Query 003835
Match_columns 792
No_of_seqs 218 out of 809
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 05:39:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003835.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003835hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2hye_C Cullin-4A, CUL-4A; beta 100.0 2E-156 7E-161 1402.9 71.9 707 85-792 40-759 (759)
2 1ldj_A Cullin homolog 1, CUL-1 100.0 3E-145 1E-149 1306.5 64.0 680 104-792 1-760 (760)
3 3dpl_C Cullin-5; ubiquitin, NE 100.0 3E-88 1E-92 751.5 32.9 345 447-792 4-382 (382)
4 4ap2_B Cullin-3, CUL-3; ubiqui 100.0 3.2E-76 1.1E-80 662.1 39.5 371 85-461 13-396 (410)
5 4a64_A Cullin-4B, CUL4B, CUL-4 100.0 6.3E-73 2.2E-77 624.9 39.1 351 96-446 2-353 (354)
6 4eoz_B Cullin-3, CUL-3; E3 ubi 100.0 5.1E-70 1.7E-74 603.9 31.6 346 97-445 6-364 (364)
7 2wzk_A Cullin-5, CUL-5; UBL co 100.0 8.6E-66 3E-70 575.0 28.3 342 101-446 12-381 (391)
8 2do7_A Cullin-4B, CUL-4B; heli 100.0 3.1E-32 1E-36 241.7 6.3 93 700-792 3-95 (101)
9 1iuy_A Cullin-3 homologue; win 100.0 2.7E-30 9.3E-35 226.1 4.5 86 707-792 5-92 (92)
10 3o2p_E Cell division control p 100.0 1.5E-29 5.3E-34 219.0 7.3 80 712-792 7-88 (88)
11 3tdu_C Cullin-1, CUL-1; E2:E3, 100.0 3.4E-29 1.2E-33 211.8 4.9 73 720-792 3-77 (77)
12 1wi9_A Protein C20ORF116 homol 82.2 1.7 5.7E-05 35.6 4.7 56 731-792 10-65 (72)
13 1p6r_A Penicillinase repressor 75.6 2.9 0.0001 34.6 4.5 60 729-791 10-69 (82)
14 1xn7_A Hypothetical protein YH 74.4 3.7 0.00013 34.2 4.7 44 732-781 6-49 (78)
15 2k4b_A Transcriptional regulat 73.0 1.2 4.3E-05 38.9 1.6 61 729-792 36-96 (99)
16 2jt1_A PEFI protein; solution 71.1 3.4 0.00012 34.4 3.7 39 641-681 25-63 (77)
17 2k02_A Ferrous iron transport 70.2 4.4 0.00015 34.5 4.3 45 732-782 6-50 (87)
18 2xub_A DNA-directed RNA polyme 64.9 4 0.00014 46.6 4.0 123 641-783 34-162 (534)
19 2l02_A Uncharacterized protein 62.8 11 0.00038 31.6 5.1 46 641-693 23-69 (82)
20 1sd4_A Penicillinase repressor 62.6 5.8 0.0002 35.3 3.9 60 729-791 11-70 (126)
21 1okr_A MECI, methicillin resis 60.5 7 0.00024 34.6 4.0 59 730-791 12-70 (123)
22 2g9w_A Conserved hypothetical 57.7 8.7 0.0003 35.1 4.2 59 729-790 10-69 (138)
23 2jt1_A PEFI protein; solution 55.1 12 0.0004 31.0 4.1 57 724-786 4-62 (77)
24 3jth_A Transcription activator 54.8 13 0.00045 31.4 4.7 36 641-678 37-72 (98)
25 3r0a_A Putative transcriptiona 54.4 14 0.00047 33.2 4.8 48 728-781 26-75 (123)
26 2v79_A DNA replication protein 52.7 10 0.00035 34.9 3.8 24 757-780 60-83 (135)
27 2fu4_A Ferric uptake regulatio 51.8 24 0.00081 28.8 5.6 62 728-790 17-80 (83)
28 1tbx_A ORF F-93, hypothetical 51.5 17 0.00057 30.8 4.7 59 730-790 10-68 (99)
29 1qgp_A Protein (double strande 49.6 17 0.00058 29.9 4.3 52 730-787 16-70 (77)
30 1y0u_A Arsenical resistance op 48.7 18 0.0006 30.6 4.4 42 641-692 44-85 (96)
31 3cuo_A Uncharacterized HTH-typ 48.0 31 0.0011 28.8 5.9 57 727-789 23-79 (99)
32 3pqk_A Biofilm growth-associat 46.3 16 0.00056 31.2 3.9 46 641-692 37-82 (102)
33 3omy_A Protein TRAM; DNA bindi 45.2 13 0.00046 28.1 2.6 40 233-273 8-49 (52)
34 2htj_A P fimbrial regulatory p 45.1 31 0.0011 28.1 5.3 45 731-781 3-47 (81)
35 1qbj_A Protein (double-strande 41.0 34 0.0012 28.5 4.8 52 729-786 11-65 (81)
36 1sfx_A Conserved hypothetical 40.3 27 0.00092 29.4 4.4 49 728-782 20-68 (109)
37 2htj_A P fimbrial regulatory p 40.2 36 0.0012 27.7 4.9 48 641-692 15-62 (81)
38 2l01_A Uncharacterized protein 38.7 33 0.0011 28.4 4.2 34 641-674 25-60 (77)
39 2heo_A Z-DNA binding protein 1 37.9 19 0.00065 28.6 2.7 26 641-666 26-51 (67)
40 3k0l_A Repressor protein; heli 37.9 39 0.0013 31.1 5.4 54 728-787 46-101 (162)
41 1u2w_A CADC repressor, cadmium 37.4 32 0.0011 30.5 4.5 35 641-677 57-91 (122)
42 2qww_A Transcriptional regulat 37.1 44 0.0015 30.2 5.6 46 729-780 42-87 (154)
43 3i4p_A Transcriptional regulat 37.0 43 0.0015 31.3 5.6 47 728-780 3-49 (162)
44 3kp7_A Transcriptional regulat 36.7 23 0.00079 32.2 3.5 53 728-787 38-94 (151)
45 1oks_A RNA polymerase alpha su 36.4 44 0.0015 25.3 4.1 46 499-544 4-49 (56)
46 3hsr_A HTH-type transcriptiona 35.8 28 0.00096 31.2 3.9 53 728-786 36-90 (140)
47 1qgp_A Protein (double strande 35.5 25 0.00084 28.9 3.1 33 641-675 32-64 (77)
48 2xub_A DNA-directed RNA polyme 35.1 1.5E+02 0.005 33.5 10.6 115 641-780 288-406 (534)
49 3oop_A LIN2960 protein; protei 34.9 42 0.0014 30.0 5.0 48 729-782 38-85 (143)
50 3cuo_A Uncharacterized HTH-typ 34.7 22 0.00076 29.7 2.8 34 641-676 39-72 (99)
51 1dp3_A TRAM protein; helix-loo 34.0 13 0.00044 28.6 0.9 42 234-275 8-52 (55)
52 4hbl_A Transcriptional regulat 33.6 43 0.0015 30.3 4.9 52 729-786 42-95 (149)
53 2eth_A Transcriptional regulat 33.4 63 0.0022 29.3 6.0 53 729-787 45-99 (154)
54 2vn2_A DNAD, chromosome replic 33.0 27 0.00091 31.5 3.2 26 757-782 60-85 (128)
55 1oyi_A Double-stranded RNA-bin 32.4 28 0.00096 29.2 2.9 32 641-674 31-62 (82)
56 2frh_A SARA, staphylococcal ac 32.3 45 0.0015 29.5 4.6 51 730-786 39-93 (127)
57 1qbj_A Protein (double-strande 32.3 34 0.0012 28.5 3.5 32 641-674 28-59 (81)
58 3s2w_A Transcriptional regulat 32.0 43 0.0015 30.7 4.6 52 729-786 51-104 (159)
59 2hzt_A Putative HTH-type trans 31.9 71 0.0024 27.4 5.7 54 730-790 16-72 (107)
60 3jth_A Transcription activator 31.4 1.2E+02 0.004 25.3 7.0 57 728-791 23-79 (98)
61 3bro_A Transcriptional regulat 31.4 62 0.0021 28.6 5.5 52 729-786 35-90 (141)
62 3g3z_A NMB1585, transcriptiona 31.3 45 0.0015 29.9 4.5 49 728-782 31-79 (145)
63 3bja_A Transcriptional regulat 30.6 54 0.0019 28.8 4.9 52 729-786 34-87 (139)
64 2nyx_A Probable transcriptiona 30.1 63 0.0021 29.9 5.5 51 730-786 47-99 (168)
65 2zkz_A Transcriptional repress 29.8 31 0.0011 29.4 2.9 32 641-675 42-73 (99)
66 3cdh_A Transcriptional regulat 29.6 64 0.0022 29.2 5.4 49 728-782 43-91 (155)
67 2fbh_A Transcriptional regulat 29.5 79 0.0027 28.0 5.9 48 729-782 38-86 (146)
68 2fu4_A Ferric uptake regulatio 29.4 33 0.0011 27.9 2.9 34 641-676 34-72 (83)
69 2fsw_A PG_0823 protein; alpha- 29.4 64 0.0022 27.7 5.0 53 731-790 28-83 (107)
70 3mhs_B Protein SUS1; multi-pro 28.4 90 0.0031 26.9 5.5 59 104-163 34-93 (96)
71 2kko_A Possible transcriptiona 28.3 26 0.00087 30.5 2.1 34 641-676 39-72 (108)
72 1lj9_A Transcriptional regulat 28.3 81 0.0028 27.9 5.7 52 729-786 30-83 (144)
73 3t8r_A Staphylococcus aureus C 28.3 63 0.0022 29.6 4.9 32 641-674 29-60 (143)
74 3tgn_A ADC operon repressor AD 28.1 53 0.0018 29.3 4.4 51 729-786 39-91 (146)
75 1jgs_A Multiple antibiotic res 28.0 75 0.0026 27.9 5.4 52 729-786 35-88 (138)
76 2ou2_A Histone acetyltransfera 27.9 35 0.0012 35.2 3.3 27 640-666 212-238 (280)
77 3f8b_A Transcriptional regulat 27.8 1.3E+02 0.0043 26.5 6.7 56 725-781 9-66 (116)
78 1r1u_A CZRA, repressor protein 27.7 31 0.0011 29.7 2.6 33 641-675 40-72 (106)
79 1i1g_A Transcriptional regulat 27.7 55 0.0019 29.4 4.4 47 729-781 5-51 (141)
80 3lwf_A LIN1550 protein, putati 27.3 64 0.0022 30.3 4.9 45 641-692 45-89 (159)
81 3k2z_A LEXA repressor; winged 27.2 63 0.0022 31.1 5.0 57 724-786 5-62 (196)
82 2oqg_A Possible transcriptiona 27.1 92 0.0031 26.6 5.7 53 728-787 21-73 (114)
83 3e6m_A MARR family transcripti 27.1 64 0.0022 29.5 4.9 47 730-782 55-101 (161)
84 2y75_A HTH-type transcriptiona 27.1 58 0.002 28.9 4.4 45 641-692 27-71 (129)
85 2ozu_A Histone acetyltransfera 26.9 36 0.0012 35.1 3.2 25 641-665 215-239 (284)
86 3eco_A MEPR; mutlidrug efflux 26.7 67 0.0023 28.3 4.8 52 729-786 32-87 (139)
87 1ku9_A Hypothetical protein MJ 26.5 66 0.0023 28.6 4.8 53 730-788 28-83 (152)
88 3bpv_A Transcriptional regulat 26.4 64 0.0022 28.4 4.6 47 729-781 30-76 (138)
89 2gxg_A 146AA long hypothetical 26.4 1.2E+02 0.004 26.9 6.4 52 729-787 38-91 (146)
90 3to7_A Histone acetyltransfera 26.2 36 0.0012 34.9 3.0 25 641-665 209-233 (276)
91 1ub9_A Hypothetical protein PH 26.0 59 0.002 26.9 4.0 47 729-781 17-63 (100)
92 2dbb_A Putative HTH-type trans 26.0 74 0.0025 29.0 5.1 46 729-780 10-55 (151)
93 3cjn_A Transcriptional regulat 26.0 87 0.003 28.5 5.6 53 729-787 53-107 (162)
94 2bv6_A MGRA, HTH-type transcri 25.8 73 0.0025 28.2 4.9 48 729-782 38-85 (142)
95 2nnn_A Probable transcriptiona 25.7 62 0.0021 28.4 4.4 46 730-781 40-85 (140)
96 3ech_A MEXR, multidrug resista 25.6 47 0.0016 29.7 3.5 49 728-782 37-85 (142)
97 3bdd_A Regulatory protein MARR 25.3 1.1E+02 0.0038 26.8 6.0 48 729-782 32-79 (142)
98 2rdp_A Putative transcriptiona 24.9 1E+02 0.0035 27.4 5.8 51 730-786 44-96 (150)
99 1z7u_A Hypothetical protein EF 24.8 1.1E+02 0.0037 26.4 5.7 55 729-790 23-80 (112)
100 2vn2_A DNAD, chromosome replic 24.6 41 0.0014 30.3 2.9 34 641-676 52-85 (128)
101 2d1h_A ST1889, 109AA long hypo 24.6 57 0.0019 27.3 3.7 34 641-676 37-70 (109)
102 1xmk_A Double-stranded RNA-spe 24.4 36 0.0012 28.2 2.2 33 641-675 26-59 (79)
103 2f2e_A PA1607; transcription f 24.2 87 0.003 28.7 5.1 52 731-790 27-80 (146)
104 2fa5_A Transcriptional regulat 24.2 66 0.0022 29.3 4.3 48 729-782 50-97 (162)
105 3df8_A Possible HXLR family tr 24.0 46 0.0016 29.0 3.0 33 641-675 43-76 (111)
106 3lmm_A Uncharacterized protein 24.0 29 0.001 39.9 2.1 118 641-786 445-568 (583)
107 2jsc_A Transcriptional regulat 23.9 44 0.0015 29.4 2.9 35 641-677 35-69 (118)
108 3deu_A Transcriptional regulat 23.8 61 0.0021 30.1 4.1 48 729-782 54-102 (166)
109 2dk5_A DNA-directed RNA polyme 23.6 1.2E+02 0.0041 25.6 5.5 45 730-780 22-68 (91)
110 3r4k_A Transcriptional regulat 23.5 50 0.0017 33.5 3.6 45 641-693 22-66 (260)
111 3k6t_A Female germline-specifi 23.5 44 0.0015 26.2 2.3 38 284-321 6-43 (60)
112 2dk5_A DNA-directed RNA polyme 23.5 80 0.0027 26.7 4.3 25 641-665 37-61 (91)
113 3eyy_A Putative iron uptake re 23.4 75 0.0026 29.1 4.5 53 729-782 20-72 (145)
114 3nrv_A Putative transcriptiona 23.4 73 0.0025 28.5 4.4 48 729-782 41-88 (148)
115 2oqg_A Possible transcriptiona 23.4 40 0.0014 29.0 2.4 33 641-675 35-67 (114)
116 2p5v_A Transcriptional regulat 23.3 71 0.0024 29.6 4.4 46 729-780 11-56 (162)
117 3f6o_A Probable transcriptiona 23.3 33 0.0011 30.1 2.0 34 641-676 32-65 (118)
118 3boq_A Transcriptional regulat 23.2 60 0.0021 29.5 3.8 48 729-782 48-96 (160)
119 2pex_A Transcriptional regulat 23.1 67 0.0023 28.9 4.1 47 730-782 49-95 (153)
120 1xd7_A YWNA; structural genomi 23.0 56 0.0019 30.0 3.5 32 642-675 25-56 (145)
121 2cfx_A HTH-type transcriptiona 22.9 77 0.0026 28.7 4.5 46 729-780 6-51 (144)
122 2pq8_A Probable histone acetyl 22.5 38 0.0013 34.9 2.3 26 640-665 208-233 (278)
123 2pn6_A ST1022, 150AA long hypo 22.5 86 0.0029 28.4 4.7 46 729-780 4-49 (150)
124 2e1c_A Putative HTH-type trans 21.9 82 0.0028 29.8 4.5 47 728-780 27-73 (171)
125 2cg4_A Regulatory protein ASNC 21.7 81 0.0028 28.8 4.4 46 729-780 9-54 (152)
126 1z91_A Organic hydroperoxide r 21.5 92 0.0031 27.7 4.7 47 730-782 42-88 (147)
127 2fxa_A Protease production reg 21.5 84 0.0029 30.5 4.7 47 730-782 50-96 (207)
128 2k02_A Ferrous iron transport 21.3 77 0.0026 26.8 3.7 33 641-675 17-49 (87)
129 2pg4_A Uncharacterized protein 21.2 48 0.0016 27.7 2.4 45 737-787 24-70 (95)
130 1u2w_A CADC repressor, cadmium 21.2 1.5E+02 0.0051 26.0 5.9 56 729-790 43-98 (122)
131 3bj6_A Transcriptional regulat 21.2 97 0.0033 27.7 4.8 47 730-782 42-88 (152)
132 2fbi_A Probable transcriptiona 21.2 71 0.0024 28.1 3.8 48 729-782 37-84 (142)
133 1q1h_A TFE, transcription fact 21.1 54 0.0019 28.2 2.9 33 641-675 34-66 (110)
134 1xn7_A Hypothetical protein YH 21.0 70 0.0024 26.3 3.3 33 641-675 17-49 (78)
135 3on0_A Protein TRAM; DNA bindi 21.0 1.3E+02 0.0045 27.0 5.2 41 233-274 8-50 (127)
136 2a61_A Transcriptional regulat 20.7 91 0.0031 27.6 4.4 48 729-782 34-81 (145)
137 2dt7_A Splicing factor 3A subu 20.5 38 0.0013 24.1 1.3 16 486-501 5-20 (38)
138 2hr3_A Probable transcriptiona 20.3 1.3E+02 0.0045 26.6 5.5 46 731-782 38-84 (147)
139 3jw4_A Transcriptional regulat 20.3 74 0.0025 28.5 3.8 48 729-782 42-91 (148)
140 2kko_A Possible transcriptiona 20.2 1.1E+02 0.0037 26.3 4.7 62 721-789 18-79 (108)
141 2xrn_A HTH-type transcriptiona 20.2 60 0.0021 32.5 3.3 44 641-692 22-65 (241)
142 1w9c_A CRM1 protein, exportin 20.2 7.6E+02 0.026 25.8 13.9 174 304-501 37-213 (321)
143 1s3j_A YUSO protein; structura 20.2 1.2E+02 0.0042 27.1 5.3 47 730-782 39-85 (155)
No 1
>2hye_C Cullin-4A, CUL-4A; beta propeller, ring finger, zinc finger, propeller cluster, helical repeats, cullin repeats, protein binding; HET: DNA; 3.10A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 4a0k_A* 4a0c_C 4a0l_E*
Probab=100.00 E-value=2.1e-156 Score=1402.87 Aligned_cols=707 Identities=60% Similarity=0.962 Sum_probs=684.1
Q ss_pred CcceeeecCCCCCCCCCchHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHH
Q 003835 85 AKKLVIKLLKAKPTLPTNFEEDTWAKLKLAIKAIFLKQPTSCDLEKLYQAVNDLCLHKMGGNLYQRIEKECEEHISAAIR 164 (792)
Q Consensus 85 ~~k~~ik~~~~~~~~~~~~~e~~W~~L~~AI~~I~~~~~~~~s~e~LY~~Vy~lC~~k~~e~LY~~l~~~~~~~l~~~~~ 164 (792)
++|++|||||+.|.+|++|++++|..|++||++|+.+++.++|||+||++||++|++++|++||++|++.|+.|+..++.
T Consensus 40 ~~~~~i~~~~~~~~~~~~~~e~~W~~L~~ai~~I~~~~~~~~s~e~LY~~vy~lc~~k~~~~LY~~l~~~~~~~l~~~~~ 119 (759)
T 2hye_C 40 SKKLVIKNFRDRPRLPDNYTQDTWRKLHEAVRAVQSSTSIRYNLEELYQAVENLCSHKVSPMLYKQLRQACEDHVQAQIL 119 (759)
T ss_dssp -CCCCEETCCCCSCSSCCTTTTHHHHHHHHHHTTSTTCCCSSCHHHHHHHHHHHCCTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccCCCCCCCCCcchHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999898999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred hhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCcccHHHHHHHHHHHHhccccchHHHHHHHHHHH
Q 003835 165 SLVGQSPDLVVFLSLVERCWQDLCDQMLMIRGIALYLDRTYVKQTPNVRSLWDMGLQLFRKYLSSYSEVEHKTVTGLLRM 244 (792)
Q Consensus 165 ~l~~~~~d~~~~L~~~~~~W~~~~~~l~~i~~iF~YLDR~Yv~~~~~~~sI~dlgL~lFr~~v~~~~~l~~~l~~~iL~l 244 (792)
.+.....+++.||..|..+|++|+.++.+|++||+||||+|+.++++.++||++||.+||++|+.++.+++++++++|++
T Consensus 120 ~l~~~~~~~~~~L~~~~~~W~~~~~~~~~i~~if~YLDR~yv~~~~~~~~I~~lgL~lfr~~v~~~~~i~~~l~~~lL~l 199 (759)
T 2hye_C 120 PFREDSLDSVLFLKKINTCWQDHCRQMIMIRSIFLFLDRTYVLQNSTLPSIWDMGLELFRTHIISDKMVQSKTIDGILLL 199 (759)
T ss_dssp HHTSCCCCTTHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTTSCSSSCCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHH
T ss_pred HHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHhhCCCCCCcHHHHHHHHHHHHHhcCHhHHHHHHHHHHHH
Confidence 77553334368999999999999999999999999999999999876799999999999999998777999999999999
Q ss_pred HHHHhcCCcCChHHHHHHHHHHHhhhccHHhhHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHHHHhccccC
Q 003835 245 IERERLGEAVDRTLLNHLLKMFTALGIYSESFEKPFLECTSEFYAAEGMKYMQQSDVPDYLKHVEIRLHEEHERCLLYLD 324 (792)
Q Consensus 245 I~~eR~g~~id~~llk~~i~ml~~L~vY~~~FE~~fL~~T~~yY~~es~~~l~~~s~~eYL~~ve~~l~eE~~R~~~yL~ 324 (792)
|+++|+|+.||+.+|++++.||++|++|.+.||++||++|++||+.++++|+++.++++||++|+.+|++|.+||..||+
T Consensus 200 I~~eR~Ge~id~~llk~vi~ml~~L~vY~~~FE~~fL~~T~~fY~~e~~~~l~~~~~~~Yl~~~e~rl~eE~~r~~~yL~ 279 (759)
T 2hye_C 200 IERERSGEAVDRSLLRSLLGMLSDLQVYKDSFELKFLEETNCLYAAEGQRLMQEREVPEYLNHVSKRLEEEGDRVITYLD 279 (759)
T ss_dssp HHTTTTTCCCCHHHHHHHHHHHHHTTCHHHHTHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTHHHHTTTSC
T ss_pred HHHHhcCCCCcHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHhhccc-cchHHHHHHHHHHHHHhhcccccCchhhH
Q 003835 325 VSTRKPLIATAERQLLERHISAILDKGFTMLMDGHRTEDLQRMYSLFSRV-NALESLRQALAMYIRRTGHGIVMDEEKDK 403 (792)
Q Consensus 325 ~sT~~~L~~~l~~~LI~~~~~~ll~~g~~~ll~~~~~~~L~~ly~L~~~~-~~l~~l~~~~~~yI~~~G~~iv~~~~~~~ 403 (792)
++|.++|.++|+++||.+|++.|+++||..||++++.++|++||+||+++ ++++.|+..|++||++.|.+++.+.++++
T Consensus 280 ~~t~~~l~~~~~~~Li~~~~~~ll~~~~~~lL~~~~~~dL~~mY~L~~rv~~~l~~l~~~~~~~I~~~g~~iv~~~~~~~ 359 (759)
T 2hye_C 280 HSTQKPLIACVEKQLLGEHLTAILQKGLDHLLDENRVPDLAQMYQLFSRVRGGQQALLQHWSEYIKTFGTAIVINPEKDK 359 (759)
T ss_dssp TTTHHHHHHHHHHHHTTTCSHHHHHTTHHHHHTTTCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHSCGGGTT
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcCCHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhHHHhcCcccHH
Confidence 99999999999999999999999988999999999999999999999999 99999999999999999999998888888
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCCCCCHHHHHhhhhchhee
Q 003835 404 DMVSSLLEFKASLDTIWEQSFSKNEAFCNTIKDAFEYLINLRQNRPAELIAKFLDEKLRAGNKGTSEEELEGTLDKVLVL 483 (792)
Q Consensus 404 ~~V~~Ll~l~~~~~~ii~~~F~~~~~f~~~l~~af~~~iN~~~~~~~e~Laky~D~~Lr~~~k~~~~~e~e~~ld~i~~l 483 (792)
.||+.||++|++|+.++.+||++|+.|..++++||+.|+|.+.+++||+||+|||.+||+|.|+.+++|+|..|++|+.|
T Consensus 360 ~~V~~ll~~~~k~~~lv~~~F~~d~~f~~al~~af~~fiN~~~~~~~E~la~y~D~~Lk~~~k~~~e~e~e~~L~~i~~l 439 (759)
T 2hye_C 360 DMVQDLLDFKDKVDHVIEVCFQKNERFVNLMKESFETFINKRPNKPAELIAKHVDSKLRAGNKEATDEELERTLDKIMIL 439 (759)
T ss_dssp THHHHHHHHHHHHHHHHHTTTTTCHHHHHHHHHHHHHHHTTSCSHHHHHHHHHHHHHHSSCGGGCCSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhccCCCCCCHHHHHHHHHHhhhh
Confidence 99999999999999999999999999999999999999999877899999999999999999999999999999999999
Q ss_pred eecccChhHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHhhhhhHHHHHHHHHHhHHhhHHHHHHHHHHhhhccCCC
Q 003835 484 FRFIQGKDVFEAFYKKDLAKRLLLGKSASIDAEKSMISKLKTECGSQFTNKLEGMFKDIELSKEINESFKQSSQARTKLP 563 (792)
Q Consensus 484 F~~i~~KD~Fe~~Yk~~LakRLL~~~s~s~d~E~~mi~kLk~ecG~~fT~kLe~MfkDi~~S~~l~~~f~~~~~~~~~~~ 563 (792)
|+||++||+|++||+++||+|||+++|+|.|+|+.||++||.+||.+||+|||+||+||..|++++..|+++... ...+
T Consensus 440 f~~i~~KDvF~~~Y~~~LakRLL~~~s~s~d~E~~~i~~Lk~~~G~~~t~kle~M~~Di~~S~~l~~~f~~~~~~-~~~~ 518 (759)
T 2hye_C 440 FRFIHGKDVFEAFYKKDLAKRLLVGKSASVDAEKSMLSKLKHECGAAFTSKLEGMFKDMELSKDIMVHFKQHMQN-QSDS 518 (759)
T ss_dssp HTTCSCHHHHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHTTTCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCC
T ss_pred hhhcCCHHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998754 2334
Q ss_pred CCcceEEEEeecCCCCCCCCCCccCChHHHHHHHHHHHHHHhcCCceeEEeecCcceEEEEEEecCCeeEEEEeecc---
Q 003835 564 SGIEMSVHVLTTGYWPTYPPMDVRLPHELNVYQDIFKEFYLSKYSGRRLMWQNSLGHCVLKAEFPKGKKELAVSLFQ--- 640 (792)
Q Consensus 564 ~~~~f~v~VLt~~~WP~~~~~~~~LP~~l~~~~~~F~~fY~~k~~gRkL~W~~~Lg~~~i~~~f~~~~~el~vs~~Q--- 640 (792)
.+++|+|.|||+|+||.++..++.||++|+.+++.|++||..+|+||+|+|+|+||+|+|+++|++|+|+|+||+||
T Consensus 519 ~~~~~~v~VLs~~~WP~~~~~~~~lP~~l~~~~~~F~~fY~~~~~gRkL~W~~~lg~~~l~~~~~~~~~~l~vs~~Qa~i 598 (759)
T 2hye_C 519 GPIDLTVNILTMGYWPTYTPMEVHLTPEMIKLQEVFKAFYLGKHSGRKLQWQTTLGHAVLKAEFKEGKKEFQVSLFQTLV 598 (759)
T ss_dssp CCCEEEEEEEETTTSCCCCCCCCCCCHHHHHHHHHHHHHHHTTSCSEECCBCGGGCEEEEECCCSSCCCEEEEEHHHHHH
T ss_pred CCCceEEEEeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhCCCCEEEeccccCcEEEEEEeCCceEEEEEcHHHHHH
Confidence 57999999999999999998899999999999999999999999999999999999999999999999999999999
Q ss_pred ---------ccHHHHHHHhCCCHHHHHHHHHHhhcCCceeeecCCCCCCCCCCCeEEEccCCCCCceeEEecccccccch
Q 003835 641 ---------LSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLPKGRDVEDDDSFVFNEGFTAPLYRIKVNAIQMKETV 711 (792)
Q Consensus 641 ---------lt~~eI~~~T~i~~~eL~r~L~sL~~~k~kiL~k~p~~~~i~~~d~f~~N~~Ft~~~~riki~~i~~ket~ 711 (792)
+|++||++.||||+++|+|+|++|+|+|.+||.++|+|+++.++|+|.||.+|+++++|||||+++.++++
T Consensus 599 LllFn~~~~lt~~ei~~~t~i~~~~l~r~L~sL~~~k~~vL~~~p~~~~v~~~d~f~lN~~f~~~~~riki~~i~~~e~~ 678 (759)
T 2hye_C 599 LLMFNEGDGFSFEEIKMATGIEDSELRRTLQSLACGKARVLIKSPKGKEVEDGDKFIFNGEFKHKLFRIKINQIQMKETV 678 (759)
T ss_dssp HHHTTSCCCEEHHHHHHHTCCCHHHHHHHHHTTTTTTTCSEEETTCSSSCCSSCEEEECCCCCCSCSSEECGGGGGCCCH
T ss_pred HHHhcCCCCcCHHHHHHHHCcCHHHHHHHHHHHHccCCceeecCCCCCCCCCCCEEEeeccccCCceEEEeccccccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999888999
Q ss_pred hhhhhhhHHHHhhhhhhhhHHHHHhhhcccccChHHHHHHHHHhcCCCCChHHHHHHHHHhhhhcccccCCCCCCceeec
Q 003835 712 EENTSTTERVFQDRQYQVDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQIYNYL 791 (792)
Q Consensus 712 ~e~~~t~e~v~~dR~~~i~AaIVRIMK~rK~l~h~~Li~ev~~~lrF~~~~~~iKk~IE~LIereYl~Rd~~d~~~Y~Yl 791 (792)
+|+++|+++|++||++.||||||||||+||+|+|++|+.||++|++|+|++.+||+|||+|||||||+||++|+++|+||
T Consensus 679 ~e~~~t~~~v~~dR~~~i~AaIVRIMK~rK~l~h~~Lv~ev~~ql~F~p~~~~IKk~Ie~LIereYleR~~~~~~~y~Yl 758 (759)
T 2hye_C 679 EEQVSTTERVFQDRQYQIDAAIVRIMKMRKTLGHNLLVSELYNQLKFPVKPGDLKKRIESLIDRDYMERDKDNPNQYHYV 758 (759)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSEEETHHHHHHHHHHSSSCCCHHHHHHHHHHHHHTTSCBCCSSCTTEEECC
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccceecCCCCCCeeEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred C
Q 003835 792 A 792 (792)
Q Consensus 792 A 792 (792)
|
T Consensus 759 A 759 (759)
T 2hye_C 759 A 759 (759)
T ss_dssp C
T ss_pred C
Confidence 8
No 2
>1ldj_A Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc ring finger, ligase, ubiquitin, ubiquitination, SCF; 3.00A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 1u6g_A 1ldk_A 1ldk_B 3rtr_A
Probab=100.00 E-value=2.9e-145 Score=1306.51 Aligned_cols=680 Identities=33% Similarity=0.558 Sum_probs=643.5
Q ss_pred HHHHHHHHHHHHHHHHhcC-CCCccHHHHHHHHHhhhccC---------------------------chhHHHHHHHHHH
Q 003835 104 EEDTWAKLKLAIKAIFLKQ-PTSCDLEKLYQAVNDLCLHK---------------------------MGGNLYQRIEKEC 155 (792)
Q Consensus 104 ~e~~W~~L~~AI~~I~~~~-~~~~s~e~LY~~Vy~lC~~k---------------------------~~e~LY~~l~~~~ 155 (792)
++++|..|++||+.|+.++ .+..+||+||++||++|+++ +|++||++++++|
T Consensus 1 f~~~W~~L~~ai~~I~~~~~~s~~~~~~LY~~vYn~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~LY~~l~~~l 80 (760)
T 1ldj_A 1 LDQIWDDLRAGIQQVYTRQSMAKSRYMELYTHVYNYCTSVHQSNQARGAGVPPSKSKKGQTPGGAQFVGLELYKRLKEFL 80 (760)
T ss_dssp CHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHTCCC----------------------------TTHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCcccCCCcccccccccccccccccCcchhHHHHHHHHHHHH
Confidence 3789999999999999984 34557999999999999997 7899999999999
Q ss_pred HHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCC-----CcccHHHHHHHHHHHHhccc
Q 003835 156 EEHISAAIRSLVGQSPDLVVFLSLVERCWQDLCDQMLMIRGIALYLDRTYVKQTP-----NVRSLWDMGLQLFRKYLSSY 230 (792)
Q Consensus 156 ~~~l~~~~~~l~~~~~d~~~~L~~~~~~W~~~~~~l~~i~~iF~YLDR~Yv~~~~-----~~~sI~dlgL~lFr~~v~~~ 230 (792)
+.|+..++..+....+ +.||..|..+|++|+.++.+|++||+||||+||.++. ++++||++||.+||++||.
