Query 003834
Match_columns 792
No_of_seqs 384 out of 2158
Neff 6.2
Searched_HMMs 46136
Date Thu Mar 28 12:53:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003834.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003834hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2039 Transcriptional coacti 100.0 3.5E-57 7.6E-62 541.7 28.7 654 10-789 3-679 (875)
2 smart00318 SNc Staphylococcal 99.9 7.8E-26 1.7E-30 217.4 17.1 125 617-742 2-137 (138)
3 cd00175 SNc Staphylococcal nuc 99.9 2.2E-25 4.8E-30 211.7 15.0 118 624-743 1-129 (129)
4 smart00318 SNc Staphylococcal 99.9 7.5E-25 1.6E-29 210.5 18.5 131 11-150 2-137 (138)
5 PRK06518 hypothetical protein; 99.9 4.3E-25 9.4E-30 220.3 16.9 128 614-745 20-158 (177)
6 PRK06518 hypothetical protein; 99.9 2.4E-24 5.1E-29 215.0 17.9 138 5-152 17-157 (177)
7 KOG2039 Transcriptional coacti 99.9 2.8E-25 6.1E-30 267.4 12.8 501 9-587 318-864 (875)
8 cd00175 SNc Staphylococcal nuc 99.9 4.2E-24 9.2E-29 202.9 16.5 123 18-150 1-128 (129)
9 COG1525 Micrococcal nuclease ( 99.8 9.6E-21 2.1E-25 192.6 14.9 121 618-744 42-172 (192)
10 PF00565 SNase: Staphylococcal 99.8 7.8E-21 1.7E-25 174.2 11.1 100 643-743 1-108 (108)
11 COG1525 Micrococcal nuclease ( 99.8 2.7E-20 5.9E-25 189.3 14.9 128 12-152 42-172 (192)
12 PF00565 SNase: Staphylococcal 99.8 3E-20 6.4E-25 170.4 10.7 107 42-151 1-108 (108)
13 COG2134 Cdh CDP-diacylglycerol 30.3 67 0.0014 33.5 4.2 50 42-94 81-135 (252)
14 COG0361 InfA Translation initi 29.4 1.4E+02 0.003 26.4 5.4 68 1-95 1-68 (75)
No 1
>KOG2039 consensus Transcriptional coactivator p100 [Transcription]
Probab=100.00 E-value=3.5e-57 Score=541.67 Aligned_cols=654 Identities=45% Similarity=0.716 Sum_probs=559.9
Q ss_pred ceEEEEEeEecCCCEEEEeeCCCCCCCCCceeEEEEEeccCCCCCCCC-CCCChhHHHHHHHHHhhcCCCeEEEEEceec
Q 003834 10 GWYRARVKAVPSGDSLVITALSNPNPGPPREKTLTLSSIITPRLARRG-GLDEPFAWDSREFLRKLCIGKEVTFRVDYAV 88 (792)
Q Consensus 10 ~~~~g~V~~V~dGDTi~v~~~~~~~~g~~~~~~VrLagIdAPe~~~~~-~~~eP~g~eArE~Lr~lliGK~V~v~~~~~~ 88 (792)
....|.|.+|.|||.+.++.. +..+++++.+++|+.+.+|.+.+++ +.++||+|++++|+|++++|+.|.|..++..
T Consensus 3 ~~~~~~v~~v~s~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~d~p~~~~~~~~~~~~~~~k~~~v~~~~~~ 80 (875)
T KOG2039|consen 3 QRLVGYVKAVLSGDAFVIRGS--PRAGPPPEFQINLSNVKAPNEARRDKGVDEPFAWESREFLRKSEIGKEVAVTRDQMS 80 (875)
T ss_pred eEEeeeEEEEeccCccEEEcc--cccCCCCCceEEEeecCCccccccCCCCCCCcChhhHHHHHHHhccceeeeEEeeec
Confidence 345699999999999999984 4568889999999999999999874 3379999999999999999999999999745
Q ss_pred CCCCcEEEEEEeCCccHHHHHHhcCCEEEEEccCcCCCCchhHHHHHHHHHHHHHhCCCCcCCCCCCcccccccCCCCcC
Q 003834 89 PNIGREFGTVILGDKNVAMLVVSEGWAKVKEQGSQKGEASPFLAELLRLEEQAKLQGLGRWSKVPGAAEASIRNLPPSAI 168 (792)
Q Consensus 89 d~~gR~~g~V~l~g~nIn~~LV~~G~A~v~~~~~~~~~~~~~~~~l~~aE~~Ak~~k~GiWs~~~~~~~~~~r~i~~s~~ 168 (792)
..++|.+|.+++++.++++.|+.+||+.+.+... .+.++...+...|.+|++.++|+|+.. ....+++.++
T Consensus 81 ~~~~~e~~~~~~~~~~~a~~lv~~g~~~~~~~~~---~~~~~~~~l~~~~~~~k~~~~g~w~~~----~~~~~~~~~~-- 151 (875)
T KOG2039|consen 81 ANNGREVGFIYLGDENSAESLVKEGLLDVRDEGV---RNSSYFKTLDEVEVQAKQSGRGIWSKL----DHFIRNLKDS-- 151 (875)
T ss_pred cccccccceeecCcchhHHHHHhccCCccccccc---ccchhhhhhhhhhhhhhhhcccccccc----ccceeecccc--
Confidence 5679999999999999999999999999987763 236788999999999999999999932 3356888876
Q ss_pred CCCchhhHHHHHhhhcCCcccEEEEEeccCC-EEEEEEcCCceEEEEEEeeeeCCCCCCCCCccccCcccccCCCccccc
Q 003834 169 GDSSNFNAMALLDANKGRPMQGIVEQARDGS-TLRVYLLPEFQFVQVFVAGIQAPAVARRPAAIVDTDTEETNGDVSAAE 247 (792)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~vVe~V~dGd-t~rv~~~~~~~~i~v~l~GI~~Pe~~~~~~~~~~~~~~~~~g~~~~~~ 247 (792)
...+..|++.+.++++.++||+|++|+ +.||++.++...++++|+|+.||.+..+. ++
T Consensus 152 ----~~~p~~~~~~~~~~~~~~~ve~v~~~~~~~rv~~~p~~~~~~v~lSg~~~P~~~~~s-----------~~------ 210 (875)
T KOG2039|consen 152 ----ALNPAELVDAVGGKPVNAIVEHVRDGEDTVRVLLRPELKYVTVRLSGKRCPSQGPPS-----------DG------ 210 (875)
T ss_pred ----ccccHHHHHhcCCceeeeehhhccChhhhhhHHhccccceeEEecccccCCCCCCCC-----------CC------
Confidence 346688999988999999999999999 68888888778899999999999986532 11
Q ss_pred cccchhhHHHHhhhcccCCCCCCCchhHHHHHHHHHHHccCceEEEEEeeecCCCCEEEEEEecCCCchHHHHHHHHhcc
Q 003834 248 AVAPLNSAQRLAASTASAGQQSTDEPFALDAKYFTEMRVLNREVRIVLEGVDKFKNLIGSVFYPDGETAKDLAMELVENG 327 (792)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~ep~a~eAk~fl~~~ll~r~V~v~~~~~Dkygr~lg~V~~~~g~~~~Dl~~eLL~~G 327 (792)
.+...+||+.+|+.|.+.++++|.+.|.+.+...+-.++|++++++|+ +++.|+.+|
T Consensus 211 -------------------~~~~~~~~~~~a~~f~~~~~~~r~~~i~~~~~~~~~~~~g~v~~~~~~----i~~~~~~~~ 267 (875)
T KOG2039|consen 211 -------------------SPSVPDPFADEAKLFSEDRLLQRAVAIPLESEENYVFFVGDVLYPDGN----IALELLSEG 267 (875)
T ss_pred -------------------CCCCCCcHHHHHHHhcccchhhhceeeeeccccccccccccccccccc----eeeehhccc
Confidence 012458999999999999999999999999998887899999999984 999999999
