Query 003829
Match_columns 793
No_of_seqs 796 out of 4139
Neff 11.3
Searched_HMMs 29240
Date Mon Mar 25 05:28:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003829.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003829hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 3.2E-40 1.1E-44 369.4 41.8 514 183-778 63-585 (597)
2 2xpi_A Anaphase-promoting comp 100.0 2.8E-39 9.4E-44 361.7 43.1 503 171-753 82-594 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 1.8E-26 6.1E-31 242.5 49.6 365 357-775 7-371 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 5.1E-26 1.7E-30 239.0 49.9 381 180-572 6-386 (388)
5 4g26_A Pentatricopeptide repea 100.0 6.2E-29 2.1E-33 264.2 26.3 206 191-396 8-222 (501)
6 4g26_A Pentatricopeptide repea 100.0 1.3E-28 4.5E-33 261.7 26.2 205 226-431 8-222 (501)
7 2gw1_A Mitochondrial precursor 99.9 3E-24 1E-28 235.1 38.6 455 280-779 7-485 (514)
8 2gw1_A Mitochondrial precursor 99.9 4E-23 1.4E-27 226.1 40.6 459 242-748 5-488 (514)
9 3fp2_A TPR repeat-containing p 99.9 1.9E-22 6.5E-27 222.1 40.7 261 503-779 216-498 (537)
10 2y4t_A DNAJ homolog subfamily 99.9 1.9E-21 6.7E-26 208.7 41.4 350 383-776 25-414 (450)
11 2y4t_A DNAJ homolog subfamily 99.9 4.4E-21 1.5E-25 205.9 43.4 317 170-496 23-370 (450)
12 3fp2_A TPR repeat-containing p 99.9 2.9E-21 9.8E-26 212.6 40.3 448 172-667 24-491 (537)
13 1xi4_A Clathrin heavy chain; a 99.9 8.5E-17 2.9E-21 180.2 62.3 552 132-765 984-1585(1630)
14 2xm6_A Protein corresponding t 99.9 1.2E-17 4.2E-22 180.5 51.8 394 313-778 38-473 (490)
15 3ieg_A DNAJ homolog subfamily 99.9 5.3E-19 1.8E-23 183.2 39.5 322 419-779 3-342 (359)
16 1xi4_A Clathrin heavy chain; a 99.9 9.9E-16 3.4E-20 171.7 64.7 531 137-757 843-1415(1630)
17 2xm6_A Protein corresponding t 99.9 3.4E-17 1.2E-21 176.9 51.7 365 369-775 27-435 (490)
18 3ieg_A DNAJ homolog subfamily 99.9 9E-18 3.1E-22 173.9 42.0 332 172-535 2-351 (359)
19 3hym_B Cell division cycle pro 99.8 1E-17 3.4E-22 171.3 32.3 284 453-753 21-314 (330)
20 3hym_B Cell division cycle pro 99.8 9.7E-18 3.3E-22 171.4 32.1 287 486-788 19-314 (330)
21 2ooe_A Cleavage stimulation fa 99.8 5.1E-16 1.8E-20 169.6 46.2 220 542-775 256-495 (530)
22 2ooe_A Cleavage stimulation fa 99.8 4E-16 1.4E-20 170.4 43.8 414 302-777 2-459 (530)
23 4g1t_A Interferon-induced prot 99.8 1E-16 3.6E-21 172.9 34.2 304 433-778 152-465 (472)
24 4eqf_A PEX5-related protein; a 99.8 6.9E-18 2.4E-22 175.2 21.8 275 490-770 66-354 (365)
25 1fch_A Peroxisomal targeting s 99.8 5.8E-17 2E-21 168.5 27.6 305 146-478 38-354 (368)
26 1fch_A Peroxisomal targeting s 99.8 4.3E-17 1.5E-21 169.5 26.4 306 430-772 36-359 (368)
27 1b89_A Protein (clathrin heavy 99.8 3.3E-16 1.1E-20 157.8 28.1 239 185-466 15-253 (449)
28 4eqf_A PEX5-related protein; a 99.8 1.7E-16 5.7E-21 164.8 25.9 267 172-443 64-351 (365)
29 1b89_A Protein (clathrin heavy 99.7 2.1E-16 7.2E-21 159.1 24.9 282 220-545 15-303 (449)
30 3cv0_A Peroxisome targeting si 99.7 3.7E-16 1.3E-20 159.3 26.4 284 453-773 20-316 (327)
31 3cv0_A Peroxisome targeting si 99.7 1.1E-15 3.7E-20 155.9 29.4 264 174-444 22-311 (327)
32 4g1t_A Interferon-induced prot 99.7 3.3E-15 1.1E-19 161.1 34.7 383 314-738 51-460 (472)
33 3mkr_A Coatomer subunit epsilo 99.7 6.4E-16 2.2E-20 153.3 26.0 258 499-779 9-271 (291)
34 3mkr_A Coatomer subunit epsilo 99.7 3E-15 1E-19 148.4 27.7 193 281-483 67-264 (291)
35 3spa_A Mtrpol, DNA-directed RN 99.7 2.6E-17 8.8E-22 178.8 11.0 116 243-359 127-246 (1134)
36 3spa_A Mtrpol, DNA-directed RN 99.7 9E-17 3.1E-21 174.6 14.1 187 601-792 125-345 (1134)
37 3uq3_A Heat shock protein STI1 99.6 4.5E-14 1.5E-18 138.2 26.2 228 525-773 6-237 (258)
38 3e4b_A ALGK; tetratricopeptide 99.6 1.3E-14 4.3E-19 154.0 23.5 378 320-772 9-421 (452)
39 3e4b_A ALGK; tetratricopeptide 99.6 3.7E-14 1.3E-18 150.5 25.8 374 285-735 9-419 (452)
40 1ouv_A Conserved hypothetical 99.6 3.6E-13 1.2E-17 133.0 30.6 229 523-778 5-257 (273)
41 3u4t_A TPR repeat-containing p 99.6 4.5E-14 1.5E-18 139.5 23.9 241 527-779 6-257 (272)
42 2pl2_A Hypothetical conserved 99.6 3.4E-14 1.2E-18 134.4 21.6 198 557-770 3-212 (217)
43 2pl2_A Hypothetical conserved 99.6 7.7E-14 2.6E-18 132.0 22.4 208 172-410 4-211 (217)
44 3uq3_A Heat shock protein STI1 99.6 2.2E-13 7.4E-18 133.3 26.3 225 173-412 5-235 (258)
45 2h6f_A Protein farnesyltransfe 99.6 1.9E-13 6.5E-18 140.0 25.7 246 525-789 98-364 (382)
46 4e6h_A MRNA 3'-END-processing 99.6 5.5E-11 1.9E-15 130.0 45.6 480 225-753 49-584 (679)
47 2q7f_A YRRB protein; TPR, prot 99.6 1.8E-13 6.2E-18 132.5 21.9 209 558-780 22-230 (243)
48 1ouv_A Conserved hypothetical 99.6 5.2E-12 1.8E-16 124.6 32.8 221 208-447 6-250 (273)
49 2ho1_A Type 4 fimbrial biogene 99.6 4.7E-13 1.6E-17 130.4 24.8 207 559-778 37-244 (252)
50 4e6h_A MRNA 3'-END-processing 99.6 5.8E-11 2E-15 129.8 43.2 448 296-779 49-577 (679)
51 2h6f_A Protein farnesyltransfe 99.6 9.5E-13 3.2E-17 134.8 27.2 249 172-429 96-363 (382)
52 3u4t_A TPR repeat-containing p 99.6 6.6E-13 2.3E-17 131.1 24.9 251 490-755 4-267 (272)
53 3vtx_A MAMA; tetratricopeptide 99.6 6.2E-13 2.1E-17 122.3 22.3 171 602-776 4-174 (184)
54 2vq2_A PILW, putative fimbrial 99.6 1.6E-12 5.5E-17 124.0 26.0 210 558-779 7-218 (225)
55 2ho1_A Type 4 fimbrial biogene 99.5 2.9E-12 1E-16 124.7 27.5 201 173-378 37-238 (252)
56 1xnf_A Lipoprotein NLPI; TPR, 99.5 2.5E-13 8.5E-18 134.4 20.1 224 145-377 17-243 (275)
57 1xnf_A Lipoprotein NLPI; TPR, 99.5 7.2E-13 2.5E-17 131.0 22.9 247 501-766 17-269 (275)
58 4a1s_A PINS, partner of inscut 99.5 1.3E-13 4.3E-18 145.6 18.5 278 493-776 52-376 (411)
59 2vq2_A PILW, putative fimbrial 99.5 6.5E-12 2.2E-16 119.7 28.0 202 172-377 7-210 (225)
60 2q7f_A YRRB protein; TPR, prot 99.5 1.2E-12 4.1E-17 126.6 22.4 201 172-378 22-222 (243)
61 3sf4_A G-protein-signaling mod 99.5 4.4E-13 1.5E-17 141.2 19.5 279 491-775 11-339 (406)
62 3ro2_A PINS homolog, G-protein 99.5 4.2E-13 1.4E-17 137.1 18.5 274 496-775 12-335 (338)
63 3sf4_A G-protein-signaling mod 99.5 5.7E-13 1.9E-17 140.3 18.7 231 526-761 89-365 (406)
64 4a1s_A PINS, partner of inscut 99.5 1E-12 3.4E-17 138.7 19.5 270 175-446 50-370 (411)
65 2ond_A Cleavage stimulation fa 99.4 5.6E-11 1.9E-15 119.2 28.4 224 541-778 33-276 (308)
66 3ro2_A PINS homolog, G-protein 99.4 2.7E-12 9.2E-17 131.0 19.1 200 175-376 7-250 (338)
67 3ulq_A Response regulator aspa 99.4 9.4E-12 3.2E-16 129.6 22.5 236 530-773 109-369 (383)
68 4abn_A Tetratricopeptide repea 99.4 7.1E-12 2.4E-16 133.8 21.5 213 540-769 84-318 (474)
69 3nf1_A KLC 1, kinesin light ch 99.4 1.7E-12 6E-17 130.9 15.5 248 525-775 28-310 (311)
70 2ond_A Cleavage stimulation fa 99.4 2.5E-10 8.5E-15 114.5 30.0 218 190-413 33-270 (308)
71 3as5_A MAMA; tetratricopeptide 99.4 1.7E-11 5.8E-16 112.7 19.6 172 603-778 8-179 (186)
72 3vtx_A MAMA; tetratricopeptide 99.4 7.7E-11 2.6E-15 108.1 23.7 167 207-378 4-170 (184)
73 4abn_A Tetratricopeptide repea 99.4 2.1E-11 7.1E-16 130.2 21.3 215 189-410 84-318 (474)
74 3ulq_A Response regulator aspa 99.4 7.9E-11 2.7E-15 122.6 25.0 234 425-665 109-366 (383)
75 4gyw_A UDP-N-acetylglucosamine 99.4 8.8E-12 3E-16 138.1 18.1 167 602-774 8-176 (723)
76 4i17_A Hypothetical protein; T 99.4 3.9E-11 1.3E-15 114.6 20.5 173 601-778 5-215 (228)
77 3q15_A PSP28, response regulat 99.3 2.4E-10 8.3E-15 118.6 25.6 234 530-772 107-365 (378)
78 3nf1_A KLC 1, kinesin light ch 99.3 9.5E-11 3.2E-15 118.0 20.6 244 168-413 22-307 (311)
79 1hz4_A MALT regulatory protein 99.3 9.6E-10 3.3E-14 113.9 28.7 273 497-774 22-324 (373)
80 1hz4_A MALT regulatory protein 99.3 1.4E-09 4.8E-14 112.7 29.8 271 175-446 16-320 (373)
81 3edt_B KLC 2, kinesin light ch 99.3 3.6E-11 1.2E-15 119.2 14.8 201 570-772 12-281 (283)
82 3q15_A PSP28, response regulat 99.3 8.7E-10 3E-14 114.3 24.3 159 288-447 110-289 (378)
83 1qqe_A Vesicular transport pro 99.2 3.1E-10 1.1E-14 112.7 17.9 202 568-776 46-273 (292)
84 4gyw_A UDP-N-acetylglucosamine 99.2 7.3E-10 2.5E-14 122.8 22.4 167 171-342 7-173 (723)
85 3as5_A MAMA; tetratricopeptide 99.2 2E-09 6.9E-14 98.6 21.6 165 173-342 8-172 (186)
86 3urz_A Uncharacterized protein 99.2 3.5E-10 1.2E-14 105.9 16.4 168 605-778 6-192 (208)
87 3qky_A Outer membrane assembly 99.2 2.1E-09 7.3E-14 104.8 21.4 175 600-779 12-231 (261)
88 2fo7_A Synthetic consensus TPR 99.2 1.6E-09 5.4E-14 93.2 17.8 133 640-775 3-135 (136)
89 4i17_A Hypothetical protein; T 99.2 4.8E-09 1.6E-13 99.9 22.7 192 209-413 8-209 (228)
90 1qqe_A Vesicular transport pro 99.1 1.3E-09 4.4E-14 108.2 17.0 168 610-779 44-235 (292)
91 3mv2_B Coatomer subunit epsilo 99.1 2.1E-08 7.2E-13 96.8 24.6 175 600-780 97-290 (310)
92 3edt_B KLC 2, kinesin light ch 99.1 1.6E-09 5.5E-14 107.1 16.6 125 147-272 15-155 (283)
93 4ga2_A E3 SUMO-protein ligase 99.1 3.7E-10 1.3E-14 99.1 10.0 130 644-779 3-136 (150)
94 3rjv_A Putative SEL1 repeat pr 99.1 1.1E-08 3.7E-13 95.9 20.5 171 601-780 16-205 (212)
95 2yhc_A BAMD, UPF0169 lipoprote 99.0 1.4E-08 4.8E-13 96.3 19.5 170 603-778 4-219 (225)
96 4ga2_A E3 SUMO-protein ligase 99.0 9E-10 3.1E-14 96.7 10.1 144 609-758 3-149 (150)
97 2uy1_A Cleavage stimulation fa 99.0 8.5E-07 2.9E-11 94.2 34.9 125 604-736 287-412 (493)
98 3mv2_B Coatomer subunit epsilo 99.0 5.4E-08 1.9E-12 94.0 23.1 180 298-484 85-283 (310)
99 2pzi_A Probable serine/threoni 99.0 4.9E-09 1.7E-13 117.1 18.3 180 570-758 402-583 (681)
100 2vsy_A XCC0866; transferase, g 99.0 8.3E-09 2.8E-13 113.4 18.7 157 616-777 2-162 (568)
101 2pzi_A Probable serine/threoni 99.0 3.2E-09 1.1E-13 118.6 15.4 162 614-781 402-572 (681)
102 2fo7_A Synthetic consensus TPR 99.0 1.9E-08 6.4E-13 86.3 17.1 130 605-737 3-132 (136)
103 1hh8_A P67PHOX, NCF-2, neutrop 99.0 2.1E-08 7E-13 94.3 18.3 126 606-736 9-149 (213)
104 2r5s_A Uncharacterized protein 99.0 4.6E-09 1.6E-13 95.2 13.1 162 605-771 8-172 (176)
105 4gco_A Protein STI-1; structur 99.0 8.4E-09 2.9E-13 87.1 13.5 108 669-779 8-117 (126)
106 2ifu_A Gamma-SNAP; membrane fu 99.0 4.2E-09 1.4E-13 105.4 13.6 227 502-764 4-253 (307)
107 2uy1_A Cleavage stimulation fa 99.0 4.9E-07 1.7E-11 96.1 30.1 370 172-586 14-411 (493)
108 3urz_A Uncharacterized protein 99.0 2.5E-08 8.5E-13 93.1 17.6 74 214-290 60-133 (208)
109 3qou_A Protein YBBN; thioredox 99.0 1.4E-08 4.9E-13 100.2 16.7 165 600-771 114-283 (287)
110 3qky_A Outer membrane assembly 99.0 3.9E-08 1.3E-12 95.8 19.7 209 172-403 14-251 (261)
111 3dra_A Protein farnesyltransfe 98.9 4.9E-07 1.7E-11 88.5 25.8 219 148-377 48-286 (306)
112 2qfc_A PLCR protein; TPR, HTH, 98.9 8.2E-08 2.8E-12 95.3 20.2 167 605-772 77-266 (293)
113 3rjv_A Putative SEL1 repeat pr 98.9 1.6E-07 5.4E-12 87.9 20.8 175 543-738 5-198 (212)
114 3dra_A Protein farnesyltransfe 98.9 8.8E-07 3E-11 86.7 26.8 171 188-364 48-235 (306)
115 3u3w_A Transcriptional activat 98.9 6.8E-07 2.3E-11 88.6 26.3 166 607-772 79-266 (293)
116 3gyz_A Chaperone protein IPGC; 98.9 1.9E-08 6.4E-13 87.6 13.0 101 673-777 36-138 (151)
117 2yhc_A BAMD, UPF0169 lipoprote 98.9 3.7E-07 1.3E-11 86.4 21.9 204 172-414 3-214 (225)
118 2ifu_A Gamma-SNAP; membrane fu 98.8 3.1E-08 1.1E-12 99.0 14.8 230 466-729 3-253 (307)
119 2r5s_A Uncharacterized protein 98.8 2.3E-08 8E-13 90.5 12.6 160 176-340 9-170 (176)
120 3qou_A Protein YBBN; thioredox 98.8 1.8E-07 6.3E-12 92.2 18.0 164 172-340 116-281 (287)
121 2vgx_A Chaperone SYCD; alterna 98.8 1.7E-08 5.9E-13 88.0 9.2 103 673-778 21-124 (148)
122 1hh8_A P67PHOX, NCF-2, neutrop 98.8 3.9E-07 1.3E-11 85.4 19.1 143 640-788 8-166 (213)
123 2e2e_A Formate-dependent nitri 98.8 6.1E-08 2.1E-12 87.9 12.6 127 649-778 21-150 (177)
124 4gco_A Protein STI-1; structur 98.8 2E-07 6.8E-12 78.6 14.7 108 639-751 14-123 (126)
125 3gyz_A Chaperone protein IPGC; 98.7 9.4E-08 3.2E-12 83.1 12.3 103 637-744 35-138 (151)
126 4f3v_A ESX-1 secretion system 98.7 2.9E-07 9.9E-12 87.7 16.5 192 571-775 18-240 (282)
127 2vsy_A XCC0866; transferase, g 98.7 2.9E-07 1E-11 101.0 19.2 152 187-343 3-157 (568)
128 3sz7_A HSC70 cochaperone (SGT) 98.7 1.6E-07 5.5E-12 83.7 14.0 102 674-778 12-114 (164)
129 3gw4_A Uncharacterized protein 98.7 2.2E-07 7.5E-12 86.3 15.0 160 614-774 3-178 (203)
130 1a17_A Serine/threonine protei 98.7 5E-07 1.7E-11 80.6 16.7 131 639-772 14-146 (166)
131 4gcn_A Protein STI-1; structur 98.7 9.1E-08 3.1E-12 80.9 10.0 102 673-776 8-116 (127)
132 3u3w_A Transcriptional activat 98.7 4E-06 1.4E-10 83.0 23.6 162 285-446 81-264 (293)
133 3upv_A Heat shock protein STI1 98.7 3.1E-07 1.1E-11 77.6 13.1 99 673-773 4-102 (126)
134 1hxi_A PEX5, peroxisome target 98.6 2E-07 6.7E-12 77.9 11.0 99 675-777 19-119 (121)
135 2xcb_A PCRH, regulatory protei 98.6 2.4E-07 8.1E-12 80.3 11.5 103 673-777 18-120 (142)
136 3q49_B STIP1 homology and U bo 98.6 5.4E-07 1.8E-11 77.4 13.6 102 672-775 8-109 (137)
137 1a17_A Serine/threonine protei 98.6 1.3E-06 4.3E-11 77.9 16.6 130 604-736 14-145 (166)
138 3q7a_A Farnesyltransferase alp 98.6 1.9E-05 6.6E-10 77.9 26.0 167 189-360 70-253 (349)
139 3q7a_A Farnesyltransferase alp 98.6 2.8E-05 9.6E-10 76.8 27.1 222 221-447 67-330 (349)
140 2qfc_A PLCR protein; TPR, HTH, 98.6 5.8E-06 2E-10 81.8 22.4 131 606-736 118-265 (293)
141 2vyi_A SGTA protein; chaperone 98.6 1.1E-06 3.8E-11 74.4 15.0 116 640-758 14-129 (131)
142 2kck_A TPR repeat; tetratricop 98.6 4.8E-07 1.6E-11 74.3 12.2 104 672-777 5-111 (112)
143 1p5q_A FKBP52, FK506-binding p 98.6 9.9E-07 3.4E-11 89.0 16.7 132 638-772 147-294 (336)
144 1na0_A Designed protein CTPR3; 98.6 2E-06 6.7E-11 72.2 16.0 101 674-776 10-110 (125)
145 1na0_A Designed protein CTPR3; 98.6 8.3E-07 2.8E-11 74.5 13.7 117 638-757 9-125 (125)
146 1elw_A TPR1-domain of HOP; HOP 98.6 1.1E-06 3.6E-11 73.0 14.2 104 673-778 4-107 (118)
147 2hr2_A Hypothetical protein; a 98.6 2.6E-07 8.8E-12 79.1 10.1 104 674-779 12-138 (159)
148 2lni_A Stress-induced-phosphop 98.6 8.2E-07 2.8E-11 75.7 13.7 104 673-778 16-119 (133)
149 2lni_A Stress-induced-phosphop 98.6 7.3E-07 2.5E-11 76.0 13.3 121 635-758 13-133 (133)
150 2e2e_A Formate-dependent nitri 98.6 4.8E-07 1.6E-11 81.9 12.5 121 614-737 21-144 (177)
151 2vgx_A Chaperone SYCD; alterna 98.6 3.8E-07 1.3E-11 79.4 11.2 109 625-737 9-118 (148)
152 2c2l_A CHIP, carboxy terminus 98.6 5.4E-07 1.8E-11 88.4 13.4 165 602-776 3-168 (281)
153 3dss_A Geranylgeranyl transfer 98.5 4.9E-05 1.7E-09 74.7 26.8 180 600-786 105-317 (331)
154 4gcn_A Protein STI-1; structur 98.5 9.2E-07 3.2E-11 74.6 12.7 108 639-749 9-122 (127)
155 3dss_A Geranylgeranyl transfer 98.5 6.1E-05 2.1E-09 74.0 26.4 167 150-326 47-239 (331)
156 2dba_A Smooth muscle cell asso 98.5 2.6E-06 8.9E-11 74.1 15.4 103 672-777 27-133 (148)
157 2vyi_A SGTA protein; chaperone 98.5 2.7E-06 9.1E-11 72.0 15.0 120 602-724 11-130 (131)
158 3rkv_A Putative peptidylprolyl 98.5 8.8E-07 3E-11 78.7 12.0 103 674-777 12-131 (162)
159 3upv_A Heat shock protein STI1 98.5 2.8E-06 9.7E-11 71.5 14.1 97 638-737 4-101 (126)
160 2c2l_A CHIP, carboxy terminus 98.5 2E-06 6.8E-11 84.4 14.6 99 636-737 2-101 (281)
161 2fbn_A 70 kDa peptidylprolyl i 98.4 3E-06 1E-10 78.1 14.6 131 639-773 39-187 (198)
162 4f3v_A ESX-1 secretion system 98.4 4.5E-06 1.5E-10 79.6 15.6 126 285-413 108-237 (282)
163 2xev_A YBGF; tetratricopeptide 98.4 1.7E-06 5.8E-11 73.3 11.5 100 677-778 6-111 (129)
164 1p5q_A FKBP52, FK506-binding p 98.4 4.1E-06 1.4E-10 84.5 16.2 130 603-736 147-293 (336)
165 2xcb_A PCRH, regulatory protei 98.4 1.2E-06 4.3E-11 75.6 10.7 99 637-737 17-115 (142)
166 1elr_A TPR2A-domain of HOP; HO 98.4 2.3E-06 8E-11 72.4 11.8 99 675-774 6-110 (131)
167 1elw_A TPR1-domain of HOP; HOP 98.4 1.1E-05 3.6E-10 66.7 15.5 110 638-751 4-114 (118)
168 3ro3_A PINS homolog, G-protein 98.4 1.4E-06 4.7E-11 77.3 10.5 135 640-774 11-160 (164)
169 3gw4_A Uncharacterized protein 98.4 3.4E-06 1.1E-10 78.2 13.6 85 146-236 5-94 (203)
170 3q49_B STIP1 homology and U bo 98.4 4.5E-06 1.5E-10 71.5 13.1 100 635-736 6-105 (137)
171 1elr_A TPR2A-domain of HOP; HO 98.4 3.9E-06 1.3E-10 71.0 12.4 114 638-754 4-123 (131)
172 3k9i_A BH0479 protein; putativ 98.3 6.7E-07 2.3E-11 74.3 6.5 93 686-779 3-97 (117)
173 3sz7_A HSC70 cochaperone (SGT) 98.3 1.1E-05 3.7E-10 71.7 14.8 98 637-737 10-108 (164)
174 2dba_A Smooth muscle cell asso 98.3 2E-05 7E-10 68.3 16.3 112 635-752 25-142 (148)
175 2if4_A ATFKBP42; FKBP-like, al 98.3 1.4E-06 4.9E-11 87.9 9.4 154 603-779 179-335 (338)
176 1wao_1 Serine/threonine protei 98.3 2.5E-06 8.6E-11 90.5 11.1 117 646-767 14-134 (477)
177 2kck_A TPR repeat; tetratricop 98.3 8E-06 2.7E-10 66.8 11.6 98 637-737 5-106 (112)
178 2fbn_A 70 kDa peptidylprolyl i 98.3 1.3E-05 4.4E-10 73.8 14.0 129 604-736 39-185 (198)
179 1kt0_A FKBP51, 51 kDa FK506-bi 98.2 1E-05 3.6E-10 85.4 14.6 129 640-772 270-415 (457)
180 1hxi_A PEX5, peroxisome target 98.2 8.7E-06 3E-10 67.8 11.1 93 641-736 20-113 (121)
181 1dce_A Protein (RAB geranylger 98.2 3.7E-05 1.3E-09 83.0 18.8 160 616-779 42-228 (567)
182 4b4t_Q 26S proteasome regulato 98.2 5.8E-05 2E-09 79.5 18.9 168 605-772 57-245 (434)
183 2xev_A YBGF; tetratricopeptide 98.2 3.7E-05 1.3E-09 64.8 14.1 92 643-737 7-105 (129)
184 3ro3_A PINS homolog, G-protein 98.1 1.4E-05 5E-10 70.5 11.3 133 604-736 10-157 (164)
185 1ihg_A Cyclophilin 40; ppiase 98.1 2.3E-05 8E-10 79.8 14.1 120 641-764 226-362 (370)
186 1zu2_A Mitochondrial import re 98.1 7.3E-06 2.5E-10 70.0 8.2 86 687-776 16-124 (158)
187 2hr2_A Hypothetical protein; a 98.1 3.4E-05 1.2E-09 66.0 12.3 91 642-736 15-130 (159)
188 1dce_A Protein (RAB geranylger 98.1 2.2E-05 7.5E-10 84.8 14.0 188 574-775 44-270 (567)
189 3rkv_A Putative peptidylprolyl 98.1 2.1E-05 7.3E-10 69.6 11.6 66 673-742 63-129 (162)
190 1klx_A Cysteine rich protein B 98.1 3.4E-05 1.2E-09 65.8 12.3 111 652-773 9-127 (138)
191 3k9i_A BH0479 protein; putativ 98.1 6E-06 2E-10 68.4 7.4 87 650-737 2-90 (117)
192 4b4t_Q 26S proteasome regulato 98.1 0.00011 3.8E-09 77.3 19.1 171 526-701 57-244 (434)
193 1kt0_A FKBP51, 51 kDa FK506-bi 98.1 2.2E-05 7.6E-10 82.8 12.3 124 652-779 248-387 (457)
194 1ihg_A Cyclophilin 40; ppiase 98.0 3.3E-05 1.1E-09 78.7 13.2 104 674-779 224-343 (370)
195 1wao_1 Serine/threonine protei 98.0 2.3E-05 8E-10 83.0 12.1 120 609-732 12-134 (477)
196 2if4_A ATFKBP42; FKBP-like, al 98.0 1.8E-05 6.1E-10 79.8 10.2 122 638-779 179-300 (338)
197 2kat_A Uncharacterized protein 98.0 3.3E-05 1.1E-09 63.6 9.7 83 691-775 3-85 (115)
198 2l6j_A TPR repeat-containing p 98.0 7.8E-06 2.7E-10 66.8 5.7 92 673-768 4-103 (111)
199 3n71_A Histone lysine methyltr 98.0 4.1E-05 1.4E-09 80.4 12.1 124 649-772 320-464 (490)
200 1klx_A Cysteine rich protein B 97.9 0.00032 1.1E-08 59.7 15.3 111 617-738 9-127 (138)
201 3ma5_A Tetratricopeptide repea 97.8 6.5E-05 2.2E-09 59.8 7.5 66 708-774 7-72 (100)
202 1zu2_A Mitochondrial import re 97.8 4.8E-05 1.6E-09 64.9 6.9 90 652-746 16-127 (158)
203 2l6j_A TPR repeat-containing p 97.7 0.00026 9E-09 57.4 11.3 69 707-776 3-71 (111)
204 3n71_A Histone lysine methyltr 97.7 0.00026 8.8E-09 74.4 13.2 125 612-736 318-463 (490)
205 1na3_A Designed protein CTPR2; 97.6 0.00054 1.8E-08 53.0 11.0 65 710-775 11-75 (91)
206 2kat_A Uncharacterized protein 97.6 0.00051 1.7E-08 56.2 10.6 78 656-736 3-81 (115)
207 3ly7_A Transcriptional activat 97.5 0.00089 3E-08 65.9 12.1 139 635-777 191-344 (372)
208 1na3_A Designed protein CTPR2; 97.5 0.0017 5.7E-08 50.1 11.6 82 172-255 8-89 (91)
209 2kc7_A BFR218_protein; tetratr 97.4 0.00025 8.4E-09 56.2 6.7 86 679-776 6-94 (99)
210 2kc7_A BFR218_protein; tetratr 97.4 0.0009 3.1E-08 52.8 10.0 68 713-781 5-73 (99)
211 1pc2_A Mitochondria fission pr 97.4 0.00066 2.3E-08 57.2 8.6 89 689-779 14-107 (152)
212 3ma5_A Tetratricopeptide repea 97.4 0.00072 2.5E-08 53.6 8.5 64 672-736 6-69 (100)
213 3qww_A SET and MYND domain-con 97.3 0.00072 2.5E-08 69.7 10.3 87 686-772 311-411 (433)
214 3qwp_A SET and MYND domain-con 97.3 0.0023 8E-08 66.1 13.1 92 681-772 295-400 (429)
215 3ly7_A Transcriptional activat 97.2 0.0045 1.5E-07 61.0 13.7 147 599-750 190-350 (372)
216 3bee_A Putative YFRE protein; 97.2 0.0021 7.2E-08 49.8 9.2 67 707-775 5-75 (93)
217 2v5f_A Prolyl 4-hydroxylase su 97.1 0.0023 7.9E-08 51.0 8.9 68 711-778 8-81 (104)
218 3qww_A SET and MYND domain-con 97.0 0.004 1.4E-07 64.2 11.8 86 651-736 311-410 (433)
219 3qwp_A SET and MYND domain-con 96.8 0.011 3.6E-07 61.1 13.4 91 646-736 295-399 (429)
220 3u64_A Protein TP_0956; tetrat 96.8 0.0095 3.3E-07 56.0 11.4 83 689-775 179-272 (301)
221 1nzn_A CGI-135 protein, fissio 96.7 0.0072 2.5E-07 48.8 8.5 97 688-786 16-118 (126)
222 1pc2_A Mitochondria fission pr 96.6 0.016 5.3E-07 48.8 10.3 85 619-707 14-103 (152)
223 3mkq_A Coatomer beta'-subunit; 96.5 0.096 3.3E-06 59.9 20.0 124 325-481 610-734 (814)
224 3bee_A Putative YFRE protein; 96.4 0.019 6.6E-07 44.2 9.2 65 671-737 4-72 (93)
225 3o48_A Mitochondria fission 1 96.4 0.045 1.6E-06 44.3 11.1 83 703-785 35-121 (134)
226 4h7y_A Dual specificity protei 96.4 0.08 2.7E-06 43.8 12.6 53 722-775 74-126 (161)
227 2v5f_A Prolyl 4-hydroxylase su 96.3 0.036 1.2E-06 43.9 10.4 69 672-742 4-78 (104)
228 1y8m_A FIS1; mitochondria, unk 96.2 0.13 4.4E-06 42.3 13.0 83 704-786 35-121 (144)
229 3mkq_B Coatomer subunit alpha; 96.1 0.12 4.1E-06 44.7 13.2 127 613-769 15-141 (177)
230 3mkq_A Coatomer beta'-subunit; 96.1 0.33 1.1E-05 55.4 21.5 28 602-629 680-707 (814)
231 4h7y_A Dual specificity protei 95.8 0.11 3.7E-06 43.0 10.9 114 635-751 10-136 (161)
232 3mkq_B Coatomer subunit alpha; 95.8 0.61 2.1E-05 40.3 16.0 100 324-444 15-114 (177)
233 3u64_A Protein TP_0956; tetrat 95.7 0.069 2.3E-06 50.3 10.5 104 654-769 179-295 (301)
234 3lvg_A Clathrin heavy chain 1; 95.6 1.6E-06 5.4E-11 86.2 -21.7 232 207-476 53-284 (624)
235 4ady_A RPN2, 26S proteasome re 95.4 4.7 0.00016 45.2 43.2 26 137-162 74-99 (963)
236 1wy6_A Hypothetical protein ST 95.0 1.1 3.7E-05 36.2 13.7 139 615-775 19-157 (172)
237 1nzn_A CGI-135 protein, fissio 95.0 0.1 3.4E-06 42.2 8.0 65 636-701 33-102 (126)
238 4b4t_P 26S proteasome regulato 93.8 3.7 0.00012 42.4 18.9 203 147-377 30-246 (445)
239 1wy6_A Hypothetical protein ST 93.4 2.6 8.9E-05 34.1 17.0 141 359-521 17-157 (172)
240 3txn_A 26S proteasome regulato 93.2 3.3 0.00011 41.5 16.8 169 604-773 20-211 (394)
241 4gns_B Protein CSD3, chitin bi 92.2 0.62 2.1E-05 51.0 10.6 129 211-340 251-397 (754)
242 1y8m_A FIS1; mitochondria, unk 92.0 2.6 8.9E-05 34.6 11.4 66 671-736 37-105 (144)
243 3o48_A Mitochondria fission 1 91.8 1.2 4.1E-05 36.1 9.2 67 670-736 37-106 (134)
244 2wpv_A GET4, UPF0363 protein Y 91.6 10 0.00034 36.5 19.3 24 232-255 81-104 (312)
245 1qsa_A Protein (soluble lytic 91.6 17 0.00058 39.1 25.4 134 395-539 17-151 (618)
246 4b4t_P 26S proteasome regulato 91.4 7.5 0.00026 40.0 17.5 172 599-772 52-247 (445)
247 1v54_E Cytochrome C oxidase po 90.5 1.4 4.7E-05 33.4 7.6 62 689-751 26-87 (109)
248 4gns_B Protein CSD3, chitin bi 90.4 1.6 5.6E-05 47.8 11.7 52 717-770 346-398 (754)
249 3lvg_A Clathrin heavy chain 1; 90.4 2E-05 6.7E-10 78.6 -23.8 262 454-767 54-315 (624)
250 4ady_A RPN2, 26S proteasome re 90.0 29 0.00098 39.0 52.7 266 462-746 382-664 (963)
251 3ffl_A Anaphase-promoting comp 89.6 1.1 3.7E-05 38.0 7.4 119 644-775 26-154 (167)
252 2ff4_A Probable regulatory pro 87.6 3.5 0.00012 41.6 11.3 70 676-747 174-249 (388)
253 1zbp_A Hypothetical protein VP 87.6 15 0.00052 34.0 14.1 53 648-701 7-59 (273)
254 2p58_C Putative type III secre 87.5 6.1 0.00021 29.8 9.2 80 292-379 20-99 (116)
255 3ffl_A Anaphase-promoting comp 87.3 4.7 0.00016 34.2 9.8 68 134-201 21-91 (167)
256 3txn_A 26S proteasome regulato 87.3 26 0.00087 35.1 20.9 91 285-375 105-207 (394)
257 2ff4_A Probable regulatory pro 87.2 3.6 0.00012 41.6 11.0 73 210-284 173-250 (388)
258 3lpz_A GET4 (YOR164C homolog); 86.9 23 0.00079 34.2 22.6 111 317-442 38-159 (336)
259 2y69_E Cytochrome C oxidase su 86.8 2.9 9.9E-05 33.7 7.6 60 691-751 71-130 (152)
260 3lpz_A GET4 (YOR164C homolog); 86.5 25 0.00084 34.1 23.6 105 183-302 45-159 (336)
261 2uwj_G Type III export protein 86.4 5.9 0.0002 29.9 8.5 80 292-379 19-98 (115)
262 2wpv_A GET4, UPF0363 protein Y 86.3 24 0.00083 33.8 25.1 24 491-514 35-58 (312)
263 1zbp_A Hypothetical protein VP 85.8 2.1 7.2E-05 39.7 7.5 54 682-736 6-59 (273)
264 4fhn_B Nucleoporin NUP120; pro 85.5 9.9 0.00034 44.8 15.2 88 490-579 900-991 (1139)
265 4fhn_B Nucleoporin NUP120; pro 84.2 14 0.00049 43.5 15.7 53 137-199 816-868 (1139)
266 1v54_E Cytochrome C oxidase po 84.1 12 0.00041 28.5 9.4 63 618-681 25-87 (109)
267 3esl_A Checkpoint serine/threo 83.6 13 0.00043 32.8 11.1 57 686-742 92-149 (202)
268 4b4t_R RPN7, 26S proteasome re 83.1 5.2 0.00018 41.0 10.2 97 640-736 133-236 (429)
269 3esl_A Checkpoint serine/threo 83.1 6.3 0.00022 34.7 9.0 71 635-706 74-148 (202)
270 4b4t_R RPN7, 26S proteasome re 80.4 11 0.00037 38.6 11.3 99 604-702 132-237 (429)
271 2y69_E Cytochrome C oxidase su 78.8 20 0.00067 29.0 9.4 63 618-681 68-130 (152)
272 2p58_C Putative type III secre 78.5 16 0.00054 27.7 8.2 78 688-773 22-99 (116)
273 2uwj_G Type III export protein 74.2 16 0.00053 27.6 7.2 78 688-773 21-98 (115)
274 4a1g_A Mitotic checkpoint seri 73.9 28 0.00095 29.1 9.7 53 690-742 82-135 (152)
275 2wvi_A Mitotic checkpoint seri 72.1 20 0.00069 30.4 8.7 54 690-743 77-131 (164)
276 4a1g_A Mitotic checkpoint seri 70.1 24 0.00082 29.5 8.5 57 724-780 81-138 (152)
277 1qsa_A Protein (soluble lytic 69.6 1.2E+02 0.0042 32.4 35.1 50 610-662 388-437 (618)
278 2wvi_A Mitotic checkpoint seri 69.4 46 0.0016 28.2 10.3 55 725-779 77-132 (164)
279 3kae_A CDC27, possible protein 60.1 33 0.0011 29.0 7.3 79 650-734 45-140 (242)
280 4aez_C MAD3, mitotic spindle c 59.0 21 0.00072 32.0 6.5 53 690-742 131-184 (223)
281 3mv2_A Coatomer subunit alpha; 58.9 42 0.0014 32.0 8.9 26 712-737 211-236 (325)
282 3pvs_A Replication-associated 53.5 1.6E+02 0.0054 30.1 13.2 55 685-739 267-326 (447)
283 2r9g_A AAA ATPase, central reg 51.8 1.2E+02 0.0042 26.5 10.3 88 685-773 26-121 (204)
284 3ctd_A Putative ATPase, AAA fa 48.9 1.3E+02 0.0045 26.5 9.6 98 675-773 34-142 (213)
285 4aez_C MAD3, mitotic spindle c 48.8 40 0.0014 30.2 6.7 84 693-779 97-186 (223)
286 3bu8_A Telomeric repeat-bindin 44.1 1.7E+02 0.0058 25.9 11.4 20 393-412 123-142 (235)
287 3eiq_C Programmed cell death p 43.9 1.5E+02 0.0052 28.9 10.6 63 492-555 220-284 (358)
288 3bge_A Predicted ATPase; struc 43.8 1.5E+02 0.0053 25.8 9.2 39 685-723 19-57 (201)
289 2qx5_A Nucleoporin NIC96; mRNA 43.6 3.4E+02 0.012 29.2 19.3 82 424-516 299-383 (661)
290 1wdy_A 2-5A-dependent ribonucl 42.0 58 0.002 30.3 7.5 7 395-401 113-119 (285)
291 3mv2_A Coatomer subunit alpha; 39.8 2.2E+02 0.0077 27.1 10.5 16 615-630 126-141 (325)
292 3bu8_A Telomeric repeat-bindin 39.3 1.1E+02 0.0039 27.0 7.6 21 752-772 123-143 (235)
293 3ax2_A Mitochondrial import re 39.2 51 0.0017 23.4 4.6 31 748-778 22-52 (73)
294 2d2s_A Exocyst complex compone 38.7 2.1E+02 0.0073 25.9 10.1 27 384-410 91-117 (235)
295 3kae_A CDC27, possible protein 38.1 1.9E+02 0.0064 24.6 14.5 38 738-775 201-240 (242)
296 2d2s_A Exocyst complex compone 37.3 2.4E+02 0.0081 25.6 12.0 52 557-608 89-140 (235)
297 4b4t_S RPN3, 26S proteasome re 36.3 2E+02 0.0069 29.8 10.4 64 604-667 232-299 (523)
298 3mkr_B Coatomer subunit alpha; 35.2 61 0.0021 30.9 6.0 18 649-666 113-130 (320)
299 3ltm_A Alpha-REP4; protein eng 34.3 2.3E+02 0.008 24.7 18.5 110 207-329 32-141 (211)
300 2nsz_A Programmed cell death p 33.6 1.6E+02 0.0054 23.7 7.6 95 641-736 10-110 (129)
301 3eu9_A Huntingtin-interacting 32.3 42 0.0015 30.3 4.6 14 214-227 45-58 (240)
302 3pvs_A Replication-associated 31.3 4.3E+02 0.015 26.8 13.3 55 361-415 267-326 (447)
303 1k1a_A B-cell lymphoma 3-encod 30.1 66 0.0023 29.0 5.6 13 325-337 87-99 (241)
304 2ijq_A Hypothetical protein; s 29.9 1.9E+02 0.0065 24.3 7.5 54 718-771 42-103 (161)
305 2ijq_A Hypothetical protein; s 29.9 2.5E+02 0.0085 23.6 8.7 52 185-236 44-103 (161)
306 3eiq_C Programmed cell death p 29.3 4.1E+02 0.014 25.9 12.6 75 317-392 220-296 (358)
307 4gq2_M Nucleoporin NUP120; bet 29.0 2E+02 0.0067 32.9 10.1 118 644-779 816-933 (950)
308 2qx5_A Nucleoporin NIC96; mRNA 28.7 5.8E+02 0.02 27.5 18.0 44 351-396 155-198 (661)
309 4b4t_S RPN3, 26S proteasome re 28.5 1.5E+02 0.0051 30.7 7.9 65 673-737 231-299 (523)
310 1k1a_A B-cell lymphoma 3-encod 27.7 1.2E+02 0.0042 27.1 7.0 16 325-340 17-32 (241)
311 3bqo_A Telomeric repeat-bindin 27.3 2E+02 0.0069 25.1 7.1 97 279-375 23-143 (211)
312 4gq2_M Nucleoporin NUP120; bet 26.2 2.8E+02 0.0096 31.7 10.7 133 137-293 814-950 (950)
313 2ion_A PDCD4, programmed cell 26.1 1.4E+02 0.0049 24.8 6.2 63 642-705 13-77 (152)
314 1ya0_A SMG-7 transcript varian 25.9 3.1E+02 0.011 28.3 10.0 79 641-721 155-233 (497)
315 3ltm_A Alpha-REP4; protein eng 25.3 3.3E+02 0.011 23.6 17.4 16 418-433 156-171 (211)
316 2zu6_B Programmed cell death p 25.2 1.7E+02 0.0059 27.9 7.4 63 353-416 170-234 (307)
317 3jxi_A Vanilloid receptor-rela 25.0 37 0.0013 31.4 2.8 19 220-238 14-32 (260)
318 2xig_A Ferric uptake regulatio 24.8 2.9E+02 0.01 22.7 8.1 58 305-363 18-75 (150)
319 2xig_A Ferric uptake regulatio 24.4 2.7E+02 0.0092 23.0 7.7 58 199-257 18-75 (150)
320 4b4t_O 26S proteasome regulato 24.1 5.3E+02 0.018 25.5 11.3 57 610-666 83-155 (393)
321 3kea_A K1L; tropism, ANK repea 23.7 1.4E+02 0.0047 28.0 6.6 18 426-443 165-182 (285)
322 1wdy_A 2-5A-dependent ribonucl 23.6 65 0.0022 30.0 4.3 15 182-196 11-25 (285)
323 3t8k_A Uncharacterized protein 23.4 2.6E+02 0.0089 23.9 7.9 22 395-416 46-67 (186)
324 3hra_A Ankyrin repeat family p 22.4 90 0.0031 27.1 4.7 13 395-407 80-92 (201)
325 1oyz_A Hypothetical protein YI 22.3 4.6E+02 0.016 24.0 23.6 150 621-789 128-278 (280)
326 2f6m_A Suppressor protein STP2 22.1 1.2E+02 0.0042 20.8 4.0 40 679-719 8-47 (65)
327 3kea_A K1L; tropism, ANK repea 21.5 1.5E+02 0.0052 27.7 6.4 20 390-409 164-183 (285)
328 2b7e_A PRE-mRNA processing pro 21.4 83 0.0029 21.1 3.0 29 331-359 3-31 (59)
329 2ion_A PDCD4, programmed cell 21.2 3.6E+02 0.012 22.4 8.5 24 423-446 13-36 (152)
330 3eu9_A Huntingtin-interacting 21.1 77 0.0027 28.4 4.1 6 502-507 220-225 (240)
331 2crb_A Nuclear receptor bindin 21.1 1.3E+02 0.0044 22.4 4.1 19 746-764 18-36 (97)
332 2r9g_A AAA ATPase, central reg 20.5 4.3E+02 0.015 23.1 10.4 12 331-342 31-42 (204)
333 3t8k_A Uncharacterized protein 20.2 4.1E+02 0.014 22.7 9.4 14 299-312 94-107 (186)
334 2f6m_A Suppressor protein STP2 20.1 1.7E+02 0.0057 20.2 4.3 48 710-758 4-51 (65)
335 3ubw_A 14-3-3E, 14-3-3 protein 20.1 5.1E+02 0.018 23.8 11.2 63 604-666 32-95 (261)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.2e-40 Score=369.35 Aligned_cols=514 Identities=11% Similarity=0.000 Sum_probs=333.8
Q ss_pred HHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHH
Q 003829 183 LGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNK 262 (793)
Q Consensus 183 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~~ 262 (793)
..+.|.+..+...+..+. .++...|+.++..|.+.|++++|+.+|++|.+. .|+..++..++.+|.+.| ++++
T Consensus 63 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g-~~~~ 135 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDS----LSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTG-DYAR 135 (597)
T ss_dssp -----------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTT-CHHH
T ss_pred ccccCccCCCCCccccch----HHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcC-cHHH
Confidence 345566655555555432 236778888888888888888888888888754 467778888888888888 7888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003829 263 IMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKI 342 (793)
Q Consensus 263 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 342 (793)
|..+|+++... .++..+++.++.+|.+.|++++|..+|+++.. +.. ...++.+.++ ..
T Consensus 136 A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~----~~~~~~~~~~-----------~~ 193 (597)
T 2xpi_A 136 AKCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNP-----FRK----DEKNANKLLM-----------QD 193 (597)
T ss_dssp HHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCT-----TC--------------C-----------CC
T ss_pred HHHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCC-----ccc----cccccccccc-----------cc
Confidence 88888876532 45677777777777777777777777764211 110 0001111111 11
Q ss_pred cCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH--HHH-HHHHHHCCCCCCH
Q 003829 343 NGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESA--MKV-FEEMRSAGCKPNI 419 (793)
Q Consensus 343 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a--~~~-~~~~~~~~~~~~~ 419 (793)
.+.+.+..+|+.++.+|.+.|++++|++.|++|.+.+ +.+...+..+...+...+..+.+ ..+ +..+...+.....
T Consensus 194 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 272 (597)
T 2xpi_A 194 GGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD-AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLR 272 (597)
T ss_dssp SSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHH
T ss_pred cccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHH
Confidence 2344466778888888888888888888888887764 22444455444433322222211 111 3334433333344
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003829 420 CTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAY 499 (793)
Q Consensus 420 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~ 499 (793)
.+|+.++.+|.+.|++++|.++|+++.+. +++..+|+.++..|.+.|++++|.++|+++.+.+.. +..++..++.++
T Consensus 273 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~ 349 (597)
T 2xpi_A 273 SLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASL 349 (597)
T ss_dssp HHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHH
T ss_pred HHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHH
Confidence 55666677777777777777777776654 356667777777777777777777777776665432 555666666666
Q ss_pred hccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHcCCCHHHHH
Q 003829 500 SRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQML 579 (793)
Q Consensus 500 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 579 (793)
.+.|++++|.++++++.+.... +..++..++..|.+.|++++|.++|+++.+..
T Consensus 350 ~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------------------------- 403 (597)
T 2xpi_A 350 HESGEKNKLYLISNDLVDRHPE-KAVTWLAVGIYYLCVNKISEARRYFSKSSTMD------------------------- 403 (597)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTT-SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------------------
T ss_pred HHhCCHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-------------------------
Confidence 6666666666666666644322 55566666666666666666666666554321
Q ss_pred HHHHHHHhHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 003829 580 ALSEEIYSERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAED 659 (793)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 659 (793)
+.+..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..+|+.++.+|.+.|++++|++
T Consensus 404 --------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 462 (597)
T 2xpi_A 404 --------------------PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANE 462 (597)
T ss_dssp --------------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHH
T ss_pred --------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHH
Confidence 2234456666666666677777777777776654 4577778888888888888888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHhcCChHHHHHHHHH
Q 003829 660 VLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDS----GLVPD--VITYNTFVASYAADSLFVEALDVVRY 733 (793)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~ 733 (793)
+|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|++++++
T Consensus 463 ~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 541 (597)
T 2xpi_A 463 YLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQ 541 (597)
T ss_dssp HHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 888888753 446778888888888888888888888888774 55676 67888888888888888888888888
Q ss_pred HHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCH
Q 003829 734 MIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTK 778 (793)
Q Consensus 734 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 778 (793)
+++.+ +.+..+|..++.+|.+.|++++|.++++++++.+|++..
T Consensus 542 ~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 585 (597)
T 2xpi_A 542 GLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIM 585 (597)
T ss_dssp HHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChH
Confidence 88753 336788888888888888888888888888888887543
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.8e-39 Score=361.72 Aligned_cols=503 Identities=11% Similarity=0.020 Sum_probs=376.6
Q ss_pred chHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003829 171 LRGSVIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVIL 250 (793)
Q Consensus 171 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll 250 (793)
.+...+..++..+.+.|++++|..+|+.+... .|+..++..++.+|.+.|++++|+.+|+++... .++..+++.++
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~ 157 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAA 157 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHH
Confidence 46778999999999999999999999999864 357789999999999999999999999998654 67899999999
Q ss_pred HHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 003829 251 NVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRP 330 (793)
Q Consensus 251 ~~~~~~g~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 330 (793)
.+|.+.| ++++|.++|+++. |+.. ...++.+.++ ...|...+..+|+.++.+|.+.|++
T Consensus 158 ~~~~~~g-~~~~A~~~~~~~~-----~~~~----~~~~~~~~~~-----------~~~~~~~~~~~~~~l~~~~~~~g~~ 216 (597)
T 2xpi_A 158 FCLVKLY-DWQGALNLLGETN-----PFRK----DEKNANKLLM-----------QDGGIKLEASMCYLRGQVYTNLSNF 216 (597)
T ss_dssp HHHHHTT-CHHHHHHHHCSSC-----TTC--------------C-----------CCSSCCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHh-hHHHHHHHHhccC-----Cccc----cccccccccc-----------cccccchhHHHHHHHHHHHHHcCCH
Confidence 9999999 9999999998532 2210 0111111111 1234566788899999999999999
Q ss_pred HHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHH--H-HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003829 331 KEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAME--L-KTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVF 407 (793)
Q Consensus 331 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~--~-~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~ 407 (793)
++|+++|++|.+.+ +.+...+..++..+...+..+.+.. + +..+...+......+|+.++..|.+.|++++|.++|
T Consensus 217 ~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 295 (597)
T 2xpi_A 217 DRAKECYKEALMVD-AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYL 295 (597)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHH
Confidence 99999999998763 2355566666665544433332221 1 455555544455567777788889999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC
Q 003829 408 EEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIP 487 (793)
Q Consensus 408 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~ 487 (793)
+++.+. +++..+++.++.+|.+.|++++|.++|+++.+.+ +.+..+|..++.++.+.|++++|..+++++.+.. +.
T Consensus 296 ~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~ 371 (597)
T 2xpi_A 296 SSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PE 371 (597)
T ss_dssp HTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TT
T ss_pred HHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cc
Confidence 998765 5789999999999999999999999999998765 3477889999999999999999999999998764 34
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHhhHHHHHH
Q 003829 488 ERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLH 567 (793)
Q Consensus 488 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 567 (793)
+..++..++..|.+.|++++|.++|+++.+.... +..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..++..++.
T Consensus 372 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 449 (597)
T 2xpi_A 372 KAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQ-FGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGM 449 (597)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHH
Confidence 7889999999999999999999999999886544 78899999999999999999999999988653 224444555555
Q ss_pred HHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 003829 568 AYANGREIDQMLALSEEIYSERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYM 647 (793)
Q Consensus 568 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 647 (793)
+|.+ .|++++|.++|+++.+.. +.+..+|+.++.+
T Consensus 450 ~~~~--------------------------------------------~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 484 (597)
T 2xpi_A 450 QHMQ--------------------------------------------LGNILLANEYLQSSYALF-QYDPLLLNELGVV 484 (597)
T ss_dssp HHHH--------------------------------------------HTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHH--------------------------------------------cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 5444 455555555555554432 3456666677777
Q ss_pred HHccCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 003829 648 YSRSENFARAEDVLREILAK----GIKPD--IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAAD 721 (793)
Q Consensus 648 ~~~~g~~~~A~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 721 (793)
|.+.|++++|+++|+++.+. +..|+ ..+|..++.+|.+.|++++|.++|+++.+.+. .+..+|..++.+|.+.
T Consensus 485 ~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~ 563 (597)
T 2xpi_A 485 AFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLST-NDANVHTAIALVYLHK 563 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS-CCHHHHHHHHHHHHHT
T ss_pred HHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHh
Confidence 77777777777777766654 44555 56777777777777777777777777776332 1567777777777777
Q ss_pred CChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHH
Q 003829 722 SLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGY 753 (793)
Q Consensus 722 g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~ 753 (793)
|++++|.+.++++++. .| +...+..+..+|
T Consensus 564 g~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~ 594 (597)
T 2xpi_A 564 KIPGLAITHLHESLAI--SPNEIMASDLLKRAL 594 (597)
T ss_dssp TCHHHHHHHHHHHHHH--CTTCHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHhc--CCCChHHHHHHHHHH
Confidence 7777777777777764 34 356666665544
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=1.8e-26 Score=242.48 Aligned_cols=365 Identities=11% Similarity=0.018 Sum_probs=180.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 003829 357 SAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFV 436 (793)
Q Consensus 357 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 436 (793)
..+.+.|++++|.+.++.+.+.. +.+...+..+...+...|++++|...++...+.. +.+...|..+...|.+.|+++
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHH
Confidence 33444555555555555554432 2233344444444455555555555555544432 234455555555555555555
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 003829 437 EMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRML 516 (793)
Q Consensus 437 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 516 (793)
+|++.|+++.... +.+...|..+..++...|++++|.+.|+++.+.... +...+..+...+...|++++|.+.|+++.
T Consensus 85 ~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al 162 (388)
T 1w3b_A 85 EAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 5555555554432 122334555555555555555555555555544321 33344455555555556666666555555
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHH
Q 003829 517 EAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSERAFLELKK 596 (793)
Q Consensus 517 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 596 (793)
+.... +..+|..+...+...|++++|...|+++...+ +.+...+..+...
T Consensus 163 ~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~---------------------------- 212 (388)
T 1w3b_A 163 ETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNV---------------------------- 212 (388)
T ss_dssp HHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH----------------------------
T ss_pred HhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHH----------------------------
Confidence 54322 44555555555555566666655555555431 1123333334444
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHH
Q 003829 597 KGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISY 676 (793)
Q Consensus 597 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 676 (793)
+...|++++|...+++..+.. +.+..++..++.+|...|++++|+..|+++.+.+ +.+..+|
T Consensus 213 ----------------~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~ 274 (388)
T 1w3b_A 213 ----------------LKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAY 274 (388)
T ss_dssp ----------------HHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHH
T ss_pred ----------------HHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHH
Confidence 444444444444444444332 2334445555555555555555555555555432 2234455
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 003829 677 NTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKL 756 (793)
Q Consensus 677 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 756 (793)
..++.++.+.|++++|.+.|+++++... .+..++..++.++...|++++|+..++++++. .+.+..++..++.+|.+.
T Consensus 275 ~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~ 352 (388)
T 1w3b_A 275 CNLANALKEKGSVAEAEDCYNTALRLCP-THADSLNNLANIKREQGNIEEAVRLYRKALEV-FPEFAAAHSNLASVLQQQ 352 (388)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS-CTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHc
Confidence 5555555555555555555555555211 13445555555555555555555555555542 122244555555555555
Q ss_pred CCHHHHHHHHHHHhhCCCC
Q 003829 757 NQRYEAITFVNNLSKLDPH 775 (793)
Q Consensus 757 g~~~~A~~~~~~~~~~~~~ 775 (793)
|++++|...++++++..|+
T Consensus 353 g~~~~A~~~~~~a~~~~p~ 371 (388)
T 1w3b_A 353 GKLQEALMHYKEAIRISPT 371 (388)
T ss_dssp TCCHHHHHHHHHHHTTCTT
T ss_pred CCHHHHHHHHHHHHhhCCC
Confidence 5555555555555555554
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=5.1e-26 Score=238.98 Aligned_cols=381 Identities=12% Similarity=0.054 Sum_probs=270.3
Q ss_pred HHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCC
Q 003829 180 ISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMP 259 (793)
Q Consensus 180 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~ 259 (793)
...+.+.|++++|.+.++.+.+..+. +...+..+...+...|++++|...++...+.. +.+..+|..+...|.+.| +
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g-~ 82 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQEPD-NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERG-Q 82 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT-C
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCC-C
Confidence 34555677777777777777665443 56666677777777777777777777777653 346677777777777777 7
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 003829 260 WNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLRE 339 (793)
Q Consensus 260 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 339 (793)
+++|++.|+++.+..+. +..+|..+..++.+.|++++|...|+++.+.. +.+...+..+...+...|++++|.+.|++
T Consensus 83 ~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 77777777777765322 45567777777777777777777777777653 22345566677777777788888877777
Q ss_pred HHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 003829 340 MKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNI 419 (793)
Q Consensus 340 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 419 (793)
+.+. .+.+..+|..+...+.+.|++++|++.|+++.+.+ +.+...+..+...+...|++++|...+++..... +.+.
T Consensus 161 al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~ 237 (388)
T 1w3b_A 161 AIET-QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHA 237 (388)
T ss_dssp HHHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCH
T ss_pred HHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCH
Confidence 7765 23355677777777777888888888887777764 3356667777777777788888888777776653 2356
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003829 420 CTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAY 499 (793)
Q Consensus 420 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~ 499 (793)
.++..+...|...|++++|++.|+++.+.+ +.+..+|..+...+.+.|++++|...|+++.+.. +.+..++..+...+
T Consensus 238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 315 (388)
T 1w3b_A 238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHH
Confidence 777777778888888888888888777653 3346677777788888888888888888877764 34677788888888
Q ss_pred hccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHcC
Q 003829 500 SRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANG 572 (793)
Q Consensus 500 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 572 (793)
...|++++|.+.++++.+.... +..++..+...+.+.|++++|...|+++.+.. +.+...+..+...+...
T Consensus 316 ~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~a~~~lg~~~~~~ 386 (388)
T 1w3b_A 316 REQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLKEM 386 (388)
T ss_dssp HTTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHhHHHHHHHc
Confidence 8888888888888888776433 57778888888888888888888888887642 22455566555555443
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=6.2e-29 Score=264.20 Aligned_cols=206 Identities=15% Similarity=0.162 Sum_probs=120.2
Q ss_pred HHHHHHHHHhhCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC--------CHH
Q 003829 191 VAASLLHGLHKDGFDIDV-YAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGM--------PWN 261 (793)
Q Consensus 191 ~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~--------~~~ 261 (793)
.++.+.+.+.+.+....+ ..++.+|++|++.|++++|+++|++|.+.|+.||..+||+||.+|++.+. ..+
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~ 87 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLS 87 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence 344445555555544443 35677778888888888888888888888888888888888888776551 135
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003829 262 KIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMK 341 (793)
Q Consensus 262 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 341 (793)
+|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.
T Consensus 88 ~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~ 167 (501)
T 4g26_A 88 RGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMV 167 (501)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHH
Confidence 55555555555555555556666555555555555555555555555555555555555555555555555555555555
Q ss_pred HcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 003829 342 INGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEK 396 (793)
Q Consensus 342 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 396 (793)
+.|+.||..+|++||.+|++.|++++|.++|++|.+.|..|+..||+.++..|+.
T Consensus 168 ~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 168 ESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred hcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 5555555555555555555555555555555555555555555555555555543
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=1.3e-28 Score=261.67 Aligned_cols=205 Identities=18% Similarity=0.302 Sum_probs=139.6
Q ss_pred HHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC---------H
Q 003829 226 EAVMVFKKMEEEGCKPTL-ITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSL---------H 295 (793)
Q Consensus 226 ~A~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~---------~ 295 (793)
.+..+.+++.+.+..... ..++.+|++|++.| ++++|.++|++|.+.|+.||..+|+++|.+|++.+. .
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G-~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKG-DVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSC-CHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 344555666665554443 34677777777777 777777777777777777777777777777776543 5
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003829 296 EEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQM 375 (793)
Q Consensus 296 ~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 375 (793)
++|.++|++|...|+.||..+|++||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 66777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 003829 376 VEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGN 431 (793)
Q Consensus 376 ~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 431 (793)
.+.|+.||..+|+.||.+|++.|++++|.+++++|.+.|..|+..||+.++..|+.
T Consensus 167 ~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 167 VESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred HhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 77777777777777777777777777777777777777777777777777776664
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=3e-24 Score=235.08 Aligned_cols=455 Identities=11% Similarity=-0.013 Sum_probs=274.5
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 003829 280 YTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAY 359 (793)
Q Consensus 280 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 359 (793)
..+......+.+.|++++|...|+++.+.+ |+...|..++.+|.+.|++++|+..++++.+.+ +.+..+|..++.+|
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHH
Confidence 345555555666666666666666666653 456666666666666666666666666665542 23445666666666
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003829 360 ARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMM 439 (793)
Q Consensus 360 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 439 (793)
.+.|++++|.+.|+++...+ +++......++..+........+.+.+..+...+..++......-......
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-------- 154 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDK-------- 154 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------------
T ss_pred HHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhh--------
Confidence 66666666666666666553 223333333333333333333333333333222222111111110000000
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc---cCCHHHHHHHHHHHH
Q 003829 440 KVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSR---CGSFDQAMSIYKRML 516 (793)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~ 516 (793)
....|+.......+..+...... .....+.+...+......+.. .|++++|...|+++.
T Consensus 155 --------~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 216 (514)
T 2gw1_A 155 --------QENLPSVTSMASFFGIFKPELTF----------ANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAA 216 (514)
T ss_dssp ----------CCCCHHHHHHHHTTSCCCCCC----------SSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHH
T ss_pred --------ccCCchhHHHHHHHhhcCHHHHH----------HHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHH
Confidence 00011111111111000000000 000001123344444444443 677888888887777
Q ss_pred H-----CCCC--------CCHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHH
Q 003829 517 E-----AGVT--------PDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSE 583 (793)
Q Consensus 517 ~-----~~~~--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 583 (793)
+ .... .+...+..+...+...|++++|...++++.+.. |+...+..+..++...|++++|+..++
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~ 294 (514)
T 2gw1_A 217 RLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFD 294 (514)
T ss_dssp HHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHH
T ss_pred HHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 6 3111 134566667777888888888888888877653 336677777788888888888888777
Q ss_pred HHHhHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 003829 584 EIYSERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLRE 663 (793)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 663 (793)
+++. ..+.+..++..++..+...|++++|...++++.+.. +.+...+..++..+...|++++|+..+++
T Consensus 295 ~~~~----------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 363 (514)
T 2gw1_A 295 KALK----------LDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSE 363 (514)
T ss_dssp HHHT----------TCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHH
T ss_pred HHhh----------cCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6542 123356677888888888888888888888888764 45677788888888888999999999988
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHh---cCChHHHHHHHHHHH
Q 003829 664 ILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLV-PD----VITYNTFVASYAA---DSLFVEALDVVRYMI 735 (793)
Q Consensus 664 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~ 735 (793)
+.+.. +.+...+..++.+|...|++++|..+++++.+.... ++ ...+..++.+|.. .|++++|+..+++++
T Consensus 364 ~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~ 442 (514)
T 2gw1_A 364 AKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKAS 442 (514)
T ss_dssp HHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHH
T ss_pred HHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHH
Confidence 88752 335678888888888889999999998888873211 11 2378888888888 888999999999888
Q ss_pred HcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHH
Q 003829 736 KQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKE 779 (793)
Q Consensus 736 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 779 (793)
+.. +.+..++..++.+|.+.|++++|...++++++.+|++...
