Query 003834
Match_columns 792
No_of_seqs 384 out of 2158
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 05:38:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003834.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003834hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bdl_A Staphylococcal nuclease 100.0 9.1E-61 3.1E-65 557.2 37.0 502 7-578 20-569 (570)
2 3bdl_A Staphylococcal nuclease 100.0 2.1E-58 7E-63 537.4 37.0 347 377-789 22-395 (570)
3 4eqp_A Thermonuclease; staphyl 100.0 1.1E-28 3.9E-33 238.0 14.9 129 616-747 8-140 (143)
4 4eqp_A Thermonuclease; staphyl 99.9 2.9E-27 1E-31 228.1 14.2 132 7-154 5-139 (143)
5 2wac_A CG7008-PA; unknown func 99.6 1.7E-15 5.9E-20 154.7 14.1 125 617-744 68-217 (218)
6 2wac_A CG7008-PA; unknown func 99.5 6.2E-14 2.1E-18 143.1 14.4 132 8-151 65-216 (218)
7 2hqx_A P100 CO-activator tudor 99.4 6.9E-14 2.4E-18 146.0 4.3 132 617-750 81-238 (246)
8 2hqx_A P100 CO-activator tudor 99.3 2.2E-12 7.6E-17 134.5 4.7 135 8-153 78-233 (246)
9 4b9w_A TDRD1, tudor domain-con 96.2 0.029 9.8E-07 56.3 11.5 100 7-116 78-198 (201)
10 4b9x_A TDRD1, tudor domain-con 96.2 0.021 7.2E-07 58.4 10.5 119 185-332 80-200 (226)
11 4b9x_A TDRD1, tudor domain-con 95.9 0.054 1.8E-06 55.3 12.2 91 618-711 83-199 (226)
12 4b9w_A TDRD1, tudor domain-con 95.9 0.027 9.1E-07 56.5 9.5 117 185-330 80-198 (201)
13 3ntk_A Maternal protein tudor; 92.9 0.34 1.1E-05 47.1 9.0 89 7-109 60-166 (169)
14 3ntk_A Maternal protein tudor; 92.0 0.6 2.1E-05 45.3 9.5 82 618-703 65-166 (169)
15 2diq_A Tudor and KH domain-con 68.6 0.31 1.1E-05 44.0 -3.5 73 423-495 32-109 (110)
16 3fdr_A Tudor and KH domain-con 32.0 2.2 7.5E-05 37.1 -4.2 59 423-481 27-90 (94)
No 1
>3bdl_A Staphylococcal nuclease domain-containing protein 1; staphylococcal nuclease OB fold, tudor domain, cytoplasm, HOST-virus interaction, nucleus; HET: CIT; 1.90A {Homo sapiens}
Probab=100.00 E-value=9.1e-61 Score=557.17 Aligned_cols=502 Identities=27% Similarity=0.337 Sum_probs=367.2
Q ss_pred CCCceEEEEEeEecCCCEEEEeeCCCCCCCCCceeEEEEEeccCCCCCCCCC----------CCChhHHHHHHHHHhhcC
Q 003834 7 AGGGWYRARVKAVPSGDSLVITALSNPNPGPPREKTLTLSSIITPRLARRGG----------LDEPFAWDSREFLRKLCI 76 (792)
Q Consensus 7 ~~~~~~~g~V~~V~dGDTi~v~~~~~~~~g~~~~~~VrLagIdAPe~~~~~~----------~~eP~g~eArE~Lr~lli 76 (792)
+....+.|+|++|+|||||+|...+ | ++++|||+||||||+.++++ .++|||++||+|||++++
T Consensus 20 ~~~~~~~~~V~~V~DGDTi~v~~~~----g--~~~~VRL~gIdaPe~~~~~~~~~~~~~~~~~~~p~g~eA~e~L~~~l~ 93 (570)
T 3bdl_A 20 HMDKQFVAKVMQVLNADAIVVKLNS----G--DYKTIHLSSIRPPRLEGENTQDKNKKLRPLYDIPYMFEAREFLRKKLI 93 (570)
T ss_dssp -CCSEEEEEEEEEETTTEEEEECTT----S--CEEEEEETTEECCCCTTSCCGGGTTTCCHHHHSTTHHHHHHHHHHHHT
T ss_pred cCCcEEEEEEEEEccCCEEEEECCC----C--CEEEEEEEEEcCCCcCCCCCccccccccCcccchhHHHHHHHHHHHhC
Confidence 3457889999999999999998642 3 57899999999999965432 479999999999999999
Q ss_pred CCeEEEEEce---------ecCCCC-cEEEEEEeCCccHHHHHHhcCCEEEEEccCcCCCCchhHHHHHHHHHHHHHhCC
Q 003834 77 GKEVTFRVDY---------AVPNIG-REFGTVILGDKNVAMLVVSEGWAKVKEQGSQKGEASPFLAELLRLEEQAKLQGL 146 (792)
Q Consensus 77 GK~V~v~~~~---------~~d~~g-R~~g~V~l~g~nIn~~LV~~G~A~v~~~~~~~~~~~~~~~~l~~aE~~Ak~~k~ 146 (792)
||+|+|.+++ .+|+|| |.+|+||++|.|||++||++|||++++++....+++.+|++|.+||++||++++
T Consensus 94 gk~V~~~~~~~~~~~~~~~~~D~yg~R~la~v~~~g~~v~~~lv~~G~A~v~~~~~~~~~~~~~~~~l~~aE~~A~~~~~ 173 (570)
T 3bdl_A 94 GKKVNVTVDYIRPASPATETVPAFSERTCATVTIGGINIAEALVSKGLATVIRYRQDDDQRSSHYDELLAAEARAIKNGK 173 (570)
T ss_dssp TCEEEEEEEEEESSCCCSSCSSSSCCEEEEEEEETTEEHHHHHHHTTSSEECCCSSTTSCCCTTHHHHHHHHHHHHHTTC
T ss_pred CCEEEEEEEeeccccccccccCCCCceEEEEEccCCccHHHHHHhCcCEEEEeecCCccccChHHHHHHHHHHHHHHhCC
Confidence 9999999997 468999 999999999999999999999999987531112346678999999999999999
Q ss_pred CCcCCCCCCcccccccCCCCcCCCCchhhHHHHHhh-hcCCcccEEEEEeccCCEEEEEEcCCceEEEEEEeeeeCCCCC
Q 003834 147 GRWSKVPGAAEASIRNLPPSAIGDSSNFNAMALLDA-NKGRPMQGIVEQARDGSTLRVYLLPEFQFVQVFVAGIQAPAVA 225 (792)
Q Consensus 147 GiWs~~~~~~~~~~r~i~~s~~~~~~~~~~~~~~~~-~~~~~~~~vVe~V~dGdt~rv~~~~~~~~i~v~l~GI~~Pe~~ 225 (792)
|||+.+++++. .++++.++ ..++++|++. ++++.+.|+|++|+|||||+|++++++..++|||+||||||+.
T Consensus 174 GlW~~~~~~~~-~~~d~~~~------~~~~~~~l~~~~~~~~~~~~V~~V~DGDT~~v~~~~~~~~~~vRL~GIdaPe~~ 246 (570)
T 3bdl_A 174 GLHSKKEVPIH-RVADISGD------TQKAKQFLPFLQRAGRSEAVVEYVFSGSRLKLYLPKETCLITFLLAGIECPRGA 246 (570)
T ss_dssp GGGCCSCCCCC-CCEECTTC------HHHHHHHHHHHHHTCEEEEEEEEESSSSEEEEEETTTTEEEEEEESSEECCCCC
T ss_pred CCCCCCCCCcc-eeeecCCc------hHHHHHHHHHHhhCCeeeEEEEEEeCCCEEEEEEcCCCcEEEEEEEEEECCCCC
Confidence 99998654322 34666543 4688999985 5699999999999999999999988899999999999999986
Q ss_pred CCCCccccCcccccCCCccccccccchhhHHHHhhhcccCCCCCCCchhHHHHHHHHHHHccCceEEEEEeeecCCCCEE
Q 003834 226 RRPAAIVDTDTEETNGDVSAAEAVAPLNSAQRLAASTASAGQQSTDEPFALDAKYFTEMRVLNREVRIVLEGVDKFKNLI 305 (792)
Q Consensus 226 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ep~a~eAk~fl~~~ll~r~V~v~~~~~Dkygr~l 305 (792)
+.. .+ ...+.+|||.||+.|++++|++|+|+|.+.+.|+|||++
T Consensus 247 ~~~-----------~~-------------------------~~~~~~~~g~eA~~~l~~~l~~r~V~~~~~~~D~ygR~l 290 (570)
T 3bdl_A 247 RNL-----------PG-------------------------LVQEGEPFSEEATLFTKELVLQREVEVEVESMDKAGNFI 290 (570)
T ss_dssp EEE-----------TT-------------------------EEECCCTTHHHHHHHHHHHHTTCEEEEEEEEECTTSCEE
T ss_pred CCC-----------CC-------------------------CccccChHHHHHHHHHHHHhcCCeEEEEEEeEcCCCCEE
Confidence 520 00 012478999999999999999999999999999999999
Q ss_pred EEEEecCCCchHHHHHHHHhccceEEEecccccchHHHHHHHHHHHHHHHHhccccccccCCCCCC-------ccccccc
Q 003834 306 GSVFYPDGETAKDLAMELVENGLAKYIEWSANMMEEDAKRRLKAADLQAKKTRLRMWTNYVPPQSN-------SKAIHDQ 378 (792)
Q Consensus 306 g~V~~~~g~~~~Dl~~eLL~~GlA~~~~~~~~~~~~~~~~~l~~AE~~Ak~~k~GIWk~~~~~~~~-------~~~~~~k 378 (792)
|+||++ |. ||+++||++|||+++ ++..... +...|++||++||++++|||+.+.|+... .......