Q ss_pred ceEEEecccccchHHHHHHHHHHHHHHHHhcccc-ccccCCCCCCccccccceeeEEEEEEEeCCEEEEEeCCCCCCCCc
Q 003834 328 LAKYIEWSANMMEEDAKRRLKAADLQAKKTRLRM-WTNYVPPQSNSKAIHDQNFTGKVVEVVSGDCIIVADDSIPYGNAL 406 (792)
Q Consensus 328 lA~~~~~~~~~~~~~~~~~l~~AE~~Ak~~k~GI-Wk~~~~~~~~~~~~~~k~~~g~V~~V~sGDti~i~~~~~~~~~~~ 406 (792)
++++.+|+...++......++.++..++..+..+ |+++..+....++...+.+.+.|++++.+|++.+..+. |+
T Consensus 268 ~~k~v~~s~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~q~~~s~~~~~~~~~~~~~v~e~~~~d~~~~~~~s---g~-- 342 (875)
T KOG2039|consen 268 LAKCVDWSKNEIPCGAAKKLRAAERLAKEHRLRVLWKNYQVPLSTSESIDDKGFSGKVVEVLVSDCVLVALDS---GS-- 342 (875)
T ss_pred hHHHHHhhhhccCchhhhhhhHHhhccchhHHHHHHhccccccchheeeccccccceeeeeeccCceEEecCC---CC--
Confidence 9999999999887777677999999999999999 99999998888877778899999999999999999865 22
Q ss_pred cceEEEeecccCCCCCCCCCCC--chhhhHHHHHHHHHhhhCCCEEEEEEeeeeeccccccccccCCCCCCCCCCCCCcc
Q 003834 407 AERRVNLSSIRCPKIGNPRKDE--KPAAYAREAREFLRTRLIGRQVNVQMEYSRKVVVEAAPVAAGAKGPAGTKGPAGTK 484 (792)
Q Consensus 407 ~e~~v~Lasi~~P~~~~~~~~~--~~~~~~~eare~lR~~liGk~v~v~~dy~~~~~~~y~~~~~~~~~~~~~~g~~~~~ 484 (792)
+.++.+++|+.|+-+.+.+.. ..-|+..+|++|+|+++||++|.+.++|.++.. +.
T Consensus 343 -~~~~~~~~i~~pr~~~~~~~~~p~~~~~q~~a~~~~~~~~i~~~v~~~~~~~~~~~----------------~~----- 400 (875)
T KOG2039|consen 343 -ENKLFLSSIRLPRAGEPGRSLKPYISPVQLVAREFLRKKLIGKRVILQMDVIRPRR----------------EN----- 400 (875)
T ss_pred -ceEEEeeeccCccccccccccCCccccHHHHhhhhhhhhccCceeeEeeecccccc----------------cc-----
Confidence 788999999999944322222 347999999999999999999999999987631 00
Q ss_pred ccccccCCCCCCCcccccceeeeeeeEEecCCCCCCCCCchhhhhcccCCCCCCcchHHHHHhcCceEEEecCC-ccccc
Q 003834 485 GQAAAKGPAGEESVGATETRIIDFGSIFLLSPIKGEGDDASAVAQSNAAGQPAGVNVAELVVSRGLGNVINHRD-FEERS 563 (792)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~ni~~~lv~~Gla~v~~~~~-~~~~s 563 (792)
+| -..|.+.+. .|.|+++.++.+|++.+.+|++ +..++
T Consensus 401 ------~~-------------~~~c~~~~~----------------------~~~~~a~~~~~kg~~~~v~~~~~~~~~s 439 (875)
T KOG2039|consen 401 ------VP-------------TKVCALPLG----------------------GGKNVAELLVKKGLATVVRKRQDDEQRS 439 (875)
T ss_pred ------cc-------------cccccccCC----------------------CcceeeEEEecccchhhhhhHhhhhhhc
Confidence 00 012223331 3689999999999999999994 67889
Q ss_pred hhHHHHHHHHHHHHHcCCCCCCCCCCCccceeeccccchhhhh-hhchhhhcCCcccEEEEEEecCCEEEEEecCCCceE
Q 003834 564 NYYDALLAAEARAKAGKKGCYSSKEPPVMHIQDLTMAPVKKAR-DFLPFLQRSRRIPAVVEYVLSGHRFKVLIPKETCSI 642 (792)
Q Consensus 564 ~~~~~L~~aE~~A~~~~~G~~~~~~~~~~~~~d~~~~~~~kak-~fl~~l~~~~~~~a~V~~V~DGdT~~V~~~~~~~~i 642 (792)
+.||.|+.+|..|...++|||+.+..+.+.+.+++. ...+.+ .|++++++...+.++|+.+++|..++++++.+.+..
T Consensus 440 ~~~d~ll~~E~~~~~~~~~~~s~~~~~~~~~~~~~~-~i~~n~~~~~~~~~~~~~~~~~v~~~~~gs~~~~~~pk~~~~~ 518 (875)
T KOG2039|consen 440 SHYDLLLVAEAIAIKGKKGCHSKKLDPTLRITDLTV-DIVRNKVQFLPSLDRGNRVEAIVEAVISGSRLRLYIPKETCYC 518 (875)
T ss_pred chhhhhhcchHHHHhhhhhhcccCCCcceeechhhh-hhhcCcEEeehhhccccceeeeeeeeeccccceeccCCcceeE
Confidence 999999999999999999999997766778899976 445555 899999999999999999999999999999999999
Q ss_pred EEEEeeecCCC-------CCchhHHHHHHHHHHHhcCCeEEEEEeeecCCCcEEEEEEeC-CcchHHHHHHhCCeEEeec
Q 003834 643 AFSFSGVRCPG-------RNERYSNEALLLMRQKILQRDVEIEVETVDRTGTFLGSLWES-RTNVAVILLEAGLAKLQTS 714 (792)
Q Consensus 643 ~vrL~GIDaPe-------~~qp~g~eAk~~l~~~ll~r~V~v~~~~~DkyGR~lg~v~~~-~~di~~~Lv~~GlA~v~~~ 714 (792)
++-+.||+||+ .+.||+.+|..|...+++++++++.++.+|..|+++|..|.+ +.++...+++.||++.+
T Consensus 519 ~~~~~g~~~~~~~r~~~~~~e~~~~~~~~~~~~~vl~~~~~l~v~~~~~~~~~l~~~~~~~~~~~s~~~~e~~L~~~~-- 596 (875)
T KOG2039|consen 519 QFALAGIDCPSGARNDVQEGEPFSEEAIEFTRSLVLQREVELEVEITDKNGNFLGSLYEDSKTNLSLKLLEQGLAPEH-- 596 (875)
T ss_pred EEeeccccCcccccccccccCCccHHHHHHhhhheeccceEEEEeeeccCccccccccccccccchhhhhhhhcCccc--
Confidence 99999999997 488999999999999999999999999999999999999998 89999999999999996
Q ss_pred cCCCCCCcHHHHHHHHHHHH-HccCCCCcCCCCC--ccccCccccccccceeEEEEE-Ee---eEEEEEecCc-cchhhh
Q 003834 715 FGSDRIPDSHLLEQAEKSAK-SQKLKIWENYVEG--EEVSNGAAVEGKQKEVLKKFW-EV---ENFMFSKLVI-RKLPQF 786 (792)
Q Consensus 715 y~~~~~~~~~~l~~aE~~Ak-~~k~GlW~~~~p~--~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~-~~~~~~ 786 (792)
|..+.......|..++..|+ ..+.++|..+.++ ++.............+..+.+ || ++||+|..+. .+|+++
T Consensus 597 ~~~e~~~~~~~~~s~~~~ak~~~k~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~i~p~~~F~~q~~~~~~~i~~~ 676 (875)
T KOG2039|consen 597 FAAERSSEYPPLESAELPAKLEQKLKIWLNYVEPVVEEVVLCLEKDERDLNTLKVVVTEITPGKGFYVQSISDGSKITKI 676 (875)
T ss_pred hhhhhhhhccchhhhhhccccchhcceeecccccchhhheecccccccccccceeeEeeecCCCcceeecccchHHHHHH
Confidence 76666666778999999999 9999999999887 443333222345677788888 88 7999999995 778777
Q ss_pred hhc
Q 003834 787 SNN 789 (792)
Q Consensus 787 ~~~ 789 (792)
..+
T Consensus 677 ~~~ 679 (875)
T KOG2039|consen 677 MTN 679 (875)
T ss_pred HHH
Confidence 654
No 2
>smart00318 SNc Staphylococcal nuclease homologues.