T Consensus 443 ~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 485 (514)
T 2gw1_A 443 KLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEK 485 (514)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHH
T ss_pred HhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHH
Confidence 752 3357788888888889999999999999999888876554
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.93 E-value=4e-23 Score=226.14 Aligned_cols=459 Identities=8% Similarity=-0.046 Sum_probs=304.3
Q ss_pred CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003829 242 TLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALL 321 (793)
Q Consensus 242 ~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li 321 (793)
....+......+.+.| ++++|+..|+++.+.+ |+..++..+..++.+.|++++|...++++.+.+ +.+..+|..++
T Consensus 5 ~a~~~~~~g~~~~~~g-~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 80 (514)
T 2gw1_A 5 YALALKDKGNQFFRNK-KYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRA 80 (514)
T ss_dssp HHHHHHHHHHHHHHTS-CHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhc-cHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHH
Confidence 3567888899999999 9999999999999875 689999999999999999999999999999875 44678899999
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Q 003829 322 DVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDE 401 (793)
Q Consensus 322 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 401 (793)
.+|.+.|++++|...|+++...+ +++......++..+........+.+.+..+...+..|+...+..-........
T Consensus 81 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--- 156 (514)
T 2gw1_A 81 SANEGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQE--- 156 (514)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC------------------------------
T ss_pred HHHHHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhcc---
Confidence 99999999999999999998874 34555666666666665556666666655555544444332222111111111
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---CCChHHHHHHHH
Q 003829 402 SAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQ---NGMDSEVSGVFK 478 (793)
Q Consensus 402 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~ 478 (793)
..|+.......+..+...... . ....+.+...+......+.. .|++++|..+|+
T Consensus 157 -------------~~~~~~~~~~~~~~~~~~~~~----~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 213 (514)
T 2gw1_A 157 -------------NLPSVTSMASFFGIFKPELTF----A------NYDESNEADKELMNGLSNLYKRSPESYDKADESFT 213 (514)
T ss_dssp -------------CCCCHHHHHHHHTTSCCCCCC----S------SCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHH
T ss_pred -------------CCchhHHHHHHHhhcCHHHHH----H------HhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHH
Confidence 112222111111110000000 0 00001112333333333332 555666666666
Q ss_pred HHHH-----cCC--------CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 003829 479 EMKR-----AGF--------IPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEK 545 (793)
Q Consensus 479 ~m~~-----~~~--------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 545 (793)
++.+ ... +.+..++..+...+...|++++|...++++.+.... ...+..+...+...|++++|..
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~ 291 (514)
T 2gw1_A 214 KAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYN 291 (514)
T ss_dssp HHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGG
T ss_pred HHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHH
Confidence 5555 210 112345666677777777777777777777766433 6677777777777888888888
Q ss_pred HHHHHhcCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003829 546 IFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEI 625 (793)
Q Consensus 546 ~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 625 (793)
.++++.... +.+...+..+...+...|++++|+..+++++. . .+.+...+..++..+...|++++|...
T Consensus 292 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---------~-~~~~~~~~~~l~~~~~~~~~~~~A~~~ 360 (514)
T 2gw1_A 292 YFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKE---------L-DPENIFPYIQLACLAYRENKFDDCETL 360 (514)
T ss_dssp HHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHH---------T-CSSCSHHHHHHHHHTTTTTCHHHHHHH
T ss_pred HHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---------h-ChhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 887777643 33556677777777788888888887776542 1 133456777788888888888888888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHH---cCCHHHHHHHHH
Q 003829 626 LHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIK-PD----IISYNTVIFAYCR---NGRMKEASRIFS 697 (793)
Q Consensus 626 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~---~g~~~~A~~~~~ 697 (793)
++++.+.. +.+..++..++..+...|++++|...++++.+.... ++ ...|..++.++.. .|++++|.+.++
T Consensus 361 ~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~ 439 (514)
T 2gw1_A 361 FSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLE 439 (514)
T ss_dssp HHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHH
T ss_pred HHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHH
Confidence 88887763 456778888888999999999999999988864211 11 3378888899999 899999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHH
Q 003829 698 EMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPN-QNTYNS 748 (793)
Q Consensus 698 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~ 748 (793)
++.+.... +..++..++.+|...|++++|...++++++. .|+ ...+..
T Consensus 440 ~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~ 488 (514)
T 2gw1_A 440 KASKLDPR-SEQAKIGLAQMKLQQEDIDEAITLFEESADL--ARTMEEKLQA 488 (514)
T ss_dssp HHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSHHHHHHH
T ss_pred HHHHhCcc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--ccccHHHHHH
Confidence 99884322 5678889999999999999999999999884 455 444433
No 9
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.93 E-value=1.9e-22 Score=222.06 Aligned_cols=261 Identities=11% Similarity=0.046 Sum_probs=175.3
Q ss_pred CCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHcCCCH
Q 003829 503 GSFDQAMSIYKRMLEAGVTPDL-------STYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREI 575 (793)
Q Consensus 503 g~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 575 (793)
|++++|..+++++.+.... +. .++..+...+...|++++|...++++.+. .|+...+..+...+...|++
T Consensus 216 ~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~ 292 (537)
T 3fp2_A 216 DLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENS 292 (537)
T ss_dssp HHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCC
T ss_pred HHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCH
Confidence 3566777777776665333 22 23455556666777777777777777664 34466666777777777777
Q ss_pred HHHHHHHHHHHhHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHH
Q 003829 576 DQMLALSEEIYSERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFA 655 (793)
Q Consensus 576 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 655 (793)
++|+..+++++.. .+.+..++..++..+...|++++|...++++.+.. +.+...+..+..++...|+++
T Consensus 293 ~~A~~~~~~~~~~----------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~ 361 (537)
T 3fp2_A 293 QEFFKFFQKAVDL----------NPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFT 361 (537)
T ss_dssp HHHHHHHHHHHHH----------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHhcc----------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 7777777665431 13356677777777777888888888887777654 445667777777788888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-----CCCHHHHHHHHHHHHhc---------
Q 003829 656 RAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGL-----VPDVITYNTFVASYAAD--------- 721 (793)
Q Consensus 656 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~p~~~~~~~l~~~~~~~--------- 721 (793)
+|...++++.+.. +.+...+..++.++...|++++|.+.|+++.+... .-....+..++.++...
T Consensus 362 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 440 (537)
T 3fp2_A 362 ESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLD 440 (537)
T ss_dssp HHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CC
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhh
Confidence 8888888877752 33466777777888888888888888887775211 11123345556667776
Q ss_pred -CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHH
Q 003829 722 -SLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKE 779 (793)
Q Consensus 722 -g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 779 (793)
|++++|+..++++++.. +.+...+..++.+|.+.|++++|...++++++..|+.+..
T Consensus 441 ~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 498 (537)
T 3fp2_A 441 EEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEK 498 (537)
T ss_dssp HHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHH
T ss_pred HhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHH
Confidence 88888888888877642 2346777778888888888888888888888887776554
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.92 E-value=1.9e-21 Score=208.66 Aligned_cols=350 Identities=11% Similarity=0.086 Sum_probs=227.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 003829 383 DVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLA 462 (793)
Q Consensus 383 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 462 (793)
+...+..+...+.+.|++++|+.+|+++.+.. +.+..++..++.+|...|++++|.+.|+++.+.+ +.+...+..+..
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 102 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence 44555566666666666666666666665542 2345566666666666666666666666665543 223455555555
Q ss_pred HHHhCCChHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 003829 463 VFGQNGMDSEVSGVFKEMKRAGFIPER---DTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGM 539 (793)
Q Consensus 463 ~~~~~~~~~~a~~~~~~m~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 539 (793)
.|...|++++|...|+++.+.... +. ..+..++..+.. ..+..+...+...|+
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~-----------------------~~~~~~a~~~~~~~~ 158 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEM-----------------------QRLRSQALNAFGSGD 158 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTC
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHcCC
Confidence 666666666666666655554211 22 233333222100 011222334666777
Q ss_pred hHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 003829 540 WEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSERAFLELKKKGFSPDIPTLNAMISIYGRRQMV 619 (793)
Q Consensus 540 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 619 (793)
+++|...|+++.+.. +.+..++..+..+|...|++++|+..++++... .+.+..++..++..|...|++
T Consensus 159 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----------~~~~~~~~~~l~~~~~~~g~~ 227 (450)
T 2y4t_A 159 YTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKL----------KNDNTEAFYKISTLYYQLGDH 227 (450)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHH----------HCSCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----------CCCCHHHHHHHHHHHHHcCCH
Confidence 777777777776542 335666777777777777777777777765431 134567777777777788888
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHH------------HHHHHccCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHH
Q 003829 620 AKTNEILHFMNDSGFTPSLTTYNTL------------MYMYSRSENFARAEDVLREILAKGIKPD-----IISYNTVIFA 682 (793)
Q Consensus 620 ~~A~~~~~~~~~~~~~~~~~~~~~l------------~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~l~~~ 682 (793)
++|...|+++.+.. +.+...+..+ +..+...|++++|+..|+++.+. .|+ ...|..++.+
T Consensus 228 ~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~ 304 (450)
T 2y4t_A 228 ELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHC 304 (450)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHH
Confidence 88888887777653 3445555444 77888888899999998888875 344 3467788888
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHH---------
Q 003829 683 YCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPN-QNTYNSIVD--------- 751 (793)
Q Consensus 683 ~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~--------- 751 (793)
+.+.|++++|..+++++.+ ..| +..+|..++.+|...|++++|+..++++++ +.|+ ...+..+..
T Consensus 305 ~~~~g~~~~A~~~~~~a~~--~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~ 380 (450)
T 2y4t_A 305 FSKDEKPVEAIRVCSEVLQ--MEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQE--HNENDQQIREGLEKAQRLLKQSQ 380 (450)
T ss_dssp HHTTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TSSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHhhccc
Confidence 8888999999999988887 344 568888888888889999999999998887 3454 666666663
Q ss_pred ---HHHccC-----CHHHHHHHHHH-HhhCCCCC
Q 003829 752 ---GYCKLN-----QRYEAITFVNN-LSKLDPHV 776 (793)
Q Consensus 752 ---~~~~~g-----~~~~A~~~~~~-~~~~~~~~ 776 (793)
.|...| +.+++.+.+++ +++..|+.
T Consensus 381 ~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~ 414 (450)
T 2y4t_A 381 KRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDN 414 (450)
T ss_dssp SCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGG
T ss_pred chhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCC
Confidence 344445 66788888887 77777764
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.92 E-value=4.4e-21 Score=205.88 Aligned_cols=317 Identities=11% Similarity=0.051 Sum_probs=238.0
Q ss_pred cchHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003829 170 VLRGSVIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVI 249 (793)
Q Consensus 170 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 249 (793)
+.+..++..++..+.+.|++++|..+|+.+.+..+. +..++..++.++...|++++|+..|+++.+.+ +.+..++..+
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 100 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPD-NYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQR 100 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHH
Confidence 347788889999999999999999999999876444 78899999999999999999999999999875 3368889999
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHhCCCCCCH---HHHHHH------------HHHHHcCCCHHHHHHHHHHHHHCCCCCCH
Q 003829 250 LNVYGKMGMPWNKIMALVEGMKSAGVKPDS---YTFNTL------------ISCCRRGSLHEEAAGVFEEMKLAGFSPDK 314 (793)
Q Consensus 250 l~~~~~~g~~~~~a~~~~~~~~~~~~~p~~---~~~~~l------------~~~~~~~~~~~~A~~~~~~~~~~g~~~~~ 314 (793)
+..|.+.| ++++|...|+++.+.+.. +. ..+..+ ...+.+.|++++|..+|+++.+.. +.+.
T Consensus 101 ~~~~~~~g-~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~ 177 (450)
T 2y4t_A 101 GHLLLKQG-KLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDA 177 (450)
T ss_dssp HHHHHHTT-CHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHHHHcC-CHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCh
Confidence 99999999 899999999999886432 23 444444 334778889999999998888763 3467
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH----
Q 003829 315 VTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTL---- 390 (793)
Q Consensus 315 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l---- 390 (793)
..+..++.+|.+.|++++|.+.|+++.+. .+.+..+|..++..|...|++++|++.|+++.+.. +.+...+..+
T Consensus 178 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~ 255 (450)
T 2y4t_A 178 ELRELRAECFIKEGEPRKAISDLKAASKL-KNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVK 255 (450)
T ss_dssp HHHHHHHHHHHHTTCGGGGHHHHHHHHHH-HCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHH
Confidence 78888888899999999999999888775 33467788888888999999999999998888763 3344444433
Q ss_pred --------HHHHHHcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 003829 391 --------LSGFEKAGKDESAMKVFEEMRSAGCKPN----ICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWN 458 (793)
Q Consensus 391 --------i~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 458 (793)
...+...|++++|...|+++.+.... + ...+..+..++.+.|++++|++.++++.... +.+...|.
T Consensus 256 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~ 333 (450)
T 2y4t_A 256 KLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALK 333 (450)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHH
Confidence 66677777777777777777764211 2 3356667777777777777777777766542 33566777
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003829 459 TLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLI 496 (793)
Q Consensus 459 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~ 496 (793)
.+..+|...|++++|...++++.+.... +...+..+.
T Consensus 334 ~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 370 (450)
T 2y4t_A 334 DRAEAYLIEEMYDEAIQDYETAQEHNEN-DQQIREGLE 370 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 7777777777777777777777764322 344444443
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.91 E-value=2.9e-21 Score=212.61 Aligned_cols=448 Identities=11% Similarity=0.041 Sum_probs=254.4
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003829 172 RGSVIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILN 251 (793)
Q Consensus 172 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~ 251 (793)
....+......+.+.|++++|...|+.++...+. +..++..++.+|.+.|++++|+..|+++.+.+ +.+..++..+..
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~ 101 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPN-EPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHH
Confidence 4566777777888888888888888887776543 67778888888888888888888888887764 336667777777
Q ss_pred HHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCC
Q 003829 252 VYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAG--FSPDKVTYNALLDVYGKCRR 329 (793)
Q Consensus 252 ~~~~~g~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~ 329 (793)
.+...| ++++|...|+ .......+. ...+..+...+...+|...++++.... ..+........+..+....+
T Consensus 102 ~~~~~g-~~~~A~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (537)
T 3fp2_A 102 ANESLG-NFTDAMFDLS-VLSLNGDFD----GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFD 175 (537)
T ss_dssp HHHHHT-CHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSC
T ss_pred HHHHcC-CHHHHHHHHH-HHhcCCCCC----hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcC
Confidence 777777 7777777775 332221111 111223333344456666666654321 00011111223333444445
Q ss_pred hHHHHHHHHHHHHcCCCCChh-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003829 330 PKEAMQVLREMKINGCLPSIV-TYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFE 408 (793)
Q Consensus 330 ~~~A~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 408 (793)
.+.+...+..... ..+... ....+...+...+ -......|++++|..+++
T Consensus 176 ~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~---------------------------~~~~~a~~~~~~A~~~~~ 226 (537)
T 3fp2_A 176 SHLEVSSVNTSSN--YDTAYALLSDALQRLYSATD---------------------------EGYLVANDLLTKSTDMYH 226 (537)
T ss_dssp HHHHHHTSCCCCS--SCSSHHHHHHHHHHHHTCSH---------------------------HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhhccc--cccHHHHHHHHHHHHHHhhh---------------------------hhhHHHHHHHHHHHHHHH
Confidence 4444433333211 111111 1111111111110 000111234555555555
Q ss_pred HHHHCCCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 003829 409 EMRSAGCKPN-------ICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMK 481 (793)
Q Consensus 409 ~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 481 (793)
++.+.... + ..++..+...+...|++++|.+.++++... .|+...|..+...+...|++++|...++++.
T Consensus 227 ~~l~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 303 (537)
T 3fp2_A 227 SLLSANTV-DDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAV 303 (537)
T ss_dssp HHHC--CC-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHH
T ss_pred HHHHHCCC-cchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHh
Confidence 55544211 1 123445555666677777777777776665 3446666667777777777777777777777
Q ss_pred HcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHhh
Q 003829 482 RAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELT 561 (793)
Q Consensus 482 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 561 (793)
+.... +..++..+...+...|++++|.+.++++.+.... +...+..+...+...|++++|...++++.+.. +.+...
T Consensus 304 ~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~ 380 (537)
T 3fp2_A 304 DLNPE-YPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEV 380 (537)
T ss_dssp HHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHH
T ss_pred ccCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHH
Confidence 65432 5667777777788888888888888887776544 55677777788888888888888888877652 335667
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHh
Q 003829 562 YSSLLHAYANGREIDQMLALSEEIYSERAFLELKKKGFSPDIPTLNAMISIYGRR----------QMVAKTNEILHFMND 631 (793)
Q Consensus 562 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~ 631 (793)
+..+...+...|++++|...+++++... -...........+..+...+... |++++|...|+++.+
T Consensus 381 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~----~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 456 (537)
T 3fp2_A 381 PTFFAEILTDRGDFDTAIKQYDIAKRLE----EVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACE 456 (537)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHH----HHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHcC----CcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHH
Confidence 7777888888888888888887765311 00111111222233344444444 556666666655555
Q ss_pred CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 003829 632 SGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAK 667 (793)
Q Consensus 632 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 667 (793)
.. +.+..++..+..+|.+.|++++|...|+++.+.
T Consensus 457 ~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 457 LD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 43 344555555555555555555555555555553
No 13
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.88 E-value=8.5e-17 Score=180.20 Aligned_cols=552 Identities=11% Similarity=0.157 Sum_probs=379.9
Q ss_pred ccccHHHHHHHhccCCChHHHHHHHHHHHhccCCCCCccchHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHH
Q 003829 132 LGADLLGIVKGLGFHKKTDLALDVFEWFRSCCSKDGNLVLRGSVIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAY 211 (793)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 211 (793)
.+.++...++++...|.+.+|+++++.+.-. ...+..+....+.++....+. +.....++.+..... ..
T Consensus 984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl~---~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~-------d~ 1052 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTADLPNELIELLEKIVLD---NSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY-------DA 1052 (1630)
T ss_pred CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcC---CCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc-------cH
Confidence 3345677888899999999999999988641 111223455666666666666 445555555554322 13
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 003829 212 TSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRR 291 (793)
Q Consensus 212 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 291 (793)
..+...+...|.+++|..+|++.. -.....+.++. ..| ++++|.++.++.. +..+|..+..++..
T Consensus 1053 ~eIA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~-nldrAiE~Aervn------~p~vWsqLAKAql~ 1117 (1630)
T 1xi4_A 1053 PDIANIAISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIG-NLDRAYEFAERCN------EPAVWSQLAKAQLQ 1117 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHh-hHHHHHHHHHhcC------CHHHHHHHHHHHHh
Confidence 447788889999999999999963 13333444443 556 7999999998662 57889999999999
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 003829 292 GSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMEL 371 (793)
Q Consensus 292 ~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 371 (793)
.|++++|...|.+. -|...|..++..+.+.|++++|.+.|....+.. ++....+.++.+|++.+++++....
T Consensus 1118 ~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~f 1189 (1630)
T 1xi4_A 1118 KGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEF 1189 (1630)
T ss_pred CCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHH
Confidence 99999999999654 377888899999999999999999999877753 3333344589999999998864444
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 003829 372 KTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCK 451 (793)
Q Consensus 372 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 451 (793)
+ + .++...+..+...|...|++++|..+|... ..|..++..|++.|++++|.+.+++.
T Consensus 1190 I----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------ 1247 (1630)
T 1xi4_A 1190 I----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------ 1247 (1630)
T ss_pred H----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------
Confidence 2 2 346667778999999999999999999985 37999999999999999999999986
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003829 452 PDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVL 531 (793)
Q Consensus 452 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 531 (793)
.+..+|..+..+|...|++..|...... +..+...+..++..|.+.|.+++|+.+++..+... .-....|+-+.
T Consensus 1248 ~n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELa 1321 (1630)
T 1xi4_A 1248 NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELA 1321 (1630)
T ss_pred CCHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHH
Confidence 3679999999999999999998876553 33467778899999999999999999998887664 22445666666
Q ss_pred HHHHh--cCChHHHHHHHHHHhcCCCCC------CHhhHHHHHHHHHcCCCHHHHHHHHHHH----HhHHHHHHHHHCCC
Q 003829 532 AALAR--GGMWEQSEKIFAEMKGGRCKP------NELTYSSLLHAYANGREIDQMLALSEEI----YSERAFLELKKKGF 599 (793)
Q Consensus 532 ~~~~~--~g~~~~A~~~~~~~~~~~~~p------~~~~~~~l~~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~ 599 (793)
..+++ -++..++.++|..-.. +++ +...|..+...|.+.|+++.|....-+- .+...|++....
T Consensus 1322 iLyaKy~peklmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~k-- 1397 (1630)
T 1xi4_A 1322 ILYSKFKPQKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITK-- 1397 (1630)
T ss_pred HHHHhCCHHHHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcc--
Confidence 66665 3455566666654332 222 4567888999999999999998433221 123334443322
Q ss_pred CCCHHHHHHHHHHHHhcC---------------CHHHHHHHHHHHHhC----------CCCCCHHHHHHHHHHHHccCCH
Q 003829 600 SPDIPTLNAMISIYGRRQ---------------MVAKTNEILHFMNDS----------GFTPSLTTYNTLMYMYSRSENF 654 (793)
Q Consensus 600 ~~~~~~~~~l~~~~~~~g---------------~~~~A~~~~~~~~~~----------~~~~~~~~~~~l~~~~~~~g~~ 654 (793)
..+...|...+..|...+ +++++..+|.+.-.. ....+..+-..+.+.|....++
T Consensus 1398 v~n~elyykai~Fyl~~~P~~lndLl~~l~~rlD~~R~V~l~~~~~~l~lik~yl~~vq~~n~~~Vneal~el~ieeed~ 1477 (1630)
T 1xi4_A 1398 VANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDY 1477 (1630)
T ss_pred cccHHHHHHHHHHHHhhChHHHHHHHHHhhhcCChHHHHHHHHHcCChHHhHHHHHHHHHhcchhhhHHHHHHhcCccch
Confidence 346666766666666544 666666555521100 0012233333444445444444
Q ss_pred HHHHHHH------------HHHHHCCCCCCHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 003829 655 ARAEDVL------------REILAKGIKPDIISYNTVI-FAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAAD 721 (793)
Q Consensus 655 ~~A~~~~------------~~~~~~~~~~~~~~~~~l~-~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 721 (793)
+.-++-. +++.+. +..-+..+. ..|.++|+|+.|.+++.+... |.-.+.+..++
T Consensus 1478 ~~Lr~si~~~~nfd~~~La~~lekh----eLl~frrIAa~ly~~n~~~~~ai~l~k~d~l---------~~dAm~~a~~S 1544 (1630)
T 1xi4_A 1478 QALRTSIDAYDNFDNISLAQRLEKH----ELIEFRRIAAYLFKGNNRWKQSVELCKKDSL---------YKDAMQYASES 1544 (1630)
T ss_pred HHHHHHHhhccCcCHHHHHHHhhhh----hHHHHHHHHHHHHHhcCcHHHHHHHHHhccC---------HHHHHHHHHHc
Confidence 3221111 111111 112223333 344555889998888865432 55667778889
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 003829 722 SLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITF 765 (793)
Q Consensus 722 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 765 (793)
|+.+.+.+++.-..+.| +.+.|...+..|+..=+.|.+.++
T Consensus 1545 ~d~e~~e~ll~~F~~~~---~~E~f~a~Ly~cy~l~~pd~vle~ 1585 (1630)
T 1xi4_A 1545 KDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLET 1585 (1630)
T ss_pred CCHHHHHHHHHHHHhcC---ChhHHHHHHHHHhccCCchHHHHH
Confidence 99999988888888643 567787777777777777766653
No 14
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.88 E-value=1.2e-17 Score=180.47 Aligned_cols=394 Identities=13% Similarity=0.027 Sum_probs=229.9
Q ss_pred CHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCH
Q 003829 313 DKVTYNALLDVYGK----CRRPKEAMQVLREMKINGCLPSIVTYNSLISAYAR----DGLLEEAMELKTQMVEIGITPDV 384 (793)
Q Consensus 313 ~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~ 384 (793)
+...+..|...|.. .+++++|...|++..+.| +...+..|...|.. .++.++|.+.|++..+.| +.
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 111 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP 111 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 44444445444544 455555555555554432 33444445555554 455555555555554443 33
Q ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 003829 385 FTYTTLLSGFEK----AGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTL 460 (793)
Q Consensus 385 ~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 460 (793)
..+..+...|.. .+++++|...|++..+.| +...+..+..+|....
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~--------------------------- 161 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGD--------------------------- 161 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTS---------------------------
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCC---------------------------
Confidence 344444444444 444555555555544433 3334444444444300
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 003829 461 LAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSR----CGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALAR 536 (793)
Q Consensus 461 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 536 (793)
...++.++|.+.|++..+.+ +...+..+...|.. .+++++|.++|++..+.| +...+..+...|..
T Consensus 162 ----g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~ 231 (490)
T 2xm6_A 162 ----GVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYF 231 (490)
T ss_dssp ----SSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH
T ss_pred ----CCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHc
Confidence 00444555555555544432 34444555555544 555666666666555543 34455555555553
Q ss_pred ----cCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHc----CCCHHHHHHHHHHHHhHHHHHHHHHCCCCCCHHHHHH
Q 003829 537 ----GGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYAN----GREIDQMLALSEEIYSERAFLELKKKGFSPDIPTLNA 608 (793)
Q Consensus 537 ----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 608 (793)
.++.++|...|++..+.+ +...+..+...|.. .++.++|+.++++..+ ..+...+..
T Consensus 232 g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~------------~~~~~a~~~ 296 (490)
T 2xm6_A 232 GIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAE------------QGNSDGQYY 296 (490)
T ss_dssp TSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHT------------TTCHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH------------cCCHHHHHH
Confidence 556666666666665532 33444445555554 5666666666655431 124455666
Q ss_pred HHHHHHhc-----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC---CHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003829 609 MISIYGRR-----QMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSE---NFARAEDVLREILAKGIKPDIISYNTVI 680 (793)
Q Consensus 609 l~~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 680 (793)
+...|... +++++|...|++..+.+ +...+..+...|...| ++++|++.|++..+.+ +...+..+.
T Consensus 297 Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg 370 (490)
T 2xm6_A 297 LAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLG 370 (490)
T ss_dssp HHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 66666665 78888888888888765 5566777777777655 7888999999888863 677888888
Q ss_pred HHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCC-C-CHHHHHHHH
Q 003829 681 FAYCR----NGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAA----DSLFVEALDVVRYMIKQGCK-P-NQNTYNSIV 750 (793)
Q Consensus 681 ~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~-p-~~~~~~~l~ 750 (793)
..|.. .+++++|.++|+++.+.| +...+..|+..|.. .+++++|...|+++.+.+.. | +......+.
T Consensus 371 ~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~ 447 (490)
T 2xm6_A 371 NALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEK 447 (490)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHH
Confidence 88888 788999999999988854 46778888888887 78899999999998876532 2 344444444
Q ss_pred HHHHccCCHHHHHHHHHHHhhCCCCCCH
Q 003829 751 DGYCKLNQRYEAITFVNNLSKLDPHVTK 778 (793)
Q Consensus 751 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 778 (793)
..+. .+.++|.+..++..+..|+...
T Consensus 448 ~~~~--~~~~~a~~~a~~~~~~~~~~~~ 473 (490)
T 2xm6_A 448 KLTA--KQLQQAELLSQQYIEKYAPEAW 473 (490)
T ss_dssp TSCH--HHHHHHHHHHHHHHHHHCHHHH
T ss_pred hcCH--hHHHHHHHHHHHHHHHHHHHHH
Confidence 4333 3445566566666665554333
No 15
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.88 E-value=5.3e-19 Score=183.21 Aligned_cols=322 Identities=11% Similarity=0.084 Sum_probs=224.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003829 419 ICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISA 498 (793)
Q Consensus 419 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~ 498 (793)
...+..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|...++++.+.... +...+..+...
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~ 80 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD-FTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-cchHHHHHHHH
Confidence 3445555556666666666666666655432 223445555555555555555555555555554321 34455555555
Q ss_pred HhccCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHcCCCHH
Q 003829 499 YSRCGSFDQAMSIYKRMLEAGVT--PDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREID 576 (793)
Q Consensus 499 ~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 576 (793)
+...|++++|...++++.+.... .+...+..+...+. ...+..+...+...|+++
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~~ 137 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADYT 137 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCHH
Confidence 55555555555555555543210 01111111111100 011222356788899999
Q ss_pred HHHHHHHHHHhHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHH
Q 003829 577 QMLALSEEIYSERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFAR 656 (793)
Q Consensus 577 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 656 (793)
+|+..++++... .+.+...+..+...+...|++++|...++++.+.. +.+..++..++..+...|++++
T Consensus 138 ~A~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 206 (359)
T 3ieg_A 138 AAITFLDKILEV----------CVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHEL 206 (359)
T ss_dssp HHHHHHHHHHHH----------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHh----------CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 999998876531 24567889999999999999999999999999875 6788999999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHH------------HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHh
Q 003829 657 AEDVLREILAKGIKPDIISYN------------TVIFAYCRNGRMKEASRIFSEMRDSGLVPDV----ITYNTFVASYAA 720 (793)
Q Consensus 657 A~~~~~~~~~~~~~~~~~~~~------------~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~ 720 (793)
|...++++.+.. +.+...+. .++..+...|++++|...++++.+.... +. ..+..++.++..
T Consensus 207 A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~ 284 (359)
T 3ieg_A 207 SLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSK 284 (359)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHH
Confidence 999999999863 33344333 3367799999999999999999984322 22 335678899999
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHH
Q 003829 721 DSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKE 779 (793)
Q Consensus 721 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 779 (793)
.|++++|+..++++++.. +.+..++..++.+|.+.|++++|...++++++.+|++...
T Consensus 285 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~ 342 (359)
T 3ieg_A 285 DEKPVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQI 342 (359)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred ccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHH
Confidence 999999999999999852 3368899999999999999999999999999999986554
No 16
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.87 E-value=9.9e-16 Score=171.74 Aligned_cols=531 Identities=12% Similarity=0.119 Sum_probs=325.7
Q ss_pred HHHHHHhccCCChHHHHHHHHHHHhccCCCCCccchHHHHHHHHHHHHhcCChHHHHHH---------H-HHHhhCCCCC
Q 003829 137 LGIVKGLGFHKKTDLALDVFEWFRSCCSKDGNLVLRGSVIAVLISMLGKEGKVSVAASL---------L-HGLHKDGFDI 206 (793)
Q Consensus 137 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~---------~-~~~~~~~~~~ 206 (793)
..+++...++++...-+.+++.-.. ....++.+++.++.++...++-.+.+-. . +-..+.++..
T Consensus 843 ~~lv~~~ekrnrLkll~p~LE~~~~------~g~~~~~~hnalakiyid~n~npe~fL~~n~~yd~~~vgkyce~rDp~l 916 (1630)
T 1xi4_A 843 DELVAEVEKRNRLKLLLPWLEARIH------EGCEEPATHNALAKIYIDSNNNPERFLRENPYYDSRVVGKYCEKRDPHL 916 (1630)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh------CCCCCHHHHHHHHHHHhccCCCHHHHhhccCcccHHHHHHHHHhcCcch
Confidence 3344445555555444444444333 2335778899999998877654432110 0 0111111110
Q ss_pred CHHH------HHHHHHHHHHcCCHHHH-HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCC--CC
Q 003829 207 DVYA------YTSLITTYASNGRYREA-VMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGV--KP 277 (793)
Q Consensus 207 ~~~~------~~~l~~~~~~~g~~~~A-~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~~~--~p 277 (793)
...+ -.-||...-+++-++.. +.+.++ -|...|..++.- +-+.-..+.+......+ .-
T Consensus 917 a~iay~~g~~d~eli~vt~~n~l~k~~arylv~r-------~d~~lW~~vl~~------~n~~RR~Lidqv~a~aL~e~~ 983 (1630)
T 1xi4_A 917 ACVAYERGQCDLELINVCNENSLFKSLSRYLVRR-------KDPELWGSVLLE------SNPYRRPLIDQVVQTALSETQ 983 (1630)
T ss_pred HHHHhcccCCcHHHHHHHhcchhHHHHHHHHHHh-------cCHHHHHHHhcC------CcHHHHHHHHHHHHhhccccc
Confidence 0001 12344444445544332 222222 255566655521 11222233333222211 12
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHH
Q 003829 278 DSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGF--SPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSL 355 (793)
Q Consensus 278 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 355 (793)
|..-......+|...|.+.+|.+++++....+- .-+...-+.|+....+. +..+..++.++.... ....+
T Consensus 984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~-------d~~eI 1055 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY-------DAPDI 1055 (1630)
T ss_pred CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc-------cHHHH
Confidence 333445566778888999999999998884421 12345556666666665 556666666665321 13346
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 003829 356 ISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNF 435 (793)
Q Consensus 356 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 435 (793)
...+...|.+++|..+|++... .....+.++ ...|++++|.++.++. .+..+|..+..++...|++
T Consensus 1056 A~Iai~lglyEEAf~IYkKa~~-----~~~A~~VLi---e~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~ 1121 (1630)
T 1xi4_A 1056 ANIAISNELFEEAFAIFRKFDV-----NTSAVQVLI---EHIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMV 1121 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHHH---HHHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCH
Confidence 7778888999999998888521 122222222 2678888888888755 2577888888889999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 003829 436 VEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRM 515 (793)
Q Consensus 436 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 515 (793)
++|++.|.+. .|...|..++.++.+.|++++|.+.|....+.. ++......++.+|++.+++++...+.
T Consensus 1122 kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI--- 1190 (1630)
T 1xi4_A 1122 KEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI--- 1190 (1630)
T ss_pred HHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---
Confidence 9998888663 467788888888889999999999888777654 23333335888888888877543332
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHH
Q 003829 516 LEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSERAFLELK 595 (793)
Q Consensus 516 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 595 (793)
+ .++...|..+...|...|++++|..+|... ..|..+..++.+.|++++|++.+++.
T Consensus 1191 -~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA---------- 1247 (1630)
T 1xi4_A 1191 -N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA---------- 1247 (1630)
T ss_pred -h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh----------
Confidence 2 245666777888888889999999888875 36888888888888888888887642
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHH
Q 003829 596 KKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIIS 675 (793)
Q Consensus 596 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 675 (793)
.+..+|..+..+|...|+++.|......+ ..+...+..++..|.+.|.+++|+.+++..+... +-....
T Consensus 1248 -----~n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gm 1316 (1630)
T 1xi4_A 1248 -----NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGM 1316 (1630)
T ss_pred -----CCHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHH
Confidence 35577777777777778877777765532 3355666677788888888888888887777543 223445
Q ss_pred HHHHHHHHHHc--CCHHHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHhcCChHHHHHH-------------HHHH
Q 003829 676 YNTVIFAYCRN--GRMKEASRIFSEMRDSGLVP------DVITYNTFVASYAADSLFVEALDV-------------VRYM 734 (793)
Q Consensus 676 ~~~l~~~~~~~--g~~~~A~~~~~~~~~~~~~p------~~~~~~~l~~~~~~~g~~~~A~~~-------------~~~~ 734 (793)
|..+...|++. ++..++.++|..-.+ +.+ +...|..++..|.+.|+++.|+.. |+..
T Consensus 1317 ftELaiLyaKy~peklmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~ 1394 (1630)
T 1xi4_A 1317 FTELAILYSKFKPQKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDI 1394 (1630)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHH
Confidence 55555555543 455666666654433 222 345677777788888888877622 2222
Q ss_pred HHcCCCCCHHHHHHHHHHHHccC
Q 003829 735 IKQGCKPNQNTYNSIVDGYCKLN 757 (793)
Q Consensus 735 ~~~~~~p~~~~~~~l~~~~~~~g 757 (793)
+. ...|.+.|...+..|...+
T Consensus 1395 i~--kv~n~elyykai~Fyl~~~ 1415 (1630)
T 1xi4_A 1395 IT--KVANVELYYRAIQFYLEFK 1415 (1630)
T ss_pred hc--ccccHHHHHHHHHHHHhhC
Confidence 21 1335666766666666555
No 17
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.87 E-value=3.4e-17 Score=176.93 Aligned_cols=365 Identities=15% Similarity=0.082 Sum_probs=287.0
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHH
Q 003829 369 MELKTQMVEIGITPDVFTYTTLLSGFEK----AGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGN----RGNFVEMMK 440 (793)
Q Consensus 369 ~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~ 440 (793)
++.++...+.| +...+..+...|.. .+++++|...|+...+.| +...+..|...|.. .++.++|.+
T Consensus 27 ~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~ 100 (490)
T 2xm6_A 27 LEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVI 100 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 34444444433 45555555555555 566667777766666653 45566666666666 667777777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHh----CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----cCCHHHHHHHH
Q 003829 441 VFDEINKCNCKPDIVTWNTLLAVFGQ----NGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSR----CGSFDQAMSIY 512 (793)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~ 512 (793)
.|++..+.+ +...+..|...|.. .+++++|...|++..+.| +...+..+...|.. .+++++|.+.|
T Consensus 101 ~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 174 (490)
T 2xm6_A 101 WYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWY 174 (490)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 777766643 45556666666666 667777777777777664 56677777777776 78999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHc----CCCHHHHHHHHHH
Q 003829 513 KRMLEAGVTPDLSTYNAVLAALAR----GGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYAN----GREIDQMLALSEE 584 (793)
Q Consensus 513 ~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~ 584 (793)
++..+.| +...+..+...|.. .++.++|...|++..+.+ +...+..+...|.. .+++++|+.++++
T Consensus 175 ~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~ 248 (490)
T 2xm6_A 175 SKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQ 248 (490)
T ss_dssp HHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 9999874 77888888888887 899999999999998754 56777778888875 7899999999887
Q ss_pred HHhHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc-----CCHH
Q 003829 585 IYSERAFLELKKKGFSPDIPTLNAMISIYGR----RQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRS-----ENFA 655 (793)
Q Consensus 585 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~ 655 (793)
... ..+...+..+...|.. .++.++|.+.|++..+.| +...+..+...|... ++++
T Consensus 249 a~~------------~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~ 313 (490)
T 2xm6_A 249 SAE------------QGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNRE 313 (490)
T ss_dssp HHT------------TTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHH
T ss_pred HHH------------CCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHH
Confidence 543 2356777788888877 899999999999998865 667788888888877 8999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHH
Q 003829 656 RAEDVLREILAKGIKPDIISYNTVIFAYCRNG---RMKEASRIFSEMRDSGLVPDVITYNTFVASYAA----DSLFVEAL 728 (793)
Q Consensus 656 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~ 728 (793)
+|+..|++..+.+ +...+..+...|...| ++++|.++|++..+.| +...+..|+..|.. .+++++|+
T Consensus 314 ~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~ 387 (490)
T 2xm6_A 314 QAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAA 387 (490)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 9999999999865 5677888888888866 8999999999999953 67889999999998 89999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHhhCCCC
Q 003829 729 DVVRYMIKQGCKPNQNTYNSIVDGYCK----LNQRYEAITFVNNLSKLDPH 775 (793)
Q Consensus 729 ~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~ 775 (793)
+.++++.+.| +...+..|+..|.+ .+++++|..+++++.+.+|+
T Consensus 388 ~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 388 IWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence 9999999865 57888899999988 89999999999999999965
No 18
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.86 E-value=9e-18 Score=173.92 Aligned_cols=332 Identities=12% Similarity=0.058 Sum_probs=186.7
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003829 172 RGSVIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILN 251 (793)
Q Consensus 172 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~ 251 (793)
+...+..+...+...|++++|...|+.+++..+. +..++..++.++...|++++|+..|+++.+.. +.+...|..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPD-NYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 3456677777778888888888888887776443 67778888888888888888888888887764 236677778888
Q ss_pred HHHhcCCCHHHHHHHHHHHHhCCCC--CCHHHHHHH------------HHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHH
Q 003829 252 VYGKMGMPWNKIMALVEGMKSAGVK--PDSYTFNTL------------ISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTY 317 (793)
Q Consensus 252 ~~~~~g~~~~~a~~~~~~~~~~~~~--p~~~~~~~l------------~~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~ 317 (793)
.+...| ++++|...++++.+.... .+...+..+ ...+...|++++|..+++++.+.. +.+...+
T Consensus 80 ~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 157 (359)
T 3ieg_A 80 LLLKQG-KLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELR 157 (359)
T ss_dssp HHHHHT-CHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHcC-ChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHH
Confidence 888888 788888888887765431 122233333 234445555555555555554442 2234445
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 003829 318 NALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKA 397 (793)
Q Consensus 318 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 397 (793)
..+...+...|++++|...++++.+. .+.+..++..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 158 ~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~---- 231 (359)
T 3ieg_A 158 ELRAECFIKEGEPRKAISDLKAASKL-KSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQV---- 231 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTT-CSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH----
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHH----
Confidence 55555555555555555555555443 22234445555555555555555555555554432 1121111111000
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhCCChHHH
Q 003829 398 GKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDI----VTWNTLLAVFGQNGMDSEV 473 (793)
Q Consensus 398 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a 473 (793)
. .......+...+.+.|++++|.+.++++.+.... +. ..+..+...+...|++++|
T Consensus 232 -------------~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A 291 (359)
T 3ieg_A 232 -------------K------KLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEA 291 (359)
T ss_dssp -------------H------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred -------------H------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHH
Confidence 0 0000112244455666666666666665554211 11 2233455566666666666
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003829 474 SGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALA 535 (793)
Q Consensus 474 ~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 535 (793)
...+++..+... .+..++..+...+...|++++|.+.|+++.+.... +...+..+..+..
T Consensus 292 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 292 IRICSEVLQMEP-DNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNEN-DQQIREGLEKAQR 351 (359)
T ss_dssp HHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHH
Confidence 666666665532 25556666666666677777777777766665433 4455555544443
No 19
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.82 E-value=1e-17 Score=171.33 Aligned_cols=284 Identities=10% Similarity=-0.023 Sum_probs=143.9
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003829 453 DIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLA 532 (793)
Q Consensus 453 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 532 (793)
+...+..+...+...|++++|..+|+++.+.... +...+..++..+...|++++|..+++++.+.... +...+..+..
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~ 98 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPF-HASCLPVHIGTLVELNKANELFYLSHKLVDLYPS-NPVSWFAVGC 98 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHH
Confidence 3444445555555555555555555555554322 3344444555555666666666666666554332 4455555555
Q ss_pred HHHhcC-ChHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCCCHHHHHHHHH
Q 003829 533 ALARGG-MWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSERAFLELKKKGFSPDIPTLNAMIS 611 (793)
Q Consensus 533 ~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 611 (793)
.+...| ++++|...|+++.... +.+...+..+...+...|++++|+..++++... .+.+...+..+..
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~----------~~~~~~~~~~l~~ 167 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQL----------MKGCHLPMLYIGL 167 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----------TTTCSHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh----------ccccHHHHHHHHH
Confidence 666666 5666666666655432 223444555555555555555555555443320 0112333444555
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC--------CCCCHHHHHHHHHHH
Q 003829 612 IYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKG--------IKPDIISYNTVIFAY 683 (793)
Q Consensus 612 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~~~~~l~~~~ 683 (793)
.+...|++++|...++++.+.. +.+...+..++..+...|++++|...++++.+.. .+.+..++..++.+|
T Consensus 168 ~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~ 246 (330)
T 3hym_B 168 EYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVC 246 (330)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHH
Confidence 5555555555555555555543 3444555555555555555555555555555421 011234555555555
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHH
Q 003829 684 CRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGY 753 (793)
Q Consensus 684 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~ 753 (793)
...|++++|...++++.+.... +...+..++.+|...|++++|.+.++++++. .| +...+..++.++
T Consensus 247 ~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 247 RKLKKYAEALDYHRQALVLIPQ-NASTYSAIGYIHSLMGNFENAVDYFHTALGL--RRDDTFSVTMLGHCI 314 (330)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT--CSCCHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHhccHHHHHHHHHHHHcc--CCCchHHHHHHHHHH
Confidence 5555555555555555552111 2344555555555555555555555555442 23 344455555544
No 20
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.82 E-value=9.7e-18 Score=171.41 Aligned_cols=287 Identities=13% Similarity=0.000 Sum_probs=240.7
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHhhHHHH
Q 003829 486 IPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSL 565 (793)
Q Consensus 486 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 565 (793)
..+...+..++..+...|++++|.++|+++.+.... +...+..++..+...|++++|..+++++.+.. +.+...+..+
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 96 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPF-HASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAV 96 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence 446667888889999999999999999999987554 55667777888899999999999999998753 3467788889
Q ss_pred HHHHHcCC-CHHHHHHHHHHHHhHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 003829 566 LHAYANGR-EIDQMLALSEEIYSERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTL 644 (793)
Q Consensus 566 ~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 644 (793)
...+...| ++++|...+++++. . .+.+...+..++..+...|++++|...++++.+.. +.+...+..+
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~---------~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 165 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATT---------L-EKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYI 165 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHT---------T-CTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHH---------h-CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHH
Confidence 99999999 99999999887643 1 23457789999999999999999999999999875 4566778889
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC--------CCCHHHHHHHHH
Q 003829 645 MYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGL--------VPDVITYNTFVA 716 (793)
Q Consensus 645 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--------~p~~~~~~~l~~ 716 (793)
...|...|++++|...++++.+.. +.+...+..++..+...|++++|..+++++.+... ..+..++..++.
T Consensus 166 ~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~ 244 (330)
T 3hym_B 166 GLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGH 244 (330)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHH
Confidence 999999999999999999999863 44678999999999999999999999999987310 223478999999
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 003829 717 SYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKELECKLSDRI 788 (793)
Q Consensus 717 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l 788 (793)
+|...|++++|+..++++++.. +.+...+..++.+|.+.|++++|...++++++.+|++.. .+..+...+
T Consensus 245 ~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~l~~~~ 314 (330)
T 3hym_B 245 VCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTF-SVTMLGHCI 314 (330)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHH-HHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchH-HHHHHHHHH
Confidence 9999999999999999999853 335788999999999999999999999999999998544 344444433
No 21
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.82 E-value=5.1e-16 Score=169.57 Aligned_cols=220 Identities=8% Similarity=0.001 Sum_probs=153.6
Q ss_pred HHHHHHHHHhcCCCCCCHhhHHHHHHHHHc-------CCCHH-------HHHHHHHHHHhHHHHHHHHHCCCCCCHHHHH
Q 003829 542 QSEKIFAEMKGGRCKPNELTYSSLLHAYAN-------GREID-------QMLALSEEIYSERAFLELKKKGFSPDIPTLN 607 (793)
Q Consensus 542 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 607 (793)
.+..+|++..... +.+...|..++..+.. .|+++ +|..++++.+. .-.+.+...+.
T Consensus 256 ~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~---------~~~p~~~~l~~ 325 (530)
T 2ooe_A 256 RVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIS---------TLLKKNMLLYF 325 (530)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTT---------TTCSSCHHHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHH---------HhCcccHHHHH
Confidence 5666666666541 3355566666665553 57765 77777775431 01233567777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHH
Q 003829 608 AMISIYGRRQMVAKTNEILHFMNDSGFTPSL-TTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFA-YCR 685 (793)
Q Consensus 608 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~ 685 (793)
.++..+.+.|++++|..+|+++.+.. +.+. ..|..++..+.+.|++++|+++|++..+.. +.+...|...+.. +..
T Consensus 326 ~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~ 403 (530)
T 2ooe_A 326 AYADYEESRMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYC 403 (530)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSS-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHhCcc-ccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHH
Confidence 88888888888888888888888753 2233 478888888888888888998888888752 2233333333322 345
Q ss_pred cCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCC--HHHHHHHHHHHHccCCHHH
Q 003829 686 NGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSLFVEALDVVRYMIKQG-CKPN--QNTYNSIVDGYCKLNQRYE 761 (793)
Q Consensus 686 ~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~--~~~~~~l~~~~~~~g~~~~ 761 (793)
.|+.++|..+|+++++. .| +...+..++..+.+.|+.++|..+|+++++.+ ..|+ ...|...+......|+.+.
T Consensus 404 ~~~~~~A~~~~e~al~~--~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~ 481 (530)
T 2ooe_A 404 SKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLAS 481 (530)
T ss_dssp TCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHH
T ss_pred cCChhHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 78899999999988873 34 46788888888888899999999999988753 2232 4477777887888899999
Q ss_pred HHHHHHHHhhCCCC
Q 003829 762 AITFVNNLSKLDPH 775 (793)
Q Consensus 762 A~~~~~~~~~~~~~ 775 (793)
+..+.+++.+..|+
T Consensus 482 ~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 482 ILKVEKRRFTAFRE 495 (530)
T ss_dssp HHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHCch
Confidence 99999888888773
No 22
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.81 E-value=4e-16 Score=170.41 Aligned_cols=414 Identities=12% Similarity=0.067 Sum_probs=248.5
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 003829 302 FEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGIT 381 (793)
Q Consensus 302 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 381 (793)
+++.++.. +-+...|..++. +.+.|++++|..+|+++.+. .+.+...|..++..+.+.|++++|.++|++++.. .
T Consensus 2 le~al~~~-P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~ 76 (530)
T 2ooe_A 2 AEKKLEEN-PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--V 76 (530)
T ss_dssp HHHHHHHC-TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--C
T ss_pred hhhHhhhC-CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--C
Confidence 45555542 346778888887 47789999999999999875 4556778899999999999999999999998876 3
Q ss_pred CCHHHHHHHHHHH-HHcCCHHHHHH----HHHHHHHC-CCC-CCHHHHHHHHHHHHh---------cCCHHHHHHHHHHH
Q 003829 382 PDVFTYTTLLSGF-EKAGKDESAMK----VFEEMRSA-GCK-PNICTFNALIKMHGN---------RGNFVEMMKVFDEI 445 (793)
Q Consensus 382 ~~~~~~~~li~~~-~~~g~~~~a~~----~~~~~~~~-~~~-~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~ 445 (793)
|+...|...+... ...|++++|.+ +|+..+.. |.. .+...|...+....+ .|+++.|..+|++.
T Consensus 77 p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~a 156 (530)
T 2ooe_A 77 LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRG 156 (530)
T ss_dssp CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHH
Confidence 5776666666433 34577766655 66665542 433 346677777776554 67788888888887
Q ss_pred HhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH------HCC
Q 003829 446 NKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRML------EAG 519 (793)
Q Consensus 446 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~------~~~ 519 (793)
+..........|..........| ..+...++. ...++++.|..++.... +..
T Consensus 157 l~~P~~~~~~~~~~~~~~e~~~~--------------------~~~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~ 214 (530)
T 2ooe_A 157 CVNPMINIEQLWRDYNKYEEGIN--------------------IHLAKKMIE--DRSRDYMNARRVAKEYETVMKGLDRN 214 (530)
T ss_dssp TTSCCTTHHHHHHHHHHHHHHHC--------------------HHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSS
T ss_pred HhchhhhHHHHHHHHHHHHHhhc--------------------hhHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhccc
Confidence 76311111123322221110001 001111110 12344555555555421 111
Q ss_pred ---CCCCH--------HHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCH--------hhHHHHHHHHHcCCCHHHHHH
Q 003829 520 ---VTPDL--------STYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNE--------LTYSSLLHAYANGREIDQMLA 580 (793)
Q Consensus 520 ---~~~~~--------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--------~~~~~l~~~~~~~~~~~~a~~ 580 (793)
+.|+. ..|...+... .-...+.. +. ..|...+.. ......+.-
T Consensus 215 ~~~~~p~~~~~~~~~~~~w~~~~~~e--------------~~~~~~~~-~~~~~~~~a~~~y~~al~~---~p~~~~~w~ 276 (530)
T 2ooe_A 215 APSVPPQNTPQEAQQVDMWKKYIQWE--------------KSNPLRTE-DQTLITKRVMFAYEQCLLV---LGHHPDIWY 276 (530)
T ss_dssp SCCCCCC--CCHHHHHHHHHHHHHHH--------------HHCSSCCS-CSHHHHHHHHHHHHHHHHH---HTTCHHHHH
T ss_pred cccCCCCCChhHHHHHHHHHHHHHHH--------------HcCCccCC-cchhHHHHHHHHHHHHHHh---CCCCHHHHH
Confidence 12221 1121111100 00000000 10 012222211 111111111
Q ss_pred HHHHHHhHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 003829 581 LSEEIYSERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDV 660 (793)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 660 (793)
.+-.+... ....+...|- .+. . . ...++|..+|++..+.-.+.+...|..++..+.+.|++++|..+
T Consensus 277 ~~~~~~~~-~~~~~~~~g~-~~~--a----~-----~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~ 343 (530)
T 2ooe_A 277 EAAQYLEQ-SSKLLAEKGD-MNN--A----K-----LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSI 343 (530)
T ss_dssp HHHHHHHH-HHHHHHTTTC-CHH--H----H-----HHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHH-hchhhhhccc-hhh--h----h-----hhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHH
Confidence 11111000 0000001221 110 0 0 01678899999998632356788999999999999999999999
Q ss_pred HHHHHHCCCCCC-H-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCChHHHHHHHHHHHHc
Q 003829 661 LREILAKGIKPD-I-ISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVAS-YAADSLFVEALDVVRYMIKQ 737 (793)
Q Consensus 661 ~~~~~~~~~~~~-~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~ 737 (793)
|+++++. .|+ . ..|..++..+.+.|++++|.++|+++++.... +...|...+.. +...|+.++|..+|+++++.
T Consensus 344 ~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~-~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~ 420 (530)
T 2ooe_A 344 YNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKK 420 (530)
T ss_dssp HHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC-CTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC-chHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Confidence 9999985 454 3 58999999999999999999999999984221 33444443333 34689999999999999885
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCC
Q 003829 738 GCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVT 777 (793)
Q Consensus 738 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 777 (793)
. +.+...|..++..+.+.|+.++|+.+++++++..|.++
T Consensus 421 ~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~ 459 (530)
T 2ooe_A 421 Y-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 459 (530)
T ss_dssp H-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCG
T ss_pred C-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCH
Confidence 2 33588999999999999999999999999999876543
No 23
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.79 E-value=1e-16 Score=172.86 Aligned_cols=304 Identities=7% Similarity=-0.047 Sum_probs=168.6
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH---HHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----cCCH
Q 003829 433 GNFVEMMKVFDEINKCNCKPDIVTWNTLLAV---FGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSR----CGSF 505 (793)
Q Consensus 433 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~----~g~~ 505 (793)
+++++|++.|++..+.. +-+...+..+..+ +...++.++|++.+++..+.... +...+..+...+.. .|++
T Consensus 152 ~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~-~~~~~~~l~~~~~~~~~~~~~~ 229 (472)
T 4g1t_A 152 NQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD-NQYLKVLLALKLHKMREEGEEE 229 (472)
T ss_dssp THHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS-CHHHHHHHHHHHHHCC------
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc-chHHHHHHHHHHHHHHhhhhHH
Confidence 34556666666555442 1123333333322 23445566666666666655322 44444444443332 3556
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHH
Q 003829 506 DQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEI 585 (793)
Q Consensus 506 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 585 (793)
++|.+.+++....... +...+..+...|...|++++|...+++..+.. +.+..++..+..+|...+....+
T Consensus 230 ~~a~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~~~~~~~~~------- 300 (472)
T 4g1t_A 230 GEGEKLVEEALEKAPG-VTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIGCCYRAKVFQVMN------- 300 (472)
T ss_dssp CHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHhhh-------
Confidence 6777777777665444 66677777777788888888888887776642 22444555555444321111000
Q ss_pred HhHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 003829 586 YSERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREIL 665 (793)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 665 (793)
.. . ..........+..++|...+++..+.. +.+..++..+...|...|++++|+..|++++
T Consensus 301 -----------~~-~------~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL 361 (472)
T 4g1t_A 301 -----------LR-E------NGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEF 361 (472)
T ss_dssp -----------C-------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -----------HH-H------HHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHH
Confidence 00 0 000001111233677888888887764 4556678888999999999999999999999
Q ss_pred HCCCCCCH--HHHHHHHH-HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 003829 666 AKGIKPDI--ISYNTVIF-AYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPN 742 (793)
Q Consensus 666 ~~~~~~~~--~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 742 (793)
+....+.. ..+..+.. .+...|++++|+..|+++++ +.|+...... ..+.+.+++++.++.+ +.+
T Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~--i~~~~~~~~~---------~~~~l~~~~~~~l~~~-p~~ 429 (472)
T 4g1t_A 362 SKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK--INQKSREKEK---------MKDKLQKIAKMRLSKN-GAD 429 (472)
T ss_dssp HSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH--SCCCCHHHHH---------HHHHHHHHHHHHHHHC-C-C
T ss_pred hcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCcccHHHHH---------HHHHHHHHHHHHHHhC-CCC
Confidence 86433222 12333333 34567899999999999999 6665432222 2344556677777643 446
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCH
Q 003829 743 QNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTK 778 (793)
Q Consensus 743 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 778 (793)
..+|..++.+|...|++++|++.|+++++.+|.++.
T Consensus 430 ~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~ 465 (472)
T 4g1t_A 430 SEALHVLAFLQELNEKMQQADEDSERGLESGSLIPS 465 (472)
T ss_dssp TTHHHHHHHHHHHHHHCC------------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc
Confidence 889999999999999999999999999999887654
No 24
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.78 E-value=6.9e-18 Score=175.24 Aligned_cols=275 Identities=11% Similarity=-0.001 Sum_probs=192.3
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHH
Q 003829 490 DTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAY 569 (793)
Q Consensus 490 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 569 (793)
..+..+...+.+.|++++|.+.|+++.+.... +..++..+...+...|++++|...|+++.+.. +.+..++..+..+|
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 143 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQDPG-DAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSY 143 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 34555666666666666666666666665433 55666666666666666666666666666542 23455666666666
Q ss_pred HcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHH
Q 003829 570 ANGREIDQMLALSEEIYSERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTP--SLTTYNTLMYM 647 (793)
Q Consensus 570 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~ 647 (793)
...|++++|+..+++++....-..............+..+...+...|++++|..+++++.+.. +. +..++..++..
T Consensus 144 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~l~~~ 222 (365)
T 4eqf_A 144 TNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN-GDMIDPDLQTGLGVL 222 (365)
T ss_dssp HHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHS-CSSCCHHHHHHHHHH
T ss_pred HccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC-cCccCHHHHHHHHHH
Confidence 6667777776666665431000000000000113345566788999999999999999999874 33 68899999999
Q ss_pred HHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHH
Q 003829 648 YSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSLFVE 726 (793)
Q Consensus 648 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~ 726 (793)
|...|++++|+..++++.+.. +.+..+|..++.+|...|++++|...|+++++ ..| +..++..++.+|...|++++
T Consensus 223 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 223 FHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALE--IQPGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHCCCHHH
Confidence 999999999999999999863 44688999999999999999999999999999 445 47889999999999999999
Q ss_pred HHHHHHHHHHcCCC---C--------CHHHHHHHHHHHHccCCHHHHHHHHHHHh
Q 003829 727 ALDVVRYMIKQGCK---P--------NQNTYNSIVDGYCKLNQRYEAITFVNNLS 770 (793)
Q Consensus 727 A~~~~~~~~~~~~~---p--------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 770 (793)
|+..++++++..-. + +..+|..+..++...|+.+.|....++.+
T Consensus 300 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l 354 (365)
T 4eqf_A 300 AVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDL 354 (365)
T ss_dssp HHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhH
Confidence 99999999863200 0 25789999999999999999988877644
No 25
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.78 E-value=5.8e-17 Score=168.53 Aligned_cols=305 Identities=11% Similarity=-0.025 Sum_probs=156.8
Q ss_pred CCChHHHHH-HHHHHHhccCCCCCccchHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCH
Q 003829 146 HKKTDLALD-VFEWFRSCCSKDGNLVLRGSVIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRY 224 (793)
Q Consensus 146 ~~~~~~A~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 224 (793)
.|+++.|+. .|.........++ ..+...+..+...+...|++++|...|+.+++..+. +..++..++.++.+.|++
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~ 114 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENP--LRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQE 114 (368)
T ss_dssp --------CHHHHCCCCCCSSCT--TTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCc--ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCcCH
Confidence 456667776 6665543211111 113445666777777788888888888877776543 667777777777788888
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 003829 225 REAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEE 304 (793)
Q Consensus 225 ~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~ 304 (793)
++|+..|+++.+.. +.+..++..+...|...| ++++|...++++.+.... +...+..+...
T Consensus 115 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~---------------- 175 (368)
T 1fch_A 115 LLAISALRRCLELK-PDNQTALMALAVSFTNES-LQRQACEILRDWLRYTPA-YAHLVTPAEEG---------------- 175 (368)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTSTT-TGGGCC---------------------
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCcC-cHHHHHHHHHH----------------
Confidence 88888887777764 336677777777777777 777777777777765433 11111111000
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 003829 305 MKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLP-SIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPD 383 (793)
Q Consensus 305 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~ 383 (793)
... .. ....+..+.. +...|++++|...|+++.+..... +..++..++..|.+.|++++|++.++++.+.. +.+
T Consensus 176 -~~~-~~-~~~~~~~~~~-~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~ 250 (368)
T 1fch_A 176 -AGG-AG-LGPSKRILGS-LLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PND 250 (368)
T ss_dssp -------------CTTHH-HHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred -hhh-hc-ccHHHHHHHH-HhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCC
Confidence 000 00 0000001111 224455555555555554432111 24445555555555555555555555555442 223
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC----------CC
Q 003829 384 VFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCK----------PD 453 (793)
Q Consensus 384 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----------~~ 453 (793)
...+..+...+...|++++|...++++.+.. +.+..++..+..+|.+.|++++|.+.|+++...... ..
T Consensus 251 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 329 (368)
T 1fch_A 251 YLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMS 329 (368)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchh
Confidence 4455555555555555555555555554432 223445555555555555555555555554432110 01
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHH
Q 003829 454 IVTWNTLLAVFGQNGMDSEVSGVFK 478 (793)
Q Consensus 454 ~~~~~~l~~~~~~~~~~~~a~~~~~ 478 (793)
..+|..+..+|...|+.++|..+++
T Consensus 330 ~~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 330 ENIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp HHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred hHHHHHHHHHHHHhCChHhHHHhHH
Confidence 4555566666666666666655554
No 26
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.78 E-value=4.3e-17 Score=169.53 Aligned_cols=306 Identities=11% Similarity=0.028 Sum_probs=215.7
Q ss_pred HhcCCHHHHHH-HHHHHHhCCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCH
Q 003829 430 GNRGNFVEMMK-VFDEINKCNC---KPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSF 505 (793)
Q Consensus 430 ~~~g~~~~A~~-~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~ 505 (793)
...|++++|.+ .+++...... ..+...+..+...+...|++++|...|+++.+... .+..++..+...+...|++
T Consensus 36 ~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~ 114 (368)
T 1fch_A 36 PWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDP-KHMEAWQYLGTTQAENEQE 114 (368)
T ss_dssp ----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCcCH
Confidence 34467777777 6665443311 11345567777778888888888888888887643 3667788888888888888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHH
Q 003829 506 DQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEI 585 (793)
Q Consensus 506 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 585 (793)
++|.+.|+++.+.... +..++..+...+...|++++|...++++.... +.+...+..+... ....
T Consensus 115 ~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~-------~~~~------ 179 (368)
T 1fch_A 115 LLAISALRRCLELKPD-NQTALMALAVSFTNESLQRQACEILRDWLRYT-PAYAHLVTPAEEG-------AGGA------ 179 (368)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTGGGCC----------------------
T ss_pred HHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHH-------hhhh------
Confidence 8888888888876544 77788888888888899999999888888653 1122222111000 0000
Q ss_pred HhHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHccCCHHHHHHHHHH
Q 003829 586 YSERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTP--SLTTYNTLMYMYSRSENFARAEDVLRE 663 (793)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~ 663 (793)
.+ ...+..+...+ ..|++++|...++++.+.. +. +..++..++.+|...|++++|+..+++
T Consensus 180 --------------~~-~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 242 (368)
T 1fch_A 180 --------------GL-GPSKRILGSLL-SDSLFLEVKELFLAAVRLD-PTSIDPDVQCGLGVLFNLSGEYDKAVDCFTA 242 (368)
T ss_dssp ---------------------CTTHHHH-HHHHHHHHHHHHHHHHHHS-TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred --------------cc-cHHHHHHHHHh-hcccHHHHHHHHHHHHHhC-cCcccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 00 01111222233 7788999999999888764 33 578888999999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 003829 664 ILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPN 742 (793)
Q Consensus 664 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 742 (793)
+.+.. +.+..+|..++.++...|++++|...|+++++. .| +..++..++.+|...|++++|+..++++++.. +.+
T Consensus 243 al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~ 318 (368)
T 1fch_A 243 ALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALEL--QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQ-RKS 318 (368)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HTC
T ss_pred HHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCC
Confidence 98863 445788999999999999999999999999884 44 56888999999999999999999999988632 112
Q ss_pred -----------HHHHHHHHHHHHccCCHHHHHHHHHHHhhC
Q 003829 743 -----------QNTYNSIVDGYCKLNQRYEAITFVNNLSKL 772 (793)
Q Consensus 743 -----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 772 (793)
..+|..++.+|.+.|++++|..++++.++.
T Consensus 319 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 359 (368)
T 1fch_A 319 RGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLST 359 (368)
T ss_dssp ------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHH
T ss_pred CCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHH
Confidence 678999999999999999999988766543
No 27
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.76 E-value=3.3e-16 Score=157.76 Aligned_cols=239 Identities=13% Similarity=0.182 Sum_probs=81.0
Q ss_pred hcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHH
Q 003829 185 KEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIM 264 (793)
Q Consensus 185 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~~a~ 264 (793)
+.|++++|.++++++. +..+|..|+.++.+.|++++|++.|.+. +|..+|..++..+...| ++++|+
T Consensus 15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g-~~EeAi 81 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSG-NWEELV 81 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCC-CHHHHH
Confidence 5566777777777762 2347777777777777777777777543 35567777777777777 677777
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 003829 265 ALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKING 344 (793)
Q Consensus 265 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 344 (793)
.+++...+. .++..+...++.+|.+.|+++++.++++ .|+..+|+.++..|...|++++|...|..+
T Consensus 82 ~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---- 148 (449)
T 1b89_A 82 KYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---- 148 (449)
T ss_dssp -----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT----
T ss_pred HHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh----
Confidence 766655553 3345666777777777777777766663 245567777777777777777777777755
Q ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 003829 345 CLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNA 424 (793)
Q Consensus 345 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 424 (793)
..|..++.++.+.|++++|.+.++++ .+..+|..++.+|+..|+++.|......+ ..+..-...