T Consensus 291 a~v~~~-~~---~v~~~Lv~~GlA~~~-~~~~~~~--~~~~~~~aE~~Ak~~~~GlW~~~~~~~~~~~~~~~~~~~~~~~ 363 (570)
T 3bdl_A 291 GWLHID-GA---NLSVLLVEHALSKVH-FTAERSS--YYKSLLSAEEAAKQKKEKVWAHYEEQPVEEVMPVLEEKERSAS 363 (570)
T ss_dssp EEEEET-TE---EHHHHHHHTTSSEEC-GGGTTST--THHHHHHHHHHHHHHTCGGGC----------CCCCCCSSCCCC
T ss_pred EEEEEC-CE---EHHHHHHHcCCcEEE-ecCCCcc--hHHHHHHHHHHHHHhCCCCCcccccccchhcccccccCCCCCc
Confidence 999997 44 499999999999998 3322222 23589999999999999999998876211 0112245
Q ss_pred eeeEEEEEEEeCCEEEEEeCCCCCCCCccceEEEeec-c-cCCCC---CCCCCCCchhhhHHHHHHHHHhhhCC----CE
Q 003834 379 NFTGKVVEVVSGDCIIVADDSIPYGNALAERRVNLSS-I-RCPKI---GNPRKDEKPAAYAREAREFLRTRLIG----RQ 449 (792)
Q Consensus 379 ~~~g~V~~V~sGDti~i~~~~~~~~~~~~e~~v~Las-i-~~P~~---~~~~~~~~~~~~~~eare~lR~~liG----k~ 449 (792)
.+.+.|+.|.+...|+|+..+... ..++..-.|.. . ..|.+ ..|+.|..+.+... ...|+|.+|+. ..
T Consensus 364 ~~~V~Vt~V~sp~~Fyvq~~~~~~--~l~~l~~~l~~~~~~~~~l~~~~~~~~G~~c~a~~~-d~~wyRa~I~~v~~~~~ 440 (570)
T 3bdl_A 364 YKPVFVTEITDDLHFYVQDVETGT--QLEKLMENMRNDIASHPPVEGSYAPRRGEFCIAKFV-DGEWYRARVEKVESPAK 440 (570)
T ss_dssp CEEEEEEEECTTSEEEEEEGGGHH--HHHHHHHHHHHHHHHSCCCTTCCCCCTTCEEEEECT-TSCEEEEEEEEEEETTE
T ss_pred EEEEEEEEEECCCeEEEEECCcHH--HHHHHHHHHHHHHhcCCCCCCCcCCCcCCEEEEEEC-CCCEEEEEEEEEcCCCe
Confidence 578999999999999999854210 00000001110 0 01222 23555666655444 67899999974 45
Q ss_pred EEE-EEeeeeeccccccccccCCCCCCCC--CCCCCccccccccCCCCCCCccc-----ccce--e-eeeeeEEecCCCC
Q 003834 450 VNV-QMEYSRKVVVEAAPVAAGAKGPAGT--KGPAGTKGQAAAKGPAGEESVGA-----TETR--I-IDFGSIFLLSPIK 518 (792)
Q Consensus 450 v~v-~~dy~~~~~~~y~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~-----~~~~--~-~~~~~v~~~~~~~ 518 (792)
+.| .+||++...+...-+++.++.+... +.++..|+|+.++.|... +..+ +... . ...+.|.-..
T Consensus 441 ~~V~fvDyGn~e~v~~~~Lr~l~~~f~~l~lP~qA~~c~La~v~pp~~~-~w~~ea~~~f~~lv~~k~l~~~V~~~~--- 516 (570)
T 3bdl_A 441 IHVFYIDYGNREVLPSTRLGTLSPAFSTRVLPAQATEYAFAFIQVPQDD-DARTDAVDSVVRDIQNTQCLLNVEHLS--- 516 (570)
T ss_dssp EEEEETTTCCEEEECGGGEECCCGGGSTTTSCCCCEEEEETTEECCSSH-HHHHHHHHHHHHHHTTEEEEEEEEECC---
T ss_pred EEEEEEeCCCeEEEEHHHCccCCHHHhcCCCCcceEEEEECCeEcCCCC-CCcHHHHHHHHHHhCCCEEEEEEEEEe---
Confidence 555 5899999988888899999999876 899999999999988732 2111 1110 0 1122222110
Q ss_pred CCCCCchhhhhcccCCCCCCcchHHHHHhcCceEEEecCCccccchhHHHHHHHHHHHHH
Q 003834 519 GEGDDASAVAQSNAAGQPAGVNVAELVVSRGLGNVINHRDFEERSNYYDALLAAEARAKA 578 (792)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~g~ni~~~lv~~Gla~v~~~~~~~~~s~~~~~L~~aE~~A~~ 578 (792)
++.-.+++.. ..++.+||+.||++|||.+.+.+ ...-...+++|+++|..|++
T Consensus 517 ---~~~~~V~L~~---~~~~~sIn~~Lv~~G~A~~~~~~-~~~~~~~~~~l~~~q~~Ak~ 569 (570)
T 3bdl_A 517 ---AGCPHVTLQF---ADSKGDVGLGLVKEGLVMVEVRK-EKQFQKVITEYLNAQESAKS 569 (570)
T ss_dssp ---SSSCEEEEEE---TTTCCBHHHHHHHTTSSEECCCC-SGGGHHHHHHHHHHHHTC--
T ss_pred ---CCcEEEEEEE---CCCCccHHHHHHHCCCeEcchhh-hhhHHHHHHHHHHHHHHHhc
Confidence 0111122211 11368999999999999974322 11225678999999999875
No 2
>3bdl_A Staphylococcal nuclease domain-containing protein 1; staphylococcal nuclease OB fold, tudor domain, cytoplasm, HOST-virus interaction, nucleus; HET: CIT; 1.90A {Homo sapiens}
Probab=100.00 E-value=2.1e-58 Score=537.36 Aligned_cols=347 Identities=39% Similarity=0.607 Sum_probs=287.3
Q ss_pred cceeeEEEEEEEeCCEEEEEeCCCCCCCCccceEEEeecccCCCCCC-CCCC-------CchhhhHHHHHHHHHhhhCCC
Q 003834 377 DQNFTGKVVEVVSGDCIIVADDSIPYGNALAERRVNLSSIRCPKIGN-PRKD-------EKPAAYAREAREFLRTRLIGR 448 (792)
Q Consensus 377 ~k~~~g~V~~V~sGDti~i~~~~~~~~~~~~e~~v~Lasi~~P~~~~-~~~~-------~~~~~~~~eare~lR~~liGk 448 (792)
...+.|+|++|+|||||.|...++ ++++|+|++|+||++.. ++++ ..++|||+||+||||++|+||
T Consensus 22 ~~~~~~~V~~V~DGDTi~v~~~~g------~~~~VRL~gIdaPe~~~~~~~~~~~~~~~~~~~p~g~eA~e~L~~~l~gk 95 (570)
T 3bdl_A 22 DKQFVAKVMQVLNADAIVVKLNSG------DYKTIHLSSIRPPRLEGENTQDKNKKLRPLYDIPYMFEAREFLRKKLIGK 95 (570)
T ss_dssp CSEEEEEEEEEETTTEEEEECTTS------CEEEEEETTEECCCCTTSCCGGGTTTCCHHHHSTTHHHHHHHHHHHHTTC
T ss_pred CcEEEEEEEEEccCCEEEEECCCC------CEEEEEEEEEcCCCcCCCCCccccccccCcccchhHHHHHHHHHHHhCCC
Confidence 468999999999999999985332 38999999999999852 2211 157999999999999999999
Q ss_pred EEEEEEeeeeeccccccccccCCCCCCCCCCCCCccccccccCCCCCCCccccccee-eeeeeEEecCCCCCCCCCchhh
