Query 003840
Match_columns 792
No_of_seqs 1205 out of 2981
Neff 8.1
Searched_HMMs 46136
Date Thu Mar 28 13:00:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003840.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003840hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0271 Notchless-like WD40 re 100.0 1.3E-45 2.8E-50 377.6 27.1 311 430-792 118-479 (480)
2 KOG0271 Notchless-like WD40 re 100.0 6.2E-43 1.4E-47 357.9 25.9 287 503-792 106-437 (480)
3 KOG0272 U4/U6 small nuclear ri 100.0 4.3E-41 9.3E-46 349.1 24.3 288 500-792 163-458 (459)
4 KOG0286 G-protein beta subunit 100.0 4.4E-39 9.5E-44 320.4 34.6 292 498-792 41-343 (343)
5 KOG0265 U5 snRNP-specific prot 100.0 9.3E-37 2E-41 305.0 28.7 286 504-790 39-334 (338)
6 KOG0272 U4/U6 small nuclear ri 100.0 1.5E-37 3.3E-42 322.7 23.2 272 429-751 177-458 (459)
7 KOG0318 WD40 repeat stress pro 100.0 5.4E-35 1.2E-39 310.5 38.6 296 493-792 171-600 (603)
8 KOG0279 G protein beta subunit 100.0 5.9E-35 1.3E-39 289.6 33.0 283 503-792 6-311 (315)
9 KOG0285 Pleiotropic regulator 100.0 5.6E-36 1.2E-40 304.6 26.2 288 499-792 138-437 (460)
10 KOG0266 WD40 repeat-containing 100.0 4.9E-34 1.1E-38 324.5 40.1 284 505-792 151-452 (456)
11 cd00200 WD40 WD40 domain, foun 100.0 1.1E-33 2.4E-38 295.8 38.1 282 506-792 3-289 (289)
12 KOG0315 G-protein beta subunit 100.0 1.7E-34 3.7E-39 281.7 29.4 265 526-792 12-286 (311)
13 KOG0295 WD40 repeat-containing 100.0 2.6E-35 5.6E-40 301.2 24.4 289 500-792 96-404 (406)
14 KOG0284 Polyadenylation factor 100.0 4.6E-36 9.9E-41 310.3 17.3 275 512-792 96-378 (464)
15 KOG0291 WD40-repeat-containing 100.0 3.4E-33 7.3E-38 307.1 39.0 286 502-792 297-610 (893)
16 KOG0315 G-protein beta subunit 100.0 3.3E-33 7.1E-38 272.8 29.9 279 486-773 17-309 (311)
17 KOG0273 Beta-transducin family 100.0 1.4E-33 3E-38 296.6 28.8 281 504-792 171-480 (524)
18 KOG0282 mRNA splicing factor [ 100.0 1E-34 2.3E-39 306.3 18.7 290 501-792 203-503 (503)
19 KOG0645 WD40 repeat protein [G 100.0 2.1E-32 4.5E-37 270.5 32.4 281 502-792 4-309 (312)
20 KOG0293 WD40 repeat-containing 100.0 6.4E-34 1.4E-38 294.2 22.5 287 499-792 211-511 (519)
21 KOG0273 Beta-transducin family 100.0 8.4E-33 1.8E-37 290.7 30.7 274 512-792 235-521 (524)
22 KOG0286 G-protein beta subunit 100.0 2.6E-32 5.7E-37 272.1 31.9 271 430-751 58-343 (343)
23 KOG0319 WD40-repeat-containing 100.0 1.4E-32 3E-37 302.5 31.8 347 439-792 250-617 (775)
24 KOG0279 G protein beta subunit 100.0 1.2E-32 2.5E-37 273.3 27.6 245 503-753 54-313 (315)
25 KOG0263 Transcription initiati 100.0 1.1E-32 2.4E-37 306.7 28.4 274 504-782 370-703 (707)
26 KOG0296 Angio-associated migra 100.0 8.1E-32 1.8E-36 275.8 32.4 282 504-792 98-396 (399)
27 KOG0319 WD40-repeat-containing 100.0 2.7E-32 5.9E-37 300.2 30.2 353 430-792 65-575 (775)
28 KOG0291 WD40-repeat-containing 100.0 4.5E-31 9.7E-36 290.5 39.5 358 429-792 98-506 (893)
29 PLN00181 protein SPA1-RELATED; 100.0 3.1E-31 6.6E-36 322.5 41.6 282 508-792 479-791 (793)
30 KOG0306 WD40-repeat-containing 100.0 1.7E-31 3.8E-36 293.5 33.9 347 436-791 31-577 (888)
31 KOG0263 Transcription initiati 100.0 4.8E-32 1E-36 301.7 27.0 264 430-710 381-651 (707)
32 KOG0284 Polyadenylation factor 100.0 1.7E-32 3.6E-37 284.0 16.1 275 429-753 98-380 (464)
33 KOG0281 Beta-TrCP (transducin 100.0 3.1E-32 6.7E-37 276.1 16.4 269 505-792 190-475 (499)
34 KOG0316 Conserved WD40 repeat- 100.0 1.1E-30 2.3E-35 253.2 26.3 280 502-791 7-296 (307)
35 KOG0306 WD40-repeat-containing 100.0 7.5E-31 1.6E-35 288.6 28.1 279 506-792 367-662 (888)
36 KOG0276 Vesicle coat complex C 100.0 9.5E-31 2.1E-35 282.4 26.7 280 506-790 7-295 (794)
37 KOG0295 WD40 repeat-containing 100.0 9.7E-31 2.1E-35 267.7 24.5 242 506-752 144-405 (406)
38 KOG1407 WD40 repeat protein [F 100.0 5.4E-30 1.2E-34 252.0 27.2 280 506-791 14-308 (313)
39 KOG0275 Conserved WD40 repeat- 100.0 2.5E-31 5.4E-36 267.1 16.7 277 510-792 211-507 (508)
40 KOG0278 Serine/threonine kinas 100.0 6.5E-31 1.4E-35 256.6 18.7 279 506-792 8-295 (334)
41 KOG0318 WD40 repeat stress pro 100.0 4E-29 8.6E-34 266.0 33.5 281 504-792 51-348 (603)
42 KOG0296 Angio-associated migra 100.0 1.6E-29 3.5E-34 259.0 27.7 283 504-792 56-354 (399)
43 KOG0266 WD40 repeat-containing 100.0 2.6E-29 5.7E-34 285.7 31.7 276 429-753 161-454 (456)
44 KOG0643 Translation initiation 100.0 5.9E-29 1.3E-33 245.4 28.5 279 507-791 5-314 (327)
45 cd00200 WD40 WD40 domain, foun 100.0 4.6E-28 9.9E-33 253.3 36.5 271 430-751 12-289 (289)
46 KOG0276 Vesicle coat complex C 100.0 7E-29 1.5E-33 268.1 30.1 240 507-749 50-295 (794)
47 KOG0288 WD40 repeat protein Ti 100.0 3.3E-30 7.2E-35 267.4 17.0 284 503-792 166-459 (459)
48 KOG0292 Vesicle coat complex C 100.0 4.7E-29 1E-33 277.7 27.2 280 508-791 5-318 (1202)
49 KOG0640 mRNA cleavage stimulat 100.0 3.8E-29 8.1E-34 250.7 23.4 285 504-792 104-424 (430)
50 KOG0772 Uncharacterized conser 100.0 5.4E-29 1.2E-33 264.0 25.9 292 499-791 154-484 (641)
51 KOG0285 Pleiotropic regulator 100.0 2.6E-29 5.6E-34 256.1 21.3 242 544-792 141-387 (460)
52 KOG1446 Histone H3 (Lys4) meth 100.0 1.4E-27 3.1E-32 241.8 33.5 283 502-791 4-300 (311)
53 KOG0293 WD40 repeat-containing 100.0 8.9E-29 1.9E-33 256.2 22.9 277 429-754 226-514 (519)
54 KOG0265 U5 snRNP-specific prot 100.0 9.5E-28 2.1E-32 240.6 28.8 271 430-751 50-336 (338)
55 KOG0281 Beta-TrCP (transducin 100.0 1.3E-29 2.8E-34 257.0 15.7 273 472-758 197-482 (499)
56 KOG0277 Peroxisomal targeting 100.0 1.5E-28 3.2E-33 241.1 22.4 276 515-792 11-307 (311)
57 KOG0268 Sof1-like rRNA process 100.0 2.2E-29 4.7E-34 257.4 15.8 280 502-792 56-343 (433)
58 KOG0292 Vesicle coat complex C 100.0 9.8E-28 2.1E-32 267.3 30.2 241 507-753 46-321 (1202)
59 KOG0316 Conserved WD40 repeat- 100.0 6.4E-28 1.4E-32 234.0 24.9 270 429-751 19-297 (307)
60 KOG0313 Microtubule binding pr 100.0 6.5E-28 1.4E-32 248.2 26.1 277 509-792 102-416 (423)
61 KOG0275 Conserved WD40 repeat- 100.0 7.7E-29 1.7E-33 249.2 16.8 276 432-751 218-507 (508)
62 PLN00181 protein SPA1-RELATED; 100.0 1.2E-26 2.6E-31 282.4 39.0 238 512-752 532-792 (793)
63 KOG0645 WD40 repeat protein [G 100.0 4.4E-27 9.5E-32 232.8 27.4 262 485-753 33-311 (312)
64 KOG0283 WD40 repeat-containing 100.0 1.2E-27 2.7E-32 268.7 25.9 242 506-753 260-576 (712)
65 KOG0282 mRNA splicing factor [ 100.0 8.4E-29 1.8E-33 261.8 15.4 246 544-792 204-460 (503)
66 KOG0310 Conserved WD40 repeat- 100.0 4.7E-27 1E-31 249.1 26.7 275 512-790 26-305 (487)
67 KOG0289 mRNA splicing factor [ 100.0 7.3E-27 1.6E-31 243.7 27.1 274 513-791 220-503 (506)
68 PTZ00420 coronin; Provisional 100.0 7.9E-26 1.7E-30 258.3 37.4 247 530-776 50-318 (568)
69 KOG0274 Cdc4 and related F-box 100.0 2.2E-26 4.8E-31 262.0 30.7 268 510-792 206-480 (537)
70 KOG0278 Serine/threonine kinas 100.0 1.1E-27 2.3E-32 234.2 16.6 249 504-758 51-302 (334)
71 PTZ00421 coronin; Provisional 100.0 1.4E-25 3.1E-30 254.9 36.0 263 512-776 20-315 (493)
72 KOG0973 Histone transcription 100.0 3E-26 6.4E-31 263.4 29.4 278 510-791 11-352 (942)
73 KOG0305 Anaphase promoting com 100.0 3.5E-26 7.6E-31 251.5 28.8 266 517-792 182-459 (484)
74 KOG0647 mRNA export protein (c 100.0 4.3E-26 9.3E-31 228.8 26.2 270 510-782 25-311 (347)
75 KOG0310 Conserved WD40 repeat- 99.9 1E-25 2.2E-30 239.0 26.0 274 429-754 28-310 (487)
76 KOG0300 WD40 repeat-containing 99.9 3.8E-26 8.2E-31 229.5 21.3 287 501-792 137-474 (481)
77 KOG1408 WD40 repeat protein [F 99.9 1.3E-25 2.9E-30 245.1 27.3 346 446-792 280-711 (1080)
78 KOG0283 WD40 repeat-containing 99.9 8.5E-26 1.8E-30 254.0 25.2 275 429-709 269-577 (712)
79 KOG0973 Histone transcription 99.9 1.7E-25 3.7E-30 257.2 27.8 299 419-756 6-358 (942)
80 KOG0277 Peroxisomal targeting 99.9 7.7E-26 1.7E-30 222.0 20.8 250 499-752 48-308 (311)
81 KOG1539 WD repeat protein [Gen 99.9 1.3E-24 2.9E-29 242.3 33.3 335 448-791 184-645 (910)
82 KOG0305 Anaphase promoting com 99.9 2.6E-25 5.7E-30 244.6 27.1 292 409-755 161-463 (484)
83 KOG0313 Microtubule binding pr 99.9 2.7E-25 5.8E-30 229.0 25.3 261 484-753 120-418 (423)
84 KOG0294 WD40 repeat-containing 99.9 4.3E-25 9.3E-30 222.8 26.1 265 499-773 30-306 (362)
85 KOG0308 Conserved WD40 repeat- 99.9 2.7E-26 5.9E-31 249.7 18.8 268 522-792 35-325 (735)
86 PTZ00421 coronin; Provisional 99.9 3.3E-24 7.1E-29 243.8 36.5 224 507-735 70-315 (493)
87 KOG1407 WD40 repeat protein [F 99.9 1.3E-25 2.8E-30 221.3 21.3 239 548-790 14-257 (313)
88 KOG2096 WD40 repeat protein [G 99.9 8.3E-25 1.8E-29 220.5 26.2 283 505-791 79-399 (420)
89 KOG0641 WD40 repeat protein [G 99.9 1.1E-23 2.3E-28 203.1 32.6 287 501-791 22-346 (350)
90 KOG0274 Cdc4 and related F-box 99.9 6.7E-25 1.5E-29 249.9 28.8 257 486-758 225-487 (537)
91 KOG1036 Mitotic spindle checkp 99.9 1.6E-24 3.5E-29 218.5 27.2 269 511-784 12-294 (323)
92 KOG0288 WD40 repeat protein Ti 99.9 1.6E-25 3.4E-30 232.8 19.6 258 484-750 192-458 (459)
93 KOG0299 U3 snoRNP-associated p 99.9 1.5E-24 3.3E-29 228.4 26.4 277 505-788 135-450 (479)
94 KOG0643 Translation initiation 99.9 3.6E-24 7.7E-29 211.7 27.1 248 504-754 44-318 (327)
95 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 3.4E-23 7.3E-28 221.6 36.3 262 524-792 1-277 (300)
96 KOG0294 WD40 repeat-containing 99.9 3.6E-24 7.8E-29 216.1 26.5 257 526-792 3-279 (362)
97 KOG1273 WD40 repeat protein [G 99.9 2.3E-24 4.9E-29 217.1 24.2 275 515-792 26-320 (405)
98 KOG0301 Phospholipase A2-activ 99.9 2.9E-24 6.2E-29 235.7 26.9 273 502-791 4-285 (745)
99 KOG0639 Transducin-like enhanc 99.9 1.2E-23 2.5E-28 222.6 28.7 276 509-791 416-701 (705)
100 KOG0640 mRNA cleavage stimulat 99.9 3.6E-24 7.9E-29 215.0 23.0 290 431-752 116-425 (430)
101 PTZ00420 coronin; Provisional 99.9 5E-23 1.1E-27 235.3 34.5 239 489-735 54-318 (568)
102 KOG0641 WD40 repeat protein [G 99.9 1.7E-22 3.6E-27 195.0 32.0 248 503-753 80-349 (350)
103 KOG1446 Histone H3 (Lys4) meth 99.9 6E-23 1.3E-27 208.3 30.4 245 544-792 4-260 (311)
104 KOG0647 mRNA export protein (c 99.9 2.4E-23 5.3E-28 209.1 26.8 229 506-743 66-313 (347)
105 KOG0299 U3 snoRNP-associated p 99.9 1.4E-23 3.1E-28 221.1 24.9 280 431-743 146-445 (479)
106 KOG1408 WD40 repeat protein [F 99.9 6.6E-24 1.4E-28 232.0 22.1 245 508-755 455-715 (1080)
107 KOG0264 Nucleosome remodeling 99.9 1.2E-23 2.6E-28 222.1 23.0 248 506-792 118-402 (422)
108 KOG0308 Conserved WD40 repeat- 99.9 3.7E-24 8E-29 233.2 19.3 305 484-792 42-391 (735)
109 KOG1539 WD repeat protein [Gen 99.9 3.5E-22 7.7E-27 223.1 35.0 357 429-792 76-604 (910)
110 KOG1332 Vesicle coat complex C 99.9 1.1E-23 2.3E-28 206.0 18.7 246 509-754 8-287 (299)
111 KOG2106 Uncharacterized conser 99.9 3.6E-22 7.7E-27 212.0 31.5 333 449-792 183-579 (626)
112 KOG2055 WD40 repeat protein [G 99.9 5.6E-23 1.2E-27 216.5 25.0 282 510-792 211-510 (514)
113 KOG0650 WD40 repeat nucleolar 99.9 3.9E-23 8.4E-28 223.1 23.8 288 499-791 387-732 (733)
114 KOG2445 Nuclear pore complex c 99.9 1.1E-22 2.5E-27 204.7 24.7 255 509-792 10-316 (361)
115 KOG0289 mRNA splicing factor [ 99.9 1.4E-22 3.1E-27 211.9 26.2 251 499-752 248-505 (506)
116 KOG0646 WD40 repeat protein [G 99.9 5.3E-23 1.2E-27 217.3 22.9 257 490-752 62-349 (476)
117 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 2.8E-21 6E-26 206.8 36.7 275 488-774 10-300 (300)
118 KOG2106 Uncharacterized conser 99.9 1E-21 2.2E-26 208.5 31.6 335 449-792 225-624 (626)
119 KOG0301 Phospholipase A2-activ 99.9 1.1E-22 2.3E-27 223.5 24.3 253 485-754 31-289 (745)
120 KOG0269 WD40 repeat-containing 99.9 5.1E-23 1.1E-27 228.2 20.4 273 514-789 41-335 (839)
121 KOG4283 Transcription-coupled 99.9 5.4E-22 1.2E-26 198.3 25.7 281 507-791 38-362 (397)
122 KOG1332 Vesicle coat complex C 99.9 4.6E-23 1E-27 201.5 17.5 241 551-792 8-284 (299)
123 KOG0639 Transducin-like enhanc 99.9 6.6E-23 1.4E-27 216.9 19.7 234 512-752 465-703 (705)
124 KOG0772 Uncharacterized conser 99.9 2.1E-22 4.5E-27 214.2 23.5 236 512-751 214-485 (641)
125 KOG0321 WD40 repeat-containing 99.9 1.2E-22 2.7E-27 220.9 21.1 274 517-792 54-389 (720)
126 KOG0268 Sof1-like rRNA process 99.9 3.6E-23 7.9E-28 212.0 16.0 261 484-756 84-348 (433)
127 KOG0267 Microtubule severing p 99.9 7E-24 1.5E-28 233.3 10.7 237 505-785 21-259 (825)
128 KOG1274 WD40 repeat protein [G 99.9 1.5E-21 3.3E-26 220.5 29.1 275 509-791 10-297 (933)
129 KOG1063 RNA polymerase II elon 99.9 7.2E-22 1.6E-26 216.8 25.3 282 507-792 262-646 (764)
130 KOG2048 WD40 repeat protein [G 99.9 2.6E-20 5.7E-25 204.6 34.0 351 430-792 28-503 (691)
131 KOG2048 WD40 repeat protein [G 99.9 2.4E-20 5.2E-25 204.9 32.1 278 505-790 18-315 (691)
132 KOG1274 WD40 repeat protein [G 99.9 5.6E-21 1.2E-25 215.9 27.1 239 551-792 10-260 (933)
133 KOG0300 WD40 repeat-containing 99.9 1.5E-21 3.2E-26 196.6 19.7 243 545-792 139-426 (481)
134 KOG0646 WD40 repeat protein [G 99.9 5.7E-21 1.2E-25 202.0 24.2 252 534-792 18-305 (476)
135 KOG1063 RNA polymerase II elon 99.9 1.5E-20 3.2E-25 206.6 27.2 360 430-792 270-761 (764)
136 KOG0264 Nucleosome remodeling 99.9 3.4E-21 7.4E-26 203.6 21.2 216 501-754 166-405 (422)
137 KOG4328 WD40 protein [Function 99.9 1.1E-20 2.4E-25 199.2 24.2 292 499-791 173-492 (498)
138 KOG1036 Mitotic spindle checkp 99.9 3.3E-20 7.2E-25 187.5 26.5 224 510-743 52-294 (323)
139 KOG0302 Ribosome Assembly prot 99.9 1.4E-20 3.1E-25 194.0 22.9 246 508-791 147-435 (440)
140 KOG1034 Transcriptional repres 99.9 1.9E-20 4.1E-25 190.2 22.9 289 500-792 25-381 (385)
141 KOG0307 Vesicle coat complex C 99.9 1.9E-21 4.2E-26 224.8 17.0 242 512-756 64-330 (1049)
142 KOG4378 Nuclear protein COP1 [ 99.9 1.1E-20 2.5E-25 200.0 21.3 279 491-776 14-305 (673)
143 KOG0270 WD40 repeat-containing 99.9 1.8E-20 3.9E-25 197.2 21.3 242 515-758 176-454 (463)
144 KOG0269 WD40 repeat-containing 99.9 3.4E-21 7.3E-26 213.9 16.1 236 515-754 90-341 (839)
145 COG2319 FOG: WD40 repeat [Gene 99.9 1.2E-17 2.7E-22 183.3 44.1 347 431-792 69-440 (466)
146 KOG2055 WD40 repeat protein [G 99.9 5.4E-20 1.2E-24 194.1 23.4 247 504-753 249-512 (514)
147 KOG0307 Vesicle coat complex C 99.9 1.7E-21 3.7E-26 225.2 13.3 273 516-791 10-324 (1049)
148 KOG4227 WD40 repeat protein [G 99.9 5E-20 1.1E-24 190.0 21.3 313 475-792 19-385 (609)
149 KOG4283 Transcription-coupled 99.9 7E-20 1.5E-24 183.3 21.3 206 551-756 40-279 (397)
150 KOG1538 Uncharacterized conser 99.8 7.2E-20 1.6E-24 199.2 22.9 269 514-792 14-291 (1081)
151 KOG2919 Guanine nucleotide-bin 99.8 2E-19 4.4E-24 182.3 23.4 265 515-784 52-360 (406)
152 KOG0321 WD40 repeat-containing 99.8 1.2E-19 2.6E-24 197.8 23.4 247 506-755 94-393 (720)
153 KOG0267 Microtubule severing p 99.8 3.6E-21 7.8E-26 212.1 11.2 210 489-703 50-262 (825)
154 KOG2096 WD40 repeat protein [G 99.8 3.2E-19 6.8E-24 180.4 23.2 241 548-791 80-357 (420)
155 KOG4328 WD40 protein [Function 99.8 9.4E-20 2E-24 192.2 20.1 254 539-792 171-448 (498)
156 COG2319 FOG: WD40 repeat [Gene 99.8 1.9E-17 4.2E-22 181.7 39.3 282 507-792 60-357 (466)
157 KOG4378 Nuclear protein COP1 [ 99.8 3.6E-19 7.7E-24 188.7 22.0 279 449-735 15-305 (673)
158 KOG0322 G-protein beta subunit 99.8 8.9E-20 1.9E-24 180.4 14.7 283 504-792 6-321 (323)
159 KOG1445 Tumor-specific antigen 99.8 2.3E-18 5E-23 186.7 26.1 134 658-792 602-748 (1012)
160 KOG1273 WD40 repeat protein [G 99.8 1.8E-18 3.9E-23 174.8 23.5 273 430-754 26-323 (405)
161 KOG0650 WD40 repeat nucleolar 99.8 6.1E-19 1.3E-23 190.9 21.4 241 546-791 392-677 (733)
162 KOG0644 Uncharacterized conser 99.8 5E-20 1.1E-24 205.2 8.9 274 502-791 180-465 (1113)
163 KOG1009 Chromatin assembly com 99.8 4.4E-18 9.6E-23 177.5 22.7 270 500-790 53-368 (434)
164 KOG0642 Cell-cycle nuclear pro 99.8 3.8E-19 8.3E-24 192.1 14.9 256 503-763 285-572 (577)
165 KOG1334 WD40 repeat protein [G 99.8 3E-19 6.4E-24 189.7 13.6 291 501-791 131-463 (559)
166 PRK11028 6-phosphogluconolacto 99.8 9.6E-17 2.1E-21 175.8 33.9 262 488-753 11-304 (330)
167 PRK11028 6-phosphogluconolacto 99.8 7.9E-17 1.7E-21 176.4 32.7 262 528-792 6-302 (330)
168 KOG0302 Ribosome Assembly prot 99.8 2.1E-18 4.5E-23 178.2 18.7 205 551-792 148-376 (440)
169 KOG0270 WD40 repeat-containing 99.8 7.6E-18 1.6E-22 177.5 22.8 234 557-792 176-447 (463)
170 KOG1188 WD40 repeat protein [G 99.8 2.2E-18 4.7E-23 176.4 18.1 267 525-792 41-344 (376)
171 KOG1007 WD repeat protein TSSC 99.8 9.1E-18 2E-22 168.0 21.3 274 475-790 26-357 (370)
172 KOG1517 Guanine nucleotide bin 99.8 6.1E-17 1.3E-21 184.8 27.8 280 510-792 1062-1379(1387)
173 KOG0303 Actin-binding protein 99.8 7.8E-17 1.7E-21 167.4 23.7 226 549-775 76-320 (472)
174 KOG0290 Conserved WD40 repeat- 99.8 6.6E-17 1.4E-21 162.1 20.0 238 509-750 93-362 (364)
175 KOG2919 Guanine nucleotide-bin 99.8 1.8E-16 4E-21 161.0 23.3 229 513-744 105-361 (406)
176 KOG1240 Protein kinase contain 99.7 3.5E-16 7.6E-21 181.4 28.5 292 501-792 1037-1431(1431)
177 KOG2445 Nuclear pore complex c 99.7 3.7E-16 8E-21 158.0 24.9 255 484-773 30-341 (361)
178 KOG1034 Transcriptional repres 99.7 6.1E-17 1.3E-21 164.9 19.2 240 510-753 87-383 (385)
179 KOG1587 Cytoplasmic dynein int 99.7 4.3E-16 9.3E-21 176.7 28.2 257 534-792 222-514 (555)
180 KOG1538 Uncharacterized conser 99.7 1.6E-16 3.4E-21 173.5 22.2 268 429-754 14-294 (1081)
181 KOG0642 Cell-cycle nuclear pro 99.7 2E-17 4.2E-22 179.0 15.2 245 546-792 286-559 (577)
182 KOG0303 Actin-binding protein 99.7 1E-16 2.2E-21 166.6 19.8 200 506-710 75-296 (472)
183 KOG2110 Uncharacterized conser 99.7 3.4E-15 7.3E-20 154.7 30.0 231 512-754 5-249 (391)
184 KOG1524 WD40 repeat-containing 99.7 1.2E-16 2.7E-21 171.0 19.5 259 510-790 12-282 (737)
185 KOG1007 WD repeat protein TSSC 99.7 5.5E-16 1.2E-20 155.4 21.6 214 501-754 111-362 (370)
186 KOG1963 WD40 repeat protein [G 99.7 1.7E-15 3.7E-20 171.8 28.3 279 510-792 203-536 (792)
187 KOG0649 WD40 repeat protein [G 99.7 1.2E-15 2.6E-20 149.6 22.1 227 556-791 12-271 (325)
188 KOG1188 WD40 repeat protein [G 99.7 4.5E-16 9.7E-21 159.5 19.9 247 506-753 64-346 (376)
189 KOG1587 Cytoplasmic dynein int 99.7 8.3E-16 1.8E-20 174.4 23.8 261 491-755 224-518 (555)
190 KOG0649 WD40 repeat protein [G 99.7 5E-15 1.1E-19 145.3 25.8 266 514-791 12-313 (325)
191 KOG2139 WD40 repeat protein [G 99.7 3.8E-15 8.2E-20 153.5 25.7 276 512-791 98-428 (445)
192 PRK01742 tolB translocation pr 99.7 2.2E-15 4.8E-20 170.9 25.1 230 533-775 183-426 (429)
193 KOG4227 WD40 repeat protein [G 99.7 3.7E-15 8.1E-20 154.2 23.1 282 429-752 58-386 (609)
194 KOG1523 Actin-related protein 99.7 4.2E-15 9.1E-20 151.3 23.1 225 507-734 5-260 (361)
195 KOG0290 Conserved WD40 repeat- 99.7 5.7E-15 1.2E-19 148.3 23.2 273 513-790 45-361 (364)
196 KOG2110 Uncharacterized conser 99.7 2E-14 4.3E-19 149.0 26.4 230 554-792 5-246 (391)
197 PF02239 Cytochrom_D1: Cytochr 99.7 1.1E-13 2.4E-18 152.7 34.3 264 526-792 7-345 (369)
198 PRK01742 tolB translocation pr 99.7 3.6E-15 7.7E-20 169.2 23.0 225 505-734 196-426 (429)
199 KOG1272 WD40-repeat-containing 99.7 1.7E-16 3.6E-21 168.0 10.9 263 512-786 129-401 (545)
200 KOG1310 WD40 repeat protein [G 99.7 6.5E-16 1.4E-20 166.0 15.4 207 504-710 42-305 (758)
201 KOG4497 Uncharacterized conser 99.7 5E-14 1.1E-18 143.6 26.8 269 513-787 49-425 (447)
202 KOG2394 WD40 protein DMR-N9 [G 99.7 3E-14 6.6E-19 153.4 25.6 242 514-773 125-383 (636)
203 PRK03629 tolB translocation pr 99.7 7.4E-14 1.6E-18 158.2 30.1 232 534-774 179-427 (429)
204 KOG1963 WD40 repeat protein [G 99.6 8.5E-14 1.8E-18 158.3 28.7 280 508-791 12-319 (792)
205 KOG2315 Predicted translation 99.6 1.8E-13 3.9E-18 148.7 29.4 268 514-792 75-388 (566)
206 KOG2111 Uncharacterized conser 99.6 9.1E-13 2E-17 134.5 31.9 229 514-754 7-257 (346)
207 KOG2321 WD40 repeat protein [G 99.6 8.1E-14 1.8E-18 151.1 24.4 275 510-791 49-340 (703)
208 PRK05137 tolB translocation pr 99.6 2.4E-13 5.2E-18 154.6 29.9 232 534-775 182-433 (435)
209 KOG0771 Prolactin regulatory e 99.6 7.9E-15 1.7E-19 154.6 16.1 191 516-708 148-354 (398)
210 KOG4497 Uncharacterized conser 99.6 6.3E-14 1.4E-18 142.8 20.9 271 517-791 13-388 (447)
211 PRK04922 tolB translocation pr 99.6 1.9E-13 4.2E-18 155.3 27.4 232 534-774 184-432 (433)
212 KOG1445 Tumor-specific antigen 99.6 1.7E-14 3.7E-19 157.0 17.2 238 520-758 587-849 (1012)
213 KOG0644 Uncharacterized conser 99.6 2.7E-15 5.8E-20 167.9 11.0 241 504-757 224-472 (1113)
214 KOG1009 Chromatin assembly com 99.6 1.2E-13 2.6E-18 144.7 22.4 237 500-757 111-376 (434)
215 PF10282 Lactonase: Lactonase, 99.6 9.6E-12 2.1E-16 137.1 38.9 271 501-772 26-345 (345)
216 PRK03629 tolB translocation pr 99.6 1.2E-12 2.6E-17 148.4 31.5 203 577-787 180-396 (429)
217 PF02239 Cytochrom_D1: Cytochr 99.6 7.9E-13 1.7E-17 146.0 29.0 242 515-760 80-354 (369)
218 KOG1524 WD40 repeat-containing 99.6 1.9E-14 4.1E-19 154.5 15.4 204 525-749 76-282 (737)
219 KOG1523 Actin-related protein 99.6 2.1E-13 4.5E-18 139.1 22.0 226 550-776 6-261 (361)
220 KOG2394 WD40 protein DMR-N9 [G 99.6 1.6E-13 3.5E-18 147.8 22.3 167 522-689 183-384 (636)
221 KOG3881 Uncharacterized conser 99.6 1.4E-13 3E-18 143.7 21.1 260 510-775 53-342 (412)
222 KOG0771 Prolactin regulatory e 99.6 1.6E-13 3.5E-18 144.7 21.7 190 602-791 98-351 (398)
223 KOG1517 Guanine nucleotide bin 99.6 3E-13 6.6E-18 155.1 24.2 252 533-792 1049-1331(1387)
224 PRK02889 tolB translocation pr 99.6 8.8E-13 1.9E-17 149.5 28.3 233 534-775 176-425 (427)
225 PF10282 Lactonase: Lactonase, 99.6 3.1E-11 6.7E-16 133.0 38.0 266 527-792 2-320 (345)
226 COG5354 Uncharacterized protei 99.6 2.6E-12 5.7E-17 138.2 27.9 271 513-792 72-393 (561)
227 KOG1354 Serine/threonine prote 99.5 4.1E-13 8.8E-18 137.9 20.5 275 512-791 25-431 (433)
228 PRK02889 tolB translocation pr 99.5 8.7E-13 1.9E-17 149.6 25.0 222 506-734 189-425 (427)
229 PRK04922 tolB translocation pr 99.5 2.6E-12 5.6E-17 146.1 26.8 221 504-733 195-432 (433)
230 KOG1240 Protein kinase contain 99.5 1E-12 2.2E-17 153.2 23.5 249 539-792 1034-1332(1431)
231 KOG2111 Uncharacterized conser 99.5 5.1E-12 1.1E-16 129.1 25.1 229 556-791 7-253 (346)
232 KOG1310 WD40 repeat protein [G 99.5 1.2E-13 2.7E-18 148.7 13.7 214 545-758 41-308 (758)
233 KOG2314 Translation initiation 99.5 8.2E-12 1.8E-16 135.2 27.3 267 514-786 251-559 (698)
234 KOG2321 WD40 repeat protein [G 99.5 1.5E-12 3.3E-17 141.3 21.6 238 552-792 49-300 (703)
235 TIGR02800 propeller_TolB tol-p 99.5 8.2E-12 1.8E-16 141.3 28.9 231 533-772 169-416 (417)
236 KOG1409 Uncharacterized conser 99.5 9.8E-13 2.1E-17 135.2 18.8 250 500-754 12-271 (404)
237 KOG3881 Uncharacterized conser 99.5 2E-12 4.3E-17 135.2 20.8 235 553-792 54-318 (412)
238 PRK00178 tolB translocation pr 99.5 1.7E-11 3.6E-16 139.5 29.8 232 535-775 180-428 (430)
239 PRK05137 tolB translocation pr 99.5 1.2E-11 2.5E-16 140.8 28.2 201 577-785 183-397 (435)
240 KOG1334 WD40 repeat protein [G 99.5 4.8E-13 1E-17 142.9 14.0 278 431-756 146-469 (559)
241 PRK04792 tolB translocation pr 99.5 2.2E-11 4.9E-16 138.7 28.5 231 535-774 199-446 (448)
242 KOG1272 WD40-repeat-containing 99.4 1.9E-13 4.1E-18 145.1 9.1 228 554-792 129-360 (545)
243 TIGR02658 TTQ_MADH_Hv methylam 99.4 1.9E-10 4.1E-15 124.7 32.4 256 534-792 27-328 (352)
244 KOG0322 G-protein beta subunit 99.4 2.4E-12 5.1E-17 128.2 15.7 213 490-707 36-322 (323)
245 KOG2139 WD40 repeat protein [G 99.4 1.3E-11 2.9E-16 127.7 21.5 227 507-752 191-430 (445)
246 COG2706 3-carboxymuconate cycl 99.4 6.3E-10 1.4E-14 116.4 33.1 265 509-773 36-345 (346)
247 KOG0974 WD-repeat protein WDR6 99.4 5.7E-12 1.2E-16 145.7 19.5 265 512-792 7-286 (967)