T Consensus 149 -----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~~ 212 (449)
T 1b89_A 149 -----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEE 212 (449)
T ss_dssp -----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHHH
T ss_pred -----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHHH
Confidence 35777777777777777777777766 15667777777777777777774433321 223333445
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 003829 425 LIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQ 466 (793)
Q Consensus 425 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 466 (793)
++..|.+.|++++|..+++...... +-....|+.|.-.|++
T Consensus 213 lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~k 253 (449)
T 1b89_A 213 LINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSK 253 (449)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHh
Confidence 6667777777777777777665443 3334555555444443
No 28
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.75 E-value=1.7e-16 Score=164.76 Aligned_cols=267 Identities=15% Similarity=-0.015 Sum_probs=172.9
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003829 172 RGSVIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILN 251 (793)
Q Consensus 172 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~ 251 (793)
+...+..+...+.+.|++++|...|+.+++..+. +..++..++.+|...|++++|+..|+++.+.. +.+..+|..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPG-DAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 3445777788888888888888888888776544 67788888888888888888888888888764 336778888888
Q ss_pred HHHhcCCCHHHHHHHHHHHHhCCCCC---------CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC-CCHHHHHHHH
Q 003829 252 VYGKMGMPWNKIMALVEGMKSAGVKP---------DSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFS-PDKVTYNALL 321 (793)
Q Consensus 252 ~~~~~g~~~~~a~~~~~~~~~~~~~p---------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~-~~~~~~~~li 321 (793)
.|...| ++++|+..++++.+..... ....+..+...+...|++++|..+++++.+.... .+..++..+.
T Consensus 142 ~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 142 SYTNTS-HQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHHTT-CHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHHccc-cHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 888888 7888888888887643210 0112223355666777777777777777665311 1456667777
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Q 003829 322 DVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDE 401 (793)
Q Consensus 322 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 401 (793)
..|.+.|++++|++.|+++.+. .+.+..+|..++.+|...|++++|++.|+++.+.. +.+..++..+...|...|+++
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTV-RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYR 298 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHH
Confidence 7777777777777777776665 23355667777777777777777777777776652 334566666667777777777
Q ss_pred HHHHHHHHHHHCCCC-----------CCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003829 402 SAMKVFEEMRSAGCK-----------PNICTFNALIKMHGNRGNFVEMMKVFD 443 (793)
Q Consensus 402 ~a~~~~~~~~~~~~~-----------~~~~~~~~l~~~~~~~g~~~~A~~~~~ 443 (793)
+|...++++.+.... .+..+|..+..++...|+.+.+.++..
T Consensus 299 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 351 (365)
T 4eqf_A 299 EAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANL 351 (365)
T ss_dssp HHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHT
T ss_pred HHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 777777766543110 023455556666666666655555443
No 29
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.75 E-value=2.1e-16 Score=159.15 Aligned_cols=282 Identities=10% Similarity=0.071 Sum_probs=116.6
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHH
Q 003829 220 SNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAA 299 (793)
Q Consensus 220 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~ 299 (793)
+.|++++|.++++++. +..+|..|+.++.+.| ++++|++.|.+. +|..+|..++.++...|++++|.
T Consensus 15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g-~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi 81 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKG-MVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELV 81 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcC-CHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHH
Confidence 6788999999999983 2348999999999999 899999999653 47778999999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 003829 300 GVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIG 379 (793)
Q Consensus 300 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 379 (793)
.+++...+. .++..+.+.|+.+|.+.|+++++.++++ .|+..+|..++..|...|++++|...|..+
T Consensus 82 ~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---- 148 (449)
T 1b89_A 82 KYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---- 148 (449)
T ss_dssp -----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT----
T ss_pred HHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh----
Confidence 988777664 4567788899999999999999888884 357779999999999999999999999976
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 003829 380 ITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNT 459 (793)
Q Consensus 380 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 459 (793)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|+..|+++.|......+ ...+.-...
T Consensus 149 -----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~~ 212 (449)
T 1b89_A 149 -----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEE 212 (449)
T ss_dssp -----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHHH
T ss_pred -----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHHH
Confidence 24888999999999999999999888 27888999999999999999996554432 223344456
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC-CCCC------CHHHHHHHHH
Q 003829 460 LLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEA-GVTP------DLSTYNAVLA 532 (793)
Q Consensus 460 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~------~~~~~~~l~~ 532 (793)
++..|.+.|++++|..+++...... .-....|+-+...|++- +++...+.++....+ ++++ +...|..+..
T Consensus 213 lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ 290 (449)
T 1b89_A 213 LINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVF 290 (449)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 7777888888888888888777654 33556677776666654 233333333332221 1111 2334555555
Q ss_pred HHHhcCChHHHHH
Q 003829 533 ALARGGMWEQSEK 545 (793)
Q Consensus 533 ~~~~~g~~~~A~~ 545 (793)
.|...++++.|..
T Consensus 291 ly~~~~e~d~A~~ 303 (449)
T 1b89_A 291 LYDKYEEYDNAII 303 (449)
T ss_dssp HHHHTTCHHHHHH
T ss_pred HHHhhchHHHHHH
Confidence 6666666665555
No 30
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.74 E-value=3.7e-16 Score=159.34 Aligned_cols=284 Identities=13% Similarity=0.000 Sum_probs=213.4
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003829 453 DIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLA 532 (793)
Q Consensus 453 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 532 (793)
+...+..+...+...|++++|..+|+++.+.... +...+..+...+...|++++|.+.++++.+.... +...+..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC-CHHHHHHHHH
Confidence 3445666777788888888888888888776433 6677777788888888888888888888776443 6677777777
Q ss_pred HHHhcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCCCHHHHHHHHH-
Q 003829 533 ALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSERAFLELKKKGFSPDIPTLNAMIS- 611 (793)
Q Consensus 533 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~- 611 (793)
.+...|++++|...++++.+.. +.+...+..+...+ ++......+..
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~-------------------------------~~~~~~~~~~~~ 145 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQAD-------------------------------VDIDDLNVQSED 145 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTS-TTTTTC---------------------------------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHH-------------------------------HHHHHHHHHHHh
Confidence 8888888888888888877642 11222222221110 11111112212
Q ss_pred -HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 003829 612 -IYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMK 690 (793)
Q Consensus 612 -~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 690 (793)
.+...|++++|...++++.+.. +.+..++..++..+...|++++|...++++.+.. +.+...|..++.++...|+++
T Consensus 146 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 223 (327)
T 3cv0_A 146 FFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQ 223 (327)
T ss_dssp CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHH
Confidence 3667889999999999998875 5688899999999999999999999999999863 446788999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-----------CHHHHHHHHHHHHccCCH
Q 003829 691 EASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP-----------NQNTYNSIVDGYCKLNQR 759 (793)
Q Consensus 691 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-----------~~~~~~~l~~~~~~~g~~ 759 (793)
+|..+++++.+.... +..++..++.+|...|++++|++.++++++..... +...|..++.++.+.|++
T Consensus 224 ~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 302 (327)
T 3cv0_A 224 EALDAYNRALDINPG-YVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRP 302 (327)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCH
Confidence 999999999984322 56889999999999999999999999998742111 367889999999999999
Q ss_pred HHHHHHHHHHhhCC
Q 003829 760 YEAITFVNNLSKLD 773 (793)
Q Consensus 760 ~~A~~~~~~~~~~~ 773 (793)
++|..+++++++..
T Consensus 303 ~~A~~~~~~~l~~~ 316 (327)
T 3cv0_A 303 DLVELTYAQNVEPF 316 (327)
T ss_dssp HHHHHHTTCCSHHH
T ss_pred HHHHHHHHHHHHhc
Confidence 99999998877653
No 31
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.74 E-value=1.1e-15 Score=155.86 Aligned_cols=264 Identities=11% Similarity=-0.028 Sum_probs=165.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003829 174 SVIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVY 253 (793)
Q Consensus 174 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~ 253 (793)
..+......+...|++++|..+|+.+.+..+. +..++..++.++...|++++|...|+++.+.. +.+..++..+...+
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH 99 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHH
Confidence 34555666667777777777777777665443 66677777777777777777777777777664 33566777777777
Q ss_pred HhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHH--------------HH-HHHcCCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 003829 254 GKMGMPWNKIMALVEGMKSAGVKPDSYTFNTL--------------IS-CCRRGSLHEEAAGVFEEMKLAGFSPDKVTYN 318 (793)
Q Consensus 254 ~~~g~~~~~a~~~~~~~~~~~~~p~~~~~~~l--------------~~-~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~ 318 (793)
...| ++++|...++++.+.... +...+..+ .. .+...|++++|..+++++.+.. +.+...+.
T Consensus 100 ~~~~-~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 176 (327)
T 3cv0_A 100 TNEH-NANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHA 176 (327)
T ss_dssp HHTT-CHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHH
T ss_pred HHcC-CHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHH
Confidence 7777 777777777777665332 12222222 11 2555666777777777766653 23556666
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 003829 319 ALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAG 398 (793)
Q Consensus 319 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 398 (793)
.+...|.+.|++++|.+.++++.+. .+.+..++..++..+...|++++|.+.++++.+.. +.+...+..+...+...|
T Consensus 177 ~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g 254 (327)
T 3cv0_A 177 SLGVLYNLSNNYDSAAANLRRAVEL-RPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMS 254 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhc
Confidence 6777777777777777777776654 23345566667777777777777777777766653 334556666666666677
Q ss_pred CHHHHHHHHHHHHHCCCCC-----------CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003829 399 KDESAMKVFEEMRSAGCKP-----------NICTFNALIKMHGNRGNFVEMMKVFDE 444 (793)
Q Consensus 399 ~~~~a~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 444 (793)
++++|.+.++++.+..... +...+..+..++...|+.++|..++++
T Consensus 255 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 255 QYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp CHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 7777777766665542111 345566666666666666666666543
No 32
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.74 E-value=3.3e-15 Score=161.08 Aligned_cols=383 Identities=11% Similarity=-0.025 Sum_probs=196.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHc--------CCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC------
Q 003829 314 KVTYNALLDVYGKCRRPKEAMQVLREMKIN--------GCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIG------ 379 (793)
Q Consensus 314 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g------ 379 (793)
...|+.|...+...|++++|++.|++..+. .......+|+.+..+|...|++++|...+++..+..
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 344555555555566666665555554321 011123455566666666666666666655554320
Q ss_pred C-CCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH---HHhcCCHHHHHHHHHHHHhCCCCCC
Q 003829 380 I-TPDVFTYTTLLSGFEKA--GKDESAMKVFEEMRSAGCKPNICTFNALIKM---HGNRGNFVEMMKVFDEINKCNCKPD 453 (793)
Q Consensus 380 ~-~~~~~~~~~li~~~~~~--g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~g~~~~A~~~~~~~~~~~~~~~ 453 (793)
. .....++..+..++... +++++|+..|++..+.. +.+...+..+..+ +...++.++|++.+++..+.+ +.+
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~ 208 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDN 208 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSC
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Ccc
Confidence 0 11233444444444332 34666666666665542 1233333333333 233455556666666655442 223
Q ss_pred HHHHHHHHHHHH----hCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 003829 454 IVTWNTLLAVFG----QNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNA 529 (793)
Q Consensus 454 ~~~~~~l~~~~~----~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 529 (793)
...+..+...+. ..|++++|.+++++....... +...+..+...|...|++++|.+.++++.+..+. +..++..
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~ 286 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG-VTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLHCQ 286 (472)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHHHH
Confidence 444444443333 235566777777776665432 5666777777777777788887777777766444 5555655
Q ss_pred HHHHHHhcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCCCHHHHHHH
Q 003829 530 VLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSERAFLELKKKGFSPDIPTLNAM 609 (793)
Q Consensus 530 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 609 (793)
+...|...+... .... ...... .....+..+.|...++.+.. . .+.+..++..+
T Consensus 287 lg~~y~~~~~~~---------~~~~-~~~~~~------~~~~~~~~~~A~~~~~~a~~---------~-~~~~~~~~~~l 340 (472)
T 4g1t_A 287 IGCCYRAKVFQV---------MNLR-ENGMYG------KRKLLELIGHAVAHLKKADE---------A-NDNLFRVCSIL 340 (472)
T ss_dssp HHHHHHHHHHHH---------HHC-------C------HHHHHHHHHHHHHHHHHHHH---------H-CTTTCCCHHHH
T ss_pred HHHHHHHHHHHh---------hhHH-HHHHHH------HHHHHhhHHHHHHHHHHHhh---------c-CCchhhhhhhH
Confidence 555443211100 0000 000000 00111123455555544332 1 12334567778
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHH-HHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 003829 610 ISIYGRRQMVAKTNEILHFMNDSGFTPSLT--TYNTLMY-MYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRN 686 (793)
Q Consensus 610 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 686 (793)
...+...|++++|...|++..+....+... .+..+.. .+...|++++|+..|++.++. .|+.....
T Consensus 341 g~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~--------- 409 (472)
T 4g1t_A 341 ASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKE--------- 409 (472)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHH---------
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHH---------
Confidence 888888888888888888888764322211 1223332 235678999999999999885 45533222
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 003829 687 GRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQG 738 (793)
Q Consensus 687 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 738 (793)
+..+.+.+++++.++.+.. +..+|..++.+|...|++++|++.|+++++.|
T Consensus 410 ~~~~~l~~~~~~~l~~~p~-~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 410 KMKDKLQKIAKMRLSKNGA-DSEALHVLAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp HHHHHHHHHHHHHHHHCC--CTTHHHHHHHHHHHHHHCC-------------
T ss_pred HHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 2234455666776663222 55788999999999999999999999998754
No 33
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.74 E-value=6.4e-16 Score=153.28 Aligned_cols=258 Identities=15% Similarity=0.112 Sum_probs=141.0
Q ss_pred HhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHcCCCHHHH
Q 003829 499 YSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQM 578 (793)
Q Consensus 499 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 578 (793)
....|++..|+..++................+..+|...|++++|...++. ..+|+..++..+...+...++.++|
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~A 84 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDAI 84 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHHH
Confidence 334555555555555443321111122333444555666666665554432 1233444555555555666666666
Q ss_pred HHHHHHHHhHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHH
Q 003829 579 LALSEEIYSERAFLELKKKGF-SPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARA 657 (793)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 657 (793)
++.+++++ ..+. +.+...+..+...+...|++++|++.+++ +.+...+..++..+.+.|++++|
T Consensus 85 ~~~l~~ll---------~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A 149 (291)
T 3mkr_A 85 VAELDREM---------SRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLA 149 (291)
T ss_dssp HHHHHHHH---------HSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHH---------hcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHH
Confidence 65554332 2222 22344555555666666666666666655 34566666666666666667777
Q ss_pred HHHHHHHHHCCCCCCHHHH---HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 003829 658 EDVLREILAKGIKPDIISY---NTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYM 734 (793)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 734 (793)
.+.++++.+. .|+.... ..++..+...|++++|..+|+++.+... .+...++.++.++.+.|++++|...++++
T Consensus 150 ~~~l~~~~~~--~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~eA~~~l~~a 226 (291)
T 3mkr_A 150 RKELKKMQDQ--DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCS-PTLLLLNGQAACHMAQGRWEAAEGVLQEA 226 (291)
T ss_dssp HHHHHHHHHH--CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhh--CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6666666654 2332111 1122223334667777777777666321 24566666666777777777777777776
Q ss_pred HHcCCCCCHHHHHHHHHHHHccCCHHH-HHHHHHHHhhCCCCCCHH
Q 003829 735 IKQGCKPNQNTYNSIVDGYCKLNQRYE-AITFVNNLSKLDPHVTKE 779 (793)
Q Consensus 735 ~~~~~~p~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~~~~~ 779 (793)
++.. +.+..++..++..+...|+.++ +.++++++++.+|+++.+
T Consensus 227 l~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~ 271 (291)
T 3mkr_A 227 LDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFI 271 (291)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHH
Confidence 6532 2246666666666666666654 456666777776665543
No 34
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.72 E-value=3e-15 Score=148.40 Aligned_cols=193 Identities=16% Similarity=0.146 Sum_probs=83.6
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 003829 281 TFNTLISCCRRGSLHEEAAGVFEEMKLAGFSP-DKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAY 359 (793)
Q Consensus 281 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 359 (793)
++..+...+...++.++|.+.++++...+..| +...+..+..++.+.|++++|++.+++ +.+...+..++..|
T Consensus 67 a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~ 140 (291)
T 3mkr_A 67 AVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQIL 140 (291)
T ss_dssp HHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHH
Confidence 33333334444444444444444444333222 223333334444444444444444443 22334444444444
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHH---HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 003829 360 ARDGLLEEAMELKTQMVEIGITPDVFTY---TTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFV 436 (793)
Q Consensus 360 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~---~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 436 (793)
.+.|++++|.+.|+++.+.. |+.... ..++..+...|++++|..+|+++.+. .+.+...++.+..++.+.|+++
T Consensus 141 ~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~ 217 (291)
T 3mkr_A 141 LKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWE 217 (291)
T ss_dssp HHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHH
T ss_pred HHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHH
Confidence 44455555544444444432 221100 01112222234555555555555444 2334445555555555555555
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHH-HHHHHHHHHHc
Q 003829 437 EMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSE-VSGVFKEMKRA 483 (793)
Q Consensus 437 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~m~~~ 483 (793)
+|.+.|+++.... +.+..++..++..+...|+.++ +.++++++.+.
T Consensus 218 eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 218 AAEGVLQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 5555555544432 2234445555555555555543 34455555544
No 35
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.70 E-value=2.6e-17 Score=178.76 Aligned_cols=116 Identities=16% Similarity=0.110 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHh---CCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 003829 243 LITYNVILNVYGKMGMPWNKIMALVEGMKS---AGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNA 319 (793)
Q Consensus 243 ~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~---~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~ 319 (793)
..|||++|++||+.| +.++|.++|++|.+ .|+.||..|||+||.+||+.|++++|.++|++|.+.|+.||++|||+
T Consensus 127 ~~TynaLIdglcK~G-~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTD-QLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHT-CHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 345555555555555 55555555555432 34555555555555555555555555555555555555555555555
Q ss_pred HHHHHHhcCCh-HHHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 003829 320 LLDVYGKCRRP-KEAMQVLREMKINGCLPSIVTYNSLISAY 359 (793)
Q Consensus 320 li~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 359 (793)
||.++|+.|+. ++|.++|++|.+.|+.||..+|+.++.+.
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~ 246 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEE 246 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChh
Confidence 55555555543 45555555555555555555555555433
No 36
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.69 E-value=9e-17 Score=174.57 Aligned_cols=187 Identities=17% Similarity=0.204 Sum_probs=149.2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh---CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 003829 601 PDIPTLNAMISIYGRRQMVAKTNEILHFMND---SGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYN 677 (793)
Q Consensus 601 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 677 (793)
.-..+|+++|++|++.|++++|.++|++|.+ .|+.||+.+||+||++|++.|++++|.++|++|.+.|+.||.+||+
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn 204 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 3456899999999999999999999988764 4789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC------HHHHHHHH
Q 003829 678 TVIFAYCRNGRM-KEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPN------QNTYNSIV 750 (793)
Q Consensus 678 ~l~~~~~~~g~~-~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~------~~~~~~l~ 750 (793)
++|.++++.|+. ++|.++|++|.+.|+.||..+|+.++..+.+. ..++.++++ .-++.|+ ..+...|.
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~ 279 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLR 279 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHH
Confidence 999999999984 78999999999999999999999988665544 455555555 3345554 34455666
Q ss_pred HHHHccC---------CHHHHHHHHHHHhhC---------------CCCCCHHHHHHHHHHHhhhc
Q 003829 751 DGYCKLN---------QRYEAITFVNNLSKL---------------DPHVTKELECKLSDRIAKKW 792 (793)
Q Consensus 751 ~~~~~~g---------~~~~A~~~~~~~~~~---------------~~~~~~~~~~~l~~~l~k~~ 792 (793)
+.|.+.+ ..++-...+++=+.+ .+......++..+..+.++|
T Consensus 280 dl~s~d~~~s~pk~~~~~~~L~~~~~~Ql~~E~~~~v~v~sve~~~~~t~~~~~~r~~l~~~~~~w 345 (1134)
T 3spa_A 280 DVYAKDGRVSYPKLHLPLKTLQCLFEKQLHMELASRVCVVSVEKPTLPSKEVKHARKTLKTLRDQW 345 (1134)
T ss_dssp HHHCCCSCCCCCCCSSCHHHHHHHHHHHHHHHHHCEEEEECCSCCCCCCTTHHHHHHHHHHHHHHH
T ss_pred HHHccCCCCcCccccCCHHHHHHHHHHHHHHHHcCeeEEeecccCCCCCHHHHHHHHHHHHHHHHH
Confidence 7777655 234545555443321 13344566888888888888
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.65 E-value=4.5e-14 Score=138.23 Aligned_cols=228 Identities=11% Similarity=0.040 Sum_probs=180.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCCC--
Q 003829 525 STYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSERAFLELKKKGFSPD-- 602 (793)
Q Consensus 525 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-- 602 (793)
..+..+...+...|++++|...|+++.+.. .+...+..+..++...|++++|+..+++++... .. ..++
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-----~~--~~~~~~ 76 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQG-----RE--MRADYK 76 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----HH--TTCCHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-----cc--cccchH
Confidence 445556666667777777777777766554 556666667777777777777777776654311 11 1122
Q ss_pred --HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003829 603 --IPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVI 680 (793)
Q Consensus 603 --~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 680 (793)
..++..+...+...|++++|...|+++.+.. |+. ..+...|++++|...++++.... +.+...+..++
T Consensus 77 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~ 146 (258)
T 3uq3_A 77 VISKSFARIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEG 146 (258)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHH
Confidence 4678889999999999999999999999863 553 34666788999999999999862 33467889999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHH
Q 003829 681 FAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRY 760 (793)
Q Consensus 681 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 760 (793)
..+...|++++|...++++++.... +..++..++.+|...|++++|+..++++++.. +.+...|..++.++.+.|+++
T Consensus 147 ~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~ 224 (258)
T 3uq3_A 147 KEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYA 224 (258)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhcCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHH
Confidence 9999999999999999999984332 57889999999999999999999999999853 335888999999999999999
Q ss_pred HHHHHHHHHhhCC
Q 003829 761 EAITFVNNLSKLD 773 (793)
Q Consensus 761 ~A~~~~~~~~~~~ 773 (793)
+|...++++++.+
T Consensus 225 ~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 225 SALETLDAARTKD 237 (258)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC
Confidence 9999999999998
No 38
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.65 E-value=1.3e-14 Score=154.03 Aligned_cols=378 Identities=12% Similarity=0.026 Sum_probs=185.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCH---HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 003829 320 LLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLL---EEAMELKTQMVEIGITPDVFTYTTLLSGFEK 396 (793)
Q Consensus 320 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 396 (793)
+...+.+.|++++|+++|++..+.| +..++..+...|...|+. ++|++.|++..+. +...+..+...+..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHh
Confidence 4445555666666666666655543 223344444445555555 5555555555533 22333334333333
Q ss_pred cC-----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChH
Q 003829 397 AG-----KDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDS 471 (793)
Q Consensus 397 ~g-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 471 (793)
.| +.++|...|++..+.|... .+..|...|...+..+++ .
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~--------------------------------~ 126 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANGEGN---TLIPLAMLYLQYPHSFPN--------------------------------V 126 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTTCSS---CHHHHHHHHHHCGGGCTT--------------------------------C
T ss_pred CCCCCCcCHHHHHHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCCC--------------------------------H
Confidence 32 4455555555555543221 333444444433322111 1
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHH----HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---ChHHHH
Q 003829 472 EVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFD----QAMSIYKRMLEAGVTPDLSTYNAVLAALARGG---MWEQSE 544 (793)
Q Consensus 472 ~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~----~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~ 544 (793)
++.+.+......| +......+...|...+.++ .+..+++..... +...+..+...|...| +.++|+
T Consensus 127 ~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~----~~~a~~~Lg~~~~~~g~~~~~~~A~ 199 (452)
T 3e4b_A 127 NAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNT----TDICYVELATVYQKKQQPEQQAELL 199 (452)
T ss_dssp CHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTT----CTTHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcC----CHHHHHHHHHHHHHcCCcccHHHHH
Confidence 2333333333333 2234444444555444332 222333332222 2225555555666666 666666
Q ss_pred HHHHHHhcCCCCCCHhhHHHHHHHHHcC----CCHHHHHHHHHHHHhHHHHHHHHHCCCCCCHHHHHHHHHH-H--HhcC
Q 003829 545 KIFAEMKGGRCKPNELTYSSLLHAYANG----REIDQMLALSEEIYSERAFLELKKKGFSPDIPTLNAMISI-Y--GRRQ 617 (793)
Q Consensus 545 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~g 617 (793)
..|++..+.+ .++...+..+...|... +++++|+.+|++. . +-+...+..+... + ...+
T Consensus 200 ~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~a---------a----~g~~~a~~~Lg~~~~~~~~~~ 265 (452)
T 3e4b_A 200 KQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKI---------A----PGYPASWVSLAQLLYDFPELG 265 (452)
T ss_dssp HHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHH---------G----GGSTHHHHHHHHHHHHSGGGC
T ss_pred HHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHH---------c----CCCHHHHHHHHHHHHhCCCCC
Confidence 6666666554 33444334455555433 5666666665532 1 2344455555554 3 3467
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC-----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCC
Q 003829 618 MVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSE-----NFARAEDVLREILAKGIKPDIISYNTVIFAYCR----NGR 688 (793)
Q Consensus 618 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~ 688 (793)
++++|.+.|++..+.| +...+..|...|. .| ++++|...|++.. .| +...+..|...|.. ..+
T Consensus 266 d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d 337 (452)
T 3e4b_A 266 DVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVY 337 (452)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCC
T ss_pred CHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcC
Confidence 7777777777777765 5666666766666 44 7888888887776 32 55666666666655 337
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 003829 689 MKEASRIFSEMRDSGLVPDVITYNTFVASYAA----DSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAIT 764 (793)
Q Consensus 689 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 764 (793)
+++|.++|++..+.|. ......|+.+|.. ..+.++|..++++..+.|. ++.......+......++.++|..
T Consensus 338 ~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~-~~a~~~l~~l~~~~~~~~~~~a~~ 413 (452)
T 3e4b_A 338 PQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT-PEANDLATQLEAPLTPAQRAEGQR 413 (452)
T ss_dssp HHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC-HHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhCCHHHHHHHHH
Confidence 8888888888877553 3345566666653 4567888888888877652 222222222222233446667777
Q ss_pred HHHHHhhC
Q 003829 765 FVNNLSKL 772 (793)
Q Consensus 765 ~~~~~~~~ 772 (793)
+.++..+.
T Consensus 414 ~~~~~~~~ 421 (452)
T 3e4b_A 414 LVQQELAA 421 (452)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 77665554
No 39
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.64 E-value=3.7e-14 Score=150.47 Aligned_cols=374 Identities=12% Similarity=0.077 Sum_probs=197.5
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh---HHHHHHHHHHHHcCCCCChhHHHHHHHHHHh
Q 003829 285 LISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRP---KEAMQVLREMKINGCLPSIVTYNSLISAYAR 361 (793)
Q Consensus 285 l~~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 361 (793)
+...+.+.|++++|.++|++..+.| +...+..|...|...|+. ++|+..|++..+. +...+..+...+..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHh
Confidence 5566778899999999999998876 344566677778888888 9999999998753 56677777775666
Q ss_pred cC-----CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 003829 362 DG-----LLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDE---SAMKVFEEMRSAGCKPNICTFNALIKMHGNRG 433 (793)
Q Consensus 362 ~g-----~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 433 (793)
.| +.++|++.|++..+.|.. + .+..|...|...+..+ ++.+.+......| +...+..+...|...+
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g~~-~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~ 155 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANGEG-N--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQG 155 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTTCS-S--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHT
T ss_pred CCCCCCcCHHHHHHHHHHHHHCCCH-H--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCC
Confidence 55 789999999999998743 2 5666777777665443 3445555554444 3445566667777666
Q ss_pred CHHHHH----HHHHHHHhCCCCCCHHHHHHHHHHHHhCC---ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc----
Q 003829 434 NFVEMM----KVFDEINKCNCKPDIVTWNTLLAVFGQNG---MDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRC---- 502 (793)
Q Consensus 434 ~~~~A~----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~---- 502 (793)
.++++. .+++.... .+...+..|...|...| +.++|+..|++..+.|.. +...+..+...|...
T Consensus 156 ~~~~~~~~a~~~~~~a~~----~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~ 230 (452)
T 3e4b_A 156 TYDQHLDDVERICKAALN----TTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGT 230 (452)
T ss_dssp CGGGGHHHHHHHHHHHTT----TCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSS
T ss_pred CcccCHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCC
Confidence 443333 33333222 12235555555555555 555555555555555432 333333444444333
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHH--HcCCCHHHHHH
Q 003829 503 GSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAY--ANGREIDQMLA 580 (793)
Q Consensus 503 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~--~~~~~~~~a~~ 580 (793)
+++++|.++|++.. .| +...+..+...| + ...+++++|+.
T Consensus 231 ~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~----------------------------------~~~~~~~d~~~A~~ 272 (452)
T 3e4b_A 231 PDEKTAQALLEKIA-PG---YPASWVSLAQLL----------------------------------YDFPELGDVEQMMK 272 (452)
T ss_dssp CCHHHHHHHHHHHG-GG---STHHHHHHHHHH----------------------------------HHSGGGCCHHHHHH
T ss_pred CCHHHHHHHHHHHc-CC---CHHHHHHHHHHH----------------------------------HhCCCCCCHHHHHH
Confidence 34555555555444 21 223333333331 2 23445555555
Q ss_pred HHHHHHhHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----c
Q 003829 581 LSEEIYSERAFLELKKKGFSPDIPTLNAMISIYGRRQ-----MVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSR----S 651 (793)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 651 (793)
+|++.. +.| +...+..|...|. .| ++++|.+.|++.. . .+...+..|...|.. .
T Consensus 273 ~~~~Aa---------~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~ 335 (452)
T 3e4b_A 273 YLDNGR---------AAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G---REVAADYYLGQIYRRGYLGK 335 (452)
T ss_dssp HHHHHH---------HTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSS
T ss_pred HHHHHH---------HCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCC
Confidence 544332 111 3444445555444 33 6777777777666 3 356666666666655 3
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 003829 652 ENFARAEDVLREILAKGIKPDIISYNTVIFAYCR----NGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEA 727 (793)
Q Consensus 652 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 727 (793)
.++++|...|++..+.| +......|...|.. ..+.++|..+|+...+.|.. +.......+......++..+|
T Consensus 336 ~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~-~a~~~l~~l~~~~~~~~~~~a 411 (452)
T 3e4b_A 336 VYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTP-EANDLATQLEAPLTPAQRAEG 411 (452)
T ss_dssp CCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCH-HHHHHHHHHHTTCCHHHHHHH
T ss_pred cCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCH-HHHHHHHHHHHhCCHHHHHHH
Confidence 47888888888887765 33455566666653 35788888888888876542 222222222222223345666
Q ss_pred HHHHHHHH
Q 003829 728 LDVVRYMI 735 (793)
Q Consensus 728 ~~~~~~~~ 735 (793)
..+.++..
T Consensus 412 ~~~~~~~~ 419 (452)
T 3e4b_A 412 QRLVQQEL 419 (452)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666554
No 40
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.63 E-value=3.6e-13 Score=132.99 Aligned_cols=229 Identities=14% Similarity=0.029 Sum_probs=174.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHc----CCCHHHHHHHHHHHHhHHHHHHHHHCC
Q 003829 523 DLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYAN----GREIDQMLALSEEIYSERAFLELKKKG 598 (793)
Q Consensus 523 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 598 (793)
+...+..+...+...|++++|...|++..+. .+...+..+...|.. .+++++|+..+++... .+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~---------~~ 72 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACD---------LN 72 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH---------TT
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHH---------CC
Confidence 4445555666666666666676666666652 244555566666666 6777777776665432 12
Q ss_pred CCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHCCCC
Q 003829 599 FSPDIPTLNAMISIYGR----RQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSR----SENFARAEDVLREILAKGIK 670 (793)
Q Consensus 599 ~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~ 670 (793)
+...+..+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|+..|++..+.+
T Consensus 73 ---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~-- 144 (273)
T 1ouv_A 73 ---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN-- 144 (273)
T ss_dssp ---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--
T ss_pred ---CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--
Confidence 56677777777777 888888888888888764 77788888888888 889999999999998864
Q ss_pred CCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCC
Q 003829 671 PDIISYNTVIFAYCR----NGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAA----DSLFVEALDVVRYMIKQGCKPN 742 (793)
Q Consensus 671 ~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~ 742 (793)
+...+..+...|.. .+++++|.++|++..+.+ +...+..++.+|.. .+++++|++.++++.+.+ +
T Consensus 145 -~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~ 217 (273)
T 1ouv_A 145 -DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---N 217 (273)
T ss_dssp -CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---C
T ss_pred -cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---C
Confidence 56677888888888 889999999999998853 46778888889988 899999999999998754 3
Q ss_pred HHHHHHHHHHHHc----cCCHHHHHHHHHHHhhCCCCCCH
Q 003829 743 QNTYNSIVDGYCK----LNQRYEAITFVNNLSKLDPHVTK 778 (793)
Q Consensus 743 ~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~ 778 (793)
...+..++..|.+ .|++++|.++++++.+.+|++..
T Consensus 218 ~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~ 257 (273)
T 1ouv_A 218 GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGAC 257 (273)
T ss_dssp HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHHH
Confidence 6778888888888 89999999999999999876433
No 41
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.63 E-value=4.5e-14 Score=139.54 Aligned_cols=241 Identities=16% Similarity=0.108 Sum_probs=175.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCCCHHHH
Q 003829 527 YNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSERAFLELKKKGFSPDIPTL 606 (793)
Q Consensus 527 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 606 (793)
+......+...|++++|...|+++.+.. +.+...+..+..++...|++++|+..+++++. ...........|
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-------~~~~~~~~~~~~ 77 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-------KVNATKAKSADF 77 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-------TSCTTTCCHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-------ccCchhHHHHHH
Confidence 3445556666777777777777766542 22444666666677777777777777665432 001111123457
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 003829 607 NAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRN 686 (793)
Q Consensus 607 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 686 (793)
..++..+...|++++|...|++..+.. +.+..++..+...|...|++++|+..++++.+.. +.+...|..++..+...
T Consensus 78 ~~lg~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~ 155 (272)
T 3u4t_A 78 EYYGKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYN 155 (272)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHH
Confidence 777888888888888888888888764 5567788889999999999999999999988762 34567777777445556
Q ss_pred CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCC---hHHHHHHHHHHHHcC-CCCC------HHHHHHHHHHHHc
Q 003829 687 GRMKEASRIFSEMRDSGLVPD-VITYNTFVASYAADSL---FVEALDVVRYMIKQG-CKPN------QNTYNSIVDGYCK 755 (793)
Q Consensus 687 g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~-~~p~------~~~~~~l~~~~~~ 755 (793)
+++++|.+.|+++++ ..|+ ...+..++.++...|+ +++|+..++++++.. -.|+ ...|..++..|.+
T Consensus 156 ~~~~~A~~~~~~a~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 233 (272)
T 3u4t_A 156 KEYVKADSSFVKVLE--LKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTI 233 (272)
T ss_dssp TCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--hCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHH
Confidence 699999999999998 4444 6778888888888888 888999999987631 1133 2577889999999
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHH
Q 003829 756 LNQRYEAITFVNNLSKLDPHVTKE 779 (793)
Q Consensus 756 ~g~~~~A~~~~~~~~~~~~~~~~~ 779 (793)
.|++++|..+++++++.+|+++..
T Consensus 234 ~~~~~~A~~~~~~al~~~p~~~~a 257 (272)
T 3u4t_A 234 NRDKVKADAAWKNILALDPTNKKA 257 (272)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred cCCHHHHHHHHHHHHhcCccHHHH
Confidence 999999999999999999986553
No 42
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.62 E-value=3.4e-14 Score=134.43 Aligned_cols=198 Identities=14% Similarity=-0.008 Sum_probs=138.0
Q ss_pred CCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 003829 557 PNELTYSSLLHAYANGREIDQMLALSEEIYSERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTP 636 (793)
Q Consensus 557 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 636 (793)
++...+..+...+...|++++|+..+++++. --+.+...+..+...+.+.|++++|...+++..+.. |.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~----------~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~ 71 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALK----------ENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PR 71 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHT----------TSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC
Confidence 3444555555666666666666666655432 113345666666677777777777777777777654 55
Q ss_pred CHHHHHHHHHHHHcc-----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 003829 637 SLTTYNTLMYMYSRS-----------ENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLV 705 (793)
Q Consensus 637 ~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 705 (793)
+...+..+..++... |++++|+..+++.++.. +.+...|..+..+|...|++++|...|+++++..
T Consensus 72 ~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-- 148 (217)
T 2pl2_A 72 YLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE-- 148 (217)
T ss_dssp CHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred cHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--
Confidence 666777777777777 99999999999999863 3357788889999999999999999999999866
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHh
Q 003829 706 PDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLNQRYEAITFVNNLS 770 (793)
Q Consensus 706 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 770 (793)
.+...+..++.+|...|++++|+..++++++. .| +...+..++.++.+.|++++|+..+++.-
T Consensus 149 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 149 DTPEIRSALAELYLSMGRLDEALAQYAKALEQ--APKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTC---------------
T ss_pred cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 57788899999999999999999999999885 44 57888899999999999999999888764
No 43
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.61 E-value=7.7e-14 Score=131.97 Aligned_cols=208 Identities=19% Similarity=0.061 Sum_probs=109.5
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003829 172 RGSVIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILN 251 (793)
Q Consensus 172 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~ 251 (793)
+..++..+...+...|++++|...|+.+++..+. +...+..+..++.+.|++++|+..|++..+..+ .+...+..+..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~ 81 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVARTP-RYLGGYMVLSE 81 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHH
Confidence 3456666677777777777777777777766544 667777777777777777777777777776642 25566666666
Q ss_pred HHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 003829 252 VYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPK 331 (793)
Q Consensus 252 ~~~~~g~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 331 (793)
.+.+.+ . . ..+ .+...|++++|...+++..+.. +-+...+..+..+|...|+++
T Consensus 82 ~~~~~~-~------------~---~~~---------~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~ 135 (217)
T 2pl2_A 82 AYVALY-R------------Q---AED---------RERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERD 135 (217)
T ss_dssp HHHHHH-H------------T---CSS---------HHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhh-h------------h---hhh---------hcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChH
Confidence 666650 0 0 000 0011145555555555555442 123444555555555555555
Q ss_pred HHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003829 332 EAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEM 410 (793)
Q Consensus 332 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 410 (793)
+|+..|++..+.. .+...+..+..+|...|++++|+..|++..+.. +.+...+..+...+...|++++|+..+++.
T Consensus 136 ~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 136 KAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 5555555555543 344555555555555555555555555555542 234445555555555555555555555543
No 44
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.61 E-value=2.2e-13 Score=133.30 Aligned_cols=225 Identities=14% Similarity=0.058 Sum_probs=122.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CC----HHHH
Q 003829 173 GSVIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCK--PT----LITY 246 (793)
Q Consensus 173 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--p~----~~~~ 246 (793)
..++..+...+...|++++|...|+.+.+.. .+..++..++.++...|++++|+..|+++.+.... ++ ..+|
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 3456666666777777777777777766655 35666777777777777777777777776654211 11 3556
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 003829 247 NVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGK 326 (793)
Q Consensus 247 ~~ll~~~~~~g~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 326 (793)
..+...+...| ++++|...++++.+.. |+. ..+...|++++|...++++.... +.+...+..+...+..
T Consensus 83 ~~l~~~~~~~~-~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 151 (258)
T 3uq3_A 83 ARIGNAYHKLG-DLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFT 151 (258)
T ss_dssp HHHHHHHHHTT-CHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcc-cHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHH
Confidence 66666666666 6666666666665532 221 22333455555555555555442 1133344555555555
Q ss_pred cCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 003829 327 CRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKV 406 (793)
Q Consensus 327 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 406 (793)
.|++++|...|++..+.. +.+..+|..+...+...|++++|++.+++..+.. +.+...+..+...+...|++++|...
T Consensus 152 ~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 229 (258)
T 3uq3_A 152 KSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALET 229 (258)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 555555555555554431 2234455555555555555555555555555442 22344444445555555555555555
Q ss_pred HHHHHH
Q 003829 407 FEEMRS 412 (793)
Q Consensus 407 ~~~~~~ 412 (793)
+++..+
T Consensus 230 ~~~a~~ 235 (258)
T 3uq3_A 230 LDAART 235 (258)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 544443
No 45
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.60 E-value=1.9e-13 Score=140.04 Aligned_cols=246 Identities=12% Similarity=0.100 Sum_probs=180.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHcCCC-HHHHHHHHHHHHhHHHHHHHHHCCCCCCH
Q 003829 525 STYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGRE-IDQMLALSEEIYSERAFLELKKKGFSPDI 603 (793)
Q Consensus 525 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 603 (793)
..|..+...+.+.|++++|+..+++++... +-+..+|..+..++...|+ +++|+..+++++.. -+.+.
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l----------~P~~~ 166 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE----------QPKNY 166 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH----------CTTCH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH----------CCCCH
Confidence 455556666777777777777777776542 2355666777777777775 77777777765431 13356
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003829 604 PTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAY 683 (793)
Q Consensus 604 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 683 (793)
..|..+..++...|++++|+..|+++++.+ +.+...|..+..++...|++++|+..++++++.. +-+...|+.+..++
T Consensus 167 ~a~~~~g~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l 244 (382)
T 2h6f_A 167 QVWHHRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVI 244 (382)
T ss_dssp HHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 778888888888888888888888888875 6678888888888888899999999999988863 33577888888888
Q ss_pred HH-cCCHHHH-----HHHHHHHHHCCCCC-CHHHHHHHHHHHHhcC--ChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHH
Q 003829 684 CR-NGRMKEA-----SRIFSEMRDSGLVP-DVITYNTFVASYAADS--LFVEALDVVRYMIKQGCKP-NQNTYNSIVDGY 753 (793)
Q Consensus 684 ~~-~g~~~~A-----~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~ 753 (793)
.. .|..++| +..|+++++ +.| +...|..++.++...| ++++|++.++++ + ..| +...+..++++|
T Consensus 245 ~~l~~~~~eA~~~~el~~~~~Al~--l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~--~~p~~~~al~~La~~~ 319 (382)
T 2h6f_A 245 SNTTGYNDRAVLEREVQYTLEMIK--LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-Q--PSHSSPYLIAFLVDIY 319 (382)
T ss_dssp HHTTCSCSHHHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-T--TTCCCHHHHHHHHHHH
T ss_pred HHhcCcchHHHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-c--cCCCCHHHHHHHHHHH
Confidence 88 5665777 488888888 455 4578888888888877 588888888887 3 344 477788888888
Q ss_pred HccC--------C-HHHHHHHHHHH-hhCCCCCCHHHHHHHHHHHh
Q 003829 754 CKLN--------Q-RYEAITFVNNL-SKLDPHVTKELECKLSDRIA 789 (793)
Q Consensus 754 ~~~g--------~-~~~A~~~~~~~-~~~~~~~~~~~~~~l~~~l~ 789 (793)
.+.| + +++|+++++++ .+.+|.. ...|..+...+.
T Consensus 320 ~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r-~~~w~~~~~~l~ 364 (382)
T 2h6f_A 320 EDMLENQCDNKEDILNKALELCEILAKEKDTIR-KEYWRYIGRSLQ 364 (382)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGG-HHHHHHHHHHHH
T ss_pred HHHhcccccchHHHHHHHHHHHHHHHHHhCchh-HHHHHHHHHHHH
Confidence 8874 2 58899999998 8888863 344555554443
No 46
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.59 E-value=5.5e-11 Score=129.98 Aligned_cols=480 Identities=10% Similarity=0.013 Sum_probs=254.5
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC---HHHHHHH
Q 003829 225 REAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSL---HEEAAGV 301 (793)
Q Consensus 225 ~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~---~~~A~~~ 301 (793)
.+-+..|++.+..+ +-|..+|..++..+.+.+ ..+.+..+|+.+...- ......|...+..-.+.++ ++.+..+
T Consensus 49 ~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~-~~~~aR~vyEraL~~f-P~~~~lW~~Yi~~E~~~~~~~~~~~v~~l 125 (679)
T 4e6h_A 49 SDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLK-QWKQVYETFDKLHDRF-PLMANIWCMRLSLEFDKMEELDAAVIEPV 125 (679)
T ss_dssp SCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC--CCCHHHHHHH
T ss_pred HHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhhCCcchHHHHHHH
Confidence 34455556665554 347777777777777776 6777777777777653 2255566666666666666 7777777
Q ss_pred HHHHHHCC-CCCCHHHHHHHHHHHHhcCCh--------HHHHHHHHHHHHc-CC-CCC-hhHHHHHHHHHH---------
Q 003829 302 FEEMKLAG-FSPDKVTYNALLDVYGKCRRP--------KEAMQVLREMKIN-GC-LPS-IVTYNSLISAYA--------- 360 (793)
Q Consensus 302 ~~~~~~~g-~~~~~~~~~~li~~~~~~g~~--------~~A~~~~~~~~~~-~~-~~~-~~~~~~li~~~~--------- 360 (793)
|++.+... .+|++..|..-+....+.++. +.+.++|+..+.. |. .++ ...|...+....
T Consensus 126 feRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~e 205 (679)
T 4e6h_A 126 LARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFE 205 (679)
T ss_dssp HHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHH
Confidence 77777652 125666666665554444443 2233555554432 43 333 345555554432
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003829 361 RDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMK 440 (793)
Q Consensus 361 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 440 (793)
..++++.+..+|++++......-..+|......-...+. ..+..++.+. ..+++.|..
T Consensus 206 eq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e~---------------------~~~y~~Ar~ 263 (679)
T 4e6h_A 206 EQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQ-LTARRHIGEL---------------------SAQYMNARS 263 (679)
T ss_dssp HHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCT-TTHHHHHHHH---------------------HHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCc-chHHHHHHHh---------------------hHHHHHHHH
Confidence 123345555566555532111111111111110000000 0011111110 112233333
Q ss_pred HHHHHHhC--CCC---CCH-HHHHHHHHHHHhCC-ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC-------CHH
Q 003829 441 VFDEINKC--NCK---PDI-VTWNTLLAVFGQNG-MDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCG-------SFD 506 (793)
Q Consensus 441 ~~~~~~~~--~~~---~~~-~~~~~l~~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g-------~~~ 506 (793)
.+.++... ++. |.. .+.. ....-..+ .......+ |...+..--..+ ..+
T Consensus 264 ~~~e~~~~~~~l~r~~p~~~~~~~--~~~~p~~~~~~~~ql~l---------------W~~yi~fEk~~~~~l~~~~~~~ 326 (679)
T 4e6h_A 264 LYQDWLNITKGLKRNLPITLNQAT--ESNLPKPNEYDVQQLLI---------------WLEWIRWESDNKLELSDDLHKA 326 (679)
T ss_dssp HHHHHHHHTTTCCCCCCSSSTTCC--TTTSCCTTCCCHHHHHH---------------HHHHHHHHHTCTTCCCHHHHHH
T ss_pred HHHHHHHHHHhHhhccccccccch--hccCCCCchhHHHHHHH---------------HHHHHHHHHhCCccccchhhHH
Confidence 33332110 100 000 0000 00000000 00011111 112221111111 123
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH-HHHHHHhcCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHH
Q 003829 507 QAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSE-KIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEI 585 (793)
Q Consensus 507 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 585 (793)
.+..+|++++..-.. ....|...+..+...|+.++|. .+++..... ++.+...|...+......|++++|..+|+.+
T Consensus 327 Rv~~~Ye~aL~~~p~-~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~ 404 (679)
T 4e6h_A 327 RMTYVYMQAAQHVCF-APEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSC 404 (679)
T ss_dssp HHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 445666666665333 6777777777777777777775 888777653 2334555666666677778888888888776
Q ss_pred HhHH--HHHHHHHCCCCC-----------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHcc
Q 003829 586 YSER--AFLELKKKGFSP-----------DIPTLNAMISIYGRRQMVAKTNEILHFMNDS-GFTPSLTTYNTLMYMYSRS 651 (793)
Q Consensus 586 ~~~~--~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~ 651 (793)
+..- .+.... .+.+. ...+|...+....+.|..+.|..+|.+..+. + ......|...+..-.+.
T Consensus 405 l~~l~~~~~~~~-~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~ 482 (679)
T 4e6h_A 405 IDRIHLDLAALM-EDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHI 482 (679)
T ss_dssp HHHHHHHHHHHH-HHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTT
T ss_pred HHHHHHHhhhhh-hccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHh
Confidence 5410 000000 11111 1235777777777788888999999888875 2 22334444333333343
Q ss_pred -CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCChHHHH
Q 003829 652 -ENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP--DVITYNTFVASYAADSLFVEAL 728 (793)
Q Consensus 652 -g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~ 728 (793)
++.+.|.++|+..++. ++.+...|..++......|+.+.|+.+|++++.....+ ....|..++..-.+.|+.+.+.
T Consensus 483 ~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~ 561 (679)
T 4e6h_A 483 SKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVR 561 (679)
T ss_dssp TSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHH
T ss_pred CCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 4588899999988876 44466677788887778888999999999888753322 2367778887778888888888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHH
Q 003829 729 DVVRYMIKQGCKPNQNTYNSIVDGY 753 (793)
Q Consensus 729 ~~~~~~~~~~~~p~~~~~~~l~~~~ 753 (793)
++.+++.+. .|+......+++.|
T Consensus 562 ~v~~R~~~~--~P~~~~~~~f~~ry 584 (679)
T 4e6h_A 562 TLEKRFFEK--FPEVNKLEEFTNKY 584 (679)
T ss_dssp HHHHHHHHH--STTCCHHHHHHHHT
T ss_pred HHHHHHHHh--CCCCcHHHHHHHHh
Confidence 888888874 34433444444444
No 47
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.58 E-value=1.8e-13 Score=132.51 Aligned_cols=209 Identities=11% Similarity=0.086 Sum_probs=163.4
Q ss_pred CHhhHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 003829 558 NELTYSSLLHAYANGREIDQMLALSEEIYSERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPS 637 (793)
Q Consensus 558 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 637 (793)
....+..+...+...|++++|+..+++++. ..+.+...+..++..+...|++++|...++++.+.. +.+
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~----------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~ 90 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIE----------ENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSA 90 (243)
T ss_dssp --------------------CCTTHHHHHT----------TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHH----------hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-Ccc
Confidence 455666777778888899999888876542 224467888899999999999999999999998874 567
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003829 638 LTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVAS 717 (793)
Q Consensus 638 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 717 (793)
...+..++..+...|++++|...++++.+.. +.+...+..++.++...|++++|..+++++.+.... +...+..++.+
T Consensus 91 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~ 168 (243)
T 2q7f_A 91 ATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN-DTEARFQFGMC 168 (243)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc-cHHHHHHHHHH
Confidence 8889999999999999999999999999863 446788999999999999999999999999984322 57889999999
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHH
Q 003829 718 YAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKEL 780 (793)
Q Consensus 718 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 780 (793)
+...|++++|+..++++++.. +.+..++..++.+|.+.|++++|...++++++.+|++....
T Consensus 169 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 230 (243)
T 2q7f_A 169 LANEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLAL 230 (243)
T ss_dssp HHHHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHH
Confidence 999999999999999998853 34588899999999999999999999999999999865543
No 48
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.58 E-value=5.2e-12 Score=124.60 Aligned_cols=221 Identities=13% Similarity=-0.019 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 003829 208 VYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGK----MGMPWNKIMALVEGMKSAGVKPDSYTFN 283 (793)
Q Consensus 208 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~~a~~~~~~~~~~~~~p~~~~~~ 283 (793)
..++..+...+...|++++|+..|++..+.+ +..++..+...|.. .+ ++++|...|++..+.+ +...+.
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~-~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEK-NLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC-CHHHHHHHHHHHHHTT---CHHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCC-CHHHHHHHHHHHHHCC---CHHHHH
Confidence 3344444444444445555555554444421 33344444444444 44 4444444444444432 333444
Q ss_pred HHHHHHHc----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCChhHHHHH
Q 003829 284 TLISCCRR----GSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGK----CRRPKEAMQVLREMKINGCLPSIVTYNSL 355 (793)
Q Consensus 284 ~l~~~~~~----~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 355 (793)
.+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|+..|++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 44444444 444444444444444432 34444444444444 455555555555544432 33344444
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003829 356 ISAYAR----DGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEK----AGKDESAMKVFEEMRSAGCKPNICTFNALIK 427 (793)
Q Consensus 356 i~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 427 (793)
...|.. .+++++|++.|++..+.+ +...+..+...|.. .+++++|...+++..+.+ +...+..+..
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~ 226 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 226 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 444444 445555555555544432 23344444444444 445555555555444432 1334444444
Q ss_pred HHHh----cCCHHHHHHHHHHHHh
Q 003829 428 MHGN----RGNFVEMMKVFDEINK 447 (793)
Q Consensus 428 ~~~~----~g~~~~A~~~~~~~~~ 447 (793)
+|.. .+++++|.+.|++..+
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~ 250 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCK 250 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHH
T ss_pred HHHcCCCcccCHHHHHHHHHHHHH
Confidence 4444 4444444444444443
No 49
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.57 E-value=4.7e-13 Score=130.40 Aligned_cols=207 Identities=11% Similarity=0.036 Sum_probs=175.8
Q ss_pred HhhHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 003829 559 ELTYSSLLHAYANGREIDQMLALSEEIYSERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSL 638 (793)
Q Consensus 559 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 638 (793)
...+..+...+...|++++|+..+++++.. .+.+...+..++..+...|++++|.+.++++.+.. +.+.
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~----------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~ 105 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEI----------DPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNA 105 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHH----------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhc----------CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcH
Confidence 455667777888888899888888776531 24467889999999999999999999999998875 5578
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003829 639 TTYNTLMYMYSRSENFARAEDVLREILAKGIKP-DIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVAS 717 (793)
Q Consensus 639 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 717 (793)
..+..++..|...|++++|+.+++++.+.+..| +...+..++.++...|++++|.++++++.+.... +...+..++.+
T Consensus 106 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~ 184 (252)
T 2ho1_A 106 RVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN-QPSVALEMADL 184 (252)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc-cHHHHHHHHHH
Confidence 889999999999999999999999998832334 4678889999999999999999999999984322 57889999999
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCH
Q 003829 718 YAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTK 778 (793)
Q Consensus 718 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 778 (793)
|...|++++|...++++++.. +.+...+..++..+.+.|++++|..+++++.+..|++..
T Consensus 185 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 244 (252)
T 2ho1_A 185 LYKEREYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLE 244 (252)
T ss_dssp HHHTTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHH
Confidence 999999999999999998742 345788889999999999999999999999999998654
No 50
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.57 E-value=5.8e-11 Score=129.84 Aligned_cols=448 Identities=9% Similarity=0.025 Sum_probs=298.4
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC---HHHHHHHH
Q 003829 296 EEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGL---LEEAMELK 372 (793)
Q Consensus 296 ~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~ 372 (793)
.+....+++.+..+ +-|...|..++..+.+.++++.+..+|+.+... .+.....|...+..-.+.|+ ++.+.++|
T Consensus 49 ~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lf 126 (679)
T 4e6h_A 49 SDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVL 126 (679)
T ss_dssp SCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHH
Confidence 34444556655554 458899999999999999999999999999887 66677789999998888888 99999999
Q ss_pred HHHHHcC-CCCCHHHHHHHHHHHHHcCCH--------HHHHHHHHHHHH-CCC-CC-CHHHHHHHHHHHH---------h
Q 003829 373 TQMVEIG-ITPDVFTYTTLLSGFEKAGKD--------ESAMKVFEEMRS-AGC-KP-NICTFNALIKMHG---------N 431 (793)
Q Consensus 373 ~~m~~~g-~~~~~~~~~~li~~~~~~g~~--------~~a~~~~~~~~~-~~~-~~-~~~~~~~l~~~~~---------~ 431 (793)
++.+... ..|+...|...+....+.++. +...++|+..+. .|. .+ +...|...+.... .
T Consensus 127 eRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ee 206 (679)
T 4e6h_A 127 ARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEE 206 (679)
T ss_dssp HHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHH
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHH
Confidence 9998763 137888777777666655543 334577777554 455 44 4567877776543 2
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 003829 432 RGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSI 511 (793)
Q Consensus 432 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 511 (793)
+++++.+.++|++++......-..+|......-...+. ..+.+++.+ ...+++.|...
T Consensus 207 q~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e---------------------~~~~y~~Ar~~ 264 (679)
T 4e6h_A 207 QQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQ-LTARRHIGE---------------------LSAQYMNARSL 264 (679)
T ss_dssp HHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCT-TTHHHHHHH---------------------HHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCc-chHHHHHHH---------------------hhHHHHHHHHH
Confidence 34577888888888753211112333322211111010 001111111 01123334444
Q ss_pred HHHHHHC--CCC---------------C-----C---HHHHHHHHHHHHhcC-------ChHHHHHHHHHHhcCCCCCCH
Q 003829 512 YKRMLEA--GVT---------------P-----D---LSTYNAVLAALARGG-------MWEQSEKIFAEMKGGRCKPNE 559 (793)
Q Consensus 512 ~~~~~~~--~~~---------------~-----~---~~~~~~l~~~~~~~g-------~~~~A~~~~~~~~~~~~~p~~ 559 (793)
+.++... ++. | + ...|...+..-...+ ..+.+..+|++.+.. ++-..
T Consensus 265 ~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~ 343 (679)
T 4e6h_A 265 YQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAP 343 (679)
T ss_dssp HHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCH
T ss_pred HHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCH
Confidence 4332211 110 1 1 234555554333322 123456778887764 34477
Q ss_pred hhHHHHHHHHHcCCCHHHHH-HHHHHHHhHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-----
Q 003829 560 LTYSSLLHAYANGREIDQML-ALSEEIYSERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSG----- 633 (793)
Q Consensus 560 ~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----- 633 (793)
..|...+..+...|+.++|. .+++..+. .++.+...+...+....+.|++++|.++|+.+.+..
T Consensus 344 ~lW~~ya~~~~~~~~~~~a~r~il~rAi~----------~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~ 413 (679)
T 4e6h_A 344 EIWFNMANYQGEKNTDSTVITKYLKLGQQ----------CIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLA 413 (679)
T ss_dssp HHHHHHHHHHHHHSCCTTHHHHHHHHHHH----------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHH----------hCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhh
Confidence 78888888888888888886 88876542 234567778888888899999999999999988641
Q ss_pred -----CCC-----------CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc-CCHHHHHHHH
Q 003829 634 -----FTP-----------SLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRN-GRMKEASRIF 696 (793)
Q Consensus 634 -----~~~-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~ 696 (793)
.+. ...+|...+....+.|+.+.|..+|.++.+.........|...+..-.+. ++.+.|.++|
T Consensus 414 ~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~if 493 (679)
T 4e6h_A 414 ALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVL 493 (679)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHH
T ss_pred hhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 121 13468888888888999999999999999851112233444433333344 4599999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCC
Q 003829 697 SEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP--NQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDP 774 (793)
Q Consensus 697 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 774 (793)
+..++. ..-+...+..++......|+.+.|..+|+++++....+ ....|...+..-.+.|+.+.+..+.+++.+..|
T Consensus 494 e~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P 572 (679)
T 4e6h_A 494 ELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFP 572 (679)
T ss_dssp HHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHST
T ss_pred HHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 999984 22255667788888888999999999999998753222 256788888888899999999999999999999
Q ss_pred CCCHH
Q 003829 775 HVTKE 779 (793)
Q Consensus 775 ~~~~~ 779 (793)
+++..
T Consensus 573 ~~~~~ 577 (679)
T 4e6h_A 573 EVNKL 577 (679)
T ss_dssp TCCHH
T ss_pred CCcHH
Confidence 97654
No 51
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.57 E-value=9.5e-13 Score=134.84 Aligned_cols=249 Identities=10% Similarity=0.027 Sum_probs=187.3
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003829 172 RGSVIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGR-YREAVMVFKKMEEEGCKPTLITYNVIL 250 (793)
Q Consensus 172 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~p~~~~~~~ll 250 (793)
...++..+..++...|++++|+..++.++...+. +..+|+.+..++...|+ +++|+..|+++.+..+. +...|+.+.
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g 173 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHH
Confidence 4566777778888899999999999998887655 78889999999999997 99999999999987533 778889899
Q ss_pred HHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCC
Q 003829 251 NVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGK-CRR 329 (793)
Q Consensus 251 ~~~~~~g~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~-~g~ 329 (793)
.++.+.| ++++|+..|+++++.... +...|..+..++.+.|++++|+..++++++.. +-+...|+.+..++.+ .|.
T Consensus 174 ~~~~~~g-~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~ 250 (382)
T 2h6f_A 174 VLVEWLR-DPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGY 250 (382)
T ss_dssp HHHHHHT-CCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCS
T ss_pred HHHHHcc-CHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCc
Confidence 9998888 889999999988887655 67788888888888888888888888888874 3367788888888888 555
Q ss_pred hHHH-----HHHHHHHHHcCCCCChhHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC----
Q 003829 330 PKEA-----MQVLREMKINGCLPSIVTYNSLISAYARDG--LLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAG---- 398 (793)
Q Consensus 330 ~~~A-----~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g---- 398 (793)
.++| +..|++.+.. .+-+...|+.+...+...| ++++|++.+.++ +. .+.+...+..+...|.+.|
T Consensus 251 ~~eA~~~~el~~~~~Al~l-~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~ 327 (382)
T 2h6f_A 251 NDRAVLEREVQYTLEMIKL-VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQC 327 (382)
T ss_dssp CSHHHHHHHHHHHHHHHHH-STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccc
Confidence 5777 4777777765 2335667888887787777 578888888777 32 2445667777777777653
Q ss_pred -----CHHHHHHHHHHH-HHCCCCCCHHHHHHHHHHH
Q 003829 399 -----KDESAMKVFEEM-RSAGCKPNICTFNALIKMH 429 (793)
Q Consensus 399 -----~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~ 429 (793)
.+++|+++++++ .+.. +.....|..+...+
T Consensus 328 ~~~~~~~~~A~~~~~~l~~~~D-P~r~~~w~~~~~~l 363 (382)
T 2h6f_A 328 DNKEDILNKALELCEILAKEKD-TIRKEYWRYIGRSL 363 (382)
T ss_dssp SSHHHHHHHHHHHHHHHHHTTC-GGGHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhC-chhHHHHHHHHHHH
Confidence 247788888877 5442 22334455444443
No 52
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.56 E-value=6.6e-13 Score=131.07 Aligned_cols=251 Identities=8% Similarity=0.038 Sum_probs=183.5
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCC--HhhHHHHHH
Q 003829 490 DTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPN--ELTYSSLLH 567 (793)
Q Consensus 490 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~ 567 (793)
..+......+...|++++|...|+++.+.... +...+..+...+...|++++|...+++..+....++ ...|..+..
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 34455666777778888888888887776443 455677777778888888888888888776321111 223677778
Q ss_pred HHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 003829 568 AYANGREIDQMLALSEEIYSERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYM 647 (793)
Q Consensus 568 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 647 (793)
.+...|++++|+..+++++.. .+.+..++..+...|...|++++|...+++..+.. +.+...+..+...
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~----------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~ 151 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDR----------DTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQA 151 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH----------STTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHhc----------CcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHH
Confidence 888888888888888766531 13355788888999999999999999999988874 5677788888834
Q ss_pred HHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHCC-CCCC------HHHHHHHHHH
Q 003829 648 YSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGR---MKEASRIFSEMRDSG-LVPD------VITYNTFVAS 717 (793)
Q Consensus 648 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~-~~p~------~~~~~~l~~~ 717 (793)
+...+++++|+..++++.+.. +.+...+..+..++...|+ +++|...++++.+.. ..|+ ..+|..++..
T Consensus 152 ~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 230 (272)
T 3u4t_A 152 YYYNKEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYY 230 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHH
Confidence 444559999999999999863 3347788888889988888 888999999998731 1233 2578889999
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHc
Q 003829 718 YAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCK 755 (793)
Q Consensus 718 ~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~ 755 (793)
|...|++++|++.++++++. .| +...+..+......
T Consensus 231 ~~~~~~~~~A~~~~~~al~~--~p~~~~a~~~l~~~~~~ 267 (272)
T 3u4t_A 231 YTINRDKVKADAAWKNILAL--DPTNKKAIDGLKMKLEH 267 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHC-----
T ss_pred HHHcCCHHHHHHHHHHHHhc--CccHHHHHHHhhhhhcc
Confidence 99999999999999999985 45 46666666554433
No 53
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.55 E-value=6.2e-13 Score=122.35 Aligned_cols=171 Identities=12% Similarity=0.007 Sum_probs=153.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003829 602 DIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIF 681 (793)
Q Consensus 602 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 681 (793)
+..+|..++..|...|++++|++.|++..+.. |.+..++..+..+|.+.|++++|+..++++.... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 56789999999999999999999999999875 6788999999999999999999999999999863 446778888899
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHH
Q 003829 682 AYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYE 761 (793)
Q Consensus 682 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 761 (793)
.+...++++.|...++++.+.... +...+..++.+|...|++++|++.++++++.+ +.+..+|..++.+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence 999999999999999999984332 56889999999999999999999999999853 3358899999999999999999
Q ss_pred HHHHHHHHhhCCCCC
Q 003829 762 AITFVNNLSKLDPHV 776 (793)
Q Consensus 762 A~~~~~~~~~~~~~~ 776 (793)
|++.++++++.+|++
T Consensus 160 A~~~~~~al~~~p~~ 174 (184)
T 3vtx_A 160 AVKYFKKALEKEEKK 174 (184)
T ss_dssp HHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHhCCccC
Confidence 999999999998864
No 54
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.55 E-value=1.6e-12 Score=124.00 Aligned_cols=210 Identities=11% Similarity=-0.005 Sum_probs=175.6
Q ss_pred CHhhHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 003829 558 NELTYSSLLHAYANGREIDQMLALSEEIYSERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPS 637 (793)
Q Consensus 558 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 637 (793)
+...+..+...+...|++++|+..+++++. . .+.+...+..++..+...|++++|.+.++++.+.. +.+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--------~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~ 75 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALK--------S--DPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDS 75 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--------H--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHH--------h--CccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCC
Confidence 455677778888888999999888876543 1 13457788999999999999999999999998864 567
Q ss_pred HHHHHHHHHHHHcc-CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003829 638 LTTYNTLMYMYSRS-ENFARAEDVLREILAKGIKPD-IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFV 715 (793)
Q Consensus 638 ~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 715 (793)
..++..++..+... |++++|...++++.+.+..|+ ...+..++.++...|++++|..+++++.+.... +...+..++
T Consensus 76 ~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la 154 (225)
T 2vq2_A 76 AEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ-FPPAFKELA 154 (225)
T ss_dssp HHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHH
Confidence 88899999999999 999999999999998322333 678899999999999999999999999984322 478899999
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHH
Q 003829 716 ASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKE 779 (793)
Q Consensus 716 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 779 (793)
.++...|++++|...++++++.....+...+..++..+...|+.++|..+++.+.+..|++...