T Consensus 81 ~~~l~~~~~~~~~~~~--e~lL~~~~~~W~~~~~~~~~i~~if~YLdR~yv~~~~~~g~~~~~~I~~lgL~~fr~~vf~- 157 (760)
T 1ldj_A 81 KNYLTNLLKDGEDLMD--ESVLKFYTQQWEDYRFSSKVLNGICAYLNRHWVRRECDEGRKGIYEIYSLALVTWRDCLFR- 157 (760)
T ss_dssp HHHHHHHHHTTCSCTT--TTHHHHHHHHHHHHHHHHHHHHHHTHHHHHHSSSCCC-------CCHHHHHHHTTHHHHTT-
T ss_pred HHHHHHHHHHHhhcCh--HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHcccccccCCCcccHHHHHHHHHHHHHHH-
Confidence 9999998876543333 6899999999999999999999999999999999974 2679999999999999997
Q ss_pred cchHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHHHHhh--------------hccHHhhHHHHHHHHHHHHHHHHHHHh
Q 003835 231 SEVEHKTVTGLLRMIERERLGEAVDRTLLNHLLKMFTAL--------------GIYSESFEKPFLECTSEFYAAEGMKYM 296 (792)
Q Consensus 231 ~~l~~~l~~~iL~lI~~eR~g~~id~~llk~~i~ml~~L--------------~vY~~~FE~~fL~~T~~yY~~es~~~l 296 (792)
++++++++++|.+|+++|+|+.||+.+|++++.||++| ++|.+.||++||++|++||+.++++|+
T Consensus 158 -~l~~~l~~~lL~lI~~eR~Ge~id~~lik~vi~ml~~Lg~~~~~~~~~~~~l~vY~~~FE~~fL~~t~~fY~~es~~~l 236 (760)
T 1ldj_A 158 -PLNKQVTNAVLKLIEKERNGETINTRLISGVVQSYVELGLNEDDAFAKGPTLTVYKESFESQFLADTERFYTRESTEFL 236 (760)
T ss_dssp -TTTTHHHHHHHHHHTTTSCCTTCCTHHHHHHHHHHHHTSCCSSSSSCSSCCCHHHHHHTHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCcccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 69999999999999999999999999999999999985 689999999999999999999999999
Q ss_pred hcCChhhHHHHHHHHHHHHHHHhccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHhhccc-c
Q 003835 297 QQSDVPDYLKHVEIRLHEEHERCLLYLDVSTRKPLIATAERQLLERHISAILDKGFTMLMDGHRTEDLQRMYSLFSRV-N 375 (792)
Q Consensus 297 ~~~s~~eYL~~ve~~l~eE~~R~~~yL~~sT~~~L~~~l~~~LI~~~~~~ll~~g~~~ll~~~~~~~L~~ly~L~~~~-~ 375 (792)
++.++++||++|+.+|++|.+||..||+++|.++|+++|+++||.+|++.|+ +||..||++++.+||++||+||+|+ +
T Consensus 237 ~~~~~~~Yl~~~e~~l~eE~~R~~~yL~~~t~~~l~~~~~~~Li~~~~~~l~-~~~~~ll~~~~~~dL~~my~L~~rv~~ 315 (760)
T 1ldj_A 237 QQNPVTEYMKKAEARLLEEQRRVQVYLHESTQDELARKCEQVLIEKHLEIFH-TEFQNLLDADKNEDLGRMYNLVSRIQD 315 (760)
T ss_dssp HHSCTTSSHHHHHHHHHHHHHTTTTTTCSSSSHHHHHHHHHHHSSSSSHHHH-HHHHHHHHSCCTTHHHHHHHHHHHSTT
T ss_pred HcCCHHHHHHHHHHHHHHHHHHHHHhcCHhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCCHHHHHHHHHHhCcCcc
Confidence 9999999999999999999999999999999999999999999999999876 6999999999999999999999999 9
Q ss_pred chHHHHHHHHHHHHHhhcccccCc-----hhhHHHHHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHHHHHhcC-----
Q 003835 376 ALESLRQALAMYIRRTGHGIVMDE-----EKDKDMVSSLLEFKASLDTIWEQSFSKNEAFCNTIKDAFEYLINLR----- 445 (792)
Q Consensus 376 ~l~~l~~~~~~yI~~~G~~iv~~~-----~~~~~~V~~Ll~l~~~~~~ii~~~F~~~~~f~~~l~~af~~~iN~~----- 445 (792)
|++.|+..|++||++.|.+++.+. ..++.||+.||++|++|+.++.+||++|+.|..++++||+.|||.+
T Consensus 316 gl~~l~~~~~~~i~~~G~~~v~~~~~~~~~~~~~~V~~ll~l~~k~~~lv~~~F~~d~~f~~al~~af~~~iN~~~~~~~ 395 (760)
T 1ldj_A 316 GLGELKKLLETHIHNQGLAAIEKCGEAALNDPKMYVQTVLDVHKKYNALVMSAFNNDAGFVAALDKACGRFINNNAVTKM 395 (760)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTTSGGGCHHHHHHHHHHHHHHHHHHHHTTTTTCHHHHHHHHHHHHHHHHSSHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcccccCHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhcCCccccc
Confidence 999999999999999999998763 4567999999999999999999999999999999999999999976
Q ss_pred ---CCCchhHHHHHHHHHHhcCCCCCCHHHHHhhhhchheeeecccChhHHHHHHHHHHHHHhcCCCCCChHHHHHHHHH
Q 003835 446 ---QNRPAELIAKFLDEKLRAGNKGTSEEELEGTLDKVLVLFRFIQGKDVFEAFYKKDLAKRLLLGKSASIDAEKSMISK 522 (792)
Q Consensus 446 ---~~~~~e~Laky~D~~Lr~~~k~~~~~e~e~~ld~i~~lF~~i~~KD~Fe~~Yk~~LakRLL~~~s~s~d~E~~mi~k 522 (792)
.+++||+||+|||.+||+|.|+.+++|+|..|++++.||+||++||+|++||+++||+|||+++|+|.|+|+.||++
T Consensus 396 ~~~~~~~~E~la~y~D~~Lkk~~k~~~e~e~e~~L~~i~~lf~~i~~KDvF~~~Y~~~LakRLL~~~s~s~d~E~~~i~~ 475 (760)
T 1ldj_A 396 AQSSSKSPELLARYCDSLLKKSSKNPEEAELEDTLNQVMVVFKYIEDKDVFQKFYAKMLAKRLVHQNSASDDAEASMISK 475 (760)
T ss_dssp HTSTTHHHHHHHHHHHHHHBCCSSCCCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHTTCBSCHHHHHHHHHH
T ss_pred cccccccHHHHHHHhHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHH
Confidence 25899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhHHHHHHHHHHhHHhhHHHHHHHHHHhhhccCCCCCcceEEEEeecCCCCCCCCCCccCChHHHHHHHHHHHH
Q 003835 523 LKTECGSQFTNKLEGMFKDIELSKEINESFKQSSQARTKLPSGIEMSVHVLTTGYWPTYPPMDVRLPHELNVYQDIFKEF 602 (792)
Q Consensus 523 Lk~ecG~~fT~kLe~MfkDi~~S~~l~~~f~~~~~~~~~~~~~~~f~v~VLt~~~WP~~~~~~~~LP~~l~~~~~~F~~f 602 (792)
||.+||.+||+|||+||+||..|++++..|+++... ....+++|+|.|||+|+||.++..++.||++|+.+++.|++|
T Consensus 476 Lk~~~G~~~t~kle~M~~Di~~S~~l~~~f~~~~~~--~~~~~~~~~v~VLs~~~WP~~~~~~~~lP~~l~~~~~~F~~f 553 (760)
T 1ldj_A 476 LKQACGFEYTSKLQRMFQDIGVSKDLNEQFKKHLTN--SEPLDLDFSIQVLSSGSWPFQQSCTFALPSELERSYQRFTAF 553 (760)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--TCCCSSEEEEEEEETTTSCCCCCSCCCCCGGGHHHHHHHHHH
T ss_pred HHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--ccCCCCCeeEEecCCCCCCCCCCCCCcCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999997654 123469999999999999999888999999999999999999
Q ss_pred HHhcCCceeEEeecCcceEEEEEEecCCeeEEEEeecc------------ccHHHHHHHhCCCHHHHHHHHHHhhcCCce
Q 003835 603 YLSKYSGRRLMWQNSLGHCVLKAEFPKGKKELAVSLFQ------------LSFQDIKDATGIEDKELRRTLQSLACGKVR 670 (792)
Q Consensus 603 Y~~k~~gRkL~W~~~Lg~~~i~~~f~~~~~el~vs~~Q------------lt~~eI~~~T~i~~~eL~r~L~sL~~~k~k 670 (792)
|.++|+||+|+|+|+||+|+|+++|++++|+|+||+|| +|++||++.||||+++|+++|++|+ +.+
T Consensus 554 Y~~~~~~RkL~W~~~lg~~~l~~~~~~~~~~l~vs~~Qa~iLllFn~~~~~t~~ei~~~t~i~~~~l~r~L~~l~--k~~ 631 (760)
T 1ldj_A 554 YASRHSGRKLTWLYQLSKGELVTNCFKNRYTLQASTFQMAILLQYNTEDAYTVQQLTDSTQIKMDILAQVLQILL--KSK 631 (760)
T ss_dssp TTTTCTTCCEEECGGGCCCEEEESSSSSCCEEECCHHHHHHHHGGGSSSEEEHHHHHHHTCCCHHHHHHHHHHHH--HTT
T ss_pred HHHhCCCCeEEEecccccEEEEEEECCceEEEEEcHHHHHHHHHhcCCCCcCHHHHHHHHCcCHHHHHHHHHHHH--HCC
Confidence 99999999999999999999999999999999999999 8999999999999999999999998 888
Q ss_pred eeecCC-----CCCCCCCCCeEEEccCCCCCceeEEecccccccchhhhhhhhHHHHhhhhhhhhHHHHHhhhcccccCh
Q 003835 671 VLQKLP-----KGRDVEDDDSFVFNEGFTAPLYRIKVNAIQMKETVEENTSTTERVFQDRQYQVDAAIVRIMKTRKVLSH 745 (792)
Q Consensus 671 iL~k~p-----~~~~i~~~d~f~~N~~Ft~~~~riki~~i~~ket~~e~~~t~e~v~~dR~~~i~AaIVRIMK~rK~l~h 745 (792)
||.+.| +|+++.++|+|+||.+|++|++||+||.++.+++++|+++|+++|++||++.||||||||||+||+|+|
T Consensus 632 iL~~~~~~~~~~~~~~~~~~~f~lN~~F~~k~~ri~i~~~~~~e~~~e~~~~~~~v~~dR~~~i~AaIVRIMK~rK~l~h 711 (760)
T 1ldj_A 632 LLVLEDENANVDEVELKPDTLIKLYLGYKNKKLRVNINVPMKTEQKQEQETTHKNIEEDRKLLIQAAIVRIMKMRKVLKH 711 (760)
T ss_dssp TEECSCTTCCTTTCCCCTTCEEEECSSCCCSSSSBCCCCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSEEEH
T ss_pred cceeCCCccccccCCCCCCCEEEeeccccCCceEEEecCccccccchhhhhHHHHHHHHHHhHheeeehhhhhccCCCcH
Confidence 999665 889999999999999999999999999877778888888999999999999999999999999999999
Q ss_pred HHHHHHHHHhc--CCCCChHHHHHHHHHhhhhcccccCCCCCCceeecC
Q 003835 746 TLLITELFQQL--KFPIKPADLKKRIESLIDREYLERDKNNPQIYNYLA 792 (792)
Q Consensus 746 ~~Li~ev~~~l--rF~~~~~~iKk~IE~LIereYl~Rd~~d~~~Y~YlA 792 (792)
++|+.||++|+ +|+|++.+||+|||+|||||||+||++|+++|+|||
T Consensus 712 ~~Lv~ev~~ql~~rF~p~~~~IKk~Ie~LIereYl~R~~~~~~~y~YlA 760 (760)
T 1ldj_A 712 QQLLGEVLTQLSSRFKPRVPVIKKCIDILIEKEYLERVDGEKDTYSYLA 760 (760)
T ss_dssp HHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEECSSSTTEEEECC
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHhhccceeeCCCCCcceeeCC
Confidence 99999999999 599999999999999999999999999999999998
No 3
>3dpl_C Cullin-5; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} PDB: 3dqv_C
Probab=100.00 E-value=3e-88 Score=751.49 Aligned_cols=345 Identities=33% Similarity=0.512 Sum_probs=319.3
Q ss_pred CCchhHHHHHHHHHHhcC--CCCCCHHHHHhhhhchheeeecccChhHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHH
Q 003835 447 NRPAELIAKFLDEKLRAG--NKGTSEEELEGTLDKVLVLFRFIQGKDVFEAFYKKDLAKRLLLGKSASIDAEKSMISKLK 524 (792)
Q Consensus 447 ~~~~e~Laky~D~~Lr~~--~k~~~~~e~e~~ld~i~~lF~~i~~KD~Fe~~Yk~~LakRLL~~~s~s~d~E~~mi~kLk 524 (792)
+++||+||+|||.+||+| .|+.+++|+|..|++++.||+||++||+|++||+++||+|||+++|+|.|+|+.||++||
T Consensus 4 ~~~~E~la~y~D~~lkk~~~~k~~~~~e~e~~L~~v~~lf~~l~~KDvF~~~Y~~~LakRLL~~~s~s~d~E~~~i~kLK 83 (382)
T 3dpl_C 4 SKCPEELANYCDMLLRKTPLSKKLTSEEIEAKLKEVLKKLKYVQNKDVFMRYHKAHLTRRLILDISADSEIEENMVEWLR 83 (382)
T ss_dssp CCSHHHHHHHHHHHHBSSHHHHTSCHHHHHHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHTTCBSCHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHH
Confidence 579999999999999998 478899999999999999999999999999999999999999999999999999999999
Q ss_pred Hhhhh--hHHHHHHHHHHhHHhhHHHHHHHHHHhhhccCCCCCcceEEEEeecCCCCCCC-CCCccCChHHHHHHHHHHH
Q 003835 525 TECGS--QFTNKLEGMFKDIELSKEINESFKQSSQARTKLPSGIEMSVHVLTTGYWPTYP-PMDVRLPHELNVYQDIFKE 601 (792)
Q Consensus 525 ~ecG~--~fT~kLe~MfkDi~~S~~l~~~f~~~~~~~~~~~~~~~f~v~VLt~~~WP~~~-~~~~~LP~~l~~~~~~F~~ 601 (792)
+||. +||+|||+||+||+.|++++..|+++.........+++|+|.|||+|+||.++ ..++.||++|+.+++.|++
T Consensus 84 -~cG~~~~ft~kle~M~kDi~~S~~l~~~f~~~~~~~~~~~~~~~~~v~VLs~~~WP~~~~~~~~~lP~~l~~~~~~F~~ 162 (382)
T 3dpl_C 84 -EVGMPADYVNKLARMFQDIKVSEDLNQAFKEMHKNNKLALPADSVNIKILNAGAWSRSSEKVFVSLPTELEDLIPEVEE 162 (382)
T ss_dssp -HTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC--CCCGGGEEEEEEEHHHHCCCSCCCCCCCCHHHHTTHHHHHH
T ss_pred -HcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCceEEEEccCCcCCCCCCCCCccCCHHHHHHHHHHHH
Confidence 9995 99999999999999999999999998654111123689999999999999985 5789999999999999999
Q ss_pred HHHhcCCceeEEeecCcceEEEEEEecCCeeEEEEeecc--------------ccHHHHHHHhCCCHHHHHHHHHHhhc-
Q 003835 602 FYLSKYSGRRLMWQNSLGHCVLKAEFPKGKKELAVSLFQ--------------LSFQDIKDATGIEDKELRRTLQSLAC- 666 (792)
Q Consensus 602 fY~~k~~gRkL~W~~~Lg~~~i~~~f~~~~~el~vs~~Q--------------lt~~eI~~~T~i~~~eL~r~L~sL~~- 666 (792)
||.++|+||+|+|+|+||+|+|+++|++|+|+|+||+|| +|++||+++|||++++|+|+|+||+|
T Consensus 163 fY~~~~~gRkL~W~~~lg~~~l~~~~~~~~~~l~vs~~Qa~ILllFn~~~~~~lt~~ei~~~t~i~~~~L~r~L~sL~~~ 242 (382)
T 3dpl_C 163 FYKKNHSGRKLHWHHLMSNGIITFKNEVGQYDLEVTTFQLAVLFAWNQRPREKISFENLKLATELPDAELRRTLWSLVAF 242 (382)
T ss_dssp HHHTTSSSEEEEECGGGCEEEEEEECSSCEEEEEEEHHHHHHHGGGTTCTTCCEEHHHHHHHHCCCHHHHHHHHHHHHCC
T ss_pred HHHhcCCCCEEEEecCcccEEEEEEeCCceEEEEEcHHHHHHHHHhccCCCCcCcHHHHHHHHCcCHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999 79999999999999999999999998
Q ss_pred C--CceeeecCCC---CCCCCCCCeEEEccCCCCC-----ceeEEeccccc--ccchhhhhhhhHHHHhhhhhhhhHHHH
Q 003835 667 G--KVRVLQKLPK---GRDVEDDDSFVFNEGFTAP-----LYRIKVNAIQM--KETVEENTSTTERVFQDRQYQVDAAIV 734 (792)
Q Consensus 667 ~--k~kiL~k~p~---~~~i~~~d~f~~N~~Ft~~-----~~riki~~i~~--ket~~e~~~t~e~v~~dR~~~i~AaIV 734 (792)
| |++||.++|+ +++++++|+|+||.+|+++ .+|+||+.+.. .++..++++++++|++||++.||||||
T Consensus 243 ~k~k~~iL~~~~~~~~~~~~~~~d~f~~N~~F~~~k~~k~~~r~ki~~~~~~q~~~~~e~~~~~~~v~edR~~~i~AaIV 322 (382)
T 3dpl_C 243 PKLKRQVLLYEPQVNSPKDFTEGTLFSVNQEFSLIKNAKVQKRGKINLIGRLQLTTERMREEENEGIVQLRILRTQEAII 322 (382)
T ss_dssp TTCSSCSEEESSCCSSGGGCCTTCEEEECTTCCEESSSSEESEEEEECCTTTTSCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhcceeeecCCccccCcCCCCCEEEEcCCCcCCcccccceeEEEecccccccccchhhhhhHHHHHHHhhheeeEEEe
Confidence 5 4689999986 4789999999999999972 37888876532 245667788999999999999999999
Q ss_pred HhhhcccccChHHHHHHHHHhc--CCCCChHHHHHHHHHhhhhcccccCCCCCCceeecC
Q 003835 735 RIMKTRKVLSHTLLITELFQQL--KFPIKPADLKKRIESLIDREYLERDKNNPQIYNYLA 792 (792)
Q Consensus 735 RIMK~rK~l~h~~Li~ev~~~l--rF~~~~~~iKk~IE~LIereYl~Rd~~d~~~Y~YlA 792 (792)
||||+||+|+|++|+.||++|+ +|+|++.+||+|||+|||||||+||++|+++|+|||
T Consensus 323 RIMK~rK~l~h~~Lv~ev~~ql~~rF~p~~~~IKk~Ie~LIereYleR~~~d~~~y~YlA 382 (382)
T 3dpl_C 323 QIMKMRKKISNAQLQTELVEILKNMFLPQKKMIKEQIEWLIEHKYIRRDESDINTFIYMA 382 (382)
T ss_dssp HHHTTSSEECHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHHHTTSEEEETTEEEEEEECC
T ss_pred hhhhccCcccHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhhhhccCCCCCCeEEEcC
Confidence 9999999999999999999999 699999999999999999999999999999999998
No 4
>4ap2_B Cullin-3, CUL-3; ubiquitination, E3 ligase, cell cycle; HET: EDO; 2.80A {Homo sapiens}
Probab=100.00 E-value=3.2e-76 Score=662.13 Aligned_cols=371 Identities=34% Similarity=0.609 Sum_probs=334.7
Q ss_pred CcceeeecCCCCCCCCCchHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHH-HHH
Q 003835 85 AKKLVIKLLKAKPTLPTNFEEDTWAKLKLAIKAIFLKQPTSCDLEKLYQAVNDLCLHKMGGNLYQRIEKECEEHIS-AAI 163 (792)
Q Consensus 85 ~~k~~ik~~~~~~~~~~~~~e~~W~~L~~AI~~I~~~~~~~~s~e~LY~~Vy~lC~~k~~e~LY~~l~~~~~~~l~-~~~ 163 (792)
+||++||||+ |++|++|++++|..|++||++|+.++++++|||+||++||++|++++|++||++|++.|++|+. .+.
T Consensus 13 ~~k~~i~~~~--~~~~~~~~~~~W~~L~~ai~~I~~~~~~~~s~eeLY~~vy~lc~~k~g~~LY~~l~~~~~~~l~~~v~ 90 (410)
T 4ap2_B 13 DTKMRIRAFP--MTMDEKYVNSIWDLLKNAIQEIQRKNNSGLSFEELYRNAYTMVLHKHGEKLYTGLREVVTEHLINKVR 90 (410)
T ss_dssp ----CCCCCC--CCCCHHHHHHHHHHHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTHH
T ss_pred CCeeeeeCCC--CCCChhHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHH
Confidence 7999999994 7899999999999999999999999999999999999999999999999999999999999999 455
Q ss_pred HhhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCcccHHHHHHHHHHHHhccccchHHHHHHHHHH
Q 003835 164 RSLVGQSPDLVVFLSLVERCWQDLCDQMLMIRGIALYLDRTYVKQTPNVRSLWDMGLQLFRKYLSSYSEVEHKTVTGLLR 243 (792)
Q Consensus 164 ~~l~~~~~d~~~~L~~~~~~W~~~~~~l~~i~~iF~YLDR~Yv~~~~~~~sI~dlgL~lFr~~v~~~~~l~~~l~~~iL~ 243 (792)
..+....+ +.||+.|.++|++|+.++.+|++||+||||+|+.+++ .++|+++||.+||++|+.++++++++++++|.
T Consensus 91 ~~l~~~~~--~~~L~~~~~~W~~~~~~~~~i~~if~YLDR~yv~~~~-~~~I~~lgL~lfr~~v~~~~~i~~~l~~~lL~ 167 (410)
T 4ap2_B 91 EDVLNSLN--NNFLQTLNQAWNDHQTAMVMIRDILMYMDRVYVQQNN-VENVYNLGLIIFRDQVVRYGCIRDHLRQTLLD 167 (410)
T ss_dssp HHHHTTTT--SSHHHHHHHHHHHHHHHHHHHHHHTHHHHHTHHHHTT-CCCHHHHHHHHHHHHTTTSSHHHHHHHHHHHH
T ss_pred HHHHhcCc--HHHHHHHHHHHHHHHHHHHhccHHHHHhhHHHHhcCC-CCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 54444333 3699999999999999999999999999999999986 89999999999999999877899999999999
Q ss_pred HHHHHhcCCcCChHHHHHHHHHHHhhhc-----cHHhhHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHHHH
Q 003835 244 MIERERLGEAVDRTLLNHLLKMFTALGI-----YSESFEKPFLECTSEFYAAEGMKYMQQSDVPDYLKHVEIRLHEEHER 318 (792)
Q Consensus 244 lI~~eR~g~~id~~llk~~i~ml~~L~v-----Y~~~FE~~fL~~T~~yY~~es~~~l~~~s~~eYL~~ve~~l~eE~~R 318 (792)
+|+++|.|+.||+.+|++++.||++||. |.+.||++||++|++||+.+|++|+++.++++||++|+.+|++|.+|
T Consensus 168 lI~~eR~Ge~id~~lik~vi~ml~~Lg~~~~~vY~~~FE~~fL~~T~~fY~~es~~~l~~~~~~~Yl~~ve~rL~eE~~R 247 (410)
T 4ap2_B 168 MIARERKGEVVDRGAIRNACQMLMILGLEGRSVYEEDFEAPFLEMSAEFFQMESQKFLAENSASVYIKKVEARINEEIER 247 (410)
T ss_dssp HHHHHHTTCCCCHHHHHHHHHHHHHTTSSSSHHHHHHTHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCCHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999985 99999999999999999999999999999999999999999999999
Q ss_pred hccccCcCcHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhccCCHHHHHHHHHhhccc-cchHHHHHHHHHHHHHhhcc
Q 003835 319 CLLYLDVSTRKPLIATAERQLLERHISAILD---KGFTMLMDGHRTEDLQRMYSLFSRV-NALESLRQALAMYIRRTGHG 394 (792)
Q Consensus 319 ~~~yL~~sT~~~L~~~l~~~LI~~~~~~ll~---~g~~~ll~~~~~~~L~~ly~L~~~~-~~l~~l~~~~~~yI~~~G~~ 394 (792)
|..||+++|.++|+++|+++||.+|++.|++ +||..||++++.++|++||+||+|+ +|++.|+.+|++||++.|.+
T Consensus 248 ~~~yL~~sT~~kL~~~~e~~LI~~h~~~ll~~e~~g~~~lL~~~~~~dL~~mY~L~~rv~~gl~~L~~~~~~~I~~~G~~ 327 (410)
T 4ap2_B 248 VMHCLDKSTEEPIVKVVERELISKHMKTIVEMENSGLVHMLKNGKTEDLGCMYKLFSRVPNGLKTMCECMSSYLREQGKA 327 (410)
T ss_dssp HHHTSCGGGHHHHHHHHHHHHTGGGHHHHHTCTTTSHHHHHHTTCHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhCCCHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999996 8999999999999999999999999 89999999999999999999
Q ss_pred cccCch---hhHHHHHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHHHHHhcCCCCchhHHHHHHHHHH
Q 003835 395 IVMDEE---KDKDMVSSLLEFKASLDTIWEQSFSKNEAFCNTIKDAFEYLINLRQNRPAELIAKFLDEKL 461 (792)
Q Consensus 395 iv~~~~---~~~~~V~~Ll~l~~~~~~ii~~~F~~~~~f~~~l~~af~~~iN~~~~~~~e~Laky~D~~L 461 (792)
+|.+.+ .+..||+.||++|++|+.+|.+||++|+.|.+++++||+.|||.++ +.||+||+|||..-
T Consensus 328 iv~~~~~~~~~~~~V~~LL~l~~k~~~iv~~~F~~d~~f~~al~~AF~~fiN~~~-~spElla~y~D~~~ 396 (410)
T 4ap2_B 328 LVSEEGEGKNPVDYRQGLDDLKSRFDRFLLESFNNDRLFKQTIAGDFEYFLNLNS-RSPEYLAENLYFQS 396 (410)
T ss_dssp HHHC------CHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHC----------------
T ss_pred HHhccccccChHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCC-CCHHHHHHHccCcc
Confidence 998764 4569999999999999999999999999999999999999999998 56699999999864
No 5
>4a64_A Cullin-4B, CUL4B, CUL-4B; cell cycle; 2.57A {Homo sapiens}
Probab=100.00 E-value=6.3e-73 Score=624.86 Aligned_cols=351 Identities=50% Similarity=0.821 Sum_probs=335.5
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHhhhcCCCcHHH
Q 003835 96 KPTLPTNFEEDTWAKLKLAIKAIFLKQPTSCDLEKLYQAVNDLCLHKMGGNLYQRIEKECEEHISAAIRSLVGQSPDLVV 175 (792)
Q Consensus 96 ~~~~~~~~~e~~W~~L~~AI~~I~~~~~~~~s~e~LY~~Vy~lC~~k~~e~LY~~l~~~~~~~l~~~~~~l~~~~~d~~~ 175 (792)
+|++|++|++++|..|++||++|+.++++++|||+||++||++|++++|++||++|++.|+.|+...+.++.....+++.