Q 003834 449 QVNVQMEYSRKVVVEAAPVAAGAKGPAGTKGPAGTKGQAAAKGPAGEESVGATETRI-IDFGSIFLLSPIKGEGDDASAV 527 (792)
Q Consensus 449 ~v~v~~dy~~~~~~~y~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~ 527 (792)
+|.|++||.++.... +. ..+. .. |.+|+||+
T Consensus 96 ~V~~~~~~~~~~~~~-----~~-----~~D~------------------------yg~R~la~v~~-------------- 127 (570)
T 3bdl_A 96 KVNVTVDYIRPASPA-----TE-----TVPA------------------------FSERTCATVTI-------------- 127 (570)
T ss_dssp EEEEEEEEEESSCCC-----SS-----CSSS------------------------SCCEEEEEEEE--------------
T ss_pred EEEEEEEeecccccc-----cc-----ccCC------------------------CCceEEEEEcc--------------
Confidence 999999998652100 00 0011 13 88999998
Q ss_pred hhcccCCCCCCcchHHHHHhcCceEEEecC-CccccchhHHHHHHHHHHHHHcCCCCCCCCCCCccceeeccccchhhhh
Q 003834 528 AQSNAAGQPAGVNVAELVVSRGLGNVINHR-DFEERSNYYDALLAAEARAKAGKKGCYSSKEPPVMHIQDLTMAPVKKAR 606 (792)
Q Consensus 528 ~~~~~~~~~~g~ni~~~lv~~Gla~v~~~~-~~~~~s~~~~~L~~aE~~A~~~~~G~~~~~~~~~~~~~d~~~~~~~kak 606 (792)
+|.|||++||++|||+|++|+ .+++++.+|++|++||++|+++++|||+.+++++.+++|++. +..+++
T Consensus 128 ---------~g~~v~~~lv~~G~A~v~~~~~~~~~~~~~~~~l~~aE~~A~~~~~GlW~~~~~~~~~~~d~~~-~~~~~~ 197 (570)
T 3bdl_A 128 ---------GGINIAEALVSKGLATVIRYRQDDDQRSSHYDELLAAEARAIKNGKGLHSKKEVPIHRVADISG-DTQKAK 197 (570)
T ss_dssp ---------TTEEHHHHHHHTTSSEECCCSSTTSCCCTTHHHHHHHHHHHHHTTCGGGCCSCCCCCCCEECTT-CHHHHH
T ss_pred ---------CCccHHHHHHhCcCEEEEeecCCccccChHHHHHHHHHHHHHHhCCCCCCCCCCCcceeeecCC-chHHHH
Confidence 478999999999999999987 445678899999999999999999999998878888999974 789999
Q ss_pred hhchhhhcCCcccEEEEEEecCCEEEEEecCCCceEEEEEeeecCCCC----------CchhHHHHHHHHHHHhcCCeEE
Q 003834 607 DFLPFLQRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGR----------NERYSNEALLLMRQKILQRDVE 676 (792)
Q Consensus 607 ~fl~~l~~~~~~~a~V~~V~DGdT~~V~~~~~~~~i~vrL~GIDaPe~----------~qp~g~eAk~~l~~~ll~r~V~ 676 (792)
+|++++++++.+.|+|++|+|||||+|.+++++..++|||+||||||. .||||.+|++||+++|++|+|+
T Consensus 198 ~~l~~~~~~~~~~~~V~~V~DGDT~~v~~~~~~~~~~vRL~GIdaPe~~~~~~~~~~~~~~~g~eA~~~l~~~l~~r~V~ 277 (570)
T 3bdl_A 198 QFLPFLQRAGRSEAVVEYVFSGSRLKLYLPKETCLITFLLAGIECPRGARNLPGLVQEGEPFSEEATLFTKELVLQREVE 277 (570)
T ss_dssp HHHHHHHHTCEEEEEEEEESSSSEEEEEETTTTEEEEEEESSEECCCCCEEETTEEECCCTTHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHhhCCeeeEEEEEEeCCCEEEEEEcCCCcEEEEEEEEEECCCCCCCCCCCccccChHHHHHHHHHHHHhcCCeEE
Confidence 999999999999999999999999999988889999999999999983 6899999999999999999999
Q ss_pred EEEeeecCCCcEEEEEEeCCcchHHHHHHhCCeEEeeccCCCCCCcHHHHHHHHHHHHHccCCCCcCCCCCccccCc--c
Q 003834 677 IEVETVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLEQAEKSAKSQKLKIWENYVEGEEVSNG--A 754 (792)
Q Consensus 677 v~~~~~DkyGR~lg~v~~~~~di~~~Lv~~GlA~v~~~y~~~~~~~~~~l~~aE~~Ak~~k~GlW~~~~p~~~~~~~--~ 754 (792)
|.+.+.|+|||++|+||++|.|||++||++||||+| |...+..+...|.+||++||++|+|||+.+.|.+.+... .
T Consensus 278 ~~~~~~D~ygR~la~v~~~~~~v~~~Lv~~GlA~~~--~~~~~~~~~~~~~~aE~~Ak~~~~GlW~~~~~~~~~~~~~~~ 355 (570)
T 3bdl_A 278 VEVESMDKAGNFIGWLHIDGANLSVLLVEHALSKVH--FTAERSSYYKSLLSAEEAAKQKKEKVWAHYEEQPVEEVMPVL 355 (570)
T ss_dssp EEEEEECTTSCEEEEEEETTEEHHHHHHHTTSSEEC--GGGTTSTTHHHHHHHHHHHHHHTCGGGC----------CCCC
T ss_pred EEEEeEcCCCCEEEEEEECCEEHHHHHHHcCCcEEE--ecCCCcchHHHHHHHHHHHHHhCCCCCcccccccchhccccc
Confidence 999999999999999999999999999999999997 554566777889999999999999999999887432211 1
Q ss_pred ccccccceeEEEEE-Ee---eEEEEEecC-ccchhhhhhc
Q 003834 755 AVEGKQKEVLKKFW-EV---ENFMFSKLV-IRKLPQFSNN 789 (792)
Q Consensus 755 ~~~~~~~~~~~~~~-~~---~~~~~~~~~-~~~~~~~~~~ 789 (792)
.......++.+|.| +| ++||||..+ ...|.+|.++
T Consensus 356 ~~~~~~~~~~~V~Vt~V~sp~~Fyvq~~~~~~~l~~l~~~ 395 (570)
T 3bdl_A 356 EEKERSASYKPVFVTEITDDLHFYVQDVETGTQLEKLMEN 395 (570)
T ss_dssp CCSSCCCCCEEEEEEEECTTSEEEEEEGGGHHHHHHHHHH
T ss_pred ccCCCCCcEEEEEEEEEECCCeEEEEECCcHHHHHHHHHH
Confidence 11234468889999 99 899999998 3446666544
No 3
>4eqp_A Thermonuclease; staphylococcal nuclease, hyperstable, PDTP, ionizable group, hydrolase; HET: THP; 1.35A {Staphylococcus aureus} PDB: 3ero_A* 2rbm_A* 3d8g_A* 3bdc_A* 4f8m_A* 3lx0_A* 3nqt_A* 3nk9_A* 3pmf_A* 3sr1_A* 3t13_A* 3mxp_A* 3r3o_A* 4df7_A* 3np8_A* 3nxw_A* 3oso_A* 3mz5_A* 3mhb_A* 3dhq_A* ...
