334456778888888888776542 1111122343344444444444444444444332
Q ss_pred ----cCCCCCHHHHHHHHHHHHHcCCHH------HHHHHH-HHHHHCCCCC--------------------CHHHHHHHH
Q 003829 378 ----IGITPDVFTYTTLLSGFEKAGKDE------SAMKVF-EEMRSAGCKP--------------------NICTFNALI 426 (793)
Q Consensus 378 ----~g~~~~~~~~~~li~~~~~~g~~~------~a~~~~-~~~~~~~~~~--------------------~~~~~~~l~ 426 (793)
.....+...+..+-.+|.-.-..+ ....++ .+....+..+ +..+|..++
T Consensus 703 ~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLG 782 (1238)
T KOG1127|consen 703 VSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLG 782 (1238)
T ss_pred HHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHh
Confidence 211112222222222111000000 000111 1111111111 122233333
Q ss_pred HHHHh--------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003829 427 KMHGN--------RGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISA 498 (793)
Q Consensus 427 ~~~~~--------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~ 498 (793)
..|.+ ..+...|+..+.+.++.. .-+..+|+.|.-. ...|.+.-+..-|-.-.... +....+|..+...
T Consensus 783 inylr~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL 859 (1238)
T KOG1127|consen 783 INYLRYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVL 859 (1238)
T ss_pred HHHHHHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheecccee
Confidence 22221 112235666666554431 2245556655544 45555555555554433332 2245567777777
Q ss_pred HhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHh----cCCCCCCHhhHHHHHHHHHcCCC
Q 003829 499 YSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMK----GGRCKPNELTYSSLLHAYANGRE 574 (793)
Q Consensus 499 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~p~~~~~~~l~~~~~~~~~ 574 (793)
+....+++.|...|.......+. +...|..........|+.-++..+|..-- ..|--++..-|..........|+
T Consensus 860 ~l~n~d~E~A~~af~~~qSLdP~-nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~ 938 (1238)
T KOG1127|consen 860 VLENQDFEHAEPAFSSVQSLDPL-NLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGN 938 (1238)
T ss_pred EEecccHHHhhHHHHhhhhcCch-hhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccc
Confidence 88888999999999988876544 55666555555566788888888887621 12333444444444445566777
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHH----HHHHHHH
Q 003829 575 IDQMLALSEEIYSERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDS-GFTPSLTTYN----TLMYMYS 649 (793)
Q Consensus 575 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~----~l~~~~~ 649 (793)
.++-+...+.+.+-.....---.+.+.+...|...+...-+.+.+++|.+...+.... ...-+...|+ .+...++
T Consensus 939 ~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~l 1018 (1238)
T KOG1127|consen 939 IEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLEL 1018 (1238)
T ss_pred hHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhh
Confidence 7777666665544222222223455666778888887777777777777766654421 0112333343 2334445
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCH-HHHHHHHHHHHhcCChHHH
Q 003829 650 RSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDS-GLVPDV-ITYNTFVASYAADSLFVEA 727 (793)
Q Consensus 650 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~A 727 (793)
..|+++.|..-+...... .+..+-.+-+.. .-.|+++++.+.|++++.- +-..|. .....++.+....+..+.|
T Consensus 1019 slgefe~A~~a~~~~~~e---vdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A 1094 (1238)
T KOG1127|consen 1019 SLGEFESAKKASWKEWME---VDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDA 1094 (1238)
T ss_pred hhcchhhHhhhhcccchh---HHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHH
Confidence 556666554433322211 111111111111 2346677777777776651 112222 2334444555555556666
Q ss_pred HHHHHHHHHcCCCCCHHHHHHH-------------------------------------HHHHHccCCHHHHHHHHHHHh
Q 003829 728 LDVVRYMIKQGCKPNQNTYNSI-------------------------------------VDGYCKLNQRYEAITFVNNLS 770 (793)
Q Consensus 728 ~~~~~~~~~~~~~p~~~~~~~l-------------------------------------~~~~~~~g~~~~A~~~~~~~~ 770 (793)
...+-+.+... +++..+...| -..|.+.|+-....+.+++.+
T Consensus 1095 ~~lLfe~~~ls-~~~~~sll~L~A~~ild~da~~ssaileel~kl~k~e~~~~~~~ll~e~i~~~~~r~~~vk~~~qr~~ 1173 (1238)
T KOG1127|consen 1095 QFLLFEVKSLS-KVQASSLLPLPAVYILDADAHGSSAILEELEKLLKLEWFCWPPGLLKELIYALQGRSVAVKKQIQRAV 1173 (1238)
T ss_pred HHHHHHHHHhC-ccchhhHHHHHHHHHHhhhhhhhHHHHHHHHHhhhhHHhccChhHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 55555544321 2222111111 112556777777778888888
Q ss_pred hCCCCCCHH
Q 003829 771 KLDPHVTKE 779 (793)
Q Consensus 771 ~~~~~~~~~ 779 (793)
.-+|.++..
T Consensus 1174 h~~P~~~~~ 1182 (1238)
T KOG1127|consen 1174 HSNPGDPAL 1182 (1238)
T ss_pred hcCCCChHH
Confidence 888876553
No 68
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.47 E-value=4.8e-08 Score=101.26 Aligned_cols=510 Identities=14% Similarity=0.076 Sum_probs=311.1
Q ss_pred hcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHH---HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHH
Q 003829 185 KEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTY---ASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWN 261 (793)
Q Consensus 185 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~ 261 (793)
..+..+++..-+......+...++.++..+-..+ ...|+.+++ +|....+....|....+.+++...
T Consensus 239 ~~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~--~Lllli~es~i~Re~~~d~ilslm-------- 308 (799)
T KOG4162|consen 239 KLSGPKEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQEEV--ILLLLIEESLIPRENIEDAILSLM-------- 308 (799)
T ss_pred CCCCchHHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHHHH--HHHHHHHhhccccccHHHHHHHHH--------
Confidence 4555666666666666666655555554443332 234555555 444444333333322222211111
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003829 262 KIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMK 341 (793)
Q Consensus 262 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 341 (793)
-.+.++....+.-|...|..+.-+....|+++.+.+.|++....-+ -....|+.+...|...|.-..|..++++-.
T Consensus 309 ---~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~-~~~e~w~~~als~saag~~s~Av~ll~~~~ 384 (799)
T KOG4162|consen 309 ---LLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSF-GEHERWYQLALSYSAAGSDSKAVNLLRESL 384 (799)
T ss_pred ---HHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh-hhHHHHHHHHHHHHHhccchHHHHHHHhhc
Confidence 0111222222345788888888888999999999999999887533 356788899999999999999999999876
Q ss_pred HcCCCCChhHHHHHH-HHHH-hcCCHHHHHHHHHHHHHcC--C--CCCHHHHHHHHHHHHHc-----------CCHHHHH
Q 003829 342 INGCLPSIVTYNSLI-SAYA-RDGLLEEAMELKTQMVEIG--I--TPDVFTYTTLLSGFEKA-----------GKDESAM 404 (793)
Q Consensus 342 ~~~~~~~~~~~~~li-~~~~-~~g~~~~A~~~~~~m~~~g--~--~~~~~~~~~li~~~~~~-----------g~~~~a~ 404 (793)
.....|+..+-..++ ..|. +.|.+++++++..+.+... . ......|..+.-+|... ....++.
T Consensus 385 ~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~ksl 464 (799)
T KOG4162|consen 385 KKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSL 464 (799)
T ss_pred ccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHH
Confidence 654335444433333 3333 4578889888888877631 1 12233444444444321 2235677
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcC
Q 003829 405 KVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAG 484 (793)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 484 (793)
+.+++..+.+.. |..+...+.--|+..++++.|.+..++..+.+-..+...|..|.-.+...+++.+|+.+.+...+.-
T Consensus 465 qale~av~~d~~-dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~ 543 (799)
T KOG4162|consen 465 QALEEAVQFDPT-DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF 543 (799)
T ss_pred HHHHHHHhcCCC-CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh
Confidence 888888876533 4444444555678889999999999999998778899999999999999999999999998877642
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhcC--CCCCCHhhH
Q 003829 485 FIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGG--RCKPNELTY 562 (793)
Q Consensus 485 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~~~ 562 (793)
..|-.....-+..-...++.+++......+... |...- .....|+-....+....+.-. ...-...++
T Consensus 544 -~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~--------we~~~-~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~s 613 (799)
T KOG4162|consen 544 -GDNHVLMDGKIHIELTFNDREEALDTCIHKLAL--------WEAEY-GVQQTLDEGKLLRLKAGLHLALSQPTDAISTS 613 (799)
T ss_pred -hhhhhhchhhhhhhhhcccHHHHHHHHHHHHHH--------HHhhh-hHhhhhhhhhhhhhhcccccCcccccccchhh
Confidence 112222222222233356666666665554431 00000 000111111222222222111 011112222
Q ss_pred HHHHHHHH-c--CCCHHHHHHHHHHHHhHHHHHHHHHCCCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 003829 563 SSLLHAYA-N--GREIDQMLALSEEIYSERAFLELKKKGFSPD------IPTLNAMISIYGRRQMVAKTNEILHFMNDSG 633 (793)
Q Consensus 563 ~~l~~~~~-~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 633 (793)
..+..... + .-..+..+.-+. ... .|+ ...|......+.+.+..++|...+.+.....
T Consensus 614 r~ls~l~a~~~~~~~se~~Lp~s~-----------~~~--~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~ 680 (799)
T KOG4162|consen 614 RYLSSLVASQLKSAGSELKLPSST-----------VLP--GPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID 680 (799)
T ss_pred HHHHHHHHhhhhhcccccccCccc-----------ccC--CCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc
Confidence 22222111 1 111111111100 000 111 2345566667778888888888888877653
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHH--HHHHHHHCCCCCCHHH
Q 003829 634 FTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPD-IISYNTVIFAYCRNGRMKEASR--IFSEMRDSGLVPDVIT 710 (793)
Q Consensus 634 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~~~p~~~~ 710 (793)
+-....|......+...|..++|.+.|...... .|+ +.+..+++.++.+.|+-.-|.+ ++..+++.+.. +...
T Consensus 681 -~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l--dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~-n~ea 756 (799)
T KOG4162|consen 681 -PLSASVYYLRGLLLEVKGQLEEAKEAFLVALAL--DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPL-NHEA 756 (799)
T ss_pred -hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc--CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCC-CHHH
Confidence 566777888888888889999999999888874 444 5677888888988888777777 88888884333 5688
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHH
Q 003829 711 YNTFVASYAADSLFVEALDVVRYMIK 736 (793)
Q Consensus 711 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 736 (793)
|..++..+.+.|+.++|.+.|..+.+
T Consensus 757 W~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 757 WYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHh
Confidence 99999999999999999999998876
No 69
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.46 E-value=3.8e-09 Score=105.73 Aligned_cols=119 Identities=11% Similarity=0.071 Sum_probs=51.2
Q ss_pred HHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHH
Q 003829 287 SCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLE 366 (793)
Q Consensus 287 ~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 366 (793)
+-+...|++++|.+...++...+ +-+...+..-+-+..+.+.+++|+.+.+.-.. ...+..-+.--+.+..+.++.+
T Consensus 20 n~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~--~~~~~~~~fEKAYc~Yrlnk~D 96 (652)
T KOG2376|consen 20 NRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGA--LLVINSFFFEKAYCEYRLNKLD 96 (652)
T ss_pred HHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch--hhhcchhhHHHHHHHHHcccHH
Confidence 33444555555555555555543 22334444444445555555555543332210 0000001011122233455555
Q ss_pred HHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 003829 367 EAMELKTQMVEIGITP-DVFTYTTLLSGFEKAGKDESAMKVFEEMRSA 413 (793)
Q Consensus 367 ~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 413 (793)
+|+..++ |..+ +..+...-...+.+.|++++|..+|+.+.+.
T Consensus 97 ealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn 139 (652)
T KOG2376|consen 97 EALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKN 139 (652)
T ss_pred HHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 5555554 1221 2223333344455555555555555555544
No 70
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.39 E-value=9.1e-08 Score=99.28 Aligned_cols=549 Identities=12% Similarity=0.149 Sum_probs=292.0
Q ss_pred CCChHHHHHHHHHHHhccCCCCCccchHHHHHHHHHHHHhcCChHHHHHHHHHHhhCC--------CCCCHHHHHHHHHH
Q 003829 146 HKKTDLALDVFEWFRSCCSKDGNLVLRGSVIAVLISMLGKEGKVSVAASLLHGLHKDG--------FDIDVYAYTSLITT 217 (793)
Q Consensus 146 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~l~~~ 217 (793)
-|+.+.|.+-.+.+.+ ..+|..+.+.|.+.++++.|.-.+-.|.... ...+...-..+...
T Consensus 741 iG~MD~AfksI~~IkS-----------~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvL 809 (1416)
T KOG3617|consen 741 IGSMDAAFKSIQFIKS-----------DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVL 809 (1416)
T ss_pred eccHHHHHHHHHHHhh-----------hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHH
Confidence 4677777776666543 4578888888888888887766554442110 00011111122223
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHH
Q 003829 218 YASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEE 297 (793)
Q Consensus 218 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 297 (793)
....|.+++|..+|++-++ |..|=..|...| .|++|.++-+.--+.. -..||.....-+-..++.+.
T Consensus 810 AieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g-~w~eA~eiAE~~DRiH---Lr~Tyy~yA~~Lear~Di~~ 876 (1416)
T KOG3617|consen 810 AIELGMLEEALILYRQCKR---------YDLLNKLYQSQG-MWSEAFEIAETKDRIH---LRNTYYNYAKYLEARRDIEA 876 (1416)
T ss_pred HHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcc-cHHHHHHHHhhcccee---hhhhHHHHHHHHHhhccHHH
Confidence 3467889999999988875 344555677778 8999988877533221 23455555555666788888
Q ss_pred HHHHHHHHHH----------CC---------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 003829 298 AAGVFEEMKL----------AG---------FSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISA 358 (793)
Q Consensus 298 A~~~~~~~~~----------~g---------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 358 (793)
|+++|++... .. -..|...|.-....+-..|+++.|+.+|....+ |-.+++.
T Consensus 877 AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI 947 (1416)
T KOG3617|consen 877 ALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRI 947 (1416)
T ss_pred HHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheee
Confidence 8888765321 10 011222333333334456777777777765532 4556667
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC--------CCCCHHHHHHHHHHHH
Q 003829 359 YARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAG--------CKPNICTFNALIKMHG 430 (793)
Q Consensus 359 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~~ 430 (793)
.|-.|+.++|-++-++- | |......+.+.|-..|++.+|...|.+..... -..+...+|. ....
T Consensus 948 ~C~qGk~~kAa~iA~es---g---d~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nl--al~s 1019 (1416)
T KOG3617|consen 948 KCIQGKTDKAARIAEES---G---DKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANL--ALMS 1019 (1416)
T ss_pred EeeccCchHHHHHHHhc---c---cHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH--Hhhc
Confidence 77778888877765542 2 55566667788888888888888777654210 0001111110 0011
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHH--------HH--HcCCCCCHHHHHHHHHHHh
Q 003829 431 NRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKE--------MK--RAGFIPERDTFNTLISAYS 500 (793)
Q Consensus 431 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~--------m~--~~~~~~~~~~~~~l~~~~~ 500 (793)
...+.-.|-.+|++.- .-....+..|-+.|.+.+|+++--+ ++ +.....|+...+.....++
T Consensus 1020 ~~~d~v~aArYyEe~g--------~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~ 1091 (1416)
T KOG3617|consen 1020 GGSDLVSAARYYEELG--------GYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFE 1091 (1416)
T ss_pred CchhHHHHHHHHHHcc--------hhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 1222333334443321 0112233445666666666654221 11 1223346667777777788
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhc-CCCCCCHh----hHHHHHHHHHcCCCH
Q 003829 501 RCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKG-GRCKPNEL----TYSSLLHAYANGREI 575 (793)
Q Consensus 501 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p~~~----~~~~l~~~~~~~~~~ 575 (793)
...++++|..++-...+ |..-+. +|+..+..-..++-+.|-- .+..|+.. .+..+...|.+.|.+
T Consensus 1092 ~~~qyekAV~lL~~ar~---------~~~Alq-lC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Y 1161 (1416)
T KOG3617|consen 1092 NNQQYEKAVNLLCLARE---------FSGALQ-LCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAY 1161 (1416)
T ss_pred hHHHHHHHHHHHHHHHH---------HHHHHH-HHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccch
Confidence 88888888877766554 222222 2333333333333333321 11233333 455667788889998
Q ss_pred HHHHHHHHHHHhHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH-------------HHHHhCCCCCCHHHHH
Q 003829 576 DQMLALSEEIYSERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEIL-------------HFMNDSGFTPSLTTYN 642 (793)
Q Consensus 576 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~-------------~~~~~~~~~~~~~~~~ 642 (793)
..|-+-|.+.-. -..-++++.+.|+.++..-+- +-+...+...++.+..
T Consensus 1162 h~AtKKfTQAGd------------------Kl~AMraLLKSGdt~KI~FFAn~sRqkEiYImAANyLQtlDWq~~pq~mK 1223 (1416)
T KOG3617|consen 1162 HAATKKFTQAGD------------------KLSAMRALLKSGDTQKIRFFANTSRQKEIYIMAANYLQTLDWQDNPQTMK 1223 (1416)
T ss_pred HHHHHHHhhhhh------------------HHHHHHHHHhcCCcceEEEEeeccccceeeeehhhhhhhcccccChHHHh
Confidence 888776654321 011233344445444321110 0111223445555555
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH--------
Q 003829 643 TLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTF-------- 714 (793)
Q Consensus 643 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l-------- 714 (793)
.++..|.+...++.--.+|+...+- ....|..+-.+ .|-.++|-+.+.++.+.+. ....|+.|
T Consensus 1224 ~I~tFYTKgqafd~LanFY~~cAqi----Eiee~q~ydKa---~gAl~eA~kCl~ka~~k~~--~~t~l~~Lq~~~a~vk 1294 (1416)
T KOG3617|consen 1224 DIETFYTKGQAFDHLANFYKSCAQI----EIEELQTYDKA---MGALEEAAKCLLKAEQKNM--STTGLDALQEDLAKVK 1294 (1416)
T ss_pred hhHhhhhcchhHHHHHHHHHHHHHh----hHHHHhhhhHH---hHHHHHHHHHHHHHHhhcc--hHHHHHHHHHHHHHHH
Confidence 5555555544444433333333221 11111111111 1334555555555554221 11222222
Q ss_pred --HHHHHh-cCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHH
Q 003829 715 --VASYAA-DSLFVEALDVVRYMIKQGCKPN----QNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKEL 780 (793)
Q Consensus 715 --~~~~~~-~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 780 (793)
+..... ..+..+.++..+.|++...-+| ...|..|+..+....++..|...++++.+..|.-+...
T Consensus 1295 ~~l~~~q~~~eD~~~~i~qc~~lleep~ld~~Ir~~~~~a~lie~~v~~k~y~~AyRal~el~~k~p~~~~s~ 1367 (1416)
T KOG3617|consen 1295 VQLRKLQIMKEDAADGIRQCTTLLEEPILDDIIRCTRLFALLIEDHVSRKNYKPAYRALTELQKKVPNVDLST 1367 (1416)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHhhCcCCCCcchhHHHHHHHHHHHHhhhhccHHHHHHHHHhhcCCccchhc
Confidence 222111 1255666777777876544443 46788899999999999999999999999998866543
No 71
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.38 E-value=5.5e-08 Score=101.89 Aligned_cols=290 Identities=15% Similarity=0.104 Sum_probs=144.4
Q ss_pred HHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc-----C
Q 003829 289 CRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARD-----G 363 (793)
Q Consensus 289 ~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----g 363 (793)
+...|++++|++.++.-... +......+......+.+.|+.++|..+|..+++.++ .|..-|..+..+..-. .
T Consensus 14 l~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNP-dn~~Yy~~L~~~~g~~~~~~~~ 91 (517)
T PF12569_consen 14 LEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNP-DNYDYYRGLEEALGLQLQLSDE 91 (517)
T ss_pred HHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHhhhcccccc
Confidence 44455555555555444333 111222333445555555555555555555555422 2333333333333211 1
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003829 364 LLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKD-ESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVF 442 (793)
Q Consensus 364 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 442 (793)
+.+...++++++.+.- |.......+.-.+.....+ ..+..++..+..+|++ .+++.+-..|....+.+-..+++
T Consensus 92 ~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~l~ 166 (517)
T PF12569_consen 92 DVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIESLV 166 (517)
T ss_pred cHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHHHH
Confidence 3444555555554431 2222221111111111111 2233444444455533 23444444444443433344444
Q ss_pred HHHHhC--------------CCCCCHH--HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHH
Q 003829 443 DEINKC--------------NCKPDIV--TWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFD 506 (793)
Q Consensus 443 ~~~~~~--------------~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~ 506 (793)
..+... .-.|... ++..+...|...|++++|++++++.++..+. .+..|..-.+.+-+.|+++
T Consensus 167 ~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilKh~G~~~ 245 (517)
T PF12569_consen 167 EEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILKHAGDLK 245 (517)
T ss_pred HHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHCCCHH
Confidence 333211 0123332 2344455566677777777777776665322 3556666677777777777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCH--h----hH--HHHHHHHHcCCCHHHH
Q 003829 507 QAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNE--L----TY--SSLLHAYANGREIDQM 578 (793)
Q Consensus 507 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~----~~--~~l~~~~~~~~~~~~a 578 (793)
+|.+.++...+.+.. |...-+..+..+.+.|++++|.+++......+..|-. . .| .....+|.+.|++..|
T Consensus 246 ~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~A 324 (517)
T PF12569_consen 246 EAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLA 324 (517)
T ss_pred HHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 777777777766554 5556666666777777777777777766554432211 1 11 2344567777888888
Q ss_pred HHHHHHHHh
Q 003829 579 LALSEEIYS 587 (793)
Q Consensus 579 ~~~~~~~~~ 587 (793)
++.|..+..
T Consensus 325 Lk~~~~v~k 333 (517)
T PF12569_consen 325 LKRFHAVLK 333 (517)
T ss_pred HHHHHHHHH
Confidence 777776654
No 72
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.38 E-value=8.4e-10 Score=101.86 Aligned_cols=234 Identities=12% Similarity=0.073 Sum_probs=172.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHH-H
Q 003829 207 DVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNT-L 285 (793)
Q Consensus 207 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~~~~p~~~~~~~-l 285 (793)
|-+--+.+.++|.+.|.+.+|.+.|+..++. .|-+.||..|-.+|.+.. +...|+.++.+-... .|-.+||.. .
T Consensus 222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~rid-QP~~AL~~~~~gld~--fP~~VT~l~g~ 296 (478)
T KOG1129|consen 222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRID-QPERALLVIGEGLDS--FPFDVTYLLGQ 296 (478)
T ss_pred hHHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhc-cHHHHHHHHhhhhhc--CCchhhhhhhh
Confidence 3344467788888888888888888877765 556777888888888887 778888888777654 355555544 4
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCH
Q 003829 286 ISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLL 365 (793)
Q Consensus 286 ~~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 365 (793)
...+-..++.++|.+++.+..+.. +.++.....+...|.-.++++-|+..|+++++.|.. +...|+.+.-+|.-.+++
T Consensus 297 ARi~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~ 374 (478)
T KOG1129|consen 297 ARIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQI 374 (478)
T ss_pred HHHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcch
Confidence 456667788888888888887763 345666666777777788888888888888888765 777888888888888888
Q ss_pred HHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003829 366 EEAMELKTQMVEIGITPDV--FTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFD 443 (793)
Q Consensus 366 ~~A~~~~~~m~~~g~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 443 (793)
+-++.-|.+.......|+. ..|..+.......|++..|.+.|+-.+..+ ......+|.|.-.-.+.|++++|..++.
T Consensus 375 D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~ 453 (478)
T KOG1129|consen 375 DLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLN 453 (478)
T ss_pred hhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHH
Confidence 8888888887766444443 345556667777888888888888777653 2356677888777788888888888888
Q ss_pred HHHhC
Q 003829 444 EINKC 448 (793)
Q Consensus 444 ~~~~~ 448 (793)
.....
T Consensus 454 ~A~s~ 458 (478)
T KOG1129|consen 454 AAKSV 458 (478)
T ss_pred Hhhhh
Confidence 77654
No 73
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.38 E-value=1.4e-07 Score=100.18 Aligned_cols=552 Identities=15% Similarity=0.179 Sum_probs=316.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHH-----HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003829 175 VIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSL-----ITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVI 249 (793)
Q Consensus 175 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l-----~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 249 (793)
-+..++..|.+.|-...|++.+.++..- . ...+.+.+ +..|...-.++.+.+.+..|...++..+..+.-.+
T Consensus 608 Dra~IAqLCEKAGL~qraLehytDl~DI--K-R~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQv 684 (1666)
T KOG0985|consen 608 DRAEIAQLCEKAGLLQRALEHYTDLYDI--K-RVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQV 684 (1666)
T ss_pred cHHHHHHHHHhcchHHHHHHhcccHHHH--H-HHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 3667788888888888888877765321 0 11111111 12334445678888888888888777777776666
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHhC-----------CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHH------------H
Q 003829 250 LNVYGKMGMPWNKIMALVEGMKSA-----------GVKPDSYTFNTLISCCRRGSLHEEAAGVFEEM------------K 306 (793)
Q Consensus 250 l~~~~~~g~~~~~a~~~~~~~~~~-----------~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~------------~ 306 (793)
..-|+..= ..+..+++|+..+.. ++.-|....-..|.+.|+.|++.+.+++-.+- +
T Consensus 685 atky~eql-g~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLk 763 (1666)
T KOG0985|consen 685 ATKYHEQL-GAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLK 763 (1666)
T ss_pred HHHHHHHh-CHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHH
Confidence 66666553 367777888776553 24456666666778888888888877765432 1
Q ss_pred HC---------------CCCCCHHHH------HHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhH------------HH
Q 003829 307 LA---------------GFSPDKVTY------NALLDVYGKCRRPKEAMQVLREMKINGCLPSIVT------------YN 353 (793)
Q Consensus 307 ~~---------------g~~~~~~~~------~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~------------~~ 353 (793)
+. ++.+|.+.| ...|..|.+.=++...-.+.-.+++..+. .... ..
T Consensus 764 eAkL~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC~-E~~ik~Li~~v~gq~~~d 842 (1666)
T KOG0985|consen 764 EAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDCS-EDFIKNLILSVRGQFPVD 842 (1666)
T ss_pred hccccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCCc-HHHHHHHHHHHhccCChH
Confidence 11 122222222 11233343333332222222222221111 0011 11
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH---------HHHHHH-H-----------H
Q 003829 354 SLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAM---------KVFEEM-R-----------S 412 (793)
Q Consensus 354 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~---------~~~~~~-~-----------~ 412 (793)
-|+.-.-+.++.+--...++..++.|.. |..+++.|...|...++-.+-. .+..+. . +
T Consensus 843 eLv~EvEkRNRLklLlp~LE~~i~eG~~-d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYe 921 (1666)
T KOG0985|consen 843 ELVEEVEKRNRLKLLLPWLESLIQEGSQ-DPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYE 921 (1666)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhccCc-chHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeec
Confidence 2233344455666666777777788754 8888999888887654432211 011111 1 1
Q ss_pred CC--------CCCCHHHHHHHHHHHHhcCCHHHHH-----------HHHHHHHhCCC--CCCHHHHHHHHHHHHhCCChH
Q 003829 413 AG--------CKPNICTFNALIKMHGNRGNFVEMM-----------KVFDEINKCNC--KPDIVTWNTLLAVFGQNGMDS 471 (793)
Q Consensus 413 ~~--------~~~~~~~~~~l~~~~~~~g~~~~A~-----------~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~ 471 (793)
+| +......|....+.+.+..+.+.-. ++.+.+..-.+ ..|+.....-+.++...+-..
T Consensus 922 rGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~ 1001 (1666)
T KOG0985|consen 922 RGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPN 1001 (1666)
T ss_pred ccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcH
Confidence 11 0111233444555555555544333 33344444332 346677777888999999999
Q ss_pred HHHHHHHHHHHcC--CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 003829 472 EVSGVFKEMKRAG--FIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAE 549 (793)
Q Consensus 472 ~a~~~~~~m~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 549 (793)
+-+++++++.-.+ +..+...-+.|+-...+. +.....++.+++-..+.. + +.......+-+++|..+|++
T Consensus 1002 eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyDa~-~------ia~iai~~~LyEEAF~ifkk 1073 (1666)
T KOG0985|consen 1002 ELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYDAP-D------IAEIAIENQLYEEAFAIFKK 1073 (1666)
T ss_pred HHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCCch-h------HHHHHhhhhHHHHHHHHHHH
Confidence 9999999887432 222223334444333332 334455555554433211 1 11112222333444444433
Q ss_pred HhcC---------------------CCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCCCHHHHHH
Q 003829 550 MKGG---------------------RCKPNELTYSSLLHAYANGREIDQMLALSEEIYSERAFLELKKKGFSPDIPTLNA 608 (793)
Q Consensus 550 ~~~~---------------------~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 608 (793)
.-.. .-...+..|..+..+-...|.+.+|++-|-+ ..|+..|..
T Consensus 1074 f~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyik---------------adDps~y~e 1138 (1666)
T KOG0985|consen 1074 FDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIK---------------ADDPSNYLE 1138 (1666)
T ss_pred hcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHh---------------cCCcHHHHH
Confidence 2100 0012345566666666666666666654421 346778999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 003829 609 MISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGR 688 (793)
Q Consensus 609 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 688 (793)
+++...+.|.+++-.+++....+....|.+.+ .|+-+|++.+++.+-++++ .-||......+++-|...|.
T Consensus 1139 Vi~~a~~~~~~edLv~yL~MaRkk~~E~~id~--eLi~AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~ 1209 (1666)
T KOG0985|consen 1139 VIDVASRTGKYEDLVKYLLMARKKVREPYIDS--ELIFAYAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKM 1209 (1666)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHhhcCccchH--HHHHHHHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhh
Confidence 99999999999999999988888766666655 6888999998887765543 35787788888888888898
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH------------------------cCCCCCHH
Q 003829 689 MKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIK------------------------QGCKPNQN 744 (793)
Q Consensus 689 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------------------------~~~~p~~~ 744 (793)
++.|.-+|.... .|..|+..+...|+++.|.+..+++-. .++...+.
T Consensus 1210 y~aAkl~y~~vS---------N~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhad 1280 (1666)
T KOG0985|consen 1210 YEAAKLLYSNVS---------NFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHAD 1280 (1666)
T ss_pred hHHHHHHHHHhh---------hHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehH
Confidence 888887775543 366777777777777777665554321 11112234
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhCC
Q 003829 745 TYNSIVDGYCKLNQRYEAITFVNNLSKLD 773 (793)
Q Consensus 745 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 773 (793)
-...|+..|...|-++|-+.+++..+-+.
T Consensus 1281 eLeeli~~Yq~rGyFeElIsl~Ea~LGLE 1309 (1666)
T KOG0985|consen 1281 ELEELIEYYQDRGYFEELISLLEAGLGLE 1309 (1666)
T ss_pred hHHHHHHHHHhcCcHHHHHHHHHhhhchh
Confidence 45567777777788888887777766553
No 74
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=7.3e-08 Score=92.30 Aligned_cols=308 Identities=13% Similarity=0.058 Sum_probs=195.9
Q ss_pred CCCHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHH
Q 003829 381 TPDVFTYTTLLSGFE--KAGKDESAMKVFEEMRSA-GCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPD-IVT 456 (793)
Q Consensus 381 ~~~~~~~~~li~~~~--~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~ 456 (793)
.|+..+....+.+++ -.++...|...+-.+... -++.|......+.+.+...|+.++|+..|+.....+ |+ ...
T Consensus 191 ~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d--py~i~~ 268 (564)
T KOG1174|consen 191 PDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN--PDNVEA 268 (564)
T ss_pred CCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC--hhhhhh
Confidence 333333333343333 234444444443333222 245566677777777777777777777777765432 22 222
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 003829 457 WNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALAR 536 (793)
Q Consensus 457 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 536 (793)
.....-.+.+.|+.++...+...+....- -....|..-+......++++.|+.+-++.++.... +...|-.-...+..
T Consensus 269 MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~-~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~ 346 (564)
T KOG1174|consen 269 MDLYAVLLGQEGGCEQDSALMDYLFAKVK-YTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIA 346 (564)
T ss_pred HHHHHHHHHhccCHhhHHHHHHHHHhhhh-cchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHh
Confidence 22333444566777777777666654321 12233333344455667888888888888776443 44555545567788
Q ss_pred cCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCCCHHHHHHHH-HHHH-
Q 003829 537 GGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSERAFLELKKKGFSPDIPTLNAMI-SIYG- 614 (793)
Q Consensus 537 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~- 614 (793)
.|+.++|.-.|+..+... +-+...|..|+.+|...|++.+|..+.+..+. . ++.+..++..+. ..+.
T Consensus 347 ~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~-----~-----~~~sA~~LtL~g~~V~~~ 415 (564)
T KOG1174|consen 347 LERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIR-----L-----FQNSARSLTLFGTLVLFP 415 (564)
T ss_pred ccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHH-----H-----hhcchhhhhhhcceeecc
Confidence 888999988888877542 33778889999999988998888877665432 1 223344444442 2222
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 003829 615 RRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASR 694 (793)
Q Consensus 615 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 694 (793)
...--++|..++++..+.. |.-....+.+...+...|..+.++.++++.... .||....+.|+..+...+.+++|.+
T Consensus 416 dp~~rEKAKkf~ek~L~~~-P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~ 492 (564)
T KOG1174|consen 416 DPRMREKAKKFAEKSLKIN-PIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAME 492 (564)
T ss_pred CchhHHHHHHHHHhhhccC-CccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHH
Confidence 2233577888888877653 223445677778888889999999999988874 6788888899999988899999999
Q ss_pred HHHHHHHCCCCCCH
Q 003829 695 IFSEMRDSGLVPDV 708 (793)
Q Consensus 695 ~~~~~~~~~~~p~~ 708 (793)
.|..++. +.|+.
T Consensus 493 ~y~~ALr--~dP~~ 504 (564)
T KOG1174|consen 493 YYYKALR--QDPKS 504 (564)
T ss_pred HHHHHHh--cCccc
Confidence 9988888 55543
No 75
>PRK12370 invasion protein regulator; Provisional
Probab=99.36 E-value=6.3e-10 Score=121.05 Aligned_cols=250 Identities=12% Similarity=-0.022 Sum_probs=166.3
Q ss_pred CChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 003829 187 GKVSVAASLLHGLHKDGFDIDVYAYTSLITTYAS---------NGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMG 257 (793)
Q Consensus 187 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g 257 (793)
+.+++|.++|+++++..+. +...|..+..++.. .+++++|...++++.+.++ .+..++..+...+...|
T Consensus 275 ~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP-~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDH-NNPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcc
Confidence 4578888888888887554 56667666665542 2347888888888887753 36677778878888888
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 003829 258 MPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVL 337 (793)
Q Consensus 258 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 337 (793)
++++|...+++..+.++. +...+..+...+...|++++|...+++..+.... +...+..++..+...|++++|...+
T Consensus 353 -~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 353 -EYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLG 429 (553)
T ss_pred -CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHH
Confidence 788888888888877543 4566777777888888888888888888877322 2223334444566678888888888
Q ss_pred HHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-C
Q 003829 338 REMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPD-VFTYTTLLSGFEKAGKDESAMKVFEEMRSAG-C 415 (793)
Q Consensus 338 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~ 415 (793)
++......+.+...+..+..++...|++++|.+.++++... .|+ ....+.+...|+..| +.|...++.+.+.. .
T Consensus 430 ~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~ 505 (553)
T PRK12370 430 DELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQR 505 (553)
T ss_pred HHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhH
Confidence 88776532224455777788888888888888888887654 333 334444555666666 47777676665431 1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003829 416 KPNICTFNALIKMHGNRGNFVEMMKVFDEINKC 448 (793)
Q Consensus 416 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 448 (793)
.+....+ +...|.-.|+-+.+..+ +++.+.
T Consensus 506 ~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 506 IDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred hhcCchH--HHHHHHHHhhhHHHHHH-HHhhcc
Confidence 1111112 44445556666666555 666654
No 76
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.36 E-value=1.2e-07 Score=95.25 Aligned_cols=155 Identities=10% Similarity=0.067 Sum_probs=95.9
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH--------HHhcCCCCCCHhhHHHHHHHHHcCCCH
Q 003829 504 SFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFA--------EMKGGRCKPNELTYSSLLHAYANGREI 575 (793)
Q Consensus 504 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~--------~~~~~~~~p~~~~~~~l~~~~~~~~~~ 575 (793)
.+..+.+++....+....-...+....+......|+++.|.+++. .+.+.+.. +.+...+...+.+.++-
T Consensus 356 ~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~--P~~V~aiv~l~~~~~~~ 433 (652)
T KOG2376|consen 356 KHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHL--PGTVGAIVALYYKIKDN 433 (652)
T ss_pred HHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccC--hhHHHHHHHHHHhccCC
Confidence 466777777777665443334555666677788899999988888 44443333 33445555666666666
Q ss_pred HHHHHHHHHHHhHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHH
Q 003829 576 DQMLALSEEIYSERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFA 655 (793)
Q Consensus 576 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 655 (793)
+.|..++.+.+... .....+-..-..++......-.+.|+.++|..+++++.+.. ++|..+...++.+|++. +++
T Consensus 434 ~~a~~vl~~Ai~~~---~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~e 508 (652)
T KOG2376|consen 434 DSASAVLDSAIKWW---RKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPE 508 (652)
T ss_pred ccHHHHHHHHHHHH---HHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHH
Confidence 66776666554311 11111111111233333344456688888888888888864 67888888888888877 677
Q ss_pred HHHHHHHHHH
Q 003829 656 RAEDVLREIL 665 (793)
Q Consensus 656 ~A~~~~~~~~ 665 (793)
+|+.+-+.+.
T Consensus 509 ka~~l~k~L~ 518 (652)
T KOG2376|consen 509 KAESLSKKLP 518 (652)
T ss_pred HHHHHhhcCC
Confidence 7777655543
No 77
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.35 E-value=6.2e-10 Score=108.04 Aligned_cols=203 Identities=9% Similarity=0.050 Sum_probs=148.8
Q ss_pred HhhHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 003829 559 ELTYSSLLHAYANGREIDQMLALSEEIYSERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSL 638 (793)
Q Consensus 559 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 638 (793)
...+..+...+...|++++|...+++.+. . .+.+...+..+...+...|++++|.+.+++..+.. +.+.
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~---------~-~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~ 99 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALE---------H-DPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNG 99 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH---------h-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCH
Confidence 34455555666666667766666655432 1 12345566667777778888888888888877764 4566
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003829 639 TTYNTLMYMYSRSENFARAEDVLREILAKGI-KPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVAS 717 (793)
Q Consensus 639 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 717 (793)
..+..+...+...|++++|.+.++++..... ......+..+..++...|++++|...+++..+.... +...+..++..
T Consensus 100 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~ 178 (234)
T TIGR02521 100 DVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAEL 178 (234)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHH
Confidence 6777788888888999999999988886422 223456777888889999999999999998884322 45678888889
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCC
Q 003829 718 YAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDP 774 (793)
Q Consensus 718 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 774 (793)
+...|++++|...++++.+. .+.+...+..++..+...|+.++|..+.+.+.+..|
T Consensus 179 ~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 179 YYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLFP 234 (234)
T ss_pred HHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence 99999999999999998875 234566677778888889999999998888776543
No 78
>PRK12370 invasion protein regulator; Provisional
Probab=99.35 E-value=6.8e-10 Score=120.80 Aligned_cols=268 Identities=10% Similarity=-0.003 Sum_probs=189.2
Q ss_pred CHHHHHHHHHHHH-----HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--------CCHHHHHHHHHHHHhC
Q 003829 207 DVYAYTSLITTYA-----SNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMG--------MPWNKIMALVEGMKSA 273 (793)
Q Consensus 207 ~~~~~~~l~~~~~-----~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g--------~~~~~a~~~~~~~~~~ 273 (793)
+...|...+++.. ..+.+++|+..|++..+..+. +...|..+..++...+ .++++|...+++..+.
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l 333 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL 333 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc
Confidence 4454444444421 124589999999999987422 4556666665544221 1478999999999988
Q ss_pred CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHH
Q 003829 274 GVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYN 353 (793)
Q Consensus 274 ~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 353 (793)
++. +..++..+...+...|++++|...+++..+.+ +.+...+..+...+...|++++|...+++..+.... +...+.
T Consensus 334 dP~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~ 410 (553)
T PRK12370 334 DHN-NPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGI 410 (553)
T ss_pred CCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHH
Confidence 654 67788888888889999999999999999884 335677888899999999999999999999886332 333344
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 003829 354 SLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRG 433 (793)
Q Consensus 354 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 433 (793)
.++..+...|++++|++.++++.....+-+...+..+..++...|+.++|...+.++... ...+....+.+...|+..|
T Consensus 411 ~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g 489 (553)
T PRK12370 411 TKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ-EITGLIAVNLLYAEYCQNS 489 (553)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc-cchhHHHHHHHHHHHhccH
Confidence 455567778999999999999887642334555777888888999999999999987655 2234455666777778777
Q ss_pred CHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcC
Q 003829 434 NFVEMMKVFDEINKCNC-KPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAG 484 (793)
Q Consensus 434 ~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 484 (793)
+.|...++.+.+... .+....+ +-..|.-.|+.+.+..+ +++.+.+
T Consensus 490 --~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 490 --ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred --HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 478887777655321 1222222 44445556666666655 7777654
No 79
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=2.6e-09 Score=105.97 Aligned_cols=156 Identities=17% Similarity=0.143 Sum_probs=89.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcC
Q 003829 609 MISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDI-ISYNTVIFAYCRNG 687 (793)
Q Consensus 609 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g 687 (793)
+..+|.+.++++.|+..|.+.......|+.. .+....+++....+...-. .|.. ...-.=+..+.+.|
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a~~--~pe~A~e~r~kGne~Fk~g 372 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRTPDLL---------SKLKEAEKALKEAERKAYI--NPEKAEEEREKGNEAFKKG 372 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcCHHHH---------HHHHHHHHHHHHHHHHHhh--ChhHHHHHHHHHHHHHhcc
Confidence 3445555666677777766655443232211 1222334444444433322 2221 11122255666777
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHH
Q 003829 688 RMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPN-QNTYNSIVDGYCKLNQRYEAITFV 766 (793)
Q Consensus 688 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~ 766 (793)
++..|.+.|.++++.... |...|...+.+|.+.|.+..|+.-.+..++. .|+ ...|..-+.++....+++.|.+.|
T Consensus 373 dy~~Av~~YteAIkr~P~-Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~al~~mk~ydkAleay 449 (539)
T KOG0548|consen 373 DYPEAVKHYTEAIKRDPE-DARLYSNRAACYLKLGEYPEALKDAKKCIEL--DPNFIKAYLRKGAALRAMKEYDKALEAY 449 (539)
T ss_pred CHHHHHHHHHHHHhcCCc-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777774322 4567777777777777777777777777663 444 556666666666667777777777
Q ss_pred HHHhhCCCCCCH
Q 003829 767 NNLSKLDPHVTK 778 (793)
Q Consensus 767 ~~~~~~~~~~~~ 778 (793)
+++++.+|++.+
T Consensus 450 ~eale~dp~~~e 461 (539)
T KOG0548|consen 450 QEALELDPSNAE 461 (539)
T ss_pred HHHHhcCchhHH
Confidence 777777766544
No 80
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.33 E-value=1.2e-09 Score=112.41 Aligned_cols=242 Identities=18% Similarity=0.255 Sum_probs=139.7
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHC-----CC-CCCHHH-HHHHHHHHHhcCChHHHHHHHHHHhcC-----C-CC
Q 003829 490 DTFNTLISAYSRCGSFDQAMSIYKRMLEA-----GV-TPDLST-YNAVLAALARGGMWEQSEKIFAEMKGG-----R-CK 556 (793)
Q Consensus 490 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~-~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~-~~ 556 (793)
.++..+...|...|+++.|..+++..++. |. .|...+ .+.+...|...+++++|..+|+++... | ..
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 45566777788888888888777776653 21 223333 334667888899999999998887632 1 12
Q ss_pred C-CHhhHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCC-CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhC-
Q 003829 557 P-NELTYSSLLHAYANGREIDQMLALSEEIYSERAFLELKKKG-FSPDI-PTLNAMISIYGRRQMVAKTNEILHFMNDS- 632 (793)
Q Consensus 557 p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 632 (793)
| -..+++.|..+|.+.|++++|...++.+... +.. ..+ ..+.+ ..++.++..+...+++++|..++....+.
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I--~~~--~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~ 355 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEI--YEK--LLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIY 355 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHH--HHH--hhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 2 2346777888899999999999998876641 111 111 12222 23555666677777777777777655432
Q ss_pred --CCCCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHHCC----C--CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003829 633 --GFTPS----LTTYNTLMYMYSRSENFARAEDVLREILAKG----I--KP-DIISYNTVIFAYCRNGRMKEASRIFSEM 699 (793)
Q Consensus 633 --~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~--~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 699 (793)
-+.++ ..+++.|...|...|++++|.++++++++.. . .+ ....++.|...|.+.+++++|.++|.+.
T Consensus 356 ~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~ 435 (508)
T KOG1840|consen 356 LDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEA 435 (508)
T ss_pred HhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHH
Confidence 01111 2345556666666666666666666555320 1 11 1234455555555556666555555554
Q ss_pred HH----CCC-CCCH-HHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003829 700 RD----SGL-VPDV-ITYNTFVASYAADSLFVEALDVVRYMI 735 (793)
Q Consensus 700 ~~----~~~-~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~ 735 (793)
.. .|. .|+. .+|..|+..|...|++++|+++.+.+.
T Consensus 436 ~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 436 KDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 43 122 1222 455566666666666666666555554
No 81
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.32 E-value=5.1e-07 Score=96.25 Aligned_cols=571 Identities=11% Similarity=0.038 Sum_probs=330.2
Q ss_pred CChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHH
Q 003829 187 GKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMAL 266 (793)
Q Consensus 187 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~~a~~~ 266 (793)
++...|+..|-+..+.... -...|..|+..|....+..+|...|++..+.. ..+...+......|.+.. ++++|..+
T Consensus 472 K~~~~al~ali~alrld~~-~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~-~we~a~~I 548 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLDVS-LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEES-TWEEAFEI 548 (1238)
T ss_pred hhHHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccc-cHHHHHHH
Confidence 3466677777666655332 34579999999998889999999999998865 347788999999999998 89999888
Q ss_pred HHHHHhCCCC-CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 003829 267 VEGMKSAGVK-PDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGC 345 (793)
Q Consensus 267 ~~~~~~~~~~-p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 345 (793)
.-..-+.... .-...|..+.-.|.+.+++..|..-|+...+.. +.|...|..+..+|..+|++..|+++|.+...-
T Consensus 549 ~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L-- 625 (1238)
T KOG1127|consen 549 CLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL-- 625 (1238)
T ss_pred HHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--
Confidence 4333322111 011123333345778899999999999998874 347889999999999999999999999988663
Q ss_pred CCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-------HH
Q 003829 346 LPS-IVTYNSLISAYARDGLLEEAMELKTQMVEIG------ITPDVFTYTTLLSGFEKAGKDESAMKVFEE-------MR 411 (793)
Q Consensus 346 ~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~-------~~ 411 (793)
.|+ ...--......+..|++++|++.+......- ..--..++..+...+.-.|-..++..+++. ..
T Consensus 626 rP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l 705 (1238)
T KOG1127|consen 626 RPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSL 705 (1238)
T ss_pred CcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 333 2222334455678899999999998876531 011112232233333333333333333333 22
Q ss_pred HCCCCCCHHHHHHHHHHHH---hcC-C-H-HHHHHHHH-HHHhCC--------------------CCCCHHHHHHHHHHH
Q 003829 412 SAGCKPNICTFNALIKMHG---NRG-N-F-VEMMKVFD-EINKCN--------------------CKPDIVTWNTLLAVF 464 (793)
Q Consensus 412 ~~~~~~~~~~~~~l~~~~~---~~g-~-~-~~A~~~~~-~~~~~~--------------------~~~~~~~~~~l~~~~ 464 (793)
......+...|-.+.+++. ... + + .....++. +....+ ...+..+|..++..|
T Consensus 706 ~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGiny 785 (1238)
T KOG1127|consen 706 IHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINY 785 (1238)
T ss_pred HHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHH
Confidence 2221223333332222211 000 0 0 00000010 111111 112234454444433
Q ss_pred Hh----CC----ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 003829 465 GQ----NG----MDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALAR 536 (793)
Q Consensus 465 ~~----~~----~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 536 (793)
.+ .| +...|+..++..++..- -+..+++.|.-. ...|.+.-|...|-+....... ...+|..+...+.+
T Consensus 786 lr~f~~l~et~~~~~~Ai~c~KkaV~L~a-nn~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~-~~~~W~NlgvL~l~ 862 (1238)
T KOG1127|consen 786 LRYFLLLGETMKDACTAIRCCKKAVSLCA-NNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPT-CHCQWLNLGVLVLE 862 (1238)
T ss_pred HHHHHHcCCcchhHHHHHHHHHHHHHHhh-ccHHHHHHHHHh-hccchhhhhhhhhhhhhhcccc-chhheeccceeEEe
Confidence 32 11 22355666666655422 244455555444 5556777776666655544333 55667777777778
Q ss_pred cCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 003829 537 GGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSERAFLELKKKGFSPDIPTLNAMISIYGRR 616 (793)
Q Consensus 537 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 616 (793)
..+++.|...|...+... +.+...|..........|+.-+...++..-.. --...|--++..-+..........
T Consensus 863 n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~e-----l~~~~gka~~f~Yw~c~te~h~~N 936 (1238)
T KOG1127|consen 863 NQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDE-----LCSKEGKAKKFQYWLCATEIHLQN 936 (1238)
T ss_pred cccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHH-----hhccccccchhhHHHHHHHHHHhc
Confidence 888999999998887642 33566666555555567777666666654211 011222233333333333444555
Q ss_pred CCHHHHHHHHHHHHh---------CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC-CCCCCHHHHHH----HHHH
Q 003829 617 QMVAKTNEILHFMND---------SGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAK-GIKPDIISYNT----VIFA 682 (793)
Q Consensus 617 g~~~~A~~~~~~~~~---------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~----l~~~ 682 (793)
|+.++-+...+.+.. .+.+.+...|...+......+.+..|.....+++.. ..+.+...|+. +...
T Consensus 937 g~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL 1016 (1238)
T KOG1127|consen 937 GNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRL 1016 (1238)
T ss_pred cchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhh
Confidence 665554433333221 144667777888887777788888887777765521 01234445553 3445
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCC-HHHHHHHHHHHHccCCHH
Q 003829 683 YCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQ-GCKPN-QNTYNSIVDGYCKLNQRY 760 (793)
Q Consensus 683 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~ 760 (793)
++..|.++.|..-+...-. ..+......-+ +..-.|+++++.+.|+++..- +-..| ......++.+....|..+
T Consensus 1017 ~lslgefe~A~~a~~~~~~---evdEdi~gt~l-~lFfkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~ 1092 (1238)
T KOG1127|consen 1017 ELSLGEFESAKKASWKEWM---EVDEDIRGTDL-TLFFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKN 1092 (1238)
T ss_pred hhhhcchhhHhhhhcccch---hHHHHHhhhhH-HHHHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccch
Confidence 5666677655444332211 11111111111 124468899999999999752 11223 355677888888999999
Q ss_pred HHHHHHHHHhhCCCCC
Q 003829 761 EAITFVNNLSKLDPHV 776 (793)
Q Consensus 761 ~A~~~~~~~~~~~~~~ 776 (793)
.|...+-++..+.+..
T Consensus 1093 ~A~~lLfe~~~ls~~~ 1108 (1238)
T KOG1127|consen 1093 DAQFLLFEVKSLSKVQ 1108 (1238)
T ss_pred HHHHHHHHHHHhCccc
Confidence 9999999998885543
No 82
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.32 E-value=1.8e-09 Score=104.73 Aligned_cols=199 Identities=12% Similarity=0.023 Sum_probs=103.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 003829 208 VYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLIS 287 (793)
Q Consensus 208 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 287 (793)
...+..++..+...|++++|...|+++.+.. +.+...+..+...+...| ++++|.+.+++..+.... +...+..+..
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~-~~~~A~~~~~~al~~~~~-~~~~~~~~~~ 107 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLG-ELEKAEDSFRRALTLNPN-NGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCC-CHHHHHHHHH
Confidence 3445555555556666666666666555442 123445555555555555 555555555555544322 3334444455
Q ss_pred HHHcCCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHH
Q 003829 288 CCRRGSLHEEAAGVFEEMKLAGF-SPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLE 366 (793)
Q Consensus 288 ~~~~~~~~~~A~~~~~~~~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 366 (793)
.+...|++++|...+++...... ......+..+...+...|++++|...+++..... +.+...+..+...+...|+++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHH
Confidence 55555555666555555554311 1123344445555566666666666666655431 223445555555666666666
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003829 367 EAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMR 411 (793)
Q Consensus 367 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 411 (793)
+|.+.+++..+. .+.+...+..++..+...|+.++|..+.+.+.
T Consensus 187 ~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 187 DARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 666666665554 23334444445555555566666655555443
No 83
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.31 E-value=1.5e-09 Score=111.77 Aligned_cols=245 Identities=17% Similarity=0.161 Sum_probs=182.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhcC-----C-CCCCHhh-HHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHH
Q 003829 524 LSTYNAVLAALARGGMWEQSEKIFAEMKGG-----R-CKPNELT-YSSLLHAYANGREIDQMLALSEEIYSERAFLELKK 596 (793)
Q Consensus 524 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~-~~p~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 596 (793)
..+...+...|...|+++.|..+++...+. | ..|...+ .+.+...|...+++++|+.+|++++.. +.....
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i--~e~~~G 276 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTI--REEVFG 276 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH--HHHhcC
Confidence 455666888999999999999999987643 1 1333333 334777889999999999999998752 122222
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CC-CCCHHH-HHHHHHHHHccCCHHHHHHHHHHHHHC--
Q 003829 597 KGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDS-----GF-TPSLTT-YNTLMYMYSRSENFARAEDVLREILAK-- 667 (793)
Q Consensus 597 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~-~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~-- 667 (793)
...+.-..+++.|...|.+.|++++|...++...+- +. .+.+.. ++.++..++..+++++|..+++...+.
T Consensus 277 ~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~ 356 (508)
T KOG1840|consen 277 EDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYL 356 (508)
T ss_pred CCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence 222223457888888999999999999888776642 21 222222 567778889999999999999977643
Q ss_pred -CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CC--CCC-HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003829 668 -GIKPD----IISYNTVIFAYCRNGRMKEASRIFSEMRDS----GL--VPD-VITYNTFVASYAADSLFVEALDVVRYMI 735 (793)
Q Consensus 668 -~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~--~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 735 (793)
-+.++ ..+++.|...|...|++++|.+++++++.. +. .+. ...++.++..|.+.+++.+|.++|.+.+
T Consensus 357 ~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~ 436 (508)
T KOG1840|consen 357 DAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAK 436 (508)
T ss_pred hhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHH
Confidence 11222 457899999999999999999999999862 11 222 3678999999999999999999988865
Q ss_pred H----cC-CCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHh
Q 003829 736 K----QG-CKPN-QNTYNSIVDGYCKLNQRYEAITFVNNLS 770 (793)
Q Consensus 736 ~----~~-~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 770 (793)
. .| ..|+ ..+|..|+..|.+.|++++|.++.+.+.
T Consensus 437 ~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 437 DIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 3 22 1334 5789999999999999999999998887
No 84
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.27 E-value=1.8e-08 Score=105.52 Aligned_cols=130 Identities=16% Similarity=0.195 Sum_probs=85.6
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003829 640 TYNTLMYMYSRSENFARAEDVLREILAKGIKPD-IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASY 718 (793)
Q Consensus 640 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 718 (793)
++..+...|...|++++|++++++.+.. .|+ +..|..-+..+-..|++++|.+.++.+.+.+.. |-..-+..+..+
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~ 272 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYL 272 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHH
Confidence 3345566677777777777777777775 444 566777777777777888877777777774333 445555566666
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCH------HHH--HHHHHHHHccCCHHHHHHHHHHHhhC
Q 003829 719 AADSLFVEALDVVRYMIKQGCKPNQ------NTY--NSIVDGYCKLNQRYEAITFVNNLSKL 772 (793)
Q Consensus 719 ~~~g~~~~A~~~~~~~~~~~~~p~~------~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~ 772 (793)
.+.|++++|.+.+......+..|.. ..| ...+.+|.+.|++..|...+..+.+.
T Consensus 273 LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 273 LRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKH 334 (517)
T ss_pred HHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 6777777777777777655433321 122 34556677777777777777666654
No 85
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.23 E-value=1.1e-06 Score=90.36 Aligned_cols=56 Identities=18% Similarity=0.226 Sum_probs=29.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003829 319 ALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMV 376 (793)
Q Consensus 319 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 376 (793)
+.|..|.+.|.+.+|.+....-.. ...|......+..++.+..-+++|-++|+++.
T Consensus 620 aaiqlyika~~p~~a~~~a~n~~~--l~~de~il~~ia~alik~elydkagdlfeki~ 675 (1636)
T KOG3616|consen 620 AAIQLYIKAGKPAKAARAALNDEE--LLADEEILEHIAAALIKGELYDKAGDLFEKIH 675 (1636)
T ss_pred HHHHHHHHcCCchHHHHhhcCHHH--hhccHHHHHHHHHHHHhhHHHHhhhhHHHHhh
Confidence 456778888887777654422111 22244444445555555555555555555443
No 86
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.22 E-value=8.5e-09 Score=91.15 Aligned_cols=204 Identities=11% Similarity=0.008 Sum_probs=164.8
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 003829 561 TYSSLLHAYANGREIDQMLALSEEIYSERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTT 640 (793)
Q Consensus 561 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 640 (793)
+...|.-.|...|+...|...+++.++. -+.+..++..+...|-+.|..+.|.+.|++..... +.+..+
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~----------DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdV 105 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEH----------DPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDV 105 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh----------CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccch
Confidence 3445666788888888888888776541 13345688888889999999999999999998875 667888
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Q 003829 641 YNTLMYMYSRSENFARAEDVLREILAKGIKP-DIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPD-VITYNTFVASY 718 (793)
Q Consensus 641 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~ 718 (793)
.|.....+|..|.+++|...|++....-.-+ -..+|..++.|..+.|+.+.|.++|++.++ ..|+ ..+...+....
T Consensus 106 LNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~--~dp~~~~~~l~~a~~~ 183 (250)
T COG3063 106 LNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE--LDPQFPPALLELARLH 183 (250)
T ss_pred hhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH--hCcCCChHHHHHHHHH
Confidence 8999999999999999999999998752222 256888999999999999999999999998 4443 36778888899
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCH
Q 003829 719 AADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTK 778 (793)
Q Consensus 719 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 778 (793)
.+.|++..|..++++....+ .++..+....+..-.+.|+.+.|.++=..+.+.-|...+
T Consensus 184 ~~~~~y~~Ar~~~~~~~~~~-~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e 242 (250)
T COG3063 184 YKAGDYAPARLYLERYQQRG-GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEE 242 (250)
T ss_pred HhcccchHHHHHHHHHHhcc-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHH
Confidence 99999999999999987765 478777777777778889999999988888888887544
No 87
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.19 E-value=1.3e-08 Score=101.13 Aligned_cols=220 Identities=9% Similarity=-0.084 Sum_probs=123.3
Q ss_pred CChHHHHHHHHHHhcCC-CCC--CHhhHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003829 538 GMWEQSEKIFAEMKGGR-CKP--NELTYSSLLHAYANGREIDQMLALSEEIYSERAFLELKKKGFSPDIPTLNAMISIYG 614 (793)
Q Consensus 538 g~~~~A~~~~~~~~~~~-~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 614 (793)
+..+.++.-+.+++... ..| ....|..+...+...|+.++|...|++.+. . -+.+...|+.+...+.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~---------l-~P~~~~a~~~lg~~~~ 109 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALA---------L-RPDMADAYNYLGIYLT 109 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---------c-CCCCHHHHHHHHHHHH
Confidence 34455555555555321 111 123355555556666666666666554432 1 1334566777777777
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 003829 615 RRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASR 694 (793)
Q Consensus 615 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 694 (793)
..|++++|...|++..+.. +.+..+|..++.++...|++++|++.+++..+. .|+..........+...++.++|..
T Consensus 110 ~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~ 186 (296)
T PRK11189 110 QAGNFDAAYEAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKE 186 (296)
T ss_pred HCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHH
Confidence 7777777777777777653 445566666777777777777777777777764 3332211122222344567777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc---C--CCC-CHHHHHHHHHHHHccCCHHHHHHHHHH
Q 003829 695 IFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQ---G--CKP-NQNTYNSIVDGYCKLNQRYEAITFVNN 768 (793)
Q Consensus 695 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~--~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 768 (793)
.|++.... ..|+... ........|+..++ +.++.+.+. . +.| ....|..++..+.+.|++++|+..|++
T Consensus 187 ~l~~~~~~-~~~~~~~---~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~ 261 (296)
T PRK11189 187 NLKQRYEK-LDKEQWG---WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKL 261 (296)
T ss_pred HHHHHHhh-CCccccH---HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 77665542 1222211 12233345555443 244444321 0 111 235677777777888888888888888
Q ss_pred HhhCCCC
Q 003829 769 LSKLDPH 775 (793)
Q Consensus 769 ~~~~~~~ 775 (793)
+++.+|.
T Consensus 262 Al~~~~~ 268 (296)
T PRK11189 262 ALANNVY 268 (296)
T ss_pred HHHhCCc
Confidence 8877764
No 88
>PF13041 PPR_2: PPR repeat family
Probab=99.17 E-value=8.2e-11 Score=80.69 Aligned_cols=49 Identities=47% Similarity=0.858 Sum_probs=25.4
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003829 347 PSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFE 395 (793)
Q Consensus 347 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 395 (793)
||+.+||++|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 3445555555555555555555555555555555555555555555544
No 89
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.17 E-value=2.4e-06 Score=87.89 Aligned_cols=170 Identities=18% Similarity=0.234 Sum_probs=94.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 003829 356 ISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNF 435 (793)
Q Consensus 356 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 435 (793)
+.+......+.+|+.+++.+..... -...|..+...|...|+++.|.++|.+.- .++..|.+|.+.|++
T Consensus 739 ieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccH
Confidence 4455556677777777776665532 22345666677777777777777765532 245566777777777
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 003829 436 VEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRM 515 (793)
Q Consensus 436 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 515 (793)
++|.++-++... .......|-.-..-+-+.|++.+|.++|-... .|+ ..|.+|-+.|..+..+++.++-
T Consensus 808 ~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~k~ 876 (1636)
T KOG3616|consen 808 EDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVEKH 876 (1636)
T ss_pred HHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHHHh
Confidence 777776665432 23334445444555556666666666553221 112 2345556666666655555443
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 003829 516 LEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEM 550 (793)
Q Consensus 516 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 550 (793)
... .-..+...+..-|-..|+...|..-|-+.
T Consensus 877 h~d---~l~dt~~~f~~e~e~~g~lkaae~~flea 908 (1636)
T KOG3616|consen 877 HGD---HLHDTHKHFAKELEAEGDLKAAEEHFLEA 908 (1636)
T ss_pred Chh---hhhHHHHHHHHHHHhccChhHHHHHHHhh
Confidence 221 11234444555556666666666655443
No 90
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.15 E-value=1.8e-07 Score=87.49 Aligned_cols=302 Identities=13% Similarity=0.082 Sum_probs=196.0
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCC
Q 003829 461 LAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLST-YNAVLAALARGGM 539 (793)
Q Consensus 461 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~ 539 (793)
...+...|++.+|+..|...++.+.. +..++..-...|...|+..-|+.-+...++. +||-.. ...-...+.+.|+
T Consensus 45 Gk~lla~~Q~sDALt~yHaAve~dp~-~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK~Ge 121 (504)
T KOG0624|consen 45 GKELLARGQLSDALTHYHAAVEGDPN-NYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLKQGE 121 (504)
T ss_pred HHHHHHhhhHHHHHHHHHHHHcCCch-hHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhhccc
Confidence 34444445555555555554443211 2223333334455555555555555555543 233211 1111234555666
Q ss_pred hHHHHHHHHHHhcCCCCCC--H------------hhHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCCCHHH
Q 003829 540 WEQSEKIFAEMKGGRCKPN--E------------LTYSSLLHAYANGREIDQMLALSEEIYSERAFLELKKKGFSPDIPT 605 (793)
Q Consensus 540 ~~~A~~~~~~~~~~~~~p~--~------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 605 (793)
+++|..-|+.+++...... . ......+..+...|+...++.....+++ -.+.+...
T Consensus 122 le~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llE----------i~~Wda~l 191 (504)
T KOG0624|consen 122 LEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLE----------IQPWDASL 191 (504)
T ss_pred HHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHh----------cCcchhHH
Confidence 6666666666554421100 0 1122234455678899999888776654 23567888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHH----HHHHH--
Q 003829 606 LNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDII----SYNTV-- 679 (793)
Q Consensus 606 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~l-- 679 (793)
+..-..+|...|.+..|+.-++...+.. ..+....-.+...+...|+.+.++...++.++. .||.. .|..+
T Consensus 192 ~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkK 268 (504)
T KOG0624|consen 192 RQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKK 268 (504)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHH
Confidence 8888999999999999998888877664 445666666777888899999999999999884 56632 22211
Q ss_pred -------HHHHHHcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHH
Q 003829 680 -------IFAYCRNGRMKEASRIFSEMRDSGLVPDV---ITYNTFVASYAADSLFVEALDVVRYMIKQGCKPN-QNTYNS 748 (793)
Q Consensus 680 -------~~~~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~ 748 (793)
+....+.++|.++++-.+..++....... ..+..+-.++...|++.+|++...+.++ +.|| ..++..
T Consensus 269 v~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~--~d~~dv~~l~d 346 (504)
T KOG0624|consen 269 VVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD--IDPDDVQVLCD 346 (504)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh--cCchHHHHHHH
Confidence 23446778899999999998884333112 3345556677788999999999999987 5665 888888
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhCCCCCCHHH
Q 003829 749 IVDGYCKLNQRYEAITFVNNLSKLDPHVTKEL 780 (793)
Q Consensus 749 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 780 (793)
-+.+|.-...+|.|+.=|+++.+.++++....
T Consensus 347 RAeA~l~dE~YD~AI~dye~A~e~n~sn~~~r 378 (504)
T KOG0624|consen 347 RAEAYLGDEMYDDAIHDYEKALELNESNTRAR 378 (504)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHhcCcccHHHH
Confidence 88999999999999999999999999887653
No 91
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.15 E-value=5e-06 Score=86.89 Aligned_cols=481 Identities=12% Similarity=0.107 Sum_probs=256.8
Q ss_pred HhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHH
Q 003829 184 GKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKI 263 (793)
Q Consensus 184 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~~a 263 (793)
...|.+++|..++++..+. ..|-..|-..|.+++|+++-+.=.+- . =..||.....-+...+ +.+.|
T Consensus 811 ieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRi--H-Lr~Tyy~yA~~Lear~-Di~~A 877 (1416)
T KOG3617|consen 811 IELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRI--H-LRNTYYNYAKYLEARR-DIEAA 877 (1416)
T ss_pred HHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccce--e-hhhhHHHHHHHHHhhc-cHHHH
Confidence 3567888888888876554 23445566778888887766443221 1 1234544444444445 67777
Q ss_pred HHHHHHHHh----------CCC---------CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003829 264 MALVEGMKS----------AGV---------KPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVY 324 (793)
Q Consensus 264 ~~~~~~~~~----------~~~---------~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~ 324 (793)
++.|++... ..+ .-|...|.--...+-..|+.+.|+.+|...+. |.++++..
T Consensus 878 leyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~ 948 (1416)
T KOG3617|consen 878 LEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIK 948 (1416)
T ss_pred HHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeE
Confidence 777664311 110 01222222222223345666666666655442 45677778
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc-------
Q 003829 325 GKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKA------- 397 (793)
Q Consensus 325 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~------- 397 (793)
|-+|+.++|-++-++- -|..+...+.+.|-..|++.+|...|.+... +...|+.|-..
T Consensus 949 C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIRlcKEnd~~d~L~ 1013 (1416)
T KOG3617|consen 949 CIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIRLCKENDMKDRLA 1013 (1416)
T ss_pred eeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHHHHHhcCHHHHHH
Confidence 8899999999888764 2566777789999999999999999987653 22333322221
Q ss_pred ------C--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH--------HHhC--CCCCCHHHHHH
Q 003829 398 ------G--KDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDE--------INKC--NCKPDIVTWNT 459 (793)
Q Consensus 398 ------g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~--------~~~~--~~~~~~~~~~~ 459 (793)
| +.-.|-++|++. |. -....+..|-+.|.+.+|+++--+ ++.. ....|+...+.
T Consensus 1014 nlal~s~~~d~v~aArYyEe~---g~-----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~R 1085 (1416)
T KOG3617|consen 1014 NLALMSGGSDLVSAARYYEEL---GG-----YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRR 1085 (1416)
T ss_pred HHHhhcCchhHHHHHHHHHHc---ch-----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHH
Confidence 1 222233333332 11 122344567778888777765322 1222 22345667777
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH-CCCCCCHHH----HHHHHHHH
Q 003829 460 LLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLE-AGVTPDLST----YNAVLAAL 534 (793)
Q Consensus 460 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~----~~~l~~~~ 534 (793)
-...++...++++|..++....+. .-.+. +|+...+.-..++-+.|.- ++-.|+... ...+.+.|
T Consensus 1086 cadFF~~~~qyekAV~lL~~ar~~---------~~Alq-lC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c 1155 (1416)
T KOG3617|consen 1086 CADFFENNQQYEKAVNLLCLAREF---------SGALQ-LCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELC 1155 (1416)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHH---------HHHHH-HHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHH
Confidence 778888888889888887665542 11222 3333333333344344422 222334433 44455678
Q ss_pred HhcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHh----HHHHHHHHHCCCCCCHHHHHHHH
Q 003829 535 ARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYS----ERAFLELKKKGFSPDIPTLNAMI 610 (793)
Q Consensus 535 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~ 610 (793)
.++|.+..|-+-|.+.-+. ...+.++.++|+.++..-+.+-... ..+-+.++......+..+.-.++
T Consensus 1156 ~qQG~Yh~AtKKfTQAGdK---------l~AMraLLKSGdt~KI~FFAn~sRqkEiYImAANyLQtlDWq~~pq~mK~I~ 1226 (1416)
T KOG3617|consen 1156 LQQGAYHAATKKFTQAGDK---------LSAMRALLKSGDTQKIRFFANTSRQKEIYIMAANYLQTLDWQDNPQTMKDIE 1226 (1416)
T ss_pred HhccchHHHHHHHhhhhhH---------HHHHHHHHhcCCcceEEEEeeccccceeeeehhhhhhhcccccChHHHhhhH
Confidence 8888888888777665321 1234455566665543211100000 00011223344455555555555
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHH----------H
Q 003829 611 SIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTV----------I 680 (793)
Q Consensus 611 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l----------~ 680 (793)
..|.+...++---.+|....+. ...-|..+-.+ .|-+++|...+.++.+++. ....++.| +
T Consensus 1227 tFYTKgqafd~LanFY~~cAqi----Eiee~q~ydKa---~gAl~eA~kCl~ka~~k~~--~~t~l~~Lq~~~a~vk~~l 1297 (1416)
T KOG3617|consen 1227 TFYTKGQAFDHLANFYKSCAQI----EIEELQTYDKA---MGALEEAAKCLLKAEQKNM--STTGLDALQEDLAKVKVQL 1297 (1416)
T ss_pred hhhhcchhHHHHHHHHHHHHHh----hHHHHhhhhHH---hHHHHHHHHHHHHHHhhcc--hHHHHHHHHHHHHHHHHHH
Confidence 5554443343333333332221 11111111111 2345556666655554321 11122222 2
Q ss_pred HHH-HHcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003829 681 FAY-CRNGRMKEASRIFSEMRDSGLVPD----VITYNTFVASYAADSLFVEALDVVRYMIKQ 737 (793)
Q Consensus 681 ~~~-~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 737 (793)
... .-..+..+..+-...|++.-..|| ...|..||..+....++..|-+.+++|..+
T Consensus 1298 ~~~q~~~eD~~~~i~qc~~lleep~ld~~Ir~~~~~a~lie~~v~~k~y~~AyRal~el~~k 1359 (1416)
T KOG3617|consen 1298 RKLQIMKEDAADGIRQCTTLLEEPILDDIIRCTRLFALLIEDHVSRKNYKPAYRALTELQKK 1359 (1416)
T ss_pred HHHHHhhhhHHHHHHHHHHHhhCcCCCCcchhHHHHHHHHHHHHhhhhccHHHHHHHHHhhc
Confidence 111 111255555666666666433333 367899999999999999999999999875
No 92
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.14 E-value=5.3e-08 Score=96.74 Aligned_cols=95 Identities=13% Similarity=-0.029 Sum_probs=43.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 003829 211 YTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCR 290 (793)
Q Consensus 211 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 290 (793)
|..++..|.+.|++++|+..|++..+..+ .+...|+.+...+...| ++++|.+.|++..+..+. +..++..+..++.
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~~~~g-~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~ 143 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQALALRP-DMADAYNYLGIYLTQAG-NFDAAYEAFDSVLELDPT-YNYAYLNRGIALY 143 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 44444444444555555555544444321 13444444444444444 445555555444443222 2333444444444
Q ss_pred cCCCHHHHHHHHHHHHHC
Q 003829 291 RGSLHEEAAGVFEEMKLA 308 (793)
Q Consensus 291 ~~~~~~~A~~~~~~~~~~ 308 (793)
..|++++|.+.|+...+.