T Consensus 155 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 218 (225)
T 2vq2_A 155 RTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEEL 218 (225)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHH
Confidence 9999999999999999999885311457778888888899999999999999999998886543
No 55
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.54 E-value=2.9e-12 Score=124.73 Aligned_cols=201 Identities=12% Similarity=-0.048 Sum_probs=148.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003829 173 GSVIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNV 252 (793)
Q Consensus 173 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~ 252 (793)
..++..++..+...|++++|...|+.+.+..+. +..++..++.++...|++++|...|+++.+.. +.+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPS-SADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 456777777888888888888888888776443 67788888888888899999999888888764 2367778888888
Q ss_pred HHhcCCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 003829 253 YGKMGMPWNKIMALVEGMKSAGVKP-DSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPK 331 (793)
Q Consensus 253 ~~~~g~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 331 (793)
|...| ++++|.+.++++.+.+..| +...+..+...+...|++++|..+++++.+.. +.+...+..+...|.+.|+++
T Consensus 115 ~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~ 192 (252)
T 2ho1_A 115 LYEQK-RYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYV 192 (252)
T ss_dssp HHHTT-CHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHh-HHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHH
Confidence 88888 7888888888877633334 34566666677777788888888887777653 235666777777777777788
Q ss_pred HHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 003829 332 EAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEI 378 (793)
Q Consensus 332 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 378 (793)
+|...++++.+. .+.+...+..+...+...|++++|.+.++++.+.
T Consensus 193 ~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 193 PARQYYDLFAQG-GGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHHTT-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-CcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 887777777664 2345556777777777777777777777777765
No 56
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.54 E-value=2.5e-13 Score=134.37 Aligned_cols=224 Identities=12% Similarity=-0.029 Sum_probs=102.4
Q ss_pred cCCChHHHHHHHHHHHhccCCCCCccchHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCH
Q 003829 145 FHKKTDLALDVFEWFRSCCSKDGNLVLRGSVIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRY 224 (793)
Q Consensus 145 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 224 (793)
..|+++.|+..|+.+.+. .....+.+..++..++.++...|++++|...|+.+.+..+. +..++..++.++...|++
T Consensus 17 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 17 PTLQQEVILARMEQILAS--RALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CCHHHHHHHHHHHHHHTS--SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCH
T ss_pred ccchHHHHHHHHHHHHhc--ccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccCH
Confidence 455566666666665551 11111224445555555555555666665555555554332 455555555555555555
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 003829 225 REAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEE 304 (793)
Q Consensus 225 ~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~ 304 (793)
++|+..|+++.+.. +.+..++..+...|.+.| ++++|...++++.+.. |+.......+..+...|++++|...+++
T Consensus 94 ~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g-~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 169 (275)
T 1xnf_A 94 DAAYEAFDSVLELD-PTYNYAHLNRGIALYYGG-RDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQ 169 (275)
T ss_dssp HHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhc-cHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 55555555555542 123445555555555555 5555555555555432 2222222222233334455555555544
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC---CChhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003829 305 MKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCL---PSIVTYNSLISAYARDGLLEEAMELKTQMVE 377 (793)
Q Consensus 305 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 377 (793)
..... +++...+ .++..+...++.++|...+++....... .+..++..+...|.+.|++++|.+.|+++.+
T Consensus 170 ~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 243 (275)
T 1xnf_A 170 HFEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA 243 (275)
T ss_dssp HHHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44331 1122222 2333444444444444444444221100 0023344444444444444444444444443
No 57
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.54 E-value=7.2e-13 Score=131.01 Aligned_cols=247 Identities=8% Similarity=-0.040 Sum_probs=127.3
Q ss_pred ccCCHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHcCCCHHH
Q 003829 501 RCGSFDQAMSIYKRMLEAGVT---PDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQ 577 (793)
Q Consensus 501 ~~g~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 577 (793)
..|++++|.+.++++.+.... .+...+..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 445666777777766665321 124455566666666666666666666666542 2345566666666666666666
Q ss_pred HHHHHHHHHhHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHH
Q 003829 578 MLALSEEIYSERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARA 657 (793)
Q Consensus 578 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 657 (793)
|+..+++++.. .+.+..++..++..+...|++++|...++++.+.. |+.......+..+...|++++|
T Consensus 96 A~~~~~~al~~----------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A 163 (275)
T 1xnf_A 96 AYEAFDSVLEL----------DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQA 163 (275)
T ss_dssp HHHHHHHHHHH----------CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHhc----------CccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHH
Confidence 66666554320 12234555666666666666666666666665542 2222222233333445666666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 003829 658 EDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP---DVITYNTFVASYAADSLFVEALDVVRYM 734 (793)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 734 (793)
...+++..... +++...+ .++..+...++.++|...++++.+..... +..++..++.+|...|++++|+..++++
T Consensus 164 ~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 241 (275)
T 1xnf_A 164 KEVLKQHFEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLA 241 (275)
T ss_dssp HHHHHHHHHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 66665555431 2232222 24444555555566666665555421110 1245555666666666666666666666
Q ss_pred HHcCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 003829 735 IKQGCKPNQNTYNSIVDGYCKLNQRYEAITFV 766 (793)
Q Consensus 735 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 766 (793)
++. .|+. +.....++...|++++|++.+
T Consensus 242 l~~--~p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 242 VAN--NVHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HTT--CCTT--CHHHHHHHHHHHHHHHC----
T ss_pred HhC--Cchh--HHHHHHHHHHHHHHHhhHHHH
Confidence 542 2321 112233455555666555544
No 58
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.54 E-value=1.3e-13 Score=145.63 Aligned_cols=278 Identities=12% Similarity=0.077 Sum_probs=190.5
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHhcC----CC-CCCHhhHH
Q 003829 493 NTLISAYSRCGSFDQAMSIYKRMLEAGVTPDL----STYNAVLAALARGGMWEQSEKIFAEMKGG----RC-KPNELTYS 563 (793)
Q Consensus 493 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~p~~~~~~ 563 (793)
..+...+...|++++|...|+++.+.+.. +. ..+..+...+...|++++|...+++.... +. .....++.
T Consensus 52 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 130 (411)
T 4a1s_A 52 ALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSG 130 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHH
Confidence 33444555556666666666655554322 22 34555555566666666666666555431 11 11334566
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCC-----------------HHHHHHH
Q 003829 564 SLLHAYANGREIDQMLALSEEIYSERAFLELKKKGF-SPDIPTLNAMISIYGRRQM-----------------VAKTNEI 625 (793)
Q Consensus 564 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~-----------------~~~A~~~ 625 (793)
.+...|...|++++|...+++++.. ....+- .....++..+...|...|+ +++|.+.
T Consensus 131 ~l~~~~~~~g~~~~A~~~~~~al~~-----~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~ 205 (411)
T 4a1s_A 131 NLGNTLKVMGRFDEAAICCERHLTL-----ARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEF 205 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH-----HHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHH-----HHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHH
Confidence 6667777778888887777766541 111111 1124577888889999999 9999999
Q ss_pred HHHHHhC----CC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHHcCCHHHHHHH
Q 003829 626 LHFMNDS----GF-TPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIK-PD----IISYNTVIFAYCRNGRMKEASRI 695 (793)
Q Consensus 626 ~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~ 695 (793)
+++..+. +. +....++..+...|...|++++|+..+++..+.... .+ ...+..++.+|...|++++|..+
T Consensus 206 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 285 (411)
T 4a1s_A 206 YQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEH 285 (411)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 8887642 11 112346788889999999999999999998864100 11 23788899999999999999999
Q ss_pred HHHHHHCCCC-C----CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHccCCHHHHHHH
Q 003829 696 FSEMRDSGLV-P----DVITYNTFVASYAADSLFVEALDVVRYMIKQ----GCKP-NQNTYNSIVDGYCKLNQRYEAITF 765 (793)
Q Consensus 696 ~~~~~~~~~~-p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~ 765 (793)
++++++.... . ...++..++.+|...|++++|+..++++++. +..+ ...++..++.+|.+.|++++|..+
T Consensus 286 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 365 (411)
T 4a1s_A 286 YKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKY 365 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 9999862110 1 1467889999999999999999999998752 1111 145788899999999999999999
Q ss_pred HHHHhhCCCCC
Q 003829 766 VNNLSKLDPHV 776 (793)
Q Consensus 766 ~~~~~~~~~~~ 776 (793)
++++++.....
T Consensus 366 ~~~al~~~~~~ 376 (411)
T 4a1s_A 366 AEQHLQLAXXX 376 (411)
T ss_dssp HHHHHHHCCHH
T ss_pred HHHHHHHHhhc
Confidence 99999987653
No 59
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.53 E-value=6.5e-12 Score=119.74 Aligned_cols=202 Identities=10% Similarity=-0.059 Sum_probs=104.7
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003829 172 RGSVIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILN 251 (793)
Q Consensus 172 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~ 251 (793)
+..++..++..+...|++++|...++.+.+..+. +..++..++.++...|++++|..+|+++.+.. +.+..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPK-NELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 4455556666666666666666666666554332 45566666666666666666666666665543 224455555555
Q ss_pred HHHhc-CCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 003829 252 VYGKM-GMPWNKIMALVEGMKSAGVKPD-SYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRR 329 (793)
Q Consensus 252 ~~~~~-g~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 329 (793)
.+... | ++++|...++++.+.+..|+ ...+..+...+...|++++|...++++.+.. +.+...+..+...+.+.|+
T Consensus 85 ~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~ 162 (225)
T 2vq2_A 85 FLCGRLN-RPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQ 162 (225)
T ss_dssp HHHTTTC-CHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHhcC-cHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCC
Confidence 55555 5 55666666555555222222 3344444445555555555555555554432 1234444455555555555
Q ss_pred hHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003829 330 PKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVE 377 (793)
Q Consensus 330 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 377 (793)
+++|...++++.+.....+...+..+...+...|+.++|..+++.+.+
T Consensus 163 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 163 LGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 555555555544432112334444444444555555555555554443
No 60
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.52 E-value=1.2e-12 Score=126.64 Aligned_cols=201 Identities=14% Similarity=0.075 Sum_probs=123.3
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003829 172 RGSVIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILN 251 (793)
Q Consensus 172 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~ 251 (793)
...++..+...+...|++++|...|+.+.+..+. +..++..++.++...|++++|+..|+++.+.. +.+...+..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKE-DAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 4455666666777777888888888777765443 67777777778888888888888888777664 235667777777
Q ss_pred HHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 003829 252 VYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPK 331 (793)
Q Consensus 252 ~~~~~g~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 331 (793)
.+...| ++++|.+.++++.+.... +...+..+...+...|++++|..+++++.+.. +.+...+..+...+.+.|+++
T Consensus 100 ~~~~~~-~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 100 VYVVKE-MYKEAKDMFEKALRAGME-NGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHTT-CHHHHHHHHHHHHHHTCC-SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHhc-cHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHH
Confidence 777777 777777777777665432 45566666666777777777777777766653 235556666677777777777
Q ss_pred HHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 003829 332 EAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEI 378 (793)
Q Consensus 332 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 378 (793)
+|...++++.+. .+.+..++..+...|...|++++|.+.++++.+.
T Consensus 177 ~A~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 177 EALSQFAAVTEQ-DPGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 777777776654 2234556666667777777777777777776665
No 61
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.51 E-value=4.4e-13 Score=141.16 Aligned_cols=279 Identities=11% Similarity=0.045 Sum_probs=185.5
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHhcC----CCCC-CHhh
Q 003829 491 TFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPD----LSTYNAVLAALARGGMWEQSEKIFAEMKGG----RCKP-NELT 561 (793)
Q Consensus 491 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~~ 561 (793)
.+......+...|++++|...|+++.+.+.. + ...+..+...+...|++++|...+++.... +..+ ...+
T Consensus 11 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 89 (406)
T 3sf4_A 11 ELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 89 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 3444444555555555555555555544222 2 234445555555556666666555554321 1111 2334
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCC--------------------HH
Q 003829 562 YSSLLHAYANGREIDQMLALSEEIYSERAFLELKKKGF-SPDIPTLNAMISIYGRRQM--------------------VA 620 (793)
Q Consensus 562 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~--------------------~~ 620 (793)
+..+...+...|++++|+..+++.+.. ....+. .....++..+...|...|+ ++
T Consensus 90 ~~~la~~~~~~g~~~~A~~~~~~al~~-----~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 90 SGNLGNTLKVLGNFDEAIVCCQRHLDI-----SRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-----HHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH-----HHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 555666677777777777777765431 111111 1114467788888888999 99
Q ss_pred HHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHHcCCHH
Q 003829 621 KTNEILHFMNDS----GF-TPSLTTYNTLMYMYSRSENFARAEDVLREILAKGI-KPD----IISYNTVIFAYCRNGRMK 690 (793)
Q Consensus 621 ~A~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~ 690 (793)
+|...+++..+. +. +....++..+...|...|++++|+..+++..+... .++ ..++..++.+|...|+++
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 999998877642 11 11234678888999999999999999999885310 112 347888999999999999
Q ss_pred HHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHccCCHH
Q 003829 691 EASRIFSEMRDS----GLVPD-VITYNTFVASYAADSLFVEALDVVRYMIKQ----GCKPN-QNTYNSIVDGYCKLNQRY 760 (793)
Q Consensus 691 ~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~ 760 (793)
+|..+++++.+. +..+. ..++..++..|...|++++|+..++++++. +..+. ..++..++.+|.+.|+++
T Consensus 245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 324 (406)
T 3sf4_A 245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHD 324 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 999999999862 11111 467889999999999999999999998753 11111 567889999999999999
Q ss_pred HHHHHHHHHhhCCCC
Q 003829 761 EAITFVNNLSKLDPH 775 (793)
Q Consensus 761 ~A~~~~~~~~~~~~~ 775 (793)
+|..+++++++..+.
T Consensus 325 ~A~~~~~~al~~~~~ 339 (406)
T 3sf4_A 325 QAMHFAEKHLEISRE 339 (406)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999887433
No 62
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.50 E-value=4.2e-13 Score=137.13 Aligned_cols=274 Identities=12% Similarity=0.068 Sum_probs=179.2
Q ss_pred HHHHhccCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHhcC----CCCC-CHhhHHHHH
Q 003829 496 ISAYSRCGSFDQAMSIYKRMLEAGVTPD----LSTYNAVLAALARGGMWEQSEKIFAEMKGG----RCKP-NELTYSSLL 566 (793)
Q Consensus 496 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~~~~~l~ 566 (793)
...+...|++++|...|+++.+.... + ...+..+...+...|++++|...+++.... +..+ ...++..+.
T Consensus 12 g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 90 (338)
T 3ro2_A 12 GERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLG 90 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHH
Confidence 33444455555555555555443222 2 234444455555555555555555544321 1011 233455566
Q ss_pred HHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCC--------------------HHHHHHH
Q 003829 567 HAYANGREIDQMLALSEEIYSERAFLELKKKGFSP-DIPTLNAMISIYGRRQM--------------------VAKTNEI 625 (793)
Q Consensus 567 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~--------------------~~~A~~~ 625 (793)
..+...|++++|...+++.+.. ....+..+ ...++..+...+...|+ +++|...
T Consensus 91 ~~~~~~g~~~~A~~~~~~al~~-----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 91 NTLKVLGNFDEAIVCCQRHLDI-----SRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH-----HHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHH-----HHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 6677777777777777665431 11111111 13467778888888888 9999988
Q ss_pred HHHHHhC----C-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHHcCCHHHHHHH
Q 003829 626 LHFMNDS----G-FTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGI-KPD----IISYNTVIFAYCRNGRMKEASRI 695 (793)
Q Consensus 626 ~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~A~~~ 695 (793)
+++..+. + .+....++..+...+...|++++|...+++..+... ..+ ..++..++..+...|++++|.++
T Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 245 (338)
T 3ro2_A 166 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 245 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8876542 1 111234678888899999999999999999875310 011 34788889999999999999999
Q ss_pred HHHHHHCCC-CCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHccCCHHHHHHH
Q 003829 696 FSEMRDSGL-VPD----VITYNTFVASYAADSLFVEALDVVRYMIKQ----GCKPN-QNTYNSIVDGYCKLNQRYEAITF 765 (793)
Q Consensus 696 ~~~~~~~~~-~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~ 765 (793)
++++.+... ..+ ..++..++.+|...|++++|...++++++. +..+. ..++..++..|.+.|++++|..+
T Consensus 246 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 325 (338)
T 3ro2_A 246 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHF 325 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 999886211 112 467888999999999999999999998752 11111 45778899999999999999999
Q ss_pred HHHHhhCCCC
Q 003829 766 VNNLSKLDPH 775 (793)
Q Consensus 766 ~~~~~~~~~~ 775 (793)
++++++..++
T Consensus 326 ~~~a~~~~~~ 335 (338)
T 3ro2_A 326 AEKHLEISRE 335 (338)
T ss_dssp HHHHHHC---
T ss_pred HHHHHHHHHh
Confidence 9999998765
No 63
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.49 E-value=5.7e-13 Score=140.30 Aligned_cols=231 Identities=12% Similarity=-0.011 Sum_probs=155.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhcCCC-CC----CHhhHHHHHHHHHcCCC--------------------HHHHHH
Q 003829 526 TYNAVLAALARGGMWEQSEKIFAEMKGGRC-KP----NELTYSSLLHAYANGRE--------------------IDQMLA 580 (793)
Q Consensus 526 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p----~~~~~~~l~~~~~~~~~--------------------~~~a~~ 580 (793)
++..+...+...|++++|...+++..+... .. ...++..+...+...|+ +++|..
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~ 168 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVD 168 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHH
Confidence 344444455555555555555554432100 00 12345556666666666 777777
Q ss_pred HHHHHHhHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHccCCH
Q 003829 581 LSEEIYSERAFLELKKKGFSP-DIPTLNAMISIYGRRQMVAKTNEILHFMNDSGF-TPS----LTTYNTLMYMYSRSENF 654 (793)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~ 654 (793)
.+++.+. .....+..+ ...++..+...+...|++++|...+++..+... .++ ..++..+...|...|++
T Consensus 169 ~~~~al~-----~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 243 (406)
T 3sf4_A 169 FYEENLS-----LVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEF 243 (406)
T ss_dssp HHHHHHH-----HHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHH-----HHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCh
Confidence 7766543 112222111 234788888999999999999999998875310 112 23678889999999999
Q ss_pred HHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCh
Q 003829 655 ARAEDVLREILAKGIK-PD----IISYNTVIFAYCRNGRMKEASRIFSEMRDSGL-VPD----VITYNTFVASYAADSLF 724 (793)
Q Consensus 655 ~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~g~~ 724 (793)
++|...+++....... .+ ..++..++..|...|++++|..+++++.+... ..+ ..++..++.+|...|++
T Consensus 244 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 323 (406)
T 3sf4_A 244 ETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNH 323 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 9999999998753100 11 46788899999999999999999999986211 112 46788999999999999
Q ss_pred HHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHccCCHHH
Q 003829 725 VEALDVVRYMIKQ----GCKPN-QNTYNSIVDGYCKLNQRYE 761 (793)
Q Consensus 725 ~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~ 761 (793)
++|++.++++++. +..+. ..++..++..+...|+...
T Consensus 324 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 324 DQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 9999999998752 21222 5677888888888887633
No 64
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.48 E-value=1e-12 Score=138.69 Aligned_cols=270 Identities=13% Similarity=0.063 Sum_probs=143.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CC-CCCHHH
Q 003829 175 VIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDV----YAYTSLITTYASNGRYREAVMVFKKMEEE----GC-KPTLIT 245 (793)
Q Consensus 175 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~p~~~~ 245 (793)
.+..+...+...|++++|...|+.+++.+.. +. .++..++.+|...|++++|+..|++..+. +. .....+
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 4445556666777777777777777665433 33 46677777777777777777777776543 10 112345
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHcCCC-----------------HHHHHHHHH
Q 003829 246 YNVILNVYGKMGMPWNKIMALVEGMKSAG-----VKPDSYTFNTLISCCRRGSL-----------------HEEAAGVFE 303 (793)
Q Consensus 246 ~~~ll~~~~~~g~~~~~a~~~~~~~~~~~-----~~p~~~~~~~l~~~~~~~~~-----------------~~~A~~~~~ 303 (793)
+..+...|...| ++++|...+++..+.. ......++..+...|...|+ +++|...++
T Consensus 129 ~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 129 SGNLGNTLKVMG-RFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 666666666666 6777777666654421 00112345555555556666 666666655
Q ss_pred HHHHC----CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CC----hhHHHHHHHHHHhcCCHHHHHHHHH
Q 003829 304 EMKLA----GFS-PDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCL-PS----IVTYNSLISAYARDGLLEEAMELKT 373 (793)
Q Consensus 304 ~~~~~----g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~g~~~~A~~~~~ 373 (793)
+..+. +.. ....++..+...|...|++++|+..+++..+.... .+ ..++..+...|...|++++|.+.++
T Consensus 208 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 287 (411)
T 4a1s_A 208 ENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYK 287 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 54332 111 11235555666666666666666666665432100 01 1245556666666666666666666
Q ss_pred HHHHcCCC-C----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-----CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003829 374 QMVEIGIT-P----DVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGC-----KPNICTFNALIKMHGNRGNFVEMMKVFD 443 (793)
Q Consensus 374 ~m~~~g~~-~----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 443 (793)
+..+.... . ...++..+...+...|++++|...+++..+... .....++..+...|...|++++|.+.++
T Consensus 288 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 367 (411)
T 4a1s_A 288 RTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAE 367 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 55443100 0 123444555555555666666555555443200 0012234444445555555555555554
Q ss_pred HHH
Q 003829 444 EIN 446 (793)
Q Consensus 444 ~~~ 446 (793)
+..
T Consensus 368 ~al 370 (411)
T 4a1s_A 368 QHL 370 (411)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 65
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.44 E-value=5.6e-11 Score=119.25 Aligned_cols=224 Identities=8% Similarity=-0.007 Sum_probs=175.7
Q ss_pred HHHHHHHHHHhcCCCCCCHhhHHHHHHHHH-------cCCCH-------HHHHHHHHHHHhHHHHHHHHHCCCCCCHHHH
Q 003829 541 EQSEKIFAEMKGGRCKPNELTYSSLLHAYA-------NGREI-------DQMLALSEEIYSERAFLELKKKGFSPDIPTL 606 (793)
Q Consensus 541 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 606 (793)
++|..+|++..... +.+...|..++..+. ..|++ ++|...+++.+. .-.+.+...|
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~---------~~~p~~~~~~ 102 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIS---------TLLKKNMLLY 102 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHT---------TTTTTCHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHH---------HhCcccHHHH
Confidence 57777777777642 335666766666554 35775 888888876542 1123356789
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-
Q 003829 607 NAMISIYGRRQMVAKTNEILHFMNDSGFTPSLT-TYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYC- 684 (793)
Q Consensus 607 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~- 684 (793)
..++..+.+.|++++|..+|+++.+.. +.+.. +|..++..+.+.|++++|..+|+++++.. +.+...|...+....
T Consensus 103 ~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~ 180 (308)
T 2ond_A 103 FAYADYEESRMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYY 180 (308)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTSS-SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcc-ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence 999999999999999999999999863 33444 89999999999999999999999999863 334555554444332
Q ss_pred HcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCC--CHHHHHHHHHHHHccCCHH
Q 003829 685 RNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSLFVEALDVVRYMIKQG-CKP--NQNTYNSIVDGYCKLNQRY 760 (793)
Q Consensus 685 ~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p--~~~~~~~l~~~~~~~g~~~ 760 (793)
..|++++|.++|+++++. .| +...|..++..+.+.|++++|..+|+++++.. +.| ....|..++..+.+.|+.+
T Consensus 181 ~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~ 258 (308)
T 2ond_A 181 CSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLA 258 (308)
T ss_dssp TSCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHH
T ss_pred HcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 369999999999999984 34 56889999999999999999999999999863 355 3678999999999999999
Q ss_pred HHHHHHHHHhhCCCCCCH
Q 003829 761 EAITFVNNLSKLDPHVTK 778 (793)
Q Consensus 761 ~A~~~~~~~~~~~~~~~~ 778 (793)
+|..+++++++..|++..
T Consensus 259 ~a~~~~~~a~~~~p~~~~ 276 (308)
T 2ond_A 259 SILKVEKRRFTAFREEYE 276 (308)
T ss_dssp HHHHHHHHHHHHTTTTTS
T ss_pred HHHHHHHHHHHHcccccc
Confidence 999999999999998543
No 66
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.44 E-value=2.7e-12 Score=131.05 Aligned_cols=200 Identities=16% Similarity=0.111 Sum_probs=106.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCC-CHHH
Q 003829 175 VIAVLISMLGKEGKVSVAASLLHGLHKDGFDID----VYAYTSLITTYASNGRYREAVMVFKKMEEE----GCKP-TLIT 245 (793)
Q Consensus 175 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~~ 245 (793)
.+......+...|++++|...|+.+.+.... + ..++..++..+...|++++|+..|++..+. +..+ ...+
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 4455566677778888888888877665433 3 356677777777888888888877776542 1111 2345
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHcCCC--------------------HHHHHH
Q 003829 246 YNVILNVYGKMGMPWNKIMALVEGMKSAGVK-PD----SYTFNTLISCCRRGSL--------------------HEEAAG 300 (793)
Q Consensus 246 ~~~ll~~~~~~g~~~~~a~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~~~--------------------~~~A~~ 300 (793)
+..+...+...| ++++|...+++..+.... .+ ..++..+...+...|+ +++|..
T Consensus 86 ~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 86 SGNLGNTLKVLG-NFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcc-CHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 566666666666 667776666665442110 11 2244445555555555 555555
Q ss_pred HHHHHHHC----CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC----CCC-ChhHHHHHHHHHHhcCCHHHHHH
Q 003829 301 VFEEMKLA----GFS-PDKVTYNALLDVYGKCRRPKEAMQVLREMKING----CLP-SIVTYNSLISAYARDGLLEEAME 370 (793)
Q Consensus 301 ~~~~~~~~----g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~~~-~~~~~~~li~~~~~~g~~~~A~~ 370 (793)
.+++.... +.. .....+..+...+...|++++|...+++..+.. ..+ ...++..+...+...|++++|.+
T Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 244 (338)
T 3ro2_A 165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 244 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 55544321 100 012244445555555555555555555543220 000 01144444555555555555555
Q ss_pred HHHHHH
Q 003829 371 LKTQMV 376 (793)
Q Consensus 371 ~~~~m~ 376 (793)
.+++..
T Consensus 245 ~~~~al 250 (338)
T 3ro2_A 245 YYKKTL 250 (338)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555443
No 67
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.43 E-value=9.4e-12 Score=129.61 Aligned_cols=236 Identities=7% Similarity=0.008 Sum_probs=176.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHhcC----CCCC-CHhhHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCC-C-CC
Q 003829 530 VLAALARGGMWEQSEKIFAEMKGG----RCKP-NELTYSSLLHAYANGREIDQMLALSEEIYSERAFLELKKKGF-S-PD 602 (793)
Q Consensus 530 l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~-~~ 602 (793)
....+...|++++|...+++.... +..+ ...++..+...|...|++++|+..+++.+. .....+. . ..
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~-----~~~~~~~~~~~~ 183 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYE-----IYKEHEAYNIRL 183 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----HHHTCSTTHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----HHHhCccchHHH
Confidence 445567788888888888888653 1111 235677788888889999999998887654 1112111 1 12
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHHC----CC-CCC
Q 003829 603 IPTLNAMISIYGRRQMVAKTNEILHFMNDSGF-TPS----LTTYNTLMYMYSRSENFARAEDVLREILAK----GI-KPD 672 (793)
Q Consensus 603 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~~~ 672 (793)
..++..++..|...|++++|...+++..+... ..+ ..++..+..+|...|++++|+..+++..+. +. +..
T Consensus 184 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 263 (383)
T 3ulq_A 184 LQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSL 263 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhH
Confidence 45788899999999999999999998875310 112 246888999999999999999999999872 22 333
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC---CCC-HHHHHHHHHHHHhcCC---hHHHHHHHHHHHHcCCCCC-HH
Q 003829 673 IISYNTVIFAYCRNGRMKEASRIFSEMRDSGL---VPD-VITYNTFVASYAADSL---FVEALDVVRYMIKQGCKPN-QN 744 (793)
Q Consensus 673 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~-~~ 744 (793)
..++..++.+|...|++++|.++++++.+... .|. ...+..+...|...|+ +++|+.++++. +..++ ..
T Consensus 264 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~ 340 (383)
T 3ulq_A 264 PQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLED 340 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHH
Confidence 67889999999999999999999999987210 121 2346778888999999 77788877775 23333 56
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhCC
Q 003829 745 TYNSIVDGYCKLNQRYEAITFVNNLSKLD 773 (793)
Q Consensus 745 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 773 (793)
.+..++..|.+.|++++|..+++++++..
T Consensus 341 ~~~~la~~y~~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 341 FAIDVAKYYHERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 78899999999999999999999998764
No 68
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.43 E-value=7.1e-12 Score=133.78 Aligned_cols=213 Identities=8% Similarity=-0.042 Sum_probs=166.1
Q ss_pred hHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHcCCCH-HHHHHHHHHHHhHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 003829 540 WEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREI-DQMLALSEEIYSERAFLELKKKGFSPDIPTLNAMISIYGRRQM 618 (793)
Q Consensus 540 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 618 (793)
++++...+++..... +.+...+..+..++...|++ ++|+..+++++.. .+.+...+..+...|...|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~----------~p~~~~a~~~lg~~~~~~g~ 152 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL----------EPELVEAWNQLGEVYWKKGD 152 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH----------CTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh----------CCCCHHHHHHHHHHHHHcCC
Confidence 455566666655432 33666777777777778888 8888877765531 13356788888888888899
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc---------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc---
Q 003829 619 VAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRS---------ENFARAEDVLREILAKGIKPDIISYNTVIFAYCRN--- 686 (793)
Q Consensus 619 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--- 686 (793)
+++|...|++..+.. |+...+..+..+|... |++++|+..++++++.. +.+...|..++.+|...
T Consensus 153 ~~~A~~~~~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~ 229 (474)
T 4abn_A 153 VTSAHTCFSGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFN 229 (474)
T ss_dssp HHHHHHHHHHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHh
Confidence 999999998888764 6678888888888888 99999999999998863 34578888899999888
Q ss_pred -----CCHHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 003829 687 -----GRMKEASRIFSEMRDSGLVP----DVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLN 757 (793)
Q Consensus 687 -----g~~~~A~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 757 (793)
|++++|.+.|+++++ ..| +...|..++.+|...|++++|++.++++++.. +.+...+..+..++...|
T Consensus 230 ~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg 306 (474)
T 4abn_A 230 TGQNPKISQQALSAYAQAEK--VDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLS 306 (474)
T ss_dssp TTCCHHHHHHHHHHHHHHHH--HCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred hccccchHHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHH
Confidence 889999999999998 444 67888999999999999999999999998752 224778888899999999
Q ss_pred CHHHHHHHHHHH
Q 003829 758 QRYEAITFVNNL 769 (793)
Q Consensus 758 ~~~~A~~~~~~~ 769 (793)
++++|++.+.++
T Consensus 307 ~~~eAi~~~~~~ 318 (474)
T 4abn_A 307 RLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHTTTC
T ss_pred HHHHHHHHhccc
Confidence 999888765443
No 69
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.42 E-value=1.7e-12 Score=130.86 Aligned_cols=248 Identities=13% Similarity=0.112 Sum_probs=159.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhcC-------CCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHC
Q 003829 525 STYNAVLAALARGGMWEQSEKIFAEMKGG-------RCKPNELTYSSLLHAYANGREIDQMLALSEEIYSERAFLELKKK 597 (793)
Q Consensus 525 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 597 (793)
.++..+...+...|++++|..+++++.+. .......++..+...+...|++++|...+++++.. +......
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~~~~~~~ 105 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAI--REKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHHCT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--HHHHhCC
Confidence 44555555566666666666666655541 11223445666666777777777777777765531 1111111
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC---
Q 003829 598 GFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDS------GF-TPSLTTYNTLMYMYSRSENFARAEDVLREILAK--- 667 (793)
Q Consensus 598 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--- 667 (793)
..+....++..+...+...|++++|...++++.+. +. +.....+..+...+...|++++|+.+++++.+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 11223567888999999999999999999998864 11 223456788899999999999999999999864
Q ss_pred ---CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-------CCCCCH-------HHHHHHHHHHHhcCChHHHHH
Q 003829 668 ---GIKPD-IISYNTVIFAYCRNGRMKEASRIFSEMRDS-------GLVPDV-------ITYNTFVASYAADSLFVEALD 729 (793)
Q Consensus 668 ---~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~p~~-------~~~~~l~~~~~~~g~~~~A~~ 729 (793)
+..|+ ..++..++.+|...|++++|.++++++.+. ...+.. ..+..+...+...+.+.+|..
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 265 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGG 265 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 11222 457888999999999999999999999862 111111 223344445556667777788
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCC
Q 003829 730 VVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPH 775 (793)
Q Consensus 730 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 775 (793)
.++...... +.+..++..++.+|.+.|++++|..+++++++..|+
T Consensus 266 ~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 266 WYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp --------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 888876531 224778899999999999999999999999987664
No 70
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.40 E-value=2.5e-10 Score=114.53 Aligned_cols=218 Identities=10% Similarity=0.012 Sum_probs=127.8
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH-------cCCH-------HHHHHHHHHHHH-cCCCCCHHHHHHHHHHHH
Q 003829 190 SVAASLLHGLHKDGFDIDVYAYTSLITTYAS-------NGRY-------REAVMVFKKMEE-EGCKPTLITYNVILNVYG 254 (793)
Q Consensus 190 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~-------~~A~~~~~~~~~-~~~~p~~~~~~~ll~~~~ 254 (793)
++|...|++++...+. +..+|..++..+.. .|++ ++|+.+|++..+ .. +-+...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~p~-~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~-p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGH-HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL-KKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTT-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 5677777777665333 67777777776653 3664 677777777776 22 224556777777777
Q ss_pred hcCCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCChHH
Q 003829 255 KMGMPWNKIMALVEGMKSAGVKPDSY-TFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYG-KCRRPKE 332 (793)
Q Consensus 255 ~~g~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~-~~g~~~~ 332 (793)
+.| ++++|..+|+++.+..+. +.. +|..++..+.+.|++++|..+|++..+.+ +.+...|...+.... ..|++++
T Consensus 111 ~~~-~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 111 SRM-KYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp HTT-CHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHH
T ss_pred hcC-CHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHH
Confidence 777 677777777777664322 222 56666666666667777777776666553 123333333322221 2466666
Q ss_pred HHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003829 333 AMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIG-ITP--DVFTYTTLLSGFEKAGKDESAMKVFEE 409 (793)
Q Consensus 333 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~ 409 (793)
|..+|++..+. .+.+...|..++..+.+.|++++|..+|++..... +.| ....|..++..+.+.|+.+.|..++++
T Consensus 188 A~~~~~~al~~-~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 188 AFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHh-CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 66666666554 22245566666666666666666666666666542 233 344555555555566666666666666
Q ss_pred HHHC
Q 003829 410 MRSA 413 (793)
Q Consensus 410 ~~~~ 413 (793)
+.+.
T Consensus 267 a~~~ 270 (308)
T 2ond_A 267 RFTA 270 (308)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 71
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.40 E-value=1.7e-11 Score=112.68 Aligned_cols=172 Identities=12% Similarity=0.108 Sum_probs=150.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003829 603 IPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFA 682 (793)
Q Consensus 603 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 682 (793)
...+..++..+...|++++|...++++.+.. +.+...+..++..+...|++++|...++++.+.. +.+...+..++..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 85 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 3456777888999999999999999998764 5678889999999999999999999999999863 4467889999999
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHH
Q 003829 683 YCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEA 762 (793)
Q Consensus 683 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 762 (793)
+...|++++|.++++++.+... .+...+..++.++...|++++|++.++++++.. +.+...+..++..+...|++++|
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEANP-INFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCc-HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999999998432 256888999999999999999999999999863 34588899999999999999999
Q ss_pred HHHHHHHhhCCCCCCH
Q 003829 763 ITFVNNLSKLDPHVTK 778 (793)
Q Consensus 763 ~~~~~~~~~~~~~~~~ 778 (793)
..+++++++..|+++.
T Consensus 164 ~~~~~~~~~~~~~~~~ 179 (186)
T 3as5_A 164 LPHFKKANELDEGASV 179 (186)
T ss_dssp HHHHHHHHHHHHCCCG
T ss_pred HHHHHHHHHcCCCchh
Confidence 9999999999887653
No 72
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.40 E-value=7.7e-11 Score=108.15 Aligned_cols=167 Identities=16% Similarity=0.130 Sum_probs=103.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003829 207 DVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLI 286 (793)
Q Consensus 207 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 286 (793)
+..+|..++.+|...|++++|+..|++..+..+ -+..+|..+...|.+.| ++++|+..++........ +...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~-~~~~a~~~~~~~~~~~~~-~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADP-NNVETLLKLGKTYMDIG-LPNDAIESLKKFVVLDTT-SAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCCC-CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhcCch-hHHHHHHHH
Confidence 455666666666666666666666666666542 25556666666666666 666666666666554333 444555555
Q ss_pred HHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHH
Q 003829 287 SCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLE 366 (793)
Q Consensus 287 ~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 366 (793)
..+...++++.|...+.+..... +.+...+..+..+|.+.|++++|++.|++..+. .+.+..+|..+..+|.+.|+++
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISI-KPGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHh-cchhhhHHHHHHHHHHHCCCHH
Confidence 55666666666666666666552 234556666666666777777777777666654 2235556666666777777777
Q ss_pred HHHHHHHHHHHc
Q 003829 367 EAMELKTQMVEI 378 (793)
Q Consensus 367 ~A~~~~~~m~~~ 378 (793)
+|++.|++.++.
T Consensus 159 ~A~~~~~~al~~ 170 (184)
T 3vtx_A 159 EAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC
Confidence 777777666654
No 73
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.38 E-value=2.1e-11 Score=130.18 Aligned_cols=215 Identities=11% Similarity=-0.001 Sum_probs=126.4
Q ss_pred hHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHH
Q 003829 189 VSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRY-REAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALV 267 (793)
Q Consensus 189 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~~a~~~~ 267 (793)
++++...++....... .+...+..+..++...|++ ++|+..|++..+.. +.+..+|..+...|.+.| ++++|++.|
T Consensus 84 ~~~al~~l~~~~~~~~-~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g-~~~~A~~~~ 160 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQ-VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKG-DVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHTTCC-CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT-CHHHHHHHH
T ss_pred HHHHHHHHHHHhccCc-hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcC-CHHHHHHHH
Confidence 4445555554443322 2555555666666666666 66666666655543 124555666666666666 566666666
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHcC---------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--------CCh
Q 003829 268 EGMKSAGVKPDSYTFNTLISCCRRG---------SLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKC--------RRP 330 (793)
Q Consensus 268 ~~~~~~~~~p~~~~~~~l~~~~~~~---------~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~--------g~~ 330 (793)
++..+.. |+...+..+...+... |++++|...+++..+.. +.+...|..+..+|... |++
T Consensus 161 ~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 161 SGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 6655543 3445555555555555 66666666666666653 22455666666666666 667
Q ss_pred HHHHHHHHHHHHcCCC--CChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003829 331 KEAMQVLREMKINGCL--PSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFE 408 (793)
Q Consensus 331 ~~A~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 408 (793)
++|+..|++..+.... .+...|..+..+|...|++++|++.|++..+.. +.+...+..+...+...|++++|.+.+.
T Consensus 238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7777777776654210 255566667777777777777777777766653 3345556666666666677777666554
Q ss_pred HH
Q 003829 409 EM 410 (793)
Q Consensus 409 ~~ 410 (793)
.+
T Consensus 317 ~~ 318 (474)
T 4abn_A 317 KT 318 (474)
T ss_dssp TC
T ss_pred cc
Confidence 44
No 74
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.38 E-value=7.9e-11 Score=122.58 Aligned_cols=234 Identities=8% Similarity=0.013 Sum_probs=127.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcC--CC----CCHHHHH
Q 003829 425 LIKMHGNRGNFVEMMKVFDEINKC----NCKP-DIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAG--FI----PERDTFN 493 (793)
Q Consensus 425 l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~--~~----~~~~~~~ 493 (793)
....+...|++++|.+.+++.... +..+ ...++..+...|...|++++|...+.+..+.. .. ....++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 334444555555555555555432 1001 12445555556666666666666665554421 10 0124667
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCChHHHHHHHHHHhcC----CC-CCCHhhHH
Q 003829 494 TLISAYSRCGSFDQAMSIYKRMLEAGVT-PD----LSTYNAVLAALARGGMWEQSEKIFAEMKGG----RC-KPNELTYS 563 (793)
Q Consensus 494 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~p~~~~~~ 563 (793)
.+...|...|++++|.+.+++..+.... .+ ..++..+...|...|++++|...+++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 7777788888888888888777643110 11 236777788888888999888888887651 22 22455677
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCCHHH
Q 003829 564 SLLHAYANGREIDQMLALSEEIYSERAFLELKKKGFSPDIPTLNAMISIYGRRQM---VAKTNEILHFMNDSGFTPSLTT 640 (793)
Q Consensus 564 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~ 640 (793)
.+...+...|++++|...+++.+.. ....+.+.....+..+...+...|+ +++|+.++++... .+.....
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~-----~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~--~~~~~~~ 341 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAY-----SQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKML--YADLEDF 341 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH-----HHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTC--HHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHH-----HHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcC--HHHHHHH
Confidence 8888888999999999888776531 1111111111223444455555555 4444444443310 0111223
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHH
Q 003829 641 YNTLMYMYSRSENFARAEDVLREIL 665 (793)
Q Consensus 641 ~~~l~~~~~~~g~~~~A~~~~~~~~ 665 (793)
+..+...|...|++++|...+++..
T Consensus 342 ~~~la~~y~~~g~~~~A~~~~~~al 366 (383)
T 3ulq_A 342 AIDVAKYYHERKNFQKASAYFLKVE 366 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3444444555555555555555444
No 75
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.37 E-value=8.8e-12 Score=138.14 Aligned_cols=167 Identities=10% Similarity=0.067 Sum_probs=151.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003829 602 DIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIF 681 (793)
Q Consensus 602 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 681 (793)
+...|+.+...|.+.|++++|++.|++.++.. +.+..+|..+..+|.+.|++++|+..|+++++.. +-+...|..++.
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 46789999999999999999999999999875 6678899999999999999999999999999863 335789999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCH
Q 003829 682 AYCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPN-QNTYNSIVDGYCKLNQR 759 (793)
Q Consensus 682 ~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~ 759 (793)
+|...|++++|++.|+++++ +.| +...|..++.+|...|++++|++.|+++++. .|+ ...+..++.+|...|++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~--l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--~P~~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQ--INPAFADAHSNLASIHKDSGNIPEAIASYRTALKL--KPDFPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHhhhhhHHHhcccH
Confidence 99999999999999999999 555 4689999999999999999999999999984 565 88999999999999999
Q ss_pred HHHHHHHHHHhhCCC
Q 003829 760 YEAITFVNNLSKLDP 774 (793)
Q Consensus 760 ~~A~~~~~~~~~~~~ 774 (793)
++|.+.++++++..|
T Consensus 162 ~~A~~~~~kal~l~~ 176 (723)
T 4gyw_A 162 TDYDERMKKLVSIVA 176 (723)
T ss_dssp TTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCh
Confidence 999999999887643
No 76
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.37 E-value=3.9e-11 Score=114.58 Aligned_cols=173 Identities=13% Similarity=0.019 Sum_probs=150.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003829 601 PDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVI 680 (793)
Q Consensus 601 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 680 (793)
.+...+...+..+...|++++|...|++..+...+++...+..+..++...|++++|+..+++.++.. +.+...|..++
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 45678888999999999999999999999987633788888889999999999999999999999863 33577899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCC-CH-------HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC---HHHHHHH
Q 003829 681 FAYCRNGRMKEASRIFSEMRDSGLVP-DV-------ITYNTFVASYAADSLFVEALDVVRYMIKQGCKPN---QNTYNSI 749 (793)
Q Consensus 681 ~~~~~~g~~~~A~~~~~~~~~~~~~p-~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l 749 (793)
.+|...|++++|...++++++ ..| +. ..|..++..+...|++++|++.++++++. .|+ ...|..+
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l 159 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIK--AVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSL 159 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHH
Confidence 999999999999999999998 444 34 45888999999999999999999999874 554 5778889
Q ss_pred HHHHHccCCH---------------------------HHHHHHHHHHhhCCCCCCH
Q 003829 750 VDGYCKLNQR---------------------------YEAITFVNNLSKLDPHVTK 778 (793)
Q Consensus 750 ~~~~~~~g~~---------------------------~~A~~~~~~~~~~~~~~~~ 778 (793)
+.+|...|+. ++|+..++++++.+|++..
T Consensus 160 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~ 215 (228)
T 4i17_A 160 GVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNRTE 215 (228)
T ss_dssp HHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHH
Confidence 9999988888 9999999999999998654
No 77
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.33 E-value=2.4e-10 Score=118.57 Aligned_cols=234 Identities=11% Similarity=-0.018 Sum_probs=174.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHhcCCC-CC----CHhhHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCC-CC-C
Q 003829 530 VLAALARGGMWEQSEKIFAEMKGGRC-KP----NELTYSSLLHAYANGREIDQMLALSEEIYSERAFLELKKKGF-SP-D 602 (793)
Q Consensus 530 l~~~~~~~g~~~~A~~~~~~~~~~~~-~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~-~ 602 (793)
....+...|++++|...|++...... .+ ...++..+...|...|+++.|+..+++.+. .....+. .+ .
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~-----~~~~~~~~~~~~ 181 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALD-----IYQNHPLYSIRT 181 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----HHHTSTTCHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH-----HHHhCCCchhhH
Confidence 34456778999999999988875311 12 234677788888899999999999887654 1112111 11 2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHccCCHHHHHHHHHHHHH-----CCCCCC
Q 003829 603 IPTLNAMISIYGRRQMVAKTNEILHFMNDS----GFT-PSLTTYNTLMYMYSRSENFARAEDVLREILA-----KGIKPD 672 (793)
Q Consensus 603 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~ 672 (793)
..+++.++..|...|++++|.+.+++..+. +.. ....++..+..+|...|++++|+..+++... .. +..
T Consensus 182 ~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~ 260 (378)
T 3q15_A 182 IQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLL 260 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhH
Confidence 457888999999999999999999988763 111 1234678899999999999999999999987 42 223
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC---CCC-HHHHHHHHHHHHhcCC---hHHHHHHHHHHHHcCCCCC-HH
Q 003829 673 IISYNTVIFAYCRNGRMKEASRIFSEMRDSGL---VPD-VITYNTFVASYAADSL---FVEALDVVRYMIKQGCKPN-QN 744 (793)
Q Consensus 673 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~-~~ 744 (793)
..++..++.+|.+.|++++|..++++..+... .+. ...+..+...|...|+ +++|+.++++. +..++ ..
T Consensus 261 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~ 337 (378)
T 3q15_A 261 PKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEA 337 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHH
Confidence 67888999999999999999999999997311 222 2456777777878888 77888877763 23333 55
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhC
Q 003829 745 TYNSIVDGYCKLNQRYEAITFVNNLSKL 772 (793)
Q Consensus 745 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 772 (793)
.+..++..|.+.|++++|..+++++++.
T Consensus 338 ~~~~la~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 338 CARSAAAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 6778999999999999999999999865
No 78
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.31 E-value=9.5e-11 Score=118.01 Aligned_cols=244 Identities=17% Similarity=0.130 Sum_probs=159.1
Q ss_pred CccchHHHHHHHHHHHHhcCChHHHHHHHHHHhhC-------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---
Q 003829 168 NLVLRGSVIAVLISMLGKEGKVSVAASLLHGLHKD-------GFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEE--- 237 (793)
Q Consensus 168 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--- 237 (793)
..+....++..+...+...|++++|..+++.+.+. .......++..+..+|...|++++|+..|+++.+.
T Consensus 22 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 101 (311)
T 3nf1_A 22 EIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREK 101 (311)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 33446677788888888888888888888877652 22334567888888888888888888888888754
Q ss_pred ---CCCC-CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC------CCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 003829 238 ---GCKP-TLITYNVILNVYGKMGMPWNKIMALVEGMKSA------GVKP-DSYTFNTLISCCRRGSLHEEAAGVFEEMK 306 (793)
Q Consensus 238 ---~~~p-~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~------~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 306 (793)
+-.| ...++..+...|...| ++++|...++++.+. +..| ...++..+...+...|++++|..+++++.
T Consensus 102 ~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 180 (311)
T 3nf1_A 102 TLGKDHPAVAATLNNLAVLYGKRG-KYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRAL 180 (311)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HhCCCChHHHHHHHHHHHHHHHcC-cHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 2122 3457778888888888 888888888887764 2222 24467777778888899999998888887
Q ss_pred HC------CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-------CCCCCh-hH------HHHHHHHHHhcCCH
Q 003829 307 LA------GFSP-DKVTYNALLDVYGKCRRPKEAMQVLREMKIN-------GCLPSI-VT------YNSLISAYARDGLL 365 (793)
Q Consensus 307 ~~------g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~-~~------~~~li~~~~~~g~~ 365 (793)
.. +..| ...++..+..+|.+.|++++|.+.++++.+. ...+.. .. +..+...+...+.+
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (311)
T 3nf1_A 181 EIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSF 260 (311)
T ss_dssp HHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCS
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHH
Confidence 64 2122 3456778888888999999999998887652 111111 11 22223333344555
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 003829 366 EEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSA 413 (793)
Q Consensus 366 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 413 (793)
.+|...++...... +.+..++..+...|.+.|++++|.+.+++..+.
T Consensus 261 ~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 261 GEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp CCCC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 55666666655432 334567888888899999999999999887653
No 79
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.31 E-value=9.6e-10 Score=113.90 Aligned_cols=273 Identities=9% Similarity=-0.014 Sum_probs=183.1
Q ss_pred HHHhccCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCChHHHHHHHHHHhcCCC-CCC----HhhHHHHHH
Q 003829 497 SAYSRCGSFDQAMSIYKRMLEAGVTPDLS----TYNAVLAALARGGMWEQSEKIFAEMKGGRC-KPN----ELTYSSLLH 567 (793)
Q Consensus 497 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~----~~~~~~l~~ 567 (793)
..+...|++++|...+++........+.. .+..+...+...|++++|...+++...... ..+ ..++..+..
T Consensus 22 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 101 (373)
T 1hz4_A 22 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 101 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 34445566666666666655543222221 344455566667777777777766543210 111 123455666
Q ss_pred HHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC----CCHHH
Q 003829 568 AYANGREIDQMLALSEEIYSERAFLELKKKGFS--P-DIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFT----PSLTT 640 (793)
Q Consensus 568 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~ 640 (793)
.+...|++++|...+++.+. .....+.. | ....+..+...+...|++++|...+++..+.... ....+
T Consensus 102 ~~~~~G~~~~A~~~~~~al~-----~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 102 ILFAQGFLQTAWETQEKAFQ-----LINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHH-----HHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH-----HHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 77788899999888887654 22233332 2 2346677888999999999999999998764211 12456
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-HHHHH-----HHHHHHHHcCCHHHHHHHHHHHHHCCCCC---CHHHH
Q 003829 641 YNTLMYMYSRSENFARAEDVLREILAKGIKPD-IISYN-----TVIFAYCRNGRMKEASRIFSEMRDSGLVP---DVITY 711 (793)
Q Consensus 641 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~~ 711 (793)
+..+...+...|++++|...+++.....-.++ ...+. ..+..+...|++++|..++++..+....+ ....+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 77888899999999999999999875411111 11222 23345779999999999999987643221 12356
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHhhCCC
Q 003829 712 NTFVASYAADSLFVEALDVVRYMIKQ----GCKPN-QNTYNSIVDGYCKLNQRYEAITFVNNLSKLDP 774 (793)
Q Consensus 712 ~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 774 (793)
..++..+...|++++|...++++.+. |..++ ...+..++.++...|+.++|...++++++..+
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~ 324 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN 324 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc
Confidence 78889999999999999999998642 21222 23677788889999999999999999887643
No 80
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.31 E-value=1.4e-09 Score=112.68 Aligned_cols=271 Identities=11% Similarity=-0.028 Sum_probs=142.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCCH----HH
Q 003829 175 VIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVY----AYTSLITTYASNGRYREAVMVFKKMEEEGC-KPTL----IT 245 (793)
Q Consensus 175 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~----~~ 245 (793)
+.......+...|++++|...++.........+.. +++.+...+...|++++|...+++..+... ..+. .+
T Consensus 16 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 95 (373)
T 1hz4_A 16 FNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWS 95 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 44455566667888888888888877654333332 466677778888888888888888765311 1121 23
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHhC----CCC--CC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC----CCH
Q 003829 246 YNVILNVYGKMGMPWNKIMALVEGMKSA----GVK--PD-SYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFS----PDK 314 (793)
Q Consensus 246 ~~~ll~~~~~~g~~~~~a~~~~~~~~~~----~~~--p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~----~~~ 314 (793)
+..+...+...| ++++|...+++..+. +.. |. ...+..+...+...|++++|..++++....... ...
T Consensus 96 ~~~la~~~~~~G-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 174 (373)
T 1hz4_A 96 LIQQSEILFAQG-FLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQL 174 (373)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGH
T ss_pred HHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHH
Confidence 455666666677 677777777766542 111 11 223444555566666666666666665543211 012
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-hHHH-----HHHHHHHhcCCHHHHHHHHHHHHHcCCCC---CHH
Q 003829 315 VTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSI-VTYN-----SLISAYARDGLLEEAMELKTQMVEIGITP---DVF 385 (793)
Q Consensus 315 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~-----~li~~~~~~g~~~~A~~~~~~m~~~g~~~---~~~ 385 (793)
.++..+...+...|++++|...+++.......++. ..+. ..+..+...|++++|...+++.......+ ...
T Consensus 175 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 254 (373)
T 1hz4_A 175 QCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQG 254 (373)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHH
Confidence 34555566666666666666666665432111110 1111 12233556666666666665554332111 012
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003829 386 TYTTLLSGFEKAGKDESAMKVFEEMRSA----GCKPNI-CTFNALIKMHGNRGNFVEMMKVFDEIN 446 (793)
Q Consensus 386 ~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~ 446 (793)
.+..+...+...|++++|...+++.... |...+. .++..+...+...|+.++|...+++..
T Consensus 255 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 255 QWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 320 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3344455555566666666655554321 111111 133444444555555555555555443
No 81
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.28 E-value=3.6e-11 Score=119.20 Aligned_cols=201 Identities=13% Similarity=0.162 Sum_probs=155.6
Q ss_pred HcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------C-CCCCHHHHH
Q 003829 570 ANGREIDQMLALSEEIYSERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDS------G-FTPSLTTYN 642 (793)
Q Consensus 570 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~-~~~~~~~~~ 642 (793)
...|++++|+.++++.+. .+........+....++..+...|...|++++|...++++.+. + .+....++.
T Consensus 12 ~~~~~~~~A~~~~~~al~--~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 89 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALE--DLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLN 89 (283)
T ss_dssp -CCSCSSSHHHHHHHHHH--HHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH--HHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHH
Confidence 456777888888877654 2222222222334668889999999999999999999998864 1 123455788
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHC------CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC------CCCCC-H
Q 003829 643 TLMYMYSRSENFARAEDVLREILAK------GI-KPDIISYNTVIFAYCRNGRMKEASRIFSEMRDS------GLVPD-V 708 (793)
Q Consensus 643 ~l~~~~~~~g~~~~A~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~p~-~ 708 (793)
.+..+|...|++++|+..++++... .- +....++..++.+|...|++++|..+++++++. +..|+ .
T Consensus 90 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 169 (283)
T 3edt_B 90 NLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVA 169 (283)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 8999999999999999999999864 11 223567889999999999999999999999873 11332 3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcC-----------------------------------------------CCC
Q 003829 709 ITYNTFVASYAADSLFVEALDVVRYMIKQG-----------------------------------------------CKP 741 (793)
Q Consensus 709 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----------------------------------------------~~p 741 (793)
.++..++.+|...|++++|+.+++++++.. ..|
T Consensus 170 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (283)
T 3edt_B 170 KTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSP 249 (283)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCH
Confidence 678999999999999999999999988630 112
Q ss_pred C-HHHHHHHHHHHHccCCHHHHHHHHHHHhhC
Q 003829 742 N-QNTYNSIVDGYCKLNQRYEAITFVNNLSKL 772 (793)
Q Consensus 742 ~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 772 (793)
+ ..++..++.+|.+.|++++|..+++++++.
T Consensus 250 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 250 TVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 2 557888999999999999999999999875
No 82
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.25 E-value=8.7e-10 Score=114.35 Aligned_cols=159 Identities=11% Similarity=0.036 Sum_probs=93.7
Q ss_pred HHHcCCCHHHHHHHHHHHHHCCC-CC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC--C---CC-ChhHHHHHH
Q 003829 288 CCRRGSLHEEAAGVFEEMKLAGF-SP----DKVTYNALLDVYGKCRRPKEAMQVLREMKING--C---LP-SIVTYNSLI 356 (793)
Q Consensus 288 ~~~~~~~~~~A~~~~~~~~~~g~-~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~---~~-~~~~~~~li 356 (793)
.+...|++++|...|++..+... .+ ...++..+...|...|++++|...+++..+.. . .+ ...+++.+.
T Consensus 110 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 189 (378)
T 3q15_A 110 YEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIA 189 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHH
Confidence 45567777777777777765310 01 23456667777777777777777777665421 0 11 133566677
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCHHHHHHHH
Q 003829 357 SAYARDGLLEEAMELKTQMVEI----GITP-DVFTYTTLLSGFEKAGKDESAMKVFEEMRS-----AGCKPNICTFNALI 426 (793)
Q Consensus 357 ~~~~~~g~~~~A~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~~l~ 426 (793)
..|...|++++|.+.+++..+. +..+ ...++..+...|...|++++|...+++..+ .. +....++..+.
T Consensus 190 ~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~la 268 (378)
T 3q15_A 190 GNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLFGLS 268 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHHHH
Confidence 7777777777777777766542 1000 123455566666666777777766666654 22 22245556666
Q ss_pred HHHHhcCCHHHHHHHHHHHHh
Q 003829 427 KMHGNRGNFVEMMKVFDEINK 447 (793)
Q Consensus 427 ~~~~~~g~~~~A~~~~~~~~~ 447 (793)
..|.+.|++++|.+.+++...
T Consensus 269 ~~~~~~g~~~~A~~~~~~al~ 289 (378)
T 3q15_A 269 WTLCKAGQTQKAFQFIEEGLD 289 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 666666666666666666544
No 83
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.22 E-value=3.1e-10 Score=112.73 Aligned_cols=202 Identities=15% Similarity=0.022 Sum_probs=135.3
Q ss_pred HHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----HHHH
Q 003829 568 AYANGREIDQMLALSEEIYSERAFLELKKKGFSPD-IPTLNAMISIYGRRQMVAKTNEILHFMNDSGFT-PS----LTTY 641 (793)
Q Consensus 568 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~ 641 (793)
.|...|++++|+..+++.+.. ....+..+. ..+|+.+..+|...|++++|+..+++..+.... .+ ..++
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~-----~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~ 120 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADY-----QKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFK 120 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHH-----HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH-----HHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 344555556555555554321 111221111 346667777777777777777777776643100 11 3467
Q ss_pred HHHHHHHHcc-CCHHHHHHHHHHHHHCCCCC-C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH------H
Q 003829 642 NTLMYMYSRS-ENFARAEDVLREILAKGIKP-D----IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDV------I 709 (793)
Q Consensus 642 ~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~------~ 709 (793)
+.+..+|... |++++|+..|++.++..... + ..++..++..|...|++++|..+|+++.+....... .
T Consensus 121 ~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 200 (292)
T 1qqe_A 121 FELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKD 200 (292)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHH
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHH
Confidence 7888889886 99999999999988641100 1 356888899999999999999999999984332211 2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHH--ccCCHHHHHHHHHHHhhCCCCC
Q 003829 710 TYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQ------NTYNSIVDGYC--KLNQRYEAITFVNNLSKLDPHV 776 (793)
Q Consensus 710 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~------~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~~~~ 776 (793)
.|..++.++...|++++|+..+++.++ +.|+. ..+..++.++. ..+++++|+..++++.+.+|..
T Consensus 201 ~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~ 273 (292)
T 1qqe_A 201 YFLKKGLCQLAATDAVAAARTLQEGQS--EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWK 273 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHGGGC--C---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHH
Confidence 577888899999999999999999876 34431 13445566664 5578999999999998888764
No 84
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.21 E-value=7.3e-10 Score=122.81 Aligned_cols=167 Identities=12% Similarity=0.043 Sum_probs=130.0
Q ss_pred chHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003829 171 LRGSVIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVIL 250 (793)
Q Consensus 171 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll 250 (793)
.+..++..+..++.+.|++++|++.|+++++..+. +..++..+..+|.+.|++++|+..|++..+..+ -+..+|..+.
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P-~~~~a~~nLg 84 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRISP-TFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHH
Confidence 36677888888888888888888888888776554 677888888888888888888888888887642 2677888888
Q ss_pred HHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 003829 251 NVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRP 330 (793)
Q Consensus 251 ~~~~~~g~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 330 (793)
.+|.+.| ++++|++.|++..+.... +..+|..+..+|.+.|++++|+..|++..+.. +-+...|..+..+|...|++
T Consensus 85 ~~l~~~g-~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 85 NTLKEMQ-DVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHHTT-CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHcC-CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccH
Confidence 8888888 788888888888776543 56778888888888888888888888887763 22566777888888888888
Q ss_pred HHHHHHHHHHHH
Q 003829 331 KEAMQVLREMKI 342 (793)
Q Consensus 331 ~~A~~~~~~~~~ 342 (793)
++|.+.+++..+
T Consensus 162 ~~A~~~~~kal~ 173 (723)
T 4gyw_A 162 TDYDERMKKLVS 173 (723)
T ss_dssp TTHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888777776643
No 85
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.20 E-value=2e-09 Score=98.59 Aligned_cols=165 Identities=15% Similarity=0.058 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003829 173 GSVIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNV 252 (793)
Q Consensus 173 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~ 252 (793)
...+..+...+...|++++|...++.+.+..+. +..++..++.++...|++++|...|+++.+.. +.+...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 85 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAF-DVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 345556666667777777777777776655333 56667777777777777777777777776653 2355566666666
Q ss_pred HHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 003829 253 YGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKE 332 (793)
Q Consensus 253 ~~~~g~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 332 (793)
+...| ++++|.+.++++.+.... +...+..+...+...|++++|..+++++.+.. +.+...+..+...+.+.|++++
T Consensus 86 ~~~~~-~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 162 (186)
T 3as5_A 86 YVQVQ-KYDLAVPLLIKVAEANPI-NFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEE 162 (186)
T ss_dssp HHHHT-CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhc-CHHHHHHHHHHHHhcCcH-hHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHH
Confidence 66666 666666666666554322 34445555555555555555555555555442 2234445555555555555555
Q ss_pred HHHHHHHHHH
Q 003829 333 AMQVLREMKI 342 (793)
Q Consensus 333 A~~~~~~~~~ 342 (793)
|...+++..+
T Consensus 163 A~~~~~~~~~ 172 (186)
T 3as5_A 163 ALPHFKKANE 172 (186)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555433
No 86
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.20 E-value=3.5e-10 Score=105.86 Aligned_cols=168 Identities=11% Similarity=0.010 Sum_probs=132.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH----------------HHHHHHccCCHHHHHHHHHHHHHCC
Q 003829 605 TLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNT----------------LMYMYSRSENFARAEDVLREILAKG 668 (793)
Q Consensus 605 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~g~~~~A~~~~~~~~~~~ 668 (793)
.+...+..+...|++++|...|++..+.. +.+...|.. +..+|.+.|++++|+..|++.++..
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 84 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIALN-IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA 84 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 34445566788999999999999998864 345566767 8999999999999999999999873
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCC--hHHHHHHHHHHHHcCCCCCHHH
Q 003829 669 IKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSL--FVEALDVVRYMIKQGCKPNQNT 745 (793)
Q Consensus 669 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~p~~~~ 745 (793)
+.+...|..++.+|...|++++|...|+++++ +.| +..++..++.+|...|+ .+.+...+++... ..|....
T Consensus 85 -p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a 159 (208)
T 3urz_A 85 -PNNVDCLEACAEMQVCRGQEKDALRMYEKILQ--LEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQYA 159 (208)
T ss_dssp -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHHH
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhHH
Confidence 34688999999999999999999999999999 555 56889999999877664 4455666666542 2233344
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCH
Q 003829 746 YNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTK 778 (793)
Q Consensus 746 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 778 (793)
+..++.++...|++++|+..++++++..|++..
T Consensus 160 ~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~ 192 (208)
T 3urz_A 160 RYRDGLSKLFTTRYEKARNSLQKVILRFPSTEA 192 (208)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHH
Confidence 556677788899999999999999999997543
No 87
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.18 E-value=2.1e-09 Score=104.85 Aligned_cols=175 Identities=10% Similarity=0.085 Sum_probs=145.0
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC-C-CCHH
Q 003829 600 SPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPS---LTTYNTLMYMYSRSENFARAEDVLREILAKGI-K-PDII 674 (793)
Q Consensus 600 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~-~~~~ 674 (793)
+.+...+..+...+.+.|++++|...|+++.+.. +.+ ...+..+..+|.+.|++++|+..|+++++... . ....
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 3456778888889999999999999999999864 334 67888899999999999999999999998621 1 1245
Q ss_pred HHHHHHHHHHH--------cCCHHHHHHHHHHHHHCCCCCCH-HHH-----------------HHHHHHHHhcCChHHHH
Q 003829 675 SYNTVIFAYCR--------NGRMKEASRIFSEMRDSGLVPDV-ITY-----------------NTFVASYAADSLFVEAL 728 (793)
Q Consensus 675 ~~~~l~~~~~~--------~g~~~~A~~~~~~~~~~~~~p~~-~~~-----------------~~l~~~~~~~g~~~~A~ 728 (793)
.+..++.++.. .|++++|...|+++++. .|+. ... ..++.+|...|++++|+
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 168 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAA 168 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHH
Confidence 77888889998 99999999999999983 3432 222 56788999999999999
Q ss_pred HHHHHHHHcCCCCC----HHHHHHHHHHHHcc----------CCHHHHHHHHHHHhhCCCCCCHH
Q 003829 729 DVVRYMIKQGCKPN----QNTYNSIVDGYCKL----------NQRYEAITFVNNLSKLDPHVTKE 779 (793)
Q Consensus 729 ~~~~~~~~~~~~p~----~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~ 779 (793)
..++++++.. |+ ...+..++.+|... |++++|+..++++++..|+++..
