Query 003831
Match_columns 792
No_of_seqs 255 out of 760
Neff 4.8
Searched_HMMs 13730
Date Mon Mar 25 05:32:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003831.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/003831hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2yvxa3 f.57.1.1 (A:276-448) M 18.4 30 0.0022 31.7 2.9 123 331-466 12-136 (173)
2 d2e74h1 f.23.27.1 (H:3-29) Pet 14.2 44 0.0032 21.5 1.9 20 501-520 5-24 (27)
3 d1or7a2 a.177.1.1 (A:-1-111) S 12.8 50 0.0036 26.8 2.6 24 750-773 73-96 (113)
4 d2h8pc1 f.14.1.1 (C:22-78) Pot 8.3 58 0.0043 24.6 1.2 41 330-372 14-54 (57)
5 d1f2qa2 b.1.1.4 (A:86-174) IgE 6.8 1.1E+02 0.0079 23.6 2.3 30 597-626 46-75 (89)
6 d1iray2 b.1.1.4 (Y:102-204) Ty 5.9 1.2E+02 0.0088 24.3 2.2 26 599-624 57-82 (103)
7 d1f97a1 b.1.1.1 (A:27-128) Jun 5.8 1.2E+02 0.0084 23.4 1.9 25 602-626 67-91 (102)
8 d2a65a1 f.54.1.1 (A:5-513) Na( 5.3 4.6E+02 0.034 26.3 7.0 85 447-531 347-434 (509)
9 d1krha2 c.25.1.2 (A:206-338) B 5.2 2.1E+02 0.016 23.2 3.4 41 383-423 17-57 (133)
10 d1pw4a_ f.38.1.1 (A:) Glycerol 5.2 8.4E+02 0.061 22.0 8.5 75 437-535 373-447 (447)
No 1
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=18.44 E-value=30 Score=31.70 Aligned_cols=123 Identities=14% Similarity=0.194 Sum_probs=71.4
Q ss_pred HHHHhhhccc--hhhhcccCccccccccccccCcchHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHcCCCCceeEEecC
Q 003831 331 PCLLLAYSGQ--AAYLMNHQDHVVDAFYRSIPDSIYWPVFIVATAAAIVASQATISATFSIIKQALALGCFPRVKVVHTS 408 (792)
Q Consensus 331 P~L~L~Y~GQ--gA~ll~~p~~~~npFy~~~P~~~~~P~~vlAtlAaIIASQA~ISg~FSii~Qai~Lg~fPr~ki~hTS 408 (792)
|-|++|.+|+ +|+++.+-|+.-+-+-. =..+.|+ ++-.+.-++||+.. ++-+++++|-.-+-. .-
T Consensus 12 pWL~i~l~~~~~~a~ii~~Fe~~l~~~~~---La~fiPl--i~~~gGN~G~Qs~t-----i~iR~La~g~i~~~~---~~ 78 (173)
T d2yvxa3 12 RWLVILILTGMVTSSILQGFESVLEAVTA---LAFYVPV--LLGTGGNTGNQSAT-----LIIRALATRDLDLRD---WR 78 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTTTTTTTS---CCCCSHH--HHHHHHHHHHHHHH-----HHHHHHHTTCSCSSS---HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH--HhcCCchHHHHHHH-----HHHHHHhcccccchh---HH
Confidence 4445555554 46677665554332211 1256676 56678889999874 888999999643211 11
Q ss_pred CcccCceeehhhHHHHHHHhhheeEeecCchhhhhhhhchhhHHHHHHHHHHHHHHHH
Q 003831 409 KKFLGQIYIPDINWILMILCIAVTAGFKNQSQIGNAYGTAVVIVMLATTLLMTLIMIL 466 (792)
Q Consensus 409 ~~~~GQIYIP~vNw~Lmi~~l~vv~~F~~s~~l~~AYGiAV~~~M~iTT~L~~lv~~~ 466 (792)
+....++.+-.+|=+.+-..+.....+++...++-+=|++...+|++.+++=+++=..