T Consensus 144 ~~g~~~eA~~~~~~al~~ 161 (296)
T PRK11189 144 YGGRYELAQDDLLAFYQD 161 (296)
T ss_pred HCCCHHHHHHHHHHHHHh
Confidence 445555555555444443
No 93
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.12 E-value=1.3e-07 Score=83.81 Aligned_cols=199 Identities=15% Similarity=0.014 Sum_probs=127.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003829 210 AYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCC 289 (793)
Q Consensus 210 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 289 (793)
+...|.-.|...|++..|..-+++.++..+ -+..+|..+...|.+.| ..+.|.+.|++..+..+. +..+.|.....+
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DP-s~~~a~~~~A~~Yq~~G-e~~~A~e~YrkAlsl~p~-~GdVLNNYG~FL 113 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDP-SYYLAHLVRAHYYQKLG-ENDLADESYRKALSLAPN-NGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcC-ChhhHHHHHHHHHhcCCC-ccchhhhhhHHH
Confidence 344556667777777777777777776532 24556777777777777 677777777777665443 556666666677
Q ss_pred HcCCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHH
Q 003829 290 RRGSLHEEAAGVFEEMKLAGF-SPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEA 368 (793)
Q Consensus 290 ~~~~~~~~A~~~~~~~~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 368 (793)
|..|++++|...|++...... .--..+|..+.-+..+.|+.+.|...|++.++. .+....+...+.....+.|++-.|
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~-dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL-DPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh-CcCCChHHHHHHHHHHhcccchHH
Confidence 777777777777777766521 112345666666666777777777777777664 222344566666777777777777
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 003829 369 MELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSA 413 (793)
Q Consensus 369 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 413 (793)
...++.....+. ++..+....|..--..|+.+.+-+.=..+.+.
T Consensus 193 r~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 193 RLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred HHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 777777766654 66666666666666677776666655555443
No 94
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.10 E-value=1.9e-07 Score=85.45 Aligned_cols=290 Identities=13% Similarity=0.124 Sum_probs=134.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHH-HHHHH
Q 003829 212 TSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTL-ISCCR 290 (793)
Q Consensus 212 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~~~~p~~~~~~~l-~~~~~ 290 (793)
++.+..+.+..++++|++++..-.++.+ .+......+..+|.... ++..|...++++-.. .|...-|... ...+.
T Consensus 14 taviy~lI~d~ry~DaI~~l~s~~Er~p-~~rAgLSlLgyCYY~~Q-~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 14 TAVVYRLIRDARYADAIQLLGSELERSP-RSRAGLSLLGYCYYRLQ-EFALAAECYEQLGQL--HPELEQYRLYQAQSLY 89 (459)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHH-HHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence 3444444455555555555555444421 13344444444444444 455555555555443 2222222221 22344
Q ss_pred cCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH--HHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHH
Q 003829 291 RGSLHEEAAGVFEEMKLAGFSPDKVTYNALLD--VYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEA 368 (793)
Q Consensus 291 ~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 368 (793)
+.+.+..|..+...|... ++...-..-+. .....+|+..+..+.++.... -+..+.+.......+.|++++|
T Consensus 90 ~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e---n~Ad~~in~gCllykegqyEaA 163 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE---NEADGQINLGCLLYKEGQYEAA 163 (459)
T ss_pred HhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC---CccchhccchheeeccccHHHH
Confidence 445555555555444321 11111111111 122345555555555554321 1233333334444455555555
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-------------C---------------HH
Q 003829 369 MELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKP-------------N---------------IC 420 (793)
Q Consensus 369 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-------------~---------------~~ 420 (793)
.+-|+...+.|.-.....|+..+ +..+.|+++.|.+...+++++|++. | +.
T Consensus 164 vqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~e 242 (459)
T KOG4340|consen 164 VQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVE 242 (459)
T ss_pred HHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHH
Confidence 55555555543333334444333 2234455555555555555544321 1 11
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003829 421 TFNALIKMHGNRGNFVEMMKVFDEINKCN-CKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAY 499 (793)
Q Consensus 421 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~ 499 (793)
.+|.-...+.+.|+++.|.+.+-.|.-+. ...|++|...+.-.- ..+++-+..+-+.-+.+.++ -...||..++-.|
T Consensus 243 AfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLlly 320 (459)
T KOG4340|consen 243 AFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FPPETFANLLLLY 320 (459)
T ss_pred HhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CChHHHHHHHHHH
Confidence 22333344557777777777777764321 234555554443221 22334444444444555443 3456777777777
Q ss_pred hccCCHHHHHHHHHH
Q 003829 500 SRCGSFDQAMSIYKR 514 (793)
Q Consensus 500 ~~~g~~~~a~~~~~~ 514 (793)
|+..-++.|-.++.+
T Consensus 321 CKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 321 CKNEYFDLAADVLAE 335 (459)
T ss_pred hhhHHHhHHHHHHhh
Confidence 877777777777655
No 95
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=1.9e-06 Score=86.20 Aligned_cols=120 Identities=10% Similarity=-0.024 Sum_probs=81.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 003829 610 ISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRM 689 (793)
Q Consensus 610 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 689 (793)
.+.+.+.|++..|...|.+++... |.|...|..-..+|.+.|++..|+.-.+..++.+ ++....|.-=+.++....+|
T Consensus 365 Gne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~y 442 (539)
T KOG0548|consen 365 GNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEY 442 (539)
T ss_pred HHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHH
Confidence 556778888999999888888876 6778888888888888898888888888887752 22344555556666677788
Q ss_pred HHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCChHHHHHHHHH
Q 003829 690 KEASRIFSEMRDSGLVPDVITY-NTFVASYAADSLFVEALDVVRY 733 (793)
Q Consensus 690 ~~A~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~ 733 (793)
++|.+.|++.++ ..|+..-+ ..+.+++..........++.+.
T Consensus 443 dkAleay~eale--~dp~~~e~~~~~~rc~~a~~~~~~~ee~~~r 485 (539)
T KOG0548|consen 443 DKALEAYQEALE--LDPSNAEAIDGYRRCVEAQRGDETPEETKRR 485 (539)
T ss_pred HHHHHHHHHHHh--cCchhHHHHHHHHHHHHHhhcCCCHHHHHHh
Confidence 888888888888 44554333 3333333332223334444444
No 96
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.01 E-value=2.5e-06 Score=88.58 Aligned_cols=201 Identities=13% Similarity=0.019 Sum_probs=123.1
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCC-CCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003829 172 RGSVIAVLISMLGKEGKVSVAASLLHGLHKDGF-DIDV-YAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVI 249 (793)
Q Consensus 172 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 249 (793)
...++..+...+...|+.+.+...+....+... ..+. .........+...|++++|..++++..+..+ .+...+..
T Consensus 5 ~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P-~~~~a~~~- 82 (355)
T cd05804 5 FALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYP-RDLLALKL- 82 (355)
T ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHH-
Confidence 344566666666667777777666666543322 1222 2333344556678899999999998887642 24444442
Q ss_pred HHHHHh----cCCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003829 250 LNVYGK----MGMPWNKIMALVEGMKSAGVKPDS-YTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVY 324 (793)
Q Consensus 250 l~~~~~----~g~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~ 324 (793)
...+.. .+ ....+.+.++. .....|+. .....+...+...|++++|...+++..+.. +.+...+..+..+|
T Consensus 83 ~~~~~~~~~~~~-~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~ 158 (355)
T cd05804 83 HLGAFGLGDFSG-MRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVL 158 (355)
T ss_pred hHHHHHhccccc-CchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHH
Confidence 222222 23 34444444443 11222332 333445556777888888888888888764 33456677778888
Q ss_pred HhcCChHHHHHHHHHHHHcCC-CCCh--hHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 003829 325 GKCRRPKEAMQVLREMKINGC-LPSI--VTYNSLISAYARDGLLEEAMELKTQMVEI 378 (793)
Q Consensus 325 ~~~g~~~~A~~~~~~~~~~~~-~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 378 (793)
...|++++|...+++...... .++. ..|..+...+...|++++|..++++....
T Consensus 159 ~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~ 215 (355)
T cd05804 159 EMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAP 215 (355)
T ss_pred HHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 888888888888888766422 1222 24556777788888888888888887543
No 97
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.00 E-value=2.8e-06 Score=100.29 Aligned_cols=345 Identities=8% Similarity=-0.032 Sum_probs=214.2
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCC------CCC--HHHHHHHHHHHh
Q 003829 429 HGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGF------IPE--RDTFNTLISAYS 500 (793)
Q Consensus 429 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~------~~~--~~~~~~l~~~~~ 500 (793)
....|+++.+...++.+.......+..........+...|+++++..++....+.-. .+. ......+...+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 445566666666665542111111222223334445567788888777776654211 011 112223334556
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHhcCCC---CC--CHhhHHHHHHHHHc
Q 003829 501 RCGSFDQAMSIYKRMLEAGVTPDL----STYNAVLAALARGGMWEQSEKIFAEMKGGRC---KP--NELTYSSLLHAYAN 571 (793)
Q Consensus 501 ~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~p--~~~~~~~l~~~~~~ 571 (793)
..|+++.|...++...+.....+. ...+.+...+...|++++|...+.+...... .+ ...++..+...+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 788999999999887763111121 2345555667789999999999888764211 11 12344556667788
Q ss_pred CCCHHHHHHHHHHHHhHHHHHHHHHCCCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCC--CHHHHHHH
Q 003829 572 GREIDQMLALSEEIYSERAFLELKKKGFS--P-DIPTLNAMISIYGRRQMVAKTNEILHFMNDSG--FTP--SLTTYNTL 644 (793)
Q Consensus 572 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~--~~~~~~~l 644 (793)
.|+++.|...+++... .....+.. + ....+..+...+...|++++|...+.+..... ..+ ....+..+
T Consensus 544 ~G~~~~A~~~~~~al~-----~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 618 (903)
T PRK04841 544 QGFLQAAYETQEKAFQ-----LIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAML 618 (903)
T ss_pred CCCHHHHHHHHHHHHH-----HHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHH
Confidence 9999999999887654 12222221 1 23345556667788899999999998876531 112 23345556
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCC-CCHHHH-----HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHH
Q 003829 645 MYMYSRSENFARAEDVLREILAKGIK-PDIISY-----NTVIFAYCRNGRMKEASRIFSEMRDSGLVPDV---ITYNTFV 715 (793)
Q Consensus 645 ~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~l~ 715 (793)
...+...|++++|...++++....-. .....+ ...+..+...|+.+.|..++............ ..+..++
T Consensus 619 a~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a 698 (903)
T PRK04841 619 AKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIA 698 (903)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHH
Confidence 67788899999999999988642101 011111 11224455689999999998776542111111 1245677
Q ss_pred HHHHhcCChHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCH
Q 003829 716 ASYAADSLFVEALDVVRYMIKQ----GCKPN-QNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTK 778 (793)
Q Consensus 716 ~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 778 (793)
.++...|++++|...++++.+. |...+ ..++..++.++.+.|+.++|...+.++++.......
T Consensus 699 ~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~g~ 766 (903)
T PRK04841 699 RAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRTGF 766 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCccch
Confidence 8899999999999999998752 32322 456777888899999999999999999998755444
No 98
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.00 E-value=4.5e-06 Score=78.34 Aligned_cols=311 Identities=15% Similarity=0.120 Sum_probs=150.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHh
Q 003829 177 AVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLIT-YNVILNVYGK 255 (793)
Q Consensus 177 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~ll~~~~~ 255 (793)
.-+...+...|++..|+..|..+++.++. +-.++-.-...|...|+-.-|+.-|.+.++. +||-.. --.-...+.+
T Consensus 42 lElGk~lla~~Q~sDALt~yHaAve~dp~-~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK 118 (504)
T KOG0624|consen 42 LELGKELLARGQLSDALTHYHAAVEGDPN-NYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLK 118 (504)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCCch-hHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhh
Confidence 33444455555555666555555544222 2223333344555555555555555555553 344322 1122334455
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCCH--------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003829 256 MGMPWNKIMALVEGMKSAGVKPDS--------------YTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALL 321 (793)
Q Consensus 256 ~g~~~~~a~~~~~~~~~~~~~p~~--------------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li 321 (793)
.| ..++|..-|+.+++....-+. ......+..+...|+...|+.....+++.. +.|...|..-.
T Consensus 119 ~G-ele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Ra 196 (504)
T KOG0624|consen 119 QG-ELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARA 196 (504)
T ss_pred cc-cHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHH
Confidence 55 555555555555554321100 011112223444566666666666666542 34555555556
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Q 003829 322 DVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDE 401 (793)
Q Consensus 322 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 401 (793)
.+|...|++..|+.=++...+. ...+..++..+...+...|+.+.++...++.++. .||...+... |-+ +.
T Consensus 197 kc~i~~~e~k~AI~Dlk~askL-s~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~---YKk---lk 267 (504)
T KOG0624|consen 197 KCYIAEGEPKKAIHDLKQASKL-SQDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPF---YKK---LK 267 (504)
T ss_pred HHHHhcCcHHHHHHHHHHHHhc-cccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHH---HHH---HH
Confidence 6666666666666555554433 2234445555555566666666666666665553 3443221111 111 11
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHhCCChHHHHHHHH
Q 003829 402 SAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVT---WNTLLAVFGQNGMDSEVSGVFK 478 (793)
Q Consensus 402 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~ 478 (793)
+..+.++.|. .....+++.++++..+.+.+......... +..+...+...|++.+|++...
T Consensus 268 Kv~K~les~e----------------~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~ 331 (504)
T KOG0624|consen 268 KVVKSLESAE----------------QAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCK 331 (504)
T ss_pred HHHHHHHHHH----------------HHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHH
Confidence 1111111111 12234555556665555555432212222 2334445555666666666666
Q ss_pred HHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 003829 479 EMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEA 518 (793)
Q Consensus 479 ~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 518 (793)
+.++... .|+.++..-..+|.-...++.|+.-|+.+.+.
T Consensus 332 evL~~d~-~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 332 EVLDIDP-DDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred HHHhcCc-hHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 6665422 13556666666666666666666666666654
No 99
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.99 E-value=1.7e-07 Score=94.35 Aligned_cols=257 Identities=14% Similarity=0.140 Sum_probs=153.3
Q ss_pred HhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHcCCCHHHH
Q 003829 499 YSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQM 578 (793)
Q Consensus 499 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 578 (793)
+.+.|++.+|.-.|+..++.++. +...|..|.......++-..|+..+++..+.. +.+...+..|...|...|.-..|
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHH
Confidence 34445555555555555555443 45555555555555555555555555555432 22444555555555555555555
Q ss_pred HHHHHHHHhHHH-HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH-HHHHhCCCCCCHHHHHHHHHHHHccCCHHH
Q 003829 579 LALSEEIYSERA-FLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEIL-HFMNDSGFTPSLTTYNTLMYMYSRSENFAR 656 (793)
Q Consensus 579 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 656 (793)
+..++.-+.... +......+...+.. .. ..+.....+....++| +...+.+..+|+.+...|.-.|--.|++++
T Consensus 373 l~~L~~Wi~~~p~y~~l~~a~~~~~~~--~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 373 LKMLDKWIRNKPKYVHLVSAGENEDFE--NT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHHhCccchhccccCcccccc--CC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 555554322000 00000000000000 00 0001111122333333 333444445788888888888999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003829 657 AEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDV-ITYNTFVASYAADSLFVEALDVVRYMI 735 (793)
Q Consensus 657 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~ 735 (793)
|.+.|+.+++.. +-|...||.|+-.++...+.++|+..|+++++ +.|.. .+...|+-.|...|.+++|.+.|-.++
T Consensus 449 aiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 449 AVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 999999999852 33577899999999999999999999999999 77764 667788889999999999999988876
Q ss_pred H---cC------CCCCHHHHHHHHHHHHccCCHHHHHH
Q 003829 736 K---QG------CKPNQNTYNSIVDGYCKLNQRYEAIT 764 (793)
Q Consensus 736 ~---~~------~~p~~~~~~~l~~~~~~~g~~~~A~~ 764 (793)
. ++ ..++..+|..|-.++.-.++.|-+.+
T Consensus 526 ~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 526 SMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred HhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 4 21 11123577777777777777664443
No 100
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.99 E-value=1.9e-06 Score=89.43 Aligned_cols=295 Identities=11% Similarity=0.034 Sum_probs=175.6
Q ss_pred hccCCChHHHHHHHHHHHhccCCCCCccchHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH--
Q 003829 143 LGFHKKTDLALDVFEWFRSCCSKDGNLVLRGSVIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYAS-- 220 (793)
Q Consensus 143 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 220 (793)
+...++++.+...+...... .+...............+...|++++|.++++.+....+. +...+.. ...+..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~-~~~~~~~~ 90 (355)
T cd05804 16 LLLGGERPAAAAKAAAAAQA---LAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPR-DLLALKL-HLGAFGLG 90 (355)
T ss_pred HHhcCCcchHHHHHHHHHHH---hccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHH-hHHHHHhc
Confidence 33456667766666665441 1111123344455566777899999999999998877543 5545443 323333
Q ss_pred --cCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHH
Q 003829 221 --NGRYREAVMVFKKMEEEGCKPT-LITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEE 297 (793)
Q Consensus 221 --~g~~~~A~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 297 (793)
.|..+.+...+... ....|+ ......+...+...| ++++|...+++..+.... +...+..+..++...|++++
T Consensus 91 ~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~~~G-~~~~A~~~~~~al~~~p~-~~~~~~~la~i~~~~g~~~e 166 (355)
T cd05804 91 DFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGLEEAG-QYDRAEEAARRALELNPD-DAWAVHAVAHVLEMQGRFKE 166 (355)
T ss_pred ccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHH
Confidence 44555555555441 112333 345556667888889 899999999999987644 56677888889999999999
Q ss_pred HHHHHHHHHHCCC-CCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCChhHH-H--HHHHHHHhcCCHHHHHH
Q 003829 298 AAGVFEEMKLAGF-SPDK--VTYNALLDVYGKCRRPKEAMQVLREMKINGC-LPSIVTY-N--SLISAYARDGLLEEAME 370 (793)
Q Consensus 298 A~~~~~~~~~~g~-~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~-~--~li~~~~~~g~~~~A~~ 370 (793)
|..++++...... .++. ..|..+...+...|++++|..++++...... .+..... + .++.-+...|....+.+
T Consensus 167 A~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~ 246 (355)
T cd05804 167 GIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDR 246 (355)
T ss_pred HHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHH
Confidence 9999999887532 1232 3455788899999999999999999854322 1112111 1 22333334444333322
Q ss_pred H--HHHHHHcCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC---C-----CHHHHHHHHHHHHhcCCHHHH
Q 003829 371 L--KTQMVEIGIT--PDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCK---P-----NICTFNALIKMHGNRGNFVEM 438 (793)
Q Consensus 371 ~--~~~m~~~g~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~---~-----~~~~~~~l~~~~~~~g~~~~A 438 (793)
. +......... ...........++...|+.+.|..+++.+...... - .........-.+...|+.++|
T Consensus 247 w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A 326 (355)
T cd05804 247 WEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATA 326 (355)
T ss_pred HHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHH
Confidence 2 1111111101 11122224556667788888888888887653211 0 111122222334467777777
Q ss_pred HHHHHHHH
Q 003829 439 MKVFDEIN 446 (793)
Q Consensus 439 ~~~~~~~~ 446 (793)
.+.+....
T Consensus 327 ~~~L~~al 334 (355)
T cd05804 327 LELLGPVR 334 (355)
T ss_pred HHHHHHHH
Confidence 77776654
No 101
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.96 E-value=1.8e-06 Score=79.26 Aligned_cols=315 Identities=11% Similarity=0.101 Sum_probs=142.8
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHH-HHHHHH
Q 003829 282 FNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNS-LISAYA 360 (793)
Q Consensus 282 ~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-li~~~~ 360 (793)
+..++..+.+..+++.|++++..-.+.. +.+....+.|..+|....++..|-..++++-.. .|...-|.. -...+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence 4444544555566666666665555442 124445555556666666666666666665442 333333322 234445
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003829 361 RDGLLEEAMELKTQMVEIGITPDVFTYTTLLSG--FEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEM 438 (793)
Q Consensus 361 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~--~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 438 (793)
+.+.+.+|+.+...|... ++...-..-+.+ ....+++..+..++++....| +..+.+.......+.|+++.|
T Consensus 90 ~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaA 163 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAA 163 (459)
T ss_pred HhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHH
Confidence 556666666665555432 122111111222 123455555555555544322 333333344444455666666
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHhccCCHHHHHHHHHH
Q 003829 439 MKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERD----TFNTLISAYSRCGSFDQAMSIYKR 514 (793)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~----~~~~l~~~~~~~g~~~~a~~~~~~ 514 (793)
.+-|+...+-+--.....|+..+. ..+.|++..|+++..+++++|+...+. ...-.+++-. .|+. ..
T Consensus 164 vqkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrs-vgNt---~~---- 234 (459)
T KOG4340|consen 164 VQKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRS-VGNT---LV---- 234 (459)
T ss_pred HHHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhc-ccch---HH----
Confidence 666655544332223344443332 234455555555555555554431111 0000000000 0000 00
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhcCC-CCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHH
Q 003829 515 MLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGR-CKPNELTYSSLLHAYANGREIDQMLALSEEIYSERAFLE 593 (793)
Q Consensus 515 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 593 (793)
|...+ -...+|.-...+.+.|+++.|.+.+.+|.-+. ...|++|...+.-.-.. ++..+..+-+. .
T Consensus 235 lh~Sa---l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~~-~~p~~g~~KLq---------F 301 (459)
T KOG4340|consen 235 LHQSA---LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNMD-ARPTEGFEKLQ---------F 301 (459)
T ss_pred HHHHH---HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhccc-CCccccHHHHH---------H
Confidence 00000 01223333445567788888888887775332 23466666554432222 22222111111 1
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003829 594 LKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHF 628 (793)
Q Consensus 594 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 628 (793)
+.... +--..||..++-.||+..-++-|-.++.+
T Consensus 302 LL~~n-PfP~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 302 LLQQN-PFPPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred HHhcC-CCChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 11111 22345777777778887777777777654
No 102
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.91 E-value=0.00019 Score=76.68 Aligned_cols=525 Identities=13% Similarity=0.106 Sum_probs=248.6
Q ss_pred hcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHH--HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHH
Q 003829 185 KEGKVSVAASLLHGLHKDGFDIDVYAYTSLITT--YASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNK 262 (793)
Q Consensus 185 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~~ 262 (793)
..++|..|.+....+.+..+. . .|..++.+ +.|.|+.++|..+++.....+.. |..|...+-.+|...| ..++
T Consensus 21 d~~qfkkal~~~~kllkk~Pn-~--~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~-~~d~ 95 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPN-A--LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLG-KLDE 95 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCC-c--HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHh-hhhH
Confidence 345666666666665554221 1 22223332 34666666666666665544322 6666666666666666 6667
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-C---------hHH
Q 003829 263 IMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCR-R---------PKE 332 (793)
Q Consensus 263 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g-~---------~~~ 332 (793)
|..+|+...+. .|+..-...+..+|.|.+++.+-.+.--+|-+. ++-+...+-+++..+.+.- . ..-
T Consensus 96 ~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~L 172 (932)
T KOG2053|consen 96 AVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLAL 172 (932)
T ss_pred HHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHH
Confidence 77777666554 344555555666666666665544444444332 2333444334444333321 1 223
Q ss_pred HHHHHHHHHHcC-CCCChhHHHHHHHHHHhcCCHHHHHHHH-HHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003829 333 AMQVLREMKING-CLPSIVTYNSLISAYARDGLLEEAMELK-TQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEM 410 (793)
Q Consensus 333 A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~-~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 410 (793)
|.+.++.+.+.+ ..-+..-.......+-..|++++|++++ ....+.-...+...-+.-+..+...+++.+..++-.++
T Consensus 173 A~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~L 252 (932)
T KOG2053|consen 173 AEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRL 252 (932)
T ss_pred HHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 455555555443 1112222223333445567777777777 33333323334444445556666777777777777777
Q ss_pred HHCCCCCCHHHHHHHHHH----------------HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHH
Q 003829 411 RSAGCKPNICTFNALIKM----------------HGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVS 474 (793)
Q Consensus 411 ~~~~~~~~~~~~~~l~~~----------------~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 474 (793)
..+|.. | |...++. +...+..+...+...+....+.+-.-..+--+..-+..-|+.+++.
T Consensus 253 l~k~~D-d---y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee~~ 328 (932)
T KOG2053|consen 253 LEKGND-D---YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEEML 328 (932)
T ss_pred HHhCCc-c---hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHHHH
Confidence 766532 2 2221111 1122333444444443333211111111112222223456666655
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCC--CHHH---HHHHHHHHHhcCC-----hHHHH
Q 003829 475 GVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTP--DLST---YNAVLAALARGGM-----WEQSE 544 (793)
Q Consensus 475 ~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~---~~~l~~~~~~~g~-----~~~A~ 544 (793)
-.|-+-. |..| .+..=+..|...=..++-..++.......... |... +...+....-.|. -+...
T Consensus 329 ~~y~~kf--g~kp---cc~~Dl~~yl~~l~~~q~~~l~~~l~~~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~ 403 (932)
T KOG2053|consen 329 SYYFKKF--GDKP---CCAIDLNHYLGHLNIDQLKSLMSKLVLADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSIL 403 (932)
T ss_pred HHHHHHh--CCCc---HhHhhHHHhhccCCHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHH
Confidence 4443222 2111 12222222222222233333333332221000 0000 1111111111221 12233
Q ss_pred HHHHHHh---cCC------CCCCHh---------hHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCCCHHHH
Q 003829 545 KIFAEMK---GGR------CKPNEL---------TYSSLLHAYANGREIDQMLALSEEIYSERAFLELKKKGFSPDIPTL 606 (793)
Q Consensus 545 ~~~~~~~---~~~------~~p~~~---------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 606 (793)
.++.+.. +.| .-|+.. +.+.|++.|.+.++... +|+.+. ..+.....-+.|..+-
T Consensus 404 a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~---l~eaI~----LLE~glt~s~hnf~~K 476 (932)
T KOG2053|consen 404 AYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTD---LFEAIT----LLENGLTKSPHNFQTK 476 (932)
T ss_pred HHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHH---HHHHHH----HHHHHhhcCCccHHHH
Confidence 3332221 111 122222 34567788888887762 222221 1111222234456666
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 003829 607 NAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRN 686 (793)
Q Consensus 607 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 686 (793)
..++..|+-.|-+..|.+.|..+.-..+..|..-|- +...+...|++.-+...+....+. +..+..--.-+|....+.
T Consensus 477 LlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~-~~~~~~t~g~~~~~s~~~~~~lkf-y~~~~kE~~eyI~~AYr~ 554 (932)
T KOG2053|consen 477 LLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHL-IFRRAETSGRSSFASNTFNEHLKF-YDSSLKETPEYIALAYRR 554 (932)
T ss_pred HHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHH-HHHHHHhcccchhHHHHHHHHHHH-HhhhhhhhHHHHHHHHHc
Confidence 778899999999999999999887666655554442 334456677888888877777653 222221112223333455
Q ss_pred CCHHHHHHHH---HHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003829 687 GRMKEASRIF---SEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMI 735 (793)
Q Consensus 687 g~~~~A~~~~---~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 735 (793)
|.+.+..++. +++..+...--..+=+..+..++..++.++-...++.|.
T Consensus 555 g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~~~~q~~~~~~~~~ 606 (932)
T KOG2053|consen 555 GAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNADRGTQLLKLLESMK 606 (932)
T ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHhccc
Confidence 6665554432 233221111112334666777777788877777777765
No 103
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.90 E-value=1.1e-05 Score=95.11 Aligned_cols=377 Identities=10% Similarity=0.013 Sum_probs=222.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003829 175 VIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYG 254 (793)
Q Consensus 175 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~ 254 (793)
.+......+...|++.+|.......... ..-..........+...|+++.+..+++.+.......+..........+.
T Consensus 343 lh~raa~~~~~~g~~~~Al~~a~~a~d~--~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~ 420 (903)
T PRK04841 343 LHRAAAEAWLAQGFPSEAIHHALAAGDA--QLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQ 420 (903)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHCCCH--HHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHH
Confidence 3444455566677777666544433211 00011222233445567788877777766532111112222233444445
Q ss_pred hcCCCHHHHHHHHHHHHhCCC------CCC--HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHH
Q 003829 255 KMGMPWNKIMALVEGMKSAGV------KPD--SYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPD----KVTYNALLD 322 (793)
Q Consensus 255 ~~g~~~~~a~~~~~~~~~~~~------~p~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~~~----~~~~~~li~ 322 (793)
..| +++++...++.....-- .+. ......+...+...|++++|...+++....-...+ ....+.+..
T Consensus 421 ~~g-~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~ 499 (903)
T PRK04841 421 SQH-RYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGE 499 (903)
T ss_pred HCC-CHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHH
Confidence 566 78888888877654211 111 11222233445678889999888888766311112 124456666
Q ss_pred HHHhcCChHHHHHHHHHHHHc----CCC-CChhHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC--C-CHHHHHHH
Q 003829 323 VYGKCRRPKEAMQVLREMKIN----GCL-PSIVTYNSLISAYARDGLLEEAMELKTQMVEI----GIT--P-DVFTYTTL 390 (793)
Q Consensus 323 ~~~~~g~~~~A~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~--~-~~~~~~~l 390 (793)
.+...|++++|...+++.... |.. ....++..+...+...|++++|.+.+++.... +.. + ....+..+
T Consensus 500 ~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 579 (903)
T PRK04841 500 VHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIR 579 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHH
Confidence 777889999998888877542 111 11235566677788889999998888776542 221 1 23345555
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHH-----HHH
Q 003829 391 LSGFEKAGKDESAMKVFEEMRSA----GCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNC-KPDIVTW-----NTL 460 (793)
Q Consensus 391 i~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~-----~~l 460 (793)
...+...|++++|...+.+.... +.......+..+...+...|+.++|.+.++....... ......+ ...
T Consensus 580 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~ 659 (903)
T PRK04841 580 AQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVR 659 (903)
T ss_pred HHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHH
Confidence 66677789999998888876542 1111234455566778888999999888887743210 0111111 112
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHhccCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHH
Q 003829 461 LAVFGQNGMDSEVSGVFKEMKRAGFIPE---RDTFNTLISAYSRCGSFDQAMSIYKRMLEA----GVTP-DLSTYNAVLA 532 (793)
Q Consensus 461 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~ 532 (793)
+..+...|+.+.|..++........... ......+...+...|++++|...+++.... |... ...+...+..
T Consensus 660 ~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~ 739 (903)
T PRK04841 660 LIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQ 739 (903)
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 3445567888888888766554221111 112345677788889999999998887653 3222 2345666667
Q ss_pred HHHhcCChHHHHHHHHHHhcCC
Q 003829 533 ALARGGMWEQSEKIFAEMKGGR 554 (793)
Q Consensus 533 ~~~~~g~~~~A~~~~~~~~~~~ 554 (793)
++.+.|+.++|...+.+..+..
T Consensus 740 a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 740 LYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHh
Confidence 8889999999999999987653
No 104
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.89 E-value=0.00013 Score=73.27 Aligned_cols=134 Identities=10% Similarity=0.121 Sum_probs=82.8
Q ss_pred chHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003829 171 LRGSVIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVIL 250 (793)
Q Consensus 171 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll 250 (793)
-+..+|..+++-+... ..+++++.+++++.. ++-+...|..-|....+..+++....+|.+.+.. ..++..|...+
T Consensus 18 ~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--vLnlDLW~lYl 93 (656)
T KOG1914|consen 18 YDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVK--VLNLDLWKLYL 93 (656)
T ss_pred ccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HhhHhHHHHHH
Confidence 4777788888877666 788888888888765 4446777888888888888888888888777655 33566777766
Q ss_pred HHHHhcCCCH----HHHHHHHHH-HHhCCCCCCHH-HHHHHHHH---------HHcCCCHHHHHHHHHHHHHC
Q 003829 251 NVYGKMGMPW----NKIMALVEG-MKSAGVKPDSY-TFNTLISC---------CRRGSLHEEAAGVFEEMKLA 308 (793)
Q Consensus 251 ~~~~~~g~~~----~~a~~~~~~-~~~~~~~p~~~-~~~~l~~~---------~~~~~~~~~A~~~~~~~~~~ 308 (793)
.-..+..... +...+.|+- +.+.|+.+-.. .|+..+.. +....+++..+++++++...
T Consensus 94 ~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~t 166 (656)
T KOG1914|consen 94 SYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVT 166 (656)
T ss_pred HHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcC
Confidence 6554433122 222233332 23345443322 23333322 33344666777788887765
No 105
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.88 E-value=1.1e-07 Score=92.91 Aligned_cols=80 Identities=14% Similarity=0.065 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh-HHHHHHHH
Q 003829 654 FARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLF-VEALDVVR 732 (793)
Q Consensus 654 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~ 732 (793)
+++|.-+|+++.+. +.++..+.+.++.++...|++++|.++++++.+.+.. +..++..++.+....|+. +.+.+++.
T Consensus 183 ~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~~~~~~~~l~ 260 (290)
T PF04733_consen 183 YQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKPTEAAERYLS 260 (290)
T ss_dssp CCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 44455555554432 3334444444444444555555555554444432211 233444444444444443 33334444
Q ss_pred HHH
Q 003829 733 YMI 735 (793)
Q Consensus 733 ~~~ 735 (793)
++.
T Consensus 261 qL~ 263 (290)
T PF04733_consen 261 QLK 263 (290)
T ss_dssp HCH
T ss_pred HHH
Confidence 443
No 106
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.86 E-value=1.2e-07 Score=92.46 Aligned_cols=257 Identities=13% Similarity=0.101 Sum_probs=157.1
Q ss_pred HHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHcCCCHHH
Q 003829 498 AYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQ 577 (793)
Q Consensus 498 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 577 (793)
-+.-.|.+..++.-.+ ........+......+.+++...|+.+.++ .++.+.. .|.......+...+...++-+.
T Consensus 10 n~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~ 84 (290)
T PF04733_consen 10 NQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKES 84 (290)
T ss_dssp HHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHC
T ss_pred HHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHH
Confidence 3444566666665444 222111112333444556677777665433 3333322 4555555444443333333344
Q ss_pred HHHHHHHHHhHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHH
Q 003829 578 MLALSEEIYSERAFLELKKKGFS-PDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFAR 656 (793)
Q Consensus 578 a~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 656 (793)
++.-+++. ...... .+..........+...|++++|+++++.. .+.......+.+|.+.++++.
T Consensus 85 ~l~~l~~~---------~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dl 149 (290)
T PF04733_consen 85 ALEELKEL---------LADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDL 149 (290)
T ss_dssp HHHHHHHC---------CCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHH
T ss_pred HHHHHHHH---------HHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHH
Confidence 43332211 111112 12223333334567788999998887653 467778888899999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHH----HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 003829 657 AEDVLREILAKGIKPDIISYNTVIFAY----CRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVR 732 (793)
Q Consensus 657 A~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 732 (793)
|.+.++.|.+. ..|. +...++.++ ...+.+++|..+|+++.+. ..++..+.+.++.++...|++++|.++++
T Consensus 150 A~k~l~~~~~~--~eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~ 225 (290)
T PF04733_consen 150 AEKELKNMQQI--DEDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLE 225 (290)
T ss_dssp HHHHHHHHHCC--SCCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHH
T ss_pred HHHHHHHHHhc--CCcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 99999999875 3343 333333333 2234799999999998764 45678899999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHccCCH-HHHHHHHHHHhhCCCCCCHH
Q 003829 733 YMIKQGCKPNQNTYNSIVDGYCKLNQR-YEAITFVNNLSKLDPHVTKE 779 (793)
Q Consensus 733 ~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~ 779 (793)
++++.+ +.+..+...++-+....|+. +.+.+++.++...+|+.+-.
T Consensus 226 ~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~ 272 (290)
T PF04733_consen 226 EALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLV 272 (290)
T ss_dssp HHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHH
T ss_pred HHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHH
Confidence 988643 33577877888888888887 67888999999998875443
No 107
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.86 E-value=0.00029 Score=75.38 Aligned_cols=526 Identities=13% Similarity=0.129 Sum_probs=291.9
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH--HhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHH
Q 003829 219 ASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVY--GKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHE 296 (793)
Q Consensus 219 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~--~~~g~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 296 (793)
...+++.+|..-..++.++ .|+.. |..++.++ .+.| ..++|..+++.....+.. |..|...+-..|.+.+..+
T Consensus 20 ld~~qfkkal~~~~kllkk--~Pn~~-~a~vLkaLsl~r~g-k~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d 94 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKK--HPNAL-YAKVLKALSLFRLG-KGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLD 94 (932)
T ss_pred hhhHHHHHHHHHHHHHHHH--CCCcH-HHHHHHHHHHHHhc-CchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhh
Confidence 4677899999999998876 44543 44444444 5778 789999999988877666 8889999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC-C---------HH
Q 003829 297 EAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDG-L---------LE 366 (793)
Q Consensus 297 ~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~---------~~ 366 (793)
+|..+|++..+. .|+......+..+|.+.+++.+-.+.--++-+. .+.+...|=.+++.+.+.- . ..
T Consensus 95 ~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~ 171 (932)
T KOG2053|consen 95 EAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLA 171 (932)
T ss_pred HHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHH
Confidence 999999999887 567777777888899988886655444444332 3334444444455444321 1 23
Q ss_pred HHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH-HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003829 367 EAMELKTQMVEIGITP-DVFTYTTLLSGFEKAGKDESAMKVFE-EMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDE 444 (793)
Q Consensus 367 ~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 444 (793)
-|.+.++.+.+.+.+. +..-...-...+...|++++|.+++. ...+.-...+...-+.-+..+...+++.+..++-.+
T Consensus 172 LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~ 251 (932)
T KOG2053|consen 172 LAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSR 251 (932)
T ss_pred HHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 4556666666654221 22222223344556889999999994 454544455666667778888899999999999888
Q ss_pred HHhCCCCCCHHHHHHHHHHH----------------HhCCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCCHHH
Q 003829 445 INKCNCKPDIVTWNTLLAVF----------------GQNGMDSEVSGVFKEMKRAGFIPERD-TFNTLISAYSRCGSFDQ 507 (793)
Q Consensus 445 ~~~~~~~~~~~~~~~l~~~~----------------~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~l~~~~~~~g~~~~ 507 (793)
+...+. |. |...+..+ ...+..+...+...+....... ++. ...-+...+...|+.++
T Consensus 252 Ll~k~~--Dd--y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~R-gp~LA~lel~kr~~~~gd~ee 326 (932)
T KOG2053|consen 252 LLEKGN--DD--YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSR-GPYLARLELDKRYKLIGDSEE 326 (932)
T ss_pred HHHhCC--cc--hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhccccc-CcHHHHHHHHHHhcccCChHH
Confidence 887752 22 33222211 1112222222222222222111 111 11122222334577776
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHh----h---HHHHHHHHHcCC-----CH
Q 003829 508 AMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNEL----T---YSSLLHAYANGR-----EI 575 (793)
Q Consensus 508 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~----~---~~~l~~~~~~~~-----~~ 575 (793)
+.-.|-+-. |.. ..|..=+..|...=..++-..++...... .++.. . ....+..-.-.| ..
T Consensus 327 ~~~~y~~kf--g~k---pcc~~Dl~~yl~~l~~~q~~~l~~~l~~~--~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~a 399 (932)
T KOG2053|consen 327 MLSYYFKKF--GDK---PCCAIDLNHYLGHLNIDQLKSLMSKLVLA--DDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPA 399 (932)
T ss_pred HHHHHHHHh--CCC---cHhHhhHHHhhccCCHHHHHHHHHHhhcc--CCcchhhHHHHHHHHHHHHHHHHhhccccCCh
Confidence 654443322 211 12222222232222333334444443322 11111 0 111111111112 12
Q ss_pred HHHHHHHHHHHhHHHHHH--HHHCCCCCCHH---------HHHHHHHHHHhcCCHH---HHHHHHHHHHhCCCCCCHHHH
Q 003829 576 DQMLALSEEIYSERAFLE--LKKKGFSPDIP---------TLNAMISIYGRRQMVA---KTNEILHFMNDSGFTPSLTTY 641 (793)
Q Consensus 576 ~~a~~~~~~~~~~~~~~~--~~~~~~~~~~~---------~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~ 641 (793)
+....++.+.... +.. -..+++-|+.. +-+.|++.+.+.++.. +|+-+++...... +.|..+-
T Consensus 400 d~i~a~~~kl~~~--ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s-~hnf~~K 476 (932)
T KOG2053|consen 400 DSILAYVRKLKLT--YEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKS-PHNFQTK 476 (932)
T ss_pred HHHHHHHHHHHHH--HhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC-CccHHHH
Confidence 2222332222110 000 01122222222 3356677888877755 4555555555543 5566667
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 003829 642 NTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAAD 721 (793)
Q Consensus 642 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 721 (793)
..++..|+-.|-+..|.++|+.+--+.+.-|...|.. ..-+...|++..+...++...+. ...+..----+|..-.+.
T Consensus 477 LlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~~-~~~~~t~g~~~~~s~~~~~~lkf-y~~~~kE~~eyI~~AYr~ 554 (932)
T KOG2053|consen 477 LLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHLI-FRRAETSGRSSFASNTFNEHLKF-YDSSLKETPEYIALAYRR 554 (932)
T ss_pred HHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHHH-HHHHHhcccchhHHHHHHHHHHH-HhhhhhhhHHHHHHHHHc
Confidence 7889999999999999999998876666656544432 34455668888888888877762 111111122333334556
Q ss_pred CChHHHHHHH---HHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHh
Q 003829 722 SLFVEALDVV---RYMIKQGCKP-NQNTYNSIVDGYCKLNQRYEAITFVNNLS 770 (793)
Q Consensus 722 g~~~~A~~~~---~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 770 (793)
|.+.+..++. +++... ... -..+-+.+++.++..++.++-...++.+.
T Consensus 555 g~ySkI~em~~fr~rL~~S-~q~~a~~VE~~~l~ll~~~~~~~q~~~~~~~~~ 606 (932)
T KOG2053|consen 555 GAYSKIPEMLAFRDRLMHS-LQKWACRVENLQLSLLCNADRGTQLLKLLESMK 606 (932)
T ss_pred CchhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCCcHHHHHHHHhccc
Confidence 7766654443 233211 111 13445667777888888887777776665
No 108
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.85 E-value=5.4e-07 Score=90.78 Aligned_cols=260 Identities=12% Similarity=0.097 Sum_probs=169.9
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHH
Q 003829 428 MHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQ 507 (793)
Q Consensus 428 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~ 507 (793)
-+.+.|++.+|.-.|+..++.+ +-+...|..|......+++-..|+..+++..+.... |......|...|...|.-..
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHH
Confidence 3557777878777777776654 335667777777777777777777777777766433 55566666666666666666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 003829 508 AMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYS 587 (793)
Q Consensus 508 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 587 (793)
|.+.++.-+...++ |..+. ..+.-+..... +-.++...+..+. ++|-
T Consensus 372 Al~~L~~Wi~~~p~-----y~~l~----~a~~~~~~~~~-------~s~~~~~~l~~i~-------------~~fL---- 418 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPK-----YVHLV----SAGENEDFENT-------KSFLDSSHLAHIQ-------------ELFL---- 418 (579)
T ss_pred HHHHHHHHHHhCcc-----chhcc----ccCccccccCC-------cCCCCHHHHHHHH-------------HHHH----
Confidence 66666665543221 10000 00000000000 0012222222222 1111
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 003829 588 ERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAK 667 (793)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 667 (793)
......+...|..+...|.-.|.-.|.+++|.+.|+.++... |.|...||-|...++...+.++|+..|+++++.
T Consensus 419 ----eaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL 493 (579)
T KOG1125|consen 419 ----EAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQL 493 (579)
T ss_pred ----HHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc
Confidence 122344545778888888888999999999999999999875 778889999999999999999999999999984
Q ss_pred CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC---------CCCCCHHHHHHHHHHHHhcCChHHHHH
Q 003829 668 GIKPD-IISYNTVIFAYCRNGRMKEASRIFSEMRDS---------GLVPDVITYNTFVASYAADSLFVEALD 729 (793)
Q Consensus 668 ~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~p~~~~~~~l~~~~~~~g~~~~A~~ 729 (793)
+|+ +.+...|+-+|...|.+++|.+.|-.++.. +..++..+|.+|=.++.-.++.+-+.+
T Consensus 494 --qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 494 --QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred --CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 777 567788888999999999999999888752 111123456666566666666554443
No 109
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.81 E-value=5.9e-07 Score=86.79 Aligned_cols=171 Identities=15% Similarity=0.128 Sum_probs=134.0
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-H--
Q 003829 600 SPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSL---TTYNTLMYMYSRSENFARAEDVLREILAKGIKPD-I-- 673 (793)
Q Consensus 600 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~-- 673 (793)
......+..++..+...|++++|...|+++.+.. +.+. ..+..+..++...|++++|+..++++.+.. |+ .
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~ 106 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH--PNHPDA 106 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCch
Confidence 3456677888888999999999999999998764 3333 466778899999999999999999999863 32 2
Q ss_pred -HHHHHHHHHHHHc--------CCHHHHHHHHHHHHHCCCCCCHH-HH-----------------HHHHHHHHhcCChHH
Q 003829 674 -ISYNTVIFAYCRN--------GRMKEASRIFSEMRDSGLVPDVI-TY-----------------NTFVASYAADSLFVE 726 (793)
Q Consensus 674 -~~~~~l~~~~~~~--------g~~~~A~~~~~~~~~~~~~p~~~-~~-----------------~~l~~~~~~~g~~~~ 726 (793)
.++..+..++... |++++|.+.|+++.+. .|+.. .+ ..++..|.+.|++++
T Consensus 107 ~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~ 184 (235)
T TIGR03302 107 DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVA 184 (235)
T ss_pred HHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHH
Confidence 2566667777665 7899999999999983 44331 11 245667889999999
Q ss_pred HHHHHHHHHHcCC-CC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCC
Q 003829 727 ALDVVRYMIKQGC-KP-NQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPH 775 (793)
Q Consensus 727 A~~~~~~~~~~~~-~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 775 (793)
|+..++++++..- .| ....+..++.++.+.|++++|..+++.+....|+
T Consensus 185 A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~~ 235 (235)
T TIGR03302 185 AINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYPD 235 (235)
T ss_pred HHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 9999999987421 22 2578889999999999999999999998887663
No 110
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.80 E-value=0.00025 Score=71.35 Aligned_cols=151 Identities=9% Similarity=0.081 Sum_probs=77.7
Q ss_pred hHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCC
Q 003829 540 WEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSERAFLELKKKGFSP-DIPTLNAMISIYGRRQM 618 (793)
Q Consensus 540 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~ 618 (793)
.+....+++++......--..+|..+++...+..-++.|..+|.++ .+.+..+ ++.++++++..+|. ++
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~ka---------R~~~r~~hhVfVa~A~mEy~cs-kD 416 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKA---------REDKRTRHHVFVAAALMEYYCS-KD 416 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHH---------hhccCCcchhhHHHHHHHHHhc-CC
Confidence 3444444444443221112234444555555554555555544332 2333333 45556666665543 55
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHH
Q 003829 619 VAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPD--IISYNTVIFAYCRNGRMKEASRIF 696 (793)
Q Consensus 619 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~ 696 (793)
.+-|.++|+.-.+. +..++.-....++.+...++-..|..+|+++...++.++ ...|..++.--..-|+...+.++-
T Consensus 417 ~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~le 495 (656)
T KOG1914|consen 417 KETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLE 495 (656)
T ss_pred hhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHH
Confidence 56666666655544 233334444555555666666666666666665544444 345666666555666666666665
Q ss_pred HHHHH
Q 003829 697 SEMRD 701 (793)
Q Consensus 697 ~~~~~ 701 (793)
+++..
T Consensus 496 kR~~~ 500 (656)
T KOG1914|consen 496 KRRFT 500 (656)
T ss_pred HHHHH
Confidence 55544
No 111
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.79 E-value=1.7e-06 Score=79.76 Aligned_cols=154 Identities=6% Similarity=0.032 Sum_probs=121.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 003829 610 ISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRM 689 (793)
Q Consensus 610 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 689 (793)
+-.|...|+++.+....+.+... . ..+...++.+++...+++.++.+ +.|...|..++..|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~---~---------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADP---L---------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCc---c---------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCH
Confidence 34678889988875554332211 0 01223667888998999888864 55788999999999999999
Q ss_pred HHHHHHHHHHHHCCCCC-CHHHHHHHHHHH-HhcCC--hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 003829 690 KEASRIFSEMRDSGLVP-DVITYNTFVASY-AADSL--FVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITF 765 (793)
Q Consensus 690 ~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 765 (793)
++|...|+++.+ +.| +...+..++.++ ...|+ .++|.++++++++.+ +.+...+..++..+.+.|++++|+..
T Consensus 90 ~~A~~a~~~Al~--l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~ 166 (198)
T PRK10370 90 DNALLAYRQALQ--LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIEL 166 (198)
T ss_pred HHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999 445 567888888874 67777 599999999999853 33588899999999999999999999
Q ss_pred HHHHhhCCCCCCHH
Q 003829 766 VNNLSKLDPHVTKE 779 (793)
Q Consensus 766 ~~~~~~~~~~~~~~ 779 (793)
++++++..|..+..
T Consensus 167 ~~~aL~l~~~~~~r 180 (198)
T PRK10370 167 WQKVLDLNSPRVNR 180 (198)
T ss_pred HHHHHhhCCCCccH
Confidence 99999998876543
No 112
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.76 E-value=9.1e-07 Score=80.54 Aligned_cols=162 Identities=15% Similarity=0.038 Sum_probs=136.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 003829 607 NAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRN 686 (793)
Q Consensus 607 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 686 (793)
..+...+...|+-+....+........ +.|......++....+.|++.+|...++++.... ++|...|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 666667778888888888887765542 5677777789999999999999999999999863 66789999999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 003829 687 GRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITF 765 (793)
Q Consensus 687 g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 765 (793)
|++++|..-|.+..+ +.| +...++.++..|.-.|+.++|..++......+ .-|..+-..+..+....|++++|..+
T Consensus 148 Gr~~~Ar~ay~qAl~--L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 148 GRFDEARRAYRQALE--LAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred cChhHHHHHHHHHHH--hccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhh
Confidence 999999999999999 444 45788999999999999999999999998653 33677788889899999999999988
Q ss_pred HHHHhhCC
Q 003829 766 VNNLSKLD 773 (793)
Q Consensus 766 ~~~~~~~~ 773 (793)
...-+...
T Consensus 225 ~~~e~~~~ 232 (257)
T COG5010 225 AVQELLSE 232 (257)
T ss_pred ccccccch
Confidence 76655443
No 113
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.75 E-value=5.1e-07 Score=78.52 Aligned_cols=116 Identities=12% Similarity=0.061 Sum_probs=90.7
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003829 658 EDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSLFVEALDVVRYMIK 736 (793)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 736 (793)
..++++.++. .|+ .+..+..++...|++++|...|++++. ..| +...|..++.++...|++++|+..|+++++
T Consensus 13 ~~~~~~al~~--~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 13 EDILKQLLSV--DPE--TVYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHHHc--CHH--HHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 3456666653 344 355677788888999999999999888 444 557888888889999999999999999887
Q ss_pred cCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHH
Q 003829 737 QGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKEL 780 (793)
Q Consensus 737 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 780 (793)
.+ +.+...+..++.++.+.|++++|+..++++++..|++....
T Consensus 87 l~-p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~ 129 (144)
T PRK15359 87 LD-ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWS 129 (144)
T ss_pred cC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHH
Confidence 42 33578888888889999999999999999999988865544
No 114
>PLN02789 farnesyltranstransferase
Probab=98.75 E-value=1e-05 Score=80.15 Aligned_cols=222 Identities=10% Similarity=0.099 Sum_probs=134.7
Q ss_pred hcCChHHHHHHHHHHhcCCCCC-CHhhHHHHHHHHHcCC-CHHHHHHHHHHHHhHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003829 536 RGGMWEQSEKIFAEMKGGRCKP-NELTYSSLLHAYANGR-EIDQMLALSEEIYSERAFLELKKKGFSPDIPTLNAMISIY 613 (793)
Q Consensus 536 ~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 613 (793)
..++.++|+.+..+++.. .| +..+|..-..++...| ++++++..+++++. . .+.+..+|+.....+
T Consensus 49 ~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~---------~-npknyqaW~~R~~~l 116 (320)
T PLN02789 49 SDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAE---------D-NPKNYQIWHHRRWLA 116 (320)
T ss_pred cCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHH---------H-CCcchHHhHHHHHHH
Confidence 345556666666666543 23 3334443333444444 45666665554432 1 122334455444444
Q ss_pred HhcCC--HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc---CC
Q 003829 614 GRRQM--VAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRN---GR 688 (793)
Q Consensus 614 ~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~ 688 (793)
.+.|. .++++.+++++.+.+ +-|..+|+....++...|+++++++.++++++.+.. |...|+.....+.+. |.
T Consensus 117 ~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~ 194 (320)
T PLN02789 117 EKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGG 194 (320)
T ss_pred HHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhcccccc
Confidence 44444 256677777777765 567788888888888888888888888888876533 566777666665544 22
Q ss_pred ----HHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhc----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC--
Q 003829 689 ----MKEASRIFSEMRDSGLVP-DVITYNTFVASYAAD----SLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLN-- 757 (793)
Q Consensus 689 ----~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-- 757 (793)
.+++..+..++++ ..| |...|+.+...+... ++..+|.+++.+..+.+ ..+......|++.|+...
T Consensus 195 ~~~~~e~el~y~~~aI~--~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~~~~~ 271 (320)
T PLN02789 195 LEAMRDSELKYTIDAIL--ANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCEGLQP 271 (320)
T ss_pred ccccHHHHHHHHHHHHH--hCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHhhhcc
Confidence 2467777777777 344 446777777777763 34566888888876632 224667778888887532
Q ss_pred ----------------CHHHHHHHHHHHhhCCC
Q 003829 758 ----------------QRYEAITFVNNLSKLDP 774 (793)
Q Consensus 758 ----------------~~~~A~~~~~~~~~~~~ 774 (793)
..++|.++++.+.+.+|
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~a~~~~~~l~~~d~ 304 (320)
T PLN02789 272 TAEFRDTVDTLAEELSDSTLAQAVCSELEVADP 304 (320)
T ss_pred chhhhhhhhccccccccHHHHHHHHHHHHhhCc
Confidence 34678888888844443
No 115
>PLN02789 farnesyltranstransferase
Probab=98.73 E-value=1.7e-05 Score=78.61 Aligned_cols=206 Identities=11% Similarity=0.048 Sum_probs=133.0
Q ss_pred hcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCC-HHH
Q 003829 185 KEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNG-RYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMP-WNK 262 (793)
Q Consensus 185 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~-~~~ 262 (793)
..++.++|+.+...+++..+. +..+|+....++...| ++++++..++++.+.+++ +..+|+-....+.+.|.. .++
T Consensus 49 ~~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~~~~~ 126 (320)
T PLN02789 49 SDERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPDAANK 126 (320)
T ss_pred cCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCchhhHH
Confidence 456677888888887776544 5567777777777777 578888888888877533 555677665556666621 256
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCh----HHHHH
Q 003829 263 IMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKC---RRP----KEAMQ 335 (793)
Q Consensus 263 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~---g~~----~~A~~ 335 (793)
++.+++++.+.+.+ |..+|.....++.+.|+++++++.++++++.+.. +..+|+....++.+. |.. +++++
T Consensus 127 el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el~ 204 (320)
T PLN02789 127 ELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSELK 204 (320)
T ss_pred HHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHHHH
Confidence 77788788776655 6777777777777778888888888888877533 556666555544443 222 35566
Q ss_pred HHHHHHHcCCCCChhHHHHHHHHHHhc----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 003829 336 VLREMKINGCLPSIVTYNSLISAYARD----GLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEK 396 (793)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 396 (793)
...+++.. .+-|...|+-+...+... +...+|.+.+.+....+ ..+......|+..|+.
T Consensus 205 y~~~aI~~-~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 205 YTIDAILA-NPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHh-CCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 66566554 334666777776666652 33455666666655532 2344555666666654
No 116
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.71 E-value=4e-06 Score=86.98 Aligned_cols=216 Identities=15% Similarity=0.152 Sum_probs=163.8
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHH
Q 003829 490 DTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAY 569 (793)
Q Consensus 490 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 569 (793)
..-..+...+.+.|-...|..+|+++. .|...+.+|+..|+..+|..+..+..+. +|+...|..+.+..
T Consensus 399 q~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~ 467 (777)
T KOG1128|consen 399 QLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVL 467 (777)
T ss_pred hHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhc
Confidence 344567777888888999998887654 5667788888889989999888888773 78888888888887
Q ss_pred HcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 003829 570 ANGREIDQMLALSEEIYSERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYS 649 (793)
Q Consensus 570 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 649 (793)
....-+++|.++.+.... ..-..+.....+.+++.++.+.|+.-.+.+ +--..+|-.+..+..
T Consensus 468 ~d~s~yEkawElsn~~sa----------------rA~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~AL 530 (777)
T KOG1128|consen 468 HDPSLYEKAWELSNYISA----------------RAQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAAL 530 (777)
T ss_pred cChHHHHHHHHHhhhhhH----------------HHHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHH
Confidence 777777888877664321 111122222334688888888888877765 556777878888888
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 003829 650 RSENFARAEDVLREILAKGIKPD-IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEAL 728 (793)
Q Consensus 650 ~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 728 (793)
+.++++.|.+.|...... .|| ...||.+..+|.+.|+-.+|...++++.+.+.. +..+|.+......+.|.+++|+
T Consensus 531 qlek~q~av~aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-~w~iWENymlvsvdvge~eda~ 607 (777)
T KOG1128|consen 531 QLEKEQAAVKAFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-HWQIWENYMLVSVDVGEFEDAI 607 (777)
T ss_pred HHhhhHHHHHHHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-CCeeeechhhhhhhcccHHHHH
Confidence 888899888888888874 454 668899999999999999999999998887643 4566767777778889999998
Q ss_pred HHHHHHHH
Q 003829 729 DVVRYMIK 736 (793)
Q Consensus 729 ~~~~~~~~ 736 (793)
+.+.++.+
T Consensus 608 ~A~~rll~ 615 (777)
T KOG1128|consen 608 KAYHRLLD 615 (777)
T ss_pred HHHHHHHH
Confidence 88888864
No 117
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.69 E-value=1.6e-05 Score=88.32 Aligned_cols=202 Identities=17% Similarity=0.125 Sum_probs=106.2
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 003829 243 LITYNVILNVYGKMGMPWNKIMALVEGMKSA-GVKPD---SYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYN 318 (793)
Q Consensus 243 ~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~-~~~p~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~ 318 (793)
...|-..|......+ +.++|.+++++.+.. ++.-. -..|.++++.-..-|.-+...++|+++.+.. -....|.
T Consensus 1458 Si~WI~YMaf~Lels-EiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~ 1534 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELS-EIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHL 1534 (1710)
T ss_pred chHHHHHHHHHhhhh-hhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHH
Confidence 334444444444444 455555555544432 11111 1134444443334455556666666666541 1234556
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHH
Q 003829 319 ALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPD---VFTYTTLLSGFE 395 (793)
Q Consensus 319 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~li~~~~ 395 (793)
.|...|.+.+.+++|.++|+.|.++ .......|..++..+.+..+-+.|..++.+..+. -|. .....-.+..-.
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHHHh
Confidence 6666666666666666666666555 2234556666666666666666666666665553 222 122223333344
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 003829 396 KAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCK 451 (793)
Q Consensus 396 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 451 (793)
+.|+.+.++.+|+..+... +--...|+..+++-.+.|+.+.+..+|+++...++.
T Consensus 1612 k~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred hcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 5566666666666665542 224455666666666666666666666666555443
No 118
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.67 E-value=1.2e-05 Score=89.31 Aligned_cols=223 Identities=13% Similarity=0.083 Sum_probs=135.3
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHC-CCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHhhHH
Q 003829 488 ERDTFNTLISAYSRCGSFDQAMSIYKRMLEA-GVTP---DLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYS 563 (793)
Q Consensus 488 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 563 (793)
....|...|......++.+.|+++.++++.. ++.- -...|.++++.....|.-+...++|+++.+- ......|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHHH
Confidence 3445666666667777777777777776653 1111 1235666666656666666677777776642 22334566
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHH
Q 003829 564 SLLHAYANGREIDQMLALSEEIYSERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTP--SLTTY 641 (793)
Q Consensus 564 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~ 641 (793)
.|...|.+.+..++|.++++.|+. +.+ ....+|...++.+.++++-++|..++.+..+.- +- .....
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~K--------KF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~l-Pk~eHv~~I 1603 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLK--------KFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSL-PKQEHVEFI 1603 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHH--------Hhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhc-chhhhHHHH
Confidence 666777777777777777666543 222 345567777777777777777777777766541 11 23334
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHH
Q 003829 642 NTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDV--ITYNTFVASYA 719 (793)
Q Consensus 642 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~ 719 (793)
.-.+..-.+.|+.+++..+|+..... .+--...|+.+++.-.++|+.+.++.+|++++..++.|-. ..|..++.---
T Consensus 1604 skfAqLEFk~GDaeRGRtlfEgll~a-yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk 1682 (1710)
T KOG1070|consen 1604 SKFAQLEFKYGDAERGRTLFEGLLSA-YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEK 1682 (1710)
T ss_pred HHHHHHHhhcCCchhhHHHHHHHHhh-CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHH
Confidence 45555556677777777777777765 2334567777777777777777777777777776665532 44455544333
Q ss_pred hcCCh
Q 003829 720 ADSLF 724 (793)
Q Consensus 720 ~~g~~ 724 (793)
..|+-
T Consensus 1683 ~~Gde 1687 (1710)
T KOG1070|consen 1683 SHGDE 1687 (1710)
T ss_pred hcCch
Confidence 44543
No 119
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.67 E-value=6.4e-06 Score=90.12 Aligned_cols=151 Identities=8% Similarity=-0.053 Sum_probs=126.6
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHH
Q 003829 634 FTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPD-IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPD-VITY 711 (793)
Q Consensus 634 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~ 711 (793)
.+.+...+..|.....+.|.+++|+.+++.+.+. .|+ ......++.++.+.+++++|+..+++.++ ..|+ ....
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~ 157 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREI 157 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHH
Confidence 4667889999999999999999999999999985 555 66788889999999999999999999999 4554 5778
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhh
Q 003829 712 NTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKELECKLSDRIAK 790 (793)
Q Consensus 712 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~k 790 (793)
..++.++.+.|++++|+.+|++++..+ +-+..++..++.++.+.|+.++|...|+++++..-. ....|++.+..+.+
T Consensus 158 ~~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~ 234 (694)
T PRK15179 158 LLEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGD-GARKLTRRLVDLNA 234 (694)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCc-chHHHHHHHHHHHH
Confidence 899999999999999999999999732 334888999999999999999999999999988533 34666666665544
No 120
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.66 E-value=1.2e-05 Score=73.27 Aligned_cols=259 Identities=15% Similarity=0.143 Sum_probs=163.3
Q ss_pred HHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHcCCCH
Q 003829 496 ISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREI 575 (793)
Q Consensus 496 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 575 (793)
++-+.-.|.+..++..-....... -+...-..+.++|...|++..... ++.... .|.......+......-++.
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~~---eI~~~~-~~~lqAvr~~a~~~~~e~~~ 88 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVIS---EIKEGK-ATPLQAVRLLAEYLELESNK 88 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHccccccccc---cccccc-CChHHHHHHHHHHhhCcchh
Confidence 445556788888777665554432 234444445566777776544333 333322 33444444444444434443
Q ss_pred HHHHHHHHHHHhHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHH
Q 003829 576 DQMLALSEEIYSERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFA 655 (793)
Q Consensus 576 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 655 (793)
+..+.-..+ .+.......+......-+..|.+.|++++|++..+... +......=+..+.+..+++
T Consensus 89 ~~~~~~l~E--------~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d 154 (299)
T KOG3081|consen 89 KSILASLYE--------LVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFD 154 (299)
T ss_pred HHHHHHHHH--------HHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHH
Confidence 333322221 22333344444444445557889999999998887622 3344444445566777889
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 003829 656 RAEDVLREILAKGIKPDIISYNTVIFAYCR----NGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVV 731 (793)
Q Consensus 656 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 731 (793)
-|.+.+++|.+- . +..+.+.|..++.+ .+.+.+|.-+|++|.+. ..|+..+.+..+.++...|++++|..++
T Consensus 155 ~A~~~lk~mq~i--d-ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL 230 (299)
T KOG3081|consen 155 LAEKELKKMQQI--D-EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLL 230 (299)
T ss_pred HHHHHHHHHHcc--c-hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHH
Confidence 999999999874 2 55566666666643 35789999999999874 5677888889998999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHccCCHHH-HHHHHHHHhhCCCCCCHH
Q 003829 732 RYMIKQGCKPNQNTYNSIVDGYCKLNQRYE-AITFVNNLSKLDPHVTKE 779 (793)
Q Consensus 732 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~~~~~ 779 (793)
+.++.+. ..++.+...++-+-...|+-.+ -.+.+.......|+.+-+
T Consensus 231 ~eaL~kd-~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~v 278 (299)
T KOG3081|consen 231 EEALDKD-AKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPFV 278 (299)
T ss_pred HHHHhcc-CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchHH
Confidence 9998763 3467777666666566666544 456777777777775443
No 121
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.66 E-value=2.6e-06 Score=88.33 Aligned_cols=223 Identities=13% Similarity=0.143 Sum_probs=180.0
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCC
Q 003829 520 VTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSERAFLELKKKGF 599 (793)
Q Consensus 520 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 599 (793)
..|--..-..+...+.+.|-...|..+|+++- .|.-++.+|...|+..+|..+..+- ..-
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~-----------lek 453 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQE-----------LEK 453 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHH-----------hcC
Confidence 34444555667788999999999999998864 3566788999999888888775432 224
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 003829 600 SPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTV 679 (793)
Q Consensus 600 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 679 (793)
+|+...|..+++......-+++|.++.+..... .-..+.......++++++.+.|+.-.+.. +--..+|..+
T Consensus 454 ~~d~~lyc~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~ 525 (777)
T KOG1128|consen 454 DPDPRLYCLLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGL 525 (777)
T ss_pred CCcchhHHHhhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhc
Confidence 788999999999888888889999988765432 21222233344789999999999888763 3357799999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 003829 680 IFAYCRNGRMKEASRIFSEMRDSGLVPDV-ITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQ 758 (793)
Q Consensus 680 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 758 (793)
..+..+.++++.|.+.|..... ..||. ..||++..+|.+.|+-.+|...++++++.+ ..+..+|....-...+.|.
T Consensus 526 G~~ALqlek~q~av~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge 602 (777)
T KOG1128|consen 526 GCAALQLEKEQAAVKAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGE 602 (777)
T ss_pred cHHHHHHhhhHHHHHHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhccc
Confidence 9999999999999999999998 77765 889999999999999999999999999876 4457778777888889999
Q ss_pred HHHHHHHHHHHhhCC
Q 003829 759 RYEAITFVNNLSKLD 773 (793)
Q Consensus 759 ~~~A~~~~~~~~~~~ 773 (793)
+++|++.++++.++.
T Consensus 603 ~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 603 FEDAIKAYHRLLDLR 617 (777)
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999998774
No 122
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.65 E-value=2.8e-05 Score=70.25 Aligned_cols=204 Identities=13% Similarity=0.135 Sum_probs=149.8
Q ss_pred CCCHHHHHHHHHHHHhHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 003829 572 GREIDQMLALSEEIYSERAFLELKKKGFSPDIP-TLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSR 650 (793)
Q Consensus 572 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 650 (793)
..+.++.+++++++.. .+......++.. .|-.+.-+....|+.+-|...++.+...- +.+..+-..-.-.+..
T Consensus 25 ~rnseevv~l~~~~~~-----~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa 98 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLN-----YSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEA 98 (289)
T ss_pred ccCHHHHHHHHHHHHH-----HhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHH
Confidence 3455666666665543 222222445543 34455556667899999999999988763 5455544444444667
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 003829 651 SENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDV 730 (793)
Q Consensus 651 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 730 (793)
.|++++|+++++.+++.+ +-|.+++.--+-..-..|+--+|++-+.+.++. +..|...|.-+...|...|++++|.-.
T Consensus 99 ~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fC 176 (289)
T KOG3060|consen 99 TGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFC 176 (289)
T ss_pred hhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHH
Confidence 899999999999999875 446677777677777788888999888888874 444889999999999999999999999
Q ss_pred HHHHHHcCCCC-CHHHHHHHHHHHHccC---CHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 003829 731 VRYMIKQGCKP-NQNTYNSIVDGYCKLN---QRYEAITFVNNLSKLDPHVTKELECKLS 785 (793)
Q Consensus 731 ~~~~~~~~~~p-~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 785 (793)
+++++- +.| +.-.+..+++.++-.| +.+-|+++|.++++++|.+....|.-.+
T Consensus 177 lEE~ll--~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~l 233 (289)
T KOG3060|consen 177 LEELLL--IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYL 233 (289)
T ss_pred HHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHH
Confidence 999986 455 4666778888877665 5677999999999999977666555443
No 123
>PF12854 PPR_1: PPR repeat
Probab=98.54 E-value=1.1e-07 Score=58.18 Aligned_cols=32 Identities=50% Similarity=0.786 Sum_probs=14.5
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 003829 309 GFSPDKVTYNALLDVYGKCRRPKEAMQVLREM 340 (793)
Q Consensus 309 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 340 (793)
|+.||..+|+.||++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34444444444444444444444444444443
No 124
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.53 E-value=3e-05 Score=70.92 Aligned_cols=160 Identities=16% Similarity=0.097 Sum_probs=129.3
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 003829 563 SSLLHAYANGREIDQMLALSEEIYSERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYN 642 (793)
Q Consensus 563 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 642 (793)
..+-..+...|+-+....+...+ ....+.+.......+....+.|++.+|...+++..... ++|...|+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~----------~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~ 138 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKS----------AIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWN 138 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhh----------hccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhh
Confidence 44555666667666665554321 12234456667778888999999999999999998875 88999999
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 003829 643 TLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADS 722 (793)
Q Consensus 643 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 722 (793)
.+.-+|.+.|+++.|..-|.+..+.. .-+...++.+...|.-.|+.+.|..++......+.. |..+-..|.......|
T Consensus 139 ~lgaaldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g 216 (257)
T COG5010 139 LLGAALDQLGRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQG 216 (257)
T ss_pred HHHHHHHHccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcC
Confidence 99999999999999999999999862 335778899999999999999999999999986443 7788889999999999
Q ss_pred ChHHHHHHHHHHH
Q 003829 723 LFVEALDVVRYMI 735 (793)
Q Consensus 723 ~~~~A~~~~~~~~ 735 (793)
++++|.++...-.
T Consensus 217 ~~~~A~~i~~~e~ 229 (257)
T COG5010 217 DFREAEDIAVQEL 229 (257)
T ss_pred ChHHHHhhccccc
Confidence 9999998887754
No 125
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.52 E-value=1.8e-05 Score=76.47 Aligned_cols=68 Identities=15% Similarity=0.043 Sum_probs=43.5
Q ss_pred chHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 003829 171 LRGSVIAVLISMLGKEGKVSVAASLLHGLHKDGFDI--DVYAYTSLITTYASNGRYREAVMVFKKMEEEG 238 (793)
Q Consensus 171 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 238 (793)
.....+...+..+...|+++.|...|+.+....+.. ...++..+..++...|++++|+..|+++.+..
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~ 100 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH 100 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC
Confidence 355566666666777777777777777766543321 12355666677777777777777777776653
No 126
>PF12854 PPR_1: PPR repeat
Probab=98.52 E-value=1.5e-07 Score=57.56 Aligned_cols=32 Identities=50% Similarity=0.958 Sum_probs=19.3
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003829 344 GCLPSIVTYNSLISAYARDGLLEEAMELKTQM 375 (793)
Q Consensus 344 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 375 (793)
|+.||..+|++||.+||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45566666666666666666666666666555
No 127
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.51 E-value=5.1e-06 Score=72.09 Aligned_cols=115 Identities=12% Similarity=0.164 Sum_probs=86.1
Q ss_pred HHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 003829 660 VLREILAKGIKP-DIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQG 738 (793)
Q Consensus 660 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 738 (793)
.+++++.. .| +......++..+...|++++|.+.|+++.+.+.. +...+..++.++...|++++|...+++.++.+
T Consensus 5 ~~~~~l~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 5 TLKDLLGL--DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPY-NSRYWLGLAACCQMLKEYEEAIDAYALAAALD 81 (135)
T ss_pred hHHHHHcC--ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 44555553 33 3455666777788888888888888888874322 55777888888888888888888888887743
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCH
Q 003829 739 CKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTK 778 (793)
Q Consensus 739 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 778 (793)
+.+...+..++.++...|++++|..+++++++.+|++..