T Consensus 2 ~~~~~~~~~~~~W~~L~~ai~~I~~~~~~~~s~eeLY~~vy~lc~~~~g~~LY~~l~~~~~~~l~~~~~~~~~~~~~~~~ 81 (354)
T 4a64_A 2 MPKLPENYTDETWQKLKEAVEAIQNSTSIKYNLEELYQAVENLCSYKISANLYKQLRQICEDHIKAQIHQFREDSLDSVL 81 (354)
T ss_dssp CCCCCSSSTTHHHHHHHHHHHHHHTTCCCCSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHTTGGGGCCSCCHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHccccHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999988777665555578
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCcccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHhcCCcCC
Q 003835 176 FLSLVERCWQDLCDQMLMIRGIALYLDRTYVKQTPNVRSLWDMGLQLFRKYLSSYSEVEHKTVTGLLRMIERERLGEAVD 255 (792)
Q Consensus 176 ~L~~~~~~W~~~~~~l~~i~~iF~YLDR~Yv~~~~~~~sI~dlgL~lFr~~v~~~~~l~~~l~~~iL~lI~~eR~g~~id 255 (792)
||+.+.++|++|+.++.+|++||+||||+|+.++++.++|+++||.+||++|+.++++++++++++|.+|+++|.|+.||
T Consensus 82 ~L~~~~~~W~~~~~~~~~i~~if~YLdR~yv~~~~~~~~I~~lgL~lfr~~v~~~~~i~~~l~~~ll~lI~~eR~Ge~id 161 (354)
T 4a64_A 82 FLKKIDRCWQNHCRQMIMIRSIFLFLDRTYVLQNSMLPSIWDMGLELFRAHIISDQKVQNKTIDGILLLIERERNGEAID 161 (354)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHHCSTTTSCCSCCHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHhcCCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 99999999999999999999999999999999987679999999999999999877899999999999999999999999
Q ss_pred hHHHHHHHHHHHhhhccHHhhHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHHHHhccccCcCcHHHHHHHH
Q 003835 256 RTLLNHLLKMFTALGIYSESFEKPFLECTSEFYAAEGMKYMQQSDVPDYLKHVEIRLHEEHERCLLYLDVSTRKPLIATA 335 (792)
Q Consensus 256 ~~llk~~i~ml~~L~vY~~~FE~~fL~~T~~yY~~es~~~l~~~s~~eYL~~ve~~l~eE~~R~~~yL~~sT~~~L~~~l 335 (792)
+.+|++++.||.+|++|.+.||++||++|++||+.+|++|+++.++++||++|+.+|++|.+||..||+++|.++|+++|
T Consensus 162 ~~lik~~i~ml~~L~vY~~~FE~~fL~~t~~fY~~e~~~~l~~~~~~~Yl~~ve~rl~eE~~R~~~yL~~~T~~~l~~~~ 241 (354)
T 4a64_A 162 RSLLRSLLSMLSDLQIYQDSFEQRFLEETNRLYAAEGQKLMQEREVPEYLHHVNKRLEEEADRLITYLDQTTQKSLIATV 241 (354)
T ss_dssp HHHHHHHHHHHHHTTCHHHHTHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHhhccc-cchHHHHHHHHHHHHHhhcccccCchhhHHHHHHHHHHHH
Q 003835 336 ERQLLERHISAILDKGFTMLMDGHRTEDLQRMYSLFSRV-NALESLRQALAMYIRRTGHGIVMDEEKDKDMVSSLLEFKA 414 (792)
Q Consensus 336 ~~~LI~~~~~~ll~~g~~~ll~~~~~~~L~~ly~L~~~~-~~l~~l~~~~~~yI~~~G~~iv~~~~~~~~~V~~Ll~l~~ 414 (792)
+++||.+|++.|+++||..||++++.++|++||+||+|+ +|++.|+.+|++||++.|.++|.+.++++.||+.||++|+
T Consensus 242 e~~LI~~h~~~ll~~~~~~lL~~~~~~dL~~mY~L~~rv~~gl~~l~~~~~~~I~~~G~~iv~~~~~~~~~V~~LL~l~~ 321 (354)
T 4a64_A 242 EKQLLGEHLTAILQKGLNNLLDENRIQDLSLLYQLFSRVRGGVQVLLQQWIEYIKAFGSTIVINPEKDKTMRQELDDFKD 321 (354)
T ss_dssp HHHHTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHSCCSSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999 8999999999999999999999988888899999999999
Q ss_pred HHHHHHHHhcCCChhhhHHHHHHHHHHHhcCC
Q 003835 415 SLDTIWEQSFSKNEAFCNTIKDAFEYLINLRQ 446 (792)
Q Consensus 415 ~~~~ii~~~F~~~~~f~~~l~~af~~~iN~~~ 446 (792)
+|+.+|.+||++|+.|.+++++||+.|||.++
T Consensus 322 k~~~iv~~~F~~d~~f~~al~~af~~fiN~~~ 353 (354)
T 4a64_A 322 KVDHIIDICFLKNEKFINAMKEAFETFINKRP 353 (354)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999875
No 6
>4eoz_B Cullin-3, CUL-3; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} PDB: 4apf_B
Probab=100.00 E-value=5.1e-70 Score=603.88 Aligned_cols=346 Identities=34% Similarity=0.634 Sum_probs=279.5
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHH-HHHhhhcCCCcHHH
Q 003835 97 PTLPTNFEEDTWAKLKLAIKAIFLKQPTSCDLEKLYQAVNDLCLHKMGGNLYQRIEKECEEHISA-AIRSLVGQSPDLVV 175 (792)
Q Consensus 97 ~~~~~~~~e~~W~~L~~AI~~I~~~~~~~~s~e~LY~~Vy~lC~~k~~e~LY~~l~~~~~~~l~~-~~~~l~~~~~d~~~ 175 (792)
|++|++|++++|..|++||++|+.++++++|||+||++||++|++++|++||++|++.|++|+.. +...+....+ +.
T Consensus 6 ~~~~~~~~~~~W~~L~~ai~~I~~~~~~~~s~e~LY~~vy~lc~~k~g~~LY~~l~~~~~~~l~~~v~~~~~~~~~--~~ 83 (364)
T 4eoz_B 6 MTMDEKYVNSIWDLLKNAIQEIQRKNNSGLSFEELYRNAYTMVLHKHGEKLYTGLREVVTEHLINKVREDVLNSLN--NN 83 (364)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHTTCGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTHHHHHHTTTT--SS
T ss_pred CCCChhhHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHHHHHHHHHhcCc--HH
Confidence 66888999999999999999999999999999999999999999999999999999999999994 5444444333 36
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCcccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHhcCCcCC
Q 003835 176 FLSLVERCWQDLCDQMLMIRGIALYLDRTYVKQTPNVRSLWDMGLQLFRKYLSSYSEVEHKTVTGLLRMIERERLGEAVD 255 (792)
Q Consensus 176 ~L~~~~~~W~~~~~~l~~i~~iF~YLDR~Yv~~~~~~~sI~dlgL~lFr~~v~~~~~l~~~l~~~iL~lI~~eR~g~~id 255 (792)
||+.+.++|++|+.++.+|++||+||||+|+.+++ .++|+++||.+||++|+.++++++++++++|.+|+++|.|+.||
T Consensus 84 ~L~~~~~~W~~~~~~~~~i~~if~YLdR~yv~~~~-~~~I~~lgl~~fr~~v~~~~~i~~~l~~~ll~lI~~eR~Ge~id 162 (364)
T 4eoz_B 84 FLQTLNQAWNDHQTAMVMIRDILMYMDRVYVQQNN-VENVYNLGLIIFRDQVVRYGCIRDHLRQTLLDMIARERKGEVVD 162 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTGGGT-CCCHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhcCC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhCCCCCC
Confidence 99999999999999999999999999999999986 89999999999999999877899999999999999999999999
Q ss_pred hHHHHHHHHHHHhhhc-----cHHhhHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHHHHhccccCcCcHHH
Q 003835 256 RTLLNHLLKMFTALGI-----YSESFEKPFLECTSEFYAAEGMKYMQQSDVPDYLKHVEIRLHEEHERCLLYLDVSTRKP 330 (792)
Q Consensus 256 ~~llk~~i~ml~~L~v-----Y~~~FE~~fL~~T~~yY~~es~~~l~~~s~~eYL~~ve~~l~eE~~R~~~yL~~sT~~~ 330 (792)
+.+|++++.||++||. |.+.||++||++|++||+.+|++|+++.++++||++|+.+|++|.+||..||+++|.++
T Consensus 163 ~~lik~~i~ml~~L~~~~~~~Y~~~FE~~fL~~t~~fY~~es~~~l~~~~~~~Yl~~ve~rl~eE~~R~~~yL~~~T~~~ 242 (364)
T 4eoz_B 163 RGAIRNACQMLMILGLEGRSVYEEDFEAPFLEMSAEFFQMESQKFLAENSASVYIKKVEARINEEIERVMHCLDKSTEEP 242 (364)
T ss_dssp HHHHHHHHHHHHHTTSSSSHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHSCGGGHHH
T ss_pred HHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHcCCcccHHH
Confidence 9999999999999985 99999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHhhccCCHHHHHHHHHhhccc-cchHHHHHHHHHHHHHhhcccccCch---hhH
Q 003835 331 LIATAERQLLERHISAILD---KGFTMLMDGHRTEDLQRMYSLFSRV-NALESLRQALAMYIRRTGHGIVMDEE---KDK 403 (792)
Q Consensus 331 L~~~l~~~LI~~~~~~ll~---~g~~~ll~~~~~~~L~~ly~L~~~~-~~l~~l~~~~~~yI~~~G~~iv~~~~---~~~ 403 (792)
|+++|+++||.+|++.|++ +||..||++++.++|++||+||+|+ +|++.|+.+|++||++.|.++|.+.+ .+.
T Consensus 243 l~~~~e~~LI~~h~~~ll~~e~~g~~~lL~~~~~~dL~~mY~L~~rv~~gl~~l~~~~~~~I~~~G~~iv~~~~~~~~~~ 322 (364)
T 4eoz_B 243 IVKVVERELISKHMKTIVEMENSGLVHMLKNGKTEDLGCMYKLFSRVPNGLKTMCECMSSYLREQGKALVSEEGEGKNPV 322 (364)
T ss_dssp HHHHHHHHHTTTTHHHHHTCTTTSHHHHTTTTCHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHHHHHHHHHHHHhhcchhHHHHHhCCCHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCccccCChH
Confidence 9999999999999999996 8999999999999999999999999 89999999999999999999998764 356
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHHHHHhcC
Q 003835 404 DMVSSLLEFKASLDTIWEQSFSKNEAFCNTIKDAFEYLINLR 445 (792)
Q Consensus 404 ~~V~~Ll~l~~~~~~ii~~~F~~~~~f~~~l~~af~~~iN~~ 445 (792)
.||++||++|++|+.+|.+||++|+.|.+++++||+.|||.+
T Consensus 323 ~~V~~LL~l~~k~~~iv~~~F~~d~~f~~al~~af~~fiN~n 364 (364)
T 4eoz_B 323 DYRQGLDDLKSRFDRFLLESFNNDRLFKQTIAGDFEYFLNLN 364 (364)
T ss_dssp ------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcCc
Confidence 999999999999999999999999999999999999999964
No 7
>2wzk_A Cullin-5, CUL-5; UBL conjugation pathway, HIV, phosphoprotein, isopeptide bond, protein binding; 2.05A {Mus musculus}
Probab=100.00 E-value=8.6e-66 Score=574.98 Aligned_cols=342 Identities=21% Similarity=0.369 Sum_probs=317.9
Q ss_pred CchHHHHHHHHHHHHHHHHhcCC-CCccHHHHHHHHHhhhcc--CchhHHHHHHHHHHHHHHHHHHHhhhcCCCcHHHHH
Q 003835 101 TNFEEDTWAKLKLAIKAIFLKQP-TSCDLEKLYQAVNDLCLH--KMGGNLYQRIEKECEEHISAAIRSLVGQSPDLVVFL 177 (792)
Q Consensus 101 ~~~~e~~W~~L~~AI~~I~~~~~-~~~s~e~LY~~Vy~lC~~--k~~e~LY~~l~~~~~~~l~~~~~~l~~~~~d~~~~L 177 (792)
+.+++++|..|++||++|+.+++ +..+||+||++||++|++ ++|++||++|++.|+.|+..++.++.... +++.||
T Consensus 12 ~~~~e~~W~~L~~ai~~I~~~~~~~~~s~e~LY~~vy~lc~~~~~~~~~LY~~l~~~~~~~l~~~~~~~~~~~-~~e~~L 90 (391)
T 2wzk_A 12 SLQFEDKWDFMHPIVLKLLRQESVTKQQWFDLFSDVHAVCLWDDKGSSKIHQALKEDILEFIKQAQARVLSHQ-DDTALL 90 (391)
T ss_dssp CCSHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHTCC-SHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHhcc-CHHHHH
Confidence 35569999999999999999744 456999999999999997 68999999999999999999888876544 346899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCC-------CcccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHhc
Q 003835 178 SLVERCWQDLCDQMLMIRGIALYLDRTYVKQTP-------NVRSLWDMGLQLFRKYLSSYSEVEHKTVTGLLRMIERERL 250 (792)
Q Consensus 178 ~~~~~~W~~~~~~l~~i~~iF~YLDR~Yv~~~~-------~~~sI~dlgL~lFr~~v~~~~~l~~~l~~~iL~lI~~eR~ 250 (792)
+.|..+|.+|+.++.+|++||+||||+||.+++ +.++|+++||.+||++||. ++++++++++|.+|+++|.
T Consensus 91 ~~~~~~W~~~~~~~~~i~~if~YLdR~yv~~~~~~~~~~~~~~~I~~lgL~~fr~~v~~--~i~~~l~~~ll~lI~~eR~ 168 (391)
T 2wzk_A 91 KAYIVEWRKFFTQCDILPKPFCQLEVTLLGKQSSNKKSNMEDSIVRKLMLDTWNESIFS--NIKNRLQDSAMKLVHAERL 168 (391)
T ss_dssp HHHHHHHHHHHHHTTTTTGGGHHHHTTSTTC--------CTTCHHHHHHHHHHHHHTHH--HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCCCcHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999997642 3579999999999999996 7999999999999999999
Q ss_pred CCcCChHHHHHHHHHHHhh--------hccHHhhHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHHHHhccc
Q 003835 251 GEAVDRTLLNHLLKMFTAL--------GIYSESFEKPFLECTSEFYAAEGMKYMQQSDVPDYLKHVEIRLHEEHERCLLY 322 (792)
Q Consensus 251 g~~id~~llk~~i~ml~~L--------~vY~~~FE~~fL~~T~~yY~~es~~~l~~~s~~eYL~~ve~~l~eE~~R~~~y 322 (792)
|+.||+.+|++++.||+.| ++|.+.||++||++|++||+.+|++|+++.++++||++|+.+|++|.+||..|
T Consensus 169 Ge~id~~llk~vi~~l~~L~~~~~~~l~vY~~~FE~~fL~~T~~fY~~es~~~l~~~~~~~Yl~~ve~rL~eE~~R~~~y 248 (391)
T 2wzk_A 169 GEAFDSQLVIGVRESYVNLCSNPEDKLQIYRDNFEKAYLDSTERFYRTQAPSYLQQNGVQNYMKYADAKLKEEEKRALRY 248 (391)
T ss_dssp TCCCCTHHHHHHHHHHHHSCCCSSCTTHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHccCccccHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999974 58999999999999999999999999999999999999999999999999999
Q ss_pred cC----cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHhhccc-cchHHHHHHHHHHHHHhhccccc
Q 003835 323 LD----VSTRKPLIATAERQLLERHISAILDKGFTMLMDGHRTEDLQRMYSLFSRV-NALESLRQALAMYIRRTGHGIVM 397 (792)
Q Consensus 323 L~----~sT~~~L~~~l~~~LI~~~~~~ll~~g~~~ll~~~~~~~L~~ly~L~~~~-~~l~~l~~~~~~yI~~~G~~iv~ 397 (792)
|+ ++|.++|+++|+++||.+|++.|++ ||..||++++.+||++||+||+|+ +|++.|+..|++||++.|.+++.
T Consensus 249 L~~~~~~sT~~kl~~~~e~~LI~~h~~~ll~-~~~~lL~~~~~~dL~~mY~L~~rv~~gl~~l~~~~~~~I~~~G~~~v~ 327 (391)
T 2wzk_A 249 LETRRECNSVEALMECCVNALVTSFKETILA-ECQGMIKRNETEKLHLMFSLMDKVPNGIEPMLKDLEEHIISAGLADMV 327 (391)
T ss_dssp SCCTTCCSHHHHHHHHHHHHHTGGGHHHHHT-THHHHHHTTCHHHHHHHHHHHTTSTTCSHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCcCCcchHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHcCCHHHHHHHHHHHccCcccHHHHHHHHHHHHHHHHHHHHH
Confidence 99 9999999999999999999999987 799999999999999999999999 99999999999999999999874
Q ss_pred C-----chhhHHHHHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHHHHHhcCC
Q 003835 398 D-----EEKDKDMVSSLLEFKASLDTIWEQSFSKNEAFCNTIKDAFEYLINLRQ 446 (792)
Q Consensus 398 ~-----~~~~~~~V~~Ll~l~~~~~~ii~~~F~~~~~f~~~l~~af~~~iN~~~ 446 (792)
+ ...+..||+.||++|++|+.+|.+||++|+.|.+++++||+.|||.++
T Consensus 328 ~~~~~~~~~~~~~V~~LL~l~~k~~~lv~~~F~~d~~f~~al~~af~~fiN~~~ 381 (391)
T 2wzk_A 328 AAAETITTDSEKYREQLDTLFNRFSKLVKEAFQDDPRFLTARDKAYKAVVNDAT 381 (391)
T ss_dssp HHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hccccccCCHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCch
Confidence 3 234678999999999999999999999999999999999999999764
No 8
>2do7_A Cullin-4B, CUL-4B; helix-turn-helix motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.97 E-value=3.1e-32 Score=241.67 Aligned_cols=93 Identities=75% Similarity=1.124 Sum_probs=90.9
Q ss_pred EEecccccccchhhhhhhhHHHHhhhhhhhhHHHHHhhhcccccChHHHHHHHHHhcCCCCChHHHHHHHHHhhhhcccc
Q 003835 700 IKVNAIQMKETVEENTSTTERVFQDRQYQVDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLE 779 (792)
Q Consensus 700 iki~~i~~ket~~e~~~t~e~v~~dR~~~i~AaIVRIMK~rK~l~h~~Li~ev~~~lrF~~~~~~iKk~IE~LIereYl~ 779 (792)
||||+++.+|+.+|+++|++.|++||++.||||||||||+||+|+|++|+.||++||+|+|++.+||+|||+|||||||+
T Consensus 3 ~ki~~i~~ke~~~e~~~t~~~v~~dR~~~iqAaIVRIMK~rK~l~h~~Lv~eV~~ql~F~p~~~~IKk~IE~LIereYle 82 (101)
T 2do7_A 3 SGSSGIQMKETVEEQASTTERVFQDRQYQIDAAIVRIMKMRKTLSHNLLVSEVYNQLKFPVKPADLKKRIESLIDRDYME 82 (101)
T ss_dssp CSSCSCCCCCCCCCCSSCCSHHHHHHHHHHHHHHHHHHHHSSEEEHHHHHHHHHHHCSSCCCHHHHHHHHHHHHHTTSEE
T ss_pred eeecccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhhhHHh
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCceeecC
Q 003835 780 RDKNNPQIYNYLA 792 (792)
Q Consensus 780 Rd~~d~~~Y~YlA 792 (792)
||++|++.|+|+|
T Consensus 83 R~~~d~~~y~YlA 95 (101)
T 2do7_A 83 RDKENPNQYNYIA 95 (101)
T ss_dssp ECSSCTTEEEECC
T ss_pred cCCCCCCeEEEec
Confidence 9999999999998
No 9
>1iuy_A Cullin-3 homologue; winged helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.34
Probab=99.96 E-value=2.7e-30 Score=226.08 Aligned_cols=86 Identities=45% Similarity=0.728 Sum_probs=82.0
Q ss_pred cccchhhhhhhhHHHHhhhhhhhhHHHHHhhhcccccChHHHHHHHHHhc--CCCCChHHHHHHHHHhhhhcccccCCCC
Q 003835 707 MKETVEENTSTTERVFQDRQYQVDAAIVRIMKTRKVLSHTLLITELFQQL--KFPIKPADLKKRIESLIDREYLERDKNN 784 (792)
Q Consensus 707 ~ket~~e~~~t~e~v~~dR~~~i~AaIVRIMK~rK~l~h~~Li~ev~~~l--rF~~~~~~iKk~IE~LIereYl~Rd~~d 784 (792)
.+|+++|+++|++.|++||++.||||||||||+||+|+|++|+.||++|| +|+|++.+||+|||+|||||||+||++|
T Consensus 5 ~~e~~~e~~~t~~~v~~dR~~~i~AaIVRIMK~rK~l~h~~Lv~ev~~ql~~rF~p~~~~IKk~IE~LIereYleR~~~d 84 (92)
T 1iuy_A 5 QGESDPERKETRQKVDDDRKHEIEAAIVRIMKSRKKMQHNVLVAEVTQQLKARFLPSPVVIKKRIEGLIEREYLARTPED 84 (92)
T ss_dssp CCCCCCCCCCCCSCSCCCTTTHHHHHHHHHHHHHCEEEHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHTTSEEECSSC
T ss_pred ccccHHHHHHHHHHHHHHHHHHeeeeeeehhhccccccHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhhhhhhhcCCCC
Confidence 46788889999999999999999999999999999999999999999999 5999999999999999999999999999
Q ss_pred CCceeecC
Q 003835 785 PQIYNYLA 792 (792)
Q Consensus 785 ~~~Y~YlA 792 (792)
++.|+|+|
T Consensus 85 ~~~y~Y~A 92 (92)
T 1iuy_A 85 RKVYTYVA 92 (92)
T ss_dssp SSEEEEC-
T ss_pred CCeeEecC
Confidence 99999998
No 10
>3o2p_E Cell division control protein 53; ligase, cell cycle; 2.23A {Saccharomyces cerevisiae} PDB: 3o6b_B
Probab=99.96 E-value=1.5e-29 Score=218.98 Aligned_cols=80 Identities=38% Similarity=0.611 Sum_probs=77.6
Q ss_pred hhhhhhhHHHHhhhhhhhhHHHHHhhhcccccChHHHHHHHHHhc--CCCCChHHHHHHHHHhhhhcccccCCCCCCcee
Q 003835 712 EENTSTTERVFQDRQYQVDAAIVRIMKTRKVLSHTLLITELFQQL--KFPIKPADLKKRIESLIDREYLERDKNNPQIYN 789 (792)
Q Consensus 712 ~e~~~t~e~v~~dR~~~i~AaIVRIMK~rK~l~h~~Li~ev~~~l--rF~~~~~~iKk~IE~LIereYl~Rd~~d~~~Y~ 789 (792)
+|+++|++.|++||++.||||||||||+||+|+|++|+.||++|+ +|+|++.+||+|||+|||||||+||++| +.|+
T Consensus 7 ~e~~~t~~~v~~dR~~~iqAaIVRIMK~rK~l~h~~Lv~ev~~ql~~rF~p~~~~IKk~IE~LIekeYleR~~~~-~~y~ 85 (88)
T 3o2p_E 7 TEDERIEKELNTERQIFLEACIVRIMKAKRNLPHTTLVNECIAQSHQRFNAKVSMVKRAIDSLIQKGYLQRGDDG-ESYA 85 (88)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSEEEHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEECTTS-SEEE
T ss_pred chHHHHHHHHHHHhhhhhheeeehhhcccccccHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhhHHhcCCCC-CeEE
Confidence 577889999999999999999999999999999999999999999 6999999999999999999999999999 9999
Q ss_pred ecC
Q 003835 790 YLA 792 (792)
Q Consensus 790 YlA 792 (792)
|+|
T Consensus 86 YlA 88 (88)
T 3o2p_E 86 YLA 88 (88)
T ss_dssp ECC
T ss_pred eeC
Confidence 998
No 11
>3tdu_C Cullin-1, CUL-1; E2:E3, ligase-protein binding complex; 1.50A {Homo sapiens} PDB: 3tdz_C
Probab=99.95 E-value=3.4e-29 Score=211.82 Aligned_cols=73 Identities=47% Similarity=0.718 Sum_probs=71.4
Q ss_pred HHHhhhhhhhhHHHHHhhhcccccChHHHHHHHHHhc--CCCCChHHHHHHHHHhhhhcccccCCCCCCceeecC
Q 003835 720 RVFQDRQYQVDAAIVRIMKTRKVLSHTLLITELFQQL--KFPIKPADLKKRIESLIDREYLERDKNNPQIYNYLA 792 (792)
Q Consensus 720 ~v~~dR~~~i~AaIVRIMK~rK~l~h~~Li~ev~~~l--rF~~~~~~iKk~IE~LIereYl~Rd~~d~~~Y~YlA 792 (792)
.|++||++.||||||||||+||+|+|++|+.||++|+ +|+|++++||+|||+|||||||+||++|+++|+|+|
T Consensus 3 ~v~~dR~~~i~AaIVRIMK~rK~l~h~~Lv~ev~~ql~~rF~p~~~~IKk~IE~LIereYl~R~~~~~~~y~Y~A 77 (77)
T 3tdu_C 3 NIEEDRKLLIQAAIVRIMKMRKVLKHQQLLGEVLTQLSSRFKPRVPVIKKCIDILIEKEYLERVDGEKDTYSYLA 77 (77)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHSEEEHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEEETTEEEEEEECC
T ss_pred chhhhhhheEeeEEeeeecccceeeHHHHHHHHHHHHhCcCCCCHHHHHHHHHHHHhhhHhhcCCCCCceEEEeC
Confidence 5889999999999999999999999999999999999 699999999999999999999999999999999998
No 12
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=82.15 E-value=1.7 Score=35.62 Aligned_cols=56 Identities=18% Similarity=0.285 Sum_probs=49.8
Q ss_pred HHHHHhhhcccccChHHHHHHHHHhcCCCCChHHHHHHHHHhhhhcccccCCCCCCceeecC
Q 003835 731 AAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQIYNYLA 792 (792)
Q Consensus 731 AaIVRIMK~rK~l~h~~Li~ev~~~lrF~~~~~~iKk~IE~LIereYl~Rd~~d~~~Y~YlA 792 (792)
...|...|.+|...-.+|-.+ |..+.+++-.||+.|.+.+=|.=-=+|+.-|+||+
T Consensus 10 ~~Fi~yIk~~Kvv~LedLA~~------F~l~t~~~i~RI~~Le~~g~ltGViDDRGKfIyIs 65 (72)
T 1wi9_A 10 TEFINYIKKSKVVLLEDLAFQ------MGLRTQDAINRIQDLLTEGTLTGVIDDRGKFIYIT 65 (72)
T ss_dssp HHHHHHHHHCSEECHHHHHHH------HCSCHHHHHHHHHHHHHHSSSCEEECTTCCEEECC
T ss_pred HHHHHHHHHcCeeeHHHHHHH------hCCChHHHHHHHHHHHHCCCeEEEEeCCCCEEEec
Confidence 456788899999999888776 99999999999999999999998888899999984
No 13
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=75.57 E-value=2.9 Score=34.56 Aligned_cols=60 Identities=15% Similarity=0.333 Sum_probs=44.9
Q ss_pred hhHHHHHhhhcccccChHHHHHHHHHhcCCCCChHHHHHHHHHhhhhcccccCCCCCCceeec
Q 003835 729 VDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQIYNYL 791 (792)
Q Consensus 729 i~AaIVRIMK~rK~l~h~~Li~ev~~~lrF~~~~~~iKk~IE~LIereYl~Rd~~d~~~Y~Yl 791 (792)
.+..|.+++-....++..+|...+-.. -.+++..+-..++.|.++|||+|..+++ .|.|-
T Consensus 10 ~e~~vL~~L~~~~~~t~~ei~~~l~~~--~~~s~~Tv~~~l~rL~~kGlv~r~~~gr-~~~y~ 69 (82)
T 1p6r_A 10 AELEVMKVIWKHSSINTNEVIKELSKT--STWSPKTIQTMLLRLIKKGALNHHKEGR-VFVYT 69 (82)
T ss_dssp HHHHHHHHHHTSSSEEHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTSEEEEEETT-EEEEE
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHhhc--CCccHHHHHHHHHHHHHCCCeEEEecCC-EEEEE
Confidence 345566666667778888887776432 3468899999999999999999987544 56664
No 14
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=74.41 E-value=3.7 Score=34.22 Aligned_cols=44 Identities=7% Similarity=0.051 Sum_probs=39.8
Q ss_pred HHHHhhhcccccChHHHHHHHHHhcCCCCChHHHHHHHHHhhhhcccccC
Q 003835 732 AIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERD 781 (792)
Q Consensus 732 aIVRIMK~rK~l~h~~Li~ev~~~lrF~~~~~~iKk~IE~LIereYl~Rd 781 (792)
.|...++.++.++-++|..+ |.+++..|.+-++.|.++++|+|.
T Consensus 6 ~Il~~L~~~g~vsv~eLa~~------l~VS~~TIRrdL~~Le~~G~l~R~ 49 (78)
T 1xn7_A 6 QVRDLLALRGRMEAAQISQT------LNTPQPMINAMLQQLESMGKAVRI 49 (78)
T ss_dssp HHHHHHHHSCSBCHHHHHHH------TTCCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHcCCCcHHHHHHH------HCcCHHHHHHHHHHHHHCCCEEEe
Confidence 57788889999998887775 999999999999999999999997
No 15
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=73.01 E-value=1.2 Score=38.89 Aligned_cols=61 Identities=15% Similarity=0.261 Sum_probs=43.0
Q ss_pred hhHHHHHhhhcccccChHHHHHHHHHhcCCCCChHHHHHHHHHhhhhcccccCCCCCCceeecC
Q 003835 729 VDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQIYNYLA 792 (792)
Q Consensus 729 i~AaIVRIMK~rK~l~h~~Li~ev~~~lrF~~~~~~iKk~IE~LIereYl~Rd~~d~~~Y~YlA 792 (792)
-|..|.+++-....++-.+|...+-. .-.+++..|.+.|+.|.++|||+|..+. ..|.|-|
T Consensus 36 ~e~~VL~~L~~~~~~t~~eL~~~l~~--~~~~s~sTVt~~L~rLe~KGlV~R~~~g-R~~~Y~p 96 (99)
T 2k4b_A 36 AELIVMRVIWSLGEARVDEIYAQIPQ--ELEWSLATVKTLLGRLVKKEMLSTEKEG-RKFVYRP 96 (99)
T ss_dssp SCSHHHHHHHHHSCEEHHHHHHTCCG--GGCCCHHHHHHHHHHHHHTTSCEEEEET-TEEEEEC
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHhc--ccCCCHhhHHHHHHHHHHCCCEEEEeCC-CEEEEEE
Confidence 45556666665666776665554322 1346889999999999999999998654 4688854
No 16
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=71.08 E-value=3.4 Score=34.36 Aligned_cols=39 Identities=36% Similarity=0.536 Sum_probs=34.5
Q ss_pred ccHHHHHHHhCCCHHHHHHHHHHhhcCCceeeecCCCCCCC
Q 003835 641 LSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLPKGRDV 681 (792)
Q Consensus 641 lt~~eI~~~T~i~~~eL~r~L~sL~~~k~kiL~k~p~~~~i 681 (792)
.|+.||++.+|++...+++.|..|. +-..|.+.|.++.+
T Consensus 25 psv~EIa~~lgvS~~TVrr~L~~Le--~kG~I~R~~ggr~~ 63 (77)
T 2jt1_A 25 VKTRDIADAAGLSIYQVRLYLEQLH--DVGVLEKVNAGKGV 63 (77)
T ss_dssp EEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEESCSSSS
T ss_pred cCHHHHHHHHCCCHHHHHHHHHHHH--HCCcEEecCCCCCc
Confidence 5899999999999999999999999 77788888876655
No 17
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=70.19 E-value=4.4 Score=34.54 Aligned_cols=45 Identities=7% Similarity=0.054 Sum_probs=39.8
Q ss_pred HHHHhhhcccccChHHHHHHHHHhcCCCCChHHHHHHHHHhhhhcccccCC
Q 003835 732 AIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDK 782 (792)
Q Consensus 732 aIVRIMK~rK~l~h~~Li~ev~~~lrF~~~~~~iKk~IE~LIereYl~Rd~ 782 (792)
.|...++.++.++-++|..+ |.+++..|.+-|+.|.++++|+|..
