Query 003835
Match_columns 792
No_of_seqs 218 out of 809
Neff 7.2
Searched_HMMs 13730
Date Mon Mar 25 05:40:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003835.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/003835hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2hyec2 a.118.17.1 (C:55-401) 100.0 1.8E-65 1.3E-69 562.0 36.7 346 100-445 1-347 (347)
2 d1ldja2 a.118.17.1 (A:17-410) 100.0 1E-59 7.3E-64 524.9 32.0 337 105-446 2-391 (394)
3 d2hyec3 e.40.1.1 (C:403-675) C 100.0 5.3E-58 3.9E-62 486.0 25.7 261 447-708 1-273 (273)
4 d1ldja3 e.40.1.1 (A:411-686) C 100.0 6.6E-56 4.8E-60 470.4 26.9 259 443-703 2-275 (276)
5 d2hyec1 a.4.5.34 (C:676-759) C 100.0 8.7E-30 6.4E-34 217.3 7.9 84 709-792 1-84 (84)
6 d1ldja1 a.4.5.34 (A:687-776) A 99.9 3.8E-28 2.8E-32 210.0 7.6 85 708-792 4-90 (90)
7 d1iuya_ a.4.5.34 (A:) Cullin-3 99.9 8.8E-28 6.4E-32 209.1 4.7 87 706-792 4-92 (92)
8 d1jhfa1 a.4.5.2 (A:2-72) LexA 79.8 1.6 0.00012 33.7 6.0 61 724-788 5-65 (71)
9 d1wi9a_ a.4.5.47 (A:) Hypothet 79.1 1.1 8.1E-05 34.5 4.5 56 731-792 10-65 (72)
10 d1mkma1 a.4.5.33 (A:1-75) Tran 74.3 1.3 9.5E-05 34.6 3.9 35 641-677 21-55 (75)
11 d1p6ra_ a.4.5.39 (A:) Penicill 70.1 2.1 0.00016 34.0 4.4 61 728-791 9-69 (82)
12 d1i1ga1 a.4.5.32 (A:2-61) LprA 65.9 4.5 0.00033 29.9 5.2 48 728-781 3-50 (60)
13 d2cg4a1 a.4.5.32 (A:4-66) Regu 63.2 5.1 0.00037 29.8 5.1 47 728-780 5-51 (63)
14 d2g9wa1 a.4.5.39 (A:3-124) Hyp 62.0 2.6 0.00019 35.9 3.6 61 728-791 7-68 (122)
15 d1okra_ a.4.5.39 (A:) Methicil 61.6 3.1 0.00022 35.2 4.0 60 730-792 9-68 (120)
16 d2cfxa1 a.4.5.32 (A:1-63) Tran 60.0 6.6 0.00048 29.2 5.2 47 728-780 5-51 (63)
17 d2cyya1 a.4.5.32 (A:5-64) Puta 56.4 8.6 0.00062 28.1 5.3 48 728-781 3-50 (60)
18 d1tw3a1 a.4.5.29 (A:14-98) Car 49.4 6.8 0.00049 31.0 3.9 42 641-691 35-76 (85)
19 d1ub9a_ a.4.5.28 (A:) Hypothet 49.1 9.5 0.00069 30.6 4.9 57 728-790 16-74 (100)
20 d1u2wa1 a.4.5.5 (A:12-119) Cad 46.6 9.2 0.00067 31.6 4.5 45 641-691 46-90 (108)
21 d1sd4a_ a.4.5.39 (A:) Penicill 46.0 7.6 0.00055 32.8 3.9 60 730-792 8-67 (122)
22 d1r1ua_ a.4.5.5 (A:) Metal-sen 45.4 6.4 0.00046 31.8 3.1 45 641-691 32-76 (94)
23 d1r1ta_ a.4.5.5 (A:) SmtB repr 44.3 6.7 0.00049 31.9 3.1 45 641-691 37-81 (98)
24 d1lvaa3 a.4.5.35 (A:511-574) C 43.5 12 0.00085 27.9 4.2 32 641-674 24-55 (64)
25 d1l0oc_ a.4.13.2 (C:) SigmaF { 40.9 10 0.00074 27.5 3.3 23 641-663 32-54 (57)
26 d1lnwa_ a.4.5.28 (A:) MexR rep 40.4 22 0.0016 30.1 6.3 52 729-786 37-90 (141)
27 d1i1ga1 a.4.5.32 (A:2-61) LprA 38.3 8.9 0.00065 28.1 2.7 31 641-673 18-48 (60)
28 d2cfxa1 a.4.5.32 (A:1-63) Tran 37.2 12 0.00086 27.7 3.3 31 641-673 20-50 (63)
29 d1sfxa_ a.4.5.50 (A:) Hypothet 35.7 13 0.00092 30.5 3.6 59 728-792 20-80 (109)
30 d1z05a1 a.4.5.63 (A:10-80) Tra 33.9 19 0.0014 27.0 4.1 45 731-781 9-53 (71)
31 d2d1ha1 a.4.5.50 (A:1-109) Hyp 33.6 15 0.0011 29.8 3.8 49 729-783 22-71 (109)
32 d2cyya1 a.4.5.32 (A:5-64) Puta 33.6 12 0.00086 27.3 2.7 31 641-673 18-48 (60)
33 d2cg4a1 a.4.5.32 (A:4-66) Regu 33.2 13 0.00098 27.3 3.0 31 641-673 20-50 (63)
34 d1ylfa1 a.4.5.55 (A:5-142) Hyp 32.2 14 0.00099 31.7 3.3 33 641-675 24-56 (138)
35 d1jgsa_ a.4.5.28 (A:) Multiple 31.9 27 0.002 29.4 5.4 52 729-786 35-88 (138)
36 d1qzza1 a.4.5.29 (A:10-101) Ac 30.4 20 0.0015 28.5 3.9 34 641-676 41-74 (92)
37 d1fy7a_ d.108.1.1 (A:) Histone 30.1 13 0.00097 35.8 3.1 25 641-665 207-231 (273)
38 d1jhfa1 a.4.5.2 (A:2-72) LexA 27.3 23 0.0017 26.7 3.5 34 641-676 25-59 (71)
39 d1nkta2 a.172.1.1 (A:616-835) 25.5 2.2E+02 0.016 25.3 14.3 63 174-242 154-216 (220)
40 d2etha1 a.4.5.28 (A:1-140) Put 25.3 49 0.0036 27.6 5.9 50 730-785 34-85 (140)
41 d1fp2a1 a.4.5.29 (A:8-108) Iso 23.9 15 0.0011 29.9 1.9 44 641-691 45-91 (101)
42 d1xd7a_ a.4.5.55 (A:) Hypothet 23.7 26 0.0019 29.2 3.6 32 641-674 19-50 (127)
43 d1dpua_ a.4.5.16 (A:) C-termin 23.5 33 0.0024 25.8 3.7 26 641-666 24-50 (69)
44 d1tf5a2 a.172.1.1 (A:571-780) 23.3 2.4E+02 0.017 24.9 11.2 131 103-242 53-206 (210)
45 d1dpua_ a.4.5.16 (A:) C-termin 22.8 35 0.0025 25.7 3.7 32 749-781 26-57 (69)
46 d1wxva1 d.15.1.1 (A:7-87) Bag- 22.8 49 0.0036 25.3 4.8 34 621-654 2-43 (81)
47 d1rp3a2 a.4.13.2 (A:164-234) S 22.8 28 0.0021 25.5 3.2 22 641-662 38-59 (71)
48 d1z6ra1 a.4.5.63 (A:12-81) Mlc 22.8 59 0.0043 24.0 5.1 45 731-781 8-52 (70)
49 d2ozua1 d.108.1.1 (A:507-776) 21.5 25 0.0018 33.7 3.2 25 641-665 205-229 (270)
50 d2bv6a1 a.4.5.28 (A:5-140) Tra 21.4 44 0.0032 27.8 4.7 56 729-790 35-93 (136)
51 d2giva1 d.108.1.1 (A:4-274) Pr 21.2 25 0.0018 33.6 3.2 25 641-665 204-228 (271)
52 d1s3ja_ a.4.5.28 (A:) Putative 21.0 42 0.0031 28.1 4.5 30 758-787 59-90 (143)
53 d2bbya_ a.4.5.15 (A:) DNA-bind 20.4 60 0.0044 24.3 4.6 31 641-676 23-53 (69)
No 1
>d2hyec2 a.118.17.1 (C:55-401) Cullin-4A {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00 E-value=1.8e-65 Score=561.98 Aligned_cols=346 Identities=50% Similarity=0.836 Sum_probs=335.6
Q ss_pred CCchHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHhhhcCCCcHHHHHHH
Q 003835 100 PTNFEEDTWAKLKLAIKAIFLKQPTSCDLEKLYQAVNDLCLHKMGGNLYQRIEKECEEHISAAIRSLVGQSPDLVVFLSL 179 (792)
Q Consensus 100 ~~~~~e~~W~~L~~AI~~I~~~~~~~~s~e~LY~~Vy~lC~~k~~e~LY~~l~~~~~~~l~~~~~~l~~~~~d~~~~L~~ 179 (792)
|++|+|++|..|++||+.|+.++++++|||+||++||++|++++|++||+++++.|++|+...+.++.....++..||..
T Consensus 1 p~~~~e~~W~~L~~ai~~I~~~~~~~~s~e~lY~~vy~lc~~~~~~~LY~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~ 80 (347)
T d2hyec2 1 PDNYTQDTWRKLHEAVRAVQSSTSIRYNLEELYQAVENLCSHKVSPMLYKQLRQACEDHVQAQILPFREDSLDSVLFLKK 80 (347)
T ss_dssp SCCTTTTHHHHHHHHHHTTSTTCCCSSCHHHHHHHHHHHCCTTTHHHHHHHHHHHHHHHHHHHHHHHTSCCCCTTHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHH
Confidence 67999999999999999999999999999999999999999999999999999999999999998887765555689999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCcccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHhcCCcCChHHH
Q 003835 180 VERCWQDLCDQMLMIRGIALYLDRTYVKQTPNVRSLWDMGLQLFRKYLSSYSEVEHKTVTGLLRMIERERLGEAVDRTLL 259 (792)
Q Consensus 180 ~~~~W~~~~~~l~~i~~iF~YLDR~Yv~~~~~~~sI~dlgL~lFr~~v~~~~~l~~~l~~~iL~lI~~eR~g~~id~~ll 259 (792)
+.+.|++|+.++.+|++||+||||+|+.++++.++|+++|+.+|+++|+.++.+.++++++++++|+++|.|+.+|+.++
T Consensus 81 ~~~~W~~~~~~~~~l~~if~YLdr~yv~~~~~~~~i~~~~l~lf~~~v~~~~~~~~~l~~~ll~~I~~~R~g~~i~~~ll 160 (347)
T d2hyec2 81 INTCWQDHCRQMIMIRSIFLFLDRTYVLQNSTLPSIWDMGLELFRTHIISDKMVQSKTIDGILLLIERERSGEAVDRSLL 160 (347)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHTTTTTSCSSSCCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHTTTTTCCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcchhhhhcCCCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHcCCCCcHHHH
Confidence 99999999999999999999999999998876789999999999999998778999999999999999999999999999
Q ss_pred HHHHHHHHhhhccHHhhHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHHHHhccccCcCcHHHHHHHHHHHH
Q 003835 260 NHLLKMFTALGIYSESFEKPFLECTSEFYAAEGMKYMQQSDVPDYLKHVEIRLHEEHERCLLYLDVSTRKPLIATAERQL 339 (792)
Q Consensus 260 k~~i~ml~~L~vY~~~FE~~fL~~T~~yY~~es~~~l~~~s~~eYL~~ve~~l~eE~~R~~~yL~~sT~~~L~~~l~~~L 339 (792)
++++.|+..|++|.+.||++||++|.+||+.++.+|+++.++++|+.+|+.++++|.+||..||+++|.++|+++|+++|
T Consensus 161 ~~~~~~~~~l~~Y~~~fE~~~l~~t~~yY~~~~~~~l~~~~~~~Yl~~v~~~l~eE~~r~~~~l~~~t~~~l~~~l~~~L 240 (347)
T d2hyec2 161 RSLLGMLSDLQVYKDSFELKFLEETNCLYAAEGQRLMQEREVPEYLNHVSKRLEEEGDRVITYLDHSTQKPLIACVEKQL 240 (347)
T ss_dssp HHHHHHHHHTTCHHHHTHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTHHHHTTTSCTTTHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhccHhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccCCHHHHHHHHHhhccc-cchHHHHHHHHHHHHHhhcccccCchhhHHHHHHHHHHHHHHHH
Q 003835 340 LERHISAILDKGFTMLMDGHRTEDLQRMYSLFSRV-NALESLRQALAMYIRRTGHGIVMDEEKDKDMVSSLLEFKASLDT 418 (792)
Q Consensus 340 I~~~~~~ll~~g~~~ll~~~~~~~L~~ly~L~~~~-~~l~~l~~~~~~yI~~~G~~iv~~~~~~~~~V~~Ll~l~~~~~~ 418 (792)
|.+|.+.|+++||..||++++.++|++||+||+++ ++++.|+..|++||.+.|.+++.+.++++.||+.||++|++++.