Probab=99.94 E-value=7.8e-26 Score=217.40 Aligned_cols=125 Identities=33% Similarity=0.537 Sum_probs=109.4
Q ss_pred cccEEEEEEecCCEEEEEecCCCceEEEEEeeecCCCCC----------chhHHHHHHHHHHHhcCCeEEEEEeeecCCC
Q 003834 617 RIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRN----------ERYSNEALLLMRQKILQRDVEIEVETVDRTG 686 (792)
Q Consensus 617 ~~~a~V~~V~DGdT~~V~~~~~~~~i~vrL~GIDaPe~~----------qp~g~eAk~~l~~~ll~r~V~v~~~~~DkyG 686 (792)
.+.|+|++|+|||||+|.++. +..++|||+||||||.. +|||.+|++||+++|.+++|+|.+.+.|+||
T Consensus 2 ~~~~~V~~V~DGDT~~v~~~~-~~~~~vrL~gIdaPe~~~~~~~~~~~~~~~g~~A~~~l~~~l~g~~V~~~~~~~D~~g 80 (138)
T smart00318 2 EIRGVVERVLDGDTIRVRLPK-NKLITIRLSGIDAPETARPNKGDGTTDEPFGEEAKEFLKKLLLGKKVQVEVDSKDRYG 80 (138)
T ss_pred ceeEEEEEEecCCEEEEEeCC-CCEEEEEEEeccCCccCCCCCCCccccCcHHHHHHHHHHHHhCCCEEEEEEeccCCCC
Confidence 467999999999999998754 46799999999999974 8999999999999999999999999999999
Q ss_pred cEEEEEEeC-CcchHHHHHHhCCeEEeeccCCCCCCcHHHHHHHHHHHHHccCCCCc
Q 003834 687 TFLGSLWES-RTNVAVILLEAGLAKLQTSFGSDRIPDSHLLEQAEKSAKSQKLKIWE 742 (792)
Q Consensus 687 R~lg~v~~~-~~di~~~Lv~~GlA~v~~~y~~~~~~~~~~l~~aE~~Ak~~k~GlW~ 742 (792)
|++|+||++ +.|||++||++|||+++..+..........|.+||++||++|+|||+
T Consensus 81 r~~a~v~~~~~~~l~~~Lv~~G~A~~~~~~~~~~~~~~~~l~~ae~~Ar~~~~GlW~ 137 (138)
T smart00318 81 RFLGTVYLNGGNNIAEELVKEGLAKVYRYADKDEYRVYDELLEAEEAAKKARKGLWS 137 (138)
T ss_pred CEEEEEEECCCCcHHHHHHhcCCEEEEEecCccccHhHHHHHHHHHHHHHhCcCCCC
Confidence 999999996 56799999999999998544322221146899999999999999997
No 3
>cd00175 SNc Staphylococcal nuclease homologues. SNase homologues are found in bacteria, archaea, and eukaryotes. They contain no disufide bonds.
Probab=99.93 E-value=2.2e-25 Score=211.66 Aligned_cols=118 Identities=28% Similarity=0.502 Sum_probs=106.3
Q ss_pred EEecCCEEEEEecCCCceEEEEEeeecCCCC----------CchhHHHHHHHHHHHhcCCeEEEEEeeecCCCcEEEEEE
Q 003834 624 YVLSGHRFKVLIPKETCSIAFSFSGVRCPGR----------NERYSNEALLLMRQKILQRDVEIEVETVDRTGTFLGSLW 693 (792)
Q Consensus 624 ~V~DGdT~~V~~~~~~~~i~vrL~GIDaPe~----------~qp~g~eAk~~l~~~ll~r~V~v~~~~~DkyGR~lg~v~ 693 (792)
+|+|||||+|..++ +..++|||+||||||. .+|||.+|++||++++++++|+|.+.+.|+|||++|+||
T Consensus 1 rV~dGDt~~v~~~~-~~~~~vrL~gId~Pe~~~~~~~~~~~~~~~g~~A~~~l~~~l~~~~V~i~~~~~d~~gr~la~v~ 79 (129)
T cd00175 1 RVIDGDTIRVRLPP-GPLITVRLSGIDAPETARPNKGKSETDEPFGEEAKEFLKKLLLGKKVQVEVDSKDRYGRTLGTVY 79 (129)
T ss_pred CeecCcEEEEEeCC-CCEEEEEEEeecCccccCCccCCCCCCCchHHHHHHHHHHHhCCCEEEEEEccCCCCCCEEEEEE
Confidence 58999999998764 4789999999999997 689999999999999999999999999999999999999
Q ss_pred eCC-cchHHHHHHhCCeEEeeccCCCCCCcHHHHHHHHHHHHHccCCCCcC
Q 003834 694 ESR-TNVAVILLEAGLAKLQTSFGSDRIPDSHLLEQAEKSAKSQKLKIWEN 743 (792)
Q Consensus 694 ~~~-~di~~~Lv~~GlA~v~~~y~~~~~~~~~~l~~aE~~Ak~~k~GlW~~ 743 (792)
+++ .|||++||++|||+++..+. ....+...|.+||++||++|+|||+.
T Consensus 80 ~~~~~~v~~~Lv~~G~A~~~~~~~-~~~~~~~~l~~ae~~Ak~~k~GiW~~ 129 (129)
T cd00175 80 LNGGENIAEELVKEGLARVYRYYP-DDSEYYDELLEAEEAAKKARKGLWSD 129 (129)
T ss_pred eCCCCcHHHHHHhcCCEEEEEECC-CCcHHHHHHHHHHHHHHHhCcCCCCC
Confidence 998 99999999999999985443 22356688999999999999999973
No 4
>smart00318 SNc Staphylococcal nuclease homologues.
Probab=99.93 E-value=7.5e-25 Score=210.55 Aligned_cols=131 Identities=39% Similarity=0.519 Sum_probs=113.7
Q ss_pred eEEEEEeEecCCCEEEEeeCCCCCCCCCceeEEEEEeccCCCCCCCCCC----CChhHHHHHHHHHhhcCCCeEEEEEce
Q 003834 11 WYRARVKAVPSGDSLVITALSNPNPGPPREKTLTLSSIITPRLARRGGL----DEPFAWDSREFLRKLCIGKEVTFRVDY 86 (792)
Q Consensus 11 ~~~g~V~~V~dGDTi~v~~~~~~~~g~~~~~~VrLagIdAPe~~~~~~~----~eP~g~eArE~Lr~lliGK~V~v~~~~ 86 (792)
.+.|+|++|+|||||.|..+. | ...+|||+||||||..+.+.. .+|||.+|++||++++.|+.|+|.++.