T Consensus 82 -p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 82 -PDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred -CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 335777778888888888888888888888888887655
No 128
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.51 E-value=7.8e-06 Score=71.10 Aligned_cols=121 Identities=10% Similarity=-0.071 Sum_probs=94.3
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 003829 624 EILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSG 703 (793)
Q Consensus 624 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 703 (793)
.++++..+. .|+ .+..+...+...|++++|...|+.+.... +.+...|..++.++...|++++|...|+++.+
T Consensus 14 ~~~~~al~~--~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~-- 86 (144)
T PRK15359 14 DILKQLLSV--DPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALM-- 86 (144)
T ss_pred HHHHHHHHc--CHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--
Confidence 456666554 233 35567778889999999999999998863 44678889999999999999999999999998
Q ss_pred CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHH
Q 003829 704 LVP-DVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPN-QNTYNSIVDGY 753 (793)
Q Consensus 704 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~ 753 (793)
..| +...+..++.++...|++++|+..++.+++. .|+ ...+.....++
T Consensus 87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~--~p~~~~~~~~~~~~~ 136 (144)
T PRK15359 87 LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKM--SYADASWSEIRQNAQ 136 (144)
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHH
Confidence 444 5688899999999999999999999999874 554 55555555443
No 129
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.49 E-value=4.2e-05 Score=84.55 Aligned_cols=175 Identities=11% Similarity=0.111 Sum_probs=90.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH---
Q 003829 605 TLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIF--- 681 (793)
Q Consensus 605 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~--- 681 (793)
.+..++.+|-+.|+.++|..+++++.+.+ +.|+.+.|.++..|... ++++|++++.++...-+ +..-|+.+..
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i--~~kq~~~~~e~W~ 193 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFI--KKKQYVGIEEIWS 193 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHH--hhhcchHHHHHHH
Confidence 44555555555566666666666665554 44555556565555555 56666665555554200 0000000000
Q ss_pred HH--HHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 003829 682 AY--CRNGRMKEASRIFSEMRDS-GLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQ 758 (793)
Q Consensus 682 ~~--~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 758 (793)
-+ +...+++.-.++.+.+..+ |..--..++..+...|....++++++.+++.+++.. +.|......++.+|. ++
T Consensus 194 k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~--~k 270 (906)
T PRK14720 194 KLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD-NKNNKAREELIRFYK--EK 270 (906)
T ss_pred HHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHHH--HH
Confidence 00 1112233334444444432 222223455666677778888999999999999852 335667777887775 44
Q ss_pred HHHHHHHHHHHhhC-CCCCCHHHHHHHHHH
Q 003829 759 RYEAITFVNNLSKL-DPHVTKELECKLSDR 787 (793)
Q Consensus 759 ~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~ 787 (793)
+.. ...+++.++. +..+....+...++.
T Consensus 271 Y~~-~~~~ee~l~~s~l~~~~~~~~~~i~~ 299 (906)
T PRK14720 271 YKD-HSLLEDYLKMSDIGNNRKPVKDCIAD 299 (906)
T ss_pred ccC-cchHHHHHHHhccccCCccHHHHHHH
Confidence 444 5555555544 444443333333333
No 130
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.48 E-value=7.9e-06 Score=75.29 Aligned_cols=125 Identities=10% Similarity=0.116 Sum_probs=105.5
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HHcCC--HHHH
Q 003829 616 RQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAY-CRNGR--MKEA 692 (793)
Q Consensus 616 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~A 692 (793)
.++.+++...++...+.+ +.|...|..+...|...|++++|...|++..+.. +.+...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 567788888888888775 7899999999999999999999999999999974 34678888888874 67777 5999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH
Q 003829 693 SRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQN 744 (793)
Q Consensus 693 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 744 (793)
.++++++++.+.. +..++..++..+.+.|++++|+..++++++. .+|+..
T Consensus 130 ~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l-~~~~~~ 179 (198)
T PRK10370 130 REMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDL-NSPRVN 179 (198)
T ss_pred HHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCcc
Confidence 9999999994433 5688999999999999999999999999986 355543
No 131
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.48 E-value=0.00018 Score=65.72 Aligned_cols=250 Identities=13% Similarity=0.085 Sum_probs=170.9
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 003829 461 LAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMW 540 (793)
Q Consensus 461 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 540 (793)
++-+.-.|.+..++..-....... -+...-..+.++|...|.+.....- ... |-.+.......+...+..-++.
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~~e---I~~-~~~~~lqAvr~~a~~~~~e~~~ 88 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVISE---IKE-GKATPLQAVRLLAEYLELESNK 88 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHcccccccccc---ccc-ccCChHHHHHHHHHHhhCcchh
Confidence 455666778877776655444332 3555566677788888876544332 222 2244555555555555555555
Q ss_pred HHHHHH-HHHHhcCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 003829 541 EQSEKI-FAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSERAFLELKKKGFSPDIPTLNAMISIYGRRQMV 619 (793)
Q Consensus 541 ~~A~~~-~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 619 (793)
++-..- .+.+.......+......-...|...+++++|.+..+. ..+......-...+.+..++
T Consensus 89 ~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~---------------~~~lE~~Al~VqI~lk~~r~ 153 (299)
T KOG3081|consen 89 KSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHL---------------GENLEAAALNVQILLKMHRF 153 (299)
T ss_pred HHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhc---------------cchHHHHHHHHHHHHHHHHH
Confidence 554444 44444443333333334444568899999999987653 12334444445567788899
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 003829 620 AKTNEILHFMNDSGFTPSLTTYNTLMYMYSR----SENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRI 695 (793)
Q Consensus 620 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 695 (793)
+-|...+++|.+- .+..+.+-|..++.+ .+.+.+|.-+|++|.++ ..|+..+.+..+.++...|++++|..+
T Consensus 154 d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~l 229 (299)
T KOG3081|consen 154 DLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESL 229 (299)
T ss_pred HHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHH
Confidence 9999999999874 366777777777754 35689999999999986 688999999999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH-HHHHHHHHH
Q 003829 696 FSEMRDSGLVPDVITYNTFVASYAADSLFVEA-LDVVRYMIK 736 (793)
Q Consensus 696 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 736 (793)
+++++..... ++.+...++.+-...|...++ .+.+.++..
T Consensus 230 L~eaL~kd~~-dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 230 LEEALDKDAK-DPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred HHHHHhccCC-CHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 9999986544 678888888888888887665 455556554
No 132
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.47 E-value=2.3e-06 Score=79.60 Aligned_cols=93 Identities=22% Similarity=0.308 Sum_probs=76.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCC
Q 003829 681 FAYCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPN-QNTYNSIVDGYCKLNQ 758 (793)
Q Consensus 681 ~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 758 (793)
.-..+.++|++|+..|.++++ +.| |.+.|..-..+|++.|.++.|++-.+..+. +.|. ..+|..|+.+|...|+
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~gk 164 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALGK 164 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccCc
Confidence 345677888888888888888 555 557778888888888888888888888887 4565 7788888888888888
Q ss_pred HHHHHHHHHHHhhCCCCCC
Q 003829 759 RYEAITFVNNLSKLDPHVT 777 (793)
Q Consensus 759 ~~~A~~~~~~~~~~~~~~~ 777 (793)
+++|++.|+++++++|++.
T Consensus 165 ~~~A~~aykKaLeldP~Ne 183 (304)
T KOG0553|consen 165 YEEAIEAYKKALELDPDNE 183 (304)
T ss_pred HHHHHHHHHhhhccCCCcH
Confidence 8888888888888888876
No 133
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.47 E-value=3.1e-05 Score=84.93 Aligned_cols=148 Identities=9% Similarity=0.006 Sum_probs=125.9
Q ss_pred ccchHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 003829 169 LVLRGSVIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNV 248 (793)
Q Consensus 169 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 248 (793)
.+.+..++..+..+....|++++|+.+++.+.+..+. +...+..++.++.+.+++++|+..+++.....+. +....+.
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHH
Confidence 4457889999999999999999999999999988555 7888999999999999999999999999987533 6778888
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003829 249 ILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALL 321 (793)
Q Consensus 249 ll~~~~~~g~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li 321 (793)
+..++.+.| ++++|.++|+++...+.. +..++..+..++-+.|+.++|...|+...+.- .+....|+.++
T Consensus 160 ~a~~l~~~g-~~~~A~~~y~~~~~~~p~-~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~ 229 (694)
T PRK15179 160 EAKSWDEIG-QSEQADACFERLSRQHPE-FENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL 229 (694)
T ss_pred HHHHHHHhc-chHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH
Confidence 888999999 999999999999985432 57889999999999999999999999998762 34556665544
No 134
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.40 E-value=0.00015 Score=80.33 Aligned_cols=237 Identities=11% Similarity=0.122 Sum_probs=137.4
Q ss_pred CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 003829 242 TLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTF-NTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNAL 320 (793)
Q Consensus 242 ~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~l 320 (793)
+...+..|+..+...+ ++++|.++.+...+. .|+...+ ..+...+.+.++++.+..+ .+
T Consensus 30 n~~a~~~Li~~~~~~~-~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~ 89 (906)
T PRK14720 30 KFKELDDLIDAYKSEN-LTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL-----------------NL 89 (906)
T ss_pred hHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-----------------hh
Confidence 4557888888887777 788888888866664 3443332 2222245555555444444 22
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 003829 321 LDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKD 400 (793)
Q Consensus 321 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 400 (793)
+.......++.-+..++..|.+. .-+..++..++.+|-+.|+.++|.++++++++.. +-|....|.+...|... ++
T Consensus 90 l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL 165 (906)
T PRK14720 90 IDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DK 165 (906)
T ss_pred hhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hH
Confidence 22233333343333333344432 2244467777888888888888888888888876 45677788888888877 88
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHH
Q 003829 401 ESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEM 480 (793)
Q Consensus 401 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 480 (793)
++|++++.+.+.. |...+++..+.++|.++.... |+ +.+.-..+.+.+
T Consensus 166 ~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~--~~---------------d~d~f~~i~~ki 213 (906)
T PRK14720 166 EKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYN--SD---------------DFDFFLRIERKV 213 (906)
T ss_pred HHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcC--cc---------------cchHHHHHHHHH
Confidence 8888887777654 455556677777777766542 11 111122222222
Q ss_pred HHc-CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003829 481 KRA-GFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALA 535 (793)
Q Consensus 481 ~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 535 (793)
... +..--..++..+-..|...++++++.++++.+.+.... |......++..|.
T Consensus 214 ~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 214 LGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred HhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 221 22223344555555566666666777777666665444 4444555555444
No 135
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.36 E-value=1.9e-05 Score=68.48 Aligned_cols=116 Identities=12% Similarity=0.004 Sum_probs=88.9
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 003829 625 ILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGL 704 (793)
Q Consensus 625 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 704 (793)
.++++.... +.+......++..+...|++++|...++.+...+ +.+...|..+..++...|++++|..+++++.+.+.
T Consensus 5 ~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p 82 (135)
T TIGR02552 5 TLKDLLGLD-SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDP 82 (135)
T ss_pred hHHHHHcCC-hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 455555543 3345556677788888999999999999988763 44677888888999999999999999999888432
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH
Q 003829 705 VPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNT 745 (793)
Q Consensus 705 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 745 (793)
. +...+..++.+|...|++++|+..+++.++. .|+...
T Consensus 83 ~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~ 120 (135)
T TIGR02552 83 D-DPRPYFHAAECLLALGEPESALKALDLAIEI--CGENPE 120 (135)
T ss_pred C-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--ccccch
Confidence 2 4577788888999999999999999998874 455443
No 136
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.36 E-value=2.3e-05 Score=68.60 Aligned_cols=126 Identities=13% Similarity=0.098 Sum_probs=90.5
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHH
Q 003829 641 YNTLMYMYSRSENFARAEDVLREILAKGIKPD---IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDV--ITYNTFV 715 (793)
Q Consensus 641 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~ 715 (793)
|..++..+ ..++..++...++.+.+.. +.+ ......+...+...|++++|...|+.+.+....++. .....|+
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 33344444 3778888888888888762 223 234445667888889999999999999986533322 3556678
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHh
Q 003829 716 ASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLS 770 (793)
Q Consensus 716 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 770 (793)
.++...|++++|+..++..... ......+...+++|.+.|++++|+..|++++
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 8888999999999998774322 2235567788899999999999999998764
No 137
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.35 E-value=0.00076 Score=67.53 Aligned_cols=240 Identities=15% Similarity=0.123 Sum_probs=132.9
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHh---CCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHH
Q 003829 250 LNVYGKMGMPWNKIMALVEGMKS---AGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAG--FSPDKVTYNALLDVY 324 (793)
Q Consensus 250 l~~~~~~g~~~~~a~~~~~~~~~---~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g--~~~~~~~~~~li~~~ 324 (793)
+..+.+.|.+.....++|+++.. .+-.|..+.... =.-..++.+++..-+.+...+ -.|+...+...+.+.
T Consensus 209 i~~L~raGydp~gM~~ff~rl~~~~~~~~~~p~yl~TH----Plp~~RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~ 284 (484)
T COG4783 209 ITTLVRAGYDPQGMPEFFERLADQLRYGGQPPEYLLTH----PLPEERIADLRNRAEQSPPYNKLDSPDFQLARARIRAK 284 (484)
T ss_pred HHHHHHcCCCchhHHHHHHHHHHHHhcCCCCChHHhcC----CCchhHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHH
Confidence 44556667677777777777763 332332211000 001123333443344443221 223444455555443
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 003829 325 GKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAM 404 (793)
Q Consensus 325 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~ 404 (793)
.....-..+-.++.+..+ +.....+.-....+...|++++|+..++.++.. .+-|..........+.+.|+.++|.
T Consensus 285 ~~~~~~~~~~~~~~~~~~---~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~ 360 (484)
T COG4783 285 YEALPNQQAADLLAKRSK---RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAI 360 (484)
T ss_pred hccccccchHHHHHHHhC---ccchHHHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHH
Confidence 333322233333322222 112223333344555677888888888877765 2334444555566777778888888
Q ss_pred HHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 003829 405 KVFEEMRSAGCKPN-ICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRA 483 (793)
Q Consensus 405 ~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 483 (793)
+.++.+... .|+ ....-.+..+|.+.|+..+|+.+++...... +-|+..|..|..+|...|+..++..-..++
T Consensus 361 e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE~--- 434 (484)
T COG4783 361 ERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAEG--- 434 (484)
T ss_pred HHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHHH---
Confidence 888877766 333 5556667777777777777777777766553 556777777777777777766665544433
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 003829 484 GFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEA 518 (793)
Q Consensus 484 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 518 (793)
+...|+++.|...+....+.
T Consensus 435 ---------------~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 435 ---------------YALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred ---------------HHhCCCHHHHHHHHHHHHHh
Confidence 33456677777766666554
No 138
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=98.33 E-value=0.0045 Score=61.38 Aligned_cols=447 Identities=13% Similarity=0.136 Sum_probs=220.0
Q ss_pred HHcCCCHHHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHH--HHH
Q 003829 289 CRRGSLHEEAAGVFEEMKLAGFSPD------KVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLIS--AYA 360 (793)
Q Consensus 289 ~~~~~~~~~A~~~~~~~~~~g~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~--~~~ 360 (793)
+.+.+++.+|.++|.++.+.- ..+ ...-+.++++|.. ++.+.....+.+..+. .| ...|..+.. ...
T Consensus 16 Lqkq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y 90 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQ--FG-KSAYLPLFKALVAY 90 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHh--cC-CchHHHHHHHHHHH
Confidence 447889999999999887652 212 2234566777764 4566666666666553 22 223333333 344
Q ss_pred hcCCHHHHHHHHHHHHHc--CCCC------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCCHHHH
Q 003829 361 RDGLLEEAMELKTQMVEI--GITP------------DVFTYTTLLSGFEKAGKDESAMKVFEEMRSA----GCKPNICTF 422 (793)
Q Consensus 361 ~~g~~~~A~~~~~~m~~~--g~~~------------~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~ 422 (793)
+.|++.+|++.+..-.+. +..+ |-..-+..+.++...|++.+++.+++.+... .+.-+..+|
T Consensus 91 ~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~y 170 (549)
T PF07079_consen 91 KQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMY 170 (549)
T ss_pred HhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHH
Confidence 788999999988877665 3222 1112244567778899999999988887654 344788888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 003829 423 NALIKMHGNRGNFVEMMKVFDEINKCN-CKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSR 501 (793)
Q Consensus 423 ~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 501 (793)
+.++-++.+. .|-++.+.. ...-+. |-.++-.|.+.=.. ++.-.=..+.|....+..++....-
T Consensus 171 d~~vlmlsrS--------YfLEl~e~~s~dl~pd-yYemilfY~kki~~------~d~~~Y~k~~peeeL~s~imqhlfi 235 (549)
T PF07079_consen 171 DRAVLMLSRS--------YFLELKESMSSDLYPD-YYEMILFYLKKIHA------FDQRPYEKFIPEEELFSTIMQHLFI 235 (549)
T ss_pred HHHHHHHhHH--------HHHHHHHhcccccChH-HHHHHHHHHHHHHH------HhhchHHhhCcHHHHHHHHHHHHHh
Confidence 8877666542 222221110 000111 22222222211000 0000000122222222233322221
Q ss_pred cC--CHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCChHHHHHHHHHHhcCCCCC----CHhhHHHHHHHHHcCCC
Q 003829 502 CG--SFDQAMSIYKRMLEAGVTPDLST-YNAVLAALARGGMWEQSEKIFAEMKGGRCKP----NELTYSSLLHAYANGRE 574 (793)
Q Consensus 502 ~g--~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~~~ 574 (793)
.- +..--.++++.-...-+.|+... ...+...+.+ +.+++..+.+.+....+.+ -..++..++....+.++
T Consensus 236 ~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~ 313 (549)
T PF07079_consen 236 VPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQ 313 (549)
T ss_pred CCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11 11111122222222223333222 2222233332 3344444444433221111 12345555556666666
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHCCCCCCHHH-------HHHHHHHHH-hc---CCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 003829 575 IDQMLALSEEIYSERAFLELKKKGFSPDIPT-------LNAMISIYG-RR---QMVAKTNEILHFMNDSGFTPSLTTYNT 643 (793)
Q Consensus 575 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~l~~~~~-~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~ 643 (793)
..+|.+.+.-+.. +.|+... -..+-+..+ .. .+..+=+.+++.....++. .......
T Consensus 314 T~~a~q~l~lL~~-----------ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiD-rqQLvh~ 381 (549)
T PF07079_consen 314 TEEAKQYLALLKI-----------LDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDID-RQQLVHY 381 (549)
T ss_pred HHHHHHHHHHHHh-----------cCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccc-HHHHHHH
Confidence 6666665543221 1221111 111112222 11 1122223344444443321 1111111
Q ss_pred HH---HHHHccCC-HHHHHHHHHHHHHCCCCCCHHHHHHHH----HHHHH---cCCHHHHHHHHHHHHHCCCCC----CH
Q 003829 644 LM---YMYSRSEN-FARAEDVLREILAKGIKPDIISYNTVI----FAYCR---NGRMKEASRIFSEMRDSGLVP----DV 708 (793)
Q Consensus 644 l~---~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~l~----~~~~~---~g~~~~A~~~~~~~~~~~~~p----~~ 708 (793)
|+ .-+-+.|. -++|+++++.+.+-. .-|...-|.+. .+|.. ...+..-.++-+-+.+.|+.| +.
T Consensus 382 L~~~Ak~lW~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~ 460 (549)
T PF07079_consen 382 LVFGAKHLWEIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEE 460 (549)
T ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHH
Confidence 22 22444454 788888888888741 23433333222 22322 123444444445555667766 22
Q ss_pred HHHHHHHHH--HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhC
Q 003829 709 ITYNTFVAS--YAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKL 772 (793)
Q Consensus 709 ~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 772 (793)
..-|.|..+ +..+|++.++.-.-.-+.+ +.|++.+|..++-++....+++||.++++++.-.
T Consensus 461 eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~n 524 (549)
T PF07079_consen 461 EIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKLPPN 524 (549)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCCCc
Confidence 444555554 5578899888877777766 7888899999998888999999999998887654
No 139
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.29 E-value=0.00023 Score=64.53 Aligned_cols=161 Identities=11% Similarity=0.104 Sum_probs=127.8
Q ss_pred cCCHHHHHHHHHHHHhC---C-CCCCHHH-HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 003829 616 RQMVAKTNEILHFMNDS---G-FTPSLTT-YNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMK 690 (793)
Q Consensus 616 ~g~~~~A~~~~~~~~~~---~-~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 690 (793)
..+.++..+++.++... | ..++..+ |..++-+....|+.+-|...++++... ++-+..+-..-+.-+...|+++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhchh
Confidence 45677777777777642 3 4455554 555666677789999999999999976 4333444333344466789999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHh
Q 003829 691 EASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLS 770 (793)
Q Consensus 691 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 770 (793)
+|.++++.+++.+.. |..++..-+.+.-..|+.-+|++-+.+.++. +.-|.+.|.-+...|...|++++|.--+++++
T Consensus 104 ~A~e~y~~lL~ddpt-~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 104 EAIEYYESLLEDDPT-DTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hHHHHHHHHhccCcc-hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 999999999996532 6678888888888999999999999999886 77899999999999999999999999999999
Q ss_pred hCCCCCCHH
Q 003829 771 KLDPHVTKE 779 (793)
Q Consensus 771 ~~~~~~~~~ 779 (793)
-..|.++..
T Consensus 182 l~~P~n~l~ 190 (289)
T KOG3060|consen 182 LIQPFNPLY 190 (289)
T ss_pred HcCCCcHHH
Confidence 999997654
No 140
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.27 E-value=0.00012 Score=73.05 Aligned_cols=138 Identities=17% Similarity=0.106 Sum_probs=77.4
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHH
Q 003829 613 YGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPD-IISYNTVIFAYCRNGRMKE 691 (793)
Q Consensus 613 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~ 691 (793)
+...|++++|+..++.+... .|.|+..+....+.+.+.++..+|.+.++++... .|+ ...+..+..+|.+.|+.++
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHH
Confidence 34455666666666665554 2445555555556666666666666666666654 333 4455555666666666666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhh
Q 003829 692 ASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSK 771 (793)
Q Consensus 692 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 771 (793)
|..+++........ |+..|..|..+|...|+..+|.....+ .|...|++++|+..+..+.+
T Consensus 393 ai~~L~~~~~~~p~-dp~~w~~LAqay~~~g~~~~a~~A~AE------------------~~~~~G~~~~A~~~l~~A~~ 453 (484)
T COG4783 393 AIRILNRYLFNDPE-DPNGWDLLAQAYAELGNRAEALLARAE------------------GYALAGRLEQAIIFLMRASQ 453 (484)
T ss_pred HHHHHHHHhhcCCC-CchHHHHHHHHHHHhCchHHHHHHHHH------------------HHHhCCCHHHHHHHHHHHHH
Confidence 66666665553222 455666666666666655554433322 23345666666666666665
Q ss_pred C
Q 003829 772 L 772 (793)
Q Consensus 772 ~ 772 (793)
.
T Consensus 454 ~ 454 (484)
T COG4783 454 Q 454 (484)
T ss_pred h
Confidence 5
No 141
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.18 E-value=3.2e-05 Score=65.31 Aligned_cols=105 Identities=12% Similarity=0.090 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--CCHHHHHHH
Q 003829 674 ISYNTVIFAYCRNGRMKEASRIFSEMRDSGLV-P-DVITYNTFVASYAADSLFVEALDVVRYMIKQGCK--PNQNTYNSI 749 (793)
Q Consensus 674 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--p~~~~~~~l 749 (793)
.++...+..+.+.|++++|.+.|+++.+.... + ....+..++.++.+.|++++|+..++++....-. ....++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 35566677788888888888888888873221 1 1345667888888888888888888888764211 124567778
Q ss_pred HHHHHccCCHHHHHHHHHHHhhCCCCCCH
Q 003829 750 VDGYCKLNQRYEAITFVNNLSKLDPHVTK 778 (793)
Q Consensus 750 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 778 (793)
+.++.+.|+.++|...++++++..|+++.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRYPGSSA 111 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHCcCChh
Confidence 88888888888888888888888887544
No 142
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.15 E-value=0.00012 Score=64.00 Aligned_cols=126 Identities=13% Similarity=0.128 Sum_probs=95.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC--HHHHHHH
Q 003829 605 TLNAMISIYGRRQMVAKTNEILHFMNDSGFTPS---LTTYNTLMYMYSRSENFARAEDVLREILAKGIKPD--IISYNTV 679 (793)
Q Consensus 605 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l 679 (793)
.|..++..+ ..++...+...++.+.+.. +.+ ....-.+...+...|++++|...|+.+......++ ......+
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 344445444 4788999999999998864 334 22344466778899999999999999998752222 2355667
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 003829 680 IFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYM 734 (793)
Q Consensus 680 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 734 (793)
...+...|++++|+..++......+ ....+...+.+|...|++++|+..|++.
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~~--~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEAF--KALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcch--HHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 8889999999999999977544222 4467789999999999999999999875
No 143
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.13 E-value=0.00017 Score=61.53 Aligned_cols=98 Identities=9% Similarity=0.026 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003829 673 IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVD 751 (793)
Q Consensus 673 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 751 (793)
......+..-+...|++++|.++|+.+.. +.| +..-|..|+.++...|++++|+..|..+...+ +.|+..+-.++.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~--~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~ 111 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTI--YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHH
Confidence 33445566667788888888888888887 444 44667788888888888888888888888743 234777888888
Q ss_pred HHHccCCHHHHHHHHHHHhhCC
Q 003829 752 GYCKLNQRYEAITFVNNLSKLD 773 (793)
Q Consensus 752 ~~~~~g~~~~A~~~~~~~~~~~ 773 (793)
++...|+.++|++.|+.++...
T Consensus 112 c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 112 CYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHcCCHHHHHHHHHHHHHHh
Confidence 8888888888888888888774
No 144
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.13 E-value=0.00012 Score=74.04 Aligned_cols=123 Identities=18% Similarity=0.238 Sum_probs=73.1
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 003829 643 TLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADS 722 (793)
Q Consensus 643 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 722 (793)
.|+..+...++++.|+++++++.+. .|+ ....++..+...++-.+|.+++++.++.... +...+..-+..|.+.+
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~--~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~-d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRER--DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQ-DSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhc--CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcC
Confidence 3444455556666666666666654 233 2334555555666666666666666653221 4455555566666666
Q ss_pred ChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHhhC
Q 003829 723 LFVEALDVVRYMIKQGCKPN-QNTYNSIVDGYCKLNQRYEAITFVNNLSKL 772 (793)
Q Consensus 723 ~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 772 (793)
+++.|+++.+++.+ ..|+ ..+|..|+.+|.+.|++++|...++.+.-.
T Consensus 249 ~~~lAL~iAk~av~--lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 249 KYELALEIAKKAVE--LSPSEFETWYQLAECYIQLGDFENALLALNSCPML 297 (395)
T ss_pred CHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence 66777777776665 3443 556666777777777777776666655533
No 145
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.09 E-value=0.00083 Score=65.47 Aligned_cols=283 Identities=10% Similarity=0.000 Sum_probs=162.2
Q ss_pred HhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHcCCCHHHH
Q 003829 499 YSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQM 578 (793)
Q Consensus 499 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 578 (793)
+.+..++..|+..+..+++..+. +..-|..-...+...|++++|..-.+.-.... +-......-.-+++...++..+|
T Consensus 59 ~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k-d~~~k~~~r~~~c~~a~~~~i~A 136 (486)
T KOG0550|consen 59 FYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRLK-DGFSKGQLREGQCHLALSDLIEA 136 (486)
T ss_pred HHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheecC-CCccccccchhhhhhhhHHHHHH
Confidence 44555566666666666655444 34444444444455555555554444333211 00112222233333333333333
Q ss_pred HHHHHHHHhHHH---H---HHHHH-CCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 003829 579 LALSEEIYSERA---F---LELKK-KGFSPDIPTLNAMIS-IYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSR 650 (793)
Q Consensus 579 ~~~~~~~~~~~~---~---~~~~~-~~~~~~~~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 650 (793)
.+.++.-..... + ..... ..-+|....+..+-. ++.-.|+.++|..+-..+++.+ ..+....-.=..++.-
T Consensus 137 ~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld-~~n~~al~vrg~~~yy 215 (486)
T KOG0550|consen 137 EEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD-ATNAEALYVRGLCLYY 215 (486)
T ss_pred HHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc-cchhHHHHhccccccc
Confidence 333321110000 0 00001 111233344444433 5566889999988887777764 2333332222233445
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHH-------------HHHHHHHHHHcCCHHHHHHHHHHHHHC---CCCCCHHHHHHH
Q 003829 651 SENFARAEDVLREILAKGIKPDIIS-------------YNTVIFAYCRNGRMKEASRIFSEMRDS---GLVPDVITYNTF 714 (793)
Q Consensus 651 ~g~~~~A~~~~~~~~~~~~~~~~~~-------------~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~p~~~~~~~l 714 (793)
.++.++|...|++.+.. .|+... |..=.+-..+.|++.+|.+.|.+.+.. +..++...|...
T Consensus 216 ~~~~~ka~~hf~qal~l--dpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nr 293 (486)
T KOG0550|consen 216 NDNADKAINHFQQALRL--DPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNR 293 (486)
T ss_pred ccchHHHHHHHhhhhcc--ChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHh
Confidence 77899999999999875 454322 222234567889999999999999982 334455678888
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHH
Q 003829 715 VASYAADSLFVEALDVVRYMIKQGCKPN-QNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHV-TKELECKLSDRI 788 (793)
Q Consensus 715 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~l 788 (793)
..+..+.|+..+|+.-.+.+++ +.+. ...+..-+.++...+++++|++-++++.+..-+. ...+.+...-.|
T Consensus 294 a~v~~rLgrl~eaisdc~~Al~--iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aL 367 (486)
T KOG0550|consen 294 ALVNIRLGRLREAISDCNEALK--IDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKDCEIRRTLREAQLAL 367 (486)
T ss_pred HhhhcccCCchhhhhhhhhhhh--cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHH
Confidence 8888999999999999999886 4433 3445555667778899999999999999986652 223444444444
No 146
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.05 E-value=7.4e-05 Score=60.07 Aligned_cols=96 Identities=22% Similarity=0.279 Sum_probs=69.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003829 676 YNTVIFAYCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYC 754 (793)
Q Consensus 676 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 754 (793)
+..++..+...|++++|..+++++.+. .| +...+..++.++...|++++|.+.++...+.+ +.+..++..++..+.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~ 79 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHH
Confidence 455666777778888888888887773 33 33566777777778888888888888877642 334456777777888
Q ss_pred ccCCHHHHHHHHHHHhhCCC
Q 003829 755 KLNQRYEAITFVNNLSKLDP 774 (793)
Q Consensus 755 ~~g~~~~A~~~~~~~~~~~~ 774 (793)
..|++++|...++++.+.+|
T Consensus 80 ~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 80 KLGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHHhHHHHHHHHHHHHccCC
Confidence 88888888888888877765
No 147
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.04 E-value=7.4e-05 Score=76.16 Aligned_cols=89 Identities=15% Similarity=0.035 Sum_probs=54.3
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCC
Q 003829 645 MYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSL 723 (793)
Q Consensus 645 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~ 723 (793)
+..+...|++++|+..|+++++.. +.+...|..+..+|...|++++|+..++++++ +.| +...|..++.+|...|+
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~--l~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIE--LDPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHhCC
Confidence 344455666666666666666642 22455566666666666666666666666666 333 34556666666666666
Q ss_pred hHHHHHHHHHHHH
Q 003829 724 FVEALDVVRYMIK 736 (793)
Q Consensus 724 ~~~A~~~~~~~~~ 736 (793)
+++|+..++++++
T Consensus 86 ~~eA~~~~~~al~ 98 (356)
T PLN03088 86 YQTAKAALEKGAS 98 (356)
T ss_pred HHHHHHHHHHHHH
Confidence 6666666666665
No 148
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.04 E-value=0.017 Score=60.33 Aligned_cols=152 Identities=10% Similarity=0.032 Sum_probs=99.1
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC----ChhHHHHHHHHHHhcCCHHHH
Q 003829 293 SLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLP----SIVTYNSLISAYARDGLLEEA 368 (793)
Q Consensus 293 ~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A 368 (793)
|.+++|++++-+|.++. ..|..+.+.||+-.+.++++.- |... -..+|+.+...+.....+++|
T Consensus 748 g~feeaek~yld~drrD---------LAielr~klgDwfrV~qL~r~g---~~d~dD~~~e~A~r~ig~~fa~~~~We~A 815 (1189)
T KOG2041|consen 748 GEFEEAEKLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNG---GSDDDDEGKEDAFRNIGETFAEMMEWEEA 815 (1189)
T ss_pred cchhHhhhhhhccchhh---------hhHHHHHhhhhHHHHHHHHHcc---CCCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78899998888776652 3466677888887777666431 1111 134788888888888888888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003829 369 MELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKC 448 (793)
Q Consensus 369 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 448 (793)
.+.+..-.. ....+.++....++++-+.+...+ +.|....-.+.+++.+.|.-++|.+.|-+...
T Consensus 816 ~~yY~~~~~---------~e~~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~- 880 (1189)
T KOG2041|consen 816 AKYYSYCGD---------TENQIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRRSL- 880 (1189)
T ss_pred HHHHHhccc---------hHhHHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhccC-
Confidence 888775332 123466666666666554444333 44666777888888899998888887754321
Q ss_pred CCCCCHHHHHHHHHHHHhCCChHHHHHHHHH
Q 003829 449 NCKPDIVTWNTLLAVFGQNGMDSEVSGVFKE 479 (793)
Q Consensus 449 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 479 (793)
| ...+..|...+++.+|.++-++
T Consensus 881 ---p-----kaAv~tCv~LnQW~~avelaq~ 903 (1189)
T KOG2041|consen 881 ---P-----KAAVHTCVELNQWGEAVELAQR 903 (1189)
T ss_pred ---c-----HHHHHHHHHHHHHHHHHHHHHh
Confidence 1 1334556666667777666544
No 149
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.01 E-value=0.0002 Score=72.44 Aligned_cols=124 Identities=17% Similarity=0.131 Sum_probs=104.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003829 605 TLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYC 684 (793)
Q Consensus 605 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 684 (793)
....|+..+...++++.|..+|+++.+.. |+. ...++..+...++-.+|.+++++.++. .+.+...+..-...|.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHH
Confidence 34556667777899999999999999874 553 445788888889999999999999976 3446777777788899
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003829 685 RNGRMKEASRIFSEMRDSGLVPDV-ITYNTFVASYAADSLFVEALDVVRYMI 735 (793)
Q Consensus 685 ~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~ 735 (793)
..++++.|+++.+++.+ ..|+. .+|..|+.+|...|++++|+-.++.+-
T Consensus 246 ~k~~~~lAL~iAk~av~--lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVE--LSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred hcCCHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 99999999999999999 66755 799999999999999999999988764
No 150
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.98 E-value=0.00051 Score=73.13 Aligned_cols=142 Identities=15% Similarity=0.097 Sum_probs=100.5
Q ss_pred CCCCCHHHHHHHHHHHHc--c---CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcC--------CHHHHHHHHHH
Q 003829 633 GFTPSLTTYNTLMYMYSR--S---ENFARAEDVLREILAKGIKPD-IISYNTVIFAYCRNG--------RMKEASRIFSE 698 (793)
Q Consensus 633 ~~~~~~~~~~~l~~~~~~--~---g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g--------~~~~A~~~~~~ 698 (793)
..+.+...|..++.+... . ++.++|+.+|+++++. .|+ ...|..+..++.... ++..+.+..++
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 346677777777776432 2 2367888888888885 455 445555554443321 23344444554
Q ss_pred HHHCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCC
Q 003829 699 MRDSG-LVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVT 777 (793)
Q Consensus 699 ~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 777 (793)
..... ...+...|..++..+...|++++|...++++++. .|+...|..++..+...|+.++|.+.++++..++|..+
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 44421 2224577888877777889999999999999984 57888899999999999999999999999999999876
Q ss_pred H
Q 003829 778 K 778 (793)
Q Consensus 778 ~ 778 (793)
.
T Consensus 488 t 488 (517)
T PRK10153 488 T 488 (517)
T ss_pred h
Confidence 4
No 151
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.96 E-value=1.6e-05 Score=61.85 Aligned_cols=81 Identities=17% Similarity=0.301 Sum_probs=51.4
Q ss_pred cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHH
Q 003829 686 NGRMKEASRIFSEMRDSGLV-PDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLNQRYEAI 763 (793)
Q Consensus 686 ~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~ 763 (793)
.|++++|+.+++++.+.... ++...+..++.+|.+.|++++|+.++++ .+ ..+ +......++.+|.+.|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~--~~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK--LDPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT--HHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC--CCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 46777788888877773321 1344455577778888888888888777 32 222 2344445577777888888888
Q ss_pred HHHHHH
Q 003829 764 TFVNNL 769 (793)
Q Consensus 764 ~~~~~~ 769 (793)
+.++++
T Consensus 79 ~~l~~~ 84 (84)
T PF12895_consen 79 KALEKA 84 (84)
T ss_dssp HHHHHH
T ss_pred HHHhcC
Confidence 777763
No 152
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.93 E-value=0.0033 Score=54.24 Aligned_cols=134 Identities=11% Similarity=0.070 Sum_probs=97.6
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC---HHH
Q 003829 599 FSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPD---IIS 675 (793)
Q Consensus 599 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~ 675 (793)
..|++..-..|..++...|+..+|...|++...--+..|....-.+..+....+++..|...++++.+.. |+ +.+
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~--pa~r~pd~ 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYN--PAFRSPDG 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcC--CccCCCCc
Confidence 4566666677778888888888888888887765456677777778888888888888888888887652 22 334
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003829 676 YNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIK 736 (793)
Q Consensus 676 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 736 (793)
...+...|...|++.+|+..|+.+.. ..|+...-......+.++|+.++|...+..+.+
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~--~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAIS--YYPGPQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHH--hCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 55667778888888888888888887 556665555566677788877777666655543
No 153
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.91 E-value=3.3e-05 Score=56.58 Aligned_cols=62 Identities=18% Similarity=0.259 Sum_probs=50.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCC
Q 003829 713 TFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHV 776 (793)
Q Consensus 713 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 776 (793)
.++..+...|++++|+..++++++. .| +...+..++.++...|++++|..+++++++..|++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQ--DPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCC--STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 3567788889999999999998875 35 47788888899999999999999999999888875
No 154
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.91 E-value=0.0024 Score=63.14 Aligned_cols=151 Identities=16% Similarity=0.195 Sum_probs=88.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc-CCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHH
Q 003829 610 ISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRS-ENFARAEDVLREILAK----GIKPD--IISYNTVIFA 682 (793)
Q Consensus 610 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~----~~~~~--~~~~~~l~~~ 682 (793)
+..|...|++..|-..+.. +...|... |++++|++.|++.... + .+. ...+..++..
T Consensus 101 ~~~y~~~G~~~~aA~~~~~---------------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l 164 (282)
T PF14938_consen 101 IEIYREAGRFSQAAKCLKE---------------LAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADL 164 (282)
T ss_dssp HHHHHHCT-HHHHHHHHHH---------------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHHH---------------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHH
Confidence 3445556666655444443 44566666 8888888888887743 2 111 3456677788
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCC-----CH-HHHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCCC--HHHHHHHHHH
Q 003829 683 YCRNGRMKEASRIFSEMRDSGLVP-----DV-ITYNTFVASYAADSLFVEALDVVRYMIKQ--GCKPN--QNTYNSIVDG 752 (793)
Q Consensus 683 ~~~~g~~~~A~~~~~~~~~~~~~p-----~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~--~~~~~~l~~~ 752 (793)
+.+.|++++|.++|+++...-... +. ..|...+-++...|+...|.+.+++.... ++... ......|+.+
T Consensus 165 ~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A 244 (282)
T PF14938_consen 165 YARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEA 244 (282)
T ss_dssp HHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHH
Confidence 888899999999998887743221 12 22334445666778888888888887643 22222 2344556655
Q ss_pred HHccCCHHHHHHHHHHHhhCCCCCC
Q 003829 753 YCKLNQRYEAITFVNNLSKLDPHVT 777 (793)
Q Consensus 753 ~~~~g~~~~A~~~~~~~~~~~~~~~ 777 (793)
+ +.||.+...+.+.+--+..+-++
T Consensus 245 ~-~~~D~e~f~~av~~~d~~~~ld~ 268 (282)
T PF14938_consen 245 Y-EEGDVEAFTEAVAEYDSISRLDN 268 (282)
T ss_dssp H-HTT-CCCHHHHCHHHTTSS---H
T ss_pred H-HhCCHHHHHHHHHHHcccCccHH
Confidence 4 77787777777777766655433
No 155
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.91 E-value=4.6e-05 Score=56.69 Aligned_cols=66 Identities=26% Similarity=0.347 Sum_probs=52.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccC-CHHHHHHHHHHHhhCCC
Q 003829 707 DVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLN-QRYEAITFVNNLSKLDP 774 (793)
Q Consensus 707 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~ 774 (793)
+..+|..++..+...|++++|+..|+++++. .| +...|..++.+|.+.| ++++|++.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIEL--DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH--STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 4567788888888888888888888888874 34 4777888888888888 68888888888888776
No 156
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.89 E-value=0.034 Score=55.47 Aligned_cols=129 Identities=15% Similarity=0.126 Sum_probs=83.9
Q ss_pred HHhcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHH----HHHc---cCCHHHHHHHHHHHHHCCCCCC----HHHHHHHH
Q 003829 613 YGRRQM-VAKTNEILHFMNDSGFTPSLTTYNTLMY----MYSR---SENFARAEDVLREILAKGIKPD----IISYNTVI 680 (793)
Q Consensus 613 ~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~l~~----~~~~---~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~ 680 (793)
+.+.|. -++|+.+++.+.+-. +-|...-|.+.. +|.+ ...+.+-..+-+-+...|+.|- ...-|.+.
T Consensus 389 lW~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~La 467 (549)
T PF07079_consen 389 LWEIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLA 467 (549)
T ss_pred HHhcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHH
Confidence 444554 677777777777642 334443332221 1211 1223333344344445566653 33445555
Q ss_pred HH--HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003829 681 FA--YCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSI 749 (793)
Q Consensus 681 ~~--~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 749 (793)
++ +...|++.++.-+-..+.+ +.|++.+|..++-++....++++|.+++.+ ++|+..+++.-
T Consensus 468 DAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~-----LP~n~~~~dsk 531 (549)
T PF07079_consen 468 DAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQK-----LPPNERMRDSK 531 (549)
T ss_pred HHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHh-----CCCchhhHHHH
Confidence 43 5678999999988888888 899999999999999999999999999988 56777776653
No 157
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.88 E-value=0.00041 Score=62.83 Aligned_cols=113 Identities=16% Similarity=0.133 Sum_probs=55.5
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHH
Q 003829 641 YNTLMYMYSRSENFARAEDVLREILAKGIKPD--IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVAS 717 (793)
Q Consensus 641 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~ 717 (793)
+..+...+...|++++|...|+++.+....+. ...+..++.++.+.|++++|..+++++++ ..| +...+..++.+
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~ 115 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE--LNPKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcccHHHHHHHHHH
Confidence 44444444555555555555555544321111 23444444555555555555555555554 222 22334444444
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCC
Q 003829 718 YAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHV 776 (793)
Q Consensus 718 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 776 (793)
|...|+...+..-++.+.. .+++|.+.++++.+.+|++
T Consensus 116 ~~~~g~~~~a~~~~~~A~~---------------------~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 116 YHKRGEKAEEAGDQDEAEA---------------------LFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHcCChHhHhhCHHHHHH---------------------HHHHHHHHHHHHHhhCchh
Confidence 4444444333333222211 1677888888888888876
No 158
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.88 E-value=0.0029 Score=54.59 Aligned_cols=134 Identities=13% Similarity=0.079 Sum_probs=109.7
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC---CCCCHHH
Q 003829 634 FTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSG---LVPDVIT 710 (793)
Q Consensus 634 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~p~~~~ 710 (793)
..|++..--.|..+....|+..+|...|++...--+.-|......+..+....++..+|...++.+.+.. -.| ..
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~p--d~ 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSP--DG 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCC--Cc
Confidence 3677777778899999999999999999999875456678888889999999999999999999999843 233 34
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhh
Q 003829 711 YNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSK 771 (793)
Q Consensus 711 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 771 (793)
...+++.|...|++.+|...|+.++. .-|+...-......+.++|+.++|..-+..+.+
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~--~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAIS--YYPGPQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHH--hCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 56788899999999999999999997 467766666677778899988887665555443
No 159
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.85 E-value=3e-05 Score=48.32 Aligned_cols=33 Identities=52% Similarity=0.831 Sum_probs=18.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 003829 351 TYNSLISAYARDGLLEEAMELKTQMVEIGITPD 383 (793)
Q Consensus 351 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~ 383 (793)
+|+.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 455555555555555555555555555555554
No 160
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.84 E-value=0.00028 Score=66.08 Aligned_cols=97 Identities=16% Similarity=0.187 Sum_probs=58.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCC
Q 003829 610 ISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPD-IISYNTVIFAYCRNGR 688 (793)
Q Consensus 610 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~ 688 (793)
.+-+.+.+++++|+..|.+.++.. +.|.+.|..=..+|++.|.++.|++-.+..+.. .|. ..+|..|..+|...|+
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG~A~~~~gk 164 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLGLAYLALGK 164 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCc
Confidence 334455566666666666666653 445555555666666666666666666666653 333 4466666666666666
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHH
Q 003829 689 MKEASRIFSEMRDSGLVPDVITY 711 (793)
Q Consensus 689 ~~~A~~~~~~~~~~~~~p~~~~~ 711 (793)
+++|.+.|++.++ +.|+..+|
T Consensus 165 ~~~A~~aykKaLe--ldP~Ne~~ 185 (304)
T KOG0553|consen 165 YEEAIEAYKKALE--LDPDNESY 185 (304)
T ss_pred HHHHHHHHHhhhc--cCCCcHHH
Confidence 6666666666666 55655444
No 161
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.82 E-value=0.00047 Score=66.90 Aligned_cols=133 Identities=12% Similarity=0.060 Sum_probs=96.0
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHH----HCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----CCC-CCCHH
Q 003829 640 TYNTLMYMYSRSENFARAEDVLREIL----AKGIK-PDIISYNTVIFAYCRNGRMKEASRIFSEMRD----SGL-VPDVI 709 (793)
Q Consensus 640 ~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~-~p~~~ 709 (793)
.|..|.+.|.-.|+++.|+...+.-+ +.|-+ .....+..+.+++.-.|+++.|.+.|+.... .|- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 35566666777889999988766433 22211 1245788899999999999999999987764 222 12345
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH----cC-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhC
Q 003829 710 TYNTFVASYAADSLFVEALDVVRYMIK----QG-CKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKL 772 (793)
Q Consensus 710 ~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 772 (793)
....|+..|.-..++++|+.++.+=+. .+ ..-....+.+|+.+|...|..++|..+.+..++.
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 667888999988899999998877432 11 1123567889999999999999999888877655
No 162
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.81 E-value=0.00081 Score=63.54 Aligned_cols=120 Identities=15% Similarity=0.089 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcC---ChHHHHHH
Q 003829 655 ARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADS---LFVEALDV 730 (793)
Q Consensus 655 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g---~~~~A~~~ 730 (793)
++...-++.-+..+ +-|...|..|..+|...|+++.|...|.+..+ +.| +...+..++.++..+. ...++..+
T Consensus 139 ~~l~a~Le~~L~~n-P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r--L~g~n~~~~~g~aeaL~~~a~~~~ta~a~~l 215 (287)
T COG4235 139 EALIARLETHLQQN-PGDAEGWDLLGRAYMALGRASDALLAYRNALR--LAGDNPEILLGLAEALYYQAGQQMTAKARAL 215 (287)
T ss_pred HHHHHHHHHHHHhC-CCCchhHHHHHHHHHHhcchhHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 33344444444442 45788899999999999999999999999988 444 3466677777666443 26778899
Q ss_pred HHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHH
Q 003829 731 VRYMIKQGCKP-NQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKE 779 (793)
Q Consensus 731 ~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 779 (793)
++++++. .| |......|+..+...|++.+|...++.|++..|.++..
T Consensus 216 l~~al~~--D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~r 263 (287)
T COG4235 216 LRQALAL--DPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPR 263 (287)
T ss_pred HHHHHhc--CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCch
Confidence 9998874 44 57777788888999999999999999999888776553
No 163
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.80 E-value=0.00056 Score=61.71 Aligned_cols=103 Identities=13% Similarity=0.091 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHH
Q 003829 673 IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP--DVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPN-QNTYNSI 749 (793)
Q Consensus 673 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l 749 (793)
...|..++..+...|++++|...|++++.....+ ...++..++.+|...|++++|+..++++++. .|+ ...+..+
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~--~~~~~~~~~~l 112 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER--NPFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCcHHHHHHH
Confidence 4456666677777788888888888777632222 1246777777888888888888888887763 333 4555666
Q ss_pred HHHHH-------ccCCHH-------HHHHHHHHHhhCCCCCC
Q 003829 750 VDGYC-------KLNQRY-------EAITFVNNLSKLDPHVT 777 (793)
Q Consensus 750 ~~~~~-------~~g~~~-------~A~~~~~~~~~~~~~~~ 777 (793)
+..+. +.|+++ +|..++++++..+|++.
T Consensus 113 a~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 113 AVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 66666 666665 55666666777777643
No 164
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.80 E-value=0.066 Score=56.21 Aligned_cols=204 Identities=13% Similarity=0.118 Sum_probs=107.0
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 003829 346 LPSIVTYNSLISAYARDGLLEEAMELKTQMVEI-GITP--------DVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCK 416 (793)
Q Consensus 346 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~~--------~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 416 (793)
.|....|..+.......-.++-|...|-+...- |++. +...-..-+.+ --|++++|++++-++-++
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~--~~g~feeaek~yld~drr--- 763 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISA--FYGEFEEAEKLYLDADRR--- 763 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhh--hhcchhHhhhhhhccchh---
Confidence 356667777776666666666666655443321 1110 00001111112 247788888887777655
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003829 417 PNICTFNALIKMHGNRGNFVEMMKVFDEINKC-NCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTL 495 (793)
Q Consensus 417 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 495 (793)
...+..+.+.|++-...++++.--.. .-..-...|+.+...+.....+++|.+.|..-.. ....
T Consensus 764 ------DLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~---------~e~~ 828 (1189)
T KOG2041|consen 764 ------DLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD---------TENQ 828 (1189)
T ss_pred ------hhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------hHhH
Confidence 23455666777777666666532110 0001134566677777777777777766654321 1123
Q ss_pred HHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHcCCCH
Q 003829 496 ISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREI 575 (793)
Q Consensus 496 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 575 (793)
+.++.+...+++-..+-..+.+ +....-.+.+++.+.|.-++|.+.+-+-- .| ...+..|...+++
T Consensus 829 ~ecly~le~f~~LE~la~~Lpe-----~s~llp~~a~mf~svGMC~qAV~a~Lr~s----~p-----kaAv~tCv~LnQW 894 (1189)
T KOG2041|consen 829 IECLYRLELFGELEVLARTLPE-----DSELLPVMADMFTSVGMCDQAVEAYLRRS----LP-----KAAVHTCVELNQW 894 (1189)
T ss_pred HHHHHHHHhhhhHHHHHHhcCc-----ccchHHHHHHHHHhhchHHHHHHHHHhcc----Cc-----HHHHHHHHHHHHH
Confidence 4445554455444433333322 44555566677777777777776654322 11 1234556666667
Q ss_pred HHHHHHHH
Q 003829 576 DQMLALSE 583 (793)
Q Consensus 576 ~~a~~~~~ 583 (793)
.+|.++.+
T Consensus 895 ~~avelaq 902 (1189)
T KOG2041|consen 895 GEAVELAQ 902 (1189)
T ss_pred HHHHHHHH
Confidence 66666644
No 165
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.79 E-value=0.00082 Score=56.61 Aligned_cols=98 Identities=15% Similarity=0.072 Sum_probs=64.7
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHH
Q 003829 640 TYNTLMYMYSRSENFARAEDVLREILAKGIK--PDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP--DVITYNTFV 715 (793)
Q Consensus 640 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~ 715 (793)
++..++..+.+.|++++|.+.|+++...... .....+..++.++.+.|++++|...|+.+....... ....+..++
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 3445566667777777787777777764211 113455667777777788888888888777632211 134567777
Q ss_pred HHHHhcCChHHHHHHHHHHHHc
Q 003829 716 ASYAADSLFVEALDVVRYMIKQ 737 (793)
Q Consensus 716 ~~~~~~g~~~~A~~~~~~~~~~ 737 (793)
.++.+.|++++|...++++++.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHH
Confidence 7777788888888888887764
No 166
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.79 E-value=0.0034 Score=67.02 Aligned_cols=145 Identities=15% Similarity=0.105 Sum_probs=106.0
Q ss_pred CCCCCCHHHHHHHHHHHHh--c---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc--------CCHHHHHHHHHH
Q 003829 597 KGFSPDIPTLNAMISIYGR--R---QMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRS--------ENFARAEDVLRE 663 (793)
Q Consensus 597 ~~~~~~~~~~~~l~~~~~~--~---g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~A~~~~~~ 663 (793)
...+.+...|...+++... . +..++|..+|++..+.. |.....|..+..++... ++...+.+..++
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 4456778888888887543 2 33779999999999875 44455666555544322 123455555555
Q ss_pred HHHCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 003829 664 ILAKG-IKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPN 742 (793)
Q Consensus 664 ~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 742 (793)
..... ...+...|..+...+...|++++|...++++++ ..|+...|..++..|...|+.++|.+.++++.. +.|.
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~--L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~--L~P~ 485 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAID--LEMSWLNYVLLGKVYELKGDNRLAADAYSTAFN--LRPG 485 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCC
Confidence 44421 233567788887777788999999999999999 667888999999999999999999999999987 4666
Q ss_pred HHHH
Q 003829 743 QNTY 746 (793)
Q Consensus 743 ~~~~ 746 (793)
..+|
T Consensus 486 ~pt~ 489 (517)
T PRK10153 486 ENTL 489 (517)
T ss_pred CchH
Confidence 5554
No 167
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.78 E-value=4.9e-05 Score=47.35 Aligned_cols=33 Identities=39% Similarity=0.677 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 003829 210 AYTSLITTYASNGRYREAVMVFKKMEEEGCKPT 242 (793)
Q Consensus 210 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 242 (793)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 577777777777777777777777777777776
No 168
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.78 E-value=0.045 Score=53.42 Aligned_cols=251 Identities=14% Similarity=0.094 Sum_probs=153.2
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH----HHHhcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHcCCCHH
Q 003829 501 RCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLA----ALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREID 576 (793)
Q Consensus 501 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 576 (793)
-.|+++.|.+-|+.|.. |+++...=+. .-.+.|..+.|..+-+..-..- +.-...+...+...+..|+++
T Consensus 132 ~eG~~~~Ar~kfeAMl~-----dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd 205 (531)
T COG3898 132 LEGDYEDARKKFEAMLD-----DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWD 205 (531)
T ss_pred hcCchHHHHHHHHHHhc-----ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChH
Confidence 45777777777777775 3333322222 2235677777776666655431 224456666777777777777
Q ss_pred HHHHHHHHHHhHHHHHHHHHCCCCCCHH--HHHHHHHHH---HhcCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHc
Q 003829 577 QMLALSEEIYSERAFLELKKKGFSPDIP--TLNAMISIY---GRRQMVAKTNEILHFMNDSGFTPSLTT-YNTLMYMYSR 650 (793)
Q Consensus 577 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~---~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~~~~ 650 (793)
.|+++.+.-.+ ..-+.++.. .-..|+.+- .-..+...|...-.+..+. .||..- --.-..++.+
T Consensus 206 ~AlkLvd~~~~--------~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~ 275 (531)
T COG3898 206 GALKLVDAQRA--------AKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKL--APDLVPAAVVAARALFR 275 (531)
T ss_pred HHHHHHHHHHH--------HHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHh
Confidence 77777665332 111222221 111111111 1123455566655555543 455433 2234567889
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-CCCCCCH-HHHHHHHHHHHhcCChHHHH
Q 003829 651 SENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRD-SGLVPDV-ITYNTFVASYAADSLFVEAL 728 (793)
Q Consensus 651 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p~~-~~~~~l~~~~~~~g~~~~A~ 728 (793)
.|+..++-.+++.+-+. .|.+..+..+ .+.+.|+ .++.-++++.. ..++||. .....+..+-...|++..|.
T Consensus 276 d~~~rKg~~ilE~aWK~--ePHP~ia~lY--~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~AR 349 (531)
T COG3898 276 DGNLRKGSKILETAWKA--EPHPDIALLY--VRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAAR 349 (531)
T ss_pred ccchhhhhhHHHHHHhc--CCChHHHHHH--HHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHH
Confidence 99999999999999987 4555444332 3445554 34444444433 1256654 66778888888999999998
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHcc-CCHHHHHHHHHHHhhCCCC
Q 003829 729 DVVRYMIKQGCKPNQNTYNSIVDGYCKL-NQRYEAITFVNNLSKLDPH 775 (793)
Q Consensus 729 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~ 775 (793)
.-.+.+.. ..|....|..|.+.-... ||-.+++.++-+.++.-.+
T Consensus 350 a~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrd 395 (531)
T COG3898 350 AKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRD 395 (531)
T ss_pred HHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCC
Confidence 88888776 578888888888875544 9999999999999987433
No 169
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.78 E-value=0.014 Score=55.82 Aligned_cols=67 Identities=18% Similarity=0.070 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 003829 173 GSVIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYA---YTSLITTYASNGRYREAVMVFKKMEEEGCK 240 (793)
Q Consensus 173 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 240 (793)
...+......+...|+++.|.+.|+.+....+. +... .-.++.++.+.+++++|+..|++..+.-+.
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~-s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~ 101 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPF-GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT 101 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcC
Confidence 333444455556678888888888887765443 2332 245667777888888888888888776433
No 170
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.78 E-value=0.00078 Score=57.50 Aligned_cols=98 Identities=10% Similarity=0.009 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003829 638 LTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVAS 717 (793)
Q Consensus 638 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 717 (793)
....-.+...+...|++++|.++|+-+...+ +-+..-|..|.-++-..|++++|...|..+...++. |+..+-.++.+
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c 112 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHH
Confidence 3444456666778889999999998888753 224666778888888888999999999988885432 56788888888
Q ss_pred HHhcCChHHHHHHHHHHHHc
Q 003829 718 YAADSLFVEALDVVRYMIKQ 737 (793)
Q Consensus 718 ~~~~g~~~~A~~~~~~~~~~ 737 (793)
+...|+.+.|.+.|+..+..
T Consensus 113 ~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 113 YLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 88999999999888888764
No 171
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.74 E-value=0.00047 Score=67.75 Aligned_cols=144 Identities=12% Similarity=0.106 Sum_probs=105.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003829 604 PTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSR-SENFARAEDVLREILAKGIKPDIISYNTVIFA 682 (793)
Q Consensus 604 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 682 (793)
.+|..+++...+.+..+.|..+|.+..+.+ ..+..+|...+..-.. .++.+.|.++|+...+. +..+...|...+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 367778888888888999999999998653 3455666666655333 56777799999999987 66678889999999
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003829 683 YCRNGRMKEASRIFSEMRDSGLVPDV---ITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDG 752 (793)
Q Consensus 683 ~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 752 (793)
+...|+.+.|+.+|++.+.. +.++. ..|..++..-.+.|+.+.+.++.+++.+. -|+......+.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~~r 149 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFSDR 149 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHHCC
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHHHH
Confidence 99999999999999999874 32222 48899999888999999999999998874 3443333344433
No 172
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.73 E-value=0.001 Score=67.73 Aligned_cols=120 Identities=16% Similarity=0.150 Sum_probs=76.4
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHH
Q 003829 278 DSYTFNTLISCCRRGSLHEEAAGVFEEMKLA--GFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSL 355 (793)
Q Consensus 278 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 355 (793)
.......++..+....+.+++..++-+.... ....-..|..++++.|.+.|..++++.+++.=...|+-||..++|.|
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 4555555666666666666676666666554 12222334457777777777777777777776666777777777777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 003829 356 ISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKA 397 (793)
Q Consensus 356 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 397 (793)
+..+.+.|++..|.++...|...+...+..|+..-+.+|.+-
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 777777777777777777766666555656665555555443
No 173
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.72 E-value=0.012 Score=58.09 Aligned_cols=132 Identities=16% Similarity=0.185 Sum_probs=57.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhC----CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003829 179 LISMLGKEGKVSVAASLLHGLHKD----GFD-IDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVY 253 (793)
Q Consensus 179 l~~~~~~~~~~~~A~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~ 253 (793)
....+...|++++|.+.|...... +-. .-...|.....+|.+ +++++|+..+++.. ..|
T Consensus 41 Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~-~~~~~Ai~~~~~A~---------------~~y 104 (282)
T PF14938_consen 41 AANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKK-GDPDEAIECYEKAI---------------EIY 104 (282)
T ss_dssp HHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHH---------------HHH
T ss_pred HHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-hCHHHHHHHHHHHH---------------HHH
Confidence 334455566777766666544211 000 011123333333322 25555555544443 345
Q ss_pred HhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhc
Q 003829 254 GKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRG-SLHEEAAGVFEEMKLA----GFSP-DKVTYNALLDVYGKC 327 (793)
Q Consensus 254 ~~~g~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~----g~~~-~~~~~~~li~~~~~~ 327 (793)
...| ++..|-..+..+- ..|... |++++|.+.|++.... |... -..++..++..+.+.
T Consensus 105 ~~~G-~~~~aA~~~~~lA---------------~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l 168 (282)
T PF14938_consen 105 REAG-RFSQAAKCLKELA---------------EIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARL 168 (282)
T ss_dssp HHCT--HHHHHHHHHHHH---------------HHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT
T ss_pred HhcC-cHHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHh
Confidence 5555 5555544444332 234444 5666666666655432 1000 012334445555555
Q ss_pred CChHHHHHHHHHHHH
Q 003829 328 RRPKEAMQVLREMKI 342 (793)
Q Consensus 328 g~~~~A~~~~~~~~~ 342 (793)
|++++|.++|+++..
T Consensus 169 ~~y~~A~~~~e~~~~ 183 (282)
T PF14938_consen 169 GRYEEAIEIYEEVAK 183 (282)
T ss_dssp T-HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 555666555555544
No 174
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.72 E-value=0.0006 Score=54.60 Aligned_cols=93 Identities=16% Similarity=0.221 Sum_probs=56.0
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 003829 642 NTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAAD 721 (793)
Q Consensus 642 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 721 (793)
..++..+...|++++|...++++.+.. +.+...+..++.++...|++++|.+++++..+.... +..++..++..+...
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 81 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-NAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHHHHHHHH
Confidence 344555556666666666666666542 223355666666666666777777777666663222 234566666666667
Q ss_pred CChHHHHHHHHHHHH
Q 003829 722 SLFVEALDVVRYMIK 736 (793)
Q Consensus 722 g~~~~A~~~~~~~~~ 736 (793)
|++++|...++...+
T Consensus 82 ~~~~~a~~~~~~~~~ 96 (100)
T cd00189 82 GKYEEALEAYEKALE 96 (100)
T ss_pred HhHHHHHHHHHHHHc
Confidence 777777776666654
No 175
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.71 E-value=7.1e-05 Score=46.20 Aligned_cols=31 Identities=39% Similarity=0.591 Sum_probs=14.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 003829 351 TYNSLISAYARDGLLEEAMELKTQMVEIGIT 381 (793)
Q Consensus 351 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 381 (793)
+|+.++.+|++.|+++.|.++|+.|.+.|+.
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~ 33 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVK 33 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 4444444444444444444444444444443
No 176
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.69 E-value=6.7e-05 Score=46.30 Aligned_cols=33 Identities=33% Similarity=0.622 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 003829 209 YAYTSLITTYASNGRYREAVMVFKKMEEEGCKP 241 (793)
Q Consensus 209 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 241 (793)
.+|+.++.+|++.|+++.|..+|+.|.+.|+.|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 356666666666666666666666666666554
No 177
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.68 E-value=0.00059 Score=65.56 Aligned_cols=103 Identities=14% Similarity=0.027 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCC-CHHHHHH
Q 003829 675 SYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDV----ITYNTFVASYAADSLFVEALDVVRYMIKQG-CKP-NQNTYNS 748 (793)
Q Consensus 675 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p-~~~~~~~ 748 (793)
.|......+.+.|++++|...|+.+++ ..|+. ..+..++.+|...|++++|+..|+++++.- -.| ....+..
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~--~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVK--KYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH--HCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 344444334566888888888888887 34433 467788888888888888888888887631 011 2556666
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhCCCCCCHH
Q 003829 749 IVDGYCKLNQRYEAITFVNNLSKLDPHVTKE 779 (793)
Q Consensus 749 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 779 (793)
++.++...|+.++|+.+++++++..|+.+..
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a 253 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKKYPGTDGA 253 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCcCCHHH
Confidence 7777888888888988888888888886653
No 178
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.68 E-value=0.00078 Score=60.79 Aligned_cols=114 Identities=13% Similarity=0.006 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCCHHHHHHH
Q 003829 619 VAKTNEILHFMN-DSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKP--DIISYNTVIFAYCRNGRMKEASRI 695 (793)
Q Consensus 619 ~~~A~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~ 695 (793)
+..+...+..+. ..+..-....|..++..+...|++++|+..|++.......+ ...+|..+..+|...|++++|.+.
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~ 94 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY 94 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 334444444443 22222234556777777888899999999999998653222 235788889999999999999999
Q ss_pred HHHHHHCCCCCC-HHHHHHHHHHHH-------hcCChHHHHHHHHHH
Q 003829 696 FSEMRDSGLVPD-VITYNTFVASYA-------ADSLFVEALDVVRYM 734 (793)
Q Consensus 696 ~~~~~~~~~~p~-~~~~~~l~~~~~-------~~g~~~~A~~~~~~~ 734 (793)
++++.+ +.|+ ...+..++..+. ..|++++|+..+++.
T Consensus 95 ~~~Al~--~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 95 YFQALE--RNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHH--hCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 999988 4443 355666666666 788887666555554
No 179
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.67 E-value=0.027 Score=55.38 Aligned_cols=52 Identities=19% Similarity=0.120 Sum_probs=27.3
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003829 324 YGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMV 376 (793)
Q Consensus 324 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 376 (793)
+.+..++.+|+..+....+. ++.+..-|..-+..+...|++++|..-.+.-+
T Consensus 59 ~yk~k~Y~nal~~yt~Ai~~-~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~ 110 (486)
T KOG0550|consen 59 FYKQKTYGNALKNYTFAIDM-CPDNASYYSNRAATLMMLGRFEEALGDARQSV 110 (486)
T ss_pred HHHHhhHHHHHHHHHHHHHh-CccchhhhchhHHHHHHHHhHhhcccchhhhe
Confidence 44555566666666665554 22234445444555555566666555444433
No 180
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.66 E-value=0.0001 Score=57.26 Aligned_cols=80 Identities=15% Similarity=0.204 Sum_probs=53.2
Q ss_pred cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHH
Q 003829 651 SENFARAEDVLREILAKGIK-PDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPD-VITYNTFVASYAADSLFVEAL 728 (793)
Q Consensus 651 ~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~ 728 (793)
.|+++.|+.+++++.+.... ++...+..++.+|.+.|++++|..++++ .+ ..+. ......++.+|.+.|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~--~~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK--LDPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT--HHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC--CCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 46788888888888875321 1344555578888888888888888877 33 2222 244445677888888888888
Q ss_pred HHHHH
Q 003829 729 DVVRY 733 (793)
Q Consensus 729 ~~~~~ 733 (793)
+.+++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 88775
No 181
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.65 E-value=0.0027 Score=57.46 Aligned_cols=112 Identities=13% Similarity=0.057 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003829 603 IPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPS--LTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVI 680 (793)
Q Consensus 603 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 680 (793)
...+..+...+...|++++|...|++..+....+. ...+..+..++.+.|++++|+..+++..+.. +.+...+..++
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 113 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHH
Confidence 45678888889999999999999999987542222 4678888999999999999999999999863 33566777888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003829 681 FAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIK 736 (793)
Q Consensus 681 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 736 (793)
.++...|+...+..-++.+.. .+++|.++++++++
T Consensus 114 ~~~~~~g~~~~a~~~~~~A~~---------------------~~~~A~~~~~~a~~ 148 (172)
T PRK02603 114 VIYHKRGEKAEEAGDQDEAEA---------------------LFDKAAEYWKQAIR 148 (172)
T ss_pred HHHHHcCChHhHhhCHHHHHH---------------------HHHHHHHHHHHHHh
Confidence 888888887666655444332 25667777777765
No 182
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.65 E-value=0.081 Score=52.69 Aligned_cols=132 Identities=13% Similarity=0.190 Sum_probs=60.2
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHH
Q 003829 640 TYNTLMYMYSRSENFARAEDVLREILAKG-IKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITY-NTFVAS 717 (793)
Q Consensus 640 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~-~~l~~~ 717 (793)
+|..+++.-.+..-++.|..+|-++.+.+ ..+++.++++++.-+ ..|+...|.++|+--+. ..||...| +..+.-
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~-~~~d~~ta~~ifelGl~--~f~d~~~y~~kyl~f 475 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYY-ATGDRATAYNIFELGLL--KFPDSTLYKEKYLLF 475 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHH-hcCCcchHHHHHHHHHH--hCCCchHHHHHHHHH
Confidence 34444444444444555555555555544 333444444444433 23444555555554433 22333222 333334
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCC
Q 003829 718 YAADSLFVEALDVVRYMIKQGCKPN--QNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPH 775 (793)
Q Consensus 718 ~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 775 (793)
+...++-+.|..+|+..+++ +..+ ..+|..++.-=..-|+...+..+-+++.+.-|.
T Consensus 476 Li~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQ 534 (660)
T COG5107 476 LIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQ 534 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCc
Confidence 44445555555555544432 2222 344555554444555555555555555555444
No 183
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.62 E-value=0.0012 Score=52.03 Aligned_cols=79 Identities=18% Similarity=0.349 Sum_probs=49.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHhCCCCCCHHHH
Q 003829 211 YTSLITTYASNGRYREAVMVFKKMEEEGC-KPTLITYNVILNVYGKMGMP-------WNKIMALVEGMKSAGVKPDSYTF 282 (793)
Q Consensus 211 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~ll~~~~~~g~~-------~~~a~~~~~~~~~~~~~p~~~~~ 282 (793)
....|..+...+++.....+|+.+++.|+ .|++.+|+.++...++...+ .-..+.+|+.|...+++|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34455555666888888888888888887 77888888888877765421 12334445555555555555555
Q ss_pred HHHHHHH
Q 003829 283 NTLISCC 289 (793)
Q Consensus 283 ~~l~~~~ 289 (793)
+.++..+
T Consensus 108 nivl~~L 114 (120)
T PF08579_consen 108 NIVLGSL 114 (120)
T ss_pred HHHHHHH
Confidence 5555443
No 184
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.62 E-value=0.0025 Score=52.60 Aligned_cols=89 Identities=16% Similarity=0.163 Sum_probs=42.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHH
Q 003829 680 IFAYCRNGRMKEASRIFSEMRDSGLVPD--VITYNTFVASYAADSLFVEALDVVRYMIKQGCKPN----QNTYNSIVDGY 753 (793)
Q Consensus 680 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~ 753 (793)
.+++-..|+.++|..+|++.++.|+... ...+..++..|...|++++|+.++++..+. .|+ ......+..++
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~--~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE--FPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHHHHHH
Confidence 3444455555555555555555444332 134445555555555555555555555442 121 11222233344
Q ss_pred HccCCHHHHHHHHHHHh
Q 003829 754 CKLNQRYEAITFVNNLS 770 (793)
Q Consensus 754 ~~~g~~~~A~~~~~~~~ 770 (793)
...|+.++|++++-..+
T Consensus 86 ~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHCCCHHHHHHHHHHHH
Confidence 45555555555554444
No 185
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.60 E-value=0.00021 Score=52.89 Aligned_cols=57 Identities=21% Similarity=0.260 Sum_probs=43.7
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCC
Q 003829 719 AADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHV 776 (793)
Q Consensus 719 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 776 (793)
.+.|++++|+++++++++.. +-+...+..++.+|.+.|++++|..+++++.+.+|++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~ 58 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDN 58 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTH
T ss_pred hhccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCH
Confidence 46788888888888888752 3357777788888888888888888888888888874
No 186
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.60 E-value=0.0017 Score=66.25 Aligned_cols=97 Identities=11% Similarity=-0.030 Sum_probs=83.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 003829 610 ISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRM 689 (793)
Q Consensus 610 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 689 (793)
...+...|++++|++.|+++++.. +.+...|..+..+|.+.|++++|+..+++++... +.+...|..++.+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCH
Confidence 445667899999999999999875 6678889999999999999999999999999863 33577899999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHH
Q 003829 690 KEASRIFSEMRDSGLVPDVIT 710 (793)
Q Consensus 690 ~~A~~~~~~~~~~~~~p~~~~ 710 (793)
++|...|+++++ +.|+...
T Consensus 87 ~eA~~~~~~al~--l~P~~~~ 105 (356)
T PLN03088 87 QTAKAALEKGAS--LAPGDSR 105 (356)
T ss_pred HHHHHHHHHHHH--hCCCCHH
Confidence 999999999999 5565433
No 187
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.56 E-value=0.0012 Score=64.88 Aligned_cols=137 Identities=12% Similarity=0.093 Sum_probs=105.6
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003829 639 TTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCR-NGRMKEASRIFSEMRDSGLVPDVITYNTFVAS 717 (793)
Q Consensus 639 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 717 (793)
.+|..++....+.+..+.|..+|.++.+.+ ..+..+|...+..-.. .++.+.|.++|+..++. +..+...+...+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 467888888889999999999999998642 3345556665555344 56777799999999984 33366788899999
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCH
Q 003829 718 YAADSLFVEALDVVRYMIKQGCKPN---QNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTK 778 (793)
Q Consensus 718 ~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 778 (793)
+...|+.+.|..+|++.+.. +.++ ..+|...+..=.+.|+.+....+.+++.+.-|+...