T Consensus 241 i~~~~~~il~~~~~~ll~~~~~~~L~~ly~L~~r~~~~~~~l~~~f~~~i~~~G~~~v~~~~~~~~~V~~ll~l~~k~~~ 320 (347)
T d2hyec2 241 LGEHLTAILQKGLDHLLDENRVPDLAQMYQLFSRVRGGQQALLQHWSEYIKTFGTAIVINPEKDKDMVQDLLDFKDKVDH 320 (347)
T ss_dssp TTTCSHHHHHTTHHHHHTTTCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHSCGGGTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999 88999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCChhhhHHHHHHHHHHHhcC
Q 003835 419 IWEQSFSKNEAFCNTIKDAFEYLINLR 445 (792)
Q Consensus 419 ii~~~F~~~~~f~~~l~~af~~~iN~~ 445 (792)
++..||++|+.|.+++++||+.|||.+
T Consensus 321 li~~~F~~d~~f~~~l~~af~~~iNkr 347 (347)
T d2hyec2 321 VIEVCFQKNERFVNLMKESFETFINKR 347 (347)
T ss_dssp HHHTTTTTCHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHccCC
Confidence 999999999999999999999999974
No 2
>d1ldja2 a.118.17.1 (A:17-410) Cullin homolog 1, Cul-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00 E-value=1e-59 Score=524.87 Aligned_cols=337 Identities=27% Similarity=0.515 Sum_probs=314.1
Q ss_pred HHHHHHHHHHHHHHHhcCCCCc-cHHHHHHHHHhhhccCc---------------------------hhHHHHHHHHHHH
Q 003835 105 EDTWAKLKLAIKAIFLKQPTSC-DLEKLYQAVNDLCLHKM---------------------------GGNLYQRIEKECE 156 (792)
Q Consensus 105 e~~W~~L~~AI~~I~~~~~~~~-s~e~LY~~Vy~lC~~k~---------------------------~e~LY~~l~~~~~ 156 (792)
|++|..|++||++|+.+++... +||+||++||++|++++ |++||+++++.++
T Consensus 2 d~~W~~L~~ai~~I~~~~~~~~~~~~~lY~~vy~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~LY~~l~~~l~ 81 (394)
T d1ldja2 2 DQIWDDLRAGIQQVYTRQSMAKSRYMELYTHVYNYCTSVHQSNQARGAGVPPSKSKKGQTPGGAQFVGLELYKRLKEFLK 81 (394)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHTCCC----------------------------TTHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCccccccccccchhhhhhccccchhhhHHHHHHHHHHHHHH
Confidence 7899999999999999887665 59999999999998874 6799999999999
Q ss_pred HHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCC-----CcccHHHHHHHHHHHHhcccc
Q 003835 157 EHISAAIRSLVGQSPDLVVFLSLVERCWQDLCDQMLMIRGIALYLDRTYVKQTP-----NVRSLWDMGLQLFRKYLSSYS 231 (792)
Q Consensus 157 ~~l~~~~~~l~~~~~d~~~~L~~~~~~W~~~~~~l~~i~~iF~YLDR~Yv~~~~-----~~~sI~dlgL~lFr~~v~~~~ 231 (792)
.|+..++..+....+ +++|..+.+.|++|+.++.+|++||+||||+|+.+++ +.++|+++|+.+||++|+.
T Consensus 82 ~~l~~i~~~~~~~~~--~~~L~~~~~~W~~~~~~~~~l~~if~YLdr~yv~~~~~~~~~~~~~I~~~~l~~fr~~v~~-- 157 (394)
T d1ldja2 82 NYLTNLLKDGEDLMD--ESVLKFYTQQWEDYRFSSKVLNGICAYLNRHWVRRECDEGRKGIYEIYSLALVTWRDCLFR-- 157 (394)
T ss_dssp HHHHHHHHTTCSCTT--TTHHHHHHHHHHHHHHHHHHHHHHTHHHHHHSSSCCC-------CCHHHHHHHTTHHHHTT--
T ss_pred HHHHHHHHHHhcCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcccccccccchHHHHHHHHHHHHHHH--
Confidence 999998877665443 4799999999999999999999999999999999864 3579999999999999986
Q ss_pred chHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHHHHhhh--------------ccHHhhHHHHHHHHHHHHHHHHHHHhh
Q 003835 232 EVEHKTVTGLLRMIERERLGEAVDRTLLNHLLKMFTALG--------------IYSESFEKPFLECTSEFYAAEGMKYMQ 297 (792)
Q Consensus 232 ~l~~~l~~~iL~lI~~eR~g~~id~~llk~~i~ml~~L~--------------vY~~~FE~~fL~~T~~yY~~es~~~l~ 297 (792)
+++++++++++++|+++|+|+.+|+.+|++++.||..|| +|.+.||++||++|.+||+.++.+|++
T Consensus 158 ~~~~~l~~~il~~I~~~R~g~~i~~~li~~~i~~l~~l~~~~~~~~~~~~~~~~Y~~~FE~~~L~~t~~~Y~~~~~~~l~ 237 (394)
T d1ldja2 158 PLNKQVTNAVLKLIEKERNGETINTRLISGVVQSYVELGLNEDDAFAKGPTLTVYKESFESQFLADTERFYTRESTEFLQ 237 (394)
T ss_dssp TTTTHHHHHHHHHHTTTSCCTTCCTHHHHHHHHHHHHTSCCSSSSSCSSCCCHHHHHHTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHhCcchhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 799999999999999999999999999999999999995 799999999999999999999999999
Q ss_pred cCChhhHHHHHHHHHHHHHHHhccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHhhccc-cc
Q 003835 298 QSDVPDYLKHVEIRLHEEHERCLLYLDVSTRKPLIATAERQLLERHISAILDKGFTMLMDGHRTEDLQRMYSLFSRV-NA 376 (792)
Q Consensus 298 ~~s~~eYL~~ve~~l~eE~~R~~~yL~~sT~~~L~~~l~~~LI~~~~~~ll~~g~~~ll~~~~~~~L~~ly~L~~~~-~~ 376 (792)
+.++++||++|+.++++|.+||..||+++|.++|+++|+++||.+|++.| .+||..||++++.++|++||+||+++ ++
T Consensus 238 ~~~~~eYl~~v~~~l~eE~~r~~~yl~~~t~~~l~~~l~~~LI~~~~~~l-~~~~~~ll~~~~~~~L~~lY~L~~rv~~~ 316 (394)
T d1ldja2 238 QNPVTEYMKKAEARLLEEQRRVQVYLHESTQDELARKCEQVLIEKHLEIF-HTEFQNLLDADKNEDLGRMYNLVSRIQDG 316 (394)
T ss_dssp HSCTTSSHHHHHHHHHHHHHTTTTTTCSSSSHHHHHHHHHHHSSSSSHHH-HHHHHHHHHSCCTTHHHHHHHHHHHSTTC
T ss_pred hCChhHHHHHHHHHHHHHHHHHHHccChhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcccHHHHHHHHHHHhhccch
Confidence 99999999999999999999999999999999999999999999999876 57999999999999999999999999 99
Q ss_pred hHHHHHHHHHHHHHhhcccccCch-----hhHHHHHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHHHHHhcCC
Q 003835 377 LESLRQALAMYIRRTGHGIVMDEE-----KDKDMVSSLLEFKASLDTIWEQSFSKNEAFCNTIKDAFEYLINLRQ 446 (792)
Q Consensus 377 l~~l~~~~~~yI~~~G~~iv~~~~-----~~~~~V~~Ll~l~~~~~~ii~~~F~~~~~f~~~l~~af~~~iN~~~ 446 (792)
++.|+..|++||++.|.+++.+.. +++.||+.||++|++++.++.+||++|+.|..++++||+.|||.+.