T Consensus 2 ~~~~~V~~V~DGDT~~v~~~~----~--~~~~vrL~gIdaPe~~~~~~~~~~~~~~~g~~A~~~l~~~l~g~~V~~~~~~ 75 (138)
T smart00318 2 EIRGVVERVLDGDTIRVRLPK----N--KLITIRLSGIDAPETARPNKGDGTTDEPFGEEAKEFLKKLLLGKKVQVEVDS 75 (138)
T ss_pred ceeEEEEEEecCCEEEEEeCC----C--CEEEEEEEeccCCccCCCCCCCccccCcHHHHHHHHHHHHhCCCEEEEEEec
Confidence 468999999999999999762 2 468999999999999865543 699999999999999999999999885
Q ss_pred ecCCCCcEEEEEEe-CCccHHHHHHhcCCEEEEEccCcCCCCchhHHHHHHHHHHHHHhCCCCcC
Q 003834 87 AVPNIGREFGTVIL-GDKNVAMLVVSEGWAKVKEQGSQKGEASPFLAELLRLEEQAKLQGLGRWS 150 (792)
Q Consensus 87 ~~d~~gR~~g~V~l-~g~nIn~~LV~~G~A~v~~~~~~~~~~~~~~~~l~~aE~~Ak~~k~GiWs 150 (792)
.|+|||.+|+||+ ++.|||++||++|||+++..... .....+.+|.+||++||++++|||+
T Consensus 76 -~D~~gr~~a~v~~~~~~~l~~~Lv~~G~A~~~~~~~~--~~~~~~~~l~~ae~~Ar~~~~GlW~ 137 (138)
T smart00318 76 -KDRYGRFLGTVYLNGGNNIAEELVKEGLAKVYRYADK--DEYRVYDELLEAEEAAKKARKGLWS 137 (138)
T ss_pred -cCCCCCEEEEEEECCCCcHHHHHHhcCCEEEEEecCc--cccHhHHHHHHHHHHHHHhCcCCCC
Confidence 7899999999999 66789999999999999887642 2122267899999999999999997
No 5
>PRK06518 hypothetical protein; Provisional
Probab=99.93 E-value=4.3e-25 Score=220.33 Aligned_cols=128 Identities=16% Similarity=0.177 Sum_probs=110.7
Q ss_pred cCCcccEEEEEEecCCEEEEEecC--CCceEEEEEeeecCCCCCc---------hhHHHHHHHHHHHhcCCeEEEEEeee
Q 003834 614 RSRRIPAVVEYVLSGHRFKVLIPK--ETCSIAFSFSGVRCPGRNE---------RYSNEALLLMRQKILQRDVEIEVETV 682 (792)
Q Consensus 614 ~~~~~~a~V~~V~DGdT~~V~~~~--~~~~i~vrL~GIDaPe~~q---------p~g~eAk~~l~~~ll~r~V~v~~~~~ 682 (792)
....+.|+| .|+|||||+|..+. .+..++|||+||||||..| |||.+|+++|+.++.++.|+|...+
T Consensus 20 ~~~~~~G~v-~V~DGDTl~l~~~~~~~~~~~~VRL~GIDAPE~~Q~c~~~~~~wp~G~~A~~~L~~li~gk~V~~~~~~- 97 (177)
T PRK06518 20 NVVIFHGRA-QVTSGVTFKLIADGWRKEITRDIRLYGVDTCAPRQKARLGDQEWPCGAVATAWLVTKTLNKWLSCRQAR- 97 (177)
T ss_pred ccccccceE-EEEcCCEEEEeeccccCCCCeEEEEEEEcCCCCCCcccCCCCCCcHHHHHHHHHHHHHCCCeEEEEEec-
Confidence 456778988 79999999995321 1236899999999999887 8999999999999999999999877
Q ss_pred cCCCcEEEEEEeCCcchHHHHHHhCCeEEeeccCCCCCCcHHHHHHHHHHHHHccCCCCcCCC
Q 003834 683 DRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLEQAEKSAKSQKLKIWENYV 745 (792)
Q Consensus 683 DkyGR~lg~v~~~~~di~~~Lv~~GlA~v~~~y~~~~~~~~~~l~~aE~~Ak~~k~GlW~~~~ 745 (792)
|+|||++|+||+++.|||++||++||||+|..|.. ......|..+|++||++|+|||+...
T Consensus 98 D~ygR~lA~~~~~g~dln~~mV~~G~A~ay~~~~~--~~~~~~y~~aE~~AR~~k~GLW~~~~ 158 (177)
T PRK06518 98 MENGVHYAQCFVDGVDIAALGLAEGMAVLSKDDHE--DPGPAQYASLEEKARKAYRGLWSSTF 158 (177)
T ss_pred ccCCCEEEEEEECCEEHHHHHHhCCCEEEEeeccC--CCCHHHHHHHHHHHHHhCCCCCCCCC
Confidence 99999999999999999999999999999876532 33456799999999999999999543
No 6
>PRK06518 hypothetical protein; Provisional
Probab=99.92 E-value=2.4e-24 Score=215.03 Aligned_cols=138 Identities=20% Similarity=0.233 Sum_probs=115.1
Q ss_pred CCCCCceEEEEEeEecCCCEEEEeeCCCCCCCCCceeEEEEEeccCCCCCCC---CCCCChhHHHHHHHHHhhcCCCeEE
Q 003834 5 AAAGGGWYRARVKAVPSGDSLVITALSNPNPGPPREKTLTLSSIITPRLARR---GGLDEPFAWDSREFLRKLCIGKEVT 81 (792)
Q Consensus 5 a~~~~~~~~g~V~~V~dGDTi~v~~~~~~~~g~~~~~~VrLagIdAPe~~~~---~~~~eP~g~eArE~Lr~lliGK~V~ 81 (792)
|+.....+.|+| +|+|||||.|...+ . .....++|||+||||||.... ++..+|||.+|+++|+.++.|+.|.
T Consensus 17 ~~~~~~~~~G~v-~V~DGDTl~l~~~~--~-~~~~~~~VRL~GIDAPE~~Q~c~~~~~~wp~G~~A~~~L~~li~gk~V~ 92 (177)
T PRK06518 17 ASNNVVIFHGRA-QVTSGVTFKLIADG--W-RKEITRDIRLYGVDTCAPRQKARLGDQEWPCGAVATAWLVTKTLNKWLS 92 (177)
T ss_pred cccccccccceE-EEEcCCEEEEeecc--c-cCCCCeEEEEEEEcCCCCCCcccCCCCCCcHHHHHHHHHHHHHCCCeEE
Confidence 556667788998 79999999997531 0 001247999999999998754 3467899999999999999999999
Q ss_pred EEEceecCCCCcEEEEEEeCCccHHHHHHhcCCEEEEEccCcCCCCchhHHHHHHHHHHHHHhCCCCcCCC
Q 003834 82 FRVDYAVPNIGREFGTVILGDKNVAMLVVSEGWAKVKEQGSQKGEASPFLAELLRLEEQAKLQGLGRWSKV 152 (792)
Q Consensus 82 v~~~~~~d~~gR~~g~V~l~g~nIn~~LV~~G~A~v~~~~~~~~~~~~~~~~l~~aE~~Ak~~k~GiWs~~ 152 (792)
|.... |+|||.+|+||++|.|||++||++|||+++..+. + ..+...|..+|++||++++|||+.+
T Consensus 93 ~~~~~--D~ygR~lA~~~~~g~dln~~mV~~G~A~ay~~~~--~--~~~~~~y~~aE~~AR~~k~GLW~~~ 157 (177)
T PRK06518 93 CRQAR--MENGVHYAQCFVDGVDIAALGLAEGMAVLSKDDH--E--DPGPAQYASLEEKARKAYRGLWSST 157 (177)
T ss_pred EEEec--ccCCCEEEEEEECCEEHHHHHHhCCCEEEEeecc--C--CCCHHHHHHHHHHHHHhCCCCCCCC
Confidence 99653 8999999999999999999999999999998764 1 2335679999999999999999964
No 7
>KOG2039 consensus Transcriptional coactivator p100 [Transcription]
Probab=99.92 E-value=2.8e-25 Score=267.42 Aligned_cols=501 Identities=27% Similarity=0.336 Sum_probs=367.1
Q ss_pred CceEEEEEeEecCCCEEEEeeCCCCCCCCCceeEEEEEeccCCCCCC-----CCCCCChhHHHHHHHHHhhcCCCeEEEE
Q 003834 9 GGWYRARVKAVPSGDSLVITALSNPNPGPPREKTLTLSSIITPRLAR-----RGGLDEPFAWDSREFLRKLCIGKEVTFR 83 (792)
Q Consensus 9 ~~~~~g~V~~V~dGDTi~v~~~~~~~~g~~~~~~VrLagIdAPe~~~-----~~~~~eP~g~eArE~Lr~lliGK~V~v~ 83 (792)
...+.+.|..++++|++.+...+ | .+.++.++.|..|+.+. +. ..-||+.+|++||++..+|+.|.+.