T Consensus 169 ~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 231 (261)
T 3qky_A 169 VTYEAVFDAY--PDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLL 231 (261)
T ss_dssp HHHHHHHHHC--TTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHH
T ss_pred HHHHHHHHHC--CCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHH
Confidence 9999999752 33 45788888888876 89999999999999999998754
No 88
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.17 E-value=1.6e-09 Score=93.21 Aligned_cols=133 Identities=15% Similarity=0.250 Sum_probs=109.4
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003829 640 TYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYA 719 (793)
Q Consensus 640 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 719 (793)
.+..++..+...|++++|..+++++.+.+ +.+...+..++..+...|++++|..+++++.+.+.. +...+..++..+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC-chHHHHHHHHHHH
Confidence 46677788888889999999999888763 345777888888888999999999999998874322 5677888889999
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCC
Q 003829 720 ADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPH 775 (793)
Q Consensus 720 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 775 (793)
..|++++|++.++++++.. +.+...+..++..+.+.|++++|...++++++.+|+
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 9999999999999988753 335778888999999999999999999999988875
No 89
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.16 E-value=4.8e-09 Score=99.92 Aligned_cols=192 Identities=8% Similarity=-0.013 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 003829 209 YAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISC 288 (793)
Q Consensus 209 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 288 (793)
..+..++..+...|++++|+..|++..+....++...+..+...+...| ++++|+..+++..+.... +..++..+..+
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~al~~~p~-~~~~~~~l~~~ 85 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIK-KYKEAADYFDIAIKKNYN-LANAYIGKSAA 85 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTTCS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhh-cHHHHHHHHHHHHHhCcc-hHHHHHHHHHH
Confidence 4444444444444444444444444444432234444444444444444 444444444444443222 23344444444
Q ss_pred HHcCCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC---hhHHHHHHHH
Q 003829 289 CRRGSLHEEAAGVFEEMKLAGFSPDK-------VTYNALLDVYGKCRRPKEAMQVLREMKINGCLPS---IVTYNSLISA 358 (793)
Q Consensus 289 ~~~~~~~~~A~~~~~~~~~~g~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~ 358 (793)
+...|++++|...+++..+.. +.+. ..|..+...+.+.|++++|++.|++..+. .|+ ...|..+..+
T Consensus 86 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 86 YRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGVL 162 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHHH
Confidence 444555555555555444431 1122 23444555555556666666666555442 222 2344445555
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 003829 359 YARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSA 413 (793)
Q Consensus 359 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 413 (793)
|...| ...++++...+ ..+...|.... ....+.+++|...+++..+.
T Consensus 163 ~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 163 FYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc
Confidence 44332 22233333332 11222232222 22234456666666666554
No 90
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.12 E-value=1.3e-09 Score=108.19 Aligned_cols=168 Identities=13% Similarity=0.043 Sum_probs=129.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC---CCC--HHHHHHH
Q 003829 610 ISIYGRRQMVAKTNEILHFMNDS----GFTPS-LTTYNTLMYMYSRSENFARAEDVLREILAKGI---KPD--IISYNTV 679 (793)
Q Consensus 610 ~~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~--~~~~~~l 679 (793)
+..|...|++++|.+.|.+..+. |-+++ ..+|+.+..+|...|++++|+..+++.++... .+. ..+++.+
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~l 123 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44577889999999999888753 31111 46788999999999999999999999886411 111 3578899
Q ss_pred HHHHHHc-CCHHHHHHHHHHHHHCCCCC---C----HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH------HH
Q 003829 680 IFAYCRN-GRMKEASRIFSEMRDSGLVP---D----VITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQ------NT 745 (793)
Q Consensus 680 ~~~~~~~-g~~~~A~~~~~~~~~~~~~p---~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~------~~ 745 (793)
+.+|... |++++|...|+++++ +.| + ..++..++..|...|++++|+..++++++....... ..
T Consensus 124 g~~~~~~lg~~~~A~~~~~~Al~--~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 201 (292)
T 1qqe_A 124 GEILENDLHDYAKAIDCYELAGE--WYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDY 201 (292)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHH--HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHH
T ss_pred HHHHHHhhcCHHHHHHHHHHHHH--HHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 9999996 999999999999987 222 1 356889999999999999999999999985322111 25
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHH
Q 003829 746 YNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKE 779 (793)
Q Consensus 746 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 779 (793)
|..++.++...|++++|+..++++++.+|+....
T Consensus 202 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 235 (292)
T 1qqe_A 202 FLKKGLCQLAATDAVAAARTLQEGQSEDPNFADS 235 (292)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHGGGCC-------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc
Confidence 7788889999999999999999999999876543
No 91
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.12 E-value=2.1e-08 Score=96.82 Aligned_cols=175 Identities=10% Similarity=-0.035 Sum_probs=130.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-----CH
Q 003829 600 SPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGF-TPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKP-----DI 673 (793)
Q Consensus 600 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~ 673 (793)
.++...+..+..++...|++++|++++.+.+..+. .-+...+..++..+.+.|+.+.|.+.+++|.+. .| +.
T Consensus 97 ~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~d~~~~~d 174 (310)
T 3mv2_B 97 QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IEDTVSGDN 174 (310)
T ss_dssp CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--Cccccccch
Confidence 45556666888888889999999999998876652 246777888899999999999999999999875 55 24
Q ss_pred HHHHHHHHH--HHHcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-----CC---CC
Q 003829 674 ISYNTVIFA--YCRNG--RMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQ-----GC---KP 741 (793)
Q Consensus 674 ~~~~~l~~~--~~~~g--~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~---~p 741 (793)
.+...++.+ ....| ++++|..+|+++.+ ..|+......+..++.+.|++++|.+.++.+.+. +. .|
T Consensus 175 ~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~--~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p 252 (310)
T 3mv2_B 175 EMILNLAESYIKFATNKETATSNFYYYEELSQ--TFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVL 252 (310)
T ss_dssp HHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHT--TSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHS
T ss_pred HHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH--hCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCC
Confidence 455555544 44445 89999999999877 4455333344444888999999999999977642 11 24
Q ss_pred -CHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHH
Q 003829 742 -NQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKEL 780 (793)
Q Consensus 742 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 780 (793)
|+.+...++......|+ +|.++++++.+..|+.+.+.
T Consensus 253 ~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~ 290 (310)
T 3mv2_B 253 YKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIK 290 (310)
T ss_dssp SHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHH
T ss_pred CCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHH
Confidence 47777566666666787 89999999999999977653
No 92
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.10 E-value=1.6e-09 Score=107.09 Aligned_cols=125 Identities=16% Similarity=0.118 Sum_probs=61.2
Q ss_pred CChHHHHHHHHHHHhccCC--CCCccchHHHHHHHHHHHHhcCChHHHHHHHHHHhhC------C-CCCCHHHHHHHHHH
Q 003829 147 KKTDLALDVFEWFRSCCSK--DGNLVLRGSVIAVLISMLGKEGKVSVAASLLHGLHKD------G-FDIDVYAYTSLITT 217 (793)
Q Consensus 147 ~~~~~A~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~-~~~~~~~~~~l~~~ 217 (793)
|+++.|+..|+........ ....+....++..+..++...|++++|...++.+... + .+....++..++.+
T Consensus 15 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~ 94 (283)
T 3edt_B 15 VPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVL 94 (283)
T ss_dssp SCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHH
Confidence 4555555555554331110 0122234555666666666666666666666655432 1 11123455666666
Q ss_pred HHHcCCHHHHHHHHHHHHHc-----CC-CC-CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 003829 218 YASNGRYREAVMVFKKMEEE-----GC-KP-TLITYNVILNVYGKMGMPWNKIMALVEGMKS 272 (793)
Q Consensus 218 ~~~~g~~~~A~~~~~~~~~~-----~~-~p-~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~ 272 (793)
|...|++++|+..|+++.+. +. .| ...++..+...|...| ++++|...++++.+
T Consensus 95 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~ 155 (283)
T 3edt_B 95 YGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQG-KAEEVEYYYRRALE 155 (283)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTT-CHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHH
Confidence 66666666666666665543 00 11 2234444444455554 45555555544433
No 93
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.08 E-value=3.7e-10 Score=99.12 Aligned_cols=130 Identities=14% Similarity=0.093 Sum_probs=99.6
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhc
Q 003829 644 LMYMYSRSENFARAEDVLREILAKGIKP-DIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAAD 721 (793)
Q Consensus 644 l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~ 721 (793)
|..++...|++++|+..+++.... .| +...+..+...|.+.|++++|.+.|+++++ +.| +..+|..++.+|...
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~ 78 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN--VQERDPKAHRFLGLLYELE 78 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHT
T ss_pred hHHHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHc
Confidence 445566778888888888887754 23 345667788888899999999999999888 444 568888888999999
Q ss_pred CChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHH-HHHHhhCCCCCCHH
Q 003829 722 SLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLNQRYEAITF-VNNLSKLDPHVTKE 779 (793)
Q Consensus 722 g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~~~~~ 779 (793)
|++++|+..|+++++. .| +...|..++..|.+.|++++|... ++++++.+|+++..
T Consensus 79 ~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~ 136 (150)
T 4ga2_A 79 ENTDKAVECYRRSVEL--NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAV 136 (150)
T ss_dssp TCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHH
T ss_pred CchHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHH
Confidence 9999999999998874 45 478888888888889988776654 58899998886543
No 94
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.08 E-value=1.1e-08 Score=95.88 Aligned_cols=171 Identities=9% Similarity=-0.023 Sum_probs=143.3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC----CHHHHHHHHHHHHHCCCCCCHHHH
Q 003829 601 PDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSE----NFARAEDVLREILAKGIKPDIISY 676 (793)
Q Consensus 601 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~~~~~~~~~~~~~~~~~ 676 (793)
-+...+..+...|...+++++|.+.|++..+.| +...+..|...|.. + ++++|+..|++..+.| +...+
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~ 88 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGE 88 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 467888889999999999999999999999876 77888888888888 7 8999999999998865 67788
Q ss_pred HHHHHHHHH----cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHH
Q 003829 677 NTVIFAYCR----NGRMKEASRIFSEMRDSGLV-PDVITYNTFVASYAA----DSLFVEALDVVRYMIKQGCKPNQNTYN 747 (793)
Q Consensus 677 ~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~ 747 (793)
..|...|.. .+++++|.++|++..+.|.. .....+..|+.+|.. .+++++|+.++++..+. ..+...+.
T Consensus 89 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~a~~ 166 (212)
T 3rjv_A 89 IVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL--SRTGYAEY 166 (212)
T ss_dssp HHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT--SCTTHHHH
T ss_pred HHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCCHHHHH
Confidence 888888887 88999999999999985432 026788999999998 88999999999999985 23556778
Q ss_pred HHHHHHHcc-C-----CHHHHHHHHHHHhhCCCCCCHHH
Q 003829 748 SIVDGYCKL-N-----QRYEAITFVNNLSKLDPHVTKEL 780 (793)
Q Consensus 748 ~l~~~~~~~-g-----~~~~A~~~~~~~~~~~~~~~~~~ 780 (793)
.|+..|... | +.++|..+++++.+.+.......
T Consensus 167 ~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~~A~~~ 205 (212)
T 3rjv_A 167 WAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFDTGCEE 205 (212)
T ss_dssp HHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 888888654 3 89999999999999986543333
No 95
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.04 E-value=1.4e-08 Score=96.27 Aligned_cols=170 Identities=12% Similarity=0.143 Sum_probs=134.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-H---HHH
Q 003829 603 IPTLNAMISIYGRRQMVAKTNEILHFMNDSGFT-P-SLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPD-I---ISY 676 (793)
Q Consensus 603 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~---~~~ 676 (793)
...+..++..+...|++++|...|+++.+.... + ....+..++.+|.+.|++++|+..|+++++.. |+ . ..+
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--P~~~~~~~a~ 81 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN--PTHPNIDYVM 81 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCcHHHHH
Confidence 445666777888999999999999999975311 1 13577888999999999999999999999863 33 2 245
Q ss_pred HHHHHHHHH------------------cCCHHHHHHHHHHHHHCCCCCCH-HHH-----------------HHHHHHHHh
Q 003829 677 NTVIFAYCR------------------NGRMKEASRIFSEMRDSGLVPDV-ITY-----------------NTFVASYAA 720 (793)
Q Consensus 677 ~~l~~~~~~------------------~g~~~~A~~~~~~~~~~~~~p~~-~~~-----------------~~l~~~~~~ 720 (793)
..++.++.. .|++++|...|+++++ ..|+. ..+ ..++..|.+
T Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~ 159 (225)
T 2yhc_A 82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVR--GYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTE 159 (225)
T ss_dssp HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHT--TCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHH--HCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666654 5789999999999998 44443 111 356778899
Q ss_pred cCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCH
Q 003829 721 DSLFVEALDVVRYMIKQGCKPN----QNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTK 778 (793)
Q Consensus 721 ~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 778 (793)
.|++++|+..++++++. .|+ ...+..++.+|.+.|+.++|++.++.+...+|...+
T Consensus 160 ~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 160 RGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp HTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred cCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 99999999999999985 343 356889999999999999999999999999887643
No 96
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.03 E-value=9e-10 Score=96.65 Aligned_cols=144 Identities=10% Similarity=0.001 Sum_probs=116.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 003829 609 MISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGR 688 (793)
Q Consensus 609 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 688 (793)
|+..+...|++++|+..+....... +.+...+-.+...|.+.|++++|++.|+++++.. +-+..+|..++.+|...|+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCc
Confidence 4555667889999999999887642 2334456678999999999999999999999863 3468899999999999999
Q ss_pred HHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHH-HHHHHHcCCCC-CHHHHHHHHHHHHccCC
Q 003829 689 MKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSLFVEALDV-VRYMIKQGCKP-NQNTYNSIVDGYCKLNQ 758 (793)
Q Consensus 689 ~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~p-~~~~~~~l~~~~~~~g~ 758 (793)
+++|...|+++++ +.| +..++..++.+|.+.|++++|.+. ++++++. .| +..+|......+...|+
T Consensus 81 ~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l--~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 81 TDKAVECYRRSVE--LNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL--FPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH--STTCHHHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhCc
Confidence 9999999999999 555 568899999999999999887765 5888874 55 47888888888887775
No 97
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.03 E-value=8.5e-07 Score=94.23 Aligned_cols=125 Identities=6% Similarity=0.024 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003829 604 PTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSE-NFARAEDVLREILAKGIKPDIISYNTVIFA 682 (793)
Q Consensus 604 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 682 (793)
.+|...+....+.+..+.|..+|++. +.. ..+...|...+..-...+ +.+.|..+|+...+. .+-+...|...+..
T Consensus 287 ~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~-~~~~~~~~~~yid~ 363 (493)
T 2uy1_A 287 LLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLK-HPDSTLLKEEFFLF 363 (493)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHH-CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 45666666666777899999999988 321 234455543333322333 689999999998876 23345556667777
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003829 683 YCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIK 736 (793)
Q Consensus 683 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 736 (793)
....|+.+.|+.+|+++.+ ....|...+..-...|+.+.+..+++++.+
T Consensus 364 e~~~~~~~~aR~l~er~~k-----~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 364 LLRIGDEENARALFKRLEK-----TSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHTCHHHHHHHHHHSCC-----BHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7788999999999988731 467778888777788998888888888764
No 98
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.03 E-value=5.4e-08 Score=93.98 Aligned_cols=180 Identities=10% Similarity=0.027 Sum_probs=109.1
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCChhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003829 298 AAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGC-LPSIVTYNSLISAYARDGLLEEAMELKTQMV 376 (793)
Q Consensus 298 A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 376 (793)
|...|++....+ .++..++..+..++...|++++|++++.+.+..+. .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 556666665544 34455555677777777777777777777655443 2245566777777777788888888877776
Q ss_pred HcCCCC-----CHHHHHHHHHHHH--HcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003829 377 EIGITP-----DVFTYTTLLSGFE--KAG--KDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINK 447 (793)
Q Consensus 377 ~~g~~~-----~~~~~~~li~~~~--~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 447 (793)
+. .| +..+...++.+++ ..| +..+|..+|+++.+. .|+......++.++.+.|++++|.+.++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 64 44 2455555555533 223 777777778777654 34433333444467777777777777776543
Q ss_pred CC---------CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcC
Q 003829 448 CN---------CKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAG 484 (793)
Q Consensus 448 ~~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 484 (793)
.. -+.+..+...+|......|+ +|.+++.++.+..
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 20 02345555444444444554 6666666666653
No 99
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.02 E-value=4.9e-09 Score=117.10 Aligned_cols=180 Identities=9% Similarity=-0.065 Sum_probs=144.3
Q ss_pred HcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 003829 570 ANGREIDQMLALSEEIYSERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYS 649 (793)
Q Consensus 570 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 649 (793)
...|++++|++.+++++... |. ......+.+...+..+...+...|++++|...|+++.+.+ +.+...|..+..+|.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~-~~-~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~ 478 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGA-LD-ADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAEL 478 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC---------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhc-cc-ccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHH
Confidence 67788888888877654100 00 0012224456788899999999999999999999999875 668889999999999
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHH
Q 003829 650 RSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSLFVEAL 728 (793)
Q Consensus 650 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~ 728 (793)
..|++++|+..|+++++.. +.+...|..+..+|...|++++ .+.|+++++ ..| +...|..++.+|.+.|++++|+
T Consensus 479 ~~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~ 554 (681)
T 2pzi_A 479 LTGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWS--TNDGVISAAFGLARARSAEGDRVGAV 554 (681)
T ss_dssp HHTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHH--hCCchHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999999863 3357889999999999999999 999999999 445 5688999999999999999999
Q ss_pred HHHHHHHHcCCCCC-HHHHHHHHHHHHccCC
Q 003829 729 DVVRYMIKQGCKPN-QNTYNSIVDGYCKLNQ 758 (793)
Q Consensus 729 ~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 758 (793)
+.|+++++ +.|+ ...+..++.++...|+
T Consensus 555 ~~~~~al~--l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 555 RTLDEVPP--TSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHTSCT--TSTTHHHHHHHHHHHTC----
T ss_pred HHHHhhcc--cCcccHHHHHHHHHHHHccCC
Confidence 99999987 4666 6778888888877555
No 100
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.00 E-value=8.3e-09 Score=113.38 Aligned_cols=157 Identities=8% Similarity=-0.104 Sum_probs=121.2
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 003829 616 RQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRI 695 (793)
Q Consensus 616 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 695 (793)
.|++++|.+.+++..+.. +.+...+..+...+...|++++|++.+++..+.. +.+...|..++.+|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478899999999988764 5578889999999999999999999999999863 34578899999999999999999999
Q ss_pred HHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc---CCHHHHHHHHHHHhh
Q 003829 696 FSEMRDSGLVP-DVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKL---NQRYEAITFVNNLSK 771 (793)
Q Consensus 696 ~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~ 771 (793)
++++++. .| +...+..++.+|...|++++|++.++++++.. +.+...+..++.++... |++++|.+.++++++
T Consensus 80 ~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 80 LQQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 9999984 44 56889999999999999999999999999853 33578889999999999 999999999999999
Q ss_pred CCCCCC
Q 003829 772 LDPHVT 777 (793)
Q Consensus 772 ~~~~~~ 777 (793)
.+|++.
T Consensus 157 ~~p~~~ 162 (568)
T 2vsy_A 157 QGVGAV 162 (568)
T ss_dssp HTCCCS
T ss_pred cCCccc
Confidence 998753
No 101
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.00 E-value=3.2e-09 Score=118.63 Aligned_cols=162 Identities=12% Similarity=0.003 Sum_probs=141.9
Q ss_pred HhcCCHHHHHHHHHHHH--------hCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 003829 614 GRRQMVAKTNEILHFMN--------DSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCR 685 (793)
Q Consensus 614 ~~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 685 (793)
...|++++|++.+++.. +.. +.+...+..+..++...|++++|+..|+++++.+ +.+...|..++.+|..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 67899999999999998 443 5677889999999999999999999999999863 3467899999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 003829 686 NGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAIT 764 (793)
Q Consensus 686 ~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 764 (793)
.|++++|.+.|+++++ ..| +...+..++.+|.+.|++++ ++.|+++++.+ +.+...|..++.+|.+.|++++|+.
T Consensus 480 ~g~~~~A~~~~~~al~--l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLD--TFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HTCHHHHHHHHHHHHH--HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999999 555 45889999999999999999 99999999853 3358899999999999999999999
Q ss_pred HHHHHhhCCCCCCHHHH
Q 003829 765 FVNNLSKLDPHVTKELE 781 (793)
Q Consensus 765 ~~~~~~~~~~~~~~~~~ 781 (793)
.++++++.+|++....+
T Consensus 556 ~~~~al~l~P~~~~a~~ 572 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARL 572 (681)
T ss_dssp HHHTSCTTSTTHHHHHH
T ss_pred HHHhhcccCcccHHHHH
Confidence 99999999998655443
No 102
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.99 E-value=1.9e-08 Score=86.33 Aligned_cols=130 Identities=12% Similarity=0.137 Sum_probs=114.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003829 605 TLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYC 684 (793)
Q Consensus 605 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 684 (793)
.+..++..+...|++++|..+++++.+.+ +.+...+..++..+...|++++|..+++++...+ +.+...+..++..+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 46677888999999999999999998764 5578888899999999999999999999999864 446778899999999
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003829 685 RNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQ 737 (793)
Q Consensus 685 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 737 (793)
..|++++|.++++++.+.... +...+..++.++...|++++|...++++++.
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 999999999999999984322 5678899999999999999999999999874
No 103
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.98 E-value=2.1e-08 Score=94.30 Aligned_cols=126 Identities=12% Similarity=0.059 Sum_probs=66.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 003829 606 LNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCR 685 (793)
Q Consensus 606 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 685 (793)
+..+...+...|++++|...|++.. .++...+..+..+|...|++++|+..+++..+.. +.+...|..++.+|..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence 3444555555566666666555542 3355555555555555666666666665555542 2234455555555555
Q ss_pred cCCHHHHHHHHHHHHHCCCC--------------C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003829 686 NGRMKEASRIFSEMRDSGLV--------------P-DVITYNTFVASYAADSLFVEALDVVRYMIK 736 (793)
Q Consensus 686 ~g~~~~A~~~~~~~~~~~~~--------------p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 736 (793)
.|++++|.+.|+++.+.... | ....+..++.+|...|++++|++.++++++
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 55566665555555552211 0 014445555555555555555555555554
No 104
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.98 E-value=4.6e-09 Score=95.20 Aligned_cols=162 Identities=11% Similarity=0.029 Sum_probs=128.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-H
Q 003829 605 TLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFA-Y 683 (793)
Q Consensus 605 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~ 683 (793)
.+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|+..++++.... |+...+..+... +
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLEL 84 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHH
Confidence 35556677889999999999999988764 5678889999999999999999999999988753 354443333322 2
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHH
Q 003829 684 CRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLNQRYE 761 (793)
Q Consensus 684 ~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~ 761 (793)
...+...+|...++++++ ..| +...+..++.++...|++++|+..++++++....+ +...+..++.++...|+.++
T Consensus 85 ~~~~~~~~a~~~~~~al~--~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 162 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELA--ANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNA 162 (176)
T ss_dssp HHHHTSCHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCH
T ss_pred HhhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCc
Confidence 233344568999999998 555 57889999999999999999999999999853222 25688899999999999999
Q ss_pred HHHHHHHHhh
Q 003829 762 AITFVNNLSK 771 (793)
Q Consensus 762 A~~~~~~~~~ 771 (793)
|...|++++.
T Consensus 163 A~~~y~~al~ 172 (176)
T 2r5s_A 163 IASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998764
No 105
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.97 E-value=8.4e-09 Score=87.11 Aligned_cols=108 Identities=19% Similarity=0.190 Sum_probs=91.8
Q ss_pred CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH
Q 003829 669 IKPD-IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTY 746 (793)
Q Consensus 669 ~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 746 (793)
+.|+ ...+...+..|.+.|++++|.+.|+++++ ..| +...|..++.+|...|++++|+..++++++.+ +.+...|
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~ 84 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVK--RDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGY 84 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHH
Confidence 3444 45677888999999999999999999998 444 56889999999999999999999999999853 3358889
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHH
Q 003829 747 NSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKE 779 (793)
Q Consensus 747 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 779 (793)
..++.+|...|++++|++.++++++.+|++...
T Consensus 85 ~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a 117 (126)
T 4gco_A 85 IRKAACLVAMREWSKAQRAYEDALQVDPSNEEA 117 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHH
Confidence 999999999999999999999999999986553
No 106
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.97 E-value=4.2e-09 Score=105.36 Aligned_cols=227 Identities=9% Similarity=0.041 Sum_probs=140.5
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHcCCCHHHHHH
Q 003829 502 CGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALAR-GGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLA 580 (793)
Q Consensus 502 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 580 (793)
.|++++|.+++++..+... . .+.+ .+++++|...|.+. ...|...|++++|..
T Consensus 4 ~~~~~eA~~~~~~a~k~~~--~---------~~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLK--T---------SFMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHC--C---------CSSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcc--c---------cccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 4566777777776655311 0 1222 46677777666654 346777888888888
Q ss_pred HHHHHHhHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHccCCH
Q 003829 581 LSEEIYSERAFLELKKKGFSP-DIPTLNAMISIYGRRQMVAKTNEILHFMNDS----GFTP-SLTTYNTLMYMYSRSENF 654 (793)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~ 654 (793)
.+.+.... ....+-.. -..+|..+...|...|++++|+..|++..+. |-+. -..++..+..+|.. |++
T Consensus 58 ~~~~al~~-----~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~ 131 (307)
T 2ifu_A 58 AYLQEAEA-----HANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDL 131 (307)
T ss_dssp HHHHHHHH-----HHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCH
T ss_pred HHHHHHHH-----HHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCH
Confidence 88876541 11222111 1346777788888888888888888877653 2111 12456677777777 888
Q ss_pred HHHHHHHHHHHHCCCCC-C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCh
Q 003829 655 ARAEDVLREILAKGIKP-D----IISYNTVIFAYCRNGRMKEASRIFSEMRDS----GLVPD-VITYNTFVASYAADSLF 724 (793)
Q Consensus 655 ~~A~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~ 724 (793)
++|+..|++.+...... + ..++..+..+|...|++++|..+|+++++. +..+. ...+..++.++...|++
T Consensus 132 ~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~ 211 (307)
T 2ifu_A 132 SKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADY 211 (307)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCH
Confidence 88888888877641110 1 356777778888888888888888888762 11111 13566666777777888
Q ss_pred HHHHHHHHHHHHcCCCCC------HHHHHHHHHHHHccCCHHHHHH
Q 003829 725 VEALDVVRYMIKQGCKPN------QNTYNSIVDGYCKLNQRYEAIT 764 (793)
Q Consensus 725 ~~A~~~~~~~~~~~~~p~------~~~~~~l~~~~~~~g~~~~A~~ 764 (793)
++|+..+++.+ . .|+ ......++.++ ..|+.+.+.+
T Consensus 212 ~~A~~~~~~al-~--~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 212 VAAQKCVRESY-S--IPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHHHHT-T--STTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHHHHh-C--CCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 88888888877 3 332 12334455544 5667665555
No 107
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.97 E-value=4.9e-07 Score=96.09 Aligned_cols=370 Identities=11% Similarity=-0.020 Sum_probs=202.3
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHc-CCCC-CHHHHHH
Q 003829 172 RGSVIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGR-YREAVMVFKKMEEE-GCKP-TLITYNV 248 (793)
Q Consensus 172 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~-~~~p-~~~~~~~ 248 (793)
...+|...+..+-. |+++.+..+|+..+.. .|++..|...+....+.+. .+....+|+..... |..+ +...|..
T Consensus 14 aR~vyer~l~~~P~-~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~ 90 (493)
T 2uy1_A 14 PSAIMEHARRLYMS-KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKE 90 (493)
T ss_dssp HHHHHHHHHHHHHT-TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHH
T ss_pred HHHHHHHHHHHCCC-CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHH
Confidence 33445555544433 8899999999998875 3588888888888877764 45677788877754 4333 6678888
Q ss_pred HHHHHHh----cCCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003829 249 ILNVYGK----MGMPWNKIMALVEGMKSAGVKPDS-YTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDV 323 (793)
Q Consensus 249 ll~~~~~----~g~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 323 (793)
.+..+.. .| +.+.+..+|++.+..... +. ..|..... +........+..+..+
T Consensus 91 Yi~f~~~~~~~~~-~~~~vR~iy~rAL~~P~~-~~~~lw~~Y~~-fE~~~~~~~~~~~~~~------------------- 148 (493)
T 2uy1_A 91 YIEEEGKIEDEQT-RIEKIRNGYMRALQTPMG-SLSELWKDFEN-FELELNKITGKKIVGD------------------- 148 (493)
T ss_dssp HHHHTSSCSSHHH-HHHHHHHHHHHHHTSCCT-THHHHHHHHHH-HHHHHCHHHHHHHHHH-------------------
T ss_pred HHHHHHhchhhhH-HHHHHHHHHHHHHhChhh-hHHHHHHHHHH-HHHHhccccHHHHHHH-------------------
Confidence 7776542 34 577888888888873211 11 12221111 1111111112111111
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC--C-----HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 003829 324 YGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDG--L-----LEEAMELKTQMVEIGITPDVFTYTTLLSGFEK 396 (793)
Q Consensus 324 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~-----~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 396 (793)
. .+.+..|..+++++...-...+...|...+..-...+ - .+.+..+|++++.. ++-+...|...+..+.+
T Consensus 149 ~--~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~-~p~~~~lW~~ya~~~~~ 225 (493)
T 2uy1_A 149 T--LPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDS-FYYAEEVYFFYSEYLIG 225 (493)
T ss_dssp H--HHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHH
T ss_pred H--hHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHH
Confidence 1 1123333444433322100012234444443322211 0 23455666666654 23345556666666666
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC------------CCCCHHHHHHHHHHH
Q 003829 397 AGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCN------------CKPDIVTWNTLLAVF 464 (793)
Q Consensus 397 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------------~~~~~~~~~~l~~~~ 464 (793)
.|+.+.|..+++..... +.+...+.. |....+.++. ++.+.+.- .......|...+...
T Consensus 226 ~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~ 296 (493)
T 2uy1_A 226 IGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYV 296 (493)
T ss_dssp TTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHH
Confidence 77777777777776665 223222221 1111111111 11111100 001124566666766
Q ss_pred HhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 003829 465 GQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSR-CGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQS 543 (793)
Q Consensus 465 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 543 (793)
.+.+..+.|..+|+.. +. ...+...|...+..-.. .++.+.|..+|+...+.-.. +...+...++...+.|+.+.|
T Consensus 297 ~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~-~~~~~~~yid~e~~~~~~~~a 373 (493)
T 2uy1_A 297 LKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPD-STLLKEEFFLFLLRIGDEENA 373 (493)
T ss_dssp HHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHH
T ss_pred HHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHH
Confidence 6777888899999888 32 12244444433322222 23689999999988876432 455666677777888999999
Q ss_pred HHHHHHHhcCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHH
Q 003829 544 EKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIY 586 (793)
Q Consensus 544 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 586 (793)
..+|+.+. .....|...+..-...|+.+.+..++++..
T Consensus 374 R~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 374 RALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99998873 245566666665566788888888777654
No 108
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.96 E-value=2.5e-08 Score=93.15 Aligned_cols=74 Identities=12% Similarity=0.096 Sum_probs=38.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 003829 214 LITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCR 290 (793)
Q Consensus 214 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 290 (793)
+..+|.+.|++++|+..|++..+..+ -+...+..+...+...| ++++|+..|++..+..+. +..++..+...|.
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~ 133 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAP-NNVDCLEACAEMQVCRG-QEKDALRMYEKILQLEAD-NLAANIFLGNYYY 133 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHH
Confidence 55555555555555555555555432 24455555555555555 555555555555554322 3444444444443
No 109
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.96 E-value=1.4e-08 Score=100.18 Aligned_cols=165 Identities=9% Similarity=-0.071 Sum_probs=139.2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHH-HHH
Q 003829 600 SPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIIS-YNT 678 (793)
Q Consensus 600 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~ 678 (793)
+.+...+..+...+...|++++|...|+++.+.. +.+...+..+..++.+.|++++|...++++... .|+... ...
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHH
Confidence 4456677888889999999999999999999875 668889999999999999999999999999875 445433 333
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHH
Q 003829 679 VIFAYCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPN---QNTYNSIVDGYC 754 (793)
Q Consensus 679 l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~ 754 (793)
....+...++.++|...++++++ ..| +...+..++.+|...|++++|+..++++++. .|+ ...+..++..|.
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~--~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~--~p~~~~~~a~~~l~~~~~ 266 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVA--ENPEDAALATQLALQLHQVGRNEEALELLFGHLRX--DLTAADGQTRXTFQEILA 266 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTGGGGHHHHHHHHHHH
T ss_pred HHHHHHhhcccCccHHHHHHHHh--cCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--ccccccchHHHHHHHHHH
Confidence 33457778889999999999998 445 5688999999999999999999999999985 343 678899999999
Q ss_pred ccCCHHHHHHHHHHHhh
Q 003829 755 KLNQRYEAITFVNNLSK 771 (793)
Q Consensus 755 ~~g~~~~A~~~~~~~~~ 771 (793)
..|+.++|...+++.+.
T Consensus 267 ~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 267 ALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHCTTCHHHHHHHHHHH
T ss_pred HcCCCCcHHHHHHHHHH
Confidence 99999999999998764
No 110
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.96 E-value=3.9e-08 Score=95.78 Aligned_cols=209 Identities=12% Similarity=-0.006 Sum_probs=128.9
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CC-HHHH
Q 003829 172 RGSVIAVLISMLGKEGKVSVAASLLHGLHKDGFDID---VYAYTSLITTYASNGRYREAVMVFKKMEEEGCK-PT-LITY 246 (793)
Q Consensus 172 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~-~~~~ 246 (793)
+...+......+.+.|++++|...|+.+++..+. + ..++..++.+|.+.|++++|+..|+++.+..+. |. ..++
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 5566777777788888888888888888776443 3 667788888888888888888888888876431 22 3466
Q ss_pred HHHHHHHHh--------cCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 003829 247 NVILNVYGK--------MGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYN 318 (793)
Q Consensus 247 ~~ll~~~~~--------~g~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~ 318 (793)
..+..++.. .| ++++|+..|+++.+..+. +......+ ..+..+... -...+.
T Consensus 93 ~~lg~~~~~~~~~~~~~~~-~~~~A~~~~~~~l~~~p~-~~~~~~a~--------------~~~~~~~~~----~~~~~~ 152 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQT-DTRKAIEAFQLFIDRYPN-HELVDDAT--------------QKIRELRAK----LARKQY 152 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCH-HHHHHHHHHHHHHHHCTT-CTTHHHHH--------------HHHHHHHHH----HHHHHH
T ss_pred HHHHHHHHHhcccccccch-hHHHHHHHHHHHHHHCcC-chhHHHHH--------------HHHHHHHHH----HHHHHH
Confidence 677777777 77 788888888887765432 11111111 111111100 011245
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCC--ChhHHHHHHHHHHhc----------CCHHHHHHHHHHHHHcCCCCC---
Q 003829 319 ALLDVYGKCRRPKEAMQVLREMKINGCLP--SIVTYNSLISAYARD----------GLLEEAMELKTQMVEIGITPD--- 383 (793)
Q Consensus 319 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~g~~~~--- 383 (793)
.+...|.+.|++++|+..|+++.+..... ....+..+..+|... |++++|++.|+++.+.. |+
T Consensus 153 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~ 230 (261)
T 3qky_A 153 EAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF--PDSPL 230 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC--TTCTH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC--CCChH
Confidence 56667777777777777777776642211 233566666666655 77777777777777652 32
Q ss_pred -HHHHHHHHHHHHHcCCHHHH
Q 003829 384 -VFTYTTLLSGFEKAGKDESA 403 (793)
Q Consensus 384 -~~~~~~li~~~~~~g~~~~a 403 (793)
......+...+.+.++++++
T Consensus 231 ~~~a~~~l~~~~~~~~~~~~~ 251 (261)
T 3qky_A 231 LRTAEELYTRARQRLTELEGD 251 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHhhhh
Confidence 23344444445555555443
No 111
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.92 E-value=4.9e-07 Score=88.49 Aligned_cols=219 Identities=10% Similarity=0.032 Sum_probs=161.8
Q ss_pred ChHHHHHHHHHHHhccCCCCCccchHHHHHHHHHHHHhcC--ChHHHHHHHHHHhhCCCCCCHHHHHHHHHHH----HHc
Q 003829 148 KTDLALDVFEWFRSCCSKDGNLVLRGSVIAVLISMLGKEG--KVSVAASLLHGLHKDGFDIDVYAYTSLITTY----ASN 221 (793)
Q Consensus 148 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~ 221 (793)
..+.|+..+..+.. .+| ....+|+.-..++...| +++++++.++.++...+. +..+|+.-..++ ...
T Consensus 48 ~s~~aL~~t~~~L~---~nP---~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l 120 (306)
T 3dra_A 48 YSERALHITELGIN---ELA---SHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELN 120 (306)
T ss_dssp CSHHHHHHHHHHHH---HCT---TCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHH---HCc---HHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhc
Confidence 33688999988877 333 36678888888888888 999999999998887665 667777777666 555
Q ss_pred ---CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHH--HHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC--
Q 003829 222 ---GRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWN--KIMALVEGMKSAGVKPDSYTFNTLISCCRRGSL-- 294 (793)
Q Consensus 222 ---g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~--~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~-- 294 (793)
+++++++.+++++.+..++ +..+|+--.-.+.+.| .++ +++++++++.+.++. |...|+.-...+.+.+.
T Consensus 121 ~~~~~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~-~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~ 197 (306)
T 3dra_A 121 NNDFDPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFD-LHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLA 197 (306)
T ss_dssp TTCCCTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGC
T ss_pred cccCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhc-ccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccc
Confidence 7889999999999887533 7788888887888877 677 888888888887665 77777777666666665
Q ss_pred ----HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH-HHHHHHHHHHcC--CCCChhHHHHHHHHHHhcCCHHH
Q 003829 295 ----HEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKE-AMQVLREMKING--CLPSIVTYNSLISAYARDGLLEE 367 (793)
Q Consensus 295 ----~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~ 367 (793)
++++.+.+..++... +-|...|+.+...+.+.|+..+ +..+.+++.+.+ ...+...+..++..|.+.|+.++
T Consensus 198 ~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~ 276 (306)
T 3dra_A 198 TDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNE 276 (306)
T ss_dssp CHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHH
T ss_pred hhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHH
Confidence 778888888877764 3477778777777777776443 445555554322 13356677777777878888888
Q ss_pred HHHHHHHHHH
Q 003829 368 AMELKTQMVE 377 (793)
Q Consensus 368 A~~~~~~m~~ 377 (793)
|.++++.+.+
T Consensus 277 A~~~~~~l~~ 286 (306)
T 3dra_A 277 SRTVYDLLKS 286 (306)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 8888888775
No 112
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.91 E-value=8.2e-08 Score=95.27 Aligned_cols=167 Identities=12% Similarity=0.067 Sum_probs=126.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHccCCHHHHHHHHHHHHHCCC---CCC--H
Q 003829 605 TLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSL------TTYNTLMYMYSRSENFARAEDVLREILAKGI---KPD--I 673 (793)
Q Consensus 605 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~--~ 673 (793)
.+...+..+...|++++|.+.+.+..+.... .. ..+..+...+...|++++|+..+++...... .+. .
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEY-HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccC-ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 4445666778899999999999888775322 22 2234466677888999999999999986421 111 4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHHHcC----CCCC-
Q 003829 674 ISYNTVIFAYCRNGRMKEASRIFSEMRDS-GLVPD-----VITYNTFVASYAADSLFVEALDVVRYMIKQG----CKPN- 742 (793)
Q Consensus 674 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~p~- 742 (793)
.+|+.++..|...|++++|..+|+++.+. ...|+ ..++..++.+|...|++++|+..++++++.. ....
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 58889999999999999999999999831 01222 2588999999999999999999999987531 1111
Q ss_pred HHHHHHHHHHHHccCCHHHH-HHHHHHHhhC
Q 003829 743 QNTYNSIVDGYCKLNQRYEA-ITFVNNLSKL 772 (793)
Q Consensus 743 ~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~~ 772 (793)
..+|..++.+|.+.|++++| ..+++++++.
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 67789999999999999999 8889988765
No 113
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.90 E-value=1.6e-07 Score=87.88 Aligned_cols=175 Identities=10% Similarity=0.036 Sum_probs=117.5
Q ss_pred HHHHHHHHhcCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----C
Q 003829 543 SEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSERAFLELKKKGFSPDIPTLNAMISIYGRRQ----M 618 (793)
Q Consensus 543 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~ 618 (793)
|...|++..+.+ +...+..+...|...+++++|+.+|++... . -+...+..|...|.. + +
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~---------~---g~~~a~~~lg~~y~~-~g~~~~ 68 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAA---------Q---GDGDALALLAQLKIR-NPQQAD 68 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---------T---TCHHHHHHHHHHTTS-STTSCC
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHH---------c---CCHHHHHHHHHHHHc-CCCCCC
Confidence 444444444432 444555555555555566666665554321 1 244555556666655 5 7
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHH----cCCH
Q 003829 619 VAKTNEILHFMNDSGFTPSLTTYNTLMYMYSR----SENFARAEDVLREILAKGIK-PDIISYNTVIFAYCR----NGRM 689 (793)
Q Consensus 619 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~ 689 (793)
+++|.+.|++..+.| +...+..|...|.. .+++++|+..|++..+.+.. .+...+..|...|.. .+++
T Consensus 69 ~~~A~~~~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~ 145 (212)
T 3rjv_A 69 YPQARQLAEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDD 145 (212)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCH
T ss_pred HHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCH
Confidence 778888888777754 66777777777776 77888888888888876421 126778888888887 7889
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-C-----ChHHHHHHHHHHHHcC
Q 003829 690 KEASRIFSEMRDSGLVPDVITYNTFVASYAAD-S-----LFVEALDVVRYMIKQG 738 (793)
Q Consensus 690 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~~ 738 (793)
++|.++|++..+. ..+...+..|+.+|..- | ++++|+.++++..+.|
T Consensus 146 ~~A~~~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 146 VKASEYFKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHHHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 9999999998885 22445677788877643 3 7899999999988876
No 114
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.90 E-value=8.8e-07 Score=86.66 Aligned_cols=171 Identities=9% Similarity=0.018 Sum_probs=102.6
Q ss_pred ChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH----Hhc---CC
Q 003829 188 KVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNG--RYREAVMVFKKMEEEGCKPTLITYNVILNVY----GKM---GM 258 (793)
Q Consensus 188 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~----~~~---g~ 258 (793)
..++|+.+++.++...+. +..+|+.-..++...| ++++++.+++.+...+++ +..+|+.-...+ ... +
T Consensus 48 ~s~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~- 124 (306)
T 3dra_A 48 YSERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDF- 124 (306)
T ss_dssp CSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCC-
T ss_pred CCHHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccC-
Confidence 446889999998887665 7778999999998888 899999999999987644 556666655554 444 3
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC------h
Q 003829 259 PWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHE--EAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRR------P 330 (793)
Q Consensus 259 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~--~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~------~ 330 (793)
++++++++++.+.+...+ +-.+|+.-.-.+.+.|.++ ++.+.++++.+... .|...|+.-..++.+.|. +
T Consensus 125 ~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 125 DPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp CTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccchhhhH
Confidence 566666666666665443 5555555555555555555 55555555555432 244444444444444443 4
Q ss_pred HHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC
Q 003829 331 KEAMQVLREMKINGCLPSIVTYNSLISAYARDGL 364 (793)
Q Consensus 331 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 364 (793)
+++++.+++++.. .+-|...|+-+...+.+.|+
T Consensus 203 ~eEl~~~~~aI~~-~p~n~SaW~y~~~ll~~~~~ 235 (306)
T 3dra_A 203 DEELNYVKDKIVK-CPQNPSTWNYLLGIHERFDR 235 (306)
T ss_dssp HHHHHHHHHHHHH-CSSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHh-CCCCccHHHHHHHHHHhcCC
Confidence 4444444444443 22244444444444444444
No 115
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.89 E-value=6.8e-07 Score=88.55 Aligned_cols=166 Identities=13% Similarity=0.079 Sum_probs=128.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCH----HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCC-CC----HHHH
Q 003829 607 NAMISIYGRRQMVAKTNEILHFMNDSGF-TPSL----TTYNTLMYMYSRSENFARAEDVLREILAKGIK-PD----IISY 676 (793)
Q Consensus 607 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~ 676 (793)
...+..+...|++++|..++++..+... .++. ..+..+...+...|++++|+..++++...... .+ ..++
T Consensus 79 ~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 3u3w_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 3346678889999999999999987531 1221 13345777788888999999999999984222 22 3368
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH----C-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCC-HHH
Q 003829 677 NTVIFAYCRNGRMKEASRIFSEMRD----S-GLVPD-VITYNTFVASYAADSLFVEALDVVRYMIKQ----GCKPN-QNT 745 (793)
Q Consensus 677 ~~l~~~~~~~g~~~~A~~~~~~~~~----~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~ 745 (793)
+.++.+|...|++++|..+|+++++ . +..+. ..+|..++.+|.+.|++++|+.+++++++. +..+. ..+
T Consensus 159 ~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~ 238 (293)
T 3u3w_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 9999999999999999999999985 1 12222 257899999999999999999999998752 22222 678
Q ss_pred HHHHHHHHHccCC-HHHHHHHHHHHhhC
Q 003829 746 YNSIVDGYCKLNQ-RYEAITFVNNLSKL 772 (793)
Q Consensus 746 ~~~l~~~~~~~g~-~~~A~~~~~~~~~~ 772 (793)
|..++.+|.+.|+ +++|.+.++++++.
T Consensus 239 ~~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 239 YYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 9999999999995 69999999999865
No 116
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.89 E-value=1.9e-08 Score=87.57 Aligned_cols=101 Identities=13% Similarity=0.084 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHH
Q 003829 673 IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIV 750 (793)
Q Consensus 673 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~ 750 (793)
...+..++..+...|++++|...|+++++ ..| +...|..++.+|...|++++|+..|+++++. .| +...|..++
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l--~P~~~~~~~~lg 111 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCI--YDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL--GKNDYTPVFHTG 111 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SSSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--CCCCcHHHHHHH
Confidence 45677788888888888888888888888 444 5677888888888888888888888888874 44 477888888
Q ss_pred HHHHccCCHHHHHHHHHHHhhCCCCCC
Q 003829 751 DGYCKLNQRYEAITFVNNLSKLDPHVT 777 (793)
Q Consensus 751 ~~~~~~g~~~~A~~~~~~~~~~~~~~~ 777 (793)
.+|.+.|++++|+..++++++..|+++
T Consensus 112 ~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 112 QCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 888888888888888888888887754
No 117
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.85 E-value=3.7e-07 Score=86.35 Aligned_cols=204 Identities=12% Similarity=0.010 Sum_probs=115.6
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-H-HHHH
Q 003829 172 RGSVIAVLISMLGKEGKVSVAASLLHGLHKDGFDI--DVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPT-L-ITYN 247 (793)
Q Consensus 172 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~-~~~~ 247 (793)
+...+......+...|++++|...|+.+++..+.. ...++..++.+|.+.|++++|+..|+++.+..+... . .++.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 34566667777888888888888888887654321 135677788888888888888888888887643311 1 2455
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHh
Q 003829 248 VILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPD-KVTYNALLDVYGK 326 (793)
Q Consensus 248 ~ll~~~~~~g~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~~~-~~~~~~li~~~~~ 326 (793)
.+...+.+.| .. .++ .|..+...+...|++++|...|+++.+. .|+ ...+.++....
T Consensus 83 ~~g~~~~~~~-~~-----~~~------------~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~-- 140 (225)
T 2yhc_A 83 MRGLTNMALD-DS-----ALQ------------GFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLV-- 140 (225)
T ss_dssp HHHHHHHHHH-C-------------------------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHH--
T ss_pred HHHHHHHhhh-hh-----hhh------------hhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHH--
Confidence 5555555433 10 111 1112223344567777888888777765 232 22222111100
Q ss_pred cCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHHcCCHHHH
Q 003829 327 CRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDV---FTYTTLLSGFEKAGKDESA 403 (793)
Q Consensus 327 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~---~~~~~li~~~~~~g~~~~a 403 (793)
.+...+ ......+...|.+.|++++|+..|+++++.. +.+. ..+..+..++.+.|+.++|
T Consensus 141 --------~~~~~~--------~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~l~~~~~~~g~~~~A 203 (225)
T 2yhc_A 141 --------FLKDRL--------AKYEYSVAEYYTERGAWVAVVNRVEGMLRDY-PDTQATRDALPLMENAYRQMQMNAQA 203 (225)
T ss_dssp --------HHHHHH--------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTSHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred --------HHHHHH--------HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHC-cCCCccHHHHHHHHHHHHHcCCcHHH
Confidence 000000 0112245566777777777777777777652 1121 3466667777777777777
Q ss_pred HHHHHHHHHCC
Q 003829 404 MKVFEEMRSAG 414 (793)
Q Consensus 404 ~~~~~~~~~~~ 414 (793)
.+.++.+...+
T Consensus 204 ~~~~~~l~~~~ 214 (225)
T 2yhc_A 204 EKVAKIIAANS 214 (225)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHhhC
Confidence 77777776653
No 118
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.85 E-value=3.1e-08 Score=98.96 Aligned_cols=230 Identities=10% Similarity=0.033 Sum_probs=154.4
Q ss_pred hCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 003829 466 QNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSR-CGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSE 544 (793)
Q Consensus 466 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 544 (793)
..|++++|.+++++..+.... .+.+ .++++.|...|..+ ...|...|++++|.
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~-----------~~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~ 56 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKT-----------SFMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAK 56 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCC-----------CSSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccc-----------cccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHH
Confidence 356788888888887764221 1333 57888888887765 34577789999999
Q ss_pred HHHHHHhcCCC---CC--CHhhHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCC
Q 003829 545 KIFAEMKGGRC---KP--NELTYSSLLHAYANGREIDQMLALSEEIYSERAFLELKKKGFSP-DIPTLNAMISIYGRRQM 618 (793)
Q Consensus 545 ~~~~~~~~~~~---~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~ 618 (793)
..|.+..+... .+ -..+|..+...|...|++++|+..+++.+. .....+-.. ...++..+...|.. |+
T Consensus 57 ~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~-----l~~~~g~~~~~a~~~~~lg~~~~~-g~ 130 (307)
T 2ifu_A 57 DAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASV-----MYVENGTPDTAAMALDRAGKLMEP-LD 130 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHH-----HHHTTTCHHHHHHHHHHHHHHHTT-TC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-----HHHHcCCHHHHHHHHHHHHHHHHc-CC
Confidence 88887754310 11 134677888888899999999999887652 222233211 13567788888888 99
Q ss_pred HHHHHHHHHHHHhCCCCC-C----HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHHcCC
Q 003829 619 VAKTNEILHFMNDSGFTP-S----LTTYNTLMYMYSRSENFARAEDVLREILAKGIK-PD----IISYNTVIFAYCRNGR 688 (793)
Q Consensus 619 ~~~A~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~ 688 (793)
+++|+..|++..+..... + ..++..+...|...|++++|+..|++.+..... .+ ...+..++.++...|+
T Consensus 131 ~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~ 210 (307)
T 2ifu_A 131 LSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRAD 210 (307)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCC
Confidence 999999998887642111 1 356778888899999999999999998864211 11 2356667777888899
Q ss_pred HHHHHHHHHHHHHCCCCC-CH---HHHHHHHHHHHhcCChHHHHH
Q 003829 689 MKEASRIFSEMRDSGLVP-DV---ITYNTFVASYAADSLFVEALD 729 (793)
Q Consensus 689 ~~~A~~~~~~~~~~~~~p-~~---~~~~~l~~~~~~~g~~~~A~~ 729 (793)
+++|...|++.+ ....- +. .....++.++ ..|+.+.+.+
T Consensus 211 ~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 211 YVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 999999999988 42211 11 2344555544 5677655555
No 119
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.84 E-value=2.3e-08 Score=90.51 Aligned_cols=160 Identities=11% Similarity=0.022 Sum_probs=87.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-H
Q 003829 176 IAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVY-G 254 (793)
Q Consensus 176 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~-~ 254 (793)
+......+...|++++|...|+.+++..+. +...+..+..++...|++++|+..|+++.+..+ +...+..+.... .
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQS-RGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHT-SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHHHH
Confidence 445556667777788888777776655433 667777777777788888888888777765532 443332222111 1
Q ss_pred hcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHH
Q 003829 255 KMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSP-DKVTYNALLDVYGKCRRPKEA 333 (793)
Q Consensus 255 ~~g~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~~-~~~~~~~li~~~~~~g~~~~A 333 (793)
..+ ...+++..+++..+..+. +...+..+...+...|++++|...|+++.+....+ +...+..+..++...|+.++|
T Consensus 86 ~~~-~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 86 QQA-AESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHH-TSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred hhc-ccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 111 122345555555544322 34455555555555555555555555555442111 133455555555555555555
Q ss_pred HHHHHHH
Q 003829 334 MQVLREM 340 (793)
Q Consensus 334 ~~~~~~~ 340 (793)
...|++.
T Consensus 164 ~~~y~~a 170 (176)
T 2r5s_A 164 ASKYRRQ 170 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555544
No 120
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.79 E-value=1.8e-07 Score=92.16 Aligned_cols=164 Identities=12% Similarity=-0.001 Sum_probs=82.8
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003829 172 RGSVIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILN 251 (793)
Q Consensus 172 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~ 251 (793)
+...+..+...+...|++++|...|+.++...+. +..++..++.++.+.|++++|+..|+++.+.. |+.........
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~~ 192 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVAQ 192 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHHH
Confidence 4445555556666666666666666666555433 55566666666666666666666666665442 33322222111
Q ss_pred -HHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCC
Q 003829 252 -VYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFS-PDKVTYNALLDVYGKCRR 329 (793)
Q Consensus 252 -~~~~~g~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~-~~~~~~~~li~~~~~~g~ 329 (793)
.+.+.+ ..++|+..+++..+..+. +...+..+...+...|++++|...++++.+.... .+...+..++..|...|+
T Consensus 193 ~~l~~~~-~~~~a~~~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~ 270 (287)
T 3qou_A 193 IELLXQA-ADTPEIQQLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGT 270 (287)
T ss_dssp HHHHHHH-TSCHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCT
T ss_pred HHHHhhc-ccCccHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCC
Confidence 233333 344455555555444322 3444555555555555555555555555544211 013345555555555555
Q ss_pred hHHHHHHHHHH
Q 003829 330 PKEAMQVLREM 340 (793)
Q Consensus 330 ~~~A~~~~~~~ 340 (793)
.++|...|++.
T Consensus 271 ~~~a~~~~r~a 281 (287)
T 3qou_A 271 GDALASXYRRQ 281 (287)
T ss_dssp TCHHHHHHHHH
T ss_pred CCcHHHHHHHH
Confidence 55555555443
No 121
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.78 E-value=1.7e-08 Score=88.05 Aligned_cols=103 Identities=13% Similarity=0.056 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003829 673 IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVD 751 (793)
Q Consensus 673 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 751 (793)
...+..++..+...|++++|...|+++++ ..| +...|..++.+|...|++++|+..++++++.+ +.+...+..++.
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~ 97 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCV--LDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHH--cCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHH
Confidence 45666777778888888888888888877 333 56777778888888888888888888887742 224677777888
Q ss_pred HHHccCCHHHHHHHHHHHhhCCCCCCH
Q 003829 752 GYCKLNQRYEAITFVNNLSKLDPHVTK 778 (793)
Q Consensus 752 ~~~~~g~~~~A~~~~~~~~~~~~~~~~ 778 (793)
+|...|++++|+..++++++..|+++.
T Consensus 98 ~~~~~g~~~~A~~~~~~al~~~p~~~~ 124 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQELIANXPE 124 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHTTCGG
T ss_pred HHHHcCCHHHHHHHHHHHHHHCcCCCc
Confidence 888888888888888888887776543
No 122
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.78 E-value=3.9e-07 Score=85.43 Aligned_cols=143 Identities=13% Similarity=0.057 Sum_probs=121.2
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003829 640 TYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYA 719 (793)
Q Consensus 640 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 719 (793)
.+..+...+...|++++|+..|+++. .++...|..++.+|...|++++|.+.|+++++.... +...+..++.+|.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHH
Confidence 34566778889999999999999874 568889999999999999999999999999984322 5688999999999
Q ss_pred hcCChHHHHHHHHHHHHcCCCCC----------------HHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHH
Q 003829 720 ADSLFVEALDVVRYMIKQGCKPN----------------QNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKELECK 783 (793)
Q Consensus 720 ~~g~~~~A~~~~~~~~~~~~~p~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 783 (793)
..|++++|++.++++++.. +.+ ...+..++.+|.+.|++++|...++++++.+|++....+..
T Consensus 83 ~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 161 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDK 161 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGGGHHHH
T ss_pred HcccHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccccchHHH
Confidence 9999999999999999842 212 37889999999999999999999999999999876666555
Q ss_pred HHHHH
Q 003829 784 LSDRI 788 (793)
Q Consensus 784 l~~~l 788 (793)
.+..+
T Consensus 162 a~~~~ 166 (213)
T 1hh8_A 162 AMECV 166 (213)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55554
No 123
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.76 E-value=6.1e-08 Score=87.87 Aligned_cols=127 Identities=7% Similarity=0.043 Sum_probs=93.8
Q ss_pred HccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCh--H
Q 003829 649 SRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVAS-YAADSLF--V 725 (793)
Q Consensus 649 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~--~ 725 (793)
...|++++|+..+++..+.. +.+...|..++.+|...|++++|...|+++.+.... +...+..++.+ +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCCcchH
Confidence 34577888888888887753 345678888888888888888888888888873222 55677777777 7788887 8
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCH
Q 003829 726 EALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTK 778 (793)
Q Consensus 726 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 778 (793)
+|+..++++++.+ +.+...+..++.+|...|++++|...++++++..|++..
T Consensus 99 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 150 (177)
T 2e2e_A 99 QTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRIN 150 (177)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSC
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCcc
Confidence 8888888888752 234777888888888888888888888888888887644
No 124
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.76 E-value=2e-07 Score=78.56 Aligned_cols=108 Identities=11% Similarity=0.074 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHH
Q 003829 639 TTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVAS 717 (793)
Q Consensus 639 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~ 717 (793)
..+...+..|.+.|++++|++.|++.++.. +.+...|..++.+|...|++++|+..|+++++ +.| +...|..++.+
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~a~~~lg~~ 90 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIR--LDSKFIKGYIRKAAC 90 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHH--hhhhhhHHHHHHHHH
Confidence 345667777888888888888888888753 34577788888888888888888888888887 444 45778888888
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHH
Q 003829 718 YAADSLFVEALDVVRYMIKQGCKPN-QNTYNSIVD 751 (793)
Q Consensus 718 ~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~ 751 (793)
|...|++++|++.|+++++. .|+ ...+..|..
T Consensus 91 ~~~~~~~~~A~~~~~~al~l--~P~~~~a~~~l~~ 123 (126)
T 4gco_A 91 LVAMREWSKAQRAYEDALQV--DPSNEEAREGVRN 123 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHH--CcCCHHHHHHHHH
Confidence 88888888888888888874 453 555555554
No 125
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.74 E-value=9.4e-08 Score=83.12 Aligned_cols=103 Identities=10% Similarity=0.053 Sum_probs=87.6
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHH
Q 003829 637 SLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFV 715 (793)
Q Consensus 637 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~ 715 (793)
+...+..+...+.+.|++++|+..|++++... +.+...|..++.+|...|++++|...|+++++ +.| +...|..++
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~--l~P~~~~~~~~lg 111 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFA--LGKNDYTPVFHTG 111 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSSSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHh--hCCCCcHHHHHHH
Confidence 45567788888999999999999999999863 34688899999999999999999999999998 555 457889999
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHH
Q 003829 716 ASYAADSLFVEALDVVRYMIKQGCKPNQN 744 (793)
Q Consensus 716 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 744 (793)
.+|...|++++|+..|+++++. .|+..
T Consensus 112 ~~~~~lg~~~eA~~~~~~al~l--~~~~~ 138 (151)
T 3gyz_A 112 QCQLRLKAPLKAKECFELVIQH--SNDEK 138 (151)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CCCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh--CCCHH
Confidence 9999999999999999999984 56654
No 126
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.74 E-value=2.9e-07 Score=87.70 Aligned_cols=192 Identities=11% Similarity=-0.048 Sum_probs=142.3
Q ss_pred cCCCHHHHHHHHHHHHhHHHHHHHHHCCCCCCHHHHHHH-------HHHHHhcCCHHHHHHHHHHHHhC-----------
Q 003829 571 NGREIDQMLALSEEIYSERAFLELKKKGFSPDIPTLNAM-------ISIYGRRQMVAKTNEILHFMNDS----------- 632 (793)
Q Consensus 571 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~A~~~~~~~~~~----------- 632 (793)
..++...|.+.|.++... -+-....|..+ ...+...++..+++..+....+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~----------dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~ 87 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNY----------DESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAI 87 (282)
T ss_dssp TTTCHHHHHHHHHHHHHH----------CTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEEC
T ss_pred cCCCHHHHHHHHHHHHHh----------ChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhcc
Confidence 578888898888876641 13345667766 45555555566666666655541
Q ss_pred -CCC--------CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 003829 633 -GFT--------PSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSG 703 (793)
Q Consensus 633 -~~~--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 703 (793)
|.- .-......+...+...|++++|.++|+.+... .|+......+...+.+.|++++|+..|+...+..
T Consensus 88 ~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~ 165 (282)
T 4f3v_A 88 GGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP 165 (282)
T ss_dssp CTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS
T ss_pred CCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC
Confidence 210 01233455677888999999999999998875 3554477777788999999999999998665521
Q ss_pred CCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCC
Q 003829 704 LVPD--VITYNTFVASYAADSLFVEALDVVRYMIKQGCKPN--QNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPH 775 (793)
Q Consensus 704 ~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 775 (793)
.|. ...+..++.++...|++++|+..|++.......|. ......++.++.+.|+.++|...|+++...+|+
T Consensus 166 -d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 166 -DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred -CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 111 24788999999999999999999999985433254 456778889999999999999999999999998
No 127
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.73 E-value=2.9e-07 Score=101.01 Aligned_cols=152 Identities=11% Similarity=-0.030 Sum_probs=73.6
Q ss_pred CChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHH
Q 003829 187 GKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMAL 266 (793)
Q Consensus 187 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~~a~~~ 266 (793)
|++++|.+.++++.+..+. +...+..+...+...|++++|+..|++..+.. +.+...|..+...|...| ++++|.+.
T Consensus 3 g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g-~~~~A~~~ 79 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQ-DFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQ-RHAEAAVL 79 (568)
T ss_dssp ------------------C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTT-CHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCC-CHHHHHHH
Confidence 4455555555555544322 45555555566666666666666666655543 124455555555555555 55666555
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CChHHHHHHHHHHHHc
Q 003829 267 VEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKC---RRPKEAMQVLREMKIN 343 (793)
Q Consensus 267 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~~~~~ 343 (793)
+++..+.... +...+..+..++.+.|++++|.+.+++..+.. +.+...+..+...+... |++++|.+.+++..+.
T Consensus 80 ~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 5555554322 34455555555555566666666666555542 22344555555555555 6666666666665554
No 128
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.73 E-value=1.6e-07 Score=83.74 Aligned_cols=102 Identities=9% Similarity=0.022 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003829 674 ISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDG 752 (793)
Q Consensus 674 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 752 (793)
..|..+...+...|++++|..+|+++++ ..| +...|..++.+|...|++++|+..++++++.. +.+...|..++.+
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALS--IAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3444455555555555555555555555 222 34455555555555555555555555555431 1124455555555
Q ss_pred HHccCCHHHHHHHHHHHhhCCCCCCH
Q 003829 753 YCKLNQRYEAITFVNNLSKLDPHVTK 778 (793)
Q Consensus 753 ~~~~g~~~~A~~~~~~~~~~~~~~~~ 778 (793)
|.+.|++++|+..++++++.+|++..
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~p~~~~ 114 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAEGNGGS 114 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHSSSCC
T ss_pred HHHccCHHHHHHHHHHHHHhCCCchH
Confidence 55555555555555555555555444
No 129
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.71 E-value=2.2e-07 Score=86.31 Aligned_cols=160 Identities=12% Similarity=0.010 Sum_probs=121.2
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHHcCC
Q 003829 614 GRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAK----GIKP-DIISYNTVIFAYCRNGR 688 (793)
Q Consensus 614 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~ 688 (793)
...|++++|.++++.+... ......++..+...+...|++++|+..+++.... +..+ ...++..+...|...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 4578999999966555442 2345677889999999999999999999998862 1111 24678888999999999
Q ss_pred HHHHHHHHHHHHHC----CCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHccC
Q 003829 689 MKEASRIFSEMRDS----GLVP--DVITYNTFVASYAADSLFVEALDVVRYMIKQGC-KPN----QNTYNSIVDGYCKLN 757 (793)
Q Consensus 689 ~~~A~~~~~~~~~~----~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~g 757 (793)
+++|.+.+++..+. +-.+ ....+..++.++...|++++|...+++.++..- ..+ ..++..++.++...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 99999999998872 2122 135688999999999999999999999874210 112 345678899999999
Q ss_pred CHHHHHHHHHHHhhCCC
Q 003829 758 QRYEAITFVNNLSKLDP 774 (793)
Q Consensus 758 ~~~~A~~~~~~~~~~~~ 774 (793)
++++|...++++++...
T Consensus 162 ~~~~A~~~~~~al~~~~ 178 (203)
T 3gw4_A 162 NLLEAQQHWLRARDIFA 178 (203)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 99999999999998743
No 130
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.71 E-value=5e-07 Score=80.61 Aligned_cols=131 Identities=15% Similarity=0.074 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003829 639 TTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASY 718 (793)
Q Consensus 639 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 718 (793)
..+..+...+...|++++|...+++..+.. +.+...+..++.++...|++++|...++++++.... +...+..++.++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHH
Confidence 345566667777788888888888777652 335667777778888888888888888888773221 456777788888
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHH--HHHHHHccCCHHHHHHHHHHHhhC
Q 003829 719 AADSLFVEALDVVRYMIKQGCKPNQNTYNS--IVDGYCKLNQRYEAITFVNNLSKL 772 (793)
Q Consensus 719 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~--l~~~~~~~g~~~~A~~~~~~~~~~ 772 (793)
...|++++|+..++++++.. +.+...+.. ++..+.+.|++++|+..+++..+.