T Consensus 317 ~~~l~~~~~~~I~~~G~~~i~~~~~~~~~~~~~~V~~ll~l~~~~~~ii~~~F~~d~~f~~~l~~af~~fiN~n~ 391 (394)
T d1ldja2 317 LGELKKLLETHIHNQGLAAIEKCGEAALNDPKMYVQTVLDVHKKYNALVMSAFNNDAGFVAALDKACGRFINNNA 391 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSGGGCHHHHHHHHHHHHHHHHHHHHTTTTTCHHHHHHHHHHHHHHHHSSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCccc
Confidence 999999999999999999986532 3568999999999999999999999999999999999999999774
No 3
>d2hyec3 e.40.1.1 (C:403-675) Cullin-4A {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00 E-value=5.3e-58 Score=486.02 Aligned_cols=261 Identities=68% Similarity=1.069 Sum_probs=251.6
Q ss_pred CCchhHHHHHHHHHHhcCCCCCCHHHHHhhhhchheeeecccChhHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHh
Q 003835 447 NRPAELIAKFLDEKLRAGNKGTSEEELEGTLDKVLVLFRFIQGKDVFEAFYKKDLAKRLLLGKSASIDAEKSMISKLKTE 526 (792)
Q Consensus 447 ~~~~e~Laky~D~~Lr~~~k~~~~~e~e~~ld~i~~lF~~i~~KD~Fe~~Yk~~LakRLL~~~s~s~d~E~~mi~kLk~e 526 (792)
|++||+||+|||.+||+|.+..++++++..+++++.||+||++||+|+.+|+++||+|||.+++.+.|.|+.||.+|+.+
T Consensus 1 ~~~~e~la~y~D~~lr~~~k~~~~~~~~~~l~~i~~lf~~l~~Kd~F~~~Y~~~La~RLL~~~~~~~~~E~~~i~~L~~~ 80 (273)
T d2hyec3 1 NKPAELIAKHVDSKLRAGNKEATDEELERTLDKIMILFRFIHGKDVFEAFYKKDLAKRLLVGKSASVDAEKSMLSKLKHE 80 (273)
T ss_dssp SHHHHHHHHHHHHHHSSCGGGCCSTTHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHTT
T ss_pred CCcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 46899999999999999988889999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHhHHhhHHHHHHHHHHhhhccCCCCCcceEEEEeecCCCCCCCCCCccCChHHHHHHHHHHHHHHhc
Q 003835 527 CGSQFTNKLEGMFKDIELSKEINESFKQSSQARTKLPSGIEMSVHVLTTGYWPTYPPMDVRLPHELNVYQDIFKEFYLSK 606 (792)
Q Consensus 527 cG~~fT~kLe~MfkDi~~S~~l~~~f~~~~~~~~~~~~~~~f~v~VLt~~~WP~~~~~~~~LP~~l~~~~~~F~~fY~~k 606 (792)
||.+||++|++|++|++.|++++.+|++.... .....+++|+|.|||+|+||.++..++.||++|+.+++.|++||..+
T Consensus 81 ~g~~~~~kl~~Ml~D~~~S~~l~~~f~~~~~~-~~~~~~~~~~v~vLs~~~WP~~~~~~~~lP~~l~~~~~~F~~~Y~~~ 159 (273)
T d2hyec3 81 CGAAFTSKLEGMFKDMELSKDIMVHFKQHMQN-QSDSGPIDLTVNILTMGYWPTYTPMEVHLTPEMIKLQEVFKAFYLGK 159 (273)
T ss_dssp TCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCCCCCEEEEEEEETTTSCCCCCCCCCCCHHHHHHHHHHHHHHHTT
T ss_pred hChHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cccCCCCceEEEEeeCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999998766 34446799999999999999999999999999999999999999999
Q ss_pred CCceeEEeecCcceEEEEEEecCCeeEEEEeecc------------ccHHHHHHHhCCCHHHHHHHHHHhhcCCceeeec
Q 003835 607 YSGRRLMWQNSLGHCVLKAEFPKGKKELAVSLFQ------------LSFQDIKDATGIEDKELRRTLQSLACGKVRVLQK 674 (792)
Q Consensus 607 ~~gRkL~W~~~Lg~~~i~~~f~~~~~el~vs~~Q------------lt~~eI~~~T~i~~~eL~r~L~sL~~~k~kiL~k 674 (792)
|+||+|.|.|+||+|+|+++|++|+|+|.||++| +|+++|++.|||++++|+++|.+|+++|.+||.+
T Consensus 160 ~~~RkL~w~~~ls~~~l~~~~~~~~~~l~~s~~Qa~ILl~fn~~~~~t~~~i~~~~~i~~~~l~~~L~~L~~~k~~iL~~ 239 (273)
T d2hyec3 160 HSGRKLQWQTTLGHAVLKAEFKEGKKEFQVSLFQTLVLLMFNEGDGFSFEEIKMATGIEDSELRRTLQSLACGKARVLIK 239 (273)
T ss_dssp SCSEECCBCGGGCEEEEECCCSSCCCEEEEEHHHHHHHHHTTSCCCEEHHHHHHHTCCCHHHHHHHHHTTTTTTTCSEEE
T ss_pred CCCCEEEEecCCccEEEEEEECCCcEEEEEcHHHHHHHHHhcCCCCCcHHHHHHHHCcCHHHHHHHHHHHHhcccceeee
Confidence 9999999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCeEEEccCCCCCceeEEecccccc
Q 003835 675 LPKGRDVEDDDSFVFNEGFTAPLYRIKVNAIQMK 708 (792)
Q Consensus 675 ~p~~~~i~~~d~f~~N~~Ft~~~~riki~~i~~k 708 (792)
.|.++++.++|.|.||.+|+++++|||||+|++|
T Consensus 240 ~~~~~~~~~~~~~~~N~~F~~k~~kiki~~~~~~ 273 (273)
T d2hyec3 240 SPKGKEVEDGDKFIFNGEFKHKLFRIKINQIQMK 273 (273)
T ss_dssp TTCSSSCCSSCEEEECCCCCCSCSSEECGGGGGC
T ss_pred cCCCCcCCCCCEEEEeccCCCCCeEEeecccccC
Confidence 9999999999999999999999999999998764
No 4
>d1ldja3 e.40.1.1 (A:411-686) Cullin homolog 1, cul-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00 E-value=6.6e-56 Score=470.43 Aligned_cols=259 Identities=38% Similarity=0.595 Sum_probs=243.0
Q ss_pred hcCCCCchhHHHHHHHHHHhcCCCCCCHHHHHhhhhchheeeecccChhHHHHHHHHHHHHHhcCCCCCChHHHHHHHHH
Q 003835 443 NLRQNRPAELIAKFLDEKLRAGNKGTSEEELEGTLDKVLVLFRFIQGKDVFEAFYKKDLAKRLLLGKSASIDAEKSMISK 522 (792)
Q Consensus 443 N~~~~~~~e~Laky~D~~Lr~~~k~~~~~e~e~~ld~i~~lF~~i~~KD~Fe~~Yk~~LakRLL~~~s~s~d~E~~mi~k 522 (792)
+....++||+||+|||.+||++.++.++++++..+++|+.||+||++||+|+.+|+++||+|||.+++.+.|.|+.||++
T Consensus 2 ~~~~~~~~e~La~y~D~~lk~~~k~~~~~~~~~~l~~i~~if~~l~~KD~F~~~Y~~~La~RLL~~~~~~~~~E~~~i~~ 81 (276)
T d1ldja3 2 AQSSSKSPELLARYCDSLLKKSSKNPEEAELEDTLNQVMVVFKYIEDKDVFQKFYAKMLAKRLVHQNSASDDAEASMISK 81 (276)
T ss_dssp HTSTTHHHHHHHHHHHHHHBCCSSCCCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHTTCBSCHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHhCcCCCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHH
Confidence 34456899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhHHHHHHHHHHhHHhhHHHHHHHHHHhhhccCCCCCcceEEEEeecCCCCCCCCCCccCChHHHHHHHHHHHH
Q 003835 523 LKTECGSQFTNKLEGMFKDIELSKEINESFKQSSQARTKLPSGIEMSVHVLTTGYWPTYPPMDVRLPHELNVYQDIFKEF 602 (792)
Q Consensus 523 Lk~ecG~~fT~kLe~MfkDi~~S~~l~~~f~~~~~~~~~~~~~~~f~v~VLt~~~WP~~~~~~~~LP~~l~~~~~~F~~f 602 (792)
||.+||.+||++|++|++|++.|++++++|+++..+ . ...+++|+|.|||.|+||.++..++.||++|+.+++.|++|
T Consensus 82 Lk~~~g~~~~~kl~~Ml~D~~~S~~~~~~f~~~~~~-~-~~~~~~~~v~Vlt~~~WP~~~~~~~~lP~~l~~~~~~f~~~ 159 (276)
T d1ldja3 82 LKQACGFEYTSKLQRMFQDIGVSKDLNEQFKKHLTN-S-EPLDLDFSIQVLSSGSWPFQQSCTFALPSELERSYQRFTAF 159 (276)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-T-CCCSSEEEEEEEETTTSCCCCCSCCCCCGGGHHHHHHHHHH
T ss_pred HHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-c-CCcCceEEEEEeeCCccCcCCCCCccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998765 2 23468999999999999999988999999999999999999
Q ss_pred HHhcCCceeEEeecCcceEEEEEEecCCeeEEEEeecc------------ccHHHHHHHhCCCHHHHHHHHHHhhcCCce
Q 003835 603 YLSKYSGRRLMWQNSLGHCVLKAEFPKGKKELAVSLFQ------------LSFQDIKDATGIEDKELRRTLQSLACGKVR 670 (792)
Q Consensus 603 Y~~k~~gRkL~W~~~Lg~~~i~~~f~~~~~el~vs~~Q------------lt~~eI~~~T~i~~~eL~r~L~sL~~~k~k 670 (792)
|..+|+||+|.|.|+||+|+|+++|++|+|+|.||++| +|++||++.||+++++|+++|.+|++.|..
T Consensus 160 Y~~~~~~RkL~w~~~lg~~~l~~~~~~~~~~l~vs~~Qa~ILllFN~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~kll 239 (276)
T d1ldja3 160 YASRHSGRKLTWLYQLSKGELVTNCFKNRYTLQASTFQMAILLQYNTEDAYTVQQLTDSTQIKMDILAQVLQILLKSKLL 239 (276)
T ss_dssp TTTTCTTCCEEECGGGCCCEEEESSSSSCCEEECCHHHHHHHHGGGSSSEEEHHHHHHHTCCCHHHHHHHHHHHHHTTTE
T ss_pred HHHhCCCCeEEEecCCCcEEEEEEECCCcEEEEECHHHHHHHHhhcCCCccCHHHHHHHHCcCHHHHHHHHHHHHhCCEE
Confidence 99999999999999999999999999999999999999 999999999999999999999999977777
Q ss_pred eeecCCCC---CCCCCCCeEEEccCCCCCceeEEec
Q 003835 671 VLQKLPKG---RDVEDDDSFVFNEGFTAPLYRIKVN 703 (792)
Q Consensus 671 iL~k~p~~---~~i~~~d~f~~N~~Ft~~~~riki~ 703 (792)
++.+.|++ .++.++|.|.+|.+|+++++|||||
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~N~~f~~~~~ki~vn 275 (276)
T d1ldja3 240 VLEDENANVDEVELKPDTLIKLYLGYKNKKLRVNIN 275 (276)
T ss_dssp ECSCTTCCTTTCCCCTTCEEEECSSCCCSSSSBCCC
T ss_pred EecCCCCCccccccCCCCEEEEecCCCCCCeEEEeC
Confidence 77666554 4678999999999999999999997
No 5
>d2hyec1 a.4.5.34 (C:676-759) Cullin-4A {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.96 E-value=8.7e-30 Score=217.28 Aligned_cols=84 Identities=76% Similarity=1.180 Sum_probs=81.6
Q ss_pred cchhhhhhhhHHHHhhhhhhhhHHHHHhhhcccccChHHHHHHHHHhcCCCCChHHHHHHHHHhhhhcccccCCCCCCce
Q 003835 709 ETVEENTSTTERVFQDRQYQVDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQIY 788 (792)
Q Consensus 709 et~~e~~~t~e~v~~dR~~~i~AaIVRIMK~rK~l~h~~Li~ev~~~lrF~~~~~~iKk~IE~LIereYl~Rd~~d~~~Y 788 (792)
|+++|+..+.++|.+||.+.|+||||||||+||+|+|++|+.+|+++|+|+|++++||+|||+|||||||+||++|+++|
T Consensus 1 e~~~e~~~~~~~v~~dR~~~i~AaIVRIMK~~k~l~h~eL~~~v~~~l~f~~~~~~iK~~Ie~LIereYi~R~~~~~~~y 80 (84)
T d2hyec1 1 ETVEEQVSTTERVFQDRQYQIDAAIVRIMKMRKTLGHNLLVSELYNQLKFPVKPGDLKKRIESLIDRDYMERDKDNPNQY 80 (84)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSEEETHHHHHHHHHHSSSCCCHHHHHHHHHHHHHTTSCBCCSSCTTEE
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhhHhhcCCCCCcee
Confidence 46778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecC
Q 003835 789 NYLA 792 (792)
Q Consensus 789 ~YlA 792 (792)
+|+|
T Consensus 81 ~Y~A 84 (84)
T d2hyec1 81 HYVA 84 (84)
T ss_dssp ECCC
T ss_pred eeeC