248 PF08662 eIF2A: Eukaryotic tra 99.4 1.4E-11 3.1E-16 124.0 20.1 108 678-792 58-177 (194)
249 KOG2315 Predicted translation 99.4 1.4E-10 3.1E-15 126.5 28.7 328 431-774 38-410 (566)
250 PRK01029 tolB translocation pr 99.4 1.5E-10 3.2E-15 131.0 29.7 236 534-776 165-426 (428)
251 TIGR02800 propeller_TolB tol-p 99.4 8.3E-11 1.8E-15 133.0 27.6 202 577-786 171-386 (417)
252 PRK04792 tolB translocation pr 99.4 9.4E-11 2E-15 133.6 25.7 219 506-733 211-446 (448)
253 PRK00178 tolB translocation pr 99.4 1.3E-10 2.8E-15 132.2 26.3 220 505-733 191-427 (430)
254 PF08662 eIF2A: Eukaryotic tra 99.4 4.7E-11 1E-15 120.3 19.3 148 558-708 9-179 (194)
255 PRK01029 tolB translocation pr 99.3 3E-10 6.5E-15 128.5 26.9 212 577-792 166-401 (428)
256 KOG4547 WD40 repeat-containing 99.3 2.4E-10 5.2E-15 125.7 23.5 184 522-709 3-221 (541)
257 KOG2041 WD40 repeat protein [G 99.3 1.8E-10 3.9E-15 127.7 22.5 274 511-790 13-333 (1189)
258 TIGR02658 TTQ_MADH_Hv methylam 99.3 8.2E-09 1.8E-13 112.1 34.7 247 502-760 37-337 (352)
259 COG5354 Uncharacterized protei 99.3 6.5E-10 1.4E-14 120.0 24.4 272 508-792 28-346 (561)
260 TIGR03300 assembly_YfgL outer 99.3 2.5E-09 5.4E-14 119.5 29.0 253 523-792 104-377 (377)
261 KOG0309 Conserved WD40 repeat- 99.3 3.5E-11 7.6E-16 133.8 12.7 278 512-792 24-337 (1081)
262 KOG0280 Uncharacterized conser 99.3 3.5E-10 7.5E-15 114.6 18.7 241 511-791 68-330 (339)
263 KOG4190 Uncharacterized conser 99.3 3.9E-11 8.4E-16 129.3 12.5 278 504-791 727-1033(1034)
264 TIGR03300 assembly_YfgL outer 99.2 7.8E-09 1.7E-13 115.5 31.2 255 523-792 64-336 (377)
265 COG2706 3-carboxymuconate cycl 99.2 2.3E-08 4.9E-13 104.9 31.7 259 533-791 15-318 (346)
266 KOG4547 WD40 repeat-containing 99.2 3.2E-10 7E-15 124.7 18.3 205 564-791 3-217 (541)
267 PF04762 IKI3: IKI3 family; I 99.2 2.4E-08 5.2E-13 122.0 34.5 279 510-792 73-454 (928)
268 KOG0280 Uncharacterized conser 99.2 1.2E-09 2.7E-14 110.7 18.9 196 514-709 123-334 (339)
269 COG4946 Uncharacterized protei 99.2 1.2E-08 2.6E-13 109.2 26.9 145 510-657 357-508 (668)
270 COG4946 Uncharacterized protei 99.2 2.3E-08 5E-13 107.0 29.0 281 490-783 205-507 (668)
271 PLN02919 haloacid dehalogenase 99.2 2.7E-08 5.9E-13 123.7 32.7 232 558-792 571-886 (1057)
272 KOG0974 WD-repeat protein WDR6 99.2 1.7E-09 3.7E-14 125.6 20.3 194 512-710 87-290 (967)
273 PLN02919 haloacid dehalogenase 99.1 3.9E-08 8.5E-13 122.3 33.7 239 516-757 571-892 (1057)
274 KOG1354 Serine/threonine prote 99.1 1.9E-09 4.2E-14 111.2 17.8 238 553-792 24-357 (433)
275 COG5170 CDC55 Serine/threonine 99.1 6.4E-10 1.4E-14 113.1 13.8 237 512-752 26-366 (460)
276 KOG2314 Translation initiation 99.1 1.8E-08 3.9E-13 109.8 25.4 269 515-792 213-523 (698)
277 PRK04043 tolB translocation pr 99.1 6E-08 1.3E-12 109.3 30.1 226 534-771 169-418 (419)
278 PRK04043 tolB translocation pr 99.1 2.4E-08 5.3E-13 112.5 26.9 191 514-709 189-401 (419)
279 KOG1912 WD40 repeat protein [G 99.1 3.8E-08 8.1E-13 110.8 26.9 208 500-708 43-304 (1062)
280 KOG1064 RAVE (regulator of V-A 99.1 7.5E-10 1.6E-14 133.5 12.7 224 507-787 2203-2439(2439)
281 KOG1064 RAVE (regulator of V-A 99.1 8.8E-10 1.9E-14 132.9 13.2 208 566-792 2180-2396(2439)
282 KOG4532 WD40-like repeat conta 99.0 3.4E-08 7.5E-13 99.1 20.9 246 533-785 51-323 (344)
283 PF04762 IKI3: IKI3 family; I 99.0 4.6E-07 1E-11 110.9 35.3 254 511-785 208-507 (928)
284 KOG1832 HIV-1 Vpr-binding prot 99.0 2.3E-10 5E-15 129.3 6.2 262 501-782 1090-1377(1516)
285 KOG1409 Uncharacterized conser 99.0 1.5E-08 3.3E-13 104.8 15.7 244 544-792 14-268 (404)
286 KOG1912 WD40 repeat protein [G 98.9 6.4E-08 1.4E-12 109.0 20.8 236 514-791 17-301 (1062)
287 PF08450 SGL: SMP-30/Gluconola 98.9 3.2E-06 6.9E-11 88.6 32.8 215 516-742 3-244 (246)
288 PF13360 PQQ_2: PQQ-like domai 98.9 4.7E-07 1E-11 93.9 26.2 213 533-758 2-235 (238)
289 PF08450 SGL: SMP-30/Gluconola 98.9 3.1E-06 6.6E-11 88.7 31.5 215 558-782 3-243 (246)
290 PRK11138 outer membrane biogen 98.9 5.7E-07 1.2E-11 101.1 27.6 252 524-792 120-392 (394)
291 KOG2041 WD40 repeat protein [G 98.9 1.9E-08 4.1E-13 112.0 14.9 230 553-785 13-279 (1189)
292 KOG0309 Conserved WD40 repeat- 98.9 4.3E-09 9.3E-14 117.5 9.9 217 493-709 95-340 (1081)
293 PF07433 DUF1513: Protein of u 98.9 1.5E-06 3.3E-11 91.4 28.2 244 515-784 7-276 (305)
294 COG5170 CDC55 Serine/threonine 98.9 1.1E-08 2.4E-13 104.2 11.6 234 553-792 25-307 (460)
295 KOG0882 Cyclophilin-related pe 98.9 1.8E-08 4E-13 107.3 12.6 291 486-791 27-369 (558)
296 KOG4532 WD40-like repeat conta 98.8 3.3E-07 7.2E-12 92.1 19.7 197 575-777 51-263 (344)
297 PRK11138 outer membrane biogen 98.8 7.5E-07 1.6E-11 100.2 25.3 255 524-792 69-351 (394)
298 KOG4190 Uncharacterized conser 98.8 1.8E-08 3.9E-13 109.1 10.1 203 547-756 728-951 (1034)
299 KOG1645 RING-finger-containing 98.8 4.1E-07 8.8E-12 96.2 19.9 248 536-792 175-459 (463)
300 KOG3914 WD repeat protein WDR4 98.8 4.5E-08 9.7E-13 103.6 11.1 118 517-637 112-232 (390)
301 PF15492 Nbas_N: Neuroblastoma 98.7 6.2E-06 1.3E-10 84.5 25.7 226 517-758 2-264 (282)
302 PF13360 PQQ_2: PQQ-like domai 98.7 2.8E-06 6.1E-11 88.0 23.1 208 575-792 2-228 (238)
303 KOG1645 RING-finger-containing 98.7 5.4E-07 1.2E-11 95.3 17.3 247 499-753 180-461 (463)
304 KOG1832 HIV-1 Vpr-binding prot 98.7 1.1E-08 2.5E-13 116.0 3.7 201 543-758 1090-1296(1516)
305 KOG4649 PQQ (pyrrolo-quinoline 98.7 2.7E-05 5.8E-10 78.5 26.6 255 523-792 62-349 (354)
306 KOG1920 IkappaB kinase complex 98.6 5.8E-06 1.3E-10 98.3 24.8 240 512-758 68-327 (1265)
307 KOG1275 PAB-dependent poly(A) 98.6 1.2E-06 2.6E-11 100.9 18.4 270 504-792 46-340 (1118)
308 PF04053 Coatomer_WDAD: Coatom 98.6 7.6E-06 1.6E-10 92.3 24.7 222 552-791 30-259 (443)
309 PF00930 DPPIV_N: Dipeptidyl p 98.6 1.6E-05 3.5E-10 88.0 27.1 256 521-783 1-346 (353)
310 KOG3914 WD repeat protein WDR4 98.6 9.1E-07 2E-11 93.8 16.1 157 515-676 65-232 (390)
311 KOG4714 Nucleoporin [Nuclear s 98.6 5.7E-07 1.2E-11 90.2 13.2 109 680-792 180-316 (319)
312 PF14583 Pectate_lyase22: Olig 98.6 4.6E-05 9.9E-10 82.8 28.8 267 518-791 41-378 (386)
313 KOG4714 Nucleoporin [Nuclear s 98.6 7.6E-07 1.6E-11 89.3 13.6 164 504-668 81-255 (319)
314 PRK02888 nitrous-oxide reducta 98.6 9.5E-06 2.1E-10 92.7 24.0 255 522-783 139-450 (635)
315 KOG2695 WD40 repeat protein [G 98.6 1.5E-07 3.2E-12 97.7 8.6 157 517-677 216-386 (425)
316 KOG0882 Cyclophilin-related pe 98.6 5.7E-07 1.2E-11 96.2 13.2 205 552-758 7-236 (558)
317 cd00216 PQQ_DH Dehydrogenases 98.6 2.6E-05 5.7E-10 90.1 27.9 256 524-792 61-422 (488)
318 KOG3621 WD40 repeat-containing 98.6 9.6E-06 2.1E-10 91.7 22.7 273 512-790 33-349 (726)
319 PF15492 Nbas_N: Neuroblastoma 98.5 2E-05 4.4E-10 80.8 22.3 187 515-710 46-261 (282)
320 PF02897 Peptidase_S9_N: Proly 98.5 0.00022 4.9E-09 80.7 32.0 241 515-760 126-411 (414)
321 KOG2066 Vacuolar assembly/sort 98.5 5.1E-06 1.1E-10 95.0 17.5 181 512-709 39-234 (846)
322 PF06433 Me-amine-dh_H: Methyl 98.5 0.00028 6.1E-09 75.4 29.5 255 534-792 17-318 (342)
323 KOG1275 PAB-dependent poly(A) 98.4 7E-06 1.5E-10 94.7 18.4 182 565-751 146-340 (1118)
324 COG0823 TolB Periplasmic compo 98.4 2.2E-05 4.8E-10 88.3 22.2 190 587-781 182-386 (425)
325 KOG2114 Vacuolar assembly/sort 98.4 3.5E-05 7.5E-10 88.9 23.7 203 561-768 30-260 (933)
326 PF00930 DPPIV_N: Dipeptidyl p 98.4 0.00015 3.2E-09 80.4 28.6 227 512-743 42-347 (353)
327 KOG1008 Uncharacterized conser 98.4 2.1E-07 4.5E-12 103.4 4.4 197 512-709 56-276 (783)
328 KOG2114 Vacuolar assembly/sort 98.4 8.8E-05 1.9E-09 85.7 25.3 189 519-709 30-244 (933)
329 PF07433 DUF1513: Protein of u 98.4 8.4E-05 1.8E-09 78.5 23.4 191 599-792 6-245 (305)
330 PF11768 DUF3312: Protein of u 98.4 0.00042 9.1E-09 77.8 29.2 90 701-792 237-327 (545)
331 COG3391 Uncharacterized conser 98.4 0.00063 1.4E-08 76.1 31.2 252 536-790 13-279 (381)
332 KOG2695 WD40 repeat protein [G 98.3 1.3E-06 2.8E-11 90.8 8.6 159 614-773 228-401 (425)
333 PF00400 WD40: WD domain, G-be 98.3 1.6E-06 3.6E-11 62.7 6.8 38 503-540 2-39 (39)
334 PRK02888 nitrous-oxide reducta 98.3 0.00015 3.2E-09 83.2 25.0 181 606-792 201-402 (635)
335 KOG3617 WD40 and TPR repeat-co 98.3 1.2E-05 2.7E-10 91.6 15.5 259 515-781 62-372 (1416)
336 KOG3617 WD40 and TPR repeat-co 98.3 1.6E-05 3.6E-10 90.7 16.2 109 516-628 19-131 (1416)
337 KOG1920 IkappaB kinase complex 98.3 0.00012 2.5E-09 87.6 23.7 227 553-791 67-319 (1265)
338 COG0823 TolB Periplasmic compo 98.3 9.7E-05 2.1E-09 83.1 22.2 202 536-745 175-391 (425)
339 PF04053 Coatomer_WDAD: Coatom 98.3 0.00027 5.8E-09 79.9 25.7 220 507-753 27-262 (443)
340 cd00216 PQQ_DH Dehydrogenases 98.3 0.00041 9E-09 80.2 28.0 225 525-759 111-430 (488)
341 PF06433 Me-amine-dh_H: Methyl 98.2 0.0014 3.1E-08 70.1 28.9 237 516-761 39-328 (342)
342 PF06977 SdiA-regulated: SdiA- 98.2 0.00075 1.6E-08 70.3 26.0 198 505-705 14-247 (248)
343 PF00400 WD40: WD domain, G-be 98.2 2.7E-06 5.9E-11 61.6 5.5 39 544-582 1-39 (39)
344 KOG2066 Vacuolar assembly/sort 98.2 6.4E-05 1.4E-09 86.2 19.0 180 555-754 40-234 (846)
345 KOG4649 PQQ (pyrrolo-quinoline 98.2 0.0012 2.7E-08 66.8 25.7 140 525-669 24-167 (354)
346 PF08596 Lgl_C: Lethal giant l 98.2 0.00035 7.5E-09 78.0 24.0 259 514-785 3-327 (395)
347 COG3391 Uncharacterized conser 98.2 0.00056 1.2E-08 76.5 25.8 220 513-735 74-310 (381)
348 PF06977 SdiA-regulated: SdiA- 98.1 0.0007 1.5E-08 70.5 23.6 197 592-791 16-247 (248)
349 PF00780 CNH: CNH domain; Int 98.1 0.0034 7.3E-08 66.7 27.9 223 521-759 4-261 (275)
350 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.1 0.0036 7.8E-08 72.9 29.9 184 524-712 69-337 (527)
351 PF00780 CNH: CNH domain; Int 98.0 0.0019 4.2E-08 68.6 24.7 215 564-792 5-253 (275)
352 PF08596 Lgl_C: Lethal giant l 98.0 0.0022 4.7E-08 71.6 24.9 205 501-707 75-334 (395)
353 PF04841 Vps16_N: Vps16, N-ter 97.9 0.0096 2.1E-07 67.2 29.9 189 535-735 62-271 (410)
354 PF03178 CPSF_A: CPSF A subuni 97.9 0.0011 2.4E-08 72.4 21.8 207 577-790 3-261 (321)
355 PF11768 DUF3312: Protein of u 97.9 0.00012 2.5E-09 82.2 13.3 81 510-592 257-337 (545)
356 COG5276 Uncharacterized conser 97.9 0.041 8.9E-07 57.1 29.4 270 513-792 87-367 (370)
357 PF03178 CPSF_A: CPSF A subuni 97.8 0.0067 1.5E-07 66.2 26.0 212 534-750 2-262 (321)
358 KOG1008 Uncharacterized conser 97.8 5.2E-06 1.1E-10 92.6 1.2 196 555-754 57-276 (783)
359 PF02897 Peptidase_S9_N: Proly 97.8 0.011 2.3E-07 67.0 27.8 217 557-777 126-383 (414)
360 COG3386 Gluconolactonase [Carb 97.8 0.0068 1.5E-07 65.3 24.5 216 560-783 30-274 (307)
361 PRK10115 protease 2; Provision 97.8 0.029 6.3E-07 67.6 32.4 237 514-758 128-399 (686)
362 PF08553 VID27: VID27 cytoplas 97.8 0.0042 9.1E-08 74.1 24.2 213 567-781 494-759 (794)
363 PF04841 Vps16_N: Vps16, N-ter 97.8 0.0086 1.9E-07 67.6 25.6 188 577-777 62-272 (410)
364 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.8 0.026 5.7E-07 65.8 30.1 145 525-672 121-338 (527)
365 PF14583 Pectate_lyase22: Olig 97.7 0.0053 1.1E-07 67.0 22.2 240 540-785 16-303 (386)
366 COG3490 Uncharacterized protei 97.7 0.005 1.1E-07 63.4 19.8 249 517-791 72-345 (366)
367 PF08553 VID27: VID27 cytoplas 97.5 0.0037 7.9E-08 74.6 19.0 141 523-666 492-646 (794)
368 PRK13616 lipoprotein LpqB; Pro 97.5 0.01 2.2E-07 69.8 22.3 209 533-749 328-564 (591)
369 PRK10115 protease 2; Provision 97.5 0.091 2E-06 63.3 30.8 198 555-760 127-353 (686)
370 KOG4640 Anaphase-promoting com 97.5 0.0004 8.7E-09 78.1 9.4 95 511-606 19-114 (665)
371 PF05694 SBP56: 56kDa selenium 97.4 0.045 9.7E-07 60.4 24.3 219 523-743 86-393 (461)
372 PF07995 GSDH: Glucose / Sorbo 97.4 0.058 1.2E-06 59.2 25.5 66 724-789 253-330 (331)
373 PF15390 DUF4613: Domain of un 97.4 0.033 7.1E-07 62.9 22.9 118 513-630 57-188 (671)
374 PRK13616 lipoprotein LpqB; Pro 97.4 0.022 4.8E-07 67.0 23.1 185 597-789 349-563 (591)
375 PF05096 Glu_cyclase_2: Glutam 97.4 0.14 3E-06 53.4 26.1 193 546-744 35-251 (264)
376 KOG1897 Damage-specific DNA bi 97.4 0.078 1.7E-06 63.1 26.8 270 513-790 584-894 (1096)
377 PF14655 RAB3GAP2_N: Rab3 GTPa 97.4 0.057 1.2E-06 60.3 24.7 88 517-606 6-117 (415)
378 PF14727 PHTB1_N: PTHB1 N-term 97.4 0.3 6.6E-06 54.8 30.4 259 524-790 37-356 (418)
379 KOG4499 Ca2+-binding protein R 97.4 0.04 8.8E-07 55.4 20.7 204 568-774 29-263 (310)
380 PF05096 Glu_cyclase_2: Glutam 97.3 0.17 3.7E-06 52.8 26.1 192 501-700 32-251 (264)
381 KOG2395 Protein involved in va 97.3 0.0041 8.9E-08 68.8 14.9 133 650-785 346-492 (644)
382 KOG1897 Damage-specific DNA bi 97.3 0.28 6.1E-06 58.6 30.3 214 568-790 686-938 (1096)
383 COG3386 Gluconolactonase [Carb 97.3 0.027 5.9E-07 60.7 20.3 186 602-792 29-241 (307)
384 PHA02713 hypothetical protein; 97.2 0.021 4.5E-07 67.2 20.4 213 535-758 273-538 (557)
385 KOG4441 Proteins containing BT 97.2 0.02 4.3E-07 67.3 19.6 229 522-758 283-551 (571)
386 KOG4499 Ca2+-binding protein R 97.2 0.038 8.3E-07 55.6 18.4 161 526-689 73-263 (310)
387 COG3204 Uncharacterized protei 97.2 0.086 1.9E-06 55.1 21.5 191 508-700 81-304 (316)
388 KOG2395 Protein involved in va 97.1 0.013 2.7E-07 65.1 15.9 138 569-708 349-500 (644)
389 KOG3621 WD40 repeat-containing 97.1 0.0059 1.3E-07 69.8 13.7 153 553-708 32-197 (726)
390 smart00320 WD40 WD40 repeats. 97.1 0.0012 2.5E-08 45.5 5.5 38 503-540 3-40 (40)
391 PF14783 BBS2_Mid: Ciliary BBS 97.1 0.016 3.6E-07 51.9 13.7 101 515-623 2-109 (111)
392 PRK13684 Ycf48-like protein; P 97.1 0.52 1.1E-05 51.7 28.4 267 512-792 45-329 (334)
393 PF14870 PSII_BNR: Photosynthe 97.1 0.36 7.7E-06 51.9 25.9 267 512-791 16-301 (302)
394 COG5276 Uncharacterized conser 97.0 0.54 1.2E-05 49.2 25.7 252 488-752 105-368 (370)
395 KOG4441 Proteins containing BT 97.0 0.03 6.4E-07 65.9 19.0 217 565-787 284-534 (571)
396 PF10647 Gmad1: Lipoprotein Lp 97.0 0.2 4.3E-06 52.7 23.2 189 599-788 25-231 (253)
397 smart00320 WD40 WD40 repeats. 97.0 0.0019 4.1E-08 44.4 5.5 39 544-582 2-40 (40)
398 KOG2377 Uncharacterized conser 97.0 0.084 1.8E-06 57.8 19.9 120 512-633 66-190 (657)
399 TIGR02604 Piru_Ver_Nterm putat 96.9 0.59 1.3E-05 52.0 27.0 102 513-616 14-142 (367)
400 TIGR03074 PQQ_membr_DH membran 96.9 0.24 5.2E-06 60.0 25.1 112 524-638 194-354 (764)
401 PF14870 PSII_BNR: Photosynthe 96.9 0.92 2E-05 48.8 29.6 222 554-788 16-255 (302)
402 KOG2079 Vacuolar assembly/sort 96.8 0.014 3.1E-07 69.7 13.9 101 523-627 98-202 (1206)
403 KOG2444 WD40 repeat protein [G 96.8 0.0014 3E-08 65.6 5.0 139 568-710 32-179 (238)
404 COG3204 Uncharacterized protei 96.8 0.32 6.9E-06 51.0 21.7 191 594-786 82-304 (316)
405 PHA02713 hypothetical protein; 96.8 0.097 2.1E-06 61.6 20.8 175 610-791 304-530 (557)
406 TIGR03118 PEPCTERM_chp_1 conse 96.8 0.85 1.8E-05 48.2 24.9 196 515-711 25-282 (336)
407 PF14783 BBS2_Mid: Ciliary BBS 96.8 0.073 1.6E-06 47.8 14.9 100 682-790 2-110 (111)
408 COG1520 FOG: WD40-like repeat 96.6 1.6 3.4E-05 48.6 29.6 149 522-675 67-225 (370)
409 COG3490 Uncharacterized protei 96.6 0.18 4E-06 52.3 18.0 169 606-784 44-245 (366)
410 PF05694 SBP56: 56kDa selenium 96.6 1.7 3.7E-05 48.4 29.7 218 565-783 86-392 (461)
411 PLN00033 photosystem II stabil 96.6 1.9 4E-05 48.5 35.1 109 679-791 280-396 (398)
412 KOG4640 Anaphase-promoting com 96.5 0.013 2.8E-07 66.4 9.7 90 680-773 21-114 (665)
413 PF10214 Rrn6: RNA polymerase 96.4 1.2 2.7E-05 54.5 27.2 176 552-754 77-277 (765)
414 COG4257 Vgb Streptogramin lyas 96.3 0.78 1.7E-05 47.6 20.3 207 557-777 64-288 (353)
415 PF14655 RAB3GAP2_N: Rab3 GTPa 96.3 0.92 2E-05 50.9 22.9 41 640-680 310-350 (415)
416 PLN02153 epithiospecifier prot 96.2 0.48 1E-05 52.1 20.8 174 610-786 86-325 (341)
417 PF14727 PHTB1_N: PTHB1 N-term 96.2 2.9 6.3E-05 47.1 29.7 223 566-792 37-316 (418)
418 COG4257 Vgb Streptogramin lyas 96.2 1.9 4.2E-05 44.8 23.2 236 514-762 63-314 (353)
419 PF02333 Phytase: Phytase; In 96.2 2.2 4.7E-05 47.2 24.6 186 522-710 66-292 (381)
420 PHA03098 kelch-like protein; P 96.1 0.22 4.8E-06 58.4 18.6 149 610-763 343-521 (534)
421 TIGR03074 PQQ_membr_DH membran 96.1 0.61 1.3E-05 56.6 22.3 66 612-677 262-354 (764)
422 PF10168 Nup88: Nuclear pore c 96.1 1.1 2.4E-05 53.9 23.9 95 554-669 84-181 (717)
423 KOG2079 Vacuolar assembly/sort 96.0 0.046 1E-06 65.5 11.8 73 510-584 128-203 (1206)
424 KOG2444 WD40 repeat protein [G 96.0 0.014 3E-07 58.6 6.5 134 528-669 34-168 (238)
425 KOG3630 Nuclear pore complex, 95.9 0.31 6.8E-06 59.0 17.6 140 514-656 102-262 (1405)
426 PHA03098 kelch-like protein; P 95.8 0.26 5.6E-06 57.8 17.2 181 522-709 293-512 (534)
427 KOG1916 Nuclear protein, conta 95.8 0.0039 8.5E-08 72.6 1.8 120 507-630 127-257 (1283)
428 PF10168 Nup88: Nuclear pore c 95.8 1.1 2.4E-05 53.9 22.0 29 511-539 83-111 (717)
429 PF07995 GSDH: Glucose / Sorbo 95.7 1.4 3.1E-05 48.3 21.4 77 671-748 245-330 (331)
430 PF10433 MMS1_N: Mono-function 95.7 5.9 0.00013 46.1 27.8 245 521-774 219-503 (504)
431 PF15390 DUF4613: Domain of un 95.7 0.78 1.7E-05 52.3 18.7 146 554-709 19-187 (671)
432 PF10647 Gmad1: Lipoprotein Lp 95.6 3.3 7.1E-05 43.5 22.8 108 514-624 25-140 (253)
433 TIGR03548 mutarot_permut cycli 95.6 1.1 2.4E-05 48.9 19.8 100 610-710 73-196 (323)
434 PRK13684 Ycf48-like protein; P 95.6 4.7 0.0001 44.2 25.7 147 554-706 172-329 (334)
435 KOG3630 Nuclear pore complex, 95.5 0.098 2.1E-06 63.1 11.7 143 555-698 101-262 (1405)
436 PLN02153 epithiospecifier prot 95.5 2.2 4.8E-05 46.9 22.0 108 523-634 32-173 (341)
437 COG1520 FOG: WD40-like repeat 95.4 5.6 0.00012 44.2 28.8 186 568-758 70-273 (370)
438 PF03022 MRJP: Major royal jel 95.4 3.7 8.1E-05 44.0 22.6 163 621-783 35-254 (287)
439 COG3823 Glutamine cyclotransfe 95.4 0.51 1.1E-05 47.0 14.1 176 565-742 55-247 (262)
440 TIGR02604 Piru_Ver_Nterm putat 95.3 0.79 1.7E-05 51.0 17.6 104 680-785 72-204 (367)
441 PF10395 Utp8: Utp8 family; I 95.2 5 0.00011 47.3 24.0 152 636-792 128-303 (670)
442 PF12894 Apc4_WD40: Anaphase-p 95.0 0.07 1.5E-06 40.3 5.7 33 512-545 11-43 (47)
443 PLN02193 nitrile-specifier pro 95.0 8.8 0.00019 44.3 29.8 171 610-785 176-387 (470)
444 PF14761 HPS3_N: Hermansky-Pud 95.0 3.3 7.2E-05 41.8 19.0 49 525-574 29-79 (215)
445 KOG3598 Thyroid hormone recept 95.0 0.018 4E-07 70.0 3.5 7 237-243 2198-2204(2220)
446 KOG2247 WD40 repeat-containing 94.8 0.01 2.2E-07 65.3 0.9 141 555-698 35-178 (615)
447 KOG2280 Vacuolar assembly/sort 94.7 3.6 7.9E-05 48.3 20.9 191 512-710 43-248 (829)
448 COG3292 Predicted periplasmic 94.7 1.5 3.2E-05 49.9 17.0 264 512-790 164-443 (671)
449 PHA02790 Kelch-like protein; P 94.5 0.98 2.1E-05 52.2 16.4 177 523-709 271-471 (480)
450 PLN02193 nitrile-specifier pro 94.5 3.8 8.2E-05 47.3 21.1 148 610-760 229-417 (470)
451 PF14761 HPS3_N: Hermansky-Pud 94.5 1.3 2.8E-05 44.7 14.7 136 650-791 29-211 (215)
452 TIGR03547 muta_rot_YjhT mutatr 94.4 4.9 0.00011 44.2 20.9 41 746-786 291-332 (346)
453 PRK14131 N-acetylneuraminic ac 94.4 4.9 0.00011 44.8 21.1 14 621-634 190-203 (376)
454 COG5167 VID27 Protein involved 94.3 1 2.2E-05 50.4 14.6 140 565-708 478-632 (776)
455 smart00036 CNH Domain found in 94.3 9.4 0.0002 41.2 29.7 231 523-763 12-280 (302)
456 KOG1916 Nuclear protein, conta 94.3 0.022 4.7E-07 66.7 1.9 118 515-633 186-328 (1283)
457 KOG4659 Uncharacterized conser 94.2 5.4 0.00012 49.5 21.2 29 430-458 409-439 (1899)
458 PF13449 Phytase-like: Esteras 94.1 9.5 0.00021 41.7 22.3 141 598-740 20-231 (326)
459 COG3823 Glutamine cyclotransfe 94.1 2.6 5.6E-05 42.2 15.4 170 523-699 55-248 (262)
460 PF10433 MMS1_N: Mono-function 93.7 17 0.00038 42.2 26.5 224 563-791 219-473 (504)
461 COG5167 VID27 Protein involved 93.7 1.9 4.1E-05 48.3 15.2 128 492-628 493-632 (776)
462 PF05935 Arylsulfotrans: Aryls 93.7 17 0.00037 42.0 25.2 140 533-678 127-312 (477)
463 PRK14131 N-acetylneuraminic ac 93.6 6.6 0.00014 43.8 20.2 39 747-785 314-353 (376)
464 COG1770 PtrB Protease II [Amin 93.5 18 0.00039 42.5 23.1 197 557-758 131-353 (682)
465 KOG2247 WD40 repeat-containing 93.5 0.0084 1.8E-07 66.0 -3.0 140 641-787 38-181 (615)
466 PF12234 Rav1p_C: RAVE protein 93.4 2.3 4.9E-05 50.1 16.2 109 680-792 30-154 (631)
467 PHA02790 Kelch-like protein; P 93.4 3.3 7.1E-05 47.9 17.7 166 610-785 272-456 (480)
468 TIGR03547 muta_rot_YjhT mutatr 93.3 13 0.00029 40.7 21.9 15 620-634 168-182 (346)
469 KOG1983 Tomosyn and related SN 93.3 2.1 4.5E-05 53.7 16.7 227 513-757 36-268 (993)
470 KOG2280 Vacuolar assembly/sort 93.2 4.6 9.9E-05 47.5 17.9 175 576-758 64-251 (829)
471 PF12894 Apc4_WD40: Anaphase-p 93.2 0.23 5E-06 37.5 5.2 31 554-584 11-41 (47)
472 PF12234 Rav1p_C: RAVE protein 93.1 1.9 4.1E-05 50.8 15.1 125 501-628 18-156 (631)
473 PLN00033 photosystem II stabil 93.1 18 0.00039 40.7 25.5 108 639-750 282-396 (398)
474 TIGR03548 mutarot_permut cycli 93.1 5.4 0.00012 43.4 18.2 108 523-634 72-200 (323)
475 PF08801 Nucleoporin_N: Nup133 93.0 5.1 0.00011 45.4 18.4 30 725-754 191-220 (422)
476 TIGR03606 non_repeat_PQQ dehyd 92.8 22 0.00047 40.6 31.8 59 508-566 25-90 (454)
477 COG1506 DAP2 Dipeptidyl aminop 92.8 17 0.00038 43.5 23.1 61 550-614 55-117 (620)
478 KOG2377 Uncharacterized conser 92.6 8.1 0.00017 43.0 17.7 147 518-668 28-186 (657)
479 PF07250 Glyoxal_oxid_N: Glyox 92.4 2.4 5.2E-05 44.1 13.2 129 661-789 48-194 (243)
480 KOG1896 mRNA cleavage and poly 92.3 38 0.00081 42.4 24.5 137 650-791 1047-1210(1366)
481 KOG1520 Predicted alkaloid syn 92.3 17 0.00037 39.9 19.8 151 526-700 78-239 (376)
482 KOG4659 Uncharacterized conser 92.3 27 0.00058 43.8 23.0 78 505-585 340-428 (1899)
483 KOG1900 Nuclear pore complex, 92.3 1.4 3.1E-05 54.6 12.8 161 531-710 96-274 (1311)
484 PF10395 Utp8: Utp8 family; I 92.2 4.2 9.2E-05 47.9 16.2 163 512-676 129-314 (670)
485 PF14781 BBS2_N: Ciliary BBSom 92.1 3.2 7E-05 38.7 12.1 106 648-758 9-130 (136)
486 KOG2109 WD40 repeat protein [G 91.9 0.35 7.7E-06 55.4 6.8 82 496-577 299-391 (788)
487 TIGR03118 PEPCTERM_chp_1 conse 91.8 20 0.00044 38.2 24.6 214 556-774 24-307 (336)
488 smart00036 CNH Domain found in 91.7 22 0.00048 38.4 24.8 202 511-720 41-279 (302)
489 PF14781 BBS2_N: Ciliary BBSom 91.6 5.6 0.00012 37.2 13.1 112 517-633 3-130 (136)
490 PF08728 CRT10: CRT10; InterP 91.6 4 8.7E-05 48.6 15.3 102 690-792 113-244 (717)
491 COG3292 Predicted periplasmic 91.5 25 0.00054 40.5 20.4 264 515-791 208-488 (671)
492 PF13449 Phytase-like: Esteras 91.5 25 0.00053 38.4 22.5 141 554-696 19-231 (326)
493 COG1506 DAP2 Dipeptidyl aminop 91.4 39 0.00084 40.5 27.4 61 508-571 55-117 (620)
494 PF07569 Hira: TUP1-like enhan 91.1 1.3 2.7E-05 45.6 9.5 62 730-792 17-93 (219)
495 KOG1898 Splicing factor 3b, su 91.0 14 0.0003 45.3 18.8 130 619-754 911-1049(1205)
496 KOG3616 Selective LIM binding 90.9 2.8 6E-05 48.9 12.4 107 514-627 16-125 (1636)
497 PRK05560 DNA gyrase subunit A; 90.8 50 0.0011 40.8 26.8 259 519-781 493-797 (805)
498 KOG1900 Nuclear pore complex, 90.7 2.2 4.9E-05 53.0 12.4 72 720-792 175-270 (1311)
499 PF10214 Rrn6: RNA polymerase 90.5 52 0.0011 40.5 27.7 155 511-668 78-277 (765)
500 PF03022 MRJP: Major royal jel 90.4 28 0.00061 37.3 25.8 185 514-699 2-255 (287)
No 1
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.3e-45 Score=377.55 Aligned_cols=311 Identities=26% Similarity=0.446 Sum_probs=277.7
Q ss_pred cceEEEEeCCCeeeecCCC---eeEeCCCcchhhcccccccCCCCCCceeeeccCCCCCCCCCCCcceeccCCcceeeee
Q 003840 430 KPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEAN 506 (792)
Q Consensus 430 k~~l~~s~Dg~~~~ss~s~---~lWD~~tg~~~~~~~~~~~~g~~d~~v~~~l~~d~~~~~d~~~~~~d~~~~~~~~~~~ 506 (792)
.-++.|+|||.++++++.+ +|||+.+.. ...