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~ 142 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNS 142 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-H
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhH
Confidence 99999999999999999864 3333 358999999989999999999999999999887443
No 188
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.51 E-value=0.02 Score=54.82 Aligned_cols=79 Identities=10% Similarity=-0.022 Sum_probs=57.1
Q ss_pred HHHHHHHhccCCChHHHHHHHHHHHhccCCCCCccchHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 003829 136 LLGIVKGLGFHKKTDLALDVFEWFRSCCSKDGNLVLRGSVIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLI 215 (793)
Q Consensus 136 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 215 (793)
+-.....+...|+++.|...|+.+.. ..|..+....+...++.++.+.++++.|...+++.++..+.....-+....
T Consensus 35 ~Y~~A~~~~~~g~y~~Ai~~f~~l~~---~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~ 111 (243)
T PRK10866 35 IYATAQQKLQDGNWKQAITQLEALDN---RYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYM 111 (243)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHH
Confidence 33444555668999999999999987 344544555566788899999999999999999998876553333333333
Q ss_pred HH
Q 003829 216 TT 217 (793)
Q Consensus 216 ~~ 217 (793)
.+
T Consensus 112 ~g 113 (243)
T PRK10866 112 RG 113 (243)
T ss_pred HH
Confidence 33
No 189
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.49 E-value=0.0017 Score=66.15 Aligned_cols=125 Identities=16% Similarity=0.123 Sum_probs=83.9
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHH
Q 003829 597 KGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDS--GFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDII 674 (793)
Q Consensus 597 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 674 (793)
.+.+.+......+++.+....+++++..++.+.... ....-..+..+++..|...|..++++.+++.=...|+-||..
T Consensus 60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~ 139 (429)
T PF10037_consen 60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNF 139 (429)
T ss_pred cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence 344455666666777777777777777777777654 111222334577777777777777877777777777777877
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 003829 675 SYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAAD 721 (793)
Q Consensus 675 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 721 (793)
++|.|++.+.+.|++..|.++..+|..++...+..++...+.+|.+-
T Consensus 140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 88888888888888888877777777665555555655555555544
No 190
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=97.48 E-value=0.21 Score=53.25 Aligned_cols=21 Identities=19% Similarity=0.232 Sum_probs=12.7
Q ss_pred CHHHHHHHHHHHHhcCChHHH
Q 003829 313 DKVTYNALLDVYGKCRRPKEA 333 (793)
Q Consensus 313 ~~~~~~~li~~~~~~g~~~~A 333 (793)
|..+|.-=|+.+|+..|...|
T Consensus 837 Na~afgF~is~L~kL~dTKsa 857 (1102)
T KOG1924|consen 837 NAQAFGFNISFLCKLRDTKSA 857 (1102)
T ss_pred cchhhccchHHHHhhcccccc
Confidence 555666566777776655444
No 191
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.47 E-value=0.0023 Score=62.33 Aligned_cols=133 Identities=11% Similarity=-0.004 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH----hCCC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH----CC-CCCCH
Q 003829 604 PTLNAMISIYGRRQMVAKTNEILHFMN----DSGF-TPSLTTYNTLMYMYSRSENFARAEDVLREILA----KG-IKPDI 673 (793)
Q Consensus 604 ~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~-~~~~~ 673 (793)
..|..|.+.|.-.|+++.|+...+.-. +.|- ......+..+.+++.-.|+++.|.+.|+.... .| -....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 356777777777899999987765433 2221 11233567788899999999999999887553 22 11234
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--C---CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003829 674 ISYNTVIFAYCRNGRMKEASRIFSEMRD--S---GLVPDVITYNTFVASYAADSLFVEALDVVRYMIK 736 (793)
Q Consensus 674 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~---~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 736 (793)
.+...|.+.|.-..++++|+.++++-+. + +..-....+..|+.+|...|..++|+.+.+.-++
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 5667888888888899999999877553 1 1112347889999999999999999998887664
No 192
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.46 E-value=0.00017 Score=43.35 Aligned_cols=26 Identities=54% Similarity=0.790 Sum_probs=10.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003829 352 YNSLISAYARDGLLEEAMELKTQMVE 377 (793)
Q Consensus 352 ~~~li~~~~~~g~~~~A~~~~~~m~~ 377 (793)
|+.++++|++.|++++|.++|++|.+
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 34444444444444444444444433
No 193
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.46 E-value=0.0026 Score=57.06 Aligned_cols=49 Identities=24% Similarity=0.430 Sum_probs=33.5
Q ss_pred CHHHHHHHHHHHH-----HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003829 207 DVYAYTSLITTYA-----SNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGK 255 (793)
Q Consensus 207 ~~~~~~~l~~~~~-----~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~ 255 (793)
+..+|..++..+. +.|..+-....+..|.+.|+.-|..+|+.|++.+=+
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK 99 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK 99 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC
Confidence 4445555555554 345666667777788888888888888888887765
No 194
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.45 E-value=0.00016 Score=43.46 Aligned_cols=29 Identities=41% Similarity=0.639 Sum_probs=17.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 003829 316 TYNALLDVYGKCRRPKEAMQVLREMKING 344 (793)
Q Consensus 316 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 344 (793)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45666666666666666666666665544
No 195
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.43 E-value=0.046 Score=50.32 Aligned_cols=140 Identities=14% Similarity=0.082 Sum_probs=101.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH-----HHHHHH
Q 003829 605 TLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDI-----ISYNTV 679 (793)
Q Consensus 605 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----~~~~~l 679 (793)
+.+.++..+.-.|.+.-....+++..+.+.+.++.....|+..-.+.||.+.|...|++..+..-..|. .+....
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 445566666667778888888888888776778888899999999999999999999977754323333 333344
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 003829 680 IFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYN 747 (793)
Q Consensus 680 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 747 (793)
...|.-.+++.+|...+.++...+.. |....|.-+-++.-.|+..+|++.++.|++. .|...+-+
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~e 323 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHE 323 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhh
Confidence 45667778899999999998874332 4555565555666679999999999999874 45544433
No 196
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.43 E-value=0.00069 Score=50.24 Aligned_cols=63 Identities=19% Similarity=0.289 Sum_probs=44.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcC-ChHHHHHHHHHHHH
Q 003829 672 DIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPD-VITYNTFVASYAADS-LFVEALDVVRYMIK 736 (793)
Q Consensus 672 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~ 736 (793)
+..+|..++..+...|++++|+..|+++++ +.|+ ...|..++.+|...| ++++|++.+++.++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~--~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIE--LDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHH--HSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 345677777777777777777777777777 3443 466777777777777 57777777777765
No 197
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.42 E-value=0.0086 Score=56.81 Aligned_cols=122 Identities=9% Similarity=0.016 Sum_probs=94.9
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHH
Q 003829 624 EILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNG---RMKEASRIFSEMR 700 (793)
Q Consensus 624 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~ 700 (793)
.-++.-...+ |.|...|-.|...|...|+++.|..-|.+..+. -.++...+..+..++.... ...++..+|++++
T Consensus 143 a~Le~~L~~n-P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL-~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al 220 (287)
T COG4235 143 ARLETHLQQN-PGDAEGWDLLGRAYMALGRASDALLAYRNALRL-AGDNPEILLGLAEALYYQAGQQMTAKARALLRQAL 220 (287)
T ss_pred HHHHHHHHhC-CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Confidence 3344444444 789999999999999999999999999999986 2456777888887776553 5788999999999
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003829 701 DSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIV 750 (793)
Q Consensus 701 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 750 (793)
..+.. |......|+..+...|++.+|...++.|++. .+|+ ..+..++
T Consensus 221 ~~D~~-~iral~lLA~~afe~g~~~~A~~~Wq~lL~~-lp~~-~~rr~~i 267 (287)
T COG4235 221 ALDPA-NIRALSLLAFAAFEQGDYAEAAAAWQMLLDL-LPAD-DPRRSLI 267 (287)
T ss_pred hcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhc-CCCC-CchHHHH
Confidence 94332 5678888999999999999999999999986 3444 3344444
No 198
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.39 E-value=0.00068 Score=51.00 Aligned_cols=64 Identities=16% Similarity=0.188 Sum_probs=47.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHH
Q 003829 715 VASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKE 779 (793)
Q Consensus 715 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 779 (793)
...|.+.+++++|+++++.+++.+ +.+...|...+.++.+.|++++|.+.++++++.+|++...
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~ 65 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDA 65 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHH
Confidence 356777888888888888888742 2246677778888888888888888888888888865554
No 199
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.36 E-value=0.0035 Score=49.50 Aligned_cols=68 Identities=21% Similarity=0.345 Sum_probs=29.5
Q ss_pred CChHHHHHHHHHHHHcCC-CCChhHHHHHHHHHHhcC--------CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003829 328 RRPKEAMQVLREMKINGC-LPSIVTYNSLISAYARDG--------LLEEAMELKTQMVEIGITPDVFTYTTLLSGFE 395 (793)
Q Consensus 328 g~~~~A~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g--------~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 395 (793)
+++...-.+|+.+++.|+ .|++.+|+.++.+.++.. ++-+.+.+++.|+..+++|+..+|+.++..+.
T Consensus 39 ~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl~~Ll 115 (120)
T PF08579_consen 39 EDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVLGSLL 115 (120)
T ss_pred cchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHH
Confidence 444444444444444444 344444444444333221 12233444455555555555555555554443
No 200
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.28 E-value=0.0011 Score=48.49 Aligned_cols=56 Identities=16% Similarity=0.180 Sum_probs=33.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003829 679 VIFAYCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSLFVEALDVVRYMIK 736 (793)
Q Consensus 679 l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 736 (793)
++..+...|++++|.+.|+++++.. | +...+..++.++...|++++|+..++++++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD--PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS--TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3445566666666666666666632 3 335566666666666666666666666655
No 201
>PRK15331 chaperone protein SicA; Provisional
Probab=97.28 E-value=0.016 Score=49.86 Aligned_cols=97 Identities=11% Similarity=0.037 Sum_probs=70.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 003829 678 TVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLN 757 (793)
Q Consensus 678 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 757 (793)
....-+...|++++|..+|+-+.-.+.. +..-+..|+.++-..+++++|+..|..+...+ .-|+..+-..+.++...|
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~ 119 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMR 119 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhC
Confidence 4445566788888888888888775443 55666777777878888888888888876543 234555667788888888
Q ss_pred CHHHHHHHHHHHhhCCCCCC
Q 003829 758 QRYEAITFVNNLSKLDPHVT 777 (793)
Q Consensus 758 ~~~~A~~~~~~~~~~~~~~~ 777 (793)
+.++|+.-|+.+++. |+..
T Consensus 120 ~~~~A~~~f~~a~~~-~~~~ 138 (165)
T PRK15331 120 KAAKARQCFELVNER-TEDE 138 (165)
T ss_pred CHHHHHHHHHHHHhC-cchH
Confidence 888888888888873 4433
No 202
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.27 E-value=0.11 Score=52.10 Aligned_cols=173 Identities=11% Similarity=0.077 Sum_probs=116.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHc---cCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 003829 604 PTLNAMISIYGRRQMVAKTNEILHFMNDSG---FTPSLTTYNTLMYMYSR---SENFARAEDVLREILAKGIKPDIISYN 677 (793)
Q Consensus 604 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~ 677 (793)
.+...++-.|....+++...++.+.+.... +.....+--..+.++.+ .|+.++|++++..+....-.++..+|.
T Consensus 142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~g 221 (374)
T PF13281_consen 142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLG 221 (374)
T ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHH
Confidence 344456667888999999999999998651 22233334456667777 899999999999966655677888998
Q ss_pred HHHHHHH----H-----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH----HHHHHH----HHHHHcCCC
Q 003829 678 TVIFAYC----R-----NGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFV----EALDVV----RYMIKQGCK 740 (793)
Q Consensus 678 ~l~~~~~----~-----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~----~A~~~~----~~~~~~~~~ 740 (793)
.++..|- . ....++|...|.+.-+ +.|+...=-.++..+...|... +..++. ..+.++|..
T Consensus 222 L~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe--~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~ 299 (374)
T PF13281_consen 222 LLGRIYKDLFLESNFTDRESLDKAIEWYRKGFE--IEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSL 299 (374)
T ss_pred HHHHHHHHHHHHcCccchHHHHHHHHHHHHHHc--CCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccc
Confidence 8887763 2 2247888888888887 4565533333333444444322 222222 222234432
Q ss_pred ---CCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCH
Q 003829 741 ---PNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTK 778 (793)
Q Consensus 741 ---p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 778 (793)
.|-..+..++.++.-.|++++|..++++|.+..|..-.
T Consensus 300 ~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~ 340 (374)
T PF13281_consen 300 EKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWE 340 (374)
T ss_pred cccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchh
Confidence 23445567888899999999999999999999877654
No 203
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.21 E-value=0.084 Score=56.93 Aligned_cols=118 Identities=14% Similarity=0.058 Sum_probs=58.7
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Q 003829 283 NTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKV--TYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYA 360 (793)
Q Consensus 283 ~~l~~~~~~~~~~~~A~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 360 (793)
..-+...++...++-|..+.+ ..+..++.. ....-.+-+.+.|++++|...|-+-... .+|. .+|.-|.
T Consensus 338 e~kL~iL~kK~ly~~Ai~LAk---~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfL 408 (933)
T KOG2114|consen 338 ETKLDILFKKNLYKVAINLAK---SQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFL 408 (933)
T ss_pred HHHHHHHHHhhhHHHHHHHHH---hcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhc
Confidence 344555555566666655432 222222211 1222233444566666666665554332 2222 2344455
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003829 361 RDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEM 410 (793)
Q Consensus 361 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 410 (793)
...++.+-..+++.+.+.|+. +...-+.|+.+|.+.++.++-.+..+..
T Consensus 409 daq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~ 457 (933)
T KOG2114|consen 409 DAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKC 457 (933)
T ss_pred CHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcC
Confidence 555566666666666666543 3344455666666666666655554443
No 204
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.20 E-value=0.28 Score=48.82 Aligned_cols=64 Identities=23% Similarity=0.254 Sum_probs=36.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003829 176 IAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVY 253 (793)
Q Consensus 176 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~ 253 (793)
|..++......|+.+.|..+++. +|+.. .=|-.+.+.|+.+.| +.+..+.| .||. +|.+|+..-
T Consensus 3 ~a~IA~~A~~~GR~~LA~~LL~~------Ep~~~---~qVplLL~m~e~e~A---L~kAi~Sg-D~DL-i~~vLl~L~ 66 (319)
T PF04840_consen 3 YAEIARKAYEEGRPKLATKLLEL------EPRAS---KQVPLLLKMGEDELA---LNKAIESG-DTDL-IYLVLLHLK 66 (319)
T ss_pred HHHHHHHHHHcChHHHHHHHHHc------CCChH---HHHHHHhcCCchHHH---HHHHHHcC-CccH-HHHHHHHHH
Confidence 45566667778888888776652 22221 224455677777766 45555555 3343 355555443
No 205
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.19 E-value=0.0013 Score=48.53 Aligned_cols=63 Identities=24% Similarity=0.314 Sum_probs=42.0
Q ss_pred HhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003829 184 GKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVI 249 (793)
Q Consensus 184 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 249 (793)
...|++++|.++|+.+....+. +..++..++.+|.+.|++++|..+++++... .|+...|..+
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l 64 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQL 64 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHH
Confidence 3567777777777777766544 6677777777777777777777777777765 3454444433
No 206
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.19 E-value=0.089 Score=54.80 Aligned_cols=99 Identities=12% Similarity=0.155 Sum_probs=57.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003829 176 IAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGK 255 (793)
Q Consensus 176 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~ 255 (793)
+..-+..+..+|.+++|.++- +......-|..|......+=+++-|++.|-+....
T Consensus 559 ~~~~m~q~Ieag~f~ea~~ia------clgVv~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl------------------ 614 (1081)
T KOG1538|consen 559 QSAPMYQYIERGLFKEAYQIA------CLGVTDTDWRELAMEALEALDFETARKAYIRVRDL------------------ 614 (1081)
T ss_pred ccccchhhhhccchhhhhccc------ccceecchHHHHHHHHHhhhhhHHHHHHHHHHhcc------------------
Confidence 334445566777777765432 12223445666666666666667777666665432
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 003829 256 MGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEE 304 (793)
Q Consensus 256 ~g~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~ 304 (793)
.+-+.+.-+++++++|-.|+.... ...|+-.|.+.+|.++|.+
T Consensus 615 ---~~L~li~EL~~~k~rge~P~~iLl---A~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 615 ---RYLELISELEERKKRGETPNDLLL---ADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred ---HHHHHHHHHHHHHhcCCCchHHHH---HHHHHhhhhHHHHHHHHHH
Confidence 233444456677777777776532 3345566778888877743
No 207
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.16 E-value=0.053 Score=50.50 Aligned_cols=175 Identities=18% Similarity=0.104 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhCCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003829 174 SVIAVLISMLGKEGKVSVAASLLHGLHKDGFD--IDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILN 251 (793)
Q Consensus 174 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~ 251 (793)
..+......+...|++.+|...|+.+....+. ....+.-.++.++.+.|+++.|...|+++.+.-+.-....+...+.
T Consensus 6 ~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~ 85 (203)
T PF13525_consen 6 EALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYML 85 (203)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHH
Confidence 34444555566778888888888877654222 2334566677778888888888888888776533222222222222
Q ss_pred HHHhcC---------C---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 003829 252 VYGKMG---------M---PWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNA 319 (793)
Q Consensus 252 ~~~~~g---------~---~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~ 319 (793)
+.+... . ...+|...|+ .++.-|=...-..+|...+..+... =...--.
T Consensus 86 g~~~~~~~~~~~~~~~D~~~~~~A~~~~~---------------~li~~yP~S~y~~~A~~~l~~l~~~----la~~e~~ 146 (203)
T PF13525_consen 86 GLSYYKQIPGILRSDRDQTSTRKAIEEFE---------------ELIKRYPNSEYAEEAKKRLAELRNR----LAEHELY 146 (203)
T ss_dssp HHHHHHHHHHHH-TT---HHHHHHHHHHH---------------HHHHH-TTSTTHHHHHHHHHHHHHH----HHHHHHH
T ss_pred HHHHHHhCccchhcccChHHHHHHHHHHH---------------HHHHHCcCchHHHHHHHHHHHHHHH----HHHHHHH
Confidence 222111 0 1112222222 2333333334444554444444322 0111123
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCC---hhHHHHHHHHHHhcCCHHHH
Q 003829 320 LLDVYGKCRRPKEAMQVLREMKINGCLPS---IVTYNSLISAYARDGLLEEA 368 (793)
Q Consensus 320 li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A 368 (793)
+...|.+.|.+..|..-++.+++. .+-+ ..+...++.+|.+.|..+.|
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~-yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIEN-YPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHH-STTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHH-CCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 455666667777776666666654 1111 12345556666666665533
No 208
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.15 E-value=0.013 Score=56.56 Aligned_cols=99 Identities=16% Similarity=0.146 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC----HHH
Q 003829 639 TTYNTLMYMYSRSENFARAEDVLREILAKGIKPD----IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPD----VIT 710 (793)
Q Consensus 639 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~ 710 (793)
..|...+..+.+.|++++|+..|+.+++. .|+ ...+..++.+|...|++++|...|+.+.+. .|+ ...
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~--yP~s~~~~dA 219 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKN--YPKSPKAADA 219 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhHH
Confidence 33555555556678899999999998876 333 357778888899999999999999999873 232 355
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH
Q 003829 711 YNTFVASYAADSLFVEALDVVRYMIKQGCKPNQ 743 (793)
Q Consensus 711 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 743 (793)
+..++.++...|+.++|..+|+++++. .|+.
T Consensus 220 l~klg~~~~~~g~~~~A~~~~~~vi~~--yP~s 250 (263)
T PRK10803 220 MFKVGVIMQDKGDTAKAKAVYQQVIKK--YPGT 250 (263)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCC
Confidence 666777888899999999999998874 3543
No 209
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.14 E-value=0.035 Score=45.86 Aligned_cols=89 Identities=17% Similarity=0.099 Sum_probs=46.3
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHH
Q 003829 645 MYMYSRSENFARAEDVLREILAKGIKPD--IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPD----VITYNTFVASY 718 (793)
Q Consensus 645 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~ 718 (793)
..++-..|+.++|+.+|++....|+... ...+..+...+...|++++|..++++.... .|+ ......+..++
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~--~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE--FPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHHHHHH
Confidence 3445555666666666666665554433 234445555566666666666666666552 122 12222233355
Q ss_pred HhcCChHHHHHHHHHHH
Q 003829 719 AADSLFVEALDVVRYMI 735 (793)
Q Consensus 719 ~~~g~~~~A~~~~~~~~ 735 (793)
...|+.++|++.+-..+
T Consensus 86 ~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHCCCHHHHHHHHHHHH
Confidence 55566666666655544
No 210
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.13 E-value=0.043 Score=51.11 Aligned_cols=174 Identities=14% Similarity=0.024 Sum_probs=106.6
Q ss_pred HHHHHHHhccCCChHHHHHHHHHHHhccCCCCCccchHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHH--HHHH
Q 003829 136 LLGIVKGLGFHKKTDLALDVFEWFRSCCSKDGNLVLRGSVIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVY--AYTS 213 (793)
Q Consensus 136 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~ 213 (793)
+-.........|++..|...|+.+.. ..|..+....+...++.++.+.|++..|...++.+++..+..... ++-.
T Consensus 8 lY~~a~~~~~~g~y~~Ai~~f~~l~~---~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~ 84 (203)
T PF13525_consen 8 LYQKALEALQQGDYEEAIKLFEKLID---RYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYM 84 (203)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHH---H-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH---HCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHH
Confidence 33444555678999999999999987 345566788889999999999999999999999988764432222 2222
Q ss_pred HHHHHHHc-----------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHH
Q 003829 214 LITTYASN-----------GRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTF 282 (793)
Q Consensus 214 l~~~~~~~-----------g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~~~~p~~~~~ 282 (793)
++.++... +...+|+..|+.+.+. |-... -..+|...+..+... =...-
T Consensus 85 ~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~---------------yP~S~-y~~~A~~~l~~l~~~----la~~e 144 (203)
T PF13525_consen 85 LGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKR---------------YPNSE-YAEEAKKRLAELRNR----LAEHE 144 (203)
T ss_dssp HHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH----------------TTST-THHHHHHHHHHHHHH----HHHHH
T ss_pred HHHHHHHhCccchhcccChHHHHHHHHHHHHHHHH---------------CcCch-HHHHHHHHHHHHHHH----HHHHH
Confidence 33332221 1234555555555544 33333 344554444444321 01111
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChHHHH
Q 003829 283 NTLISCCRRGSLHEEAAGVFEEMKLAGFSPDK----VTYNALLDVYGKCRRPKEAM 334 (793)
Q Consensus 283 ~~l~~~~~~~~~~~~A~~~~~~~~~~g~~~~~----~~~~~li~~~~~~g~~~~A~ 334 (793)
..+...|.+.|.+..|..-++.+++. -|+. .....++.+|.+.|..+.|.
T Consensus 145 ~~ia~~Y~~~~~y~aA~~r~~~v~~~--yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 145 LYIARFYYKRGKYKAAIIRFQYVIEN--YPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHHCTT-HHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 23456788999999999999999886 2333 34566788888888877543
No 211
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.10 E-value=0.0093 Score=55.85 Aligned_cols=105 Identities=16% Similarity=0.162 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCC-HHHHHHHH
Q 003829 675 SYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP--DVITYNTFVASYAADSLFVEALDVVRYMIKQ-GCKPN-QNTYNSIV 750 (793)
Q Consensus 675 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~-~~~~~~l~ 750 (793)
.|+.-+ .+.+.|++.+|...|...++....- ....+.-|+.++...|++++|..+|..+.+. +-.|. ++.+..|+
T Consensus 144 ~Y~~A~-~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAAL-DLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHH-HHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 354444 3567788999999998888842221 1255677888999999999999999988763 22222 57888888
Q ss_pred HHHHccCCHHHHHHHHHHHhhCCCCCCHHH
Q 003829 751 DGYCKLNQRYEAITFVNNLSKLDPHVTKEL 780 (793)
Q Consensus 751 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 780 (793)
.+..+.|+.++|..+|+++.+..|+.+...
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t~aA~ 252 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGTDAAK 252 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCCHHHH
Confidence 889999999999999999999999876654
No 212
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.04 E-value=0.15 Score=47.16 Aligned_cols=136 Identities=11% Similarity=0.040 Sum_probs=69.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHH-----HHHHHH
Q 003829 425 LIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFN-----TLISAY 499 (793)
Q Consensus 425 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~-----~l~~~~ 499 (793)
++..+...|.+.-....+.++++.+.+.++.....|.+.-.+.|+.+.|...|++..+..-..+..+++ .....|
T Consensus 183 ~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~ 262 (366)
T KOG2796|consen 183 MANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLH 262 (366)
T ss_pred HHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhhe
Confidence 333333344444444444444443333334444444444444444444444444333322122222222 222345
Q ss_pred hccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHhhHH
Q 003829 500 SRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYS 563 (793)
Q Consensus 500 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 563 (793)
...+++..|...+.+....+.. ++..-|.-.-++.-.|+..+|.+.++.|... .|...+-+
T Consensus 263 lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~e 323 (366)
T KOG2796|consen 263 LGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHE 323 (366)
T ss_pred ecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhh
Confidence 5667788888888887776544 5555554444455568888999999988875 44444433
No 213
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.03 E-value=0.38 Score=47.27 Aligned_cols=281 Identities=16% Similarity=0.141 Sum_probs=158.7
Q ss_pred hcCChHHHHHHHHHHhhCCCCCCHHHHHHHH--HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH----HHHHHHHHhcCC
Q 003829 185 KEGKVSVAASLLHGLHKDGFDIDVYAYTSLI--TTYASNGRYREAVMVFKKMEEEGCKPTLITY----NVILNVYGKMGM 258 (793)
Q Consensus 185 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~----~~ll~~~~~~g~ 258 (793)
..|+-..|.++-.+..+. +.-|..-.-.|+ +.-.-.|+++.|.+-|+.|.. |..+- ..|.-.-.+.|
T Consensus 96 gAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-----dPEtRllGLRgLyleAqr~G- 168 (531)
T COG3898 96 GAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-----DPETRLLGLRGLYLEAQRLG- 168 (531)
T ss_pred ccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-----ChHHHHHhHHHHHHHHHhcc-
Confidence 466777777776654322 111222222222 222346888888888888875 33332 22222334566
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC-CCCCHHH--HHHHHHHHH---hcCChHH
Q 003829 259 PWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAG-FSPDKVT--YNALLDVYG---KCRRPKE 332 (793)
Q Consensus 259 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g-~~~~~~~--~~~li~~~~---~~g~~~~ 332 (793)
..+.|...-++.-..-.. -.-....++...|..|+++.|+++.+.-+... +.+++.- -..|+.+-. -..+...
T Consensus 169 areaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~ 247 (531)
T COG3898 169 AREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPAS 247 (531)
T ss_pred cHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHH
Confidence 677777777776654332 34566777777888888888888887665442 2334322 223332211 1235566
Q ss_pred HHHHHHHHHHcCCCCChh-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003829 333 AMQVLREMKINGCLPSIV-TYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMR 411 (793)
Q Consensus 333 A~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 411 (793)
|...-.+..+ ..||.+ .-..-..++.+.|++.++-.+++.+-+....|+. . .+..+.+.|+. +..-++...
T Consensus 248 Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~i--a--~lY~~ar~gdt--a~dRlkRa~ 319 (531)
T COG3898 248 ARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDI--A--LLYVRARSGDT--ALDRLKRAK 319 (531)
T ss_pred HHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHH--H--HHHHHhcCCCc--HHHHHHHHH
Confidence 6666555544 445544 3334456778888888888888888776444442 1 12223344443 222222222
Q ss_pred HC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-hCCChHHHHHHHHHHHHc
Q 003829 412 SA-GCK-PNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFG-QNGMDSEVSGVFKEMKRA 483 (793)
Q Consensus 412 ~~-~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~m~~~ 483 (793)
+. ..+ .+......+.......|++..|..--+..... .|....|..|...-. ..|+-.++...+.+..+.
T Consensus 320 ~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 320 KLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 11 112 24556666677777778887777666655543 566777777776654 348888888888777765
No 214
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.03 E-value=0.0019 Score=49.30 Aligned_cols=63 Identities=24% Similarity=0.345 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHc--CCC---CC-HHHHHHHHHHHHccCCHHHHHHHHHHHhh
Q 003829 709 ITYNTFVASYAADSLFVEALDVVRYMIKQ--GCK---PN-QNTYNSIVDGYCKLNQRYEAITFVNNLSK 771 (793)
Q Consensus 709 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~---p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 771 (793)
.+|+.++.+|...|++++|++.++++++. ... |+ ..++..++.+|...|++++|+++++++++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45677777777777777777777777632 011 12 45567777777777777777777777765
No 215
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.02 E-value=0.017 Score=52.05 Aligned_cols=30 Identities=40% Similarity=0.432 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003829 366 EEAMELKTQMVEIGITPDVFTYTTLLSGFE 395 (793)
Q Consensus 366 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 395 (793)
+-|++++++|...|+-||..++..+++.+.
T Consensus 120 ~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG 149 (228)
T PF06239_consen 120 ECAIDLLEQMENNGVMPDKETEQMLLNIFG 149 (228)
T ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHhc
Confidence 344555555555555555555555555553
No 216
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.00 E-value=0.064 Score=55.80 Aligned_cols=273 Identities=14% Similarity=0.148 Sum_probs=135.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003829 385 FTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVF 464 (793)
Q Consensus 385 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 464 (793)
..+.+=+..|...|.+++|.++-.- |+ ...-|..|..-....=+++-|.+.|.++...
T Consensus 557 vp~~~~m~q~Ieag~f~ea~~iacl----gV--v~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl---------------- 614 (1081)
T KOG1538|consen 557 VPQSAPMYQYIERGLFKEAYQIACL----GV--TDTDWRELAMEALEALDFETARKAYIRVRDL---------------- 614 (1081)
T ss_pred ccccccchhhhhccchhhhhccccc----ce--ecchHHHHHHHHHhhhhhHHHHHHHHHHhcc----------------
Confidence 3344445567777888877654221 11 1222444444444444555555555544321
Q ss_pred HhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHH-----HHHHHHHhcCC
Q 003829 465 GQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYN-----AVLAALARGGM 539 (793)
Q Consensus 465 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~g~ 539 (793)
.+-+.+.-++++.++|-.|+... +...++-.|++.+|.++|.+--..+- -.+.|+ -+..-+...|.
T Consensus 615 ----~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~G~enR--AlEmyTDlRMFD~aQE~~~~g~ 685 (1081)
T KOG1538|consen 615 ----RYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKRSGHENR--ALEMYTDLRMFDYAQEFLGSGD 685 (1081)
T ss_pred ----HHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHcCchhh--HHHHHHHHHHHHHHHHHhhcCC
Confidence 12222333455666666555443 23334445666666666544211100 011111 12233444454
Q ss_pred hHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 003829 540 WEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSERAFLELKKKGFSPDIPTLNAMISIYGRRQMV 619 (793)
Q Consensus 540 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 619 (793)
.++-..+.++-.+- .-+..--......+...|+.++|+.+.-+----+...++..+--..+..+...+...+.+...+
T Consensus 686 ~~eKKmL~RKRA~W--Ar~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~ 763 (1081)
T KOG1538|consen 686 PKEKKMLIRKRADW--ARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSP 763 (1081)
T ss_pred hHHHHHHHHHHHHH--hhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhcccc
Confidence 44444333332110 0011111223444556677777766532210001111111111123445566666666677778
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHH-----------HHHHHHHHHHHcCC
Q 003829 620 AKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDII-----------SYNTVIFAYCRNGR 688 (793)
Q Consensus 620 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-----------~~~~l~~~~~~~g~ 688 (793)
.-|-++|.+|-+. ..++......+++.+|..+.++..+. .+|+. -|..--.+|.+.|+
T Consensus 764 gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr 832 (1081)
T KOG1538|consen 764 GLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAENDRFEEAQKAFHKAGR 832 (1081)
T ss_pred chHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhhhhHHHHHHHHHHhcc
Confidence 8888888887543 25677888899999999998887763 44431 12223356777777
Q ss_pred HHHHHHHHHHHHH
Q 003829 689 MKEASRIFSEMRD 701 (793)
Q Consensus 689 ~~~A~~~~~~~~~ 701 (793)
-.+|.++++++..
T Consensus 833 ~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 833 QREAVQVLEQLTN 845 (1081)
T ss_pred hHHHHHHHHHhhh
Confidence 7788877777765
No 217
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.94 E-value=0.39 Score=47.31 Aligned_cols=195 Identities=10% Similarity=0.102 Sum_probs=109.3
Q ss_pred cCC-CHHHHHHHHHHHHhHHHHHH-HHHCCCCCC-----HHHHHHHHHHHHhcCCH---HHHHHHHHHHHhCCCCCCHHH
Q 003829 571 NGR-EIDQMLALSEEIYSERAFLE-LKKKGFSPD-----IPTLNAMISIYGRRQMV---AKTNEILHFMNDSGFTPSLTT 640 (793)
Q Consensus 571 ~~~-~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~-----~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~ 640 (793)
+.+ +++.|..++++..+ .+.. -......++ ..++..++.+|...+.. ++|..+++.+... .+..+.+
T Consensus 47 ~~~~~~~~a~~wL~~a~~--~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~ 123 (278)
T PF08631_consen 47 SKKDKYEEAVKWLQRAYD--ILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEV 123 (278)
T ss_pred HcCCChHHHHHHHHHHHH--HHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHH
Confidence 445 88888888877654 1111 111122233 24667778888777654 4566666667544 2334566
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH---HHcCCHHHHHHHHHHHHHCCCCCCHH-HH----H
Q 003829 641 YNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAY---CRNGRMKEASRIFSEMRDSGLVPDVI-TY----N 712 (793)
Q Consensus 641 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~~A~~~~~~~~~~~~~p~~~-~~----~ 712 (793)
+-.-+..+.+.++.+++.+++.+|+.. +.-....+...+..+ .. .....|...++.++...+.|... .. .
T Consensus 124 ~~L~l~il~~~~~~~~~~~~L~~mi~~-~~~~e~~~~~~l~~i~~l~~-~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl 201 (278)
T PF08631_consen 124 FLLKLEILLKSFDEEEYEEILMRMIRS-VDHSESNFDSILHHIKQLAE-KSPELAAFCLDYLLLNRFKSSEDQWLEKLVL 201 (278)
T ss_pred HHHHHHHHhccCChhHHHHHHHHHHHh-cccccchHHHHHHHHHHHHh-hCcHHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence 656677777789999999999999986 332344555555544 33 33467777777777644544332 11 1
Q ss_pred HHHHHHHhcCC------hHHHHHHHHHHHH-cCCCCCHHH---HHHH----HHHHHccCCHHHHHHHHHHHh
Q 003829 713 TFVASYAADSL------FVEALDVVRYMIK-QGCKPNQNT---YNSI----VDGYCKLNQRYEAITFVNNLS 770 (793)
Q Consensus 713 ~l~~~~~~~g~------~~~A~~~~~~~~~-~~~~p~~~~---~~~l----~~~~~~~g~~~~A~~~~~~~~ 770 (793)
..+......++ .+...+++....+ .+.+.+..+ ...| +..+.+.+++++|.++|+-++
T Consensus 202 ~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 202 TRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 11122222222 3333444443222 111222222 2233 334778999999999998655
No 218
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.80 E-value=0.15 Score=49.49 Aligned_cols=126 Identities=10% Similarity=0.044 Sum_probs=52.5
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----CCCCCCH------
Q 003829 644 LMYMYSRSENFARAEDVLREILAKGIK-----PDIISYNTVIFAYCRNGRMKEASRIFSEMRD----SGLVPDV------ 708 (793)
Q Consensus 644 l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p~~------ 708 (793)
+..++.-.+.++++++.|+...+.-.. ....++..|...|....++++|.-+..++.+ .++. |.
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~-d~~~kyr~ 206 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLK-DWSLKYRA 206 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcC-chhHHHHH
Confidence 334444444455555555544432100 0123444445555555555555544444433 1111 11
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHH----cCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHh
Q 003829 709 ITYNTFVASYAADSLFVEALDVVRYMIK----QGCKPN-QNTYNSIVDGYCKLNQRYEAITFVNNLS 770 (793)
Q Consensus 709 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 770 (793)
.....+..+|...|+.-+|.+..++..+ .|-.+- ......+++.|...|+.+.|..-|+.+.
T Consensus 207 ~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 207 MSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 1123334445555555555555544432 221111 2233344455555555555554444443
No 219
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.79 E-value=0.57 Score=47.16 Aligned_cols=103 Identities=12% Similarity=0.070 Sum_probs=67.9
Q ss_pred HHHHHHHHHHhccCCCCCccchHHHHHHHHHHHHhcCChHHHHHHHHHHhhCC---CCCCHHHHHHHHHHHHH---cCCH
Q 003829 151 LALDVFEWFRSCCSKDGNLVLRGSVIAVLISMLGKEGKVSVAASLLHGLHKDG---FDIDVYAYTSLITTYAS---NGRY 224 (793)
Q Consensus 151 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~g~~ 224 (793)
+..+.+..++. +.+.....+..+...++-+|....+++...++++.+.... ...+..+-...+-++-+ .|+.
T Consensus 121 ~l~~~L~~i~~--rLd~~~~ls~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdr 198 (374)
T PF13281_consen 121 ELAKELRRIRQ--RLDDPELLSPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDR 198 (374)
T ss_pred HHHHHHHHHHH--hhCCHhhcChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCH
Confidence 33444455544 2222234566666777777889999999999999886651 11123333344455556 8899
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003829 225 REAVMVFKKMEEEGCKPTLITYNVILNVYGK 255 (793)
Q Consensus 225 ~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~ 255 (793)
++|+.++..+....-.++..+|..+++.|..
T Consensus 199 e~Al~il~~~l~~~~~~~~d~~gL~GRIyKD 229 (374)
T PF13281_consen 199 EKALQILLPVLESDENPDPDTLGLLGRIYKD 229 (374)
T ss_pred HHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Confidence 9999999986655557788888888887743
No 220
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.78 E-value=0.026 Score=55.82 Aligned_cols=129 Identities=12% Similarity=0.043 Sum_probs=69.6
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHC-----CCCCC---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 003829 643 TLMYMYSRSENFARAEDVLREILAK-----GIKPD---------IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDV 708 (793)
Q Consensus 643 ~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~---------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 708 (793)
.-.+.|.+.|++..|...|+++... +..+. ..+++.+..+|.+.+++.+|++..++.++.+.. |.
T Consensus 213 e~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~-N~ 291 (397)
T KOG0543|consen 213 ERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPN-NV 291 (397)
T ss_pred HhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCC-ch
Confidence 3455677788888888888776643 11111 123445555666666666666666666663222 44
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHH-HHHHHHHHhhCCC
Q 003829 709 ITYNTFVASYAADSLFVEALDVVRYMIKQGCKPN-QNTYNSIVDGYCKLNQRYE-AITFVNNLSKLDP 774 (793)
Q Consensus 709 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~ 774 (793)
..+..-+.+|...|+++.|+..|+++++ +.|+ ..+-+-|+.+--+..++.+ ..++|..|+..-.
T Consensus 292 KALyRrG~A~l~~~e~~~A~~df~ka~k--~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 292 KALYRRGQALLALGEYDLARDDFQKALK--LEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKLA 357 (397)
T ss_pred hHHHHHHHHHHhhccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 5555556666666666666666666665 3443 3333344433333333222 3555666655533
No 221
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.77 E-value=1.2 Score=48.71 Aligned_cols=183 Identities=14% Similarity=0.129 Sum_probs=123.7
Q ss_pred cccHHHHHHHhccCCChHHHHHHHHHHHhccCCCCCccchHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHH
Q 003829 133 GADLLGIVKGLGFHKKTDLALDVFEWFRSCCSKDGNLVLRGSVIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYT 212 (793)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 212 (793)
.-++..-+..+.+-..+..|+.+-..-.. +............+.|.+.|++++|...+-+-+.. .+| .
T Consensus 334 ek~le~kL~iL~kK~ly~~Ai~LAk~~~~------d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s 401 (933)
T KOG2114|consen 334 EKDLETKLDILFKKNLYKVAINLAKSQHL------DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----S 401 (933)
T ss_pred eccHHHHHHHHHHhhhHHHHHHHHHhcCC------CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----H
Confidence 34455566666677778888777665322 11123445667778888999999999888776643 121 2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC
Q 003829 213 SLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRG 292 (793)
Q Consensus 213 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 292 (793)
.++.-|....+..+-..+++.+.+.|.. +...-..|+.+|.+.+ +.++..++.+... .|.. ..-....+..|.+.
T Consensus 402 ~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlk-d~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~s 476 (933)
T KOG2114|consen 402 EVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLK-DVEKLTEFISKCD-KGEW--FFDVETALEILRKS 476 (933)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhc-chHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHh
Confidence 4666777888888888999999999865 6666788999999999 8888777766543 2211 11245566777777
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 003829 293 SLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREM 340 (793)
Q Consensus 293 ~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 340 (793)
+-.++|..+-..... .......++ -..|++++|++.+..+
T Consensus 477 nyl~~a~~LA~k~~~-----he~vl~ill---e~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 477 NYLDEAELLATKFKK-----HEWVLDILL---EDLHNYEEALRYISSL 516 (933)
T ss_pred ChHHHHHHHHHHhcc-----CHHHHHHHH---HHhcCHHHHHHHHhcC
Confidence 777777766544432 333344443 4678999999999876
No 222
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.76 E-value=0.95 Score=47.57 Aligned_cols=187 Identities=12% Similarity=0.007 Sum_probs=95.2
Q ss_pred CHhhHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 003829 558 NELTYSSLLHAYANGREIDQMLALSEEIYSERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPS 637 (793)
Q Consensus 558 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 637 (793)
+..+|..-+.--.+.|+.+...-+++...-. +..-...|-..+.-....|+.+-|..++....+--.+..
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~----------cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~ 365 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIP----------CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKT 365 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhH----------HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCC
Confidence 4456666666666777777777777654320 011122333344444444777777666666555433222
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHH---HHHHHHHHCCCCCCH--HHH
Q 003829 638 LTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDI-ISYNTVIFAYCRNGRMKEAS---RIFSEMRDSGLVPDV--ITY 711 (793)
Q Consensus 638 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~---~~~~~~~~~~~~p~~--~~~ 711 (793)
+.+--.-....-..|++..|..+++.+.+. + |+. ..-..-+....+.|+.+.+. .++....+....+.. ..+
T Consensus 366 ~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e-~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~ 443 (577)
T KOG1258|consen 366 PIIHLLEARFEESNGNFDDAKVILQRIESE-Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLY 443 (577)
T ss_pred cHHHHHHHHHHHhhccHHHHHHHHHHHHhh-C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHH
Confidence 222111122233456788888888887765 3 442 22223344455667777766 333333221111111 122
Q ss_pred HHHHH-HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 003829 712 NTFVA-SYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLN 757 (793)
Q Consensus 712 ~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 757 (793)
...++ .+.-.++.+.|..++.++.+. ++++...|..++......+
T Consensus 444 ~~~~r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 444 VKFARLRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 22222 223346677777777777764 3445666666666555443
No 223
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.75 E-value=0.14 Score=52.32 Aligned_cols=108 Identities=11% Similarity=0.185 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHH
Q 003829 673 IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPN-QNTYNSIV 750 (793)
Q Consensus 673 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~ 750 (793)
..+-..+..++.+.|+.++|.+.+.+|.+....- ...+...|+.+|...+.+.++..++.+.-+...+.. ...|+..+
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence 3344557778888999999999999998742221 235778899999999999999999998754433333 34555443
Q ss_pred HHHHccCC---------------HHHHHHHHHHHhhCCCCCCHHH
Q 003829 751 DGYCKLNQ---------------RYEAITFVNNLSKLDPHVTKEL 780 (793)
Q Consensus 751 ~~~~~~g~---------------~~~A~~~~~~~~~~~~~~~~~~ 780 (793)
-.+...|+ -..|++.++++.+.+|..+...
T Consensus 339 LkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YL 383 (539)
T PF04184_consen 339 LKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYL 383 (539)
T ss_pred HHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhh
Confidence 33333333 1347789999999999877643
No 224
>PRK11906 transcriptional regulator; Provisional
Probab=96.73 E-value=0.059 Score=54.81 Aligned_cols=160 Identities=11% Similarity=0.048 Sum_probs=112.7
Q ss_pred CHHHHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHc---------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 003829 618 MVAKTNEILHFMNDS-GFTP-SLTTYNTLMYMYSR---------SENFARAEDVLREILAKGIKPDIISYNTVIFAYCRN 686 (793)
Q Consensus 618 ~~~~A~~~~~~~~~~-~~~~-~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 686 (793)
..+.|..+|.+.... ...| ....|..+..++.. ..+..+|.+..++..+.+ +.|......++.+....
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 567788899998822 1233 35556666665432 234677888888888875 45788888888888888
Q ss_pred CCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHccCCHHHH
Q 003829 687 GRMKEASRIFSEMRDSGLVPDV-ITYNTFVASYAADSLFVEALDVVRYMIKQGCKPN---QNTYNSIVDGYCKLNQRYEA 762 (793)
Q Consensus 687 g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A 762 (793)
++++.|...|+++.. +.||. .+|...+..+.-.|+.++|.+.+++.++ +.|. ..+....++.|+.. ..++|
T Consensus 352 ~~~~~a~~~f~rA~~--L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr--LsP~~~~~~~~~~~~~~~~~~-~~~~~ 426 (458)
T PRK11906 352 GQAKVSHILFEQAKI--HSTDIASLYYYRALVHFHNEKIEEARICIDKSLQ--LEPRRRKAVVIKECVDMYVPN-PLKNN 426 (458)
T ss_pred cchhhHHHHHHHHhh--cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--cCchhhHHHHHHHHHHHHcCC-chhhh
Confidence 999999999999999 67765 6777778888889999999999999887 4564 33334444466655 56788
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHH
Q 003829 763 ITFVNNLSKLDPHVTKELECKLS 785 (793)
Q Consensus 763 ~~~~~~~~~~~~~~~~~~~~~l~ 785 (793)
+.+|-+-.+. +...+...+++
T Consensus 427 ~~~~~~~~~~--~~~~~~~~~~~ 447 (458)
T PRK11906 427 IKLYYKETES--ESHRVIIDNIL 447 (458)
T ss_pred HHHHhhcccc--ccchhhHHHHH
Confidence 8888664443 33334444443
No 225
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.73 E-value=0.0066 Score=46.27 Aligned_cols=63 Identities=27% Similarity=0.320 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCC-CC-HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003829 674 ISYNTVIFAYCRNGRMKEASRIFSEMRDS----GLV-PD-VITYNTFVASYAADSLFVEALDVVRYMIK 736 (793)
Q Consensus 674 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~-p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 736 (793)
.+++.+..+|...|++++|+++|+++++. |-. |+ ..++..++.+|...|++++|++++++.++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45667777777777777777777777642 111 12 25667777777777777777777777653
No 226
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.72 E-value=0.79 Score=46.08 Aligned_cols=82 Identities=13% Similarity=0.140 Sum_probs=53.0
Q ss_pred chHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003829 171 LRGSVIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVIL 250 (793)
Q Consensus 171 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll 250 (793)
-+...|..++..+...+..++.+++++++... ++.-..+|..-+.+-....++.....+|.+.+... .++..|...+
T Consensus 40 tnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~--l~ldLW~lYl 116 (660)
T COG5107 40 TNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS--LNLDLWMLYL 116 (660)
T ss_pred hhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh--ccHhHHHHHH
Confidence 35566777777777777777777777777653 33345567666666666677777777777766553 3455666655
Q ss_pred HHHHh
Q 003829 251 NVYGK 255 (793)
Q Consensus 251 ~~~~~ 255 (793)
....+
T Consensus 117 ~YIRr 121 (660)
T COG5107 117 EYIRR 121 (660)
T ss_pred HHHHh
Confidence 55444
No 227
>PRK11906 transcriptional regulator; Provisional
Probab=96.71 E-value=0.19 Score=51.24 Aligned_cols=132 Identities=11% Similarity=0.084 Sum_probs=96.1
Q ss_pred CCCCC-HHHHHHHHHHHHh---------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 003829 598 GFSPD-IPTLNAMISIYGR---------RQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAK 667 (793)
Q Consensus 598 ~~~~~-~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 667 (793)
.+.|+ ...|..+..++.. .....+|.+.-++..+.+ +.|......+..+....++++.|...|++....
T Consensus 289 ~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L 367 (458)
T PRK11906 289 DIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIH 367 (458)
T ss_pred cCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhc
Confidence 34554 4556655554432 234567778888888877 678888888888888888899999999999985
Q ss_pred CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003829 668 GIKPD-IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDV---ITYNTFVASYAADSLFVEALDVVRYMI 735 (793)
Q Consensus 668 ~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~ 735 (793)
.|| ..+|......+.-.|+.++|.+.+++.++ ..|.. .+....+..|+..+ .++|+.+|-+-.
T Consensus 368 --~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr--LsP~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 434 (458)
T PRK11906 368 --STDIASLYYYRALVHFHNEKIEEARICIDKSLQ--LEPRRRKAVVIKECVDMYVPNP-LKNNIKLYYKET 434 (458)
T ss_pred --CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--cCchhhHHHHHHHHHHHHcCCc-hhhhHHHHhhcc
Confidence 555 66787888888889999999999999888 55533 34445555777655 678888877644
No 228
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.67 E-value=0.81 Score=45.64 Aligned_cols=109 Identities=14% Similarity=0.139 Sum_probs=73.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 003829 422 FNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSR 501 (793)
Q Consensus 422 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 501 (793)
.+.-+.-+...|+...|.++-.+.. .|+..-|...+.+++..+++++-.++-.. .-.+..|..++..|.+
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~ 249 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLK 249 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHH
Confidence 3444555566777777777766653 56777888888888888888776665332 1134667778888888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 003829 502 CGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEM 550 (793)
Q Consensus 502 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 550 (793)
.|...+|..+...+. +..-+..|.++|++.+|.+.-.+.
T Consensus 250 ~~~~~eA~~yI~k~~----------~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 250 YGNKKEASKYIPKIP----------DEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred CCCHHHHHHHHHhCC----------hHHHHHHHHHCCCHHHHHHHHHHc
Confidence 888888877776621 134566677888888887765443
No 229
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.65 E-value=0.041 Score=54.48 Aligned_cols=60 Identities=13% Similarity=0.077 Sum_probs=31.8
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003829 641 YNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRD 701 (793)
Q Consensus 641 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 701 (793)
++.+..+|.+.+++.+|+..-++.+..+ +.|.....--..+|...|+++.|+..|+++++
T Consensus 260 ~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k 319 (397)
T KOG0543|consen 260 HLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALK 319 (397)
T ss_pred hhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 3444445555555555555555555542 33444444445555555555555555555555
No 230
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.62 E-value=0.014 Score=43.72 Aligned_cols=53 Identities=17% Similarity=0.196 Sum_probs=27.1
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003829 682 AYCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSLFVEALDVVRYMIK 736 (793)
Q Consensus 682 ~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 736 (793)
.|...+++++|.++++++++ ..| +...+...+.++...|++++|.+.+++.++
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALE--LDPDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHH--hCcccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34455555555555555555 222 234444555555555555555555555554
No 231
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.59 E-value=0.2 Score=45.87 Aligned_cols=86 Identities=20% Similarity=0.062 Sum_probs=43.1
Q ss_pred cHHHHHHHhccCCChHHHHHHHHHHHhccCCCCCccchHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHH
Q 003829 135 DLLGIVKGLGFHKKTDLALDVFEWFRSCCSKDGNLVLRGSVIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSL 214 (793)
Q Consensus 135 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 214 (793)
.+.....++...++++.|-..+....+.... +...|+ ..+.++.|.-+.+++.+..- -+..|+..
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~yEn------nrslfh-------AAKayEqaamLake~~klsE--vvdl~eKA 97 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKGYEN------NRSLFH-------AAKAYEQAAMLAKELSKLSE--VVDLYEKA 97 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHHh------cccHHH-------HHHHHHHHHHHHHHHHHhHH--HHHHHHHH
Confidence 3455555666667777777666665431111 111111 12233444444444433211 23345555
Q ss_pred HHHHHHcCCHHHHHHHHHHHH
Q 003829 215 ITTYASNGRYREAVMVFKKME 235 (793)
Q Consensus 215 ~~~~~~~g~~~~A~~~~~~~~ 235 (793)
...|..+|..+-|-..+++.-
T Consensus 98 s~lY~E~GspdtAAmaleKAa 118 (308)
T KOG1585|consen 98 SELYVECGSPDTAAMALEKAA 118 (308)
T ss_pred HHHHHHhCCcchHHHHHHHHH
Confidence 666777777777666666553
No 232
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.58 E-value=0.081 Score=46.29 Aligned_cols=67 Identities=27% Similarity=0.320 Sum_probs=32.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHH-----HcCCCCCHHH
Q 003829 677 NTVIFAYCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSLFVEALDVVRYMI-----KQGCKPNQNT 745 (793)
Q Consensus 677 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~p~~~~ 745 (793)
..++..+...|++++|..+++.++. ..| |...|..++.+|...|+..+|++.|+++. +.|+.|+..+
T Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~l~--~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 66 ERLAEALLEAGDYEEALRLLQRALA--LDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHH--HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 3444455555666666666666665 333 34555666666666666666666655553 2355555443
No 233
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.44 E-value=0.03 Score=56.79 Aligned_cols=65 Identities=11% Similarity=0.014 Sum_probs=40.9
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003829 635 TPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDI----ISYNTVIFAYCRNGRMKEASRIFSEMRD 701 (793)
Q Consensus 635 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 701 (793)
+.+...++.+..+|.+.|++++|+..|++.++. .|+. .+|..+..+|...|+.++|+..++++++
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445556666666666666666666666666664 3442 2466666666666666666666666666
No 234
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.42 E-value=0.046 Score=46.05 Aligned_cols=63 Identities=11% Similarity=0.067 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003829 675 SYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP--DVITYNTFVASYAADSLFVEALDVVRYMIKQ 737 (793)
Q Consensus 675 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 737 (793)
.+..-+....+.|++++|.+.|+.+...-... ...+...++.+|.+.|++++|+..+++.++.
T Consensus 12 ~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL 76 (142)
T PF13512_consen 12 ELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL 76 (142)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 33344455667888899988888888742111 2356678888888888888888888888874
No 235
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.42 E-value=0.13 Score=43.31 Aligned_cols=115 Identities=12% Similarity=0.135 Sum_probs=75.8
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHH
Q 003829 643 TLMYMYSRSENFARAEDVLREILAKGIKPD---IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDV--ITYNTFVAS 717 (793)
Q Consensus 643 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~ 717 (793)
.-.....+.|++++|.+.|+.+... .+.. ...-..++.+|.+.|++++|...+++.++ +.|+. .-|.....+
T Consensus 15 ~~a~~~l~~~~Y~~A~~~le~L~~r-yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFir--LhP~hp~vdYa~Y~~g 91 (142)
T PF13512_consen 15 QEAQEALQKGNYEEAIKQLEALDTR-YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIR--LHPTHPNVDYAYYMRG 91 (142)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhc-CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCCCccHHHHHHH
Confidence 3344566789999999999999986 2322 45677889999999999999999999999 55543 344444444
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCH
Q 003829 718 YAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTK 778 (793)
Q Consensus 718 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 778 (793)
++.-...+ ..+..+. +..-|. +....|...|+++++..|++..
T Consensus 92 L~~~~~~~---~~~~~~~--~~drD~-------------~~~~~A~~~f~~lv~~yP~S~y 134 (142)
T PF13512_consen 92 LSYYEQDE---GSLQSFF--RSDRDP-------------TPARQAFRDFEQLVRRYPNSEY 134 (142)
T ss_pred HHHHHHhh---hHHhhhc--ccccCc-------------HHHHHHHHHHHHHHHHCcCChh
Confidence 44332222 2233332 122232 2234778888888888887654
No 236
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.41 E-value=0.95 Score=43.37 Aligned_cols=225 Identities=14% Similarity=0.053 Sum_probs=135.8
Q ss_pred CChHHHHHHHHHHhcCCCC-CCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 003829 538 GMWEQSEKIFAEMKGGRCK-PNELTYSSLLHAYANGREIDQMLALSEEIYSERAFLELKKKGFSPDIPTLNAMISIYGRR 616 (793)
Q Consensus 538 g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 616 (793)
+....+...+......... .....+......+...+++..+...+...... .........+......+...
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~ 108 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALEL--------ELLPNLAEALLNLGLLLEAL 108 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhh--------hhccchHHHHHHHHHHHHHH
Confidence 3344444444444433111 12344555555566666666666655443210 12233444555666666666
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHH-HHHccCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHcCCHHHHH
Q 003829 617 QMVAKTNEILHFMNDSGFTPSLTTYNTLMY-MYSRSENFARAEDVLREILAKGI--KPDIISYNTVIFAYCRNGRMKEAS 693 (793)
Q Consensus 617 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~ 693 (793)
+.+..+.+.+.........+ ......... .+...|++++|...+++...... ......+......+...++.+++.
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 187 (291)
T COG0457 109 GKYEEALELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEAL 187 (291)
T ss_pred hhHHHHHHHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHH
Confidence 77777777777777643222 122222223 67778888888888888755211 012333444444466778888888
Q ss_pred HHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHh
Q 003829 694 RIFSEMRDSGLVPD--VITYNTFVASYAADSLFVEALDVVRYMIKQGCKPN-QNTYNSIVDGYCKLNQRYEAITFVNNLS 770 (793)
Q Consensus 694 ~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 770 (793)
..+.++.+. .++ ...+..+...+...+++++|...+....+. .|+ ...+..+...+...|+.+++...+.+..
T Consensus 188 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (291)
T COG0457 188 ELLEKALKL--NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKAL 263 (291)
T ss_pred HHHHHHHhh--CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHH
Confidence 888888873 333 566777778888888888888888888763 333 4455555656666677888888888888
Q ss_pred hCCCC
Q 003829 771 KLDPH 775 (793)
Q Consensus 771 ~~~~~ 775 (793)
+..|.
T Consensus 264 ~~~~~ 268 (291)
T COG0457 264 ELDPD 268 (291)
T ss_pred HhCcc
Confidence 88775
No 237
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.40 E-value=0.15 Score=54.17 Aligned_cols=165 Identities=17% Similarity=0.134 Sum_probs=113.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH------HHHHHHHHHH----ccCCHHHHHHHHHHHHHCCCCCCHH
Q 003829 605 TLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLT------TYNTLMYMYS----RSENFARAEDVLREILAKGIKPDII 674 (793)
Q Consensus 605 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------~~~~l~~~~~----~~g~~~~A~~~~~~~~~~~~~~~~~ 674 (793)
.+..++...+-.|+-+.+++.+.+..+.+---.+. .|...+..++ ...+.+.|.++++.+.+. -|+..
T Consensus 190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~ 267 (468)
T PF10300_consen 190 KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSA 267 (468)
T ss_pred HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcH
Confidence 35556666777889999999888876642111111 1333333332 255789999999999986 56665
Q ss_pred HHHH-HHHHHHHcCCHHHHHHHHHHHHHC--CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH-
Q 003829 675 SYNT-VIFAYCRNGRMKEASRIFSEMRDS--GL-VPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSI- 749 (793)
Q Consensus 675 ~~~~-l~~~~~~~g~~~~A~~~~~~~~~~--~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l- 749 (793)
.|.. -...+...|+.++|.+.|+++... .. ......+.-+++++.-.++|++|.+.+..+.+.+ .-...+|..+
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~ 346 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLA 346 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHH
Confidence 5544 346778889999999999987752 11 1134567788889999999999999999999753 3334444433
Q ss_pred HHHHHccCCH-------HHHHHHHHHHhhC
Q 003829 750 VDGYCKLNQR-------YEAITFVNNLSKL 772 (793)
Q Consensus 750 ~~~~~~~g~~-------~~A~~~~~~~~~~ 772 (793)
+-++...|+. ++|.++++++...
T Consensus 347 a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 347 AACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 3446677888 8899999887765
No 238
>PRK15331 chaperone protein SicA; Provisional
Probab=96.30 E-value=0.14 Score=44.32 Aligned_cols=89 Identities=10% Similarity=0.000 Sum_probs=57.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 003829 611 SIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMK 690 (793)
Q Consensus 611 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 690 (793)
--+...|++++|..+|.-+.-.+ +-+..-|..|..++...+++++|+..|......+ ..|...+-....+|...|+.+
T Consensus 45 y~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 45 YEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHH
Confidence 33456677777777777776654 3345556666666777777777777777666543 234445556667777777777
Q ss_pred HHHHHHHHHHH
Q 003829 691 EASRIFSEMRD 701 (793)
Q Consensus 691 ~A~~~~~~~~~ 701 (793)
.|+..|+..++
T Consensus 123 ~A~~~f~~a~~ 133 (165)
T PRK15331 123 KARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHh
Confidence 77777777766
No 239
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.29 E-value=0.5 Score=45.98 Aligned_cols=131 Identities=14% Similarity=0.035 Sum_probs=93.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC----CCCCCH--
Q 003829 605 TLNAMISIYGRRQMVAKTNEILHFMNDSGF-----TPSLTTYNTLMYMYSRSENFARAEDVLREILAK----GIKPDI-- 673 (793)
Q Consensus 605 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~-- 673 (793)
....+..++...+.++++++.|+...+.-- .....++-.|...|.+..|+++|.-+..+.... ++..-.
T Consensus 124 ~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~k 203 (518)
T KOG1941|consen 124 VSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLK 203 (518)
T ss_pred hhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHH
Confidence 445577777888899999999998875411 112346788999999999999999888776542 222111
Q ss_pred ---HHHHHHHHHHHHcCCHHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003829 674 ---ISYNTVIFAYCRNGRMKEASRIFSEMRD----SGLVPD-VITYNTFVASYAADSLFVEALDVVRYMI 735 (793)
Q Consensus 674 ---~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 735 (793)
.+...|.-++...|...+|.+..++..+ .|-.+- ......++..|...|+.+.|..-|+.+.
T Consensus 204 yr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 204 YRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 2333455678888999999999888765 343332 2445788889999999999998888865
No 240
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.27 E-value=1 Score=42.21 Aligned_cols=180 Identities=17% Similarity=0.058 Sum_probs=95.7
Q ss_pred HHHHHhcCChHHHHHHHHHHhhCCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 003829 180 ISMLGKEGKVSVAASLLHGLHKDGFD--IDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMG 257 (793)
Q Consensus 180 ~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g 257 (793)
+......|++++|.+.|+.+..+.+. ....+.-.++.++.+.++++.|+..+++....-+......|-.-|.+++..-
T Consensus 41 g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~ 120 (254)
T COG4105 41 GLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFF 120 (254)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhc
Confidence 33344788888888888888765332 2345666677777888888888888888877643333334444444443221
Q ss_pred ------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHhcCC
Q 003829 258 ------MPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTY--NALLDVYGKCRR 329 (793)
Q Consensus 258 ------~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~--~~li~~~~~~g~ 329 (793)
++...+...+..+.. ++.-|=...-...|..-+..+... ... -.+.+.|.+.|.
T Consensus 121 ~i~~~~rDq~~~~~A~~~f~~------------~i~ryPnS~Ya~dA~~~i~~~~d~------LA~~Em~IaryY~kr~~ 182 (254)
T COG4105 121 QIDDVTRDQSAARAAFAAFKE------------LVQRYPNSRYAPDAKARIVKLNDA------LAGHEMAIARYYLKRGA 182 (254)
T ss_pred cCCccccCHHHHHHHHHHHHH------------HHHHCCCCcchhhHHHHHHHHHHH------HHHHHHHHHHHHHHhcC
Confidence 122333333322221 111111111112222222222111 111 134566777778
Q ss_pred hHHHHHHHHHHHHcCCCCCh---hHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 003829 330 PKEAMQVLREMKINGCLPSI---VTYNSLISAYARDGLLEEAMELKTQMVEI 378 (793)
Q Consensus 330 ~~~A~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 378 (793)
+..|..-+++|++. .+-.. ..+-.+..+|...|-.++|.+.-.-+..+
T Consensus 183 ~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 183 YVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred hHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 88887777777765 22222 24455666777777777777665555443
No 241
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.26 E-value=0.22 Score=40.53 Aligned_cols=91 Identities=20% Similarity=0.043 Sum_probs=63.3
Q ss_pred HhccCCChHHHHHHHHHHHhccCCCCCccchHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHH---HHHHHHHHH
Q 003829 142 GLGFHKKTDLALDVFEWFRSCCSKDGNLVLRGSVIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVY---AYTSLITTY 218 (793)
Q Consensus 142 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---~~~~l~~~~ 218 (793)
++...|+.+.|++.|...... .+...++|+.-..++.-.|+.++|++-+++.++..-+-+.. +|..-...|
T Consensus 52 alaE~g~Ld~AlE~F~qal~l------~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~ly 125 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL------APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLY 125 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh------cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence 455678888888888887662 23467788888888888888888888888776542222322 344444556
Q ss_pred HHcCCHHHHHHHHHHHHHcC
Q 003829 219 ASNGRYREAVMVFKKMEEEG 238 (793)
Q Consensus 219 ~~~g~~~~A~~~~~~~~~~~ 238 (793)
...|+.+.|..-|+..-+.|
T Consensus 126 Rl~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 126 RLLGNDDAARADFEAAAQLG 145 (175)
T ss_pred HHhCchHHHHHhHHHHHHhC
Confidence 67788888888888877766
No 242
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.19 E-value=0.021 Score=57.83 Aligned_cols=98 Identities=15% Similarity=0.148 Sum_probs=73.8
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH
Q 003829 671 PDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDV----ITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTY 746 (793)
Q Consensus 671 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 746 (793)
.+...|+.+..+|...|++++|...|++.++ +.|+. .+|..++.+|...|++++|+..++++++.+ .+ .|
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALe--L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels-n~---~f 146 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALE--LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY-NL---KF 146 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-ch---hH
Confidence 3578899999999999999999999999999 66764 358999999999999999999999999852 22 22
Q ss_pred HHHHH--HHHccCCHHHHHHHHHHHhhCCC
Q 003829 747 NSIVD--GYCKLNQRYEAITFVNNLSKLDP 774 (793)
Q Consensus 747 ~~l~~--~~~~~g~~~~A~~~~~~~~~~~~ 774 (793)
..+.. .+....+.++..++++.+.+-+-
T Consensus 147 ~~i~~DpdL~plR~~pef~eLlee~rk~G~ 176 (453)
T PLN03098 147 STILNDPDLAPFRASPEFKELQEEARKGGE 176 (453)
T ss_pred HHHHhCcchhhhcccHHHHHHHHHHHHhCC
Confidence 22211 12233344577777777777753
No 243
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.14 E-value=0.097 Score=42.53 Aligned_cols=52 Identities=21% Similarity=0.260 Sum_probs=25.4
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003829 683 YCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSLFVEALDVVRYMIK 736 (793)
Q Consensus 683 ~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 736 (793)
+...|+.+.|++.|.+.+. +-| ....||.-..++.-+|+.++|++-++++++
T Consensus 53 laE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~Ale 105 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALE 105 (175)
T ss_pred HHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence 3444555555555555554 222 334455555555555555555555555544
No 244
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.14 E-value=0.011 Score=38.86 Aligned_cols=36 Identities=22% Similarity=0.337 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHH
Q 003829 744 NTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKE 779 (793)
Q Consensus 744 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 779 (793)
.++..++..|.+.|++++|+++++++++.+|++...
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a 37 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEA 37 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHH
Confidence 345667777777777777777777777777775543
No 245
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=96.06 E-value=1.3 Score=45.69 Aligned_cols=107 Identities=14% Similarity=0.109 Sum_probs=67.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC------
Q 003829 672 DIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP---DVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPN------ 742 (793)
Q Consensus 672 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~------ 742 (793)
...+|..++..+.+.|+++.|...+.++...+... .+.+....+..+-..|+..+|+..++..++..+..+
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~ 224 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISN 224 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccH
Confidence 34567777788888888888888888877643111 233444555566677777888877777665111100
Q ss_pred ---------------------------HHHHHHHHHHHHcc------CCHHHHHHHHHHHhhCCCCCCH
Q 003829 743 ---------------------------QNTYNSIVDGYCKL------NQRYEAITFVNNLSKLDPHVTK 778 (793)
Q Consensus 743 ---------------------------~~~~~~l~~~~~~~------g~~~~A~~~~~~~~~~~~~~~~ 778 (793)
...+..++...... ++.+++...|+++.+..|+...
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k 293 (352)
T PF02259_consen 225 AELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEK 293 (352)
T ss_pred HHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHH
Confidence 12334444444455 7788888999999888876544
No 246
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.06 E-value=0.44 Score=42.30 Aligned_cols=122 Identities=7% Similarity=-0.050 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHCCCCCCHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCChHHHHHHH
Q 003829 656 RAEDVLREILAKGIKPDIISY--NTVIFAYCRNGRMKEASRIFSEMRDSGLVPDV--ITYNTFVASYAADSLFVEALDVV 731 (793)
Q Consensus 656 ~A~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~ 731 (793)
+.....+++....-.-...++ ..+...+...|++++|...++..+.....-+. .+--.|.+.....|.+++|+..+
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L 149 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTL 149 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 445555566554211111122 23446788899999999999988863222111 33356777888999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHH
Q 003829 732 RYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKE 779 (793)
Q Consensus 732 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 779 (793)
....+.+. .......-++.+...|+.++|+..|+++++.++++...
T Consensus 150 ~t~~~~~w--~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~~~ 195 (207)
T COG2976 150 DTIKEESW--AAIVAELRGDILLAKGDKQEARAAYEKALESDASPAAR 195 (207)
T ss_pred hccccccH--HHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChHHH
Confidence 98765433 23445567888999999999999999999998665554
No 247
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.86 E-value=3.4 Score=44.72 Aligned_cols=108 Identities=17% Similarity=0.119 Sum_probs=79.3
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003829 640 TYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYA 719 (793)
Q Consensus 640 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 719 (793)
+.+.-+.-+...|+..+|.++-.+.. -||...|..-+.+++..++|++-+++-+... .+.-|.-+..+|.
T Consensus 686 Sl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~ 755 (829)
T KOG2280|consen 686 SLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACL 755 (829)
T ss_pred cHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHH
Confidence 34455556677889999988877765 4688888888899999999988666554432 2456788888999
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 003829 720 ADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFV 766 (793)
Q Consensus 720 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 766 (793)
+.|+.+||.+++.+.-. .. -.+.+|.+.|++.+|.+..
T Consensus 756 ~~~n~~EA~KYiprv~~-----l~----ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 756 KQGNKDEAKKYIPRVGG-----LQ----EKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred hcccHHHHhhhhhccCC-----hH----HHHHHHHHhccHHHHHHHH
Confidence 99999999999887532 12 4566777888888876654
No 248
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=95.86 E-value=3 Score=44.05 Aligned_cols=135 Identities=12% Similarity=0.055 Sum_probs=73.4
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003829 172 RGSVIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILN 251 (793)
Q Consensus 172 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~ 251 (793)
+...+..++.---.....+.+...+..++.. ++.-.--|-.....-.+.|..+.+.++|++-... ++.++..|...+.
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k-yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~~ 121 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSK-YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYLA 121 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhh-CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHHH
Confidence 4455555555444444455666666666644 2222234555555556677777888888777653 4556666766666
Q ss_pred HHHhcCCCHHHHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 003829 252 VYGKMGMPWNKIMALVEGMKSA-GVKP-DSYTFNTLISCCRRGSLHEEAAGVFEEMKLA 308 (793)
Q Consensus 252 ~~~~~g~~~~~a~~~~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 308 (793)
.++....+.+.....|+..+.. |..- ....|...|..-...++......++++.++.
T Consensus 122 f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 122 FLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred HHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 6555433556666666665542 2211 2223444444444555555555555555543
No 249
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.85 E-value=1.6 Score=40.90 Aligned_cols=170 Identities=12% Similarity=0.090 Sum_probs=115.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003829 607 NAMISIYGRRQMVAKTNEILHFMNDSG--FTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYC 684 (793)
Q Consensus 607 ~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 684 (793)
..-+..-.+.|++++|.+.|+.+.... -+-...+.-.++.++.+.++++.|+..+++.++.-..-...-|...+.+++
T Consensus 38 Y~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs 117 (254)
T COG4105 38 YNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLS 117 (254)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHH
Confidence 333444567899999999999998752 122345566778889999999999999999998632222334545554443
Q ss_pred Hc-------CC---HHHHHHHHHHHHHC----CCCCCHHH---H---------HHHHHHHHhcCChHHHHHHHHHHHHcC
Q 003829 685 RN-------GR---MKEASRIFSEMRDS----GLVPDVIT---Y---------NTFVASYAADSLFVEALDVVRYMIKQG 738 (793)
Q Consensus 685 ~~-------g~---~~~A~~~~~~~~~~----~~~p~~~~---~---------~~l~~~~~~~g~~~~A~~~~~~~~~~~ 738 (793)
.- .+ ..+|..-|+++++. ...||... + ...++-|.+.|.+-.|+.-+++|++.
T Consensus 118 ~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~- 196 (254)
T COG4105 118 YFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLEN- 196 (254)
T ss_pred HhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhc-
Confidence 21 23 33455555555552 22333311 1 34566788999999999999999985
Q ss_pred CCCC---HHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCC
Q 003829 739 CKPN---QNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVT 777 (793)
Q Consensus 739 ~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 777 (793)
.+-. ...+-.+..+|.+.|-.++|.+.-+-+....|+..