Confidence 9998
No 6
>d1ldja1 a.4.5.34 (A:687-776) Anaphase promoting complex (APC) {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.94 E-value=3.8e-28 Score=209.98 Aligned_cols=85 Identities=44% Similarity=0.667 Sum_probs=81.4
Q ss_pred ccchhhhhhhhHHHHhhhhhhhhHHHHHhhhcccccChHHHHHHHHHhc--CCCCChHHHHHHHHHhhhhcccccCCCCC
Q 003835 708 KETVEENTSTTERVFQDRQYQVDAAIVRIMKTRKVLSHTLLITELFQQL--KFPIKPADLKKRIESLIDREYLERDKNNP 785 (792)
Q Consensus 708 ket~~e~~~t~e~v~~dR~~~i~AaIVRIMK~rK~l~h~~Li~ev~~~l--rF~~~~~~iKk~IE~LIereYl~Rd~~d~ 785 (792)
+++.+|.+.|.+.|++||.+.|+||||||||++|+|+|++|+.+|++++ +|+|++.+||+|||.|||||||+||++|+
T Consensus 4 ~e~~~e~~~~~~~v~~dR~~~i~AaIVRIMK~~k~l~h~~L~~~v~~~l~~~F~p~~~~iK~~Ie~LIereYi~R~~~~~ 83 (90)
T d1ldja1 4 TEQKQEQETTHKNIEEDRKLLIQAAIVRIMKMRKVLKHQQLLGEVLTQLSSRFKPRVPVIKKCIDILIEKEYLERVDGEK 83 (90)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSEEEHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEECSSST
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhHHHhcCCCCC
Confidence 3567788889999999999999999999999999999999999999999 59999999999999999999999999999
Q ss_pred CceeecC
Q 003835 786 QIYNYLA 792 (792)
Q Consensus 786 ~~Y~YlA 792 (792)
++|+|+|
T Consensus 84 ~~y~YvA 90 (90)
T d1ldja1 84 DTYSYLA 90 (90)
T ss_dssp TEEEECC
T ss_pred ceeeeeC
Confidence 9999998
No 7
>d1iuya_ a.4.5.34 (A:) Cullin-3 homologue {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.93 E-value=8.8e-28 Score=209.14 Aligned_cols=87 Identities=45% Similarity=0.725 Sum_probs=81.8
Q ss_pred ccccchhhhhhhhHHHHhhhhhhhhHHHHHhhhcccccChHHHHHHHHHhc--CCCCChHHHHHHHHHhhhhcccccCCC
Q 003835 706 QMKETVEENTSTTERVFQDRQYQVDAAIVRIMKTRKVLSHTLLITELFQQL--KFPIKPADLKKRIESLIDREYLERDKN 783 (792)
Q Consensus 706 ~~ket~~e~~~t~e~v~~dR~~~i~AaIVRIMK~rK~l~h~~Li~ev~~~l--rF~~~~~~iKk~IE~LIereYl~Rd~~ 783 (792)
+.+++.+|++++.++|++||.+.|+||||||||++|+|+|++|+.+|++++ +|+|++.+||+|||.||+||||+||++
T Consensus 4 ~~~e~~~e~~~~~~~i~~dR~~~i~AaIVRIMK~~k~l~~~~L~~~v~~~l~~~F~p~~~~iK~~Ie~LIekeYi~R~~~ 83 (92)
T d1iuya_ 4 KQGESDPERKETRQKVDDDRKHEIEAAIVRIMKSRKKMQHNVLVAEVTQQLKARFLPSPVVIKKRIEGLIEREYLARTPE 83 (92)
T ss_dssp CCCCCCCCCCCCCSCSCCCTTTHHHHHHHHHHHHHCEEEHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHTTSEEECSS
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHhCcCCCCHHHHHHHHHHHHhhhhhhcCCC
Confidence 345677888899999999999999999999999999999999999999999 599999999999999999999999999
Q ss_pred CCCceeecC
Q 003835 784 NPQIYNYLA 792 (792)
Q Consensus 784 d~~~Y~YlA 792 (792)
|+++|+|+|
T Consensus 84 d~~~y~Y~A 92 (92)
T d1iuya_ 84 DRKVYTYVA 92 (92)
T ss_dssp CSSEEEEC-
T ss_pred CCCeeeeeC
Confidence 999999998
No 8
>d1jhfa1 a.4.5.2 (A:2-72) LexA repressor, N-terminal DNA-binding domain {Escherichia coli [TaxId: 562]}
Probab=79.84 E-value=1.6 Score=33.69 Aligned_cols=61 Identities=18% Similarity=0.198 Sum_probs=45.2
Q ss_pred hhhhhhhHHHHHhhhcccccChHHHHHHHHHhcCCCCChHHHHHHHHHhhhhcccccCCCCCCce
Q 003835 724 DRQYQVDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQIY 788 (792)
Q Consensus 724 dR~~~i~AaIVRIMK~rK~l~h~~Li~ev~~~lrF~~~~~~iKk~IE~LIereYl~Rd~~d~~~Y 788 (792)
.|+..|=.+|++..+.+..--- +.|+.+.+.|. ++..+...++.|.++|||+|+++.+..+
T Consensus 5 ~rQ~~vL~~I~~~~~~~G~~Ps---~rei~~~~g~~-S~stv~~~l~~Le~kG~I~r~~~~~R~i 65 (71)
T d1jhfa1 5 ARQQEVFDLIRDHISQTGMPPT---RAEIAQRLGFR-SPNAAEEHLKALARKGVIEIVSGASRGI 65 (71)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCC---HHHHHHHTTCS-SHHHHHHHHHHHHHTTSEEECSSSSSCE
T ss_pred HHHHHHHHHHHHHHHHhCCCCC---HHHHHHHcCCC-CHHHHHHHHHHHHHCcCeecCCCCCcee
Confidence 3555666777777777654443 45566677776 8999999999999999999998654433
No 9
>d1wi9a_ a.4.5.47 (A:) Hypothetical protein C20orf116 homolog {Mouse (Mus musculus) [TaxId: 10090]}
Probab=79.05 E-value=1.1 Score=34.54 Aligned_cols=56 Identities=18% Similarity=0.285 Sum_probs=49.4
Q ss_pred HHHHHhhhcccccChHHHHHHHHHhcCCCCChHHHHHHHHHhhhhcccccCCCCCCceeecC
Q 003835 731 AAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQIYNYLA 792 (792)
Q Consensus 731 AaIVRIMK~rK~l~h~~Li~ev~~~lrF~~~~~~iKk~IE~LIereYl~Rd~~d~~~Y~YlA 792 (792)
+..|+..|.+|.....||-.+ |....++...||..|.+.+=|.=-=+|+.-|.||.
T Consensus 10 ~~FI~~Ik~~Kvv~LedLAa~------F~lktqd~i~RIq~Le~~g~ltGViDDRGKfIyIS 65 (72)
T d1wi9a_ 10 TEFINYIKKSKVVLLEDLAFQ------MGLRTQDAINRIQDLLTEGTLTGVIDDRGKFIYIT 65 (72)
T ss_dssp HHHHHHHHHCSEECHHHHHHH------HCSCHHHHHHHHHHHHHHSSSCEEECTTCCEEECC
T ss_pred HHHHHHHHHCCEeeHHHHHHH------cCCcHHHHHHHHHHHHHCCCeeeEEcCCCCEEEEc
Confidence 456788899999988888765 99999999999999999999998888899999983
No 10
>d1mkma1 a.4.5.33 (A:1-75) Transcriptional regulator IclR, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=74.31 E-value=1.3 Score=34.55 Aligned_cols=35 Identities=9% Similarity=0.129 Sum_probs=31.7
Q ss_pred ccHHHHHHHhCCCHHHHHHHHHHhhcCCceeeecCCC
Q 003835 641 LSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLPK 677 (792)
Q Consensus 641 lt~~eI~~~T~i~~~eL~r~L~sL~~~k~kiL~k~p~ 677 (792)
+|+.||++.+|+|...+.|.|.+|. ....+.+.+.
T Consensus 21 ~s~~eia~~~~~~~st~~rll~tL~--~~g~l~~~~~ 55 (75)
T d1mkma1 21 VSVSEIAEKFNMSVSNAYKYMVVLE--EKGFVLRKKD 55 (75)
T ss_dssp BCHHHHHHHTTCCHHHHHHHHHHHH--HTTSEEECTT
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEECCC
Confidence 8999999999999999999999999 7888887653
No 11
>d1p6ra_ a.4.5.39 (A:) Penicillinase repressor BlaI {Bacillus licheniformis [TaxId: 1402]}
Probab=70.13 E-value=2.1 Score=33.96 Aligned_cols=61 Identities=15% Similarity=0.346 Sum_probs=47.4
Q ss_pred hhhHHHHHhhhcccccChHHHHHHHHHhcCCCCChHHHHHHHHHhhhhcccccCCCCCCceeec
Q 003835 728 QVDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQIYNYL 791 (792)
Q Consensus 728 ~i~AaIVRIMK~rK~l~h~~Li~ev~~~lrF~~~~~~iKk~IE~LIereYl~Rd~~d~~~Y~Yl 791 (792)
..+..|.+++=.++.++-.+++..+-+. ..-....|+.-+..|.+||||.|+... ..|.|-
T Consensus 9 ~~E~~IM~~lW~~~~~t~~ei~~~l~~~--~~~~~tTv~T~L~rL~~KG~l~~~k~g-r~~~Y~ 69 (82)
T d1p6ra_ 9 DAELEVMKVIWKHSSINTNEVIKELSKT--STWSPKTIQTMLLRLIKKGALNHHKEG-RVFVYT 69 (82)
T ss_dssp HHHHHHHHHHHTSSSEEHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTSEEEEEET-TEEEEE
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHhccc--cCCcHhHHHHHHHHHHHCCCeEEEecC-CeEEEE
Confidence 3567788888888888888877766543 455778999999999999999997654 357774
No 12
>d1i1ga1 a.4.5.32 (A:2-61) LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=65.88 E-value=4.5 Score=29.87 Aligned_cols=48 Identities=21% Similarity=0.340 Sum_probs=41.5
Q ss_pred hhhHHHHHhhhcccccChHHHHHHHHHhcCCCCChHHHHHHHHHhhhhcccccC
Q 003835 728 QVDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERD 781 (792)
Q Consensus 728 ~i~AaIVRIMK~rK~l~h~~Li~ev~~~lrF~~~~~~iKk~IE~LIereYl~Rd 781 (792)
.+|--|++++...-.++..+|-.++ -.+++.+..||..|.+.++|.|-
T Consensus 3 ~~D~kIl~~L~~n~r~s~~~lA~~~------gls~~~v~~Ri~~L~~~giI~~~ 50 (60)
T d1i1ga1 3 ERDKIILEILEKDARTPFTEIAKKL------GISETAVRKRVKALEEKGIIEGY 50 (60)
T ss_dssp SHHHHHHHHHHHCTTCCHHHHHHHH------TSCHHHHHHHHHHHHHHTSSCCC
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH------CcCHHHHHHHHHHHHHCCCeEeE
Confidence 4677899999999999998877664 56888999999999999999874
No 13
>d2cg4a1 a.4.5.32 (A:4-66) Regulatory protein AsnC {Escherichia coli [TaxId: 562]}
Probab=63.24 E-value=5.1 Score=29.81 Aligned_cols=47 Identities=13% Similarity=0.262 Sum_probs=41.5
Q ss_pred hhhHHHHHhhhcccccChHHHHHHHHHhcCCCCChHHHHHHHHHhhhhccccc
Q 003835 728 QVDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLER 780 (792)
Q Consensus 728 ~i~AaIVRIMK~rK~l~h~~Li~ev~~~lrF~~~~~~iKk~IE~LIereYl~R 780 (792)
.+|..|++.+...-.++..+|-..+ -.+++.+..||+.|.+.+.|.+
T Consensus 5 ~~D~~IL~~L~~~~r~s~~eiA~~l------~ls~~~v~~Ri~rL~~~GiI~~ 51 (63)
T d2cg4a1 5 NLDRGILEALMGNARTAYAELAKQF------GVSPETIHVRVEKMKQAGIITG 51 (63)
T ss_dssp HHHHHHHHHHHHCTTSCHHHHHHHH------TSCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH------CcCHHHHHHHHHHHHHCCCeEe
Confidence 4688899999999999999876654 6788999999999999999986
No 14
>d2g9wa1 a.4.5.39 (A:3-124) Hypothetical protein Rv1846c {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=62.04 E-value=2.6 Score=35.91 Aligned_cols=61 Identities=8% Similarity=0.151 Sum_probs=42.5
Q ss_pred hhhHHHHHhhhccc-ccChHHHHHHHHHhcCCCCChHHHHHHHHHhhhhcccccCCCCCCceeec
Q 003835 728 QVDAAIVRIMKTRK-VLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQIYNYL 791 (792)