T Consensus 6 ~Il~~L~~~g~vsv~eLA~~------l~VS~~TIRrDL~~Le~~G~l~R~~ 50 (87)
T 2k02_A 6 EVRDMLALQGRMEAKQLSAR------LQTPQPLIDAMLERMEAMGKVVRIS 50 (87)
T ss_dssp HHHHHHHHSCSEEHHHHHHH------TTCCHHHHHHHHHHHHTTCCSEEEE
T ss_pred HHHHHHHHcCCCcHHHHHHH------HCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 57778888899998887765 9999999999999999999999963
No 18
>2xub_A DNA-directed RNA polymerase III subunit RPC3; transcription, winged helix; 2.80A {Homo sapiens} PDB: 2xv4_S
Probab=64.93 E-value=4 Score=46.61 Aligned_cols=123 Identities=12% Similarity=0.137 Sum_probs=81.5
Q ss_pred ccHHHHHHHhCCCHHHHHHHHHHhhcCCceeeecCCCCCCCCCCCeEEEccCCCCCceeEEecccccccchhhhhhhhHH
Q 003835 641 LSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLPKGRDVEDDDSFVFNEGFTAPLYRIKVNAIQMKETVEENTSTTER 720 (792)
Q Consensus 641 lt~~eI~~~T~i~~~eL~r~L~sL~~~k~kiL~k~p~~~~i~~~d~f~~N~~Ft~~~~riki~~i~~ket~~e~~~t~e~ 720 (792)
+|+.+|...|+++...++..|..|. +.+++.-.+.+. ....|.+|.+ .-..+++.+-+ - .
T Consensus 34 ltL~~I~~~t~L~~~~Vk~~L~vLI--Qh~lV~~~~~~~---~~~~Y~~~~~--~il~~lR~pk~------------l-~ 93 (534)
T 2xub_A 34 QPLRVIAHDTGTSLDQVKKALCVLV--QHNLVSYQVHKR---GVVEYEAQCS--RVLRMLRYPRY------------I-Y 93 (534)
T ss_dssp EEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEEEETT---TEEEEEECHH--HHHGGGGHHHH------------H-H
T ss_pred cCHHHHHHHhCCCHHHHHHHHHHHH--hcCCeeEEeCCC---CcEEEEEChh--hHHHHHhhHHH------------H-H
Confidence 8999999999999999999999999 777765433211 1123444421 11112222111 0 1
Q ss_pred HHhhhhhhhhHHHHHhhhcccccChHHHHHHHHHhcC------CCCChHHHHHHHHHhhhhcccccCCC
Q 003835 721 VFQDRQYQVDAAIVRIMKTRKVLSHTLLITELFQQLK------FPIKPADLKKRIESLIDREYLERDKN 783 (792)
Q Consensus 721 v~~dR~~~i~AaIVRIMK~rK~l~h~~Li~ev~~~lr------F~~~~~~iKk~IE~LIereYl~Rd~~ 783 (792)
+.+.+--..-|.||--.=....++-.+|+..+...+. =.+++..++..+..|++.+||.|.+.
T Consensus 94 ~i~~~~G~~a~~I~~~ll~~G~~t~~~ll~~~~~~~~~~~~~~~~~~~~~l~~~f~~Lv~~~fI~rv~~ 162 (534)
T 2xub_A 94 TTKTLYSDTGELIVEELLLNGKLTMSAVVKKVADRLTETMEDGKTMDYAEVSNTFVRLADTHFVQRCPS 162 (534)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCBCHHHHHHHHHHHHHHTSSSSCCCCHHHHHHHHHHHHHTTSEEECCC
T ss_pred HHHHHhcHHHHHHHHHHHHcCCccHHHHHHHHHhhcccccccccccCHHHHHHHHHHHHhCCCEEeCCC
Confidence 1122222344667777777888889999888877651 13688999999999999999999764
No 19
>2l02_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=62.83 E-value=11 Score=31.61 Aligned_cols=46 Identities=15% Similarity=0.120 Sum_probs=35.9
Q ss_pred ccHHHHHHHhCCCHHHHHHHHHHhhc-CCceeeecCCCCCCCCCCCeEEEccCC
Q 003835 641 LSFQDIKDATGIEDKELRRTLQSLAC-GKVRVLQKLPKGRDVEDDDSFVFNEGF 693 (792)
Q Consensus 641 lt~~eI~~~T~i~~~eL~r~L~sL~~-~k~kiL~k~p~~~~i~~~d~f~~N~~F 693 (792)
+|+.||+..||++++++-..|-=|+. +|+.+-.+ +..-.+++|-.|
T Consensus 23 ~s~~el~k~t~l~d~el~lAIGWLaREdKI~~~~~-------~~~l~v~L~v~f 69 (82)
T 2l02_A 23 ISIPELARKVNLSVESTALAVGWLARENKVVIERK-------NGLIEIYNEGHF 69 (82)
T ss_dssp BCHHHHHHHHTCCHHHHHHHHHHHHTTTSEEEEEE-------TTEEEEEEGGGT
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHhccCceeEEee-------CCEEEEEEccce
Confidence 79999999999999999999999997 67777654 223345555544
No 20
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=62.63 E-value=5.8 Score=35.31 Aligned_cols=60 Identities=20% Similarity=0.340 Sum_probs=43.9
Q ss_pred hhHHHHHhhhcccccChHHHHHHHHHhcCCCCChHHHHHHHHHhhhhcccccCCCCCCceeec
Q 003835 729 VDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQIYNYL 791 (792)
Q Consensus 729 i~AaIVRIMK~rK~l~h~~Li~ev~~~lrF~~~~~~iKk~IE~LIereYl~Rd~~d~~~Y~Yl 791 (792)
-|..|.+++-....++..+|...+-. ...++++.+...|+.|.++|||+|..+++ .+.|.
T Consensus 11 ~q~~vL~~L~~~~~~t~~el~~~l~~--~~~~~~~Tvt~~l~rLe~kGlv~R~~~~r-~~~~~ 70 (126)
T 1sd4_A 11 AEWDVMNIIWDKKSVSANEIVVEIQK--YKEVSDKTIRTLITRLYKKEIIKRYKSEN-IYFYS 70 (126)
T ss_dssp HHHHHHHHHHHSSSEEHHHHHHHHHT--TSCCCHHHHHHHHHHHHHTTSEEEEEETT-EEEEE
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHhh--cCCCChhhHHHHHHHHHHCCceEEEeCCC-eEEEE
Confidence 35556666666677887777666532 23568999999999999999999987654 56663
No 21
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=60.47 E-value=7 Score=34.58 Aligned_cols=59 Identities=24% Similarity=0.439 Sum_probs=42.9
Q ss_pred hHHHHHhhhcccccChHHHHHHHHHhcCCCCChHHHHHHHHHhhhhcccccCCCCCCceeec
Q 003835 730 DAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQIYNYL 791 (792)
Q Consensus 730 ~AaIVRIMK~rK~l~h~~Li~ev~~~lrF~~~~~~iKk~IE~LIereYl~Rd~~d~~~Y~Yl 791 (792)
+..|..+......++-.+|...+-.. ..++.+.+-+.|+.|.++|||+|..+|+ .+.|+
T Consensus 12 ~~~vL~~l~~~~~~t~~ela~~l~~~--~~~s~~tv~~~l~~L~~~Glv~r~~~~r-r~~~~ 70 (123)
T 1okr_A 12 EWEVMNIIWMKKYASANNIIEEIQMQ--KDWSPKTIRTLITRLYKKGFIDRKKDNK-IFQYY 70 (123)
T ss_dssp HHHHHHHHHHHSSEEHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHTSEEEEEETT-EEEEE
T ss_pred HHHHHHHHHhCCCcCHHHHHHHHhcc--CCCcHhhHHHHHHHHHHCCCeEEEecCC-eEEEE
Confidence 44455555556778888877766433 3468899999999999999999977654 35553
No 22
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=57.74 E-value=8.7 Score=35.11 Aligned_cols=59 Identities=7% Similarity=0.116 Sum_probs=41.9
Q ss_pred hhHHHHHhhhc-ccccChHHHHHHHHHhcCCCCChHHHHHHHHHhhhhcccccCCCCCCceee
Q 003835 729 VDAAIVRIMKT-RKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQIYNY 790 (792)
Q Consensus 729 i~AaIVRIMK~-rK~l~h~~Li~ev~~~lrF~~~~~~iKk~IE~LIereYl~Rd~~d~~~Y~Y 790 (792)
-|..|.+++-. ...++..+|...+-.. -..+...+-..|+.|.++|||+|..+++ .+.|
T Consensus 10 ~e~~vL~~L~~~~~~~t~~el~~~l~~~--~~~~~~Tvt~~l~rLe~kGlv~r~~~~r-~~~~ 69 (138)
T 2g9w_A 10 LERAVMDHLWSRTEPQTVRQVHEALSAR--RDLAYTTVMAVLQRLAKKNLVLQIRDDR-AHRY 69 (138)
T ss_dssp HHHHHHHHHHTCSSCEEHHHHHHHHTTT--CCCCHHHHHHHHHHHHHTTSEEEEC----CCEE
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHhcc--CCCCHHHHHHHHHHHHHCCCEEEEecCC-eEEE
Confidence 45666677765 4678877776665322 3468999999999999999999987654 5665
No 23
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=55.13 E-value=12 Score=31.05 Aligned_cols=57 Identities=9% Similarity=0.025 Sum_probs=39.2
Q ss_pred hhhhhhhHHHHHhhhcc--cccChHHHHHHHHHhcCCCCChHHHHHHHHHhhhhcccccCCCCCC
Q 003835 724 DRQYQVDAAIVRIMKTR--KVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQ 786 (792)
Q Consensus 724 dR~~~i~AaIVRIMK~r--K~l~h~~Li~ev~~~lrF~~~~~~iKk~IE~LIereYl~Rd~~d~~ 786 (792)
+|..+|=..|-+-++.+ ...+-.||... +.+ ++..|.+-+..|-+++||+|+++.+.
T Consensus 4 ~r~~~IL~~I~~~i~~~~g~~psv~EIa~~----lgv--S~~TVrr~L~~Le~kG~I~R~~ggr~ 62 (77)
T 2jt1_A 4 SIVTKIISIVQERQNMDDGAPVKTRDIADA----AGL--SIYQVRLYLEQLHDVGVLEKVNAGKG 62 (77)
T ss_dssp THHHHHHHHHHHHHHHHTTSCEEHHHHHHH----HTC--CHHHHHHHHHHHHHTTSEEEESCSSS
T ss_pred HHHHHHHHHHHHHHhhccCCCcCHHHHHHH----HCC--CHHHHHHHHHHHHHCCcEEecCCCCC
Confidence 44445555555555554 66666665544 344 67889999999999999999976543
No 24
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=54.84 E-value=13 Score=31.44 Aligned_cols=36 Identities=14% Similarity=0.181 Sum_probs=30.7
Q ss_pred ccHHHHHHHhCCCHHHHHHHHHHhhcCCceeeecCCCC
Q 003835 641 LSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLPKG 678 (792)
Q Consensus 641 lt~~eI~~~T~i~~~eL~r~L~sL~~~k~kiL~k~p~~ 678 (792)
+|+.||++.+|++...+.++|..|. +.+++.+...|
T Consensus 37 ~~~~ela~~l~is~~tvs~~L~~L~--~~Glv~~~~~g 72 (98)
T 3jth_A 37 LSVGELCAKLQLSQSALSQHLAWLR--RDGLVTTRKEA 72 (98)
T ss_dssp EEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEECCT
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHH--HCCCeEEEEeC
Confidence 5889999999999999999999998 67777665544
No 25
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=54.35 E-value=14 Score=33.19 Aligned_cols=48 Identities=15% Similarity=0.340 Sum_probs=39.1
Q ss_pred hhhHHHHHhhhcccc--cChHHHHHHHHHhcCCCCChHHHHHHHHHhhhhcccccC
Q 003835 728 QVDAAIVRIMKTRKV--LSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERD 781 (792)
Q Consensus 728 ~i~AaIVRIMK~rK~--l~h~~Li~ev~~~lrF~~~~~~iKk~IE~LIereYl~Rd 781 (792)
..++.|.+++..... ++-.+|-..+ ..+.+.+-+.|+.|.++|||+|.
T Consensus 26 ~~e~~il~~L~~~~~~~~t~~eLa~~l------~~s~sTV~r~L~~L~~~GlV~r~ 75 (123)
T 3r0a_A 26 KADLNVMKSFLNEPDRWIDTDALSKSL------KLDVSTVQRSVKKLHEKEILQRS 75 (123)
T ss_dssp HHHHHHHHHHHHSTTCCEEHHHHHHHH------TSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHCCCCCcCHHHHHHHH------CcCHHHHHHHHHHHHHCCCEEee
Confidence 457788888877666 8888876654 36889999999999999999994
No 26
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=52.67 E-value=10 Score=34.89 Aligned_cols=24 Identities=17% Similarity=0.326 Sum_probs=22.0
Q ss_pred CCCCChHHHHHHHHHhhhhccccc
Q 003835 757 KFPIKPADLKKRIESLIDREYLER 780 (792)
Q Consensus 757 rF~~~~~~iKk~IE~LIereYl~R 780 (792)
++..++..|-+.|..|++||||+|
T Consensus 60 ~~~~s~~~v~~~L~~L~~KGlI~i 83 (135)
T 2v79_A 60 GMSISVEECTNRLRMFIQKGFLFI 83 (135)
T ss_dssp TSSSCHHHHHHHHHHHHHHTSCEE
T ss_pred HHCcCHHHHHHHHHHHHHCCCEEE
Confidence 467788999999999999999999
No 27
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=51.76 E-value=24 Score=28.85 Aligned_cols=62 Identities=13% Similarity=0.099 Sum_probs=45.7
Q ss_pred hhhHHHHHhhhcc--cccChHHHHHHHHHhcCCCCChHHHHHHHHHhhhhcccccCCCCCCceee
Q 003835 728 QVDAAIVRIMKTR--KVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQIYNY 790 (792)
Q Consensus 728 ~i~AaIVRIMK~r--K~l~h~~Li~ev~~~lrF~~~~~~iKk~IE~LIereYl~Rd~~d~~~Y~Y 790 (792)
.-..+|..++... ..++..+|...+-+. ...++.+.|-+.++.|.+.++|.|...+.+...|
T Consensus 17 ~~r~~IL~~l~~~~~~~~s~~el~~~l~~~-~~~is~~TVyR~L~~L~~~Glv~~~~~~~~~~~y 80 (83)
T 2fu4_A 17 LPRLKILEVLQEPDNHHVSAEDLYKRLIDM-GEEIGLATVYRVLNQFDDAGIVTRHNFEGGKSVF 80 (83)
T ss_dssp HHHHHHHHHHTSGGGSSBCHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHHTSEEEEECGGGCEEE
T ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHh-CCCCCHhhHHHHHHHHHHCCCeEEEeeCCCceEe
Confidence 3445678888765 589999988877554 2357899999999999999999996543333333
No 28
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=51.45 E-value=17 Score=30.82 Aligned_cols=59 Identities=14% Similarity=0.256 Sum_probs=41.5
Q ss_pred hHHHHHhhhcccccChHHHHHHHHHhcCCCCChHHHHHHHHHhhhhcccccCCCCCCceee
Q 003835 730 DAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQIYNY 790 (792)
Q Consensus 730 ~AaIVRIMK~rK~l~h~~Li~ev~~~lrF~~~~~~iKk~IE~LIereYl~Rd~~d~~~Y~Y 790 (792)
+..|...+.....++-.+|..++.+ .+..+.+.+-+.|..|.+++||+|..+.+..+.+
T Consensus 10 q~~iL~~l~~~~~~~~~el~~~la~--~l~is~~tvs~~l~~Le~~gli~r~~~~r~~~~~ 68 (99)
T 1tbx_A 10 EAIVLAYLYDNEGIATYDLYKKVNA--EFPMSTATFYDAKKFLIQEGFVKERQERGEKRLY 68 (99)
T ss_dssp HHHHHHHHTTCTTCBHHHHHHHHHT--TSCCCHHHHHHHHHHHHHTTSEEEEEETTEEEEE
T ss_pred HHHHHHHHHHcCCcCHHHHHHHHHH--HcCCCHHHHHHHHHHHHHCCCEEEEecCCceEEE
Confidence 4455555555677887777544433 3667889999999999999999997655444433
No 29
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=49.58 E-value=17 Score=29.91 Aligned_cols=52 Identities=13% Similarity=0.286 Sum_probs=41.3
Q ss_pred hHHHHHhhhccc---ccChHHHHHHHHHhcCCCCChHHHHHHHHHhhhhcccccCCCCCCc
Q 003835 730 DAAIVRIMKTRK---VLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQI 787 (792)
Q Consensus 730 ~AaIVRIMK~rK---~l~h~~Li~ev~~~lrF~~~~~~iKk~IE~LIereYl~Rd~~d~~~ 787 (792)
+-.|..+|+... .++-.+|-.++ -++...|.++|..|.+.++|+|.++.+..
T Consensus 16 ~~~IL~~L~~~~~~~~~t~~eLA~~L------gvs~~tV~~~L~~L~~~G~I~~~g~~~~~ 70 (77)
T 1qgp_A 16 EQRILKFLEELGEGKATTAHDLSGKL------GTPKKEINRVLYSLAKKGKLQKEAGTPPL 70 (77)
T ss_dssp HHHHHHHHHHHCSSSCEEHHHHHHHH------CCCHHHHHHHHHHHHHHTSEEEECSSSCE
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHH------CcCHHHHHHHHHHHHHCCCEEecCCCCCc
Confidence 455778899988 88887766653 36778999999999999999997665543
No 30
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=48.70 E-value=18 Score=30.65 Aligned_cols=42 Identities=17% Similarity=0.260 Sum_probs=34.3
Q ss_pred ccHHHHHHHhCCCHHHHHHHHHHhhcCCceeeecCCCCCCCCCCCeEEEccC
Q 003835 641 LSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLPKGRDVEDDDSFVFNEG 692 (792)
Q Consensus 641 lt~~eI~~~T~i~~~eL~r~L~sL~~~k~kiL~k~p~~~~i~~~d~f~~N~~ 692 (792)
+|+.||++.+|++...+.++|..|. +..++.+.+ | .|.++..
T Consensus 44 ~~~~eLa~~l~is~~tv~~~L~~L~--~~Glv~~~~-g-------~y~l~~~ 85 (96)
T 1y0u_A 44 RSEEEIMQTLSLSKKQLDYHLKVLE--AGFCIERVG-E-------RWVVTDA 85 (96)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEET-T-------EEEECTT
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEEEC-C-------EEEECCC
Confidence 6889999999999999999999998 666776543 2 6777764
No 31
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=47.96 E-value=31 Score=28.78 Aligned_cols=57 Identities=9% Similarity=0.106 Sum_probs=43.3
Q ss_pred hhhhHHHHHhhhcccccChHHHHHHHHHhcCCCCChHHHHHHHHHhhhhcccccCCCCCCcee
Q 003835 727 YQVDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQIYN 789 (792)
Q Consensus 727 ~~i~AaIVRIMK~rK~l~h~~Li~ev~~~lrF~~~~~~iKk~IE~LIereYl~Rd~~d~~~Y~ 789 (792)
...+..|.+.+.....++..+|...+ ..+.+.+-+.+..|.+.+||+|..+++..|.
T Consensus 23 ~~~~~~il~~l~~~~~~s~~ela~~l------~is~~tvs~~l~~L~~~glv~~~~~~r~~~y 79 (99)
T 3cuo_A 23 HPKRLLILCMLSGSPGTSAGELTRIT------GLSASATSQHLARMRDEGLIDSQRDAQRILY 79 (99)
T ss_dssp SHHHHHHHHHHTTCCSEEHHHHHHHH------CCCHHHHHHHHHHHHHTTSEEEEECSSCEEE
T ss_pred ChHHHHHHHHHHhCCCcCHHHHHHHH------CcCHHHHHHHHHHHHHCCCEEEEecCCEEEE
Confidence 34566778888776678877766543 5688899999999999999999876554443
No 32
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=46.34 E-value=16 Score=31.15 Aligned_cols=46 Identities=15% Similarity=0.267 Sum_probs=36.0
Q ss_pred ccHHHHHHHhCCCHHHHHHHHHHhhcCCceeeecCCCCCCCCCCCeEEEccC
Q 003835 641 LSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLPKGRDVEDDDSFVFNEG 692 (792)
Q Consensus 641 lt~~eI~~~T~i~~~eL~r~L~sL~~~k~kiL~k~p~~~~i~~~d~f~~N~~ 692 (792)
+|+.||++.+|++...+.++|..|. ..+++.+.+.|+ .-.|+++..
T Consensus 37 ~~~~ela~~l~is~~tvs~~L~~L~--~~Glv~~~~~g~----~~~y~l~~~ 82 (102)
T 3pqk_A 37 FSVGELEQQIGIGQPTLSQQLGVLR--ESGIVETRRNIK----QIFYRLTEA 82 (102)
T ss_dssp BCHHHHHHHHTCCTTHHHHHHHHHH--HTTSEEEECSSS----CCEEEECSS
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHH--HCCCeEEEEeCC----EEEEEECcH
Confidence 6899999999999999999999998 677777665543 235666553
No 33
>3omy_A Protein TRAM; DNA binding protein, dimer, bacterial conjugation, ribbon-HE helix, transcriptional repressor, DNA; 1.30A {Escherichia coli} SCOP: a.55.1.0
Probab=45.20 E-value=13 Score=28.12 Aligned_cols=40 Identities=15% Similarity=0.338 Sum_probs=29.8
Q ss_pred hHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHHHHhhh--ccH
Q 003835 233 VEHKTVTGLLRMIERERLGEAVDRTLLNHLLKMFTALG--IYS 273 (792)
Q Consensus 233 l~~~l~~~iL~lI~~eR~g~~id~~llk~~i~ml~~L~--vY~ 273 (792)
+++++.+.|-++++..|...+ .---+.++..||.+|| +|+
T Consensus 8 ~s~~v~~~I~~iVe~r~qeGA-~dvs~Ssv~smLleLGLrVYe 49 (52)
T 3omy_A 8 VNNNVYEQITDLVTIRKQEGI-EEASLSNVSSMLLELGLRVYM 49 (52)
T ss_dssp CCHHHHHHHHHHHHHHHHTTC-TTCCHHHHHHHHHHHHHHHHH
T ss_pred echHHHHHHHHHHHHHHHcCc-ccccHHHHHHHHHHhhhhhhh
Confidence 456777788888888887665 3334678999999998 675
No 34
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=45.12 E-value=31 Score=28.10 Aligned_cols=45 Identities=7% Similarity=0.087 Sum_probs=35.1
Q ss_pred HHHHHhhhcccccChHHHHHHHHHhcCCCCChHHHHHHHHHhhhhcccccC
Q 003835 731 AAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERD 781 (792)
Q Consensus 731 AaIVRIMK~rK~l~h~~Li~ev~~~lrF~~~~~~iKk~IE~LIereYl~Rd 781 (792)
..|++.+.....++-.+|... +-.+...+.+.+..|.+.++|+|.
T Consensus 3 ~~Il~~L~~~~~~s~~eLa~~------lgvs~~tv~r~L~~L~~~GlI~~~ 47 (81)
T 2htj_A 3 NEILEFLNRHNGGKTAEIAEA------LAVTDYQARYYLLLLEKAGMVQRS 47 (81)
T ss_dssp HHHHHHHHHSCCCCHHHHHHH------HTSCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHcCCCCHHHHHHH------HCcCHHHHHHHHHHHHHCCCEEEe
Confidence 346677777677777776554 456888999999999999999964
No 35
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=41.00 E-value=34 Score=28.49 Aligned_cols=52 Identities=13% Similarity=0.258 Sum_probs=41.6
Q ss_pred hhHHHHHhhhccc---ccChHHHHHHHHHhcCCCCChHHHHHHHHHhhhhcccccCCCCCC
Q 003835 729 VDAAIVRIMKTRK---VLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQ 786 (792)
Q Consensus 729 i~AaIVRIMK~rK---~l~h~~Li~ev~~~lrF~~~~~~iKk~IE~LIereYl~Rd~~d~~ 786 (792)
++-.|..+++... .++-.+|-.++ -++...|.++|..|.+.++|+|.+..+.
T Consensus 11 ~~~~IL~~L~~~~pg~~~t~~eLA~~L------gvsr~tV~~~L~~Le~~G~I~~~g~~~~ 65 (81)
T 1qbj_A 11 QEQRILKFLEELGEGKATTAHDLSGKL------GTPKKEINRVLYSLAKKGKLQKEAGTPP 65 (81)
T ss_dssp HHHHHHHHHHHHCTTCCBCHHHHHHHH------TCCHHHHHHHHHHHHHTTSEEEESSSSC
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHH------CcCHHHHHHHHHHHHHCCCEEecCCCCC
Confidence 4556888888888 88888876653 4777899999999999999999765554
No 36
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=40.31 E-value=27 Score=29.42 Aligned_cols=49 Identities=18% Similarity=0.355 Sum_probs=39.1
Q ss_pred hhhHHHHHhhhcccccChHHHHHHHHHhcCCCCChHHHHHHHHHhhhhcccccCC
Q 003835 728 QVDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDK 782 (792)
Q Consensus 728 ~i~AaIVRIMK~rK~l~h~~Li~ev~~~lrF~~~~~~iKk~IE~LIereYl~Rd~ 782 (792)
..+..|...+.....++-.+|...+ ..+.+.+-+.|..|.++|||+|..
T Consensus 20 ~~~~~il~~l~~~~~~s~~ela~~l------~is~~tv~~~l~~L~~~glv~~~~ 68 (109)
T 1sfx_A 20 PSDVRIYSLLLERGGMRVSEIAREL------DLSARFVRDRLKVLLKRGFVRREI 68 (109)
T ss_dssp HHHHHHHHHHHHHCCBCHHHHHHHH------TCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH------CCCHHHHHHHHHHHHHCCCEEEEe
Confidence 4566777777777778877766654 678899999999999999999954
No 37
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=40.23 E-value=36 Score=27.71 Aligned_cols=48 Identities=21% Similarity=0.227 Sum_probs=34.3
Q ss_pred ccHHHHHHHhCCCHHHHHHHHHHhhcCCceeeecCCCCCCCCCCCeEEEccC
Q 003835 641 LSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLPKGRDVEDDDSFVFNEG 692 (792)
Q Consensus 641 lt~~eI~~~T~i~~~eL~r~L~sL~~~k~kiL~k~p~~~~i~~~d~f~~N~~ 692 (792)
+|..||++.+|++...+.+.|..|. +.+++.+.+.+. ..+-.|.++..
T Consensus 15 ~s~~eLa~~lgvs~~tv~r~L~~L~--~~GlI~~~~~~~--gr~~~y~l~~~ 62 (81)
T 2htj_A 15 GKTAEIAEALAVTDYQARYYLLLLE--KAGMVQRSPLRR--GMATYWFLKGE 62 (81)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHH--HHTSEEEECCSS--SSSCEEEESSC
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEEeccCC--CCcEEEEEChh
Confidence 7899999999999999999999998 556665433211 12345555543
No 38
>2l01_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Bacteroides vulgatus}
Probab=38.70 E-value=33 Score=28.36 Aligned_cols=34 Identities=32% Similarity=0.282 Sum_probs=30.6
Q ss_pred ccHHHHHHHhCC-CHHHHHHHHHHhhc-CCceeeec
Q 003835 641 LSFQDIKDATGI-EDKELRRTLQSLAC-GKVRVLQK 674 (792)
Q Consensus 641 lt~~eI~~~T~i-~~~eL~r~L~sL~~-~k~kiL~k 674 (792)
+|+.+|+..||+ +++++-..|-=|+. +|+.+-.+
T Consensus 25 ~s~~el~k~t~l~~d~el~lAiGWLaREdKI~~~~~ 60 (77)
T 2l01_A 25 LTQKQIKKATKLKADKDFFLGLGWLLREDKVVTSEV 60 (77)
T ss_dssp EEHHHHHHHHTCSCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCHHHHHHHHCCCCHHHHHHHHHHHhhcCceEEEee
Confidence 799999999999 99999999999998 77777654
No 39
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=37.95 E-value=19 Score=28.63 Aligned_cols=26 Identities=15% Similarity=0.217 Sum_probs=24.5
Q ss_pred ccHHHHHHHhCCCHHHHHHHHHHhhc
Q 003835 641 LSFQDIKDATGIEDKELRRTLQSLAC 666 (792)
Q Consensus 641 lt~~eI~~~T~i~~~eL~r~L~sL~~ 666 (792)
+|..||++.+|++...+.+.|..|..
T Consensus 26 ~s~~eLA~~lglsr~tv~~~l~~L~~ 51 (67)
T 2heo_A 26 VAIFQLVKKCQVPKKTLNQVLYRLKK 51 (67)
T ss_dssp EEHHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 78999999999999999999999984
No 40
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=37.85 E-value=39 Score=31.11 Aligned_cols=54 Identities=17% Similarity=0.269 Sum_probs=38.9
Q ss_pred hhhHHHHHhhhcccccChHHHHHHHHHhcCCCCChHHHHHHHHHhhhhcccccC--CCCCCc
Q 003835 728 QVDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERD--KNNPQI 787 (792)
Q Consensus 728 ~i~AaIVRIMK~rK~l~h~~Li~ev~~~lrF~~~~~~iKk~IE~LIereYl~Rd--~~d~~~ 787 (792)
..+..|..++.....++-.+|-.. +-.+++.+-+.|..|.++|||+|. ++|+..
T Consensus 46 ~~q~~iL~~l~~~~~~t~~eLa~~------l~~~~~tvs~~l~~Le~~Glv~r~~~~~DrR~ 101 (162)
T 3k0l_A 46 LPQFTALSVLAAKPNLSNAKLAER------SFIKPQSANKILQDLLANGWIEKAPDPTHGRR 101 (162)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHH------HTSCGGGHHHHHHHHHHTTSEEEEECCSSSCC
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHH------HCCCHHHHHHHHHHHHHCcCeEecCCCCcCCe
Confidence 345566666666677777666554 356788899999999999999984 455543
No 41
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=37.39 E-value=32 Score=30.55 Aligned_cols=35 Identities=23% Similarity=0.248 Sum_probs=28.9
Q ss_pred ccHHHHHHHhCCCHHHHHHHHHHhhcCCceeeecCCC
Q 003835 641 LSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLPK 677 (792)
Q Consensus 641 lt~~eI~~~T~i~~~eL~r~L~sL~~~k~kiL~k~p~ 677 (792)
+|+.||++.+|++...+.++|..|. ..+++...+.