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 88888888888888887642 223444433 333366778888888887776543
No 131
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.67 E-value=9.1e-08 Score=80.85 Aligned_cols=102 Identities=15% Similarity=0.196 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC--CCCC----HHH
Q 003829 673 IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSLFVEALDVVRYMIKQG--CKPN----QNT 745 (793)
Q Consensus 673 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~p~----~~~ 745 (793)
...+..++..+.+.|++++|++.|+++++ +.| +...|..++.+|...|++++|++.++++++.+ ..++ ..+
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~--~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~ 85 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIE--LDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKA 85 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHH
Confidence 34667788888888899999999888888 444 45778888888889999999998888887631 1111 246
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHhhCCCCC
Q 003829 746 YNSIVDGYCKLNQRYEAITFVNNLSKLDPHV 776 (793)
Q Consensus 746 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 776 (793)
|..++.++...|++++|++.++++++..|++
T Consensus 86 ~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~ 116 (127)
T 4gcn_A 86 MSRAGNAFQKQNDLSLAVQWFHRSLSEFRDP 116 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSCCH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCcCH
Confidence 7778888889999999999999998887764
No 132
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.67 E-value=4e-06 Score=83.00 Aligned_cols=162 Identities=9% Similarity=-0.036 Sum_probs=106.3
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHCCC-CCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CC----hhHHHH
Q 003829 285 LISCCRRGSLHEEAAGVFEEMKLAGF-SPDK----VTYNALLDVYGKCRRPKEAMQVLREMKINGCL-PS----IVTYNS 354 (793)
Q Consensus 285 l~~~~~~~~~~~~A~~~~~~~~~~g~-~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~ 354 (793)
.+..+...|++++|..++++..+... .++. ..+..+...+...|++++|+..|++..+.... .+ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 35567778888888888888876421 2221 13334666677777888888888888763221 22 225788
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc-----CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC-HHHHH
Q 003829 355 LISAYARDGLLEEAMELKTQMVEI-----GITPD-VFTYTTLLSGFEKAGKDESAMKVFEEMRSA----GCKPN-ICTFN 423 (793)
Q Consensus 355 li~~~~~~g~~~~A~~~~~~m~~~-----g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~-~~~~~ 423 (793)
+...|...|++++|++.++++.+. +..+. ..++..+...|.+.|++++|...+++.++. +.... ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 888888888888888888887742 11111 235667777788888888888887776542 21112 45677
Q ss_pred HHHHHHHhcC-CHHHHHHHHHHHH
Q 003829 424 ALIKMHGNRG-NFVEMMKVFDEIN 446 (793)
Q Consensus 424 ~l~~~~~~~g-~~~~A~~~~~~~~ 446 (793)
.+..+|.+.| ++++|.+.+++..
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHH
Confidence 7777777777 4577777776654
No 133
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.66 E-value=3.1e-07 Score=77.58 Aligned_cols=99 Identities=15% Similarity=0.092 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003829 673 IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDG 752 (793)
Q Consensus 673 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 752 (793)
...|..++..+...|++++|...|+++++.... +...|..++.+|...|++++|+..++++++.+ +.+...|..++.+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 346677777888888888888888888873222 46778888888888888888888888888742 2247778888888
Q ss_pred HHccCCHHHHHHHHHHHhhCC
Q 003829 753 YCKLNQRYEAITFVNNLSKLD 773 (793)
Q Consensus 753 ~~~~g~~~~A~~~~~~~~~~~ 773 (793)
+...|++++|+..++++++.+
T Consensus 82 ~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHhC
Confidence 888888888888888888887
No 134
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.64 E-value=2e-07 Score=77.93 Aligned_cols=99 Identities=9% Similarity=0.014 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHH
Q 003829 675 SYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDG 752 (793)
Q Consensus 675 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~ 752 (793)
.+..++..+.+.|++++|...|+++++ ..| +...+..++.++...|++++|+..++++++. .| +...+..++.+
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~~~~~la~~ 94 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQ--KEPEREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAVS 94 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 455677888899999999999999998 444 5688889999999999999999999999885 45 47888899999
Q ss_pred HHccCCHHHHHHHHHHHhhCCCCCC
Q 003829 753 YCKLNQRYEAITFVNNLSKLDPHVT 777 (793)
Q Consensus 753 ~~~~g~~~~A~~~~~~~~~~~~~~~ 777 (793)
|.+.|++++|+..++++++.+|+..
T Consensus 95 ~~~~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 95 HTNEHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHC------
T ss_pred HHHcCCHHHHHHHHHHHHHhCcCCC
Confidence 9999999999999999999988754
No 135
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.62 E-value=2.4e-07 Score=80.26 Aligned_cols=103 Identities=14% Similarity=0.061 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003829 673 IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDG 752 (793)
Q Consensus 673 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 752 (793)
...+..+...+...|++++|...|+++++.+.. +...|..++.+|...|++++|+..++++++.+ +.+...+..++.+
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 95 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHY-DARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHH
Confidence 345556667777777788887777777773222 45667777777777788888888888777642 2246667777777
Q ss_pred HHccCCHHHHHHHHHHHhhCCCCCC
Q 003829 753 YCKLNQRYEAITFVNNLSKLDPHVT 777 (793)
Q Consensus 753 ~~~~g~~~~A~~~~~~~~~~~~~~~ 777 (793)
|...|++++|+..++++++..|+++
T Consensus 96 ~~~~g~~~~A~~~~~~al~~~p~~~ 120 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARALAAAQP 120 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTCG
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCc
Confidence 7788888888888888777777654
No 136
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.62 E-value=5.4e-07 Score=77.38 Aligned_cols=102 Identities=11% Similarity=0.009 Sum_probs=70.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003829 672 DIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVD 751 (793)
Q Consensus 672 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 751 (793)
+...|..++..+...|++++|...|+++++.... +...+..++.+|...|++++|+..++++++.+ +.+...+..++.
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHH
Confidence 4566667777777777777777777777763222 35667777777777777777777777777642 224666777777
Q ss_pred HHHccCCHHHHHHHHHHHhhCCCC
Q 003829 752 GYCKLNQRYEAITFVNNLSKLDPH 775 (793)
Q Consensus 752 ~~~~~g~~~~A~~~~~~~~~~~~~ 775 (793)
+|...|++++|+..++++++..|+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHChh
Confidence 777777777777777777777665
No 137
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.62 E-value=1.3e-06 Score=77.95 Aligned_cols=130 Identities=12% Similarity=0.041 Sum_probs=108.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003829 604 PTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAY 683 (793)
Q Consensus 604 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 683 (793)
..+..++..+...|++++|...|++..+.. +.+..++..+..++...|++++|+..+++..+.. +.+...|..++.++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 456778888999999999999999998864 5678899999999999999999999999999863 44678899999999
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHhcCChHHHHHHHHHHHH
Q 003829 684 CRNGRMKEASRIFSEMRDSGLVPDVITY--NTFVASYAADSLFVEALDVVRYMIK 736 (793)
Q Consensus 684 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~ 736 (793)
...|++++|..+|+++.+.... +...+ ..++..+...|++++|+..+++..+
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 9999999999999999984322 44455 3444447788999999999988753
No 138
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.61 E-value=1.9e-05 Score=77.93 Aligned_cols=167 Identities=8% Similarity=-0.027 Sum_probs=78.3
Q ss_pred hHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-CCCHHHHHHH
Q 003829 189 VSVAASLLHGLHKDGFDIDVYAYTSLITTYASNG-RYREAVMVFKKMEEEGCKPTLITYNVILNVYGKM-GMPWNKIMAL 266 (793)
Q Consensus 189 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~-g~~~~~a~~~ 266 (793)
.++|+++++.++...+. +..+|+.-..++...| .+++++.+++.+....++ +..+|+--...+.+. +.+.++++++
T Consensus 70 se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~~EL~~ 147 (349)
T 3q7a_A 70 SERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDPVSEIEY 147 (349)
T ss_dssp SHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCHHHHHH
T ss_pred CHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 34555666665555443 4555666555555555 366666666666655432 455555554444443 2134555555
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHcCCCHH--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-------hH
Q 003829 267 VEGMKSAGVKPDSYTFNTLISCCRRGSLHE--------EAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRR-------PK 331 (793)
Q Consensus 267 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~--------~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~-------~~ 331 (793)
++++.+...+ |..+|+.-.-.+.+.|.++ ++.+.++++.+... -|...|+....++.+.++ ++
T Consensus 148 ~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp-~N~SAW~~R~~lL~~l~~~~~~~~~~~ 225 (349)
T 3q7a_A 148 IHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDG-RNNSAWGWRWYLRVSRPGAETSSRSLQ 225 (349)
T ss_dssp HHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHTTSTTCCCCHHHHH
T ss_pred HHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccccchHHHH
Confidence 5555554333 4444444333333222222 44555555554432 244444444444444443 34
Q ss_pred HHHHHHHHHHHcCCCCChhHHHHHHHHHH
Q 003829 332 EAMQVLREMKINGCLPSIVTYNSLISAYA 360 (793)
Q Consensus 332 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 360 (793)
++++.++++... .+-|...|+-+-..+.
T Consensus 226 eELe~~~~aI~~-~P~n~SaW~Ylr~Ll~ 253 (349)
T 3q7a_A 226 DELIYILKSIHL-IPHNVSAWNYLRGFLK 253 (349)
T ss_dssp HHHHHHHHHHHH-CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHHHHH
Confidence 444444444443 2223444444333333
No 139
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.61 E-value=2.8e-05 Score=76.77 Aligned_cols=222 Identities=9% Similarity=0.022 Sum_probs=152.0
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC-C-CHHHH
Q 003829 221 NGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRG-S-LHEEA 298 (793)
Q Consensus 221 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-~-~~~~A 298 (793)
.+..++|++++++++..++. +..+|+.-...+...|..+++++++++.+....++ +..+|+.-...+.+. + +++++
T Consensus 67 ~e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~~E 144 (349)
T 3q7a_A 67 EEKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDPVSE 144 (349)
T ss_dssp TCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCHHH
T ss_pred CCCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCChHHH
Confidence 34457899999999988643 67788888888888874599999999999988766 677787777666665 6 78899
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH--------HHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC------
Q 003829 299 AGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPK--------EAMQVLREMKINGCLPSIVTYNSLISAYARDGL------ 364 (793)
Q Consensus 299 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~--------~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~------ 364 (793)
..+++.+.+.. +.+..+|+.-..++.+.|.++ ++++.++++.+.. +.|..+|+.....+.+.+.
T Consensus 145 L~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~ 222 (349)
T 3q7a_A 145 IEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSR 222 (349)
T ss_dssp HHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHH
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchH
Confidence 99999998764 336667766655555555555 8888888888863 4477788887777777775
Q ss_pred -HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH--------------------HHHHHHHHHHHHCC-----CCCC
Q 003829 365 -LEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKD--------------------ESAMKVFEEMRSAG-----CKPN 418 (793)
Q Consensus 365 -~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~--------------------~~a~~~~~~~~~~~-----~~~~ 418 (793)
++++++.+++++... +-|...++-+-..+.+.|+. ....+...++...+ -.+.
T Consensus 223 ~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 301 (349)
T 3q7a_A 223 SLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPV 301 (349)
T ss_dssp HHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCC
T ss_pred HHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCc
Confidence 688888888888764 45777777666666655543 22222222222211 0234
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003829 419 ICTFNALIKMHGNRGNFVEMMKVFDEINK 447 (793)
Q Consensus 419 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 447 (793)
......+++.|...|+.++|.++++.+.+
T Consensus 302 ~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 302 PLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 55666666666666666666666666643
No 140
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.60 E-value=5.8e-06 Score=81.81 Aligned_cols=131 Identities=9% Similarity=-0.011 Sum_probs=101.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCC---CCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHHC--CCCCC----HH
Q 003829 606 LNAMISIYGRRQMVAKTNEILHFMNDSGF---TPS--LTTYNTLMYMYSRSENFARAEDVLREILAK--GIKPD----II 674 (793)
Q Consensus 606 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~----~~ 674 (793)
+..+...+...|++++|...+++..+... .+. ..+++.+...|...|++++|+..++++.+. ..+.+ ..
T Consensus 118 ~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~ 197 (293)
T 2qfc_A 118 QYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVK 197 (293)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHH
Confidence 34456667788899999999998875421 112 457889999999999999999999998832 01111 25
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCChHHH-HHHHHHHHH
Q 003829 675 SYNTVIFAYCRNGRMKEASRIFSEMRDS----GLVPD-VITYNTFVASYAADSLFVEA-LDVVRYMIK 736 (793)
Q Consensus 675 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 736 (793)
++..++.+|...|++++|..+++++++. +.... ..+|..++.+|...|++++| ...++++++
T Consensus 198 ~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 198 VRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 8889999999999999999999998862 11111 57889999999999999999 777888764
No 141
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.60 E-value=1.1e-06 Score=74.43 Aligned_cols=116 Identities=14% Similarity=0.079 Sum_probs=53.2
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003829 640 TYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYA 719 (793)
Q Consensus 640 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 719 (793)
.+..++..+...|++++|...++++.... +.+...+..++.++...|++++|.+.++++.+.... +...+..++.+|.
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA-YSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc-CHHHHHHHHHHHH
Confidence 34444444444555555555555544431 223444444555555555555555555555442111 2344445555555
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 003829 720 ADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQ 758 (793)
Q Consensus 720 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 758 (793)
..|++++|+..++++++.. +.+...+..++.++.+.|+
T Consensus 92 ~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTT
T ss_pred HhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhc
Confidence 5555555555555554431 1134444444444444443
No 142
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.60 E-value=4.8e-07 Score=74.29 Aligned_cols=104 Identities=13% Similarity=0.074 Sum_probs=85.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--CHHHHHHH
Q 003829 672 DIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP--NQNTYNSI 749 (793)
Q Consensus 672 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l 749 (793)
+...+..++..+...|++++|...++++.+.... +...+..++.++...|++++|++.++++++.. +. +...+..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l 82 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPE-ESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAK 82 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHH
Confidence 3556777888888899999999999998884322 56788888999999999999999999998752 33 57788899
Q ss_pred HHHHHcc-CCHHHHHHHHHHHhhCCCCCC
Q 003829 750 VDGYCKL-NQRYEAITFVNNLSKLDPHVT 777 (793)
Q Consensus 750 ~~~~~~~-g~~~~A~~~~~~~~~~~~~~~ 777 (793)
+.++.+. |++++|.+.++++++..|.++
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 9999999 999999999999999988754
No 143
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.59 E-value=9.9e-07 Score=89.04 Aligned_cols=132 Identities=8% Similarity=-0.036 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC--------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 003829 638 LTTYNTLMYMYSRSENFARAEDVLREILAKGIKPD--------------IISYNTVIFAYCRNGRMKEASRIFSEMRDSG 703 (793)
Q Consensus 638 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 703 (793)
...+..+...|.+.|++++|+..|+++++...... ...|..+..+|.+.|++++|...++++++.
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~- 225 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL- 225 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence 44555566666666666666666666665421110 367777888888888888888888888873
Q ss_pred CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHH-HHHHHHHhhC
Q 003829 704 LVP-DVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEA-ITFVNNLSKL 772 (793)
Q Consensus 704 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~~ 772 (793)
.| +...|..++.+|...|++++|+..|+++++.. +.+...+..++.++.+.|++++| ...+++|++.
T Consensus 226 -~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 226 -DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANMFER 294 (336)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33 45777788888888888888888888887742 22467777788888888888777 4566666543
No 144
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.59 E-value=2e-06 Score=72.16 Aligned_cols=101 Identities=17% Similarity=0.273 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003829 674 ISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGY 753 (793)
Q Consensus 674 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 753 (793)
..|..++..+...|++++|.++++++.+... .+..++..++.++...|++++|+.+++++++.+ +.+..++..++..+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence 4455555555566666666666666555221 134555555666666666666666666665532 22355555666666
Q ss_pred HccCCHHHHHHHHHHHhhCCCCC
Q 003829 754 CKLNQRYEAITFVNNLSKLDPHV 776 (793)
Q Consensus 754 ~~~g~~~~A~~~~~~~~~~~~~~ 776 (793)
...|++++|..+++++++.+|++
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~ 110 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNN 110 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHhcCHHHHHHHHHHHHHhCCCc
Confidence 66666666666666666665553
No 145
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.59 E-value=8.3e-07 Score=74.52 Aligned_cols=117 Identities=12% Similarity=0.177 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003829 638 LTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVAS 717 (793)
Q Consensus 638 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 717 (793)
...+..+...+...|++++|.+.++++.+.. +.+..++..++.++...|++++|..+++++.+.... +..++..++.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHH
Confidence 6678889999999999999999999999863 446788999999999999999999999999984322 56888999999
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 003829 718 YAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLN 757 (793)
Q Consensus 718 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 757 (793)
|...|++++|...++++++.. +.+...+..++..+.+.|
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHhcc
Confidence 999999999999999998853 334677777777665543
No 146
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.59 E-value=1.1e-06 Score=72.98 Aligned_cols=104 Identities=14% Similarity=0.053 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003829 673 IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDG 752 (793)
Q Consensus 673 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 752 (793)
...+..++..+...|++++|...|+++.+.... +...+..++.++...|++++|+..++++++.. +.+...+..++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 456777788888888888888888888873222 56778888888888888999988888888752 3357788888888
Q ss_pred HHccCCHHHHHHHHHHHhhCCCCCCH
Q 003829 753 YCKLNQRYEAITFVNNLSKLDPHVTK 778 (793)
Q Consensus 753 ~~~~g~~~~A~~~~~~~~~~~~~~~~ 778 (793)
+...|++++|...++++++.+|++..
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~~~~~~~ 107 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKHEANNPQ 107 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHH
T ss_pred HHHHhhHHHHHHHHHHHHHcCCCCHH
Confidence 88899999999999999888887544
No 147
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.58 E-value=2.6e-07 Score=79.14 Aligned_cols=104 Identities=13% Similarity=0.015 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--------H-----HHHHHHHHHHHhcCChHHHHHHHHHHHHc---
Q 003829 674 ISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPD--------V-----ITYNTFVASYAADSLFVEALDVVRYMIKQ--- 737 (793)
Q Consensus 674 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--------~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--- 737 (793)
..+...+..+...|++++|...|+++++ +.|+ . ..|..++.++.+.|++++|+..++++++.
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~--l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~ 89 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAME--ISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 89 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHH--HHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHh--hCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 3455666777788888888888888887 3443 2 38899999999999999999999999873
Q ss_pred --CCCCC-HHHH----HHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHH
Q 003829 738 --GCKPN-QNTY----NSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKE 779 (793)
Q Consensus 738 --~~~p~-~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 779 (793)
.+.|+ ...| ...+.++...|++++|+..|++++++.|++..+
T Consensus 90 ~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 90 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred cccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 11676 6788 899999999999999999999999998876543
No 148
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.58 E-value=8.2e-07 Score=75.66 Aligned_cols=104 Identities=14% Similarity=0.107 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003829 673 IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDG 752 (793)
Q Consensus 673 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 752 (793)
...|..++..+...|++++|.+.|+++.+.... +...+..++.+|...|++++|++.++++++.. +.+...+..++.+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 93 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK-DAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHH
Confidence 445555555555666666666666665552211 34555555556666666666666666655531 2235555556666
Q ss_pred HHccCCHHHHHHHHHHHhhCCCCCCH
Q 003829 753 YCKLNQRYEAITFVNNLSKLDPHVTK 778 (793)
Q Consensus 753 ~~~~g~~~~A~~~~~~~~~~~~~~~~ 778 (793)
+.+.|++++|+..++++++.+|++..
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~p~~~~ 119 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLDSSCKE 119 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCGGGTH
T ss_pred HHHHhhHHHHHHHHHHHHHhCCCchH
Confidence 66666666666666666666555433
No 149
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.58 E-value=7.3e-07 Score=75.97 Aligned_cols=121 Identities=11% Similarity=0.036 Sum_probs=102.1
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 003829 635 TPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTF 714 (793)
Q Consensus 635 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 714 (793)
+.+...+..+...+...|++++|+..++++.+.. +.+...+..++.+|...|++++|.++++++.+.... +...+..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l 90 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIKGYTRK 90 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chHHHHHH
Confidence 4567778899999999999999999999999863 346788999999999999999999999999984322 56889999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 003829 715 VASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQ 758 (793)
Q Consensus 715 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 758 (793)
+.+|...|++++|++.++++++.. +.+...+..+..++.+.|+
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhcC
Confidence 999999999999999999998752 2246777788888777664
No 150
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.57 E-value=4.8e-07 Score=81.88 Aligned_cols=121 Identities=7% Similarity=0.093 Sum_probs=101.2
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHHcCCH--H
Q 003829 614 GRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFA-YCRNGRM--K 690 (793)
Q Consensus 614 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~--~ 690 (793)
...|++++|...+++..+.. +.+...+..+..+|...|++++|+..|+++.+.. +.+...+..++.+ +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchH
Confidence 45688999999999988764 6688899999999999999999999999999863 3467788888888 7899998 9
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003829 691 EASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQ 737 (793)
Q Consensus 691 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 737 (793)
+|..+++++++.... +...+..++.+|...|++++|+..++++++.
T Consensus 99 ~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 99 QTRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 999999999984322 4688899999999999999999999999984
No 151
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.57 E-value=3.8e-07 Score=79.40 Aligned_cols=109 Identities=11% Similarity=0.014 Sum_probs=88.3
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 003829 625 ILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGL 704 (793)
Q Consensus 625 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 704 (793)
.|+++.+.. +.+...+..+...+...|++++|+..|++++... +.+...|..+..+|...|++++|...|+++++ .
T Consensus 9 ~~~~al~~~-p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l 84 (148)
T 2vgx_A 9 TIAMLNEIS-SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAV--M 84 (148)
T ss_dssp SHHHHTTCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--H
T ss_pred hHHHHHcCC-HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--c
Confidence 344444432 3355667778888999999999999999998863 44678888999999999999999999999998 4
Q ss_pred CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003829 705 VP-DVITYNTFVASYAADSLFVEALDVVRYMIKQ 737 (793)
Q Consensus 705 ~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 737 (793)
.| +...+..++.+|...|++++|+..|+++++.
T Consensus 85 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 85 DIXEPRFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 44 4578888999999999999999999999874
No 152
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.56 E-value=5.4e-07 Score=88.44 Aligned_cols=165 Identities=6% Similarity=-0.088 Sum_probs=114.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003829 602 DIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIF 681 (793)
Q Consensus 602 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 681 (793)
+...+..++..+...|++++|...|++..+.. +.+...|..+..+|.+.|++++|+..++++++.. +.+...+..++.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 45677788889999999999999999999874 5588899999999999999999999999999863 345788999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHH
Q 003829 682 AYCRNGRMKEASRIFSEMRDSGLVPDV-ITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRY 760 (793)
Q Consensus 682 ~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 760 (793)
+|...|++++|...|+++.+. .|+. ..+...+....+. .++... ....+.-...+..+...+... ..|+++
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~i~~~l~~l--~~~~~~ 152 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSL--AKEQRLNFGDDIPSALRI---AKKKRW-NSIEERRIHQESELHSYLTRL--IAAERE 152 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--HHHTTCCCCSHHHHHHHH---HHHHHH-HHHHHTCCCCCCHHHHHHHHH--HHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CccchhhHHHHHHHHHHH---HHHHHH-HHHHHHHHhhhHHHHHHHHHH--HHHHHH
Confidence 999999999999999999873 2211 1111111111111 111111 112222233444444444332 257777
Q ss_pred HHHHHHHHHhhCCCCC
Q 003829 761 EAITFVNNLSKLDPHV 776 (793)
Q Consensus 761 ~A~~~~~~~~~~~~~~ 776 (793)
+|++.++++++.+|++
T Consensus 153 ~A~~~~~~al~~~p~~ 168 (281)
T 2c2l_A 153 RELEECQRNHEGHEDD 168 (281)
T ss_dssp HHHTTTSGGGTTTSCH
T ss_pred HHHHHHHhhhccccch
Confidence 7777777777776653
No 153
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.55 E-value=4.9e-05 Score=74.70 Aligned_cols=180 Identities=10% Similarity=0.075 Sum_probs=136.7
Q ss_pred CCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC-HHHHHHHHHHHHHCCCCCCHHHH
Q 003829 600 SPDIPTLNAMISIYGRRQ--MVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSEN-FARAEDVLREILAKGIKPDIISY 676 (793)
Q Consensus 600 ~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~ 676 (793)
+-+..+|+.-...+.+.+ .+++++.+++.+.+.. +-|..+|+.-..++...|. ++++++.++++++.. +-|...|
T Consensus 105 PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW 182 (331)
T 3dss_A 105 PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSW 182 (331)
T ss_dssp TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHH
T ss_pred CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHH
Confidence 457778888777777777 4899999999999876 6788888888888888888 699999999999875 4477788
Q ss_pred HHHHHHHHHc--------------CCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhc-----------CChHHHHHH
Q 003829 677 NTVIFAYCRN--------------GRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAAD-----------SLFVEALDV 730 (793)
Q Consensus 677 ~~l~~~~~~~--------------g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~-----------g~~~~A~~~ 730 (793)
+.....+... +.++++++++++++. ..| |...|+.+-..+... +.++++++.
T Consensus 183 ~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~--~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~ 260 (331)
T 3dss_A 183 HYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFF--TDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELES 260 (331)
T ss_dssp HHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHH
Confidence 8877777665 458899999999998 444 667777666666655 457899999
Q ss_pred HHHHHHcCCCCC-HHHHHHHHH---HHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 003829 731 VRYMIKQGCKPN-QNTYNSIVD---GYCKLNQRYEAITFVNNLSKLDPHVTKELECKLSD 786 (793)
Q Consensus 731 ~~~~~~~~~~p~-~~~~~~l~~---~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 786 (793)
++++++ ..|| ..++..++. .....|..++...++.++.+.+|- -...|..+.+
T Consensus 261 ~~elle--~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~-r~~~y~d~~~ 317 (331)
T 3dss_A 261 CKELQE--LEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPM-RAAYLDDLRS 317 (331)
T ss_dssp HHHHHH--HCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGG-GHHHHHHHHH
T ss_pred HHHHHh--hCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcc-hhhHHHHHHH
Confidence 999998 4566 333323222 223568889999999999999987 4445555444
No 154
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.54 E-value=9.2e-07 Score=74.58 Aligned_cols=108 Identities=10% Similarity=0.113 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC--CCC----HHHHH
Q 003829 639 TTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGL--VPD----VITYN 712 (793)
Q Consensus 639 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~p~----~~~~~ 712 (793)
..+..++..+.+.|++++|+..|++.++.. +.+...|..++.+|...|++++|++.++++++.+. .++ ..+|.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 345667777788888888888888887753 33466777888888888888888888888776211 111 14677
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003829 713 TFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSI 749 (793)
Q Consensus 713 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 749 (793)
.++.++...|++++|++.|++.++ ..||..+...|
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~--~~~~~~~~~~l 122 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLS--EFRDPELVKKV 122 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--HSCCHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh--hCcCHHHHHHH
Confidence 788888888888888888888876 35666554443
No 155
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.52 E-value=6.1e-05 Score=74.03 Aligned_cols=167 Identities=5% Similarity=0.007 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHhccCCCCCccchHHHHHHHHHHHHhcCC----------hHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 003829 150 DLALDVFEWFRSCCSKDGNLVLRGSVIAVLISMLGKEGK----------VSVAASLLHGLHKDGFDIDVYAYTSLITTYA 219 (793)
Q Consensus 150 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 219 (793)
++|+.++..+.. .+|. +..+|+.--.++...++ ++++..+++.++...+. +..+|+.-..++.
T Consensus 47 ~eaL~~t~~~L~---~nP~---~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK-ny~aW~hR~wlL~ 119 (331)
T 3dss_A 47 ESVLELTSQILG---ANPD---FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLS 119 (331)
T ss_dssp HHHHHHHHHHHT---TCTT---CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---HCch---hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHh
Confidence 367777777766 3333 44555555555544433 56777777777766554 6777777777777
Q ss_pred HcCC--HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC-----
Q 003829 220 SNGR--YREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRG----- 292 (793)
Q Consensus 220 ~~g~--~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----- 292 (793)
+.|+ +++++.+++++.+..+ -|..+|+--.-++...|..++++++.++++.+..+. |..+|+.....+.+.
T Consensus 120 ~l~~~~~~~EL~~~~k~l~~dp-rNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~ 197 (331)
T 3dss_A 120 RLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPD 197 (331)
T ss_dssp HCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHHSCCC-
T ss_pred ccCcccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhhhccc
Confidence 7763 7777888887777653 366777776666666662257777777777776554 566666555444433
Q ss_pred ---------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 003829 293 ---------SLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGK 326 (793)
Q Consensus 293 ---------~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 326 (793)
+.++++.+.+....... +-|...|+-+-..+.+
T Consensus 198 ~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~ 239 (331)
T 3dss_A 198 SGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGA 239 (331)
T ss_dssp -----CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHS
T ss_pred cccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 23555666666555542 2245555444333333
No 156
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.52 E-value=2.6e-06 Score=74.09 Aligned_cols=103 Identities=11% Similarity=0.025 Sum_probs=70.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 003829 672 DIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPD----VITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYN 747 (793)
Q Consensus 672 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 747 (793)
+...+..++..+...|++++|...|+++++ ..|+ ...+..++.+|...|++++|+..++++++.. +.+...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALG--LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHT--SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence 355666666677777777777777777776 4444 4566677777777777777777777776642 22466677
Q ss_pred HHHHHHHccCCHHHHHHHHHHHhhCCCCCC
Q 003829 748 SIVDGYCKLNQRYEAITFVNNLSKLDPHVT 777 (793)
Q Consensus 748 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 777 (793)
.++.+|...|++++|...++++++.+|++.
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~ 133 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNK 133 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 777777777777777777777777777643
No 157
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.51 E-value=2.7e-06 Score=72.04 Aligned_cols=120 Identities=8% Similarity=-0.032 Sum_probs=102.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003829 602 DIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIF 681 (793)
Q Consensus 602 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 681 (793)
+...+..++..+...|++++|...+++..+.. +.+...+..+..++...|++++|+..+++..... +.+...+..++.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHH
Confidence 34567788889999999999999999998864 5678889999999999999999999999999863 445788999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 003829 682 AYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLF 724 (793)
Q Consensus 682 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 724 (793)
++...|++++|..+|+++.+.... +...+..++.++...|++
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELDPD-NETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTTC
T ss_pred HHHHhCCHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHhcC
Confidence 999999999999999999984322 567888888888888775
No 158
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.50 E-value=8.8e-07 Score=78.70 Aligned_cols=103 Identities=13% Similarity=0.029 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHC--------CC--------CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003829 674 ISYNTVIFAYCRNGRMKEASRIFSEMRDS--------GL--------VP-DVITYNTFVASYAADSLFVEALDVVRYMIK 736 (793)
Q Consensus 674 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~--------~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 736 (793)
..+...+..+.+.|++++|...|+++++. .. .| +...|..++.+|.+.|++++|+..++++++
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 34455556666666666666666666652 00 22 235778888888888888888888888887
Q ss_pred cCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCC
Q 003829 737 QGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVT 777 (793)
Q Consensus 737 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 777 (793)
.+ +.+...|..++.+|...|++++|+..++++++.+|++.
T Consensus 92 ~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 92 RE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp HS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred cC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 42 22477888888888888888888888888888888866
No 159
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.48 E-value=2.8e-06 Score=71.54 Aligned_cols=97 Identities=14% Similarity=0.085 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 003829 638 LTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVA 716 (793)
Q Consensus 638 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~ 716 (793)
...+..+...+.+.|++++|+..|++.++.. +.+...|..++.+|...|++++|...++++++ +.| +...|..++.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~ 80 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIE--KDPNFVRAYIRKAT 80 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCcHHHHHHHHH
Confidence 3456667777888888888888888888763 33577888888888888888888888888888 344 4577888888
Q ss_pred HHHhcCChHHHHHHHHHHHHc
Q 003829 717 SYAADSLFVEALDVVRYMIKQ 737 (793)
Q Consensus 717 ~~~~~g~~~~A~~~~~~~~~~ 737 (793)
+|...|++++|+..++++++.
T Consensus 81 ~~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 81 AQIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHh
Confidence 888888888888888888763
No 160
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.47 E-value=2e-06 Score=84.36 Aligned_cols=99 Identities=10% Similarity=0.033 Sum_probs=87.6
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHH
Q 003829 636 PSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP-DVITYNTF 714 (793)
Q Consensus 636 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l 714 (793)
.+...+..+...+...|++++|+..|+++++.. +.+...|..++.+|...|++++|...++++++ ..| +...+..+
T Consensus 2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l 78 (281)
T 2c2l_A 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFFL 78 (281)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHH
Confidence 356778888999999999999999999999863 33688899999999999999999999999998 444 56889999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHc
Q 003829 715 VASYAADSLFVEALDVVRYMIKQ 737 (793)
Q Consensus 715 ~~~~~~~g~~~~A~~~~~~~~~~ 737 (793)
+.+|...|++++|+..++++++.
T Consensus 79 g~~~~~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 79 GQCQLEMESYDEAIANLQRAYSL 101 (281)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999999999873
No 161
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.45 E-value=3e-06 Score=78.14 Aligned_cols=131 Identities=12% Similarity=-0.041 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 003829 639 TTYNTLMYMYSRSENFARAEDVLREILAKGIKPD----------------IISYNTVIFAYCRNGRMKEASRIFSEMRDS 702 (793)
Q Consensus 639 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 702 (793)
..+..+...+...|++++|+..|++.++.. +.+ ...|..+..+|...|++++|...++++++.
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 345555666666777777777777776542 112 267788888888889999999999988884
Q ss_pred CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHH-HHHHHHhhCC
Q 003829 703 GLVP-DVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAI-TFVNNLSKLD 773 (793)
Q Consensus 703 ~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~ 773 (793)
.| +...+..++.+|...|++++|++.++++++.. +.+...+..+..++...|+.+++. ..++.+...+
T Consensus 118 --~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 118 --DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp --STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC-------------
T ss_pred --CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 34 56788888888999999999999999988742 224777888888888888877776 5566665543
No 162
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.44 E-value=4.5e-06 Score=79.55 Aligned_cols=126 Identities=15% Similarity=0.067 Sum_probs=75.7
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--hhHHHHHHHHHHhc
Q 003829 285 LISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPS--IVTYNSLISAYARD 362 (793)
Q Consensus 285 l~~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~ 362 (793)
+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|. ...+..+..++...
T Consensus 108 yA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~L 184 (282)
T 4f3v_A 108 FAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAANL 184 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHHC
Confidence 4445666677777777776666543 333355555566777777777777776443321 111 22556666777777
Q ss_pred CCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 003829 363 GLLEEAMELKTQMVEIGITPD--VFTYTTLLSGFEKAGKDESAMKVFEEMRSA 413 (793)
Q Consensus 363 g~~~~A~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 413 (793)
|++++|+..|++.......|. .........++.+.|+.++|..+|+++...
T Consensus 185 G~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 185 ALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp TCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 777777777777664332133 224445555666777777777777777665
No 163
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.43 E-value=1.7e-06 Score=73.28 Aligned_cols=100 Identities=17% Similarity=0.111 Sum_probs=67.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC---HHHHHHHH
Q 003829 677 NTVIFAYCRNGRMKEASRIFSEMRDSGLVPDV---ITYNTFVASYAADSLFVEALDVVRYMIKQGCKPN---QNTYNSIV 750 (793)
Q Consensus 677 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~ 750 (793)
..++..+...|++++|...|+++.+.... +. ..+..++.++...|++++|+..++++++.. +.+ ...+..++
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la 83 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHH
Confidence 34556667777777777777777763221 12 466677777777777777777777777642 222 45567777
Q ss_pred HHHHccCCHHHHHHHHHHHhhCCCCCCH
Q 003829 751 DGYCKLNQRYEAITFVNNLSKLDPHVTK 778 (793)
Q Consensus 751 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 778 (793)
.++.+.|++++|+..++++++..|+++.
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 111 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQYPGSDA 111 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTSHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCChH
Confidence 7777778888888888877777776544
No 164
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.43 E-value=4.1e-06 Score=84.51 Aligned_cols=130 Identities=9% Similarity=-0.027 Sum_probs=112.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---------------HHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 003829 603 IPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPS---------------LTTYNTLMYMYSRSENFARAEDVLREILAK 667 (793)
Q Consensus 603 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 667 (793)
...+..+...+.+.|++++|...|++..+.. +.+ ...|..+..+|.+.|++++|+..++++++.
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWL-EYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh-hccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4577888899999999999999999999874 333 588999999999999999999999999987
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHH-HHHHHHHHH
Q 003829 668 GIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSLFVEA-LDVVRYMIK 736 (793)
Q Consensus 668 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 736 (793)
. +.+...|..+..+|...|++++|...|+++++ +.| +...+..+..++...|++++| ...+++|.+
T Consensus 226 ~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 226 D-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQ--LYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 44688999999999999999999999999999 455 568889999999999999998 557777753
No 165
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.43 E-value=1.2e-06 Score=75.61 Aligned_cols=99 Identities=8% Similarity=-0.092 Sum_probs=80.2
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003829 637 SLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVA 716 (793)
Q Consensus 637 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 716 (793)
+...+..+...+.+.|++++|+..|++++..+ +.+...|..+..+|...|++++|...|+++++.+.. +...+..++.
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 94 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHH
Confidence 44556667778888999999999999988763 346778888889999999999999999999884322 4577888899
Q ss_pred HHHhcCChHHHHHHHHHHHHc
Q 003829 717 SYAADSLFVEALDVVRYMIKQ 737 (793)
Q Consensus 717 ~~~~~g~~~~A~~~~~~~~~~ 737 (793)
+|...|++++|+..++++++.
T Consensus 95 ~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999998864
No 166
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.40 E-value=2.3e-06 Score=72.44 Aligned_cols=99 Identities=13% Similarity=0.172 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC--CCC----HHHHHH
Q 003829 675 SYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGC--KPN----QNTYNS 748 (793)
Q Consensus 675 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~p~----~~~~~~ 748 (793)
.|..++..+...|++++|..+|+++.+.... +...+..++.+|...|++++|+..++++++... .++ ..++..
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 4444555555555555555555555552211 344555555555555555555555555554210 111 444555
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhCCC
Q 003829 749 IVDGYCKLNQRYEAITFVNNLSKLDP 774 (793)
Q Consensus 749 l~~~~~~~g~~~~A~~~~~~~~~~~~ 774 (793)
++.++.+.|++++|...++++++..|
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~~~ 110 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAEHR 110 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 55556666666666666666665555
No 167
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.40 E-value=1.1e-05 Score=66.74 Aligned_cols=110 Identities=15% Similarity=0.045 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003829 638 LTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVAS 717 (793)
Q Consensus 638 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 717 (793)
...+..++..+...|++++|...++++.... +.+...+..++.++...|++++|...++++.+.... +...+..++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHHHHHH
Confidence 4456667777777888888888888887652 335677777788888888888888888888873222 45777788888
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHH
Q 003829 718 YAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVD 751 (793)
Q Consensus 718 ~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~ 751 (793)
+...|++++|.+.++++++. .| +...+..+..
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~ 114 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKH--EANNPQLKEGLQN 114 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHc--CCCCHHHHHHHHH
Confidence 88888888888888888764 34 3455544443
No 168
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.40 E-value=1.4e-06 Score=77.29 Aligned_cols=135 Identities=16% Similarity=0.136 Sum_probs=93.8
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----HH
Q 003829 640 TYNTLMYMYSRSENFARAEDVLREILAKGIK-PD----IISYNTVIFAYCRNGRMKEASRIFSEMRDSGL-VPD----VI 709 (793)
Q Consensus 640 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~----~~ 709 (793)
++..+...+...|++++|+..+++..+.... .+ ..++..+...+...|++++|.++++++.+... ..+ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4556666677777777777777776643100 11 24677778888888888888888888775210 011 35
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHhhCCC
Q 003829 710 TYNTFVASYAADSLFVEALDVVRYMIKQ----GCKPN-QNTYNSIVDGYCKLNQRYEAITFVNNLSKLDP 774 (793)
Q Consensus 710 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 774 (793)
.+..++.++...|++++|++.+++.++. +..+. ...+..++..+...|++++|...++++++...
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 6778888888999999999988888742 11111 45677888889999999999999998887643
No 169
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.39 E-value=3.4e-06 Score=78.16 Aligned_cols=85 Identities=13% Similarity=0.046 Sum_probs=42.7
Q ss_pred CCChHHHHHHHHHHHhccCCCCCccchHHHHHHHHHHHHhcCChHHHHHHHHHHhhC----CC-CCCHHHHHHHHHHHHH
Q 003829 146 HKKTDLALDVFEWFRSCCSKDGNLVLRGSVIAVLISMLGKEGKVSVAASLLHGLHKD----GF-DIDVYAYTSLITTYAS 220 (793)
Q Consensus 146 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~ 220 (793)
.|+++.|...++.+.. .......++..+..++...|++++|...+++.... +. .....++..+...+..
T Consensus 5 ~g~~~~A~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~ 78 (203)
T 3gw4_A 5 AHDYALAERQAQALLA------HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERM 78 (203)
T ss_dssp --CHHHHHHHHHHHHT------STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHhcC------ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 4566666664444432 11124455556666666666666666666655431 00 1123345555555666
Q ss_pred cCCHHHHHHHHHHHHH
Q 003829 221 NGRYREAVMVFKKMEE 236 (793)
Q Consensus 221 ~g~~~~A~~~~~~~~~ 236 (793)
.|++++|...|++..+
T Consensus 79 ~g~~~~A~~~~~~al~ 94 (203)
T 3gw4_A 79 AGNWDAARRCFLEERE 94 (203)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 6666666666655543
No 170
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.38 E-value=4.5e-06 Score=71.50 Aligned_cols=100 Identities=9% Similarity=0.018 Sum_probs=77.2
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 003829 635 TPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTF 714 (793)
Q Consensus 635 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 714 (793)
+.+...+..+...+...|++++|+..|++++... +.+...|..++.++...|++++|...++++++.... +...+..+
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l 83 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFL 83 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHH
Confidence 3466777778888888888888888888887753 335677888888888888888888888888874322 46778888
Q ss_pred HHHHHhcCChHHHHHHHHHHHH
Q 003829 715 VASYAADSLFVEALDVVRYMIK 736 (793)
Q Consensus 715 ~~~~~~~g~~~~A~~~~~~~~~ 736 (793)
+.+|...|++++|+..++++++
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHH
Confidence 8888888888888888888875
No 171
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.37 E-value=3.9e-06 Score=71.01 Aligned_cols=114 Identities=10% Similarity=0.110 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC--CCC----HHHH
Q 003829 638 LTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGL--VPD----VITY 711 (793)
Q Consensus 638 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~p~----~~~~ 711 (793)
...+..++..+...|++++|...++++.+.. +.+...+..++.+|...|++++|..+++++.+... .++ ..++
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 4567888899999999999999999999863 44678899999999999999999999999998422 122 6788
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003829 712 NTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYC 754 (793)
Q Consensus 712 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 754 (793)
..++.+|...|++++|.+.++++++. .|+...+..+..+..
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~ 123 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQAEK 123 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHHHHHH
Confidence 99999999999999999999999985 457666666655543
No 172
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.33 E-value=6.7e-07 Score=74.25 Aligned_cols=93 Identities=13% Similarity=0.020 Sum_probs=61.2
Q ss_pred cCCHHHHHHHHHHHHHCCC-CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHH
Q 003829 686 NGRMKEASRIFSEMRDSGL-VP-DVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAI 763 (793)
Q Consensus 686 ~g~~~~A~~~~~~~~~~~~-~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 763 (793)
.|++++|...|+++++.+. .| +...+..++.+|...|++++|+..++++++.. +.+...+..++.++.+.|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 4667777777777776321 13 23566777777777777777777777777642 224667777777777777777777
Q ss_pred HHHHHHhhCCCCCCHH
Q 003829 764 TFVNNLSKLDPHVTKE 779 (793)
Q Consensus 764 ~~~~~~~~~~~~~~~~ 779 (793)
..++++++..|+++..
T Consensus 82 ~~~~~al~~~p~~~~~ 97 (117)
T 3k9i_A 82 ELLLKIIAETSDDETI 97 (117)
T ss_dssp HHHHHHHHHHCCCHHH
T ss_pred HHHHHHHHhCCCcHHH
Confidence 7777777777766544
No 173
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.33 E-value=1.1e-05 Score=71.71 Aligned_cols=98 Identities=11% Similarity=0.059 Sum_probs=72.0
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHH
Q 003829 637 SLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFV 715 (793)
Q Consensus 637 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~ 715 (793)
+...+..+...+...|++++|+..|++.++.. +.+...|..+..+|...|++++|...|+++++ +.| +...|..++
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg 86 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATV--VDPKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHH
Confidence 34556667777777788888888888777753 33566777777888888888888888888877 334 457777788
Q ss_pred HHHHhcCChHHHHHHHHHHHHc
Q 003829 716 ASYAADSLFVEALDVVRYMIKQ 737 (793)
Q Consensus 716 ~~~~~~g~~~~A~~~~~~~~~~ 737 (793)
.+|...|++++|+..++++++.
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHh
Confidence 8888888888888888887763
No 174
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.33 E-value=2e-05 Score=68.28 Aligned_cols=112 Identities=9% Similarity=-0.010 Sum_probs=82.2
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHH
Q 003829 635 TPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPD----IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP-DVI 709 (793)
Q Consensus 635 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~ 709 (793)
+.+...+..+...+...|++++|+..|++..+. .|+ ...|..+..+|...|++++|...++++++. .| +..
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~ 100 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK--DGGDVK 100 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TSCCHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--CccCHH
Confidence 345666777777788888888888888888774 344 567777888888888888888888888873 33 457
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHH
Q 003829 710 TYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDG 752 (793)
Q Consensus 710 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~ 752 (793)
.+..++.+|...|++++|+..++++++. .| +...+..+...
T Consensus 101 ~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~ 142 (148)
T 2dba_A 101 ALYRRSQALEKLGRLDQAVLDLQRCVSL--EPKNKVFQEALRNI 142 (148)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHH
Confidence 7788888888888888888888888774 34 35555554443
No 175
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.31 E-value=1.4e-06 Score=87.87 Aligned_cols=154 Identities=6% Similarity=-0.124 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003829 603 IPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFA 682 (793)
Q Consensus 603 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 682 (793)
...+..+...+.+.|++++|...|++..+.. |+... +...|+.+++...+. ...|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 4456666667777777777777777766542 33221 223333343332221 1378889999
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHH-HHccCCH
Q 003829 683 YCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPN-QNTYNSIVDG-YCKLNQR 759 (793)
Q Consensus 683 ~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~-~~~~g~~ 759 (793)
|.+.|++++|+..++++++ ..| +...|..++.+|...|++++|+..|+++++ +.|+ ...+..+... ....+..
T Consensus 240 ~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~--l~p~~~~a~~~L~~l~~~~~~~~ 315 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLT--EEEKNPKALFRRGKAKAELGQMDSARDDFRKAQK--YAPDDKAIRRELRALAEQEKALY 315 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------
T ss_pred HHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998 444 568899999999999999999999999986 3454 5666666665 3455778
Q ss_pred HHHHHHHHHHhhCCCCCCHH
Q 003829 760 YEAITFVNNLSKLDPHVTKE 779 (793)
Q Consensus 760 ~~A~~~~~~~~~~~~~~~~~ 779 (793)
+++..+++++++..|+++..
T Consensus 316 ~~a~~~~~~~l~~~p~~~~~ 335 (338)
T 2if4_A 316 QKQKEMYKGIFKGKDEGGAK 335 (338)
T ss_dssp --------------------
T ss_pred HHHHHHHHHhhCCCCCCCCC
Confidence 88999999999999886543
No 176
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.29 E-value=2.5e-06 Score=90.51 Aligned_cols=117 Identities=18% Similarity=0.117 Sum_probs=78.6
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCh
Q 003829 646 YMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSLF 724 (793)
Q Consensus 646 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~ 724 (793)
..+.+.|++++|++.++++++.. +.+...|..++.+|.+.|++++|.+.++++++. .| +...+..++.+|...|++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCH
Confidence 34556777777777777777652 334667777777788888888888888888773 34 456777777788888888
Q ss_pred HHHHHHHHHHHHcCCCC-CHHHHHHHHHH--HHccCCHHHHHHHHH
Q 003829 725 VEALDVVRYMIKQGCKP-NQNTYNSIVDG--YCKLNQRYEAITFVN 767 (793)
Q Consensus 725 ~~A~~~~~~~~~~~~~p-~~~~~~~l~~~--~~~~g~~~~A~~~~~ 767 (793)
++|++.++++++. .| +...+..+..+ +.+.|++++|++.++
T Consensus 91 ~eA~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVKV--KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHH--STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 8888888887764 33 34455555555 677788888888877
No 177
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.27 E-value=8e-06 Score=66.77 Aligned_cols=98 Identities=11% Similarity=-0.002 Sum_probs=77.1
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---HHHHHH
Q 003829 637 SLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPD---VITYNT 713 (793)
Q Consensus 637 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~ 713 (793)
+...+..+...+...|++++|...++++.+.. +.+...|..++.++...|++++|...++++++. .|+ ...+..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~ 81 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINV--IEDEYNKDVWAA 81 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--SCCTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CcccchHHHHHH
Confidence 44556677777888888888888888888763 345677888888888888888888888888883 443 577888
Q ss_pred HHHHHHhc-CChHHHHHHHHHHHHc
Q 003829 714 FVASYAAD-SLFVEALDVVRYMIKQ 737 (793)
Q Consensus 714 l~~~~~~~-g~~~~A~~~~~~~~~~ 737 (793)
++.++... |++++|++.++++++.
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhc
Confidence 88888888 8888888888888764
No 178
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.26 E-value=1.3e-05 Score=73.83 Aligned_cols=129 Identities=12% Similarity=0.037 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----------------HHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 003829 604 PTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSL----------------TTYNTLMYMYSRSENFARAEDVLREILAK 667 (793)
Q Consensus 604 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 667 (793)
..+..+...+...|++++|...|++..+.. +.+. ..+..+..+|...|++++|+..++++++.
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 456677888999999999999999999863 2232 78888999999999999999999999986
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHH-HHHHHHHH
Q 003829 668 GIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSLFVEAL-DVVRYMIK 736 (793)
Q Consensus 668 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~ 736 (793)
. +.+...+..++.+|...|++++|.+.|+++++ +.| +..++..+..++...++.+++. ..+..+..
T Consensus 118 ~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 118 D-KNNVKALYKLGVANMYFGFLEEAKENLYKAAS--LNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp S-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred C-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3 44678899999999999999999999999998 444 5677888888888887777766 55555543
No 179
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.24 E-value=1e-05 Score=85.38 Aligned_cols=129 Identities=11% Similarity=0.027 Sum_probs=75.8
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 003829 640 TYNTLMYMYSRSENFARAEDVLREILAKGIKPD---------------IISYNTVIFAYCRNGRMKEASRIFSEMRDSGL 704 (793)
Q Consensus 640 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 704 (793)
.+..+...+.+.|++++|+..|+++++.. +.+ ...|..+..+|.+.|++++|+..++++++...
T Consensus 270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 348 (457)
T 1kt0_A 270 IVKEKGTVYFKGGKYMQAVIQYGKIVSWL-EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDS 348 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHh-cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Confidence 34444445555555555555555555431 111 35667777777777777777777777777322
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHH-HHHHHHhhC
Q 003829 705 VPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLNQRYEAI-TFVNNLSKL 772 (793)
Q Consensus 705 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~ 772 (793)
. +...|..++.+|...|++++|+..|+++++. .| +...+..+..++.+.|++++|. ..+++|...
T Consensus 349 ~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~k 415 (457)
T 1kt0_A 349 A-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQISMCQKKAKEHNERDRRIYANMFKK 415 (457)
T ss_dssp T-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C----CHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred c-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 2 4566777777777777777777777777763 44 3556667777777777766654 344444433
No 180
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.23 E-value=8.7e-06 Score=67.75 Aligned_cols=93 Identities=15% Similarity=0.069 Sum_probs=68.0
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHH
Q 003829 641 YNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYA 719 (793)
Q Consensus 641 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~ 719 (793)
+..+...+.+.|++++|+..++++++.. +.+...|..+..++...|++++|...|+++++ +.| +...+..++.+|.
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--l~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARM--LDPKDIAVHAALAVSHT 96 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHH
Confidence 3345566777788888888888877752 33567777777788888888888888888877 444 4567777777888
Q ss_pred hcCChHHHHHHHHHHHH
Q 003829 720 ADSLFVEALDVVRYMIK 736 (793)
Q Consensus 720 ~~g~~~~A~~~~~~~~~ 736 (793)
..|++++|+..++++++
T Consensus 97 ~~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 97 NEHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 88888888888888775
No 181
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.23 E-value=3.7e-05 Score=83.00 Aligned_cols=160 Identities=11% Similarity=0.049 Sum_probs=133.5
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 003829 616 RQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSEN----------FARAEDVLREILAKGIKPDIISYNTVIFAYCR 685 (793)
Q Consensus 616 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 685 (793)
....++|++.++++.+.+ +.+..+|+.-..++...|+ ++++++.++++++.. +-+..+|..-.+++.+
T Consensus 42 ~~~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~ 119 (567)
T 1dce_A 42 GELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSR 119 (567)
T ss_dssp TCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 344578899999999875 5677788877777777776 999999999999874 3478899999999999
Q ss_pred cC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc------
Q 003829 686 NG--RMKEASRIFSEMRDSGLVPDVITYNTFVASYAADS-LFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKL------ 756 (793)
Q Consensus 686 ~g--~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~------ 756 (793)
.| ++++++++++++++.... +..+|+....++...| .++++++.++++++.+ .-|...|+.....+.+.
T Consensus 120 l~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~ 197 (567)
T 1dce_A 120 LPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDS 197 (567)
T ss_dssp CSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCS
T ss_pred cccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhcccccc
Confidence 99 779999999999995444 6788999999999999 8999999999999853 33688888888877763
Q ss_pred --------CCHHHHHHHHHHHhhCCCCCCHH
Q 003829 757 --------NQRYEAITFVNNLSKLDPHVTKE 779 (793)
Q Consensus 757 --------g~~~~A~~~~~~~~~~~~~~~~~ 779 (793)
+++++|+++++++++.+|++...
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~~~P~~~sa 228 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFFTDPNDQSA 228 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHHCSSCSHH
T ss_pred cccccccHHHHHHHHHHHHHHHhhCCCCccH
Confidence 66899999999999999997765
No 182
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.18 E-value=5.8e-05 Score=79.49 Aligned_cols=168 Identities=7% Similarity=-0.077 Sum_probs=126.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCH----HHHHHHHHHHHccCCHHHHHHHHHHHHHC----CCCCC-HH
Q 003829 605 TLNAMISIYGRRQMVAKTNEILHFMNDSG-FTPSL----TTYNTLMYMYSRSENFARAEDVLREILAK----GIKPD-II 674 (793)
Q Consensus 605 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~ 674 (793)
.+..++..|...|++++|.+.+..+.+.- ..++. .+.+.+...+...|++++|..++++.... +..+. ..
T Consensus 57 al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 136 (434)
T 4b4t_Q 57 SILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHS 136 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHH
Confidence 47788999999999999999999887531 11122 22344555566789999999999988742 22222 46
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHC--CC--CCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHc--CCC-C-C--H
Q 003829 675 SYNTVIFAYCRNGRMKEASRIFSEMRDS--GL--VPD-VITYNTFVASYAADSLFVEALDVVRYMIKQ--GCK-P-N--Q 743 (793)
Q Consensus 675 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~--~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~-p-~--~ 743 (793)
++..++..|...|++++|..+++++... +. .+. ..++..++..|...|++++|..++++.... .+. | . .
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 216 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVA 216 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHH
Confidence 7888999999999999999999998762 22 222 367899999999999999999999998742 111 2 1 3
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHhhC
Q 003829 744 NTYNSIVDGYCKLNQRYEAITFVNNLSKL 772 (793)
Q Consensus 744 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 772 (793)
..+..++..+...|++++|...+.++.+.
T Consensus 217 ~~~~~~g~~~~~~~~y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 217 ELDLMSGILHCEDKDYKTAFSYFFESFES 245 (434)
T ss_dssp HHHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 55677778888999999999999888764
No 183
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.17 E-value=3.7e-05 Score=64.80 Aligned_cols=92 Identities=11% Similarity=0.081 Sum_probs=71.0
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHH
Q 003829 643 TLMYMYSRSENFARAEDVLREILAKGIKPDI---ISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPD----VITYNTFV 715 (793)
Q Consensus 643 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~ 715 (793)
.+...+...|++++|...|+++.+.. +.+. ..+..++.++...|++++|...|+++++. .|+ ...+..++
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~la 83 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR--YPTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSTTHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH--CCCCcccHHHHHHHH
Confidence 45566778888888888888888752 2223 47777888888888999999888888873 333 56678888
Q ss_pred HHHHhcCChHHHHHHHHHHHHc
Q 003829 716 ASYAADSLFVEALDVVRYMIKQ 737 (793)
Q Consensus 716 ~~~~~~g~~~~A~~~~~~~~~~ 737 (793)
.+|...|++++|+..++++++.
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 8888889999999999888874
No 184
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.14 E-value=1.4e-05 Score=70.46 Aligned_cols=133 Identities=10% Similarity=-0.058 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHHCC--CC--C-CH
Q 003829 604 PTLNAMISIYGRRQMVAKTNEILHFMNDSGF-TPS----LTTYNTLMYMYSRSENFARAEDVLREILAKG--IK--P-DI 673 (793)
Q Consensus 604 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~--~-~~ 673 (793)
.++..+...+...|++++|...+++..+... ..+ ..++..+...+...|++++|...+++..... .. + ..
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 4677888889999999999999998876411 112 1367888899999999999999999987531 11 1 14
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003829 674 ISYNTVIFAYCRNGRMKEASRIFSEMRDS----GLVP-DVITYNTFVASYAADSLFVEALDVVRYMIK 736 (793)
Q Consensus 674 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 736 (793)
..+..+..++...|++++|.+.+++..+. +..+ ....+..++..|...|++++|.+.+++.++
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 56788889999999999999999998862 1111 135678899999999999999999999875
No 185
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.14 E-value=2.3e-05 Score=79.82 Aligned_cols=120 Identities=9% Similarity=0.052 Sum_probs=81.1
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHC---------------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 003829 641 YNTLMYMYSRSENFARAEDVLREILAK---------------GIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLV 705 (793)
Q Consensus 641 ~~~l~~~~~~~g~~~~A~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 705 (793)
+..+...+.+.|++++|+..|+++++. .-+.+...|..+..+|.+.|++++|.+.++++++ ..
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~--~~ 303 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALE--ID 303 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TC
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH--hC
Confidence 344445555555566655555555541 0012346777788888888888888888888887 34
Q ss_pred C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHH
Q 003829 706 P-DVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLNQRYEAIT 764 (793)
Q Consensus 706 p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~ 764 (793)
| +...|..++.+|...|++++|++.++++++. .| +...+..+..++.+.++.+++.+
T Consensus 304 p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 304 PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI--APEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 4577788888888888888888888888774 34 46677777777777777766654
No 186
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.12 E-value=7.3e-06 Score=69.96 Aligned_cols=86 Identities=13% Similarity=0.072 Sum_probs=52.2
Q ss_pred CCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCC----------hHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHH
Q 003829 687 GRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSL----------FVEALDVVRYMIKQGCKPN-QNTYNSIVDGYC 754 (793)
Q Consensus 687 g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~ 754 (793)
+.+++|.+.+++.++ ..| +...|..++.++...|+ +++|+..|+++++. .|+ ...|..++.+|.
T Consensus 16 ~~feeA~~~~~~Ai~--l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l--dP~~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 16 LLFEQIRQDAENTYK--SNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--DPKKDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh--CcCcHHHHHHHHHHHH
Confidence 445555555555555 222 34555555555555544 34677777777663 443 566667777766
Q ss_pred ccC-----------CHHHHHHHHHHHhhCCCCC
Q 003829 755 KLN-----------QRYEAITFVNNLSKLDPHV 776 (793)
Q Consensus 755 ~~g-----------~~~~A~~~~~~~~~~~~~~ 776 (793)
..| ++++|+..|+++++++|++
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~ 124 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVDEQPDN 124 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHHhCCCC
Confidence 653 7777888888887777765
No 187
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.12 E-value=3.4e-05 Score=65.98 Aligned_cols=91 Identities=9% Similarity=-0.046 Sum_probs=71.8
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC----
Q 003829 642 NTLMYMYSRSENFARAEDVLREILAKGIKPD-------------IISYNTVIFAYCRNGRMKEASRIFSEMRDSGL---- 704 (793)
Q Consensus 642 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---- 704 (793)
......+.+.|++++|+..|++.++. .|+ ...|..+..++.+.|++++|+..++++++ +
T Consensus 15 ~~~G~~l~~~g~~eeAi~~Y~kAL~l--~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~--l~n~~ 90 (159)
T 2hr2_A 15 LSDAQRQLVAGEYDEAAANCRRAMEI--SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALH--YFNRR 90 (159)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH--HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhh--CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hhhcc
Confidence 34445566667777777777776654 222 23888899999999999999999999998 5
Q ss_pred ---CCCH-HHH----HHHHHHHHhcCChHHHHHHHHHHHH
Q 003829 705 ---VPDV-ITY----NTFVASYAADSLFVEALDVVRYMIK 736 (793)
Q Consensus 705 ---~p~~-~~~----~~l~~~~~~~g~~~~A~~~~~~~~~ 736 (793)
.|+. ..| ...+.++...|++++|+..|++.++
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 7765 677 8999999999999999999999986
No 188
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.11 E-value=2.2e-05 Score=84.75 Aligned_cols=188 Identities=10% Similarity=0.069 Sum_probs=147.3
Q ss_pred CHHHHHHHHHHHHhHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhCCCCCCHHHHHH
Q 003829 574 EIDQMLALSEEIYSERAFLELKKKGFSPDIPTLNAMISIYGRRQM----------VAKTNEILHFMNDSGFTPSLTTYNT 643 (793)
Q Consensus 574 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~ 643 (793)
..++|++.+++++.. -+.+..+|+.-..++.+.|+ +++++++++.+.+.. +-+..+|..
T Consensus 44 ~~eeal~~~~~~l~~----------nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~h 112 (567)
T 1dce_A 44 LDESVLELTSQILGA----------NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHH 112 (567)
T ss_dssp CSHHHHHHHHHHHHH----------CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred CCHHHHHHHHHHHHH----------CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 345677777766531 13345677776666666666 899999999999876 678899999
Q ss_pred HHHHHHccC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 003829 644 LMYMYSRSE--NFARAEDVLREILAKGIKPDIISYNTVIFAYCRNG-RMKEASRIFSEMRDSGLVPDVITYNTFVASYAA 720 (793)
Q Consensus 644 l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 720 (793)
-..++.+.| +++++++.++++.+.+ +-|...|+.-..++...| .+++++++++++++..+. |...|+....++..
T Consensus 113 R~w~l~~l~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~ 190 (567)
T 1dce_A 113 RCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQ 190 (567)
T ss_dssp HHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHh
Confidence 888899999 7799999999999975 347889999999999999 899999999999985444 67888888888776
Q ss_pred c--------------CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHH------------HHHHHHHHhhCCC
Q 003829 721 D--------------SLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYE------------AITFVNNLSKLDP 774 (793)
Q Consensus 721 ~--------------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~------------A~~~~~~~~~~~~ 774 (793)
. +.+++|++.++++++.. +-|...|..+.+.+.+.|+.++ |+..|.++++.+|
T Consensus 191 l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~f~~~i~~~~ 269 (567)
T 1dce_A 191 LHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGS 269 (567)
T ss_dssp HSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCSCEEEEEEETTTTEEEEEEEEEECTTB
T ss_pred hcccccccccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCccceeeeeeccCCceEEEEeccceeccc
Confidence 4 55799999999999853 3358899999999999888666 4444566665555
Q ss_pred C
Q 003829 775 H 775 (793)
Q Consensus 775 ~ 775 (793)
.
T Consensus 270 ~ 270 (567)
T 1dce_A 270 R 270 (567)
T ss_dssp T
T ss_pred c
Confidence 4
No 189
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.11 E-value=2.1e-05 Score=69.56 Aligned_cols=66 Identities=18% Similarity=0.171 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 003829 673 IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPN 742 (793)
Q Consensus 673 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 742 (793)
...|..+..+|.+.|++++|...++++++ +.| +...|..++.+|...|++++|+..++++++. .|+
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~--~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~p~ 129 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLK--REETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN--HPA 129 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CGG
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--CCC
Confidence 46788888899999999999999999988 444 4678889999999999999999999998874 454
No 190
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.10 E-value=3.4e-05 Score=65.85 Aligned_cols=111 Identities=6% Similarity=-0.056 Sum_probs=68.6
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHH
Q 003829 652 ENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAA----DSLFVEA 727 (793)
Q Consensus 652 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A 727 (793)
+++++|+..|++..+.| .++.. +...|...+.+++|.++|++..+.| +...+..|+..|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 35566666666666654 22222 5555555556666666666666643 45566666666666 6667777
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHhhCC
Q 003829 728 LDVVRYMIKQGCKPNQNTYNSIVDGYCK----LNQRYEAITFVNNLSKLD 773 (793)
Q Consensus 728 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 773 (793)
++++++..+.| +...+..|+..|.. .++.++|..+++++.+.+
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 77777766643 45556666666666 667777777777776665
No 191
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.10 E-value=6e-06 Score=68.39 Aligned_cols=87 Identities=10% Similarity=0.033 Sum_probs=61.7
Q ss_pred ccCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 003829 650 RSENFARAEDVLREILAKGI--KPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEA 727 (793)
Q Consensus 650 ~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 727 (793)
..|++++|+..|+++++.+. +.+...+..++.+|...|++++|...|+++++.... +..++..++.+|...|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHH
Confidence 35677788888888877531 223567778888888888888888888888874322 457778888888888888888
Q ss_pred HHHHHHHHHc
Q 003829 728 LDVVRYMIKQ 737 (793)
Q Consensus 728 ~~~~~~~~~~ 737 (793)
+..++++++.
T Consensus 81 ~~~~~~al~~ 90 (117)
T 3k9i_A 81 VELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 8888888764
No 192
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.10 E-value=0.00011 Score=77.31 Aligned_cols=171 Identities=9% Similarity=-0.003 Sum_probs=117.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhcCCC-CCCH----hhHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCC
Q 003829 526 TYNAVLAALARGGMWEQSEKIFAEMKGGRC-KPNE----LTYSSLLHAYANGREIDQMLALSEEIYSERAFLELKKKGFS 600 (793)
Q Consensus 526 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 600 (793)
.+..+...|...|++++|.+.+..+..... .++. .+.+.+...+...|+++.+..+++.... .....+..