Q Consensus 728 ~i~AaIVRIMK~rK-~l~h~~Li~ev~~~lrF~~~~~~iKk~IE~LIereYl~Rd~~d~~~Y~Yl 791 (792)
..+..|.++.=... .++-.+++..+-+ ..++....++.-+..|.+||||+|.... ..|.|-
T Consensus 7 ~~E~~IM~~lW~~g~~~t~~eI~~~l~~--~~~~~~sTV~T~L~rL~~Kg~l~~~~~g-r~~~Y~ 68 (122)
T d2g9wa1 7 DLERAVMDHLWSRTEPQTVRQVHEALSA--RRDLAYTTVMAVLQRLAKKNLVLQIRDD-RAHRYA 68 (122)
T ss_dssp HHHHHHHHHHHTCSSCEEHHHHHHHHTT--TCCCCHHHHHHHHHHHHHTTSEEEEC----CCEEE
T ss_pred HHHHHHHHHHHcCCCCccHHHHHHHHhc--cCCCcHHHHHHHHHHHHHCCCEEEeecC-CeEEEE
Confidence 45667777775554 4666665555422 2567899999999999999999998654 357774
No 15
>d1okra_ a.4.5.39 (A:) Methicillin resistance regulatory protein MecI {Staphylococcus aureus [TaxId: 1280]}
Probab=61.57 E-value=3.1 Score=35.18 Aligned_cols=60 Identities=23% Similarity=0.449 Sum_probs=44.4
Q ss_pred hHHHHHhhhcccccChHHHHHHHHHhcCCCCChHHHHHHHHHhhhhcccccCCCCCCceeecC
Q 003835 730 DAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQIYNYLA 792 (792)
Q Consensus 730 ~AaIVRIMK~rK~l~h~~Li~ev~~~lrF~~~~~~iKk~IE~LIereYl~Rd~~d~~~Y~YlA 792 (792)
|-.|.++.=....++-.+++..+... ...+...+..-+..|.+||||+|..++ ..|.|.|
T Consensus 9 E~~VM~~lW~~~~~t~~ei~~~l~~~--~~~~~sTv~t~L~rL~~Kg~l~r~~~g-r~~~Y~~ 68 (120)
T d1okra_ 9 EWEVMNIIWMKKYASANNIIEEIQMQ--KDWSPKTIRTLITRLYKKGFIDRKKDN-KIFQYYS 68 (120)
T ss_dssp HHHHHHHHHHHSSEEHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHTSEEEEEET-TEEEEEE
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHhcc--cCccHHhHHHHHHHHHHCCCeEEEecC-CceEEee
Confidence 34455555566777777776666443 678899999999999999999998754 4577754
No 16
>d2cfxa1 a.4.5.32 (A:1-63) Transcriptional regulator LrpC {Bacillus subtilis [TaxId: 1423]}
Probab=59.97 E-value=6.6 Score=29.19 Aligned_cols=47 Identities=21% Similarity=0.340 Sum_probs=41.3
Q ss_pred hhhHHHHHhhhcccccChHHHHHHHHHhcCCCCChHHHHHHHHHhhhhccccc
Q 003835 728 QVDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLER 780 (792)
Q Consensus 728 ~i~AaIVRIMK~rK~l~h~~Li~ev~~~lrF~~~~~~iKk~IE~LIereYl~R 780 (792)
.+|..|+.++...-+++..+|-.++ -.+++.+.+||..|.+.++|.|
T Consensus 5 ~~D~~IL~~L~~n~r~s~~~iA~~l------gis~~tv~~Ri~~L~~~giI~~ 51 (63)
T d2cfxa1 5 QIDLNIIEELKKDSRLSMRELGRKI------KLSPPSVTERVRQLESFGIIKQ 51 (63)
T ss_dssp HHHHHHHHHHHHCSCCCHHHHHHHH------TCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH------CcCHHHHHHHHHHHHHCCCeee
Confidence 4788999999999999988877665 5677899999999999999987
No 17
>d2cyya1 a.4.5.32 (A:5-64) Putative transcriptional regulator PH1519 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=56.39 E-value=8.6 Score=28.13 Aligned_cols=48 Identities=13% Similarity=0.246 Sum_probs=42.1
Q ss_pred hhhHHHHHhhhcccccChHHHHHHHHHhcCCCCChHHHHHHHHHhhhhcccccC
Q 003835 728 QVDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERD 781 (792)
Q Consensus 728 ~i~AaIVRIMK~rK~l~h~~Li~ev~~~lrF~~~~~~iKk~IE~LIereYl~Rd 781 (792)
.+|..|++.+...-.++..+|-.++ -.+...+..||..|.+.+.|.|-
T Consensus 3 ~~D~~Il~~L~~n~r~s~~eiA~~l------~ls~~~v~~Ri~~L~~~giI~~~ 50 (60)
T d2cyya1 3 EIDKKIIKILQNDGKAPLREISKIT------GLAESTIHERIRKLRESGVIKKF 50 (60)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHH------CSCHHHHHHHHHHHHHHTSSCCC
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH------CcCHHHHHHHHHHHHHCCCeEeE
Confidence 4688999999999999998877765 67889999999999999999974
No 18
>d1tw3a1 a.4.5.29 (A:14-98) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}
Probab=49.39 E-value=6.8 Score=30.95 Aligned_cols=42 Identities=19% Similarity=0.283 Sum_probs=32.9
Q ss_pred ccHHHHHHHhCCCHHHHHHHHHHhhcCCceeeecCCCCCCCCCCCeEEEcc
Q 003835 641 LSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLPKGRDVEDDDSFVFNE 691 (792)
Q Consensus 641 lt~~eI~~~T~i~~~eL~r~L~sL~~~k~kiL~k~p~~~~i~~~d~f~~N~ 691 (792)
.|++||++.+|++++-+.|.|..|+ -.+++.+.. ++.|..|+
T Consensus 35 ~s~~eLA~~~g~~~~~l~rlLr~l~--a~gl~~e~~-------~~~y~lt~ 76 (85)
T d1tw3a1 35 RTVKALAARTDTRPEALLRLIRHLV--AIGLLEEDA-------PGEFVPTE 76 (85)
T ss_dssp CBHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEEE-------TTEEEECT
T ss_pred CCHHHHHHHhCcChhHHHHHHHHHH--HCCCeEecC-------CCeEecCH
Confidence 7999999999999999999999998 556665422 34666554
No 19
>d1ub9a_ a.4.5.28 (A:) Hypothetical protein PH1061 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=49.06 E-value=9.5 Score=30.63 Aligned_cols=57 Identities=12% Similarity=0.152 Sum_probs=44.2
Q ss_pred hhhHHHHHhhhcccccChHHHHHHHHHhcCCCCChHHHHHHHHHhhhhccccc--CCCCCCceee
Q 003835 728 QVDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLER--DKNNPQIYNY 790 (792)
Q Consensus 728 ~i~AaIVRIMK~rK~l~h~~Li~ev~~~lrF~~~~~~iKk~IE~LIereYl~R--d~~d~~~Y~Y 790 (792)
..+..|..++..+..++..+|-.. +..+.+.+-+.+..|.+.||++| ++.|+....|
T Consensus 16 p~r~~IL~~L~~~~~~~~~eLa~~------l~is~~~vs~~l~~L~~~glV~~~~~~~d~r~~~~ 74 (100)
T d1ub9a_ 16 PVRLGIMIFLLPRRKAPFSQIQKV------LDLTPGNLDSHIRVLERNGLVKTYKVIADRPRTVV 74 (100)
T ss_dssp HHHHHHHHHHHHHSEEEHHHHHHH------TTCCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEE
T ss_pred HHHHHHHHHhccCCCeeHHHHHHH------HhhccccccHHHHHHhhhceeEEEEcCcCCccccc
Confidence 456778888888888888877554 68899999999999999999987 4445544433
No 20
>d1u2wa1 a.4.5.5 (A:12-119) Cadmium efflux system accessory protein CadC {Staphylococcus aureus [TaxId: 1280]}
Probab=46.64 E-value=9.2 Score=31.61 Aligned_cols=45 Identities=20% Similarity=0.286 Sum_probs=34.8
Q ss_pred ccHHHHHHHhCCCHHHHHHHHHHhhcCCceeeecCCCCCCCCCCCeEEEcc
Q 003835 641 LSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLPKGRDVEDDDSFVFNE 691 (792)
Q Consensus 641 lt~~eI~~~T~i~~~eL~r~L~sL~~~k~kiL~k~p~~~~i~~~d~f~~N~ 691 (792)
+|+.||++.+|++...+-++|.-|. ..+++.....|+.+ .|++|.
T Consensus 46 ~~v~ela~~l~~s~s~vS~HL~~L~--~aGlv~~~r~G~~~----~Y~l~~ 90 (108)
T d1u2wa1 46 LCVCDIANILGVTIANASHHLRTLY--KQGVVNFRKEGKLA----LYSLGD 90 (108)
T ss_dssp EEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEC----CC----EEEESC
T ss_pred ccHHHHHHHHccChhHHHHHHHHHH--HCCeeEEEEECCEE----EEEECH
Confidence 6889999999999999999999998 78888877665443 566665
No 21
>d1sd4a_ a.4.5.39 (A:) Penicillinase repressor BlaI {Staphylococcus aureus [TaxId: 1280]}
Probab=45.96 E-value=7.6 Score=32.85 Aligned_cols=60 Identities=20% Similarity=0.355 Sum_probs=42.4
Q ss_pred hHHHHHhhhcccccChHHHHHHHHHhcCCCCChHHHHHHHHHhhhhcccccCCCCCCceeecC
Q 003835 730 DAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQIYNYLA 792 (792)
Q Consensus 730 ~AaIVRIMK~rK~l~h~~Li~ev~~~lrF~~~~~~iKk~IE~LIereYl~Rd~~d~~~Y~YlA 792 (792)
+.-|.+|.=.+..++-.|++..+-+ ..+.....|..-+..|.+||||.|...+ ..|.|-|
T Consensus 8 E~~VM~~lW~~~~~t~~ei~~~l~~--~~~~~~tTv~T~L~rL~~Kg~l~~~~~g-r~~~Y~~ 67 (122)
T d1sd4a_ 8 EWDVMNIIWDKKSVSANEIVVEIQK--YKEVSDKTIRTLITRLYKKEIIKRYKSE-NIYFYSS 67 (122)
T ss_dssp HHHHHHHHHHSSSEEHHHHHHHHHT--TSCCCHHHHHHHHHHHHHTTSEEEEEET-TEEEEEE
T ss_pred HHHHHHHHHcCCCCCHHHHHHHhhc--cCCCcHhHHHHHHHHHHhhhceeeeccC-CeEEEee
Confidence 3345555556667776666555432 4667899999999999999999987654 4678754
No 22
>d1r1ua_ a.4.5.5 (A:) Metal-sensing transcriptional repressor CzrA {Staphylococcus aureus [TaxId: 1280]}
Probab=45.41 E-value=6.4 Score=31.83 Aligned_cols=45 Identities=13% Similarity=0.333 Sum_probs=35.3
Q ss_pred ccHHHHHHHhCCCHHHHHHHHHHhhcCCceeeecCCCCCCCCCCCeEEEcc
Q 003835 641 LSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLPKGRDVEDDDSFVFNE 691 (792)
Q Consensus 641 lt~~eI~~~T~i~~~eL~r~L~sL~~~k~kiL~k~p~~~~i~~~d~f~~N~ 691 (792)
+++.||++.+|++...+-++|.-|. ..+|+.....|+.+ .|++|.
T Consensus 32 ~~v~el~~~l~~s~~~vS~HL~~L~--~~glv~~~r~G~~~----~Y~l~~ 76 (94)
T d1r1ua_ 32 ASVGHISHQLNLSQSNVSHQLKLLK--SVHLVKAKRQGQSM----IYSLDD 76 (94)
T ss_dssp BCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEEEETTEE----EEEESS
T ss_pred ccHHHHHHHHCCCHHHHHHHHHHHH--HCCceEEEEECCEE----EEEECc
Confidence 6899999999999999999999998 67777665544333 455553
No 23
>d1r1ta_ a.4.5.5 (A:) SmtB repressor {Cyanobacteria (Synechococcus), pcc7942 [TaxId: 1129]}
Probab=44.30 E-value=6.7 Score=31.91 Aligned_cols=45 Identities=24% Similarity=0.511 Sum_probs=35.7
Q ss_pred ccHHHHHHHhCCCHHHHHHHHHHhhcCCceeeecCCCCCCCCCCCeEEEcc
Q 003835 641 LSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLPKGRDVEDDDSFVFNE 691 (792)
Q Consensus 641 lt~~eI~~~T~i~~~eL~r~L~sL~~~k~kiL~k~p~~~~i~~~d~f~~N~ 691 (792)
.|+.||++.+|++...+-.+|.-|. +.+++.....|+.+ .|++|.