T Consensus 57 ~s~~eLa~~l~is~stvs~~L~~L~--~~Glv~~~~~ 91 (122)
T 1u2w_A 57 LCVCDIANILGVTIANASHHLRTLY--KQGVVNFRKE 91 (122)
T ss_dssp EEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEC--
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHHH--HCCCeEEEEE
Confidence 5889999999999999999999998 6677765443
No 42
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=37.15 E-value=44 Score=30.22 Aligned_cols=46 Identities=15% Similarity=0.212 Sum_probs=34.1
Q ss_pred hhHHHHHhhhcccccChHHHHHHHHHhcCCCCChHHHHHHHHHhhhhccccc
Q 003835 729 VDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLER 780 (792)
Q Consensus 729 i~AaIVRIMK~rK~l~h~~Li~ev~~~lrF~~~~~~iKk~IE~LIereYl~R 780 (792)
.+..|...+.....++-.+|...+ ..+++.+-+.|..|.++|||+|
T Consensus 42 ~~~~iL~~l~~~~~~t~~eLa~~l------~~~~~tvs~~l~~Le~~Glv~r 87 (154)
T 2qww_A 42 QQLAMINVIYSTPGISVADLTKRL------IITGSSAAANVDGLISLGLVVK 87 (154)
T ss_dssp HHHHHHHHHHHSTTEEHHHHHHHH------TCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHH------CCCHHHHHHHHHHHHHCCCEEe
Confidence 345556666556667766655543 4678899999999999999999
No 43
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=36.96 E-value=43 Score=31.26 Aligned_cols=47 Identities=19% Similarity=0.352 Sum_probs=42.0
Q ss_pred hhhHHHHHhhhcccccChHHHHHHHHHhcCCCCChHHHHHHHHHhhhhccccc
Q 003835 728 QVDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLER 780 (792)
Q Consensus 728 ~i~AaIVRIMK~rK~l~h~~Li~ev~~~lrF~~~~~~iKk~IE~LIereYl~R 780 (792)
.+|-.|++++.....++..+|-.++ -.+++.+.++|..|.++++|+|
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~l------g~s~~tv~~rl~~L~~~g~i~~ 49 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKV------GLSTTPCWRRIQKMEEDGVIRR 49 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHH------TCCHHHHHHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHH------CcCHHHHHHHHHHHHHCCCeee
Confidence 3678899999999999999987764 6889999999999999999997
No 44
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=36.68 E-value=23 Score=32.17 Aligned_cols=53 Identities=9% Similarity=0.322 Sum_probs=35.4
Q ss_pred hhhHHHHHhhhcccccChHHHHHHHHHhcCCCCChHHHHHHHHHhhhhccccc----CCCCCCc
Q 003835 728 QVDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLER----DKNNPQI 787 (792)
Q Consensus 728 ~i~AaIVRIMK~rK~l~h~~Li~ev~~~lrF~~~~~~iKk~IE~LIereYl~R----d~~d~~~ 787 (792)
.-+..|..++ ....++-.+|-..+ -.+++.+-+.|..|.++|||+| ++.|+..
T Consensus 38 ~~q~~iL~~l-~~~~~t~~eLa~~l------~~~~~~vs~~l~~Le~~Glv~r~~~~~~~D~R~ 94 (151)
T 3kp7_A 38 AEQSHVLNML-SIEALTVGQITEKQ------GVNKAAVSRRVKKLLNAELVKLEKPDSNTDQRL 94 (151)
T ss_dssp HHHHHHHHHH-HHSCBCHHHHHHHH------CSCSSHHHHHHHHHHHTTSEEC-----------
T ss_pred HHHHHHHHHH-HcCCcCHHHHHHHH------CCCHHHHHHHHHHHHHCCCEEeeCCCCCCCCCe
Confidence 3455666666 77788887766553 4667788899999999999998 6677653
No 45
>1oks_A RNA polymerase alpha subunit; transferase, RNA-directed RNA polymerase, nucleocapsid, phosphorylation.; HET: NHE; 1.8A {Measles virus} SCOP: a.8.5.1 PDB: 1t6o_A 2k9d_A
Probab=36.36 E-value=44 Score=25.32 Aligned_cols=46 Identities=13% Similarity=0.239 Sum_probs=37.8
Q ss_pred HHHHHHhcCCCCCChHHHHHHHHHHHHhhhhhHHHHHHHHHHhHHh
Q 003835 499 KDLAKRLLLGKSASIDAEKSMISKLKTECGSQFTNKLEGMFKDIEL 544 (792)
Q Consensus 499 ~~LakRLL~~~s~s~d~E~~mi~kLk~ecG~~fT~kLe~MfkDi~~ 544 (792)
+-+.||++.......|.-+.|++-|+..-|..--..+-+|++-|-+
T Consensus 4 rsViRSvikSS~l~~~hK~~ml~LL~dikg~~dL~eF~qMl~~I~~ 49 (56)
T 1oks_A 4 RSVIRSIIKSSRLEEDRKRYLMTLLDDIKGANDLAKFHQMLVKIIM 49 (56)
T ss_dssp HHHHHHHHHHSCSCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHccccchHHHHHHHHHHHHH
Confidence 4578888877777788888999999999998888888888887643
No 46
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=35.75 E-value=28 Score=31.21 Aligned_cols=53 Identities=11% Similarity=0.215 Sum_probs=36.5
Q ss_pred hhhHHHHHhhhcccccChHHHHHHHHHhcCCCCChHHHHHHHHHhhhhcccccCC--CCCC
Q 003835 728 QVDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDK--NNPQ 786 (792)
Q Consensus 728 ~i~AaIVRIMK~rK~l~h~~Li~ev~~~lrF~~~~~~iKk~IE~LIereYl~Rd~--~d~~ 786 (792)
.-+..|..++.....++-.+|-.. +..+++.+-+.|..|.++|||+|.+ +|+.
T Consensus 36 ~~q~~vL~~l~~~~~~t~~eLa~~------l~~~~~tvs~~l~~L~~~Glv~r~~~~~D~R 90 (140)
T 3hsr_A 36 YTGYIVLMAIENDEKLNIKKLGER------VFLDSGTLTPLLKKLEKKDYVVRTREEKDER 90 (140)
T ss_dssp HHHHHHHHHSCTTCEEEHHHHHHH------HTCCHHHHHHHHHHHHHTTSEEEEC------
T ss_pred HHHHHHHHHHHHcCCcCHHHHHHH------HCCChhhHHHHHHHHHHCCCeEecCCCCCcc
Confidence 345556666666667776665554 3578899999999999999999854 4543
No 47
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=35.46 E-value=25 Score=28.90 Aligned_cols=33 Identities=39% Similarity=0.430 Sum_probs=27.8
Q ss_pred ccHHHHHHHhCCCHHHHHHHHHHhhcCCceeeecC
Q 003835 641 LSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKL 675 (792)
Q Consensus 641 lt~~eI~~~T~i~~~eL~r~L~sL~~~k~kiL~k~ 675 (792)
+|..||++.+|++...+.+.|..|. +..++...
T Consensus 32 ~t~~eLA~~Lgvs~~tV~~~L~~L~--~~G~I~~~ 64 (77)
T 1qgp_A 32 TTAHDLSGKLGTPKKEINRVLYSLA--KKGKLQKE 64 (77)
T ss_dssp EEHHHHHHHHCCCHHHHHHHHHHHH--HHTSEEEE
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEec
Confidence 6899999999999999999999997 54455443
No 48
>2xub_A DNA-directed RNA polymerase III subunit RPC3; transcription, winged helix; 2.80A {Homo sapiens} PDB: 2xv4_S
Probab=35.12 E-value=1.5e+02 Score=33.51 Aligned_cols=115 Identities=20% Similarity=0.197 Sum_probs=76.9
Q ss_pred ccHHHHHHHh----CCCHHHHHHHHHHhhcCCceeeecCCCCCCCCCCCeEEEccCCCCCceeEEecccccccchhhhhh
Q 003835 641 LSFQDIKDAT----GIEDKELRRTLQSLACGKVRVLQKLPKGRDVEDDDSFVFNEGFTAPLYRIKVNAIQMKETVEENTS 716 (792)
Q Consensus 641 lt~~eI~~~T----~i~~~eL~r~L~sL~~~k~kiL~k~p~~~~i~~~d~f~~N~~Ft~~~~riki~~i~~ket~~e~~~ 716 (792)
+|+.+|.+.. ++....+.++|.-|+++..+++.+.+.+ .+..|.||.. .+ ...=...
T Consensus 288 is~~~I~~~l~~~~~l~~~~l~~~L~lL~~~~~~fv~~~g~~----g~g~y~V~~~-----------~~----~~~lr~~ 348 (534)
T 2xub_A 288 LSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFVGKSGDS----GGGMYVINLH-----------KA----LASLATA 348 (534)
T ss_dssp EEHHHHHHTSCTTCCCCHHHHHHHHHHHHSCTTCCEEECCCC----SSCEEEEBHH-----------HH----HHHHHHH
T ss_pred ccHHHHHHHcCCcccccHHHHHHHHHHHhCCcHHhhhccccC----CCceEEEeHH-----------HH----HHHHHHH
Confidence 4677777654 6778999999999998777888876532 2556776642 10 0111233
Q ss_pred hhHHHHhhhhhhhhHHHHHhhhcccccChHHHHHHHHHhcCCCCChHHHHHHHHHhhhhccccc
Q 003835 717 TTERVFQDRQYQVDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLER 780 (792)
Q Consensus 717 t~e~v~~dR~~~i~AaIVRIMK~rK~l~h~~Li~ev~~~lrF~~~~~~iKk~IE~LIereYl~R 780 (792)
..+.+..+|--..=+-|+|+|..++.++-.+|-..+ -.+..++++.+=.|.+.+|+.=
T Consensus 349 ~ie~ii~~~~G~~a~RI~r~L~~~~~l~d~~ia~~a------~i~~k~vR~~Ly~L~~~g~v~~ 406 (534)
T 2xub_A 349 TLESVVQERFGSRCARIFRLVLQKKHIEQKQVEDFA------MIPAKEAKDMLYKMLSENFMSL 406 (534)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHC---CHHHHHHHH------CSCHHHHHHHHHHHHHTTCC--
T ss_pred HHHHHHHHHhChHHHHHHHHHHHcCCCCHHHHHHHh------CCCHHHHHHHHHHHHHCCCeEE
Confidence 446666666666445599999999888887766654 4567889999999999999863
No 49
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=34.92 E-value=42 Score=29.97 Aligned_cols=48 Identities=8% Similarity=0.168 Sum_probs=34.8
Q ss_pred hhHHHHHhhhcccccChHHHHHHHHHhcCCCCChHHHHHHHHHhhhhcccccCC
Q 003835 729 VDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDK 782 (792)
Q Consensus 729 i~AaIVRIMK~rK~l~h~~Li~ev~~~lrF~~~~~~iKk~IE~LIereYl~Rd~ 782 (792)
.+..|..++.....++..+|-.. ...+++.+-+.|..|.++|||+|.+
T Consensus 38 ~~~~iL~~l~~~~~~t~~eLa~~------l~~~~~~vs~~l~~L~~~Glv~r~~ 85 (143)
T 3oop_A 38 EQWSVLEGIEANEPISQKEIALW------TKKDTPTVNRIVDVLLRKELIVREI 85 (143)
T ss_dssp HHHHHHHHHHHHSSEEHHHHHHH------HTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHHHcCCcCHHHHHHH------HCCCHhhHHHHHHHHHHCCCeeccC
Confidence 34455555555566666665544 3678889999999999999999854
No 50
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=34.73 E-value=22 Score=29.68 Aligned_cols=34 Identities=12% Similarity=0.200 Sum_probs=29.2
Q ss_pred ccHHHHHHHhCCCHHHHHHHHHHhhcCCceeeecCC
Q 003835 641 LSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLP 676 (792)
Q Consensus 641 lt~~eI~~~T~i~~~eL~r~L~sL~~~k~kiL~k~p 676 (792)
+|..||++.+|++...+.++|..|. +.+++.+.+
T Consensus 39 ~s~~ela~~l~is~~tvs~~l~~L~--~~glv~~~~ 72 (99)
T 3cuo_A 39 TSAGELTRITGLSASATSQHLARMR--DEGLIDSQR 72 (99)
T ss_dssp EEHHHHHHHHCCCHHHHHHHHHHHH--HTTSEEEEE
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEEEe
Confidence 6889999999999999999999998 666665543
No 51
>1dp3_A TRAM protein; helix-loop-helix, DNA binding protein; NMR {Escherichia coli} SCOP: a.55.1.2
Probab=33.96 E-value=13 Score=28.59 Aligned_cols=42 Identities=21% Similarity=0.395 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHhcCCcCCh-HHHHHHHHHHHhhh--ccHHh
Q 003835 234 EHKTVTGLLRMIERERLGEAVDR-TLLNHLLKMFTALG--IYSES 275 (792)
Q Consensus 234 ~~~l~~~iL~lI~~eR~g~~id~-~llk~~i~ml~~L~--vY~~~ 275 (792)
++++.+.|-++++..|...+-+. --+.++..||.+|| ||+-.
T Consensus 8 s~~v~~~I~~ive~r~qeGA~~~dvs~Ssv~smLleLGLrVYe~q 52 (55)
T 1dp3_A 8 SDEIVYKINKIVERRRAEGAKSTDVSFSSISTMLLELGLRVYEAQ 52 (55)
T ss_dssp CCTHHHHHHHHHHHHHHHTCCSTTCCHHHHHHHHHHHTTSHHHHT
T ss_pred hhHHHHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHhHHHHHHh
Confidence 34556667777777886444222 23678899999998 77643
No 52
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=33.63 E-value=43 Score=30.30 Aligned_cols=52 Identities=6% Similarity=0.150 Sum_probs=34.2
Q ss_pred hhHHHHHhhhcccccChHHHHHHHHHhcCCCCChHHHHHHHHHhhhhcccccC--CCCCC
Q 003835 729 VDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERD--KNNPQ 786 (792)
Q Consensus 729 i~AaIVRIMK~rK~l~h~~Li~ev~~~lrF~~~~~~iKk~IE~LIereYl~Rd--~~d~~ 786 (792)
.+..|..++.....++..+|... +..+++.+-+.|..|.++|||+|. ++|+.
T Consensus 42 ~q~~iL~~l~~~~~~~~~eLa~~------l~~~~~~vs~~l~~L~~~Glv~r~~~~~D~R 95 (149)
T 4hbl_A 42 SQYLVMLTLWEENPQTLNSIGRH------LDLSSNTLTPMLKRLEQSGWVKRERQQSDKR 95 (149)
T ss_dssp HHHHHHHHHHHSSSEEHHHHHHH------HTCCHHHHHHHHHHHHHHTSEEC--------
T ss_pred HHHHHHHHHHHCCCCCHHHHHHH------HCCCHHHHHHHHHHHHHCCCEeeCCCCCCcc
Confidence 45555566655666666665544 367888999999999999999995 34543
No 53
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=33.39 E-value=63 Score=29.26 Aligned_cols=53 Identities=8% Similarity=0.048 Sum_probs=37.9
Q ss_pred hhHHHHHhhhcccccChHHHHHHHHHhcCCCCChHHHHHHHHHhhhhcccccC--CCCCCc
Q 003835 729 VDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERD--KNNPQI 787 (792)
Q Consensus 729 i~AaIVRIMK~rK~l~h~~Li~ev~~~lrF~~~~~~iKk~IE~LIereYl~Rd--~~d~~~ 787 (792)
.+..|...+.....++-.+|... +..+.+.+-+.|..|.+++||+|. +.|+..
T Consensus 45 ~~~~iL~~l~~~~~~t~~ela~~------l~is~~tvs~~l~~Le~~Gli~r~~~~~d~R~ 99 (154)
T 2eth_A 45 TELYAFLYVALFGPKKMKEIAEF------LSTTKSNVTNVVDSLEKRGLVVREMDPVDRRT 99 (154)
T ss_dssp HHHHHHHHHHHHCCBCHHHHHHH------TTSCHHHHHHHHHHHHHTTSEEEEECTTTSSC
T ss_pred HHHHHHHHHHHcCCCCHHHHHHH------HCCCHHHHHHHHHHHHHCCCEEeeCCCCCcce
Confidence 45556666666666776665543 457888999999999999999994 445443
No 54
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=32.96 E-value=27 Score=31.55 Aligned_cols=26 Identities=8% Similarity=0.342 Sum_probs=22.8
Q ss_pred CCCCChHHHHHHHHHhhhhcccccCC
Q 003835 757 KFPIKPADLKKRIESLIDREYLERDK 782 (792)
Q Consensus 757 rF~~~~~~iKk~IE~LIereYl~Rd~ 782 (792)
+...++..|.++|..|+++|||+|..
T Consensus 60 ~l~~s~~~V~~~l~~Le~kGlI~~~~ 85 (128)
T 2vn2_A 60 RMTVSAAECMEMVRRLLQKGMIAIEE 85 (128)
T ss_dssp TSSSCHHHHHHHHHHHHHTTSSEECC
T ss_pred HHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 36778999999999999999999953
No 55
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=32.44 E-value=28 Score=29.19 Aligned_cols=32 Identities=13% Similarity=0.293 Sum_probs=27.6
Q ss_pred ccHHHHHHHhCCCHHHHHHHHHHhhcCCceeeec
Q 003835 641 LSFQDIKDATGIEDKELRRTLQSLACGKVRVLQK 674 (792)
Q Consensus 641 lt~~eI~~~T~i~~~eL~r~L~sL~~~k~kiL~k 674 (792)
+|+.||+...|++...+.++|..|. +-.++.+
T Consensus 31 ~sa~eLAk~LgiSk~aVr~~L~~Le--~eG~I~~ 62 (82)
T 1oyi_A 31 ATAAQLTRQLNMEKREVNKALYDLQ--RSAMVYS 62 (82)
T ss_dssp EEHHHHHHHSSSCHHHHHHHHHHHH--HHTSSEE
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEe
Confidence 7999999999999999999999997 4445544
No 56
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=32.30 E-value=45 Score=29.53 Aligned_cols=51 Identities=14% Similarity=0.328 Sum_probs=33.1
Q ss_pred hHHHHHhhhcc--cccChHHHHHHHHHhcCCCCChHHHHHHHHHhhhhccccc--CCCCCC
Q 003835 730 DAAIVRIMKTR--KVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLER--DKNNPQ 786 (792)
Q Consensus 730 ~AaIVRIMK~r--K~l~h~~Li~ev~~~lrF~~~~~~iKk~IE~LIereYl~R--d~~d~~ 786 (792)
+..|......+ ..++-.+|... +..+++.+-+.|..|.++|||+| |+.|+.
T Consensus 39 q~~vL~~l~~~~~~~~t~~eLa~~------l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R 93 (127)
T 2frh_A 39 EFAVLTYISENKEKEYYLKDIINH------LNYKQPQVVKAVKILSQEDYFDKKRNEHDER 93 (127)
T ss_dssp HHHHHHHHHHTCCSEEEHHHHHHH------SSSHHHHHHHHHHHHHHTTSSCCBCCSSSSC
T ss_pred HHHHHHHHHhccCCCcCHHHHHHH------HCCCHHHHHHHHHHHHHCCCEEecCCCCCCC
Confidence 33444444444 44555444332 45678889999999999999999 455543
No 57
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=32.27 E-value=34 Score=28.46 Aligned_cols=32 Identities=41% Similarity=0.473 Sum_probs=27.2
Q ss_pred ccHHHHHHHhCCCHHHHHHHHHHhhcCCceeeec
Q 003835 641 LSFQDIKDATGIEDKELRRTLQSLACGKVRVLQK 674 (792)
Q Consensus 641 lt~~eI~~~T~i~~~eL~r~L~sL~~~k~kiL~k 674 (792)
+|..||++.+|++...+.+.|..|. +-.++.+
T Consensus 28 ~t~~eLA~~Lgvsr~tV~~~L~~Le--~~G~I~~ 59 (81)
T 1qbj_A 28 TTAHDLSGKLGTPKKEINRVLYSLA--KKGKLQK 59 (81)
T ss_dssp BCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEE
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEe
Confidence 7899999999999999999999997 4444444
No 58
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=31.98 E-value=43 Score=30.66 Aligned_cols=52 Identities=13% Similarity=0.220 Sum_probs=36.0
Q ss_pred hhHHHHHhhhcccccChHHHHHHHHHhcCCCCChHHHHHHHHHhhhhcccccC--CCCCC
Q 003835 729 VDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERD--KNNPQ 786 (792)
Q Consensus 729 i~AaIVRIMK~rK~l~h~~Li~ev~~~lrF~~~~~~iKk~IE~LIereYl~Rd--~~d~~ 786 (792)
.+..|..++.....++..+|-.. +-.+++.+-+.|..|.++|||+|. ++|+.
T Consensus 51 ~q~~vL~~l~~~~~~t~~eLa~~------l~~~~~tvs~~l~~Le~~Glv~r~~~~~DrR 104 (159)
T 3s2w_A 51 GQFPFLMRLYREDGINQESLSDY------LKIDKGTTARAIQKLVDEGYVFRQRDEKDRR 104 (159)
T ss_dssp TTHHHHHHHHHSCSEEHHHHHHH------HTCCHHHHHHHHHHHHHTTSEEEEECC---C
T ss_pred HHHHHHHHHHHCCCCCHHHHHHH------HCCCHHHHHHHHHHHHHCCCEEEecCCCCCC
Confidence 45556666666666766665443 367889999999999999999984 44544
No 59
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=31.91 E-value=71 Score=27.45 Aligned_cols=54 Identities=15% Similarity=0.164 Sum_probs=39.3
Q ss_pred hHHHHHhhhcccccChHHHHHHHHHhcCC-CCChHHHHHHHHHhhhhcccccC--CCCCCceee
Q 003835 730 DAAIVRIMKTRKVLSHTLLITELFQQLKF-PIKPADLKKRIESLIDREYLERD--KNNPQIYNY 790 (792)
Q Consensus 730 ~AaIVRIMK~rK~l~h~~Li~ev~~~lrF-~~~~~~iKk~IE~LIereYl~Rd--~~d~~~Y~Y 790 (792)
...|.+.+. ...++..+|... . ..+++.+-+++..|.+++||+|. +.|+....|
T Consensus 16 ~~~IL~~L~-~~~~~~~eLa~~------l~~is~~tls~~L~~Le~~GlI~r~~~~~d~r~~~y 72 (107)
T 2hzt_A 16 KXVILXHLT-HGKKRTSELKRL------MPNITQKMLTQQLRELEADGVINRIVYNQVPPKVEY 72 (107)
T ss_dssp HHHHHHHHT-TCCBCHHHHHHH------CTTSCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEE
T ss_pred HHHHHHHHH-hCCCCHHHHHHH------hcCCCHHHHHHHHHHHHHCCCEEEeecCCCCCeEEE
Confidence 344666665 567888777664 4 67899999999999999999984 445544433
No 60
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=31.43 E-value=1.2e+02 Score=25.26 Aligned_cols=57 Identities=18% Similarity=0.248 Sum_probs=43.7
Q ss_pred hhhHHHHHhhhcccccChHHHHHHHHHhcCCCCChHHHHHHHHHhhhhcccccCCCCCCceeec
Q 003835 728 QVDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQIYNYL 791 (792)
Q Consensus 728 ~i~AaIVRIMK~rK~l~h~~Li~ev~~~lrF~~~~~~iKk~IE~LIereYl~Rd~~d~~~Y~Yl 791 (792)
.....|++.+.. ..++..+|...+ ..+.+.+-+.+..|.+.|+++|..+.+..|.++
T Consensus 23 ~~r~~Il~~L~~-~~~~~~ela~~l------~is~~tvs~~L~~L~~~Glv~~~~~g~~~~y~l 79 (98)
T 3jth_A 23 ERRLQILCMLHN-QELSVGELCAKL------QLSQSALSQHLAWLRRDGLVTTRKEAQTVYYTL 79 (98)
T ss_dssp HHHHHHHHHTTT-SCEEHHHHHHHH------TCCHHHHHHHHHHHHHTTSEEEECCTTCCEEEE
T ss_pred HHHHHHHHHHhc-CCCCHHHHHHHH------CcCHHHHHHHHHHHHHCCCeEEEEeCCEEEEEE
Confidence 445578888876 778887766654 567889999999999999999987766665443
No 61
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=31.39 E-value=62 Score=28.56 Aligned_cols=52 Identities=17% Similarity=0.259 Sum_probs=36.6
Q ss_pred hhHHHHHhhhccc--ccChHHHHHHHHHhcCCCCChHHHHHHHHHhhhhcccccC--CCCCC
Q 003835 729 VDAAIVRIMKTRK--VLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERD--KNNPQ 786 (792)
Q Consensus 729 i~AaIVRIMK~rK--~l~h~~Li~ev~~~lrF~~~~~~iKk~IE~LIereYl~Rd--~~d~~ 786 (792)
-+..|..++.... .++-.+|... +..+.+.+-+.|..|.++|||+|. ++|+.
T Consensus 35 ~~~~iL~~l~~~~~~~~~~~ela~~------l~~~~~tvs~~l~~Le~~Gli~r~~~~~d~R 90 (141)
T 3bro_A 35 TQMTIIDYLSRNKNKEVLQRDLESE------FSIKSSTATVLLQRMEIKKLLYRKVSGKDSR 90 (141)
T ss_dssp HHHHHHHHHHHTTTSCCBHHHHHHH------HTCCHHHHHHHHHHHHHTTSEEEEECSSCTT
T ss_pred HHHHHHHHHHHCCCCCcCHHHHHHH------HCCCcchHHHHHHHHHHCCCEEeeCCCcCCC
Confidence 3455555555555 5676666554 356788999999999999999984 44544
No 62
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=31.33 E-value=45 Score=29.87 Aligned_cols=49 Identities=8% Similarity=0.089 Sum_probs=37.2
Q ss_pred hhhHHHHHhhhcccccChHHHHHHHHHhcCCCCChHHHHHHHHHhhhhcccccCC
Q 003835 728 QVDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDK 782 (792)
Q Consensus 728 ~i~AaIVRIMK~rK~l~h~~Li~ev~~~lrF~~~~~~iKk~IE~LIereYl~Rd~ 782 (792)
.-+..|..++.....++..+|-.. +-.+++.+-+.|..|.++|||+|.+
T Consensus 31 ~~q~~iL~~l~~~~~~t~~eLa~~------l~~~~~tvs~~l~~Le~~Glv~r~~ 79 (145)
T 3g3z_A 31 YNLFAVLYTLATEGSRTQKHIGEK------WSLPKQTVSGVCKTLAGQGLIEWQE 79 (145)
T ss_dssp HHHHHHHHHHHHHCSBCHHHHHHH------HTCCHHHHHHHHHHHHHTTSEEECC
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHH------HCCCHHHHHHHHHHHHHCCCEeecc
Confidence 345666666666667777776554 3578888999999999999999944
No 63
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=30.61 E-value=54 Score=28.81 Aligned_cols=52 Identities=15% Similarity=0.349 Sum_probs=35.0
Q ss_pred hhHHHHHhhhcccccChHHHHHHHHHhcCCCCChHHHHHHHHHhhhhccccc--CCCCCC
Q 003835 729 VDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLER--DKNNPQ 786 (792)
Q Consensus 729 i~AaIVRIMK~rK~l~h~~Li~ev~~~lrF~~~~~~iKk~IE~LIereYl~R--d~~d~~ 786 (792)
.+..|...+.....++..+|... +..+.+.+-+.|..|.++|||+| ++.|+.
T Consensus 34 ~~~~iL~~l~~~~~~~~~ela~~------l~~~~~tvs~~l~~L~~~gli~r~~~~~d~r 87 (139)
T 3bja_A 34 VQFGVIQVLAKSGKVSMSKLIEN------MGCVPSNMTTMIQRMKRDGYVMTEKNPNDQR 87 (139)
T ss_dssp HHHHHHHHHHHSCSEEHHHHHHH------CSSCCTTHHHHHHHHHHTTSEEEEECSSCTT
T ss_pred HHHHHHHHHHHcCCcCHHHHHHH------HCCChhHHHHHHHHHHHCCCeeeccCCCCCc
Confidence 34445555555556666555432 45667778899999999999999 444544
No 64
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=30.11 E-value=63 Score=29.92 Aligned_cols=51 Identities=14% Similarity=0.303 Sum_probs=35.3
Q ss_pred hHHHHHhhhcccccChHHHHHHHHHhcCCCCChHHHHHHHHHhhhhccccc--CCCCCC
Q 003835 730 DAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLER--DKNNPQ 786 (792)
Q Consensus 730 ~AaIVRIMK~rK~l~h~~Li~ev~~~lrF~~~~~~iKk~IE~LIereYl~R--d~~d~~ 786 (792)
+..|..++.....++-.+|-.. .-.+.+.+-+.|..|.++|||+| ++.|+.
T Consensus 47 ~~~iL~~L~~~~~~t~~eLa~~------l~is~~tvs~~l~~Le~~GlV~r~~~~~DrR 99 (168)
T 2nyx_A 47 QFRTLVILSNHGPINLATLATL------LGVQPSATGRMVDRLVGAELIDRLPHPTSRR 99 (168)
T ss_dssp HHHHHHHHHHHCSEEHHHHHHH------HTSCHHHHHHHHHHHHHTTSEEEEECSSCSS
T ss_pred HHHHHHHHHHcCCCCHHHHHHH------hCCCHHHHHHHHHHHHHCCCEEeccCCCCCC
Confidence 4445555555555665555443 36788899999999999999999 455554
No 65
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=29.83 E-value=31 Score=29.38 Aligned_cols=32 Identities=16% Similarity=0.223 Sum_probs=27.7
Q ss_pred ccHHHHHHHhCCCHHHHHHHHHHhhcCCceeeecC
Q 003835 641 LSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKL 675 (792)
Q Consensus 641 lt~~eI~~~T~i~~~eL~r~L~sL~~~k~kiL~k~ 675 (792)
+|+.||++.+|++...+.++|..|. .. ++...
T Consensus 42 ~~~~ela~~l~is~stvs~hL~~L~--~~-lv~~~ 73 (99)
T 2zkz_A 42 LNVTQIIQILKLPQSTVSQHLCKMR--GK-VLKRN 73 (99)
T ss_dssp EEHHHHHHHHTCCHHHHHHHHHHHB--TT-TBEEE
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHHH--HH-hhhhe
Confidence 6889999999999999999999997 55 66543
No 66
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=29.65 E-value=64 Score=29.16 Aligned_cols=49 Identities=8% Similarity=0.101 Sum_probs=36.7
Q ss_pred hhhHHHHHhhhcccccChHHHHHHHHHhcCCCCChHHHHHHHHHhhhhcccccCC
Q 003835 728 QVDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDK 782 (792)
Q Consensus 728 ~i~AaIVRIMK~rK~l~h~~Li~ev~~~lrF~~~~~~iKk~IE~LIereYl~Rd~ 782 (792)
..+..|..++.....++..+|-.. ...+.+.+-+.|..|.++|||+|..