Probab=99.96 E-value=1.1e-28 Score=238.01 Aligned_cols=129 Identities=26% Similarity=0.403 Sum_probs=111.6
Q ss_pred CcccEEEEEEecCCEEEEEecCCCceEEEEEeeecCCCCCchhHHHHHHHHHHHhc-CCeEEEEE---eeecCCCcEEEE
Q 003834 616 RRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKIL-QRDVEIEV---ETVDRTGTFLGS 691 (792)
Q Consensus 616 ~~~~a~V~~V~DGdT~~V~~~~~~~~i~vrL~GIDaPe~~qp~g~eAk~~l~~~ll-~r~V~v~~---~~~DkyGR~lg~ 691 (792)
...+|+|++|+|||||+|.. .+..++|||+||||||..||||.+|++||+++|. +++|+|++ .+.|+|||++|+
T Consensus 8 ~~~~~~V~~V~DGDTi~v~~--~g~~~~VRL~gIDaPE~~q~~g~~A~~~l~~ll~~g~~V~~~~d~~~~~D~ygR~la~ 85 (143)
T 4eqp_A 8 HKEPATLIKAIDGDTVKLMY--KGQPMTFRLLLVDTPEFNEKYGPEASAFTKKMVENAKKDEVEFDKGQRTDKYGRGLAY 85 (143)
T ss_dssp CEEEEEEEEECSSSEEEEEE--TTEEEEEEETTEECCCTTSTTHHHHHHHHHHHHHHCSCEEEECCSSCSBCTTSCEEEE
T ss_pred ceeeEEEEEEECCCEEEEEe--CCcEEEEEEEeecCCCcCCchHHHHHHHHHHHHhcCCeEEEEEccccccCCCCCEEEE
Confidence 45579999999999999975 3667999999999999999999999999999998 69999998 478999999999
Q ss_pred EEeCCcchHHHHHHhCCeEEeeccCCCCCCcHHHHHHHHHHHHHccCCCCcCCCCC
Q 003834 692 LWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLEQAEKSAKSQKLKIWENYVEG 747 (792)
Q Consensus 692 v~~~~~di~~~Lv~~GlA~v~~~y~~~~~~~~~~l~~aE~~Ak~~k~GlW~~~~p~ 747 (792)
||++|.|||++||++||||++..|.. +..+...|.+||++||++|+|||+..+|+
T Consensus 86 v~~~g~~vn~~lv~~GlA~v~~~~~~-~~~~~~~~~~aE~~Ar~~k~GlW~~~~p~ 140 (143)
T 4eqp_A 86 IYADGKMVNEALVRQGLAKVAYVYKG-NNTHEQLLRKAEAQAKKEKLNIWSEDNAD 140 (143)
T ss_dssp EEETTEEHHHHHHHTTSSEECCCCTT-SCTTHHHHHHHHHHHHHTTCGGGC-----
T ss_pred EEECCchHHHHHHHCCCeEEEeecCC-CcchHHHHHHHHHHHHHhCCCCCCCCCCC
Confidence 99999999999999999999644543 34566789999999999999999998875
No 4
>4eqp_A Thermonuclease; staphylococcal nuclease, hyperstable, PDTP, ionizable group, hydrolase; HET: THP; 1.35A {Staphylococcus aureus} PDB: 3ero_A* 2rbm_A* 3d8g_A* 3bdc_A* 4f8m_A* 3lx0_A* 3nqt_A* 3nk9_A* 3pmf_A* 3sr1_A* 3t13_A* 3mxp_A* 3r3o_A* 4df7_A* 3np8_A* 3nxw_A* 3oso_A* 3mz5_A* 3mhb_A* 3dhq_A* ...
Probab=99.94 E-value=2.9e-27 Score=228.14 Aligned_cols=132 Identities=23% Similarity=0.239 Sum_probs=112.0
Q ss_pred CCCceEEEEEeEecCCCEEEEeeCCCCCCCCCceeEEEEEeccCCCCCCCCCCCChhHHHHHHHHHhhcC-CCeEEEEEc
Q 003834 7 AGGGWYRARVKAVPSGDSLVITALSNPNPGPPREKTLTLSSIITPRLARRGGLDEPFAWDSREFLRKLCI-GKEVTFRVD 85 (792)
Q Consensus 7 ~~~~~~~g~V~~V~dGDTi~v~~~~~~~~g~~~~~~VrLagIdAPe~~~~~~~~eP~g~eArE~Lr~lli-GK~V~v~~~ 85 (792)
..-..+.|+|++|+|||||.|..+ | ...+|||+||||||+ .||||.+|++||++++. |+.|.|.++
T Consensus 5 ~~~~~~~~~V~~V~DGDTi~v~~~-----g--~~~~VRL~gIDaPE~------~q~~g~~A~~~l~~ll~~g~~V~~~~d 71 (143)
T 4eqp_A 5 KKLHKEPATLIKAIDGDTVKLMYK-----G--QPMTFRLLLVDTPEF------NEKYGPEASAFTKKMVENAKKDEVEFD 71 (143)
T ss_dssp --CCEEEEEEEEECSSSEEEEEET-----T--EEEEEEETTEECCCT------TSTTHHHHHHHHHHHHHHCSCEEEECC
T ss_pred CCCceeeEEEEEEECCCEEEEEeC-----C--cEEEEEEEeecCCCc------CCchHHHHHHHHHHHHhcCCeEEEEEc
Confidence 344677899999999999999975 2 468999999999998 58999999999999998 899999986
Q ss_pred --eecCCCCcEEEEEEeCCccHHHHHHhcCCEEEEEccCcCCCCchhHHHHHHHHHHHHHhCCCCcCCCCC
Q 003834 86 --YAVPNIGREFGTVILGDKNVAMLVVSEGWAKVKEQGSQKGEASPFLAELLRLEEQAKLQGLGRWSKVPG 154 (792)
Q Consensus 86 --~~~d~~gR~~g~V~l~g~nIn~~LV~~G~A~v~~~~~~~~~~~~~~~~l~~aE~~Ak~~k~GiWs~~~~ 154 (792)
...|+|||.+|+||++|.+||++||++|||+++..+. .+..+.+.|.+||++||++++|||+...|
T Consensus 72 ~~~~~D~ygR~la~v~~~g~~vn~~lv~~GlA~v~~~~~---~~~~~~~~~~~aE~~Ar~~k~GlW~~~~p 139 (143)
T 4eqp_A 72 KGQRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAYVYK---GNNTHEQLLRKAEAQAKKEKLNIWSEDNA 139 (143)
T ss_dssp SSCSBCTTSCEEEEEEETTEEHHHHHHHTTSSEECCCCT---TSCTTHHHHHHHHHHHHHTTCGGGC----
T ss_pred cccccCCCCCEEEEEEECCchHHHHHHHCCCeEEEeecC---CCcchHHHHHHHHHHHHHhCCCCCCCCCC
Confidence 3578999999999999999999999999999975442 23456788999999999999999998754
No 5
>2wac_A CG7008-PA; unknown function, tudor, beta-barrel, nuclease domain, tudor P100, SND1, methylated arginine, SDMA, splicing; 2.10A {Drosophila melanogaster}
Probab=99.63 E-value=1.7e-15 Score=154.70 Aligned_cols=125 Identities=22% Similarity=0.259 Sum_probs=101.5
Q ss_pred cccEEEEEEecCCEEEEEecCCC----------------------ceEEEEEeeecCCCCCchhHHHHHHHHHHHhcCCe
Q 003834 617 RIPAVVEYVLSGHRFKVLIPKET----------------------CSIAFSFSGVRCPGRNERYSNEALLLMRQKILQRD 674 (792)
Q Consensus 617 ~~~a~V~~V~DGdT~~V~~~~~~----------------------~~i~vrL~GIDaPe~~qp~g~eAk~~l~~~ll~r~ 674 (792)
-+.|+|+.|.+ +++.|+.-..| ..+++||+||++|+ .++|+.+|.+++++++.++.
T Consensus 68 wyRa~V~~v~~-~~~~V~~vDyG~~~~v~~~~l~~l~~~~~~~p~~a~~~~Lagv~~p~-~~~w~~eA~~~l~~lv~~k~ 145 (218)
T 2wac_A 68 WYRAKVERVQG-SNATVLYIDYGNKETLPTNRLAALPPAFSSEKPYATEYALALVALPT-DNEDKEEALRAFSEDVLNHK 145 (218)
T ss_dssp EEEEEEEEEET-TEEEEEETTTCCEEEEEGGGEEECCGGGSSSCCSEEEEEETTEECCS-SHHHHHHHHHHHHHHHBTCE
T ss_pred EEEEEEEEecC-CeEEEEEEecCCeEEEchHHcccCChhhccCCcceeEEEECCEECCC-CcchHHHHHHHHHHHhcCCE
Confidence 34688888876 77777643322 34578999999999 89999999999999999999
Q ss_pred EEEEEeeecCCCc-EEEEEEe--CCcchHHHHHHhCCeEEeeccCCCCCCcHHHHHHHHHHHHHccCCCCcCC
Q 003834 675 VEIEVETVDRTGT-FLGSLWE--SRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLEQAEKSAKSQKLKIWENY 744 (792)
Q Consensus 675 V~v~~~~~DkyGR-~lg~v~~--~~~di~~~Lv~~GlA~v~~~y~~~~~~~~~~l~~aE~~Ak~~k~GlW~~~ 744 (792)
|.+.+...| +|| .++.|+. ++.+||.+||++||||+++............|.+||++||++|+|||+..