T Consensus 37 ~~v~ela~~l~is~stvS~HL~~L~--~aglV~~~r~G~~~----~Y~l~~ 81 (98)
T d1r1ta_ 37 LCVGDLAQAIGVSESAVSHQLRSLR--NLRLVSYRKQGRHV----YYQLQD 81 (98)
T ss_dssp BCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEEEETTEE----EEEESS
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHHH--HCCceEEEEECCEE----EEEECh
Confidence 5889999999999999999999998 77888765554333 455554
No 24
>d1lvaa3 a.4.5.35 (A:511-574) C-terminal fragment of elongation factor SelB {Moorella thermoacetica [TaxId: 1525]}
Probab=43.53 E-value=12 Score=27.90 Aligned_cols=32 Identities=28% Similarity=0.433 Sum_probs=28.2
Q ss_pred ccHHHHHHHhCCCHHHHHHHHHHhhcCCceeeec
Q 003835 641 LSFQDIKDATGIEDKELRRTLQSLACGKVRVLQK 674 (792)
Q Consensus 641 lt~~eI~~~T~i~~~eL~r~L~sL~~~k~kiL~k 674 (792)
-++.||++.+|+++++++..|.-|+ +.+.|.|
T Consensus 24 P~vrdl~~~l~~~e~~~~~lL~~l~--~~G~lvk 55 (64)
T d1lvaa3 24 PSFKEVAGSFNLDPSELEELLHYLV--REGVLVK 55 (64)
T ss_dssp CBHHHHHHHTTCCHHHHHHHHHHHH--HTTSEEE
T ss_pred CcHHHHHHHhCCCHHHHHHHHHHHH--HCCCEEE
Confidence 6899999999999999999999998 6666655
No 25
>d1l0oc_ a.4.13.2 (C:) SigmaF {Bacillus stearothermophilus [TaxId: 1422]}
Probab=40.88 E-value=10 Score=27.55 Aligned_cols=23 Identities=17% Similarity=0.315 Sum_probs=20.8
Q ss_pred ccHHHHHHHhCCCHHHHHHHHHH
Q 003835 641 LSFQDIKDATGIEDKELRRTLQS 663 (792)
Q Consensus 641 lt~~eI~~~T~i~~~eL~r~L~s 663 (792)
-|.+||++.+||+.+++...|.+
T Consensus 32 PT~~EiA~~l~~~~e~V~~~l~a 54 (57)
T d1l0oc_ 32 PTVTEIADHLGISPEDVVLAQEA 54 (57)
T ss_dssp CBHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHH
Confidence 58999999999999999988865
No 26
>d1lnwa_ a.4.5.28 (A:) MexR repressor {Pseudomonas aeruginosa [TaxId: 287]}
Probab=40.36 E-value=22 Score=30.13 Aligned_cols=52 Identities=15% Similarity=0.281 Sum_probs=37.9
Q ss_pred hhHHHHHhhhcccccChHHHHHHHHHhcCCCCChHHHHHHHHHhhhhccccc--CCCCCC
Q 003835 729 VDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLER--DKNNPQ 786 (792)
Q Consensus 729 i~AaIVRIMK~rK~l~h~~Li~ev~~~lrF~~~~~~iKk~IE~LIereYl~R--d~~d~~ 786 (792)
-+..|...+.....++-.+|... ...+.+.+-+.|..|.++|||+| +++|+.
T Consensus 37 ~q~~vL~~l~~~~~~t~~~la~~------l~~~~~~vsr~l~~L~~~G~v~r~~~~~D~R 90 (141)
T d1lnwa_ 37 PDVHVLKLIDEQRGLNLQDLGRQ------MCRDKALITRKIRELEGRNLVRRERNPSDQR 90 (141)
T ss_dssp HHHHHHHHHHSSTTCBHHHHHHH------TTCCHHHHHHHHHHHHHTTSEEEEECSSSSS
T ss_pred HHHHHHHHHHHCCCCCHHHHHHH------HCccHhHHHHHHHHHHHhhceeeeccCCCCc
Confidence 35556666666666666555443 57888999999999999999998 455553
No 27
>d1i1ga1 a.4.5.32 (A:2-61) LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=38.26 E-value=8.9 Score=28.10 Aligned_cols=31 Identities=19% Similarity=0.520 Sum_probs=27.6
Q ss_pred ccHHHHHHHhCCCHHHHHHHHHHhhcCCceeee
Q 003835 641 LSFQDIKDATGIEDKELRRTLQSLACGKVRVLQ 673 (792)
Q Consensus 641 lt~~eI~~~T~i~~~eL~r~L~sL~~~k~kiL~ 673 (792)
+|+.+|++.+|++...+.+.++.|. +.+|+.
T Consensus 18 ~s~~~lA~~~gls~~~v~~Ri~~L~--~~giI~ 48 (60)
T d1i1ga1 18 TPFTEIAKKLGISETAVRKRVKALE--EKGIIE 48 (60)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHH--HHTSSC
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHH--HCCCeE
Confidence 8999999999999999999999998 555654
No 28
>d2cfxa1 a.4.5.32 (A:1-63) Transcriptional regulator LrpC {Bacillus subtilis [TaxId: 1423]}
Probab=37.20 E-value=12 Score=27.67 Aligned_cols=31 Identities=10% Similarity=0.314 Sum_probs=27.6
Q ss_pred ccHHHHHHHhCCCHHHHHHHHHHhhcCCceeee
Q 003835 641 LSFQDIKDATGIEDKELRRTLQSLACGKVRVLQ 673 (792)
Q Consensus 641 lt~~eI~~~T~i~~~eL~r~L~sL~~~k~kiL~ 673 (792)
+|+.||++.+|++...+.+.++.|. +.+|+.
T Consensus 20 ~s~~~iA~~lgis~~tv~~Ri~~L~--~~giI~ 50 (63)
T d2cfxa1 20 LSMRELGRKIKLSPPSVTERVRQLE--SFGIIK 50 (63)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEE
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHH--HCCCee
Confidence 8999999999999999999999998 555554
No 29
>d1sfxa_ a.4.5.50 (A:) Hypothetical protein AF2008 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=35.67 E-value=13 Score=30.50 Aligned_cols=59 Identities=19% Similarity=0.321 Sum_probs=44.0
Q ss_pred hhhHHHHHhhhcccccChHHHHHHHHHhcCCCCChHHHHHHHHHhhhhcccccC--CCCCCceeecC
Q 003835 728 QVDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERD--KNNPQIYNYLA 792 (792)
Q Consensus 728 ~i~AaIVRIMK~rK~l~h~~Li~ev~~~lrF~~~~~~iKk~IE~LIereYl~Rd--~~d~~~Y~YlA 792 (792)
.-||.|-..+-.+..++-.+|-.. .-.+.+.+-..++.|.++||++|. ++|...|.|.|
T Consensus 20 ~~e~~v~~~L~~~g~~t~~eia~~------~~i~~~~v~~~l~~L~~~GlV~r~~~~~~~r~~~~~a 80 (109)
T d1sfxa_ 20 PSDVRIYSLLLERGGMRVSEIARE------LDLSARFVRDRLKVLLKRGFVRREIVEKGWVGYIYSA 80 (109)
T ss_dssp HHHHHHHHHHHHHCCBCHHHHHHH------HTCCHHHHHHHHHHHHHTTSEEEEEEESSSEEEEEEE
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHH------hCCCcchHHHHHHHHHhCCCEEEEeccCCCccccccC
Confidence 467777777777888887765554 357788899999999999999984 44555666643
No 30
>d1z05a1 a.4.5.63 (A:10-80) Transcriptional regulator VC2007 N-terminal domain {Vibrio cholerae [TaxId: 666]}
Probab=33.87 E-value=19 Score=26.95 Aligned_cols=45 Identities=20% Similarity=0.346 Sum_probs=39.5
Q ss_pred HHHHHhhhcccccChHHHHHHHHHhcCCCCChHHHHHHHHHhhhhcccccC
Q 003835 731 AAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERD 781 (792)
Q Consensus 731 AaIVRIMK~rK~l~h~~Li~ev~~~lrF~~~~~~iKk~IE~LIereYl~Rd 781 (792)
+.|.+++..+..++-.||-.. .-.+++.+-+.+..|++.++|+..
T Consensus 9 ~~Il~~l~~~g~~sr~eLa~~------~glS~~Tv~~~l~~L~~~Glv~e~ 53 (71)
T d1z05a1 9 GRVYKLIDQKGPISRIDLSKE------SELAPASITKITRELIDAHLIHET 53 (71)
T ss_dssp HHHHHHHHHHCSBCHHHHHHH------HTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHcCCcCHHHHHHH------HCCCHHHHHHHHHHHHHCCCEEEe
Confidence 579999999999999998776 478889999999999999999864
No 31
>d2d1ha1 a.4.5.50 (A:1-109) Hypothetical transcriptional regulator ST1889 {Sulfolobus tokodaii [TaxId: 111955]}
Probab=33.62 E-value=15 Score=29.82 Aligned_cols=49 Identities=18% Similarity=0.382 Sum_probs=36.0
Q ss_pred hhHHHH-HhhhcccccChHHHHHHHHHhcCCCCChHHHHHHHHHhhhhcccccCCC
Q 003835 729 VDAAIV-RIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKN 783 (792)
Q Consensus 729 i~AaIV-RIMK~rK~l~h~~Li~ev~~~lrF~~~~~~iKk~IE~LIereYl~Rd~~ 783 (792)
.+..|- .+++....++-.+|-.. +-.+++.+-+.|..|.++|||+|.++
T Consensus 22 ~~~~iL~~L~~~~~~~t~~eLa~~------~~i~~~tvs~~l~~L~~~GlV~r~~~ 71 (109)
T d2d1ha1 22 TDVAVLLKMVEIEKPITSEELADI------FKLSKTTVENSLKKLIELGLVVRTKT 71 (109)
T ss_dssp HHHHHHHHHHHHCSCEEHHHHHHH------HTCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHH------HCccHhHHHHHHHHHHHCCCEEEeec
Confidence 344444 45567777887765543 57788899999999999999998543
No 32
>d2cyya1 a.4.5.32 (A:5-64) Putative transcriptional regulator PH1519 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=33.61 E-value=12 Score=27.30 Aligned_cols=31 Identities=16% Similarity=0.454 Sum_probs=27.5
Q ss_pred ccHHHHHHHhCCCHHHHHHHHHHhhcCCceeee
Q 003835 641 LSFQDIKDATGIEDKELRRTLQSLACGKVRVLQ 673 (792)
Q Consensus 641 lt~~eI~~~T~i~~~eL~r~L~sL~~~k~kiL~ 673 (792)
+|+.||++.+|++...+.+.++.|. +.+|+.
T Consensus 18 ~s~~eiA~~l~ls~~~v~~Ri~~L~--~~giI~ 48 (60)
T d2cyya1 18 APLREISKITGLAESTIHERIRKLR--ESGVIK 48 (60)
T ss_dssp CCHHHHHHHHCSCHHHHHHHHHHHH--HHTSSC
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHH--HCCCeE
Confidence 7999999999999999999999997 555554
No 33
>d2cg4a1 a.4.5.32 (A:4-66) Regulatory protein AsnC {Escherichia coli [TaxId: 562]}
Probab=33.21 E-value=13 Score=27.29 Aligned_cols=31 Identities=3% Similarity=0.344 Sum_probs=27.4
Q ss_pred ccHHHHHHHhCCCHHHHHHHHHHhhcCCceeee
Q 003835 641 LSFQDIKDATGIEDKELRRTLQSLACGKVRVLQ 673 (792)
Q Consensus 641 lt~~eI~~~T~i~~~eL~r~L~sL~~~k~kiL~ 673 (792)
+|+.||++.+|++...+.+.+..|. +.+|+.
T Consensus 20 ~s~~eiA~~l~ls~~~v~~Ri~rL~--~~GiI~ 50 (63)
T d2cg4a1 20 TAYAELAKQFGVSPETIHVRVEKMK--QAGIIT 50 (63)
T ss_dssp SCHHHHHHHHTSCHHHHHHHHHHHH--HHTSEE
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHH--HCCCeE
Confidence 8999999999999999999999998 555554
No 34
>d1ylfa1 a.4.5.55 (A:5-142) Hypothetical protein BC1842 {Bacillus cereus [TaxId: 1396]}
Probab=32.25 E-value=14 Score=31.66 Aligned_cols=33 Identities=6% Similarity=0.083 Sum_probs=29.9
Q ss_pred ccHHHHHHHhCCCHHHHHHHHHHhhcCCceeeecC
Q 003835 641 LSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKL 675 (792)
Q Consensus 641 lt~~eI~~~T~i~~~eL~r~L~sL~~~k~kiL~k~ 675 (792)
+|.++|++.+|+|..-|.+.|+.|. +..++...