T Consensus 43 ~~~~~iL~~l~~~~~~t~~ela~~------l~i~~~tvs~~l~~Le~~Glv~r~~ 91 (155)
T 3cdh_A 43 VPEWRVLACLVDNDAMMITRLAKL------SLMEQSRMTRIVDQMDARGLVTRVA 91 (155)
T ss_dssp HHHHHHHHHHSSCSCBCHHHHHHH------TTCCHHHHHHHHHHHHHTTSEEECC
T ss_pred HHHHHHHHHHHHCCCcCHHHHHHH------HCCCHHHHHHHHHHHHHCCCEEecc
Confidence 345566666666667776665543 4678889999999999999999954
No 67
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=29.47 E-value=79 Score=27.97 Aligned_cols=48 Identities=10% Similarity=0.168 Sum_probs=36.6
Q ss_pred hhHHHHHhh-hcccccChHHHHHHHHHhcCCCCChHHHHHHHHHhhhhcccccCC
Q 003835 729 VDAAIVRIM-KTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDK 782 (792)
Q Consensus 729 i~AaIVRIM-K~rK~l~h~~Li~ev~~~lrF~~~~~~iKk~IE~LIereYl~Rd~ 782 (792)
.+..|..++ .....++..+|...+ -.+++.+-+.|..|.+++||+|.+
T Consensus 38 ~~~~iL~~l~~~~~~~t~~~la~~l------~~s~~~vs~~l~~L~~~glv~r~~ 86 (146)
T 2fbh_A 38 ARWLVLLHLARHRDSPTQRELAQSV------GVEGPTLARLLDGLESQGLVRRLA 86 (146)
T ss_dssp THHHHHHHHHHCSSCCBHHHHHHHH------TCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHh------CCChhhHHHHHHHHHHCCCeeecC
Confidence 455566666 666777777766543 578888999999999999999954
No 68
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=29.38 E-value=33 Score=27.94 Aligned_cols=34 Identities=15% Similarity=0.208 Sum_probs=29.2
Q ss_pred ccHHHHHHHh-----CCCHHHHHHHHHHhhcCCceeeecCC
Q 003835 641 LSFQDIKDAT-----GIEDKELRRTLQSLACGKVRVLQKLP 676 (792)
Q Consensus 641 lt~~eI~~~T-----~i~~~eL~r~L~sL~~~k~kiL~k~p 676 (792)
+|.+||.+.+ +++...+-|+|..|. +.+++.+.+
T Consensus 34 ~s~~el~~~l~~~~~~is~~TVyR~L~~L~--~~Glv~~~~ 72 (83)
T 2fu4_A 34 VSAEDLYKRLIDMGEEIGLATVYRVLNQFD--DAGIVTRHN 72 (83)
T ss_dssp BCHHHHHHHHHHTTCCCCHHHHHHHHHHHH--HHTSEEEEE
T ss_pred CCHHHHHHHHHHhCCCCCHhhHHHHHHHHH--HCCCeEEEe
Confidence 6899999999 999999999999998 666666543
No 69
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=29.38 E-value=64 Score=27.69 Aligned_cols=53 Identities=17% Similarity=0.298 Sum_probs=38.5
Q ss_pred HHHHHhhhcccccChHHHHHHHHHhcCCC-CChHHHHHHHHHhhhhcccccC--CCCCCceee
Q 003835 731 AAIVRIMKTRKVLSHTLLITELFQQLKFP-IKPADLKKRIESLIDREYLERD--KNNPQIYNY 790 (792)
Q Consensus 731 AaIVRIMK~rK~l~h~~Li~ev~~~lrF~-~~~~~iKk~IE~LIereYl~Rd--~~d~~~Y~Y 790 (792)
..|.+.+. ...++..+|... .. .++..+-+.+..|.++|+|+|. +.|+....|
T Consensus 28 ~~IL~~L~-~~~~~~~eL~~~------l~gis~~~ls~~L~~Le~~GlV~r~~~~~d~r~~~y 83 (107)
T 2fsw_A 28 LLIIFQIN-RRIIRYGELKRA------IPGISEKMLIDELKFLCGKGLIKKKQYPEVPPRVEY 83 (107)
T ss_dssp HHHHHHHT-TSCEEHHHHHHH------STTCCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEE
T ss_pred HHHHHHHH-hCCcCHHHHHHH------cccCCHHHHHHHHHHHHHCCCEEEeecCCCCCeeEE
Confidence 34666665 567787776654 44 8899999999999999999994 445544443
No 70
>3mhs_B Protein SUS1; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3fwc_C 3fwb_C 3kjl_A 3m99_C 3mhh_B 3kik_A 4fip_B 4fjc_B 4fk5_B
Probab=28.43 E-value=90 Score=26.87 Aligned_cols=59 Identities=15% Similarity=0.262 Sum_probs=44.6
Q ss_pred HHHHH-HHHHHHHHHHHhcCCCCccHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHH
Q 003835 104 EEDTW-AKLKLAIKAIFLKQPTSCDLEKLYQAVNDLCLHKMGGNLYQRIEKECEEHISAAI 163 (792)
Q Consensus 104 ~e~~W-~~L~~AI~~I~~~~~~~~s~e~LY~~Vy~lC~~k~~e~LY~~l~~~~~~~l~~~~ 163 (792)
.+.+| ..++.....+.... ...+|++|+..|.--.+.--.+.+...+...+..++..++
T Consensus 34 ~EcGW~Devr~~~r~~i~~~-~~vt~~~L~~~I~P~Ar~~VP~~VK~Ell~~Ir~fL~~~v 93 (96)
T 3mhs_B 34 LQEGWVDKVKDLTKSEMNIN-ESTNFTQILSTVEPKALEMVSDSTRETVLKQIREFLEEIV 93 (96)
T ss_dssp HHTTHHHHHHHHHHHHHHHH-TCCCHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHE
T ss_pred HHCCcHHHHHHHHHHHHHhc-CCCCHHHHHHHHhHHHHHHCCHHHHHHHHHHHHHHHHHHh
Confidence 46788 47888777777655 5779999999998888777777777777777777766554
No 71
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=28.32 E-value=26 Score=30.47 Aligned_cols=34 Identities=21% Similarity=0.221 Sum_probs=29.2
Q ss_pred ccHHHHHHHhCCCHHHHHHHHHHhhcCCceeeecCC
Q 003835 641 LSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLP 676 (792)
Q Consensus 641 lt~~eI~~~T~i~~~eL~r~L~sL~~~k~kiL~k~p 676 (792)
+|+.||++.+|++...+.++|..|. +.+++.+.+
T Consensus 39 ~s~~eLa~~lgis~stvs~~L~~L~--~~GlV~~~~ 72 (108)
T 2kko_A 39 RAVEAIATATGMNLTTASANLQALK--SGGLVEARR 72 (108)
T ss_dssp EEHHHHHHHHTCCHHHHHHHHHHHH--HHTSEEEEE
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHHH--HCCCeEEEE
Confidence 5889999999999999999999998 667776543
No 72
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=28.32 E-value=81 Score=27.94 Aligned_cols=52 Identities=8% Similarity=0.098 Sum_probs=36.5
Q ss_pred hhHHHHHhhhcccccChHHHHHHHHHhcCCCCChHHHHHHHHHhhhhcccccC--CCCCC
Q 003835 729 VDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERD--KNNPQ 786 (792)
Q Consensus 729 i~AaIVRIMK~rK~l~h~~Li~ev~~~lrF~~~~~~iKk~IE~LIereYl~Rd--~~d~~ 786 (792)
.+..|...+.....++..+|... +..+.+.+-+.|..|.+++||+|. +.|+.
T Consensus 30 ~~~~iL~~l~~~~~~t~~~la~~------l~~s~~~vs~~l~~Le~~gli~r~~~~~d~R 83 (144)
T 1lj9_A 30 GQYLYLVRVCENPGIIQEKIAEL------IKVDRTTAARAIKRLEEQGFIYRQEDASNKK 83 (144)
T ss_dssp THHHHHHHHHHSTTEEHHHHHHH------HTCCHHHHHHHHHHHHHTTSEEEEECSSCTT
T ss_pred HHHHHHHHHHHCcCcCHHHHHHH------HCCCHhHHHHHHHHHHHCCCEEeecCCCCCc
Confidence 34455555555566666665554 356888999999999999999994 44544
No 73
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=28.25 E-value=63 Score=29.63 Aligned_cols=32 Identities=16% Similarity=0.360 Sum_probs=28.8
Q ss_pred ccHHHHHHHhCCCHHHHHHHHHHhhcCCceeeec
Q 003835 641 LSFQDIKDATGIEDKELRRTLQSLACGKVRVLQK 674 (792)
Q Consensus 641 lt~~eI~~~T~i~~~eL~r~L~sL~~~k~kiL~k 674 (792)
+|.++|++.+|+|...|.+.|..|. +..++..
T Consensus 29 ~s~~~IA~~~~i~~~~l~kil~~L~--~aGlv~s 60 (143)
T 3t8r_A 29 ISLKSIAEENNLSDLYLEQLVGPLR--NAGLIRS 60 (143)
T ss_dssp EEHHHHHHHTTCCHHHHHHHHHHHH--HTTSEEE
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHHH--HCCEEEe
Confidence 6899999999999999999999998 7777754
No 74
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=28.07 E-value=53 Score=29.27 Aligned_cols=51 Identities=24% Similarity=0.407 Sum_probs=35.6
Q ss_pred hhHHHHHhhhcccccChHHHHHHHHHhcCCCCChHHHHHHHHHhhhhcccccCC--CCCC
Q 003835 729 VDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDK--NNPQ 786 (792)
Q Consensus 729 i~AaIVRIMK~rK~l~h~~Li~ev~~~lrF~~~~~~iKk~IE~LIereYl~Rd~--~d~~ 786 (792)
.+..|...+.... ++-.+|-..+ ..+.+.+-+.|..|.++|||+|.+ +|+.
T Consensus 39 ~~~~iL~~l~~~~-~t~~eLa~~l------~~s~~tvs~~l~~L~~~Glv~r~~~~~d~R 91 (146)
T 3tgn_A 39 TQEHILMLLSEES-LTNSELARRL------NVSQAAVTKAIKSLVKEGMLETSKDSKDAR 91 (146)
T ss_dssp HHHHHHHHHTTCC-CCHHHHHHHH------TCCHHHHHHHHHHHHHTTSEEC--------
T ss_pred HHHHHHHHHHhCC-CCHHHHHHHH------CCCHHHHHHHHHHHHHCCCeEeccCCCCCc
Confidence 4455666666666 8887776653 578888999999999999999954 3544
No 75
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=27.95 E-value=75 Score=27.91 Aligned_cols=52 Identities=12% Similarity=0.258 Sum_probs=36.6
Q ss_pred hhHHHHHhhhcccccChHHHHHHHHHhcCCCCChHHHHHHHHHhhhhcccccC--CCCCC
Q 003835 729 VDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERD--KNNPQ 786 (792)
Q Consensus 729 i~AaIVRIMK~rK~l~h~~Li~ev~~~lrF~~~~~~iKk~IE~LIereYl~Rd--~~d~~ 786 (792)
-+..|...+.....++-.+|... ...+.+.+-+.|..|.++|||+|. ++|+.
T Consensus 35 ~~~~iL~~l~~~~~~~~~~la~~------l~~~~~tvs~~l~~L~~~gli~r~~~~~d~R 88 (138)
T 1jgs_A 35 AQFKVLCSIRCAACITPVELKKV------LSVDLGALTRMLDRLVCKGWVERLPNPNDKR 88 (138)
T ss_dssp HHHHHHHHHHHHSSBCHHHHHHH------HTCCHHHHHHHHHHHHHTTSEEEEECTTCSS
T ss_pred HHHHHHHHHHhcCCCCHHHHHHH------HCCChHHHHHHHHHHHHCCCEEecCCcccCc
Confidence 34555555655566666665532 356888899999999999999994 44544
No 76
>2ou2_A Histone acetyltransferase htatip; structural genomics, structural genomics consortium, SGC; HET: ALY ACO; 2.30A {Homo sapiens}
Probab=27.87 E-value=35 Score=35.21 Aligned_cols=27 Identities=30% Similarity=0.477 Sum_probs=25.0
Q ss_pred cccHHHHHHHhCCCHHHHHHHHHHhhc
Q 003835 640 QLSFQDIKDATGIEDKELRRTLQSLAC 666 (792)
Q Consensus 640 Qlt~~eI~~~T~i~~~eL~r~L~sL~~ 666 (792)
++|++||+++|||..+|+..+|++|-.
T Consensus 212 ~isi~~is~~T~i~~~Dii~tL~~l~~ 238 (280)
T 2ou2_A 212 QITINEISEITSIKKEDVISTLQYLNL 238 (280)
T ss_dssp CCBHHHHHHHHCBCHHHHHHHHHHTTC
T ss_pred ceeHHHHHHHhCCCHHHHHHHHHHCCc
Confidence 489999999999999999999999963
No 77
>3f8b_A Transcriptional regulator, PADR-like family; winged helix turn helix, transcription regulator; 2.00A {Lactococcus lactis subsp} SCOP: a.4.5.0 PDB: 3f8c_A* 3f8f_A*
Probab=27.80 E-value=1.3e+02 Score=26.46 Aligned_cols=56 Identities=11% Similarity=0.094 Sum_probs=48.0
Q ss_pred hhhhhhHHHHHhhhcccccChHHHHHHHHHhc--CCCCChHHHHHHHHHhhhhcccccC
Q 003835 725 RQYQVDAAIVRIMKTRKVLSHTLLITELFQQL--KFPIKPADLKKRIESLIDREYLERD 781 (792)
Q Consensus 725 R~~~i~AaIVRIMK~rK~l~h~~Li~ev~~~l--rF~~~~~~iKk~IE~LIereYl~Rd 781 (792)
++-.++.+|..++. ++.+.--+|..++-+.. .+.+++..|=..+..|-+++||++.
T Consensus 9 ~~g~l~~~IL~~L~-~~~~~Gyei~~~l~~~~~~~~~i~~gtly~~L~rLe~~GlI~~~ 66 (116)
T 3f8b_A 9 LRAQTNVILLNVLK-QGDNYVYGIIKQVKEASNGEMELNEATLYTIFKRLEKDGIISSY 66 (116)
T ss_dssp HHHHHHHHHHHHHH-HCCBCHHHHHHHHHHHTTTCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HhchHHHHHHHHHH-hCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHCCCEEEE
Confidence 55678999999997 46777789998887766 4799999999999999999999985
No 78
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=27.68 E-value=31 Score=29.66 Aligned_cols=33 Identities=15% Similarity=0.251 Sum_probs=28.7
Q ss_pred ccHHHHHHHhCCCHHHHHHHHHHhhcCCceeeecC
Q 003835 641 LSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKL 675 (792)
Q Consensus 641 lt~~eI~~~T~i~~~eL~r~L~sL~~~k~kiL~k~ 675 (792)
+|+.||++.+|++...+.++|..|. ..+++...
T Consensus 40 ~~~~ela~~l~is~stvs~~L~~L~--~~Glv~~~ 72 (106)
T 1r1u_A 40 ASVGHISHQLNLSQSNVSHQLKLLK--SVHLVKAK 72 (106)
T ss_dssp BCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHH--HCCCeEEE
Confidence 6899999999999999999999998 66666543
No 79
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=27.67 E-value=55 Score=29.37 Aligned_cols=47 Identities=21% Similarity=0.335 Sum_probs=39.2
Q ss_pred hhHHHHHhhhcccccChHHHHHHHHHhcCCCCChHHHHHHHHHhhhhcccccC
Q 003835 729 VDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERD 781 (792)
Q Consensus 729 i~AaIVRIMK~rK~l~h~~Li~ev~~~lrF~~~~~~iKk~IE~LIereYl~Rd 781 (792)
+|..|++.+.....++..+|-.++ -.++..+.+++..|.+.|+|+|-
T Consensus 5 ~~~~il~~L~~~~~~~~~ela~~l------g~s~~tv~~~l~~L~~~G~i~~~ 51 (141)
T 1i1g_A 5 RDKIILEILEKDARTPFTEIAKKL------GISETAVRKRVKALEEKGIIEGY 51 (141)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHH------TSCHHHHHHHHHHHHHHTSSCCC
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHH------CcCHHHHHHHHHHHHHCCCEecc
Confidence 566788888877888888876654 57899999999999999999874
No 80
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=27.30 E-value=64 Score=30.32 Aligned_cols=45 Identities=13% Similarity=0.364 Sum_probs=34.7
Q ss_pred ccHHHHHHHhCCCHHHHHHHHHHhhcCCceeeecCCCCCCCCCCCeEEEccC
Q 003835 641 LSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLPKGRDVEDDDSFVFNEG 692 (792)
Q Consensus 641 lt~~eI~~~T~i~~~eL~r~L~sL~~~k~kiL~k~p~~~~i~~~d~f~~N~~ 692 (792)
+|.++|++.+|+|...|.+.|..|. +..++..... ++.-|.+...
T Consensus 45 ~s~~eIA~~~~i~~~~l~kil~~L~--~aGlv~s~rG-----~~GGy~Lar~ 89 (159)
T 3lwf_A 45 ISLRSIAQDKNLSEHYLEQLIGPLR--NAGIVKSIRG-----AHGGYVLNGD 89 (159)
T ss_dssp BCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEECS-----TTCEEEECSC
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHHH--HCCeEEEecC-----CCCceEecCC
Confidence 7999999999999999999999998 7777764321 2234666553
No 81
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=27.24 E-value=63 Score=31.12 Aligned_cols=57 Identities=19% Similarity=0.300 Sum_probs=39.5
Q ss_pred hhhhhhhHHHHHhhhccc-ccChHHHHHHHHHhcCCCCChHHHHHHHHHhhhhcccccCCCCCC
Q 003835 724 DRQYQVDAAIVRIMKTRK-VLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQ 786 (792)
Q Consensus 724 dR~~~i~AaIVRIMK~rK-~l~h~~Li~ev~~~lrF~~~~~~iKk~IE~LIereYl~Rd~~d~~ 786 (792)
.|+.+|=.+|...++.+. ..+..||-.. +..+ .+.+.+++..|-+++||+|+++.+.
T Consensus 5 ~~q~~il~~I~~~~~~~g~~~s~~eia~~----lgl~--~~tv~~~l~~Le~~G~i~~~~~~~r 62 (196)
T 3k2z_A 5 ERQRKVLLFIEEFIEKNGYPPSVREIARR----FRIT--PRGALLHLIALEKKGYIERKNGKPR 62 (196)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCCHHHHHHH----HTSC--HHHHHHHHHHHHHTTSEECC---TT
T ss_pred HHHHHHHHHHHHHHHHhCCCCCHHHHHHH----cCCC--cHHHHHHHHHHHHCCCEEecCCCcc
Confidence 366677788888887665 5776665544 3333 4469999999999999999876544
No 82
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=27.14 E-value=92 Score=26.55 Aligned_cols=53 Identities=21% Similarity=0.246 Sum_probs=39.4
Q ss_pred hhhHHHHHhhhcccccChHHHHHHHHHhcCCCCChHHHHHHHHHhhhhcccccCCCCCCc
Q 003835 728 QVDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQI 787 (792)
Q Consensus 728 ~i~AaIVRIMK~rK~l~h~~Li~ev~~~lrF~~~~~~iKk~IE~LIereYl~Rd~~d~~~ 787 (792)
.....|.+.+ ....++..+|... +..+.+.+-+.+..|.+.+||+|..+.+..
T Consensus 21 ~~r~~IL~~L-~~~~~~~~ela~~------l~is~~tv~~~l~~L~~~gli~~~~~gr~~ 73 (114)
T 2oqg_A 21 ETRWEILTEL-GRADQSASSLATR------LPVSRQAIAKHLNALQACGLVESVKVGREI 73 (114)
T ss_dssp HHHHHHHHHH-HHSCBCHHHHHHH------SSSCHHHHHHHHHHHHHTTSEEEEEETTEE
T ss_pred hHHHHHHHHH-HcCCCCHHHHHHH------HCcCHHHHHHHHHHHHHCCCeeEEecCCEE
Confidence 4556677777 4566777766554 468889999999999999999987654433
No 83
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=27.11 E-value=64 Score=29.51 Aligned_cols=47 Identities=13% Similarity=0.162 Sum_probs=33.2
Q ss_pred hHHHHHhhhcccccChHHHHHHHHHhcCCCCChHHHHHHHHHhhhhcccccCC
Q 003835 730 DAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDK 782 (792)
Q Consensus 730 ~AaIVRIMK~rK~l~h~~Li~ev~~~lrF~~~~~~iKk~IE~LIereYl~Rd~ 782 (792)
+..|..++.....++-.+|-. .+-.+.+.+-+.|..|.++|||+|..
T Consensus 55 q~~vL~~l~~~~~~t~~eLa~------~l~~~~~~vs~~l~~Le~~Glv~r~~ 101 (161)
T 3e6m_A 55 KLRLLSSLSAYGELTVGQLAT------LGVMEQSTTSRTVDQLVDEGLAARSI 101 (161)
T ss_dssp HHHHHHHHHHHSEEEHHHHHH------HTTCCHHHHHHHHHHHHHTTSEEECC
T ss_pred HHHHHHHHHhCCCCCHHHHHH------HHCCCHHHHHHHHHHHHHCCCEEeeC
Confidence 444555555555555555443 25678889999999999999999954
No 84
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=27.06 E-value=58 Score=28.94 Aligned_cols=45 Identities=11% Similarity=0.287 Sum_probs=33.3
Q ss_pred ccHHHHHHHhCCCHHHHHHHHHHhhcCCceeeecCCCCCCCCCCCeEEEccC
Q 003835 641 LSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLPKGRDVEDDDSFVFNEG 692 (792)
Q Consensus 641 lt~~eI~~~T~i~~~eL~r~L~sL~~~k~kiL~k~p~~~~i~~~d~f~~N~~ 692 (792)
+|..||++.+|+|...+.+.|..|. +.+++...+. .+..|.+...
T Consensus 27 ~s~~ela~~~~i~~~~v~~il~~L~--~~Glv~~~~g-----~~ggy~L~~~ 71 (129)
T 2y75_A 27 TSLKSIAQTNNLSEHYLEQLVSPLR--NAGLVKSIRG-----AYGGYVLGSE 71 (129)
T ss_dssp BCHHHHHHHTTSCHHHHHHHHHHHH--HTTSEEEC---------CCEEESSC
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHH--HCCceEecCC-----CCCceEeCCC
Confidence 6899999999999999999999998 6677655431 1234666554
No 85
>2ozu_A Histone acetyltransferase MYST3; structural genomics, structural G consortium, SGC; HET: ALY ACO; 2.30A {Homo sapiens} SCOP: d.108.1.1 PDB: 2rc4_A* 1m36_A
Probab=26.90 E-value=36 Score=35.08 Aligned_cols=25 Identities=28% Similarity=0.496 Sum_probs=23.3
Q ss_pred ccHHHHHHHhCCCHHHHHHHHHHhh
Q 003835 641 LSFQDIKDATGIEDKELRRTLQSLA 665 (792)
Q Consensus 641 lt~~eI~~~T~i~~~eL~r~L~sL~ 665 (792)
+|++||+++|||..+|+..+|++|-
T Consensus 215 isi~~is~~T~i~~~DIi~tL~~l~ 239 (284)
T 2ozu_A 215 ISIKKLSKLTGICPQDITSTLHHLR 239 (284)
T ss_dssp -CHHHHHHHHCBCHHHHHHHHHHTT
T ss_pred EeHHHHHHHhCCCHHHHHHHHHHCC
Confidence 8999999999999999999999995
No 86
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=26.67 E-value=67 Score=28.34 Aligned_cols=52 Identities=6% Similarity=0.114 Sum_probs=35.4
Q ss_pred hhHHHHHhhhccc--ccChHHHHHHHHHhcCCCCChHHHHHHHHHhhhhcccccC--CCCCC
Q 003835 729 VDAAIVRIMKTRK--VLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERD--KNNPQ 786 (792)
Q Consensus 729 i~AaIVRIMK~rK--~l~h~~Li~ev~~~lrF~~~~~~iKk~IE~LIereYl~Rd--~~d~~ 786 (792)
.+..|...+-... .++-.+|-.. +-.+++.+-+.|..|.++|||+|. +.|+.
T Consensus 32 ~~~~vL~~l~~~~~~~~t~~ela~~------l~~~~~tvs~~l~~Le~~Gli~r~~~~~D~R 87 (139)
T 3eco_A 32 EQGHTLGYLYAHQQDGLTQNDIAKA------LQRTGPTVSNLLRNLERKKLIYRYVDAQDTR 87 (139)
T ss_dssp HHHHHHHHHHHSTTTCEEHHHHHHH------HTCCHHHHHHHHHHHHHTTSEEEEECCC--C
T ss_pred HHHHHHHHHHhcCCCCcCHHHHHHH------hCCCcccHHHHHHHHHHCCCEeecCCCCCCC
Confidence 4455555555544 6666665544 357888999999999999999984 45544
No 87
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=26.49 E-value=66 Score=28.58 Aligned_cols=53 Identities=19% Similarity=0.319 Sum_probs=36.9
Q ss_pred hHHHHHhhh-cccccChHHHHHHHHHhcCCCCChHHHHHHHHHhhhhcccccC--CCCCCce
Q 003835 730 DAAIVRIMK-TRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERD--KNNPQIY 788 (792)
Q Consensus 730 ~AaIVRIMK-~rK~l~h~~Li~ev~~~lrF~~~~~~iKk~IE~LIereYl~Rd--~~d~~~Y 788 (792)
++.|..++- ....++..+|...+ ..+.+.+-+.+..|.++|||+|. ++|+..|
T Consensus 28 ~~~il~~L~~~~~~~t~~ela~~l------~~~~stvs~~l~~L~~~G~v~r~~~~~d~r~~ 83 (152)
T 1ku9_A 28 VGAVYAILYLSDKPLTISDIMEEL------KISKGNVSMSLKKLEELGFVRKVWIKGERKNY 83 (152)
T ss_dssp HHHHHHHHHHCSSCEEHHHHHHHH------TCCHHHHHHHHHHHHHTTSEEEECCTTCSSCE
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHH------CcCHHHHHHHHHHHHHCCCEEEEecCCCceEE
Confidence 334444442 35667777766653 56788899999999999999996 4555443
No 88
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=26.45 E-value=64 Score=28.35 Aligned_cols=47 Identities=13% Similarity=0.259 Sum_probs=35.8
Q ss_pred hhHHHHHhhhcccccChHHHHHHHHHhcCCCCChHHHHHHHHHhhhhcccccC
Q 003835 729 VDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERD 781 (792)
Q Consensus 729 i~AaIVRIMK~rK~l~h~~Li~ev~~~lrF~~~~~~iKk~IE~LIereYl~Rd 781 (792)
.+..|...+.....++..+|...+ ..+.+.+-+.|..|.++|||+|.
T Consensus 30 ~~~~iL~~l~~~~~~~~~ela~~l------~~s~~tvs~~l~~L~~~glv~~~ 76 (138)
T 3bpv_A 30 AQVACLLRIHREPGIKQDELATFF------HVDKGTIARTLRRLEESGFIERE 76 (138)
T ss_dssp HHHHHHHHHHHSTTCBHHHHHHHH------TCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHH------CCCHHHHHHHHHHHHHCCCEEee
Confidence 455566666666777776665543 56888999999999999999994
No 89
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=26.36 E-value=1.2e+02 Score=26.88 Aligned_cols=52 Identities=10% Similarity=0.205 Sum_probs=36.6
Q ss_pred hhHHHHHhhhcccccChHHHHHHHHHhcCCCCChHHHHHHHHHhhhhcccccC--CCCCCc
Q 003835 729 VDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERD--KNNPQI 787 (792)
Q Consensus 729 i~AaIVRIMK~rK~l~h~~Li~ev~~~lrF~~~~~~iKk~IE~LIereYl~Rd--~~d~~~ 787 (792)
.+..|...+. ...++..+|... +..+.+.+-+.|..|.++|||+|. +.|+..
T Consensus 38 ~~~~iL~~l~-~~~~~~~ela~~------l~~s~~tvs~~l~~Le~~glv~r~~~~~d~r~ 91 (146)
T 2gxg_A 38 LDFLVLRATS-DGPKTMAYLANR------YFVTQSAITASVDKLEEMGLVVRVRDREDRRK 91 (146)
T ss_dssp HHHHHHHHHT-TSCBCHHHHHHH------TTCCHHHHHHHHHHHHHTTSEEEEECSSCTTC
T ss_pred HHHHHHHHHh-cCCcCHHHHHHH------hCCCchhHHHHHHHHHHCCCEEeecCCCCCce
Confidence 3455555555 666776665543 467888999999999999999984 445443
No 90
>3to7_A Histone acetyltransferase ESA1; MYST family; HET: ALY COA; 1.90A {Saccharomyces cerevisiae} SCOP: d.108.1.1 PDB: 3to6_A* 1fy7_A* 1mja_A* 1mjb_A* 3to9_A* 1mj9_A*
Probab=26.22 E-value=36 Score=34.90 Aligned_cols=25 Identities=16% Similarity=0.403 Sum_probs=24.1
Q ss_pred ccHHHHHHHhCCCHHHHHHHHHHhh
Q 003835 641 LSFQDIKDATGIEDKELRRTLQSLA 665 (792)
Q Consensus 641 lt~~eI~~~T~i~~~eL~r~L~sL~ 665 (792)
+|+++|+++|||..+|+..+|+.|-
T Consensus 209 isi~~is~~Tgi~~~Dii~tL~~l~ 233 (276)
T 3to7_A 209 ITIDEISSMTSMTTTDILHTAKTLN 233 (276)
T ss_dssp EEHHHHHHHHCBCHHHHHHHHHHTT
T ss_pred eeHHHHHHHhCCCHHHHHHHHHHCC
Confidence 8999999999999999999999995
No 91
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=26.04 E-value=59 Score=26.94 Aligned_cols=47 Identities=15% Similarity=0.248 Sum_probs=36.2
Q ss_pred hhHHHHHhhhcccccChHHHHHHHHHhcCCCCChHHHHHHHHHhhhhcccccC
Q 003835 729 VDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERD 781 (792)
Q Consensus 729 i~AaIVRIMK~rK~l~h~~Li~ev~~~lrF~~~~~~iKk~IE~LIereYl~Rd 781 (792)
.+-.|.+.+.....++..+|... +..+.+.+-+.|..|.+.+||+|.