T Consensus 197 y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~ 238 (254)
T COG4105 197 YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDSQ 238 (254)
T ss_pred cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCc
Confidence 3332 35566778899999999999888777777777654
No 250
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=95.83 E-value=0.017 Score=35.26 Aligned_cols=33 Identities=24% Similarity=0.431 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCC
Q 003829 744 NTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHV 776 (793)
Q Consensus 744 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 776 (793)
..|..++.++.+.|++++|++.++++++.+|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 457778888888888888888888888888864
No 251
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.81 E-value=0.1 Score=45.72 Aligned_cols=59 Identities=27% Similarity=0.285 Sum_probs=30.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003829 175 VIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKM 234 (793)
Q Consensus 175 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 234 (793)
+...++..+...|+++.|..+.+.+....+. +...|..++.+|...|+..+|.++|+++
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 3444444555555555555555555554332 5555555555555555555555555554
No 252
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.78 E-value=0.11 Score=45.84 Aligned_cols=94 Identities=20% Similarity=0.291 Sum_probs=63.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHH
Q 003829 681 FAYCRNGRMKEASRIFSEMRDSGLVP------DVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPN-QNTYNSIVDGY 753 (793)
Q Consensus 681 ~~~~~~g~~~~A~~~~~~~~~~~~~p------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~ 753 (793)
+-+.+.|++++|..-|.++++. .| ....|..-+.++.+.+.++.|++-..+.++.+ |. ......-+.+|
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~--cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~--pty~kAl~RRAeay 178 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALES--CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN--PTYEKALERRAEAY 178 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHh--CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC--chhHHHHHHHHHHH
Confidence 3456677778887777777773 22 12456666677777788888888888777743 32 33444445667
Q ss_pred HccCCHHHHHHHHHHHhhCCCCCCH
Q 003829 754 CKLNQRYEAITFVNNLSKLDPHVTK 778 (793)
Q Consensus 754 ~~~g~~~~A~~~~~~~~~~~~~~~~ 778 (793)
.+..++++|++=|+++++.+|....
T Consensus 179 ek~ek~eealeDyKki~E~dPs~~e 203 (271)
T KOG4234|consen 179 EKMEKYEEALEDYKKILESDPSRRE 203 (271)
T ss_pred HhhhhHHHHHHHHHHHHHhCcchHH
Confidence 7777888888888888888776553
No 253
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.72 E-value=1.5 Score=42.02 Aligned_cols=151 Identities=7% Similarity=0.015 Sum_probs=95.0
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 003829 612 IYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKE 691 (793)
Q Consensus 612 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 691 (793)
.....|++.+|...|+...+.. +.+....-.++.+|...|+.+.|..++..+....-.........-+..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 4567788999999888888764 445566677888899999999999999887754211111122223344444444444
Q ss_pred HHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHccCCHHHHHHHH
Q 003829 692 ASRIFSEMRDSGLVP-DVITYNTFVASYAADSLFVEALDVVRYMIKQGCK-PNQNTYNSIVDGYCKLNQRYEAITFV 766 (793)
Q Consensus 692 A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~ 766 (793)
...+-.+.-. .| |...-..+...|...|+.++|.+.+-.+++++.. -|...-..++..+.--|..+.+...+
T Consensus 222 ~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~ 295 (304)
T COG3118 222 IQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAY 295 (304)
T ss_pred HHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHH
Confidence 4444444433 34 5666778888888889999998888887754321 13444556666666555444444333
No 254
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.71 E-value=0.26 Score=47.30 Aligned_cols=152 Identities=9% Similarity=0.000 Sum_probs=110.9
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHcCC
Q 003829 613 YGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPD----IISYNTVIFAYCRNGR 688 (793)
Q Consensus 613 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~ 688 (793)
+...|++.+|...++++.+. .|.|...+..--++|.-.|+.+.-...+++++-. ..+| ......+..++...|-
T Consensus 113 ~~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred hhccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhcc
Confidence 34568888888888888875 5778888888888888899988888888888854 2334 3344455667788899
Q ss_pred HHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC----CHHHHHHHHHHHHccCCHHHHH
Q 003829 689 MKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP----NQNTYNSIVDGYCKLNQRYEAI 763 (793)
Q Consensus 689 ~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~ 763 (793)
+++|.+.-++.++ +.+ |.-.-.++...+.-.|++.++.++..+-... ..- -...|-+.+-.+...+.++.|.
T Consensus 191 y~dAEk~A~ralq--iN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~-Wr~s~mlasHNyWH~Al~~iE~aeye~al 267 (491)
T KOG2610|consen 191 YDDAEKQADRALQ--INRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDD-WRQSWMLASHNYWHTALFHIEGAEYEKAL 267 (491)
T ss_pred chhHHHHHHhhcc--CCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccc-hhhhhHHHhhhhHHHHHhhhcccchhHHH
Confidence 9999999999888 444 5566678888888899999999887764321 111 1233445555666778999999
Q ss_pred HHHHHH
Q 003829 764 TFVNNL 769 (793)
Q Consensus 764 ~~~~~~ 769 (793)
++|.+=
T Consensus 268 eIyD~e 273 (491)
T KOG2610|consen 268 EIYDRE 273 (491)
T ss_pred HHHHHH
Confidence 988653
No 255
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.71 E-value=0.51 Score=50.28 Aligned_cols=117 Identities=13% Similarity=0.064 Sum_probs=84.5
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHH-HHHHHHHccCCHHHHHHHHHHHHHCC--C-CCCHHHHHHHHHHHHHcCCHHH
Q 003829 616 RQMVAKTNEILHFMNDSGFTPSLTTYN-TLMYMYSRSENFARAEDVLREILAKG--I-KPDIISYNTVIFAYCRNGRMKE 691 (793)
Q Consensus 616 ~g~~~~A~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~--~-~~~~~~~~~l~~~~~~~g~~~~ 691 (793)
....+.|.++++.+.+. -|+...|. .-...+...|++++|++.|++..... . ......+.-+++++.-.++|++
T Consensus 246 ~~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~ 323 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEE 323 (468)
T ss_pred CCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHH
Confidence 45788999999999986 45555554 34566788999999999999876421 1 1224556677888999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHH-HHHHHHHhcCCh-------HHHHHHHHHHH
Q 003829 692 ASRIFSEMRDSGLVPDVITYN-TFVASYAADSLF-------VEALDVVRYMI 735 (793)
Q Consensus 692 A~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~g~~-------~~A~~~~~~~~ 735 (793)
|.+.|.++.+.+-. ...+|. ..+.++...|+. ++|.+++.+..
T Consensus 324 A~~~f~~L~~~s~W-Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 324 AAEYFLRLLKESKW-SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHHHHhcccc-HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 99999999985333 234443 333345577888 88888888765
No 256
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.68 E-value=4 Score=44.22 Aligned_cols=342 Identities=13% Similarity=0.079 Sum_probs=175.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 003829 355 LISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKD--ESAMKVFEEMRSAGCKPNICTFNALIKMHGNR 432 (793)
Q Consensus 355 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 432 (793)
+|.-+...+.+..|+++-+.+...-.. +...|.....-+.+..+. +++.+.+++-..... .+...|..+.......
T Consensus 443 vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~-~~~iSy~~iA~~Ay~~ 520 (829)
T KOG2280|consen 443 VIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL-TPGISYAAIARRAYQE 520 (829)
T ss_pred hhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhcccC-CCceeHHHHHHHHHhc
Confidence 455566667777777776655432111 134555555555544221 222222222222111 2344566666666677
Q ss_pred CCHHHHHHHHHHHHhCCCC----CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHH
Q 003829 433 GNFVEMMKVFDEINKCNCK----PDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQA 508 (793)
Q Consensus 433 g~~~~A~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a 508 (793)
|+.+.|.++++.=...+.. .+..-+...+.-..+.|+.+-...++..+...- +...+...+ .+...|
T Consensus 521 GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~---~~s~l~~~l------~~~p~a 591 (829)
T KOG2280|consen 521 GRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL---NRSSLFMTL------RNQPLA 591 (829)
T ss_pred CcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH---HHHHHHHHH------Hhchhh
Confidence 8888777776542111100 011223344455556666666666665555431 122222221 234455
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH--HHhcC-CCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHH
Q 003829 509 MSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFA--EMKGG-RCKPNELTYSSLLHAYANGREIDQMLALSEEI 585 (793)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~--~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 585 (793)
..+|.+..+.. +..+ +-+.|. .++-.++...|. ..... .+.+-..........+.+.....-..+..++.
T Consensus 592 ~~lY~~~~r~~---~~~~---l~d~y~-q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~ 664 (829)
T KOG2280|consen 592 LSLYRQFMRHQ---DRAT---LYDFYN-QDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQ 664 (829)
T ss_pred hHHHHHHHHhh---chhh---hhhhhh-cccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHH
Confidence 56666555431 1111 111222 222222222221 10000 01222233344455555554433222222222
Q ss_pred Hh-HHHHHHHH-HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 003829 586 YS-ERAFLELK-KKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLRE 663 (793)
Q Consensus 586 ~~-~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 663 (793)
.. ...+..+. +.+..-..-+.+--+.-+...|+..+|.++-.+.+ -||-..|-.-+.+++..+++++-+++-+.
T Consensus 665 ~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAks 740 (829)
T KOG2280|consen 665 MKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKS 740 (829)
T ss_pred HHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhc
Confidence 11 01111111 12222223344445556667799999988877664 57888888888899999999887666554
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 003829 664 ILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRY 733 (793)
Q Consensus 664 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 733 (793)
.. .+.-|.-...+|.+.|+.++|.+++-+.-. +.-...+|.+.|++.+|.+..-+
T Consensus 741 kk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~---------l~ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 741 KK------SPIGYLPFVEACLKQGNKDEAKKYIPRVGG---------LQEKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred cC------CCCCchhHHHHHHhcccHHHHhhhhhccCC---------hHHHHHHHHHhccHHHHHHHHHH
Confidence 43 244566778899999999999999876543 11567789999999999877554
No 257
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.65 E-value=0.18 Score=47.49 Aligned_cols=88 Identities=18% Similarity=0.216 Sum_probs=38.7
Q ss_pred hcCChHHHHHHHHHHhhCCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-C-CHHHHHHHHHHHHhcCCCH
Q 003829 185 KEGKVSVAASLLHGLHKDGFD--IDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCK-P-TLITYNVILNVYGKMGMPW 260 (793)
Q Consensus 185 ~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p-~~~~~~~ll~~~~~~g~~~ 260 (793)
+.|++..|...|...++..+. ....++-.|+.++...|++++|..+|..+.+.-+. | -...+--|.....+.| +.
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~-~~ 231 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLG-NT 231 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhc-CH
Confidence 344455555555554443221 11223334555555555555555555555443111 1 1233444444444444 45
Q ss_pred HHHHHHHHHHHhC
Q 003829 261 NKIMALVEGMKSA 273 (793)
Q Consensus 261 ~~a~~~~~~~~~~ 273 (793)
++|...|+++.+.
T Consensus 232 d~A~atl~qv~k~ 244 (262)
T COG1729 232 DEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555443
No 258
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=95.50 E-value=0.02 Score=35.01 Aligned_cols=32 Identities=25% Similarity=0.507 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHhhCCCC
Q 003829 744 NTYNSIVDGYCKLNQRYEAITFVNNLSKLDPH 775 (793)
Q Consensus 744 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 775 (793)
.+|..++.+|...|++++|+..++++++.+|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 46777788888888888888888888888775
No 259
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.45 E-value=1.3 Score=38.50 Aligned_cols=126 Identities=9% Similarity=0.066 Sum_probs=82.6
Q ss_pred HHccCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCC
Q 003829 648 YSRSENFARAEDVLREILAKGIKPDI-ISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVI---TYNTFVASYAADSL 723 (793)
Q Consensus 648 ~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~---~~~~l~~~~~~~g~ 723 (793)
+.+.+..++|+.-|..+.+.|...-+ ....-+.......|+...|...|+++-.-...|... .-..-...+...|.
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 34566778888888888877644221 122233445677788888888888887744444331 22233345668888
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCC
Q 003829 724 FVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLD 773 (793)
Q Consensus 724 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 773 (793)
+++.....+-+...+-+-....-..|+-+-++.|++.+|..+|..+..-.
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da 197 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDA 197 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccc
Confidence 88888777776544322224455677878888999999999998887743
No 260
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.44 E-value=2.1 Score=39.47 Aligned_cols=204 Identities=12% Similarity=0.107 Sum_probs=102.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 003829 352 YNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGN 431 (793)
Q Consensus 352 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 431 (793)
|..-..+|-...++++|...+.+..+. .+.|...|. - ...++.|.-+.+++.+. ..-...|+-...+|..
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-A------AKayEqaamLake~~kl--sEvvdl~eKAs~lY~E 103 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-A------AKAYEQAAMLAKELSKL--SEVVDLYEKASELYVE 103 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-H------HHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHH
Confidence 444455666667777777766665532 122222111 1 22334455555555443 1123345556666777
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHc---CCC--CCHHHHHHHHHHHhccCCHH
Q 003829 432 RGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRA---GFI--PERDTFNTLISAYSRCGSFD 506 (793)
Q Consensus 432 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---~~~--~~~~~~~~l~~~~~~~g~~~ 506 (793)
+|..+.|-..+++.-+. ..+.++++|+++|.+...- +-. --...+..+.+.+.+..+++
T Consensus 104 ~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~ 167 (308)
T KOG1585|consen 104 CGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFT 167 (308)
T ss_pred hCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhh
Confidence 77776666666554321 2233444444444443321 000 01112334445566666666
Q ss_pred HHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHhcC---CCCCCHhhHHHHHHHHHcCCCHHHH
Q 003829 507 QAMSIYKRMLEA----GVTPD-LSTYNAVLAALARGGMWEQSEKIFAEMKGG---RCKPNELTYSSLLHAYANGREIDQM 578 (793)
Q Consensus 507 ~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~~~~~~a 578 (793)
+|-..+.+-... .-.++ -..|...|-.+....++..|...+++--.. ...-+..+...|+.+| ..|+.+++
T Consensus 168 Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~ 246 (308)
T KOG1585|consen 168 EAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEI 246 (308)
T ss_pred HHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHH
Confidence 665555433211 11111 123445555666677888999988874332 1223566777788776 45677666
Q ss_pred HHHH
Q 003829 579 LALS 582 (793)
Q Consensus 579 ~~~~ 582 (793)
..+.
T Consensus 247 ~kvl 250 (308)
T KOG1585|consen 247 KKVL 250 (308)
T ss_pred HHHH
Confidence 5543
No 261
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.34 E-value=1.3 Score=38.31 Aligned_cols=124 Identities=9% Similarity=0.177 Sum_probs=71.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 003829 608 AMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNG 687 (793)
Q Consensus 608 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 687 (793)
.++..+...+.......+++.+...+ ..+....+.++..|++.+ ..+..+.++. ..+.......+..|.+.+
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAK 83 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcC
Confidence 45555666677777777888777765 356667777777777653 3444444442 112333445666677777
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003829 688 RMKEASRIFSEMRDSGLVPDVITYNTFVASYAAD-SLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYC 754 (793)
Q Consensus 688 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 754 (793)
.++++..++.++-. +...+..+... ++++.|++++.+- .+...|..++..+.
T Consensus 84 l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l 136 (140)
T smart00299 84 LYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALL 136 (140)
T ss_pred cHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHH
Confidence 77777777766532 11222223333 6677777766651 24556666665544
No 262
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.34 E-value=1.4 Score=45.32 Aligned_cols=150 Identities=13% Similarity=0.061 Sum_probs=75.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC
Q 003829 214 LITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGS 293 (793)
Q Consensus 214 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 293 (793)
++.-..+..+.+.-++.-.+.++. .||..+..+++..-.. . ...++++++++..+.|-. .+.+..
T Consensus 174 IMq~AWRERnp~aRIkaA~eALei--~pdCAdAYILLAEEeA-~-Ti~Eae~l~rqAvkAgE~-----------~lg~s~ 238 (539)
T PF04184_consen 174 IMQKAWRERNPQARIKAAKEALEI--NPDCADAYILLAEEEA-S-TIVEAEELLRQAVKAGEA-----------SLGKSQ 238 (539)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHh--hhhhhHHHhhcccccc-c-CHHHHHHHHHHHHHHHHH-----------hhchhh
Confidence 333344555566656666666553 4554433333322111 1 356777777776654311 011100
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHH
Q 003829 294 LHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLP-SIVTYNSLISAYARDGLLEEAMELK 372 (793)
Q Consensus 294 ~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~ 372 (793)
..+..-..++.+......+-..+-..|..+.-+.|+.++|.+.+++|.+..... +......|+.++...+.+.++..++
T Consensus 239 ~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL 318 (539)
T PF04184_consen 239 FLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALL 318 (539)
T ss_pred hhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHH
Confidence 000001112222222222223333456666667788888888888876542221 2235566777888888888888877
Q ss_pred HHHHHc
Q 003829 373 TQMVEI 378 (793)
Q Consensus 373 ~~m~~~ 378 (793)
.+..+.
T Consensus 319 ~kYdDi 324 (539)
T PF04184_consen 319 AKYDDI 324 (539)
T ss_pred HHhccc
Confidence 776543
No 263
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=95.33 E-value=6.2 Score=44.12 Aligned_cols=183 Identities=13% Similarity=0.138 Sum_probs=99.7
Q ss_pred HHHHHHHHHH-hCCCCCC--HHHHHHHHHHHH-cCCCHHHHHHHHHHHHHCCCCCCHH-----HHHHHHHHHHhcCChHH
Q 003829 262 KIMALVEGMK-SAGVKPD--SYTFNTLISCCR-RGSLHEEAAGVFEEMKLAGFSPDKV-----TYNALLDVYGKCRRPKE 332 (793)
Q Consensus 262 ~a~~~~~~~~-~~~~~p~--~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~g~~~~~~-----~~~~li~~~~~~g~~~~ 332 (793)
.|+..++.+. +..+.|. ..++..+...+. ...++++|+.++++.....-.++.. +...++..+.+.+...
T Consensus 39 ~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~- 117 (608)
T PF10345_consen 39 TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA- 117 (608)
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-
Confidence 3444455555 3333333 334555555544 6778888888888765442222221 2335567777766666
Q ss_pred HHHHHHHHHHcC----CCCChhHHHHH-HHHHHhcCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHH--HcCCHHH
Q 003829 333 AMQVLREMKING----CLPSIVTYNSL-ISAYARDGLLEEAMELKTQMVEIG---ITPDVFTYTTLLSGFE--KAGKDES 402 (793)
Q Consensus 333 A~~~~~~~~~~~----~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g---~~~~~~~~~~li~~~~--~~g~~~~ 402 (793)
|...+++.++.- ..+-...|..+ +..+...++...|.+.++.+...- ..+-...+..++.+.. ..+..++
T Consensus 118 a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d 197 (608)
T PF10345_consen 118 ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDD 197 (608)
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchh
Confidence 888888765541 11112233333 333333478888888888876542 2333444455555544 3455666
Q ss_pred HHHHHHHHHHCCC---------CCCHHHHHHHHHHHH--hcCCHHHHHHHHHHH
Q 003829 403 AMKVFEEMRSAGC---------KPNICTFNALIKMHG--NRGNFVEMMKVFDEI 445 (793)
Q Consensus 403 a~~~~~~~~~~~~---------~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~ 445 (793)
+.+.++.+..... .|-..+|..+++.++ ..|+++.+...++++
T Consensus 198 ~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 198 VLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6666666533211 234556666666554 566766666666554
No 264
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=95.19 E-value=6.7 Score=43.70 Aligned_cols=232 Identities=10% Similarity=-0.003 Sum_probs=130.6
Q ss_pred HHHhcCChHHHHHHHHHHhcCCCCCCHh-------hHHHHHH-HHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCCCHH
Q 003829 533 ALARGGMWEQSEKIFAEMKGGRCKPNEL-------TYSSLLH-AYANGREIDQMLALSEEIYSERAFLELKKKGFSPDIP 604 (793)
Q Consensus 533 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~-------~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 604 (793)
......++.+|..++.++...-..|+.. .+..+-. .....|+.+.+.++.+.... ..-.....+...
T Consensus 424 ~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~-----~L~~~~~~~r~~ 498 (894)
T COG2909 424 LLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALV-----QLPEAAYRSRIV 498 (894)
T ss_pred HHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----hcccccchhhhh
Confidence 3445678888888887765432122211 2333322 22357889999998877643 333334445667
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH-----HHHHccCCH--HHHHHHHHHHHHCC---CC---C
Q 003829 605 TLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLM-----YMYSRSENF--ARAEDVLREILAKG---IK---P 671 (793)
Q Consensus 605 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~g~~--~~A~~~~~~~~~~~---~~---~ 671 (793)
.+..+..+..-.|++++|..+.....+..-.-+...+.... ..+...|+. ++....+....... .+ +
T Consensus 499 ~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f 578 (894)
T COG2909 499 ALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEF 578 (894)
T ss_pred hhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchh
Confidence 77888888888999999999887776542223433332222 234556633 23333333333210 11 1
Q ss_pred CHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHHcCC----CCCHH
Q 003829 672 DIISYNTVIFAYCRN-GRMKEASRIFSEMRDSGLVPDV--ITYNTFVASYAADSLFVEALDVVRYMIKQGC----KPNQN 744 (793)
Q Consensus 672 ~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~p~~~ 744 (793)
-..++..+++++.+. +.-.++...+..-......|-. ..+..|+.++...|+.++|...+.++..... .++..
T Consensus 579 ~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~ 658 (894)
T COG2909 579 LVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYL 658 (894)
T ss_pred HHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHH
Confidence 234555566666552 2333444444444333333322 2234788889999999999999998875322 22333
Q ss_pred HHHHHHHH--HHccCCHHHHHHHHHHH
Q 003829 745 TYNSIVDG--YCKLNQRYEAITFVNNL 769 (793)
Q Consensus 745 ~~~~l~~~--~~~~g~~~~A~~~~~~~ 769 (793)
....++.. ....|+..+|..+..+-
T Consensus 659 a~~~~v~~~lwl~qg~~~~a~~~l~~s 685 (894)
T COG2909 659 AAAYKVKLILWLAQGDKELAAEWLLKS 685 (894)
T ss_pred HHHHHhhHHHhcccCCHHHHHHHHHhc
Confidence 33333333 33678999998888773
No 265
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.16 E-value=1.5 Score=37.79 Aligned_cols=124 Identities=10% Similarity=0.189 Sum_probs=63.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC
Q 003829 213 SLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRG 292 (793)
Q Consensus 213 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 292 (793)
.++..+...+.......+++.+...+. .+....+.++..|++.+ ..+..++++. ..+.+....++..|.+.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~--~~~ll~~l~~------~~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD--PQKEIERLDN------KSNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC--HHHHHHHHHh------ccccCCHHHHHHHHHHc
Confidence 455555555666666666666665542 35556666666666543 3444444432 12333344455556666
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CChHHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Q 003829 293 SLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKC-RRPKEAMQVLREMKINGCLPSIVTYNSLISAYA 360 (793)
Q Consensus 293 ~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 360 (793)
+.++++..++.++.. |...+..+.+. ++++.|.+.+.+- .+...|..++..+.
T Consensus 83 ~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l 136 (140)
T smart00299 83 KLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALL 136 (140)
T ss_pred CcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHH
Confidence 666666666654422 11122222223 5666666666541 14455655555544
No 266
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.09 E-value=0.3 Score=40.83 Aligned_cols=51 Identities=14% Similarity=0.098 Sum_probs=26.5
Q ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHH
Q 003829 345 CLPSIVTYNSLISAYARDGLLEEAMELKTQMVEI-GITPDVFTYTTLLSGFE 395 (793)
Q Consensus 345 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~~~~~~~~~li~~~~ 395 (793)
..|+..+..+++.+|+.+|++..|+++++...+. +++.+..++..|++.+.
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 3455555555555555555555555555554433 34444555555555443
No 267
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.06 E-value=3.4 Score=39.64 Aligned_cols=54 Identities=17% Similarity=0.124 Sum_probs=29.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003829 357 SAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMR 411 (793)
Q Consensus 357 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 411 (793)
......|++.+|..+|+...... +-+...-..++.+|...|+.+.|..++..+.
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP 195 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALP 195 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCc
Confidence 34455566666666666655542 2223344445556666666666666665544
No 268
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.05 E-value=6.3 Score=42.69 Aligned_cols=165 Identities=9% Similarity=0.030 Sum_probs=96.1
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHH----HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 003829 612 IYGRRQMVAKTNEILHFMNDSGFTPSLTT----YNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNG 687 (793)
Q Consensus 612 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 687 (793)
++..-|+-++|..+.++|.... |+.. .-.+..+|+-.|+..-..+++.-.... ...|+.-+..+.-++.-..
T Consensus 510 aL~~ygrqe~Ad~lI~el~~dk---dpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD-~nDDVrRaAVialGFVl~~ 585 (929)
T KOG2062|consen 510 ALVVYGRQEDADPLIKELLRDK---DPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSD-VNDDVRRAAVIALGFVLFR 585 (929)
T ss_pred HHHHhhhhhhhHHHHHHHhcCC---chhhhhhhHHHHHHHHhccCchhhHHHhhcccccc-cchHHHHHHHHHheeeEec
Confidence 4455677778888888887643 3222 234556777788777666666655543 3445666666666777777
Q ss_pred CHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-H---HHHHHHHHHHHccC----
Q 003829 688 RMKEASRIFSEMRDSGLVPDV--ITYNTFVASYAADSLFVEALDVVRYMIKQGCKPN-Q---NTYNSIVDGYCKLN---- 757 (793)
Q Consensus 688 ~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~---~~~~~l~~~~~~~g---- 757 (793)
+.+....+.+-+.++ ..|-. .+--+|+-+|.-.|. .+|+.+++-|.. .|. . ...-.++-..+++.
T Consensus 586 dp~~~~s~V~lLses-~N~HVRyGaA~ALGIaCAGtG~-~eAi~lLepl~~---D~~~fVRQgAlIa~amIm~Q~t~~~~ 660 (929)
T KOG2062|consen 586 DPEQLPSTVSLLSES-YNPHVRYGAAMALGIACAGTGL-KEAINLLEPLTS---DPVDFVRQGALIALAMIMIQQTEQLC 660 (929)
T ss_pred ChhhchHHHHHHhhh-cChhhhhhHHHHHhhhhcCCCc-HHHHHHHhhhhc---ChHHHHHHHHHHHHHHHHHhcccccC
Confidence 888888888777764 33332 334455556666665 679999999875 222 1 11222222333332
Q ss_pred -CHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 003829 758 -QRYEAITFVNNLSKLDPHVTKELECKLS 785 (793)
Q Consensus 758 -~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 785 (793)
++...++.+.+.+...-++.-..+..++
T Consensus 661 pkv~~frk~l~kvI~dKhEd~~aK~GAil 689 (929)
T KOG2062|consen 661 PKVNGFRKQLEKVINDKHEDGMAKFGAIL 689 (929)
T ss_pred chHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 3555566666665544444444455433
No 269
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=94.96 E-value=0.73 Score=38.57 Aligned_cols=48 Identities=8% Similarity=0.120 Sum_probs=24.0
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHH
Q 003829 669 IKPDIISYNTVIFAYCRNGRMKEASRIFSEMRD-SGLVPDVITYNTFVA 716 (793)
Q Consensus 669 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p~~~~~~~l~~ 716 (793)
+.|+..+..+++.+|+.+|++..|.++++...+ .++..+..+|..|+.
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 344555555555555555555555555555544 233334444544444
No 270
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.94 E-value=7.2 Score=44.84 Aligned_cols=26 Identities=15% Similarity=0.293 Sum_probs=14.7
Q ss_pred HHHHHHHHHhcC--CHHHHHHHHHHHHH
Q 003829 352 YNSLISAYARDG--LLEEAMELKTQMVE 377 (793)
Q Consensus 352 ~~~li~~~~~~g--~~~~A~~~~~~m~~ 377 (793)
...+|..|++.+ .+++|++...+...
T Consensus 793 ~~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 793 NLFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred hHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 334556666665 55666655555553
No 271
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.94 E-value=1.7 Score=42.07 Aligned_cols=120 Identities=13% Similarity=0.078 Sum_probs=71.7
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHH--HHHcCCC
Q 003829 218 YASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSA-GVKPDSYTFNTLIS--CCRRGSL 294 (793)
Q Consensus 218 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~--~~~~~~~ 294 (793)
+...|++.+|...++++++. .+.|..+++..=.+|..+| +...-...++++.-. +....-..|..-+. ++...|-
T Consensus 113 ~~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G-~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNG-NQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred hhccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhcc-chhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhcc
Confidence 44567778888888888765 4557777777777777777 556666666665443 21111223333222 2335666
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 003829 295 HEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREM 340 (793)
Q Consensus 295 ~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 340 (793)
+++|++.-++..+.+ +.|...-.++.+++--.|++.++.+...+-
T Consensus 191 y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 191 YDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred chhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 777776666666554 235555566666666666666666665543
No 272
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.93 E-value=0.25 Score=46.23 Aligned_cols=104 Identities=24% Similarity=0.371 Sum_probs=64.1
Q ss_pred CHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHH
Q 003829 207 DVYAYTSLITTYAS-----NGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYT 281 (793)
Q Consensus 207 ~~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~~~~p~~~~ 281 (793)
|..+|...+..+.. .+..+--...+..|.+.|+..|..+|+.|++.+-+... -|. ..
T Consensus 66 dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkf-----------------iP~-nv 127 (406)
T KOG3941|consen 66 DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKF-----------------IPQ-NV 127 (406)
T ss_pred cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccc-----------------ccH-HH
Confidence 34444444444432 34456566677888888999999999999988876441 111 11
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 003829 282 FNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRP 330 (793)
Q Consensus 282 ~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 330 (793)
|..+.--|- .+.+-+..++++|...|+-||..+-..|+++|++.+-.
T Consensus 128 fQ~~F~HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 128 FQKVFLHYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHHHHhhCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 112221122 22344677788888888888888777788877776643
No 273
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.88 E-value=0.7 Score=48.46 Aligned_cols=26 Identities=23% Similarity=0.156 Sum_probs=11.6
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHH
Q 003829 349 IVTYNSLISAYARDGLLEEAMELKTQ 374 (793)
Q Consensus 349 ~~~~~~li~~~~~~g~~~~A~~~~~~ 374 (793)
...|..|.....+.|+++-|.+.|.+
T Consensus 347 ~~~W~~Lg~~AL~~g~~~lAe~c~~k 372 (443)
T PF04053_consen 347 PEKWKQLGDEALRQGNIELAEECYQK 372 (443)
T ss_dssp HHHHHHHHHHHHHTTBHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 33444444444444444444444443
No 274
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.87 E-value=0.97 Score=47.43 Aligned_cols=153 Identities=13% Similarity=0.153 Sum_probs=77.9
Q ss_pred hccCCHHHHHHHHH--HHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHcCCCHHH
Q 003829 500 SRCGSFDQAMSIYK--RMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQ 577 (793)
Q Consensus 500 ~~~g~~~~a~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 577 (793)
.-.|+++.+.++.+ ++.. ..+....+.++..+.+.|..+.|+.+..+-.. -.....+.|+++.
T Consensus 272 v~~~d~~~v~~~i~~~~ll~---~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~------------rFeLAl~lg~L~~ 336 (443)
T PF04053_consen 272 VLRGDFEEVLRMIAASNLLP---NIPKDQGQSIARFLEKKGYPELALQFVTDPDH------------RFELALQLGNLDI 336 (443)
T ss_dssp HHTT-HHH-----HHHHTGG---G--HHHHHHHHHHHHHTT-HHHHHHHSS-HHH------------HHHHHHHCT-HHH
T ss_pred HHcCChhhhhhhhhhhhhcc---cCChhHHHHHHHHHHHCCCHHHHHhhcCChHH------------HhHHHHhcCCHHH
Confidence 34566666555553 1111 11244466667777777777777766533221 1233446677777
Q ss_pred HHHHHHHHHhHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHH
Q 003829 578 MLALSEEIYSERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARA 657 (793)
Q Consensus 578 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 657 (793)
|.++.+ ...+...|..|.+...++|+++-|.+.|.+..+ +..|+-.|.-.|+.++-
T Consensus 337 A~~~a~---------------~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L 392 (443)
T PF04053_consen 337 ALEIAK---------------ELDDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKL 392 (443)
T ss_dssp HHHHCC---------------CCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHH
T ss_pred HHHHHH---------------hcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHH
Confidence 665432 123556677777777777777777777766542 33455556666776666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003829 658 EDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFS 697 (793)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 697 (793)
.++.+.....| -++....++...|+.++..+++.
T Consensus 393 ~kl~~~a~~~~------~~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 393 SKLAKIAEERG------DINIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp HHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHH
T ss_pred HHHHHHHHHcc------CHHHHHHHHHHcCCHHHHHHHHH
Confidence 66666655543 23344444555566666665553
No 275
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=94.78 E-value=0.11 Score=49.87 Aligned_cols=93 Identities=18% Similarity=0.232 Sum_probs=48.6
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHH
Q 003829 682 AYCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRY 760 (793)
Q Consensus 682 ~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 760 (793)
-|.+.|.+++|..+|...+. ..| +.+++..-+.+|.+..++..|..-.+.++..+ .--...|..-+.+-...|+..
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~~ 182 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNNM 182 (536)
T ss_pred hhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhHH
Confidence 35556666666666655555 334 45555555555666655555555555544321 001233444444444555566
Q ss_pred HHHHHHHHHhhCCCCCC
Q 003829 761 EAITFVNNLSKLDPHVT 777 (793)
Q Consensus 761 ~A~~~~~~~~~~~~~~~ 777 (793)
||.+=++.++++.|++.
T Consensus 183 EAKkD~E~vL~LEP~~~ 199 (536)
T KOG4648|consen 183 EAKKDCETVLALEPKNI 199 (536)
T ss_pred HHHHhHHHHHhhCcccH
Confidence 66666666666666543
No 276
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.72 E-value=2.6 Score=36.65 Aligned_cols=123 Identities=11% Similarity=0.037 Sum_probs=59.6
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHH---HHHHcCCCH
Q 003829 220 SNGRYREAVMVFKKMEEEGCKPTLI-TYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLI---SCCRRGSLH 295 (793)
Q Consensus 220 ~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~ll~~~~~~g~~~~~a~~~~~~~~~~~~~p~~~~~~~l~---~~~~~~~~~ 295 (793)
..++.++|+..|..+.+.|..--.+ ....+.......| +...|+..|+++-.....|...-=..-+ -.+...|.+
T Consensus 70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kg-dta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKG-DTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcc-cHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 4455556666666655554332221 2222223333444 5555555555555444333322111111 123455666
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003829 296 EEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKIN 343 (793)
Q Consensus 296 ~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 343 (793)
+......+.+...+-+.....-.+|.-+-.|.|++.+|.+.|+.+...
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 666555555554443333344455555556677777777777666543
No 277
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.51 E-value=0.027 Score=34.89 Aligned_cols=25 Identities=16% Similarity=0.155 Sum_probs=13.2
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHh
Q 003829 746 YNSIVDGYCKLNQRYEAITFVNNLS 770 (793)
Q Consensus 746 ~~~l~~~~~~~g~~~~A~~~~~~~~ 770 (793)
|..|+..|.+.|++++|++++++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4455555555555555555555543
No 278
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=94.31 E-value=4 Score=37.03 Aligned_cols=29 Identities=34% Similarity=0.197 Sum_probs=18.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 003829 350 VTYNSLISAYARDGLLEEAMELKTQMVEI 378 (793)
Q Consensus 350 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 378 (793)
.||--+.+.+...|+.++|..+|+-.+..
T Consensus 238 EtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 238 ETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 35666666666666666666666666654
No 279
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.30 E-value=4.3 Score=37.35 Aligned_cols=23 Identities=17% Similarity=0.209 Sum_probs=16.3
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCC
Q 003829 683 YCRNGRMKEASRIFSEMRDSGLV 705 (793)
Q Consensus 683 ~~~~g~~~~A~~~~~~~~~~~~~ 705 (793)
-...+++.+|.++|++.....+.
T Consensus 164 aa~leqY~~Ai~iyeqva~~s~~ 186 (288)
T KOG1586|consen 164 AAQLEQYSKAIDIYEQVARSSLD 186 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 34557788888888888775554
No 280
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.12 E-value=6.5 Score=38.74 Aligned_cols=19 Identities=5% Similarity=-0.190 Sum_probs=12.0
Q ss_pred HHHhCCChHHHHHHHHHHH
Q 003829 463 VFGQNGMDSEVSGVFKEMK 481 (793)
Q Consensus 463 ~~~~~~~~~~a~~~~~~m~ 481 (793)
.+.+.+++++|.+.|+-..
T Consensus 255 ~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 255 KHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHhhcCHHHHHHHHHHHH
Confidence 3456677777777776433
No 281
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=94.04 E-value=4.6 Score=36.68 Aligned_cols=30 Identities=20% Similarity=0.139 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 003829 385 FTYTTLLSGFEKAGKDESAMKVFEEMRSAG 414 (793)
Q Consensus 385 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 414 (793)
.||.-+.+.+...|++++|..+|+-.+..+
T Consensus 238 EtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 238 ETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 467778888888888888888888877653
No 282
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=93.82 E-value=0.26 Score=32.20 Aligned_cols=39 Identities=13% Similarity=0.250 Sum_probs=22.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHH
Q 003829 710 TYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIV 750 (793)
Q Consensus 710 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~ 750 (793)
++..++..|...|++++|+++++++++. .| |...|..++
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~--~P~~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL--DPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCCHHHHHHhh
Confidence 4556666666666666666666666663 33 345544443
No 283
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=93.75 E-value=0.089 Score=31.99 Aligned_cols=32 Identities=22% Similarity=0.408 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHhhCCCC
Q 003829 744 NTYNSIVDGYCKLNQRYEAITFVNNLSKLDPH 775 (793)
Q Consensus 744 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 775 (793)
.+|..++..|...|++++|...++++++.+|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 35667777888888888888888888877763
No 284
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.57 E-value=3.5 Score=35.75 Aligned_cols=110 Identities=14% Similarity=0.104 Sum_probs=59.5
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCCh
Q 003829 647 MYSRSENFARAEDVLREILAKGIKPDIISY-NTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYA-ADSLF 724 (793)
Q Consensus 647 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~ 724 (793)
.-.+.++.+++..+++.+.-. .|..... ..-...+...|+|.+|..+|+++.+.. |....-..|...|. ..|+
T Consensus 19 ~al~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL~~~~D- 93 (160)
T PF09613_consen 19 VALRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA--PGFPYAKALLALCLYALGD- 93 (160)
T ss_pred HHHccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHHHHHcCC-
Confidence 345677888888888888774 5553322 223455677888888888888877643 22222233333333 3333
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 003829 725 VEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAIT 764 (793)
Q Consensus 725 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 764 (793)
..=..+.+++++.+- |..+- .|+..+....+...|..
T Consensus 94 ~~Wr~~A~evle~~~--d~~a~-~Lv~~Ll~~~~~~~a~~ 130 (160)
T PF09613_consen 94 PSWRRYADEVLESGA--DPDAR-ALVRALLARADLEPAHE 130 (160)
T ss_pred hHHHHHHHHHHhcCC--ChHHH-HHHHHHHHhccccchhh
Confidence 233344455555433 33322 34444555555545544
No 285
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=93.57 E-value=0.67 Score=43.48 Aligned_cols=33 Identities=12% Similarity=0.251 Sum_probs=19.1
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003829 398 GKDESAMKVFEEMRSAGCKPNICTFNALIKMHG 430 (793)
Q Consensus 398 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 430 (793)
+.++-....++.|.+.|+.-|..+|+.|++.+-
T Consensus 86 ~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfP 118 (406)
T KOG3941|consen 86 THVEFIYTALKYMKEYGVERDLDVYKGLLNVFP 118 (406)
T ss_pred chHHHHHHHHHHHHHhcchhhHHHHHHHHHhCc
Confidence 344444555566666666666666666665543
No 286
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.53 E-value=1.2 Score=40.13 Aligned_cols=98 Identities=13% Similarity=0.120 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHH---cCCCCCH----H
Q 003829 674 ISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDV--ITYNTFVASYAADSLFVEALDVVRYMIK---QGCKPNQ----N 744 (793)
Q Consensus 674 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~p~~----~ 744 (793)
..+..++.-|++.|+.++|.+.|.++.+....+.. ..+..+++.....|++..+...+.++.. .|-..+. .
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 45666777777777777777777777775444333 4556677777777777777777666653 2211111 1
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhCC
Q 003829 745 TYNSIVDGYCKLNQRYEAITFVNNLSKLD 773 (793)
Q Consensus 745 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 773 (793)
.|..| .+...|++.+|.+.|-+.....
T Consensus 117 ~~~gL--~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 117 VYEGL--ANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHH--HHHHhchHHHHHHHHHccCcCC
Confidence 12222 2445678888887777766544
No 287
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=93.52 E-value=0.13 Score=54.82 Aligned_cols=12 Identities=50% Similarity=0.844 Sum_probs=4.7
Q ss_pred CCCCCCCCCCCC
Q 003829 12 PTPPPAKPLFLT 23 (793)
Q Consensus 12 ~~p~~~~~~~~~ 23 (793)
|.|||++|++..
T Consensus 280 s~ppppap~p~~ 291 (830)
T KOG1923|consen 280 SGPPPPAPLPHT 291 (830)
T ss_pred CCCCCCCCCCCc
Confidence 333433344433
No 288
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=93.50 E-value=0.08 Score=32.23 Aligned_cols=31 Identities=29% Similarity=0.446 Sum_probs=18.2
Q ss_pred HHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHH
Q 003829 731 VRYMIKQGCKP-NQNTYNSIVDGYCKLNQRYEAI 763 (793)
Q Consensus 731 ~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~ 763 (793)
|+++++. .| +...|..++..|...|++++|+
T Consensus 2 y~kAie~--~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIEL--NPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHH--CCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 3455552 34 3666666666666666666664
No 289
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=93.34 E-value=7.5 Score=36.89 Aligned_cols=201 Identities=17% Similarity=0.160 Sum_probs=89.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH-H
Q 003829 351 TYNSLISAYARDGLLEEAMELKTQMVEI-GITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIK-M 428 (793)
Q Consensus 351 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~-~ 428 (793)
.+......+...+++..+...+...... ........+......+...+++..+...+.......... ......... .
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 139 (291)
T COG0457 61 LLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALGA 139 (291)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHHH
Confidence 3444444444455555555444444431 112233333344444444444555555555544432221 111111111 4
Q ss_pred HHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHH
Q 003829 429 HGNRGNFVEMMKVFDEINKCNC--KPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFD 506 (793)
Q Consensus 429 ~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~ 506 (793)
+...|+++.|...+.+...... ......+......+...++.+.+...+..............+..+...+...++++
T Consensus 140 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (291)
T COG0457 140 LYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYE 219 (291)
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHH
Confidence 5555555555555555533110 01122222223334455555566555555554321112344555555566666666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhcC
Q 003829 507 QAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGG 553 (793)
Q Consensus 507 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 553 (793)
.+...+......... ....+..+...+...+..+++...+.+....
T Consensus 220 ~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 220 EALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 666666666554222 1223333333333555566666666665543
No 290
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=93.06 E-value=18 Score=40.50 Aligned_cols=88 Identities=14% Similarity=0.062 Sum_probs=48.6
Q ss_pred HhCCChHHHHHHHHHHHHcCC-CCC-------HHHHHHHHHHHhccCCHHHHHHHHH--------HHHHCCCCCCHHHHH
Q 003829 465 GQNGMDSEVSGVFKEMKRAGF-IPE-------RDTFNTLISAYSRCGSFDQAMSIYK--------RMLEAGVTPDLSTYN 528 (793)
Q Consensus 465 ~~~~~~~~a~~~~~~m~~~~~-~~~-------~~~~~~l~~~~~~~g~~~~a~~~~~--------~~~~~~~~~~~~~~~ 528 (793)
+-.+++..+...++.|.+... .|+ ...+....-.+-..|+.+.|...|. .....+...+..++.
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila 451 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILA 451 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHH
Confidence 356888889988888876421 111 2223333334446789999999997 444555554555444
Q ss_pred HHHH--HHHhcC--ChHH--HHHHHHHHhc
Q 003829 529 AVLA--ALARGG--MWEQ--SEKIFAEMKG 552 (793)
Q Consensus 529 ~l~~--~~~~~g--~~~~--A~~~~~~~~~ 552 (793)
.+=. .+...+ ..++ +..+++.+..
T Consensus 452 ~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p 481 (608)
T PF10345_consen 452 ALNLAIILQYESSRDDSESELNELLEQIEP 481 (608)
T ss_pred HHHHHHHhHhhcccchhhhHHHHHHHhcCc
Confidence 3221 222222 2223 6666666543
No 291
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.95 E-value=0.23 Score=30.72 Aligned_cols=26 Identities=12% Similarity=0.212 Sum_probs=20.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHH
Q 003829 710 TYNTFVASYAADSLFVEALDVVRYMI 735 (793)
Q Consensus 710 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 735 (793)
+|..|+.+|.+.|++++|++++++++
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46788888889999999999888855
No 292
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=92.81 E-value=4.9 Score=33.30 Aligned_cols=134 Identities=16% Similarity=0.134 Sum_probs=69.6
Q ss_pred cCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhH---HHHHHHHHHhcCCHHH
Q 003829 291 RGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVT---YNSLISAYARDGLLEE 367 (793)
Q Consensus 291 ~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~ 367 (793)
-.|..++..++..+.... .+..-||-+|.-....-+-+...++++.+-+- .|... ...++.+|++.|...+
T Consensus 14 ldG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGki---FDis~C~NlKrVi~C~~~~n~~se 87 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKI---FDISKCGNLKRVIECYAKRNKLSE 87 (161)
T ss_dssp HTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGG---S-GGG-S-THHHHHHHHHTT---H
T ss_pred HhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCchhhcchHHHHHHHHHhcchHH
Confidence 357777777777777664 24555555555444444555555555555221 22221 2334445544443322
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003829 368 AMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINK 447 (793)
Q Consensus 368 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 447 (793)
.....+..+...|+-|.-.+++.++.+. -.+++...-.+..+|.+.|+..++.+++.+.-+
T Consensus 88 ------------------~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 88 ------------------YVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp ------------------HHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred ------------------HHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 2333455666677777777777776642 255666677777777777777777777777666
Q ss_pred CC
Q 003829 448 CN 449 (793)
Q Consensus 448 ~~ 449 (793)
.|
T Consensus 149 kG 150 (161)
T PF09205_consen 149 KG 150 (161)
T ss_dssp TT
T ss_pred hc
Confidence 55
No 293
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=92.67 E-value=1.7 Score=36.07 Aligned_cols=74 Identities=11% Similarity=0.201 Sum_probs=54.9
Q ss_pred CCCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHH
Q 003829 705 VPDVITYNTFVASYAADSL---FVEALDVVRYMIKQGCKPN--QNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKE 779 (793)
Q Consensus 705 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 779 (793)
.+...+--.+.+++.++.+ ..+.+.++++..+.. .|+ .+....|+-++++.|++++++.+++.+++..|++...
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~-~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa 107 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSA-HPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQA 107 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhc-CcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHH
Confidence 4455667778888887766 455688888887632 333 3444566778889999999999999999999888765
No 294
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.60 E-value=0.9 Score=43.70 Aligned_cols=79 Identities=15% Similarity=0.152 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-----CCCCCCHHHH
Q 003829 208 VYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKS-----AGVKPDSYTF 282 (793)
Q Consensus 208 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~-----~~~~p~~~~~ 282 (793)
..++..++..+...|+++.+...++++.+.. +-+...|..++.+|.+.| +...|+..|+++.+ .|+.|-..+.
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g-~~~~ai~~y~~l~~~~~edlgi~P~~~~~ 230 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNG-RQSAAIRAYRQLKKTLAEELGIDPAPELR 230 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcC-CchHHHHHHHHHHHHhhhhcCCCccHHHH
Confidence 3456666666666666666666666666653 235566666666666666 66666666666544 4666666665
Q ss_pred HHHHHH
Q 003829 283 NTLISC 288 (793)
Q Consensus 283 ~~l~~~ 288 (793)
......
T Consensus 231 ~~y~~~ 236 (280)
T COG3629 231 ALYEEI 236 (280)
T ss_pred HHHHHH
Confidence 555555
No 295
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=92.57 E-value=0.17 Score=30.35 Aligned_cols=30 Identities=30% Similarity=0.387 Sum_probs=21.3
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHhhCCCC
Q 003829 746 YNSIVDGYCKLNQRYEAITFVNNLSKLDPH 775 (793)
Q Consensus 746 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 775 (793)
+-.++.++.+.|++++|++.++++++..|+
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 345666777777777777777777777765
No 296
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=92.56 E-value=14 Score=37.99 Aligned_cols=65 Identities=11% Similarity=-0.020 Sum_probs=44.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 003829 602 DIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTP---SLTTYNTLMYMYSRSENFARAEDVLREILA 666 (793)
Q Consensus 602 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 666 (793)
...++..++..+.+.|.++.|...+..+.+.+... .+.+.-.-+...-..|+..+|+..+++.+.
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34567777888888888888888888877643111 233333445566677888888888887776
No 297
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.54 E-value=6.9 Score=35.10 Aligned_cols=93 Identities=13% Similarity=0.093 Sum_probs=70.6
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 003829 644 LMYMYSRSENFARAEDVLREILAKGIKPD--IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAAD 721 (793)
Q Consensus 644 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 721 (793)
+...+..+|++++|+..++..+...-.-+ ..+-..|.......|.+++|++.++...+.+.. ......-+.++...
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDill~k 172 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDILLAK 172 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHHHHc
Confidence 44557889999999999998885411111 122334567788899999999999998875543 34567778899999
Q ss_pred CChHHHHHHHHHHHHcC
Q 003829 722 SLFVEALDVVRYMIKQG 738 (793)
Q Consensus 722 g~~~~A~~~~~~~~~~~ 738 (793)
|+-++|..-|++.++.+
T Consensus 173 g~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 173 GDKQEARAAYEKALESD 189 (207)
T ss_pred CchHHHHHHHHHHHHcc
Confidence 99999999999999864
No 298
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=92.34 E-value=11 Score=36.14 Aligned_cols=53 Identities=19% Similarity=0.122 Sum_probs=25.5
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003829 322 DVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQM 375 (793)
Q Consensus 322 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 375 (793)
..|.++|.+.+|.++.+..+.- .+.+...|..++..+...|+--.|.+-++++
T Consensus 287 ~~yle~g~~neAi~l~qr~ltl-dpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 287 RAYLEAGKPNEAIQLHQRALTL-DPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHcCChHHHHHHHHHHhhc-ChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 4444555555555555554443 2234444445555555555544444444444
No 299
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.11 E-value=7.5 Score=33.82 Aligned_cols=74 Identities=16% Similarity=0.075 Sum_probs=41.1
Q ss_pred HHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 003829 180 ISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKM 256 (793)
Q Consensus 180 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~ 256 (793)
+..-.+.++.+.+..++..+.-..+. ....-..-+..+.+.|++.+|+.+|+++.+.. |.......|+..|...
T Consensus 17 ~~~al~~~~~~D~e~lL~ALrvLRP~-~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL~~ 90 (160)
T PF09613_consen 17 LSVALRLGDPDDAEALLDALRVLRPE-FPELDLFDGWLHIVRGDWDDALRLLRELEERA--PGFPYAKALLALCLYA 90 (160)
T ss_pred HHHHHccCChHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHHHHH
Confidence 33444566777777777766554333 22333334455667777777777777776542 3333344444444443
No 300
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=91.96 E-value=14 Score=36.59 Aligned_cols=82 Identities=17% Similarity=0.315 Sum_probs=36.2
Q ss_pred HHHHHHHHHHcCCCCChhHHHHHHHHHHh--c----CCHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHHcCCH---
Q 003829 333 AMQVLREMKINGCLPSIVTYNSLISAYAR--D----GLLEEAMELKTQMVEIGI---TPDVFTYTTLLSGFEKAGKD--- 400 (793)
Q Consensus 333 A~~~~~~~~~~~~~~~~~~~~~li~~~~~--~----g~~~~A~~~~~~m~~~g~---~~~~~~~~~li~~~~~~g~~--- 400 (793)
...+++.|.+.|...+..+|.+....... . -...+|.++++.|++... .++...+..++.. ..++.
T Consensus 81 ~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l 158 (297)
T PF13170_consen 81 VLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEEL 158 (297)
T ss_pred HHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHHH
Confidence 34555556666655555444332221111 1 124456666666665531 2233444444322 22222
Q ss_pred -HHHHHHHHHHHHCCCC
Q 003829 401 -ESAMKVFEEMRSAGCK 416 (793)
Q Consensus 401 -~~a~~~~~~~~~~~~~ 416 (793)
+.++.+|+.+.+.|+.
T Consensus 159 ~~~~E~~Y~~L~~~~f~ 175 (297)
T PF13170_consen 159 AERMEQCYQKLADAGFK 175 (297)
T ss_pred HHHHHHHHHHHHHhCCC
Confidence 3344555555555544
No 301
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.87 E-value=4.7 Score=34.34 Aligned_cols=53 Identities=23% Similarity=0.241 Sum_probs=32.3
Q ss_pred HccCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 003829 649 SRSENFARAEDVLREILAKGIKPDII-SYNTVIFAYCRNGRMKEASRIFSEMRDSG 703 (793)
Q Consensus 649 ~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 703 (793)
...++.+++..+++.|.-. .|+.. .-..-...+...|+|++|..+|+++.+.+
T Consensus 21 L~~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVL--RPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred HhcCCHHHHHHHHHHHHHh--CCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 3467777777777777763 44422 22222344566777777777777777644
No 302
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=91.84 E-value=4.9 Score=36.22 Aligned_cols=61 Identities=18% Similarity=0.153 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003829 351 TYNSLISAYARDGLLEEAMELKTQMVEIGITPDV--FTYTTLLSGFEKAGKDESAMKVFEEMR 411 (793)
Q Consensus 351 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~~~ 411 (793)
.+..+...|++.|+.++|++.+.++.+....+.. ..+..+|......|++..+...+.+..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 4445555555555555555555555554322221 233444555555555555555554443
No 303
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=91.83 E-value=0.42 Score=28.94 Aligned_cols=26 Identities=23% Similarity=0.327 Sum_probs=10.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003829 676 YNTVIFAYCRNGRMKEASRIFSEMRD 701 (793)
Q Consensus 676 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 701 (793)
|..++.+|...|++++|...|+++++
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 33444444444444444444444444
No 304
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=91.83 E-value=14 Score=36.49 Aligned_cols=63 Identities=21% Similarity=0.370 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH--c----CCHHHHHHHHHHHHHCCC---CCCHHHHHHHHH
Q 003829 365 LEEAMELKTQMVEIGITPDVFTYTTLLSGFEK--A----GKDESAMKVFEEMRSAGC---KPNICTFNALIK 427 (793)
Q Consensus 365 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~--~----g~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~ 427 (793)
+++.+.+++.|++.|+.-+..+|.+....... . .....+..+++.|++... .++...+..++.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA 149 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLA 149 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHh
Confidence 44556677788888877776555543322222 1 234567778888877642 233444444443
No 305
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=91.80 E-value=0.21 Score=30.34 Aligned_cols=31 Identities=23% Similarity=0.463 Sum_probs=18.8
Q ss_pred HHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHH
Q 003829 696 FSEMRDSGLVP-DVITYNTFVASYAADSLFVEAL 728 (793)
Q Consensus 696 ~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~ 728 (793)
|+++++ ..| +...|+.++..|...|++++|+
T Consensus 2 y~kAie--~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIE--LNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHH--HCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 445555 334 4466677777777777766664
No 306
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.74 E-value=24 Score=38.87 Aligned_cols=104 Identities=11% Similarity=0.100 Sum_probs=64.1
Q ss_pred HHHHHhcCChHHHHHHHHHHhhCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 003829 180 ISMLGKEGKVSVAASLLHGLHKDGFD-IDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGM 258 (793)
Q Consensus 180 ~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~ 258 (793)
++-+.+.+.+++|+++.+.....-.. .....+...|..+...|++++|-...-+|... +...|..-+..+...+
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~- 437 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELD- 437 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhcccc-
Confidence 44556778888888877765433111 13457788888888889999998888888753 5666666666666555
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 003829 259 PWNKIMALVEGMKSAGVKPDSYTFNTLISCCRR 291 (793)
Q Consensus 259 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 291 (793)
.... ++.-+.......+...|..++..|..
T Consensus 438 ~l~~---Ia~~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 438 QLTD---IAPYLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred ccch---hhccCCCCCcccCchHHHHHHHHHHH
Confidence 2221 11112222222455677777777665
No 307
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=91.66 E-value=31 Score=40.06 Aligned_cols=137 Identities=14% Similarity=0.164 Sum_probs=71.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCh
Q 003829 391 LSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMD 470 (793)
Q Consensus 391 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 470 (793)
++..-+.|.+.+|..++..-.+. -...|.+..+.+...+.+++|.-.|+..-+ ....+.+|...|++
T Consensus 915 ~n~I~kh~Ly~~aL~ly~~~~e~----~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dW 981 (1265)
T KOG1920|consen 915 KNYIKKHGLYDEALALYKPDSEK----QKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDW 981 (1265)
T ss_pred HHHHHhcccchhhhheeccCHHH----HHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccH
Confidence 33334455555555544321111 122344444444455556666555554321 12334556667777
Q ss_pred HHHHHHHHHHHHcCCCCCHH--HHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 003829 471 SEVSGVFKEMKRAGFIPERD--TFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFA 548 (793)
Q Consensus 471 ~~a~~~~~~m~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 548 (793)
.+|..+..++... -+.. +-..|+..+...+++-+|-++..+.... ....+..|++...|++|.++..
T Consensus 982 r~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd--------~~~av~ll~ka~~~~eAlrva~ 1050 (1265)
T KOG1920|consen 982 REALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYLSD--------PEEAVALLCKAKEWEEALRVAS 1050 (1265)
T ss_pred HHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC--------HHHHHHHHhhHhHHHHHHHHHH
Confidence 7777776665432 1111 2255666677777777777777666542 1223444566667777777665
Q ss_pred HHh
Q 003829 549 EMK 551 (793)
Q Consensus 549 ~~~ 551 (793)
...
T Consensus 1051 ~~~ 1053 (1265)
T KOG1920|consen 1051 KAK 1053 (1265)
T ss_pred hcc
Confidence 543
No 308
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.64 E-value=25 Score=38.80 Aligned_cols=74 Identities=14% Similarity=0.082 Sum_probs=40.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 003829 356 ISAYARDGLLEEAMELKTQMVEIGITP---DVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNR 432 (793)
Q Consensus 356 i~~~~~~g~~~~A~~~~~~m~~~g~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 432 (793)
|+.+.+.+.+++|+++.+..... .+ -.......|..+...|++++|-...-.|... +..-|..-+..+...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccc
Confidence 55566677777777665544332 22 1233455566666667777666666666543 444444444444444
Q ss_pred CCH
Q 003829 433 GNF 435 (793)
Q Consensus 433 g~~ 435 (793)
++.
T Consensus 437 ~~l 439 (846)
T KOG2066|consen 437 DQL 439 (846)
T ss_pred ccc
Confidence 433
No 309
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=91.54 E-value=2.4 Score=40.87 Aligned_cols=77 Identities=14% Similarity=0.143 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH-----cCCCCCHHHHHHH
Q 003829 675 SYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIK-----QGCKPNQNTYNSI 749 (793)
Q Consensus 675 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~~~~l 749 (793)
++..++..+...|+++.+.+.++++.+.... +...|..++.+|.+.|+...|+..|+++.+ .|+.|...+...+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 4455556666666666666666666663222 455666666666666666666666666543 4555555554444
Q ss_pred HHH
Q 003829 750 VDG 752 (793)
Q Consensus 750 ~~~ 752 (793)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 443
No 310
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=91.48 E-value=1.6 Score=38.46 Aligned_cols=109 Identities=17% Similarity=0.143 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc---C-------CHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcC
Q 003829 654 FARAEDVLREILAKGIKPDIISYNTVIFAYCRN---G-------RMKEASRIFSEMRDSGLVPDV-ITYNTFVASYAADS 722 (793)
Q Consensus 654 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g-------~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g 722 (793)
++.|++.++.....+ +.|...++....++... . .+++|..-|++++. +.|+. .++..++.+|...+
T Consensus 7 FE~ark~aea~y~~n-P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~--I~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN-PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALK--INPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHHHH
Confidence 567777777755543 44566655555555433 2 24455555666666 77765 78888888888665
Q ss_pred C-----------hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCC
Q 003829 723 L-----------FVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLD 773 (793)
Q Consensus 723 ~-----------~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 773 (793)
. +++|.+.|+++.+ .+|+..+|+.-+... ++|-++..++.+.+
T Consensus 84 ~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~------~kap~lh~e~~~~~ 137 (186)
T PF06552_consen 84 FLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMA------AKAPELHMEIHKQG 137 (186)
T ss_dssp HH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHH------HTHHHHHHHHHHSS
T ss_pred hhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHH------HhhHHHHHHHHHHH
Confidence 3 4555666666665 478888887665543 35666666665553
No 311
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=91.45 E-value=28 Score=39.11 Aligned_cols=19 Identities=32% Similarity=0.300 Sum_probs=11.2
Q ss_pred HHHHhcCChHHHHHHHHHH
Q 003829 181 SMLGKEGKVSVAASLLHGL 199 (793)
Q Consensus 181 ~~~~~~~~~~~A~~~~~~~ 199 (793)
+-..+.|+++.|..++++.
T Consensus 368 ~hAlaA~d~~~aa~lle~~ 386 (894)
T COG2909 368 DHALAAGDPEMAADLLEQL 386 (894)
T ss_pred HHHHhCCCHHHHHHHHHhh
Confidence 3344566666666666644
No 312
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=91.06 E-value=3.6 Score=36.76 Aligned_cols=88 Identities=16% Similarity=0.187 Sum_probs=57.4
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHh
Q 003829 647 MYSRSENFARAEDVLREILAKGIKPD-----IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDV-ITYNTFVASYAA 720 (793)
Q Consensus 647 ~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~ 720 (793)
-+.+.|++++|..-|.+++.. +++. ...|..-..++.+.+.++.|.+-..+.++ +.|.. ..+..-+.+|.+
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaie--l~pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIE--LNPTYEKALERRAEAYEK 180 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHh--cCchhHHHHHHHHHHHHh
Confidence 345667777777777777765 2332 23444455666777778888877777777 44432 444445567777
Q ss_pred cCChHHHHHHHHHHHHc
Q 003829 721 DSLFVEALDVVRYMIKQ 737 (793)
Q Consensus 721 ~g~~~~A~~~~~~~~~~ 737 (793)
...+++|++=|+++.+.
T Consensus 181 ~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILES 197 (271)
T ss_pred hhhHHHHHHHHHHHHHh
Confidence 77788888888887763
No 313
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=90.87 E-value=8.4 Score=31.99 Aligned_cols=63 Identities=17% Similarity=0.337 Sum_probs=34.6
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCC
Q 003829 457 WNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGV 520 (793)
Q Consensus 457 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 520 (793)
.+..+..+...|+-++-.+++.++.+. -.+++.....+..+|.+.|+..++.+++.++-++|+
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 344455556666666666666666542 234666666666677777777777776666666654
No 314
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=90.77 E-value=0.61 Score=28.11 Aligned_cols=25 Identities=12% Similarity=0.141 Sum_probs=10.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHH
Q 003829 712 NTFVASYAADSLFVEALDVVRYMIK 736 (793)
Q Consensus 712 ~~l~~~~~~~g~~~~A~~~~~~~~~ 736 (793)
..++.++...|++++|++.+++.++
T Consensus 5 ~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 5 YYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3344444444444444444444443
No 315
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=90.48 E-value=9.3 Score=39.30 Aligned_cols=110 Identities=15% Similarity=0.089 Sum_probs=77.5
Q ss_pred HHHHccCCHHHHHHHHHHHHHC---CC--CCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------CCCCCCH--
Q 003829 646 YMYSRSENFARAEDVLREILAK---GI--KPD---IISYNTVIFAYCRNGRMKEASRIFSEMRD-------SGLVPDV-- 708 (793)
Q Consensus 646 ~~~~~~g~~~~A~~~~~~~~~~---~~--~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~p~~-- 708 (793)
..+...|++.+|.+++...--. |. .|. -..||.|+-...+.|.+.-+..+|.++++ .|+.|..
T Consensus 248 q~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~ 327 (696)
T KOG2471|consen 248 QLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTF 327 (696)
T ss_pred HHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcce
Confidence 3456688999998887654321 21 111 22357777777778888888888887774 4655522
Q ss_pred --------HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 003829 709 --------ITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKL 756 (793)
Q Consensus 709 --------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 756 (793)
......+-.|...|+.-.|.+.|.+..+. +.-++..|..|+.+|...
T Consensus 328 tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 328 TLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIMA 382 (696)
T ss_pred ehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHH
Confidence 23345566788999999999999999875 677899999999988744
No 316
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=90.43 E-value=2.6 Score=37.18 Aligned_cols=111 Identities=14% Similarity=0.086 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHH---HccCC-------HHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcC
Q 003829 619 VAKTNEILHFMNDSGFTPSLTTYNTLMYMY---SRSEN-------FARAEDVLREILAKGIKPD-IISYNTVIFAYCRNG 687 (793)
Q Consensus 619 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~-------~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g 687 (793)
++.|.+..+.....+ |.|...++.-..++ .+..+ +++|+.-|++.+. +.|+ ..++..++.+|...+
T Consensus 7 FE~ark~aea~y~~n-P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~--I~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN-PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALK--INPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHHHH
Confidence 677777777765554 66777655444443 33333 3444555555555 4666 478888888886554
Q ss_pred C-----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 003829 688 R-----------MKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCK 740 (793)
Q Consensus 688 ~-----------~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 740 (793)
. +++|...|+++.+ ..|+...|+.-+... .+|-++..++.+.+..
T Consensus 84 ~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~------~kap~lh~e~~~~~~~ 139 (186)
T PF06552_consen 84 FLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMA------AKAPELHMEIHKQGLG 139 (186)
T ss_dssp HH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHH------HTHHHHHHHHHHSSS-
T ss_pred hhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHH------HhhHHHHHHHHHHHhh
Confidence 2 5666777777777 788989998877665 3577777777665543
No 317
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=90.37 E-value=0.42 Score=31.00 Aligned_cols=24 Identities=8% Similarity=0.187 Sum_probs=13.6
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhC
Q 003829 749 IVDGYCKLNQRYEAITFVNNLSKL 772 (793)
Q Consensus 749 l~~~~~~~g~~~~A~~~~~~~~~~ 772 (793)
|+.+|...|+.+.|+++++++++.
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 455555555555555555555543
No 318
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=90.09 E-value=13 Score=32.88 Aligned_cols=22 Identities=18% Similarity=0.252 Sum_probs=11.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHH
Q 003829 318 NALLDVYGKCRRPKEAMQVLRE 339 (793)
Q Consensus 318 ~~li~~~~~~g~~~~A~~~~~~ 339 (793)
..++..+...|++-+|+++.+.
T Consensus 93 ~~iievLL~~g~vl~ALr~ar~ 114 (167)
T PF07035_consen 93 EEIIEVLLSKGQVLEALRYARQ 114 (167)
T ss_pred HHHHHHHHhCCCHHHHHHHHHH
Confidence 3444445555555555555544
No 319
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=90.05 E-value=13 Score=32.85 Aligned_cols=100 Identities=15% Similarity=0.227 Sum_probs=43.4
Q ss_pred HHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 003829 336 VLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGC 415 (793)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 415 (793)
+++.+.+.+++++...+..++..+.+.|++... ..++..++-+|.......+-.+. +....+.++=-+|.++
T Consensus 16 YirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L----~qllq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR-- 87 (167)
T PF07035_consen 16 YIRSLNQHNIPVQHELYELLIDLLIRNGQFSQL----HQLLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR-- 87 (167)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH----HHHHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH--
Confidence 344444455555555666666666666654432 33333444444433332222111 1222222222222221
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003829 416 KPNICTFNALIKMHGNRGNFVEMMKVFDEI 445 (793)
Q Consensus 416 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 445 (793)
=...+..+++.+...|++-+|+++.+..
T Consensus 88 --L~~~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 88 --LGTAYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred --hhhhHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 0012344455555566666666655543
No 320
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=90.00 E-value=5.5 Score=31.24 Aligned_cols=60 Identities=17% Similarity=0.258 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003829 691 EASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVD 751 (793)
Q Consensus 691 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 751 (793)
+..+-++.+...++.|++.+..+.+++|.+.+++..|+++++-...+ +.+...+|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHH
Confidence 45666677777778888888888888888888888888888887754 3333336666654
No 321
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=89.83 E-value=2.4 Score=32.73 Aligned_cols=61 Identities=16% Similarity=0.256 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003829 690 KEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVD 751 (793)
Q Consensus 690 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 751 (793)
=++.+-++.+...++.|++.+..+.+++|.+.+++..|+++++-...+ +..+..+|..+++
T Consensus 24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-~~~~~~~y~~~lq 84 (103)
T cd00923 24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-CGAHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccCchhhHHHHHH
Confidence 345566666666677777777777777777777777777777766533 2223445555543
No 322
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=89.55 E-value=3 Score=38.41 Aligned_cols=117 Identities=12% Similarity=0.063 Sum_probs=72.2
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCh
Q 003829 647 MYSRSENFARAEDVLREILAKGIKPDIIS-YNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDV-ITYNTFVASYAADSLF 724 (793)
Q Consensus 647 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~ 724 (793)
.|.....+..|+..|.+.+.. .|+..+ |..-+.++.+..+++.+..--.+.++ +.|+. .....++.++.....+
T Consensus 19 k~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~ 94 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGY 94 (284)
T ss_pred cccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccc
Confidence 355556677888877777763 566543 44556677777788888777777777 66655 4445666667777778
Q ss_pred HHHHHHHHHHHH----cCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 003829 725 VEALDVVRYMIK----QGCKPNQNTYNSIVDGYCKLNQRYEAITFVN 767 (793)
Q Consensus 725 ~~A~~~~~~~~~----~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 767 (793)
++|+..+.++.. ..+.+-..++..|..+=.+.=...++..+.+
T Consensus 95 ~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q 141 (284)
T KOG4642|consen 95 DEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQ 141 (284)
T ss_pred cHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHH
Confidence 888888877732 2333345566666555333333444444433
No 323
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=89.45 E-value=1 Score=30.70 Aligned_cols=33 Identities=18% Similarity=0.286 Sum_probs=24.9
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHH
Q 003829 747 NSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKE 779 (793)
Q Consensus 747 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 779 (793)
-.++-++.+.|++++|..+++.+++..|++...
T Consensus 5 Y~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa 37 (53)
T PF14853_consen 5 YYLAIGHYKLGEYEKARRYCDALLEIEPDNRQA 37 (53)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHH
Confidence 355667888899999999999999998887654
No 324
>PRK11619 lytic murein transglycosylase; Provisional
Probab=89.18 E-value=42 Score=37.57 Aligned_cols=137 Identities=7% Similarity=-0.045 Sum_probs=67.2
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHH
Q 003829 394 FEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEV 473 (793)
Q Consensus 394 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 473 (793)
..+.|++..+.++...+....+ .....|..+... ......++....+++-.. .+.....-...+..+.+.+++...
T Consensus 43 a~~~g~~~~~~~~~~~l~d~pL-~~yl~y~~L~~~-l~~~~~~ev~~Fl~~~~~--~P~~~~Lr~~~l~~La~~~~w~~~ 118 (644)
T PRK11619 43 AWDNRQMDVVEQLMPTLKDYPL-YPYLEYRQLTQD-LMNQPAVQVTNFIRANPT--LPPARSLQSRFVNELARREDWRGL 118 (644)
T ss_pred HHHCCCHHHHHHHHHhccCCCc-HhHHHHHHHHhc-cccCCHHHHHHHHHHCCC--CchHHHHHHHHHHHHHHccCHHHH
Confidence 4466777777777666643211 112222222221 122245554444443211 011122222334445556666655
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 003829 474 SGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMW 540 (793)
Q Consensus 474 ~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 540 (793)
...+. ..+.+...-..+..+....|+.++|......+-..|.. ....+..++..+.+.|..
T Consensus 119 ~~~~~-----~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~-~p~~cd~l~~~~~~~g~l 179 (644)
T PRK11619 119 LAFSP-----EKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKS-LPNACDKLFSVWQQSGKQ 179 (644)
T ss_pred HHhcC-----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC-CChHHHHHHHHHHHcCCC
Confidence 55221 12334455556666777777777776666666555443 455666666666655543
No 325
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=89.07 E-value=5.3 Score=36.16 Aligned_cols=79 Identities=16% Similarity=0.155 Sum_probs=52.6
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHccCCHH
Q 003829 684 CRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQ---GCKPNQNTYNSIVDGYCKLNQRY 760 (793)
Q Consensus 684 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~ 760 (793)
.+.|+ ++|++.|-++...+.--++.....|+.-| ...+.++|+.++.++++. +-.+|+..+..|+..+.+.|+++
T Consensus 118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY-~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEGTPELETAELQYALATYY-TKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred hccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHH-HccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 34444 67777777777665544555555555444 466778888888887753 22456778888888888888888
Q ss_pred HHHH
Q 003829 761 EAIT 764 (793)
Q Consensus 761 ~A~~ 764 (793)
.|.-
T Consensus 196 ~AYi 199 (203)
T PF11207_consen 196 QAYI 199 (203)
T ss_pred hhhh
Confidence 7753
No 326
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=88.71 E-value=80 Score=40.13 Aligned_cols=323 Identities=8% Similarity=0.036 Sum_probs=150.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHH----HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 003829 390 LLSGFEKAGKDESAMKVFEEM----RSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFG 465 (793)
Q Consensus 390 li~~~~~~g~~~~a~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 465 (793)
+..+-.+.+.+..|...++.- ++. ......|..+...|...++.|...-+...... +.. ...-|....