T Consensus 79 ~~l~kE~~vgll~G~~l~~i~~~~~~~~~~~~l~~vi~~sl~~~~~ia~~~G~~lPll 136 (173)
T d2yvxa3 79 RVFLKEMGVGLLLGLTLSFLLVGKVYWDGHPLLLPVVGVSLVLIVFFANLVGAMLPFL 136 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1233456667777665555554444456656666666666666666666655444333
No 2
>d2e74h1 f.23.27.1 (H:3-29) PetN subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=14.16 E-value=44 Score=21.47 Aligned_cols=20 Identities=35% Similarity=0.886 Sum_probs=15.8
Q ss_pred CcHHHHHHHHHHHhhhhhhH
Q 003831 501 GWVPLVIAAAFLVIMYVWHY 520 (792)
Q Consensus 501 GW~pl~la~v~~~iM~~W~~ 520 (792)
||+.|+.-+.-.+-|..|-+
T Consensus 5 gwv~llvvftwsiamvvwgr 24 (27)
T d2e74h1 5 GWVALLVVFTWSIAMVVWGR 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred hHhHHHHHhhheeeeEEEcc
Confidence 78888887777788888854
No 3
>d1or7a2 a.177.1.1 (A:-1-111) SigmaE factor (RpoE) {Escherichia coli [TaxId: 562]}
Probab=12.76 E-value=50 Score=26.80 Aligned_cols=24 Identities=17% Similarity=0.230 Sum_probs=21.1
Q ss_pred CchhHHHHHHHHHHHHHhhccCCC
Q 003831 750 SKFYKKIAIDYIYAFLRKICRENS 773 (792)
Q Consensus 750 Ss~lKK~vIn~~Y~FLRkN~R~~~ 773 (792)
.+|+.+++-|.+++++|++.|.+.
T Consensus 73 ~~wl~~I~~n~~~d~~R~~~r~~~ 96 (113)
T d1or7a2 73 YTWLYRIAVNTAKNYLVAQGRRPP 96 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCC
Confidence 468999999999999999998754
No 4
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=8.33 E-value=58 Score=24.62 Aligned_cols=41 Identities=17% Similarity=0.267 Sum_probs=26.9
Q ss_pred HHHHHhhhccchhhhcccCccccccccccccCcchHHHHHHHH
Q 003831 330 FPCLLLAYSGQAAYLMNHQDHVVDAFYRSIPDSIYWPVFIVAT 372 (792)
Q Consensus 330 ~P~L~L~Y~GQgA~ll~~p~~~~npFy~~~P~~~~~P~~vlAt 372 (792)
+-++++--++=+.|+..+.. ++.-|.++|+.+.|-++-+.|
T Consensus 14 ~~~i~i~~~s~~~y~~E~~~--~~~~f~sip~a~WWaivT~TT 54 (57)
T d2h8pc1 14 LLVIVLLAGSYLAVLAERGA--PGAQLITYPRALWWACETATT 54 (57)
T ss_dssp HHHHHHHHHHHHHHHHHTTS--TTCCCCSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhcCC--CCccccccchhhhhheeeeec
Confidence 34444445566667777644 233489999999998776544
No 5
>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.82 E-value=1.1e+02 Score=23.58 Aligned_cols=30 Identities=10% Similarity=0.149 Sum_probs=23.5
Q ss_pred CCCceEEEEEecCCCCCEEEEEEEeecccC
Q 003831 597 PEEERFLVKRIGPKNFHMFRCVARYGYKDL 626 (792)
Q Consensus 597 ~~~eR~~v~~~~~~~~~~yr~~~ryGy~d~ 626 (792)
.....+.+..+...+.|.|+|.++.++.+.
T Consensus 46 ~~~~~l~i~~~~~~dsG~Y~C~a~n~~~~~ 75 (89)
T d1f2qa2 46 YENHNISITNATVEDSGTYYCTGKVWQLDY 75 (89)
T ss_dssp CCSSEEEESSCCGGGCEEEEEEEEETTEEE
T ss_pred cccceEEEeeeeeecCcEEEEEEEeCCCCe
Confidence 345678888888777899999999887543
No 6
>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.95 E-value=1.2e+02 Score=24.31 Aligned_cols=26 Identities=27% Similarity=0.582 Sum_probs=21.2
Q ss_pred CceEEEEEecCCCCCEEEEEEEeecc
Q 003831 599 EERFLVKRIGPKNFHMFRCVARYGYK 624 (792)
Q Consensus 599 ~eR~~v~~~~~~~~~~yr~~~ryGy~ 624 (792)
+..+.|..+...+.|.|+|.+++.|.
T Consensus 57 ~~~L~I~~v~~~D~G~Y~C~a~n~~~ 82 (103)
T d1iray2 57 KDRLIVMNVAEKHRGNYTCHASYTYL 82 (103)
T ss_dssp TTEEEESSCCGGGCEEEEEEEEEEET
T ss_pred CCEEEEcccccccCcEEEEEEEECcC
Confidence 45678888888888999999987664
No 7
>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=5.75 E-value=1.2e+02 Score=23.43 Aligned_cols=25 Identities=8% Similarity=0.094 Sum_probs=19.2
Q ss_pred EEEEEecCCCCCEEEEEEEeecccC
Q 003831 602 FLVKRIGPKNFHMFRCVARYGYKDL 626 (792)
Q Consensus 602 ~~v~~~~~~~~~~yr~~~ryGy~d~ 626 (792)
+.+.++...+.|.|+|.++..+.+.