T Consensus 146 v~~~v~~~d-~g~~~~V~L~~~~~~~~in~~Lv~~G~A~~~~~~~~~~~~~~~~~~~~e~~Ar~~r~GlW~~g 217 (218)
T 2wac_A 146 VQLNVELKV-TGSPNLATLRDPTTKVDFGKQLVAEGLVLAEQRGERKLKELVDQYKAAQEAARVAHLAIWKYG 217 (218)
T ss_dssp EEEEEEECC-TTSCEEEEEECTTTCCBHHHHHHHTTSSEECCCCCGGGHHHHHHHHHHHHHHHHTTCGGGTTC
T ss_pred EEEEEEEEc-CCceEEEEEEeCCCCccHHHHHHHCCCcccccccchhHHHHHHHHHHHHHHHHHhcCCCcccC
Confidence 999999999 999 9999997 47899999999999999732211011233679999999999999999853
No 6
>2wac_A CG7008-PA; unknown function, tudor, beta-barrel, nuclease domain, tudor P100, SND1, methylated arginine, SDMA, splicing; 2.10A {Drosophila melanogaster}
Probab=99.53 E-value=6.2e-14 Score=143.14 Aligned_cols=132 Identities=17% Similarity=0.309 Sum_probs=106.0
Q ss_pred CCceEEEEEeEecCCCEEEEeeCCCCC-----------------CCCCceeEEEEEeccCCCCCCCCCCCChhHHHHHHH
Q 003834 8 GGGWYRARVKAVPSGDSLVITALSNPN-----------------PGPPREKTLTLSSIITPRLARRGGLDEPFAWDSREF 70 (792)
Q Consensus 8 ~~~~~~g~V~~V~dGDTi~v~~~~~~~-----------------~g~~~~~~VrLagIdAPe~~~~~~~~eP~g~eArE~ 70 (792)
...|+.|+|++|.+ |++.|...+-+. .-|+...++||++|++|+ +++|+.+|+++
T Consensus 65 d~~wyRa~V~~v~~-~~~~V~~vDyG~~~~v~~~~l~~l~~~~~~~p~~a~~~~Lagv~~p~-------~~~w~~eA~~~ 136 (218)
T 2wac_A 65 DNQWYRAKVERVQG-SNATVLYIDYGNKETLPTNRLAALPPAFSSEKPYATEYALALVALPT-------DNEDKEEALRA 136 (218)
T ss_dssp TCCEEEEEEEEEET-TEEEEEETTTCCEEEEEGGGEEECCGGGSSSCCSEEEEEETTEECCS-------SHHHHHHHHHH
T ss_pred CCeEEEEEEEEecC-CeEEEEEEecCCeEEEchHHcccCChhhccCCcceeEEEECCEECCC-------CcchHHHHHHH
Confidence 57899999999977 888887532000 013456688999999998 47999999999
Q ss_pred HHhhcCCCeEEEEEceecCCCCc-EEEEEEe--CCccHHHHHHhcCCEEEEEccCcCCCCchhHHHHHHHHHHHHHhCCC
Q 003834 71 LRKLCIGKEVTFRVDYAVPNIGR-EFGTVIL--GDKNVAMLVVSEGWAKVKEQGSQKGEASPFLAELLRLEEQAKLQGLG 147 (792)
Q Consensus 71 Lr~lliGK~V~v~~~~~~d~~gR-~~g~V~l--~g~nIn~~LV~~G~A~v~~~~~~~~~~~~~~~~l~~aE~~Ak~~k~G 147 (792)
|++++.|+.|.+.+.+ .+ +|| .+++++. ++.+||++||++|||+++.... .....+..+|.+||++||++++|
T Consensus 137 l~~lv~~k~v~~~v~~-~d-~g~~~~V~L~~~~~~~~in~~Lv~~G~A~~~~~~~--~~~~~~~~~~~~~e~~Ar~~r~G 212 (218)
T 2wac_A 137 FSEDVLNHKVQLNVEL-KV-TGSPNLATLRDPTTKVDFGKQLVAEGLVLAEQRGE--RKLKELVDQYKAAQEAARVAHLA 212 (218)
T ss_dssp HHHHHBTCEEEEEEEE-CC-TTSCEEEEEECTTTCCBHHHHHHHTTSSEECCCCC--GGGHHHHHHHHHHHHHHHHTTCG
T ss_pred HHHHhcCCEEEEEEEE-Ec-CCceEEEEEEeCCCCccHHHHHHHCCCcccccccc--hhHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999885 45 799 9999997 5889999999999999973321 01134567899999999999999
Q ss_pred CcCC
Q 003834 148 RWSK 151 (792)
Q Consensus 148 iWs~ 151 (792)
||+-
T Consensus 213 lW~~ 216 (218)
T 2wac_A 213 IWKY 216 (218)
T ss_dssp GGTT
T ss_pred Cccc
Confidence 9975
No 7
>2hqx_A P100 CO-activator tudor domain; human P100 tudor domain, proteolytic fragment, PSI, structural genomics; 1.42A {Homo sapiens} SCOP: b.34.9.1 PDB: 2hqe_A 3omc_A* 3omg_A* 2o4x_A 2e6n_A 2o4x_B
Probab=99.41 E-value=6.9e-14 Score=145.98 Aligned_cols=132 Identities=20% Similarity=0.184 Sum_probs=16.1
Q ss_pred cccEEEEEEecCCEEEEEecCC------------------------CceEEEEEeeecCCCCCchhHHHHHHHHHHHhcC
Q 003834 617 RIPAVVEYVLSGHRFKVLIPKE------------------------TCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQ 672 (792)
Q Consensus 617 ~~~a~V~~V~DGdT~~V~~~~~------------------------~~~i~vrL~GIDaPe~~qp~g~eAk~~l~~~ll~ 672 (792)
-+.|+|+.|.+++++.|+.-.. ...+.+||+||++|+. +.|+.+|..++.+++++
T Consensus 81 wyRa~V~~~~~~~~~~V~~vDyGn~~~v~~~~lr~l~~~~~~~~lp~~a~~~~L~~v~~p~~-~~~~~eA~~~l~~lv~~ 159 (246)
T 2hqx_A 81 WYRARVEKVESPAKIHVFYIDYGNREVLPSTRLGTLSPAFSTRVLPAQATEYAFAFIQVPQD-DDARTDAVDSVVRDIQN 159 (246)
T ss_dssp EEEEEEEEEEETTEEEEEETTTCCEEEECGGGEECCCGGGSTTTSCCCC-------------------------------
T ss_pred EEEEEEEEEcCCCeEEEEEEeCCCeEEEeHHHhhcCCHhHcCCCCchhhhhhhhhceecCCC-ccchHHHHHHHHHHhcC
Confidence 3468888888778888864321 2345789999999985 57999999999999999
Q ss_pred CeEEEEEeeecCCCcEEEEEEe--CCcchHHHHHHhCCeEEeeccCCCCCCcHHHHHHHHHHHHHccCCCCcCCCCCccc
Q 003834 673 RDVEIEVETVDRTGTFLGSLWE--SRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLEQAEKSAKSQKLKIWENYVEGEEV 750 (792)
Q Consensus 673 r~V~v~~~~~DkyGR~lg~v~~--~~~di~~~Lv~~GlA~v~~~y~~~~~~~~~~l~~aE~~Ak~~k~GlW~~~~p~~~~ 750 (792)
+.|.+.+...|. |+.++.|+. ++.+||.+||++||||+++.|..........|.+||++||++|+|||+..++...+
T Consensus 160 k~v~~~v~~~d~-g~~~v~L~~~~~~~~In~~LV~~GlA~~~~~~~~~~~~~~~~~~~~e~~Ar~~r~GlW~~gd~~~dd 238 (246)
T 2hqx_A 160 TQCLLNVEHLSA-GCPHVTLQFADSKGDVGLGLVKEGLVMVEVRKEKQFQKVITEYLNAQESAKSARLNLWRYGDFRADD 238 (246)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEEEEEEEecC-CeEEEEEEeCCCCccHHHHHHHCCCEEecccchhhHHHHHHHHHHHHHHHHHhccCcccCCCCCccc
Confidence 999999988885 888889987 46899999999999999865532223344679999999999999999887776543
No 8
>2hqx_A P100 CO-activator tudor domain; human P100 tudor domain, proteolytic fragment, PSI, structural genomics; 1.42A {Homo sapiens} SCOP: b.34.9.1 PDB: 2hqe_A 3omc_A* 3omg_A* 2o4x_A 2e6n_A 2o4x_B
Probab=99.25 E-value=2.2e-12 Score=134.54 Aligned_cols=135 Identities=21% Similarity=0.298 Sum_probs=22.2
Q ss_pred CCceEEEEEeEecCCCEEEEeeCCCCC-------------------CCCCceeEEEEEeccCCCCCCCCCCCChhHHHHH
Q 003834 8 GGGWYRARVKAVPSGDSLVITALSNPN-------------------PGPPREKTLTLSSIITPRLARRGGLDEPFAWDSR 68 (792)
Q Consensus 8 ~~~~~~g~V~~V~dGDTi~v~~~~~~~-------------------~g~~~~~~VrLagIdAPe~~~~~~~~eP~g~eAr 68 (792)
...|+.|+|++|.+++++.|..-+-+. .-|+....+||++|++|+. ..|+.+|.