T Consensus 1389 La~aSfrc~~y~RalmylEs~~~~ek~~--~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~s-l~~qil~~e 1460 (2382)
T KOG0890|consen 1389 LARASFRCKAYARALMYLESHRSTEKEK--ETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPS-LYQQILEHE 1460 (2382)
T ss_pred HHHHHHhhHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----Ccc-HHHHHHHHH
Confidence 344445667777777777763 211 11223344444578888887777666653111 111 222344456
Q ss_pred hCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCChHHHH
Q 003829 466 QNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTY-NAVLAALARGGMWEQSE 544 (793)
Q Consensus 466 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~ 544 (793)
..|++..|..-|+.+.+.+.. ...++.-++......|.++...-..+......-. ....+ +.=+.+-.+.++|+...
T Consensus 1461 ~~g~~~da~~Cye~~~q~~p~-~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se-~~~~~~s~~~eaaW~l~qwD~~e 1538 (2382)
T KOG0890|consen 1461 ASGNWADAAACYERLIQKDPD-KEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSE-EVDELNSLGVEAAWRLSQWDLLE 1538 (2382)
T ss_pred hhccHHHHHHHHHHhhcCCCc-cccchhhHHHhhhcccchhHHHhhhcchhhccCH-HHHHHHHHHHHHHhhhcchhhhh
Confidence 678888888888888876432 3556666666666667777666655554443211 22222 22234446777777776
Q ss_pred HHHHHHhcCCCCCCHhhHHHH--HHHHHcCCCHHH--HHHHHHHHHhHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCH
Q 003829 545 KIFAEMKGGRCKPNELTYSSL--LHAYANGREIDQ--MLALSEEIYSERAFLELKKKGFSPD-IPTLNAMISIYGRRQMV 619 (793)
Q Consensus 545 ~~~~~~~~~~~~p~~~~~~~l--~~~~~~~~~~~~--a~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~ 619 (793)
.... +. +..+|... .....+..+-|. -.+..+.+.+ .........+...+ ...|..++....-.
T Consensus 1539 ~~l~---~~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~-~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~--- 1607 (2382)
T KOG0890|consen 1539 SYLS---DR----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRE-LVIENLSACSIEGSYVRSYEILMKLHLLL--- 1607 (2382)
T ss_pred hhhh---cc----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHH-HhhhhHHHhhccchHHHHHHHHHHHHHHH---
Confidence 6654 11 12222222 222221111111 1111111110 00111111111111 12334443332211
Q ss_pred HHHHHHHHHHHhC----CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH-HCCCCCC-----HHHHHHHHHHHHHcCCH
Q 003829 620 AKTNEILHFMNDS----GFTPSLTTYNTLMYMYSRSENFARAEDVLREIL-AKGIKPD-----IISYNTVIFAYCRNGRM 689 (793)
Q Consensus 620 ~~A~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~-----~~~~~~l~~~~~~~g~~ 689 (793)
+-....+...+. ....+...|..-+..-....+..+-+--+++.. .....++ ...|........+.|++
T Consensus 1608 -el~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~ 1686 (2382)
T KOG0890|consen 1608 -ELENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHL 1686 (2382)
T ss_pred -HHHHHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccH
Confidence 111111111111 001111112111111111111111111111111 1111111 45777788888888888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003829 690 KEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQ 737 (793)
Q Consensus 690 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 737 (793)
+.|...+-++.+.+ . +..+.-.+..+-..|+-..|+.++++-++.
T Consensus 1687 q~A~nall~A~e~r-~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1687 QRAQNALLNAKESR-L--PEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred HHHHHHHHhhhhcc-c--chHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 88888888877754 2 345666677777888888888888888764
No 327
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=88.69 E-value=34 Score=35.79 Aligned_cols=96 Identities=14% Similarity=0.112 Sum_probs=44.5
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 003829 278 DSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLIS 357 (793)
Q Consensus 278 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 357 (793)
|.....+++..+.......-.+.+-.+|...| -+...|..++.+|... ..++-..+++++.+... .|++.-..|+.
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHHH
Confidence 44444455555555555555555555555543 2344455555555554 34444555555444311 12222233333
Q ss_pred HHHhcCCHHHHHHHHHHHHHc
Q 003829 358 AYARDGLLEEAMELKTQMVEI 378 (793)
Q Consensus 358 ~~~~~g~~~~A~~~~~~m~~~ 378 (793)
.|- .++.+.+...|.+...+
T Consensus 141 ~yE-kik~sk~a~~f~Ka~yr 160 (711)
T COG1747 141 KYE-KIKKSKAAEFFGKALYR 160 (711)
T ss_pred HHH-HhchhhHHHHHHHHHHH
Confidence 332 25555555555555443
No 328
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=88.68 E-value=27 Score=34.71 Aligned_cols=160 Identities=13% Similarity=0.081 Sum_probs=110.7
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc-----
Q 003829 616 RQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSR----SENFARAEDVLREILAKGIKPDIISYNTVIFAYCRN----- 686 (793)
Q Consensus 616 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----- 686 (793)
..+..+|.++|....+.| .......|...|.. ..+..+|...++++.+.|..+...+...+...|..-
T Consensus 90 ~~~~~~A~~~~~~~a~~g---~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~ 166 (292)
T COG0790 90 SRDKTKAADWYRCAAADG---LAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALA 166 (292)
T ss_pred cccHHHHHHHHHHHhhcc---cHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhc
Confidence 346888999999887766 33344446666554 458999999999999987544323344555544432
Q ss_pred C--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC---
Q 003829 687 G--RMKEASRIFSEMRDSGLVPDVITYNTFVASYAA----DSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLN--- 757 (793)
Q Consensus 687 g--~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g--- 757 (793)
- +...|..++.++.+.+ +......++..|.. ..+.++|...|++..+.|. ......+. .+...|
T Consensus 167 ~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~---~~a~~~~~-~~~~~g~g~ 239 (292)
T COG0790 167 VAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD---GAACYNLG-LMYLNGEGV 239 (292)
T ss_pred ccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHH-HHHhcCCCc
Confidence 1 3347999999999876 45556666666643 3478999999999998774 33344444 556555
Q ss_pred ------------CHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 003829 758 ------------QRYEAITFVNNLSKLDPHVTKELECKLS 785 (793)
Q Consensus 758 ------------~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 785 (793)
+...|..++..+...++.........+-
T Consensus 240 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 279 (292)
T COG0790 240 KKAAFLTAAKEEDKKQALEWLQKACELGFDNACEALRALK 279 (292)
T ss_pred hhhhhcccccCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Confidence 8889999999999998887766666433
No 329
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=88.65 E-value=32 Score=35.48 Aligned_cols=124 Identities=15% Similarity=0.026 Sum_probs=77.3
Q ss_pred HHHHhcCChHHHHHHHHHHHHc-CCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 003829 322 DVYGKCRRPKEAMQVLREMKIN-GCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKD 400 (793)
Q Consensus 322 ~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 400 (793)
.--...||+..|-+-+...+.. ...|+.+... ...+...|+++.+.+.+...... +.....+...++....+.|++
T Consensus 297 ~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~--~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~ 373 (831)
T PRK15180 297 TKQLADGDIIAASQQLFAALRNQQQDPVLIQLR--SVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARW 373 (831)
T ss_pred HHHhhccCHHHHHHHHHHHHHhCCCCchhhHHH--HHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhH
Confidence 3334567776665444444333 3334443333 33455678888888887766543 333456677788888888888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 003829 401 ESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCN 449 (793)
Q Consensus 401 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 449 (793)
++|...-+.|+...+. +..+........-..|-++++.-.|+++...+
T Consensus 374 ~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 374 REALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 8888888888766544 44444333333445567888888888876654
No 330
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=88.63 E-value=0.88 Score=29.05 Aligned_cols=29 Identities=14% Similarity=0.321 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHhhC
Q 003829 744 NTYNSIVDGYCKLNQRYEAITFVNNLSKL 772 (793)
Q Consensus 744 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 772 (793)
.+++.|+..|...|++++|..+++++++.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 46777888888888888888888877654
No 331
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=88.62 E-value=3.7 Score=41.83 Aligned_cols=126 Identities=11% Similarity=0.012 Sum_probs=84.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 003829 610 ISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRM 689 (793)
Q Consensus 610 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 689 (793)
|.--...|++..|-+-+...... .+.++.........+...|+++.+.+.+....+. +.....+...++....+.|++
T Consensus 296 i~k~~~~gd~~aas~~~~~~lr~-~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~ 373 (831)
T PRK15180 296 ITKQLADGDIIAASQQLFAALRN-QQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARW 373 (831)
T ss_pred HHHHhhccCHHHHHHHHHHHHHh-CCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhH
Confidence 33344567777765544444432 1333333333444566789999998888776654 344556777888888888999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 003829 690 KEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQG 738 (793)
Q Consensus 690 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 738 (793)
++|...-..|+...++ +..+....+......|-++++...+++....+
T Consensus 374 ~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 374 REALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 9999998888876666 55555555555566788899999999887643
No 332
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=88.51 E-value=22 Score=33.52 Aligned_cols=95 Identities=14% Similarity=0.085 Sum_probs=52.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHC-----CCCCC-------HHHHHHHHHHHHhcCChHHHHHHHHHHHH-cCCCCCHH
Q 003829 678 TVIFAYCRNGRMKEASRIFSEMRDS-----GLVPD-------VITYNTFVASYAADSLFVEALDVVRYMIK-QGCKPNQN 744 (793)
Q Consensus 678 ~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p~~~ 744 (793)
.+...|...|.+..-.++++++..+ |-. | ..+|..=|..|....+-.+-..+|++.+. +.--|.+.
T Consensus 150 KLgkl~fd~~e~~kl~KIlkqLh~SCq~edGed-D~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPl 228 (440)
T KOG1464|consen 150 KLGKLYFDRGEYTKLQKILKQLHQSCQTEDGED-DQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPL 228 (440)
T ss_pred hHhhhheeHHHHHHHHHHHHHHHHHhccccCch-hhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchH
Confidence 4555556666666666666665532 110 1 14556666667666666666666776653 12234444
Q ss_pred HHHHHHHH----HHccCCHHHHHHHHHHHhhCC
Q 003829 745 TYNSIVDG----YCKLNQRYEAITFVNNLSKLD 773 (793)
Q Consensus 745 ~~~~l~~~----~~~~g~~~~A~~~~~~~~~~~ 773 (793)
+...+-.+ ..+.|++++|-.=|-++.+..
T Consensus 229 ImGvIRECGGKMHlreg~fe~AhTDFFEAFKNY 261 (440)
T KOG1464|consen 229 IMGVIRECGGKMHLREGEFEKAHTDFFEAFKNY 261 (440)
T ss_pred HHhHHHHcCCccccccchHHHHHhHHHHHHhcc
Confidence 44333322 446677777776666666653
No 333
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=87.92 E-value=38 Score=35.45 Aligned_cols=176 Identities=15% Similarity=0.196 Sum_probs=74.4
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003829 456 TWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALA 535 (793)
Q Consensus 456 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 535 (793)
...+++..+.++....-+..+..+|..-| .+...+..++..|... ..+.-..+|+++.+..+. |...-..|...|-
T Consensus 68 ~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~~yE 143 (711)
T COG1747 68 CLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELADKYE 143 (711)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHHHHH
Confidence 33444444444444555555555555432 2344455555555544 334444555555554443 3333333333333
Q ss_pred hcCChHHHHHHHHHHhcCCCCC-----CHhhHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCCCHHHHHHHH
Q 003829 536 RGGMWEQSEKIFAEMKGGRCKP-----NELTYSSLLHAYANGREIDQMLALSEEIYSERAFLELKKKGFSPDIPTLNAMI 610 (793)
Q Consensus 536 ~~g~~~~A~~~~~~~~~~~~~p-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 610 (793)
+ ++...+..+|.++...-++- -...|..+.... ..+.+....+..++. ...|..--...+..+-
T Consensus 144 k-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiq--------t~lg~~~~~Vl~qdv~ 212 (711)
T COG1747 144 K-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQ--------TKLGEGRGSVLMQDVY 212 (711)
T ss_pred H-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHH--------HhhccchHHHHHHHHH
Confidence 3 44445555554444321110 001122222110 122233332222211 1222222333444444
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 003829 611 SIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYM 647 (793)
Q Consensus 611 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 647 (793)
.-|....++++|++++..+.+.+ ..|...-..++..
T Consensus 213 ~~Ys~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~ 248 (711)
T COG1747 213 KKYSENENWTEAIRILKHILEHD-EKDVWARKEIIEN 248 (711)
T ss_pred HHhccccCHHHHHHHHHHHhhhc-chhhhHHHHHHHH
Confidence 55666666777777776666554 3344444444443
No 334
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=87.88 E-value=48 Score=36.57 Aligned_cols=45 Identities=27% Similarity=0.175 Sum_probs=23.0
Q ss_pred hHHHHHHHHHHHHcCCCCChhHHHHHHHH-----HHhcCCHHHHHHHHHHHHH
Q 003829 330 PKEAMQVLREMKINGCLPSIVTYNSLISA-----YARDGLLEEAMELKTQMVE 377 (793)
Q Consensus 330 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~-----~~~~g~~~~A~~~~~~m~~ 377 (793)
..+|.++++...+.|. ......+..+ +....+.+.|+..|+.+.+
T Consensus 228 ~~~a~~~~~~~a~~g~---~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~ 277 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGH---SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAE 277 (552)
T ss_pred hhHHHHHHHHHHhhcc---hHHHHHHHHHHhhccccccccHHHHHHHHHHHHH
Confidence 4566666666655542 2222222222 3344566666666666655
No 335
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=87.86 E-value=38 Score=35.39 Aligned_cols=92 Identities=8% Similarity=0.029 Sum_probs=50.0
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--HcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHH
Q 003829 642 NTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYC--RNGRMKEASRIFSEMRD-SGLVPDVITYNTFVASY 718 (793)
Q Consensus 642 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~-~~~~p~~~~~~~l~~~~ 718 (793)
+.+++.+.+.|-..+|..++..+... .+++...|..++..-. ..-+...++++|+.|.. .| .|+..|-.....-
T Consensus 464 s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg--~d~~lw~~y~~~e 540 (568)
T KOG2396|consen 464 SKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG--ADSDLWMDYMKEE 540 (568)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC--CChHHHHHHHHhh
Confidence 34455555555666666666666554 3444555555543211 11125666677776665 34 3555555555555
Q ss_pred HhcCChHHHHHHHHHHHH
Q 003829 719 AADSLFVEALDVVRYMIK 736 (793)
Q Consensus 719 ~~~g~~~~A~~~~~~~~~ 736 (793)
...|..+.+-.++.++.+
T Consensus 541 ~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 541 LPLGRPENCGQIYWRAMK 558 (568)
T ss_pred ccCCCcccccHHHHHHHH
Confidence 566776666666666554
No 336
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.85 E-value=52 Score=36.98 Aligned_cols=176 Identities=14% Similarity=0.163 Sum_probs=105.8
Q ss_pred cCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 003829 327 CRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKV 406 (793)
Q Consensus 327 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 406 (793)
..++++.+.+.+.. + -.-.++|..+.+.|..+-|+...+.-.. - ...+...|+++.|++.
T Consensus 606 ~k~ydeVl~lI~ns-------~-LvGqaiIaYLqKkgypeiAL~FVkD~~t---------R---F~LaLe~gnle~ale~ 665 (1202)
T KOG0292|consen 606 NKKYDEVLHLIKNS-------N-LVGQAIIAYLQKKGYPEIALHFVKDERT---------R---FELALECGNLEVALEA 665 (1202)
T ss_pred hhhhHHHHHHHHhc-------C-cccHHHHHHHHhcCCcceeeeeecCcch---------h---eeeehhcCCHHHHHHH
Confidence 34566666555432 1 1223456666677777777665443221 1 2335567888888876
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCC
Q 003829 407 FEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFI 486 (793)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 486 (793)
-..+- |..+|..|......+|+.+-|+..|++.. .|+.|--.|.-.|+.++-.++.+....++
T Consensus 666 akkld------d~d~w~rLge~Al~qgn~~IaEm~yQ~~k---------nfekLsfLYliTgn~eKL~Km~~iae~r~-- 728 (1202)
T KOG0292|consen 666 AKKLD------DKDVWERLGEEALRQGNHQIAEMCYQRTK---------NFEKLSFLYLITGNLEKLSKMMKIAEIRN-- 728 (1202)
T ss_pred HHhcC------cHHHHHHHHHHHHHhcchHHHHHHHHHhh---------hhhheeEEEEEeCCHHHHHHHHHHHHhhh--
Confidence 55542 67889999999999999999998888754 34555556777888888777766554432
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhc
Q 003829 487 PERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKG 552 (793)
Q Consensus 487 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 552 (793)
|..+ .+.. ..-.|+.++-.++++..-. . + -.|. . -...|.-++|.++.++.-.
T Consensus 729 -D~~~--~~qn-alYl~dv~ervkIl~n~g~---~-~-layl---t-a~~~G~~~~ae~l~ee~~~ 781 (1202)
T KOG0292|consen 729 -DATG--QFQN-ALYLGDVKERVKILENGGQ---L-P-LAYL---T-AAAHGLEDQAEKLGEELEK 781 (1202)
T ss_pred -hhHH--HHHH-HHHhccHHHHHHHHHhcCc---c-c-HHHH---H-HhhcCcHHHHHHHHHhhcc
Confidence 2221 1111 1224777776666654332 2 1 1121 1 2346777888888888765
No 337
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=87.63 E-value=0.89 Score=26.51 Aligned_cols=31 Identities=26% Similarity=0.456 Sum_probs=20.6
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhCCCC
Q 003829 745 TYNSIVDGYCKLNQRYEAITFVNNLSKLDPH 775 (793)
Q Consensus 745 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 775 (793)
.|..++..+...|++++|...++++++..|+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 4556666667777777777777777666553
No 338
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.61 E-value=3.6 Score=39.59 Aligned_cols=103 Identities=16% Similarity=0.257 Sum_probs=71.1
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHH
Q 003829 598 GFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSG---FTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDII 674 (793)
Q Consensus 598 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 674 (793)
|......+...++..-....+++.+...+-++.... ..++... .+.+..+.+ -+.++++.++..=++.|+-||..
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irlllk-y~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRLLLK-YDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHHHHc-cChHHHHHHHhCcchhccccchh
Confidence 444444455555555566778888888887776531 1111111 122333333 36789999999889999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 003829 675 SYNTVIFAYCRNGRMKEASRIFSEMRDS 702 (793)
Q Consensus 675 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 702 (793)
+++.+++.+.+.+++.+|..+.-.|...
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 9999999999999999998888777754
No 339
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=87.54 E-value=12 Score=34.93 Aligned_cols=69 Identities=12% Similarity=-0.055 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHhcCCh-------HHHHHHHHHHHHcCCCC----C-HHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCC
Q 003829 709 ITYNTFVASYAADSLF-------VEALDVVRYMIKQGCKP----N-QNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHV 776 (793)
Q Consensus 709 ~~~~~l~~~~~~~g~~-------~~A~~~~~~~~~~~~~p----~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 776 (793)
..+..+++.|...|+. ..|.+.|++..+..-.| + ..+.-.++....+.|++++|..++.+++...-.+
T Consensus 119 ~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s 198 (214)
T PF09986_consen 119 GLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKAS 198 (214)
T ss_pred HHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCC
Confidence 4556666677766663 34555555555432111 1 3344456667778888888888888888775444
Q ss_pred C
Q 003829 777 T 777 (793)
Q Consensus 777 ~ 777 (793)
.
T Consensus 199 ~ 199 (214)
T PF09986_consen 199 K 199 (214)
T ss_pred C
Confidence 4
No 340
>PRK09687 putative lyase; Provisional
Probab=87.42 E-value=31 Score=33.94 Aligned_cols=136 Identities=10% Similarity=0.031 Sum_probs=62.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003829 418 NICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNG-MDSEVSGVFKEMKRAGFIPERDTFNTLI 496 (793)
Q Consensus 418 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~l~ 496 (793)
+..+-...+.++++.++ .++...+-.+.+ .++...-...+.++.+.+ ....+...+..+.. .++...-...+
T Consensus 141 ~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~ 213 (280)
T PRK09687 141 STNVRFAVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAI 213 (280)
T ss_pred CHHHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHH
Confidence 33444444444444444 334444444433 223333333344444332 12344444444442 23445555555
Q ss_pred HHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHH
Q 003829 497 SAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAY 569 (793)
Q Consensus 497 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 569 (793)
.++.+.|+ ..|...+-...+.+ + .....+.++...|.. +|...+..+.+. .+|..+-...+.++
T Consensus 214 ~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 214 IGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred HHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence 56666665 34555554444432 1 223455666666663 566666666643 33554444444433
No 341
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.37 E-value=5.7 Score=41.94 Aligned_cols=131 Identities=17% Similarity=0.198 Sum_probs=70.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003829 351 TYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHG 430 (793)
Q Consensus 351 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 430 (793)
..+.++..+-+.|..++|+++ .+|... -.....+.|+++.|.++..+.. +..-|..|.++..
T Consensus 616 ~rt~va~Fle~~g~~e~AL~~---------s~D~d~---rFelal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al 677 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQALEL---------STDPDQ---RFELALKLGRLDIAFDLAVEAN------SEVKWRQLGDAAL 677 (794)
T ss_pred hhhhHHhHhhhccchHhhhhc---------CCChhh---hhhhhhhcCcHHHHHHHHHhhc------chHHHHHHHHHHh
Confidence 344555666666666666654 222211 1233456677777776655542 4455777777777
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 003829 431 NRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMS 510 (793)
Q Consensus 431 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 510 (793)
+.|++..|.+.|..... |..|+-.+...|+.+....+-....+.|.. +...-+|...|+++++.+
T Consensus 678 ~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~------N~AF~~~~l~g~~~~C~~ 742 (794)
T KOG0276|consen 678 SAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGKN------NLAFLAYFLSGDYEECLE 742 (794)
T ss_pred hcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhccc------chHHHHHHHcCCHHHHHH
Confidence 77777777777765432 334555555555555444444444444321 122223444566666665
Q ss_pred HHHH
Q 003829 511 IYKR 514 (793)
Q Consensus 511 ~~~~ 514 (793)
++..
T Consensus 743 lLi~ 746 (794)
T KOG0276|consen 743 LLIS 746 (794)
T ss_pred HHHh
Confidence 5543
No 342
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=87.03 E-value=30 Score=33.32 Aligned_cols=69 Identities=19% Similarity=0.166 Sum_probs=43.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHH-----cCCCCCHHHH
Q 003829 676 YNTVIFAYCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSLFVEALDVVRYMIK-----QGCKPNQNTY 746 (793)
Q Consensus 676 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~~ 746 (793)
++.....|..+|.+.+|.++.++.+. +.| +...+-.|+..|...|+--.|.+.++++.+ .|+..|..++
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~lt--ldpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsie 356 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALT--LDPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIE 356 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhh--cChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHH
Confidence 34455667777777777777777776 333 445666777777777776667666666642 4555544433
No 343
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.91 E-value=5 Score=38.61 Aligned_cols=99 Identities=19% Similarity=0.178 Sum_probs=66.1
Q ss_pred cHHHHHHHhccCCChHHHHHHHHHHHhccCCCCCccchHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHH
Q 003829 135 DLLGIVKGLGFHKKTDLALDVFEWFRSCCSKDGNLVLRGSVIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSL 214 (793)
Q Consensus 135 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 214 (793)
++-..+........++.+...+..++. +.+.-. ....+.+..++.|.+. +.++++.++..=++.|+.||..+++.+
T Consensus 66 ~Vd~~V~v~~~~~~idd~~~~LyKlRh--s~~a~~-~~~~~~~~~irlllky-~pq~~i~~l~npIqYGiF~dqf~~c~l 141 (418)
T KOG4570|consen 66 TVDRLVDVISSREEIDDAEYYLYKLRH--SPNAWY-LRNWTIHTWIRLLLKY-DPQKAIYTLVNPIQYGIFPDQFTFCLL 141 (418)
T ss_pred ehhhhhhccccccchhHHHHHHHHHhc--Ccchhh-hccccHHHHHHHHHcc-ChHHHHHHHhCcchhccccchhhHHHH
Confidence 333344444445677888888888766 221111 1222344555665554 455888888888888888898999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHc
Q 003829 215 ITTYASNGRYREAVMVFKKMEEE 237 (793)
Q Consensus 215 ~~~~~~~g~~~~A~~~~~~~~~~ 237 (793)
++.+.+.+++.+|..+...|...
T Consensus 142 ~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 142 MDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHhcccHHHHHHHHHHHHHH
Confidence 99999999988888887777654
No 344
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=86.84 E-value=0.53 Score=52.57 Aligned_cols=20 Identities=10% Similarity=0.225 Sum_probs=10.9
Q ss_pred HHHHHHHHHHhhCCCCCCHH
Q 003829 760 YEAITFVNNLSKLDPHVTKE 779 (793)
Q Consensus 760 ~~A~~~~~~~~~~~~~~~~~ 779 (793)
+|-.+++++.+..+|++...
T Consensus 1132 ~E~~~L~~~yl~Enpdp~~~ 1151 (2365)
T COG5178 1132 KEEDSLLEDYLRENPDPEEA 1151 (2365)
T ss_pred chhHHHHHHHHhcCCCchhh
Confidence 34455566666666555443
No 345
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=86.69 E-value=59 Score=36.37 Aligned_cols=43 Identities=26% Similarity=0.338 Sum_probs=27.9
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 003829 284 TLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKC 327 (793)
Q Consensus 284 ~l~~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 327 (793)
.+|--|.|.|++++|.++..+.... +......+...+..|...
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASS 158 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTT
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhC
Confidence 4455677899999999988555543 344455666777777664
No 346
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=86.69 E-value=1e+02 Score=39.21 Aligned_cols=319 Identities=13% Similarity=0.097 Sum_probs=160.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHH----HHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 003829 213 SLITTYASNGRYREAVMVFKK----MEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISC 288 (793)
Q Consensus 213 ~l~~~~~~~g~~~~A~~~~~~----~~~~~~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 288 (793)
.+..+=.+++.+.+|+..++. ..+. ......|-.+...|...+ +.+....+...... +...+ .-|-.
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~--~~~e~l~fllq~lY~~i~-dpDgV~Gv~~~r~a-----~~sl~-~qil~ 1458 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEK--ETEEALYFLLQNLYGSIH-DPDGVEGVSARRFA-----DPSLY-QQILE 1458 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHHHhcC-CcchhhhHHHHhhc-----CccHH-HHHHH
Confidence 444555678888888888888 3222 112334455555788877 77776666553111 11122 22334
Q ss_pred HHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHH-HHHHHhcCCHHH
Q 003829 289 CRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSL-ISAYARDGLLEE 367 (793)
Q Consensus 289 ~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-i~~~~~~g~~~~ 367 (793)
....|++..|...|+++.+.+ ++...+++.++......|.++.+....+..... ..+....|+.+ +.+--+.++++.
T Consensus 1459 ~e~~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~ 1536 (2382)
T KOG0890|consen 1459 HEASGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDL 1536 (2382)
T ss_pred HHhhccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhh
Confidence 556688888899998888774 223667777776666777777777766655443 22233334333 333456677776
Q ss_pred HHHHHHHHHHcCCCCCHHHHHH--HHHHHHHcCCHH--HHHHHHHHHHHC--------CCCC-CHHHHHHHHHHHHhcCC
Q 003829 368 AMELKTQMVEIGITPDVFTYTT--LLSGFEKAGKDE--SAMKVFEEMRSA--------GCKP-NICTFNALIKMHGNRGN 434 (793)
Q Consensus 368 A~~~~~~m~~~g~~~~~~~~~~--li~~~~~~g~~~--~a~~~~~~~~~~--------~~~~-~~~~~~~l~~~~~~~g~ 434 (793)
....+. . . +..+|.. +...+.+..+-| .-.+.++.+.+. +..- =...|..++..+.-..-
T Consensus 1537 ~e~~l~--~-~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el 1609 (2382)
T KOG0890|consen 1537 LESYLS--D-R----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLEL 1609 (2382)
T ss_pred hhhhhh--c-c----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHH
Confidence 665544 1 1 1111211 222222211111 111122222211 1111 11334444444332211
Q ss_pred HHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHH-HHHc----CCC-CCHHHHHHHHHHHhccCCHHH
Q 003829 435 FVEMMKVFDEIN-KCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKE-MKRA----GFI-PERDTFNTLISAYSRCGSFDQ 507 (793)
Q Consensus 435 ~~~A~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-m~~~----~~~-~~~~~~~~l~~~~~~~g~~~~ 507 (793)
+...+.+.... .....-+...|..-+..-....+..+-+--+++ +... +.. --..+|....+...+.|.++.
T Consensus 1610 -~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~ 1688 (2382)
T KOG0890|consen 1610 -ENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQR 1688 (2382)
T ss_pred -HHHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHH
Confidence 11111111111 001111222232222211111112221111111 2211 111 123477888888888999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhcC
Q 003829 508 AMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGG 553 (793)
Q Consensus 508 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 553 (793)
|...+-.+.+.+ -...+......+...|+...|..++++..+.
T Consensus 1689 A~nall~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1689 AQNALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred HHHHHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 998887777765 3455666777888999999999999998754
No 347
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=86.51 E-value=4 Score=39.67 Aligned_cols=94 Identities=16% Similarity=0.083 Sum_probs=47.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 003829 610 ISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRM 689 (793)
Q Consensus 610 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 689 (793)
++-|.++|.+++|+..|....... +-|.+++..-..+|.+...+..|+.--...+..+ +.-...|..-+.+-...|+.
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhH
Confidence 455666666666666666655542 2355666555566666666665555544444321 00012233333333333455
Q ss_pred HHHHHHHHHHHHCCCCCC
Q 003829 690 KEASRIFSEMRDSGLVPD 707 (793)
Q Consensus 690 ~~A~~~~~~~~~~~~~p~ 707 (793)
.+|.+-++..++ ++|+
T Consensus 182 ~EAKkD~E~vL~--LEP~ 197 (536)
T KOG4648|consen 182 MEAKKDCETVLA--LEPK 197 (536)
T ss_pred HHHHHhHHHHHh--hCcc
Confidence 555555555555 4444
No 348
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=86.46 E-value=0.023 Score=49.59 Aligned_cols=83 Identities=14% Similarity=0.224 Sum_probs=47.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 003829 609 MISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGR 688 (793)
Q Consensus 609 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 688 (793)
++..+.+.+..+....+++.+...+...+....+.++..|++.+..++..++++.. +..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcch
Confidence 34445556667777777777776554556677777777777776666666666511 11222344555555566
Q ss_pred HHHHHHHHHH
Q 003829 689 MKEASRIFSE 698 (793)
Q Consensus 689 ~~~A~~~~~~ 698 (793)
+++|.-++.+
T Consensus 86 ~~~a~~Ly~~ 95 (143)
T PF00637_consen 86 YEEAVYLYSK 95 (143)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 6665555544
No 349
>PRK09687 putative lyase; Provisional
Probab=86.15 E-value=36 Score=33.46 Aligned_cols=219 Identities=10% Similarity=-0.016 Sum_probs=109.9
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCH----HHHHHHHHHHHHcCCCCCHHHHH
Q 003829 172 RGSVIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRY----REAVMVFKKMEEEGCKPTLITYN 247 (793)
Q Consensus 172 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----~~A~~~~~~~~~~~~~p~~~~~~ 247 (793)
+..+....+..+...|.. .+...+..+... .+...-...+.++...|+. +++...+..+... .++...-.
T Consensus 36 d~~vR~~A~~aL~~~~~~-~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~ 109 (280)
T PRK09687 36 NSLKRISSIRVLQLRGGQ-DVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRA 109 (280)
T ss_pred CHHHHHHHHHHHHhcCcc-hHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHH
Confidence 344555555666666543 333333334332 2556666666677776652 4566667666433 34555555
Q ss_pred HHHHHHHhcCCC----HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003829 248 VILNVYGKMGMP----WNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDV 323 (793)
Q Consensus 248 ~ll~~~~~~g~~----~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 323 (793)
..+.++...+.. ...+.+.+..... .++..+-...+.++.+.++ +++...+-.+.+. ++..+-...+.+
T Consensus 110 ~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~a 182 (280)
T PRK09687 110 SAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFA 182 (280)
T ss_pred HHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHH
Confidence 555555444310 1122333322222 2355555556666666665 3455555555543 344444444555
Q ss_pred HHhcC-ChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Q 003829 324 YGKCR-RPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDES 402 (793)
Q Consensus 324 ~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 402 (793)
+.+.+ +...+...+..+.. .++...-...+.++.+.|+ ..|+..+-...+.+ + .....+.++...|.. +
T Consensus 183 Lg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~ 252 (280)
T PRK09687 183 LNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK-T 252 (280)
T ss_pred HhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-h
Confidence 55442 23455555555543 2355555666666666666 45555555555443 1 123455566666663 4
Q ss_pred HHHHHHHHHHC
Q 003829 403 AMKVFEEMRSA 413 (793)
Q Consensus 403 a~~~~~~~~~~ 413 (793)
|...+..+.+.
T Consensus 253 a~p~L~~l~~~ 263 (280)
T PRK09687 253 LLPVLDTLLYK 263 (280)
T ss_pred HHHHHHHHHhh
Confidence 66666665543
No 350
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.69 E-value=11 Score=39.92 Aligned_cols=132 Identities=14% Similarity=0.090 Sum_probs=75.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003829 605 TLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYC 684 (793)
Q Consensus 605 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 684 (793)
.-+.++..+.++|-.++|+++ .+|...- .....+.|+++.|.++..+.. +..-|..|.++..
T Consensus 616 ~rt~va~Fle~~g~~e~AL~~---------s~D~d~r---Felal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al 677 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQALEL---------STDPDQR---FELALKLGRLDIAFDLAVEAN------SEVKWRQLGDAAL 677 (794)
T ss_pred hhhhHHhHhhhccchHhhhhc---------CCChhhh---hhhhhhcCcHHHHHHHHHhhc------chHHHHHHHHHHh
Confidence 345555666666766666554 2222221 123345677777777665543 4567778888888
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 003829 685 RNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAIT 764 (793)
Q Consensus 685 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 764 (793)
..|++..|.+.|.+..+ |..|+-.+...|+-+.-..+-....+.|. .|.-..+|...|+++++.+
T Consensus 678 ~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~------~N~AF~~~~l~g~~~~C~~ 742 (794)
T KOG0276|consen 678 SAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGK------NNLAFLAYFLSGDYEECLE 742 (794)
T ss_pred hcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhcc------cchHHHHHHHcCCHHHHHH
Confidence 88888888887777665 33444555556665544444444444432 1222334556677777666
Q ss_pred HHHHH
Q 003829 765 FVNNL 769 (793)
Q Consensus 765 ~~~~~ 769 (793)
++.+-
T Consensus 743 lLi~t 747 (794)
T KOG0276|consen 743 LLIST 747 (794)
T ss_pred HHHhc
Confidence 66543
No 351
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=85.51 E-value=22 Score=30.44 Aligned_cols=54 Identities=13% Similarity=0.005 Sum_probs=35.3
Q ss_pred HhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 003829 184 GKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEG 238 (793)
Q Consensus 184 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 238 (793)
...++.+++..+++.+.-..+. ....-..-+..+...|++++|..+|+++.+.+
T Consensus 21 L~~~d~~D~e~lLdALrvLrP~-~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVLRPN-LKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred HhcCCHHHHHHHHHHHHHhCCC-ccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 3477788888888777654333 22233334455677888888888888887654
No 352
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=85.45 E-value=1.5 Score=26.36 Aligned_cols=26 Identities=23% Similarity=0.290 Sum_probs=11.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003829 676 YNTVIFAYCRNGRMKEASRIFSEMRD 701 (793)
Q Consensus 676 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 701 (793)
|..+...|...|++++|.+.|++.++
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 33344444444444444444444443
No 353
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=85.41 E-value=47 Score=34.06 Aligned_cols=61 Identities=18% Similarity=0.239 Sum_probs=33.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcC
Q 003829 423 NALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAG 484 (793)
Q Consensus 423 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 484 (793)
..|+.-|...|++.+|...++++--- .-.....+.+++.+.-+.|+-...+.++++..+.|
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLgmP-fFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sg 573 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELGMP-FFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSG 573 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCCC-cchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 44556666666776666666654210 01123455566666666666555555555555544
No 354
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=85.30 E-value=6.6 Score=35.75 Aligned_cols=73 Identities=10% Similarity=0.129 Sum_probs=48.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC----HHHHHHHHH
Q 003829 676 YNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPN----QNTYNSIVD 751 (793)
Q Consensus 676 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~ 751 (793)
.+.-+..+.+.+.+++|+...++-++.+.. |...-..++..||-.|++++|...++.+-+ +.|+ ..+|..++.
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPt-da~~RhflfqLlcvaGdw~kAl~Ql~l~a~--l~p~~t~~a~lyr~lir 80 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPT-DAGGRHFLFQLLCVAGDWEKALAQLNLAAT--LSPQDTVGASLYRHLIR 80 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCc-cccchhHHHHHHhhcchHHHHHHHHHHHhh--cCcccchHHHHHHHHHH
Confidence 344556677777888888877777764322 445566777788888888888777777655 3332 455666654
No 355
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=85.19 E-value=6.6 Score=30.47 Aligned_cols=65 Identities=11% Similarity=0.029 Sum_probs=51.9
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 003829 723 LFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKELECKLSDRI 788 (793)
Q Consensus 723 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l 788 (793)
+.=++.+-++.+....+.|++.+..+-+.+|.+.+|+.-|+.+++-+..+-.. ....|..+++.+
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~-~~~~y~~~lqei 86 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA-HKEIYPYILQEI 86 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC-chhhHHHHHHHH
Confidence 34467777788888889999999999999999999999999999988855433 344777777655
No 356
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=84.94 E-value=15 Score=29.02 Aligned_cols=78 Identities=6% Similarity=0.037 Sum_probs=52.5
Q ss_pred HHHHHHHHHHhcCC--hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 003829 710 TYNTFVASYAADSL--FVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKELECKLSDR 787 (793)
Q Consensus 710 ~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 787 (793)
.|..-...|....+ .=+..+-++.+....+.|++.+..+.+.+|.+.+++.-|+.+++-+..+-.+... .|..+++.
T Consensus 10 eF~ary~~~F~~~~iD~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~-~Y~~~lqE 88 (108)
T PF02284_consen 10 EFDARYEKYFNRPDIDGWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKE-IYPYILQE 88 (108)
T ss_dssp HHHHHHHHHHH-TT--HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TT-HHHHHHHH
T ss_pred HHHHHHHHHhCCccccHHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHH-HHHHHHHH
Confidence 34444444544333 3356666777777789999999999999999999999999999998866443322 78888776
Q ss_pred H
Q 003829 788 I 788 (793)
Q Consensus 788 l 788 (793)
+
T Consensus 89 l 89 (108)
T PF02284_consen 89 L 89 (108)
T ss_dssp H
T ss_pred H
Confidence 5
No 357
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=84.31 E-value=2.6 Score=26.74 Aligned_cols=26 Identities=31% Similarity=0.433 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003829 675 SYNTVIFAYCRNGRMKEASRIFSEMR 700 (793)
Q Consensus 675 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 700 (793)
+++.+...|...|++++|..+++++.
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 34445555555555555555555544
No 358
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=84.19 E-value=12 Score=29.28 Aligned_cols=79 Identities=20% Similarity=0.236 Sum_probs=52.4
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHH
Q 003829 294 LHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKT 373 (793)
Q Consensus 294 ~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 373 (793)
..++|..+-+.+...+-. ...+--.-+..+...|+|++|..+.+.+ +.||...|.+|... +.|..+++..-+.
T Consensus 20 cHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce~--rlGl~s~l~~rl~ 92 (115)
T TIGR02508 20 CHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALCEW--RLGLGSALESRLN 92 (115)
T ss_pred HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHHHH--hhccHHHHHHHHH
Confidence 457777777777765421 1111112244567788888888888776 67888888776543 6677777777777
Q ss_pred HHHHcC
Q 003829 374 QMVEIG 379 (793)
Q Consensus 374 ~m~~~g 379 (793)
+|...|
T Consensus 93 rla~sg 98 (115)
T TIGR02508 93 RLAASG 98 (115)
T ss_pred HHHhCC
Confidence 777766
No 359
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=83.46 E-value=2.6 Score=44.12 Aligned_cols=95 Identities=12% Similarity=0.075 Sum_probs=57.5
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHH
Q 003829 684 CRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAI 763 (793)
Q Consensus 684 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 763 (793)
...|+...|.+.+..+......-..+....|+..+.+.|...+|-.++.+.+... ...+-++..++.++....+.++|+
T Consensus 618 r~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~ 696 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGAL 696 (886)
T ss_pred eecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHH
Confidence 3446667777777666652211122445566666666666667777776666543 223455566666777777777777
Q ss_pred HHHHHHhhCCCCCCHH
Q 003829 764 TFVNNLSKLDPHVTKE 779 (793)
Q Consensus 764 ~~~~~~~~~~~~~~~~ 779 (793)
+.++.+.++.|++...
T Consensus 697 ~~~~~a~~~~~~~~~~ 712 (886)
T KOG4507|consen 697 EAFRQALKLTTKCPEC 712 (886)
T ss_pred HHHHHHHhcCCCChhh
Confidence 7777777777765554
No 360
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=83.44 E-value=54 Score=33.14 Aligned_cols=119 Identities=8% Similarity=0.022 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH---cCCHHHHHHH
Q 003829 619 VAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCR---NGRMKEASRI 695 (793)
Q Consensus 619 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~ 695 (793)
.+.-+.+++++++.+ +.+...+..++..+.+..+.++..+.|+++.... +-+...|..++..... .-.+++...+
T Consensus 47 ~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~ 124 (321)
T PF08424_consen 47 AERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDV 124 (321)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHH
Confidence 455677888888875 5778888888999999999999999999999862 3367788888776544 2357777777
Q ss_pred HHHHHHC------CC------CCC--H---HHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 003829 696 FSEMRDS------GL------VPD--V---ITYNTFVASYAADSLFVEALDVVRYMIKQGC 739 (793)
Q Consensus 696 ~~~~~~~------~~------~p~--~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 739 (793)
|.++++. +. .++ . .++..+...+.++|..+.|+.+++-+++.++
T Consensus 125 y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 125 YEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 7777641 21 011 1 2344555566688999999999999998765
No 361
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=83.29 E-value=11 Score=34.27 Aligned_cols=71 Identities=23% Similarity=0.097 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc---CCCCChhHHHHHHHHHHhcCCHHHH
Q 003829 297 EAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKIN---GCLPSIVTYNSLISAYARDGLLEEA 368 (793)
Q Consensus 297 ~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~A 368 (793)
.|.+.|-.+...+.--+......|...|. ..|.+++..++-...+. +..+|+..+..|+..+.+.|+++.|
T Consensus 124 ~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 124 EALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 34444444444333223333333333332 33444444444444332 1133444444555555555544444
No 362
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.05 E-value=40 Score=31.39 Aligned_cols=15 Identities=20% Similarity=0.262 Sum_probs=9.8
Q ss_pred CCChHHHHHHHHHHH
Q 003829 146 HKKTDLALDVFEWFR 160 (793)
Q Consensus 146 ~~~~~~A~~~~~~~~ 160 (793)
.+++++|.++|....
T Consensus 27 ~~k~eeAadl~~~Aa 41 (288)
T KOG1586|consen 27 SNKYEEAAELYERAA 41 (288)
T ss_pred CcchHHHHHHHHHHH
Confidence 346777777776654
No 363
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=82.09 E-value=29 Score=32.37 Aligned_cols=118 Identities=8% Similarity=0.002 Sum_probs=77.9
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCH
Q 003829 612 IYGRRQMVAKTNEILHFMNDSGFTPSLTT-YNTLMYMYSRSENFARAEDVLREILAKGIKPDII-SYNTVIFAYCRNGRM 689 (793)
Q Consensus 612 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~ 689 (793)
.|.....++.|...|.+.+.. .|++.+ |..=+.++.+..+++.+..--.+.++ +.||.+ ....+..+......+
T Consensus 19 k~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~ 94 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGY 94 (284)
T ss_pred cccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccc
Confidence 366677899999988887765 577655 45556677888899998888777777 466644 455666777888899
Q ss_pred HHHHHHHHHHHH----CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 003829 690 KEASRIFSEMRD----SGLVPDVITYNTFVASYAADSLFVEALDVVRY 733 (793)
Q Consensus 690 ~~A~~~~~~~~~----~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 733 (793)
++|...++++.. +.+.+-......|..+-...=...++.++.++
T Consensus 95 ~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~ 142 (284)
T KOG4642|consen 95 DEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQE 142 (284)
T ss_pred cHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHH
Confidence 999999999854 23333334445554433322233344444444
No 364
>PRK10941 hypothetical protein; Provisional
Probab=81.73 E-value=15 Score=35.64 Aligned_cols=76 Identities=13% Similarity=0.071 Sum_probs=51.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHH-HHHHHHHH
Q 003829 711 YNTFVASYAADSLFVEALDVVRYMIKQGCKPN-QNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKEL-ECKLSDRI 788 (793)
Q Consensus 711 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~l 788 (793)
.+.+-.+|.+.++++.|+...+.++. +.|+ +.-+.--+-.|.+.|.+..|..=++..++..|+++... ....+..+
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~--l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l 261 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQ--FDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSI 261 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Confidence 35566677777888888888888776 3454 55566666677788888888887888777777765543 33444444
No 365
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=81.52 E-value=12 Score=34.16 Aligned_cols=124 Identities=12% Similarity=0.136 Sum_probs=78.5
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHH
Q 003829 640 TYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPD----VITYNTFV 715 (793)
Q Consensus 640 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~ 715 (793)
+.+..++.+.+.+.+++|+...++=++.+ +-|...-..++..||-.|+|++|..-++-+-+ +.|+ ...|..++
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~--l~p~~t~~a~lyr~li 79 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAAT--LSPQDTVGASLYRHLI 79 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhh--cCcccchHHHHHHHHH
Confidence 34556777888999999999999888763 33566777888999999999999999998887 4443 35566655
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCC-----HHHHH-HHHHH-HHccCCHHH-HHHHHHHHhhCCCCC
Q 003829 716 ASYAADSLFVEALDVVRYMIKQGCKPN-----QNTYN-SIVDG-YCKLNQRYE-AITFVNNLSKLDPHV 776 (793)
Q Consensus 716 ~~~~~~g~~~~A~~~~~~~~~~~~~p~-----~~~~~-~l~~~-~~~~g~~~~-A~~~~~~~~~~~~~~ 776 (793)
.+- .+-++..+-+..|. ...|. .|..+ -++.+..-+ +..+-+.+++..|.+
T Consensus 80 r~e----------a~R~evfag~~~Pgflg~p~p~wva~L~aala~h~dg~gea~~alreqal~aa~~~ 138 (273)
T COG4455 80 RCE----------AARNEVFAGGAVPGFLGGPSPEWVAALLAALALHSDGAGEARTALREQALKAAPVP 138 (273)
T ss_pred HHH----------HHHHHHhccCCCCCCcCCCCHHHHHHHHHHHhcccCCcchHHHHHHHHHHhhCCCC
Confidence 432 22233333333332 23343 23333 234443444 455556677777765
No 366
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=81.47 E-value=2 Score=43.99 Aligned_cols=98 Identities=18% Similarity=0.125 Sum_probs=48.4
Q ss_pred HHccCCHHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChH
Q 003829 648 YSRSENFARAEDVLREILAKGIKPDIISYNT-VIFAYCRNGRMKEASRIFSEMRDSGLVPDV-ITYNTFVASYAADSLFV 725 (793)
Q Consensus 648 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~ 725 (793)
+...++++.|..++.++++. .||...|.. -..++.+.+++..|+.=+.++++ ..|+. ..|..-+.++.+.+++.
T Consensus 14 ~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie--~dP~~~K~Y~rrg~a~m~l~~~~ 89 (476)
T KOG0376|consen 14 ALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIE--LDPTYIKAYVRRGTAVMALGEFK 89 (476)
T ss_pred hcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhh--cCchhhheeeeccHHHHhHHHHH
Confidence 34445566666666666653 444333322 22455555666666655555555 23322 34444444555555555
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003829 726 EALDVVRYMIKQGCKPNQNTYNSIVD 751 (793)
Q Consensus 726 ~A~~~~~~~~~~~~~p~~~~~~~l~~ 751 (793)
+|+..|+.... +.|+..-....+.
T Consensus 90 ~A~~~l~~~~~--l~Pnd~~~~r~~~ 113 (476)
T KOG0376|consen 90 KALLDLEKVKK--LAPNDPDATRKID 113 (476)
T ss_pred HHHHHHHHhhh--cCcCcHHHHHHHH
Confidence 55555555544 4454333333333
No 367
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=81.39 E-value=23 Score=34.69 Aligned_cols=125 Identities=12% Similarity=0.093 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH------HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 003829 654 FARAEDVLREILAKGIKPDIISYNTVIFAYC------RNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEA 727 (793)
Q Consensus 654 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~------~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 727 (793)
++++..++++....+ .|........|.++- ..-+|.....+|+-+.. +.|++++-.+-..+..+..-.+.+
T Consensus 272 I~eg~all~rA~~~~-~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~--~apSPvV~LNRAVAla~~~Gp~ag 348 (415)
T COG4941 272 IDEGLALLDRALASR-RPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQ--AAPSPVVTLNRAVALAMREGPAAG 348 (415)
T ss_pred HHHHHHHHHHHHHcC-CCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHH--hCCCCeEeehHHHHHHHhhhHHhH
Confidence 567777777777665 366666666555442 22368888888888887 555553333333445555556777
Q ss_pred HHHHHHHHHcC-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHH
Q 003829 728 LDVVRYMIKQG-CKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKELE 781 (793)
Q Consensus 728 ~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 781 (793)
+...+-+.+.+ +.--...+..-+..+.+.|+.++|...|++++.+..++.+..+
T Consensus 349 La~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~ 403 (415)
T COG4941 349 LAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAF 403 (415)
T ss_pred HHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHH
Confidence 88888777542 2211233345566788999999999999999999887666544
No 368
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=81.14 E-value=58 Score=31.98 Aligned_cols=99 Identities=16% Similarity=0.194 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----CCCCCCHHHH-HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH----
Q 003829 673 IISYNTVIFAYCRNGRMKEASRIFSEMRD----SGLVPDVITY-NTFVASYAADSLFVEALDVVRYMIKQGCKPNQ---- 743 (793)
Q Consensus 673 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~---- 743 (793)
...+.....-||+-|+.+.|.+.+.+..+ .|.+.|...+ ..++-.|....-..+-++..+.++++|..-+.
T Consensus 104 ~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRl 183 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRL 183 (393)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhH
Confidence 34566777889999999999999887765 4667676544 34444555555577788888888888876653
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHhhCC
Q 003829 744 NTYNSIVDGYCKLNQRYEAITFVNNLSKLD 773 (793)
Q Consensus 744 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 773 (793)
.+|..+- +....++.+|..++-+.+..-
T Consensus 184 KvY~Gly--~msvR~Fk~Aa~Lfld~vsTF 211 (393)
T KOG0687|consen 184 KVYQGLY--CMSVRNFKEAADLFLDSVSTF 211 (393)
T ss_pred HHHHHHH--HHHHHhHHHHHHHHHHHcccc
Confidence 3333322 345578999999988877664
No 369
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=80.12 E-value=1e+02 Score=34.08 Aligned_cols=14 Identities=0% Similarity=-0.040 Sum_probs=7.6
Q ss_pred hHHHHHHHHHHHHc
Q 003829 470 DSEVSGVFKEMKRA 483 (793)
Q Consensus 470 ~~~a~~~~~~m~~~ 483 (793)
...|.++++...+.
T Consensus 525 ~~~a~~~~~~~~~~ 538 (552)
T KOG1550|consen 525 LHLAKRYYDQASEE 538 (552)
T ss_pred hHHHHHHHHHHHhc
Confidence 45555555555544
No 370
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=79.90 E-value=56 Score=31.01 Aligned_cols=228 Identities=16% Similarity=0.191 Sum_probs=112.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHhcC---C--CCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCCCHH
Q 003829 530 VLAALARGGMWEQSEKIFAEMKGG---R--CKPNELTYSSLLHAYANGREIDQMLALSEEIYSERAFLELKKKGFSPDIP 604 (793)
Q Consensus 530 l~~~~~~~g~~~~A~~~~~~~~~~---~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 604 (793)
++....+.|++++....+.+++.- . -.-+..+.+.+++-...+.+.+....+|+.-+. ++.+.+...+ --.
T Consensus 71 miKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~--ALkdAKNeRL--WFK 146 (440)
T KOG1464|consen 71 MIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLD--ALKDAKNERL--WFK 146 (440)
T ss_pred HHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--HHHhhhccee--eee
Confidence 344445555555555555544310 0 012344455555555555555555555543221 1111111110 111
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCC----C-------CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC-CCCCC
Q 003829 605 TLNAMISIYGRRQMVAKTNEILHFMNDSGF----T-------PSLTTYNTLMYMYSRSENFARAEDVLREILAK-GIKPD 672 (793)
Q Consensus 605 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~-------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~ 672 (793)
+-..|...|...+.+.+..+++.++.+... . .=..+|..-+.+|....+-.+-..++++.+.. ..-|.
T Consensus 147 TNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPH 226 (440)
T KOG1464|consen 147 TNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPH 226 (440)
T ss_pred ccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCc
Confidence 334566667777777777777777764311 1 11345666777787777777777788876632 12345
Q ss_pred HHHHHHHH----HHHHHcCCHHHHHHHHHHHHH----CCCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHHcCC--
Q 003829 673 IISYNTVI----FAYCRNGRMKEASRIFSEMRD----SGLVPDV---ITYNTFVASYAADSLFVEALDVVRYMIKQGC-- 739 (793)
Q Consensus 673 ~~~~~~l~----~~~~~~g~~~~A~~~~~~~~~----~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-- 739 (793)
+.....+- ....+.|++++|..-|-++.+ +| .|.. .-|..|+..+.++|-- -|..-..+.+
T Consensus 227 PlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsG-spRRttCLKYLVLANMLmkS~iN-----PFDsQEAKPyKN 300 (440)
T KOG1464|consen 227 PLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESG-SPRRTTCLKYLVLANMLMKSGIN-----PFDSQEAKPYKN 300 (440)
T ss_pred hHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccC-CcchhHHHHHHHHHHHHHHcCCC-----CCcccccCCCCC
Confidence 44443332 223566888888765555543 23 2322 3356666667666531 0111111112
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 003829 740 KPNQNTYNSIVDGYCKLNQRYEAITFVNN 768 (793)
Q Consensus 740 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 768 (793)
.|.......++.+| +.++..+...+++.
T Consensus 301 dPEIlAMTnlv~aY-Q~NdI~eFE~Il~~ 328 (440)
T KOG1464|consen 301 DPEILAMTNLVAAY-QNNDIIEFERILKS 328 (440)
T ss_pred CHHHHHHHHHHHHH-hcccHHHHHHHHHh
Confidence 33344556777766 34455444444443
No 371
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=79.84 E-value=3.1 Score=24.64 Aligned_cols=24 Identities=21% Similarity=0.299 Sum_probs=11.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHH
Q 003829 713 TFVASYAADSLFVEALDVVRYMIK 736 (793)
Q Consensus 713 ~l~~~~~~~g~~~~A~~~~~~~~~ 736 (793)
.++.++.+.|++++|++.++++++
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHH
Confidence 344444444555555555554443
No 372
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=79.80 E-value=4.8 Score=29.90 Aligned_cols=47 Identities=11% Similarity=0.106 Sum_probs=24.6
Q ss_pred hcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHccCCHHHHHHHH
Q 003829 720 ADSLFVEALDVVRYMIKQGCKPN--QNTYNSIVDGYCKLNQRYEAITFV 766 (793)
Q Consensus 720 ~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~ 766 (793)
...+.++|+..+++.+++-..+. ..++..++.+|+.-|++.+++.+.
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666666655322221 334455555666666666555443
No 373
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=79.80 E-value=60 Score=31.25 Aligned_cols=100 Identities=16% Similarity=0.169 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----CCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHH
Q 003829 673 IISYNTVIFAYCRNGRMKEASRIFSEMRD----SGLVPDVI-TYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQ-NTY 746 (793)
Q Consensus 673 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~ 746 (793)
...+..+..-|++.++.+.+.+++.+..+ .|.+.|.. +-..|+-.|....-.++-++..+.|+++|..-+. .-|
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRy 194 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRY 194 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhH
Confidence 34556666666777776666666655543 24444432 2223333444444456666666666666654431 111
Q ss_pred HHHHH-HHHccCCHHHHHHHHHHHhhC
Q 003829 747 NSIVD-GYCKLNQRYEAITFVNNLSKL 772 (793)
Q Consensus 747 ~~l~~-~~~~~g~~~~A~~~~~~~~~~ 772 (793)
...-. .+....++.+|..++-..+..
T Consensus 195 K~Y~Gi~~m~~RnFkeAa~Ll~d~l~t 221 (412)
T COG5187 195 KVYKGIFKMMRRNFKEAAILLSDILPT 221 (412)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhcc
Confidence 11111 122334566666666665544
No 374
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=79.14 E-value=81 Score=32.41 Aligned_cols=95 Identities=18% Similarity=0.147 Sum_probs=67.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCChHHHHHHHHHHHHc---C---CCCCHHHHHHHHH
Q 003829 679 VIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYA-ADSLFVEALDVVRYMIKQ---G---CKPNQNTYNSIVD 751 (793)
Q Consensus 679 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~---~---~~p~~~~~~~l~~ 751 (793)
.+..+.+.|-+..|.++.+-+...+..-|+.....+|..|+ +.++++--+++++..... . .-|+ ..| +++-
T Consensus 109 ~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn-~a~-S~aL 186 (360)
T PF04910_consen 109 YIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPN-FAF-SIAL 186 (360)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCcc-HHH-HHHH
Confidence 35677899999999999999999555446666667777666 777888888888886542 1 1233 222 3334
Q ss_pred HHHccCCH---------------HHHHHHHHHHhhCCCC
Q 003829 752 GYCKLNQR---------------YEAITFVNNLSKLDPH 775 (793)
Q Consensus 752 ~~~~~g~~---------------~~A~~~~~~~~~~~~~ 775 (793)
++...++. ++|...+++++..-|.
T Consensus 187 A~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 187 AYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred HHHHhcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence 55566666 8999999999888775
No 375
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=78.62 E-value=25 Score=38.38 Aligned_cols=182 Identities=16% Similarity=0.227 Sum_probs=106.1
Q ss_pred HHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH----------HHHHHHHHHccCCHHHHH
Q 003829 592 LELKKKGFSPD---IPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTT----------YNTLMYMYSRSENFARAE 658 (793)
Q Consensus 592 ~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----------~~~l~~~~~~~g~~~~A~ 658 (793)
.+|...--.|+ ..+...++-.|....+++...++.+.+... ||..- |...++---+-|+-++|+
T Consensus 187 ~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL 263 (1226)
T KOG4279|consen 187 DKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRPGDRAKAL 263 (1226)
T ss_pred HHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCCccHHHHH
Confidence 34444444454 345566666788888899999999888764 33221 222222234568899999
Q ss_pred HHHHHHHHCC--CCCCHH-----HHHHH--HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-hHHHH
Q 003829 659 DVLREILAKG--IKPDII-----SYNTV--IFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSL-FVEAL 728 (793)
Q Consensus 659 ~~~~~~~~~~--~~~~~~-----~~~~l--~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-~~~A~ 728 (793)
.+.-.+.++. +.||.. .|.-+ ...|...+..+.|.++|+++.+ ..|....=-.+...+...|. ++...
T Consensus 264 ~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~aaG~~Fens~ 341 (1226)
T KOG4279|consen 264 NTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRAAGEHFENSL 341 (1226)
T ss_pred HHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHHhhhhccchH
Confidence 9888887653 455532 22211 1334455677889999999988 66755333333333444443 33322
Q ss_pred HH------HHHHH-HcCCCCCHHHHHHH---HHHHHccCCHHHHHHHHHHHhhCCCCCCH
Q 003829 729 DV------VRYMI-KQGCKPNQNTYNSI---VDGYCKLNQRYEAITFVNNLSKLDPHVTK 778 (793)
Q Consensus 729 ~~------~~~~~-~~~~~p~~~~~~~l---~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 778 (793)
++ +..++ ++|.--....|--+ ..+-.-++++.+|+...+.|.++.|..-.
T Consensus 342 Elq~IgmkLn~LlgrKG~leklq~YWdV~~y~~asVLAnd~~kaiqAae~mfKLk~P~WY 401 (1226)
T KOG4279|consen 342 ELQQIGMKLNSLLGRKGALEKLQEYWDVATYFEASVLANDYQKAIQAAEMMFKLKPPVWY 401 (1226)
T ss_pred HHHHHHHHHHHHhhccchHHHHHHHHhHHHhhhhhhhccCHHHHHHHHHHHhccCCceeh
Confidence 22 22222 23432222223222 23344678999999999999999987654
No 376
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=78.48 E-value=2.9 Score=23.40 Aligned_cols=21 Identities=10% Similarity=0.042 Sum_probs=11.9
Q ss_pred HHHHHHHHccCCHHHHHHHHH
Q 003829 747 NSIVDGYCKLNQRYEAITFVN 767 (793)
Q Consensus 747 ~~l~~~~~~~g~~~~A~~~~~ 767 (793)
..++..+...|+.++|..+++
T Consensus 5 ~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHHh
Confidence 345555666666666655554
No 377
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=78.33 E-value=1.2e+02 Score=33.96 Aligned_cols=88 Identities=15% Similarity=0.044 Sum_probs=37.0
Q ss_pred HHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCChhHHHHHHHHHHh---c
Q 003829 287 SCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKING-CLPSIVTYNSLISAYAR---D 362 (793)
Q Consensus 287 ~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~---~ 362 (793)
..+.-.|++|.|.+++-+ ..+...+.+.+...+.-| |-+.-....-..+.... ..+....+..||..|++ .
T Consensus 266 ~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~---gLL~~~~~~~~~lls~~~~~~~~ln~arLI~~Y~~~F~~ 340 (613)
T PF04097_consen 266 QVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYY---GLLRVSDSSSAPLLSVDPGDPPPLNFARLIGQYTRSFEI 340 (613)
T ss_dssp HHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHT---T------------------------HHHHHHHHHHTTTT
T ss_pred HHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHc---CCCCCCCccccceeeecCCCCCCcCHHHHHHHHHHHHhc
Confidence 344556888888888766 112233444443333332 22211111112222211 11112557778888776 3
Q ss_pred CCHHHHHHHHHHHHHcC
Q 003829 363 GLLEEAMELKTQMVEIG 379 (793)
Q Consensus 363 g~~~~A~~~~~~m~~~g 379 (793)
.+..+|.+.+-.+....
T Consensus 341 td~~~Al~Y~~li~~~~ 357 (613)
T PF04097_consen 341 TDPREALQYLYLICLFK 357 (613)
T ss_dssp T-HHHHHHHHHGGGGS-
T ss_pred cCHHHHHHHHHHHHHcC
Confidence 67788888887766543
No 378
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.32 E-value=1.4e+02 Score=34.56 Aligned_cols=61 Identities=20% Similarity=0.126 Sum_probs=35.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHH-HHHHHH---HHHHcCCHHHHHHHHHHHHH
Q 003829 176 IAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYA-YTSLIT---TYASNGRYREAVMVFKKMEE 236 (793)
Q Consensus 176 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~---~~~~~g~~~~A~~~~~~~~~ 236 (793)
+..-+..+....+|++|..+.+.....++.-...+ +..... -+..+|++++|...|.++..
T Consensus 310 ~~~qi~~lL~~k~fe~ai~L~e~~~~~~p~~~~~i~~~~~l~~a~~lf~q~~f~ea~~~F~~~~~ 374 (877)
T KOG2063|consen 310 FEKQIQDLLQEKSFEEAISLAEILDSPNPKEKRQISCIKILIDAFELFLQKQFEEAMSLFEKSEI 374 (877)
T ss_pred hHHHHHHHHHhhhHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcc
Confidence 55556666666778888877776554322211111 111222 24567889999999988864
No 379
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=78.08 E-value=81 Score=31.85 Aligned_cols=119 Identities=8% Similarity=0.016 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCChHHHHHH
Q 003829 654 FARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAA---DSLFVEALDV 730 (793)
Q Consensus 654 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~A~~~ 730 (793)
.+.-+.+++++++.+ +.+...+..++..+.+..+.++..+-+++++..... +...|..++..... .-.+++...+
T Consensus 47 ~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~-~~~LW~~yL~~~q~~~~~f~v~~~~~~ 124 (321)
T PF08424_consen 47 AERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPG-SPELWREYLDFRQSNFASFTVSDVRDV 124 (321)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHhccCcHHHHHHH
Confidence 466788999988873 456778888999999999999999999999984322 55677777765554 2346677777
Q ss_pred HHHHHH------cCC------CCC-----HHHHHHHHHHHHccCCHHHHHHHHHHHhhCCC
Q 003829 731 VRYMIK------QGC------KPN-----QNTYNSIVDGYCKLNQRYEAITFVNNLSKLDP 774 (793)
Q Consensus 731 ~~~~~~------~~~------~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 774 (793)
|.+.++ .+. .++ ..++..+...+...|-.+.|+.+++-+++.+.
T Consensus 125 y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 125 YEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 776653 111 011 13344455567799999999999999999965
No 380
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=78.00 E-value=8.7 Score=40.44 Aligned_cols=133 Identities=15% Similarity=0.105 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003829 619 VAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSE 698 (793)
Q Consensus 619 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 698 (793)
.+.+-.++..|... ..|-..+.|...-.+...|+...|...+..+.........+..-.|.....+.|...+|..++.+
T Consensus 589 ~e~~~~~~~~~~~~-~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q 667 (886)
T KOG4507|consen 589 EEIGSFLFHAINKP-NAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQ 667 (886)
T ss_pred HHHHHHHHHHhcCC-CCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHH
Confidence 34445555555443 34444445544444566899999999998887642222334556677777788888999999998
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003829 699 MRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYC 754 (793)
Q Consensus 699 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 754 (793)
.+.-. ...+.++..++++|....+.++|++.++++.++. ..+.++-+.|...-|
T Consensus 668 ~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~-~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 668 ALAIN-SSEPLTFLSLGNAYLALKNISGALEAFRQALKLT-TKCPECENSLKLIRC 721 (886)
T ss_pred HHhhc-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcC-CCChhhHHHHHHHHH
Confidence 88754 3355778899999999999999999999998752 224555555554443
No 381
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=77.80 E-value=4 Score=37.38 Aligned_cols=58 Identities=14% Similarity=0.082 Sum_probs=35.9
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCC
Q 003829 718 YAADSLFVEALDVVRYMIKQGCKPN-QNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVT 777 (793)
Q Consensus 718 ~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 777 (793)
..+.|+.+.|.+++.++++ +.|+ ...|..++..-.+.|+++.|...|++.++.+|++.
T Consensus 5 ~~~~~D~~aaaely~qal~--lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 5 LAESGDAEAAAELYNQALE--LAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred hcccCChHHHHHHHHHHhh--cCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 3455666666666666665 3343 55666666666666666666666666666666543
No 382
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=77.30 E-value=22 Score=34.83 Aligned_cols=89 Identities=19% Similarity=0.214 Sum_probs=40.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCC-CC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcc
Q 003829 681 FAYCRNGRMKEASRIFSEMRDSGL-VP--DVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPN-QNTYNSIVDGYCKL 756 (793)
Q Consensus 681 ~~~~~~g~~~~A~~~~~~~~~~~~-~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~ 756 (793)
+-|.+..++..|...|.+-++... .| +.+.|+.-+.+-...|++..|+.=...+++ +.|+ ...|..=+.++...
T Consensus 89 N~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~--~~P~h~Ka~~R~Akc~~eL 166 (390)
T KOG0551|consen 89 NEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALK--LKPTHLKAYIRGAKCLLEL 166 (390)
T ss_pred HHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh--cCcchhhhhhhhhHHHHHH
Confidence 344455555555555555444211 12 224444444444445555555555554444 2333 33333334444455
Q ss_pred CCHHHHHHHHHHHhh
Q 003829 757 NQRYEAITFVNNLSK 771 (793)
Q Consensus 757 g~~~~A~~~~~~~~~ 771 (793)
.++++|..+.++.++
T Consensus 167 e~~~~a~nw~ee~~~ 181 (390)
T KOG0551|consen 167 ERFAEAVNWCEEGLQ 181 (390)
T ss_pred HHHHHHHHHHhhhhh
Confidence 555555555544433
No 383
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=77.24 E-value=39 Score=31.66 Aligned_cols=68 Identities=13% Similarity=0.191 Sum_probs=37.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHH
Q 003829 712 NTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKEL 780 (793)
Q Consensus 712 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 780 (793)
..+..++...|++-++++...+.+.. .+-+...|-.-+.+....=+.++|..=+.++++++|.-...+
T Consensus 234 lNy~QC~L~~~e~yevleh~seiL~~-~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvV 301 (329)
T KOG0545|consen 234 LNYCQCLLKKEEYYEVLEHCSEILRH-HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVV 301 (329)
T ss_pred HhHHHHHhhHHHHHHHHHHHHHHHhc-CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHH
Confidence 33444455556666666666666553 122355555555555555566666666666666666544433
No 384
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=77.07 E-value=1e+02 Score=32.44 Aligned_cols=100 Identities=7% Similarity=0.079 Sum_probs=72.1
Q ss_pred CCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--hcCChHHHHHHHHHHHH-cCCCCCHHH
Q 003829 670 KPDIISY-NTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYA--ADSLFVEALDVVRYMIK-QGCKPNQNT 745 (793)
Q Consensus 670 ~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~-~~~~p~~~~ 745 (793)
.++..++ +.++..+.+.|-..+|.+.+..+... ..|+...|..++..-. .+.+...+.++|+.|.. .| .|+..
T Consensus 456 ~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg--~d~~l 532 (568)
T KOG2396|consen 456 GADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG--ADSDL 532 (568)
T ss_pred CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC--CChHH
Confidence 4555444 56777788888999999999998883 3335577777776432 23347888999999874 45 57788
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHhhC
Q 003829 746 YNSIVDGYCKLNQRYEAITFVNNLSKL 772 (793)
Q Consensus 746 ~~~l~~~~~~~g~~~~A~~~~~~~~~~ 772 (793)
|......=...|..+.+-.++.++.+.
T Consensus 533 w~~y~~~e~~~g~~en~~~~~~ra~kt 559 (568)
T KOG2396|consen 533 WMDYMKEELPLGRPENCGQIYWRAMKT 559 (568)
T ss_pred HHHHHHhhccCCCcccccHHHHHHHHh
Confidence 877666666889988888888777765
No 385
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=76.81 E-value=19 Score=29.63 Aligned_cols=58 Identities=16% Similarity=0.270 Sum_probs=37.5
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003829 692 ASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIV 750 (793)
Q Consensus 692 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 750 (793)
..+.++.+...++.|++.+...-++++.+.+++..|+++++-.+.+ +.+....|-.++
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K-~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK-CGAQKQVYPYYV 125 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh-cccHHHHHHHHH
Confidence 3455666666677777777777777777777777777777776643 333333454444
No 386
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=75.91 E-value=6.1 Score=25.71 Aligned_cols=22 Identities=23% Similarity=0.224 Sum_probs=11.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHH
Q 003829 320 LLDVYGKCRRPKEAMQVLREMK 341 (793)
Q Consensus 320 li~~~~~~g~~~~A~~~~~~~~ 341 (793)
|..+|.+.|+.+.|.++++++.
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHH
Confidence 3444555555555555555544
No 387
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=75.76 E-value=7.9 Score=28.82 Aligned_cols=47 Identities=6% Similarity=0.012 Sum_probs=25.4
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCChHHHHHHH
Q 003829 685 RNGRMKEASRIFSEMRDSGLVPDV--ITYNTFVASYAADSLFVEALDVV 731 (793)
Q Consensus 685 ~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~ 731 (793)
...+.++|+..+..+++.-..+.. .++..++.+|+..|++.+++++.
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666653222211 44556666666666666655543
No 388
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=75.00 E-value=83 Score=30.36 Aligned_cols=18 Identities=11% Similarity=0.047 Sum_probs=8.2
Q ss_pred HHHcCCHHHHHHHHHHHH
Q 003829 683 YCRNGRMKEASRIFSEMR 700 (793)
Q Consensus 683 ~~~~g~~~~A~~~~~~~~ 700 (793)
|.+.|....+.++-..-+
T Consensus 128 ysKv~Ep~amlev~~~WL 145 (309)
T PF07163_consen 128 YSKVQEPAAMLEVASAWL 145 (309)
T ss_pred HHHhcCHHHHHHHHHHHH
Confidence 444444444444444444
No 389
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=74.73 E-value=72 Score=29.87 Aligned_cols=88 Identities=15% Similarity=0.095 Sum_probs=50.6
Q ss_pred cCCHHHHHHHHHHHHH----CCCCCC--HHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHCCCCC-----CHHHHH
Q 003829 651 SENFARAEDVLREILA----KGIKPD--IISYNTVIFAYCRNGRM-------KEASRIFSEMRDSGLVP-----DVITYN 712 (793)
Q Consensus 651 ~g~~~~A~~~~~~~~~----~~~~~~--~~~~~~l~~~~~~~g~~-------~~A~~~~~~~~~~~~~p-----~~~~~~ 712 (793)
...+++|++.+..++- .+.++. ...+.-+.+.|...|+- ..|.+.|.+..+..-.| +.....