T Consensus 17 ~~~~iL~~L~~~~~~~~~ela~~------l~is~~tvs~~l~~L~~~gli~~~ 63 (100)
T 1ub9_A 17 VRLGIMIFLLPRRKAPFSQIQKV------LDLTPGNLDSHIRVLERNGLVKTY 63 (100)
T ss_dssp HHHHHHHHHHHHSEEEHHHHHHH------TTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHhcCCcCHHHHHHH------HCcCHHHHHHHHHHHHHCCCEEEE
Confidence 45566666655667777776654 467888999999999999999974
No 92
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=26.01 E-value=74 Score=28.98 Aligned_cols=46 Identities=20% Similarity=0.309 Sum_probs=39.0
Q ss_pred hhHHHHHhhhcccccChHHHHHHHHHhcCCCCChHHHHHHHHHhhhhccccc
Q 003835 729 VDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLER 780 (792)
Q Consensus 729 i~AaIVRIMK~rK~l~h~~Li~ev~~~lrF~~~~~~iKk~IE~LIereYl~R 780 (792)
+|-.|.+.+.....++..+|-.+ +-.+++.+.++|..|.++|+|+|
T Consensus 10 ~d~~il~~L~~~~~~s~~ela~~------lg~s~~tv~~~l~~L~~~G~i~~ 55 (151)
T 2dbb_A 10 VDMQLVKILSENSRLTYRELADI------LNTTRQRIARRIDKLKKLGIIRK 55 (151)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHH------TTSCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHHHcCCCCHHHHHHH------HCcCHHHHHHHHHHHHHCCCEEE
Confidence 45578888888888998887665 46789999999999999999997
No 93
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=25.99 E-value=87 Score=28.46 Aligned_cols=53 Identities=11% Similarity=0.187 Sum_probs=35.8
Q ss_pred hhHHHHHhhhcccccChHHHHHHHHHhcCCCCChHHHHHHHHHhhhhcccccC--CCCCCc
Q 003835 729 VDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERD--KNNPQI 787 (792)
Q Consensus 729 i~AaIVRIMK~rK~l~h~~Li~ev~~~lrF~~~~~~iKk~IE~LIereYl~Rd--~~d~~~ 787 (792)
.+..|...+.....++-.+|... +..+.+.+-+.|..|.++|||+|. +.|+..
T Consensus 53 ~~~~iL~~l~~~~~~t~~ela~~------l~is~~tvs~~l~~Le~~Gli~r~~~~~d~R~ 107 (162)
T 3cjn_A 53 AKMRALAILSAKDGLPIGTLGIF------AVVEQSTLSRALDGLQADGLVRREVDSDDQRS 107 (162)
T ss_dssp HHHHHHHHHHHSCSEEHHHHHHH------HTCCHHHHHHHHHHHHHTTSEEEEEC--CCSS
T ss_pred HHHHHHHHHHHCCCCCHHHHHHH------HCCChhHHHHHHHHHHHCCCEEecCCCCCCCe
Confidence 34455555555566666665443 357888999999999999999994 445543
No 94
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=25.78 E-value=73 Score=28.20 Aligned_cols=48 Identities=8% Similarity=0.258 Sum_probs=33.0
Q ss_pred hhHHHHHhhhcccccChHHHHHHHHHhcCCCCChHHHHHHHHHhhhhcccccCC
Q 003835 729 VDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDK 782 (792)
Q Consensus 729 i~AaIVRIMK~rK~l~h~~Li~ev~~~lrF~~~~~~iKk~IE~LIereYl~Rd~ 782 (792)
-+..|...+.....++-.+|... +..+.+.+-+.|..|.++|||+|.+
T Consensus 38 ~~~~iL~~l~~~~~~~~~ela~~------l~~~~~tvs~~l~~L~~~gli~r~~ 85 (142)
T 2bv6_A 38 PQFLVLTILWDESPVNVKKVVTE------LALDTGTVSPLLKRMEQVDLIKRER 85 (142)
T ss_dssp HHHHHHHHHHHSSEEEHHHHHHH------TTCCTTTHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHcCCcCHHHHHHH------HCCChhhHHHHHHHHHHCCCEEeec
Confidence 34555555555555665554433 3456777899999999999999954
No 95
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=25.72 E-value=62 Score=28.45 Aligned_cols=46 Identities=17% Similarity=0.131 Sum_probs=32.0
Q ss_pred hHHHHHhhhcccccChHHHHHHHHHhcCCCCChHHHHHHHHHhhhhcccccC
Q 003835 730 DAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERD 781 (792)
Q Consensus 730 ~AaIVRIMK~rK~l~h~~Li~ev~~~lrF~~~~~~iKk~IE~LIereYl~Rd 781 (792)
+..|.........++-.+|... +..+.+.+-+.|..|.++|||+|.
T Consensus 40 ~~~iL~~l~~~~~~t~~ela~~------l~~~~~tvs~~l~~L~~~glv~r~ 85 (140)
T 2nnn_A 40 QWAALVRLGETGPCPQNQLGRL------TAMDAATIKGVVERLDKRGLIQRS 85 (140)
T ss_dssp HHHHHHHHHHHSSBCHHHHHHH------TTCCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHcCCCCHHHHHHH------HCCCHHHHHHHHHHHHHCCCEEee
Confidence 3444444444445555554432 567889999999999999999995
No 96
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=25.65 E-value=47 Score=29.67 Aligned_cols=49 Identities=16% Similarity=0.293 Sum_probs=32.5
Q ss_pred hhhHHHHHhhhcccccChHHHHHHHHHhcCCCCChHHHHHHHHHhhhhcccccCC
Q 003835 728 QVDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDK 782 (792)
Q Consensus 728 ~i~AaIVRIMK~rK~l~h~~Li~ev~~~lrF~~~~~~iKk~IE~LIereYl~Rd~ 782 (792)
..+..|..++-....++-.+|-.. +-.+++.+-+.|..|.++|||+|..
T Consensus 37 ~~~~~vL~~l~~~~~~t~~eLa~~------l~~~~~tvs~~l~~L~~~Glv~r~~ 85 (142)
T 3ech_A 37 PPDVHVLKLIDEQRGLNLQDLGRQ------MCRDKALITRKIRELEGRNLVRRER 85 (142)
T ss_dssp HHHHHHHHHHHHTTTCCHHHHHHH------HC---CHHHHHHHHHHHTTSEEC--
T ss_pred HHHHHHHHHHHhCCCcCHHHHHHH------hCCCHHHHHHHHHHHHHCCCEeecc
Confidence 345556666666667776665554 3566777889999999999999954
No 97
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=25.31 E-value=1.1e+02 Score=26.81 Aligned_cols=48 Identities=17% Similarity=0.293 Sum_probs=36.1
Q ss_pred hhHHHHHhhhcccccChHHHHHHHHHhcCCCCChHHHHHHHHHhhhhcccccCC
Q 003835 729 VDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDK 782 (792)
Q Consensus 729 i~AaIVRIMK~rK~l~h~~Li~ev~~~lrF~~~~~~iKk~IE~LIereYl~Rd~ 782 (792)
.+..|...+.....++..+|-.. +..+++.+-+.|..|.++|||+|..
T Consensus 32 ~~~~iL~~l~~~~~~~~~ela~~------l~is~~~vs~~l~~L~~~gli~~~~ 79 (142)
T 3bdd_A 32 TRYSILQTLLKDAPLHQLALQER------LQIDRAAVTRHLKLLEESGYIIRKR 79 (142)
T ss_dssp HHHHHHHHHHHHCSBCHHHHHHH------HTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHhCCCCCHHHHHHH------HCCCHHHHHHHHHHHHHCCCEEecC
Confidence 45556666666666777766554 3578889999999999999999854
No 98
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=24.87 E-value=1e+02 Score=27.40 Aligned_cols=51 Identities=6% Similarity=0.065 Sum_probs=33.1
Q ss_pred hHHHHHhhhcccccChHHHHHHHHHhcCCCCChHHHHHHHHHhhhhcccccC--CCCCC
Q 003835 730 DAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERD--KNNPQ 786 (792)
Q Consensus 730 ~AaIVRIMK~rK~l~h~~Li~ev~~~lrF~~~~~~iKk~IE~LIereYl~Rd--~~d~~ 786 (792)
+..|..++.....++..+|-.. +..+.+.+-+.|..|.++|||+|. +.|+.
T Consensus 44 ~~~iL~~l~~~~~~t~~ela~~------l~~~~~tvs~~l~~Le~~Glv~r~~~~~d~R 96 (150)
T 2rdp_A 44 QFVALQWLLEEGDLTVGELSNK------MYLACSTTTDLVDRMERNGLVARVRDEHDRR 96 (150)
T ss_dssp HHHHHHHHHHHCSBCHHHHHHH------HTCCHHHHHHHHHHHHHTTSEEEEECCC---
T ss_pred HHHHHHHHHHcCCCCHHHHHHH------HCCCchhHHHHHHHHHHCCCeeecCCCCCcc
Confidence 3444444444455665555443 467888999999999999999994 44543
No 99
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=24.80 E-value=1.1e+02 Score=26.43 Aligned_cols=55 Identities=13% Similarity=0.210 Sum_probs=39.1
Q ss_pred hhHHHHHhhhcccccChHHHHHHHHHhcCC-CCChHHHHHHHHHhhhhcccccC--CCCCCceee
Q 003835 729 VDAAIVRIMKTRKVLSHTLLITELFQQLKF-PIKPADLKKRIESLIDREYLERD--KNNPQIYNY 790 (792)
Q Consensus 729 i~AaIVRIMK~rK~l~h~~Li~ev~~~lrF-~~~~~~iKk~IE~LIereYl~Rd--~~d~~~Y~Y 790 (792)
....|.+.+. ...++..+|... . ..+.+.+-+.+..|.++|||+|. +.|+....|
T Consensus 23 ~~~~IL~~L~-~~~~~~~eLa~~------l~~is~~tvs~~L~~Le~~GlI~r~~~~~d~r~~~~ 80 (112)
T 1z7u_A 23 WKLSLMDELF-QGTKRNGELMRA------LDGITQRVLTDRLREMEKDGLVHRESFNELPPRVEY 80 (112)
T ss_dssp THHHHHHHHH-HSCBCHHHHHHH------STTCCHHHHHHHHHHHHHHTSEEEEEECCSSCEEEE
T ss_pred cHHHHHHHHH-hCCCCHHHHHHH------hccCCHHHHHHHHHHHHHCCCEEEeecCCCCCeEEE
Confidence 3445666555 367787776554 4 67899999999999999999994 445554443
No 100
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=24.64 E-value=41 Score=30.26 Aligned_cols=34 Identities=6% Similarity=0.071 Sum_probs=29.6
Q ss_pred ccHHHHHHHhCCCHHHHHHHHHHhhcCCceeeecCC
Q 003835 641 LSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLP 676 (792)
Q Consensus 641 lt~~eI~~~T~i~~~eL~r~L~sL~~~k~kiL~k~p 676 (792)
.|.++|++.+|++..++.+.|..|. +-+++.+.+
T Consensus 52 ps~~~LA~~l~~s~~~V~~~l~~Le--~kGlI~~~~ 85 (128)
T 2vn2_A 52 PTPAELAERMTVSAAECMEMVRRLL--QKGMIAIEE 85 (128)
T ss_dssp CCHHHHHHTSSSCHHHHHHHHHHHH--HTTSSEECC
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEEEe
Confidence 5899999999999999999999999 666666644
No 101
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=24.58 E-value=57 Score=27.33 Aligned_cols=34 Identities=9% Similarity=0.297 Sum_probs=29.1
Q ss_pred ccHHHHHHHhCCCHHHHHHHHHHhhcCCceeeecCC
Q 003835 641 LSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLP 676 (792)
Q Consensus 641 lt~~eI~~~T~i~~~eL~r~L~sL~~~k~kiL~k~p 676 (792)
+|..||++.+|++...+.+.|..|. +.+++.+.+
T Consensus 37 ~t~~ela~~l~is~~tv~~~l~~L~--~~g~v~~~~ 70 (109)
T 2d1h_A 37 ITSEELADIFKLSKTTVENSLKKLI--ELGLVVRTK 70 (109)
T ss_dssp EEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEEE
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHH--HCCCeEeec
Confidence 7899999999999999999999998 566665543
No 102
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=24.42 E-value=36 Score=28.24 Aligned_cols=33 Identities=9% Similarity=0.193 Sum_probs=27.3
Q ss_pred ccHHHHHHHhCCCHH-HHHHHHHHhhcCCceeeecC
Q 003835 641 LSFQDIKDATGIEDK-ELRRTLQSLACGKVRVLQKL 675 (792)
Q Consensus 641 lt~~eI~~~T~i~~~-eL~r~L~sL~~~k~kiL~k~ 675 (792)
.|..+|++..||+.. .++++|..|. +-.++.+.
T Consensus 26 ~ta~eiA~~Lgit~~~aVr~hL~~Le--~eGlV~~~ 59 (79)
T 1xmk_A 26 SSALNLAKNIGLTKARDINAVLIDME--RQGDVYRQ 59 (79)
T ss_dssp EEHHHHHHHHCGGGHHHHHHHHHHHH--HTTSEEEE
T ss_pred cCHHHHHHHcCCCcHHHHHHHHHHHH--HCCCEEec
Confidence 688999999999998 9999999998 44444443
No 103
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=24.24 E-value=87 Score=28.66 Aligned_cols=52 Identities=15% Similarity=0.156 Sum_probs=38.9
Q ss_pred HHHHHhhhcccccChHHHHHHHHHhcCCCCChHHHHHHHHHhhhhcccccC--CCCCCceee
Q 003835 731 AAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERD--KNNPQIYNY 790 (792)
Q Consensus 731 AaIVRIMK~rK~l~h~~Li~ev~~~lrF~~~~~~iKk~IE~LIereYl~Rd--~~d~~~Y~Y 790 (792)
..|++.+. ...++..+|...+ -.+...+-+++..|.+.++|+|. +.|+ ...|
T Consensus 27 l~IL~~L~-~g~~~~~eLa~~l------gis~~tls~~L~~Le~~GlI~r~~~~~d~-~~~y 80 (146)
T 2f2e_A 27 MLIVRDAF-EGLTRFGEFQKSL------GLAKNILAARLRNLVEHGVMVAVPAESGS-HQEY 80 (146)
T ss_dssp HHHHHHHH-TTCCSHHHHHHHH------CCCHHHHHHHHHHHHHTTSEEEEECSSSS-CEEE
T ss_pred HHHHHHHH-hCCCCHHHHHHHh------CCCHHHHHHHHHHHHHCCCEEEEecCCCC-eEEE
Confidence 34666664 5678888776543 67889999999999999999994 4466 5555
No 104
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=24.22 E-value=66 Score=29.29 Aligned_cols=48 Identities=10% Similarity=0.258 Sum_probs=33.9
Q ss_pred hhHHHHHhhhcccccChHHHHHHHHHhcCCCCChHHHHHHHHHhhhhcccccCC
Q 003835 729 VDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDK 782 (792)
Q Consensus 729 i~AaIVRIMK~rK~l~h~~Li~ev~~~lrF~~~~~~iKk~IE~LIereYl~Rd~ 782 (792)
.+..|...+.....++-.+|-.. +..+.+.+-+.|..|.+++||+|..
T Consensus 50 ~~~~iL~~l~~~~~~t~~ela~~------l~is~~tvs~~l~~Le~~glv~r~~ 97 (162)
T 2fa5_A 50 PEWRVITILALYPGSSASEVSDR------TAMDKVAVSRAVARLLERGFIRRET 97 (162)
T ss_dssp HHHHHHHHHHHSTTCCHHHHHHH------HTCCHHHHHHHHHHHHHTTSEEC--
T ss_pred HHHHHHHHHHhCCCCCHHHHHHH------HCCCHHHHHHHHHHHHHCCCEeeec
Confidence 34555555555666766665543 3578888999999999999999953
No 105
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=24.05 E-value=46 Score=29.03 Aligned_cols=33 Identities=24% Similarity=0.493 Sum_probs=28.5
Q ss_pred ccHHHHHHHh-CCCHHHHHHHHHHhhcCCceeeecC
Q 003835 641 LSFQDIKDAT-GIEDKELRRTLQSLACGKVRVLQKL 675 (792)
Q Consensus 641 lt~~eI~~~T-~i~~~eL~r~L~sL~~~k~kiL~k~ 675 (792)
+|+.||++.+ ||+..-|.++|..|. +.+++.+.
T Consensus 43 ~~~~eL~~~l~gis~~~ls~~L~~Le--~~GlV~r~ 76 (111)
T 3df8_A 43 QNFNDIRSSIPGISSTILSRRIKDLI--DSGLVERR 76 (111)
T ss_dssp BCHHHHHHTSTTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCHHHHHHHccCCCHHHHHHHHHHHH--HCCCEEEe
Confidence 3499999999 999999999999998 66777653
No 106
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=24.03 E-value=29 Score=39.88 Aligned_cols=118 Identities=12% Similarity=0.130 Sum_probs=36.1
Q ss_pred ccHHHHHHHhCCCHHHHHHHHHHhhcC---CceeeecCCCCCCCCCCCeEEEccCCCCCceeEEecccccccchhhhhhh
Q 003835 641 LSFQDIKDATGIEDKELRRTLQSLACG---KVRVLQKLPKGRDVEDDDSFVFNEGFTAPLYRIKVNAIQMKETVEENTST 717 (792)
Q Consensus 641 lt~~eI~~~T~i~~~eL~r~L~sL~~~---k~kiL~k~p~~~~i~~~d~f~~N~~Ft~~~~riki~~i~~ket~~e~~~t 717 (792)
+|..+|++.+|++....++.|..|... ...++... |..|.++......... ..+....
T Consensus 445 it~~~la~~l~~s~~~~~~~L~~L~~~~~~~~glie~~--------g~~y~L~~~~~~~~~~-----------~~~~~~~ 505 (583)
T 3lmm_A 445 ITIDVVARGLQSGKEAARNALEAARQTTVAGAPLIIAH--------DGVWLLGNACREILRK-----------VEPSPFS 505 (583)
T ss_dssp BCHHHHHHHHTSCHHHHHHHHHHHHTCEETTEESEEEE--------TTEEEECHHHHHHHTS-----------CC-----
T ss_pred cCHHHHHHHhCcCHHHHHHHHHHHHhhhccccceEEEe--------CCEEEECHHHHHHhcc-----------ccccccc
Confidence 899999999999999999999999731 15566552 3578887753211000 0000000
Q ss_pred ---hHHHHhhhhhhhhHHHHHhhhcccccChHHHHHHHHHhcCCCCChHHHHHHHHHhhhhcccccCCCCCC
Q 003835 718 ---TERVFQDRQYQVDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQ 786 (792)
Q Consensus 718 ---~e~v~~dR~~~i~AaIVRIMK~rK~l~h~~Li~ev~~~lrF~~~~~~iKk~IE~LIereYl~Rd~~d~~ 786 (792)
...+ -....+..|...+|.+..++-.++..- +-.++...++.|..|++++-|++....+.
T Consensus 506 ~~~~~~~---~~~~~~~~I~~~l~~~g~it~~di~~l------~~ls~~qa~~~L~~Lv~~G~l~~~G~gr~ 568 (583)
T 3lmm_A 506 PVRYLST---DQAELTNAAMLWLSEVGDLATSDLMAM------CGVSRGTAKACVDGLVDEERVVAVGGGRS 568 (583)
T ss_dssp ------------------------------------------------------------------------
T ss_pred ccccccC---ChhHHHHHHHHHHHHcCCcCHHHHHHH------HCCCHHHHHHHHHHHHHCCcEEEeCCCCc
Confidence 0001 023456679999999999888875542 23667778999999999999999766554
No 107
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=23.86 E-value=44 Score=29.39 Aligned_cols=35 Identities=9% Similarity=0.082 Sum_probs=29.5
Q ss_pred ccHHHHHHHhCCCHHHHHHHHHHhhcCCceeeecCCC
Q 003835 641 LSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLPK 677 (792)
Q Consensus 641 lt~~eI~~~T~i~~~eL~r~L~sL~~~k~kiL~k~p~ 677 (792)
+++.||++.+|++...+.++|..|. ..+++.....
T Consensus 35 ~~~~eLa~~lgis~stvs~~L~~L~--~~GlV~~~~~ 69 (118)
T 2jsc_A 35 CYPGQLAAHLGLTRSNVSNHLSCLR--GCGLVVATYE 69 (118)
T ss_dssp CSTTTHHHHHSSCHHHHHHHHHHHT--TTTSEEEEEC
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHH--HCCceEEEEE
Confidence 5778999999999999999999998 6777765443
No 108
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=23.82 E-value=61 Score=30.06 Aligned_cols=48 Identities=15% Similarity=0.209 Sum_probs=33.8
Q ss_pred hhHHHHHhhhc-ccccChHHHHHHHHHhcCCCCChHHHHHHHHHhhhhcccccCC
Q 003835 729 VDAAIVRIMKT-RKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDK 782 (792)
Q Consensus 729 i~AaIVRIMK~-rK~l~h~~Li~ev~~~lrF~~~~~~iKk~IE~LIereYl~Rd~ 782 (792)
.+..|...+.. ...++-.+|... +..+.+.+-+.|..|.++|||+|..
T Consensus 54 ~q~~vL~~L~~~~~~~t~~eLa~~------l~i~~~tvs~~l~~Le~~GlV~r~~ 102 (166)
T 3deu_A 54 THWVTLHNIHQLPPDQSQIQLAKA------IGIEQPSLVRTLDQLEDKGLISRQT 102 (166)
T ss_dssp HHHHHHHHHHHSCSSEEHHHHHHH------HTSCHHHHHHHHHHHHHTTSEEEC-
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHH------HCCCHhhHHHHHHHHHHCCCEEeeC
Confidence 34455555544 455666665443 3578899999999999999999954
No 109
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=23.59 E-value=1.2e+02 Score=25.58 Aligned_cols=45 Identities=9% Similarity=0.181 Sum_probs=33.1
Q ss_pred hHHHHHhhhc--ccccChHHHHHHHHHhcCCCCChHHHHHHHHHhhhhccccc
Q 003835 730 DAAIVRIMKT--RKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLER 780 (792)
Q Consensus 730 ~AaIVRIMK~--rK~l~h~~Li~ev~~~lrF~~~~~~iKk~IE~LIereYl~R 780 (792)
|..|-++... .+-+...+|-.+ ...+.+.+-++|..|.+++||+|
T Consensus 22 q~~Vl~~I~~~g~~gi~qkeLa~~------~~l~~~tvt~iLk~LE~kglIkr 68 (91)
T 2dk5_A 22 EKLVYQIIEDAGNKGIWSRDVRYK------SNLPLTEINKILKNLESKKLIKA 68 (91)
T ss_dssp HHHHHHHHHHHCTTCEEHHHHHHH------TTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHcCCCCcCHHHHHHH------HCCCHHHHHHHHHHHHHCCCEEE
Confidence 3445555555 446776666554 56788889999999999999995
No 110
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=23.52 E-value=50 Score=33.53 Aligned_cols=45 Identities=11% Similarity=0.333 Sum_probs=36.3
Q ss_pred ccHHHHHHHhCCCHHHHHHHHHHhhcCCceeeecCCCCCCCCCCCeEEEccCC
Q 003835 641 LSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLPKGRDVEDDDSFVFNEGF 693 (792)
Q Consensus 641 lt~~eI~~~T~i~~~eL~r~L~sL~~~k~kiL~k~p~~~~i~~~d~f~~N~~F 693 (792)
+|+.||++.+|+|...+.|.|.+|. ....+.+.+. +..|.+...+
T Consensus 22 lsl~eia~~lgl~ksT~~RlL~tL~--~~G~v~~~~~------~~~Y~lG~~~ 66 (260)
T 3r4k_A 22 IGLSDLTRLSGMNKATVYRLMSELQ--EAGFVEQVEG------ARSYRLGPQV 66 (260)
T ss_dssp EEHHHHHHHHCSCHHHHHHHHHHHH--HTTSEEECSS------SSEEEECTTH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEEcCC------CCcEEcCHHH
Confidence 7999999999999999999999999 7778877653 2456555543
No 111
>3k6t_A Female germline-specific tumor suppressor GLD-1; QUA1 homodimerization domain, helix-turn-helix motif, hydrophobic homodimer interface; 2.04A {Caenorhabditis elegans} PDB: 3kbl_A
Probab=23.50 E-value=44 Score=26.20 Aligned_cols=38 Identities=24% Similarity=0.223 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHHHHhcc
Q 003835 284 TSEFYAAEGMKYMQQSDVPDYLKHVEIRLHEEHERCLL 321 (792)
Q Consensus 284 T~~yY~~es~~~l~~~s~~eYL~~ve~~l~eE~~R~~~ 321 (792)
|.+|-.+.-....+-.+.+.-..|++..+.+|..|++.
T Consensus 6 ~~eYL~qLlkdKk~l~~~p~~f~HlerLLdeEI~RVR~ 43 (60)
T 3k6t_A 6 TVEYLADLVKEKKHLTLFPHMFSNVERLLDDEIGRVRV 43 (60)
T ss_dssp CHHHHHHHHHHHHHHTTSTTTCHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHH
Confidence 45555555544444455667778899999999998764
No 112
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=23.48 E-value=80 Score=26.74 Aligned_cols=25 Identities=16% Similarity=0.335 Sum_probs=24.1
Q ss_pred ccHHHHHHHhCCCHHHHHHHHHHhh
Q 003835 641 LSFQDIKDATGIEDKELRRTLQSLA 665 (792)
Q Consensus 641 lt~~eI~~~T~i~~~eL~r~L~sL~ 665 (792)
++..||++.++++...+.+.|..|.
T Consensus 37 i~qkeLa~~~~l~~~tvt~iLk~LE 61 (91)
T 2dk5_A 37 IWSRDVRYKSNLPLTEINKILKNLE 61 (91)
T ss_dssp EEHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 7889999999999999999999998
No 113
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=23.45 E-value=75 Score=29.14 Aligned_cols=53 Identities=9% Similarity=0.093 Sum_probs=40.8
Q ss_pred hhHHHHHhhhcccccChHHHHHHHHHhcCCCCChHHHHHHHHHhhhhcccccCC
Q 003835 729 VDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDK 782 (792)
Q Consensus 729 i~AaIVRIMK~rK~l~h~~Li~ev~~~lrF~~~~~~iKk~IE~LIereYl~Rd~ 782 (792)
-.-+|.+++....-++..+|..++.+.. ..++.+.|=+.++.|.+.+.|.|-.
T Consensus 20 qR~~Il~~l~~~~h~ta~ei~~~l~~~~-~~is~~TVYR~L~~L~e~Glv~~i~ 72 (145)
T 3eyy_A 20 QRQLVLEAVDTLEHATPDDILGEVRKTA-SGINISTVYRTLELLEELGLVSHAH 72 (145)
T ss_dssp HHHHHHHHHHHHSSBCHHHHHHHHHTTC-TTCCHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHhhC-CCCCHhHHHHHHHHHHHCCcEEEEE
Confidence 3456667776666888888877765442 4679999999999999999999943
No 114
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=23.40 E-value=73 Score=28.46 Aligned_cols=48 Identities=13% Similarity=0.277 Sum_probs=34.9
Q ss_pred hhHHHHHhhhcccccChHHHHHHHHHhcCCCCChHHHHHHHHHhhhhcccccCC
Q 003835 729 VDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDK 782 (792)
Q Consensus 729 i~AaIVRIMK~rK~l~h~~Li~ev~~~lrF~~~~~~iKk~IE~LIereYl~Rd~ 782 (792)
.+..|.........++-.+|-.. +-.+++.+-+.|..|.++|||+|..
T Consensus 41 ~~~~iL~~l~~~~~~t~~ela~~------l~~~~~tvs~~l~~Le~~Glv~r~~ 88 (148)
T 3nrv_A 41 TEWRIISVLSSASDCSVQKISDI------LGLDKAAVSRTVKKLEEKKYIEVNG 88 (148)
T ss_dssp HHHHHHHHHHHSSSBCHHHHHHH------HTCCHHHHHHHHHHHHHTTSEEC--
T ss_pred HHHHHHHHHHcCCCCCHHHHHHH------HCCCHHHHHHHHHHHHHCCCEEeec
Confidence 44556666666667777776554 3578889999999999999999863
No 115
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=23.40 E-value=40 Score=29.02 Aligned_cols=33 Identities=9% Similarity=0.228 Sum_probs=28.5
Q ss_pred ccHHHHHHHhCCCHHHHHHHHHHhhcCCceeeecC
Q 003835 641 LSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKL 675 (792)
Q Consensus 641 lt~~eI~~~T~i~~~eL~r~L~sL~~~k~kiL~k~ 675 (792)
+|..||++.+|++...+.++|..|. +.+++.+.
T Consensus 35 ~~~~ela~~l~is~~tv~~~l~~L~--~~gli~~~ 67 (114)
T 2oqg_A 35 QSASSLATRLPVSRQAIAKHLNALQ--ACGLVESV 67 (114)
T ss_dssp BCHHHHHHHSSSCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHH--HCCCeeEE
Confidence 6899999999999999999999998 66666543
No 116
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=23.32 E-value=71 Score=29.59 Aligned_cols=46 Identities=17% Similarity=0.366 Sum_probs=38.5
Q ss_pred hhHHHHHhhhcccccChHHHHHHHHHhcCCCCChHHHHHHHHHhhhhccccc
Q 003835 729 VDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLER 780 (792)
Q Consensus 729 i~AaIVRIMK~rK~l~h~~Li~ev~~~lrF~~~~~~iKk~IE~LIereYl~R 780 (792)
++-.|.+.+.....++..+|-.++ -.+++.+.++|..|.+++||+|
T Consensus 11 ~~~~il~~L~~~~~~s~~ela~~l------g~s~~tv~~~l~~L~~~G~i~~ 56 (162)
T 2p5v_A 11 TDIKILQVLQENGRLTNVELSERV------ALSPSPCLRRLKQLEDAGIVRQ 56 (162)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHH------TSCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHH------CcCHHHHHHHHHHHHHCCCEee
Confidence 455688888888889988877654 5688999999999999999997
No 117
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=23.30 E-value=33 Score=30.14 Aligned_cols=34 Identities=3% Similarity=0.083 Sum_probs=29.4
Q ss_pred ccHHHHHHHhCCCHHHHHHHHHHhhcCCceeeecCC
Q 003835 641 LSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLP 676 (792)
Q Consensus 641 lt~~eI~~~T~i~~~eL~r~L~sL~~~k~kiL~k~p 676 (792)
+|+.||++.+|++...+.++|..|. +.+++...+
T Consensus 32 ~~~~eLa~~l~is~~tvs~hL~~L~--~~GlV~~~~ 65 (118)
T 3f6o_A 32 ATVSELAKPFDMALPSFMKHIHFLE--DSGWIRTHK 65 (118)
T ss_dssp EEHHHHHTTCCSCHHHHHHHHHHHH--HTTSEEEEE
T ss_pred CCHHHHHHHhCcCHHHHHHHHHHHH--HCCCeEEEe
Confidence 6889999999999999999999998 667776543
No 118
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=23.16 E-value=60 Score=29.49 Aligned_cols=48 Identities=10% Similarity=0.129 Sum_probs=31.5
Q ss_pred hhHHHHHhh-hcccccChHHHHHHHHHhcCCCCChHHHHHHHHHhhhhcccccCC
Q 003835 729 VDAAIVRIM-KTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDK 782 (792)
Q Consensus 729 i~AaIVRIM-K~rK~l~h~~Li~ev~~~lrF~~~~~~iKk~IE~LIereYl~Rd~ 782 (792)
.+..|..++ .....++..+|... ...+.+.+-+.|..|.++|||+|..