T Consensus 67 L~I~~v~~~D~G~Y~C~a~n~~g~~ 91 (102)
T d1f97a1 67 ITFSSVTRKDNGEYTCMVSEEGGQN 91 (102)
T ss_dssp EEESCCCGGGCEEEEEEEEETTSSS
T ss_pred EEEeECCccCCEEEEEEEEECCCCE
Confidence 4577777778899999998766543
No 8
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]}
Probab=5.29 E-value=4.6e+02 Score=26.27 Aligned_cols=85 Identities=11% Similarity=0.155 Sum_probs=0.0
Q ss_pred chhhHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHHHhhhhcccC--CCcHHHHHHHHHHHhhhhhhHhHH
Q 003831 447 TAVVIVMLATTLLMTLIMI-LVWRCHWILVLIFTALSLVVECTYFSAVLFKVDQ--GGWVPLVIAAAFLVIMYVWHYGTV 523 (792)
Q Consensus 447 iAV~~~M~iTT~L~~lv~~-~vw~~~~~~~~~~~~~F~~ie~~f~sa~l~Kv~~--GGW~pl~la~v~~~iM~~W~~G~~ 523 (792)
.+.+....+.-..++.+.- .-|+++....+...++++..=..+++.+.....| .+=+.+.+.+.+.++...|.||.+
T Consensus 347 ~gl~s~i~~~e~~v~~l~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~l~e~i~v~w~yg~~ 426 (509)
T d2a65a1 347 AGLTSSIAIMQPMIAFLEDELKLSRKHAVLWTAAIVFFSAHLVMFLNKSLDEMDFWAGTIGVVFFGLTELIIFFWIFGAD 426 (509)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHBTTHHHHHHHHTTTHHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHHHHhccccchhHHHHHhcCCchhhhhhheeEEEEhhhhHHHHhcchHHHHHHHHHHHHHHHHHHHHHheeeeEecHH
Q ss_pred HHHHHHHh
Q 003831 524 KRYEFEMH 531 (792)
Q Consensus 524 ~~~~~~~~ 531 (792)
+..+...+
T Consensus 427 r~~~di~~ 434 (509)
T d2a65a1 427 KAWEEINR 434 (509)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
No 9
>d1krha2 c.25.1.2 (A:206-338) Benzoate dioxygenase reductase {Acinetobacter sp. [TaxId: 472]}
Probab=5.23 E-value=2.1e+02 Score=23.22 Aligned_cols=41 Identities=12% Similarity=0.154 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHHcCCCCceeEEecCCcccCceeehhhHHH
Q 003831 383 ISATFSIIKQALALGCFPRVKVVHTSKKFLGQIYIPDINWI 423 (792)
Q Consensus 383 ISg~FSii~Qai~Lg~fPr~ki~hTS~~~~GQIYIP~vNw~ 423 (792)
||-..|+++++.+.+.-+++.++|..+....-+|-.++..+
T Consensus 17 ItP~~s~l~~~~~~~~~~~i~l~~~~r~~~d~~~~~el~~l 57 (133)
T d1krha2 17 IAPFLSMLQVLEQKGSEHPVRLVFGVTQDCDLVALEQLDAL 57 (133)
T ss_dssp HHHHHHHHHHHHHHCCSSCEEEEEEESSGGGCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCceEEEEeecchhHHHHHHHHHHH
No 10
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=5.21 E-value=8.4e+02 Score=21.96 Aligned_cols=75 Identities=15% Similarity=0.040 Sum_probs=0.0
Q ss_pred CchhhhhhhhchhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhcccCCCcHHHHHHHHHHHhhh
Q 003831 437 NQSQIGNAYGTAVVIVMLATTLLMTLIMILVWRCHWILVLIFTALSLVVECTYFSAVLFKVDQGGWVPLVIAAAFLVIMY 516 (792)
Q Consensus 437 ~s~~l~~AYGiAV~~~M~iTT~L~~lv~~~vw~~~~~~~~~~~~~F~~ie~~f~sa~l~Kv~~GGW~pl~la~v~~~iM~ 516 (792)
..+..+.+.|+.-+...+..+++..++.-.+....-+.... |+-...+++...+++
T Consensus 373 p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~------------------------~~~~~~~~~~~~~~~ 428 (447)
T d1pw4a_ 373 PKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGF------------------------MVMIGGSILAVILLI 428 (447)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHH------------------------HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHH------------------------HHHHHHHHHHHHHHH
Q ss_pred hhhHhHHHHHHHHHhcCCC
Q 003831 517 VWHYGTVKRYEFEMHSKVS 535 (792)
Q Consensus 517 ~W~~G~~~~~~~~~~~~~~ 535 (792)
.....++++.+...++..|
T Consensus 429 ~~~~~~~~r~~~~~~e~~P 447 (447)
T d1pw4a_ 429 VVMIGEKRRHEQLLQELVP 447 (447)
T ss_dssp HHHHHHHHHHHGGGGGSCC
T ss_pred HHHHhccccHHHHHHhCCC
Done!