T Consensus 118 Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeT----------------------------------------------p~~ 151 (480)
T KOG0271|consen 118 VLSVQFSPTGSRLVTGSGDTTVRLWDLDTET----------------------------------------------PLF 151 (480)
T ss_pred EEEEEecCCCceEEecCCCceEEeeccCCCC----------------------------------------------cce
Confidence 3468899999999886655 788776532 456
Q ss_pred eeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCcee-EEeccCCCCEEEEEECC-----CCCeEEEEeCCCcEEE
Q 003840 507 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSK-TNLEEHSSLITDVRFSP-----SMPRLATSSFDKTVRV 580 (792)
Q Consensus 507 ~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~-~~l~~h~~~V~~i~fsp-----dg~~Lasgs~Dg~V~I 580 (792)
+.++|...|.|++|+|||+.||+|+.||.|++||.++++.+ ..|.+|...|++++|.| ..++||+++.||.|+|
T Consensus 152 t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrI 231 (480)
T KOG0271|consen 152 TCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRI 231 (480)
T ss_pred eecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEE
Confidence 78999999999999999999999999999999999988765 56899999999999976 5679999999999999
Q ss_pred EeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCC---eeEEE-----------Ee
Q 003840 581 WDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---TAQMR-----------FQ 646 (792)
Q Consensus 581 Wdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~---~~~v~-----------~s 646 (792)
||+.. +.++..+.+|...|+|++|-. ..+|++|+.|++|++|+...|++.+.++++ ++.++ |.
T Consensus 232 Wd~~~-~~~~~~lsgHT~~VTCvrwGG--~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~ 308 (480)
T KOG0271|consen 232 WDTKL-GTCVRTLSGHTASVTCVRWGG--EGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFD 308 (480)
T ss_pred EEccC-ceEEEEeccCccceEEEEEcC--CceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccc
Confidence 99986 789999999999999999984 458999999999999999999998888764 33333 33
Q ss_pred cCCC-------------------------EEEEEEcCCeEEEEECCCC-eEEEEecCCCCCeEEEEEcCCCCEEEEEeCC
Q 003840 647 PHLG-------------------------RYLAAAAENVVSILDAETQ-ACRLSLQGHTKPIDSVCWDPSGELLASVSED 700 (792)
Q Consensus 647 p~~~-------------------------~lla~s~dg~I~i~D~~t~-~~~~~l~~h~~~V~sv~~spdg~~Las~s~d 700 (792)
+.+. .+++++.|.++.+|+.... +++..+.+|..-|+.+.|+||++|||+++.|
T Consensus 309 ~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFD 388 (480)
T KOG0271|consen 309 HTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFD 388 (480)
T ss_pred cccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecc
Confidence 3333 4899999999999998655 5888999999999999999999999999999
Q ss_pred -eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCE
Q 003840 701 -SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGY 778 (792)
Q Consensus 701 -~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~~~~h~~~V~sl~fspdg~~ 778 (792)
.|++||-+++ +.+..+.+|-..|+.++|+.|.+.|++|+.|.++++||+++.+.. .+.+|.+.|.++.|+|||..
T Consensus 389 kSVkLW~g~tG---k~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~r 465 (480)
T KOG0271|consen 389 KSVKLWDGRTG---KFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQR 465 (480)
T ss_pred cceeeeeCCCc---chhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCce
Confidence 9999999888 888999999999999999999999999999999999999999887 78899999999999999999
Q ss_pred EEEEeCCCcEEEeC
Q 003840 779 VASASHDKFVKLWK 792 (792)
Q Consensus 779 LaSgs~DG~I~IWd 792 (792)
+++|+.|..++||.
T Consensus 466 V~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 466 VASGGKDKVLRLWR 479 (480)
T ss_pred eecCCCceEEEeec
Confidence 99999999999995
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6.2e-43 Score=357.93 Aligned_cols=287 Identities=23% Similarity=0.406 Sum_probs=261.7
Q ss_pred eeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEe
Q 003840 503 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 582 (792)
Q Consensus 503 ~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWd 582 (792)
.+-..+.||.+.|.|+.|+|+|+.||+|+.|.++++||+.+.....+.++|...|.||+|+|||+.||+|+.||.|++||
T Consensus 106 rCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwd 185 (480)
T KOG0271|consen 106 RCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWD 185 (480)
T ss_pred eeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEec
Confidence 44556789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceeEEecccCCCeEEEEEcCC----CCeEEEEEeCCCcEEEEEcCCCeeEEEeeCCe---eEEEEecCCCEEEEE
Q 003840 583 ADNPGYSLRTFMGHSASVMSLDFHPN----KDDLICSCDGDGEIRYWSINNGSCTRVFKGGT---AQMRFQPHLGRYLAA 655 (792)
Q Consensus 583 l~s~~~~i~~~~~h~~~V~sl~fspd----~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~---~~v~~sp~~~~lla~ 655 (792)
..++....+.+.+|...|++++|.|- ...++++++.||.|+|||+..+.++..+.++. +|++|--+ ++++++
T Consensus 186 pktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~-gliySg 264 (480)
T KOG0271|consen 186 PKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGE-GLIYSG 264 (480)
T ss_pred CCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCC-ceEEec
Confidence 99988888999999999999999863 23478899999999999999999999987764 55555433 688889
Q ss_pred EcCCeEEEEECCCCeEEEEecCCCCCeEEEEEc-----------CCC-------------------------CEEEEEeC
Q 003840 656 AAENVVSILDAETQACRLSLQGHTKPIDSVCWD-----------PSG-------------------------ELLASVSE 699 (792)
Q Consensus 656 s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~s-----------pdg-------------------------~~Las~s~ 699 (792)
+.|++|++|+...+++...+++|..+|+.++.+ +.+ +.|++|++
T Consensus 265 S~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsD 344 (480)
T KOG0271|consen 265 SQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSD 344 (480)
T ss_pred CCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecC
Confidence 999999999999999999999999999999876 223 35999999
Q ss_pred C-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCC
Q 003840 700 D-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETG 777 (792)
Q Consensus 700 d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~~~~h~~~V~sl~fspdg~ 777 (792)
| ++.+|+-.. ..+++..+.+|...|..+.|+||+++|++++.|..|++||.++|+.+ .+.+|-..|+.++|+.|.+
T Consensus 345 d~tlflW~p~~--~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsR 422 (480)
T KOG0271|consen 345 DFTLFLWNPFK--SKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSR 422 (480)
T ss_pred CceEEEecccc--cccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCcc
Confidence 9 999999753 33678889999999999999999999999999999999999999988 7889999999999999999
Q ss_pred EEEEEeCCCcEEEeC
Q 003840 778 YVASASHDKFVKLWK 792 (792)
Q Consensus 778 ~LaSgs~DG~I~IWd 792 (792)
+|++|+.|.++++||
T Consensus 423 LlVS~SkDsTLKvw~ 437 (480)
T KOG0271|consen 423 LLVSGSKDSTLKVWD 437 (480)
T ss_pred EEEEcCCCceEEEEE
Confidence 999999999999996
No 3
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=4.3e-41 Score=349.10 Aligned_cols=288 Identities=26% Similarity=0.428 Sum_probs=266.5
Q ss_pred cceeeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCC--CCeEEEEeCCCc
Q 003840 500 FSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPS--MPRLATSSFDKT 577 (792)
Q Consensus 500 ~~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspd--g~~Lasgs~Dg~ 577 (792)
.....+..--+.+.+|..+.|+.|++.||||+.+|.++||+..+...+.+|.+|...|.++.|+|. +..||+|+.||+
T Consensus 163 ~~~~l~~SQ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgt 242 (459)
T KOG0272|consen 163 QSLELVCSQVGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGT 242 (459)
T ss_pred hhhhhhhhhccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCc
Confidence 333444455578899999999999999999999999999999999999999999999999999996 568999999999
Q ss_pred EEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee---CCeeEEEEecCCCEEEE
Q 003840 578 VRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLGRYLA 654 (792)
Q Consensus 578 V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~---~~~~~v~~sp~~~~lla 654 (792)
|++|++++ ..++..+.+|...|..++|+|+|.+ |+|++.|.+-++||++++..+...+ .++.+++|.++|..+++
T Consensus 243 vklw~~~~-e~~l~~l~gH~~RVs~VafHPsG~~-L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~t 320 (459)
T KOG0272|consen 243 VKLWKLSQ-ETPLQDLEGHLARVSRVAFHPSGKF-LGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAAT 320 (459)
T ss_pred eeeeccCC-CcchhhhhcchhhheeeeecCCCce-eeecccccchhhcccccchhhHhhcccccccceeEecCCCceeec
Confidence 99999997 6788999999999999999999875 5599999999999999988765544 46788999999999999
Q ss_pred EEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeC
Q 003840 655 AAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHP 733 (792)
Q Consensus 655 ~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fsp 733 (792)
|+.|..-+|||+++++++..+.+|..+|.+|+|+|+|..||+|+.| +++|||++.. .++..+..|.+-|+.+.|+|
T Consensus 321 GGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r---~~ly~ipAH~nlVS~Vk~~p 397 (459)
T KOG0272|consen 321 GGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMR---SELYTIPAHSNLVSQVKYSP 397 (459)
T ss_pred cCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeeccc---ccceecccccchhhheEecc
Confidence 9999999999999999999999999999999999999999999999 9999999876 56899999999999999999
Q ss_pred -CCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003840 734 -TYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 792 (792)
Q Consensus 734 -dg~~L~sgs~dg~I~IwDl~~~~~~-~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd 792 (792)
.|.+|++++.|++++||...+..++ .+.+|++.|.++++++|+.+|+|++.|.+|++|.
T Consensus 398 ~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 398 QEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred cCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 7889999999999999999999988 7889999999999999999999999999999995
No 4
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=4.4e-39 Score=320.41 Aligned_cols=292 Identities=21% Similarity=0.375 Sum_probs=264.3
Q ss_pred CCcceeeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCc
Q 003840 498 QGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKT 577 (792)
Q Consensus 498 ~~~~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~ 577 (792)
....++..++|++|.++|.|+.|++|.++|++++.||++.|||.-+...+..+.-....|..++|+|.++++|+|+.|..
T Consensus 41 ~~i~~~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~ 120 (343)
T KOG0286|consen 41 GRIQMRTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNK 120 (343)
T ss_pred eeeeeeeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCce
Confidence 34566777999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCC-----ceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCC---eeEEEEec-C
Q 003840 578 VRVWDADNPG-----YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---TAQMRFQP-H 648 (792)
Q Consensus 578 V~IWdl~s~~-----~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~---~~~v~~sp-~ 648 (792)
+.||++.+.. ...+.+.+|.+.+.|+.|..|+ . |++++.|.++.+||++++..+..|.++ +..+.+.| +
T Consensus 121 Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~-~-ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~ 198 (343)
T KOG0286|consen 121 CSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDN-H-ILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSD 198 (343)
T ss_pred eEEEecccccccccceeeeeecCccceeEEEEEcCCC-c-eEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCC
Confidence 9999998641 3456788999999999999864 3 559999999999999999999998764 56788999 8
Q ss_pred CCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceE
Q 003840 649 LGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFH 727 (792)
Q Consensus 649 ~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~ 727 (792)
++.+++|+.|+..++||++.+.++.+|.+|+..|++|+|.|+|.-|++|++| ++++||++...+ ..+.........|+
T Consensus 199 ~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~-~a~ys~~~~~~git 277 (343)
T KOG0286|consen 199 GNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQE-LAVYSHDSIICGIT 277 (343)
T ss_pred CCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcE-EeeeccCcccCCce
Confidence 8999999999999999999999999999999999999999999999999999 999999998643 22333334456799
Q ss_pred EEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003840 728 SCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 792 (792)
Q Consensus 728 si~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd 792 (792)
+++|+..|++|++|..|.++.+||.-.++.+ .+.+|++.|+|+..+|||..|+||+.|..||||.
T Consensus 278 Sv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 278 SVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred eEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 9999999999999999999999999888877 7889999999999999999999999999999995
No 5
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=9.3e-37 Score=305.05 Aligned_cols=286 Identities=24% Similarity=0.424 Sum_probs=261.9
Q ss_pred eeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEC-CCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEe
Q 003840 504 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHT-DTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 582 (792)
Q Consensus 504 ~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl-~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWd 582 (792)
.+..+.+|++.|+++.|+|+|.+||+|+.|..|.+|++ ...+....+++|.+.|..+.|.+|++.|++++.|++|+.||
T Consensus 39 p~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD 118 (338)
T KOG0265|consen 39 PIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWD 118 (338)
T ss_pred hhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEe
Confidence 34557899999999999999999999999999999995 45667788899999999999999999999999999999999
Q ss_pred CCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEe--eCCeeEEEEecCCCEEEEEEcCCe
Q 003840 583 ADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF--KGGTAQMRFQPHLGRYLAAAAENV 660 (792)
Q Consensus 583 l~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~--~~~~~~v~~sp~~~~lla~s~dg~ 660 (792)
+++ ++.++.+.+|...|++++-..-|..++++++.|+++++||+++..+++.+ +.....+.|...+..+++|+-|+.
T Consensus 119 ~~t-G~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ 197 (338)
T KOG0265|consen 119 AET-GKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDND 197 (338)
T ss_pred ccc-ceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccCc
Confidence 998 88899999999999999977778889999999999999999999999988 567888999999999999999999
Q ss_pred EEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCc-ceEEEeecCCC----ceEEEEEeCC
Q 003840 661 VSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEG-ECVHELSCNGN----KFHSCVFHPT 734 (792)
Q Consensus 661 I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~-~~i~~~~~~~~----~i~si~fspd 734 (792)
|++||++.....+.+.+|...|+.+..+++|.++.+-+.| ++++||++..... .++..+.++.. ....|+|+|+
T Consensus 198 ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~ 277 (338)
T KOG0265|consen 198 IKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPN 277 (338)
T ss_pred eeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCC
Confidence 9999999999999999999999999999999999999999 9999999876443 44666666543 3578899999
Q ss_pred CCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEE
Q 003840 735 YPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKL 790 (792)
Q Consensus 735 g~~L~sgs~dg~I~IwDl~~~~~~-~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~I 790 (792)
+.++-+|+.|..+++||.....++ .+.+|.+.|+++.|+|...+|.+|+.|.+|++
T Consensus 278 ~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~l 334 (338)
T KOG0265|consen 278 GTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYL 334 (338)
T ss_pred CCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEe
Confidence 999999999999999999986666 88999999999999999999999999999986
No 6
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.5e-37 Score=322.69 Aligned_cols=272 Identities=24% Similarity=0.390 Sum_probs=249.3
Q ss_pred CcceEEEEeCCCeeeec---CCCeeEeCCCcchhhcccccccCCCCCCceeeeccCCCCCCCCCCCcceeccCCcceeee
Q 003840 429 SKPLMMFGTDGAGTLTS---PSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEA 505 (792)
Q Consensus 429 ~k~~l~~s~Dg~~~~ss---~s~~lWD~~tg~~~~~~~~~~~~g~~d~~v~~~l~~d~~~~~d~~~~~~d~~~~~~~~~~ 505 (792)
+.....||.|+..++++ +..++|+..++ ..+
T Consensus 177 Pis~~~fS~ds~~laT~swsG~~kvW~~~~~----------------------------------------------~~~ 210 (459)
T KOG0272|consen 177 PISGCSFSRDSKHLATGSWSGLVKVWSVPQC----------------------------------------------NLL 210 (459)
T ss_pred cceeeEeecCCCeEEEeecCCceeEeecCCc----------------------------------------------cee
Confidence 45567889999988874 33377766544 356
Q ss_pred eeeecCCCCeEEEEEcCC--CCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeC
Q 003840 506 NSVRASTSKVICCHFSSD--GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDA 583 (792)
Q Consensus 506 ~~l~~H~~~V~~lafspd--g~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl 583 (792)
.+|++|++.|.++.|+|. +..||+|+.||+|++|++++...+..+.+|...|..++|+|+|++|+|+|+|.+-++||+
T Consensus 211 ~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~ 290 (459)
T KOG0272|consen 211 QTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDL 290 (459)
T ss_pred EEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhccc
Confidence 789999999999999996 679999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCC---eeEEEEecCCCEEEEEEcCCe
Q 003840 584 DNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---TAQMRFQPHLGRYLAAAAENV 660 (792)
Q Consensus 584 ~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~---~~~v~~sp~~~~lla~s~dg~ 660 (792)
++ +..+....+|...|.+|+|++||. ++++|+.|..-+|||+++++++..+.++ +..+.|+|+|-.+++|+.|++
T Consensus 291 ~t-k~ElL~QEGHs~~v~~iaf~~DGS-L~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt 368 (459)
T KOG0272|consen 291 ET-KSELLLQEGHSKGVFSIAFQPDGS-LAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNT 368 (459)
T ss_pred cc-chhhHhhcccccccceeEecCCCc-eeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCc
Confidence 98 667777889999999999999986 8889999999999999999999998765 567899999999999999999
Q ss_pred EEEEECCCCeEEEEecCCCCCeEEEEEcC-CCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEE
Q 003840 661 VSILDAETQACRLSLQGHTKPIDSVCWDP-SGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSL 738 (792)
Q Consensus 661 I~i~D~~t~~~~~~l~~h~~~V~sv~~sp-dg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L 738 (792)
++|||++....++++.+|..-|+.|+|+| .|.+|++++.| +++||...+. .++..+.+|.++|.+|.+++++.+|
T Consensus 369 ~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~---~~~ksLaGHe~kV~s~Dis~d~~~i 445 (459)
T KOG0272|consen 369 CKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTW---SPLKSLAGHEGKVISLDISPDSQAI 445 (459)
T ss_pred EEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCc---ccchhhcCCccceEEEEeccCCceE
Confidence 99999999999999999999999999998 78899999999 9999998766 8899999999999999999999999
Q ss_pred EEEEcCCeEEEEE
Q 003840 739 LVIGCYQSLELWN 751 (792)
Q Consensus 739 ~sgs~dg~I~IwD 751 (792)
++++.|++|++|.
T Consensus 446 ~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 446 ATSSFDRTIKLWR 458 (459)
T ss_pred EEeccCceeeecc
Confidence 9999999999995
No 7
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=5.4e-35 Score=310.48 Aligned_cols=296 Identities=23% Similarity=0.370 Sum_probs=251.1
Q ss_pred ceeccCCcceeeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEec---cCCCCEEEEEECCCCCeE
Q 003840 493 GMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE---EHSSLITDVRFSPSMPRL 569 (792)
Q Consensus 493 ~~d~~~~~~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~---~h~~~V~~i~fspdg~~L 569 (792)
+..+..+.+|+...+++.|..-|.|+.|+|||.++|+++.||+|.|||-.+++.+..|. +|.+.|.+|+|+||+..|
T Consensus 171 ~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~ 250 (603)
T KOG0318|consen 171 TVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQF 250 (603)
T ss_pred eEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceE
Confidence 44556788999999999999999999999999999999999999999999999999998 899999999999999999
Q ss_pred EEEeCCCcEEEEeCCCCC------------------------------------------ceeEEecccCCCeEEEEEcC
Q 003840 570 ATSSFDKTVRVWDADNPG------------------------------------------YSLRTFMGHSASVMSLDFHP 607 (792)
Q Consensus 570 asgs~Dg~V~IWdl~s~~------------------------------------------~~i~~~~~h~~~V~sl~fsp 607 (792)
++++.|.+++|||+.+.. ..+..+.+|...|+++..++
T Consensus 251 ~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~ 330 (603)
T KOG0318|consen 251 LTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSP 330 (603)
T ss_pred EEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcC
Confidence 999999999999998531 11334558999999999999
Q ss_pred CCCeEEEEEeCCCcEEEEEcCCCeeE-------------------------------EEe--------------------
Q 003840 608 NKDDLICSCDGDGEIRYWSINNGSCT-------------------------------RVF-------------------- 636 (792)
Q Consensus 608 d~~~ll~sgs~Dg~I~iwdl~~~~~~-------------------------------~~~-------------------- 636 (792)
+++ .|++|+.||.|.-||+.++..- +.+
T Consensus 331 d~~-~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~ 409 (603)
T KOG0318|consen 331 DGK-TIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPK 409 (603)
T ss_pred CCC-EEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCce
Confidence 985 5569999999999998654311 000
Q ss_pred ----------------------e-----------CCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeE--EEEecCCCCC
Q 003840 637 ----------------------K-----------GGTAQMRFQPHLGRYLAAAAENVVSILDAETQAC--RLSLQGHTKP 681 (792)
Q Consensus 637 ----------------------~-----------~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~--~~~l~~h~~~ 681 (792)
. -...+++++|++..+++|+.|+.|+||.+..... ...+..|.++
T Consensus 410 ~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~ 489 (603)
T KOG0318|consen 410 GLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAA 489 (603)
T ss_pred eEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCC
Confidence 0 0123457889999999999999999999987643 3356679999
Q ss_pred eEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE--
Q 003840 682 IDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-- 758 (792)
Q Consensus 682 V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~-- 758 (792)
|++|+|+||+.|||+|... .|.+||+.+... ....+..|..+|.+++|+|+..++++|+-|-.|.||+++.....
T Consensus 490 iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~--~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~ 567 (603)
T KOG0318|consen 490 ITDVAYSPDGAYLAAGDASRKVVLYDVASREV--KTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHII 567 (603)
T ss_pred ceEEEECCCCcEEEEeccCCcEEEEEcccCce--ecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheE
Confidence 9999999999999999988 999999987643 45556668999999999999999999999999999999876543
Q ss_pred EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003840 759 TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 792 (792)
Q Consensus 759 ~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd 792 (792)
...+|...|+.+.|-. ...|++.+.|..|++|+
T Consensus 568 iknAH~~gVn~v~wld-e~tvvSsG~Da~iK~W~ 600 (603)
T KOG0318|consen 568 IKNAHLGGVNSVAWLD-ESTVVSSGQDANIKVWN 600 (603)
T ss_pred eccccccCceeEEEec-CceEEeccCcceeEEec
Confidence 4558999999999964 45788999999999995
No 8
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=5.9e-35 Score=289.61 Aligned_cols=283 Identities=22% Similarity=0.370 Sum_probs=244.7
Q ss_pred eeeeeeecCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEECC-----CCceeEEeccCCCCEEEEEECCCCCeEEEEeCCC
Q 003840 503 KEANSVRASTSKVICCHFSSD-GKLLATGGHDKKAVLWHTD-----TLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK 576 (792)
Q Consensus 503 ~~~~~l~~H~~~V~~lafspd-g~~Lasgs~Dg~I~vWdl~-----t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg 576 (792)
.....+++|++.|+.++..+. ...|++++.|.+|.+|++. .|..++.+++|...|..++.++||.+.++++.|+
T Consensus 6 ~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~ 85 (315)
T KOG0279|consen 6 VLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDG 85 (315)
T ss_pred eeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccc
Confidence 455678999999999999986 4688999999999999874 5677899999999999999999999999999999
Q ss_pred cEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee----CCeeEEEEecC--CC
Q 003840 577 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK----GGTAQMRFQPH--LG 650 (792)
Q Consensus 577 ~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~----~~~~~v~~sp~--~~ 650 (792)
++++||+.+ ++..+.|.+|...|.+++|++|+.. |++|+.|.+|++||+.......... +-+.+++|+|+ ..
T Consensus 86 ~lrlWDl~~-g~~t~~f~GH~~dVlsva~s~dn~q-ivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p 163 (315)
T KOG0279|consen 86 TLRLWDLAT-GESTRRFVGHTKDVLSVAFSTDNRQ-IVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNP 163 (315)
T ss_pred eEEEEEecC-CcEEEEEEecCCceEEEEecCCCce-eecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCc
Confidence 999999998 6889999999999999999999764 5599999999999998655444433 34789999999 57
Q ss_pred EEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEE
Q 003840 651 RYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSC 729 (792)
Q Consensus 651 ~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si 729 (792)
.|+.++.|++|++||+++.+....+.+|.+.++.++++|||.++++|+.| .+.+||++.+ +++..+ .+...|.++
T Consensus 164 ~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~---k~lysl-~a~~~v~sl 239 (315)
T KOG0279|consen 164 IIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEG---KNLYSL-EAFDIVNSL 239 (315)
T ss_pred EEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCC---ceeEec-cCCCeEeeE
Confidence 78889999999999999999999999999999999999999999999999 9999999876 555554 467789999
Q ss_pred EEeCCCCEEEEEEcCCeEEEEECCCCcEEE-----Eccc-----CCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003840 730 VFHPTYPSLLVIGCYQSLELWNMSENKTMT-----LTAH-----EGLIAALAVSTETGYVASASHDKFVKLWK 792 (792)
Q Consensus 730 ~fspdg~~L~sgs~dg~I~IwDl~~~~~~~-----~~~h-----~~~V~sl~fspdg~~LaSgs~DG~I~IWd 792 (792)
+|+|+..+|+.+. +..|+|||++++.++. +.+. .-...+++|++||..|++|-.|+.|++|.
T Consensus 240 ~fspnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~q 311 (315)
T KOG0279|consen 240 CFSPNRYWLCAAT-ATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQ 311 (315)
T ss_pred EecCCceeEeecc-CCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEE
Confidence 9999976665554 4569999999988761 1222 33456789999999999999999999994
No 9
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=5.6e-36 Score=304.65 Aligned_cols=288 Identities=23% Similarity=0.395 Sum_probs=264.3
Q ss_pred CcceeeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcE
Q 003840 499 GFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTV 578 (792)
Q Consensus 499 ~~~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V 578 (792)
-.+++..+.+.+|.+.|.|+++.|.+.+|++|+.|++|+|||+.++....++.+|...|..+++++.-.||++++.|+.|
T Consensus 138 HapwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~V 217 (460)
T KOG0285|consen 138 HAPWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQV 217 (460)
T ss_pred cCcceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCee
Confidence 35778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeC---CeeEEEEecCCCEEEEE
Q 003840 579 RVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAA 655 (792)
Q Consensus 579 ~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~sp~~~~lla~ 655 (792)
+.||++. .+.++.+.+|-..|.|++.+|.-+ +|++|+.|.++++||+++...+..+.+ .+..+.+.+.+..++++
T Consensus 218 KCwDLe~-nkvIR~YhGHlS~V~~L~lhPTld-vl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~ 295 (460)
T KOG0285|consen 218 KCWDLEY-NKVIRHYHGHLSGVYCLDLHPTLD-VLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITG 295 (460)
T ss_pred EEEechh-hhhHHHhccccceeEEEeccccce-eEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEe
Confidence 9999997 788999999999999999999855 667999999999999999998888875 46678889999999999
Q ss_pred EcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEeecCCCceEEEEEeCCC
Q 003840 656 AAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTY 735 (792)
Q Consensus 656 s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg 735 (792)
+.|++|++||++.++...++..|...|.+++.+|....|++++.|.|+-|++..+ ..+..+.+|...|.+++...|+
T Consensus 296 S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dnik~w~~p~g---~f~~nlsgh~~iintl~~nsD~ 372 (460)
T KOG0285|consen 296 SHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDNIKQWKLPEG---EFLQNLSGHNAIINTLSVNSDG 372 (460)
T ss_pred cCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCccceeccCCcc---chhhccccccceeeeeeeccCc
Confidence 9999999999999999999999999999999999999999999999999999776 6666788899999999998876
Q ss_pred CEEEEEEcCCeEEEEECCCCcEEEE---------cccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003840 736 PSLLVIGCYQSLELWNMSENKTMTL---------TAHEGLIAALAVSTETGYVASASHDKFVKLWK 792 (792)
Q Consensus 736 ~~L~sgs~dg~I~IwDl~~~~~~~~---------~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd 792 (792)
++++|+.+|.|.+||.+++..+.. ...+..|.+.+|...|..|++|..|.+|++|+
T Consensus 373 -v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~k 437 (460)
T KOG0285|consen 373 -VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYK 437 (460)
T ss_pred -eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEe
Confidence 688999999999999999876521 12456799999999999999999999999995
No 10
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=4.9e-34 Score=324.46 Aligned_cols=284 Identities=30% Similarity=0.551 Sum_probs=254.5
Q ss_pred eeeeecC-CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCc--eeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEE
Q 003840 505 ANSVRAS-TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK--SKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVW 581 (792)
Q Consensus 505 ~~~l~~H-~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~--~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IW 581 (792)
...+..| ...|.|+.|+++|++|++++.|+.|++|++.+.+ ....+.+|...|.+++|+|++++|++++.|++|+||
T Consensus 151 ~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriw 230 (456)
T KOG0266|consen 151 EQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIW 230 (456)
T ss_pred eeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEe
Confidence 4455444 8899999999999999999999999999998887 777888999999999999999999999999999999
Q ss_pred eCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeC---CeeEEEEecCCCEEEEEEcC
Q 003840 582 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAAE 658 (792)
Q Consensus 582 dl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~sp~~~~lla~s~d 658 (792)
|+...+..++++.+|...|++++|+|++ .++++|+.|++|+|||++++++++.+++ .+..++|++++..+++++.|
T Consensus 231 d~~~~~~~~~~l~gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d 309 (456)
T KOG0266|consen 231 DLKDDGRNLKTLKGHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYD 309 (456)
T ss_pred eccCCCeEEEEecCCCCceEEEEecCCC-CEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCC
Confidence 9976678999999999999999999999 7888999999999999999999988865 57788999999999999999
Q ss_pred CeEEEEECCCCe--EEEEecCCCCC--eEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCc---eEEEE
Q 003840 659 NVVSILDAETQA--CRLSLQGHTKP--IDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNK---FHSCV 730 (792)
Q Consensus 659 g~I~i~D~~t~~--~~~~l~~h~~~--V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~---i~si~ 730 (792)
+.|+|||+.++. ++..+..+... +++++|+|++++|++++.| .+++||+..+ .++..+.+|... +.+..