T Consensus 78 d~~wyRa~V~~~~~~~~~~V~~vDyGn~~~v~~~~lr~l~~~~~~~~lp~~a~~~~L~~v~~p~~-------~~~~~eA~ 150 (246)
T 2hqx_A 78 DGEWYRARVEKVESPAKIHVFYIDYGNREVLPSTRLGTLSPAFSTRVLPAQATEYAFAFIQVPQD-------DDARTDAV 150 (246)
T ss_dssp TSCEEEEEEEEEEETTEEEEEETTTCCEEEECGGGEECCCGGGSTTTSCCCC----------------------------
T ss_pred CCCEEEEEEEEEcCCCeEEEEEEeCCCeEEEeHHHhhcCCHhHcCCCCchhhhhhhhhceecCCC-------ccchHHHH
Confidence 568999999999988898887432000 0144566788899988873 45999999
Q ss_pred HHHHhhcCCCeEEEEEceecCCCCcEEEEEEe--CCccHHHHHHhcCCEEEEEccCcCCCCchhHHHHHHHHHHHHHhCC
Q 003834 69 EFLRKLCIGKEVTFRVDYAVPNIGREFGTVIL--GDKNVAMLVVSEGWAKVKEQGSQKGEASPFLAELLRLEEQAKLQGL 146 (792)
Q Consensus 69 E~Lr~lliGK~V~v~~~~~~d~~gR~~g~V~l--~g~nIn~~LV~~G~A~v~~~~~~~~~~~~~~~~l~~aE~~Ak~~k~ 146 (792)
++|.+++.|+.|.+.++. .+ .||.+++|+. ++.+||.+||++|||+++..+.. ....+..+|.+||++||++++
T Consensus 151 ~~l~~lv~~k~v~~~v~~-~d-~g~~~v~L~~~~~~~~In~~LV~~GlA~~~~~~~~--~~~~~~~~~~~~e~~Ar~~r~ 226 (246)
T 2hqx_A 151 DSVVRDIQNTQCLLNVEH-LS-AGCPHVTLQFADSKGDVGLGLVKEGLVMVEVRKEK--QFQKVITEYLNAQESAKSARL 226 (246)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHhcCCEEEEEEEE-ec-CCeEEEEEEeCCCCccHHHHHHHCCCEEecccchh--hHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999998874 34 3888888888 57899999999999999875421 112345789999999999999
Q ss_pred CCcCCCC
Q 003834 147 GRWSKVP 153 (792)
Q Consensus 147 GiWs~~~ 153 (792)
|||+...
T Consensus 227 GlW~~gd 233 (246)
T 2hqx_A 227 NLWRYGD 233 (246)
T ss_dssp -------
T ss_pred CcccCCC
Confidence 9997643
No 9
>4b9w_A TDRD1, tudor domain-containing protein 1; replication; HET: 2MR; 2.10A {Mus musculus}
Probab=96.20 E-value=0.029 Score=56.30 Aligned_cols=100 Identities=17% Similarity=0.191 Sum_probs=69.4
Q ss_pred CCCceEEEEEeEecCCCEEEEeeCCCCC-----------------CCCCceeEEEEEeccCCCCCCCCCCCChhHHHHHH
Q 003834 7 AGGGWYRARVKAVPSGDSLVITALSNPN-----------------PGPPREKTLTLSSIITPRLARRGGLDEPFAWDSRE 69 (792)
Q Consensus 7 ~~~~~~~g~V~~V~dGDTi~v~~~~~~~-----------------~g~~~~~~VrLagIdAPe~~~~~~~~eP~g~eArE 69 (792)
....|++|+|.++.+.+++.|..-+-|. .=|+.-.+.+|++|..| +..|..+|.+
T Consensus 78 ~d~~wyRa~V~~~~~~~~~~V~~vDyG~~~~v~~~~l~~l~~~f~~lP~qA~~c~L~~v~p~--------~~~w~~ea~~ 149 (201)
T 4b9w_A 78 GDGNWYRALVKEILPSGNVKVHFVDYGNVEEVTTDQLQAILPQFLLLPFQGMQCWLVDIQPP--------NKHWTKEATA 149 (201)
T ss_dssp TTTEEEEEEEEEECTTSCEEEEETTTCCEEEECGGGEEECCGGGGSSCBCCEEEEESSEECS--------SSSCCHHHHH
T ss_pred CCCeEEEEEEEEECCCCeEEEEEEccCCEEEEEHHHhccChHhHcccchhhEEEEEcCEEcC--------CCCCCHHHHH
Confidence 4567999999999988888777543100 00223456677777633 3458899999
Q ss_pred HHHhhcCCCeEEEEEceecCCCCcEEEEEEe----CCccHHHHHHhcCCEE
Q 003834 70 FLRKLCIGKEVTFRVDYAVPNIGREFGTVIL----GDKNVAMLVVSEGWAK 116 (792)
Q Consensus 70 ~Lr~lliGK~V~v~~~~~~d~~gR~~g~V~l----~g~nIn~~LV~~G~A~ 116 (792)
++++++.||.+.+++....+ +...-.++- .+.+|+..||++|||.
T Consensus 150 ~f~~l~~~k~l~~~V~~~~~--~~~~V~L~d~~~~~~~~I~~~Lv~~gLA~ 198 (201)
T 4b9w_A 150 RFQACVVGLKLQARVVEITA--NGVGVELTDLSTPYPKIISDVLIREQLVL 198 (201)
T ss_dssp HHHHHHTTCCEEEEEEEEET--TEEEEEEEECSSSSCEEHHHHHHHTTSSE
T ss_pred HHHHHHCCCEEEEEEEEEeC--CEEEEEEEECCCCCccchHHHHHHCcCee
Confidence 99999999999998774332 233333442 2468999999999995
No 10
>4b9x_A TDRD1, tudor domain-containing protein 1; replication; 2.80A {Mus musculus}
Probab=96.16 E-value=0.021 Score=58.38 Aligned_cols=119 Identities=12% Similarity=0.026 Sum_probs=75.3
Q ss_pred CCcccEEEEEeccCCEEEEEEcCCceEEEEEEeeeeCCC--CCCCCCccccCcccccCCCccccccccchhhHHHHhhhc
Q 003834 185 GRPMQGIVEQARDGSTLRVYLLPEFQFVQVFVAGIQAPA--VARRPAAIVDTDTEETNGDVSAAEAVAPLNSAQRLAAST 262 (792)
Q Consensus 185 ~~~~~~vVe~V~dGdt~rv~~~~~~~~i~v~l~GI~~Pe--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 262 (792)
|.-..|.|..+.+.+.+.|++.+-|....|.+.-+.... +..-++. |- .--|...