T Consensus 48 ~~~~iL~~L~~~~~~~~~~ela~~------l~i~~~tvs~~l~~Le~~Gli~r~~ 96 (160)
T 3boq_A 48 AKFDAMAQLARNPDGLSMGKLSGA------LKVTNGNVSGLVNRLIKDGMVVKAM 96 (160)
T ss_dssp HHHHHHHHHHHCTTCEEHHHHHHH------CSSCCSCHHHHHHHHHHHTSEEEC-
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHH------HCCChhhHHHHHHHHHHCCCEEeec
Confidence 344455555 34455555554332 4566777889999999999999953
No 119
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=23.11 E-value=67 Score=28.95 Aligned_cols=47 Identities=11% Similarity=0.113 Sum_probs=33.0
Q ss_pred hHHHHHhhhcccccChHHHHHHHHHhcCCCCChHHHHHHHHHhhhhcccccCC
Q 003835 730 DAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDK 782 (792)
Q Consensus 730 ~AaIVRIMK~rK~l~h~~Li~ev~~~lrF~~~~~~iKk~IE~LIereYl~Rd~ 782 (792)
+..|...+.....++-.+|... +..+.+.+-+.|..|.+++||+|..
T Consensus 49 ~~~iL~~l~~~~~~t~~ela~~------l~~s~~tvs~~l~~Le~~glv~r~~ 95 (153)
T 2pex_A 49 QYLVMLVLWETDERSVSEIGER------LYLDSATLTPLLKRLQAAGLVTRTR 95 (153)
T ss_dssp HHHHHHHHHHSCSEEHHHHHHH------HTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHhCCCcCHHHHHHH------hCCCcccHHHHHHHHHHCCCEeecC
Confidence 3444455544555665555443 3578899999999999999999954
No 120
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=23.05 E-value=56 Score=29.95 Aligned_cols=32 Identities=25% Similarity=0.275 Sum_probs=28.7
Q ss_pred cHHHHHHHhCCCHHHHHHHHHHhhcCCceeeecC
Q 003835 642 SFQDIKDATGIEDKELRRTLQSLACGKVRVLQKL 675 (792)
Q Consensus 642 t~~eI~~~T~i~~~eL~r~L~sL~~~k~kiL~k~ 675 (792)
|.++|++.+++|...|.+.|..|. +..++...
T Consensus 25 s~~~IA~~~~i~~~~l~kIl~~L~--~aGlv~s~ 56 (145)
T 1xd7_A 25 SSEIIADSVNTNPVVVRRMISLLK--KADILTSR 56 (145)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHHHH--HTTSEECC
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHH--HCCceEee
Confidence 689999999999999999999998 88887643
No 121
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=22.86 E-value=77 Score=28.72 Aligned_cols=46 Identities=20% Similarity=0.327 Sum_probs=38.5
Q ss_pred hhHHHHHhhhcccccChHHHHHHHHHhcCCCCChHHHHHHHHHhhhhccccc
Q 003835 729 VDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLER 780 (792)
Q Consensus 729 i~AaIVRIMK~rK~l~h~~Li~ev~~~lrF~~~~~~iKk~IE~LIereYl~R 780 (792)
+|-.|.+.+.....++..+|-.++ -.+++.+.++|..|.++++|+|
T Consensus 6 ~d~~il~~L~~~~~~s~~ela~~l------g~s~~tv~~~l~~L~~~G~i~~ 51 (144)
T 2cfx_A 6 IDLNIIEELKKDSRLSMRELGRKI------KLSPPSVTERVRQLESFGIIKQ 51 (144)
T ss_dssp HHHHHHHHHHHCSCCCHHHHHHHH------TCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHH------CcCHHHHHHHHHHHHHCCCeEE
Confidence 455788888888889988876654 5788999999999999999997
No 122
>2pq8_A Probable histone acetyltransferase MYST1; MOF, structural genomics, structural genomics consortium, SGC; HET: COA; 1.45A {Homo sapiens} PDB: 2giv_A* 3qah_A* 2y0m_A* 3toa_A* 3tob_A*
Probab=22.49 E-value=38 Score=34.92 Aligned_cols=26 Identities=38% Similarity=0.552 Sum_probs=22.3
Q ss_pred cccHHHHHHHhCCCHHHHHHHHHHhh
Q 003835 640 QLSFQDIKDATGIEDKELRRTLQSLA 665 (792)
Q Consensus 640 Qlt~~eI~~~T~i~~~eL~r~L~sL~ 665 (792)
++|++||+++|||..+|+..+|+.|-
T Consensus 208 ~isi~~is~~T~i~~~Dii~tL~~l~ 233 (278)
T 2pq8_A 208 TLSIKDLSQMTSITQNDIISTLQSLN 233 (278)
T ss_dssp ---CHHHHHHHCBCHHHHHHHHHHTT
T ss_pred CccHHHHHHHhCCCHHHHHHHHHHCC
Confidence 38999999999999999999999995
No 123
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=22.48 E-value=86 Score=28.45 Aligned_cols=46 Identities=24% Similarity=0.318 Sum_probs=39.3
Q ss_pred hhHHHHHhhhcccccChHHHHHHHHHhcCCCCChHHHHHHHHHhhhhccccc
Q 003835 729 VDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLER 780 (792)
Q Consensus 729 i~AaIVRIMK~rK~l~h~~Li~ev~~~lrF~~~~~~iKk~IE~LIereYl~R 780 (792)
++-.|.+.+.....++..+|-.++ -.+++.+-++|..|.++|+|+|
T Consensus 4 ~~~~il~~L~~~~~~~~~ela~~l------g~s~~tv~~~l~~L~~~G~i~~ 49 (150)
T 2pn6_A 4 IDLRILKILQYNAKYSLDEIAREI------RIPKATLSYRIKKLEKDGVIKG 49 (150)
T ss_dssp HHHHHHHHHTTCTTSCHHHHHHHH------TSCHHHHHHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHH------CcCHHHHHHHHHHHHHCCcEEE
Confidence 566788888888889988877654 5789999999999999999998
No 124
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=21.93 E-value=82 Score=29.76 Aligned_cols=47 Identities=13% Similarity=0.283 Sum_probs=40.2
Q ss_pred hhhHHHHHhhhcccccChHHHHHHHHHhcCCCCChHHHHHHHHHhhhhccccc
Q 003835 728 QVDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLER 780 (792)
Q Consensus 728 ~i~AaIVRIMK~rK~l~h~~Li~ev~~~lrF~~~~~~iKk~IE~LIereYl~R 780 (792)
.+|-.|++.+.....++..+|-.++ -.++..+.++|..|.+.++|+|
T Consensus 27 ~~d~~IL~~L~~~~~~s~~eLA~~l------glS~~tv~~rl~~L~~~G~I~~ 73 (171)
T 2e1c_A 27 EIDKKIIKILQNDGKAPLREISKIT------GLAESTIHERIRKLRESGVIKK 73 (171)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHH------TSCHHHHHHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH------CcCHHHHHHHHHHHHHCCCeEe
Confidence 3566788888888899998877764 5789999999999999999998
No 125
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=21.65 E-value=81 Score=28.81 Aligned_cols=46 Identities=13% Similarity=0.262 Sum_probs=39.3
Q ss_pred hhHHHHHhhhcccccChHHHHHHHHHhcCCCCChHHHHHHHHHhhhhccccc
Q 003835 729 VDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLER 780 (792)
Q Consensus 729 i~AaIVRIMK~rK~l~h~~Li~ev~~~lrF~~~~~~iKk~IE~LIereYl~R 780 (792)
+|..|.+.+.....++..+|-.++ -.+++.+.++|..|.++|+|+|
T Consensus 9 ~d~~il~~L~~~~~~s~~ela~~l------g~s~~tv~~~l~~L~~~G~i~~ 54 (152)
T 2cg4_A 9 LDRGILEALMGNARTAYAELAKQF------GVSPETIHVRVEKMKQAGIITG 54 (152)
T ss_dssp HHHHHHHHHHHCTTSCHHHHHHHH------TSCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHH------CcCHHHHHHHHHHHHHcCCcce
Confidence 466788888888889998877664 5788999999999999999998
No 126
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=21.54 E-value=92 Score=27.67 Aligned_cols=47 Identities=6% Similarity=0.160 Sum_probs=32.6
Q ss_pred hHHHHHhhhcccccChHHHHHHHHHhcCCCCChHHHHHHHHHhhhhcccccCC
Q 003835 730 DAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDK 782 (792)
Q Consensus 730 ~AaIVRIMK~rK~l~h~~Li~ev~~~lrF~~~~~~iKk~IE~LIereYl~Rd~ 782 (792)
+..|..++-....++..+|.. .+..+.+.+-+.|..|.++|||+|.+
T Consensus 42 ~~~iL~~l~~~~~~~~~~la~------~l~~~~~tvs~~l~~L~~~glv~r~~ 88 (147)
T 1z91_A 42 QYLALLLLWEHETLTVKKMGE------QLYLDSGTLTPMLKRMEQQGLITRKR 88 (147)
T ss_dssp HHHHHHHHHHHSEEEHHHHHH------TTTCCHHHHHHHHHHHHHHTSEECCB
T ss_pred HHHHHHHHHHCCCCCHHHHHH------HHCCCcCcHHHHHHHHHHCCCEEecc
Confidence 344444444444555544443 35778999999999999999999954
No 127
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=21.48 E-value=84 Score=30.52 Aligned_cols=47 Identities=17% Similarity=0.046 Sum_probs=31.4
Q ss_pred hHHHHHhhhcccccChHHHHHHHHHhcCCCCChHHHHHHHHHhhhhcccccCC
Q 003835 730 DAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDK 782 (792)
Q Consensus 730 ~AaIVRIMK~rK~l~h~~Li~ev~~~lrF~~~~~~iKk~IE~LIereYl~Rd~ 782 (792)
+..|..++.....++..+|... +..+.+.+-+.|..|.++|||+|..
T Consensus 50 q~~iL~~L~~~~~~t~~eLa~~------l~i~~stvs~~l~~Le~~GlV~r~~ 96 (207)
T 2fxa_A 50 EHHILWIAYQLNGASISEIAKF------GVMHVSTAFNFSKKLEERGYLRFSK 96 (207)
T ss_dssp HHHHHHHHHHHTSEEHHHHHHH------TTCCHHHHHHHHHHHHHHTSEEEEC
T ss_pred HHHHHHHHHHCCCcCHHHHHHH------HCCCHHHHHHHHHHHHHCCCEEEec
Confidence 3334444444444444443332 5678999999999999999999954
No 128
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=21.30 E-value=77 Score=26.77 Aligned_cols=33 Identities=3% Similarity=0.134 Sum_probs=27.9
Q ss_pred ccHHHHHHHhCCCHHHHHHHHHHhhcCCceeeecC
Q 003835 641 LSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKL 675 (792)
Q Consensus 641 lt~~eI~~~T~i~~~eL~r~L~sL~~~k~kiL~k~ 675 (792)
+|++||++.+++++..++|-|.-|. +-..|.+.
T Consensus 17 vsv~eLA~~l~VS~~TIRrDL~~Le--~~G~l~R~ 49 (87)
T 2k02_A 17 MEAKQLSARLQTPQPLIDAMLERME--AMGKVVRI 49 (87)
T ss_dssp EEHHHHHHHTTCCHHHHHHHHHHHH--TTCCSEEE
T ss_pred CcHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEEE
Confidence 7999999999999999999999998 44444443
No 129
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=21.23 E-value=48 Score=27.71 Aligned_cols=45 Identities=7% Similarity=0.090 Sum_probs=33.7
Q ss_pred hhccc-ccChHHHHHHHHHhcCCCCChHH-HHHHHHHhhhhcccccCCCCCCc
Q 003835 737 MKTRK-VLSHTLLITELFQQLKFPIKPAD-LKKRIESLIDREYLERDKNNPQI 787 (792)
Q Consensus 737 MK~rK-~l~h~~Li~ev~~~lrF~~~~~~-iKk~IE~LIereYl~Rd~~d~~~ 787 (792)
+.... .++..+|... +-.+++. +-+.|..|.+++||++++.|+..
T Consensus 24 l~~~~~~~t~~eLa~~------l~is~~t~vs~~l~~Le~~Glv~~~~~drR~ 70 (95)
T 2pg4_A 24 FEKKGYEPSLAEIVKA------SGVSEKTFFMGLKDRLIRAGLVKEETLSYRV 70 (95)
T ss_dssp HHHTTCCCCHHHHHHH------HCCCHHHHHTTHHHHHHHTTSEEEEEEETTE
T ss_pred HHhcCCCCCHHHHHHH------HCCCchHHHHHHHHHHHHCCCeecCCCCCCe
Confidence 33444 6777776554 3467888 99999999999999988777653
No 130
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=21.22 E-value=1.5e+02 Score=26.02 Aligned_cols=56 Identities=13% Similarity=0.065 Sum_probs=38.7
Q ss_pred hhHHHHHhhhcccccChHHHHHHHHHhcCCCCChHHHHHHHHHhhhhcccccCCCCCCceee
Q 003835 729 VDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQIYNY 790 (792)
Q Consensus 729 i~AaIVRIMK~rK~l~h~~Li~ev~~~lrF~~~~~~iKk~IE~LIereYl~Rd~~d~~~Y~Y 790 (792)
....|++.+.....++..+|...+ -.+.+.+-+.+..|.+.|++++..+++..|.+
T Consensus 43 ~rl~IL~~L~~~~~~s~~eLa~~l------~is~stvs~~L~~L~~~Glv~~~~~gr~~~y~ 98 (122)
T 1u2w_A 43 NRAKITYALCQDEELCVCDIANIL------GVTIANASHHLRTLYKQGVVNFRKEGKLALYS 98 (122)
T ss_dssp HHHHHHHHHHHSSCEEHHHHHHHH------TCCHHHHHHHHHHHHHTTSEEEC----CCEEE
T ss_pred HHHHHHHHHHHCCCcCHHHHHHHH------CcCHHHHHHHHHHHHHCCCeEEEEECCEEEEE
Confidence 344577777766777777765543 56788899999999999999987766655543
No 131
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=21.17 E-value=97 Score=27.67 Aligned_cols=47 Identities=13% Similarity=0.148 Sum_probs=33.3
Q ss_pred hHHHHHhhhcccccChHHHHHHHHHhcCCCCChHHHHHHHHHhhhhcccccCC
Q 003835 730 DAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDK 782 (792)
Q Consensus 730 ~AaIVRIMK~rK~l~h~~Li~ev~~~lrF~~~~~~iKk~IE~LIereYl~Rd~ 782 (792)
+..|...+.....++..+|-.. +..+.+.+-+.|..|.++|||+|..
T Consensus 42 ~~~iL~~l~~~~~~t~~ela~~------l~~~~~~vs~~l~~Le~~Glv~r~~ 88 (152)
T 3bj6_A 42 QRAILEGLSLTPGATAPQLGAA------LQMKRQYISRILQEVQRAGLIERRT 88 (152)
T ss_dssp HHHHHHHHHHSTTEEHHHHHHH------HTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHhCCCCCHHHHHHH------HCCCHHHHHHHHHHHHHCCCeeecC
Confidence 4445555555555665555443 3567888999999999999999954
No 132
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=21.15 E-value=71 Score=28.12 Aligned_cols=48 Identities=15% Similarity=0.153 Sum_probs=34.8
Q ss_pred hhHHHHHhhhcccccChHHHHHHHHHhcCCCCChHHHHHHHHHhhhhcccccCC
Q 003835 729 VDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDK 782 (792)
Q Consensus 729 i~AaIVRIMK~rK~l~h~~Li~ev~~~lrF~~~~~~iKk~IE~LIereYl~Rd~ 782 (792)
.+..|...+.....++..+|... +..+.+.+-+.|..|.+++||+|.+
T Consensus 37 ~~~~iL~~l~~~~~~t~~ela~~------l~~s~~~vs~~l~~Le~~glv~r~~ 84 (142)
T 2fbi_A 37 QQWRVIRILRQQGEMESYQLANQ------ACILRPSMTGVLARLERDGIVRRWK 84 (142)
T ss_dssp HHHHHHHHHHHHCSEEHHHHHHH------TTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHcCCCCHHHHHHH------HCCCHhHHHHHHHHHHHCCCEEeec
Confidence 35555555555556666665442 5678889999999999999999953
No 133
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=21.12 E-value=54 Score=28.17 Aligned_cols=33 Identities=15% Similarity=0.275 Sum_probs=28.2
Q ss_pred ccHHHHHHHhCCCHHHHHHHHHHhhcCCceeeecC
Q 003835 641 LSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKL 675 (792)
Q Consensus 641 lt~~eI~~~T~i~~~eL~r~L~sL~~~k~kiL~k~ 675 (792)
+|..||++.+|++...+.++|..|. ..+++...
T Consensus 34 ~s~~eLa~~lgvs~~tV~~~L~~L~--~~GlV~~~ 66 (110)
T 1q1h_A 34 MTDEEIANQLNIKVNDVRKKLNLLE--EQGFVSYR 66 (110)
T ss_dssp BCHHHHHHTTTSCHHHHHHHHHHHH--HHTSCEEE
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEEE
Confidence 7899999999999999999999998 55555443
No 134
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=21.05 E-value=70 Score=26.34 Aligned_cols=33 Identities=12% Similarity=0.183 Sum_probs=28.3
Q ss_pred ccHHHHHHHhCCCHHHHHHHHHHhhcCCceeeecC
Q 003835 641 LSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKL 675 (792)
Q Consensus 641 lt~~eI~~~T~i~~~eL~r~L~sL~~~k~kiL~k~ 675 (792)
+|++||++.+++++..++|-|..|. +-..|.+.
T Consensus 17 vsv~eLa~~l~VS~~TIRrdL~~Le--~~G~l~R~ 49 (78)
T 1xn7_A 17 MEAAQISQTLNTPQPMINAMLQQLE--SMGKAVRI 49 (78)
T ss_dssp BCHHHHHHHTTCCHHHHHHHHHHHH--HHTSEEEE
T ss_pred CcHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEEe
Confidence 7999999999999999999999998 44455554
No 135
>3on0_A Protein TRAM; DNA binding protein, DNA protein-DNA complex, tetramer, COOP binding, unwinding of DNA, kinking of DNA; 2.87A {Escherichia coli}
Probab=20.96 E-value=1.3e+02 Score=27.00 Aligned_cols=41 Identities=15% Similarity=0.308 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHHHHhhh--ccHH
Q 003835 233 VEHKTVTGLLRMIERERLGEAVDRTLLNHLLKMFTALG--IYSE 274 (792)
Q Consensus 233 l~~~l~~~iL~lI~~eR~g~~id~~llk~~i~ml~~L~--vY~~ 274 (792)
+++++.+.|-++++..|...+ .---+.++..||.+|| ||+-
T Consensus 8 vs~~v~~~I~~iVe~r~qeGA-~dvs~SSv~smLlELGLrVY~~ 50 (127)
T 3on0_A 8 VNNNVYEQITDLVTIRKQEGI-EEASLSNVSSMLLELGLRVYMI 50 (127)
T ss_dssp CCHHHHHHHHHHHHHHHTTTC-TTCCHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHcCc-ccccHHHHHHHHHHHhHHHHHH
Confidence 457778888888998888666 3334678999999998 6653
No 136
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=20.66 E-value=91 Score=27.57 Aligned_cols=48 Identities=13% Similarity=0.095 Sum_probs=35.7
Q ss_pred hhHHHHHhhhcccccChHHHHHHHHHhcCCCCChHHHHHHHHHhhhhcccccCC
Q 003835 729 VDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDK 782 (792)
Q Consensus 729 i~AaIVRIMK~rK~l~h~~Li~ev~~~lrF~~~~~~iKk~IE~LIereYl~Rd~ 782 (792)
.+..|..++.....++-.+|... +..+++.+-+.|..|.+++||+|..
T Consensus 34 ~~~~iL~~l~~~~~~~~~~la~~------l~~s~~tvs~~l~~L~~~glv~r~~ 81 (145)
T 2a61_A 34 AQFDILQKIYFEGPKRPGELSVL------LGVAKSTVTGLVKRLEADGYLTRTP 81 (145)
T ss_dssp HHHHHHHHHHHHCCBCHHHHHHH------HTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHcCCCCHHHHHHH------HCCCchhHHHHHHHHHHCCCeeecC
Confidence 34555555555667777776554 3578889999999999999999953
No 137
>2dt7_A Splicing factor 3A subunit 3; structure genomics, SF3A120, SF3A60, SURP domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.45 E-value=38 Score=24.10 Aligned_cols=16 Identities=31% Similarity=0.571 Sum_probs=12.8
Q ss_pred cccChhHHHHHHHHHH
Q 003835 486 FIQGKDVFEAFYKKDL 501 (792)
Q Consensus 486 ~i~~KD~Fe~~Yk~~L 501 (792)
.|++.|+|..||.+.=
T Consensus 5 ~lsg~~~f~~FY~rlk 20 (38)
T 2dt7_A 5 AISGPNEFAEFYNRLK 20 (38)
T ss_dssp CCCSCCHHHHHHHHHH
T ss_pred HccCCcHHHHHHHHHH
Confidence 4577899999998753
No 138
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=20.29 E-value=1.3e+02 Score=26.59 Aligned_cols=46 Identities=9% Similarity=0.131 Sum_probs=33.0
Q ss_pred HHHHHhhhc-ccccChHHHHHHHHHhcCCCCChHHHHHHHHHhhhhcccccCC
Q 003835 731 AAIVRIMKT-RKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDK 782 (792)
Q Consensus 731 AaIVRIMK~-rK~l~h~~Li~ev~~~lrF~~~~~~iKk~IE~LIereYl~Rd~ 782 (792)
..|...+.. ...++-.+|-.. +..+.+.+-+.|..|.++|||+|.+
T Consensus 38 ~~iL~~l~~~~~~~~~~~la~~------l~i~~~~vs~~l~~Le~~glv~r~~ 84 (147)
T 2hr3_A 38 LVVLGAIDRLGGDVTPSELAAA------ERMRSSNLAALLRELERGGLIVRHA 84 (147)
T ss_dssp HHHHHHHHHTTSCBCHHHHHHH------TTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHcCCCCCHHHHHHH------hCCChhhHHHHHHHHHHCCCEeeCC
Confidence 344444444 556666665443 4678899999999999999999954
No 139
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=20.26 E-value=74 Score=28.50 Aligned_cols=48 Identities=15% Similarity=0.221 Sum_probs=28.0
Q ss_pred hhHHHHHhhhcc--cccChHHHHHHHHHhcCCCCChHHHHHHHHHhhhhcccccCC
Q 003835 729 VDAAIVRIMKTR--KVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDK 782 (792)
Q Consensus 729 i~AaIVRIMK~r--K~l~h~~Li~ev~~~lrF~~~~~~iKk~IE~LIereYl~Rd~ 782 (792)
.+..|...+... ..++-.+|-.. +-.+++.+-+.|..|.++|||+|..
T Consensus 42 ~q~~vL~~l~~~~~~~~t~~eLa~~------l~~~~~~vs~~l~~L~~~Glv~r~~ 91 (148)
T 3jw4_A 42 QQGRMIGYIYENQESGIIQKDLAQF------FGRRGASITSMLQGLEKKGYIERRI 91 (148)
T ss_dssp HHHHHHHHHHHHTTTCCCHHHHHHC------------CHHHHHHHHHHTTSBCCC-
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHH------HCCChhHHHHHHHHHHHCCCEEeeC
Confidence 344455555444 55665554432 4566777889999999999999954
No 140
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=20.23 E-value=1.1e+02 Score=26.28 Aligned_cols=62 Identities=10% Similarity=0.089 Sum_probs=43.1
Q ss_pred HHhhhhhhhhHHHHHhhhcccccChHHHHHHHHHhcCCCCChHHHHHHHHHhhhhcccccCCCCCCcee
Q 003835 721 VFQDRQYQVDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQIYN 789 (792)
Q Consensus 721 v~~dR~~~i~AaIVRIMK~rK~l~h~~Li~ev~~~lrF~~~~~~iKk~IE~LIereYl~Rd~~d~~~Y~ 789 (792)
+..--...+...|++.+.. ..++-.+|... +..+++.+-+.+..|.+.|+|++..+.+..|-
T Consensus 18 ~~~al~~~~r~~IL~~L~~-~~~s~~eLa~~------lgis~stvs~~L~~L~~~GlV~~~~~gr~~~y 79 (108)
T 2kko_A 18 VGKALANGRRLQILDLLAQ-GERAVEAIATA------TGMNLTTASANLQALKSGGLVEARREGTRQYY 79 (108)
T ss_dssp HHHHHTTSTTHHHHHHHTT-CCEEHHHHHHH------HTCCHHHHHHHHHHHHHHTSEEEEEETTEEEE
T ss_pred HHHHhCCHHHHHHHHHHHc-CCcCHHHHHHH------HCcCHHHHHHHHHHHHHCCCeEEEEeCCEEEE
Confidence 3333344555677777764 66777775554 35788899999999999999998765554443
No 141
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=20.23 E-value=60 Score=32.46 Aligned_cols=44 Identities=18% Similarity=0.350 Sum_probs=35.5
Q ss_pred ccHHHHHHHhCCCHHHHHHHHHHhhcCCceeeecCCCCCCCCCCCeEEEccC
Q 003835 641 LSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLPKGRDVEDDDSFVFNEG 692 (792)
Q Consensus 641 lt~~eI~~~T~i~~~eL~r~L~sL~~~k~kiL~k~p~~~~i~~~d~f~~N~~ 692 (792)
+|+.||++.+|++...+.|.|.+|. +..++.+.+. +..|.+...
T Consensus 22 ~s~~ela~~~gl~~stv~r~l~~L~--~~G~v~~~~~------~~~Y~lg~~ 65 (241)
T 2xrn_A 22 LSLAAIAQLVGLPRSTVQRIINALE--EEFLVEALGP------AGGFRLGPA 65 (241)
T ss_dssp EEHHHHHHHTTSCHHHHHHHHHHHH--TTTSEEECGG------GCEEEECSH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEEeCC------CCeEEECHH
Confidence 7899999999999999999999999 7777877542 245666544
No 142
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=20.18 E-value=7.6e+02 Score=25.80 Aligned_cols=174 Identities=11% Similarity=0.114 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHHHH-hccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHhhccc-cchHHHH
Q 003835 304 YLKHVEIRLHEEHER-CLLYLDVSTRKPLIATAERQLLERHISAILDKGFTMLMDGHRTEDLQRMYSLFSRV-NALESLR 381 (792)
Q Consensus 304 YL~~ve~~l~eE~~R-~~~yL~~sT~~~L~~~l~~~LI~~~~~~ll~~g~~~ll~~~~~~~L~~ly~L~~~~-~~l~~l~ 381 (792)
-..+..+.+++|.-+ +..|.+...-. +.+.+.+|-.=++.+|..--...=..++.+.|..|-.+..+. +.+.+..
T Consensus 37 ~~vr~lR~vKkeiLkLiet~i~~~~d~---~~v~~~~ippLl~~VL~DY~~~vp~aRepeVL~l~~tii~kl~~~i~~~v 113 (321)
T 1w9c_A 37 PLIRSMRTVKRETLKLISGWVSRSNDP---QMVAENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEI 113 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCSCH---HHHHHHTHHHHHHHHHHHHHTSCGGGCCTHHHHHHHHHHHHHGGGGGGGH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCH---HHHHHHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHHhhhhH
Confidence 345555777777754 45566543221 223344444444445532222223456778888888887776 3333222
Q ss_pred HHHHHHHHHhhcccccCchhhHHHHHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHHHHHhcCCCCchhHHHHHHHHHH
Q 003835 382 QALAMYIRRTGHGIVMDEEKDKDMVSSLLEFKASLDTIWEQSFSKNEAFCNTIKDAFEYLINLRQNRPAELIAKFLDEKL 461 (792)
Q Consensus 382 ~~~~~yI~~~G~~iv~~~~~~~~~V~~Ll~l~~~~~~ii~~~F~~~~~f~~~l~~af~~~iN~~~~~~~e~Laky~D~~L 461 (792)
..+-+.|-..-.+++.+ +-.+|=+.=++++.-+..+...|| ..+++ -+++..-.++|.++
T Consensus 114 p~Il~~VFe~TL~MI~~--df~eyPehR~~Ff~LL~ai~~~cF--------------~al~~----lp~~~fklvidsii 173 (321)
T 1w9c_A 114 PQIFDAVFECTLNMINK--DFEEYPEHRTNFFLLLQAVNSHCF--------------PAFLA----IPPTQFKLVLDSII 173 (321)
T ss_dssp HHHHHHHHHHHHHHHSS--TTTCSHHHHHHHHHHHHHHHHHCT--------------THHHH----SCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhc--ccccChHHHHHHHHHHHHHHHHhH--------------HHHHc----CCHHHHHHHHHHHH
Confidence 22223332222222221 011233333445555566666665 33444 36678888999877
Q ss_pred hcCCCCCCHHHHHhhhhchheeeeccc-ChhHHHHHHHHHH
Q 003835 462 RAGNKGTSEEELEGTLDKVLVLFRFIQ-GKDVFEAFYKKDL 501 (792)
Q Consensus 462 r~~~k~~~~~e~e~~ld~i~~lF~~i~-~KD~Fe~~Yk~~L 501 (792)
- |.|...-+--|.-|+-+..++.-+. +.+.-..||+.+.
T Consensus 174 W-a~kH~~r~V~e~gL~il~~ll~n~~~~~~~~~~Fy~~fy 213 (321)
T 1w9c_A 174 W-AFKHTMRNVADTGLQILFTLLQNVAQEEAAAQSFYQTYF 213 (321)
T ss_dssp H-HTTCSSHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred H-HcCCCCchHHHHHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 5 5555443333444555555555554 3567778887776
No 143
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=20.17 E-value=1.2e+02 Score=27.10 Aligned_cols=47 Identities=13% Similarity=0.265 Sum_probs=32.8
Q ss_pred hHHHHHhhhcccccChHHHHHHHHHhcCCCCChHHHHHHHHHhhhhcccccCC
Q 003835 730 DAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDK 782 (792)
Q Consensus 730 ~AaIVRIMK~rK~l~h~~Li~ev~~~lrF~~~~~~iKk~IE~LIereYl~Rd~ 782 (792)
+..|..++.....++-.+|-.. +..+.+.+-+.|..|.+++||+|.+
T Consensus 39 ~~~iL~~l~~~~~~t~~ela~~------l~~s~~tvs~~l~~Le~~glv~r~~ 85 (155)
T 1s3j_A 39 QLFVLASLKKHGSLKVSEIAER------MEVKPSAVTLMADRLEQKNLIARTH 85 (155)
T ss_dssp HHHHHHHHHHHSEEEHHHHHHH------HTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHcCCCCHHHHHHH------HCCCHHHHHHHHHHHHHCCCEeecC
Confidence 4445555555555555554443 3568889999999999999999853
Done!