Query 003831
Match_columns 792
No_of_seqs 255 out of 760
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 05:32:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003831.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003831hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4djk_A Probable glutamate/gamm 96.5 0.032 1.1E-06 61.4 15.0 102 220-326 130-239 (511)
2 3gia_A Uncharacterized protein 96.3 0.01 3.4E-07 64.3 9.6 106 194-310 98-208 (444)
3 3l1l_A Arginine/agmatine antip 95.7 0.037 1.3E-06 59.7 10.3 100 201-309 105-210 (445)
4 2l6p_A PHAC1, PHAC2 and PHAD g 20.5 39 0.0013 31.3 1.8 22 762-785 30-51 (124)
5 2bm3_A Type 2 cohesin, scaffol 18.5 32 0.0011 33.7 0.7 11 268-278 45-55 (166)
6 3luu_A Uncharacterized protein 16.2 48 0.0016 29.3 1.3 17 762-778 35-51 (101)
7 2l6n_A Uncharacterized protein 15.8 58 0.002 30.6 1.8 14 762-775 37-50 (132)
8 1nrp_R Receptor based peptide 15.5 49 0.0017 22.6 0.8 17 341-357 4-20 (26)
9 2rdd_B UPF0092 membrane protei 14.4 2.3E+02 0.0078 20.8 4.4 19 500-518 1-19 (37)
10 3bwz_A Cellulosomal scaffoldin 14.0 48 0.0016 32.8 0.7 13 266-278 41-53 (181)
No 1
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=96.50 E-value=0.032 Score=61.41 Aligned_cols=102 Identities=16% Similarity=0.166 Sum_probs=54.2
Q ss_pred EehhHHHHHHHHHhhhcccccccccchhh---H-HHHHHHHHHHhhhhhccccCcceeeecChHHHHHHHHhc--Cccee
Q 003831 220 VVLVAVVILVGLFSLQHYGTDRVGWLFAP---I-VLLWFLLIGGIGMLNIWKYDSSVLKAFSPVYIYRYFRRG--GRDGW 293 (792)
Q Consensus 220 Vv~is~~ILv~LF~iQ~~GT~kvg~~FgP---I-m~vWfl~i~~~GiynI~~~~P~Vl~AlnP~ya~~f~~~~--~~~g~ 293 (792)
...+++++++++..+--+|....+++..- + +++-++.+.++|++.+...+|.-++ .|+ +.+..+ +..+|
T Consensus 130 ~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~~~ 204 (511)
T 4djk_A 130 KTIAALIILWALALTQFGGTKYTARIAKVGFFAGILLPAFILIALAAIYLHSGAPVAIE-MDS----KTFFPDFSKVGTL 204 (511)
T ss_dssp HHHHHHHHHHHHHHHHHTCSSSHHHHTHHHHHHTTHHHHHHHHHHHHHHTC-----------------CCCCCTTSTTTT
T ss_pred HHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc-Ccc----cccCCCcccchHH
Confidence 45678888888889999998877765432 2 2223445556677665543332111 111 111111 23456
Q ss_pred eeecceeeeeccccccccCCCCCC--Ccceehhhh
Q 003831 294 TSLGGIMLSITGTEALFADLAHFP--VSAIQIAFT 326 (792)
Q Consensus 294 ~~LG~V~L~iTGaEALyADlGHFg--~~~Ir~aw~ 326 (792)
..+..++.+.+|-|+.-.=-+-.- +|.+..|-.