T Consensus 318 ~~~~~~~v~e~~~~d~~~~~~~s----g--~~~~~~~~~i~~pr~~~~~~~~~p-~~~~~q~~a~~~~~~~~i~~~v~~~ 390 (875)
T KOG2039|consen 318 DKGFSGKVVEVLVSDCVLVALDS----G--SENKLFLSSIRLPRAGEPGRSLKP-YISPVQLVAREFLRKKLIGKRVILQ 390 (875)
T ss_pred cccccceeeeeeccCceEEecCC----C--CceEEEeeeccCccccccccccCC-ccccHHHHhhhhhhhhccCceeeEe
Confidence 44567789999999999999873 3 36789999999999221 11 3689999999999999999999999
Q ss_pred EceecCCCCc---EEEEEEeC-CccHHHHHHhcCCEEEEEccCcCCCCchhHHHHHHHHHHHHHhCCCCcCCCCCCcccc
Q 003834 84 VDYAVPNIGR---EFGTVILG-DKNVAMLVVSEGWAKVKEQGSQKGEASPFLAELLRLEEQAKLQGLGRWSKVPGAAEAS 159 (792)
Q Consensus 84 ~~~~~d~~gR---~~g~V~l~-g~nIn~~LV~~G~A~v~~~~~~~~~~~~~~~~l~~aE~~Ak~~k~GiWs~~~~~~~~~ 159 (792)
.++.++.+.+ ..|.+++. |.++++.++..|++.+.++.......+..|+.|..+|..|...+.|+|+.+... ...
T Consensus 391 ~~~~~~~~~~~~~~~c~~~~~~~~~~a~~~~~kg~~~~v~~~~~~~~~s~~~d~ll~~E~~~~~~~~~~~s~~~~~-~~~ 469 (875)
T KOG2039|consen 391 MDVIRPRRENVPTKVCALPLGGGKNVAELLVKKGLATVVRKRQDDEQRSSHYDLLLVAEAIAIKGKKGCHSKKLDP-TLR 469 (875)
T ss_pred eecccccccccccccccccCCCcceeeEEEecccchhhhhhHhhhhhhcchhhhhhcchHHHHhhhhhhcccCCCc-cee
Confidence 9987663212 56777774 599999999999999988775444556778999999999999999999988651 112
Q ss_pred cccCCCCcCCCCchhhHHHHHhh-hcCCcccEEEEEeccCCEEEEEEcCCceEEEEEEeeeeCCCCCCCCCccccCcccc
Q 003834 160 IRNLPPSAIGDSSNFNAMALLDA-NKGRPMQGIVEQARDGSTLRVYLLPEFQFVQVFVAGIQAPAVARRPAAIVDTDTEE 238 (792)
Q Consensus 160 ~r~i~~s~~~~~~~~~~~~~~~~-~~~~~~~~vVe~V~dGdt~rv~~~~~~~~i~v~l~GI~~Pe~~~~~~~~~~~~~~~ 238 (792)
++.+.-. ...+...|+.. .++..+..+|+.+++|+.++++++.....+++.++|++||+..++.
T Consensus 470 ~~~~~~~-----i~~n~~~~~~~~~~~~~~~~~v~~~~~gs~~~~~~pk~~~~~~~~~~g~~~~~~~r~~---------- 534 (875)
T KOG2039|consen 470 ITDLTVD-----IVRNKVQFLPSLDRGNRVEAIVEAVISGSRLRLYIPKETCYCQFALAGIDCPSGARND---------- 534 (875)
T ss_pred echhhhh-----hhcCcEEeehhhccccceeeeeeeeeccccceeccCCcceeEEEeeccccCccccccc----------
Confidence 2333322 12343455553 5778899999999999999999998899999999999999976621
Q ss_pred cCCCccccccccchhhHHHHhhhcccCCCCCCCchhHHHHHHHHHHHccCceEEEEEeeecCCCCEEEEEEecCCCchHH
Q 003834 239 TNGDVSAAEAVAPLNSAQRLAASTASAGQQSTDEPFALDAKYFTEMRVLNREVRIVLEGVDKFKNLIGSVFYPDGETAKD 318 (792)
Q Consensus 239 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ep~a~eAk~fl~~~ll~r~V~v~~~~~Dkygr~lg~V~~~~g~~~~D 318 (792)
....+||+.+|..|+..+++++++.|.+..+|+.|+++|..+...+.+
T Consensus 535 -----------------------------~~~~e~~~~~~~~~~~~~vl~~~~~l~v~~~~~~~~~l~~~~~~~~~~--- 582 (875)
T KOG2039|consen 535 -----------------------------VQEGEPFSEEAIEFTRSLVLQREVELEVEITDKNGNFLGSLYEDSKTN--- 582 (875)
T ss_pred -----------------------------ccccCCccHHHHHHhhhheeccceEEEEeeeccCcccccccccccccc---
Confidence 135789999999999999999999999999999999999999875655
Q ss_pred HHHHHHhccceEEEecccccchHHHHHHHHHHHHHHH-HhccccccccCCCCCCcc----c---cccceeeEEEEEEEeC
Q 003834 319 LAMELVENGLAKYIEWSANMMEEDAKRRLKAADLQAK-KTRLRMWTNYVPPQSNSK----A---IHDQNFTGKVVEVVSG 390 (792)
Q Consensus 319 l~~eLL~~GlA~~~~~~~~~~~~~~~~~l~~AE~~Ak-~~k~GIWk~~~~~~~~~~----~---~~~k~~~g~V~~V~sG 390 (792)
+...++..||+.++ ++..... ....|..++..|+ ..+.++|.++.++..... . +.......+|..+..+
T Consensus 583 ~s~~~~e~~L~~~~-~~~e~~~--~~~~~~s~~~~ak~~~k~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~i~p~ 659 (875)
T KOG2039|consen 583 LSLKLLEQGLAPEH-FAAERSS--EYPPLESAELPAKLEQKLKIWLNYVEPVVEEVVLCLEKDERDLNTLKVVVTEITPG 659 (875)
T ss_pred chhhhhhhhcCccc-hhhhhhh--hccchhhhhhccccchhcceeecccccchhhheecccccccccccceeeEeeecCC
Confidence 99999999999998 4433222 2358899999999 999999999998843211 1 1112335566666666
Q ss_pred CEEEEEeCCCCCCCCccce--EE-EeecccCCCCC--CCCCCCchhhhHHHHHHHHHhhhCC----CEE-EEEEeeeeec
Q 003834 391 DCIIVADDSIPYGNALAER--RV-NLSSIRCPKIG--NPRKDEKPAAYAREAREFLRTRLIG----RQV-NVQMEYSRKV 460 (792)
Q Consensus 391 Dti~i~~~~~~~~~~~~e~--~v-~Lasi~~P~~~--~~~~~~~~~~~~~eare~lR~~liG----k~v-~v~~dy~~~~ 460 (792)
-.++.+..+... ..++. .+ .+....+|..+ .|+.|..+.+-...+..|.|.++.. ..+ -+.+||++..