T Consensus 24 vss~~IA~~~~i~~~~l~kil~~L~--~aGlv~S~ 56 (138)
T d1ylfa1 24 CTSDYMAESVNTNPVVIRKIMSYLK--QAGFVYVN 56 (138)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHH--HTTSEEEC
T ss_pred CcHHHHHHHHCcCHHHHHHHHHHHH--HCCCeEee
Confidence 7899999999999999999999998 88888654
No 35
>d1jgsa_ a.4.5.28 (A:) Multiple antibiotic resistance repressor, MarR {Escherichia coli [TaxId: 562]}
Probab=31.89 E-value=27 Score=29.37 Aligned_cols=52 Identities=12% Similarity=0.298 Sum_probs=40.1
Q ss_pred hhHHHHHhhhcccccChHHHHHHHHHhcCCCCChHHHHHHHHHhhhhccccc--CCCCCC
Q 003835 729 VDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLER--DKNNPQ 786 (792)
Q Consensus 729 i~AaIVRIMK~rK~l~h~~Li~ev~~~lrF~~~~~~iKk~IE~LIereYl~R--d~~d~~ 786 (792)
-+..+..+.-....++..+|..+ ...+.+.+-+.|..|.++|||+| +++|+.
T Consensus 35 ~q~~vL~~l~~~~~~t~~ela~~------~~i~~~~vs~~v~~L~~~glv~r~~~~~D~R 88 (138)
T d1jgsa_ 35 AQFKVLCSIRCAACITPVELKKV------LSVDLGALTRMLDRLVCKGWVERLPNPNDKR 88 (138)
T ss_dssp HHHHHHHHHHHHSSBCHHHHHHH------HTCCHHHHHHHHHHHHHTTSEEEEECTTCSS
T ss_pred HHHHHHHhHHhCcCCCHHHHHHH------HCCCHhHHHHHHHHHhhCCCEEEeeccCCCC
Confidence 45566666666778888777665 46788999999999999999998 555543
No 36
>d1qzza1 a.4.5.29 (A:10-101) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}
Probab=30.40 E-value=20 Score=28.49 Aligned_cols=34 Identities=24% Similarity=0.274 Sum_probs=30.2
Q ss_pred ccHHHHHHHhCCCHHHHHHHHHHhhcCCceeeecCC
Q 003835 641 LSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLP 676 (792)
Q Consensus 641 lt~~eI~~~T~i~~~eL~r~L~sL~~~k~kiL~k~p 676 (792)
+|.+||++.||++..-+.|-|..|+ -.+|+.+..
T Consensus 41 ~t~~eLA~~~g~~~~~l~rLlr~L~--a~gll~~~~ 74 (92)
T d1qzza1 41 DTLAGLADRTDTHPQALSRLVRHLT--VVGVLEGGE 74 (92)
T ss_dssp CSHHHHHHHHTCCHHHHHHHHHHHH--HTTSEECCC
T ss_pred CCHHHHHHHHCcCchHHHHHHHHHH--HCCCeeeec
Confidence 7999999999999999999999998 677887644
No 37
>d1fy7a_ d.108.1.1 (A:) Histone acetyltransferase ESA1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=30.06 E-value=13 Score=35.78 Aligned_cols=25 Identities=16% Similarity=0.403 Sum_probs=24.1
Q ss_pred ccHHHHHHHhCCCHHHHHHHHHHhh
Q 003835 641 LSFQDIKDATGIEDKELRRTLQSLA 665 (792)
Q Consensus 641 lt~~eI~~~T~i~~~eL~r~L~sL~ 665 (792)
+|+++|+++|||..+|+..+|++|-
T Consensus 207 isi~~is~~T~i~~~Dii~tL~~l~ 231 (273)
T d1fy7a_ 207 ITIDEISSMTSMTTTDILHTAKTLN 231 (273)
T ss_dssp EEHHHHHHHHCBCHHHHHHHHHHHT
T ss_pred ccHHHHHHhcCCCHHHHHHHHHHCC
Confidence 8999999999999999999999996
No 38
>d1jhfa1 a.4.5.2 (A:2-72) LexA repressor, N-terminal DNA-binding domain {Escherichia coli [TaxId: 562]}
Probab=27.25 E-value=23 Score=26.69 Aligned_cols=34 Identities=18% Similarity=0.289 Sum_probs=29.5
Q ss_pred ccHHHHHHHhCC-CHHHHHHHHHHhhcCCceeeecCC
Q 003835 641 LSFQDIKDATGI-EDKELRRTLQSLACGKVRVLQKLP 676 (792)
Q Consensus 641 lt~~eI~~~T~i-~~~eL~r~L~sL~~~k~kiL~k~p 676 (792)
-|+.||++..|+ +...+.++|..|. +-..|.+.|
T Consensus 25 Ps~rei~~~~g~~S~stv~~~l~~Le--~kG~I~r~~ 59 (71)
T d1jhfa1 25 PTRAEIAQRLGFRSPNAAEEHLKALA--RKGVIEIVS 59 (71)
T ss_dssp CCHHHHHHHTTCSSHHHHHHHHHHHH--HTTSEEECS
T ss_pred CCHHHHHHHcCCCCHHHHHHHHHHHH--HCcCeecCC
Confidence 589999999999 7899999999998 667777765
No 39
>d1nkta2 a.172.1.1 (A:616-835) Helical scaffold and wing domains of SecA {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=25.49 E-value=2.2e+02 Score=25.33 Aligned_cols=63 Identities=19% Similarity=0.346 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCcccHHHHHHHHHHHHhccccchHHHHHHHHH
Q 003835 174 VVFLSLVERCWQDLCDQMLMIRGIALYLDRTYVKQTPNVRSLWDMGLQLFRKYLSSYSEVEHKTVTGLL 242 (792)
Q Consensus 174 ~~~L~~~~~~W~~~~~~l~~i~~iF~YLDR~Yv~~~~~~~sI~dlgL~lFr~~v~~~~~l~~~l~~~iL 242 (792)
..+|..+...|.+|-..|..|+.--.- |.|-.+.| +..=..-|..+|.+.+- .++..++..++
T Consensus 154 ~v~L~~ID~~W~eHL~~Md~LR~gI~L--R~ygQkDP-l~EYK~Eaf~lF~~m~~---~i~~~vi~~l~ 216 (220)
T d1nkta2 154 NVLLNVIDRKWREHLYEMDYLKEGIGL--RAMAQRDP-LVEYQREGYDMFMAMLD---GMKEESVGFLF 216 (220)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHGG--GCBTTBCH-HHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHhHHhHHHHHHHHHHHHHHHH--HHHccCCh-HHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 478999999999999999999975432 44544433 23333457888877663 46666655554
No 40
>d2etha1 a.4.5.28 (A:1-140) Putative transcriptional regulator TM0816 {Thermotoga maritima [TaxId: 2336]}
Probab=25.29 E-value=49 Score=27.58 Aligned_cols=50 Identities=10% Similarity=0.058 Sum_probs=35.9
Q ss_pred hHHHHHhhhcccccChHHHHHHHHHhcCCCCChHHHHHHHHHhhhhccccc--CCCCC
Q 003835 730 DAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLER--DKNNP 785 (792)
Q Consensus 730 ~AaIVRIMK~rK~l~h~~Li~ev~~~lrF~~~~~~iKk~IE~LIereYl~R--d~~d~ 785 (792)
+..|.-.......++..+|-.. +..+.+.+-+.|..|.++|||+| ++.|+
T Consensus 34 q~~iL~~l~~~~~~t~~~La~~------l~i~~~~vs~~v~~L~~~gli~r~~~~~D~ 85 (140)
T d2etha1 34 ELYAFLYVALFGPKKMKEIAEF------LSTTKSNVTNVVDSLEKRGLVVREMDPVDR 85 (140)
T ss_dssp HHHHHHHHHHHCCBCHHHHHHH------TTSCHHHHHHHHHHHHHTTSEEEEECTTTS
T ss_pred HHHHHHHHHHcCCcCHHHHHHH------HCcCHHHHHHHHHHHHHCCCeeeeeccccc
Confidence 3344444455566776665543 77889999999999999999999 44454
No 41
>d1fp2a1 a.4.5.29 (A:8-108) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}
Probab=23.94 E-value=15 Score=29.87 Aligned_cols=44 Identities=16% Similarity=0.386 Sum_probs=30.4
Q ss_pred ccHHHHHHHhCCCH---HHHHHHHHHhhcCCceeeecCCCCCCCCCCCeEEEcc
Q 003835 641 LSFQDIKDATGIED---KELRRTLQSLACGKVRVLQKLPKGRDVEDDDSFVFNE 691 (792)
Q Consensus 641 lt~~eI~~~T~i~~---~eL~r~L~sL~~~k~kiL~k~p~~~~i~~~d~f~~N~ 691 (792)
+|.+||++.+|++. .-|.|.|.-|+ -.+|+....+ ++.+|..++
T Consensus 45 ~t~~eLa~~~~~~~~~~~~L~RlLR~L~--~~gi~~~~~~-----~~~~Y~lt~ 91 (101)
T d1fp2a1 45 ISLSNLVSILQVPSSKIGNVRRLMRYLA--HNGFFEIITK-----EEESYALTV 91 (101)
T ss_dssp EEHHHHHHHHTCCGGGHHHHHHHHHHHH--HTTSEEEEES-----SSEEEEECH
T ss_pred CCHHHHHHHcCCCCccchHHHHHHHHHH--hCCceeeecC-----CCCeEecCH
Confidence 78999999999965 34788888888 5566654221 234676654
No 42
>d1xd7a_ a.4.5.55 (A:) Hypothetical protein ywnA {Bacillus subtilis [TaxId: 1423]}
Probab=23.68 E-value=26 Score=29.23 Aligned_cols=32 Identities=25% Similarity=0.284 Sum_probs=28.9
Q ss_pred ccHHHHHHHhCCCHHHHHHHHHHhhcCCceeeec
Q 003835 641 LSFQDIKDATGIEDKELRRTLQSLACGKVRVLQK 674 (792)
Q Consensus 641 lt~~eI~~~T~i~~~eL~r~L~sL~~~k~kiL~k 674 (792)
+|-++|++.+|+|..-+++.|+.|. |.+++..
T Consensus 19 ~ss~~IA~~~~~~~~~v~kIl~~L~--~aglV~s 50 (127)
T d1xd7a_ 19 TSSEIIADSVNTNPVVVRRMISLLK--KADILTS 50 (127)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHH--HTTSEEC
T ss_pred CCHHHHHHHhCcCHHHHHHHHHHHH--HhCcccc
Confidence 6889999999999999999999998 7777753
No 43
>d1dpua_ a.4.5.16 (A:) C-terminal domain of RPA32 {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.52 E-value=33 Score=25.79 Aligned_cols=26 Identities=23% Similarity=0.456 Sum_probs=23.9
Q ss_pred ccHHHHHHHh-CCCHHHHHHHHHHhhc
Q 003835 641 LSFQDIKDAT-GIEDKELRRTLQSLAC 666 (792)
Q Consensus 641 lt~~eI~~~T-~i~~~eL~r~L~sL~~ 666 (792)
++++||++.. |||..+++..+.-|+.
T Consensus 24 i~~~el~~~l~~~~~~~i~~aid~L~~ 50 (69)
T d1dpua_ 24 LNFQDLKNQLKHMSVSSIKQAVDFLSN 50 (69)
T ss_dssp EEHHHHHHHSTTSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHccCCCHHHHHHHHHHHHh
Confidence 8999999987 8999999999999983
No 44
>d1tf5a2 a.172.1.1 (A:571-780) Helical scaffold and wing domains of SecA {Bacillus subtilis [TaxId: 1423]}
Probab=23.27 E-value=2.4e+02 Score=24.89 Aligned_cols=131 Identities=17% Similarity=0.242 Sum_probs=72.9
Q ss_pred hHHHHHHHHHHHHHHHHhcCC------CCccHHHHHHHHHhhhcc-----------CchhHHHHHHHHHHHHHHHHHHHh
Q 003835 103 FEEDTWAKLKLAIKAIFLKQP------TSCDLEKLYQAVNDLCLH-----------KMGGNLYQRIEKECEEHISAAIRS 165 (792)
Q Consensus 103 ~~e~~W~~L~~AI~~I~~~~~------~~~s~e~LY~~Vy~lC~~-----------k~~e~LY~~l~~~~~~~l~~~~~~ 165 (792)
..+.....+++.++.+..... ....++.+-..+...+.. ...+.+...+.+.+..........