T Consensus 310 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~---~~~~~~~~~~~~~~~~~~~~ 386 (456)
T KOG0266|consen 310 GTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSG---KSVGTYTGHSNLVRCIFSPT 386 (456)
T ss_pred ccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCC---cceeeecccCCcceeEeccc
Confidence 999999999998 56777776655 9999999999999999999 9999999877 566666666553 44555
Q ss_pred EeCCCCEEEEEEcCCeEEEEECCCCcEE-EEccc-CCCeEEEEEeCCCCEEEEEe--CCCcEEEeC
Q 003840 731 FHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAH-EGLIAALAVSTETGYVASAS--HDKFVKLWK 792 (792)
Q Consensus 731 fspdg~~L~sgs~dg~I~IwDl~~~~~~-~~~~h-~~~V~sl~fspdg~~LaSgs--~DG~I~IWd 792 (792)
+++.+.++++|+.|+.|++||+.++..+ .+.+| ...|..+.|++...++++++ .|+.|++|+
T Consensus 387 ~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~ 452 (456)
T KOG0266|consen 387 LSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWK 452 (456)
T ss_pred ccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEec
Confidence 6789999999999999999999987766 78889 89999999999999999998 699999995
No 11
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=1.1e-33 Score=295.78 Aligned_cols=282 Identities=30% Similarity=0.558 Sum_probs=251.8
Q ss_pred eeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCC
Q 003840 506 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN 585 (792)
Q Consensus 506 ~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s 585 (792)
..+++|.+.|++++|++++++|++++.||.|++|++.+++....+..|...+..+.|++++++|++++.||.|++||+.+
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~ 82 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLET 82 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCc
Confidence 46779999999999999999999999999999999999988888999999999999999999999999999999999987
Q ss_pred CCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee---CCeeEEEEecCCCEEEEEEcCCeEE
Q 003840 586 PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLGRYLAAAAENVVS 662 (792)
Q Consensus 586 ~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~---~~~~~v~~sp~~~~lla~s~dg~I~ 662 (792)
...+..+..|...|.+++|++++ .++++++.|+.|++||+++++....+. ..+.++.|++++..+++++.++.|+
T Consensus 83 -~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~ 160 (289)
T cd00200 83 -GECVRTLTGHTSYVSSVAFSPDG-RILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIK 160 (289)
T ss_pred -ccceEEEeccCCcEEEEEEcCCC-CEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEE
Confidence 56677788899999999999984 577677789999999999888777765 3478899999977777666699999
Q ss_pred EEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEE
Q 003840 663 ILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVI 741 (792)
Q Consensus 663 i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sg 741 (792)
+||+++++.+..+..|...|.+++|+++++.|++++.+ .|++||++.+ ..+..+..+...+.+++|++++.+++++
T Consensus 161 i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 237 (289)
T cd00200 161 LWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTG---KCLGTLRGHENGVNSVAFSPDGYLLASG 237 (289)
T ss_pred EEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCC---ceecchhhcCCceEEEEEcCCCcEEEEE
Confidence 99999999888888999999999999999888888877 9999999875 5666666778899999999998888888
Q ss_pred EcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003840 742 GCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 792 (792)
Q Consensus 742 s~dg~I~IwDl~~~~~~-~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd 792 (792)
+.++.|++||+.+++.. .+..|...|.+++|++++.+|++++.||.|++||
T Consensus 238 ~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 238 SEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred cCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 87999999999987766 5668889999999999999999999999999997
No 12
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.7e-34 Score=281.73 Aligned_cols=265 Identities=21% Similarity=0.440 Sum_probs=238.5
Q ss_pred EEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCc-eeEEecccCCCeEEEE
Q 003840 526 LLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGY-SLRTFMGHSASVMSLD 604 (792)
Q Consensus 526 ~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~-~i~~~~~h~~~V~sl~ 604 (792)
+||++++|.+|++|...+|.+..++....+.|+.+...|+++.||+++.-. ||+||+++... ++.+|.+|...|+++.
T Consensus 12 iLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~qh-vRlyD~~S~np~Pv~t~e~h~kNVtaVg 90 (311)
T KOG0315|consen 12 ILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQH-VRLYDLNSNNPNPVATFEGHTKNVTAVG 90 (311)
T ss_pred EEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccCCe-eEEEEccCCCCCceeEEeccCCceEEEE
Confidence 899999999999999999999999998899999999999999999998765 99999998554 8999999999999999
Q ss_pred EcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee--CCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecC-CCCC
Q 003840 605 FHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK--GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQG-HTKP 681 (792)
Q Consensus 605 fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~--~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~-h~~~ 681 (792)
|..+|+ .+++|++||+++|||++...+-+.|. .+++++..+|+...|+++..+|.|++||+....+...+.. ....
T Consensus 91 F~~dgr-WMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~ 169 (311)
T KOG0315|consen 91 FQCDGR-WMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTS 169 (311)
T ss_pred EeecCe-EEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcc
Confidence 999976 56699999999999999988777654 6789999999999999999999999999998866655543 4567
Q ss_pred eEEEEEcCCCCEEEEEeCC-eEEEEECCCCC---CcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcE
Q 003840 682 IDSVCWDPSGELLASVSED-SVRVWTVGSGS---EGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKT 757 (792)
Q Consensus 682 V~sv~~spdg~~Las~s~d-~I~IwDl~s~~---~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~ 757 (792)
|.++...|||.+|+.+... ..++|++-... ...++..+..|...+..|.++||+++|++++.|.+++||+.++.-.
T Consensus 170 i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~k 249 (311)
T KOG0315|consen 170 IQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFK 249 (311)
T ss_pred eeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCcee
Confidence 9999999999999988877 99999997642 3567778889999999999999999999999999999999998722
Q ss_pred --EEEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003840 758 --MTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 792 (792)
Q Consensus 758 --~~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd 792 (792)
+.+.+|...+++++||.||.||+||+.|+.+++|+
T Consensus 250 le~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~ 286 (311)
T KOG0315|consen 250 LELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWD 286 (311)
T ss_pred eEEEeecCCceEEeeeeccCccEEEecCCCCceeecc
Confidence 26789999999999999999999999999999996
No 13
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.6e-35 Score=301.17 Aligned_cols=289 Identities=26% Similarity=0.493 Sum_probs=268.5
Q ss_pred cceeeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEE
Q 003840 500 FSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVR 579 (792)
Q Consensus 500 ~~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~ 579 (792)
..+.+...+.+|...|+.+-|+|+-..+++++.|++|++||+.++++...+++|.+.|.+|+|+..|++|++++.|=.+.
T Consensus 96 pRp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~ 175 (406)
T KOG0295|consen 96 PRPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAK 175 (406)
T ss_pred CCCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchh
Confidence 44567778889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCC---eeEEEEecCCCEEEEEE
Q 003840 580 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---TAQMRFQPHLGRYLAAA 656 (792)
Q Consensus 580 IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~---~~~v~~sp~~~~lla~s 656 (792)
+||.+.-..+++.+.+|...|.+++|-|.|+ .|++|+.|.+|+.|++.++.|++.|.++ +..++.+.|+..+++++
T Consensus 176 LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd-~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s 254 (406)
T KOG0295|consen 176 LWDFDTFFRCIKSLIGHEHGVSSVFFLPLGD-HILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCS 254 (406)
T ss_pred heeHHHHHHHHHHhcCcccceeeEEEEecCC-eeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecC
Confidence 9999876678888999999999999999986 5559999999999999999999999876 45577788888888888
Q ss_pred cCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCC---------------CCEEEEEeCC-eEEEEECCCCCCcceEEEee
Q 003840 657 AENVVSILDAETQACRLSLQGHTKPIDSVCWDPS---------------GELLASVSED-SVRVWTVGSGSEGECVHELS 720 (792)
Q Consensus 657 ~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spd---------------g~~Las~s~d-~I~IwDl~s~~~~~~i~~~~ 720 (792)
.|.+|++|-+.++.+...+..|+.+|.|++|.|. +.++++++.| +|++||+.++ .|+.++.
T Consensus 255 ~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg---~cL~tL~ 331 (406)
T KOG0295|consen 255 NDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTG---MCLFTLV 331 (406)
T ss_pred CCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCC---eEEEEEe
Confidence 8999999999999999999999999999999873 2489999999 9999999888 9999999
Q ss_pred cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003840 721 CNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 792 (792)
Q Consensus 721 ~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd 792 (792)
+|.+.|..++|+|.|+||+++.+|+++++||+.++.++ .+..|...|++++|+.+..|++||+-|-.+++|.
T Consensus 332 ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 332 GHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred cccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeee
Confidence 99999999999999999999999999999999999998 7789999999999999999999999999999995
No 14
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=4.6e-36 Score=310.30 Aligned_cols=275 Identities=22% Similarity=0.444 Sum_probs=247.3
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeE
Q 003840 512 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLR 591 (792)
Q Consensus 512 ~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~ 591 (792)
...|..|.|.|+|+.|++|+..|.+.+|+..+......+..|...|+++.|++++.++++|+.+|.|++|+..- ..+.
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnm--nnVk 173 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNM--NNVK 173 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccch--hhhH
Confidence 45689999999999999999999999999988777778889999999999999999999999999999999874 3444
Q ss_pred Eeccc-CCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCC---eeEEEEecCCCEEEEEEcCCeEEEEECC
Q 003840 592 TFMGH-SASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---TAQMRFQPHLGRYLAAAAENVVSILDAE 667 (792)
Q Consensus 592 ~~~~h-~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~---~~~v~~sp~~~~lla~s~dg~I~i~D~~ 667 (792)
.+..| ...|++++|+|++. .|++|++||+|+|||....+..+.+.++ +.++.|+|..+.+++++.|+.|++||.+
T Consensus 174 ~~~ahh~eaIRdlafSpnDs-kF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDpr 252 (464)
T KOG0284|consen 174 IIQAHHAEAIRDLAFSPNDS-KFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPR 252 (464)
T ss_pred HhhHhhhhhhheeccCCCCc-eeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCC
Confidence 55554 48999999999754 6679999999999999988877777664 6789999999999999999999999999
Q ss_pred CCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCC-CEEEEEEcCC
Q 003840 668 TQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTY-PSLLVIGCYQ 745 (792)
Q Consensus 668 t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg-~~L~sgs~dg 745 (792)
++.++.++.+|+..|..+.|++++++|++++.| .+++||+++. +.+..+.+|...++++.|+|-. ..|.+|+.||
T Consensus 253 Sg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~m---kEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dg 329 (464)
T KOG0284|consen 253 SGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTM---KELFTYRGHKKDVTSLTWHPLNESLFTSGGSDG 329 (464)
T ss_pred CcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHh---HHHHHhhcchhhheeeccccccccceeeccCCC
Confidence 999999999999999999999999999999999 9999999865 6777888999999999999954 5677889999
Q ss_pred eEEEEECCCCcEE--EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003840 746 SLELWNMSENKTM--TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 792 (792)
Q Consensus 746 ~I~IwDl~~~~~~--~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd 792 (792)
.|..|.+...+.+ ...+|...|++++|+|-|.+|++|+.|.++++|.
T Consensus 330 svvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~ 378 (464)
T KOG0284|consen 330 SVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWT 378 (464)
T ss_pred ceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeec
Confidence 9999999865555 4558999999999999999999999999999993
No 15
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.4e-33 Score=307.12 Aligned_cols=286 Identities=23% Similarity=0.386 Sum_probs=244.6
Q ss_pred eeeeeeeecCCCCeEEEEEcCCCCEEEEEeCC-CeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEE
Q 003840 502 FKEANSVRASTSKVICCHFSSDGKLLATGGHD-KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV 580 (792)
Q Consensus 502 ~~~~~~l~~H~~~V~~lafspdg~~Lasgs~D-g~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~I 580 (792)
|..+..+.-...+|..++|+..|++||.|+.. |.+.||++.+...+....+|...|++++++|||.+||||+.||.|+|
T Consensus 297 f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKv 376 (893)
T KOG0291|consen 297 FNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKV 376 (893)
T ss_pred ceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEE
Confidence 34455555555677778888888888887654 78889999888888888999999999999999999999999999999
Q ss_pred EeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCC----eeEEEEecCCCEEEEEE
Q 003840 581 WDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG----TAQMRFQPHLGRYLAAA 656 (792)
Q Consensus 581 Wdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~----~~~v~~sp~~~~lla~s 656 (792)
||..+ +.++.+|..|...|+.+.|+..++. +++.+-||+|+.||+...++.++|..+ ..+++..|.|..+++|+
T Consensus 377 Wn~~S-gfC~vTFteHts~Vt~v~f~~~g~~-llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~ 454 (893)
T KOG0291|consen 377 WNTQS-GFCFVTFTEHTSGVTAVQFTARGNV-LLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGA 454 (893)
T ss_pred EeccC-ceEEEEeccCCCceEEEEEEecCCE-EEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeec
Confidence 99998 8999999999999999999999764 558899999999999999999998764 46688888888888888
Q ss_pred cCC-eEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCC
Q 003840 657 AEN-VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPT 734 (792)
Q Consensus 657 ~dg-~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspd 734 (792)
-|. .|++|++.+|+.+..+.+|+++|.+++|+|++..|++++.| +|++||+-... ..+.++ .....+..++|+|+
T Consensus 455 ~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~--~~vEtl-~i~sdvl~vsfrPd 531 (893)
T KOG0291|consen 455 QDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSS--GTVETL-EIRSDVLAVSFRPD 531 (893)
T ss_pred cceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccC--ceeeeE-eeccceeEEEEcCC
Confidence 876 89999999999999999999999999999999999999999 99999986431 122222 24567899999999
Q ss_pred CCEEEEEEcCCeEEEEECCCCcEE-EE--------------------cccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003840 735 YPSLLVIGCYQSLELWNMSENKTM-TL--------------------TAHEGLIAALAVSTETGYVASASHDKFVKLWK 792 (792)
Q Consensus 735 g~~L~sgs~dg~I~IwDl~~~~~~-~~--------------------~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd 792 (792)
|+.|++++.||.|.+||...+..+ .+ .......+.+++++||++|++||..+.|+||+
T Consensus 532 G~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~ 610 (893)
T KOG0291|consen 532 GKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYD 610 (893)
T ss_pred CCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEE
Confidence 999999999999999999875433 11 11235789999999999999999999999985
No 16
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=3.3e-33 Score=272.77 Aligned_cols=279 Identities=23% Similarity=0.324 Sum_probs=242.7
Q ss_pred CCCCCCcceeccCCcceeeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCc--eeEEeccCCCCEEEEEEC
Q 003840 486 PRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK--SKTNLEEHSSLITDVRFS 563 (792)
Q Consensus 486 ~~d~~~~~~d~~~~~~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~--~~~~l~~h~~~V~~i~fs 563 (792)
+.|-++|.|....| .+.+++....+.|..+.+.||+++||+++. -.|++||+.+++ ++.++++|...|++|.|.
T Consensus 17 ~YDhTIRfWqa~tG---~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~ 92 (311)
T KOG0315|consen 17 GYDHTIRFWQALTG---ICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQ 92 (311)
T ss_pred cCcceeeeeehhcC---eEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEEEEe
Confidence 34566777777766 477888888899999999999999999975 479999998765 588999999999999999
Q ss_pred CCCCeEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEe----eCC
Q 003840 564 PSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF----KGG 639 (792)
Q Consensus 564 pdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~----~~~ 639 (792)
.+|+.+++|++||+++|||++. ..+-+. ..|..+|+++..+|+-..|| +|+.+|.|++||+.+..+...+ ...
T Consensus 93 ~dgrWMyTgseDgt~kIWdlR~-~~~qR~-~~~~spVn~vvlhpnQteLi-s~dqsg~irvWDl~~~~c~~~liPe~~~~ 169 (311)
T KOG0315|consen 93 CDGRWMYTGSEDGTVKIWDLRS-LSCQRN-YQHNSPVNTVVLHPNQTELI-SGDQSGNIRVWDLGENSCTHELIPEDDTS 169 (311)
T ss_pred ecCeEEEecCCCceEEEEeccC-cccchh-ccCCCCcceEEecCCcceEE-eecCCCcEEEEEccCCccccccCCCCCcc
Confidence 9999999999999999999997 333344 45789999999999987766 9999999999999988776654 245
Q ss_pred eeEEEEecCCCEEEEEEcCCeEEEEECCCC------eEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCC
Q 003840 640 TAQMRFQPHLGRYLAAAAENVVSILDAETQ------ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSE 712 (792)
Q Consensus 640 ~~~v~~sp~~~~lla~s~dg~I~i~D~~t~------~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~ 712 (792)
+.++.+.+++.+++++...|..++|++-+. +++..+..|.+.+..+.++||++||++++.| +++||+++..
T Consensus 170 i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~-- 247 (311)
T KOG0315|consen 170 IQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF-- 247 (311)
T ss_pred eeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCc--
Confidence 678899999999999999999999998653 4667788999999999999999999999999 9999999765
Q ss_pred cceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEe
Q 003840 713 GECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVS 773 (792)
Q Consensus 713 ~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~~~~h~~~V~sl~fs 773 (792)
.+.-..+.+|...++.|+|+.|+.||++++.|+.+++||+..++.+ ...+|.....|++..
T Consensus 248 ~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 248 FKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred eeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCcccccEEEEee
Confidence 4666778889999999999999999999999999999999999987 667888877777753
No 17
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.4e-33 Score=296.55 Aligned_cols=281 Identities=25% Similarity=0.484 Sum_probs=245.7
Q ss_pred eeeeeecCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEECCC--CceeE--Eec----------cCCCCEEEEEECCCCCe
Q 003840 504 EANSVRASTSKVICCHFSSDGK-LLATGGHDKKAVLWHTDT--LKSKT--NLE----------EHSSLITDVRFSPSMPR 568 (792)
Q Consensus 504 ~~~~l~~H~~~V~~lafspdg~-~Lasgs~Dg~I~vWdl~t--~~~~~--~l~----------~h~~~V~~i~fspdg~~ 568 (792)
.++.++ |+.+|.+++|+|-.. +|++|+.|-..++|++.. ..... .|+ .....|++++|+.+|..
T Consensus 171 ~~kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~ 249 (524)
T KOG0273|consen 171 KAKVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTL 249 (524)
T ss_pred ceeecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCe
Confidence 344555 999999999999655 999999999999999863 11111 111 13467999999999999
Q ss_pred EEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCC---eeEEEE
Q 003840 569 LATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---TAQMRF 645 (792)
Q Consensus 569 Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~---~~~v~~ 645 (792)
||+|++||.++||+.. +..+.++..|+++|.+|.|+.+|.+++ +++.|+++.+||..++.+...|..+ ...+.|
T Consensus 250 LatG~~~G~~riw~~~--G~l~~tl~~HkgPI~slKWnk~G~yil-S~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW 326 (524)
T KOG0273|consen 250 LATGSEDGEARIWNKD--GNLISTLGQHKGPIFSLKWNKKGTYIL-SGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDW 326 (524)
T ss_pred EEEeecCcEEEEEecC--chhhhhhhccCCceEEEEEcCCCCEEE-eccCCccEEEEeccCceEEEeeeeccCCccceEE
Confidence 9999999999999997 577889999999999999999987555 9999999999999999888776533 345777
Q ss_pred ecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCC
Q 003840 646 QPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGN 724 (792)
Q Consensus 646 sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~ 724 (792)
..+ ..+++++.|+.|+||.+....++.++.+|.++|.++.|+|.|.+|+++++| +++||..... .+++.+..|..
T Consensus 327 ~~~-~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~---~~~~~l~~Hsk 402 (524)
T KOG0273|consen 327 QSN-DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQS---NSVHDLQAHSK 402 (524)
T ss_pred ecC-ceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCC---cchhhhhhhcc
Confidence 655 678889999999999999999999999999999999999999999999999 9999998665 78888889999
Q ss_pred ceEEEEEeCCCC---------EEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003840 725 KFHSCVFHPTYP---------SLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 792 (792)
Q Consensus 725 ~i~si~fspdg~---------~L~sgs~dg~I~IwDl~~~~~~-~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd 792 (792)
.|+.+.|+|++. .|++++.|++|++||+..+.++ .+..|..+|++++|+|+|+|||+|+.||.|.||+
T Consensus 403 ei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws 480 (524)
T KOG0273|consen 403 EIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWS 480 (524)
T ss_pred ceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEecc
Confidence 999999999654 6899999999999999999988 7779999999999999999999999999999995
No 18
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=1e-34 Score=306.31 Aligned_cols=290 Identities=19% Similarity=0.362 Sum_probs=252.5
Q ss_pred ceeeeeeeecCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCC-CceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcE
Q 003840 501 SFKEANSVRASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTDT-LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTV 578 (792)
Q Consensus 501 ~~~~~~~l~~H~~~V~~lafsp-dg~~Lasgs~Dg~I~vWdl~t-~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V 578 (792)
+-+.+..+.+|+..|+++.|.| .+.+|++++.|+.|+||++.. +++++++.+|..+|.+++|+.+|..|+++++|+.|
T Consensus 203 Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~l 282 (503)
T KOG0282|consen 203 PKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFL 282 (503)
T ss_pred cHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceee
Confidence 4457788999999999999999 899999999999999999876 89999999999999999999999999999999999
Q ss_pred EEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee---CCeeEEEEecCCCEEEEE
Q 003840 579 RVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLGRYLAA 655 (792)
Q Consensus 579 ~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~---~~~~~v~~sp~~~~lla~ 655 (792)
++||+++ +.++..+. ....++|+.|+|++.++|++|+.|+.|+.||+++++.+..+. +.+..+.|.+++.+++++
T Consensus 283 KlwDtET-G~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFiss 360 (503)
T KOG0282|consen 283 KLWDTET-GQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISS 360 (503)
T ss_pred eeecccc-ceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeee
Confidence 9999998 66666665 455689999999998899999999999999999999887765 457789999999999999
Q ss_pred EcCCeEEEEECCCCeEEEEecC-CCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCC--CceEEEEE
Q 003840 656 AAENVVSILDAETQACRLSLQG-HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNG--NKFHSCVF 731 (792)
Q Consensus 656 s~dg~I~i~D~~t~~~~~~l~~-h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~--~~i~si~f 731 (792)
+.|+.++||+.+....+..+.. +.....||..+|++.++++-+.| .|.+|.+...-.....+.+.+|. +.-..|.|
T Consensus 361 SDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~f 440 (503)
T KOG0282|consen 361 SDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDF 440 (503)
T ss_pred ccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEE
Confidence 9999999999998866544332 23346688999999999999999 99999976543334444555553 44667899
Q ss_pred eCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCC-CCEEEEEeCCCcEEEeC
Q 003840 732 HPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTE-TGYVASASHDKFVKLWK 792 (792)
Q Consensus 732 spdg~~L~sgs~dg~I~IwDl~~~~~~-~~~~h~~~V~sl~fspd-g~~LaSgs~DG~I~IWd 792 (792)
+|||++|++|..||.+.+||.++-+.+ .+.+|+..|..+.|+|- ...||||+.||.|+|||
T Consensus 441 SpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 441 SPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred cCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 999999999999999999999999888 78899999999999994 45899999999999997
No 19
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=2.1e-32 Score=270.46 Aligned_cols=281 Identities=22% Similarity=0.423 Sum_probs=239.1
Q ss_pred eeeeeeeecCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEECCC---CceeEEec-cCCCCEEEEEECCCCCeEEEEeCCC
Q 003840 502 FKEANSVRASTSKVICCHFSSD-GKLLATGGHDKKAVLWHTDT---LKSKTNLE-EHSSLITDVRFSPSMPRLATSSFDK 576 (792)
Q Consensus 502 ~~~~~~l~~H~~~V~~lafspd-g~~Lasgs~Dg~I~vWdl~t---~~~~~~l~-~h~~~V~~i~fspdg~~Lasgs~Dg 576 (792)
+..+..+.+|.+.|..++|+|- |..||+|+.|+.|+||+... ..++..+. +|...|++|+|+|.|++|++|++|.
T Consensus 4 l~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~ 83 (312)
T KOG0645|consen 4 LILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDA 83 (312)
T ss_pred ceeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccc
Confidence 3467889999999999999998 99999999999999999984 45555553 6999999999999999999999999
Q ss_pred cEEEEeCCCC-CceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCC---eeEEEeeC---CeeEEEEecCC
Q 003840 577 TVRVWDADNP-GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG---SCTRVFKG---GTAQMRFQPHL 649 (792)
Q Consensus 577 ~V~IWdl~s~-~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~---~~~~~~~~---~~~~v~~sp~~ 649 (792)
++.||.-..+ -+++.++.+|...|.|++|+++|+ +||+|+.|..|.||.+..+ ++...+.. .+..+.|+|..
T Consensus 84 t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~-~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~ 162 (312)
T KOG0645|consen 84 TVVIWKKEDGEFECVATLEGHENEVKCVAWSASGN-YLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTE 162 (312)
T ss_pred eEEEeecCCCceeEEeeeeccccceeEEEEcCCCC-EEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCc
Confidence 9999987642 367889999999999999999976 6779999999999999854 35555554 45678999999
Q ss_pred CEEEEEEcCCeEEEEECC---CCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCc
Q 003840 650 GRYLAAAAENVVSILDAE---TQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNK 725 (792)
Q Consensus 650 ~~lla~s~dg~I~i~D~~---t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~ 725 (792)
..|++++.|++|++|+.. ...++.++.+|...|.+++|++.|..|+++++| +|+||.+.+. .-..|...
T Consensus 163 dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~-------~~~~~sr~ 235 (312)
T KOG0645|consen 163 DLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD-------LSGMHSRA 235 (312)
T ss_pred ceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccC-------cchhcccc
Confidence 999999999999999876 347899999999999999999999999999999 9999986532 11235678
Q ss_pred eEEEEEeCCCCEEEEEEcCCeEEEEECCCC---c---EE--EEcccCCCeEEEEEeCC-CCEEEEEeCCCcEEEeC
Q 003840 726 FHSCVFHPTYPSLLVIGCYQSLELWNMSEN---K---TM--TLTAHEGLIAALAVSTE-TGYVASASHDKFVKLWK 792 (792)
Q Consensus 726 i~si~fspdg~~L~sgs~dg~I~IwDl~~~---~---~~--~~~~h~~~V~sl~fspd-g~~LaSgs~DG~I~IWd 792 (792)
++.+.|. ...|++++.|+.|++|.-... . .+ ....|+..|+++.|.|. .++|++|++||.|++|.
T Consensus 236 ~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~ 309 (312)
T KOG0645|consen 236 LYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWE 309 (312)
T ss_pred eEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEE
Confidence 8899998 457999999999999976542 1 11 34478999999999994 67999999999999994
No 20
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6.4e-34 Score=294.25 Aligned_cols=287 Identities=19% Similarity=0.320 Sum_probs=242.6
Q ss_pred CcceeeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC---CceeEEeccCCCCEEEEEECCCCCeEEEEeCC
Q 003840 499 GFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT---LKSKTNLEEHSSLITDVRFSPSMPRLATSSFD 575 (792)
Q Consensus 499 ~~~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t---~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~D 575 (792)
.+++.+...+..|++.|+-+.||++|+|||+++.|.+..+|++.. .+.++++.+|..+|..|.|+||.++|++|+.|
T Consensus 211 qip~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~ 290 (519)
T KOG0293|consen 211 QIPSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFD 290 (519)
T ss_pred cCCchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCch
Confidence 456778889999999999999999999999999999999998754 35588899999999999999999999999999
Q ss_pred CcEEEEeCCCCCceeEEec-ccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee----CCeeEEEEecCCC
Q 003840 576 KTVRVWDADNPGYSLRTFM-GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK----GGTAQMRFQPHLG 650 (792)
Q Consensus 576 g~V~IWdl~s~~~~i~~~~-~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~----~~~~~v~~sp~~~ 650 (792)
..+++||+.+ +.....+. ++...+.+++|.||+..++ +|+.|+.|..||++.. ....++ ..+.++++.+||+
T Consensus 291 e~~~lwDv~t-gd~~~~y~~~~~~S~~sc~W~pDg~~~V-~Gs~dr~i~~wdlDgn-~~~~W~gvr~~~v~dlait~Dgk 367 (519)
T KOG0293|consen 291 EVLSLWDVDT-GDLRHLYPSGLGFSVSSCAWCPDGFRFV-TGSPDRTIIMWDLDGN-ILGNWEGVRDPKVHDLAITYDGK 367 (519)
T ss_pred HheeeccCCc-chhhhhcccCcCCCcceeEEccCCceeE-ecCCCCcEEEecCCcc-hhhcccccccceeEEEEEcCCCc
Confidence 9999999998 44444443 4568899999999987655 9999999999999743 333332 3467899999999
Q ss_pred EEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCc--eE
Q 003840 651 RYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNK--FH 727 (792)
Q Consensus 651 ~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~--i~ 727 (792)
++++.+.|..|++|+.++...+..+. ...+|++++++.|++++++.-.+ .|.+||+... +.+..+.+|... +.
T Consensus 368 ~vl~v~~d~~i~l~~~e~~~dr~lis-e~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~---~lv~kY~Ghkq~~fiI 443 (519)
T KOG0293|consen 368 YVLLVTVDKKIRLYNREARVDRGLIS-EEQPITSFSISKDGKLALVNLQDQEIHLWDLEEN---KLVRKYFGHKQGHFII 443 (519)
T ss_pred EEEEEecccceeeechhhhhhhcccc-ccCceeEEEEcCCCcEEEEEcccCeeEEeecchh---hHHHHhhcccccceEE
Confidence 99999999999999998876665444 45789999999999999988888 9999999743 666677776544 33
Q ss_pred EEEEe-CCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeC-CCCEEEEEeCCCcEEEeC
Q 003840 728 SCVFH-PTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVST-ETGYVASASHDKFVKLWK 792 (792)
Q Consensus 728 si~fs-pdg~~L~sgs~dg~I~IwDl~~~~~~-~~~~h~~~V~sl~fsp-dg~~LaSgs~DG~I~IWd 792 (792)
.-||. .+..+|++|+.|+.|+||+..+++++ .+.+|...|+|++|+| +-.++|+||+||+||||.
T Consensus 444 rSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg 511 (519)
T KOG0293|consen 444 RSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWG 511 (519)
T ss_pred EeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEec
Confidence 33444 45589999999999999999999988 7889999999999999 456899999999999994
No 21
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=8.4e-33 Score=290.69 Aligned_cols=274 Identities=23% Similarity=0.379 Sum_probs=251.0
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeE
Q 003840 512 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLR 591 (792)
Q Consensus 512 ~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~ 591 (792)
+..|+|++|+.+|.+||+|+.||.++||+. +|..+.+|..|.++|.+|.|+.+|.||++++.|+++.+||..+ +....
T Consensus 235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~-g~~~q 312 (524)
T KOG0273|consen 235 NKDVTSLDWNNDGTLLATGSEDGEARIWNK-DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHT-GTVKQ 312 (524)
T ss_pred cCCcceEEecCCCCeEEEeecCcEEEEEec-CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccC-ceEEE
Confidence 467999999999999999999999999995 5788899999999999999999999999999999999999987 67777
Q ss_pred EecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeC---CeeEEEEecCCCEEEEEEcCCeEEEEECCC
Q 003840 592 TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAAENVVSILDAET 668 (792)
Q Consensus 592 ~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~sp~~~~lla~s~dg~I~i~D~~t 668 (792)
.+.-|..+-.+|.|-.+. -|++++.|+.|+++.+.....+.++.+ .+.++.|.|.+..|++++.|++++||....
T Consensus 313 ~f~~~s~~~lDVdW~~~~--~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~ 390 (524)
T KOG0273|consen 313 QFEFHSAPALDVDWQSND--EFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQ 390 (524)
T ss_pred eeeeccCCccceEEecCc--eEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCC
Confidence 788888887889997654 477999999999999998888887754 578899999999999999999999999999
Q ss_pred CeEEEEecCCCCCeEEEEEcCCC---------CEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEE
Q 003840 669 QACRLSLQGHTKPIDSVCWDPSG---------ELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSL 738 (792)
Q Consensus 669 ~~~~~~l~~h~~~V~sv~~spdg---------~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L 738 (792)
..+...+.+|...|..+.|+|+| ..|++++.| +|++||+..+ .+++.+..|..+|++++|+|+|+|+
T Consensus 391 ~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~g---v~i~~f~kH~~pVysvafS~~g~yl 467 (524)
T KOG0273|consen 391 SNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESG---VPIHTLMKHQEPVYSVAFSPNGRYL 467 (524)
T ss_pred CcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCC---ceeEeeccCCCceEEEEecCCCcEE
Confidence 99999999999999999999964 478888888 9999999877 8999999999999999999999999
Q ss_pred EEEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003840 739 LVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 792 (792)
Q Consensus 739 ~sgs~dg~I~IwDl~~~~~~~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd 792 (792)
++|+.||.|+||+..+++++......+.|..++|+.+|.+|..+-.||.|++-|
T Consensus 468 AsGs~dg~V~iws~~~~~l~~s~~~~~~Ifel~Wn~~G~kl~~~~sd~~vcvld 521 (524)
T KOG0273|consen 468 ASGSLDGCVHIWSTKTGKLVKSYQGTGGIFELCWNAAGDKLGACASDGSVCVLD 521 (524)
T ss_pred EecCCCCeeEeccccchheeEeecCCCeEEEEEEcCCCCEEEEEecCCCceEEE
Confidence 999999999999999999998888888899999999999999999999998754
No 22
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=2.6e-32 Score=272.11 Aligned_cols=271 Identities=24% Similarity=0.431 Sum_probs=238.9
Q ss_pred cceEEEEeCCCeeeecCCC---eeEeCCCcchhhcccccccCCCCCCceeeeccCCCCCCCCCCCcceeccCCcceeeee
Q 003840 430 KPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEAN 506 (792)
Q Consensus 430 k~~l~~s~Dg~~~~ss~s~---~lWD~~tg~~~~~~~~~~~~g~~d~~v~~~l~~d~~~~~d~~~~~~d~~~~~~~~~~~ 506 (792)
...+.|++|.+.+++++.+ .|||.-+.. .+.