T Consensus 660 ~~F~~q~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~p~~gd~c~A~y~~D~qwyRa~i~~V~~~~~~~V~yiDygn~E 737 (875)
T KOG2039|consen 660 KGFYVQSISDGS--KITKIMTNLSQLVELKPPSSGSYTPKRGDLCVAKYSLDGQWYRALIVEVLDPESMEVFYIDYGNIE 737 (875)
T ss_pred CcceeecccchH--HHHHHHHHHHHHhhhcccccCCCCCCCCCeeeeeeccccceeeeeeeeeccCcceeEEEEecCccc
Confidence 788888755311 11111 11 22233444443 4555555555555589999999865 223 3469999999
Q ss_pred cccccccccCCCCCCCCCCCCCccccccccCCCCCCCcccccce----------------eeeeeeEEecCCCCCCCCCc
Q 003834 461 VVEAAPVAAGAKGPAGTKGPAGTKGQAAAKGPAGEESVGATETR----------------IIDFGSIFLLSPIKGEGDDA 524 (792)
Q Consensus 461 ~~~y~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~v~~~~~~~~~~~~~ 524 (792)
..+|.+.++.++++...+++++.|+|++||.|. +.++.+..-+ .+..++.++.
T Consensus 738 ~lp~~~l~~lp~~~~~~p~~a~~~~L~~ik~~~-~~~~~e~~i~~l~~~~~~~~~~~~~~~~i~~~~~~~---------- 806 (875)
T KOG2039|consen 738 TLPFVRLKPLPPHFSLLPPVAQECGLAGIKEPQ-LEDLKEEAIRYLDEDTLGHKCQVNVELRVVGNSLLV---------- 806 (875)
T ss_pred ccccccccCCChHHhcCchHHhhhhhhcccCCc-ccchHHHHHHHHHHHhhcccceeeeeeeeeccceeE----------
Confidence 999999999999999999999999999999997 3333222110 0111111110
Q ss_pred hhhhhcccCCCCCCcchHHHHHh-cCceEEEecCC-ccccchhHHHHHHHHHHHHHcCCCCCCCC
Q 003834 525 SAVAQSNAAGQPAGVNVAELVVS-RGLGNVINHRD-FEERSNYYDALLAAEARAKAGKKGCYSSK 587 (792)
Q Consensus 525 ~~~~~~~~~~~~~g~ni~~~lv~-~Gla~v~~~~~-~~~~s~~~~~L~~aE~~A~~~~~G~~~~~ 587 (792)
|+. -..+..++++.|+. .|+..+ .++. .+.--..-++|..++..|+..++++|--.
T Consensus 807 ---~l~---~~~~~~d~~~~l~~~~~l~~~-~~~~~~~~~q~~~~~~~~~qq~a~~~~~~~~~y~ 864 (875)
T KOG2039|consen 807 ---TLL---YTVEELDVGEELVAVEGLSLV-EQRKTEEVLQALLDQLEKAQQEARKEHLNIWFYG 864 (875)
T ss_pred ---EEe---eecCcCChhHhhhhhcccccc-cccccchHHHHHhhHhhhchhhHHhhhhhhhhhc
Confidence 000 01146789999999 898876 4443 22224567888999999999999999753
No 8
>cd00175 SNc Staphylococcal nuclease homologues. SNase homologues are found in bacteria, archaea, and eukaryotes. They contain no disufide bonds.
Probab=99.92 E-value=4.2e-24 Score=202.88 Aligned_cols=123 Identities=40% Similarity=0.560 Sum_probs=110.0
Q ss_pred EecCCCEEEEeeCCCCCCCCCceeEEEEEeccCCCCCCC----CCCCChhHHHHHHHHHhhcCCCeEEEEEceecCCCCc
Q 003834 18 AVPSGDSLVITALSNPNPGPPREKTLTLSSIITPRLARR----GGLDEPFAWDSREFLRKLCIGKEVTFRVDYAVPNIGR 93 (792)
Q Consensus 18 ~V~dGDTi~v~~~~~~~~g~~~~~~VrLagIdAPe~~~~----~~~~eP~g~eArE~Lr~lliGK~V~v~~~~~~d~~gR 93 (792)
+|+|||||.|.... + ...+|||+||||||+.+. ....+|||.+|++||++++.|+.|+|.++. .|+|||
T Consensus 1 rV~dGDt~~v~~~~----~--~~~~vrL~gId~Pe~~~~~~~~~~~~~~~g~~A~~~l~~~l~~~~V~i~~~~-~d~~gr 73 (129)
T cd00175 1 RVIDGDTIRVRLPP----G--PLITVRLSGIDAPETARPNKGKSETDEPFGEEAKEFLKKLLLGKKVQVEVDS-KDRYGR 73 (129)
T ss_pred CeecCcEEEEEeCC----C--CEEEEEEEeecCccccCCccCCCCCCCchHHHHHHHHHHHhCCCEEEEEEcc-CCCCCC
Confidence 48999999999863 2 578999999999999765 356899999999999999999999999885 789999
Q ss_pred EEEEEEeCC-ccHHHHHHhcCCEEEEEccCcCCCCchhHHHHHHHHHHHHHhCCCCcC
Q 003834 94 EFGTVILGD-KNVAMLVVSEGWAKVKEQGSQKGEASPFLAELLRLEEQAKLQGLGRWS 150 (792)
Q Consensus 94 ~~g~V~l~g-~nIn~~LV~~G~A~v~~~~~~~~~~~~~~~~l~~aE~~Ak~~k~GiWs 150 (792)
.+|+||+++ .+||++||++|||+++..+. ..+.+..+|.+||++||++++|||+
T Consensus 74 ~la~v~~~~~~~v~~~Lv~~G~A~~~~~~~---~~~~~~~~l~~ae~~Ak~~k~GiW~ 128 (129)
T cd00175 74 TLGTVYLNGGENIAEELVKEGLARVYRYYP---DDSEYYDELLEAEEAAKKARKGLWS 128 (129)
T ss_pred EEEEEEeCCCCcHHHHHHhcCCEEEEEECC---CCcHHHHHHHHHHHHHHHhCcCCCC
Confidence 999999977 99999999999999998774 2246889999999999999999997
No 9
>COG1525 Micrococcal nuclease (thermonuclease) homologs [DNA replication, recombination, and repair]
Probab=99.85 E-value=9.6e-21 Score=192.60 Aligned_cols=121 Identities=25% Similarity=0.375 Sum_probs=109.9
Q ss_pred ccEEEEEEecCCEEEEEecCCCceEEEEEeeecCCCCC--------chhHHHHHHHHHHHhcC-CeEEEEEee-ecCCCc
Q 003834 618 IPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRN--------ERYSNEALLLMRQKILQ-RDVEIEVET-VDRTGT 687 (792)
Q Consensus 618 ~~a~V~~V~DGdT~~V~~~~~~~~i~vrL~GIDaPe~~--------qp~g~eAk~~l~~~ll~-r~V~v~~~~-~DkyGR 687 (792)
..+.|.+|.|||||.+... .+..++|||+|||+||.. +|||.+|++||++++.+ +.|++.+.+ .|+|||
T Consensus 42 ~~~~v~~v~dGDT~~v~~~-~~~~~~iRl~gIdaPe~~~~~~~~~~~~~G~~A~~~l~~~l~~~~~v~~~~~~~~d~y~R 120 (192)
T COG1525 42 PDSTVVRVIDGDTLKVRGE-GGQAVKIRLAGIDAPETKQTCAGGKSQPCGEEAREFLRNLLLGRRTVECDLADRKDRYGR 120 (192)
T ss_pred CCCceEEecCCCeEEEecC-CCceeEEEEeccCCCcccccCCcccccchHHHHHHHHHHHhcCCceEEEecCCcccCCCc
Confidence 4678999999999999754 357899999999999985 89999999999999996 889999888 999999
Q ss_pred EEEEEEeCCcchHHHHHHhCCeEEeeccCCCCCCcHHHHHHHHHHHHHccCCCCcCC
Q 003834 688 FLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLEQAEKSAKSQKLKIWENY 744 (792)
Q Consensus 688 ~lg~v~~~~~di~~~Lv~~GlA~v~~~y~~~~~~~~~~l~~aE~~Ak~~k~GlW~~~ 744 (792)
++|+|+.+++|||.+||++|||++|. +..+...|.+||+.||++++|||+..