T Consensus 57 al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~ 131 (434)
T 4b4t_Q 57 SILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIE-----FAKREKRV 131 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHH-----HHHHSSCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-----HHHHhCcc
Confidence 355677778888888888888877653210 1111 1222233334467889999998887654 22333333
Q ss_pred CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CC---CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC--CCC-C
Q 003829 601 PD-IPTLNAMISIYGRRQMVAKTNEILHFMNDS--GF---TPSLTTYNTLMYMYSRSENFARAEDVLREILAK--GIK-P 671 (793)
Q Consensus 601 ~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~-~ 671 (793)
+. ..++..++..|...|++++|..+++++... +. +....++..++..|...|++++|..++++.... ... |
T Consensus 132 ~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 211 (434)
T 4b4t_Q 132 FLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCP 211 (434)
T ss_dssp SSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCc
Confidence 33 567888999999999999999999887643 11 122456888899999999999999999988743 111 2
Q ss_pred -C--HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003829 672 -D--IISYNTVIFAYCRNGRMKEASRIFSEMRD 701 (793)
Q Consensus 672 -~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 701 (793)
. ...+..++..+...|++++|...|.++.+
T Consensus 212 ~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 212 TQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 1 24566777778888999999999988875
No 193
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.05 E-value=2.2e-05 Score=82.85 Aligned_cols=124 Identities=9% Similarity=0.101 Sum_probs=98.0
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC----------------HHHHHHHH
Q 003829 652 ENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPD----------------VITYNTFV 715 (793)
Q Consensus 652 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----------------~~~~~~l~ 715 (793)
+++++|+..|+...... +-....|..+...|.+.|++++|...|+++++. .|+ ...|..++
T Consensus 248 ~~~~~A~~~~~~~~~~~-~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla 324 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKEK-LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGLSEKESKASESFLLAAFLNLA 324 (457)
T ss_dssp EEEECCCCGGGSCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccCcchhhcCHHHH-HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccCChHHHHHHHHHHHHHHHHHH
Confidence 34555665555444321 113567888999999999999999999999983 333 57899999
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHH
Q 003829 716 ASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKE 779 (793)
Q Consensus 716 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 779 (793)
.+|.+.|++++|+..++++++.. +.+...|..++.+|...|++++|+..|+++++.+|++...
T Consensus 325 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a 387 (457)
T 1kt0_A 325 MCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAA 387 (457)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CH
T ss_pred HHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH
Confidence 99999999999999999999853 3358899999999999999999999999999999987654
No 194
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.05 E-value=3.3e-05 Score=78.69 Aligned_cols=104 Identities=13% Similarity=0.128 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHC--------------CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 003829 674 ISYNTVIFAYCRNGRMKEASRIFSEMRDS--------------GLVP-DVITYNTFVASYAADSLFVEALDVVRYMIKQG 738 (793)
Q Consensus 674 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------------~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 738 (793)
..+..+...+.+.|++++|.+.|+++++. ...| +...|..++.+|.+.|++++|++.++++++.
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~- 302 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI- 302 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-
Confidence 35777888999999999999999999871 0222 3478899999999999999999999999984
Q ss_pred CCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHH
Q 003829 739 CKP-NQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKE 779 (793)
Q Consensus 739 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 779 (793)
.| +...|..++.+|...|++++|+..++++++++|++...
T Consensus 303 -~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~ 343 (370)
T 1ihg_A 303 -DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAI 343 (370)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred -CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH
Confidence 45 58899999999999999999999999999999986544
No 195
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.03 E-value=2.3e-05 Score=83.05 Aligned_cols=120 Identities=13% Similarity=0.086 Sum_probs=97.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 003829 609 MISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGR 688 (793)
Q Consensus 609 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 688 (793)
+...+.+.|++++|.+.|++..+.. +.+...|..+..+|.+.|++++|+..++++++.. +.+...|..++.+|...|+
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 3445678899999999999999874 5678899999999999999999999999999973 3457889999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCC-HHHHHHHHHH--HHhcCChHHHHHHHH
Q 003829 689 MKEASRIFSEMRDSGLVPD-VITYNTFVAS--YAADSLFVEALDVVR 732 (793)
Q Consensus 689 ~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~--~~~~g~~~~A~~~~~ 732 (793)
+++|.+.|+++++. .|+ ...+..+..+ +.+.|++++|++.++
T Consensus 90 ~~eA~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 90 FRAALRDYETVVKV--KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHH--STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999984 442 3455566665 888999999999998
No 196
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.01 E-value=1.8e-05 Score=79.81 Aligned_cols=122 Identities=11% Similarity=0.010 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003829 638 LTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVAS 717 (793)
Q Consensus 638 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 717 (793)
...+..+...+.+.|++++|+..|++++.. .|+... +...|+++++...+. ...|..++.+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 445666667777777777787777777764 333321 122233333332221 1378899999
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHH
Q 003829 718 YAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKE 779 (793)
Q Consensus 718 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 779 (793)
|.+.|++++|+..++++++.. +.+...|..++.+|...|++++|+..++++++.+|++...
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a 300 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAI 300 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHH
Confidence 999999999999999999853 3358899999999999999999999999999999986554
No 197
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.98 E-value=3.3e-05 Score=63.55 Aligned_cols=83 Identities=13% Similarity=0.053 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHh
Q 003829 691 EASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLS 770 (793)
Q Consensus 691 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 770 (793)
+|...|+++++.... +...+..++.+|...|++++|+..++++++.. +.+...|..++.+|...|++++|+..+++++
T Consensus 3 ~a~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQGTD-NMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTTCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345555555552221 34555566666666666666666666665532 2235555666666666666666666666666
Q ss_pred hCCCC
Q 003829 771 KLDPH 775 (793)
Q Consensus 771 ~~~~~ 775 (793)
+..|.
T Consensus 81 ~~~~~ 85 (115)
T 2kat_A 81 AAAQS 85 (115)
T ss_dssp HHHHH
T ss_pred Hhccc
Confidence 65543
No 198
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.98 E-value=7.8e-06 Score=66.80 Aligned_cols=92 Identities=8% Similarity=0.099 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-------HH
Q 003829 673 IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPN-------QN 744 (793)
Q Consensus 673 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-------~~ 744 (793)
...|..++..+...|++++|.+.|+++++. .| +...+..++.+|...|++++|++.++++++. .|+ ..
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~ 79 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITA--QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TSTAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSSTTSHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCccHHHHHHH
Confidence 445566666666666677777666666663 33 4456666666666777777777777766653 333 34
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHH
Q 003829 745 TYNSIVDGYCKLNQRYEAITFVNN 768 (793)
Q Consensus 745 ~~~~l~~~~~~~g~~~~A~~~~~~ 768 (793)
.+..++.++...|++++|+..+++
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHHHHhHhhhHhHHHH
Confidence 455555556666665555554443
No 199
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.96 E-value=4.1e-05 Score=80.44 Aligned_cols=124 Identities=10% Similarity=-0.017 Sum_probs=68.8
Q ss_pred HccCCHHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCC-CCCH-HHHHHH
Q 003829 649 SRSENFARAEDVLREILAK---GIKPD----IISYNTVIFAYCRNGRMKEASRIFSEMRD-----SGL-VPDV-ITYNTF 714 (793)
Q Consensus 649 ~~~g~~~~A~~~~~~~~~~---~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~-~p~~-~~~~~l 714 (793)
...|++++|+.++++.++. -+.++ ..+++.|+.+|...|++++|..+++++++ .|. .|+. .+++.|
T Consensus 320 ~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 399 (490)
T 3n71_A 320 RSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRA 399 (490)
T ss_dssp HTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 3445555555555555432 01111 34566666666666666666666666653 122 2232 456666
Q ss_pred HHHHHhcCChHHHHHHHHHHHH-----cCC-CCC-HHHHHHHHHHHHccCCHHHHHHHHHHHhhC
Q 003829 715 VASYAADSLFVEALDVVRYMIK-----QGC-KPN-QNTYNSIVDGYCKLNQRYEAITFVNNLSKL 772 (793)
Q Consensus 715 ~~~~~~~g~~~~A~~~~~~~~~-----~~~-~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 772 (793)
+..|...|++++|..+++++++ .|- .|+ ..+...+..++...|++++|..+++++.+.
T Consensus 400 a~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 400 GLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777777777666666653 221 122 344455666666667777777777666553
No 200
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.94 E-value=0.00032 Score=59.65 Aligned_cols=111 Identities=10% Similarity=-0.076 Sum_probs=96.4
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHH
Q 003829 617 QMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCR----NGRMKEA 692 (793)
Q Consensus 617 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A 692 (793)
+++++|.+.|++..+.| .++.. |...|...+.+++|.+.|++..+.| +...+..|...|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 46889999999999987 33333 7777888888999999999999875 77888899999988 8999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcC
Q 003829 693 SRIFSEMRDSGLVPDVITYNTFVASYAA----DSLFVEALDVVRYMIKQG 738 (793)
Q Consensus 693 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 738 (793)
.++|++..+.| +...+..|+..|.. .+++++|++++++..+.|
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 99999999964 57788899999998 899999999999999876
No 201
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.76 E-value=6.5e-05 Score=59.83 Aligned_cols=66 Identities=14% Similarity=0.102 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCC
Q 003829 708 VITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDP 774 (793)
Q Consensus 708 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 774 (793)
...+..++.+|...|++++|+..++++++.+ +.+...|..++.+|.+.|++++|+..++++++..|
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 72 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAR 72 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhh
Confidence 3455555556666666666666666655532 11345555566666666666666666666655544
No 202
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.76 E-value=4.8e-05 Score=64.94 Aligned_cols=90 Identities=13% Similarity=0.063 Sum_probs=57.8
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHh
Q 003829 652 ENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGR----------MKEASRIFSEMRDSGLVPD-VITYNTFVASYAA 720 (793)
Q Consensus 652 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~ 720 (793)
+.+++|++.+++.++.. +.+...|..+..++...++ +++|+..|+++++ +.|+ ..+|..++.+|..
T Consensus 16 ~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~--ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL--IDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHH--hCcCcHHHHHHHHHHHHH
Confidence 44566666666666542 2345566666666665554 3477777777777 5553 4677777777776
Q ss_pred cC-----------ChHHHHHHHHHHHHcCCCCCHHHH
Q 003829 721 DS-----------LFVEALDVVRYMIKQGCKPNQNTY 746 (793)
Q Consensus 721 ~g-----------~~~~A~~~~~~~~~~~~~p~~~~~ 746 (793)
.| ++++|++.|+++++ +.|+...|
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y 127 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHY 127 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHH
Confidence 64 78888888888887 45664444
No 203
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.75 E-value=0.00026 Score=57.40 Aligned_cols=69 Identities=16% Similarity=0.130 Sum_probs=62.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCC
Q 003829 707 DVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHV 776 (793)
Q Consensus 707 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 776 (793)
+...+..++..+...|++++|++.++++++.. +.+...+..++.+|.+.|++++|+..++++++.+|++
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 71 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTA 71 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSST
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence 45678889999999999999999999999852 3358889999999999999999999999999999987
No 204
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.71 E-value=0.00026 Score=74.41 Aligned_cols=125 Identities=8% Similarity=0.007 Sum_probs=98.2
Q ss_pred HHHhcCCHHHHHHHHHHHHhC---CCCC----CHHHHHHHHHHHHccCCHHHHHHHHHHHHHC-----C-CCCC-HHHHH
Q 003829 612 IYGRRQMVAKTNEILHFMNDS---GFTP----SLTTYNTLMYMYSRSENFARAEDVLREILAK-----G-IKPD-IISYN 677 (793)
Q Consensus 612 ~~~~~g~~~~A~~~~~~~~~~---~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~-~~~~-~~~~~ 677 (793)
.+..+|++++|+.++++.++. -+.+ ...+++.|+.+|...|++++|+.++++.+.. | -.|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 356789999999999887753 1112 2456899999999999999999999988742 2 1122 46789
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHH-----CCCC-CCH-HHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003829 678 TVIFAYCRNGRMKEASRIFSEMRD-----SGLV-PDV-ITYNTFVASYAADSLFVEALDVVRYMIK 736 (793)
Q Consensus 678 ~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~-p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 736 (793)
.|+..|...|++++|..+++++++ .|.. |+. .+...+..++...|++++|..+|.++.+
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999985 3432 332 5567888888899999999999999976
No 205
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.63 E-value=0.00054 Score=53.04 Aligned_cols=65 Identities=18% Similarity=0.331 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCC
Q 003829 710 TYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPH 775 (793)
Q Consensus 710 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 775 (793)
.+..++..+...|++++|+..++++++.. +.+...+..++.++.+.|++++|...++++++.+|+
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 75 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 75 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 34444444444444444444444444421 112444444444444445555555555554444444
No 206
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.58 E-value=0.00051 Score=56.23 Aligned_cols=78 Identities=13% Similarity=0.104 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 003829 656 RAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSLFVEALDVVRYM 734 (793)
Q Consensus 656 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 734 (793)
+|+..|+++.+.. +.+...+..++.+|...|++++|...|+++++. .| +...|..++.+|...|++++|+..++++
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDF--DPTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3555666666542 334566666677777777777777777777663 33 3456666777777777777777777776
Q ss_pred HH
Q 003829 735 IK 736 (793)
Q Consensus 735 ~~ 736 (793)
++
T Consensus 80 l~ 81 (115)
T 2kat_A 80 LA 81 (115)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 207
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.46 E-value=0.00089 Score=65.90 Aligned_cols=139 Identities=12% Similarity=0.035 Sum_probs=87.3
Q ss_pred CCCHHHHHHHHHHHH--cc---CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHc---C-----CHHHHHHHHHHHH
Q 003829 635 TPSLTTYNTLMYMYS--RS---ENFARAEDVLREILAKGIKPD-IISYNTVIFAYCRN---G-----RMKEASRIFSEMR 700 (793)
Q Consensus 635 ~~~~~~~~~l~~~~~--~~---g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~---g-----~~~~A~~~~~~~~ 700 (793)
+.+...|..++.+.. .. .+..+|+.+|+++++. .|+ ...|..+..+|... + ........++...
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~ 268 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV 268 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence 455556655554432 22 2356777777777775 444 34444444444211 1 1111111222222
Q ss_pred HCCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCC
Q 003829 701 DSGL-VPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVT 777 (793)
Q Consensus 701 ~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 777 (793)
.... ..+..+|..+...+...|++++|+..++++++.+ |+...|..++..+.-.|+.++|.+.+++++.++|.+.
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence 2111 3366788888777777799999999999998864 7777778888888899999999999999999988754
No 208
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.45 E-value=0.0017 Score=50.13 Aligned_cols=82 Identities=18% Similarity=0.105 Sum_probs=56.8
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003829 172 RGSVIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILN 251 (793)
Q Consensus 172 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~ 251 (793)
+..++..+...+...|++++|...++......+. +..++..+..++.+.|++++|+..|++..+..+ .+...+..+..
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~l~~ 85 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCHHHHHHHHH
Confidence 4456666777777788888888888877765433 667777777788888888888888887776642 25556666655
Q ss_pred HHHh
Q 003829 252 VYGK 255 (793)
Q Consensus 252 ~~~~ 255 (793)
.+.+
T Consensus 86 ~~~~ 89 (91)
T 1na3_A 86 AKQK 89 (91)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 5544
No 209
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.45 E-value=0.00025 Score=56.23 Aligned_cols=86 Identities=15% Similarity=0.154 Sum_probs=51.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHH-HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHc
Q 003829 679 VIFAYCRNGRMKEASRIFSEMRDSGLVP-DVI-TYNTFVASYAADSLFVEALDVVRYMIKQGCKPN-QNTYNSIVDGYCK 755 (793)
Q Consensus 679 l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~ 755 (793)
.+..+...|++++|.+.|+++++ ..| +.. .+..++.+|...|++++|++.++++++. .|+ ...+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~------- 74 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQ--TEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL--NPDSPALQAR------- 74 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHH--HCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTSTHHHHH-------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCcHHHHHH-------
Confidence 34556666777777777777766 333 345 6666777777777777777777777663 333 333211
Q ss_pred cCCHHHHHHHHHHHhhCCCCC
Q 003829 756 LNQRYEAITFVNNLSKLDPHV 776 (793)
Q Consensus 756 ~g~~~~A~~~~~~~~~~~~~~ 776 (793)
+.+.+|...++++.+.+|++
T Consensus 75 -~~~~~a~~~~~~~~~~~p~~ 94 (99)
T 2kc7_A 75 -KMVMDILNFYNKDMYNQLEH 94 (99)
T ss_dssp -HHHHHHHHHHCCTTHHHHCC
T ss_pred -HHHHHHHHHHHHHhccCccc
Confidence 45566666666666665554
No 210
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.44 E-value=0.0009 Score=52.85 Aligned_cols=68 Identities=13% Similarity=0.195 Sum_probs=59.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHH
Q 003829 713 TFVASYAADSLFVEALDVVRYMIKQGCKPNQN-TYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKELE 781 (793)
Q Consensus 713 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 781 (793)
..+..+...|++++|+..++++++.. +.+.. .+..++.+|...|++++|+..++++++.+|++....+
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 73 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQA 73 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHH
Confidence 45678889999999999999999853 33567 8999999999999999999999999999999887653
No 211
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.38 E-value=0.00066 Score=57.18 Aligned_cols=89 Identities=11% Similarity=0.203 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHccCCHHHHH
Q 003829 689 MKEASRIFSEMRDSGLVPDVITYNTFVASYAADS---LFVEALDVVRYMIKQGCKP--NQNTYNSIVDGYCKLNQRYEAI 763 (793)
Q Consensus 689 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~ 763 (793)
...+.+.|.+..+.|. ++..+...+++++++++ +.++++.++++..+.+ .| ..+.+..|+-+|.+.|++++|+
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 4556666777766555 57788888888888888 5668899999888753 24 3566677788888999999999
Q ss_pred HHHHHHhhCCCCCCHH
Q 003829 764 TFVNNLSKLDPHVTKE 779 (793)
Q Consensus 764 ~~~~~~~~~~~~~~~~ 779 (793)
++++.+++.+|++...
T Consensus 92 ~y~~~lL~ieP~n~QA 107 (152)
T 1pc2_A 92 KYVRGLLQTEPQNNQA 107 (152)
T ss_dssp HHHHHHHHHCTTCHHH
T ss_pred HHHHHHHhcCCCCHHH
Confidence 9999999999987544
No 212
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.36 E-value=0.00072 Score=53.60 Aligned_cols=64 Identities=17% Similarity=0.118 Sum_probs=40.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003829 672 DIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIK 736 (793)
Q Consensus 672 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 736 (793)
+...+..++.+|...|++++|.+.|+++++.... +...|..++.+|...|++++|++.+++.++
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4556666666666777777777777776663221 345666666777777777777777766654
No 213
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.34 E-value=0.00072 Score=69.74 Aligned_cols=87 Identities=11% Similarity=-0.010 Sum_probs=57.3
Q ss_pred cCCHHHHHHHHHHHHH---CCCCC---CH-HHHHHHHHHHHhcCChHHHHHHHHHHHH-----cC-CCCC-HHHHHHHHH
Q 003829 686 NGRMKEASRIFSEMRD---SGLVP---DV-ITYNTFVASYAADSLFVEALDVVRYMIK-----QG-CKPN-QNTYNSIVD 751 (793)
Q Consensus 686 ~g~~~~A~~~~~~~~~---~~~~p---~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~-~~p~-~~~~~~l~~ 751 (793)
.|++++|..++++.++ .-+.| +. .+++.|+.+|...|++++|+.+++++++ .| -.|+ ..+++.|+.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 3566777777776664 11222 22 5677777777777777777777777663 22 1233 456777888
Q ss_pred HHHccCCHHHHHHHHHHHhhC
Q 003829 752 GYCKLNQRYEAITFVNNLSKL 772 (793)
Q Consensus 752 ~~~~~g~~~~A~~~~~~~~~~ 772 (793)
.|..+|++++|..+++++++.
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHH
Confidence 888888888888888877764
No 214
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.26 E-value=0.0023 Score=66.07 Aligned_cols=92 Identities=9% Similarity=-0.091 Sum_probs=64.2
Q ss_pred HHHHHcCCHHHHHHHHHHHHHC---CCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHH-----cC-CCCC-HHHH
Q 003829 681 FAYCRNGRMKEASRIFSEMRDS---GLVPDV----ITYNTFVASYAADSLFVEALDVVRYMIK-----QG-CKPN-QNTY 746 (793)
Q Consensus 681 ~~~~~~g~~~~A~~~~~~~~~~---~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~-~~p~-~~~~ 746 (793)
..+...|++++|+.+++++++. -+.|+. .+++.++.+|...|++++|+.+++++++ .| ..|+ ..++
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 3455677888888888888752 122221 5678888888888888888888887764 22 1233 4567
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHhhC
Q 003829 747 NSIVDGYCKLNQRYEAITFVNNLSKL 772 (793)
Q Consensus 747 ~~l~~~~~~~g~~~~A~~~~~~~~~~ 772 (793)
+.|+..|..+|++++|..+++++++.
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAFDI 400 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 78888888888888888888887765
No 215
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.21 E-value=0.0045 Score=60.98 Aligned_cols=147 Identities=13% Similarity=0.079 Sum_probs=101.2
Q ss_pred CCCCHHHHHHHHHHHH--hc---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc---C--CHHHH---HHHHHHHH
Q 003829 599 FSPDIPTLNAMISIYG--RR---QMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRS---E--NFARA---EDVLREIL 665 (793)
Q Consensus 599 ~~~~~~~~~~l~~~~~--~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g--~~~~A---~~~~~~~~ 665 (793)
.+.+...|...+++.. .. ....+|..+|++..+.. |.....|..+..+|... + ..... ...++...
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD-P~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~ 268 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS-PEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV 268 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence 3556667777666543 33 34688999999999874 44556666555554311 1 11111 11222211
Q ss_pred HC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH
Q 003829 666 AK-GIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQN 744 (793)
Q Consensus 666 ~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 744 (793)
.. ..+.+..+|..+...+...|++++|...+++++.. .|+...|..++..+.-.|++++|++.++++.. +.|...
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L--n~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~ 344 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDL--EMSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGAN 344 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHH
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcC
Confidence 11 12456788888888888889999999999999994 57888888999999999999999999999998 467777
Q ss_pred HHHHHH
Q 003829 745 TYNSIV 750 (793)
Q Consensus 745 ~~~~l~ 750 (793)
+|...-
T Consensus 345 t~~~~~ 350 (372)
T 3ly7_A 345 TLYWIE 350 (372)
T ss_dssp HHHHHH
T ss_pred hHHHHh
Confidence 765433
No 216
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.20 E-value=0.0021 Score=49.75 Aligned_cols=67 Identities=12% Similarity=-0.039 Sum_probs=48.7
Q ss_pred CHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCC
Q 003829 707 DVITYNTFVASYAADSL---FVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPH 775 (793)
Q Consensus 707 ~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 775 (793)
+...+..++.++...++ .++|..+++++++. .| +......++..+.+.|++++|+.+|+++++.+|.
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~--dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL--EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 55667777777654444 67888888888774 44 3677777777788888888888888888888776
No 217
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.11 E-value=0.0023 Score=50.99 Aligned_cols=68 Identities=9% Similarity=0.047 Sum_probs=35.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcC------CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCH
Q 003829 711 YNTFVASYAADSLFVEALDVVRYMIKQG------CKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTK 778 (793)
Q Consensus 711 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 778 (793)
+..++..+...|+++.|+..++.+++.- -.+...++..|+.++.+.|++++|..+++++++..|++..
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~ 81 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQR 81 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHH
Confidence 3445555555555555555555554320 0112445555666666666666666666666666665433
No 218
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.01 E-value=0.004 Score=64.20 Aligned_cols=86 Identities=6% Similarity=-0.086 Sum_probs=63.3
Q ss_pred cCCHHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCC-CCCH-HHHHHHHH
Q 003829 651 SENFARAEDVLREILAK---GIKPD----IISYNTVIFAYCRNGRMKEASRIFSEMRD-----SGL-VPDV-ITYNTFVA 716 (793)
Q Consensus 651 ~g~~~~A~~~~~~~~~~---~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~-~p~~-~~~~~l~~ 716 (793)
.|++++|+.++++.++. -+.|+ ..+++.++.+|...|++++|..+++++++ .|. .|+. .+|+.|+.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 46777777777776642 12222 45788888888888899988888888875 232 3443 67889999
Q ss_pred HHHhcCChHHHHHHHHHHHH
Q 003829 717 SYAADSLFVEALDVVRYMIK 736 (793)
Q Consensus 717 ~~~~~g~~~~A~~~~~~~~~ 736 (793)
.|...|++++|..+++++++
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 99999999999999988864
No 219
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.84 E-value=0.011 Score=61.14 Aligned_cols=91 Identities=10% Similarity=0.032 Sum_probs=71.3
Q ss_pred HHHHccCCHHHHHHHHHHHHHCC---CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCC-CCCH-HHH
Q 003829 646 YMYSRSENFARAEDVLREILAKG---IKPD----IISYNTVIFAYCRNGRMKEASRIFSEMRD-----SGL-VPDV-ITY 711 (793)
Q Consensus 646 ~~~~~~g~~~~A~~~~~~~~~~~---~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~-~p~~-~~~ 711 (793)
..+...|++++|+.++++.+... +.++ ..+++.++.+|...|++++|+.+++++++ .|. .|+. .++
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 34556788999999999888531 2222 45788899999999999999999998885 232 3443 678
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHH
Q 003829 712 NTFVASYAADSLFVEALDVVRYMIK 736 (793)
Q Consensus 712 ~~l~~~~~~~g~~~~A~~~~~~~~~ 736 (793)
+.|+..|...|++++|..+++++++
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 9999999999999999999999874
No 220
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.81 E-value=0.0095 Score=56.03 Aligned_cols=83 Identities=18% Similarity=0.225 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHcc-C
Q 003829 689 MKEASRIFSEMRDSGLVPD---VITYNTFVASYAAD-----SLFVEALDVVRYMIKQGCKP--NQNTYNSIVDGYCKL-N 757 (793)
Q Consensus 689 ~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~-g 757 (793)
...|...++++++ +.|+ -..|..++..|... |+.++|.+.|+++++. .| +..++..+++.+++. |
T Consensus 179 l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L--nP~~~id~~v~YA~~l~~~~g 254 (301)
T 3u64_A 179 VHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY--CSAHDPDHHITYADALCIPLN 254 (301)
T ss_dssp HHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH--CCTTCSHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh--CCCCCchHHHHHHHHHHHhcC
Confidence 4556666666666 5555 24566666666663 6677777777777663 34 255666666666663 6
Q ss_pred CHHHHHHHHHHHhhCCCC
Q 003829 758 QRYEAITFVNNLSKLDPH 775 (793)
Q Consensus 758 ~~~~A~~~~~~~~~~~~~ 775 (793)
+.++|..++++++...|.
T Consensus 255 d~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 255 NRAGFDEALDRALAIDPE 272 (301)
T ss_dssp CHHHHHHHHHHHHHCCGG
T ss_pred CHHHHHHHHHHHHcCCCC
Confidence 677777777777776666
No 221
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.71 E-value=0.0072 Score=48.83 Aligned_cols=97 Identities=12% Similarity=0.188 Sum_probs=70.4
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH---HHHHHHHHHHcCCCC--CHHHHHHHHHHHHccCCHHHH
Q 003829 688 RMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVE---ALDVVRYMIKQGCKP--NQNTYNSIVDGYCKLNQRYEA 762 (793)
Q Consensus 688 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A 762 (793)
....+.+-|.+....|. ++..+--.+++++.++.+..+ ++.+++...+.+ .| .....-.|+-++.+.|++++|
T Consensus 16 ~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHH
Confidence 34555666666665444 577777888889998887655 888888887653 23 245556778889999999999
Q ss_pred HHHHHHHhhCCCCCCHH-HHHHHHH
Q 003829 763 ITFVNNLSKLDPHVTKE-LECKLSD 786 (793)
Q Consensus 763 ~~~~~~~~~~~~~~~~~-~~~~l~~ 786 (793)
+.+++.+++..|++... ....+|.
T Consensus 94 ~~~~~~lL~~eP~n~QA~~Lk~~i~ 118 (126)
T 1nzn_A 94 LKYVRGLLQTEPQNNQAKELERLID 118 (126)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 99999999999987554 4444443
No 222
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.63 E-value=0.016 Score=48.84 Aligned_cols=85 Identities=16% Similarity=0.162 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC---CHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCCHHHHH
Q 003829 619 VAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSE---NFARAEDVLREILAKGIKP--DIISYNTVIFAYCRNGRMKEAS 693 (793)
Q Consensus 619 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~ 693 (793)
...+.+.|.+..+.+ +++..+.-.+..++++.+ ++++++.+++++.+.+ .| +...+..+.-+|.+.|++++|+
T Consensus 14 l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 344455555555544 356666666666666666 4557777777776653 23 2445555666667777777777
Q ss_pred HHHHHHHHCCCCCC
Q 003829 694 RIFSEMRDSGLVPD 707 (793)
Q Consensus 694 ~~~~~~~~~~~~p~ 707 (793)
++++.+++ +.|+
T Consensus 92 ~y~~~lL~--ieP~ 103 (152)
T 1pc2_A 92 KYVRGLLQ--TEPQ 103 (152)
T ss_dssp HHHHHHHH--HCTT
T ss_pred HHHHHHHh--cCCC
Confidence 77777776 5553
No 223
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.52 E-value=0.096 Score=59.88 Aligned_cols=124 Identities=15% Similarity=0.124 Sum_probs=72.2
Q ss_pred HhcCChHHHHH-HHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 003829 325 GKCRRPKEAMQ-VLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESA 403 (793)
Q Consensus 325 ~~~g~~~~A~~-~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a 403 (793)
...+++++|.+ ++..+ + +......++..+.+.|..++|+++.+.-. .-.......|++++|
T Consensus 610 ~~~~~~~~a~~~~l~~i-----~-~~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~A 671 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPNV-----E-GKDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTLA 671 (814)
T ss_dssp HHTTCHHHHHHHTGGGC-----C-CHHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHHH
T ss_pred HHhCCHHHHHHHHHhcC-----C-chHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHHH
Confidence 35677777766 44221 1 12223566667777777777776653211 112334567888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 003829 404 MKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMK 481 (793)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 481 (793)
.++.+.+ .+...|..+...+.+.|+++.|.+.|.++.. |..+...|...|+.+...++-+...
T Consensus 672 ~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~ 734 (814)
T 3mkq_A 672 RDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAE 734 (814)
T ss_dssp HHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHH
Confidence 7775433 3567788888888888888888888876542 3334444444555554444433333
No 224
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.44 E-value=0.019 Score=44.24 Aligned_cols=65 Identities=12% Similarity=0.100 Sum_probs=43.3
Q ss_pred CCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003829 671 PDIISYNTVIFAYCRNGR---MKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSLFVEALDVVRYMIKQ 737 (793)
Q Consensus 671 ~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 737 (793)
.|...+..+..++...++ .++|..+++++++ ..| +......++..+.+.|++++|+..|+++++.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~--~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQ--LEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH--HCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 455666666666654444 5777777777777 334 4566677777777777777777777777764
No 225
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=96.39 E-value=0.045 Score=44.27 Aligned_cols=83 Identities=10% Similarity=0.065 Sum_probs=63.9
Q ss_pred CCCCCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHH
Q 003829 703 GLVPDVITYNTFVASYAADSL---FVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKE 779 (793)
Q Consensus 703 ~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 779 (793)
+-.|+..+--.+++++.++.+ ..+++.+++++.+.+..-....+-.|+-++.+.|++++|+.+.+.+++..|++...
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA 114 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 114 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHH
Confidence 455677777888889998876 45689999998875411125666788889999999999999999999999998665
Q ss_pred -HHHHHH
Q 003829 780 -LECKLS 785 (793)
Q Consensus 780 -~~~~l~ 785 (793)
....+|
T Consensus 115 ~~Lk~~I 121 (134)
T 3o48_A 115 GALKSMV 121 (134)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 344444
No 226
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.38 E-value=0.08 Score=43.77 Aligned_cols=53 Identities=8% Similarity=-0.148 Sum_probs=31.6
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCC
Q 003829 722 SLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPH 775 (793)
Q Consensus 722 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 775 (793)
++.++|.++|+.+++.+ +.=+.+|...++.-.++|+.+.|++++.+++.++|.
T Consensus 74 ~D~d~aR~vy~~a~~~h-KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 74 QEPDDARDYFQMARANC-KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HCGGGCHHHHHHHHHHC-TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred cCHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 56666666666665431 111555556666666666666666666666666665
No 227
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.29 E-value=0.036 Score=43.88 Aligned_cols=69 Identities=6% Similarity=-0.030 Sum_probs=50.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 003829 672 DIISYNTVIFAYCRNGRMKEASRIFSEMRDSG------LVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPN 742 (793)
Q Consensus 672 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 742 (793)
+......++..+...|+++.|..+|+++++.- -.+...++..|+.+|.+.|++++|+.+++++++ +.|+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~--l~P~ 78 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE--LDPE 78 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTT
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCC
Confidence 44455677778888888888888888877621 112346788888888888888888888888887 3554
No 228
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=96.21 E-value=0.13 Score=42.28 Aligned_cols=83 Identities=8% Similarity=0.049 Sum_probs=62.1
Q ss_pred CCCCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHH-
Q 003829 704 LVPDVITYNTFVASYAADSL---FVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKE- 779 (793)
Q Consensus 704 ~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~- 779 (793)
-.|+..+--.+++++.++.+ ..+++.+++.+.+.+..-.....-.|+-++.+.|++++|+++.+.+++..|++...
T Consensus 35 ~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~ 114 (144)
T 1y8m_A 35 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 114 (144)
T ss_dssp TTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHH
T ss_pred CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHH
Confidence 35677777888888988876 45688889988875322124555677888999999999999999999999988554
Q ss_pred HHHHHHH
Q 003829 780 LECKLSD 786 (793)
Q Consensus 780 ~~~~l~~ 786 (793)
....+|.
T Consensus 115 ~Lk~~Ie 121 (144)
T 1y8m_A 115 ALKSMVE 121 (144)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4544443
No 229
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.12 E-value=0.12 Score=44.67 Aligned_cols=127 Identities=10% Similarity=0.041 Sum_probs=85.3
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 003829 613 YGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEA 692 (793)
Q Consensus 613 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 692 (793)
....|+++.|.++.+.+ .+...|..|.......|+++-|+..|++... +..+.-.|.-.|+.+.-
T Consensus 15 AL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L 79 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKL 79 (177)
T ss_dssp HHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHH
T ss_pred HHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHH
Confidence 35678899988887664 4788899999999999999999888887642 33455556667887777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 003829 693 SRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNL 769 (793)
Q Consensus 693 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 769 (793)
.++-+.....|- ++....++.-.|+++++++++.+.- --|.+..+ ....|-.+.|.++.+++
T Consensus 80 ~kla~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~~~---r~~eA~~~------A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 80 SKMQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAEGG---SLPLAYAV------AKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHTT---CHHHHHHH------HHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHHCC---ChHHHHHH------HHHcCcHHHHHHHHHHh
Confidence 766666655432 4455556677899999988886542 12221111 12346677777777665
No 230
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.11 E-value=0.33 Score=55.35 Aligned_cols=28 Identities=11% Similarity=-0.165 Sum_probs=15.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003829 602 DIPTLNAMISIYGRRQMVAKTNEILHFM 629 (793)
Q Consensus 602 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 629 (793)
+...|..+...+.+.++++.|.+.|.++
T Consensus 680 ~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 680 AEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 3455555555555666666655555554
No 231
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.82 E-value=0.11 Score=43.00 Aligned_cols=114 Identities=9% Similarity=0.101 Sum_probs=72.6
Q ss_pred CCCHHHHHHHHHHHHccCCH------HHHHHHHHHHHHCCCCCCHH----HHHHHH--H-HHHHcCCHHHHHHHHHHHHH
Q 003829 635 TPSLTTYNTLMYMYSRSENF------ARAEDVLREILAKGIKPDII----SYNTVI--F-AYCRNGRMKEASRIFSEMRD 701 (793)
Q Consensus 635 ~~~~~~~~~l~~~~~~~g~~------~~A~~~~~~~~~~~~~~~~~----~~~~l~--~-~~~~~g~~~~A~~~~~~~~~ 701 (793)
+.|..+|-..+....+.|+. ++.+++|+++... ++|+.. .|..+. . .+...++.++|.++|+.+++
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 44666666666666666776 7777788877765 555421 111111 0 12344788889999998876
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003829 702 SGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVD 751 (793)
Q Consensus 702 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 751 (793)
....- ..+|...+..-.++|++++|.+++.+.+..+.. +.......+.
T Consensus 89 ~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k-~~~~le~a~~ 136 (161)
T 4h7y_A 89 NCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAV-PLEMLEIALR 136 (161)
T ss_dssp HCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB-CHHHHHHHHH
T ss_pred HhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC-cHHHHHHHHH
Confidence 42222 677777777778889999999999998876533 3444444443
No 232
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.78 E-value=0.61 Score=40.33 Aligned_cols=100 Identities=13% Similarity=0.111 Sum_probs=54.6
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 003829 324 YGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESA 403 (793)
Q Consensus 324 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a 403 (793)
..+.|+++.|.++.+++ .+...|..|.......|+++-|.+.|..... +..+.-.|.-.|+.+.-
T Consensus 15 AL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L 79 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKL 79 (177)
T ss_dssp HHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHH
T ss_pred HHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHH
Confidence 34566666666666554 1455666666666666666666666665442 33444445555666555
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003829 404 MKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDE 444 (793)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 444 (793)
..+-+.....| + ++.....+...|+++++.++|.+
T Consensus 80 ~kla~iA~~~g---~---~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 80 SKMQNIAQTRE---D---FGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHHTT---C---HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHCc---c---HHHHHHHHHHcCCHHHHHHHHHH
Confidence 55544444433 1 23333444455666666666543
No 233
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.69 E-value=0.069 Score=50.32 Aligned_cols=104 Identities=13% Similarity=0.072 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhc-C
Q 003829 654 FARAEDVLREILAKGIKPD---IISYNTVIFAYCRN-----GRMKEASRIFSEMRDSGLVP--DVITYNTFVASYAAD-S 722 (793)
Q Consensus 654 ~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~-g 722 (793)
..+|...++++++. .|+ -..|..++..|... |+.++|.++|+++++ +.| +..++..++..++.. |
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~--LnP~~~id~~v~YA~~l~~~~g 254 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTR--YCSAHDPDHHITYADALCIPLN 254 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHH--HCCTTCSHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHH--hCCCCCchHHHHHHHHHHHhcC
Confidence 56778888888874 555 45777888888774 888999999999888 555 367777888888874 8
Q ss_pred ChHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 003829 723 LFVEALDVVRYMIKQGCK--PNQNTYNSIVDGYCKLNQRYEAITFVNNL 769 (793)
Q Consensus 723 ~~~~A~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 769 (793)
+.++|.+.+++.+..... |+....+. +..++|..++.++
T Consensus 255 d~~~a~~~L~kAL~a~p~~~P~~~lan~--------~~q~eA~~LL~~~ 295 (301)
T 3u64_A 255 NRAGFDEALDRALAIDPESVPHNKLLVI--------LSQKRARWLKAHV 295 (301)
T ss_dssp CHHHHHHHHHHHHHCCGGGCSSCHHHHH--------HHHHHHHHHHHTH
T ss_pred CHHHHHHHHHHHHcCCCCCCCChhHHHH--------HHHHHHHHHHHHh
Confidence 888889999988875444 44333332 2344565555544
No 234
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=95.58 E-value=1.6e-06 Score=86.20 Aligned_cols=232 Identities=13% Similarity=0.173 Sum_probs=147.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003829 207 DVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLI 286 (793)
Q Consensus 207 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 286 (793)
.+.+|..|+.+..+.|+..+|++-|-+. -|...|..++....+.| .+++-+.++....+..- +...=+.|+
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~-~~edLv~yL~MaRk~~k--e~~IDteLi 123 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSG-NWEELVKYLQMARKKAR--ESYVETELI 123 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSS-CCTTHHHHHHTTSTTCC--STTTTHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhc--ccccHHHHH
Confidence 4568888999999888888887766332 26667888888888888 78888877776655422 344455677
Q ss_pred HHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHH
Q 003829 287 SCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLE 366 (793)
Q Consensus 287 ~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 366 (793)
-+|++.++..+-++++ ..||..-...+.+-|...|.++.|.-+|..+ .-|..|...+++.|++.
T Consensus 124 ~ayAk~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~i---------sN~akLAstLV~L~~yq 187 (624)
T 3lvg_A 124 FALAKTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQ 187 (624)
T ss_dssp HHHHTSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGS---------CCCTTTSSSSSSCSGGG
T ss_pred HHHHhhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhC---------ccHHHHHHHHHHHHHHH
Confidence 7788877765533322 1356666667777788888888777766544 22445566677778877
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003829 367 EAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEIN 446 (793)
Q Consensus 367 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 446 (793)
+|.+.-++. -+..||..+-.+|...+.+.-|.-.--.++-.. | -...++..|-..|.+++-+.+++.-.
T Consensus 188 ~AVdaArKA------ns~ktWKeV~~ACvd~~EfrLAqicGLniIvha---d--eL~elv~~YE~~G~f~ELIsLlEagl 256 (624)
T 3lvg_A 188 AAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHA---D--ELEELINYYQDRGYFEELITMLEAAL 256 (624)
T ss_dssp SSTTTTTTC------CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCS---S--CCSGGGSSSSTTCCCTTSTTTHHHHT
T ss_pred HHHHHHHhc------CChhHHHHHHHHHhCchHHHHHHHhcchhcccH---H--HHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 776553322 245678888888888887776644433333211 1 12345666778888888888887765
Q ss_pred hCCCCCCHHHHHHHHHHHHhCCChHHHHHH
Q 003829 447 KCNCKPDIVTWNTLLAVFGQNGMDSEVSGV 476 (793)
Q Consensus 447 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 476 (793)
... ......|+.|.-.|++- ++++..+.
T Consensus 257 glE-rAHmGmFTELaILYsKY-~PeKlmEH 284 (624)
T 3lvg_A 257 GLE-RAHMGMFTELAILYSKF-KPQKMREH 284 (624)
T ss_dssp TST-TCCHHHHHHHHHHHHSS-CTTHHHHH
T ss_pred CCC-chhHHHHHHHHHHHHhc-CHHHHHHH
Confidence 321 33456666666666654 33443333
No 235
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=95.37 E-value=4.7 Score=45.20 Aligned_cols=26 Identities=12% Similarity=-0.240 Sum_probs=17.6
Q ss_pred HHHHHHhccCCChHHHHHHHHHHHhc
Q 003829 137 LGIVKGLGFHKKTDLALDVFEWFRSC 162 (793)
Q Consensus 137 ~~~~~~~~~~~~~~~A~~~~~~~~~~ 162 (793)
+.+-+.+...|.+++|+.+--..-..
T Consensus 74 lvaSkvyy~Lg~~~~al~yaL~aG~~ 99 (963)
T 4ady_A 74 LIASKVYYNLGEYESAVKYALAAKDR 99 (963)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHGGG
T ss_pred HHHHHHheeccchHHHHHHHHhCCCc
Confidence 33345566679999998887776553
No 236
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.04 E-value=1.1 Score=36.25 Aligned_cols=139 Identities=12% Similarity=0.060 Sum_probs=83.9
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 003829 615 RRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASR 694 (793)
Q Consensus 615 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 694 (793)
-.|.+++..++..+.... .+..-||-++--....-+-+-..++++.+=+. + |. ...|+......
T Consensus 19 ldG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki-F--Di----------s~C~NlKrVi~ 82 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY-F--DL----------DKCQNLKSVVE 82 (172)
T ss_dssp HTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG-S--CG----------GGCSCTHHHHH
T ss_pred HhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh-c--Cc----------HhhhcHHHHHH
Confidence 357777777777777653 24444444444333333444444444433221 1 11 23344444444
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCC
Q 003829 695 IFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDP 774 (793)
Q Consensus 695 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 774 (793)
.+-.+- -+....+..+..+...|+-++-.+++..++. +.+|++.....++.+|.+.|+..+|.++++++-+.|.
T Consensus 83 C~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 83 CGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 443221 1345556667777888888888888888644 3467788888888888888888888888888888875
Q ss_pred C
Q 003829 775 H 775 (793)
Q Consensus 775 ~ 775 (793)
.
T Consensus 157 k 157 (172)
T 1wy6_A 157 K 157 (172)
T ss_dssp H
T ss_pred H
Confidence 3
No 237
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.98 E-value=0.1 Score=42.16 Aligned_cols=65 Identities=15% Similarity=0.074 Sum_probs=29.0
Q ss_pred CCHHHHHHHHHHHHccCCHHH---HHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003829 636 PSLTTYNTLMYMYSRSENFAR---AEDVLREILAKGIKP--DIISYNTVIFAYCRNGRMKEASRIFSEMRD 701 (793)
Q Consensus 636 ~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 701 (793)
++..+--.+..++.+..+... ++.+++++.+.+ .| .......+.-++.+.|++++|+++++.+++
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 444444444445544443333 555555544432 11 122233344445555555555555555555
No 238
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.76 E-value=3.7 Score=42.36 Aligned_cols=203 Identities=14% Similarity=0.078 Sum_probs=112.0
Q ss_pred CChHHHHHHHHHHHhccCCCCCccchHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 003829 147 KKTDLALDVFEWFRSCCSKDGNLVLRGSVIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYRE 226 (793)
Q Consensus 147 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 226 (793)
+++..|++-+..+.+..+...+...+..+...++..|...|+++...+.+..+.+.... ...+-..+++.+
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~q-lk~ai~~~V~~~-------- 100 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQ-LKLSIQYMIQKV-------- 100 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTT-SHHHHHHHHHHH--------
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhh-hHHHHHHHHHHH--------
Confidence 56777777776665433334455567788888889999999988887776655443222 222333333322
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHcCCCHHHHHHHHH
Q 003829 227 AVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKP---DSYTFNTLISCCRRGSLHEEAAGVFE 303 (793)
Q Consensus 227 A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~~~~~~A~~~~~ 303 (793)
..++... ..++..+...++....... +..+-. .......|...+...|++.+|..++.
T Consensus 101 -~~~l~~~----~~~d~~~~~~~i~~l~~vt--------------e~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~ 161 (445)
T 4b4t_P 101 -MEYLKSS----KSLDLNTRISVIETIRVVT--------------ENKIFVEVERARVTKDLVEIKKEEGKIDEAADILC 161 (445)
T ss_dssp -HHHHHHH----CTTHHHHHHHHHHCCSSSS--------------SCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred -HHHHhcC----CchhHHHHHHHHHHHHHHh--------------ccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 2222222 1123333333333221110 000000 01122345566777788888888888
Q ss_pred HHHHC--CCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHH----cCCCCCh--hHHHHHHHHHHhcCCHHHHHHHH
Q 003829 304 EMKLA--GFSPD---KVTYNALLDVYGKCRRPKEAMQVLREMKI----NGCLPSI--VTYNSLISAYARDGLLEEAMELK 372 (793)
Q Consensus 304 ~~~~~--g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~ 372 (793)
++... |.... +..|...++.|...+++..|..++.++.. ....|+. ..+..++..+...+++.+|...|
T Consensus 162 ~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y 241 (445)
T 4b4t_P 162 ELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYL 241 (445)
T ss_dssp HHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 77532 21111 23555667788888888888888877632 1222222 24566677777788888887777
Q ss_pred HHHHH
Q 003829 373 TQMVE 377 (793)
Q Consensus 373 ~~m~~ 377 (793)
.+..+
T Consensus 242 ~e~~~ 246 (445)
T 4b4t_P 242 QEIYQ 246 (445)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 66653
No 239
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=93.40 E-value=2.6 Score=34.10 Aligned_cols=141 Identities=12% Similarity=0.151 Sum_probs=75.7
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003829 359 YARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEM 438 (793)
Q Consensus 359 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 438 (793)
+.-.|.+++..++..+..... +..-||.+|--....-+-+-..++++.+-+. .|. ..+|++...
T Consensus 17 ~ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi----------s~C~NlKrV 80 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSV 80 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHH
T ss_pred HHHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------HhhhcHHHH
Confidence 334566667777666666532 4455555555555555545444444444221 111 233444444
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 003829 439 MKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEA 518 (793)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 518 (793)
...+-.+- .+....+..+..+...|.-++-.+++.++.. +..|+......+..+|.+.|+..+|.+++.++-++
T Consensus 81 i~C~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 81 VECGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHHHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 44333321 2344445555666666666666666666443 23456666666667777777777777776666666
Q ss_pred CCC
Q 003829 519 GVT 521 (793)
Q Consensus 519 ~~~ 521 (793)
|++
T Consensus 155 G~k 157 (172)
T 1wy6_A 155 GEK 157 (172)
T ss_dssp TCH
T ss_pred hhH
Confidence 543
No 240
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=93.24 E-value=3.3 Score=41.45 Aligned_cols=169 Identities=8% Similarity=-0.029 Sum_probs=111.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCC---CHHHHHHHHHHHHcc-CCHHHHHHHHHHHHHCCCCCCHHHH--
Q 003829 604 PTLNAMISIYGRRQMVAKTNEILHFMNDS-GFTP---SLTTYNTLMYMYSRS-ENFARAEDVLREILAKGIKPDIISY-- 676 (793)
Q Consensus 604 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~-- 676 (793)
.....|+..|.+.|+.++..+++...... +.-+ .......+++.+... +..+.-.++..+.++.. .-+..+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~r~flr 98 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWA-KQEKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH-HHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 35667888899999999999988876542 1111 233466778777653 44555555555555321 1122233
Q ss_pred ----HHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCCCHHH
Q 003829 677 ----NTVIFAYCRNGRMKEASRIFSEMRDS--GLVPDV---ITYNTFVASYAADSLFVEALDVVRYMIKQ--GCKPNQNT 745 (793)
Q Consensus 677 ----~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~~ 745 (793)
.-++..|...|++.+|.+++.++.+. ...... .+|..-+..|...|++.++...+.++... .+.+++.+
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i 178 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV 178 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH
Confidence 25788899999999999999999873 222111 56777788899999999999999888642 23234332
Q ss_pred H----HHHHHHHH-ccCCHHHHHHHHHHHhhCC
Q 003829 746 Y----NSIVDGYC-KLNQRYEAITFVNNLSKLD 773 (793)
Q Consensus 746 ~----~~l~~~~~-~~g~~~~A~~~~~~~~~~~ 773 (793)
. ..-+-.+. ..+++.+|...|-++.+..
T Consensus 179 ~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f 211 (394)
T 3txn_A 179 QGALDLQSGILHAADERDFKTAFSYFYEAFEGF 211 (394)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcc
Confidence 2 22333466 7899999999998887553
No 241
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=92.16 E-value=0.62 Score=51.04 Aligned_cols=129 Identities=12% Similarity=0.052 Sum_probs=60.9
Q ss_pred HHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC------CCCC-CHH--
Q 003829 211 YTSLITTYASNGR-YREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSA------GVKP-DSY-- 280 (793)
Q Consensus 211 ~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~------~~~p-~~~-- 280 (793)
...++..+...|+ ++.|+.+|+++.+..+.-+......++..+.+.+..--+|..++.+..+. ...+ +..
T Consensus 251 ~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~ 330 (754)
T 4gns_B 251 MYSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSA 330 (754)
T ss_dssp HHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHH
T ss_pred HHHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccc
Confidence 3444444445566 58899999998887432222223334444444332234455555444321 1111 110
Q ss_pred --------HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 003829 281 --------TFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREM 340 (793)
Q Consensus 281 --------~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 340 (793)
....-...|...|+++.|+++-++....- +-+..+|..|..+|.+.|+++.|+-.++.+
T Consensus 331 ~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 331 RLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred cccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 11111222344555555555555555441 223445555555555555555555555543
No 242
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=91.96 E-value=2.6 Score=34.65 Aligned_cols=66 Identities=8% Similarity=0.010 Sum_probs=31.1
Q ss_pred CCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003829 671 PDIISYNTVIFAYCRNGR---MKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIK 736 (793)
Q Consensus 671 ~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 736 (793)
++..+--.+.+++.++.+ ..++..+++.+.+.+..-.......|+-++.+.|++++|.++.+.+++
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 444444445555555443 234455555555422211123334444455555555555555555555
No 243
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=91.81 E-value=1.2 Score=36.09 Aligned_cols=67 Identities=7% Similarity=0.011 Sum_probs=34.5
Q ss_pred CCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003829 670 KPDIISYNTVIFAYCRNGR---MKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIK 736 (793)
Q Consensus 670 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 736 (793)
.|+..+--.+.+++.++.+ ..++..+++.+.+.+..-....+..|+-++.+.|++++|.++.+.+++
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 3444555555555555543 334555555555532111124444555556666666666666666655
No 244
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=91.59 E-value=10 Score=36.48 Aligned_cols=24 Identities=8% Similarity=0.080 Sum_probs=11.7
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHh
Q 003829 232 KKMEEEGCKPTLITYNVILNVYGK 255 (793)
Q Consensus 232 ~~~~~~~~~p~~~~~~~ll~~~~~ 255 (793)
+.+.+.+.+++......++..+..
T Consensus 81 ev~~~~~~~~~~~~~~rl~~l~~~ 104 (312)
T 2wpv_A 81 EVYDLAEVKVDDISVARLVRLIAE 104 (312)
T ss_dssp HHHHHTTCCCSHHHHHHHHHHHTT
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHH
Confidence 333344555555555555555444
No 245
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=91.57 E-value=17 Score=39.06 Aligned_cols=134 Identities=7% Similarity=-0.013 Sum_probs=60.3
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhCCChHHH
Q 003829 395 EKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPD-IVTWNTLLAVFGQNGMDSEV 473 (793)
Q Consensus 395 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a 473 (793)
.+.|+++.+..+...+...-+ .....|..+.... .....++....+.+... .|- ...-+..+..+.+.+++...
T Consensus 17 ~~~~~~~~~~~l~~~l~~~pL-~~yl~y~~l~~~l-~~~~~~ev~~Fl~~~~~---~p~~~~Lr~~~l~~l~~~~~w~~~ 91 (618)
T 1qsa_A 17 WDNRQMDVVEQMMPGLKDYPL-YPYLEYRQITDDL-MNQPAVTVTNFVRANPT---LPPARTLQSRFVNELARREDWRGL 91 (618)
T ss_dssp HHTTCHHHHHHHSGGGTTSTT-HHHHHHHHHHHTG-GGCCHHHHHHHHHHCTT---CHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHCCCHHHHHHHHHhhcCCCc-HHHHHHHHHHhCc-ccCCHHHHHHHHHHCCC---ChhHHHHHHHHHHHHHhCCCHHHH
Confidence 345777766666555432211 1111222222211 22244444444443211 111 12223344555556666555
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 003829 474 SGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGM 539 (793)
Q Consensus 474 ~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 539 (793)
...+.. .+.+...-.....+....|+..+|......+-..|.. ....+..++..+.+.|.
T Consensus 92 l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~-~p~~c~~l~~~~~~~g~ 151 (618)
T 1qsa_A 92 LAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-QPNACDKLFSVWRASGK 151 (618)
T ss_dssp HHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-CCTHHHHHHHHHHHTTC
T ss_pred HHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC-CcHHHHHHHHHHHHCCC
Confidence 543321 1224444444555666667666666655555544432 34455555555555444
No 246
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.42 E-value=7.5 Score=40.00 Aligned_cols=172 Identities=13% Similarity=0.145 Sum_probs=106.7
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHH----HccCCHHH--HHHHHHHHHH--CC-
Q 003829 599 FSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDS-GFTPSLTTYNTLMYMY----SRSENFAR--AEDVLREILA--KG- 668 (793)
Q Consensus 599 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~----~~~g~~~~--A~~~~~~~~~--~~- 668 (793)
..........++..|...|+++...+.+..+.+. |.. ......++..+ ....+.+. -..+.+.+.. .|
T Consensus 52 ~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql--k~ai~~~V~~~~~~l~~~~~~d~~~~~~~i~~l~~vte~k 129 (445)
T 4b4t_P 52 LASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL--KLSIQYMIQKVMEYLKSSKSLDLNTRISVIETIRVVTENK 129 (445)
T ss_dssp TTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS--HHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHCCSSSSSCC
T ss_pred hhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccc
Confidence 4445677888888899999999888877766643 322 22223333322 22222221 1112211110 01
Q ss_pred CCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--CCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHH----
Q 003829 669 IKP---DIISYNTVIFAYCRNGRMKEASRIFSEMRD--SGLVPD---VITYNTFVASYAADSLFVEALDVVRYMIK---- 736 (793)
Q Consensus 669 ~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---- 736 (793)
+-. .......|...|...|++.+|.++++++.. .|.... ...+..-++.|...+++.+|..+++++..
T Consensus 130 iflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~ 209 (445)
T 4b4t_P 130 IFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFK 209 (445)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcc
Confidence 111 123345677888999999999999999875 233222 25677778888999999999999888742
Q ss_pred cCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHhhC
Q 003829 737 QGCKPN--QNTYNSIVDGYCKLNQRYEAITFVNNLSKL 772 (793)
Q Consensus 737 ~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 772 (793)
....|+ ...+...+..+...+++.+|...|.++.+.
T Consensus 210 ~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 210 NPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 222222 344567777788889999999888888764
No 247
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=90.48 E-value=1.4 Score=33.45 Aligned_cols=62 Identities=13% Similarity=0.234 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003829 689 MKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVD 751 (793)
Q Consensus 689 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 751 (793)
.=+.++-++.+...++.|++.+..+.+++|.+.+++..|+++++-...+ +.....+|..+++
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lq 87 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHH
Confidence 3455666666666777777777777777777777777777777777654 3333455666554
No 248
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=90.44 E-value=1.6 Score=47.81 Aligned_cols=52 Identities=12% Similarity=0.063 Sum_probs=35.6
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHh
Q 003829 717 SYAADSLFVEALDVVRYMIKQGCKPN-QNTYNSIVDGYCKLNQRYEAITFVNNLS 770 (793)
Q Consensus 717 ~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 770 (793)
.|...|+++-|+++.++++. +.|+ ..+|..|+.+|.+.|+++.|.-.++.+.
T Consensus 346 FLl~K~~~elAL~~Ak~AV~--~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 346 FLLNRGDYELALGVSNTSTE--LALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHhccCcHHHHHHHHHHHHh--cCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 44556777777777777766 3443 6777777777777777777777777664
No 249
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=90.43 E-value=2e-05 Score=78.59 Aligned_cols=262 Identities=12% Similarity=0.137 Sum_probs=145.8
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003829 454 IVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAA 533 (793)
Q Consensus 454 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 533 (793)
+..|..|..++...++..+|++.|- +. -|...|..++....+.|.+++-.+++....+..- +...=+.|+-+
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyI---kA---~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~a 125 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYI---KA---DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFA 125 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSC---CC---SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHH
T ss_pred ccHHHHHHHHHHccCchHHHHHHHH---hC---CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHH
Confidence 4556667777666666666655431 11 2445566666666666666666666655544422 33333456666
Q ss_pred HHhcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003829 534 LARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSERAFLELKKKGFSPDIPTLNAMISIY 613 (793)
Q Consensus 534 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 613 (793)
|++.++..+..+++ ..|+..-...+.+-|...|.++.|.-+|.. +.-|..|..++
T Consensus 126 yAk~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~------------------isN~akLAstL 180 (624)
T 3lvg_A 126 LAKTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNN------------------VSNFGRLASTL 180 (624)
T ss_dssp HHTSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGG------------------SCCCTTTSSSS
T ss_pred HHhhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHh------------------CccHHHHHHHH
Confidence 66666654433222 134555555666666666666665544431 11233444445
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 003829 614 GRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEAS 693 (793)
Q Consensus 614 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 693 (793)
.+.|++..|.+.-++ ..++.||..+-.+|...+.+.-|...--.++- .+| ....++.-|...|.+++-.
T Consensus 181 V~L~~yq~AVdaArK------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ELI 249 (624)
T 3lvg_A 181 VHLGEYQAAVDGARK------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFEELI 249 (624)
T ss_dssp SSCSGGGSSTTTTTT------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTST
T ss_pred HHHHHHHHHHHHHHh------cCChhHHHHHHHHHhCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHH
Confidence 555666655443222 34566777777778877777766555444442 222 1224456677778888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 003829 694 RIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVN 767 (793)
Q Consensus 694 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 767 (793)
.+++..+.. -.....+|+-|+-.|++- +.++-.+.++.... +.| .-.++.+|.+..-+.|++-++.
T Consensus 250 sLlEaglgl-ErAHmGmFTELaILYsKY-~PeKlmEHlklf~s---riN---ipKviracE~ahLW~ElvfLY~ 315 (624)
T 3lvg_A 250 TMLEAALGL-ERAHMGMFTELAILYSKF-KPQKMREHLELFWS---RVN---IPKVLRAAEQAHLWAELVFLYD 315 (624)
T ss_dssp TTHHHHTTS-TTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSS---SSC---CTTTHHHHTTTTCHHHHHHHHH
T ss_pred HHHHHHhCC-CchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHH---hcc---HHHHHHHHHHHhhHHHHHHHHh
Confidence 877777642 122456777777777655 34555555544322 111 1134667777777777766654
No 250
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=89.99 E-value=29 Score=39.04 Aligned_cols=266 Identities=12% Similarity=0.010 Sum_probs=143.1
Q ss_pred HHHHhCCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHHHHCCC-------CCCHHHHHHHHH
Q 003829 462 AVFGQNGMDSEVSGVFKEMKRAGFIPE--RDTFNTLISAYSRCGSFDQAMSIYKRMLEAGV-------TPDLSTYNAVLA 532 (793)
Q Consensus 462 ~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-------~~~~~~~~~l~~ 532 (793)
-+....|+.++++.++......+...+ ...-..+.-+....|..+++..++...+...- .+....-..+.-
T Consensus 382 LGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 382 LGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 345667888888777766554211112 22333444455666666677877777665311 011222233333
Q ss_pred HHHhcCC-hHHHHHHHHHHhcCCCCCCHhhHH--HHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCCCHHHHHHH
Q 003829 533 ALARGGM-WEQSEKIFAEMKGGRCKPNELTYS--SLLHAYANGREIDQMLALSEEIYSERAFLELKKKGFSPDIPTLNAM 609 (793)
Q Consensus 533 ~~~~~g~-~~~A~~~~~~~~~~~~~p~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 609 (793)
++.-.|. -+++.+.+..+.... ........ ++...+.-.|+.+....++..+. +. ...+..-+..+
T Consensus 462 Gla~~GS~~eev~e~L~~~L~dd-~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~---------e~-~~e~vrR~aal 530 (963)
T 4ady_A 462 GLAAMGSANIEVYEALKEVLYND-SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQ---------ET-QHGNITRGLAV 530 (963)
T ss_dssp HHHSTTCCCHHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH---------HC-SCHHHHHHHHH
T ss_pred HHHhcCCCCHHHHHHHHHHHhcC-CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHh---------cc-CcHHHHHHHHH
Confidence 4433342 356667776666432 11111112 23333456677666555544322 21 11122233344
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH-HH---HHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 003829 610 ISIYGRRQMVAKTNEILHFMNDSGFTPSLTT-YN---TLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCR 685 (793)
Q Consensus 610 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~---~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 685 (793)
.-++...|+.+.+..+++.+... .+..+ |. ++.-+|+-.|+.....+++..+... ...+......+.-++..
T Consensus 531 gLGll~~g~~e~~~~li~~L~~~---~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d-~~d~VRraAViaLGlI~ 606 (963)
T 4ady_A 531 GLALINYGRQELADDLITKMLAS---DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD-SNDDVRRAAVIALGFVL 606 (963)
T ss_dssp HHHHHTTTCGGGGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHT
T ss_pred HHHhhhCCChHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC-CcHHHHHHHHHHHHhhc
Confidence 44455778888888888888764 23333 32 3445677888988888899988874 22234444444455566
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHcCCCCCHHHH
Q 003829 686 NGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSL-FVEALDVVRYMIKQGCKPNQNTY 746 (793)
Q Consensus 686 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~p~~~~~ 746 (793)
.|+.+.+.++++.+.+.+ .|....-..++-+....|+ ..+|++.+..+.. .+|..+-
T Consensus 607 ~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vr 664 (963)
T 4ady_A 607 LRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVR 664 (963)
T ss_dssp SSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHH
T ss_pred cCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHH
Confidence 777777777777666642 3333333333334444454 3678999999874 4454443
No 251
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=89.57 E-value=1.1 Score=38.03 Aligned_cols=119 Identities=8% Similarity=0.022 Sum_probs=62.4
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCC-CCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCH-HHHHH
Q 003829 644 LMYMYSRSENFARAEDVLREILAKG-IKPD-------IISYNTVIFAYCRNGRMKEASRIFSEMRDSG-LVPDV-ITYNT 713 (793)
Q Consensus 644 l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~-~~~~~ 713 (793)
-+..+...|.++.|+-+.+.+.... ..++ ..++..+++++...|++..|...|+++++.. .-+.. ..+..
T Consensus 26 qik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~ 105 (167)
T 3ffl_A 26 HVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPS 105 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---------
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 3445566677777777766655321 1222 1245566677777777777777777765421 11111 11111
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCC
Q 003829 714 FVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPH 775 (793)
Q Consensus 714 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 775 (793)
+. ....... ......+.+.-..+..+|.+.|+.++|+.+++.+......
T Consensus 106 ~~----~~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~Rt 154 (167)
T 3ffl_A 106 TG----NSASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQRT 154 (167)
T ss_dssp ------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGCC
T ss_pred cc----ccCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhcC
Confidence 10 0000000 0012223455566888999999999999999887655443
No 252
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=87.59 E-value=3.5 Score=41.63 Aligned_cols=70 Identities=14% Similarity=0.111 Sum_probs=52.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHH-----HcCCCCCHHHHH
Q 003829 676 YNTVIFAYCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSLFVEALDVVRYMI-----KQGCKPNQNTYN 747 (793)
Q Consensus 676 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~p~~~~~~ 747 (793)
...++.++...|++++|...+..+.. ..| +...+..++.+|...|+..+|++.|+++. +.|+.|...+-.
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~--~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTF--EHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 34566677788888888888888877 444 56778888888888888888888888764 358888766543
No 253
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=87.56 E-value=15 Score=34.04 Aligned_cols=53 Identities=15% Similarity=0.187 Sum_probs=33.0
Q ss_pred HHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003829 648 YSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRD 701 (793)
Q Consensus 648 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 701 (793)
..+.|++++|++....-++.. +-|...-..++..+|-.|+|+.|.+-++.+.+
T Consensus 7 ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~ 59 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIK 59 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 445566666666666666552 33555555666666666666666666666666
No 254
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=87.55 E-value=6.1 Score=29.82 Aligned_cols=80 Identities=19% Similarity=0.147 Sum_probs=56.4
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 003829 292 GSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMEL 371 (793)
Q Consensus 292 ~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 371 (793)
....++|..+-+.+...|. ...+--.-+..+...|+|++|..+.+.+ +.||.+.|.+|... +.|..+++...