T Consensus 80 ~~WyRa~V~~~~~~~~~~V~~vDyGn~~~v~~~~l~~l~~~f~~lP~q--------------A~--~c~L~~v------- 136 (226)
T 4b9x_A 80 GNWYRALVKEILPSGNVKVHFVDYGNVEEVTTDQLQAILPQFLLLPFQ--------------GM--QCWLVDI------- 136 (226)
T ss_dssp TEEEEEEEEEECSSSEEEEECTTTCCEEEEEGGGEECCCGGGSSSCBC--------------CE--EEEESSE-------
T ss_pred CeEEEEEEEEECCCCeEEEEEEecCCEEEEEHHHhccChHHHcccccc--------------eE--EEEEecE-------
Confidence 567789999998888999998875554444444444211 1110000 00 0000000
Q ss_pred ccCCCCCCCchhHHHHHHHHHHHccCceEEEEEeeecCCCCEEEEEEecCCCchHHHHHHHHhccceEEE
Q 003834 263 ASAGQQSTDEPFALDAKYFTEMRVLNREVRIVLEGVDKFKNLIGSVFYPDGETAKDLAMELVENGLAKYI 332 (792)
Q Consensus 263 ~~~~~~~~~ep~a~eAk~fl~~~ll~r~V~v~~~~~Dkygr~lg~V~~~~g~~~~Dl~~eLL~~GlA~~~ 332 (792)
.+....|..+|..++++++.++.+.+.+...+..+ +.-.++-..+..+.+|+..|+++|||...
T Consensus 137 -----~p~~~~w~~ea~~~f~~l~~~k~l~~~V~~~~~~~-~~V~L~d~~~~~~~~I~~~Lv~~gla~~~ 200 (226)
T 4b9x_A 137 -----QPPNKHWTKEATARFQACVVGLKLQARVVEITANG-VGVELTDLSTPYPKIISDVLIREQLVLRC 200 (226)
T ss_dssp -----ECSSSSCCHHHHHHHHHHHTTCCEEEEEEEECSSC-EEEEEEECSSSSCEEHHHHHHHTTSSEEC
T ss_pred -----ECCCCCCCHHHHHHHHHHHCCCeEEEEEEEEeCCe-EEEEEEECCCCCCccHHHHHHHCCCcccc
Confidence 01234588999999999999999999998877554 44556655544456799999999999754
No 11
>4b9x_A TDRD1, tudor domain-containing protein 1; replication; 2.80A {Mus musculus}
Probab=95.92 E-value=0.054 Score=55.31 Aligned_cols=91 Identities=15% Similarity=0.176 Sum_probs=68.6
Q ss_pred ccEEEEEEecCCEEEEEecCC----------------------CceEEEEEeeecCCCCCchhHHHHHHHHHHHhcCCeE
Q 003834 618 IPAVVEYVLSGHRFKVLIPKE----------------------TCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQRDV 675 (792)
Q Consensus 618 ~~a~V~~V~DGdT~~V~~~~~----------------------~~~i~vrL~GIDaPe~~qp~g~eAk~~l~~~ll~r~V 675 (792)
+.|+|..+.+.+++.|+.-.. ..-++++|+||..+ +..|..+|..++++++.++.+
T Consensus 83 yRa~V~~~~~~~~~~V~~vDyGn~~~v~~~~l~~l~~~f~~lP~qA~~c~L~~v~p~--~~~w~~ea~~~f~~l~~~k~l 160 (226)
T 4b9x_A 83 YRALVKEILPSGNVKVHFVDYGNVEEVTTDQLQAILPQFLLLPFQGMQCWLVDIQPP--NKHWTKEATARFQACVVGLKL 160 (226)
T ss_dssp EEEEEEEECSSSEEEEECTTTCCEEEEEGGGEECCCGGGSSSCBCCEEEEESSEECS--SSSCCHHHHHHHHHHHTTCCE
T ss_pred EEEEEEEECCCCeEEEEEEecCCEEEEEHHHhccChHHHcccccceEEEEEecEECC--CCCCCHHHHHHHHHHHCCCeE
Confidence 467888887777777764322 24568899999743 356999999999999999999
Q ss_pred EEEEeeecCCCcEEEEEEeC----CcchHHHHHHhCCeEE
Q 003834 676 EIEVETVDRTGTFLGSLWES----RTNVAVILLEAGLAKL 711 (792)
Q Consensus 676 ~v~~~~~DkyGR~lg~v~~~----~~di~~~Lv~~GlA~v 711 (792)
.+.+.+.+..+ +.-.++-. +.+|+..||++|||..
T Consensus 161 ~~~V~~~~~~~-~~V~L~d~~~~~~~~I~~~Lv~~gla~~ 199 (226)
T 4b9x_A 161 QARVVEITANG-VGVELTDLSTPYPKIISDVLIREQLVLR 199 (226)
T ss_dssp EEEEEEECSSC-EEEEEEECSSSSCEEHHHHHHHTTSSEE
T ss_pred EEEEEEEeCCe-EEEEEEECCCCCCccHHHHHHHCCCccc
Confidence 99998886544 44445432 4679999999999975
No 12
>4b9w_A TDRD1, tudor domain-containing protein 1; replication; HET: 2MR; 2.10A {Mus musculus}
Probab=95.87 E-value=0.027 Score=56.52 Aligned_cols=117 Identities=13% Similarity=0.066 Sum_probs=71.3
Q ss_pred CCcccEEEEEeccCCEEEEEEcCCceEEEEEEeeeeC--CCCCCCCCccccCcccccCCCccccccccchhhHHHHhhhc
Q 003834 185 GRPMQGIVEQARDGSTLRVYLLPEFQFVQVFVAGIQA--PAVARRPAAIVDTDTEETNGDVSAAEAVAPLNSAQRLAAST 262 (792)
Q Consensus 185 ~~~~~~vVe~V~dGdt~rv~~~~~~~~i~v~l~GI~~--Pe~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 262 (792)
|.-..|.|..+.+.+++.|++.+-+....|.+.-+.. |++..-++. |- .--|...
T Consensus 80 ~~wyRa~V~~~~~~~~~~V~~vDyG~~~~v~~~~l~~l~~~f~~lP~q--------------A~--~c~L~~v------- 136 (201)
T 4b9w_A 80 GNWYRALVKEILPSGNVKVHFVDYGNVEEVTTDQLQAILPQFLLLPFQ--------------GM--QCWLVDI------- 136 (201)
T ss_dssp TEEEEEEEEEECTTSCEEEEETTTCCEEEECGGGEEECCGGGGSSCBC--------------CE--EEEESSE-------
T ss_pred CeEEEEEEEEECCCCeEEEEEEccCCEEEEEHHHhccChHhHcccchh--------------hE--EEEEcCE-------
Confidence 5667899999988888999888755444443333331 111100000 00 0000000
Q ss_pred ccCCCCCCCchhHHHHHHHHHHHccCceEEEEEeeecCCCCEEEEEEecCCCchHHHHHHHHhccceE
Q 003834 263 ASAGQQSTDEPFALDAKYFTEMRVLNREVRIVLEGVDKFKNLIGSVFYPDGETAKDLAMELVENGLAK 330 (792)
Q Consensus 263 ~~~~~~~~~ep~a~eAk~fl~~~ll~r~V~v~~~~~Dkygr~lg~V~~~~g~~~~Dl~~eLL~~GlA~ 330 (792)
.+....|..+|..++++++.++.+.+.+...+..+ +.-.++...+..+.+|+..|+++|||.