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~Y 169 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLY 169 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHH
Confidence 3455555555544431 122333 23445556666666663 44555566655532221 224555
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcC
Q 003829 713 TFVASYAADSLFVEALDVVRYMIKQG 738 (793)
Q Consensus 713 ~l~~~~~~~g~~~~A~~~~~~~~~~~ 738 (793)
.++....+.|++++|.+.|.+++..+
T Consensus 170 LigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 170 LIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 67777888899999999999988643
No 390
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=74.55 E-value=1.4 Score=38.29 Aligned_cols=85 Identities=6% Similarity=0.079 Sum_probs=56.2
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 003829 644 LMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSL 723 (793)
Q Consensus 644 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 723 (793)
++..+.+.+.++....+++.+...+...+....+.++..|++.++.++..++++.... .-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~-------yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN-------YDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS-------S-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc-------cCHHHHHHHHHhcch
Confidence 4566666777777888888888665455677778888888888777777777762111 122456666777777
Q ss_pred hHHHHHHHHHHH
Q 003829 724 FVEALDVVRYMI 735 (793)
Q Consensus 724 ~~~A~~~~~~~~ 735 (793)
+++|.-++.++-
T Consensus 86 ~~~a~~Ly~~~~ 97 (143)
T PF00637_consen 86 YEEAVYLYSKLG 97 (143)
T ss_dssp HHHHHHHHHCCT
T ss_pred HHHHHHHHHHcc
Confidence 878877777653
No 391
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=73.58 E-value=89 Score=30.09 Aligned_cols=49 Identities=18% Similarity=0.150 Sum_probs=28.6
Q ss_pred HHHhcCChHHHHHHHHHHhhCCCCCCH-------HHHHHHHHHHHHcCCHHHHHHH
Q 003829 182 MLGKEGKVSVAASLLHGLHKDGFDIDV-------YAYTSLITTYASNGRYREAVMV 230 (793)
Q Consensus 182 ~~~~~~~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~ 230 (793)
-..+.+++++|...+.+++..|...+. .+...+...|.+.|++..-.+.
T Consensus 12 ~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~ 67 (421)
T COG5159 12 NAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDT 67 (421)
T ss_pred HhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHH
Confidence 344566677777777776666554333 2344566777777776554443
No 392
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=73.53 E-value=1e+02 Score=30.64 Aligned_cols=154 Identities=14% Similarity=0.053 Sum_probs=76.6
Q ss_pred CCChHHHHHHHHHHHhccCCCCCccchHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH----c
Q 003829 146 HKKTDLALDVFEWFRSCCSKDGNLVLRGSVIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYAS----N 221 (793)
Q Consensus 146 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 221 (793)
.+.+..|...+..... .. ........-.......+...+...|...+......|. ......|...|.. .
T Consensus 54 ~~~~~~a~~~~~~a~~--~~--~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~---~~a~~~lg~~~~~G~gv~ 126 (292)
T COG0790 54 PPDYAKALKSYEKAAE--LG--DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGL---AEALFNLGLMYANGRGVP 126 (292)
T ss_pred cccHHHHHHHHHHhhh--cC--ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhccc---HHHHHhHHHHHhcCCCcc
Confidence 4456666666666543 00 1001111222222223334467778888887766653 3455556666654 3
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc----CCCHH--HHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----
Q 003829 222 GRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKM----GMPWN--KIMALVEGMKSAGVKPDSYTFNTLISCCRR---- 291 (793)
Q Consensus 222 g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~----g~~~~--~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~---- 291 (793)
.+..+|..+|.++.+.|..+...+...+...|... +..++ .|...+.++...+ +......+...|..
T Consensus 127 ~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv 203 (292)
T COG0790 127 LDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGV 203 (292)
T ss_pred cCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCC
Confidence 47788888888888877432223344444444432 11222 5555555555544 22233333322221
Q ss_pred CCCHHHHHHHHHHHHHCC
Q 003829 292 GSLHEEAAGVFEEMKLAG 309 (793)
Q Consensus 292 ~~~~~~A~~~~~~~~~~g 309 (793)
..+.++|...|....+.|
T Consensus 204 ~~d~~~A~~wy~~Aa~~g 221 (292)
T COG0790 204 PRDLKKAFRWYKKAAEQG 221 (292)
T ss_pred CcCHHHHHHHHHHHHHCC
Confidence 234555555555555554
No 393
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=73.50 E-value=90 Score=30.12 Aligned_cols=68 Identities=15% Similarity=0.218 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCChhH-HHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 003829 314 KVTYNALLDVYGKCRRPKEAMQVLREMKIN----GCLPSIVT-YNSLISAYARDGLLEEAMELKTQMVEIGIT 381 (793)
Q Consensus 314 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 381 (793)
...+..+...|++.+|.+.+.++..+..+. |.+-|+.. --.|.-.|....-+++-++..+.|.++|..
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgD 187 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGD 187 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCC
Confidence 344555666666666666666555554332 33333221 111222233333355556666666666543
No 394
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=73.28 E-value=1.3e+02 Score=33.39 Aligned_cols=75 Identities=17% Similarity=0.174 Sum_probs=28.6
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 003829 474 SGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEM 550 (793)
Q Consensus 474 ~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 550 (793)
....+++..+-+..+......++..|.+.|-.+.|.++.+.+-.+-. ...-|..-+..+.++|+...+..+...+
T Consensus 390 ~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~l 464 (566)
T PF07575_consen 390 RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRL 464 (566)
T ss_dssp HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 44444444443334555566667777777777777777666544311 1122333333444445544444443333
No 395
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=71.77 E-value=1e+02 Score=29.97 Aligned_cols=82 Identities=22% Similarity=0.161 Sum_probs=42.3
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 003829 278 DSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLIS 357 (793)
Q Consensus 278 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 357 (793)
|......+...|.+.|++.+|+..|-.- -.++...+..++..+...|...++--.+- ..+-
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl~~----~~~~~~~~~~ll~~~~~~~~~~e~dlfi~---------------RaVL 149 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFLLG----TDPSAFAYVMLLEEWSTKGYPSEADLFIA---------------RAVL 149 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHTS-----HHHHHHHHHHHHHHHHHTSS--HHHHHH---------------HHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHhc----CChhHHHHHHHHHHHHHhcCCcchhHHHH---------------HHHH
Confidence 4555666666777778877777665322 12233333334444444444444322221 1233
Q ss_pred HHHhcCCHHHHHHHHHHHHHc
Q 003829 358 AYARDGLLEEAMELKTQMVEI 378 (793)
Q Consensus 358 ~~~~~g~~~~A~~~~~~m~~~ 378 (793)
.|+..|++..|...+....+.
T Consensus 150 ~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 150 QYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHH
Confidence 466678888888777766654
No 396
>PRK13342 recombination factor protein RarA; Reviewed
Probab=71.06 E-value=1.4e+02 Score=31.43 Aligned_cols=65 Identities=15% Similarity=0.116 Sum_probs=41.4
Q ss_pred HHHHHHHHHH---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-----hHHHHHHHHHHHHcCCC
Q 003829 676 YNTVIFAYCR---NGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSL-----FVEALDVVRYMIKQGCK 740 (793)
Q Consensus 676 ~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-----~~~A~~~~~~~~~~~~~ 740 (793)
+..++.++.+ .++.+.|+.++..|++.|..|....-..+..++...|. ..-|...++-...-|++
T Consensus 230 ~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig~a~~~~~~~~~~~~~~~~~~g~p 302 (413)
T PRK13342 230 HYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIGLADPNALQVAVAAADAVERIGMP 302 (413)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHhCCc
Confidence 4444555544 47899999999999999888766555555555555554 22334445555556654
No 397
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=70.66 E-value=30 Score=29.05 Aligned_cols=44 Identities=9% Similarity=0.074 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHH
Q 003829 726 EALDVVRYMIKQGCKPN-QNTYNSIVDGYCKLNQRYEAITFVNNL 769 (793)
Q Consensus 726 ~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 769 (793)
++.++|+.|..+|+--. +..|...+..+...|++++|.++++..
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~G 125 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLG 125 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 67777777766655443 556666666677777777777776654
No 398
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=70.61 E-value=1.3e+02 Score=30.73 Aligned_cols=95 Identities=14% Similarity=0.190 Sum_probs=47.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHHC-CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH---H----HHH
Q 003829 681 FAYCRNGRMKEASRIFSEMRDS-GLVPD----VITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQN---T----YNS 748 (793)
Q Consensus 681 ~~~~~~g~~~~A~~~~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~---~----~~~ 748 (793)
..|...|+...-..++...+.. .+.-| ....|.|++.|...+.++.|.++..+.. -|+.. - ...
T Consensus 177 l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~----~pe~~snne~ARY~yY 252 (493)
T KOG2581|consen 177 LSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSV----YPEAASNNEWARYLYY 252 (493)
T ss_pred HHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhccc----CccccccHHHHHHHHH
Confidence 3444455555555555444431 11111 2344666666666666666666665543 12111 1 112
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhCCCCCCHH
Q 003829 749 IVDGYCKLNQRYEAITFVNNLSKLDPHVTKE 779 (793)
Q Consensus 749 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 779 (793)
++..-.-++++..|.+.+-.++.+.|+..+.
T Consensus 253 ~GrIkaiqldYssA~~~~~qa~rkapq~~al 283 (493)
T KOG2581|consen 253 LGRIKAIQLDYSSALEYFLQALRKAPQHAAL 283 (493)
T ss_pred HhhHHHhhcchhHHHHHHHHHHHhCcchhhh
Confidence 2333345566777777777777776664444
No 399
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=70.57 E-value=9.4 Score=21.68 Aligned_cols=24 Identities=21% Similarity=0.217 Sum_probs=10.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Q 003829 677 NTVIFAYCRNGRMKEASRIFSEMR 700 (793)
Q Consensus 677 ~~l~~~~~~~g~~~~A~~~~~~~~ 700 (793)
..+..++...|++++|...+++.+
T Consensus 5 ~~~a~~~~~~~~~~~a~~~~~~~~ 28 (34)
T smart00028 5 YNLGNAYLKLGDYDEALEYYEKAL 28 (34)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHH
Confidence 333444444444444444444443
No 400
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=69.97 E-value=96 Score=28.95 Aligned_cols=20 Identities=15% Similarity=0.240 Sum_probs=10.1
Q ss_pred HHHHHcCCHHHHHHHHHHHH
Q 003829 681 FAYCRNGRMKEASRIFSEMR 700 (793)
Q Consensus 681 ~~~~~~g~~~~A~~~~~~~~ 700 (793)
......|++++|.+....+.
T Consensus 72 r~~I~~G~Ie~Aie~in~l~ 91 (228)
T KOG2659|consen 72 RRAIEEGQIEEAIEKVNQLN 91 (228)
T ss_pred HHHHHhccHHHHHHHHHHhC
Confidence 33455555555555554443
No 401
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=68.84 E-value=23 Score=27.86 Aligned_cols=23 Identities=13% Similarity=0.141 Sum_probs=11.2
Q ss_pred HHHHHccCCHHHHHHHHHHHhhC
Q 003829 750 VDGYCKLNQRYEAITFVNNLSKL 772 (793)
Q Consensus 750 ~~~~~~~g~~~~A~~~~~~~~~~ 772 (793)
+......|+.++|...++++++.
T Consensus 48 A~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 48 AELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHH
Confidence 33344445555555555555544
No 402
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=68.57 E-value=19 Score=24.59 Aligned_cols=27 Identities=19% Similarity=0.336 Sum_probs=12.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 003829 680 IFAYCRNGRMKEASRIFSEMRDSGLVPDV 708 (793)
Q Consensus 680 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 708 (793)
.-++.+.|++++|.++.+.+++ +.|+.
T Consensus 8 Aig~ykl~~Y~~A~~~~~~lL~--~eP~N 34 (53)
T PF14853_consen 8 AIGHYKLGEYEKARRYCDALLE--IEPDN 34 (53)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHH--HTTS-
T ss_pred HHHHHHhhhHHHHHHHHHHHHh--hCCCc
Confidence 3444555555555555555555 44443
No 403
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=68.16 E-value=92 Score=28.07 Aligned_cols=56 Identities=11% Similarity=0.231 Sum_probs=38.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCC--------------CCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 003829 678 TVIFAYCRNGRMKEASRIFSEMRDSGL--------------VPDVITYNTFVASYAADSLFVEALDVVRY 733 (793)
Q Consensus 678 ~l~~~~~~~g~~~~A~~~~~~~~~~~~--------------~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 733 (793)
.++..|.+..+|.+++++++.|.+..+ .+.-...|..+..+.+.|.++.|+.++++
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 455667777888888888888876322 12224456667777788888888877764
No 404
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.86 E-value=1.8e+02 Score=31.32 Aligned_cols=160 Identities=11% Similarity=0.057 Sum_probs=97.0
Q ss_pred hcCCHHHHHHHHHHHHhCCC-----------CCCHHHHHHHHHHHHccCCHHHHHHHHHHHH-------HCCCC------
Q 003829 615 RRQMVAKTNEILHFMNDSGF-----------TPSLTTYNTLMYMYSRSENFARAEDVLREIL-------AKGIK------ 670 (793)
Q Consensus 615 ~~g~~~~A~~~~~~~~~~~~-----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~------ 670 (793)
+...+++|...|......-- |--+.+.-.+.+++...|+.+-|.+++++.+ .-.+.
T Consensus 250 hs~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~c 329 (665)
T KOG2422|consen 250 HSNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNC 329 (665)
T ss_pred cchHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccc
Confidence 34456666666665554310 1123344555666777887666665555443 21111
Q ss_pred ------C-CHHHHHHH---HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCChHHHHHHHHHHHHcC-
Q 003829 671 ------P-DIISYNTV---IFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYA-ADSLFVEALDVVRYMIKQG- 738 (793)
Q Consensus 671 ------~-~~~~~~~l---~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~- 738 (793)
| |...|.++ +..+.+.|-+..|.++.+-+......-|+.....+|..|+ +..+|+--+++++.....+
T Consensus 330 RL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~ 409 (665)
T KOG2422|consen 330 RLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNK 409 (665)
T ss_pred cCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhcc
Confidence 1 22223222 3456778999999999999988544446777777888776 6677888888887774322
Q ss_pred --CCCCHHHHHHHHHHHHccCC---HHHHHHHHHHHhhCCC
Q 003829 739 --CKPNQNTYNSIVDGYCKLNQ---RYEAITFVNNLSKLDP 774 (793)
Q Consensus 739 --~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~ 774 (793)
.-|+..--..|+..|.+... .+.|...+.++++..|
T Consensus 410 l~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 410 LSQLPNFGYSLALARFFLRKNEEDDRQSALNALLQALKHHP 450 (665)
T ss_pred HhhcCCchHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCc
Confidence 23553333456666665554 6778888888888877
No 405
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=67.46 E-value=1.2e+02 Score=29.25 Aligned_cols=87 Identities=16% Similarity=0.116 Sum_probs=47.3
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh----
Q 003829 286 ISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYAR---- 361 (793)
Q Consensus 286 ~~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~---- 361 (793)
|.+++..+++.++....-+.-+.--+........-|-.|.|.|++..+.++-......-...+...|.+++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 4455555555555443332222211112333444556677888887777777776654222233456666665554
Q ss_pred -cCCHHHHHHHH
Q 003829 362 -DGLLEEAMELK 372 (793)
Q Consensus 362 -~g~~~~A~~~~ 372 (793)
.|.+++|.++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 57777777765
No 406
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=67.21 E-value=64 Score=31.94 Aligned_cols=77 Identities=17% Similarity=0.362 Sum_probs=43.5
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHC---CCCCCHHHH--HHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCH-HHH
Q 003829 643 TLMYMYSRSENFARAEDVLREILAK---GIKPDIISY--NTVIFAYCRNGRMKEASRIFSEMRD-----SGLVPDV-ITY 711 (793)
Q Consensus 643 ~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~-~~~ 711 (793)
.++....+.++.++|+++++++... .-.|+.+.| ..++.++...|+.+++.+.++...+ -|+.|+. ..|
T Consensus 80 i~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~f 159 (380)
T KOG2908|consen 80 ILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSF 159 (380)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhH
Confidence 3344445566777888877777643 123444444 3344556667777777777776665 3455433 334
Q ss_pred HHHHHHHH
Q 003829 712 NTFVASYA 719 (793)
Q Consensus 712 ~~l~~~~~ 719 (793)
+.+..-|.
T Consensus 160 Y~lssqYy 167 (380)
T KOG2908|consen 160 YSLSSQYY 167 (380)
T ss_pred HHHHHHHH
Confidence 44444443
No 407
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=66.39 E-value=67 Score=25.77 Aligned_cols=81 Identities=19% Similarity=0.189 Sum_probs=46.4
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 003829 292 GSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMEL 371 (793)
Q Consensus 292 ~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 371 (793)
....++|..+.+.+...+.. ...+--.-+..+...|+|++|+ ..-. ....||...|.+|.. .+.|--+++...
T Consensus 19 ~HcH~EA~tIa~wL~~~~~~-~E~v~lIr~~sLmNrG~Yq~AL---l~~~-~~~~pdL~p~~AL~a--~klGL~~~~e~~ 91 (116)
T PF09477_consen 19 HHCHQEANTIADWLEQEGEM-EEVVALIRLSSLMNRGDYQEAL---LLPQ-CHCYPDLEPWAALCA--WKLGLASALESR 91 (116)
T ss_dssp TT-HHHHHHHHHHHHHTTTT-HHHHHHHHHHHHHHTT-HHHHH---HHHT-TS--GGGHHHHHHHH--HHCT-HHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCcH-HHHHHHHHHHHHHhhHHHHHHH---Hhcc-cCCCccHHHHHHHHH--HhhccHHHHHHH
Confidence 34578888888888877531 2222223345567888888882 2211 225677777776543 467888888777
Q ss_pred HHHHHHcC
Q 003829 372 KTQMVEIG 379 (793)
Q Consensus 372 ~~~m~~~g 379 (793)
+.++...|
T Consensus 92 l~rla~~g 99 (116)
T PF09477_consen 92 LTRLASSG 99 (116)
T ss_dssp HHHHCT-S
T ss_pred HHHHHhCC
Confidence 77776655
No 408
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=66.28 E-value=11 Score=38.80 Aligned_cols=103 Identities=13% Similarity=0.098 Sum_probs=65.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcC
Q 003829 610 ISIYGRRQMVAKTNEILHFMNDSGFTPSLTT-YNTLMYMYSRSENFARAEDVLREILAKGIKPD-IISYNTVIFAYCRNG 687 (793)
Q Consensus 610 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g 687 (793)
++.+...+.++.|..++.++++.. ||... |..=..++.+.+++..|+.=+.++++. .|+ ...|.--+.++.+.+
T Consensus 11 an~~l~~~~fd~avdlysKaI~ld--pnca~~~anRa~a~lK~e~~~~Al~Da~kaie~--dP~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIELD--PNCAIYFANRALAHLKVESFGGALHDALKAIEL--DPTYIKAYVRRGTAVMALG 86 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhcC--CcceeeechhhhhheeechhhhHHHHHHhhhhc--CchhhheeeeccHHHHhHH
Confidence 445566777888888888888763 44443 333346777888888888877777775 233 233433445556666
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003829 688 RMKEASRIFSEMRDSGLVPDVITYNTFVASY 718 (793)
Q Consensus 688 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 718 (793)
.+.+|+..|+.... +.|+..-....+.-|
T Consensus 87 ~~~~A~~~l~~~~~--l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 87 EFKKALLDLEKVKK--LAPNDPDATRKIDEC 115 (476)
T ss_pred HHHHHHHHHHHhhh--cCcCcHHHHHHHHHH
Confidence 77777777777766 666665555555544
No 409
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=65.77 E-value=1e+02 Score=27.66 Aligned_cols=48 Identities=17% Similarity=0.275 Sum_probs=22.9
Q ss_pred hHHHHHHHHHHHHcCCCCCh--hHH-----HHHHHHHHhcCCHHHHHHHHHHHHH
Q 003829 330 PKEAMQVLREMKINGCLPSI--VTY-----NSLISAYARDGLLEEAMELKTQMVE 377 (793)
Q Consensus 330 ~~~A~~~~~~~~~~~~~~~~--~~~-----~~li~~~~~~g~~~~A~~~~~~m~~ 377 (793)
++.|+.+|+.+.+.-..|.. ... -..+..|.+.|.+++|.+++++..+
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc
Confidence 45666666666554222210 011 1223345555666666666555554
No 410
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=64.15 E-value=31 Score=31.74 Aligned_cols=36 Identities=22% Similarity=0.347 Sum_probs=25.0
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCC
Q 003829 739 CKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDP 774 (793)
Q Consensus 739 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 774 (793)
..|++..|..++.++...|+.++|..+.+++....|
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 356667776667777777777777777777777766
No 411
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=63.38 E-value=34 Score=28.71 Aligned_cols=44 Identities=14% Similarity=0.253 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHH
Q 003829 691 EASRIFSEMRDSGLVPD-VITYNTFVASYAADSLFVEALDVVRYM 734 (793)
Q Consensus 691 ~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 734 (793)
++.++|+.|...|+.-. ...|...+..+...|++++|.++++..
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~G 125 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLG 125 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 77777777777655433 356677777777777777777777653
No 412
>PRK11619 lytic murein transglycosylase; Provisional
Probab=62.89 E-value=2.7e+02 Score=31.48 Aligned_cols=96 Identities=9% Similarity=-0.054 Sum_probs=53.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHHcC
Q 003829 610 ISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIK--PDIISYNTVIFAYCRNG 687 (793)
Q Consensus 610 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g 687 (793)
+..+...|....|...+..+... .+......+.......|..+.++.........+.. --+..|...+..+.+..
T Consensus 414 a~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rfp~~~~~~~~~~a~~~ 490 (644)
T PRK11619 414 VRELMYWNMDNTARSEWANLVAS---RSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERFPLAWNDEFRRYTSGK 490 (644)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhCCcchHHHHHHHHHHc
Confidence 34456778888888888877764 24455556666666777777777665433221000 00113445555555555
Q ss_pred CHHHHHHHHHHHHHCCCCCCH
Q 003829 688 RMKEASRIFSEMRDSGLVPDV 708 (793)
Q Consensus 688 ~~~~A~~~~~~~~~~~~~p~~ 708 (793)
.++.++-+----.|+++.|+.
T Consensus 491 ~v~~~lv~ai~rqES~f~p~a 511 (644)
T PRK11619 491 GIPQSYAMAIARQESAWNPKA 511 (644)
T ss_pred CCCHHHHHHHHHHhcCCCCCC
Confidence 556555433333455666543
No 413
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=62.86 E-value=1.6e+02 Score=29.08 Aligned_cols=214 Identities=13% Similarity=0.047 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCCCCCCCCCCCcccccCCCCCC
Q 003829 2 AQNLSLPLLLPTPPPAKPLFLTQTNHHNLPPPSPPQQQTTPSASPTTISPLLQDLYNNNSSSQPIHQPRSRTRLGKSRDS 81 (793)
Q Consensus 2 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (793)
..|..-..+.|++|+|.|.....+.+...+.+...+|.++|+++-....+....-.....++...+-....
T Consensus 137 ~~pP~ys~~~~~~p~p~p~~~~~~~p~~p~~~~~~~p~p~p~~~~gas~~~~~~~d~~~~yp~n~~~~~~i--------- 207 (365)
T KOG2391|consen 137 EDPPVYSRSLPSPPPPYPQTEYNTPPLKPKGSAYKPPLPPPPPPGGASALPYMTDDNAEPYPPNASGKLVI--------- 207 (365)
T ss_pred CCCccccCCCCCCCCCCCcccCCCCCCCCCCcCcCCCCCCCCCCCccccCcccCCCCCCcCCCCcccccch---------
Q ss_pred CCCCCCccCccChhHHHHHHHhhcCCCchhhhHHHHHHhhhcCCCCCCccccccHHHHHHHhccCC--------ChHHHH
Q 003829 82 NRGKPWSHHRLSAKGQQVLQSLIDDSFDVKDIDSVLSQLLDQNPGEKSEDLGADLLGIVKGLGFHK--------KTDLAL 153 (793)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~A~ 153 (793)
...-+..+...+.++. +.....+...+..+.+.. +.+.-.
T Consensus 208 ---------------------------rasvisa~~eklR~r~-----eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~ 255 (365)
T KOG2391|consen 208 ---------------------------RASVISAVREKLRRRR-----EEEMERLQAEQESLKRTEEELNIGKQKLVAMK 255 (365)
T ss_pred ---------------------------hHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHH
Q ss_pred HHHHHHHhccCCCCCccchHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003829 154 DVFEWFRSCCSKDGNLVLRGSVIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKK 233 (793)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 233 (793)
+.++.-.. ....+.+++..-..- ..++|..+-.-=...++......+..++.+|+...-.++|+..+++
T Consensus 256 etLEqq~~------~L~~niDIL~~k~~e-----al~~~~n~~~~~~D~~~~~~~~l~kq~l~~~A~d~aieD~i~~L~~ 324 (365)
T KOG2391|consen 256 ETLEQQLQ------SLQKNIDILKSKVRE-----ALEKAENLEALDIDEAIECTAPLYKQILECYALDLAIEDAIYSLGK 324 (365)
T ss_pred HHHHHHHH------HHHhhhHHHHHHHHH-----HHhhhccCcCCCchhhhhccchHHHHHHHhhhhhhHHHHHHHHHHH
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 003829 234 MEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEG 269 (793)
Q Consensus 234 ~~~~~~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~ 269 (793)
..+.|+- +...|..=++.+.+.. .+-.|..-..+
T Consensus 325 ~~r~G~i-~l~~yLr~VR~lsReQ-F~~rat~qk~r 358 (365)
T KOG2391|consen 325 SLRDGVI-DLDQYLRHVRLLSREQ-FILRATMQKCR 358 (365)
T ss_pred HHhcCee-eHHHHHHHHHHHHHHH-HHHHHHHHHHH
No 414
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=62.71 E-value=18 Score=25.73 Aligned_cols=23 Identities=9% Similarity=0.088 Sum_probs=10.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHH
Q 003829 712 NTFVASYAADSLFVEALDVVRYM 734 (793)
Q Consensus 712 ~~l~~~~~~~g~~~~A~~~~~~~ 734 (793)
..++.+|...|++++|.++++++
T Consensus 27 LqvI~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 27 LQVIYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHH
Confidence 34444444444444444444444
No 415
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=62.69 E-value=19 Score=22.16 Aligned_cols=28 Identities=25% Similarity=0.297 Sum_probs=14.4
Q ss_pred HHHHHHHHccCCHHHHHHH--HHHHhhCCC
Q 003829 747 NSIVDGYCKLNQRYEAITF--VNNLSKLDP 774 (793)
Q Consensus 747 ~~l~~~~~~~g~~~~A~~~--~~~~~~~~~ 774 (793)
-.++..+...|++++|+.+ ++-+..+++
T Consensus 5 y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~ 34 (36)
T PF07720_consen 5 YGLAYNFYQKGKYDEAIHFFQYAFLCALDK 34 (36)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence 3445555666666666666 334444443
No 416
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=62.40 E-value=74 Score=33.02 Aligned_cols=56 Identities=16% Similarity=0.125 Sum_probs=39.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHH--ccCCHHHHHHHHHHHHHC
Q 003829 611 SIYGRRQMVAKTNEILHFMNDSGFTPSLT--TYNTLMYMYS--RSENFARAEDVLREILAK 667 (793)
Q Consensus 611 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~--~~g~~~~A~~~~~~~~~~ 667 (793)
..+...+++..|.++++.+.+. ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 139 ~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 139 KELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3455788999999999998886 555554 4455555553 355788888888887764
No 417
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=62.23 E-value=1.1e+02 Score=29.14 Aligned_cols=60 Identities=10% Similarity=-0.010 Sum_probs=40.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-ccCCHHHHHHHHHHHHH
Q 003829 607 NAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYS-RSENFARAEDVLREILA 666 (793)
Q Consensus 607 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~ 666 (793)
..++...-+.|+++++..+++++.+.+...+..=.+.|..+|- ..|....+.+++..+.+
T Consensus 5 i~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~ 65 (236)
T PF00244_consen 5 IYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQ 65 (236)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhh
Confidence 3455667788999999999999999877777776776666662 34555566666666554
No 418
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=62.10 E-value=46 Score=27.48 Aligned_cols=62 Identities=8% Similarity=0.096 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 003829 726 EALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKELECKLSDRI 788 (793)
Q Consensus 726 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l 788 (793)
+..+-++.+...++.|++.+...-+.++.+.+|+.-|+.+++-+..+-+. ....|..+++.|
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~-~k~~Y~y~v~el 128 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGA-QKQVYPYYVKEL 128 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhccc-HHHHHHHHHHHH
Confidence 45556667777889999999999999999999999999999988766433 233677666654
No 419
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.05 E-value=3.1e+02 Score=31.92 Aligned_cols=27 Identities=26% Similarity=0.521 Sum_probs=21.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003829 316 TYNALLDVYGKCRRPKEAMQVLREMKI 342 (793)
Q Consensus 316 ~~~~li~~~~~~g~~~~A~~~~~~~~~ 342 (793)
-|..|+..|...|+.++|+++|.+..+
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhc
Confidence 467788888888888888888888765
No 420
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=61.10 E-value=1.7e+02 Score=28.62 Aligned_cols=62 Identities=5% Similarity=0.184 Sum_probs=38.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhCCChHHHHHHH
Q 003829 416 KPNICTFNALIKMHGNRGNFVEMMKVFDEINKC-NCKPDIVTWNTLLAVFGQNGMDSEVSGVF 477 (793)
Q Consensus 416 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 477 (793)
.++..+...++..++..+++..-.++++..... +..-|...|..+|......|+..-...+.
T Consensus 199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI 261 (292)
T PF13929_consen 199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKII 261 (292)
T ss_pred CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHh
Confidence 455666666666777777777766666665444 44456666666666666666655444443
No 421
>PHA02875 ankyrin repeat protein; Provisional
Probab=60.94 E-value=2.1e+02 Score=30.19 Aligned_cols=205 Identities=16% Similarity=0.094 Sum_probs=87.0
Q ss_pred hcCChHHHHHHHHHHhhCCCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHhcCCCH
Q 003829 185 KEGKVSVAASLLHGLHKDGFDIDVYA--YTSLITTYASNGRYREAVMVFKKMEEEGCKPTLI--TYNVILNVYGKMGMPW 260 (793)
Q Consensus 185 ~~~~~~~A~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~--~~~~ll~~~~~~g~~~ 260 (793)
..|..+.+..++ +.|..++... ..+.+...++.|+.+ +.+.+.+.|..|+.. .....+...++.| +.
T Consensus 11 ~~g~~~iv~~Ll----~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g-~~ 81 (413)
T PHA02875 11 LFGELDIARRLL----DIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEG-DV 81 (413)
T ss_pred HhCCHHHHHHHH----HCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCC-CH
Confidence 445554443333 3444433321 233444555666654 334444555444332 1122334444556 55
Q ss_pred HHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHhcCChHHHHH
Q 003829 261 NKIMALVEGMKSAGVKPDSY---TFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVT--YNALLDVYGKCRRPKEAMQ 335 (793)
Q Consensus 261 ~~a~~~~~~~~~~~~~p~~~---~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~ 335 (793)
+.+..+++ .|...+.. .-.+.+...+..|+.+ +.+.+.+.|..++... -.+.+...+..|+.+-+.-
T Consensus 82 ~~v~~Ll~----~~~~~~~~~~~~g~tpL~~A~~~~~~~----iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~ 153 (413)
T PHA02875 82 KAVEELLD----LGKFADDVFYKDGMTPLHLATILKKLD----IMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIEL 153 (413)
T ss_pred HHHHHHHH----cCCcccccccCCCCCHHHHHHHhCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHH
Confidence 55444443 23211110 0112333334445543 4444455565544321 1233444556666654443
Q ss_pred HHHHHHHcCCCCCh---hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHH
Q 003829 336 VLREMKINGCLPSI---VTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFT---YTTLLSGFEKAGKDESAMKVFEE 409 (793)
Q Consensus 336 ~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~---~~~li~~~~~~g~~~~a~~~~~~ 409 (793)
++ +.|..++. ..++.+ ...+..|+.+ +.+.+.+.|..++... ..+.+...+..|+.+ +.+.
T Consensus 154 Ll----~~g~~~~~~d~~g~TpL-~~A~~~g~~e----iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv~~ 220 (413)
T PHA02875 154 LI----DHKACLDIEDCCGCTPL-IIAMAKGDIA----ICKMLLDSGANIDYFGKNGCVAALCYAIENNKID----IVRL 220 (413)
T ss_pred HH----hcCCCCCCCCCCCCCHH-HHHHHcCCHH----HHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----HHHH
Confidence 33 33333222 122222 2334455543 4444555665554321 123444344555554 4444
Q ss_pred HHHCCCCCCH
Q 003829 410 MRSAGCKPNI 419 (793)
Q Consensus 410 ~~~~~~~~~~ 419 (793)
+.+.|..++.
T Consensus 221 Ll~~gad~n~ 230 (413)
T PHA02875 221 FIKRGADCNI 230 (413)
T ss_pred HHHCCcCcch
Confidence 4556655553
No 422
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=60.22 E-value=12 Score=36.75 Aligned_cols=88 Identities=13% Similarity=0.032 Sum_probs=43.5
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHH
Q 003829 615 RRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPD-IISYNTVIFAYCRNGRMKEAS 693 (793)
Q Consensus 615 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~ 693 (793)
..|.+++|++.|...++.. ++....|.-=.+++.+.++...|+.=++..+.. .|| ..-|-.-..+-...|+|++|.
T Consensus 126 n~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--n~Dsa~~ykfrg~A~rllg~~e~aa 202 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--NPDSAKGYKFRGYAERLLGNWEEAA 202 (377)
T ss_pred cCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhcc--CcccccccchhhHHHHHhhchHHHH
Confidence 3455556665555555543 334444444445555555555555555555542 333 222333333334445556665
Q ss_pred HHHHHHHHCCCC
Q 003829 694 RIFSEMRDSGLV 705 (793)
Q Consensus 694 ~~~~~~~~~~~~ 705 (793)
+.|....+.++.
T Consensus 203 ~dl~~a~kld~d 214 (377)
T KOG1308|consen 203 HDLALACKLDYD 214 (377)
T ss_pred HHHHHHHhcccc
Confidence 555555554443
No 423
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=60.18 E-value=67 Score=25.03 Aligned_cols=54 Identities=15% Similarity=0.169 Sum_probs=30.9
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHH
Q 003829 707 DVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLNQRY 760 (793)
Q Consensus 707 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~ 760 (793)
|...-..+...+...|++++|++.+-++++..-.. +...-..++..+.-.|.-+
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~ 75 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD 75 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence 55666777777888888888888887777543222 2334445555555555533
No 424
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=59.20 E-value=30 Score=24.62 Aligned_cols=46 Identities=20% Similarity=0.408 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003829 654 FARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRD 701 (793)
Q Consensus 654 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 701 (793)
++...++++.+... +-|-.-...++.+|...|++++|.++++++.+
T Consensus 6 ~~~~~~~~~~lR~~--RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 6 LEELEELIDSLRAQ--RHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34444555555432 22444455667777777777777777777665
No 425
>PHA02875 ankyrin repeat protein; Provisional
Probab=59.17 E-value=2.3e+02 Score=29.80 Aligned_cols=16 Identities=13% Similarity=-0.082 Sum_probs=7.0
Q ss_pred HHHHhcCChHHHHHHH
Q 003829 322 DVYGKCRRPKEAMQVL 337 (793)
Q Consensus 322 ~~~~~~g~~~~A~~~~ 337 (793)
...++.|+.+.+..++
T Consensus 73 ~~A~~~g~~~~v~~Ll 88 (413)
T PHA02875 73 HDAVEEGDVKAVEELL 88 (413)
T ss_pred HHHHHCCCHHHHHHHH
Confidence 3344455554443333
No 426
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=59.15 E-value=59 Score=25.52 Aligned_cols=54 Identities=17% Similarity=0.083 Sum_probs=34.6
Q ss_pred HHHcCCHHHHHHHHHHHHHC----CCCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003829 683 YCRNGRMKEASRIFSEMRDS----GLVP----DVITYNTFVASYAADSLFVEALDVVRYMIK 736 (793)
Q Consensus 683 ~~~~g~~~~A~~~~~~~~~~----~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 736 (793)
..+.|++.+|.+.+.+..+. +... -......++......|++++|++.+++.++
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34667777776666655542 2211 013334566677788999999999999875
No 427
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=58.03 E-value=66 Score=28.76 Aligned_cols=21 Identities=19% Similarity=0.300 Sum_probs=11.6
Q ss_pred HHHHhcCChHHHHHHHHHHHH
Q 003829 716 ASYAADSLFVEALDVVRYMIK 736 (793)
Q Consensus 716 ~~~~~~g~~~~A~~~~~~~~~ 736 (793)
..|.+.|.+++|.+++++..+
T Consensus 119 ~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 119 AVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHhcCchHHHHHHHHHHhc
Confidence 345555555555555555543
No 428
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=57.82 E-value=3.3e+02 Score=30.94 Aligned_cols=108 Identities=12% Similarity=0.048 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHccCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHH
Q 003829 619 VAKTNEILHFMNDSGFTPSLTTYNTLMYM-YSRSENFARAEDVLREILAKGIKPDII-SYNTVIFAYCRNGRMKEASRIF 696 (793)
Q Consensus 619 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~ 696 (793)
+..|...|.........+...+....... +...++.+.++.+|+.....|.. +.. .|...+..-...|+...++.++
T Consensus 442 F~~A~~eLt~~~~~~~Dt~~~~~q~wA~~E~sl~~nmd~~R~iWn~imty~~~-~iag~Wle~~~lE~~~g~~~~~R~~~ 520 (881)
T KOG0128|consen 442 FNHAWEELTELYGDQLDTRTEVLQLWAQVEASLLKNMDKAREIWNFIMTYGGG-SIAGKWLEAINLEREYGDGPSARKVL 520 (881)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhchhhhhHhhhccccCCcc-hHHHHHHHHHhHHHHhCCchhHHHHH
Confidence 45555555554443212222222222222 23467888888888888876422 333 4555555556668888888877
Q ss_pred HHHHHCCCCCCH--HHHHHHHHHHHhcCChHHH
Q 003829 697 SEMRDSGLVPDV--ITYNTFVASYAADSLFVEA 727 (793)
Q Consensus 697 ~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A 727 (793)
..+...-..|+. .++..+.+.-...|.++..
T Consensus 521 R~ay~~~~~~~~~~ev~~~~~r~Ere~gtl~~~ 553 (881)
T KOG0128|consen 521 RKAYSQVVDPEDALEVLEFFRRFEREYGTLESF 553 (881)
T ss_pred HHHHhcCcCchhHHHHHHHHHHHHhccccHHHH
Confidence 777765455542 3333333333344444443
No 429
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=56.09 E-value=2.3e+02 Score=28.56 Aligned_cols=254 Identities=11% Similarity=0.038 Sum_probs=0.0
Q ss_pred HHHHHhcCChHHHHHHHHHHhcC-CCCCCHhhHHHHHHHHHcCC-----CHHHHHHHHHHHHhHHHHHHHHHCCCCCC--
Q 003829 531 LAALARGGMWEQSEKIFAEMKGG-RCKPNELTYSSLLHAYANGR-----EIDQMLALSEEIYSERAFLELKKKGFSPD-- 602 (793)
Q Consensus 531 ~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-- 602 (793)
+.++++.|... ...+++-+... ....+...|..++..+.... ..+.....++.....-.-......|..+.
T Consensus 45 ~~al~~~g~~~-~~~~l~l~~~~~~~E~~~~vw~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~ 123 (324)
T PF11838_consen 45 LFALARAGRLS-YSDFLDLLEYLLPNETDYVVWSTALSNLSSLRNRLYAEDEELQEAFRKFVRRLLEPLYERLGWDPRPG 123 (324)
T ss_dssp HHHHHHTTSS--HHHHHHHHGGG-GT--SHHHHHHHHHHHHHHHHHHCSC-HHHHHHHHHHHHHHHHHHHHH--SSSS--
T ss_pred HHHHHHcCCCC-HHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCCCCccc
Q ss_pred HHHHHHHHHHH-HhcCC-----HHHHHHHHHHHHhCCC----CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC
Q 003829 603 IPTLNAMISIY-GRRQM-----VAKTNEILHFMNDSGF----TPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPD 672 (793)
Q Consensus 603 ~~~~~~l~~~~-~~~g~-----~~~A~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 672 (793)
.......++.. ..... .++|.+.|+.....+. ..++.....+.....+.|+.+.-..+++.... ..+
T Consensus 124 ~~~~~~~lr~~~~~~a~~~~~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~---~~~ 200 (324)
T PF11838_consen 124 EDHNDRLLRALLLSLACGDPECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKN---STS 200 (324)
T ss_dssp SCHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHT---TST
T ss_pred ccHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhc---cCC
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCChHHHHHHHHH---HHHcCCCCCHHHHHH
Q 003829 673 IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASY-AADSLFVEALDVVRY---MIKQGCKPNQNTYNS 748 (793)
Q Consensus 673 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~~~~A~~~~~~---~~~~~~~p~~~~~~~ 748 (793)
......++.+++...+.+...++++.+...+..+.......+.... ...--.+.+.+++.. .+...+..+......
T Consensus 201 ~~~k~~~l~aLa~~~d~~~~~~~l~~~l~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~n~~~i~~~~~~~~~~~~~ 280 (324)
T PF11838_consen 201 PEEKRRLLSALACSPDPELLKRLLDLLLSNDKVRSQDIRYVLAGLASSNPVGRDLAWEFFKENWDAIIKKFGTNSSALSR 280 (324)
T ss_dssp HHHHHHHHHHHTT-S-HHHHHHHHHHHHCTSTS-TTTHHHHHHHHH-CSTTCHHHHHHHHHHCHHHHHCHC-TTSHCCHH
T ss_pred HHHHHHHHHhhhccCCHHHHHHHHHHHcCCcccccHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhcCCChHHHH
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 003829 749 IVDGYCKLNQRYEAITFVNNLSKLDPHVTKELECKLSDRI 788 (793)
Q Consensus 749 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l 788 (793)
++..+...-..++-.+.+++..+..+++....-+.+.+.+
T Consensus 281 ~~~~~~~~~~t~~~~~~~~~f~~~~~~~~~~~~r~l~q~~ 320 (324)
T PF11838_consen 281 VIKSFAGNFSTEEQLDELEEFFEDKPKPPPGLRRALAQSL 320 (324)
T ss_dssp HHHCCCTT--SHHHHHHHHHHHHHHCTCCCTTTHHCHHHH
T ss_pred HHHHHhccCCCHHHHHHHHHHHhhCcCCChHHHHHHHHHH
No 430
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=55.65 E-value=2.1e+02 Score=28.04 Aligned_cols=228 Identities=15% Similarity=0.172 Sum_probs=0.0
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC
Q 003829 234 MEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPD 313 (793)
Q Consensus 234 ~~~~~~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~~~ 313 (793)
....|..|-.+.-..+-.-+.+.|....=|.++|.... .....+.++.++.+.+.-+.-.++| +|+
T Consensus 157 ~l~nGt~~~tvl~~L~~d~LVkeGi~l~F~~~lFk~~~------~Ek~i~~lis~Lrkg~md~rLmeff--------Ppn 222 (412)
T KOG2297|consen 157 LLSNGTLPATVLQSLLNDNLVKEGIALSFAVKLFKEWL------VEKDINDLISSLRKGKMDDRLMEFF--------PPN 222 (412)
T ss_pred HHhCCCCCHHHHHHHHHhhHHHHhHHHHHHHHHHHHHH------hhccHHHHHHHHHhcChHhHHHHhc--------CCc
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003829 314 KVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSG 393 (793)
Q Consensus 314 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 393 (793)
..+-......+...|--+-..-.=.++- ...-...-..|..-..+...+++.....++-.+..--|+......+=.+
T Consensus 223 krs~E~Fak~Ft~agL~elvey~~~q~~---~~a~kElq~~L~~q~s~e~p~~evi~~VKee~k~~nlPe~eVi~ivWs~ 299 (412)
T KOG2297|consen 223 KRSVEHFAKYFTDAGLKELVEYHRNQQS---EGARKELQKELQEQVSEEDPVKEVILYVKEEMKRNNLPETEVIGIVWSG 299 (412)
T ss_pred chhHHHHHHHHhHhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCceEEeeeHhh
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH---------------HHHHHHHHhCCCCCCHHHHH
Q 003829 394 FEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEM---------------MKVFDEINKCNCKPDIVTWN 458 (793)
Q Consensus 394 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A---------------~~~~~~~~~~~~~~~~~~~~ 458 (793)
....+.+.+-.++..+-.-+ ....|.-|+.++|.+|+.+-. ++.|.++...-.+.++.+=.
T Consensus 300 iMsaveWnKkeelva~qalr----hlK~yaPLL~af~s~g~sEL~Ll~KvQe~CYen~~fMKaFqkiV~lfYk~dVLsEe 375 (412)
T KOG2297|consen 300 IMSAVEWNKKEELVAEQALR----HLKQYAPLLAAFCSQGQSELELLLKVQEYCYENIHFMKAFQKIVVLFYKADVLSEE 375 (412)
T ss_pred hhHHHhhchHHHHHHHHHHH----HHHhhhHHHHHHhcCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhH
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHH
Q 003829 459 TLLAVFGQNGMDSEVSGVFKEMKR 482 (793)
Q Consensus 459 ~l~~~~~~~~~~~~a~~~~~~m~~ 482 (793)
.++..|-.......-...++.|..
T Consensus 376 ~IL~Wyk~gh~~KGk~~Fleqmkk 399 (412)
T KOG2297|consen 376 TILKWYKEGHVAKGKSVFLEQMKK 399 (412)
T ss_pred HHHHHHHhccccccHHHHHHHHHH
No 431
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=55.56 E-value=2.1e+02 Score=28.00 Aligned_cols=116 Identities=12% Similarity=0.116 Sum_probs=71.4
Q ss_pred ChHHHHHHHHHHHH-cCCCCChhHHHHHHHHHHh-cC-CHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 003829 329 RPKEAMQVLREMKI-NGCLPSIVTYNSLISAYAR-DG-LLEEAMELKTQMVE-IGITPDVFTYTTLLSGFEKAGKDESAM 404 (793)
Q Consensus 329 ~~~~A~~~~~~~~~-~~~~~~~~~~~~li~~~~~-~g-~~~~A~~~~~~m~~-~g~~~~~~~~~~li~~~~~~g~~~~a~ 404 (793)
.+.+|+++|+...- ..+-.|......+++.... .+ ....-.++.+-+.. .|..++..+...++..+++.+++.+-.
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence 34566666662211 1133355555555555554 22 12222233333332 234566677778888888888888888
Q ss_pred HHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003829 405 KVFEEMRSA-GCKPNICTFNALIKMHGNRGNFVEMMKVFDE 444 (793)
Q Consensus 405 ~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 444 (793)
++++..... +...|...|..+++.....|+..-..++.++
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 888877655 5566888888888888888888777666654
No 432
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=55.44 E-value=2.6e+02 Score=29.05 Aligned_cols=73 Identities=16% Similarity=0.257 Sum_probs=50.9
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003829 642 NTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYA 719 (793)
Q Consensus 642 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 719 (793)
..|+.-|...|+..+|...++++--- +-...+.+.+++.+..+.|+-..-+.+++.+...|.. |-+.+-.+|.
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLgmP-fFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sglI----T~nQMtkGf~ 585 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELGMP-FFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGLI----TTNQMTKGFE 585 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCCC-cchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCce----eHHHhhhhhh
Confidence 45667788888999998888776321 1224677888888888888888888888888776653 4445544443
No 433
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=55.30 E-value=98 Score=24.09 Aligned_cols=54 Identities=13% Similarity=0.016 Sum_probs=30.0
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCC
Q 003829 670 KPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSL 723 (793)
Q Consensus 670 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~ 723 (793)
+.|...-..+...+...|++++|++.+-++++..... +...-..++..+...|.
T Consensus 19 P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 19 PDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 3355666667777777777777777777777643222 22344455555555554
No 434
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.55 E-value=4e+02 Score=30.60 Aligned_cols=288 Identities=13% Similarity=0.067 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 003829 458 NTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARG 537 (793)
Q Consensus 458 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 537 (793)
+.+=..|...|++++|.++-+.-.+. -...+..-...|...+++..|-+++.++ ...+..+.--+...
T Consensus 362 R~vWk~yLd~g~y~kAL~~ar~~p~~----le~Vl~~qAdf~f~~k~y~~AA~~yA~t--------~~~FEEVaLKFl~~ 429 (911)
T KOG2034|consen 362 RDVWKTYLDKGEFDKALEIARTRPDA----LETVLLKQADFLFQDKEYLRAAEIYAET--------LSSFEEVALKFLEI 429 (911)
T ss_pred HHHHHHHHhcchHHHHHHhccCCHHH----HHHHHHHHHHHHHhhhHHHHHHHHHHHh--------hhhHHHHHHHHHhc
Q ss_pred CChHHHHHHHHHHhcCCCCCCHhhHHHHHHHHH------cCCCHH----HHHHHHHHHHhHHHHHHHHHCCCCCCHHHHH
Q 003829 538 GMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYA------NGREID----QMLALSEEIYSERAFLELKKKGFSPDIPTLN 607 (793)
Q Consensus 538 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~------~~~~~~----~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 607 (793)
.+.+ +++.|-.=+-.+++|...+-..++..+. +.++.+ ++...++.-.....-.-+.......+.....
T Consensus 430 ~~~~-~L~~~L~KKL~~lt~~dk~q~~~Lv~WLlel~L~~Ln~l~~~de~~~en~~~~~~~~~re~~~~~~~~~~~~nre 508 (911)
T KOG2034|consen 430 NQER-ALRTFLDKKLDRLTPEDKTQRDALVTWLLELYLEQLNDLDSTDEEALENWRLEYDEVQREFSKFLVLHKDELNRE 508 (911)
T ss_pred CCHH-HHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHhhHHhhhHH
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH------------------------
Q 003829 608 AMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLRE------------------------ 663 (793)
Q Consensus 608 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~------------------------ 663 (793)
+..+.+...|+.++...+-..+.+ |..++.-+++.+++++|++++..
T Consensus 509 tv~~l~~~~~~~e~ll~fA~l~~d---------~~~vv~~~~q~e~yeeaLevL~~~~~~el~yk~ap~Li~~~p~~tV~ 579 (911)
T KOG2034|consen 509 TVYQLLASHGRQEELLQFANLIKD---------YEFVVSYWIQQENYEEALEVLLNQRNPELFYKYAPELITHSPKETVS 579 (911)
T ss_pred HHHHHHHHccCHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHhhhHHHhcCcHHHHH
Q ss_pred -HHHCCCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 003829 664 -ILAKGIKPDIISYNTVIFAYCRN---GRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGC 739 (793)
Q Consensus 664 -~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 739 (793)
....+-.........++..+.+. .....+..+++-....-..-+...+|.++..|.+..+-+.-..+-.-+...+-
T Consensus 580 ~wm~~~d~~~~~li~~~L~~~~~~~~~~~~~~~i~yl~f~~~~l~~~~~~ihn~ll~lya~~~~~~ll~~le~~~~~~~~ 659 (911)
T KOG2034|consen 580 AWMAQKDLDPNRLIPPILSYFSNWHSEYEENQAIRYLEFCIEVLGMTNPAIHNSLLHLYAKHERDDLLLYLEIIKFMKSR 659 (911)
T ss_pred HHHHccccCchhhhHHHHHHHhcCCccccHHHHHHHHHHHHHhccCcCHHHHHHHHHHhhcCCccchHHHHHHHhhcccc
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 003829 740 KPNQNTYNSIVDGYCKLNQRYEAITFVNNL 769 (793)
Q Consensus 740 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 769 (793)
...-....+..|.+.+...-++.++..+
T Consensus 660 --~~YDl~~alRlc~~~~~~ra~V~l~~~l 687 (911)
T KOG2034|consen 660 --VHYDLDYALRLCLKFKKTRACVFLLCML 687 (911)
T ss_pred --ceecHHHHHHHHHHhCccceeeeHHHHH
No 435
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=53.41 E-value=4e+02 Score=30.58 Aligned_cols=77 Identities=12% Similarity=0.033 Sum_probs=43.3
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh-HH----HHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 003829 684 CRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLF-VE----ALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQ 758 (793)
Q Consensus 684 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~----A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 758 (793)
++.++.+.|+.++.+|++.|..|....-..++.+....|.- .. |...++-....|++--.......+-.++..-+
T Consensus 269 irgsD~daAl~~la~ml~~Gedp~~I~Rrl~~~asEdigladp~al~~~~~~~~a~~~~g~pE~~~~laq~~~~la~apK 348 (725)
T PRK13341 269 LRGSDPDAALYWLARMVEAGEDPRFIFRRMLIAASEDVGLADPQALVVVEACAAAFERVGLPEGLYPLAQAALYLATAPK 348 (725)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhCCcchhhHHHHHHHHHHcCCC
Confidence 35589999999999999999887655555555455455642 22 33334444455654323333333333443333
Q ss_pred HH
Q 003829 759 RY 760 (793)
Q Consensus 759 ~~ 760 (793)
-.
T Consensus 349 Sn 350 (725)
T PRK13341 349 SN 350 (725)
T ss_pred cc
Confidence 33
No 436
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=53.40 E-value=8.9 Score=37.65 Aligned_cols=120 Identities=12% Similarity=0.037 Sum_probs=84.2
Q ss_pred HHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChHH
Q 003829 648 YSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDV-ITYNTFVASYAADSLFVE 726 (793)
Q Consensus 648 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~ 726 (793)
....|.+++|++.|...+... ++....|..-..++.+.++...|.+=+...++ +.||. .-|-.-..+-.-.|++++
T Consensus 124 Aln~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~e--in~Dsa~~ykfrg~A~rllg~~e~ 200 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIE--INPDSAKGYKFRGYAERLLGNWEE 200 (377)
T ss_pred HhcCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhc--cCcccccccchhhHHHHHhhchHH
Confidence 345678999999998888763 44566677777888888899999988888888 66665 445455555566789999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhC
Q 003829 727 ALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKL 772 (793)
Q Consensus 727 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 772 (793)
|...+....+.++.+... ..+-.+.-..+..++-...+++..+.
T Consensus 201 aa~dl~~a~kld~dE~~~--a~lKeV~p~a~ki~e~~~k~er~~~e 244 (377)
T KOG1308|consen 201 AAHDLALACKLDYDEANS--ATLKEVFPNAGKIEEHRRKYERAREE 244 (377)
T ss_pred HHHHHHHHHhccccHHHH--HHHHHhccchhhhhhchhHHHHHHHH
Confidence 999999988866554433 34444455666666666666665544
No 437
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=53.29 E-value=1.8e+02 Score=26.41 Aligned_cols=55 Identities=16% Similarity=0.201 Sum_probs=28.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCC--------------CCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 003829 608 AMISIYGRRQMVAKTNEILHFMNDSGF--------------TPSLTTYNTLMYMYSRSENFARAEDVLR 662 (793)
Q Consensus 608 ~l~~~~~~~g~~~~A~~~~~~~~~~~~--------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 662 (793)
+++-.|.+..++.++.++++.|.+..+ .+.-...|..+..+.+.|..+.|+.+++
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHh
Confidence 344455666666677777666665321 2222334444445555555555555544
No 438
>PF14929 TAF1_subA: TAF RNA Polymerase I subunit A
Probab=52.94 E-value=3.4e+02 Score=29.67 Aligned_cols=99 Identities=11% Similarity=0.076 Sum_probs=45.3
Q ss_pred cHHHHHHHhccCCChHHHHHHHHHHHhccCCCCCccchHHHHHHHHHHHHhcCCh-------HHHHHHHH----HHhhCC
Q 003829 135 DLLGIVKGLGFHKKTDLALDVFEWFRSCCSKDGNLVLRGSVIAVLISMLGKEGKV-------SVAASLLH----GLHKDG 203 (793)
Q Consensus 135 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-------~~A~~~~~----~~~~~~ 203 (793)
.+..+++.+....+|..|.+++..+.+.-............|.+...++.+.-+- ...-.++. +|....
T Consensus 49 r~l~ll~e~l~~h~W~~Aa~~~s~ylq~~~~~~s~~~~~~~~~v~~Eil~~~~~~~~~~~~~~~~~~~y~~w~~rm~~~~ 128 (547)
T PF14929_consen 49 RCLRLLREALLQHQWQEAAGVMSSYLQGLEDDDSPQRAREIFRVGTEILKHHPNSSTFAIRMKRIGVIYDVWMERMKTPT 128 (547)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHhccccchhhhhHHHHHHHHHHHcCCccccchhhhhhhhhhhHHHHHhhcccc
Confidence 3455666666667777777777766542222211112333333333333322210 00111111 122222
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003829 204 FDIDVYAYTSLITTYASNGRYREAVMVFKK 233 (793)
Q Consensus 204 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 233 (793)
+.....++-..+-.+..+|..+++...+..
T Consensus 129 ~~~~~~V~LE~al~ll~qG~ie~~~~~lt~ 158 (547)
T PF14929_consen 129 FEEKLAVSLEHALFLLSQGNIEEAAYQLTI 158 (547)
T ss_pred hhhhhHHHHHHHHHHHhCCchHHHHHHHHH
Confidence 222223555556667788998866665555
No 439
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=52.43 E-value=1.2e+02 Score=24.12 Aligned_cols=86 Identities=19% Similarity=0.173 Sum_probs=54.7
Q ss_pred ChHHHHHHHHHHHhccCCCCCccchHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 003829 148 KTDLALDVFEWFRSCCSKDGNLVLRGSVIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREA 227 (793)
Q Consensus 148 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 227 (793)
..++|..+-+|+.. .......+--+-+..+...|++++|..+.+.. ..||...|.+|- -.+.|-.+++
T Consensus 20 cHqEA~tIAdwL~~------~~~~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALc--e~rlGl~s~l 87 (115)
T TIGR02508 20 CHQEANTIADWLHL------KGESEEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALC--EWRLGLGSAL 87 (115)
T ss_pred HHHHHHHHHHHHhc------CCchHHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHH--HHhhccHHHH
Confidence 45678888888765 11113334444556777888888888777665 346777775543 4577777777
Q ss_pred HHHHHHHHHcCCCCCHHHH
Q 003829 228 VMVFKKMEEEGCKPTLITY 246 (793)
Q Consensus 228 ~~~~~~~~~~~~~p~~~~~ 246 (793)
...+.+|...| .|...+|
T Consensus 88 ~~rl~rla~sg-~p~lq~F 105 (115)
T TIGR02508 88 ESRLNRLAASG-DPRLQTF 105 (115)
T ss_pred HHHHHHHHhCC-CHHHHHH
Confidence 77787887766 3444433
No 440
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=52.16 E-value=2.9e+02 Score=28.57 Aligned_cols=153 Identities=14% Similarity=0.084 Sum_probs=82.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003829 602 DIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIF 681 (793)
Q Consensus 602 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 681 (793)
+..+...++. ...|+...|+..++.+.... .++... ..+...+++++-... +..+-..+.-++.
T Consensus 191 ~~~a~~~l~~--~s~GD~R~aLN~LE~~~~~~-~~~~~~------------~~~~l~~~l~~~~~~-~Dk~gD~hYdliS 254 (436)
T COG2256 191 DEEALDYLVR--LSNGDARRALNLLELAALSA-EPDEVL------------ILELLEEILQRRSAR-FDKDGDAHYDLIS 254 (436)
T ss_pred CHHHHHHHHH--hcCchHHHHHHHHHHHHHhc-CCCccc------------CHHHHHHHHhhhhhc-cCCCcchHHHHHH
Confidence 3334444433 24577788777777766543 222100 123333333332222 3345456666777
Q ss_pred HHHHc---CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-----hHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003829 682 AYCRN---GRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSL-----FVEALDVVRYMIKQGCKPNQNTYNSIVDGY 753 (793)
Q Consensus 682 ~~~~~---g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-----~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 753 (793)
++-++ .+.+.|+-++-+|++.|-.|....-..++-++...|. ..-|...++.+...|.+--.......+--+
T Consensus 255 A~hKSvRGSD~dAALyylARmi~~GeDp~yiARRlv~~AsEDIGlAdP~Al~~a~aa~da~~~lG~PE~~i~LAqavvyL 334 (436)
T COG2256 255 ALHKSVRGSDPDAALYYLARMIEAGEDPLYIARRLVRIASEDIGLADPNALQVAVAALDAVERLGSPEARIALAQAVVYL 334 (436)
T ss_pred HHHHhhccCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCCChhHHHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 77554 6899999999999998887766666677777777776 223444455555566433233332222223
Q ss_pred HccCCHHHHHHHHHHHh
Q 003829 754 CKLNQRYEAITFVNNLS 770 (793)
Q Consensus 754 ~~~g~~~~A~~~~~~~~ 770 (793)
+-.-+-..+...+++++
T Consensus 335 A~aPKSNavY~A~~~A~ 351 (436)
T COG2256 335 ALAPKSNAVYTAINAAL 351 (436)
T ss_pred HhCCccHHHHHHHHHHH
Confidence 33444444444444443
No 441
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=52.12 E-value=1.1e+02 Score=23.62 Aligned_cols=36 Identities=22% Similarity=0.243 Sum_probs=17.6
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 003829 501 RCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWE 541 (793)
Q Consensus 501 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 541 (793)
..|+.+.|.+++..+. +| ...|..++.++...|..+
T Consensus 48 ~~g~~~~ar~LL~~L~-rg----~~aF~~Fl~aLreT~~~~ 83 (88)
T cd08819 48 NHGNESGARELLKRIV-QK----EGWFSKFLQALRETEHHE 83 (88)
T ss_pred ccCcHHHHHHHHHHhc-cC----CcHHHHHHHHHHHcCchh
Confidence 3455555555555555 32 224445555555554433
No 442
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=51.57 E-value=1.4e+02 Score=24.94 Aligned_cols=43 Identities=16% Similarity=0.321 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHH
Q 003829 690 KEASRIFSEMRDSGLVPDV-ITYNTFVASYAADSLFVEALDVVR 732 (793)
Q Consensus 690 ~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~ 732 (793)
++..++|..|...|+.-.. ..|...+..+...|++.+|.++|+
T Consensus 80 ~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 80 DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3356667777666554333 445566666666677777766664
No 443
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=51.23 E-value=1.5e+02 Score=25.10 Aligned_cols=69 Identities=14% Similarity=0.196 Sum_probs=39.8
Q ss_pred CCHHHHHHHHHHHHccC---CHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 003829 636 PSLTTYNTLMYMYSRSE---NFARAEDVLREILAKGIKPD--IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPD 707 (793)
Q Consensus 636 ~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 707 (793)
++..+--.+..++.+.. +.++.+.+++++.+.. .|+ ..-...|.-++.+.+++++++++.+.+++ .+||
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~-~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~--~e~~ 103 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSA-HPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE--TEPN 103 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhc-CcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh--hCCC
Confidence 44444445555555544 3556666777777522 222 23334455567777777777777777777 4444
No 444
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=50.77 E-value=4.1e+02 Score=29.86 Aligned_cols=253 Identities=10% Similarity=0.056 Sum_probs=128.6
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHH----HHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCH
Q 003829 430 GNRGNFVEMMKVFDEINKCNCKPDIVTW----NTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSF 505 (793)
Q Consensus 430 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~ 505 (793)
...|+..+|.+++.-.+-.... ....| ..+.-++...+......+++.+.++..-.+....=.+|.-++...|.-
T Consensus 368 IH~G~~~~~~~ll~pYLP~~~~-~~s~y~EGGalyAlGLIhA~hG~~~~~yL~~~Lk~~~~e~v~hG~cLGlGLa~mGSa 446 (929)
T KOG2062|consen 368 IHRGHENQAMKLLAPYLPKEAG-EGSGYKEGGALYALGLIHANHGRGITDYLLQQLKTAENEVVRHGACLGLGLAGMGSA 446 (929)
T ss_pred eeccccchHHHHhhhhCCccCC-CCCCccccchhhhhhccccCcCccHHHHHHHHHHhccchhhhhhhhhhccchhcccc
Confidence 3567778888888776543111 11122 122233444455555777776666543332333334455555555542
Q ss_pred HHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHhcCCh-HHHHH-HHHHHhcCCCCCCHhhHHH--HHHHHHcCCCHHHHH
Q 003829 506 DQAMSIYKRMLEAGVTPDLSTY--NAVLAALARGGMW-EQSEK-IFAEMKGGRCKPNELTYSS--LLHAYANGREIDQML 579 (793)
Q Consensus 506 ~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~-~~A~~-~~~~~~~~~~~p~~~~~~~--l~~~~~~~~~~~~a~ 579 (793)
+ .++|+.+.+.-..-+..+- ..+..+++-.|.+ .+|.+ ++.-..+. + ...+... +.-++..-|+.++|.
T Consensus 447 ~--~eiYe~lKevLy~D~AvsGEAAgi~MGl~mlGt~~~eaiedm~~Ya~ET--Q-Heki~RGl~vGiaL~~ygrqe~Ad 521 (929)
T KOG2062|consen 447 N--EEIYEKLKEVLYNDSAVSGEAAGIAMGLLMLGTANQEAIEDMLTYAQET--Q-HEKIIRGLAVGIALVVYGRQEDAD 521 (929)
T ss_pred c--HHHHHHHHHHHhccchhhhhHHHHhhhhHhhCcCcHHHHHHHHHHhhhh--h-HHHHHHHHHHhHHHHHhhhhhhhH
Confidence 2 2334443332111111111 1112223333322 22222 22222221 1 1112222 222344556666676
Q ss_pred HHHHHHHhHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHH
Q 003829 580 ALSEEIYSERAFLELKKKGFSPDI--PTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARA 657 (793)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 657 (793)
.+.+++.. .. .|-. .-..++.-+|+-.|+.....+++.-.... ...|+.-+..+.-++.-..+++..
T Consensus 522 ~lI~el~~---------dk-dpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD-~nDDVrRaAVialGFVl~~dp~~~ 590 (929)
T KOG2062|consen 522 PLIKELLR---------DK-DPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSD-VNDDVRRAAVIALGFVLFRDPEQL 590 (929)
T ss_pred HHHHHHhc---------CC-chhhhhhhHHHHHHHHhccCchhhHHHhhcccccc-cchHHHHHHHHHheeeEecChhhc
Confidence 66655432 11 1111 11234555778888888777777766553 355666666677777788899999
Q ss_pred HHHHHHHHHCCCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003829 658 EDVLREILAKGIKPDII--SYNTVIFAYCRNGRMKEASRIFSEMRD 701 (793)
Q Consensus 658 ~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~ 701 (793)
..+.+-+.+. +.|.+. +-.+|.-+|+..|+ .+|..+++-|..
T Consensus 591 ~s~V~lLses-~N~HVRyGaA~ALGIaCAGtG~-~eAi~lLepl~~ 634 (929)
T KOG2062|consen 591 PSTVSLLSES-YNPHVRYGAAMALGIACAGTGL-KEAINLLEPLTS 634 (929)
T ss_pred hHHHHHHhhh-cChhhhhhHHHHHhhhhcCCCc-HHHHHHHhhhhc
Confidence 9988888775 455543 33455566666665 789999999986
No 445
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=50.43 E-value=74 Score=30.64 Aligned_cols=58 Identities=12% Similarity=0.078 Sum_probs=31.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHH----cCC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 003829 712 NTFVASYAADSLFVEALDVVRYMIK----QGC-KPNQNTYNSIVDGYCKLNQRYEAITFVNNL 769 (793)
Q Consensus 712 ~~l~~~~~~~g~~~~A~~~~~~~~~----~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 769 (793)
..++..|...|++++|.++++.+.. .|. .+...+...+..++.+.|+.+..+.+.=++
T Consensus 182 ~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 182 LEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 4555566666666666666666542 121 112344455555666666666665554443
No 446
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.40 E-value=3.6e+02 Score=29.21 Aligned_cols=94 Identities=19% Similarity=0.200 Sum_probs=59.7
Q ss_pred HHHHhcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHHH-cCCCHHHHHHHHHHHHhHHHHHHHHHCCCCCCHHHHHHHH
Q 003829 532 AALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYA-NGREIDQMLALSEEIYSERAFLELKKKGFSPDIPTLNAMI 610 (793)
Q Consensus 532 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 610 (793)
..+.+.|.|..|.+..+-+......-|+.....+|+.|+ +..+++-.+++++... .+.....-|+-.--.+|+
T Consensus 350 ~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e------~~n~l~~~PN~~yS~AlA 423 (665)
T KOG2422|consen 350 QSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPE------NMNKLSQLPNFGYSLALA 423 (665)
T ss_pred HHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHH------hhccHhhcCCchHHHHHH
Confidence 456778899999998888887654447778888888776 6778888887776542 233333445554445555
Q ss_pred HHHHhcCC---HHHHHHHHHHHHh
Q 003829 611 SIYGRRQM---VAKTNEILHFMND 631 (793)
Q Consensus 611 ~~~~~~g~---~~~A~~~~~~~~~ 631 (793)
..|.+... -+.|...+.++..
T Consensus 424 ~f~l~~~~~~~rqsa~~~l~qAl~ 447 (665)
T KOG2422|consen 424 RFFLRKNEEDDRQSALNALLQALK 447 (665)
T ss_pred HHHHhcCChhhHHHHHHHHHHHHH
Confidence 55655444 3445555544443
No 447
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=49.85 E-value=35 Score=33.24 Aligned_cols=28 Identities=14% Similarity=0.111 Sum_probs=13.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 003829 712 NTFVASYAADSLFVEALDVVRYMIKQGC 739 (793)
Q Consensus 712 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 739 (793)
+..|....+.|++++|+.+++++.+.|+
T Consensus 261 ~~aI~~AVk~gDi~KAL~LldEAe~LG~ 288 (303)
T PRK10564 261 NQAIKQAVKKGDVDKALKLLDEAERLGS 288 (303)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 3444444455555555555555544443
No 448
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=49.05 E-value=77 Score=25.73 Aligned_cols=27 Identities=30% Similarity=0.624 Sum_probs=18.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003829 351 TYNSLISAYARDGLLEEAMELKTQMVE 377 (793)
Q Consensus 351 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 377 (793)
-|..|+..|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 356666677777777777777776665
No 449
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=48.68 E-value=3.2e+02 Score=28.37 Aligned_cols=53 Identities=17% Similarity=0.106 Sum_probs=25.0
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCChh--HHHHHHHHHHh--cCCHHHHHHHHHHHHH
Q 003829 324 YGKCRRPKEAMQVLREMKINGCLPSIV--TYNSLISAYAR--DGLLEEAMELKTQMVE 377 (793)
Q Consensus 324 ~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~li~~~~~--~g~~~~A~~~~~~m~~ 377 (793)
+...+++..|.++|+++... ++++.. .+..+..+|.. .-++++|.+.++....
T Consensus 141 l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 33556666666666666554 333322 23333333332 3345555555555443
No 450
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=48.55 E-value=2.5e+02 Score=26.71 Aligned_cols=56 Identities=13% Similarity=-0.012 Sum_probs=26.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 003829 610 ISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILA 666 (793)
Q Consensus 610 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 666 (793)
.+++...|++-++++.-.+++... +-|+..|-.=..+.+..=+.++|..-|..++.
T Consensus 237 ~QC~L~~~e~yevleh~seiL~~~-~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ 292 (329)
T KOG0545|consen 237 CQCLLKKEEYYEVLEHCSEILRHH-PGNVKAYFRRAKAHAAVWNEAEAKADLQKVLE 292 (329)
T ss_pred HHHHhhHHHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHhhcCHHHHHHHHHHHHh
Confidence 334444555555555555555442 33444444444444444445555555555544
No 451
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=47.79 E-value=1.9e+02 Score=29.04 Aligned_cols=64 Identities=14% Similarity=0.172 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003829 689 MKEASRIFSEMRDSGLVPDV----ITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYC 754 (793)
Q Consensus 689 ~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 754 (793)
.++.+.+++.+++ ..|+. ..|..+++.+...|.+++.+.+|++++..|..|-...-..+++.+-
T Consensus 119 ~eei~~~L~~li~--~IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 119 KEEILATLSDLIK--NIPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHHHh--cCchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 4577777887777 45555 4456777777778888888888888888887776666666666654
No 452
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=47.56 E-value=82 Score=28.88 Aligned_cols=33 Identities=18% Similarity=0.062 Sum_probs=20.9
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003829 704 LVPDVITYNTFVASYAADSLFVEALDVVRYMIK 736 (793)
Q Consensus 704 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 736 (793)
..|+..+|..++.++...|+.++|.+..+++..
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 456666666666666666666666666666654
No 453
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=47.52 E-value=96 Score=31.04 Aligned_cols=65 Identities=15% Similarity=0.145 Sum_probs=51.7
Q ss_pred CHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003829 653 NFARAEDVLREILAKGIKPDI----ISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYA 719 (793)
Q Consensus 653 ~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 719 (793)
-.++...++.++++. -|+. .-|..++......|.+++.+.+|++++..|-.|-...-..++..+-
T Consensus 118 p~eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 118 PKEEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred CHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 357899999999986 4563 4577888888899999999999999999999986666666666554
No 454
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=47.32 E-value=3e+02 Score=27.30 Aligned_cols=24 Identities=25% Similarity=0.328 Sum_probs=13.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHH
Q 003829 319 ALLDVYGKCRRPKEAMQVLREMKI 342 (793)
Q Consensus 319 ~li~~~~~~g~~~~A~~~~~~~~~ 342 (793)
.|..+.-+.|+..+|.+.++++.+
T Consensus 280 RLAMCARklGrlrEA~K~~RDL~k 303 (556)
T KOG3807|consen 280 RLAMCARKLGRLREAVKIMRDLMK 303 (556)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhh
Confidence 344444456666666666666544
No 455
>PRK10941 hypothetical protein; Provisional
Probab=47.07 E-value=2.9e+02 Score=27.04 Aligned_cols=59 Identities=20% Similarity=0.156 Sum_probs=44.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003829 677 NTVIFAYCRNGRMKEASRIFSEMRDSGLVPD-VITYNTFVASYAADSLFVEALDVVRYMIKQ 737 (793)
Q Consensus 677 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 737 (793)
+.+-.+|.+.++++.|+++.+.++. +.|+ ..-+.--+-.|.+.|.+..|..=++..++.