T Consensus 20 ~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce~--rlGl~s~le~r 91 (116)
T 2p58_C 20 NHYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKL----AYPDLEPWLALCEY--RLGLGSALESR 91 (116)
T ss_dssp TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTS----CCGGGHHHHHHHHH--HHTCHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHHHH--hcccHHHHHHH
Confidence 4567888888888887653 1111112244567889999999888776 68888888877544 67888888887
Q ss_pred HHHHHHcC
Q 003829 372 KTQMVEIG 379 (793)
Q Consensus 372 ~~~m~~~g 379 (793)
+.++...|
T Consensus 92 L~~la~sg 99 (116)
T 2p58_C 92 LNRLARSQ 99 (116)
T ss_dssp HHHHTTCC
T ss_pred HHHHHhCC
Confidence 77777665
No 255
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=87.29 E-value=4.7 Score=34.18 Aligned_cols=68 Identities=7% Similarity=-0.020 Sum_probs=48.7
Q ss_pred ccHHHHHHHhccCCChHHHHHHHHHHHhccCCCCCc---cchHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 003829 134 ADLLGIVKGLGFHKKTDLALDVFEWFRSCCSKDGNL---VLRGSVIAVLISMLGKEGKVSVAASLLHGLHK 201 (793)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 201 (793)
+.+..-++.+...+.++.|.-+...+......+++. .....++..+.+++...|+|..|...|+++++
T Consensus 21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 456667777788889998888888765422222221 11334788889999999999999999998643
No 256
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=87.27 E-value=26 Score=35.07 Aligned_cols=91 Identities=12% Similarity=-0.083 Sum_probs=46.6
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCCChhHH----H
Q 003829 285 LISCCRRGSLHEEAAGVFEEMKLAGFSPD-----KVTYNALLDVYGKCRRPKEAMQVLREMKIN--GCLPSIVTY----N 353 (793)
Q Consensus 285 l~~~~~~~~~~~~A~~~~~~~~~~g~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~----~ 353 (793)
++..|...|++.+|..++.++.+.--..| ..+|-.-+..|...+++.++...+...... .+.+++... .
T Consensus 105 L~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~~ 184 (394)
T 3txn_A 105 LIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALDL 184 (394)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHHH
Confidence 45556666777777666666654210111 223444456666777777777666665432 121222211 1
Q ss_pred HHHHHHH-hcCCHHHHHHHHHHH
Q 003829 354 SLISAYA-RDGLLEEAMELKTQM 375 (793)
Q Consensus 354 ~li~~~~-~~g~~~~A~~~~~~m 375 (793)
.-...+. ..+++++|...|-+.
T Consensus 185 ~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 185 QSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HhhHHHHHhccCHHHHHHHHHHH
Confidence 1122344 566777776666554
No 257
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=87.17 E-value=3.6 Score=41.57 Aligned_cols=73 Identities=12% Similarity=0.104 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-----CCCCCCHHHHHH
Q 003829 210 AYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKS-----AGVKPDSYTFNT 284 (793)
Q Consensus 210 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~-----~~~~p~~~~~~~ 284 (793)
+...++..+...|++++|+..+..+.... +-+...|..+|.++.+.| +..+|++.|+.+.+ .|+.|...+-..
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~G-r~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l 250 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSD-RQSDALGAYRRVKTTLADDLGIDPGPTLRAL 250 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 34455666666777777777666666553 336666777777777777 66777777766533 366666654433
No 258
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=86.91 E-value=23 Score=34.23 Aligned_cols=111 Identities=16% Similarity=0.113 Sum_probs=69.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHH----HHHHHcCCCCCHHHHHHHHH
Q 003829 317 YNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELK----TQMVEIGITPDVFTYTTLLS 392 (793)
Q Consensus 317 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~~~~~~~~~li~ 392 (793)
|.++..-|.+.+++++|++++..- ...+.+.|+...|.++. +-+.+.++++|......++.
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~G---------------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~ 102 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILASV---------------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLG 102 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHH---------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 445566678889999998887654 23455667766655554 44556677788777777777
Q ss_pred HHHHcCCHH-HHHHHHHHHH----HCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003829 393 GFEKAGKDE-SAMKVFEEMR----SAG--CKPNICTFNALIKMHGNRGNFVEMMKVF 442 (793)
Q Consensus 393 ~~~~~g~~~-~a~~~~~~~~----~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 442 (793)
.+.....-+ .=..++++++ +.| ..-|......+...|.+.+++.+|..-|
T Consensus 103 L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 103 CLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp HHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 766544321 1122333332 112 2346777788888888888888887776
No 259
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=86.80 E-value=2.9 Score=33.66 Aligned_cols=60 Identities=13% Similarity=0.265 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003829 691 EASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVD 751 (793)
Q Consensus 691 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 751 (793)
+..+-++.+...++.|++.+....+.+|.+.+++..|+++++-.+.+ +.+...+|..+++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lq 130 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHH
Confidence 44555666666777788888888888888888888888888877654 3444556666654
No 260
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=86.46 E-value=25 Score=34.06 Aligned_cols=105 Identities=13% Similarity=0.073 Sum_probs=49.0
Q ss_pred HHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH----HHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 003829 183 LGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAVMV----FKKMEEEGCKPTLITYNVILNVYGKMGM 258 (793)
Q Consensus 183 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~----~~~~~~~~~~p~~~~~~~ll~~~~~~g~ 258 (793)
+.+.+++++|.+++.+-. ..+.+.|+...|.++ .+.+.+.++++|......++..+.....
T Consensus 45 y~~~k~y~eAidLL~~GA---------------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~ 109 (336)
T 3lpz_A 45 YSKQGNWAAAVDILASVS---------------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQP 109 (336)
T ss_dssp HHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCT
T ss_pred HHhhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC
Confidence 345677777766654321 123344554443333 3444455666666666666666655441
Q ss_pred CHHHHHHHHHHHHhC----C--CCCCHHHHHHHHHHHHcCCCHHHHHHHH
Q 003829 259 PWNKIMALVEGMKSA----G--VKPDSYTFNTLISCCRRGSLHEEAAGVF 302 (793)
Q Consensus 259 ~~~~a~~~~~~~~~~----~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~ 302 (793)
....-..+++++++. | ..-|......+...|.+.+++.+|+..|
T Consensus 110 ~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 110 GEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp TCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 111222233333221 1 1223444444455555555555555554
No 261
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=86.39 E-value=5.9 Score=29.86 Aligned_cols=80 Identities=18% Similarity=0.089 Sum_probs=56.6
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 003829 292 GSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMEL 371 (793)
Q Consensus 292 ~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 371 (793)
....++|..+-+.+...|. ...+--.-+..+...|+|++|..+.+.+ +.||.+.|.+|.. .+.|..+++...
T Consensus 19 ~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le~r 90 (115)
T 2uwj_G 19 QHCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGN----PWPALEPWFALCE--WHLGLGAALDRR 90 (115)
T ss_dssp TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTC----CCGGGHHHHHHHH--HHTTCHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHHHH
Confidence 3567888888888887653 1111112244567889999998888776 6888888887654 477888888888
Q ss_pred HHHHHHcC
Q 003829 372 KTQMVEIG 379 (793)
Q Consensus 372 ~~~m~~~g 379 (793)
+.++...|
T Consensus 91 L~~la~sg 98 (115)
T 2uwj_G 91 LAGLGGSS 98 (115)
T ss_dssp HHHHHTCS
T ss_pred HHHHHhCC
Confidence 87777766
No 262
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=86.30 E-value=24 Score=33.83 Aligned_cols=24 Identities=25% Similarity=0.558 Sum_probs=12.9
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHH
Q 003829 491 TFNTLISAYSRCGSFDQAMSIYKR 514 (793)
Q Consensus 491 ~~~~l~~~~~~~g~~~~a~~~~~~ 514 (793)
.|.++..-|.+.+++++|.+++..
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~ 58 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQ 58 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHH
Confidence 444455555556666666555433
No 263
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=85.81 E-value=2.1 Score=39.68 Aligned_cols=54 Identities=19% Similarity=0.208 Sum_probs=34.6
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003829 682 AYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIK 736 (793)
Q Consensus 682 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 736 (793)
...+.|++++|+.....-++.... |...-..|+..+|-.|++++|.+.++...+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~-da~~R~~LfqLLcv~G~w~RA~~QL~~~a~ 59 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIK 59 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 344566777777776666664332 555566666777777777777777776665
No 264
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=85.50 E-value=9.9 Score=44.79 Aligned_cols=88 Identities=10% Similarity=0.091 Sum_probs=61.4
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHhhHHHH
Q 003829 490 DTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDL----STYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSL 565 (793)
Q Consensus 490 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 565 (793)
.-|..++..+.+.+.++.+.++-..+++....-+. ..|..+...+...|++++|...+-.+.+.. --...+..|
T Consensus 900 ~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~--~r~~cLr~L 977 (1139)
T 4fhn_B 900 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTP--LKKSCLLDF 977 (1139)
T ss_dssp HHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSS--SCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHH--HHHHHHHHH
Confidence 45677777888888888888887777664322222 257778888889999999998888776542 234566667
Q ss_pred HHHHHcCCCHHHHH
Q 003829 566 LHAYANGREIDQML 579 (793)
Q Consensus 566 ~~~~~~~~~~~~a~ 579 (793)
+..++..+..+.-+
T Consensus 978 V~~lce~~~~~~L~ 991 (1139)
T 4fhn_B 978 VNQLTKQGKINQLL 991 (1139)
T ss_dssp HHHHHHHCCHHHHH
T ss_pred HHHHHhCCChhhhh
Confidence 77777666665543
No 265
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=84.21 E-value=14 Score=43.47 Aligned_cols=53 Identities=13% Similarity=0.176 Sum_probs=38.2
Q ss_pred HHHHHHhccCCChHHHHHHHHHHHhccCCCCCccchHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 003829 137 LGIVKGLGFHKKTDLALDVFEWFRSCCSKDGNLVLRGSVIAVLISMLGKEGKVSVAASLLHGL 199 (793)
Q Consensus 137 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 199 (793)
..++..+...+.++.|.++..|... ++....+++.++...|++++|.+.|++.
T Consensus 816 ~~l~~~l~~~~~~~~~~~l~~~~~~----------~~~~~yl~g~~~L~~ge~~~A~~~F~ka 868 (1139)
T 4fhn_B 816 TELVEKLFLFKQYNACMQLIGWLNS----------DPIAVYLKALIYLKSKEAVKAVRCFKTT 868 (1139)
T ss_dssp HHHHHHHHHHSCTTHHHHHHHHSCC----------CHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHHHHHhhhHHHHHHHhhhccC----------CcHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3455666677777778777766533 3334467788888999999999999865
No 266
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=84.09 E-value=12 Score=28.46 Aligned_cols=63 Identities=17% Similarity=0.174 Sum_probs=44.2
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003829 618 MVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIF 681 (793)
Q Consensus 618 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 681 (793)
+.-+..+-++.+...++-|++.+....+.+|.+.+++.-|.++++-+..+ +.....+|..++.
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHH
Confidence 45566667777777777888888888888888888888888888877754 2333445665553
No 267
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=83.64 E-value=13 Score=32.78 Aligned_cols=57 Identities=19% Similarity=0.401 Sum_probs=45.2
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 003829 686 NGRMKEASRIFSEMRDSGLVPD-VITYNTFVASYAADSLFVEALDVVRYMIKQGCKPN 742 (793)
Q Consensus 686 ~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 742 (793)
.++..++.++|..|...|+.-. ...|...+..+...|++++|.++|+.-++.+-.|-
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 4457788899999988776543 46778888888888999999999999888777774
No 268
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=83.11 E-value=5.2 Score=40.99 Aligned_cols=97 Identities=15% Similarity=0.026 Sum_probs=62.7
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---CCCCCCHH--HHH
Q 003829 640 TYNTLMYMYSRSENFARAEDVLREILAKGIK--PDIISYNTVIFAYCRNGRMKEASRIFSEMRD---SGLVPDVI--TYN 712 (793)
Q Consensus 640 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~p~~~--~~~ 712 (793)
+...++..|.+.|++++|.+.+.++...... --...+...+..+...+++..+...++++.. .+..|+.. ...
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 4556778888888888888888888754222 2245667777788888888888888888764 23333321 112
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHH
Q 003829 713 TFVASYAADSLFVEALDVVRYMIK 736 (793)
Q Consensus 713 ~l~~~~~~~g~~~~A~~~~~~~~~ 736 (793)
.-+..+...+++.+|...|-+...
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhc
Confidence 222334466778888777777654
No 269
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=83.08 E-value=6.3 Score=34.67 Aligned_cols=71 Identities=15% Similarity=0.199 Sum_probs=54.1
Q ss_pred CCCHHHHH---HHHHHHHccCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 003829 635 TPSLTTYN---TLMYMYSRSENFARAEDVLREILAKGIKPD-IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP 706 (793)
Q Consensus 635 ~~~~~~~~---~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 706 (793)
..|+.-.. .+++.+ ..++..++.++|..|...|+--. ...|......+...|++++|.++|+.-++.+-.|
T Consensus 74 kND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 74 RNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 45655433 333333 25557899999999998876544 5678888889999999999999999999987777
No 270
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=80.40 E-value=11 Score=38.65 Aligned_cols=99 Identities=8% Similarity=-0.032 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC---CCCCCHHH--H
Q 003829 604 PTLNAMISIYGRRQMVAKTNEILHFMNDS--GFTPSLTTYNTLMYMYSRSENFARAEDVLREILAK---GIKPDIIS--Y 676 (793)
Q Consensus 604 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~--~ 676 (793)
.+...++..|.+.|++++|.+.|.++... +...-...+-.++..+...+++..+...++++... +..++... .
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 46788999999999999999999999875 33344566788889999999999999999998643 22333221 1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHC
Q 003829 677 NTVIFAYCRNGRMKEASRIFSEMRDS 702 (793)
Q Consensus 677 ~~l~~~~~~~g~~~~A~~~~~~~~~~ 702 (793)
..-+..+...+++.+|...|-++...
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 12223345678999999999887763
No 271
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=78.81 E-value=20 Score=29.02 Aligned_cols=63 Identities=17% Similarity=0.174 Sum_probs=43.6
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003829 618 MVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIF 681 (793)
Q Consensus 618 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 681 (793)
+.-+..+-++.+...++-|++.+....+.+|.+.+|+.-|..+|+-+..+ ..+...+|..++.
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHH
Confidence 44556666666767777788888888888888888888888888877754 3334445665553
No 272
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=78.53 E-value=16 Score=27.67 Aligned_cols=78 Identities=14% Similarity=0.101 Sum_probs=48.9
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 003829 688 RMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVN 767 (793)
Q Consensus 688 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 767 (793)
..++|..+-+-+...+. ...+--.-+..+...|+|++|..+.+.. .-||.+.|..|. -.+.|-.+++...+.
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALc--e~rlGl~s~le~rL~ 93 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKL----AYPDLEPWLALC--EYRLGLGSALESRLN 93 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTS----CCGGGHHHHHHH--HHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHH--HHhcccHHHHHHHHH
Confidence 56777777776665433 2222223334567778888888777664 467777776654 347777777777776
Q ss_pred HHhhCC
Q 003829 768 NLSKLD 773 (793)
Q Consensus 768 ~~~~~~ 773 (793)
++-..+
T Consensus 94 ~la~sg 99 (116)
T 2p58_C 94 RLARSQ 99 (116)
T ss_dssp HHTTCC
T ss_pred HHHhCC
Confidence 665554
No 273
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=74.17 E-value=16 Score=27.65 Aligned_cols=78 Identities=17% Similarity=0.041 Sum_probs=47.1
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 003829 688 RMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVN 767 (793)
Q Consensus 688 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 767 (793)
..++|..+-+-+...+. ...+--.-+..+...|+|++|..+.+.. .-||.+.|..|. -.+.|-.+++...+.
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALc--e~rlGl~s~le~rL~ 92 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGN----PWPALEPWFALC--EWHLGLGAALDRRLA 92 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTC----CCGGGHHHHHHH--HHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHH--HHhcccHHHHHHHHH
Confidence 46777777666665433 2222223333566778888777766654 466777666554 347777777777776
Q ss_pred HHhhCC
Q 003829 768 NLSKLD 773 (793)
Q Consensus 768 ~~~~~~ 773 (793)
++-..+
T Consensus 93 ~la~sg 98 (115)
T 2uwj_G 93 GLGGSS 98 (115)
T ss_dssp HHHTCS
T ss_pred HHHhCC
Confidence 655554
No 274
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=73.90 E-value=28 Score=29.09 Aligned_cols=53 Identities=15% Similarity=0.223 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 003829 690 KEASRIFSEMRDSGLVPD-VITYNTFVASYAADSLFVEALDVVRYMIKQGCKPN 742 (793)
Q Consensus 690 ~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 742 (793)
+++.++|..|...|+.-. ...|...+..+...|++++|.++|+.-++.+-.|-
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 135 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPR 135 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 346777777777665433 35566666777777777777777777776665654
No 275
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=72.12 E-value=20 Score=30.39 Aligned_cols=54 Identities=20% Similarity=0.319 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH
Q 003829 690 KEASRIFSEMRDSGLVPD-VITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQ 743 (793)
Q Consensus 690 ~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 743 (793)
+++.++|..|...|+.-. ...|...+..+...|++.+|.++|+.-++.+-.|-.
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~ 131 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLE 131 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 446677888877766543 356677777777888888888888888777666653
No 276
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=70.05 E-value=24 Score=29.47 Aligned_cols=57 Identities=7% Similarity=0.001 Sum_probs=48.3
Q ss_pred hHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHH
Q 003829 724 FVEALDVVRYMIKQGCKPN-QNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKEL 780 (793)
Q Consensus 724 ~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 780 (793)
.+++.++|..|..+|+--. +..|...+..+...|++++|.++++..++.+-.|-...
T Consensus 81 ~~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~rL 138 (152)
T 4a1g_A 81 NSDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPREFL 138 (152)
T ss_dssp BSCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHH
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHH
Confidence 3559999999998877555 77788999999999999999999999999988865543
No 277
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=69.63 E-value=1.2e+02 Score=32.39 Aligned_cols=50 Identities=8% Similarity=-0.104 Sum_probs=30.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 003829 610 ISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLR 662 (793)
Q Consensus 610 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 662 (793)
+..+...|....|...+..+.+. .+......+.......|..+.++....
T Consensus 388 ~~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~a~~~~~~~~~v~~~~ 437 (618)
T 1qsa_A 388 VRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWDLSVQATI 437 (618)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHCCChhhHHHHHHHHHhc---CCHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 34566778888888888777653 233333445555566777776665443
No 278
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=69.41 E-value=46 Score=28.19 Aligned_cols=55 Identities=18% Similarity=0.166 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHH
Q 003829 725 VEALDVVRYMIKQGCKPN-QNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKE 779 (793)
Q Consensus 725 ~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 779 (793)
+++.++|..|..+|+--. +..|...+..+...|++.+|.++|+..++.+-.|-..
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~ 132 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLER 132 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Confidence 458889999998887655 7778899999999999999999999999998887654
No 279
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=60.11 E-value=33 Score=29.03 Aligned_cols=79 Identities=13% Similarity=0.066 Sum_probs=42.9
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC--C--------------CH-HHHH
Q 003829 650 RSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLV--P--------------DV-ITYN 712 (793)
Q Consensus 650 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--p--------------~~-~~~~ 712 (793)
-.|.+.+++-++..+- +..+...-.-+|.+..++..|...++.+++-.+. | |. ..|+
T Consensus 45 yngEY~R~Lf~L~~lN------T~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~ 118 (242)
T 3kae_A 45 LNGEYTRALFHLHKLN------TCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFES 118 (242)
T ss_dssp HTTCHHHHHHHHHTCC------BHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHH
T ss_pred hcchHhHHHHHHHhcc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHH
Confidence 4566776665543221 1111111223566777888888888888754333 1 11 2345
Q ss_pred HHHHHHHhcCChHHHHHHHHHH
Q 003829 713 TFVASYAADSLFVEALDVVRYM 734 (793)
Q Consensus 713 ~l~~~~~~~g~~~~A~~~~~~~ 734 (793)
.++..|...|+.++|+..+..-
T Consensus 119 l~a~lltq~g~r~EaI~y~~~S 140 (242)
T 3kae_A 119 LLGDLCTLSGYREEGIGHYVRS 140 (242)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHhhhHhhhh
Confidence 5555566666666666666553
No 280
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=59.04 E-value=21 Score=32.02 Aligned_cols=53 Identities=21% Similarity=0.318 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 003829 690 KEASRIFSEMRDSGLVPD-VITYNTFVASYAADSLFVEALDVVRYMIKQGCKPN 742 (793)
Q Consensus 690 ~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 742 (793)
+++..+|..|...|+.-. ...|...+..+...|++++|..+|+.-++.+-.|-
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 184 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPF 184 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 577788888888777543 36677888888888888888888888887776764
No 281
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=58.92 E-value=42 Score=32.05 Aligned_cols=26 Identities=12% Similarity=0.055 Sum_probs=14.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHc
Q 003829 712 NTFVASYAADSLFVEALDVVRYMIKQ 737 (793)
Q Consensus 712 ~~l~~~~~~~g~~~~A~~~~~~~~~~ 737 (793)
..-+....+.+++..|..+.+++++.
T Consensus 211 r~AM~~a~K~KNy~tAa~fArrLLel 236 (325)
T 3mv2_A 211 QVAMSQHFKHKNFLQASYFAGEFLKI 236 (325)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 34444455555566666666665553
No 282
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=53.50 E-value=1.6e+02 Score=30.06 Aligned_cols=55 Identities=11% Similarity=0.070 Sum_probs=36.3
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-----hHHHHHHHHHHHHcCC
Q 003829 685 RNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSL-----FVEALDVVRYMIKQGC 739 (793)
Q Consensus 685 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-----~~~A~~~~~~~~~~~~ 739 (793)
+.++.+.|+.++.+|++.|..|....-..+..+....|. ..-|...++....-|.
T Consensus 267 rgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a~p~a~~~~~~~~~~~~~~g~ 326 (447)
T 3pvs_A 267 RGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVGP 326 (447)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTHHHHHHHHHHHHHHHSCH
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHhCC
Confidence 457899999999999998887765555555666666665 2334445555555553
No 283
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=51.83 E-value=1.2e+02 Score=26.47 Aligned_cols=88 Identities=18% Similarity=0.196 Sum_probs=47.5
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-----hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH---cc
Q 003829 685 RNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSL-----FVEALDVVRYMIKQGCKPNQNTYNSIVDGYC---KL 756 (793)
Q Consensus 685 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-----~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~---~~ 756 (793)
+-.+.+.|+-++-+|++.| .|....-..++-+....|. ..-|...++.....|.+--.......+--++ |.
T Consensus 26 RGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE~~i~LaqaviyLA~aPKS 104 (204)
T 2r9g_A 26 RGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLPEARIPLADVVVDLCLSPKS 104 (204)
T ss_dssp HTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHSCCC
T ss_pred hcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc
Confidence 4468888888888888888 6655555566666666665 2334444555555664332222222222222 33
Q ss_pred CCHHHHHHHHHHHhhCC
Q 003829 757 NQRYEAITFVNNLSKLD 773 (793)
Q Consensus 757 g~~~~A~~~~~~~~~~~ 773 (793)
+-...|+....+.++.+
T Consensus 105 Ns~y~A~~~A~~~v~~~ 121 (204)
T 2r9g_A 105 NSAYMALDAALADIREG 121 (204)
T ss_dssp CHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 44445555554444444
No 284
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=48.91 E-value=1.3e+02 Score=26.53 Aligned_cols=98 Identities=15% Similarity=0.081 Sum_probs=53.5
Q ss_pred HHHHHHHHHH---HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-----hHHHHHHHHHHHHcCCCCCHHHH
Q 003829 675 SYNTVIFAYC---RNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSL-----FVEALDVVRYMIKQGCKPNQNTY 746 (793)
Q Consensus 675 ~~~~l~~~~~---~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-----~~~A~~~~~~~~~~~~~p~~~~~ 746 (793)
.+.-++.++. +-.+.+.|+-++-+|++.|-.|....-..++-+....|. ..-|...++.....|.+--....
T Consensus 34 ~HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE~~i~L 113 (213)
T 3ctd_A 34 NHFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGFPEGLFFL 113 (213)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCTTTTHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 3344455553 446888888888888888877665555666666666665 23445555555556643322222
Q ss_pred H-HHHHHHH--ccCCHHHHHHHHHHHhhCC
Q 003829 747 N-SIVDGYC--KLNQRYEAITFVNNLSKLD 773 (793)
Q Consensus 747 ~-~l~~~~~--~~g~~~~A~~~~~~~~~~~ 773 (793)
. .++..+. |.+-. .|+....+.++.+
T Consensus 114 aqaviyLA~APKSNs~-~A~~~A~~~v~~~ 142 (213)
T 3ctd_A 114 SQASLYLAISPKSNST-KSIFKAMEAIKAT 142 (213)
T ss_dssp HHHHHHHHHSCCCCGG-GHHHHHHHHHC--
T ss_pred HHHHHHHHcCCccHHH-HHHHHHHHHHHhc
Confidence 2 2222111 44445 6665555555554
No 285
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=48.77 E-value=40 Score=30.21 Aligned_cols=84 Identities=7% Similarity=0.069 Sum_probs=59.4
Q ss_pred HHHHHHHHHC-----CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHH
Q 003829 693 SRIFSEMRDS-----GLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPN-QNTYNSIVDGYCKLNQRYEAITFV 766 (793)
Q Consensus 693 ~~~~~~~~~~-----~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~ 766 (793)
..+++++.+. ...-|.......+ -|... .+++.++|..|..+|+--. +..|...+..+...|++++|.++|
T Consensus 97 ~~lLErc~~~F~~~~rYknD~RyLklWl-~Ya~~--~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy 173 (223)
T 4aez_C 97 VTLLERCTREFVRNPLYKDDVRYLRIWM-QYVNY--IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVY 173 (223)
T ss_dssp HHHHHHHHHHTTTCGGGTTCHHHHHHHH-HHHTT--CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhcccccccCCHHHHHHHH-HHHHc--cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4555555542 1333554333322 34432 3678899999998887655 777889999999999999999999
Q ss_pred HHHhhCCCCCCHH
Q 003829 767 NNLSKLDPHVTKE 779 (793)
Q Consensus 767 ~~~~~~~~~~~~~ 779 (793)
+..++.+-.|-..
T Consensus 174 ~~Gi~~~A~P~~r 186 (223)
T 4aez_C 174 QKGKRMKAKPFLR 186 (223)
T ss_dssp HHHHHHTCBSHHH
T ss_pred HHHHHcCCccHHH
Confidence 9999998776443
No 286
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=44.15 E-value=1.7e+02 Score=25.89 Aligned_cols=20 Identities=25% Similarity=0.087 Sum_probs=9.8
Q ss_pred HHHHcCCHHHHHHHHHHHHH
Q 003829 393 GFEKAGKDESAMKVFEEMRS 412 (793)
Q Consensus 393 ~~~~~g~~~~a~~~~~~~~~ 412 (793)
.|.+.|.+++|.++++....
T Consensus 123 VCiek~~f~kA~eiLkr~~~ 142 (235)
T 3bu8_A 123 ICIKNKEFEKASKILKKHMS 142 (235)
T ss_dssp HHHHTTCHHHHHHHHHHHST
T ss_pred HHHHhcchHHHHHHHHHHhc
Confidence 34445555555555554443
No 287
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=43.93 E-value=1.5e+02 Score=28.95 Aligned_cols=63 Identities=14% Similarity=0.231 Sum_probs=37.9
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC--hHHHHHHHHHHhcCCC
Q 003829 492 FNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGM--WEQSEKIFAEMKGGRC 555 (793)
Q Consensus 492 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~ 555 (793)
...++.-|...|+.++|.+.++++....+. ...+...+..++-+.++ .+....++..+...++
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~gl 284 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSST 284 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCC
Confidence 456777788888888888888887643222 23334444455554432 3456667766665543
No 288
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=43.78 E-value=1.5e+02 Score=25.80 Aligned_cols=39 Identities=10% Similarity=0.046 Sum_probs=23.1
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 003829 685 RNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSL 723 (793)
Q Consensus 685 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 723 (793)
+-.+.+.|+-++-+|++.|-.|....-..++-+....|.
T Consensus 19 RGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIGl 57 (201)
T 3bge_A 19 RGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGN 57 (201)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGG
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccC
Confidence 335677777777777776665554444455555555554
No 289
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=43.57 E-value=3.4e+02 Score=29.23 Aligned_cols=82 Identities=10% Similarity=-0.010 Sum_probs=40.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc--
Q 003829 424 ALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSR-- 501 (793)
Q Consensus 424 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~-- 501 (793)
....++.-.|+++.|++.+-.. ...+.+.+...+..|.-.+ .. ..+......-...-+..||..|.+
T Consensus 299 lYf~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~~gLL~---~~----~~lls~~~~~~~lN~arLI~~Yt~~F 367 (661)
T 2qx5_A 299 YYLQTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLASLKLFK---ID----SSTRLTKKPKRDIRFANILANYTKSF 367 (661)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHHHTTC------------------------CHHHHHHHHHTTT
T ss_pred HHHHHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHHHcCCcc---CC----CcccccCCCcccccHHHHHHHHHHHh
Confidence 3555666789999999987754 1334444444333332222 11 111111000012236667776654
Q ss_pred -cCCHHHHHHHHHHHH
Q 003829 502 -CGSFDQAMSIYKRML 516 (793)
Q Consensus 502 -~g~~~~a~~~~~~~~ 516 (793)
..+..+|.++|-.+.
T Consensus 368 ~~td~~~Al~Y~~li~ 383 (661)
T 2qx5_A 368 RYSDPRVAVEYLVLIT 383 (661)
T ss_dssp TTTCHHHHHHHHHGGG
T ss_pred hcCCHHHHHHHHHHHh
Confidence 567888888877663
No 290
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=42.01 E-value=58 Score=30.35 Aligned_cols=7 Identities=29% Similarity=0.202 Sum_probs=3.0
Q ss_pred HHcCCHH
Q 003829 395 EKAGKDE 401 (793)
Q Consensus 395 ~~~g~~~ 401 (793)
+..|+.+
T Consensus 113 ~~~~~~~ 119 (285)
T 1wdy_A 113 AVYGKVK 119 (285)
T ss_dssp HHTTCHH
T ss_pred HHhCCHH
Confidence 3444443
No 291
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=39.78 E-value=2.2e+02 Score=27.14 Aligned_cols=16 Identities=6% Similarity=-0.182 Sum_probs=8.9
Q ss_pred hcCCHHHHHHHHHHHH
Q 003829 615 RRQMVAKTNEILHFMN 630 (793)
Q Consensus 615 ~~g~~~~A~~~~~~~~ 630 (793)
..|++++|+..|+.+.
T Consensus 126 t~gKf~eAl~~Fr~iL 141 (325)
T 3mv2_A 126 KLNKPDIAIECFREAI 141 (325)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHH
Confidence 4555666655555554
No 292
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=39.26 E-value=1.1e+02 Score=26.96 Aligned_cols=21 Identities=10% Similarity=-0.129 Sum_probs=11.0
Q ss_pred HHHccCCHHHHHHHHHHHhhC
Q 003829 752 GYCKLNQRYEAITFVNNLSKL 772 (793)
Q Consensus 752 ~~~~~g~~~~A~~~~~~~~~~ 772 (793)
.|.+.|.+++|.+++++....
T Consensus 123 VCiek~~f~kA~eiLkr~~~~ 143 (235)
T 3bu8_A 123 ICIKNKEFEKASKILKKHMSK 143 (235)
T ss_dssp HHHHTTCHHHHHHHHHHHSTT
T ss_pred HHHHhcchHHHHHHHHHHhcC
Confidence 344555555555555555554
No 293
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=39.23 E-value=51 Score=23.37 Aligned_cols=31 Identities=3% Similarity=0.005 Sum_probs=22.2
Q ss_pred HHHHHHHccCCHHHHHHHHHHHhhCCCCCCH
Q 003829 748 SIVDGYCKLNQRYEAITFVNNLSKLDPHVTK 778 (793)
Q Consensus 748 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 778 (793)
.++..+...|++++|...+-+++...|+|..
T Consensus 22 ~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~ 52 (73)
T 3ax2_A 22 QLGEELLAQGDYEKGVDHLTNAIAVCGQPQQ 52 (73)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCSSCHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCCHHH
Confidence 3556667777777777777777777777655
No 294
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=38.72 E-value=2.1e+02 Score=25.91 Aligned_cols=27 Identities=19% Similarity=0.238 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003829 384 VFTYTTLLSGFEKAGKDESAMKVFEEM 410 (793)
Q Consensus 384 ~~~~~~li~~~~~~g~~~~a~~~~~~~ 410 (793)
.......+..+.+.|+.++|.++|=+.
T Consensus 91 ~~~~r~~v~~L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 91 IVHLKSGTENMIKLGLPEQALDLFLQN 117 (235)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 333344445555555555555554443
No 295
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=38.06 E-value=1.9e+02 Score=24.61 Aligned_cols=38 Identities=16% Similarity=0.280 Sum_probs=29.2
Q ss_pred CCCCCHHHH--HHHHHHHHccCCHHHHHHHHHHHhhCCCC
Q 003829 738 GCKPNQNTY--NSIVDGYCKLNQRYEAITFVNNLSKLDPH 775 (793)
Q Consensus 738 ~~~p~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 775 (793)
+..|-..+| ...+..|...|-.++....+..+.+++|.
T Consensus 201 n~iPGiGSY~va~aa~~yf~lg~~d~s~~lf~~lR~kDP~ 240 (242)
T 3kae_A 201 EHVPGIGSYFISNAARRYFNLGMNDKSKACFELVRRKDPM 240 (242)
T ss_dssp TSTTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HhCCCchhHHHHHHHHHHHhcccchhHHHHHHHHHhcCCC
Confidence 356775555 34556688999999999999999998874
No 296
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=37.33 E-value=2.4e+02 Score=25.61 Aligned_cols=52 Identities=12% Similarity=-0.137 Sum_probs=28.9
Q ss_pred CCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCCCHHHHHH
Q 003829 557 PNELTYSSLLHAYANGREIDQMLALSEEIYSERAFLELKKKGFSPDIPTLNA 608 (793)
Q Consensus 557 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 608 (793)
.+.......+..+.+.|+.++|.++|=+......-..+...+..-|...|..
T Consensus 89 ~~~~~~r~~v~~L~rLg~~~~A~~lfL~~rs~~i~~~~r~l~~~gd~~~Yi~ 140 (235)
T 2d2s_A 89 NEIVHLKSGTENMIKLGLPEQALDLFLQNRSNFIQDLILQIGSVDNPTNYLT 140 (235)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCC--CCSHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCChhHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHH
Confidence 3445555556666777777777777665555444444444444555555543
No 297
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=36.31 E-value=2e+02 Score=29.76 Aligned_cols=64 Identities=11% Similarity=0.138 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCH--HHH-HHHHHHHHccCCHHHHHHHHHHHHHC
Q 003829 604 PTLNAMISIYGRRQMVAKTNEILHFMNDSGF-TPSL--TTY-NTLMYMYSRSENFARAEDVLREILAK 667 (793)
Q Consensus 604 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~--~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~ 667 (793)
..++.+++.|...+.++.|..+..+..--.. .++. ..| -.++..+.-.+++.+|.+.+..+...
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 4556666666666666666666665531100 0111 111 12234444555666666666655543
No 298
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=35.24 E-value=61 Score=30.93 Aligned_cols=18 Identities=28% Similarity=0.425 Sum_probs=11.2
Q ss_pred HccCCHHHHHHHHHHHHH
Q 003829 649 SRSENFARAEDVLREILA 666 (793)
Q Consensus 649 ~~~g~~~~A~~~~~~~~~ 666 (793)
...|++++|+..|+.++.
T Consensus 113 ~t~gKf~eAl~~Fr~iL~ 130 (320)
T 3mkr_B 113 TTVGKFEEAVEKFRSILL 130 (320)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHH
Confidence 445666666666666654
No 299
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=34.33 E-value=2.3e+02 Score=24.65 Aligned_cols=110 Identities=11% Similarity=0.036 Sum_probs=47.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003829 207 DVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLI 286 (793)
Q Consensus 207 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 286 (793)
+...-...+..+.+.|. ..+...+..+.. .++...-...+.++.+.| + .++...+..+.. .+|..+-...+
T Consensus 32 ~~~vR~~A~~~L~~~~~-~~~~~~L~~~l~---~~~~~vr~~a~~aL~~~~-~-~~~~~~L~~~l~---~~~~~vr~~a~ 102 (211)
T 3ltm_A 32 SYYVRRAAAYALGKIGD-ERAVEPLIKALK---DEDAWVRRAAADALGQIG-D-ERAVEPLIKALK---DEDGWVRQSAA 102 (211)
T ss_dssp SHHHHHHHHHHHHHHCC-GGGHHHHHHHTT---CSCHHHHHHHHHHHHHHC-C-GGGHHHHHHHTT---CSSHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCC-ccHHHHHHHHHc---CCCHHHHHHHHHHHHhhC-C-HHHHHHHHHHHc---CCCHHHHHHHH
Confidence 45555555555555555 233444434433 234444445555555555 2 223333333322 23444444444
Q ss_pred HHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 003829 287 SCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRR 329 (793)
Q Consensus 287 ~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 329 (793)
.++.+.++.+ +...+..+.. .++..+-...+.++.+.|+
T Consensus 103 ~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~ 141 (211)
T 3ltm_A 103 VALGQIGDER-AVEPLIKALK---DEDWFVRIAAAFALGEIGD 141 (211)
T ss_dssp HHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCC
T ss_pred HHHHHhCcHH-HHHHHHHHHh---CCCHHHHHHHHHHHHHcCC
Confidence 4444444422 2222222322 2344444444444544444
No 300
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=33.61 E-value=1.6e+02 Score=23.67 Aligned_cols=95 Identities=14% Similarity=0.203 Sum_probs=0.0
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003829 641 YNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRM--KEASRIFSEMRDSGLVPDVITYNTFVASY 718 (793)
Q Consensus 641 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 718 (793)
...++.-|...|+.++|...++++..-.+. ...+...+..++-+.++- +....++..+.+.|+-+.......+...+
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~-~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q~~~Gf~~v~ 88 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERIY 88 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHH
Q ss_pred HhcCC----hHHHHHHHHHHHH
Q 003829 719 AADSL----FVEALDVVRYMIK 736 (793)
Q Consensus 719 ~~~g~----~~~A~~~~~~~~~ 736 (793)
....+ .-.|..++.+++.
T Consensus 89 ~~l~Dl~lDiP~a~~~l~~~v~ 110 (129)
T 2nsz_A 89 NEIPDINLDVPHSYSVLERFVE 110 (129)
T ss_dssp HHHHHHHHHSTTHHHHHHHHHH
T ss_pred hhChHhhcCccchHHHHHHHHH
No 301
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=32.32 E-value=42 Score=30.30 Aligned_cols=14 Identities=29% Similarity=0.159 Sum_probs=7.5
Q ss_pred HHHHHHHcCCHHHH
Q 003829 214 LITTYASNGRYREA 227 (793)
Q Consensus 214 l~~~~~~~g~~~~A 227 (793)
.+...++.|+.+-+
T Consensus 45 ~L~~A~~~~~~~~v 58 (240)
T 3eu9_A 45 LLHWAAINNRIDLV 58 (240)
T ss_dssp HHHHHHHTTCHHHH
T ss_pred HHHHHHHhCCHHHH
Confidence 44455566665433
No 302
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=31.26 E-value=4.3e+02 Score=26.78 Aligned_cols=55 Identities=16% Similarity=0.210 Sum_probs=30.9
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHCCC
Q 003829 361 RDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGK-----DESAMKVFEEMRSAGC 415 (793)
Q Consensus 361 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~-----~~~a~~~~~~~~~~~~ 415 (793)
+.++.+.|+.++.+|.+.|..|....-..++.+.-..|. ...|...++.....|.
T Consensus 267 rgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a~p~a~~~~~~~~~~~~~~g~ 326 (447)
T 3pvs_A 267 RGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVGP 326 (447)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTHHHHHHHHHHHHHHHSCH
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHhCC
Confidence 346777777777777777665554444444444444443 2344455555555553
No 303
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=30.12 E-value=66 Score=29.04 Aligned_cols=13 Identities=23% Similarity=0.253 Sum_probs=5.5
Q ss_pred HhcCChHHHHHHH
Q 003829 325 GKCRRPKEAMQVL 337 (793)
Q Consensus 325 ~~~g~~~~A~~~~ 337 (793)
+..|+.+-+..++
T Consensus 87 ~~~~~~~~~~~Ll 99 (241)
T 1k1a_A 87 CEHRSPTCLRALL 99 (241)
T ss_dssp HHTTCHHHHHHHH
T ss_pred HHcCCHHHHHHHH
Confidence 3444444333333
No 304
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=29.94 E-value=1.9e+02 Score=24.33 Aligned_cols=54 Identities=7% Similarity=0.004 Sum_probs=36.8
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCC--CHHHHHHHHH-H-----HHccCCHHHHHHHHHHHhh
Q 003829 718 YAADSLFVEALDVVRYMIKQGCKP--NQNTYNSIVD-G-----YCKLNQRYEAITFVNNLSK 771 (793)
Q Consensus 718 ~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~-~-----~~~~g~~~~A~~~~~~~~~ 771 (793)
+...|++-+|-++++.+-...-.+ +...|..|++ . ..+.|+...|..++++++.
T Consensus 42 lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 42 LYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344588888888888886543344 3456666666 2 3466888888888888865
No 305
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=29.92 E-value=2.5e+02 Score=23.62 Aligned_cols=52 Identities=4% Similarity=-0.075 Sum_probs=37.4
Q ss_pred hcCChHHHHHHHHHHhhCCCCC--CHHHHHHHHH-H-----HHHcCCHHHHHHHHHHHHH
Q 003829 185 KEGKVSVAASLLHGLHKDGFDI--DVYAYTSLIT-T-----YASNGRYREAVMVFKKMEE 236 (793)
Q Consensus 185 ~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~-~-----~~~~g~~~~A~~~~~~~~~ 236 (793)
..|++-+|-++++.+-.....+ ....|..||. + ..+.|+...|..++.+...
T Consensus 44 n~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 44 NSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred hCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3488888888888876654444 4456666776 2 3468999999999988865
No 306
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=29.30 E-value=4.1e+02 Score=25.92 Aligned_cols=75 Identities=13% Similarity=0.136 Sum_probs=39.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003829 317 YNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGL--LEEAMELKTQMVEIGITPDVFTYTTLLS 392 (793)
Q Consensus 317 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~~~~~~~~~li~ 392 (793)
.+.++.=|...|+.++|.+.++++...... .......+..++-+.++ .+...+++..+...|+-........+..
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~~ 296 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYER 296 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 456666677777777777777777321111 12234444444444332 3556677777776665544433333333
No 307
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=29.04 E-value=2e+02 Score=32.94 Aligned_cols=118 Identities=10% Similarity=0.081 Sum_probs=62.7
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 003829 644 LMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSL 723 (793)
Q Consensus 644 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 723 (793)
++..+...|..+-|.+ +..- ++.+...-..++.+|...|++++|..+|+++-. |+..+......
T Consensus 816 l~~~L~~~~~~~~a~e----L~~~-~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~-gl~~~~~~~~~---------- 879 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQ----LIGW-LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAV---------- 879 (950)
T ss_dssp HHHHHHHTTCHHHHHH----HGGG-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-TTCSSCCSCGG----------
T ss_pred HHHHHHHhcHHHHHHH----HHhh-cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhh-hcccCcccccc----------
Confidence 5556666776665443 3322 344554445667778888888888888877542 33211100000
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHH
Q 003829 724 FVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKE 779 (793)
Q Consensus 724 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 779 (793)
......++.. .+. -.....-|.+++..+.+.|-++-++.+.+.+++.-..++..
T Consensus 880 ~~~~~~ll~~-~e~-~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~ 933 (950)
T 4gq2_M 880 LREFQEIAEK-YHH-QNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDED 933 (950)
T ss_dssp GHHHHHHHHH-TTT-CSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHH
T ss_pred hhhhhhccCc-ccc-cchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCcc
Confidence 0011111111 000 00012356778888888888888888888888764444443
No 308
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=28.74 E-value=5.8e+02 Score=27.47 Aligned_cols=44 Identities=20% Similarity=0.311 Sum_probs=24.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 003829 351 TYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEK 396 (793)
Q Consensus 351 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 396 (793)
.|- +|-.+.+.|++++|.++.++.... +.--...|...+..|+.
T Consensus 155 ~Wa-~IyY~LR~G~~~~A~e~~~~~~~~-~~~~d~~F~~~l~~~~~ 198 (661)
T 2qx5_A 155 IWA-LIFYLLRAGLIKEALQVLVENKAN-IKKVEQSFLTYFKAYAS 198 (661)
T ss_dssp HHH-HHHHHHTTTCHHHHHHHHHHTGGG-C-----CHHHHHHHC--
T ss_pred cHH-HHHHHHhcCCHHHHHHHHHHhhhh-HhhhhHHHHHHHHHHHh
Confidence 453 566777888888888888665432 11111345555666653
No 309
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=28.46 E-value=1.5e+02 Score=30.71 Aligned_cols=65 Identities=15% Similarity=0.185 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCH--HH-HHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003829 673 IISYNTVIFAYCRNGRMKEASRIFSEMRDSGL-VPDV--IT-YNTFVASYAADSLFVEALDVVRYMIKQ 737 (793)
Q Consensus 673 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~--~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~ 737 (793)
...+|.++..|...+.++.|.++..+..--.. .++. .. +..++..+.-.+++.+|.+.+..+..+
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 34566666666666666666666666542000 1111 11 234455566666666666666666543
No 310
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=27.74 E-value=1.2e+02 Score=27.10 Aligned_cols=16 Identities=0% Similarity=-0.164 Sum_probs=6.7
Q ss_pred HhcCChHHHHHHHHHH
Q 003829 325 GKCRRPKEAMQVLREM 340 (793)
Q Consensus 325 ~~~g~~~~A~~~~~~~ 340 (793)
++.|+.+.+..+++.+
T Consensus 17 ~~~g~~~~v~~Ll~~~ 32 (241)
T 1k1a_A 17 VVQGNLPAVHRLVNLF 32 (241)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHH
Confidence 3344444444444433
No 311
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=27.32 E-value=2e+02 Score=25.06 Aligned_cols=97 Identities=12% Similarity=0.087 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHH--cCCCHHHHHHHHHHHHHCCCCCCHHHHHH--HHHHHHhcCC----------------hHHHHHHHH
Q 003829 279 SYTFNTLISCCR--RGSLHEEAAGVFEEMKLAGFSPDKVTYNA--LLDVYGKCRR----------------PKEAMQVLR 338 (793)
Q Consensus 279 ~~~~~~l~~~~~--~~~~~~~A~~~~~~~~~~g~~~~~~~~~~--li~~~~~~g~----------------~~~A~~~~~ 338 (793)
.+.+..+..+++ +.+++.+.+.+++.+.....+.+...-.. +...+.+-.+ ++.|+.+|+
T Consensus 23 Dfyf~~~c~aFR~~r~~dFrq~rdi~eall~~~~~~~a~~~k~i~icQfL~RI~eG~~LD~~Fd~d~~lTPLESAl~v~~ 102 (211)
T 3bqo_A 23 DFLCLSLCRAFRDGRSEDFRRTRNSAEAIIHGLSSLTACQLRTIYICQFLTRIAAGKTLDAQFENDERITPLESALMIWG 102 (211)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHTTTCTTEECSSSTTCCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHcCCCCCCccCCCCCCChHHHHHHHHH
Q ss_pred HHHHcCCCCChhHHHHH----HHHHHhcCCHHHHHHHHHHH
Q 003829 339 EMKINGCLPSIVTYNSL----ISAYARDGLLEEAMELKTQM 375 (793)
Q Consensus 339 ~~~~~~~~~~~~~~~~l----i~~~~~~g~~~~A~~~~~~m 375 (793)
.+.+.-..+-...-..+ +..|.+.|.+++|.++|++.
T Consensus 103 ~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~ 143 (211)
T 3bqo_A 103 SIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERI 143 (211)
T ss_dssp TSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHH
No 312
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=26.23 E-value=2.8e+02 Score=31.67 Aligned_cols=133 Identities=9% Similarity=0.039 Sum_probs=72.7
Q ss_pred HHHHHHhccCCChHHHHHHHHHHHhccCCCCCccchHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 003829 137 LGIVKGLGFHKKTDLALDVFEWFRSCCSKDGNLVLRGSVIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLIT 216 (793)
Q Consensus 137 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 216 (793)
..++..+...|.++.|.++..|... ++....++.+++...|++++|...|+++-. |+..+......
T Consensus 814 ~~l~~~L~~~~~~~~a~eL~~~~~~----------t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~-gl~~~~~~~~~--- 879 (950)
T 4gq2_M 814 TELVEKLFLFKQYNACMQLIGWLNS----------DPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAV--- 879 (950)
T ss_dssp HHHHHHHHHTTCHHHHHHHGGGCCS----------SHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-TTCSSCCSCGG---
T ss_pred HHHHHHHHHhcHHHHHHHHHhhcCC----------ChHHHHHHHHHHHHcCCHHHHHHHHHHHhh-hcccCcccccc---
Confidence 3356667777777777666655432 333346678888888888888888887532 22111000000
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHcC
Q 003829 217 TYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDS----YTFNTLISCCRRG 292 (793)
Q Consensus 217 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~ 292 (793)
.+....++.... . ......-|.-++..+-+.+ .++.++++-+..++.--.-|. ..|..++++.+..
T Consensus 880 -------~~~~~~ll~~~e-~-~~~~~~YY~hV~~LFE~~~-a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~ 949 (950)
T 4gq2_M 880 -------LREFQEIAEKYH-H-QNLLSCYYLHLSKKLFEES-AYIDALEFSLLADASKETDDEDLSIAITHETLKTACAA 949 (950)
T ss_dssp -------GHHHHHHHHHTT-T-CSHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHH
T ss_pred -------hhhhhhccCccc-c-cchhHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhC
Confidence 001111111110 0 0112236777888888888 788888888877764322232 2566677766554
Q ss_pred C
Q 003829 293 S 293 (793)
Q Consensus 293 ~ 293 (793)
|
T Consensus 950 g 950 (950)
T 4gq2_M 950 G 950 (950)
T ss_dssp C
T ss_pred C
Confidence 3
No 313
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=26.11 E-value=1.4e+02 Score=24.80 Aligned_cols=63 Identities=17% Similarity=0.298 Sum_probs=27.8
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHCCCC
Q 003829 642 NTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGR--MKEASRIFSEMRDSGLV 705 (793)
Q Consensus 642 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~ 705 (793)
..++.-|...|+.++|...++++..-. .....+...+..++-+.++ .+....++..+.+.|+-
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~~p~-f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~i 77 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELEVPH-FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 77 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGG-GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCCc-chHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 344555555566666666666653110 0012233333334433221 33445555555554443
No 314
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=25.91 E-value=3.1e+02 Score=28.29 Aligned_cols=79 Identities=10% Similarity=0.042 Sum_probs=58.8
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 003829 641 YNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAA 720 (793)
Q Consensus 641 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 720 (793)
...|++...-...++.|...|.++... .+-+...||.|+-.....|+.-+|.-+|-+.+-. ..|-..+...+...+.+
T Consensus 155 l~~LGDL~RY~~~~~~A~~~Y~~A~~~-~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~-~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 155 LVHLGDIARYRNQTSQAESYYRHAAQL-VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAV-KFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS-SBCCHHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHHHHHHHh-CCCCCchHHHHHHHHhcccccHHHHHHHHHHHhc-CCCChhHHHHHHHHHHH
Confidence 344555555667788999999999986 3445778999998888889888888888887764 45666777777776654
Q ss_pred c
Q 003829 721 D 721 (793)
Q Consensus 721 ~ 721 (793)
.
T Consensus 233 ~ 233 (497)
T 1ya0_A 233 A 233 (497)
T ss_dssp H
T ss_pred H
Confidence 3
No 315
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=25.30 E-value=3.3e+02 Score=23.58 Aligned_cols=16 Identities=13% Similarity=0.063 Sum_probs=6.2
Q ss_pred CHHHHHHHHHHHHhcC
Q 003829 418 NICTFNALIKMHGNRG 433 (793)
Q Consensus 418 ~~~~~~~l~~~~~~~g 433 (793)
+..+-...+.++.+.+
T Consensus 156 ~~~vr~~a~~aL~~~~ 171 (211)
T 3ltm_A 156 DGWVRQSAADALGEIG 171 (211)
T ss_dssp SHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHhC
Confidence 3333333333333333
No 316
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=25.18 E-value=1.7e+02 Score=27.86 Aligned_cols=63 Identities=13% Similarity=0.232 Sum_probs=31.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHCCCC
Q 003829 353 NSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGK--DESAMKVFEEMRSAGCK 416 (793)
Q Consensus 353 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~~~~~~~~ 416 (793)
..++.-|...|+.++|...++++..-... ....+..+..++-+.++ .+....++..+.+.|+-
T Consensus 170 ~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~l 234 (307)
T 2zu6_B 170 DMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTI 234 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCC
Confidence 45666677777777777777776521111 11222333333333222 33455566666555443
No 317
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=24.95 E-value=37 Score=31.40 Aligned_cols=19 Identities=11% Similarity=-0.034 Sum_probs=8.5
Q ss_pred HcCCHHHHHHHHHHHHHcC
Q 003829 220 SNGRYREAVMVFKKMEEEG 238 (793)
Q Consensus 220 ~~g~~~~A~~~~~~~~~~~ 238 (793)
+.|+.+....+++.+.+.|
T Consensus 14 ~~g~~~~v~~ll~~l~~~~ 32 (260)
T 3jxi_A 14 SRGSPDGLEGLLSFLLTHK 32 (260)
T ss_dssp HHTCGGGGTTHHHHHHHHT
T ss_pred HhCCHHHHHHHHHHHHhcC
Confidence 4444444444444444433
No 318
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=24.84 E-value=2.9e+02 Score=22.74 Aligned_cols=58 Identities=9% Similarity=0.153 Sum_probs=25.4
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC
Q 003829 305 MKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDG 363 (793)
Q Consensus 305 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 363 (793)
+.+.|...+ ..-..++..+...+..-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 18 l~~~g~r~T-~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 18 IKKNGLKNS-KQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHCC--CH-HHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHcCCCCC-HHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 444454422 2233444444444555556666666655544444443333333444333
No 319
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=24.44 E-value=2.7e+02 Score=22.97 Aligned_cols=58 Identities=12% Similarity=0.211 Sum_probs=36.7
Q ss_pred HhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 003829 199 LHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMG 257 (793)
Q Consensus 199 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g 257 (793)
+.+.|.. ....-..++..+...+..-.|.++++.+.+.++..+..|...-+..+...|
T Consensus 18 l~~~g~r-~T~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 18 IKKNGLK-NSKQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHCC---CHHHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHcCCC-CCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 3445555 334445566666666666778888888877766667777666667776666
No 320
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=24.10 E-value=5.3e+02 Score=25.50 Aligned_cols=57 Identities=11% Similarity=0.091 Sum_probs=36.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCC----------------CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 003829 610 ISIYGRRQMVAKTNEILHFMNDSG----------------FTPSLTTYNTLMYMYSRSENFARAEDVLREILA 666 (793)
Q Consensus 610 ~~~~~~~g~~~~A~~~~~~~~~~~----------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 666 (793)
+.......+.+++.++++.+...- ...-......++..|...|+.++|..++++...
T Consensus 83 ~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~ 155 (393)
T 4b4t_O 83 LASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEK 155 (393)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 445566678888888888775321 011233445566677778888888888877763
No 321
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=23.65 E-value=1.4e+02 Score=28.00 Aligned_cols=18 Identities=22% Similarity=0.364 Sum_probs=8.0
Q ss_pred HHHHHhcCCHHHHHHHHH
Q 003829 426 IKMHGNRGNFVEMMKVFD 443 (793)
Q Consensus 426 ~~~~~~~g~~~~A~~~~~ 443 (793)
+...+..|+.+-+.-+++
T Consensus 165 L~~A~~~g~~~~v~~Ll~ 182 (285)
T 3kea_A 165 IHITIKNGHVDMMILLLD 182 (285)
T ss_dssp HHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHcChHHHHHHHHH
Confidence 333444555544444443
No 322
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=23.63 E-value=65 Score=29.98 Aligned_cols=15 Identities=20% Similarity=0.224 Sum_probs=6.9
Q ss_pred HHHhcCChHHHHHHH
Q 003829 182 MLGKEGKVSVAASLL 196 (793)
Q Consensus 182 ~~~~~~~~~~A~~~~ 196 (793)
...+.|+++....++
T Consensus 11 ~A~~~g~~~~v~~Ll 25 (285)
T 1wdy_A 11 KAVQNEDVDLVQQLL 25 (285)
T ss_dssp HHHHTTCHHHHHHHH
T ss_pred HHHHcCCHHHHHHHH
Confidence 334556654443333
No 323
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=23.35 E-value=2.6e+02 Score=23.95 Aligned_cols=22 Identities=18% Similarity=0.237 Sum_probs=9.6
Q ss_pred HHcCCHHHHHHHHHHHHHCCCC
Q 003829 395 EKAGKDESAMKVFEEMRSAGCK 416 (793)
Q Consensus 395 ~~~g~~~~a~~~~~~~~~~~~~ 416 (793)
+..|+.+.-.++.+.+++.|..
T Consensus 46 ~~~~~~~~~~~iv~~Ll~~Gad 67 (186)
T 3t8k_A 46 LRNNNDEARYKISMFLINKGAD 67 (186)
T ss_dssp TTCSCHHHHHHHHHHHHHTTCC
T ss_pred HHcCCcchHHHHHHHHHHCCCC
Confidence 3344444344444444444443
No 324
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=22.35 E-value=90 Score=27.09 Aligned_cols=13 Identities=15% Similarity=0.240 Sum_probs=5.6
Q ss_pred HHcCCHHHHHHHH
Q 003829 395 EKAGKDESAMKVF 407 (793)
Q Consensus 395 ~~~g~~~~a~~~~ 407 (793)
+..|+.+-+..++
T Consensus 80 ~~~~~~~~~~~Ll 92 (201)
T 3hra_A 80 GAQGRTEILAYML 92 (201)
T ss_dssp HHTTCHHHHHHHH
T ss_pred HHcCCHHHHHHHH
Confidence 3445544443333
No 325
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=22.26 E-value=4.6e+02 Score=24.04 Aligned_cols=150 Identities=15% Similarity=0.092 Sum_probs=86.3
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHH
Q 003829 621 KTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNG-RMKEASRIFSEM 699 (793)
Q Consensus 621 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~ 699 (793)
.+...+..+.. .++..+-...+.++...|+. ++...+.++.+ .++..+-...+.++...| +...+...+..+
T Consensus 128 ~~~~~L~~~l~---d~~~~vR~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~~~~~~~L~~~ 200 (280)
T 1oyz_A 128 KIVEQSQITAF---DKSTNVRRATAFAISVINDK-ATIPLLINLLK---DPNGDVRNWAAFAININKYDNSDIRDCFVEM 200 (280)
T ss_dssp HHHHHHHHHTT---CSCHHHHHHHHHHHHTC----CCHHHHHHHHT---CSSHHHHHHHHHHHHHHTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHhh---CCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHHhhccCcHHHHHHHHHH
Confidence 44444444443 35666666667777777653 35555555554 345555555555565554 235556666555
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHH
Q 003829 700 RDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKE 779 (793)
Q Consensus 700 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 779 (793)
.+ .++..+-...+.++...|+ .+++..+..+++. ++ .....+.++.+.|+ .++...+.++++..+++ .
T Consensus 201 l~---d~~~~vR~~A~~aL~~~~~-~~~~~~L~~~l~d---~~--vr~~a~~aL~~i~~-~~~~~~L~~~l~~~~~~--~ 268 (280)
T 1oyz_A 201 LQ---DKNEEVRIEAIIGLSYRKD-KRVLSVLCDELKK---NT--VYDDIIEAAGELGD-KTLLPVLDTMLYKFDDN--E 268 (280)
T ss_dssp TT---CSCHHHHHHHHHHHHHTTC-GGGHHHHHHHHTS---SS--CCHHHHHHHHHHCC-GGGHHHHHHHHTTSSCC--H
T ss_pred hc---CCCHHHHHHHHHHHHHhCC-HhhHHHHHHHhcC---cc--HHHHHHHHHHhcCc-hhhhHHHHHHHhcCCCc--H
Confidence 53 3566677777788888885 4566666666643 33 23345666777777 47888888888765543 2
Q ss_pred HHHHHHHHHh
Q 003829 780 LECKLSDRIA 789 (793)
Q Consensus 780 ~~~~l~~~l~ 789 (793)
.....+..+.
T Consensus 269 ~~~~~~~~l~ 278 (280)
T 1oyz_A 269 IITSAIDKLK 278 (280)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhh
Confidence 3344454443
No 326
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=22.12 E-value=1.2e+02 Score=20.80 Aligned_cols=40 Identities=13% Similarity=0.115 Sum_probs=16.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003829 679 VIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYA 719 (793)
Q Consensus 679 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 719 (793)
++..+++..-++++...++++++.|.. +..+|..-.+.++
T Consensus 8 ll~l~Aed~AieDaiy~L~~aL~~g~I-~l~~ylK~vR~La 47 (65)
T 2f6m_A 8 LYNLVAQDYALTDTIEALSRMLHRGTI-PLDTFVKQGRELA 47 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSS-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHH
Confidence 333344434444444444444444432 3334433333333
No 327
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=21.53 E-value=1.5e+02 Score=27.69 Aligned_cols=20 Identities=10% Similarity=0.064 Sum_probs=10.8
Q ss_pred HHHHHHHcCCHHHHHHHHHH
Q 003829 390 LLSGFEKAGKDESAMKVFEE 409 (793)
Q Consensus 390 li~~~~~~g~~~~a~~~~~~ 409 (793)
.+...+..|+.+-+..+++.
T Consensus 164 ~L~~A~~~g~~~~v~~Ll~~ 183 (285)
T 3kea_A 164 CIHITIKNGHVDMMILLLDY 183 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcChHHHHHHHHHc
Confidence 34444556666655555544
No 328
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=21.36 E-value=83 Score=21.15 Aligned_cols=29 Identities=21% Similarity=0.198 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 003829 331 KEAMQVLREMKINGCLPSIVTYNSLISAY 359 (793)
Q Consensus 331 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 359 (793)
++|.+.|.+|++....+..-+|...++..
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 56666666665553333445666666555
No 329
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=21.19 E-value=3.6e+02 Score=22.39 Aligned_cols=24 Identities=21% Similarity=0.277 Sum_probs=13.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 003829 423 NALIKMHGNRGNFVEMMKVFDEIN 446 (793)
Q Consensus 423 ~~l~~~~~~~g~~~~A~~~~~~~~ 446 (793)
..++.-|...|+.++|.+.++++.
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~ 36 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELE 36 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhC
Confidence 445555555566666666665553
No 330
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=21.15 E-value=77 Score=28.44 Aligned_cols=6 Identities=0% Similarity=-0.468 Sum_probs=2.3
Q ss_pred cCCHHH
Q 003829 502 CGSFDQ 507 (793)
Q Consensus 502 ~g~~~~ 507 (793)
.|+.+.
T Consensus 220 ~~~~~~ 225 (240)
T 3eu9_A 220 RKNVWM 225 (240)
T ss_dssp TTCHHH
T ss_pred cCcHHH
Confidence 333333
No 331
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=21.10 E-value=1.3e+02 Score=22.35 Aligned_cols=19 Identities=21% Similarity=0.111 Sum_probs=10.2
Q ss_pred HHHHHHHHHccCCHHHHHH
Q 003829 746 YNSIVDGYCKLNQRYEAIT 764 (793)
Q Consensus 746 ~~~l~~~~~~~g~~~~A~~ 764 (793)
+...+..+.+.|++++|++
T Consensus 18 ~~RrAe~ll~~gkydeAIe 36 (97)
T 2crb_A 18 QSRRADRLLAAGKYEEAIS 36 (97)
T ss_dssp HHHHHHHHHHTTCHHHHHH
T ss_pred hhhHHHHHHhcCCHHHHHH
Confidence 3444555556666666544
No 332
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=20.47 E-value=4.3e+02 Score=23.10 Aligned_cols=12 Identities=17% Similarity=0.224 Sum_probs=4.3
Q ss_pred HHHHHHHHHHHH
Q 003829 331 KEAMQVLREMKI 342 (793)
Q Consensus 331 ~~A~~~~~~~~~ 342 (793)
+.|+-.+-+|++
T Consensus 31 DAAly~LaRml~ 42 (204)
T 2r9g_A 31 DAALHYLARLVE 42 (204)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 333
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=20.24 E-value=4.1e+02 Score=22.68 Aligned_cols=14 Identities=7% Similarity=-0.050 Sum_probs=6.0
Q ss_pred HHHHHHHHHCCCCC
Q 003829 299 AGVFEEMKLAGFSP 312 (793)
Q Consensus 299 ~~~~~~~~~~g~~~ 312 (793)
.++.+.+.+.|..+
T Consensus 94 ~~iv~~Ll~~Gadi 107 (186)
T 3t8k_A 94 TELCKIFLEKGADI 107 (186)
T ss_dssp HHHHHHHHHTTCCS
T ss_pred HHHHHHHHHCCCCC
Confidence 34444444444433
No 334
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=20.13 E-value=1.7e+02 Score=20.17 Aligned_cols=48 Identities=13% Similarity=0.186 Sum_probs=36.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 003829 710 TYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQ 758 (793)
Q Consensus 710 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 758 (793)
.++.++..+++..-.++++..+.++++.| ..+...|..-+..+++..-
T Consensus 4 l~~Qll~l~Aed~AieDaiy~L~~aL~~g-~I~l~~ylK~vR~LaReQF 51 (65)
T 2f6m_A 4 GLNQLYNLVAQDYALTDTIEALSRMLHRG-TIPLDTFVKQGRELARQQF 51 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHH
Confidence 35667777777777899999999999987 5577777776666665533
No 335
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=20.07 E-value=5.1e+02 Score=23.79 Aligned_cols=63 Identities=10% Similarity=0.010 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-ccCCHHHHHHHHHHHHH
Q 003829 604 PTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYS-RSENFARAEDVLREILA 666 (793)
Q Consensus 604 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~ 666 (793)
..+..++...-+.+++++..+..+.+.+.+...+..=-|.|--+|- ..|....+.+++..+.+
T Consensus 32 e~lv~~AKLaeqaeRYddMv~~MK~v~~~~~eLt~EERNLLSvAYKNvIgarR~swRiissieq 95 (261)
T 3ubw_A 32 EDLVYQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAYKNVIGARRASWRIISSIEQ 95 (261)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhccCCchhHHHHHhHHHH
Confidence 3344455566788999999999999998887888777776666662 23445566666665543
Done!