T Consensus 137 -----~p~~~~w~~ea~~~f~~l~~~k~l~~~V~~~~~~~-~~V~L~d~~~~~~~~I~~~Lv~~gLA~ 198 (201)
T 4b9w_A 137 -----QPPNKHWTKEATARFQACVVGLKLQARVVEITANG-VGVELTDLSTPYPKIISDVLIREQLVL 198 (201)
T ss_dssp -----ECSSSSCCHHHHHHHHHHHTTCCEEEEEEEEETTE-EEEEEEECSSSSCEEHHHHHHHTTSSE
T ss_pred -----EcCCCCCCHHHHHHHHHHHCCCEEEEEEEEEeCCE-EEEEEEECCCCCccchHHHHHHCcCee
Confidence 01123588999999999999999999888776543 444555444444567999999999995
No 13
>3ntk_A Maternal protein tudor; tudor domain, OB-fold, GERM cell formation, transcription; 1.80A {Drosophila melanogaster} PDB: 3nth_A* 3nti_A*
Probab=92.89 E-value=0.34 Score=47.15 Aligned_cols=89 Identities=8% Similarity=0.047 Sum_probs=66.5
Q ss_pred CCCceEEEEEeEecCCCEEEEeeCCCCCCC-----------------CCceeEEEEEeccCCCCCCCCCCCChhHHHHHH
Q 003834 7 AGGGWYRARVKAVPSGDSLVITALSNPNPG-----------------PPREKTLTLSSIITPRLARRGGLDEPFAWDSRE 69 (792)
Q Consensus 7 ~~~~~~~g~V~~V~dGDTi~v~~~~~~~~g-----------------~~~~~~VrLagIdAPe~~~~~~~~eP~g~eArE 69 (792)
....|++|+|.++.+++++.|..-+ .+. |+.-.+.+|++|..|.. ..+|.+
T Consensus 60 ~d~~wyRa~I~~~~~~~~~~V~fvD--yGn~~~v~~lr~l~~~f~~lP~qA~~c~L~~v~~~~~----------~~ea~~ 127 (169)
T 3ntk_A 60 EDEVFYRAQIRKVLDDGKCEVHFID--FGNNAVTQQFRQLPEELAKPARYSRHCELDASTISKC----------DAALLQ 127 (169)
T ss_dssp TTTEEEEEEEEEECSTTCEEEEETT--TTEEEEESCEECCCHHHHSSCCSSEEEEECGGGSCHH----------HHHHHH
T ss_pred CCCcEEEEEEEEECCCCEEEEEEEe--cCCeEEhhhhhccCHHHhhCCceeEEEEECCcCCCCC----------hHHHHH
Confidence 4678999999999987777777542 111 23445667777765431 689999
Q ss_pred HHHhhcCCCeEEEEEceecCCCCcEE-EEEEeCCccHHHHH
Q 003834 70 FLRKLCIGKEVTFRVDYAVPNIGREF-GTVILGDKNVAMLV 109 (792)
Q Consensus 70 ~Lr~lliGK~V~v~~~~~~d~~gR~~-g~V~l~g~nIn~~L 109 (792)
++++++.|+++.+.+.+..+ |-.+ .+++..+.+||+.|
T Consensus 128 ~f~~l~~~k~l~~~V~~~~~--~~~~~V~L~~~~~~in~~L 166 (169)
T 3ntk_A 128 SFIDTRFSETFQVEILATKG--TGTHVVRLFYQSKNISEKL 166 (169)
T ss_dssp HHHHTTTTSEEEEEEEEECT--TSCEEEEEEETTEEHHHHC
T ss_pred HHHHHhCCCeEEEEEEEecC--CCCEEEEEEECCCCHHHHh
Confidence 99999999999999987533 5555 78888888999876
No 14
>3ntk_A Maternal protein tudor; tudor domain, OB-fold, GERM cell formation, transcription; 1.80A {Drosophila melanogaster} PDB: 3nth_A* 3nti_A*
Probab=91.96 E-value=0.6 Score=45.33 Aligned_cols=82 Identities=16% Similarity=0.139 Sum_probs=61.5
Q ss_pred ccEEEEEEecCCEEEEEecCC--------------------CceEEEEEeeecCCCCCchhHHHHHHHHHHHhcCCeEEE
Q 003834 618 IPAVVEYVLSGHRFKVLIPKE--------------------TCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQRDVEI 677 (792)
Q Consensus 618 ~~a~V~~V~DGdT~~V~~~~~--------------------~~~i~vrL~GIDaPe~~qp~g~eAk~~l~~~ll~r~V~v 677 (792)
+.|+|..+.+++++.|+.-.- ..-++.+|+||..|.. ..+|..++++++.++.+.+
T Consensus 65 yRa~I~~~~~~~~~~V~fvDyGn~~~v~~lr~l~~~f~~lP~qA~~c~L~~v~~~~~----~~ea~~~f~~l~~~k~l~~ 140 (169)
T 3ntk_A 65 YRAQIRKVLDDGKCEVHFIDFGNNAVTQQFRQLPEELAKPARYSRHCELDASTISKC----DAALLQSFIDTRFSETFQV 140 (169)
T ss_dssp EEEEEEEECSTTCEEEEETTTTEEEEESCEECCCHHHHSSCCSSEEEEECGGGSCHH----HHHHHHHHHHTTTTSEEEE
T ss_pred EEEEEEEECCCCEEEEEEEecCCeEEhhhhhccCHHHhhCCceeEEEEECCcCCCCC----hHHHHHHHHHHhCCCeEEE
Confidence 467888887766676664332 2346788899986553 7899999999999999999
Q ss_pred EEeeecCCCcEEEEEEeCCcchHHHH
Q 003834 678 EVETVDRTGTFLGSLWESRTNVAVIL 703 (792)
Q Consensus 678 ~~~~~DkyGR~lg~v~~~~~di~~~L 703 (792)
.+......+-.+..++..+.+||+.|
T Consensus 141 ~V~~~~~~~~~~V~L~~~~~~in~~L 166 (169)
T 3ntk_A 141 EILATKGTGTHVVRLFYQSKNISEKL 166 (169)
T ss_dssp EEEEECTTSCEEEEEEETTEEHHHHC
T ss_pred EEEEecCCCCEEEEEEECCCCHHHHh
Confidence 98886443444488998888999876
No 15
>2diq_A Tudor and KH domain-containing protein; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=68.56 E-value=0.31 Score=43.99 Aligned_cols=73 Identities=11% Similarity=0.025 Sum_probs=56.4
Q ss_pred CCCCCCchhhhHHHHHHHHHhhhCC----CEEEE-EEeeeeeccccccccccCCCCCCCCCCCCCccccccccCCCCC
Q 003834 423 NPRKDEKPAAYAREAREFLRTRLIG----RQVNV-QMEYSRKVVVEAAPVAAGAKGPAGTKGPAGTKGQAAAKGPAGE 495 (792)
Q Consensus 423 ~~~~~~~~~~~~~eare~lR~~liG----k~v~v-~~dy~~~~~~~y~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 495 (792)
.|+.|..+.+...+...|.|.+++. ..+.| .+||++...+...-+++.++.+...+.++-.|+|+.++-+..+
T Consensus 32 ~~~~G~~c~a~~~~d~~wyRA~V~~~~~~~~~~V~fvDyGn~e~v~~~~Lr~l~~~f~~lP~qA~~c~L~~v~p~~~s 109 (110)
T 2diq_A 32 TVHVGDIVAAPLPTNGSWYRARVLGTLENGNLDLYFVDFGDNGDCPLKDLRALRSDFLSLPFQAIECSLARIASGPSS 109 (110)
T ss_dssp CCCTTCEEEECCTTTCSCEEEEECCCCSSSCEEEEETTTCCEEEECGGGCEECCHHHHSSCCSSCCSCSSCSCCSCCC
T ss_pred CCCCCCEEEEEECCCCeEEEEEEEEECCCCeEEEEEEeCCCeEEEehHHhhcCcHHHhCCCcceEEEEECCeEECCCC
Confidence 3445556665555678899999975 45655 5899999988888888888888888889999999999766543
No 16
>3fdr_A Tudor and KH domain-containing protein; TDRD2, structural genomics, structural genomics consortium, SGC, alternative splicing, RNA-binding; 1.75A {Homo sapiens} SCOP: b.34.9.1
Probab=31.96 E-value=2.2 Score=37.14 Aligned_cols=59 Identities=12% Similarity=0.077 Sum_probs=40.6
Q ss_pred CCCCCCchhhhHHHHHHHHHhhhCC----CEEEE-EEeeeeeccccccccccCCCCCCCCCCCC
Q 003834 423 NPRKDEKPAAYAREAREFLRTRLIG----RQVNV-QMEYSRKVVVEAAPVAAGAKGPAGTKGPA 481 (792)
Q Consensus 423 ~~~~~~~~~~~~~eare~lR~~liG----k~v~v-~~dy~~~~~~~y~~~~~~~~~~~~~~g~~ 481 (792)
.|+.|..+.+...+...|+|.++++ ..+.| .+||++...+...-+++.++.+..-+.++
T Consensus 27 ~~~~G~~c~a~~~~d~~wyRA~I~~~~~~~~~~V~fvDyGn~e~v~~~~lr~l~~~f~~lP~qA 90 (94)
T 3fdr_A 27 TVHVGDIVAAPLPTNGSWYRARVLGTLENGNLDLYFVDFGDNGDCPLKDLRALRSDFLSLPFQA 90 (94)
T ss_dssp CCCTTCEEEEEETTTTEEEEEEEEEECTTSCEEEEETTTCCEEEECGGGCEECCGGGGCSCCCC
T ss_pred CCCCCCEEEEEECCCCeEEEEEEEEECCCCeEEEEEEcCCCeEEEEHHHhhhcCHHHhcCCcce
Confidence 4455666666556788999999864 35655 58999998887666666666555555444
Done!