T Consensus 58 i~~~~ws~Dsr~ivSaSqDGklIvWDs~Ttn----------------------------------------------K~h 91 (343)
T KOG0286|consen 58 IYAMDWSTDSRRIVSASQDGKLIVWDSFTTN----------------------------------------------KVH 91 (343)
T ss_pred eeeeEecCCcCeEEeeccCCeEEEEEccccc----------------------------------------------cee
Confidence 4568899999998887766 668876543 223
Q ss_pred eeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC------ceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEE
Q 003840 507 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL------KSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV 580 (792)
Q Consensus 507 ~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~------~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~I 580 (792)
.+.-....|..++|+|.|+++|+|+-|+...||++.+. ...+.+.+|.+.+.|+.|.+| ..|+|++.|.++.+
T Consensus 92 aipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD-~~ilT~SGD~TCal 170 (343)
T KOG0286|consen 92 AIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD-NHILTGSGDMTCAL 170 (343)
T ss_pred EEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCC-CceEecCCCceEEE
Confidence 34445667999999999999999999999999999854 456678999999999999985 48999999999999
Q ss_pred EeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeC---CeeEEEEecCCCEEEEEEc
Q 003840 581 WDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAA 657 (792)
Q Consensus 581 Wdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~sp~~~~lla~s~ 657 (792)
||+++ +..+..|.+|.+.|.+|++.|...+.|++|+-|+..++||++.+.++..|.+ .++.++|.|++..+++|+.
T Consensus 171 WDie~-g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSD 249 (343)
T KOG0286|consen 171 WDIET-GQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSD 249 (343)
T ss_pred EEccc-ceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCC
Confidence 99998 7889999999999999999995566788999999999999999999999876 4678999999999999999
Q ss_pred CCeEEEEECCCCeEEEEecC--CCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCC
Q 003840 658 ENVVSILDAETQACRLSLQG--HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPT 734 (792)
Q Consensus 658 dg~I~i~D~~t~~~~~~l~~--h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspd 734 (792)
|++.++||++....+..+.. ...+|++++|+..|++|++|..| ++.+||.-.+ +.+..+.+|++.|.++..+||
T Consensus 250 D~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~---e~vg~L~GHeNRvScl~~s~D 326 (343)
T KOG0286|consen 250 DATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKG---ERVGVLAGHENRVSCLGVSPD 326 (343)
T ss_pred CceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeecccc---ceEEEeeccCCeeEEEEECCC
Confidence 99999999999887777763 34579999999999999999999 9999999766 778888999999999999999
Q ss_pred CCEEEEEEcCCeEEEEE
Q 003840 735 YPSLLVIGCYQSLELWN 751 (792)
Q Consensus 735 g~~L~sgs~dg~I~IwD 751 (792)
|..+++|+.|..|+||.
T Consensus 327 G~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 327 GMAVATGSWDSTLRIWA 343 (343)
T ss_pred CcEEEecchhHheeecC
Confidence 99999999999999994
No 23
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.4e-32 Score=302.47 Aligned_cols=347 Identities=19% Similarity=0.269 Sum_probs=284.2
Q ss_pred CCeeeecCCC---eeEeCCCcchhhcccccccCCCCCCceeeeccCCCCCCCCCCCcceeccCCcceeeeeeeecCCCCe
Q 003840 439 GAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKV 515 (792)
Q Consensus 439 g~~~~ss~s~---~lWD~~tg~~~~~~~~~~~~g~~d~~v~~~l~~d~~~~~d~~~~~~d~~~~~~~~~~~~l~~H~~~V 515 (792)
|.++++.+.. ++||.+.++.+..-.... ..+++.... .........-......-+.+..+++..+.+-|.++.|
T Consensus 250 ~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~-~~e~~~~~~--~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI 326 (775)
T KOG0319|consen 250 GEYIITAGGSGVVQYWDSESGKCVYKQRQSD-SEEIDHLLA--IESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEI 326 (775)
T ss_pred ceEEEEecCCceEEEEecccchhhhhhccCC-chhhhccee--ccccCceEEEEccceEEEEEccccEEehhhcCCchhh
Confidence 5577665544 889999987665433321 111111100 0000000000011112222344566778888999999
Q ss_pred EEEEEc-CCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCC---ceeE
Q 003840 516 ICCHFS-SDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG---YSLR 591 (792)
Q Consensus 516 ~~lafs-pdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~---~~i~ 591 (792)
.+++|- |+.++||++++.+.+++|++.+..+. .+.+|.+.|.++....+|.+|++|+.|.+|++|.++++. .++.
T Consensus 327 ~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a 405 (775)
T KOG0319|consen 327 LDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVA 405 (775)
T ss_pred eeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhh
Confidence 999975 57789999999999999999887776 889999999999966677899999999999999885422 3455
Q ss_pred EecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeE------------EEeeCCeeEEEEecCCCEEEEEEcCC
Q 003840 592 TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT------------RVFKGGTAQMRFQPHLGRYLAAAAEN 659 (792)
Q Consensus 592 ~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~------------~~~~~~~~~v~~sp~~~~lla~s~dg 659 (792)
...+|...|.+++++..+..+|++++.|++|++|++...+.. +.+...+++++++|+++.+++|+.|.
T Consensus 406 ~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDk 485 (775)
T KOG0319|consen 406 QANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDK 485 (775)
T ss_pred hhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEeccccc
Confidence 677999999999999999999999999999999999873211 12345789999999999999999999
Q ss_pred eEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEE
Q 003840 660 VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSL 738 (792)
Q Consensus 660 ~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L 738 (792)
+.+||+++......++.+|...|+||.|++....+++++.| +|+||.+.++ .|+.++.+|...|..+.|-.+++.|
T Consensus 486 taKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~f---SClkT~eGH~~aVlra~F~~~~~ql 562 (775)
T KOG0319|consen 486 TAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTF---SCLKTFEGHTSAVLRASFIRNGKQL 562 (775)
T ss_pred ceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccc---eeeeeecCccceeEeeeeeeCCcEE
Confidence 99999999999999999999999999999999999999999 9999999776 8999999999999999999999999
Q ss_pred EEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003840 739 LVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 792 (792)
Q Consensus 739 ~sgs~dg~I~IwDl~~~~~~-~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd 792 (792)
++++.||-|++|+++++++. ++..|++.|++++.++...+++||+.||.|.+|+
T Consensus 563 iS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wk 617 (775)
T KOG0319|consen 563 ISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWK 617 (775)
T ss_pred EeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEee
Confidence 99999999999999999998 8999999999999999999999999999999995
No 24
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.2e-32 Score=273.30 Aligned_cols=245 Identities=20% Similarity=0.335 Sum_probs=215.2
Q ss_pred eeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEe
Q 003840 503 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 582 (792)
Q Consensus 503 ~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWd 582 (792)
..++.++||...|..++.++||++.++++.|+++++||+.+++....|.+|...|.+++|++|.+.|++|+.|.+|++|+
T Consensus 54 ~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwn 133 (315)
T KOG0279|consen 54 VPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWN 133 (315)
T ss_pred ceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeee
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceeEEecc--cCCCeEEEEEcCCC-CeEEEEEeCCCcEEEEEcCCCeeEEEeeC---CeeEEEEecCCCEEEEEE
Q 003840 583 ADNPGYSLRTFMG--HSASVMSLDFHPNK-DDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAA 656 (792)
Q Consensus 583 l~s~~~~i~~~~~--h~~~V~sl~fspd~-~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~sp~~~~lla~s 656 (792)
+-. .+..++.. +.+.|.|++|+|+. +-+|++++.|++|++||+++.+....|.+ .++.+.++|||..+++|+
T Consensus 134 t~g--~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGg 211 (315)
T KOG0279|consen 134 TLG--VCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGG 211 (315)
T ss_pred ecc--cEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCC
Confidence 975 34444433 37899999999985 56788999999999999999888877754 467799999999999999
Q ss_pred cCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEee---------cCCCceE
Q 003840 657 AENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELS---------CNGNKFH 727 (792)
Q Consensus 657 ~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d~I~IwDl~s~~~~~~i~~~~---------~~~~~i~ 727 (792)
.||.+.+||++.++.++.+. |...|.+++|+|+...|+.+....|+|||+.+.. ++.++. .......
T Consensus 212 kdg~~~LwdL~~~k~lysl~-a~~~v~sl~fspnrywL~~at~~sIkIwdl~~~~---~v~~l~~d~~g~s~~~~~~~cl 287 (315)
T KOG0279|consen 212 KDGEAMLWDLNEGKNLYSLE-AFDIVNSLCFSPNRYWLCAATATSIKIWDLESKA---VVEELKLDGIGPSSKAGDPICL 287 (315)
T ss_pred CCceEEEEEccCCceeEecc-CCCeEeeEEecCCceeEeeccCCceEEEeccchh---hhhhccccccccccccCCcEEE
Confidence 99999999999999988776 7889999999999888888777799999998873 332222 1234467
Q ss_pred EEEEeCCCCEEEEEEcCCeEEEEECC
Q 003840 728 SCVFHPTYPSLLVIGCYQSLELWNMS 753 (792)
Q Consensus 728 si~fspdg~~L~sgs~dg~I~IwDl~ 753 (792)
+++|++||..|++|..|+.|++|.+.
T Consensus 288 slaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 288 SLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred EEEEcCCCcEEEeeecCCcEEEEEee
Confidence 88999999999999999999999875
No 25
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1.1e-32 Score=306.65 Aligned_cols=274 Identities=24% Similarity=0.415 Sum_probs=239.6
Q ss_pred eeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC-------------------------------ceeEEecc
Q 003840 504 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL-------------------------------KSKTNLEE 552 (792)
Q Consensus 504 ~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~-------------------------------~~~~~l~~ 552 (792)
++.++......|+|+.|++|+.+||.|..|..|++|.+... ...+++.+
T Consensus 370 c~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~G 449 (707)
T KOG0263|consen 370 CMYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYG 449 (707)
T ss_pred EEEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeec
Confidence 44455556677999999999999999999999999987621 12345678
Q ss_pred CCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCee
Q 003840 553 HSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC 632 (792)
Q Consensus 553 h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~ 632 (792)
|.++|..+.|+|+.++|++++.|++||+|.+++ ..++..+.+|..+|+++.|+|.| ++|+|++.|++-++|.......
T Consensus 450 H~GPVyg~sFsPd~rfLlScSED~svRLWsl~t-~s~~V~y~GH~~PVwdV~F~P~G-yYFatas~D~tArLWs~d~~~P 527 (707)
T KOG0263|consen 450 HSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDT-WSCLVIYKGHLAPVWDVQFAPRG-YYFATASHDQTARLWSTDHNKP 527 (707)
T ss_pred CCCceeeeeecccccceeeccCCcceeeeeccc-ceeEEEecCCCcceeeEEecCCc-eEEEecCCCceeeeeecccCCc
Confidence 999999999999999999999999999999998 77888899999999999999985 6888999999999999999888
Q ss_pred EEEeeC---CeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECC
Q 003840 633 TRVFKG---GTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVG 708 (792)
Q Consensus 633 ~~~~~~---~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~ 708 (792)
.+.|.+ .+.|+.|+|+..++++|+.|.+|++||+.++..++.|.+|.++|.+++|+|+|++|++|++| .|+|||+.
T Consensus 528 lRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~ 607 (707)
T KOG0263|consen 528 LRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLA 607 (707)
T ss_pred hhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcC
Confidence 888865 46789999999999999999999999999999999999999999999999999999999999 99999998
Q ss_pred CCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-------------------------EEccc
Q 003840 709 SGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-------------------------TLTAH 763 (792)
Q Consensus 709 s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~-------------------------~~~~h 763 (792)
++ ..+..+.+|.+.|.++.|+.+|..|++++.|.+|++||+...... .+...
T Consensus 608 ~~---~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llgs~~tK 684 (707)
T KOG0263|consen 608 NG---SLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIELLNLGHISTSNSAITQENNASSLLLGSFYTK 684 (707)
T ss_pred CC---cchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhcccccccccccccccccccCCCCcceeeeeeec
Confidence 87 777888889999999999999999999999999999998642211 33334
Q ss_pred CCCeEEEEEeCCCCEEEEE
Q 003840 764 EGLIAALAVSTETGYVASA 782 (792)
Q Consensus 764 ~~~V~sl~fspdg~~LaSg 782 (792)
..+|.++.|...+-.|++|
T Consensus 685 ~tpv~~l~FtrrNl~L~~g 703 (707)
T KOG0263|consen 685 NTPVVGLHFTRRNLLLAVG 703 (707)
T ss_pred CceEEEEEEeccceeEEec
Confidence 5578888887766445544
No 26
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=8.1e-32 Score=275.82 Aligned_cols=282 Identities=19% Similarity=0.264 Sum_probs=248.6
Q ss_pred eeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeC
Q 003840 504 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDA 583 (792)
Q Consensus 504 ~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl 583 (792)
....+.+|++.|+|+.|+.||.+||||+.+|.|+||+..++.....+......|.-+.|+|.+..|++|+.||.|.+|.+
T Consensus 98 ~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~i 177 (399)
T KOG0296|consen 98 FAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQI 177 (399)
T ss_pred ceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEEC
Confidence 34567899999999999999999999999999999999999999998877888999999999999999999999999999
Q ss_pred CCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee----CCeeEEEEecCCCEEEEEEcCC
Q 003840 584 DNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK----GGTAQMRFQPHLGRYLAAAAEN 659 (792)
Q Consensus 584 ~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~----~~~~~v~~sp~~~~lla~s~dg 659 (792)
.+ ....+.+.+|..++++-.|.|+|++++ ++..||+|++||+.++..+..+. ....++.++..+..++.+..++
T Consensus 178 p~-~~~~kv~~Gh~~~ct~G~f~pdGKr~~-tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~ 255 (399)
T KOG0296|consen 178 PS-QALCKVMSGHNSPCTCGEFIPDGKRIL-TGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEG 255 (399)
T ss_pred CC-cceeeEecCCCCCcccccccCCCceEE-EEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCc
Confidence 98 477889999999999999999988655 99999999999999999888776 2456788888888999999999
Q ss_pred eEEEEECCCCeEEEEec--------CCCCCeEEEEEcC---CCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceE
Q 003840 660 VVSILDAETQACRLSLQ--------GHTKPIDSVCWDP---SGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFH 727 (792)
Q Consensus 660 ~I~i~D~~t~~~~~~l~--------~h~~~V~sv~~sp---dg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~ 727 (792)
.+++....+++.+.... .++..+.||.+.| .=.+.|+|+-| +|.|||+... .++..-.|...|.
T Consensus 256 ~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~----~~R~~c~he~~V~ 331 (399)
T KOG0296|consen 256 VACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAS----TLRHICEHEDGVT 331 (399)
T ss_pred cEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccc----hhheeccCCCceE
Confidence 99999999999888776 3444555555554 55688899988 9999999764 3344445777899
Q ss_pred EEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003840 728 SCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 792 (792)
Q Consensus 728 si~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd 792 (792)
.+.|-+ ..+|++++.+|.|++||.++|.++ .+.+|...|.+++++|+.++|+|+|.|++.+||+
T Consensus 332 ~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~ 396 (399)
T KOG0296|consen 332 KLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFE 396 (399)
T ss_pred EEEEcC-cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEe
Confidence 999999 789999999999999999999988 7889999999999999999999999999999985
No 27
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.7e-32 Score=300.19 Aligned_cols=353 Identities=19% Similarity=0.295 Sum_probs=282.1
Q ss_pred cceEEEEeCCCeeeecCCC---eeEeCCCcchhhcccccccCCCCCCceeeeccCC---CCCCCCCCCcceeccCCccee
Q 003840 430 KPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHD---DTDPRDAGGRGMDVSQGFSFK 503 (792)
Q Consensus 430 k~~l~~s~Dg~~~~ss~s~---~lWD~~tg~~~~~~~~~~~~g~~d~~v~~~l~~d---~~~~~d~~~~~~d~~~~~~~~ 503 (792)
...++.+||+.++++.... ++|++.++++++.+... ++.......|-... .+++.|+..++||+..++
T Consensus 65 ita~~l~~d~~~L~~a~rs~llrv~~L~tgk~irswKa~---He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~--- 138 (775)
T KOG0319|consen 65 ITALALTPDEEVLVTASRSQLLRVWSLPTGKLIRSWKAI---HEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGY--- 138 (775)
T ss_pred hheeeecCCccEEEEeeccceEEEEEcccchHhHhHhhc---cCCCeEEEEEcCCCceEEeccccceEEEEEeeCCE---
Confidence 3457788899998886665 88999999887766532 21222222221111 156678888999998875
Q ss_pred eeeeeecCCCCeEEEEEcCCCC--EEEEEeCCCeEEEEECCCCc-eeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEE
Q 003840 504 EANSVRASTSKVICCHFSSDGK--LLATGGHDKKAVLWHTDTLK-SKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV 580 (792)
Q Consensus 504 ~~~~l~~H~~~V~~lafspdg~--~Lasgs~Dg~I~vWdl~t~~-~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~I 580 (792)
....|+||.+.|.++.|.|+-+ .|++|..|+.|++||+.+.. ++.++..|...|++++|++|+..+++++.|..|.|
T Consensus 139 ~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~v 218 (775)
T KOG0319|consen 139 CTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIV 218 (775)
T ss_pred EEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEE
Confidence 7889999999999999999765 58999999999999998554 48888899999999999999999999999999999
Q ss_pred EeCCCCC-----------------------c--e----------------------------------------------
Q 003840 581 WDADNPG-----------------------Y--S---------------------------------------------- 589 (792)
Q Consensus 581 Wdl~s~~-----------------------~--~---------------------------------------------- 589 (792)
||+..-. + .
T Consensus 219 wd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~ 298 (775)
T KOG0319|consen 219 WDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLL 298 (775)
T ss_pred eehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEE
Confidence 9884100 0 0
Q ss_pred -----------------------------------------------------------eEEecccCCCeEEEEEcCCCC
Q 003840 590 -----------------------------------------------------------LRTFMGHSASVMSLDFHPNKD 610 (792)
Q Consensus 590 -----------------------------------------------------------i~~~~~h~~~V~sl~fspd~~ 610 (792)
...+.+|...|.+++...+|
T Consensus 299 vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g- 377 (775)
T KOG0319|consen 299 VTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSG- 377 (775)
T ss_pred EEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccC-
Confidence 11223677777777744444
Q ss_pred eEEEEEeCCCcEEEEEcCCCeeE----EE---eeCCeeEEEEecCCC-EEEEEEcCCeEEEEECCCCe-----EE----E
Q 003840 611 DLICSCDGDGEIRYWSINNGSCT----RV---FKGGTAQMRFQPHLG-RYLAAAAENVVSILDAETQA-----CR----L 673 (792)
Q Consensus 611 ~ll~sgs~Dg~I~iwdl~~~~~~----~~---~~~~~~~v~~sp~~~-~lla~s~dg~I~i~D~~t~~-----~~----~ 673 (792)
.+|++|+.|.++++|.++++... .. +...+.+++++..+. .|++++.|.+|++|++...+ .+ .
T Consensus 378 ~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~ 457 (775)
T KOG0319|consen 378 DLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRY 457 (775)
T ss_pred cEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhH
Confidence 58889999999999988544322 22 234566677766554 56778889999999997622 11 2
Q ss_pred EecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 003840 674 SLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNM 752 (792)
Q Consensus 674 ~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl 752 (792)
+...|...|+|++++|+.++|++|+.| +.+||++... .....+.+|...++++.|++....+++++.|++|+||.+
T Consensus 458 t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~---~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~i 534 (775)
T KOG0319|consen 458 TERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQL---RLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSI 534 (775)
T ss_pred HHHhhcccccceEecCCCceEEecccccceeeecccCc---eEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEe
Confidence 345699999999999999999999999 9999999744 888999999999999999999999999999999999999
Q ss_pred CCCcEE-EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003840 753 SENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 792 (792)
Q Consensus 753 ~~~~~~-~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd 792 (792)
.+..++ ++.+|+..|..+.|-.+++.|++|+.||.|+||+
T Consensus 535 s~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWn 575 (775)
T KOG0319|consen 535 STFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWN 575 (775)
T ss_pred ccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEe
Confidence 999998 8889999999999999999999999999999996
No 28
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4.5e-31 Score=290.48 Aligned_cols=358 Identities=19% Similarity=0.310 Sum_probs=295.9
Q ss_pred CcceEEEEeCCCeeeecCCC--eeEeCCCcchhhcccccc----cCCCCCCceeeeccCCC----CCCCCCCCcceeccC
Q 003840 429 SKPLMMFGTDGAGTLTSPSN--QLWDDKDLELRADMDRLV----EDGSLDDNVESFLSHDD----TDPRDAGGRGMDVSQ 498 (792)
Q Consensus 429 ~k~~l~~s~Dg~~~~ss~s~--~lWD~~tg~~~~~~~~~~----~~g~~d~~v~~~l~~d~----~~~~d~~~~~~d~~~ 498 (792)
....+.|||||+..+.+..+ .||-....... .+..|. -.|..++.+..-++.|. .+.+|...+++.+..
T Consensus 98 ~v~~i~fSPng~~fav~~gn~lqiw~~P~~~~~-~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~ 176 (893)
T KOG0291|consen 98 GVGAIKFSPNGKFFAVGCGNLLQIWHAPGEIKN-EFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDG 176 (893)
T ss_pred ccceEEECCCCcEEEEEecceeEEEecCcchhc-ccCcceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEecc
Confidence 35579999999998887777 78976543321 222222 24556665555455554 456788888888776
Q ss_pred CcceeeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC-----------------------Cce---------
Q 003840 499 GFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT-----------------------LKS--------- 546 (792)
Q Consensus 499 ~~~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t-----------------------~~~--------- 546 (792)
... -....+.+|.+.|.++-|..+...|++.+.||.|.+|.... ++.
T Consensus 177 ~k~-~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k 255 (893)
T KOG0291|consen 177 NKN-LFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYK 255 (893)
T ss_pred ccc-cceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEE
Confidence 554 34567889999999999999999999999999999997650 111
Q ss_pred --eEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEE
Q 003840 547 --KTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRY 624 (792)
Q Consensus 547 --~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~i 624 (792)
+..+......|++.+|++..+.||+|-..|...+|++.. -..+..+.-....|..++|+..|+.+.+.|+.-|.+.|
T Consensus 256 ~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~-f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlV 334 (893)
T KOG0291|consen 256 TKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPD-FNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLV 334 (893)
T ss_pred EEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCC-ceEEEEeecccceeeEEEecccCCEEEEcCCccceEEE
Confidence 011122347899999999999999999999999999986 66777777777899999999999988877888899999
Q ss_pred EEcCCCeeEEEee---CCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-
Q 003840 625 WSINNGSCTRVFK---GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED- 700 (792)
Q Consensus 625 wdl~~~~~~~~~~---~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d- 700 (792)
|++.+...+.... ..+.+++++||+..+++|+.||.|+|||...+-|..+|..|+..|+.++|+..|+.|++.+-|
T Consensus 335 weWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDG 414 (893)
T KOG0291|consen 335 WEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDG 414 (893)
T ss_pred EEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCC
Confidence 9999887766554 457889999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEECCCCCCcceEEEeecCC-CceEEEEEeCCCCEEEEEEcCC-eEEEEECCCCcEE-EEcccCCCeEEEEEeCCCC
Q 003840 701 SVRVWTVGSGSEGECVHELSCNG-NKFHSCVFHPTYPSLLVIGCYQ-SLELWNMSENKTM-TLTAHEGLIAALAVSTETG 777 (792)
Q Consensus 701 ~I~IwDl~s~~~~~~i~~~~~~~-~~i~si~fspdg~~L~sgs~dg-~I~IwDl~~~~~~-~~~~h~~~V~sl~fspdg~ 777 (792)
+|+.||+... +..+++.... ..+.+++..|.|..+++|+.|. .|+||++.+|+++ .+.+|+++|.+++|+|++.
T Consensus 415 tVRAwDlkRY---rNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~ 491 (893)
T KOG0291|consen 415 TVRAWDLKRY---RNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGS 491 (893)
T ss_pred eEEeeeeccc---ceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccC
Confidence 9999999766 6667766543 3478889999999999999887 8999999999999 7889999999999999999
Q ss_pred EEEEEeCCCcEEEeC
Q 003840 778 YVASASHDKFVKLWK 792 (792)
Q Consensus 778 ~LaSgs~DG~I~IWd 792 (792)
.||++++|.+||+||
T Consensus 492 ~LaS~SWDkTVRiW~ 506 (893)
T KOG0291|consen 492 LLASGSWDKTVRIWD 506 (893)
T ss_pred eEEeccccceEEEEE
Confidence 999999999999996
No 29
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=3.1e-31 Score=322.54 Aligned_cols=282 Identities=18% Similarity=0.305 Sum_probs=238.4
Q ss_pred eecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC----c----eeEEeccCCCCEEEEEECC-CCCeEEEEeCCCcE
Q 003840 508 VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL----K----SKTNLEEHSSLITDVRFSP-SMPRLATSSFDKTV 578 (792)
Q Consensus 508 l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~----~----~~~~l~~h~~~V~~i~fsp-dg~~Lasgs~Dg~V 578 (792)
+..|.+.|++++|+++|++||+|+.|+.|+|||+... . ....+. +...|.+++|++ ++.+|++++.||+|
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v 557 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVV 557 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeE
Confidence 4569999999999999999999999999999997542 1 122233 356799999987 47799999999999
Q ss_pred EEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeC--CeeEEEEe-cCCCEEEEE
Q 003840 579 RVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG--GTAQMRFQ-PHLGRYLAA 655 (792)
Q Consensus 579 ~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~--~~~~v~~s-p~~~~lla~ 655 (792)
+|||+.+ +..+..+.+|...|++++|+|.+..+|++|+.||+|++||++++.++..+.. .+.++.|. +++..++++
T Consensus 558 ~lWd~~~-~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latg 636 (793)
T PLN00181 558 QVWDVAR-SQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFG 636 (793)
T ss_pred EEEECCC-CeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEE
Confidence 9999987 6778888999999999999986566788999999999999999988877654 45667775 467888999
Q ss_pred EcCCeEEEEECCCCe-EEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCC---CcceEEEeecCCCceEEEE
Q 003840 656 AAENVVSILDAETQA-CRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGS---EGECVHELSCNGNKFHSCV 730 (792)
Q Consensus 656 s~dg~I~i~D~~t~~-~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~---~~~~i~~~~~~~~~i~si~ 730 (792)
+.|+.|++||+++.+ .+..+.+|...|.++.|. ++.+|++++.| .|+|||++... ...++..+.+|...+..++
T Consensus 637 s~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~ 715 (793)
T PLN00181 637 SADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVG 715 (793)
T ss_pred eCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEE
Confidence 999999999998875 567788999999999997 78889999988 99999997532 2356788889999999999
Q ss_pred EeCCCCEEEEEEcCCeEEEEECCCCcEE--------------EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003840 731 FHPTYPSLLVIGCYQSLELWNMSENKTM--------------TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 792 (792)
Q Consensus 731 fspdg~~L~sgs~dg~I~IwDl~~~~~~--------------~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd 792 (792)
|++++.+|++|+.|+.|++|+......+ ....|...|.+++|++++.+|++|+.||.|+||+
T Consensus 716 ~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~ 791 (793)
T PLN00181 716 LSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILE 791 (793)
T ss_pred EcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEe
Confidence 9999999999999999999998655322 1123556799999999999999999999999996
No 30
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.7e-31 Score=293.54 Aligned_cols=347 Identities=18% Similarity=0.278 Sum_probs=276.6
Q ss_pred EeCCCeeeecCCC--eeEeCCCcchhhcccccccCCCCCCceeeeccCCCC-----CCCCCCCcceeccCCcceeeeeee
Q 003840 436 GTDGAGTLTSPSN--QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDT-----DPRDAGGRGMDVSQGFSFKEANSV 508 (792)
Q Consensus 436 s~Dg~~~~ss~s~--~lWD~~tg~~~~~~~~~~~~g~~d~~v~~~l~~d~~-----~~~d~~~~~~d~~~~~~~~~~~~l 508 (792)
+..|.+++.+... .+||+++|+....+...... ..+.+....++. ++.|+.+++|+...+ ....++
T Consensus 31 ~~~Gr~va~~a~E~vn~WdlRtge~~~~l~~~~~k----~evt~l~~~~d~l~lAVGYaDGsVqif~~~s~---~~~~tf 103 (888)
T KOG0306|consen 31 SGKGRAVAVSALEQVNIWDLRTGEIEKKLILLKKK----AEVTCLRSSDDILLLAVGYADGSVQIFSLESE---EILITF 103 (888)
T ss_pred cCCCcEEEEeccccEeEEeeecchhhhhhhhhccc----ceEEEeeccCCcceEEEEecCceEEeeccCCC---ceeeee
Confidence 3347777663333 77999999776655532221 234444554443 468888999988765 577889
Q ss_pred ecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCc
Q 003840 509 RASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGY 588 (792)
Q Consensus 509 ~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~ 588 (792)
.+|...|+++.|+..|.+||+|+.|+.|.|||+-...-...+.+|.+.|+..-|..+.++|++.|.|+.|++||+++...
T Consensus 104 ngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhC 183 (888)
T KOG0306|consen 104 NGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQHC 183 (888)
T ss_pred cccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEEeecchHHHhHHhccCCCeEEEEeccCceEEEEeccccee
Confidence 99999999999999999999999999999999988777888888888888877777677777777777777777752100
Q ss_pred ---------------------------------------------------------------e----------------
Q 003840 589 ---------------------------------------------------------------S---------------- 589 (792)
Q Consensus 589 ---------------------------------------------------------------~---------------- 589 (792)
.
T Consensus 184 f~Thvd~r~Eiw~l~~~~~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g 263 (888)
T KOG0306|consen 184 FETHVDHRGEIWALVLDEKLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQG 263 (888)
T ss_pred eeEEecccceEEEEEEecceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEec
Confidence 0
Q ss_pred --------------------------------------------------------------------------------
Q 003840 590 -------------------------------------------------------------------------------- 589 (792)
Q Consensus 590 -------------------------------------------------------------------------------- 589 (792)
T Consensus 264 ~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~n 343 (888)
T KOG0306|consen 264 ADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLAN 343 (888)
T ss_pred chhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeec
Confidence
Q ss_pred ----------------------eEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCC-eeEEEEe
Q 003840 590 ----------------------LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG-TAQMRFQ 646 (792)
Q Consensus 590 ----------------------i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~-~~~v~~s 646 (792)
...+.+|...|.+++|+.+. .++ ..+..+.|++|+..+.+|++++... +.+..|.
T Consensus 344 Ntv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~-~~~-~Sga~~SikiWn~~t~kciRTi~~~y~l~~~Fv 421 (888)
T KOG0306|consen 344 NTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDS-ILL-ASGAGESIKIWNRDTLKCIRTITCGYILASKFV 421 (888)
T ss_pred CceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCc-eee-eecCCCcEEEEEccCcceeEEeccccEEEEEec
Confidence 01122566778888887663 344 3445789999999999999998764 5678899
Q ss_pred cCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCC-----cceEE---
Q 003840 647 PHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSE-----GECVH--- 717 (792)
Q Consensus 647 p~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~-----~~~i~--- 717 (792)
|.+.++++|...|.+.+||+.....+.++.+|++.|++++.+||++.+++++.| +|++||+.-... .+.+.
T Consensus 422 pgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~ 501 (888)
T KOG0306|consen 422 PGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKH 501 (888)
T ss_pred CCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeecc
Confidence 999999999999999999999999999999999999999999999999999999 999999843211 11111
Q ss_pred -EeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEe
Q 003840 718 -ELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLW 791 (792)
Q Consensus 718 -~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IW 791 (792)
..-.-...|.++.++||+++|+++--|.+|+||-+++.+.. .+.+|.-+|.||.++||+++|+|||.|.+|+||
T Consensus 502 ~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiW 577 (888)
T KOG0306|consen 502 TRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIW 577 (888)
T ss_pred ceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEe
Confidence 11123467999999999999999999999999999998876 899999999999999999999999999999999
No 31
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=4.8e-32 Score=301.65 Aligned_cols=264 Identities=28% Similarity=0.460 Sum_probs=222.3
Q ss_pred cceEEEEeCCCeeeec---CCCeeEeCCCcchhhcccccccCCCCCCceeeeccCCCCCCCCCCCcceeccCCcceeeee
Q 003840 430 KPLMMFGTDGAGTLTS---PSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEAN 506 (792)
Q Consensus 430 k~~l~~s~Dg~~~~ss---~s~~lWD~~tg~~~~~~~~~~~~g~~d~~v~~~l~~d~~~~~d~~~~~~d~~~~~~~~~~~ 506 (792)
..+.-|++|+..++.+ +.+++|.+...+++..-+ ..++..-++...|......|... -...+
T Consensus 381 v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~------------~~~l~~~d~~sad~~~~~~D~~~---~~~~~ 445 (707)
T KOG0263|consen 381 VTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKD------------ASDLSNIDTESADVDVDMLDDDS---SGTSR 445 (707)
T ss_pred ceeEeecCCcchhhccccccEEEEEecchhhhccccc------------hhhhccccccccchhhhhccccC---CceeE
Confidence 3456778888866554 334889887544322111 11222222333333333333322 23556
Q ss_pred eeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCC
Q 003840 507 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP 586 (792)
Q Consensus 507 ~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~ 586 (792)
++.||.++|+.+.|+|+.++|++++.|++|++|.+.+..++..+++|..+|+++.|+|.|-||||++.|++.++|..+.