T Consensus 121 ~la~v~~~~~~v~~~lV~~G~A~~~~-----~~~~~~~~~~ae~~Ar~~~~GiW~~~ 172 (192)
T COG1525 121 LLAYVTVDGTDVNLELVKEGLARVYY-----NSEYGGEYAEAEEEARKRRLGIWSDD 172 (192)
T ss_pred EEEEEEECCEEHHHHHHhCCCEEEec-----cccchHHHHHHHHHHHHcccCccCCC
Confidence 99999999999999999999999983 34556789999999999999999986
No 10
>PF00565 SNase: Staphylococcal nuclease homologue; InterPro: IPR006021 Staphylococcus aureus nuclease (SNase) homologues, previously thought to be restricted to bacteria and archaea, are also in eukaryotes. Staphylococcal nuclease has multidomain organisation []. The human cellular coactivator p100 contains four repeats, each of which is a SNase homologue. These repeats are unlikely to possess SNase-like activities as each lacks equivalent SNase catalytic residues, yet they may mediate p100's single-stranded DNA-binding function []. alA variety of proteins including many that are still uncharacterised belong to this group.; GO: 0003676 nucleic acid binding, 0016788 hydrolase activity, acting on ester bonds; PDB: 2PZT_A 2KQ3_A 2PZU_A 2PW5_A 2KHS_B 3QON_A 3QOJ_A 2OXP_A 3QOL_A 2PYK_A ....
Probab=99.84 E-value=7.8e-21 Score=174.23 Aligned_cols=100 Identities=31% Similarity=0.509 Sum_probs=88.9
Q ss_pred EEEEeeecCCCCC------chhHHHHHHHHHHHhcCCeEEEEEeee--cCCCcEEEEEEeCCcchHHHHHHhCCeEEeec
Q 003834 643 AFSFSGVRCPGRN------ERYSNEALLLMRQKILQRDVEIEVETV--DRTGTFLGSLWESRTNVAVILLEAGLAKLQTS 714 (792)
Q Consensus 643 ~vrL~GIDaPe~~------qp~g~eAk~~l~~~ll~r~V~v~~~~~--DkyGR~lg~v~~~~~di~~~Lv~~GlA~v~~~ 714 (792)
+|||+||||||.. +|||.+|++|+++++++++|.+.+.+. |+|||++|+|++++.+||++||++|||+++..
T Consensus 1 ~vrL~gI~~Pe~~~~~~~~~~~~~~A~~~l~~~l~~~~~~~~~~~~~~d~~gr~~~~v~~~~~~in~~Ll~~GlA~v~~~ 80 (108)
T PF00565_consen 1 KVRLAGIDAPETNQPDKPEEPYGQEAKEFLRELLLGRQVVVEVDDIKQDKYGRLLAYVYVDGEDINEELLEEGLARVYRR 80 (108)
T ss_dssp EEEETTEE-SSSTCCCTTTSTTHHHHHHHHHHHHHTCSCEEEEEESSBSTTSCEEEEEEETTEEHHHHHHHTTSSEE-CG
T ss_pred CEEEEEEECCCCCCCCCccchHHHHHHHHHHHHhCCCeeeecccccCCCCCCceeEEEEEechhhhHHHHhCCeEEEEEe
Confidence 6999999999976 899999999999999999999999887 99999999999999999999999999999854
Q ss_pred cCCCCCCcHHHHHHHHHHHHHccCCCCcC
Q 003834 715 FGSDRIPDSHLLEQAEKSAKSQKLKIWEN 743 (792)
Q Consensus 715 y~~~~~~~~~~l~~aE~~Ak~~k~GlW~~ 743 (792)
+.. ...+...|..||++||++|+|||++
T Consensus 81 ~~~-~~~~~~~~~~ae~~A~~~k~GiW~~ 108 (108)
T PF00565_consen 81 YPS-NSEYYASLLQAEEEARKAKKGIWSE 108 (108)
T ss_dssp BTT-BCTTHHHHHHHHHHHHHTT-GGGCT
T ss_pred cCC-CcHHHHHHHHHHHHHHHhCcCCCCC
Confidence 432 4567788999999999999999985
No 11
>COG1525 Micrococcal nuclease (thermonuclease) homologs [DNA replication, recombination, and repair]
Probab=99.84 E-value=2.7e-20 Score=189.29 Aligned_cols=128 Identities=30% Similarity=0.452 Sum_probs=112.9
Q ss_pred EEEEEeEecCCCEEEEeeCCCCCCCCCceeEEEEEeccCCCCCCC--CCCCChhHHHHHHHHHhhcCC-CeEEEEEceec
Q 003834 12 YRARVKAVPSGDSLVITALSNPNPGPPREKTLTLSSIITPRLARR--GGLDEPFAWDSREFLRKLCIG-KEVTFRVDYAV 88 (792)
Q Consensus 12 ~~g~V~~V~dGDTi~v~~~~~~~~g~~~~~~VrLagIdAPe~~~~--~~~~eP~g~eArE~Lr~lliG-K~V~v~~~~~~ 88 (792)
..+.|.+|+|||||.+.... + ...+|||.||||||..+. ++..+|||.+|++||++++.+ +.|.|......
T Consensus 42 ~~~~v~~v~dGDT~~v~~~~----~--~~~~iRl~gIdaPe~~~~~~~~~~~~~G~~A~~~l~~~l~~~~~v~~~~~~~~ 115 (192)
T COG1525 42 PDSTVVRVIDGDTLKVRGEG----G--QAVKIRLAGIDAPETKQTCAGGKSQPCGEEAREFLRNLLLGRRTVECDLADRK 115 (192)
T ss_pred CCCceEEecCCCeEEEecCC----C--ceeEEEEeccCCCcccccCCcccccchHHHHHHHHHHHhcCCceEEEecCCcc
Confidence 35789999999999999873 2 578999999999999865 467899999999999999997 88888876326
Q ss_pred CCCCcEEEEEEeCCccHHHHHHhcCCEEEEEccCcCCCCchhHHHHHHHHHHHHHhCCCCcCCC
Q 003834 89 PNIGREFGTVILGDKNVAMLVVSEGWAKVKEQGSQKGEASPFLAELLRLEEQAKLQGLGRWSKV 152 (792)
Q Consensus 89 d~~gR~~g~V~l~g~nIn~~LV~~G~A~v~~~~~~~~~~~~~~~~l~~aE~~Ak~~k~GiWs~~ 152 (792)
|+|||.+|+||.+|.|||++||++|||+++. . ..+...|.++|+.||++++|||+..