T Consensus 53 ~~~~i~~~~~~~i~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~k~~~ 132 (210)
T d1tf5a2 53 LREIVENMIKSSLERAIAAYTPREELPEEWKLDGLVDLINTTYLDEGALEKSDIFGKEPDEMLELIMDRIITKYNEKEEQ 132 (210)
T ss_dssp CHHHHHHHHHHHHHHHHHHTSCSSCCTTCSSCCCHHHHHHTTTSCTTSCSSSSCSSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhhhHHHHHHHHHhccccchhhhhHHHHHHHHHhhccchhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 334455667777777664422 222344455555444432 134556666666655555443332
Q ss_pred hhcCC---CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCcccHHH---HHHHHHHHHhccccchHHHHHH
Q 003835 166 LVGQS---PDLVVFLSLVERCWQDLCDQMLMIRGIALYLDRTYVKQTPNVRSLWD---MGLQLFRKYLSSYSEVEHKTVT 239 (792)
Q Consensus 166 l~~~~---~d~~~~L~~~~~~W~~~~~~l~~i~~iF~YLDR~Yv~~~~~~~sI~d---lgL~lFr~~v~~~~~l~~~l~~ 239 (792)
..... -....+|..+...|.+|-..|..|+.--.. |.|-. ..|+.+ =|..+|.+.+- .++..++.
T Consensus 133 ~~~~~~~~~er~i~L~~ID~~W~~HL~~Md~LR~~I~l--R~ygQ----kDPl~EYk~Eaf~lF~~m~~---~i~~~iv~ 203 (210)
T d1tf5a2 133 FGKEQMREFEKVIVLRAVDSKWMDHIDAMDQLRQGIHL--RAYAQ----TNPLREYQMEGFAMFEHMIE---SIEDEVAK 203 (210)
T ss_dssp SCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGG--TSCSS----SCHHHHHHHHHHHHHHHHHH---HHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH--HHHcC----CCHHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 21110 012468999999999999999999974322 33333 345554 47777776653 45555555
Q ss_pred HHH
Q 003835 240 GLL 242 (792)
Q Consensus 240 ~iL 242 (792)
.++
T Consensus 204 ~l~ 206 (210)
T d1tf5a2 204 FVM 206 (210)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 45
>d1dpua_ a.4.5.16 (A:) C-terminal domain of RPA32 {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.84 E-value=35 Score=25.68 Aligned_cols=32 Identities=19% Similarity=0.292 Sum_probs=23.7
Q ss_pred HHHHHHhcCCCCChHHHHHHHHHhhhhcccccC
Q 003835 749 ITELFQQLKFPIKPADLKKRIESLIDREYLERD 781 (792)
Q Consensus 749 i~ev~~~lrF~~~~~~iKk~IE~LIereYl~Rd 781 (792)
+.++.++|+ -.++.+|++.||.|++.++|=--
T Consensus 26 ~~el~~~l~-~~~~~~i~~aid~L~~eG~IYsT 57 (69)
T d1dpua_ 26 FQDLKNQLK-HMSVSSIKQAVDFLSNEGHIYST 57 (69)
T ss_dssp HHHHHHHST-TSCHHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHcc-CCCHHHHHHHHHHHHhCCceecc
Confidence 344555553 27788999999999999988643
No 46
>d1wxva1 d.15.1.1 (A:7-87) Bag-family molecular chaperone regulator-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.82 E-value=49 Score=25.25 Aligned_cols=34 Identities=21% Similarity=0.317 Sum_probs=25.9
Q ss_pred EEEEEEecCCeeEEEEeecc----ccHHHHH----HHhCCCH
Q 003835 621 CVLKAEFPKGKKELAVSLFQ----LSFQDIK----DATGIED 654 (792)
Q Consensus 621 ~~i~~~f~~~~~el~vs~~Q----lt~~eI~----~~T~i~~ 654 (792)
..|++.+++..|++.|+..| .|+++++ +.||+|.
T Consensus 2 i~i~V~~~~~~~~i~v~~~~~~~~~Tv~~LK~~I~~~tgvp~ 43 (81)
T d1wxva1 2 LTVTVTHSNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQ 43 (81)
T ss_dssp EEEEEECSSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCT
T ss_pred EEEEEEECCeeEEEEEecCCCCCccHHHHHHHHHHHHHCcCH
Confidence 45777888889999999888 6776654 4577764
No 47
>d1rp3a2 a.4.13.2 (A:164-234) Sigma factor sigma-28 (FliA) {Aquifex aeolicus [TaxId: 63363]}
Probab=22.79 E-value=28 Score=25.55 Aligned_cols=22 Identities=5% Similarity=0.052 Sum_probs=19.0
Q ss_pred ccHHHHHHHhCCCHHHHHHHHH
Q 003835 641 LSFQDIKDATGIEDKELRRTLQ 662 (792)
Q Consensus 641 lt~~eI~~~T~i~~~eL~r~L~ 662 (792)
+|++||++.+|++...++..+.
T Consensus 38 ~s~~eIA~~lgis~~tv~~~~~ 59 (71)
T d1rp3a2 38 LPAKEVAKILETSVSRVSQLKA 59 (71)
T ss_dssp CCHHHHHHHTTSCHHHHHHHHH
T ss_pred CCHHHHHHHHCCCHHHHHHHHH
Confidence 7999999999999988876653
No 48
>d1z6ra1 a.4.5.63 (A:12-81) Mlc protein N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=22.76 E-value=59 Score=24.00 Aligned_cols=45 Identities=16% Similarity=0.263 Sum_probs=39.3
Q ss_pred HHHHHhhhcccccChHHHHHHHHHhcCCCCChHHHHHHHHHhhhhcccccC
Q 003835 731 AAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERD 781 (792)
Q Consensus 731 AaIVRIMK~rK~l~h~~Li~ev~~~lrF~~~~~~iKk~IE~LIereYl~Rd 781 (792)
+.|.+....++.++-.+|... .-.+.+.|-+.++.|++.++|+..
T Consensus 8 ~~Il~~i~~~g~~sr~eLa~~------~gLS~~Tvs~iv~~L~~~glv~e~ 52 (70)
T d1z6ra1 8 GAVYRLIDQLGPVSRIDLSRL------AQLAPASITKIVHEMLEAHLVQEL 52 (70)
T ss_dssp HHHHHHHHSSCSCCHHHHHHH------TTCCHHHHHHHHHHHHHHTSEEEC
T ss_pred HHHHHHHHHcCCcCHHHHHHH------HCcCHHHHHHHHHHHHHCCCEEee
Confidence 468999999999999987775 578899999999999999999753
No 49
>d2ozua1 d.108.1.1 (A:507-776) Histone acetyltransferase MYST3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.51 E-value=25 Score=33.69 Aligned_cols=25 Identities=28% Similarity=0.496 Sum_probs=23.3
Q ss_pred ccHHHHHHHhCCCHHHHHHHHHHhh
Q 003835 641 LSFQDIKDATGIEDKELRRTLQSLA 665 (792)
Q Consensus 641 lt~~eI~~~T~i~~~eL~r~L~sL~ 665 (792)
+|+++|++.|||..+|+..+|+.|-
T Consensus 205 ~si~dis~~T~i~~~Dii~tL~~l~ 229 (270)
T d2ozua1 205 ISIKKLSKLTGICPQDITSTLHHLR 229 (270)
T ss_dssp -CHHHHHHHHCBCHHHHHHHHHHTT
T ss_pred eeHHHHHHHhCCCHHHHHHHHHHCC
Confidence 8999999999999999999999996
No 50
>d2bv6a1 a.4.5.28 (A:5-140) Transcriptional regulator MgrA {Staphylococcus aureus [TaxId: 1280]}
Probab=21.40 E-value=44 Score=27.79 Aligned_cols=56 Identities=5% Similarity=0.216 Sum_probs=36.1
Q ss_pred hhHHHHHhhhcccccChHHHHHHHHHhcCCCCChHHHHHHHHHhhhhccccc--CCCCC-Cceee
Q 003835 729 VDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLER--DKNNP-QIYNY 790 (792)
Q Consensus 729 i~AaIVRIMK~rK~l~h~~Li~ev~~~lrF~~~~~~iKk~IE~LIereYl~R--d~~d~-~~Y~Y 790 (792)
.+..|..+......++-.+|.. . ...+.+.+-+.|..|+++|||+| +++|+ ..+.+
T Consensus 35 ~q~~vL~~i~~~~~~t~~~la~----~--l~~~~~~~s~~l~~L~~~Gli~r~~~~~D~R~~~l~ 93 (136)
T d2bv6a1 35 PQFLVLTILWDESPVNVKKVVT----E--LALDTGTVSPLLKRMEQVDLIKRERSEVDQREVFIH 93 (136)
T ss_dssp HHHHHHHHHHHSSEEEHHHHHH----H--TTCCTTTHHHHHHHHHHTTSEEEEECSSSTTCEEEE
T ss_pred HHHHHHHHHHcCCCCCHHHHHH----H--HCCCHhHHHHHHHHHHHCCCEEEeecCCcccchhhc
Confidence 4455555666666676555433 3 34455668999999999999998 44454 33444
No 51
>d2giva1 d.108.1.1 (A:4-274) Probable histone acetyltransferase MYST1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.24 E-value=25 Score=33.61 Aligned_cols=25 Identities=40% Similarity=0.574 Sum_probs=23.1
Q ss_pred ccHHHHHHHhCCCHHHHHHHHHHhh
Q 003835 641 LSFQDIKDATGIEDKELRRTLQSLA 665 (792)
Q Consensus 641 lt~~eI~~~T~i~~~eL~r~L~sL~ 665 (792)
+|+++|++.|||..+|+..+|+.|-
T Consensus 204 isI~~is~~T~i~~~Dii~tL~~l~ 228 (271)
T d2giva1 204 LSIKDLSQMTSITQNDIISTLQSLN 228 (271)
T ss_dssp -CHHHHHHHHCBCHHHHHHHHHHTT
T ss_pred ccHHHHHHHhCCCHHHHHHHHHHCC
Confidence 8999999999999999999999985
No 52
>d1s3ja_ a.4.5.28 (A:) Putative transcriptional regulator YusO {Bacillus subtilis [TaxId: 1423]}
Probab=20.97 E-value=42 Score=28.12 Aligned_cols=30 Identities=13% Similarity=0.422 Sum_probs=24.6
Q ss_pred CCCChHHHHHHHHHhhhhccccc--CCCCCCc
Q 003835 758 FPIKPADLKKRIESLIDREYLER--DKNNPQI 787 (792)
Q Consensus 758 F~~~~~~iKk~IE~LIereYl~R--d~~d~~~ 787 (792)
...+++.+-+.|..|.++|||+| +++|+..
T Consensus 59 ~~i~~~~vs~~l~~L~~~glv~r~~~~~D~R~ 90 (143)
T d1s3ja_ 59 MEVKPSAVTLMADRLEQKNLIARTHNTKDRRV 90 (143)
T ss_dssp HTSCHHHHHHHHHHHHHTTSEEEEECSSCTTS
T ss_pred HCcCHHHHHHHHHHHHHhhhheeeeecCCCCc
Confidence 46688999999999999999998 5555543
No 53
>d2bbya_ a.4.5.15 (A:) DNA-binding domain from rap30 {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.38 E-value=60 Score=24.32 Aligned_cols=31 Identities=19% Similarity=0.200 Sum_probs=27.5
Q ss_pred ccHHHHHHHhCCCHHHHHHHHHHhhcCCceeeecCC
Q 003835 641 LSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLP 676 (792)
Q Consensus 641 lt~~eI~~~T~i~~~eL~r~L~sL~~~k~kiL~k~p 676 (792)
+|+.+|.+.|.=|+..|+.+|..+| ++.+.+
T Consensus 23 wsiK~L~~~t~QP~~yLKeiL~eIa-----~~~~~g 53 (69)
T d2bbya_ 23 YNLKDLVDITKQPVVYLKEILKEIG-----VQNVKG 53 (69)
T ss_dssp BCHHHHHHHCCSCHHHHHHHHHHHC-----CEECCT
T ss_pred CCHHHHHHHHhChHHHHHHHHHHHH-----HHHcCC
Confidence 8999999999999999999999998 565543
Done!