T Consensus 446 ~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~- 524 (707)
T KOG0263|consen 446 TLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDH- 524 (707)
T ss_pred EeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeeccc-
Confidence 6999999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeC---CeeEEEEecCCCEEEEEEcCCeEEE
Q 003840 587 GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAAENVVSI 663 (792)
Q Consensus 587 ~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~sp~~~~lla~s~dg~I~i 663 (792)
..+++.+.+|-+.|.|+.|||+.. ++++|+.|.+||+||+.+|..++.|.+ .+.+++|+|+|.+|++|+.|+.|.+
T Consensus 525 ~~PlRifaghlsDV~cv~FHPNs~-Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~i 603 (707)
T KOG0263|consen 525 NKPLRIFAGHLSDVDCVSFHPNSN-YVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKI 603 (707)
T ss_pred CCchhhhcccccccceEEECCccc-ccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEE
Confidence 789999999999999999999965 677999999999999999999999976 5678999999999999999999999
Q ss_pred EECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCC
Q 003840 664 LDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSG 710 (792)
Q Consensus 664 ~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~ 710 (792)
||+.+++.+..+.+|++.|.+|.|+.+|.+||+++.| .|++||+...
T Consensus 604 WDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 604 WDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred EEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 9999999999999999999999999999999999999 9999998653
No 32
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.7e-32 Score=283.98 Aligned_cols=275 Identities=25% Similarity=0.449 Sum_probs=232.4
Q ss_pred CcceEEEEeCCCeeeecCCC---eeEeCCCcchhhcccccccCCCCCCceeeeccCCCCCCCCCCCcceeccCCcceeee
Q 003840 429 SKPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEA 505 (792)
Q Consensus 429 ~k~~l~~s~Dg~~~~ss~s~---~lWD~~tg~~~~~~~~~~~~g~~d~~v~~~l~~d~~~~~d~~~~~~d~~~~~~~~~~ 505 (792)
....+.|.|+|+.+++++.- .||+.. .|..-
T Consensus 98 ~V~~v~WtPeGRRLltgs~SGEFtLWNg~----------------------------------------------~fnFE 131 (464)
T KOG0284|consen 98 PVNVVRWTPEGRRLLTGSQSGEFTLWNGT----------------------------------------------SFNFE 131 (464)
T ss_pred ceeeEEEcCCCceeEeecccccEEEecCc----------------------------------------------eeeHH
Confidence 46789999999998885433 666542 22333
Q ss_pred eeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCC
Q 003840 506 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN 585 (792)
Q Consensus 506 ~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s 585 (792)
..+.+|...|+++.|+++|.++++|+.+|.|++|+..-.........|...|++++|+|+...|++++.||+|+|||...
T Consensus 132 tilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~ 211 (464)
T KOG0284|consen 132 TILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRM 211 (464)
T ss_pred HHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccC
Confidence 45679999999999999999999999999999999764443333344559999999999999999999999999999987
Q ss_pred CCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEe---eCCeeEEEEecCCCEEEEEEcCCeEE
Q 003840 586 PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF---KGGTAQMRFQPHLGRYLAAAAENVVS 662 (792)
Q Consensus 586 ~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~---~~~~~~v~~sp~~~~lla~s~dg~I~ 662 (792)
.+..+.+.+|.-.|.+++|+|.. .+|+++++|..|++||.+++.|+.++ +..+..+.|.+++++|++++.|..++
T Consensus 212 -~kee~vL~GHgwdVksvdWHP~k-gLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~k 289 (464)
T KOG0284|consen 212 -PKEERVLRGHGWDVKSVDWHPTK-GLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCK 289 (464)
T ss_pred -CchhheeccCCCCcceeccCCcc-ceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEE
Confidence 55667779999999999999985 58889999999999999999998765 45567789999999999999999999
Q ss_pred EEECCCCeEEEEecCCCCCeEEEEEcC-CCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEE
Q 003840 663 ILDAETQACRLSLQGHTKPIDSVCWDP-SGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLV 740 (792)
Q Consensus 663 i~D~~t~~~~~~l~~h~~~V~sv~~sp-dg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~s 740 (792)
+||+++.+.++++.+|+..|+++.|+| ...+|++|+.| .|..|.+...+ .....-..|...|++++|+|-|..|++
T Consensus 290 v~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~--p~~~i~~AHd~~iwsl~~hPlGhil~t 367 (464)
T KOG0284|consen 290 VFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEE--PLGEIPPAHDGEIWSLAYHPLGHILAT 367 (464)
T ss_pred EEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccc--cccCCCcccccceeeeeccccceeEee
Confidence 999999999999999999999999999 45578888888 99999987332 222233468889999999999999999
Q ss_pred EEcCCeEEEEECC
Q 003840 741 IGCYQSLELWNMS 753 (792)
Q Consensus 741 gs~dg~I~IwDl~ 753 (792)
|+.|.++++|.-.
T Consensus 368 gsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 368 GSNDRTVRFWTRN 380 (464)
T ss_pred cCCCcceeeeccC
Confidence 9999999999653
No 33
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.98 E-value=3.1e-32 Score=276.06 Aligned_cols=269 Identities=22% Similarity=0.462 Sum_probs=232.2
Q ss_pred eeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCC
Q 003840 505 ANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDAD 584 (792)
Q Consensus 505 ~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~ 584 (792)
+..-......|+|+.+..+ .+++|..|++|+|||..+..+++.+.+|++.|.|+.|. .+.|++|+.|.+|+|||++
T Consensus 190 inc~Se~skgVYClQYDD~--kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~ 265 (499)
T KOG0281|consen 190 INCRSENSKGVYCLQYDDE--KIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVN 265 (499)
T ss_pred ecCCcccCCceEEEEecch--hhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEecc
Confidence 3333456678999998654 89999999999999999999999999999999999995 5599999999999999999
Q ss_pred CCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeE---EEeeC---CeeEEEEecCCCEEEEEEcC
Q 003840 585 NPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT---RVFKG---GTAQMRFQPHLGRYLAAAAE 658 (792)
Q Consensus 585 s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~---~~~~~---~~~~v~~sp~~~~lla~s~d 658 (792)
+ ++++.++.+|...|..+.|+ +.++++|+.|.+|.+||+.....+ +.+.+ .++.+.|+ .+++++++.|
T Consensus 266 t-ge~l~tlihHceaVLhlrf~---ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgD 339 (499)
T KOG0281|consen 266 T-GEPLNTLIHHCEAVLHLRFS---NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGD 339 (499)
T ss_pred C-CchhhHHhhhcceeEEEEEe---CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCC
Confidence 8 88999999999999999998 347889999999999999875422 23333 34445554 4589999999
Q ss_pred CeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCE
Q 003840 659 NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPS 737 (792)
Q Consensus 659 g~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~ 737 (792)
.+|++|++.+++++.++.+|...|-|+.+ .|+++++|+.| +|++||+..| .+++.+.+|+.-|.++.| |.+.
T Consensus 340 RTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G---~cLRvLeGHEeLvRciRF--d~kr 412 (499)
T KOG0281|consen 340 RTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECG---ACLRVLEGHEELVRCIRF--DNKR 412 (499)
T ss_pred ceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEecccc---HHHHHHhchHHhhhheee--cCce
Confidence 99999999999999999999999988875 58999999999 9999999887 899999999999999999 5567
Q ss_pred EEEEEcCCeEEEEECCCCcE----------EEEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003840 738 LLVIGCYQSLELWNMSENKT----------MTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 792 (792)
Q Consensus 738 L~sgs~dg~I~IwDl~~~~~----------~~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd 792 (792)
|++|+.||+|+|||+..+.- ..+..|.+.|..+.| |...|++++.|.+|.|||
T Consensus 413 IVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWd 475 (499)
T KOG0281|consen 413 IVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWD 475 (499)
T ss_pred eeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEE
Confidence 99999999999999976531 156679999999999 456799999999999997
No 34
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=1.1e-30 Score=253.23 Aligned_cols=280 Identities=19% Similarity=0.331 Sum_probs=240.7
Q ss_pred eeeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEE
Q 003840 502 FKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVW 581 (792)
Q Consensus 502 ~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IW 581 (792)
-+....+..|.++|.++.|+-||+|.++++.|.+|++|+...+.+++++.+|...|.+++.+.|+..|++|+.|+.|.+|
T Consensus 7 tkr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vw 86 (307)
T KOG0316|consen 7 TKRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVW 86 (307)
T ss_pred chhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEE
Confidence 34667788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCe--eEEEee---CCeeEEEEecCCCEEEEEE
Q 003840 582 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS--CTRVFK---GGTAQMRFQPHLGRYLAAA 656 (792)
Q Consensus 582 dl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~--~~~~~~---~~~~~v~~sp~~~~lla~s 656 (792)
|+++ ++.++.|.+|.+.|+.+.|+.+. .++++|+.|..+++||.++.. .+.++. ..+.++.+ .+..|++|+
T Consensus 87 DV~T-Gkv~Rr~rgH~aqVNtV~fNees-SVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v--~~heIvaGS 162 (307)
T KOG0316|consen 87 DVNT-GKVDRRFRGHLAQVNTVRFNEES-SVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDV--AEHEIVAGS 162 (307)
T ss_pred Eccc-CeeeeecccccceeeEEEecCcc-eEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEe--cccEEEeec
Confidence 9998 88999999999999999999875 577899999999999998754 444443 34444444 456899999
Q ss_pred cCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCc--eEEEEEeC
Q 003840 657 AENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNK--FHSCVFHP 733 (792)
Q Consensus 657 ~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~--i~si~fsp 733 (792)
.||+++.||++.+.....+.+ .+|+|++|++|++.++.++.| +|++.|-.++ +.+..+++|.+. -..|++..
T Consensus 163 ~DGtvRtydiR~G~l~sDy~g--~pit~vs~s~d~nc~La~~l~stlrLlDk~tG---klL~sYkGhkn~eykldc~l~q 237 (307)
T KOG0316|consen 163 VDGTVRTYDIRKGTLSSDYFG--HPITSVSFSKDGNCSLASSLDSTLRLLDKETG---KLLKSYKGHKNMEYKLDCCLNQ 237 (307)
T ss_pred cCCcEEEEEeecceeehhhcC--CcceeEEecCCCCEEEEeeccceeeecccchh---HHHHHhcccccceeeeeeeecc
Confidence 999999999999987766655 579999999999999999988 9999999888 677777777655 34567888
Q ss_pred CCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCC-eEEEEEeCCCCEEEEEeCCCcEEEe
Q 003840 734 TYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGL-IAALAVSTETGYVASASHDKFVKLW 791 (792)
Q Consensus 734 dg~~L~sgs~dg~I~IwDl~~~~~~-~~~~h~~~-V~sl~fspdg~~LaSgs~DG~I~IW 791 (792)
...+++.|+.||.|++||+.+...+ .+..+... |.+++++|....|+++. ++.+.+|
T Consensus 238 sdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~-~~~~~~~ 296 (307)
T KOG0316|consen 238 SDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITAT-GHGDLFW 296 (307)
T ss_pred cceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEec-CCceece
Confidence 8889999999999999999998887 55566665 78999999887777775 4445555
No 35
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.98 E-value=7.5e-31 Score=288.59 Aligned_cols=279 Identities=23% Similarity=0.401 Sum_probs=254.4
Q ss_pred eeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCC
Q 003840 506 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN 585 (792)
Q Consensus 506 ~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s 585 (792)
..+.||...|.+++||.|...+++|+ .+.|+||+.++.++++++... .+.+..|.|.++++++|...|.+.|||+.+
T Consensus 367 i~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~~--y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS 443 (888)
T KOG0306|consen 367 IEIGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTITCG--YILASKFVPGDRYIVLGTKNGELQVFDLAS 443 (888)
T ss_pred eeeccchhheeEEEeecCceeeeecC-CCcEEEEEccCcceeEEeccc--cEEEEEecCCCceEEEeccCCceEEEEeeh
Confidence 34679999999999999998888775 568999999999999999754 899999999999999999999999999998
Q ss_pred CCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCC--------e-------eEEEeeCCeeEEEEecCCC
Q 003840 586 PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG--------S-------CTRVFKGGTAQMRFQPHLG 650 (792)
Q Consensus 586 ~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~--------~-------~~~~~~~~~~~v~~sp~~~ 650 (792)
...+.++..|.+.|++|+..||+..++ +|+.|.+|++||..-- + .+-.+...+.++.++|++.
T Consensus 444 -~~l~Eti~AHdgaIWsi~~~pD~~g~v-T~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk 521 (888)
T KOG0306|consen 444 -ASLVETIRAHDGAIWSISLSPDNKGFV-TGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGK 521 (888)
T ss_pred -hhhhhhhhccccceeeeeecCCCCceE-EecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCc
Confidence 677788889999999999999987655 9999999999997521 1 1122456788999999999
Q ss_pred EEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEE
Q 003840 651 RYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSC 729 (792)
Q Consensus 651 ~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si 729 (792)
+++++--|++|+||-+++.+....+.+|.-+|.|+.++||++++++|+.| +|+||-+.-| .|-+.+..|...|.++
T Consensus 522 ~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFG---DCHKS~fAHdDSvm~V 598 (888)
T KOG0306|consen 522 LLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFG---DCHKSFFAHDDSVMSV 598 (888)
T ss_pred EEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccc---hhhhhhhcccCceeEE
Confidence 99999999999999999999999999999999999999999999999999 9999999777 7888889999999999
Q ss_pred EEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003840 730 VFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 792 (792)
Q Consensus 730 ~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd 792 (792)
.|.|....+++++.|+.|+-||-...+.+ .+.+|...|+|++.+|+|.+++++++|.+|++|.
T Consensus 599 ~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE 662 (888)
T KOG0306|consen 599 QFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWE 662 (888)
T ss_pred EEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeee
Confidence 99999999999999999999999988877 8899999999999999999999999999999995
No 36
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=9.5e-31 Score=282.44 Aligned_cols=280 Identities=21% Similarity=0.393 Sum_probs=254.5
Q ss_pred eeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCC
Q 003840 506 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN 585 (792)
Q Consensus 506 ~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s 585 (792)
+.+..|+..|.|+.|+|...+++++-.+|.|.|||.++...++.+.-...+|++..|....+++++|+.|..|+||+.++
T Consensus 7 rk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt 86 (794)
T KOG0276|consen 7 RKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNT 86 (794)
T ss_pred hHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEeccc
Confidence 45667899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCC-eeEEEeeCC---eeEEEEecCC-CEEEEEEcCCe
Q 003840 586 PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG-SCTRVFKGG---TAQMRFQPHL-GRYLAAAAENV 660 (792)
Q Consensus 586 ~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~-~~~~~~~~~---~~~v~~sp~~-~~lla~s~dg~ 660 (792)
...+..|..|.+.|.+|+.||...+++ ++++|-+|++||.+.. .|..+|+++ +.+++|.|.+ +.+++++-|++
T Consensus 87 -~ekV~~FeAH~DyIR~iavHPt~P~vL-tsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrT 164 (794)
T KOG0276|consen 87 -GEKVKTFEAHSDYIRSIAVHPTLPYVL-TSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRT 164 (794)
T ss_pred -ceeeEEeeccccceeeeeecCCCCeEE-ecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeecccc
Confidence 788999999999999999999987655 9999999999999865 567778776 5678999976 46777888999
Q ss_pred EEEEECCCCeEEEEecCCCCCeEEEEEcCCC--CEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCE
Q 003840 661 VSILDAETQACRLSLQGHTKPIDSVCWDPSG--ELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPS 737 (792)
Q Consensus 661 I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg--~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~ 737 (792)
|+||.+....+.+++.+|...|+||+|-+.| .||++|++| .|+|||..+. .|+.++.+|...|..++|+|.-..
T Consensus 165 VKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk---~CV~TLeGHt~Nvs~v~fhp~lpi 241 (794)
T KOG0276|consen 165 VKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTK---SCVQTLEGHTNNVSFVFFHPELPI 241 (794)
T ss_pred EEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchH---HHHHHhhcccccceEEEecCCCcE
Confidence 9999999999999999999999999998855 499999999 9999999776 899999999999999999999999
Q ss_pred EEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEE
Q 003840 738 LLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKL 790 (792)
Q Consensus 738 L~sgs~dg~I~IwDl~~~~~~-~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~I 790 (792)
|++|+.||+|+||+..+.+.. ++.-.-+.|+|++-.+.++.++.|.++|.|.|
T Consensus 242 iisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 242 IISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred EEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEE
Confidence 999999999999999988766 55556778999999998888999988888754
No 37
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=9.7e-31 Score=267.72 Aligned_cols=242 Identities=28% Similarity=0.528 Sum_probs=222.6
Q ss_pred eeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC-CceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCC
Q 003840 506 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT-LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDAD 584 (792)
Q Consensus 506 ~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t-~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~ 584 (792)
..++||++.|.+|+|+..|++||+++.|-.+.+||.++ .++++.+.+|...|.+++|-|.|.+|++++.|.+|+.|+++
T Consensus 144 ~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~ 223 (406)
T KOG0295|consen 144 RSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECD 223 (406)
T ss_pred hhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecc
Confidence 35789999999999999999999999999999999987 68888899999999999999999999999999999999999
Q ss_pred CCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeE---EEeeCCeeEEEEecCC------------
Q 003840 585 NPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT---RVFKGGTAQMRFQPHL------------ 649 (792)
Q Consensus 585 s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~---~~~~~~~~~v~~sp~~------------ 649 (792)
+ +.++.++.+|...|..+..+.|| .++++|+.|.+|++|-+.++.|. +.++..+.+++|.|..
T Consensus 224 t-g~cv~t~~~h~ewvr~v~v~~DG-ti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~ 301 (406)
T KOG0295|consen 224 T-GYCVKTFPGHSEWVRMVRVNQDG-TIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGST 301 (406)
T ss_pred c-ceeEEeccCchHhEEEEEecCCe-eEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCC
Confidence 8 89999999999999999999986 58899999999999999999554 4455567777776542
Q ss_pred ---CEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCc
Q 003840 650 ---GRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNK 725 (792)
Q Consensus 650 ---~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~ 725 (792)
..+++++.|++|++||+.++.++.++.+|..+|..++|+|.|+||+++.+| ++++||+++. .|.+.+..|..-
T Consensus 302 ~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~---~cmk~~~ah~hf 378 (406)
T KOG0295|consen 302 NGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNL---QCMKTLEAHEHF 378 (406)
T ss_pred CCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccc---eeeeccCCCcce
Confidence 367788889999999999999999999999999999999999999999999 9999999876 899999999999
Q ss_pred eEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 003840 726 FHSCVFHPTYPSLLVIGCYQSLELWNM 752 (792)
Q Consensus 726 i~si~fspdg~~L~sgs~dg~I~IwDl 752 (792)
++++.|+.+..++++|+-|..+++|..
T Consensus 379 vt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 379 VTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred eEEEecCCCCceEEeccccceeeeeec
Confidence 999999999999999999999999974
No 38
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=5.4e-30 Score=252.02 Aligned_cols=280 Identities=19% Similarity=0.290 Sum_probs=247.2
Q ss_pred eeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEE--eccCCCCEEEEEECC-CCCeEEEEeCCCcEEEEe
Q 003840 506 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTN--LEEHSSLITDVRFSP-SMPRLATSSFDKTVRVWD 582 (792)
Q Consensus 506 ~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~--l~~h~~~V~~i~fsp-dg~~Lasgs~Dg~V~IWd 582 (792)
+.+++|...|.+++|+.+|..|++|+.|+++.||+++..+.... ..+|.+.|-.++|+| ....|++++.|.+|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 56789999999999999999999999999999999998765544 458999999999998 456899999999999999
Q ss_pred CCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEE--eeCCeeEEEEecCCCEEEEEEcCCe
Q 003840 583 ADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV--FKGGTAQMRFQPHLGRYLAAAAENV 660 (792)
Q Consensus 583 l~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~--~~~~~~~v~~sp~~~~lla~s~dg~ 660 (792)
++. ++++.......+.| -+.|+|+|.+ ++.++.|..|.+.|.++.+.... ++..+..++|+.+++.++.....|.
T Consensus 94 ~r~-~k~~~~i~~~~eni-~i~wsp~g~~-~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~ 170 (313)
T KOG1407|consen 94 IRS-GKCTARIETKGENI-NITWSPDGEY-IAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGC 170 (313)
T ss_pred ecc-CcEEEEeeccCcce-EEEEcCCCCE-EEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCce
Confidence 998 56665555444444 5789999875 55889999999999999887765 4556778899988888888888899
Q ss_pred EEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEE
Q 003840 661 VSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLL 739 (792)
Q Consensus 661 I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~ 739 (792)
|.|......+++..+.+|.....||.|+|+|+|||+|+.| .+.+||+.. ..|++.+.-++-+|+.+.|+.||++|+
T Consensus 171 v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~E---LiC~R~isRldwpVRTlSFS~dg~~lA 247 (313)
T KOG1407|consen 171 VEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDE---LICERCISRLDWPVRTLSFSHDGRMLA 247 (313)
T ss_pred EEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhH---hhhheeeccccCceEEEEeccCcceee
Confidence 9999999999999999999999999999999999999999 999999954 488889999999999999999999999
Q ss_pred EEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEeCC---------CcEEEe
Q 003840 740 VIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHD---------KFVKLW 791 (792)
Q Consensus 740 sgs~dg~I~IwDl~~~~~~~~~~h~~~V~sl~fspdg~~LaSgs~D---------G~I~IW 791 (792)
+++.|..|-|=++++|..+....++++...++|+|...+||.+++| |.|+||
T Consensus 248 SaSEDh~IDIA~vetGd~~~eI~~~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiF 308 (313)
T KOG1407|consen 248 SASEDHFIDIAEVETGDRVWEIPCEGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIF 308 (313)
T ss_pred ccCccceEEeEecccCCeEEEeeccCCceeEEecCCCceeeEEecCCCCccccccceeEEe
Confidence 9999999999999999999888999999999999999999988765 567765
No 39
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=2.5e-31 Score=267.06 Aligned_cols=277 Identities=25% Similarity=0.438 Sum_probs=244.6
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEec--------cCCCCEEEEEECCCCCeEEEEeCCCcEEEE
Q 003840 510 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE--------EHSSLITDVRFSPSMPRLATSSFDKTVRVW 581 (792)
Q Consensus 510 ~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~--------~h~~~V~~i~fspdg~~Lasgs~Dg~V~IW 581 (792)
+..+.+.|..|||||.||++|+.||.|.|||..+|+..+.++ -+...|.|+.|+.|...|++|+.||.|+||
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvW 290 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVW 290 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEE
Confidence 456678999999999999999999999999999998877654 378899999999999999999999999999
Q ss_pred eCCCCCceeEEec-ccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCC---eeEEEEecCCCEEEEEEc
Q 003840 582 DADNPGYSLRTFM-GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---TAQMRFQPHLGRYLAAAA 657 (792)
Q Consensus 582 dl~s~~~~i~~~~-~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~---~~~v~~sp~~~~lla~s~ 657 (792)
.+.+ +.+++.|. .|...|+|+.|+.|+..++ +++.|.++++.-+++|++++.|.++ ++...|.++|.++++++.
T Consensus 291 ri~t-G~ClRrFdrAHtkGvt~l~FSrD~SqiL-S~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSs 368 (508)
T KOG0275|consen 291 RIET-GQCLRRFDRAHTKGVTCLSFSRDNSQIL-SASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASS 368 (508)
T ss_pred EEec-chHHHHhhhhhccCeeEEEEccCcchhh-cccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecC
Confidence 9998 77777776 8999999999999988766 9999999999999999999999876 456789999999999999
Q ss_pred CCeEEEEECCCCeEEEEecC--CCCCeEEEEEcCC-CCEEEEEeCC-eEEEEECCCCCCcceEEEeec---CCCceEEEE
Q 003840 658 ENVVSILDAETQACRLSLQG--HTKPIDSVCWDPS-GELLASVSED-SVRVWTVGSGSEGECVHELSC---NGNKFHSCV 730 (792)
Q Consensus 658 dg~I~i~D~~t~~~~~~l~~--h~~~V~sv~~spd-g~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~---~~~~i~si~ 730 (792)
||+|++|+.++.+|+.+|+. ...+|.++-.-|. ...+++|... +|+|.++.. ..++.+.. .++.+.+++
T Consensus 369 DgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qG----QvVrsfsSGkREgGdFi~~~ 444 (508)
T KOG0275|consen 369 DGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQG----QVVRSFSSGKREGGDFINAI 444 (508)
T ss_pred CccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccc----eEEeeeccCCccCCceEEEE
Confidence 99999999999999988875 4557888887774 4577777766 999999853 45555543 456688999
Q ss_pred EeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003840 731 FHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 792 (792)
Q Consensus 731 fspdg~~L~sgs~dg~I~IwDl~~~~~~-~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd 792 (792)
++|.|.++++.+.|+.++.|.+.+|++. ++..|+..|..++-+|..+.||+-++||.+++|+
T Consensus 445 lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 445 LSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred ecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 9999999999999999999999999877 7889999999999999999999999999999996
No 40
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.97 E-value=6.5e-31 Score=256.61 Aligned_cols=279 Identities=22% Similarity=0.313 Sum_probs=246.5
Q ss_pred eeeecCCCCeEEEEEcC---CCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEe
Q 003840 506 NSVRASTSKVICCHFSS---DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 582 (792)
Q Consensus 506 ~~l~~H~~~V~~lafsp---dg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWd 582 (792)
.+..+|+.+|..++||| +|-+|++++.|+.-.+-+-++|.-+.++.+|.+.|+...++.+....++++.|-+.+|||
T Consensus 8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~ 87 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWD 87 (334)
T ss_pred eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhh
Confidence 35679999999999986 899999999999999999999999999999999999999999998999999999999999
Q ss_pred CCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCee----EEEeeCCeeEEEEecCCCEEEEEEcC
Q 003840 583 ADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC----TRVFKGGTAQMRFQPHLGRYLAAAAE 658 (792)
Q Consensus 583 l~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~----~~~~~~~~~~v~~sp~~~~lla~s~d 658 (792)
.-+ +..+..|. |+..|.+++|+.|.++|+ +|+.+..+||||++..+. +.-..+.+..+.|......|++.+.|
T Consensus 88 a~t-gdelhsf~-hkhivk~~af~~ds~~ll-tgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd 164 (334)
T KOG0278|consen 88 AVT-GDELHSFE-HKHIVKAVAFSQDSNYLL-TGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADD 164 (334)
T ss_pred hhh-hhhhhhhh-hhheeeeEEecccchhhh-ccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccC
Confidence 998 55566664 888999999999977655 999999999999987543 23345677888899999999999999
Q ss_pred CeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEE
Q 003840 659 NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSL 738 (792)
Q Consensus 659 g~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L 738 (792)
+.|++||.++++.+.++. ...+|+++.++++|++|.++....|++||..+. ..++.++. ...|.+..++|+...+
T Consensus 165 ~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf---~~lKs~k~-P~nV~SASL~P~k~~f 239 (334)
T KOG0278|consen 165 KTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSF---GLLKSYKM-PCNVESASLHPKKEFF 239 (334)
T ss_pred CceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEecCceeEEeccccc---cceeeccC-ccccccccccCCCceE
Confidence 999999999999998887 567899999999999999888889999999765 44544432 3468889999999999
Q ss_pred EEEEcCCeEEEEECCCCcEEE--EcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003840 739 LVIGCYQSLELWNMSENKTMT--LTAHEGLIAALAVSTETGYVASASHDKFVKLWK 792 (792)
Q Consensus 739 ~sgs~dg~I~IwDl~~~~~~~--~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd 792 (792)
++|+.|..++.||+.+++.+. ..+|.++|.|+.|+|||...++|++||+|+||.
T Consensus 240 VaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQ 295 (334)
T KOG0278|consen 240 VAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQ 295 (334)
T ss_pred EecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEE
Confidence 999999999999999999884 379999999999999999999999999999993
No 41
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.97 E-value=4e-29 Score=265.96 Aligned_cols=281 Identities=21% Similarity=0.394 Sum_probs=243.7
Q ss_pred eeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCc--eeEEeccCCCCEEEEEECCCCCeEEEEeCC----Cc
Q 003840 504 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK--SKTNLEEHSSLITDVRFSPSMPRLATSSFD----KT 577 (792)
Q Consensus 504 ~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~--~~~~l~~h~~~V~~i~fspdg~~Lasgs~D----g~ 577 (792)
....+.+|...++-..|+|.|.|+|+|...|+|+|||....+ ++.++....++|.+|.|+.|+++|++.++. |.
T Consensus 51 ~~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~ 130 (603)
T KOG0318|consen 51 SVDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGH 130 (603)
T ss_pred ceeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeE
Confidence 355678999999999999999999999999999999986533 345677788999999999999998888654 34
Q ss_pred EEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEe---eCCeeEEEEecCCCEEEE
Q 003840 578 VRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF---KGGTAQMRFQPHLGRYLA 654 (792)
Q Consensus 578 V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~---~~~~~~v~~sp~~~~lla 654 (792)
+.+||- +..+-.+.+|...|++++|-|...+.+++|++|++|.+|+=.-.+....+ ...+.+++|+|++.++++
T Consensus 131 ~F~~DS---G~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat 207 (603)
T KOG0318|consen 131 VFLWDS---GNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFAT 207 (603)
T ss_pred EEEecC---CCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEE
Confidence 666665 45678889999999999999999999999999999999986555544433 345789999999999999
Q ss_pred EEcCCeEEEEECCCCeEEEEec---CCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCC---CceE
Q 003840 655 AAAENVVSILDAETQACRLSLQ---GHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNG---NKFH 727 (792)
Q Consensus 655 ~s~dg~I~i~D~~t~~~~~~l~---~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~---~~i~ 727 (792)
++.||.|.+||-.+++.+..+. +|.+.|.+++|+||+..|++++.| +++|||+.+. .++.++.... ....
T Consensus 208 ~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~---slv~t~~~~~~v~dqqv 284 (603)
T KOG0318|consen 208 AGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTN---SLVSTWPMGSTVEDQQV 284 (603)
T ss_pred ecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeecc---ceEEEeecCCchhceEE
Confidence 9999999999999999999998 799999999999999999999999 9999999877 6666665443 3456
Q ss_pred EEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003840 728 SCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 792 (792)
Q Consensus 728 si~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd 792 (792)
.|.|. ...|++.+.+|.|.+++......+ .+.+|...|+++..++|+++|++|+.||.|.-|+
T Consensus 285 G~lWq--kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~ 348 (603)
T KOG0318|consen 285 GCLWQ--KDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWD 348 (603)
T ss_pred EEEEe--CCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEe
Confidence 67776 557999999999999999988866 7889999999999999999999999999999996
No 42
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.97 E-value=1.6e-29 Score=258.98 Aligned_cols=283 Identities=19% Similarity=0.276 Sum_probs=244.6
Q ss_pred eeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeC
Q 003840 504 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDA 583 (792)
Q Consensus 504 ~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl 583 (792)
.+..|..|++.|.+++.+|+.+++|||+.|....||++.++.....+.+|...|+++.|+.+|.+||||+.+|.|+||+.
T Consensus 56 S~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~ 135 (399)
T KOG0296|consen 56 SLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKV 135 (399)
T ss_pred ceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEc
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCC---eeEEEEecCCCEEEEEEcCCe
Q 003840 584 DNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---TAQMRFQPHLGRYLAAAAENV 660 (792)
Q Consensus 584 ~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~---~~~v~~sp~~~~lla~s~dg~ 660 (792)
.+ +.....+......|.-+.|||.+ .+|++|+.||.|.+|.+.+....+.+.++ .++-.|.|+|++++++..||+
T Consensus 136 st-g~~~~~~~~e~~dieWl~WHp~a-~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgt 213 (399)
T KOG0296|consen 136 ST-GGEQWKLDQEVEDIEWLKWHPRA-HILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGT 213 (399)
T ss_pred cc-CceEEEeecccCceEEEEecccc-cEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCce
Confidence 98 55555555566788999999975 57779999999999999998777777664 456679999999999999999
Q ss_pred EEEEECCCCeEEEEecC-CCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEee--------cCC---CceE
Q 003840 661 VSILDAETQACRLSLQG-HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELS--------CNG---NKFH 727 (792)
Q Consensus 661 I~i~D~~t~~~~~~l~~-h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~--------~~~---~~i~ 727 (792)
|++||..++.++..+.. ......++.++..+..++.|+.+ .+++-...++ +.+.... .+. ..|.
T Consensus 214 i~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sg---KVv~~~n~~~~~l~~~~e~~~esve 290 (399)
T KOG0296|consen 214 IIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSG---KVVNCNNGTVPELKPSQEELDESVE 290 (399)
T ss_pred EEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccc---eEEEecCCCCccccccchhhhhhhh
Confidence 99999999999988874 23457788999999999999888 7888877666 3333333 222 2355
Q ss_pred EEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003840 728 SCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 792 (792)
Q Consensus 728 si~fspdg~~L~sgs~dg~I~IwDl~~~~~~~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd 792 (792)
.+.|+..-+..++|+-||+|.|||+...++.....|...|+.+.|-+ ..+|++++.||.|++||
T Consensus 291 ~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wD 354 (399)
T KOG0296|consen 291 SIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWD 354 (399)
T ss_pred hcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcC-cchheeeccCceEEeee
Confidence 55666677889999999999999999999988899999999999998 78999999999999997
No 43
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=2.6e-29 Score=285.75 Aligned_cols=276 Identities=29% Similarity=0.487 Sum_probs=238.1
Q ss_pred CcceEEEEeCCCeeeecCCC---eeEeCCCcchhhcccccccCCCCCCceeeeccCCCCCCCCCCCcceeccCCcceeee
Q 003840 429 SKPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEA 505 (792)
Q Consensus 429 ~k~~l~~s~Dg~~~~ss~s~---~lWD~~tg~~~~~~~~~~~~g~~d~~v~~~l~~d~~~~~d~~~~~~d~~~~~~~~~~ 505 (792)
+...+.|++||.++++.... ++|++.+++. .+.