T Consensus 116 d~y~R~la~v~~~~~~v~~~lV~~G~A~~~~-~------~~~~~~~~~ae~~Ar~~~~GiW~~~ 172 (192)
T COG1525 116 DRYGRLLAYVTVDGTDVNLELVKEGLARVYY-N------SEYGGEYAEAEEEARKRRLGIWSDD 172 (192)
T ss_pred cCCCcEEEEEEECCEEHHHHHHhCCCEEEec-c------ccchHHHHHHHHHHHHcccCccCCC
Confidence 8999999999999999999999999999988 1 2356789999999999999999985
No 12
>PF00565 SNase: Staphylococcal nuclease homologue; InterPro: IPR006021 Staphylococcus aureus nuclease (SNase) homologues, previously thought to be restricted to bacteria and archaea, are also in eukaryotes. Staphylococcal nuclease has multidomain organisation []. The human cellular coactivator p100 contains four repeats, each of which is a SNase homologue. These repeats are unlikely to possess SNase-like activities as each lacks equivalent SNase catalytic residues, yet they may mediate p100's single-stranded DNA-binding function []. alA variety of proteins including many that are still uncharacterised belong to this group.; GO: 0003676 nucleic acid binding, 0016788 hydrolase activity, acting on ester bonds; PDB: 2PZT_A 2KQ3_A 2PZU_A 2PW5_A 2KHS_B 3QON_A 3QOJ_A 2OXP_A 3QOL_A 2PYK_A ....
Probab=99.82 E-value=3e-20 Score=170.37 Aligned_cols=107 Identities=29% Similarity=0.497 Sum_probs=94.7
Q ss_pred EEEEEeccCCCCCCCCCCCChhHHHHHHHHHhhcCCCeEEEEEcee-cCCCCcEEEEEEeCCccHHHHHHhcCCEEEEEc
Q 003834 42 TLTLSSIITPRLARRGGLDEPFAWDSREFLRKLCIGKEVTFRVDYA-VPNIGREFGTVILGDKNVAMLVVSEGWAKVKEQ 120 (792)
Q Consensus 42 ~VrLagIdAPe~~~~~~~~eP~g~eArE~Lr~lliGK~V~v~~~~~-~d~~gR~~g~V~l~g~nIn~~LV~~G~A~v~~~ 120 (792)
+|||+|||||+..+.+...+|||.+|++||++++.++.|.+.+... .|.+||.+|+||+++.+||++||++|||+++..
T Consensus 1 ~vrL~gI~~Pe~~~~~~~~~~~~~~A~~~l~~~l~~~~~~~~~~~~~~d~~gr~~~~v~~~~~~in~~Ll~~GlA~v~~~ 80 (108)
T PF00565_consen 1 KVRLAGIDAPETNQPDKPEEPYGQEAKEFLRELLLGRQVVVEVDDIKQDKYGRLLAYVYVDGEDINEELLEEGLARVYRR 80 (108)
T ss_dssp EEEETTEE-SSSTCCCTTTSTTHHHHHHHHHHHHHTCSCEEEEEESSBSTTSCEEEEEEETTEEHHHHHHHTTSSEE-CG
T ss_pred CEEEEEEECCCCCCCCCccchHHHHHHHHHHHHhCCCeeeecccccCCCCCCceeEEEEEechhhhHHHHhCCeEEEEEe
Confidence 6999999999998877789999999999999999999999988764 689999999999999999999999999999885
Q ss_pred cCcCCCCchhHHHHHHHHHHHHHhCCCCcCC
Q 003834 121 GSQKGEASPFLAELLRLEEQAKLQGLGRWSK 151 (792)
Q Consensus 121 ~~~~~~~~~~~~~l~~aE~~Ak~~k~GiWs~ 151 (792)
.. ....++..|..||++||+.++|||++
T Consensus 81 ~~---~~~~~~~~~~~ae~~A~~~k~GiW~~ 108 (108)
T PF00565_consen 81 YP---SNSEYYASLLQAEEEARKAKKGIWSE 108 (108)
T ss_dssp BT---TBCTTHHHHHHHHHHHHHTT-GGGCT
T ss_pred cC---CCcHHHHHHHHHHHHHHHhCcCCCCC
Confidence 53 24567899999999999999999984
No 13
>COG2134 Cdh CDP-diacylglycerol pyrophosphatase [Lipid metabolism]
Probab=30.34 E-value=67 Score=33.52 Aligned_cols=50 Identities=24% Similarity=0.447 Sum_probs=36.7
Q ss_pred EEEEEeccCCCCCCCCCCCCh-hHHHHHHHHHhhcC----CCeEEEEEceecCCCCcE
Q 003834 42 TLTLSSIITPRLARRGGLDEP-FAWDSREFLRKLCI----GKEVTFRVDYAVPNIGRE 94 (792)
Q Consensus 42 ~VrLagIdAPe~~~~~~~~eP-~g~eArE~Lr~lli----GK~V~v~~~~~~d~~gR~ 94 (792)
+.|+.||..|-+-...++.-- -+|.||.|..+++. ..-|.+.+. +++||.
T Consensus 81 t~rItGiEsP~L~e~atpNyf~~AWqAR~fms~kyg~~ipd~dvsLaIN---s~~gRt 135 (252)
T COG2134 81 TARITGIESPLLLEPATPNYFYLAWQARDFMSKKYGNPIPDSDVSLAIN---SKNGRT 135 (252)
T ss_pred eecccCCcChhhcCCCCccHHHHHHHHHHHHHHHhCCCCCccceEEEec---CccCcc
Confidence 889999999999755444433 49999999999984 345666655 445665
No 14
>COG0361 InfA Translation initiation factor 1 (IF-1) [Translation, ribosomal structure and biogenesis]
Probab=29.44 E-value=1.4e+02 Score=26.37 Aligned_cols=68 Identities=16% Similarity=0.134 Sum_probs=46.0
Q ss_pred CCCCCCCCCceEEEEEeEecCCCEEEEeeCCCCCCCCCceeEEEEEeccCCCCCCCCCCCChhHHHHHHHHHhhcCCCeE
Q 003834 1 MATPAAAGGGWYRARVKAVPSGDSLVITALSNPNPGPPREKTLTLSSIITPRLARRGGLDEPFAWDSREFLRKLCIGKEV 80 (792)
Q Consensus 1 ~~~~a~~~~~~~~g~V~~V~dGDTi~v~~~~~~~~g~~~~~~VrLagIdAPe~~~~~~~~eP~g~eArE~Lr~lliGK~V 80 (792)
|+.| ....+.|+|++++.++.|.|...+ | .++++.|-- ++.. .+ -.++.|..|
T Consensus 1 m~~~---d~~e~~g~V~e~L~~~~f~v~~ed----g-----~~~~ahI~G-Kmr~-------------~~-i~I~~GD~V 53 (75)
T COG0361 1 MAKP---DEIEMEGTVIEMLPNGRFRVELEN----G-----HERLAHISG-KMRK-------------NR-IRILPGDVV 53 (75)
T ss_pred Cccc---cccEEEEEEEEecCCCEEEEEecC----C-----cEEEEEccC-cchh-------------ee-EEeCCCCEE
Confidence 4555 567889999999999999999974 4 678888732 2210 01 124579999
Q ss_pred EEEEceecCCCCcEE
Q 003834 81 TFRVDYAVPNIGREF 95 (792)
Q Consensus 81 ~v~~~~~~d~~gR~~ 95 (792)
.|++-...+..||..
T Consensus 54 ~Ve~~~~d~~kg~I~ 68 (75)
T COG0361 54 LVELSPYDLTKGRIV 68 (75)
T ss_pred EEEecccccccccEE
Confidence 999764334446654
Done!