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~--l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQ--FDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 4555677888888888888888888 5554 455666777788888888888888888764
No 456
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=46.58 E-value=3e+02 Score=27.22 Aligned_cols=56 Identities=13% Similarity=0.227 Sum_probs=29.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003829 679 VIFAYCRNGRMKEASRIFSEMRDSGLVPDV---ITYNTFVASYAADSLFVEALDVVRYMIK 736 (793)
Q Consensus 679 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 736 (793)
+..+..+.|+..+|.+.|..+.+. .|=. .+...|+.++....-+.+...++-+.-+
T Consensus 281 LAMCARklGrlrEA~K~~RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavLakYDd 339 (556)
T KOG3807|consen 281 LAMCARKLGRLREAVKIMRDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLAKYDD 339 (556)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 344445566777777666666552 1211 2335566666666555555555554433
No 457
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=46.01 E-value=2.9e+02 Score=26.85 Aligned_cols=24 Identities=17% Similarity=0.048 Sum_probs=11.1
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHH
Q 003829 637 SLTTYNTLMYMYSRSENFARAEDV 660 (793)
Q Consensus 637 ~~~~~~~l~~~~~~~g~~~~A~~~ 660 (793)
++.....+...|.+.|++.+|+..
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~H 112 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERH 112 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHH
Confidence 344444555555555555555443
No 458
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=45.56 E-value=4.7e+02 Score=29.09 Aligned_cols=25 Identities=20% Similarity=0.205 Sum_probs=17.6
Q ss_pred ccHHHHHHHhccCCChHHHHHHHHH
Q 003829 134 ADLLGIVKGLGFHKKTDLALDVFEW 158 (793)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~A~~~~~~ 158 (793)
..+-..+..+..+|+++.|..++..
T Consensus 149 p~FW~~v~~lvlrG~~~~a~~lL~~ 173 (566)
T PF07575_consen 149 PDFWDYVQRLVLRGLFDQARQLLRL 173 (566)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHH-T
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHh
Confidence 3566678888888888888888843
No 459
>PRK12798 chemotaxis protein; Reviewed
Probab=45.29 E-value=3.8e+02 Score=27.91 Aligned_cols=239 Identities=11% Similarity=0.018 Sum_probs=0.0
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHHH-cCCCHHHHHHHHHHHHhH
Q 003829 510 SIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYA-NGREIDQMLALSEEIYSE 588 (793)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~ 588 (793)
++++.+...+..++...--.-.-.-.-.|+.+++.+.+..+.....++....+..|+.+-. ...+...|+.+++.+
T Consensus 98 ~vlr~L~~~d~~~~~d~~L~~g~laY~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~a--- 174 (421)
T PRK12798 98 ATLRKLLARDKLGNFDQRLADGALAYLSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQA--- 174 (421)
T ss_pred HHHHHHHHcCCCChhhHHHHHHHHHHHcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHH---
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHccCCHHHHHHHHHHHH
Q 003829 589 RAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTT---YNTLMYMYSRSENFARAEDVLREIL 665 (793)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~ 665 (793)
.+..-|--.....+..-+......|+.+++..+-..-... +..++.. +..+..++.+.++-.+-..+.+.+.
T Consensus 175 ----RLlaPGTLvEEAALRRsi~la~~~g~~~rf~~la~~Y~rR-F~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls 249 (421)
T PRK12798 175 ----RLLAPGTLVEEAALRRSLFIAAQLGDADKFEALARNYLRR-FRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILS 249 (421)
T ss_pred ----HHhCCchHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHH-hccCchHHHHHHHHHHHHHhccccccHHHHHHHHH
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 003829 666 AKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRD---SGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPN 742 (793)
Q Consensus 666 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 742 (793)
.....--...|..+...-.-.|+.+-|...-++... .+-.+.......-..+-.-..++++|.+.+..+-...+.+.
T Consensus 250 ~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~~~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~~~L~~~ 329 (421)
T PRK12798 250 FMDPERQRELYLRIARAALIDGKTELARFASERALKLADPDSADAARARLYRGAALVASDDAESALEELSQIDRDKLSER 329 (421)
T ss_pred hcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHccCcccHHHHHHHHhcCChhhCChh
Q ss_pred HHHHHHHHHHHHcc
Q 003829 743 QNTYNSIVDGYCKL 756 (793)
Q Consensus 743 ~~~~~~l~~~~~~~ 756 (793)
......-+......
T Consensus 330 Dr~Ll~AA~~va~~ 343 (421)
T PRK12798 330 DRALLEAARSVARQ 343 (421)
T ss_pred hHHHHHHHHHHHHH
No 460
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=44.99 E-value=91 Score=20.74 Aligned_cols=28 Identities=11% Similarity=0.173 Sum_probs=11.8
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 003829 397 AGKDESAMKVFEEMRSAGCKPNICTFNA 424 (793)
Q Consensus 397 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 424 (793)
.|-+.++..++++|.+.|+..+...+..
T Consensus 15 ~GlI~~~~~~l~~l~~~g~~is~~l~~~ 42 (48)
T PF11848_consen 15 RGLISEVKPLLDRLQQAGFRISPKLIEE 42 (48)
T ss_pred cCChhhHHHHHHHHHHcCcccCHHHHHH
Confidence 3444444444444444444444443333
No 461
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=44.88 E-value=92 Score=20.73 Aligned_cols=32 Identities=22% Similarity=0.312 Sum_probs=19.9
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003829 360 ARDGLLEEAMELKTQMVEIGITPDVFTYTTLL 391 (793)
Q Consensus 360 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 391 (793)
.+.|-+.++...+++|.+.|+..+...|..++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 35566666666677776666666655555544
No 462
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=43.63 E-value=1.5e+02 Score=22.85 Aligned_cols=67 Identities=16% Similarity=0.191 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHcCCCHHHHH
Q 003829 507 QAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQML 579 (793)
Q Consensus 507 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 579 (793)
.+.++++.+.++|+- +......+-.+-...|+.+.|..++..+. . .+..|..++.++...|...-|.
T Consensus 20 ~~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-r----g~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 20 KTRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-Q----KEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred hHHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-c----CCcHHHHHHHHHHHcCchhhhh
Confidence 355777888888765 55555554444446799999999999987 4 3456778888888777765543
No 463
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=43.55 E-value=6.5e+02 Score=30.14 Aligned_cols=121 Identities=14% Similarity=0.164 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HH
Q 003829 385 FTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPN----ICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDI----VT 456 (793)
Q Consensus 385 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~ 456 (793)
..|..+++.+-+.+-.+.+.++-..+++. ..+| ..+++.+.+.....|.+.+|.+.+-. .||. ..
T Consensus 984 hYYlkv~rlle~hn~~E~vcQlA~~AIe~-l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~------npdserrrdc 1056 (1480)
T KOG4521|consen 984 HYYLKVVRLLEEHNHAEEVCQLAVKAIEN-LPDDNPSVALISTTVFNHHLDLGHWFQAYKAILR------NPDSERRRDC 1056 (1480)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHh-CCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHc------CCcHHHHHHH
Confidence 34667778888888888888887776654 2222 34567777777888888888776543 3343 34
Q ss_pred HHHHHHHHHhCCChH------------HHHH-HHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 003829 457 WNTLLAVFGQNGMDS------------EVSG-VFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIY 512 (793)
Q Consensus 457 ~~~l~~~~~~~~~~~------------~a~~-~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 512 (793)
...++-.++++|..+ +... +++..-+....-....|..|-..+...+++.+|-.++
T Consensus 1057 LRqlvivLfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvM 1125 (1480)
T KOG4521|consen 1057 LRQLVIVLFECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVM 1125 (1480)
T ss_pred HHHHHHHHHhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHH
Confidence 555666666666554 3333 3333323322223345666666677777777665443
No 464
>KOG3895 consensus Synaptic vesicle protein Synapsin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=43.54 E-value=1.3e+02 Score=29.76 Aligned_cols=8 Identities=63% Similarity=0.721 Sum_probs=3.2
Q ss_pred CCCCCCCC
Q 003829 1 MAQNLSLP 8 (793)
Q Consensus 1 ~~~~~~~~ 8 (793)
||+.+.-|
T Consensus 390 maq~l~~~ 397 (488)
T KOG3895|consen 390 MAQLLTRP 397 (488)
T ss_pred hhhccCCC
Confidence 44444333
No 465
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=43.49 E-value=83 Score=30.58 Aligned_cols=49 Identities=16% Similarity=0.188 Sum_probs=23.2
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003829 685 RNGRMKEASRIFSEMRDSGLVPD-VITYNTFVASYAADSLFVEALDVVRYMI 735 (793)
Q Consensus 685 ~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 735 (793)
+.|+.++|.++|+.++. +.|+ +.++..++.......++-+|-++|-+++
T Consensus 128 ~~Gk~ekA~~lfeHAla--laP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~AL 177 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHALA--LAPTNPQILIEMGQFREMHNEIVEADQCYVKAL 177 (472)
T ss_pred hccchHHHHHHHHHHHh--cCCCCHHHHHHHhHHHHhhhhhHhhhhhhheee
Confidence 44555555555555555 3332 2344444444444444445555554444
No 466
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=43.26 E-value=23 Score=40.62 Aligned_cols=14 Identities=57% Similarity=0.997 Sum_probs=6.6
Q ss_pred CCCCCCCCCCCCCC
Q 003829 6 SLPLLLPTPPPAKP 19 (793)
Q Consensus 6 ~~~~~~~~p~~~~~ 19 (793)
+|||--||||||||
T Consensus 3 ~lppg~pppppppp 16 (2365)
T COG5178 3 SLPPGNPPPPPPPP 16 (2365)
T ss_pred CCCCCCCcccccCC
Confidence 45554444444433
No 467
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=43.22 E-value=5.6e+02 Score=29.29 Aligned_cols=109 Identities=12% Similarity=-0.030 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChHHHHHHH
Q 003829 654 FARAEDVLREILAKGIKPDIISYNTVIFAY-CRNGRMKEASRIFSEMRDSGLVPDVI-TYNTFVASYAADSLFVEALDVV 731 (793)
Q Consensus 654 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~ 731 (793)
+..|...|.+.......+...+.......+ .-.++.+.++.+++.....|.. +.. .|...+..-...|+...+..++
T Consensus 442 F~~A~~eLt~~~~~~~Dt~~~~~q~wA~~E~sl~~nmd~~R~iWn~imty~~~-~iag~Wle~~~lE~~~g~~~~~R~~~ 520 (881)
T KOG0128|consen 442 FNHAWEELTELYGDQLDTRTEVLQLWAQVEASLLKNMDKAREIWNFIMTYGGG-SIAGKWLEAINLEREYGDGPSARKVL 520 (881)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhchhhhhHhhhccccCCcc-hHHHHHHHHHhHHHHhCCchhHHHHH
Confidence 556666666655432233333333333333 3457899999999998876543 333 5666666666778888888888
Q ss_pred HHHHHcCCCCC--HHHHHHHHHHHHccCCHHHHH
Q 003829 732 RYMIKQGCKPN--QNTYNSIVDGYCKLNQRYEAI 763 (793)
Q Consensus 732 ~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~ 763 (793)
+.+...-..|+ ..++..+...-...|.++.+.
T Consensus 521 R~ay~~~~~~~~~~ev~~~~~r~Ere~gtl~~~~ 554 (881)
T KOG0128|consen 521 RKAYSQVVDPEDALEVLEFFRRFEREYGTLESFD 554 (881)
T ss_pred HHHHhcCcCchhHHHHHHHHHHHHhccccHHHHh
Confidence 88875434443 223333333333445555443
No 468
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=42.69 E-value=3.6e+02 Score=26.91 Aligned_cols=135 Identities=17% Similarity=0.121 Sum_probs=74.7
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCCC
Q 003829 309 GFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKIN-GCLPSIVTYNSLISAYARDGLLEEAMELKTQMVE----IGITPD 383 (793)
Q Consensus 309 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~~~ 383 (793)
.+..|...++.|... +..++++-.+..++..+. |-.--...+......||+.|+.+.|++.+.+..+ .|...|
T Consensus 65 ~i~~D~~~l~~m~~~--neeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiD 142 (393)
T KOG0687|consen 65 VIKLDQDLLNSMKKA--NEEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKID 142 (393)
T ss_pred ceeccHHHHHHHHHh--hHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchh
Confidence 344555555555432 222333434444444333 2222334677778889999999999888766543 466777
Q ss_pred HHHHHHHHHH-HHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003829 384 VFTYTTLLSG-FEKAGKDESAMKVFEEMRSAGCKPNI----CTFNALIKMHGNRGNFVEMMKVFDEINK 447 (793)
Q Consensus 384 ~~~~~~li~~-~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 447 (793)
...+..-+.. |....-+.+-++..+.+.+.|...+. .+|..+-. ....++.+|-.+|-+...
T Consensus 143 Vvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gly~--msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 143 VVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGLYC--MSVRNFKEAADLFLDSVS 209 (393)
T ss_pred hHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHHHH--HHHHhHHHHHHHHHHHcc
Confidence 7665543333 33444455566666667777755443 23332222 244567777777766543
No 469
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=42.57 E-value=1.6e+02 Score=32.12 Aligned_cols=91 Identities=10% Similarity=0.038 Sum_probs=56.8
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCChH------HHHHHHHHHHHcCCCCChhHHHHH
Q 003829 284 TLISCCRRGSLHEEAAGVFEEMKLAG--FSPDKVTYNALLDVYGKCRRPK------EAMQVLREMKINGCLPSIVTYNSL 355 (793)
Q Consensus 284 ~l~~~~~~~~~~~~A~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~------~A~~~~~~~~~~~~~~~~~~~~~l 355 (793)
+++.+|...|++..+.++++.....+ -+.=...||..|+-+.+.|.++ .|.++++... ..-|..||..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 78889999999999999988887652 2223456788888888888753 3444444433 34466677777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 003829 356 ISAYARDGLLEEAMELKTQMVE 377 (793)
Q Consensus 356 i~~~~~~g~~~~A~~~~~~m~~ 377 (793)
+.+-..--.-.-..-++.+++.
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i~ 131 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELIH 131 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHHH
Confidence 6665443333333334444443
No 470
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=42.48 E-value=2e+02 Score=23.82 Aligned_cols=64 Identities=11% Similarity=0.131 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHH----cC-CCCC-HHHHHHH----HHHHHccCCHHHHHHHHHHHhhC
Q 003829 709 ITYNTFVASYAADSLFVEALDVVRYMIK----QG-CKPN-QNTYNSI----VDGYCKLNQRYEAITFVNNLSKL 772 (793)
Q Consensus 709 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~-~~p~-~~~~~~l----~~~~~~~g~~~~A~~~~~~~~~~ 772 (793)
..+..|..++...|++++++.-.+..+. .| +..| -..|... +.++-..|+.++|...|+.+-++
T Consensus 56 ~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 56 FCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 4456667777788888776665555542 12 3334 2333222 23566778888888888776543
No 471
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=41.63 E-value=2e+02 Score=28.69 Aligned_cols=95 Identities=14% Similarity=-0.013 Sum_probs=47.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCC---CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-HHHHHHHH
Q 003829 605 TLNAMISIYGRRQMVAKTNEILHFMNDSGF---TPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPD-IISYNTVI 680 (793)
Q Consensus 605 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~ 680 (793)
.|--=++-|.+..++..|...|.+-++... ..+.+.|+.=..+....|++..|+.=-....+. .|+ ...|.--.
T Consensus 83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~--~P~h~Ka~~R~A 160 (390)
T KOG0551|consen 83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL--KPTHLKAYIRGA 160 (390)
T ss_pred HHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc--Ccchhhhhhhhh
Confidence 444455555666666666666665554321 122333444444444455666665555555543 333 23333334
Q ss_pred HHHHHcCCHHHHHHHHHHHHH
Q 003829 681 FAYCRNGRMKEASRIFSEMRD 701 (793)
Q Consensus 681 ~~~~~~g~~~~A~~~~~~~~~ 701 (793)
.|+....++++|..+.++..+
T Consensus 161 kc~~eLe~~~~a~nw~ee~~~ 181 (390)
T KOG0551|consen 161 KCLLELERFAEAVNWCEEGLQ 181 (390)
T ss_pred HHHHHHHHHHHHHHHHhhhhh
Confidence 445555555555555555443
No 472
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=41.46 E-value=7e+02 Score=29.91 Aligned_cols=156 Identities=13% Similarity=0.083 Sum_probs=92.1
Q ss_pred HHHhcCCHHHHHHHHHHHHhC-----------------------CCCCC-----HHHHHHHHHHHHccCCHHHHHHHHHH
Q 003829 612 IYGRRQMVAKTNEILHFMNDS-----------------------GFTPS-----LTTYNTLMYMYSRSENFARAEDVLRE 663 (793)
Q Consensus 612 ~~~~~g~~~~A~~~~~~~~~~-----------------------~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~ 663 (793)
+|...|...+|++.|.+...- |-.|. ..-|...+..+.+.+..+.+.++-..
T Consensus 929 ~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E~vcQlA~~ 1008 (1480)
T KOG4521|consen 929 AYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAEEVCQLAVK 1008 (1480)
T ss_pred eeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 466677778887777665421 21121 23366777888888999999999888
Q ss_pred HHHCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChHHH--------
Q 003829 664 ILAKGIKPD----IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDV----ITYNTFVASYAADSLFVEA-------- 727 (793)
Q Consensus 664 ~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A-------- 727 (793)
+++. ++++ ..+++++.+-....|.+-+|.+.+-+ .||. .....++-.++..|.++.-
T Consensus 1009 AIe~-l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~------npdserrrdcLRqlvivLfecg~l~~L~~fpfigl 1081 (1480)
T KOG4521|consen 1009 AIEN-LPDDNPSVALISTTVFNHHLDLGHWFQAYKAILR------NPDSERRRDCLRQLVIVLFECGELEALATFPFIGL 1081 (1480)
T ss_pred HHHh-CCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHc------CCcHHHHHHHHHHHHHHHHhccchHHHhhCCccch
Confidence 8875 3433 34566666666677777777655432 3343 4567777788888876543
Q ss_pred ----HH-HHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHH-HHHHHHhhCCCC
Q 003829 728 ----LD-VVRYMIKQGCKPN-QNTYNSIVDGYCKLNQRYEAI-TFVNNLSKLDPH 775 (793)
Q Consensus 728 ----~~-~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~~~ 775 (793)
.. +++..-. ...-+ ..-|+.|-..+...+++.+|- -+|+-+...+.+
T Consensus 1082 ~~eve~~l~esaaR-s~~~mk~nyYelLYAfh~~RhN~RkaatvMYEyamrl~se 1135 (1480)
T KOG4521|consen 1082 EQEVEDFLRESAAR-SSPSMKKNYYELLYAFHVARHNFRKAATVMYEYAMRLESE 1135 (1480)
T ss_pred HHHHHHHHHHHHhh-cCccccccHHHHHHHHHHhhcchhHHHHHHHHHHHHhccc
Confidence 23 2222222 12222 334555555555667766654 455555555433
No 473
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=41.16 E-value=3e+02 Score=33.13 Aligned_cols=159 Identities=10% Similarity=0.055 Sum_probs=103.2
Q ss_pred HHHhcCCHHHHHH------HHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH-------HCCCCCCHHHHHH
Q 003829 612 IYGRRQMVAKTNE------ILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREIL-------AKGIKPDIISYNT 678 (793)
Q Consensus 612 ~~~~~g~~~~A~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~~~~~ 678 (793)
.....|.+.+|.+ ++......-.+.....|..|...+.+.|+.++|+..-.+.. ...-.-+...|..
T Consensus 941 ~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~n 1020 (1236)
T KOG1839|consen 941 EALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGN 1020 (1236)
T ss_pred hhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhH
Confidence 3344566666666 55533222225566678889999999999999988766543 1122223456666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHC-----CC-CCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHcC----CC---CCHH
Q 003829 679 VIFAYCRNGRMKEASRIFSEMRDS-----GL-VPDV-ITYNTFVASYAADSLFVEALDVVRYMIKQG----CK---PNQN 744 (793)
Q Consensus 679 l~~~~~~~g~~~~A~~~~~~~~~~-----~~-~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~---p~~~ 744 (793)
+...+...++...|...+.+.... |. .|.. .+++.+-..+...++++.|+++.+.+.+.. .+ +...
T Consensus 1021 lal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~ 1100 (1236)
T KOG1839|consen 1021 LALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETAL 1100 (1236)
T ss_pred HHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhh
Confidence 666667777888898888888752 32 4544 444566555666688999999999987531 11 1356
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHh
Q 003829 745 TYNSIVDGYCKLNQRYEAITFVNNLS 770 (793)
Q Consensus 745 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 770 (793)
++..+...+.-.|++..|....+...
T Consensus 1101 ~~~~~a~l~~s~~dfr~al~~ek~t~ 1126 (1236)
T KOG1839|consen 1101 SYHALARLFESMKDFRNALEHEKVTY 1126 (1236)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHhhHH
Confidence 67777777777777777766665543
No 474
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=41.07 E-value=3.7e+02 Score=26.66 Aligned_cols=24 Identities=13% Similarity=-0.020 Sum_probs=13.8
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHH
Q 003829 284 TLISCCRRGSLHEEAAGVFEEMKL 307 (793)
Q Consensus 284 ~l~~~~~~~~~~~~A~~~~~~~~~ 307 (793)
..+..+...|++..|.+++.+..+
T Consensus 132 ~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 132 SRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Confidence 344445556666666666655544
No 475
>PRK14700 recombination factor protein RarA; Provisional
Probab=40.99 E-value=3.7e+02 Score=26.61 Aligned_cols=95 Identities=14% Similarity=0.054 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHc---CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-----hHHHHHHHHHHHHcCCCCCHHH
Q 003829 674 ISYNTVIFAYCRN---GRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSL-----FVEALDVVRYMIKQGCKPNQNT 745 (793)
Q Consensus 674 ~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-----~~~A~~~~~~~~~~~~~p~~~~ 745 (793)
..+.-++.++.++ .|.+.|+-++-+|++.|-.|....-..++-++...|. ...|...++....-|++--...
T Consensus 124 d~HYd~iSAf~KSiRGSDpDAAlYyLArml~~GEDp~~IaRRLii~AsEDIGlAdP~al~~a~aa~~A~~~iG~PEa~i~ 203 (300)
T PRK14700 124 KEFYEQLSAFHKSVRGTDPDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIGNADPQALRVAMDAWNAYEKLGMPEGRLV 203 (300)
T ss_pred chhHHHHHHHHHHhhcCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCChHHHHH
Confidence 3444556666544 6899999999999999988877777777778888885 3344555555555675322333
Q ss_pred HHHHHHHHHccCCHHHHHHHHHH
Q 003829 746 YNSIVDGYCKLNQRYEAITFVNN 768 (793)
Q Consensus 746 ~~~l~~~~~~~g~~~~A~~~~~~ 768 (793)
....+--++..-+-..+...+.+
T Consensus 204 La~aviyLA~aPKSNs~y~A~~~ 226 (300)
T PRK14700 204 LAQAAIYLAVAPKSNACYKALAQ 226 (300)
T ss_pred HHHHHHHHHcCCCchHHHHHHHH
Confidence 33333334444444443333333
No 476
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=40.99 E-value=56 Score=31.92 Aligned_cols=30 Identities=20% Similarity=0.214 Sum_probs=18.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 003829 317 YNALLDVYGKCRRPKEAMQVLREMKINGCL 346 (793)
Q Consensus 317 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 346 (793)
|+..|....+.||+++|+++++|.++.|..
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 345666666666666666666666665554
No 477
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=40.88 E-value=2.2e+02 Score=23.91 Aligned_cols=44 Identities=9% Similarity=0.056 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHH
Q 003829 725 VEALDVVRYMIKQGCKPN-QNTYNSIVDGYCKLNQRYEAITFVNN 768 (793)
Q Consensus 725 ~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 768 (793)
+++.++|..|..+|+--. +..|...+..+...|++.+|.++++.
T Consensus 80 ~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~~ 124 (125)
T smart00777 80 DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQL 124 (125)
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 557889999998877555 66778888899999999999999874
No 478
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=40.46 E-value=3.6e+02 Score=26.27 Aligned_cols=98 Identities=19% Similarity=0.208 Sum_probs=55.0
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHh----CCCCCCH
Q 003829 564 SLLHAYANGREIDQMLALSEEIYSERAFLELKKKGFSPDIPTLNAM-ISIYGRRQMVAKTNEILHFMND----SGFTPSL 638 (793)
Q Consensus 564 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~ 638 (793)
.++..+.+.|.+.+|+.+...+.. ++++..-.++..+...+ -..|....++.++..-+..... .-.||..
T Consensus 130 Kli~l~y~~~~YsdalalIn~ll~-----ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpql 204 (421)
T COG5159 130 KLIYLLYKTGKYSDALALINPLLH-----ELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQL 204 (421)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHH-----HHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHH
Confidence 466778888999999888776543 45555545543322221 2244444555555444443332 1345554
Q ss_pred HHHHHHHHH--HHccCCHHHHHHHHHHHHH
Q 003829 639 TTYNTLMYM--YSRSENFARAEDVLREILA 666 (793)
Q Consensus 639 ~~~~~l~~~--~~~~g~~~~A~~~~~~~~~ 666 (793)
..---|+++ .|...++.-|..+|-+..+
T Consensus 205 qa~lDL~sGIlhcdd~dyktA~SYF~Ea~E 234 (421)
T COG5159 205 QAQLDLLSGILHCDDRDYKTASSYFIEALE 234 (421)
T ss_pred HHHHHHhccceeeccccchhHHHHHHHHHh
Confidence 444445544 3455567778887777665
No 479
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=40.08 E-value=1.8e+02 Score=27.93 Aligned_cols=59 Identities=10% Similarity=-0.006 Sum_probs=36.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH----CCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 003829 676 YNTVIFAYCRNGRMKEASRIFSEMRD----SGLV-PDVITYNTFVASYAADSLFVEALDVVRYM 734 (793)
Q Consensus 676 ~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 734 (793)
...++.-|...|++++|.++|+.+.. .|.. +...+...+..++...|+.++.+.+.-++
T Consensus 181 ~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 181 SLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 34556667777777777777777753 1221 12245566666777777777766665544
No 480
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=39.87 E-value=61 Score=18.52 Aligned_cols=29 Identities=17% Similarity=0.044 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 003829 757 NQRYEAITFVNNLSKLDPHVTKELECKLSD 786 (793)
Q Consensus 757 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 786 (793)
|+.+.|..+++++++..| .+...+...++
T Consensus 1 ~~~~~~r~i~e~~l~~~~-~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFP-KSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCC-CChHHHHHHHH
No 481
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=39.49 E-value=6e+02 Score=28.62 Aligned_cols=200 Identities=14% Similarity=0.108 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHH-------HHHHHHHHHHhcCCh
Q 003829 261 NKIMALVEGMKSAGVKPD---SYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKV-------TYNALLDVYGKCRRP 330 (793)
Q Consensus 261 ~~a~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~~~~~-------~~~~li~~~~~~g~~ 330 (793)
++-...+.+|.++-=.|+ ..+...++-.|....+++...++.+.+++..-..++. .|.-.++---+-||-
T Consensus 180 ~~l~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDR 259 (1226)
T KOG4279|consen 180 DQLNDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDR 259 (1226)
T ss_pred HHHHHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccH
Q ss_pred HHHHHHHHHHHHcCCCCChhHHHHHHHHHHh---------cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Q 003829 331 KEAMQVLREMKINGCLPSIVTYNSLISAYAR---------DGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDE 401 (793)
Q Consensus 331 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 401 (793)
++|+...-.+.+.........|+...+.|-. .+..+.|.+.|++.-+. .|+..+-..+...+...|..=
T Consensus 260 akAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFev--eP~~~sGIN~atLL~aaG~~F 337 (1226)
T KOG4279|consen 260 AKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEV--EPLEYSGINLATLLRAAGEHF 337 (1226)
T ss_pred HHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhcc--CchhhccccHHHHHHHhhhhc
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 003829 402 SAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMK 481 (793)
Q Consensus 402 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 481 (793)
+--.-++.+--. |-..+.+.|.++...++|+-.. .+.+-.-.+++.+|.+.-+.|.
T Consensus 338 ens~Elq~Igmk-----------Ln~LlgrKG~leklq~YWdV~~-------------y~~asVLAnd~~kaiqAae~mf 393 (1226)
T KOG4279|consen 338 ENSLELQQIGMK-----------LNSLLGRKGALEKLQEYWDVAT-------------YFEASVLANDYQKAIQAAEMMF 393 (1226)
T ss_pred cchHHHHHHHHH-----------HHHHhhccchHHHHHHHHhHHH-------------hhhhhhhccCHHHHHHHHHHHh
Q ss_pred HcCCC
Q 003829 482 RAGFI 486 (793)
Q Consensus 482 ~~~~~ 486 (793)
+...+
T Consensus 394 KLk~P 398 (1226)
T KOG4279|consen 394 KLKPP 398 (1226)
T ss_pred ccCCc
No 482
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=39.44 E-value=69 Score=19.20 Aligned_cols=28 Identities=14% Similarity=0.325 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003829 687 GRMKEASRIFSEMRDSGLVPDVITYNTFVA 716 (793)
Q Consensus 687 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 716 (793)
..++.|..+|++.+. +.|+..+|...+.
T Consensus 1 kE~dRAR~IyeR~v~--~hp~~k~WikyAk 28 (32)
T PF02184_consen 1 KEFDRARSIYERFVL--VHPEVKNWIKYAK 28 (32)
T ss_pred ChHHHHHHHHHHHHH--hCCCchHHHHHHH
No 483
>PRK13342 recombination factor protein RarA; Reviewed
Probab=39.12 E-value=4.9e+02 Score=27.48 Aligned_cols=170 Identities=13% Similarity=0.073 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHhC---CC-CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 003829 259 PWNKIMALVEGMKSA---GV-KPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAM 334 (793)
Q Consensus 259 ~~~~a~~~~~~~~~~---~~-~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 334 (793)
..++...+++..... |+ ..+......++..+ .|+...+..+++.+... ...=..+...
T Consensus 152 s~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~----------------~~~It~~~v~ 213 (413)
T PRK13342 152 SEEDIEQLLKRALEDKERGLVELDDEALDALARLA--NGDARRALNLLELAALG----------------VDSITLELLE 213 (413)
T ss_pred CHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHc----------------cCCCCHHHHH
Q ss_pred HHHHHHHHcCCCCChhHHHHHHHHHHhc---CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-----CHHHHHHH
Q 003829 335 QVLREMKINGCLPSIVTYNSLISAYARD---GLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAG-----KDESAMKV 406 (793)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-----~~~~a~~~ 406 (793)
+++...... ...+...+..++.++.+. ++.+.|+..+..|.+.|..|....-..++.++-..| ...-|...
T Consensus 214 ~~~~~~~~~-~d~~~~~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig~a~~~~~~~~~~~ 292 (413)
T PRK13342 214 EALQKRAAR-YDKDGDEHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIGLADPNALQVAVAA 292 (413)
T ss_pred HHHhhhhhc-cCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcccCHHHHHHHHHH
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003829 407 FEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINK 447 (793)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 447 (793)
++.....|.+.........+-.++..-+-..+...++...+
T Consensus 293 ~~~~~~~g~pe~~~~l~~~~~~l~~~pksn~~~~a~~~a~~ 333 (413)
T PRK13342 293 ADAVERIGMPEGRIALAQAVIYLALAPKSNAAYTAINAALA 333 (413)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHHHcCCCccHHHHHHHHHHH
No 484
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=38.47 E-value=4e+02 Score=26.27 Aligned_cols=284 Identities=16% Similarity=0.176 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHH--HHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 003829 310 FSPDKVTYNALLD--VYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTY 387 (793)
Q Consensus 310 ~~~~~~~~~~li~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~ 387 (793)
+.+.+..++-||+ .|...+--++..+++.-+.- ..++...-.+++.+..-.+ |..|....-
T Consensus 107 i~~~~qvf~KliRRykyLeK~fE~e~~k~Llflk~--F~e~Er~KLA~~Tal~l~n---------------Gt~~~tvl~ 169 (412)
T KOG2297|consen 107 IRNSVQVFQKLIRRYKYLEKNFENEMRKFLLFLKL--FEENERKKLAMLTALLLSN---------------GTLPATVLQ 169 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--cCHHHHHHHHHHHHHHHhC---------------CCCCHHHHH
Q ss_pred HHHHHHHHHcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 003829 388 TTLLSGFEKAG-KDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQ 466 (793)
Q Consensus 388 ~~li~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 466 (793)
..+-..+.+.| -..-|.++|+..+ .....+.++..+.+.+.-+.-+++| +|+..+-..+...+..
T Consensus 170 ~L~~d~LVkeGi~l~F~~~lFk~~~------~Ek~i~~lis~Lrkg~md~rLmeff--------Ppnkrs~E~Fak~Ft~ 235 (412)
T KOG2297|consen 170 SLLNDNLVKEGIALSFAVKLFKEWL------VEKDINDLISSLRKGKMDDRLMEFF--------PPNKRSVEHFAKYFTD 235 (412)
T ss_pred HHHHhhHHHHhHHHHHHHHHHHHHH------hhccHHHHHHHHHhcChHhHHHHhc--------CCcchhHHHHHHHHhH
Q ss_pred CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 003829 467 NGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKI 546 (793)
Q Consensus 467 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 546 (793)
.|--+-..-.-.++... .-...-..|..-..+...+++.....++-.+..--|+......+-++.....+|.+-.++
T Consensus 236 agL~elvey~~~q~~~~---a~kElq~~L~~q~s~e~p~~evi~~VKee~k~~nlPe~eVi~ivWs~iMsaveWnKkeel 312 (412)
T KOG2297|consen 236 AGLKELVEYHRNQQSEG---ARKELQKELQEQVSEEDPVKEVILYVKEEMKRNNLPETEVIGIVWSGIMSAVEWNKKEEL 312 (412)
T ss_pred hhHHHHHHHHHHHHHHH---HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCceEEeeeHhhhhHHHhhchHHHH
Q ss_pred HHHHhcCCCCCCHhhHHHHHHHHHcCCCHHHH------HHHHHHHHhHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 003829 547 FAEMKGGRCKPNELTYSSLLHAYANGREIDQM------LALSEEIYSERAFLELKKKGFSPDIPTLNAMISIYGRRQMVA 620 (793)
Q Consensus 547 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 620 (793)
..+-.-. ...+|.-|+.+++..|+.+.. ...|+.+.-..+|.++...-...++-+=..++.-|.......
T Consensus 313 va~qalr----hlK~yaPLL~af~s~g~sEL~Ll~KvQe~CYen~~fMKaFqkiV~lfYk~dVLsEe~IL~Wyk~gh~~K 388 (412)
T KOG2297|consen 313 VAEQALR----HLKQYAPLLAAFCSQGQSELELLLKVQEYCYENIHFMKAFQKIVVLFYKADVLSEETILKWYKEGHVAK 388 (412)
T ss_pred HHHHHHH----HHHhhhHHHHHHhcCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhccccc
Q ss_pred HHHHHHHHHHh
Q 003829 621 KTNEILHFMND 631 (793)
Q Consensus 621 ~A~~~~~~~~~ 631 (793)
.-..+++.|..
T Consensus 389 Gk~~Fleqmkk 399 (412)
T KOG2297|consen 389 GKSVFLEQMKK 399 (412)
T ss_pred cHHHHHHHHHH
No 485
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=37.89 E-value=7.6e+02 Score=29.34 Aligned_cols=274 Identities=11% Similarity=0.027 Sum_probs=0.0
Q ss_pred HHHhccCCHHHHHHHHHHHHHC------CCCCCHHHHHHHHHHHHhcCC---hHHHHHHHHHHhcCCCCCCHhhHHHHHH
Q 003829 497 SAYSRCGSFDQAMSIYKRMLEA------GVTPDLSTYNAVLAALARGGM---WEQSEKIFAEMKGGRCKPNELTYSSLLH 567 (793)
Q Consensus 497 ~~~~~~g~~~~a~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 567 (793)
+++...+.++.|...|+++... |...--..--+++.--...|+ +++|+.-|+.+... ..-+.-|..-.-
T Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 560 (932)
T PRK13184 483 DAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGG--VGAPLEYLGKAL 560 (932)
T ss_pred HHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCC--CCCchHHHhHHH
Q ss_pred HHHcCCCHHHHHHHHHHHHh------------------------------------------------------------
Q 003829 568 AYANGREIDQMLALSEEIYS------------------------------------------------------------ 587 (793)
Q Consensus 568 ~~~~~~~~~~a~~~~~~~~~------------------------------------------------------------ 587 (793)
.|.+.|++++-++-+.-.+.
T Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 640 (932)
T PRK13184 561 VYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREALVFMLLALWIAPEKISSREEEKFLEILYHK 640 (932)
T ss_pred HHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHhh
Q ss_pred --------------------------------HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 003829 588 --------------------------------ERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFT 635 (793)
Q Consensus 588 --------------------------------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 635 (793)
.-.-.-.......++-.+.....-..+..|.++-+.+..+.+.+. +.
T Consensus 641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 719 (932)
T PRK13184 641 QQATLFCQLDKTPLQFRSSKMELFLSFWSGFTPFLPELFQRAWDLRDYRALADIFYVACDLGNWEFFSQFSDILAEV-SD 719 (932)
T ss_pred ccCCceeeccCchhhhhhhhHHHHHHHHhcCchhhHHHHHHHhhcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH-hh
Q ss_pred CCHHHHHHH-------------HHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 003829 636 PSLTTYNTL-------------MYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDS 702 (793)
Q Consensus 636 ~~~~~~~~l-------------~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 702 (793)
--..+-+.. +.+.....+++++.+.+..+....+ ...+..++.-+.-.++.+....+.+.+.+.
T Consensus 720 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 (932)
T PRK13184 720 EITFTESIVEQKVEELMFFLKGLEALSNKEDYEKAFKHLDNTDPTLI---LYAFDLFAIQALLDEEGESIIQLLQLIYDY 796 (932)
T ss_pred hccchHHHHhhhHHHHHHHHHHHHHHHccccHHHHHhhhhhCCHHHH---HHHHHHHHHHHHHhccchHHHHHHHHHHhc
Q ss_pred CCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCC
Q 003829 703 GLVPDV--ITYNTFVASYAADSLFVEALDVVRYMIKQGCKPN-QNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHV 776 (793)
Q Consensus 703 ~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 776 (793)
-..... .....-+++|.-..++++|-++++..-..-...| ...+...+--+.-.++.+-|...+....+-.+-|
T Consensus 797 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 873 (932)
T PRK13184 797 VSEEERHDHLLVYEIQAHLWNRDLKKAYKLLNRYPLDLLLDEYSEAFVLYGCYLALTEDREAAKAHFSGCREDALFP 873 (932)
T ss_pred cCChhhhhhhhHHHHHHHHHhccHHHHHHHHHhCChhhhccccchHHHHHHHHHHhcCchhHHHHHHhhccccccCc
No 486
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=37.87 E-value=4.7e+02 Score=26.94 Aligned_cols=209 Identities=10% Similarity=0.048 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHH---------------------
Q 003829 318 NALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMV--------------------- 376 (793)
Q Consensus 318 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~--------------------- 376 (793)
..........+|++.-..++.+ .+-.+.++..+...+...|+.+.|.+++++.+
T Consensus 14 q~~F~~~v~~~Dp~~l~~ll~~-----~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g 88 (360)
T PF04910_consen 14 QEQFYAAVQSHDPNALINLLQK-----NPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSG 88 (360)
T ss_pred HHHHHHHHHccCHHHHHHHHHH-----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccC
Q ss_pred ----HcCCCCCHHHHHHH---HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhC
Q 003829 377 ----EIGITPDVFTYTTL---LSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHG-NRGNFVEMMKVFDEINKC 448 (793)
Q Consensus 377 ----~~g~~~~~~~~~~l---i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~ 448 (793)
.-...-|...|.++ |..+.+.|-+..|.++.+-+...+..-|......+|+.|+ +.++++--+++.+.....
T Consensus 89 ~~rL~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~ 168 (360)
T PF04910_consen 89 NCRLDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAK 168 (360)
T ss_pred ccccCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhh
Q ss_pred CCCCC------HHHHHHHHHHHHhCCC--------------hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHH
Q 003829 449 NCKPD------IVTWNTLLAVFGQNGM--------------DSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQA 508 (793)
Q Consensus 449 ~~~~~------~~~~~~l~~~~~~~~~--------------~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a 508 (793)
...+ ...|...+..+...+. .++|...+.+.... -+..+..|+..+.-..+..-.
T Consensus 169 -~~~~~~~~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~----fP~vl~~Ll~~l~~~~~~~~~ 243 (360)
T PF04910_consen 169 -CYRNWLSLLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILR----FPWVLVPLLDKLGISPDSSVS 243 (360)
T ss_pred -hhhhhhhhCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHH----hHHHHHHHHHHhccccchhhh
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 003829 509 MSIYKRMLEAGVTPDLSTYNAVLAALAR 536 (793)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 536 (793)
..-.-.-...+..+.......++..|..
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~ll~~lYv~ 271 (360)
T PF04910_consen 244 NHPHFSPSSWSSEPPSDSLKLLTELYVE 271 (360)
T ss_pred cCCCCcccccccCCchhHHHHHHHHHHH
No 487
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=37.57 E-value=28 Score=29.16 Aligned_cols=38 Identities=29% Similarity=0.430 Sum_probs=0.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003829 216 TTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGK 255 (793)
Q Consensus 216 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~ 255 (793)
..+-..|.-.+|..+|.+|++.|-+||. |+.|+.....
T Consensus 103 ~tlR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a~~ 140 (140)
T PF11663_consen 103 QTLRAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEAKQ 140 (140)
T ss_pred cchhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHhcC
No 488
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=36.78 E-value=3.4e+02 Score=26.93 Aligned_cols=114 Identities=15% Similarity=0.161 Sum_probs=0.0
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC
Q 003829 285 LISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGL 364 (793)
Q Consensus 285 l~~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 364 (793)
++....+.++.....+.+..+. ....-...+..+...|++..|++++.+..+ -...+..+-..---..+
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i~------~v~~~~~~l~~ll~~~dy~~Al~li~~~~~-----~l~~l~~~~c~~~L~~~ 172 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQIK------TVQQTQSRLQELLEEGDYPGALDLIEECQQ-----LLEELKGYSCVRHLSSQ 172 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----HHHhcccchHHHHHhHH
Q ss_pred HHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003829 365 LEEAMELKTQMVEIG-----ITPDVFTYTTLLSGFEKAGKDESAMKVFEE 409 (793)
Q Consensus 365 ~~~A~~~~~~m~~~g-----~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 409 (793)
+++-....+++.+.. ..-|...|..++.+|.-.|+...+.+-+..
T Consensus 173 L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~dkl~~ 222 (291)
T PF10475_consen 173 LQETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAMDKLQM 222 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHHHHHH
No 489
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=36.37 E-value=90 Score=32.53 Aligned_cols=114 Identities=18% Similarity=0.214 Sum_probs=0.0
Q ss_pred HHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh---
Q 003829 648 YSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLF--- 724 (793)
Q Consensus 648 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~--- 724 (793)
+...|++.+|+..|+.++.. ..+.......+.+++.+++..+.+ |..-+.+=......
T Consensus 214 ~~t~gKF~eA~~~Fr~iL~~----------i~l~vv~~~~E~~e~~eli~icrE---------Yilgl~iEl~Rr~l~~~ 274 (422)
T PF06957_consen 214 LFTAGKFEEAIEIFRSILHS----------IPLLVVESREEEDEAKELIEICRE---------YILGLSIELERRELPKD 274 (422)
T ss_dssp HHHTT-HHHHHHHHHHHHHH----------HHC--BSSCHHHHHHHHHHHHHHH---------HHHHHHHHHHHCTS-TT
T ss_pred HHhcCCHHHHHHHHHHHHHH----------hheeeecCHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHhcccc
Q ss_pred -----HHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHH
Q 003829 725 -----VEALDVVRYMIKQGCKPN--QNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKEL 780 (793)
Q Consensus 725 -----~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 780 (793)
+..+++.--+..-+++|. .-+...-+..++|.+++.-|..+.+++++++|.+....
T Consensus 275 ~~~~~kR~lELAAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~~a~ 337 (422)
T PF06957_consen 275 PVEDQKRNLELAAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPEVAE 337 (422)
T ss_dssp THHHHHHHHHHHHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCHHHH
T ss_pred chhhHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHHHHH
No 490
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=36.28 E-value=2.6e+02 Score=29.10 Aligned_cols=134 Identities=15% Similarity=0.143 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-------HHHCCCCC--
Q 003829 637 SLTTYNTLMYMYSRSENFARAEDVLREILAK-GIKPDIISYNTVIFAYCRNGRMKEASRIFSE-------MRDSGLVP-- 706 (793)
Q Consensus 637 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-------~~~~~~~p-- 706 (793)
|..+|--=..+..+..-..+..+-.+.+.+. .-.-+...-..++..+....++.+-++..+. .-+.|..|
T Consensus 38 DEFvYQfqsfc~yr~~~~~~~~~e~~~l~~~~~~~W~~~~VLnvL~sLv~kS~I~e~l~~~~~~~~~~~~~~~~g~~~l~ 117 (404)
T PF10255_consen 38 DEFVYQFQSFCQYRSKLKKKTEEEIQLLKENNPDVWNVYSVLNVLYSLVDKSQINEQLEAEKRGEDPDEVAGEYGSSPLY 117 (404)
T ss_pred HHHHHHhhhHHHHhhhccCCCHHHHHHHHhhccCcccHHHHHHHHHHHHHHHhHHHHHHHhhccCCchhhhcccccccHH
Q ss_pred ---CHHHHHHHHHHHHhcCChHHHHHHHHHHH--HcC-----CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHh
Q 003829 707 ---DVITYNTFVASYAADSLFVEALDVVRYMI--KQG-----CKPNQNTYNSIVDGYCKLNQRYEAITFVNNLS 770 (793)
Q Consensus 707 ---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~-----~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 770 (793)
--.....|++..+-.|++..|++.++.+. +++ ..-...++-.++.+|.-.+++.+|++.+...+
T Consensus 118 ~~LGYFSligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 118 KMLGYFSLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHhhHHHHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
No 491
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=35.81 E-value=8.3e+02 Score=29.15 Aligned_cols=275 Identities=9% Similarity=0.011 Sum_probs=0.0
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 003829 438 MMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLE 517 (793)
Q Consensus 438 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 517 (793)
....+-.+++ .+|..+-...+..+.+.+..+-...+...+.+. +...-...+.++.+.+........+..+.+
T Consensus 622 ~~~~L~~~L~---D~d~~VR~~Av~~L~~~~~~~~~~~L~~aL~D~----d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~ 694 (897)
T PRK13800 622 SVAELAPYLA---DPDPGVRRTAVAVLTETTPPGFGPALVAALGDG----AAAVRRAAAEGLRELVEVLPPAPALRDHLG 694 (897)
T ss_pred hHHHHHHHhc---CCCHHHHHHHHHHHhhhcchhHHHHHHHHHcCC----CHHHHHHHHHHHHHHHhccCchHHHHHHhc
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHC
Q 003829 518 AGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSERAFLELKKK 597 (793)
Q Consensus 518 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 597 (793)
. +|..+....+..+...+..+. ..+-++.+ .+|...-...+.++.+.+..+.....+.
T Consensus 695 ~---~d~~VR~~A~~aL~~~~~~~~--~~l~~~L~---D~d~~VR~~Av~aL~~~~~~~~l~~~l~-------------- 752 (897)
T PRK13800 695 S---PDPVVRAAALDVLRALRAGDA--ALFAAALG---DPDHRVRIEAVRALVSVDDVESVAGAAT-------------- 752 (897)
T ss_pred C---CCHHHHHHHHHHHHhhccCCH--HHHHHHhc---CCCHHHHHHHHHHHhcccCcHHHHHHhc--------------
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHH
Q 003829 598 GFSPDIPTLNAMISIYGRRQMVAK-TNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISY 676 (793)
Q Consensus 598 ~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 676 (793)
.++..+-...+.++...+..+. +...+..+.+ .+|...-...+.++...|..+.+...+..+.+ .++..+-
T Consensus 753 --D~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~---d~d~~VR 824 (897)
T PRK13800 753 --DENREVRIAVAKGLATLGAGGAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALR---ASAWQVR 824 (897)
T ss_pred --CCCHHHHHHHHHHHHHhccccchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhc---CCChHHH
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 003829 677 NTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKL 756 (793)
Q Consensus 677 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 756 (793)
...+.++...+. +++...+..+++ .|+..+-...+.++.+.+....+...+..+++ .+|...-.....++...
T Consensus 825 ~~Aa~aL~~l~~-~~a~~~L~~~L~---D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~---D~d~~Vr~~A~~aL~~~ 897 (897)
T PRK13800 825 QGAARALAGAAA-DVAVPALVEALT---DPHLDVRKAAVLALTRWPGDPAARDALTTALT---DSDADVRAYARRALAHA 897 (897)
T ss_pred HHHHHHHHhccc-cchHHHHHHHhc---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHhhC
No 492
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=35.50 E-value=4.2e+02 Score=25.69 Aligned_cols=159 Identities=11% Similarity=0.036 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCH-----HHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003829 606 LNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENF-----ARAEDVLREILAKGIKPDIISYNTVI 680 (793)
Q Consensus 606 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-----~~A~~~~~~~~~~~~~~~~~~~~~l~ 680 (793)
...++..+.+.+....|..+.+.+... +-=..+...|+......... ......+....+. +......+..++
T Consensus 85 L~~iL~~lL~~~~~~~a~~i~~~y~~l--~~F~~~LE~LLh~vL~~e~~~~~~~~~~~~~L~~v~~l-l~~f~~~l~Ivv 161 (258)
T PF07064_consen 85 LHHILRHLLRRNLDEEALEIASKYRSL--PYFSHALELLLHTVLEEEADSSEDSPIPDALLPRVISL-LQEFPEYLEIVV 161 (258)
T ss_pred hHHHHHHHHhcCCcHHHHHHHHHhccC--CCcHHHHHHHHHHHHhhcccccccccchHHHHHHHHHH-HHcCcchHHHHH
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC------HHHHHHHHHHHH
Q 003829 681 FAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPN------QNTYNSIVDGYC 754 (793)
Q Consensus 681 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~------~~~~~~l~~~~~ 754 (793)
++..+.. .+.+..+.+ .-+++. .|...|.+.|+++.|-.++--+...+-... ...-..|+....
T Consensus 162 ~C~RKtE-----~~~W~~LF~--~lg~P~---dLf~~cl~~~~l~tAa~yLlVl~~~e~~~~~~~~~~~~~al~LL~~a~ 231 (258)
T PF07064_consen 162 NCARKTE-----VRYWPYLFD--YLGSPR---DLFEECLENGNLKTAASYLLVLQNLEGSSVVKDEESRQCALRLLVMAL 231 (258)
T ss_pred HHHHhhH-----HHHHHHHHH--hcCCHH---HHHHHHHHcCcHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHH
Q ss_pred ccCCHHHHHHHHHHHhhCCCCCC
Q 003829 755 KLNQRYEAITFVNNLSKLDPHVT 777 (793)
Q Consensus 755 ~~g~~~~A~~~~~~~~~~~~~~~ 777 (793)
..|+++-+.++++=+...+++..
T Consensus 232 ~~~~w~Lc~eL~RFL~~ld~~~~ 254 (258)
T PF07064_consen 232 ESGDWDLCFELVRFLKALDPEGN 254 (258)
T ss_pred hcccHHHHHHHHHHHHHhCcccC
No 493
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.50 E-value=81 Score=35.58 Aligned_cols=129 Identities=9% Similarity=0.051 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 003829 608 AMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNG 687 (793)
Q Consensus 608 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 687 (793)
++|..+-+.|-.+-|+.+.+.-...- ..+..+|+++.|++.-.++- +..+|..|+......|
T Consensus 625 aiIaYLqKkgypeiAL~FVkD~~tRF------------~LaLe~gnle~ale~akkld------d~d~w~rLge~Al~qg 686 (1202)
T KOG0292|consen 625 AIIAYLQKKGYPEIALHFVKDERTRF------------ELALECGNLEVALEAAKKLD------DKDVWERLGEEALRQG 686 (1202)
T ss_pred HHHHHHHhcCCcceeeeeecCcchhe------------eeehhcCCHHHHHHHHHhcC------cHHHHHHHHHHHHHhc
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 003829 688 RMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVN 767 (793)
Q Consensus 688 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 767 (793)
+.+-|+..|++... |+.|.-.|.-.|+.++-.++.+.+. ...|..+...-.- -.|+.++-+++++
T Consensus 687 n~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~Km~~iae---~r~D~~~~~qnal---Yl~dv~ervkIl~ 751 (1202)
T KOG0292|consen 687 NHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLSKMMKIAE---IRNDATGQFQNAL---YLGDVKERVKILE 751 (1202)
T ss_pred chHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHHHHHHHHH---hhhhhHHHHHHHH---HhccHHHHHHHHH
Q ss_pred HH
Q 003829 768 NL 769 (793)
Q Consensus 768 ~~ 769 (793)
..
T Consensus 752 n~ 753 (1202)
T KOG0292|consen 752 NG 753 (1202)
T ss_pred hc
No 494
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=35.44 E-value=7.1e+02 Score=28.30 Aligned_cols=99 Identities=7% Similarity=0.085 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-------------CHHHHHHHHHHH
Q 003829 688 RMKEASRIFSEMRD-SGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP-------------NQNTYNSIVDGY 753 (793)
Q Consensus 688 ~~~~A~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-------------~~~~~~~l~~~~ 753 (793)
..++...++.+..+ .|+..+......++... .|+...|+.++++++..|... +......++.++
T Consensus 179 s~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~g~It~e~V~~lLG~~d~~~If~LldAL 256 (709)
T PRK08691 179 TAQQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGSGKVAENDVRQMIGAVDKQYLYELLTGI 256 (709)
T ss_pred CHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcccCHHHHHHHHHHH
Q ss_pred HccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhh
Q 003829 754 CKLNQRYEAITFVNNLSKLDPHVTKELECKLSDRIAK 790 (793)
Q Consensus 754 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~k 790 (793)
.. |+...++.+++++.+.+.+ .......|+..+..
T Consensus 257 ~~-~d~~~al~~l~~L~~~G~d-~~~~l~~L~~~l~~ 291 (709)
T PRK08691 257 IN-QDGAALLAKAQEMAACAVG-FDNALGELAILLQQ 291 (709)
T ss_pred Hc-CCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHH
No 495
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=35.24 E-value=1e+02 Score=30.20 Aligned_cols=77 Identities=5% Similarity=0.022 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHH-HHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 003829 707 DVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNS-IVDGYCKLNQRYEAITFVNNLSKLDPHVTKELECKL 784 (793)
Q Consensus 707 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 784 (793)
|...|...+.--.+.|.+.+.-.++.++.++ .+.|...|-. -..-|...++++.++.++.+.+..+|+++.+-+...
T Consensus 106 D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~k-hP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~eyf 183 (435)
T COG5191 106 DPKIWSQYAAYVIKKKMYGEMKNIFAECLTK-HPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEYF 183 (435)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHHH
No 496
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=34.99 E-value=5.3e+02 Score=26.70 Aligned_cols=246 Identities=17% Similarity=0.121 Sum_probs=0.0
Q ss_pred ChhHHHHHHHhhcCCCchhhhHHHHHHhhhcCCCCCCccccccHHHHHHHhccCCChHHHHHHHHHHHhccCCCCCccch
Q 003829 93 SAKGQQVLQSLIDDSFDVKDIDSVLSQLLDQNPGEKSEDLGADLLGIVKGLGFHKKTDLALDVFEWFRSCCSKDGNLVLR 172 (793)
Q Consensus 93 ~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 172 (793)
+..--.-+.+.....+....+..++..+..+ ......+.++...++++.....|-.-.- ...+-
T Consensus 171 n~deie~l~si~sn~wniy~iLnil~slv~k----------sqi~~ql~~~~s~~dp~~va~~~g~s~~------y~~Lg 234 (525)
T KOG3677|consen 171 NKDEIENLQSIFSNNWNIYWILNILHSLVDK----------SQISIQLTASVSNKDPALVALIFGASQP------YANLG 234 (525)
T ss_pred CHHHHHHHHhcccccchHHHHHHHHHHHHHH----------HHHHHHHHHHhcCCChhhhhhhhccccH------HHhhh
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003829 173 GSVIAVLISMLGKEGKVSVAASLLHGLHKD--GFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVIL 250 (793)
Q Consensus 173 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll 250 (793)
......+++...-.|+.....+.++.+.+. |-.|.-.+---++=+|.-.|++.+|++.|-..+-. +...-..+....
T Consensus 235 yfsL~GLlR~H~lLgDhQat~q~idi~pk~iy~t~p~c~VTY~VGFayLmmrryadai~~F~niLly-Iqrtks~~~~~~ 313 (525)
T KOG3677|consen 235 YFSLLGLLRMHILLGDHQATSQILDIMPKEIYGTEPMCRVTYQVGFAYLMMRRYADAIRVFLNILLY-IQRTKSMFSRTT 313 (525)
T ss_pred HHHHHHHHHHHHHhhhhHhhhhhhhcCchhhcCcccceeEeeehhHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhcchh
Q ss_pred HHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc-------CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003829 251 NVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRR-------GSLHEEAAGVFEEMKLAGFSPDKVTYNALLDV 323 (793)
Q Consensus 251 ~~~~~~g~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~-------~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 323 (793)
-.|...+..++..-.++.-....-+..-..++...+.-++- .|+.+.-..+|.-....-..|.+..|..+...
T Consensus 314 y~~d~inKq~eqm~~llai~l~~yPq~iDESi~s~l~Ek~~d~ml~mqng~~q~~ks~f~y~cpkflsp~~~~~dgv~~~ 393 (525)
T KOG3677|consen 314 YQYDMINKQNEQMHHLLAICLSMYPQMIDESIHSQLAEKYGDKMLPMQNGDPQVFKSLFSYLCPKFLSPVVPNYDGVLPN 393 (525)
T ss_pred hhHhhhhhhHHHHHHHHHHHHHhCchhhhHHHHHHHHHHhcchhhhhhcCChHHHHHHHHHcCccccCCCCccccccccc
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCChhHHHHH
Q 003829 324 YGKCRRPKEAMQVLREMKINGCLPSIVTYNSL 355 (793)
Q Consensus 324 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 355 (793)
|.+.--...-...++++.....-|....|..+
T Consensus 394 y~kePl~~qlq~fld~v~qq~dl~~~rsylkl 425 (525)
T KOG3677|consen 394 YHKEPLLQQLQVFLDEVSQQADLPTIRSYLKL 425 (525)
T ss_pred ccccHHHHHHHHHhHHHhhhccchHHHHHHHH
No 497
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=34.79 E-value=5.9e+02 Score=27.10 Aligned_cols=436 Identities=11% Similarity=0.037 Sum_probs=0.0
Q ss_pred cCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHH-------------HHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003829 327 CRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLE-------------EAMELKTQMVEIGITPDVFTYTTLLSG 393 (793)
Q Consensus 327 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~-------------~A~~~~~~m~~~g~~~~~~~~~~li~~ 393 (793)
.+.++..+++++++...|.....+.++.-...|.+.|... .+...-+.|.......+...+....-.
T Consensus 30 ~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~tq~~~ll~el~aL~~~~~~~~~~~~gld~~~~t~~~yn~aVi 109 (696)
T KOG2471|consen 30 NSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCTQHSVLLKELEALTADADAPGDVSSGLSLKQGTVMDYNFAVI 109 (696)
T ss_pred CcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccchhHHHHHHHHHHHHhhccccchhcchhhhcchHHhhhhhee
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--------hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 003829 394 FEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHG--------NRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFG 465 (793)
Q Consensus 394 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--------~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 465 (793)
|.....+..|+++...+..+ ..+=...+........ ...+-..-+.++.+++..+ ......-+.=.....
T Consensus 110 ~yh~~~~g~a~~~~~~lv~r-~e~le~~~aa~v~~l~~~l~~~t~q~e~al~~l~vL~~~~~~~-~~~~~gn~~~~nn~~ 187 (696)
T KOG2471|consen 110 FYHHEENGSAMQLSSNLVSR-TESLESSSAASVTLLSDLLAAETSQCEEALDYLNVLAEIEAEK-RMKLVGNHIPANNLL 187 (696)
T ss_pred eeeHhhcchHHHhhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hccccccccchhhhc
Q ss_pred hCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 003829 466 QNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEK 545 (793)
Q Consensus 466 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 545 (793)
+.+....|..-+--. .+......--++++........+..-.+......-. +......-...+.-.|++.+|.+
T Consensus 188 kt~s~~aAe~s~~~a-----~~k~~~~~ykVr~llq~~~Lk~~krevK~vmn~a~~-s~~~l~LKsq~eY~~gn~~kA~K 261 (696)
T KOG2471|consen 188 KTLSPSAAERSFSTA-----DLKLELQLYKVRFLLQTRNLKLAKREVKHVMNIAQD-SSMALLLKSQLEYAHGNHPKAMK 261 (696)
T ss_pred ccCCcchhcccchhh-----ccchhhhHhhHHHHHHHHHHHHHHHhhhhhhhhcCC-CcHHHHHHHHHHHHhcchHHHHH
Q ss_pred HHHHHhcCCCCCCHhh--------HHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCC----------CHHHHH
Q 003829 546 IFAEMKGGRCKPNELT--------YSSLLHAYANGREIDQMLALSEEIYSERAFLELKKKGFSP----------DIPTLN 607 (793)
Q Consensus 546 ~~~~~~~~~~~p~~~~--------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~ 607 (793)
++...--....--..| |+.|.-.+.+.|.+..+..+|.+.+. -+..-...|+.| +-....
T Consensus 262 lL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~--N~c~qL~~g~~~~~~~tls~nks~eilY 339 (696)
T KOG2471|consen 262 LLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALR--NSCSQLRNGLKPAKTFTLSQNKSMEILY 339 (696)
T ss_pred HHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHH--HHHHHHhccCCCCcceehhcccchhhHH
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC-----------------------------------
Q 003829 608 AMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSE----------------------------------- 652 (793)
Q Consensus 608 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----------------------------------- 652 (793)
...-.|...|++-.|.+.|.+..+. +..++..|-.|..+|....
T Consensus 340 NcG~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCima~~~~l~ee~~~s~s~~~i~~~vig~g~rr~~m~~~n 418 (696)
T KOG2471|consen 340 NCGLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIMALQKGLLEEGNSSLSRSEIRVHVIGKGNRRQLMIEEN 418 (696)
T ss_pred hhhHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHHhhhhhhhhccCCcccccceeeeecccchhheeeccc
Q ss_pred -----------------------------------------------------------------------------CHH
Q 003829 653 -----------------------------------------------------------------------------NFA 655 (793)
Q Consensus 653 -----------------------------------------------------------------------------~~~ 655 (793)
.--
T Consensus 419 t~~~~~qS~~~p~~slefA~vCLrnal~Ll~e~q~~~~~~~~a~ns~~~g~~~e~~e~~~t~~Sk~h~gd~~~~~p~ssp 498 (696)
T KOG2471|consen 419 TYVELAQSNQLPKLSLEFARVCLRNALYLLNEKQDLGSILSVAMNSTKEGSSSEHEEGNTTTDSKEHKGDMSQEIPQSSP 498 (696)
T ss_pred ceeccccccCCCccccHHHHHHHHhhhhcCchhhcchhhhhhhccccccCCCCcCCCCCCCcchhcCCCCCCccCCCCCc
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003829 656 RAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMI 735 (793)
Q Consensus 656 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 735 (793)
.+.+-++.|... .|..+...-.+.|+.-.|+..-+++++ ..--...|.-|+..|. .||+-++++..
T Consensus 499 ~~~e~leNm~~a-------i~A~~ayV~L~Lgd~i~AL~~a~kLLq--~~~lS~~~kfLGHiYA-----aEAL~lldr~s 564 (696)
T KOG2471|consen 499 SAFEDLENMRQA-------IFANMAYVELELGDPIKALSAATKLLQ--LADLSKIYKFLGHIYA-----AEALCLLDRPS 564 (696)
T ss_pred chHHHHHHHHHH-------HHHHHHHHHHHhcChhhHHHHHHHHHh--hhhhhhHHHHHHHHHH-----HHHHHHcCChh
Q ss_pred HcCCCCCH-----------------------------------------------HHHHHHHHHHHccCCHHHHHHHH--
Q 003829 736 KQGCKPNQ-----------------------------------------------NTYNSIVDGYCKLNQRYEAITFV-- 766 (793)
Q Consensus 736 ~~~~~p~~-----------------------------------------------~~~~~l~~~~~~~g~~~~A~~~~-- 766 (793)
+.+-.-++ ..+..|+.+|+-+|++++|...+
T Consensus 565 eA~~HL~p~~~~~~~f~~~~n~~Df~~~~~~~e~l~~s~~r~~q~~~~sv~~Ar~v~~~nLa~a~alq~~~dqAk~ll~~ 644 (696)
T KOG2471|consen 565 EAGAHLSPYLLGQDDFKLPYNQEDFDQWWKHTETLDPSTGRTRQSVFLSVEEARGVLFANLAAALALQGHHDQAKSLLTH 644 (696)
T ss_pred hhhhccChhhcCCcccccccchhhhhhhhccccccCCcCCCCcccccCCHHHHhHHHHHHHHHHHHHhcccHHHHHHHHH
Q ss_pred -HHHhhCCCCCCHHHHHHHHHH
Q 003829 767 -NNLSKLDPHVTKELECKLSDR 787 (793)
Q Consensus 767 -~~~~~~~~~~~~~~~~~l~~~ 787 (793)
-.++.....+.+......++.
T Consensus 645 aatl~hs~v~~~A~~lavyidL 666 (696)
T KOG2471|consen 645 AATLLHSLVNVQATVLAVYIDL 666 (696)
T ss_pred HHHhhhccccHHHHHHHHHHHH
No 498
>PRK14700 recombination factor protein RarA; Provisional
Probab=34.63 E-value=4.7e+02 Score=25.94 Aligned_cols=195 Identities=13% Similarity=0.112 Sum_probs=0.0
Q ss_pred CCCccchHHHHHHHHHHHHhcCChHHHHHHHHHHhh-------CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 003829 166 DGNLVLRGSVIAVLISMLGKEGKVSVAASLLHGLHK-------DGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEG 238 (793)
Q Consensus 166 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 238 (793)
+|.+..+.......--.-.+.=..+....+++.... ..+..+..+...++... .|+...|+..++.+....
T Consensus 18 NP~f~vn~ALlSR~~v~~l~~L~~~di~~il~ral~~~~~~~~~~~~i~~~al~~ia~~a--~GDaR~aLN~LE~a~~~~ 95 (300)
T PRK14700 18 NPTYYLNDALVSRLFILRLKRLSLVATQKLIEKALSQDEVLAKHKFKIDDGLYNAMHNYN--EGDCRKILNLLERMFLIS 95 (300)
T ss_pred CccceecHhhhhhhheeeecCCCHHHHHHHHHHHHHhhhccCCcCCCcCHHHHHHHHHhc--CCHHHHHHHHHHHHHhhc
Q ss_pred CCCCH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH---cCCCHHHHHHHHHHHHHCCCCCC
Q 003829 239 CKPTL--ITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCR---RGSLHEEAAGVFEEMKLAGFSPD 313 (793)
Q Consensus 239 ~~p~~--~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~---~~~~~~~A~~~~~~~~~~g~~~~ 313 (793)
...+. .+...+-....+....+++ +...+--++.++. |..|.+.|.-++.+|++.|-.|.
T Consensus 96 ~~~~~~~it~~~~~~~~~~~~~~yDk---------------~gd~HYd~iSAf~KSiRGSDpDAAlYyLArml~~GEDp~ 160 (300)
T PRK14700 96 TRGDEIYLNKELFDQAVGETSRDFHR---------------EGKEFYEQLSAFHKSVRGTDPDAAIFWLSVMLDNGVDPL 160 (300)
T ss_pred cccCCCccCHHHHHHHHhHHHhcccC---------------CcchhHHHHHHHHHHhhcCCccHHHHHHHHHHHcCCCHH
Q ss_pred HHHHHHHHHHHHhcC-----ChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003829 314 KVTYNALLDVYGKCR-----RPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVE 377 (793)
Q Consensus 314 ~~~~~~li~~~~~~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 377 (793)
...-..++.++-..| -..-|...++....-|.+--.......+-.++..-+-..+...+....+
T Consensus 161 ~IaRRLii~AsEDIGlAdP~al~~a~aa~~A~~~iG~PEa~i~La~aviyLA~aPKSNs~y~A~~~A~~ 229 (300)
T PRK14700 161 VIARRMLCIASEDIGNADPQALRVAMDAWNAYEKLGMPEGRLVLAQAAIYLAVAPKSNACYKALAQAQQ 229 (300)
T ss_pred HHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHcCCCchHHHHHHHHHHH
No 499
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=34.53 E-value=7.7e+02 Score=29.44 Aligned_cols=212 Identities=11% Similarity=0.102 Sum_probs=0.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHh---cCCCCCCHhhHHHHHHHHH-cCCCHHHHHHHHHHHHhHHHHHHHHHCCC-CCCH
Q 003829 529 AVLAALARGGMWEQSEKIFAEMK---GGRCKPNELTYSSLLHAYA-NGREIDQMLALSEEIYSERAFLELKKKGF-SPDI 603 (793)
Q Consensus 529 ~l~~~~~~~g~~~~A~~~~~~~~---~~~~~p~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~ 603 (793)
..+..+...+++.+|..+.++-+ .-=+.-++..+..=+..+. +.++.+-.-.++..+.+++....|-.... ....
T Consensus 699 ~~ir~~Ld~~~Y~~Af~~~RkhRIdlNll~Dh~p~~Fl~ni~~Fv~qi~~~~~lnLFls~L~~EDvt~tmY~~~~~~~~~ 778 (928)
T PF04762_consen 699 AGIRKLLDAKDYKEAFELCRKHRIDLNLLYDHNPEQFLENIELFVEQIKDVDYLNLFLSSLRNEDVTKTMYKDTYPPSSE 778 (928)
T ss_pred HHHHHHHhhccHHHHHHHHHHhccccceEEECCHHHHHHHHHHHHHhcCCHHHHHHHHHhcccccccccccccccccccc
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003829 604 PTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSE--NFARAEDVLREILAKGIKPDIISYNTVIF 681 (793)
Q Consensus 604 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 681 (793)
.............+++....+.+....+. .......+..++.+|.+.+ ++++|+....++.+.
T Consensus 779 ~~~~~~~~~~~~~~KVn~ICdair~~l~~-~~~~~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~-------------- 843 (928)
T PF04762_consen 779 AQPNSNSSTASSESKVNKICDAIRKALEK-PKDKDKYLQPILTAYVKKSPPDLEEALQLIKELREE-------------- 843 (928)
T ss_pred cccccccCCCccccHHHHHHHHHHHHhcc-cccchhhHHHHHHHHHhcCchhHHHHHHHHHHHHhc--------------
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHH----------HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003829 682 AYCRNGRMKEASRIFSEMRDSGLVPDVITY----------NTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVD 751 (793)
Q Consensus 682 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~----------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 751 (793)
+...|.+.++.+.= +..-...| .+++-+-..+.+..|=+-+++++.+ ++++..-|..=.
T Consensus 844 ------~~~~ae~alkyl~f--LvDvn~Ly~~ALG~YDl~Lal~VAq~SQkDPKEYLPfL~~L~~--l~~~~rry~ID~- 912 (928)
T PF04762_consen 844 ------DPESAEEALKYLCF--LVDVNKLYDVALGTYDLELALMVAQQSQKDPKEYLPFLQELQK--LPPLYRRYKIDD- 912 (928)
T ss_pred ------ChHHHHHHHhHhee--eccHHHHHHHHhhhcCHHHHHHHHHHhccChHHHHHHHHHHHh--CChhheeeeHhh-
Q ss_pred HHHccCCHHHHHHHHHHH
Q 003829 752 GYCKLNQRYEAITFVNNL 769 (793)
Q Consensus 752 ~~~~~g~~~~A~~~~~~~ 769 (793)
..|++++|+..+.++
T Consensus 913 ---hLkRy~kAL~~L~~~ 927 (928)
T PF04762_consen 913 ---HLKRYEKALRHLSAC 927 (928)
T ss_pred ---hhCCHHHHHHHHHhh
No 500
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=34.45 E-value=5.4e+02 Score=26.62 Aligned_cols=130 Identities=8% Similarity=-0.074 Sum_probs=0.0
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003829 643 TLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRN------GRMKEASRIFSEMRDSGLVPDVITYNTFVA 716 (793)
Q Consensus 643 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 716 (793)
..+..+.+.+++..|.++|+++.+..+.+....+...+..+++. -++++|.+.++.+.......-..+.+.-..
T Consensus 135 ~~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~~~~~~~~~~~~~~~~~~~ 214 (380)
T TIGR02710 135 GYARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLNDPLPERLALYQVTSHDELE 214 (380)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhhccchhhhhhhhhhhhHHH
Q ss_pred HHHhcCChHHHHHHH---HHHHHcCCCCCHHHHHHHHHHHH--ccCCHHHHHHHHHHHhhC
Q 003829 717 SYAADSLFVEALDVV---RYMIKQGCKPNQNTYNSIVDGYC--KLNQRYEAITFVNNLSKL 772 (793)
Q Consensus 717 ~~~~~g~~~~A~~~~---~~~~~~~~~p~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~ 772 (793)
...+....-.+...- ....+....--......+.++-. ..|+++.|...+-+++++
T Consensus 215 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~na~rr~~~~ry~da~~r~yR~~e~ 275 (380)
T TIGR02710 215 DVIKRNASILPEIIGSRNGRREAKRRPFLPLLGDLLANAERRATQGRYDDAAARLYRALEL 275 (380)
T ss_pred HHHHhHHhhcchhhhccchhhhhcccchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Done!