T Consensus 161 sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~--------------------------------------------~~~ 196 (456)
T KOG0266|consen 161 SVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS--------------------------------------------NLL 196 (456)
T ss_pred ceEEEEEcCCCCeEEEccCCCcEEEeecccccc--------------------------------------------hhh
Confidence 45568999999997775444 6676643321 133
Q ss_pred eeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEC-CCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCC
Q 003840 506 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHT-DTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDAD 584 (792)
Q Consensus 506 ~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl-~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~ 584 (792)
..+.+|...|.+++|+||+++|++++.|++|+|||+ ..+..++++.+|...|++++|+|++++|++|+.|++|+|||++
T Consensus 197 ~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~ 276 (456)
T KOG0266|consen 197 RELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVR 276 (456)
T ss_pred ccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEecc
Confidence 445789999999999999999999999999999999 6668999999999999999999999999999999999999999
Q ss_pred CCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCe--eEEEeeC-----CeeEEEEecCCCEEEEEEc
Q 003840 585 NPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS--CTRVFKG-----GTAQMRFQPHLGRYLAAAA 657 (792)
Q Consensus 585 s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~--~~~~~~~-----~~~~v~~sp~~~~lla~s~ 657 (792)
+ +++++.+.+|...|++++|++++. +|++++.|+.|++||+.++. +.+.+.. .+..+.|+|++.++++++.
T Consensus 277 ~-~~~~~~l~~hs~~is~~~f~~d~~-~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~ 354 (456)
T KOG0266|consen 277 T-GECVRKLKGHSDGISGLAFSPDGN-LLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASL 354 (456)
T ss_pred C-CeEEEeeeccCCceEEEEECCCCC-EEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecC
Confidence 8 899999999999999999999986 45577889999999999999 4555432 3678999999999999999
Q ss_pred CCeEEEEECCCCeEEEEecCCCCC---eEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecC-CCceEEEEEe
Q 003840 658 ENVVSILDAETQACRLSLQGHTKP---IDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCN-GNKFHSCVFH 732 (792)
Q Consensus 658 dg~I~i~D~~t~~~~~~l~~h~~~---V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~-~~~i~si~fs 732 (792)
|+.+++||+..++++..+.+|... +.+..+++.+.++++++.| .|++||+.++ ..+..+.+| ...+..+.++
T Consensus 355 d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~---~~~~~l~~h~~~~~~~~~~~ 431 (456)
T KOG0266|consen 355 DRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSG---GILQRLEGHSKAAVSDLSSH 431 (456)
T ss_pred CCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCcc---chhhhhcCCCCCceeccccC
Confidence 999999999999999999998775 3444567799999999999 9999999875 666777778 8889999999
Q ss_pred CCCCEEEEEE--cCCeEEEEECC
Q 003840 733 PTYPSLLVIG--CYQSLELWNMS 753 (792)
Q Consensus 733 pdg~~L~sgs--~dg~I~IwDl~ 753 (792)
+...++++++ .|+.|++|...
T Consensus 432 ~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 432 PTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred CCcCeeeecCcCCCceEEEecCC
Confidence 9999999998 67899999764
No 44
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.97 E-value=5.9e-29 Score=245.36 Aligned_cols=279 Identities=17% Similarity=0.261 Sum_probs=235.9
Q ss_pred eeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCC
Q 003840 507 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP 586 (792)
Q Consensus 507 ~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~ 586 (792)
.+.||..+++-+.|+.+|.+|++++.|.++.||-..+|+.+.++.+|.+.|+|+..+-+.++|++|+.|.++++||+++
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~t- 83 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVET- 83 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCC-
Confidence 4679999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CceeEEecccCCCeEEEEEcCCCCeEEEEEe----CCCcEEEEEcCC-------CeeEEEe---eCCeeEEEEecCCCEE
Q 003840 587 GYSLRTFMGHSASVMSLDFHPNKDDLICSCD----GDGEIRYWSINN-------GSCTRVF---KGGTAQMRFQPHLGRY 652 (792)
Q Consensus 587 ~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs----~Dg~I~iwdl~~-------~~~~~~~---~~~~~~v~~sp~~~~l 652 (792)
++.+..+. ....|..+.|+.+++.++++.. ..+.|.++|++. .++...+ ...+..+.|.|.+..|
T Consensus 84 Gk~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~i 162 (327)
T KOG0643|consen 84 GKQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETI 162 (327)
T ss_pred CcEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEE
Confidence 67777665 5678999999999886665542 247899999983 3333333 2456778899999999
Q ss_pred EEEEcCCeEEEEECCCC-eEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEE
Q 003840 653 LAAAAENVVSILDAETQ-ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCV 730 (792)
Q Consensus 653 la~s~dg~I~i~D~~t~-~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~ 730 (792)
++|..+|.|.+||++++ +.+.....|...|+.+++++|..++++++.| +.++||+++. .+++++.. ..++++.+
T Consensus 163 i~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl---~v~Kty~t-e~PvN~aa 238 (327)
T KOG0643|consen 163 IAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTL---EVLKTYTT-ERPVNTAA 238 (327)
T ss_pred EEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccce---eeEEEeee-ccccccee
Confidence 99999999999999998 5566667899999999999999999999999 9999999776 66666654 56899999
Q ss_pred EeCCCCEEEEEEcCCeEEE--EECCCCc------------EE-EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEe
Q 003840 731 FHPTYPSLLVIGCYQSLEL--WNMSENK------------TM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLW 791 (792)
Q Consensus 731 fspdg~~L~sgs~dg~I~I--wDl~~~~------------~~-~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IW 791 (792)
++|...+++.|+.-...-| -+.+.++ .+ .+.+|-++|++++|+|+|+..++|++||.|+|.
T Consensus 239 isP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h 314 (327)
T KOG0643|consen 239 ISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLH 314 (327)
T ss_pred cccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEE
Confidence 9999988888876432222 2222221 22 678999999999999999999999999999984
No 45
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.97 E-value=4.6e-28 Score=253.25 Aligned_cols=271 Identities=32% Similarity=0.582 Sum_probs=234.4
Q ss_pred cceEEEEeCCCeeeecCCC---eeEeCCCcchhhcccccccCCCCCCceeeeccCCCCCCCCCCCcceeccCCcceeeee
Q 003840 430 KPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEAN 506 (792)
Q Consensus 430 k~~l~~s~Dg~~~~ss~s~---~lWD~~tg~~~~~~~~~~~~g~~d~~v~~~l~~d~~~~~d~~~~~~d~~~~~~~~~~~ 506 (792)
...+.|++++.++++++.+ .+||..+++ ...
T Consensus 12 i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~----------------------------------------------~~~ 45 (289)
T cd00200 12 VTCVAFSPDGKLLATGSGDGTIKVWDLETGE----------------------------------------------LLR 45 (289)
T ss_pred EEEEEEcCCCCEEEEeecCcEEEEEEeeCCC----------------------------------------------cEE
Confidence 4467888998888775533 667765432 233
Q ss_pred eeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCC
Q 003840 507 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP 586 (792)
Q Consensus 507 ~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~ 586 (792)
.+..|...|.++.|++++++|++++.||.|++||+.+++.+..+..|...|.++.|++++.+|++++.||.|++||+.+
T Consensus 46 ~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~- 124 (289)
T cd00200 46 TLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVET- 124 (289)
T ss_pred EEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCC-
Confidence 4567888899999999999999999999999999999888889999999999999999988888888899999999986
Q ss_pred CceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeC---CeeEEEEecCCCEEEEEEcCCeEEE
Q 003840 587 GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAAENVVSI 663 (792)
Q Consensus 587 ~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~sp~~~~lla~s~dg~I~i 663 (792)
......+..|...|.+++|+|++ .++++++.|+.|++||++.++.+..+.. .+.++.|++++..+++++.++.|++
T Consensus 125 ~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i 203 (289)
T cd00200 125 GKCLTTLRGHTDWVNSVAFSPDG-TFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKL 203 (289)
T ss_pred cEEEEEeccCCCcEEEEEEcCcC-CEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEE
Confidence 56677777899999999999985 4666777799999999998887766653 5678999999999999999999999
Q ss_pred EECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEE
Q 003840 664 LDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIG 742 (792)
Q Consensus 664 ~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs 742 (792)
||+++++.+..+..|...|.+++|++++.++++++.+ .|++||+.++ ..+..+..+...+.+++|++++.+|++++
T Consensus 204 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 280 (289)
T cd00200 204 WDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTG---ECVQTLSGHTNSVTSLAWSPDGKRLASGS 280 (289)
T ss_pred EECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCc---eeEEEccccCCcEEEEEECCCCCEEEEec
Confidence 9999999998888899999999999999999988856 9999999765 56666778888999999999999999999
Q ss_pred cCCeEEEEE
Q 003840 743 CYQSLELWN 751 (792)
Q Consensus 743 ~dg~I~IwD 751 (792)
.|+.|++|+
T Consensus 281 ~d~~i~iw~ 289 (289)
T cd00200 281 ADGTIRIWD 289 (289)
T ss_pred CCCeEEecC
Confidence 999999996
No 46
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=7e-29 Score=268.06 Aligned_cols=240 Identities=24% Similarity=0.371 Sum_probs=217.8
Q ss_pred eeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCC
Q 003840 507 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP 586 (792)
Q Consensus 507 ~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~ 586 (792)
.+.-..-+|.++.|-...+++++|+.|..|+||+..+++.++.++.|.+.|+||+.+|...++++++.|-+|++||.+..
T Consensus 50 sfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~ 129 (794)
T KOG0276|consen 50 SFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENE 129 (794)
T ss_pred eeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCc
Confidence 34444567899999998899999999999999999999999999999999999999999999999999999999999998
Q ss_pred CceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeC---CeeEEEEecCC--CEEEEEEcCCeE
Q 003840 587 GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHL--GRYLAAAAENVV 661 (792)
Q Consensus 587 ~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~sp~~--~~lla~s~dg~I 661 (792)
..+..+|.+|...|.+|+|+|.+.+.|++++-|++|++|.+....+..++++ +++++++.+.+ .++++|+.|..|
T Consensus 130 wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~ti 209 (794)
T KOG0276|consen 130 WACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTI 209 (794)
T ss_pred eeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceE
Confidence 8889999999999999999999999999999999999999999888888765 57888887765 489999999999
Q ss_pred EEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEE
Q 003840 662 SILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLV 740 (792)
Q Consensus 662 ~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~s 740 (792)
+|||..+..|+.++.+|...|..++|+|.-.+|++|++| +++||...+. +....+.-....+++++-.+.++.+++
T Consensus 210 KvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty---~lE~tLn~gleRvW~I~~~k~~~~i~v 286 (794)
T KOG0276|consen 210 KVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTY---KLEKTLNYGLERVWCIAAHKGDGKIAV 286 (794)
T ss_pred EEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcce---ehhhhhhcCCceEEEEeecCCCCeEEE
Confidence 999999999999999999999999999999999999999 9999998776 555566667788999999998888888
Q ss_pred EEcCCeEEE
Q 003840 741 IGCYQSLEL 749 (792)
Q Consensus 741 gs~dg~I~I 749 (792)
|..+|.|.|
T Consensus 287 G~Deg~i~v 295 (794)
T KOG0276|consen 287 GFDEGSVTV 295 (794)
T ss_pred eccCCcEEE
Confidence 887776554
No 47
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=3.3e-30 Score=267.42 Aligned_cols=284 Identities=21% Similarity=0.305 Sum_probs=243.3
Q ss_pred eeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCc--eeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEE
Q 003840 503 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK--SKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV 580 (792)
Q Consensus 503 ~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~--~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~I 580 (792)
.....+..|.+.|..+.|-++...|++|+.|..|++|++...+ .+.++.+..+.|+++.|.++++++++++.|+.+++
T Consensus 166 ~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~ 245 (459)
T KOG0288|consen 166 RALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRL 245 (459)
T ss_pred hhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceee
Confidence 3456688999999999999998999999999999999987665 77888899999999999999999999999999999
Q ss_pred EeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCCeeEEEEecCCCEEEEEEcCCe
Q 003840 581 WDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENV 660 (792)
Q Consensus 581 Wdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~lla~s~dg~ 660 (792)
|+++. .....++.+|.+.|+++.|.-.... +++|+.|.+|++||+....|.+.+.....+..+......++++..|+.
T Consensus 246 Wnvd~-~r~~~TLsGHtdkVt~ak~~~~~~~-vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~~~~~~SgH~Dkk 323 (459)
T KOG0288|consen 246 WNVDS-LRLRHTLSGHTDKVTAAKFKLSHSR-VVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCSISDVISGHFDKK 323 (459)
T ss_pred eeccc-hhhhhhhcccccceeeehhhccccc-eeeccccchhhhhhhhhhheeccccccccccceEecceeeeecccccc
Confidence 99997 7788899999999999999876544 779999999999999999999876554444333333566778888999
Q ss_pred EEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecC----CCceEEEEEeCCC
Q 003840 661 VSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCN----GNKFHSCVFHPTY 735 (792)
Q Consensus 661 I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~----~~~i~si~fspdg 735 (792)
|++||.++..++.....+. .|+++..++++..|.+++.| ++.++|+++.. ....+... ...++.++|+|++
T Consensus 324 vRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~e---I~~~~sA~g~k~asDwtrvvfSpd~ 399 (459)
T KOG0288|consen 324 VRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKE---IRQTFSAEGFKCASDWTRVVFSPDG 399 (459)
T ss_pred eEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeeccccc---EEEEeeccccccccccceeEECCCC
Confidence 9999999999999988765 89999999999999999988 99999998863 33333221 2337889999999
Q ss_pred CEEEEEEcCCeEEEEECCCCcEEE-Ecc-cC-CCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003840 736 PSLLVIGCYQSLELWNMSENKTMT-LTA-HE-GLIAALAVSTETGYVASASHDKFVKLWK 792 (792)
Q Consensus 736 ~~L~sgs~dg~I~IwDl~~~~~~~-~~~-h~-~~V~sl~fspdg~~LaSgs~DG~I~IWd 792 (792)
.|+++|+.||.|+||++.++++.. +.. +. ..|++++|++.|.+|++++.++.+.+|.
T Consensus 400 ~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 400 SYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred ceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 999999999999999999999873 332 22 2699999999999999999999999994
No 48
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=4.7e-29 Score=277.75 Aligned_cols=280 Identities=22% Similarity=0.386 Sum_probs=248.8
Q ss_pred eecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCC
Q 003840 508 VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG 587 (792)
Q Consensus 508 l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~ 587 (792)
++..+..|..++|+|...+++++-..|.|.+||..-+.++..|.+|.++|..|+|+|...+|++|+.|-.|+||+..+ .
T Consensus 5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~-r 83 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKT-R 83 (1202)
T ss_pred hhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEeccc-c
Confidence 455677899999999999999999999999999999999999999999999999999999999999999999999998 7
Q ss_pred ceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCC---eeEEEEecCCCEEEEEEcCCeEEEE
Q 003840 588 YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---TAQMRFQPHLGRYLAAAAENVVSIL 664 (792)
Q Consensus 588 ~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~---~~~v~~sp~~~~lla~s~dg~I~i~ 664 (792)
+++.++.+|-+.|..+.||+.-..++ ++++|-+|+||+..+++|+..+.++ +.|..|+|....+++++-|-+|+||
T Consensus 84 rclftL~GHlDYVRt~~FHheyPWIl-SASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVW 162 (1202)
T KOG0292|consen 84 RCLFTLLGHLDYVRTVFFHHEYPWIL-SASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVW 162 (1202)
T ss_pred eehhhhccccceeEEeeccCCCceEE-EccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEE
Confidence 88999999999999999999877555 9999999999999999999999876 4667899999999999999999999
Q ss_pred ECCCC-----------------------------eEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcc
Q 003840 665 DAETQ-----------------------------ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGE 714 (792)
Q Consensus 665 D~~t~-----------------------------~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~ 714 (792)
|+... -..+.+++|...|+-++|+|.-.+|++|++| .|++|.+...+ .-
T Consensus 163 DisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetK-aW 241 (1202)
T KOG0292|consen 163 DISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETK-AW 241 (1202)
T ss_pred eecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEecccc-ce
Confidence 97421 1234578899999999999999999999999 99999997543 24
Q ss_pred eEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEe
Q 003840 715 CVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLW 791 (792)
Q Consensus 715 ~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IW 791 (792)
.+.+..+|.+.|.++.|+|.-+.|++.+.|++|+|||+...+.+ ++....+..+.++-+|..+++|.| +|+-+.||
T Consensus 242 EvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAg-HDsGm~VF 318 (1202)
T KOG0292|consen 242 EVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAG-HDSGMIVF 318 (1202)
T ss_pred eehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeee-cCCceEEE
Confidence 56677889999999999999999999999999999999998887 566666789999999999988765 55555555
No 49
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.97 E-value=3.8e-29 Score=250.66 Aligned_cols=285 Identities=21% Similarity=0.374 Sum_probs=239.4
Q ss_pred eeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC------------------CceeEEeccCCCCEEEEEECCC
Q 003840 504 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT------------------LKSKTNLEEHSSLITDVRFSPS 565 (792)
Q Consensus 504 ~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t------------------~~~~~~l~~h~~~V~~i~fspd 565 (792)
+...+..|..++.|.+|++||.++|+|+.|..|+|+|++. .-.++++..|.+.|+++.|+|.
T Consensus 104 Et~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPr 183 (430)
T KOG0640|consen 104 ETKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPR 183 (430)
T ss_pred ceEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecch
Confidence 4566789999999999999999999999999999999861 1356788899999999999999
Q ss_pred CCeEEEEeCCCcEEEEeCCCCCc-eeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEE------eeC
Q 003840 566 MPRLATSSFDKTVRVWDADNPGY-SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV------FKG 638 (792)
Q Consensus 566 g~~Lasgs~Dg~V~IWdl~s~~~-~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~------~~~ 638 (792)
...|++|+.|++|++||+..... ...........|.+|.|+|.|++++ .|..-.++++||+++..|... ..+
T Consensus 184 e~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefll-vgTdHp~~rlYdv~T~QcfvsanPd~qht~ 262 (430)
T KOG0640|consen 184 ETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLL-VGTDHPTLRLYDVNTYQCFVSANPDDQHTG 262 (430)
T ss_pred hheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEE-EecCCCceeEEeccceeEeeecCccccccc
Confidence 99999999999999999986321 1112223456899999999988655 888889999999999988754 346
Q ss_pred CeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecC-CC-CCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcce
Q 003840 639 GTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQG-HT-KPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGEC 715 (792)
Q Consensus 639 ~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~-h~-~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~ 715 (792)
.+.++.+++.++.+++++.||.|++||--+++|+.++.. |. ..|.+..|..+++||++.+.| .+++|.+.++ ++
T Consensus 263 ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~---R~ 339 (430)
T KOG0640|consen 263 AITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTG---RM 339 (430)
T ss_pred ceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCC---ce
Confidence 788999999999999999999999999999999988864 54 469999999999999999999 9999999888 67
Q ss_pred EEEeecCCCc-----eEEEEEeCCCCEEEEEEcC-CeEEEEECCCCcEE--EEcccCCCeEEEEEeCCCCEEEEEeCCCc
Q 003840 716 VHELSCNGNK-----FHSCVFHPTYPSLLVIGCY-QSLELWNMSENKTM--TLTAHEGLIAALAVSTETGYVASASHDKF 787 (792)
Q Consensus 716 i~~~~~~~~~-----i~si~fspdg~~L~sgs~d-g~I~IwDl~~~~~~--~~~~h~~~V~sl~fspdg~~LaSgs~DG~ 787 (792)
+.++.+.+.. -+...|+....|++.-... +.++-||.++...+ ...+|.+.+..+.-+|.+..+++|+.|-.
T Consensus 340 l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~r 419 (430)
T KOG0640|consen 340 LKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFR 419 (430)
T ss_pred EEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccce
Confidence 7776654221 2345677777777766543 68999999998766 44589999999999999999999999999
Q ss_pred EEEeC
Q 003840 788 VKLWK 792 (792)
Q Consensus 788 I~IWd 792 (792)
+++|.
T Consensus 420 aRFWy 424 (430)
T KOG0640|consen 420 ARFWY 424 (430)
T ss_pred eeeee
Confidence 99993
No 50
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.97 E-value=5.4e-29 Score=264.00 Aligned_cols=292 Identities=16% Similarity=0.212 Sum_probs=235.1
Q ss_pred CcceeeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCc----eeEEe-ccCCCCEEEEEECCCCCeEEEEe
Q 003840 499 GFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK----SKTNL-EEHSSLITDVRFSPSMPRLATSS 573 (792)
Q Consensus 499 ~~~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~----~~~~l-~~h~~~V~~i~fspdg~~Lasgs 573 (792)
..+...-..+.+|+..|.++++.|.|-.|++|+.|..|++||+.... ..+.| ......|.++.|++.+..|++.+
T Consensus 154 ~IP~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvs 233 (641)
T KOG0772|consen 154 LIPGSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVS 233 (641)
T ss_pred cCCccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEe
Confidence 34455566789999999999999999999999999999999987432 22222 24566799999999999999999
Q ss_pred CCCcEEEEeCCCCCcee------------EEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCee-EEEee---
Q 003840 574 FDKTVRVWDADNPGYSL------------RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC-TRVFK--- 637 (792)
Q Consensus 574 ~Dg~V~IWdl~s~~~~i------------~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~-~~~~~--- 637 (792)
....++|+|-+. ...+ ...++|...++|.+|+|+.+..|++|+.||++||||++..+. +.+++
T Consensus 234 g~aqakl~DRdG-~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~ 312 (641)
T KOG0772|consen 234 GSAQAKLLDRDG-FEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKP 312 (641)
T ss_pred cCcceeEEccCC-ceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeecc
Confidence 899999999874 2222 233589999999999999999999999999999999987543 23332
Q ss_pred -----CCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeE---EEEecCCCC--CeEEEEEcCCCCEEEEEeCC-eEEEEE
Q 003840 638 -----GGTAQMRFQPHLGRYLAAAAENVVSILDAETQAC---RLSLQGHTK--PIDSVCWDPSGELLASVSED-SVRVWT 706 (792)
Q Consensus 638 -----~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~---~~~l~~h~~--~V~sv~~spdg~~Las~s~d-~I~IwD 706 (792)
..+..++|++++..|++++.||.|.+||...... ...-.+|.. .|+||.|++||++|++-+.| ++++||
T Consensus 313 ~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWD 392 (641)
T KOG0772|consen 313 AGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWD 392 (641)
T ss_pred CCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeee
Confidence 2467799999999999999999999999865422 233356777 89999999999999999988 999999
Q ss_pred CCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEc------CCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEE
Q 003840 707 VGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGC------YQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYV 779 (792)
Q Consensus 707 l~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~------dg~I~IwDl~~~~~~-~~~~h~~~V~sl~fspdg~~L 779 (792)
++..++...+..-......-+.|+|+|+.+.|++|.. .|.+++||..+...+ .+.-....|..+.|+|.-+.|
T Consensus 393 Lrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi 472 (641)
T KOG0772|consen 393 LRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQI 472 (641)
T ss_pred ccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhhe
Confidence 9976543333333334455788999999999999865 368999999998877 555557789999999988888
Q ss_pred EEEeCCCcEEEe
Q 003840 780 ASASHDKFVKLW 791 (792)
Q Consensus 780 aSgs~DG~I~IW 791 (792)
+.++.||.++||
T Consensus 473 ~~gsgdG~~~vy 484 (641)
T KOG0772|consen 473 FAGSGDGTAHVY 484 (641)
T ss_pred eeecCCCceEEE
Confidence 899999999986
No 51
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.97 E-value=2.6e-29 Score=256.14 Aligned_cols=242 Identities=22% Similarity=0.443 Sum_probs=221.5
Q ss_pred CceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEE
Q 003840 544 LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIR 623 (792)
Q Consensus 544 ~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~ 623 (792)
.+..+.+.+|.+.|.||++.|.+.+|++|+.|++|+|||+.+ +....++.+|...|..+++++-..++| +++.|+.|+
T Consensus 141 wKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlat-g~LkltltGhi~~vr~vavS~rHpYlF-s~gedk~VK 218 (460)
T KOG0285|consen 141 WKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLAT-GQLKLTLTGHIETVRGVAVSKRHPYLF-SAGEDKQVK 218 (460)
T ss_pred ceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEccc-CeEEEeecchhheeeeeeecccCceEE-EecCCCeeE
Confidence 456677889999999999999999999999999999999998 788889999999999999999877655 999999999
Q ss_pred EEEcCCCeeEEEeeCC---eeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC
Q 003840 624 YWSINNGSCTRVFKGG---TAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED 700 (792)
Q Consensus 624 iwdl~~~~~~~~~~~~---~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d 700 (792)
.||++..+.++.+.++ +.++..+|....|++++.|.+++|||+++...+..+.+|..+|..+.+.|-..-+++|+.|
T Consensus 219 CwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D 298 (460)
T KOG0285|consen 219 CWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHD 298 (460)
T ss_pred EEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCC
Confidence 9999999999988765 6678899999999999999999999999999999999999999999999988889999999
Q ss_pred -eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCE
Q 003840 701 -SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGY 778 (792)
Q Consensus 701 -~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~~~~h~~~V~sl~fspdg~~ 778 (792)
+|++||++.+ +....+..|...+.+++.+|....|++++.| .|+-|++..+..+ .+.+|...|++++...|+ +
T Consensus 299 ~tvrlWDl~ag---kt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~~nsD~-v 373 (460)
T KOG0285|consen 299 STVRLWDLRAG---KTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLSVNSDG-V 373 (460)
T ss_pred ceEEEeeeccC---ceeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCccchhhccccccceeeeeeeccCc-e
Confidence 9999999887 6777888899999999999999888887776 6999999999887 788999999999998776 7
Q ss_pred EEEEeCCCcEEEeC
Q 003840 779 VASASHDKFVKLWK 792 (792)
Q Consensus 779 LaSgs~DG~I~IWd 792 (792)
+++|++.|.|.+||
T Consensus 374 ~~~G~dng~~~fwd 387 (460)
T KOG0285|consen 374 LVSGGDNGSIMFWD 387 (460)
T ss_pred EEEcCCceEEEEEe
Confidence 88899999999997
No 52
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.4e-27 Score=241.76 Aligned_cols=283 Identities=20% Similarity=0.306 Sum_probs=238.8
Q ss_pred eeeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeC--CCcEE
Q 003840 502 FKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF--DKTVR 579 (792)
Q Consensus 502 ~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~--Dg~V~ 579 (792)
|+..+.++.-.+.|.++.|+.+|.+|++++.|..|+|||..+++.++++..+...|..++|......++.++. |.+|+
T Consensus 4 ~~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIr 83 (311)
T KOG1446|consen 4 FRPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIR 83 (311)
T ss_pred cccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceE
Confidence 4556667778889999999999999999999999999999999999999999999999999888777777776 88999
Q ss_pred EEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeC-CeeEEEEecCCCEEEEEEcC
Q 003840 580 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG-GTAQMRFQPHLGRYLAAAAE 658 (792)
Q Consensus 580 IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~-~~~~v~~sp~~~~lla~s~d 658 (792)
..++.+ .+.++.|.+|...|.+|+.+|-++ .|++++.|++|++||++..+|...+.. +...++|.|.|-.++++...
T Consensus 84 yLsl~d-NkylRYF~GH~~~V~sL~~sP~~d-~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~GLifA~~~~~ 161 (311)
T KOG1446|consen 84 YLSLHD-NKYLRYFPGHKKRVNSLSVSPKDD-TFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIAAFDPEGLIFALANGS 161 (311)
T ss_pred EEEeec-CceEEEcCCCCceEEEEEecCCCC-eEEecccCCeEEeeEecCCCCceEEecCCCcceeECCCCcEEEEecCC
Confidence 999998 788999999999999999999975 566999999999999999888877664 45668899998888877777
Q ss_pred CeEEEEECCCC--eEEEEe--c-CCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCC---ceEEE
Q 003840 659 NVVSILDAETQ--ACRLSL--Q-GHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGN---KFHSC 729 (792)
Q Consensus 659 g~I~i~D~~t~--~~~~~l--~-~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~---~i~si 729 (792)
+.|++||++.. .+..++ . +.....+.|.|+|||++|+.++.. .+++.|.-+|. ....+..+.. --..+
T Consensus 162 ~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~---~~~tfs~~~~~~~~~~~a 238 (311)
T KOG1446|consen 162 ELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGT---VKSTFSGYPNAGNLPLSA 238 (311)
T ss_pred CeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCc---EeeeEeeccCCCCcceeE
Confidence 79999999874 222233 2 346678999999999999988888 89999998774 4444444333 23678
Q ss_pred EEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcc-cCCCeEEEEEeCCCCEEEEEeCCCcEEEe
Q 003840 730 VFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTA-HEGLIAALAVSTETGYVASASHDKFVKLW 791 (792)
Q Consensus 730 ~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~~~~-h~~~V~sl~fspdg~~LaSgs~DG~I~IW 791 (792)
+|+||+++|++|+.||+|++|+++++..+ .+.+ +.+++.++.|+|.-.++++++ ..+.+|
T Consensus 239 ~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~--s~l~fw 300 (311)
T KOG1446|consen 239 TFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSAS--SNLVFW 300 (311)
T ss_pred EECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecC--ceEEEE
Confidence 99999999999999999999999999888 5555 789999999999887777764 467777
No 53
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=8.9e-29 Score=256.23 Aligned_cols=277 Identities=19% Similarity=0.287 Sum_probs=234.8
Q ss_pred CcceEEEEeCCCeeeecCCC---eeEeCCCcchhhcccccccCCCCCCceeeeccCCCCCCCCCCCcceeccCCcceeee
Q 003840 429 SKPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEA 505 (792)
Q Consensus 429 ~k~~l~~s~Dg~~~~ss~s~---~lWD~~tg~~~~~~~~~~~~g~~d~~v~~~l~~d~~~~~d~~~~~~d~~~~~~~~~~ 505 (792)
..-.+.||++|+|+++++++ .||+ +.....++..
T Consensus 226 EVWfl~FS~nGkyLAsaSkD~Taiiw~-------------------------------------------v~~d~~~kl~ 262 (519)
T KOG0293|consen 226 EVWFLQFSHNGKYLASASKDSTAIIWI-------------------------------------------VVYDVHFKLK 262 (519)
T ss_pred cEEEEEEcCCCeeEeeccCCceEEEEE-------------------------------------------EecCcceeee
Confidence 45678999999999887766 4443 3334447788
Q ss_pred eeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEec-cCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCC
Q 003840 506 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE-EHSSLITDVRFSPSMPRLATSSFDKTVRVWDAD 584 (792)
Q Consensus 506 ~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~-~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~ 584 (792)
+++.+|..+|..+.||||.++|++|+.|..+.+||+.+|.....+. ++...+.+++|.|||..|++|+.|+.|..||++
T Consensus 263 ~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD 342 (519)
T KOG0293|consen 263 KTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD 342 (519)
T ss_pred eeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCC
Confidence 9999999999999999999999999999999999999999888776 457889999999999999999999999999998
Q ss_pred CCCceeEEecccC-CCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEe--eCCeeEEEEecCCCEEEEEEcCCeE
Q 003840 585 NPGYSLRTFMGHS-ASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF--KGGTAQMRFQPHLGRYLAAAAENVV 661 (792)
Q Consensus 585 s~~~~i~~~~~h~-~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~--~~~~~~v~~sp~~~~lla~s~dg~I 661 (792)
. ..+..+.+-. ..|.+++..+||++++ +.+.|..|++|+.++......+ ..++.+++++.+++++++.-.+..|
T Consensus 343 g--n~~~~W~gvr~~~v~dlait~Dgk~vl-~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei 419 (519)
T KOG0293|consen 343 G--NILGNWEGVRDPKVHDLAITYDGKYVL-LVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEI 419 (519)
T ss_pred c--chhhcccccccceeEEEEEcCCCcEEE-EEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCee
Confidence 4 4444444433 5699999999998877 4557999999999887766443 4578899999999999999999999
Q ss_pred EEEECCCCeEEEEecCCCCC--eEEEEEcC-CCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCC-C
Q 003840 662 SILDAETQACRLSLQGHTKP--IDSVCWDP-SGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTY-P 736 (792)
Q Consensus 662 ~i~D~~t~~~~~~l~~h~~~--V~sv~~sp-dg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg-~ 736 (792)
++||++..+.+..+.+|... |..-||-. +..++++|++| .|+||+..++ +.+..+.+|...+.+++|+|.. .
T Consensus 420 ~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sg---kll~~LsGHs~~vNcVswNP~~p~ 496 (519)
T KOG0293|consen 420 HLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISG---KLLAVLSGHSKTVNCVSWNPADPE 496 (519)
T ss_pred EEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCC---ceeEeecCCcceeeEEecCCCCHH
Confidence 99999999999999998764 44445654 45799999999 9999999887 8999999999999999999965 5
Q ss_pred EEEEEEcCCeEEEEECCC
Q 003840 737 SLLVIGCYQSLELWNMSE 754 (792)
Q Consensus 737 ~L~sgs~dg~I~IwDl~~ 754 (792)
.+|+++.||+|+||....