T Consensus 205 ~~~~~~~~a~~G~e~~~~~a~E~k~P~k~ip~ai~ 239 (511)
T 4djk_A 205 VVFVAFILSYMGVEASATHVNEMSNPGRDYPLAML 239 (511)
T ss_dssp TTHHHHHHHHTTGGGGTGGGSSSSCCTTTHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHhccCcccchhHHHH
Confidence 667778899999998644333332 344544433
No 2
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=96.33 E-value=0.01 Score=64.25 Aligned_cols=106 Identities=17% Similarity=0.176 Sum_probs=55.5
Q ss_pred cccchhhhhhhhccccccCCCCCCc-eEehhHHHHHHHHHhhhccccccccc---chhhHHHHHHHHHHHhhhhhccccC
Q 003831 194 ILTPAISVLSASGGIKVDHPHMSNG-VVVLVAVVILVGLFSLQHYGTDRVGW---LFAPIVLLWFLLIGGIGMLNIWKYD 269 (792)
Q Consensus 194 viTPAISVLSAVeGl~v~~p~l~~~-~Vv~is~~ILv~LF~iQ~~GT~kvg~---~FgPIm~vWfl~i~~~GiynI~~~~ 269 (792)
+++.|....+..+-+....|...+. +...+++++++++..+.-+|....++ .+..+.++=++.+.+.|+.+. +
T Consensus 98 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~~~~~ii~~~~~~---~ 174 (444)
T 3gia_A 98 VISIALFAKGFAGYFLPLINAPINTFNIAITEIGIVAFFTALNFFGSKAVGRAEFFIVLVKLLILGLFIFAGLITI---H 174 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---C
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---C
Confidence 3445555544444443333332221 23456788888888888899876665 455555555555555565543 3
Q ss_pred cceeee-cChHHHHHHHHhcCcceeeeecceeeeeccccccc
Q 003831 270 SSVLKA-FSPVYIYRYFRRGGRDGWTSLGGIMLSITGTEALF 310 (792)
Q Consensus 270 P~Vl~A-lnP~ya~~f~~~~~~~g~~~LG~V~L~iTGaEALy 310 (792)
|+-+.. ++|.-...+ +..+...+.+.+|-|+.-
T Consensus 175 ~~~~~~~~~~~g~~~~--------~~~~~~~~~a~~G~e~~~ 208 (444)
T 3gia_A 175 PSYVIPDLAPSAVSGM--------IFASAIFFLSYMGFGVIT 208 (444)
T ss_dssp GGGTSCCCSHHHHHHH--------HHHHHHGGGGGTHHHHHH
T ss_pred hhhcCCCCCCcchHHH--------HHHHHHHHHHHHhHHHHH
Confidence 443322 333211111 122344567888998763
No 3
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=95.70 E-value=0.037 Score=59.72 Aligned_cols=100 Identities=17% Similarity=0.194 Sum_probs=46.9
Q ss_pred hhhhhccccccCCCCCCc-eEehhHHHHHHHHHhhhcccccccccc---hhhHHHHHHHHHHHhhhhhccccCccee-ee
Q 003831 201 VLSASGGIKVDHPHMSNG-VVVLVAVVILVGLFSLQHYGTDRVGWL---FAPIVLLWFLLIGGIGMLNIWKYDSSVL-KA 275 (792)
Q Consensus 201 VLSAVeGl~v~~p~l~~~-~Vv~is~~ILv~LF~iQ~~GT~kvg~~---FgPIm~vWfl~i~~~GiynI~~~~P~Vl-~A 275 (792)
..+..+=++...|...++ ....+++++++++..+--+|....+++ +.++.++=++.+.+.|+. ..+|+.+ ..
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~---~~~~~~~~~~ 181 (445)
T 3l1l_A 105 VVIGVGYLSYFFPILKDPWVLTITCVVVLWIFVLLNIVGPKMITRVQAVATVLALIPIVGIAVFGWF---WFRGETYMAA 181 (445)
T ss_dssp HHHHHHHTTTTCGGGGSHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTTST---TCCCCCCCCC
T ss_pred HHHHHHHHHHHCccccccHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhChhhcccc
Confidence 334444444444543322 133466777777788888888777664 444444333334444443 3345443 33
Q ss_pred cChHHHHHHHHhcCcce-eeeecceeeeecccccc
Q 003831 276 FSPVYIYRYFRRGGRDG-WTSLGGIMLSITGTEAL 309 (792)
Q Consensus 276 lnP~ya~~f~~~~~~~g-~~~LG~V~L~iTGaEAL 309 (792)
++|.-.- +..+ +..+..++.+.+|-|+.
T Consensus 182 ~~~~~~~------~~~~~~~~~~~~~~af~G~e~~ 210 (445)
T 3l1l_A 182 WNVSGLG------TFGAIQSTLNVTLWSFIGVESA 210 (445)
T ss_dssp -----------------HHHHHHHHHHTTTTTTHH
T ss_pred cCccCCc------cHHHHHHHHHHHHHHHHhHHHH
Confidence 4442100 0111 12233456677888865
No 4
>2l6p_A PHAC1, PHAC2 and PHAD genes; DUF971, structural genomics, PSI-biology, protein structure initiative, joint center for structural genomics; NMR {Pseudomonas aeruginosa}
Probab=20.50 E-value=39 Score=31.34 Aligned_cols=22 Identities=23% Similarity=0.196 Sum_probs=15.2
Q ss_pred HHHHHhhccCCCcccccCCCCeEe
Q 003831 762 YAFLRKICRENSVIFNVPHESLLN 785 (792)
Q Consensus 762 Y~FLRkN~R~~~~~L~IPh~~LlE 785 (792)
|.|||.||+++...-. .++++.
T Consensus 30 ~~wLRd~Cpcaec~~~--~qr~l~ 51 (124)
T 2l6p_A 30 AEFLRVHSPSAEVQGH--GNPVLQ 51 (124)
T ss_dssp HHHHHHTCCCSSCCSC--CCCCCC
T ss_pred HHHHHhcCCCcccCCC--Cccccc
Confidence 5799999999865543 455543
No 5
>2bm3_A Type 2 cohesin, scaffolding dockerin binding protein A; cellulosome, nuclear protein; 1.8A {Clostridium thermocellum} SCOP: b.2.2.2
Probab=18.49 E-value=32 Score=33.71 Aligned_cols=11 Identities=55% Similarity=0.896 Sum_probs=4.6
Q ss_pred cCcceeeecCh
Q 003831 268 YDSSVLKAFSP 278 (792)
Q Consensus 268 ~~P~Vl~AlnP 278 (792)
|||+||+|.||
T Consensus 45 YDP~VLqaVn~ 55 (166)
T 2bm3_A 45 YDPKVLMAVDP 55 (166)
T ss_dssp CCTTTEEEECT
T ss_pred ECccceEeecC
Confidence 34444444444
No 6
>3luu_A Uncharacterized protein; AFE_2189, PFAM DUF971 family, structural genomics, joint CEN structural genomics, JCSG; HET: MSE; 1.93A {Acidithiobacillus ferrooxidans}
Probab=16.19 E-value=48 Score=29.32 Aligned_cols=17 Identities=18% Similarity=0.212 Sum_probs=9.8
Q ss_pred HHHHHhhccCCCccccc
Q 003831 762 YAFLRKICRENSVIFNV 778 (792)
Q Consensus 762 Y~FLRkN~R~~~~~L~I 778 (792)
|.|||.||+++...-.-
T Consensus 35 ~~wLRd~c~ca~c~~~~ 51 (101)
T 3luu_A 35 FEHLRVECPCAECKGHT 51 (101)
T ss_dssp HHHHHHTCCCC------
T ss_pred HHHHHhhCCChhhcCcc
Confidence 67999999987654433
No 7
>2l6n_A Uncharacterized protein YP_001092504.1; PJ06155C, DUF971, structural genomics, PSI-biology, protein initiative; NMR {Shewanella loihica}
Probab=15.83 E-value=58 Score=30.61 Aligned_cols=14 Identities=21% Similarity=0.199 Sum_probs=11.6
Q ss_pred HHHHHhhccCCCcc
Q 003831 762 YAFLRKICRENSVI 775 (792)
Q Consensus 762 Y~FLRkN~R~~~~~ 775 (792)
|.|||.||+++...
T Consensus 37 ~~wLRd~Cpcaec~ 50 (132)
T 2l6n_A 37 CELLRVYSPSAEVH 50 (132)
T ss_dssp HHHHHHSCSCSSSS
T ss_pred HHHHHhcCCCcccC
Confidence 57999999997654
No 8
>1nrp_R Receptor based peptide NR'S; serine proteinase/receptor; 3.00A {Homo sapiens} PDB: 1nrn_R 1nrq_R*
Probab=15.48 E-value=49 Score=22.59 Aligned_cols=17 Identities=12% Similarity=0.550 Sum_probs=14.5
Q ss_pred hhhhcccCccccccccc
Q 003831 341 AAYLMNHQDHVVDAFYR 357 (792)
Q Consensus 341 gA~ll~~p~~~~npFy~ 357 (792)
-+||++||++.-.||+.
T Consensus 4 rsfllrnpndkyepfwe 20 (26)
T 1nrp_R 4 RSFLLRNPNDKYEPFWE 20 (26)
T ss_pred hhhhhcCCCcccCcccc
Confidence 36899999999999985
No 9
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=14.39 E-value=2.3e+02 Score=20.84 Aligned_cols=19 Identities=16% Similarity=0.308 Sum_probs=10.2
Q ss_pred CCcHHHHHHHHHHHhhhhh
Q 003831 500 GGWVPLVIAAAFLVIMYVW 518 (792)
Q Consensus 500 GGW~pl~la~v~~~iM~~W 518 (792)
|||..++.-++++.+||..
T Consensus 1 ~~~~~~l~~v~~~~ifYFl 19 (37)
T 2rdd_B 1 SPMSLILMLVVFGLIFYFM 19 (37)
T ss_dssp CCCHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHH
Confidence 4565555555555666443
No 10
>3bwz_A Cellulosomal scaffoldin adaptor protein B; cohesins II, cellulosome, structural protein; 1.20A {Acetivibrio cellulolyticus} PDB: 3f2l_A 1qzn_A 1zv9_A*
Probab=13.97 E-value=48 Score=32.79 Aligned_cols=13 Identities=38% Similarity=0.703 Sum_probs=0.0
Q ss_pred cccCcceeeecCh
Q 003831 266 WKYDSSVLKAFSP 278 (792)
Q Consensus 266 ~~~~P~Vl~AlnP 278 (792)
++|||+||+|+||
T Consensus 41 IKYDP~VLQaV~~ 53 (181)
T 3bwz_A 41 MKYDPAVLQPVTS 53 (181)
T ss_dssp EECCTTTEEEECT
T ss_pred cccChhHeeeecC
Done!