T Consensus 497 m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 497 MFASASDDGTIRIWGPSD 514 (519)
T ss_pred HhhccCCCCeEEEecCCc
Confidence 788999999999998764
No 54
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.96 E-value=9.5e-28 Score=240.57 Aligned_cols=271 Identities=23% Similarity=0.357 Sum_probs=232.5
Q ss_pred cceEEEEeCCCeeeecCCC---eeEeCCCcchhhcccccccCCCCCCceeeeccCCCCCCCCCCCcceeccCCcceeeee
Q 003840 430 KPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEAN 506 (792)
Q Consensus 430 k~~l~~s~Dg~~~~ss~s~---~lWD~~tg~~~~~~~~~~~~g~~d~~v~~~l~~d~~~~~d~~~~~~d~~~~~~~~~~~ 506 (792)
...++|.|||..+++++.+ -||++.... +...
T Consensus 50 I~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdc---------------------------------------------eN~~ 84 (338)
T KOG0265|consen 50 IYTIKFHPDGSCFASGGSDRAIVLWNVYGDC---------------------------------------------ENFW 84 (338)
T ss_pred EEEEEECCCCCeEeecCCcceEEEEeccccc---------------------------------------------ccee
Confidence 4578999999999999888 457753211 1334
Q ss_pred eeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCC-eEEEEeCCCcEEEEeCCC
Q 003840 507 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP-RLATSSFDKTVRVWDADN 585 (792)
Q Consensus 507 ~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~-~Lasgs~Dg~V~IWdl~s 585 (792)
.+++|.+.|..+.|.+|++.|++++.|++|+.||+++|+.++.+++|...|+.+.-+.-|. ++.+++.||+++|||+++
T Consensus 85 ~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~ 164 (338)
T KOG0265|consen 85 VLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRK 164 (338)
T ss_pred eeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecc
Confidence 5679999999999999999999999999999999999999999999999999998555444 677889999999999997
Q ss_pred CCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeC---CeeEEEEecCCCEEEEEEcCCeEE
Q 003840 586 PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAAENVVS 662 (792)
Q Consensus 586 ~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~sp~~~~lla~s~dg~I~ 662 (792)
+..++++. ....++++.|...+..++ +|+-|+.|++||++......++.+ .+..+..++++.++++-+.|.+|+
T Consensus 165 -k~~~~t~~-~kyqltAv~f~d~s~qv~-sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvr 241 (338)
T KOG0265|consen 165 -KEAIKTFE-NKYQLTAVGFKDTSDQVI-SGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVR 241 (338)
T ss_pred -cchhhccc-cceeEEEEEeccccccee-eccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEE
Confidence 55566554 567899999998877666 999999999999999999888876 467789999999999999999999
Q ss_pred EEECCCC----eEEEEecCCC----CCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeC
Q 003840 663 ILDAETQ----ACRLSLQGHT----KPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHP 733 (792)
Q Consensus 663 i~D~~t~----~~~~~l~~h~----~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fsp 733 (792)
+||++-. +++..+.+|. .....++|+|+++++.+++.| .+++||.... .++..+.+|.+.|.++.|+|
T Consensus 242 vwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r---~~lyklpGh~gsvn~~~Fhp 318 (338)
T KOG0265|consen 242 VWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSR---RILYKLPGHYGSVNEVDFHP 318 (338)
T ss_pred EEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccc---cEEEEcCCcceeEEEeeecC
Confidence 9999864 5577777653 345678899999999999999 9999999765 78999999999999999999
Q ss_pred CCCEEEEEEcCCeEEEEE
Q 003840 734 TYPSLLVIGCYQSLELWN 751 (792)
Q Consensus 734 dg~~L~sgs~dg~I~IwD 751 (792)
....|.+++.|.+|++=+
T Consensus 319 ~e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 319 TEPIILSCSSDKTIYLGE 336 (338)
T ss_pred CCcEEEEeccCceeEeec
Confidence 999999999999998744
No 55
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.96 E-value=1.3e-29 Score=257.02 Aligned_cols=273 Identities=21% Similarity=0.409 Sum_probs=228.6
Q ss_pred CCceeeeccCCC---CCCCCCCCcceeccCCcceeeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeE
Q 003840 472 DDNVESFLSHDD---TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKT 548 (792)
Q Consensus 472 d~~v~~~l~~d~---~~~~d~~~~~~d~~~~~~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~ 548 (792)
.+.+.+.-.+|+ .+..|.++++||... +...+.+.||++.|.|+.|.. +.|++|+.|.+|+|||+++++++.
T Consensus 197 skgVYClQYDD~kiVSGlrDnTikiWD~n~---~~c~~~L~GHtGSVLCLqyd~--rviisGSSDsTvrvWDv~tge~l~ 271 (499)
T KOG0281|consen 197 SKGVYCLQYDDEKIVSGLRDNTIKIWDKNS---LECLKILTGHTGSVLCLQYDE--RVIVSGSSDSTVRVWDVNTGEPLN 271 (499)
T ss_pred CCceEEEEecchhhhcccccCceEEecccc---HHHHHhhhcCCCcEEeeeccc--eEEEecCCCceEEEEeccCCchhh
Confidence 344555544444 456778888887654 457788999999999999964 499999999999999999999999
Q ss_pred EeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCc--eeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEE
Q 003840 549 NLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGY--SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWS 626 (792)
Q Consensus 549 ~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~--~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwd 626 (792)
++-+|...|..+.|+. .++++++.|.+|.|||+..+.. +.+.+.+|...|+.+.|+. .+|++++.|.+|++|+
T Consensus 272 tlihHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~---kyIVsASgDRTikvW~ 346 (499)
T KOG0281|consen 272 TLIHHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD---KYIVSASGDRTIKVWS 346 (499)
T ss_pred HHhhhcceeEEEEEeC--CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc---ceEEEecCCceEEEEe
Confidence 9999999999999974 4999999999999999987542 3456779999999999973 4888999999999999
Q ss_pred cCCCeeEEEeeCCeeEEEEec-CCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEE
Q 003840 627 INNGSCTRVFKGGTAQMRFQP-HLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRV 704 (792)
Q Consensus 627 l~~~~~~~~~~~~~~~v~~sp-~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~I 704 (792)
+.++++++++.++...++..- .+..+++|++|.+|++||++.|+++..+++|+.-|.||.|+ .+.|++|+.| +|+|
T Consensus 347 ~st~efvRtl~gHkRGIAClQYr~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd--~krIVSGaYDGkikv 424 (499)
T KOG0281|consen 347 TSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD--NKRIVSGAYDGKIKV 424 (499)
T ss_pred ccceeeehhhhcccccceehhccCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeec--CceeeeccccceEEE
Confidence 999999999988877766544 44556677889999999999999999999999999999995 5779999988 9999
Q ss_pred EECCCCCCc------ceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE
Q 003840 705 WTVGSGSEG------ECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM 758 (792)
Q Consensus 705 wDl~s~~~~------~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~ 758 (792)
||+..+... .|+..+..|.+.|..+.| |...|++++.|.+|.|||+.++...
T Consensus 425 Wdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWdFl~~~~~ 482 (499)
T KOG0281|consen 425 WDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWDFLNGPPS 482 (499)
T ss_pred EecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEEcCCCCcc
Confidence 999876443 356667778888888888 4557999999999999999877544
No 56
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.5e-28 Score=241.06 Aligned_cols=276 Identities=21% Similarity=0.375 Sum_probs=230.9
Q ss_pred eEEEEEcC-CCCEEEEEe-------CCCeEEEEECCCCceeEEec--cCCCCEEEEEECCC-CCeEEEEeCCCcEEEEeC
Q 003840 515 VICCHFSS-DGKLLATGG-------HDKKAVLWHTDTLKSKTNLE--EHSSLITDVRFSPS-MPRLATSSFDKTVRVWDA 583 (792)
Q Consensus 515 V~~lafsp-dg~~Lasgs-------~Dg~I~vWdl~t~~~~~~l~--~h~~~V~~i~fspd-g~~Lasgs~Dg~V~IWdl 583 (792)
=.++.||| -.++||++. ..|++.|.++....-+..+. .-.+.+.+++|+++ .+.+++++.||+++|||+
T Consensus 11 GysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~ 90 (311)
T KOG0277|consen 11 GYSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDL 90 (311)
T ss_pred cceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEecc
Confidence 36788998 233444432 46889999997555444443 35678999999995 458899999999999999
Q ss_pred CCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCCeeE---EEEecCCC-EEEEEEcCC
Q 003840 584 DNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQ---MRFQPHLG-RYLAAAAEN 659 (792)
Q Consensus 584 ~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~---v~~sp~~~-~lla~s~dg 659 (792)
..+..++..++.|..+|.++.|++..+..+++++.|++|++|+......+.+|+++..+ ..|+|... .+++++.|+
T Consensus 91 ~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~ 170 (311)
T KOG0277|consen 91 TMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDG 170 (311)
T ss_pred CCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCc
Confidence 88888999999999999999999998888889999999999999999999999887554 67898765 455677799
Q ss_pred eEEEEECCCCeEEEEecCCCCCeEEEEEcC-CCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCC-C
Q 003840 660 VVSILDAETQACRLSLQGHTKPIDSVCWDP-SGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTY-P 736 (792)
Q Consensus 660 ~I~i~D~~t~~~~~~l~~h~~~V~sv~~sp-dg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg-~ 736 (792)
.+++||++.......+..|...|.|+.|+. +.++|++++.| .|++||+++.+ .++.++.+|...|+.+.|+|.. .
T Consensus 171 ~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r--~pl~eL~gh~~AVRkvk~Sph~~~ 248 (311)
T KOG0277|consen 171 TLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLR--TPLFELNGHGLAVRKVKFSPHHAS 248 (311)
T ss_pred eEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhcc--ccceeecCCceEEEEEecCcchhh
Confidence 999999988655555889999999999998 55688888888 99999999765 5688889999999999999965 5
Q ss_pred EEEEEEcCCeEEEEECCCCcEE--EEcccCCCeEEEEEeC-CCCEEEEEeCCCcEEEeC
Q 003840 737 SLLVIGCYQSLELWNMSENKTM--TLTAHEGLIAALAVST-ETGYVASASHDKFVKLWK 792 (792)
Q Consensus 737 ~L~sgs~dg~I~IwDl~~~~~~--~~~~h~~~V~sl~fsp-dg~~LaSgs~DG~I~IWd 792 (792)
.|++++.|-+++|||....... +..-|...|..+.|++ +..++|+++.|+.++||+
T Consensus 249 lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 249 LLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWN 307 (311)
T ss_pred HhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeec
Confidence 6788889999999999865544 5667899999999987 677999999999999996
No 57
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=2.2e-29 Score=257.43 Aligned_cols=280 Identities=17% Similarity=0.330 Sum_probs=236.2
Q ss_pred eeeeeeeecCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEE
Q 003840 502 FKEANSVRASTSKVICCHFSSDG-KLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV 580 (792)
Q Consensus 502 ~~~~~~l~~H~~~V~~lafspdg-~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~I 580 (792)
-..+..|.||.+.|.|++=+|.. ..+|+|+.||.|+|||+...++..++..|.+.|..|++.. ..+++++.|++|+.
T Consensus 56 kPFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~ 133 (433)
T KOG0268|consen 56 KPFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQ 133 (433)
T ss_pred ccchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceee
Confidence 34567789999999999999987 7899999999999999999999999999999999999987 68999999999999
Q ss_pred EeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee---CCeeEEEEecCCCEEEEEE-
Q 003840 581 WDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLGRYLAAA- 656 (792)
Q Consensus 581 Wdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~---~~~~~v~~sp~~~~lla~s- 656 (792)
|.++. .++.++. ....+..|+-+.. ...++||+. .|.|||......+..+. ..+.++.|+|....+++++
T Consensus 134 wk~~~--~p~~til-g~s~~~gIdh~~~-~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~ 207 (433)
T KOG0268|consen 134 WKIDG--PPLHTIL-GKSVYLGIDHHRK-NSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCA 207 (433)
T ss_pred eeccC--Ccceeee-ccccccccccccc-cccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeec
Confidence 99985 3566665 3455667776554 346778864 59999998888887765 3467899999988777666
Q ss_pred cCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCC
Q 003840 657 AENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTY 735 (792)
Q Consensus 657 ~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg 735 (792)
+|+.|.+||++...++..+. -...-+.|||+|++-.|+++++| .++.||++... ..+....+|.+.+.++.|+|.|
T Consensus 208 sDrsIvLyD~R~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~--~p~~v~~dhvsAV~dVdfsptG 284 (433)
T KOG0268|consen 208 SDRSIVLYDLRQASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLS--RPLNVHKDHVSAVMDVDFSPTG 284 (433)
T ss_pred cCCceEEEecccCCccceee-eeccccceecCccccceeeccccccceehhhhhhc--ccchhhcccceeEEEeccCCCc
Confidence 79999999999998776554 22345689999988889999999 99999998653 5677788899999999999999
Q ss_pred CEEEEEEcCCeEEEEECCCCcEEEEc--ccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003840 736 PSLLVIGCYQSLELWNMSENKTMTLT--AHEGLIAALAVSTETGYVASASHDKFVKLWK 792 (792)
Q Consensus 736 ~~L~sgs~dg~I~IwDl~~~~~~~~~--~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd 792 (792)
..|++|+.|.+|+||.+..+....+. ..-..|.|+.|+.|.+||++||+|+.|++|+
T Consensus 285 ~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWk 343 (433)
T KOG0268|consen 285 QEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWK 343 (433)
T ss_pred chhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeee
Confidence 99999999999999999988765322 3345799999999999999999999999996
No 58
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=9.8e-28 Score=267.32 Aligned_cols=241 Identities=24% Similarity=0.418 Sum_probs=209.2
Q ss_pred eeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCC
Q 003840 507 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP 586 (792)
Q Consensus 507 ~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~ 586 (792)
.|.+|.++|..++|+|.+.++++|+.|.+|+||+.++.+++.++.+|.+.|..+.|++.-.+|+++|.|-+|+||+..+
T Consensus 46 rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqs- 124 (1202)
T KOG0292|consen 46 RFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQS- 124 (1202)
T ss_pred hhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccC-
Confidence 3567999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCee----------------------------E-EEee
Q 003840 587 GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC----------------------------T-RVFK 637 (792)
Q Consensus 587 ~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~----------------------------~-~~~~ 637 (792)
+.++..+++|...|.|..|+|.. .++++++-|-+||+||+...+. + ..++
T Consensus 125 r~~iavltGHnHYVMcAqFhptE-DlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLE 203 (1202)
T KOG0292|consen 125 RKCIAVLTGHNHYVMCAQFHPTE-DLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLE 203 (1202)
T ss_pred CceEEEEecCceEEEeeccCCcc-ceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeec
Confidence 88999999999999999999974 4788999999999999853210 1 1222
Q ss_pred ---CCeeEEEEecCCCEEEEEEcCCeEEEEECCCCe--EEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCC
Q 003840 638 ---GGTAQMRFQPHLGRYLAAAAENVVSILDAETQA--CRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGS 711 (792)
Q Consensus 638 ---~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~--~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~ 711 (792)
.+++-++|+|.-..+++|+.|..|++|.+...+ .+.+..+|-..|.|+-|+|.-++|++.++| .|+|||+...
T Consensus 204 GHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kR- 282 (1202)
T KOG0292|consen 204 GHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKR- 282 (1202)
T ss_pred ccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccc-
Confidence 246678899999999999999999999987654 345678899999999999999999999999 9999999765
Q ss_pred CcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 003840 712 EGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMS 753 (792)
Q Consensus 712 ~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~ 753 (792)
..+..+......++.++.+|..+.+++|. |+.+.||.++
T Consensus 283 --t~v~tfrrendRFW~laahP~lNLfAAgH-DsGm~VFkle 321 (1202)
T KOG0292|consen 283 --TSVQTFRRENDRFWILAAHPELNLFAAGH-DSGMIVFKLE 321 (1202)
T ss_pred --cceeeeeccCCeEEEEEecCCcceeeeec-CCceEEEEEc
Confidence 77778877888999999999998666554 4445555554
No 59
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=6.4e-28 Score=234.03 Aligned_cols=270 Identities=23% Similarity=0.352 Sum_probs=234.7
Q ss_pred CcceEEEEeCCCeeeecCCC---eeEeCCCcchhhcccccccCCCCCCceeeeccCCCCCCCCCCCcceeccCCcceeee
Q 003840 429 SKPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEA 505 (792)
Q Consensus 429 ~k~~l~~s~Dg~~~~ss~s~---~lWD~~tg~~~~~~~~~~~~g~~d~~v~~~l~~d~~~~~d~~~~~~d~~~~~~~~~~ 505 (792)
....+.|.-||.|.++.+++ +|||+..|. ++
T Consensus 19 aV~avryN~dGnY~ltcGsdrtvrLWNp~rg~----------------------------------------------li 52 (307)
T KOG0316|consen 19 AVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGA----------------------------------------------LI 52 (307)
T ss_pred ceEEEEEccCCCEEEEcCCCceEEeecccccc----------------------------------------------ee
Confidence 35578999999999998877 778876654 45
Q ss_pred eeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCC
Q 003840 506 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN 585 (792)
Q Consensus 506 ~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s 585 (792)
+++.+|...|..++.+.|...|++|+.|..|.+||+++|+.++.+.+|.+.|+.+.|+.+...+++|+.|.+|++||.++
T Consensus 53 ktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS 132 (307)
T KOG0316|consen 53 KTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRS 132 (307)
T ss_pred eeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEccc
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CC-ceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEe-eCCeeEEEEecCCCEEEEEEcCCeEEE
Q 003840 586 PG-YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF-KGGTAQMRFQPHLGRYLAAAAENVVSI 663 (792)
Q Consensus 586 ~~-~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~-~~~~~~v~~sp~~~~lla~s~dg~I~i 663 (792)
.. +++..+......|.+|.+. ++.|++|+.||+++.||++.|.....+ ..++++++|+++++..++++-|+.|++
T Consensus 133 ~s~ePiQildea~D~V~Si~v~---~heIvaGS~DGtvRtydiR~G~l~sDy~g~pit~vs~s~d~nc~La~~l~stlrL 209 (307)
T KOG0316|consen 133 RSFEPIQILDEAKDGVSSIDVA---EHEIVAGSVDGTVRTYDIRKGTLSSDYFGHPITSVSFSKDGNCSLASSLDSTLRL 209 (307)
T ss_pred CCCCccchhhhhcCceeEEEec---ccEEEeeccCCcEEEEEeecceeehhhcCCcceeEEecCCCCEEEEeeccceeee
Confidence 43 5778888888999999997 456779999999999999999887654 568899999999999999999999999
Q ss_pred EECCCCeEEEEecCCCCCe--EEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCc-eEEEEEeCCCCEEE
Q 003840 664 LDAETQACRLSLQGHTKPI--DSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNK-FHSCVFHPTYPSLL 739 (792)
Q Consensus 664 ~D~~t~~~~~~l~~h~~~V--~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~-i~si~fspdg~~L~ 739 (792)
.|-++++.+..+++|...- ...+++....++++|++| .|++||+... ..+..+..+... +.++.++|.-..|+
T Consensus 210 lDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~---~~~sk~~~~~~v~v~dl~~hp~~~~f~ 286 (307)
T KOG0316|consen 210 LDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDE---TQISKLSVVSTVIVTDLSCHPTMDDFI 286 (307)
T ss_pred cccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccc---eeeeeeccCCceeEEeeecccCcccee
Confidence 9999999999999987643 345677788899999999 9999999765 667777777666 89999999888787
Q ss_pred EEEcCCeEEEEE
Q 003840 740 VIGCYQSLELWN 751 (792)
Q Consensus 740 sgs~dg~I~IwD 751 (792)
++...+ +.+|-
T Consensus 287 ~A~~~~-~~~~~ 297 (307)
T KOG0316|consen 287 TATGHG-DLFWY 297 (307)
T ss_pred EecCCc-eecee
Confidence 776544 44443
No 60
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.96 E-value=6.5e-28 Score=248.20 Aligned_cols=277 Identities=21% Similarity=0.348 Sum_probs=233.5
Q ss_pred ecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCC---eEEEEeCCCcEEEEeCCC
Q 003840 509 RASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP---RLATSSFDKTVRVWDADN 585 (792)
Q Consensus 509 ~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~---~Lasgs~Dg~V~IWdl~s 585 (792)
..|.+.|.++... +++|++|++||.++|||.. |+....+.+|.+.|.+++|.-.+. .|++++.|.++++|.++.
T Consensus 102 ~~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~-Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~ 178 (423)
T KOG0313|consen 102 FLHDDWVSSVKGA--SKWILTGSYDGTSRIWDLK-GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNV 178 (423)
T ss_pred ccchhhhhhhccc--CceEEEeecCCeeEEEecC-CceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecC
Confidence 3688889888887 6799999999999999964 789999999999999988865333 599999999999999986
Q ss_pred CCce---eEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCe-------------------------eEEEee
Q 003840 586 PGYS---LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS-------------------------CTRVFK 637 (792)
Q Consensus 586 ~~~~---i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~-------------------------~~~~~~ 637 (792)
+... +....+|...|-+|...+++. .|++|+.|..|+||+..+.. .+..+.
T Consensus 179 ~~~~~~~~~~~~GHk~~V~sVsv~~sgt-r~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~ 257 (423)
T KOG0313|consen 179 GENKVKALKVCRGHKRSVDSVSVDSSGT-RFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLE 257 (423)
T ss_pred chhhhhHHhHhcccccceeEEEecCCCC-eEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEec
Confidence 4432 233448999999999999976 56699999999999932211 111122
Q ss_pred ---CCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCc
Q 003840 638 ---GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEG 713 (792)
Q Consensus 638 ---~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~ 713 (792)
..+..+.|++ ...+++++.|.+|++||++++..+.++.+ ...++|+.+++..++|++|+.| .|++||-+++...
T Consensus 258 GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs 335 (423)
T KOG0313|consen 258 GHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGS 335 (423)
T ss_pred ccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeec-CcceeEeecccccceeeecCCCCceeecCCCCCCCc
Confidence 3456678887 68899999999999999999998888774 5679999999999999999999 9999999998777
Q ss_pred ceEEEeecCCCceEEEEEeCCCC-EEEEEEcCCeEEEEECCCCc-E-EEEcccCCCeEEEEEeCCCCEEEEEeCCCcEEE
Q 003840 714 ECVHELSCNGNKFHSCVFHPTYP-SLLVIGCYQSLELWNMSENK-T-MTLTAHEGLIAALAVSTETGYVASASHDKFVKL 790 (792)
Q Consensus 714 ~~i~~~~~~~~~i~si~fspdg~-~L~sgs~dg~I~IwDl~~~~-~-~~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~I 790 (792)
.....+.+|.+.|.++.|+|... .|++++.|+++++||+++.+ . ..+.+|...|.++.|. ++.+|++||.|..|+|
T Consensus 336 ~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i 414 (423)
T KOG0313|consen 336 VVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLRI 414 (423)
T ss_pred eeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc-CCceEEeccCcceEEE
Confidence 77889999999999999999765 57788899999999999876 4 4888999999999996 5679999999999999
Q ss_pred eC
Q 003840 791 WK 792 (792)
Q Consensus 791 Wd 792 (792)
++
T Consensus 415 ~~ 416 (423)
T KOG0313|consen 415 FK 416 (423)
T ss_pred ec
Confidence 84
No 61
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=7.7e-29 Score=249.20 Aligned_cols=276 Identities=24% Similarity=0.425 Sum_probs=239.2
Q ss_pred eEEEEeCCCeeeecCCC---eeEeCCCcchhhcccccccCCCCCCceeeeccCCCCCCCCCCCcceeccCCcceeeeeee
Q 003840 432 LMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSV 508 (792)
Q Consensus 432 ~l~~s~Dg~~~~ss~s~---~lWD~~tg~~~~~~~~~~~~g~~d~~v~~~l~~d~~~~~d~~~~~~d~~~~~~~~~~~~l 508 (792)
+-.|||||.|+++++-+ .+||..+|++++++.....+ .|
T Consensus 218 cA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd--------------------------------------~f 259 (508)
T KOG0275|consen 218 CARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQD--------------------------------------NF 259 (508)
T ss_pred heeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhc--------------------------------------ce
Confidence 56899999999997665 89999999998876643222 34
Q ss_pred ecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEec-cCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCC
Q 003840 509 RASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE-EHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG 587 (792)
Q Consensus 509 ~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~-~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~ 587 (792)
.-+.+.|.|++||.|..+||+|+.||+|+||.+.+|.+++.+. .|...|+|+.|+.|+..+++++.|.+|+|.-+.+ +
T Consensus 260 MMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKS-G 338 (508)
T KOG0275|consen 260 MMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKS-G 338 (508)
T ss_pred eecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEecccc-c
Confidence 5677889999999999999999999999999999999999998 8999999999999999999999999999999998 8
Q ss_pred ceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeC-----CeeEEEEecCC-CEEEEEEcCCeE
Q 003840 588 YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG-----GTAQMRFQPHL-GRYLAAAAENVV 661 (792)
Q Consensus 588 ~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~-----~~~~v~~sp~~-~~lla~s~dg~I 661 (792)
++++.+.+|...|+...|.++|.+++ +++.||+|++|+.++.+|+.+|+. .+..+...|.+ ..++++...++|
T Consensus 339 K~LKEfrGHsSyvn~a~ft~dG~~ii-saSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv 417 (508)
T KOG0275|consen 339 KCLKEFRGHSSYVNEATFTDDGHHII-SASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTV 417 (508)
T ss_pred hhHHHhcCccccccceEEcCCCCeEE-EecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeE
Confidence 89999999999999999999988665 999999999999999999998874 34455555554 567778888999
Q ss_pred EEEECCCCeEEEEecC---CCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCE
Q 003840 662 SILDAETQACRLSLQG---HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPS 737 (792)
Q Consensus 662 ~i~D~~t~~~~~~l~~---h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~ 737 (792)
+|.++. +..++.+.. ..+...+.+.+|.|.++++.++| .++.|.+.++ +.-+.+..|...+..++-+|..+.
T Consensus 418 ~imn~q-GQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG---~LE~tl~VhEkdvIGl~HHPHqNl 493 (508)
T KOG0275|consen 418 YIMNMQ-GQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSG---KLERTLPVHEKDVIGLTHHPHQNL 493 (508)
T ss_pred EEEecc-ceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecC---ceeeeeecccccccccccCcccch
Confidence 999885 455666543 33456677899999999999999 8999999887 677788889999999999999999
Q ss_pred EEEEEcCCeEEEEE
Q 003840 738 LLVIGCYQSLELWN 751 (792)
Q Consensus 738 L~sgs~dg~I~IwD 751 (792)
|++-+.||.+++|.
T Consensus 494 lAsYsEDgllKLWk 507 (508)
T KOG0275|consen 494 LASYSEDGLLKLWK 507 (508)
T ss_pred hhhhcccchhhhcC
Confidence 99999999999995
No 62
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.96 E-value=1.2e-26 Score=282.37 Aligned_cols=238 Identities=18% Similarity=0.255 Sum_probs=199.6
Q ss_pred CCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECC-CCCeEEEEeCCCcEEEEeCCCCCce
Q 003840 512 TSKVICCHFSS-DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSP-SMPRLATSSFDKTVRVWDADNPGYS 589 (792)
Q Consensus 512 ~~~V~~lafsp-dg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fsp-dg~~Lasgs~Dg~V~IWdl~s~~~~ 589 (792)
...|.+++|++ ++.+||+++.||.|+|||+.+++.+..+.+|...|++++|+| ++.+|++|+.||+|+|||+.+ +..
T Consensus 532 ~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~-~~~ 610 (793)
T PLN00181 532 RSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQ-GVS 610 (793)
T ss_pred cCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCC-CcE
Confidence 45799999987 578999999999999999999999999999999999999997 788999999999999999987 566
Q ss_pred eEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCe-eEEEe---eCCeeEEEEecCCCEEEEEEcCCeEEEEE
Q 003840 590 LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS-CTRVF---KGGTAQMRFQPHLGRYLAAAAENVVSILD 665 (792)
Q Consensus 590 i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~-~~~~~---~~~~~~v~~sp~~~~lla~s~dg~I~i~D 665 (792)
+..+..+ ..|.++.|++....+|++|+.||.|++||++..+ .+..+ ...+..+.|. ++..+++++.|+.|++||
T Consensus 611 ~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd 688 (793)
T PLN00181 611 IGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWD 688 (793)
T ss_pred EEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEe
Confidence 6666644 6799999976656678899999999999998765 33333 3456778886 678999999999999999
Q ss_pred CCC------CeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcce--------E--EEeecCCCceEE
Q 003840 666 AET------QACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGEC--------V--HELSCNGNKFHS 728 (792)
Q Consensus 666 ~~t------~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~--------i--~~~~~~~~~i~s 728 (792)
++. ..++..+.+|...+.+++|++++.+|++|+.| .|++|+......... + .....+...|.+
T Consensus 689 ~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~ 768 (793)
T PLN00181 689 LSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISS 768 (793)
T ss_pred CCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEE
Confidence 974 35778899999999999999999999999999 999999865421100 0 011234456999
Q ss_pred EEEeCCCCEEEEEEcCCeEEEEEC
Q 003840 729 CVFHPTYPSLLVIGCYQSLELWNM 752 (792)
Q Consensus 729 i~fspdg~~L~sgs~dg~I~IwDl 752 (792)
++|++++..|++++.+|.|+||++
T Consensus 769 v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 769 VCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EEEcCCCCeEEEecCCCcEEEEec
Confidence 999999999999999999999996
No 63
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=4.4e-27 Score=232.82 Aligned_cols=262 Identities=23% Similarity=0.368 Sum_probs=215.7
Q ss_pred CCCCCCCcceeccCCcceeeeeee-ecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECC--CCceeEEeccCCCCEEEEE
Q 003840 485 DPRDAGGRGMDVSQGFSFKEANSV-RASTSKVICCHFSSDGKLLATGGHDKKAVLWHTD--TLKSKTNLEEHSSLITDVR 561 (792)
Q Consensus 485 ~~~d~~~~~~d~~~~~~~~~~~~l-~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~--t~~~~~~l~~h~~~V~~i~ 561 (792)
.+.|..+++|+...+.++.+...+ .+|+..|..++|+|.|++||+|+.|.++.||.-. +.+++.++++|...|.|++
T Consensus 33 cg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Va 112 (312)
T KOG0645|consen 33 CGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVA 112 (312)
T ss_pred ecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEE
Confidence 445667778887766667777666 4899999999999999999999999999999865 4578899999999999999
Q ss_pred ECCCCCeEEEEeCCCcEEEEeCCCC--CceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcC-C--CeeEEEe
Q 003840 562 FSPSMPRLATSSFDKTVRVWDADNP--GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN-N--GSCTRVF 636 (792)
Q Consensus 562 fspdg~~Lasgs~Dg~V~IWdl~s~--~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~-~--~~~~~~~ 636 (792)
|+++|.+||+++.|+.|-||.+..+ -.++..+..|...|..+.|||.. .||++++.|.+|++|+-. . -.++..+
T Consensus 113 ws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~-dlL~S~SYDnTIk~~~~~~dddW~c~~tl 191 (312)
T KOG0645|consen 113 WSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTE-DLLFSCSYDNTIKVYRDEDDDDWECVQTL 191 (312)
T ss_pred EcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCc-ceeEEeccCCeEEEEeecCCCCeeEEEEe
Confidence 9999999999999999999999843 35678889999999999999985 478899999999999877 2 3466666
Q ss_pred eCC---eeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCC
Q 003840 637 KGG---TAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSE 712 (792)
Q Consensus 637 ~~~---~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~ 712 (792)
.++ +.++.|.+.+.++++++.|++|+||-..+.-. ..|...+..+.|. ...|++++.| .|++|.......
T Consensus 192 ~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~~----~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d 265 (312)
T KOG0645|consen 192 DGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDLS----GMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPD 265 (312)
T ss_pred cCccceEEEEEecCCCceEEEecCCcceEeeeeccCcc----hhcccceEeeeec--ccceEeccCCCEEEEEEecCCCC
Confidence 654 56789999999999999999999998663211 1277889999998 5578888877 999998764311
Q ss_pred ---cceE-EEeecCCCceEEEEEeCC-CCEEEEEEcCCeEEEEECC
Q 003840 713 ---GECV-HELSCNGNKFHSCVFHPT-YPSLLVIGCYQSLELWNMS 753 (792)
Q Consensus 713 ---~~~i-~~~~~~~~~i~si~fspd-g~~L~sgs~dg~I~IwDl~ 753 (792)
.+.+ .....|+..|+++.|.|. .+.|++++.||.|++|.+.
T Consensus 266 ~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 266 EPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred CchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 1222 244567889999999995 6789999999999999874
No 64
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.2e-27 Score=268.73 Aligned_cols=242 Identities=22% Similarity=0.335 Sum_probs=199.2
Q ss_pred eeee-cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC-----------------------------------------
Q 003840 506 NSVR-ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT----------------------------------------- 543 (792)
Q Consensus 506 ~~l~-~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t----------------------------------------- 543 (792)
..+. +|.+.|+|+.||+||+|||+||.||.|+||.+..
T Consensus 260 Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~ 339 (712)
T KOG0283|consen 260 QEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSS 339 (712)
T ss_pred eccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccc
Confidence 3445 8999999999999999999999999999997643
Q ss_pred -------------------CceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEE
Q 003840 544 -------------------LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLD 604 (792)
Q Consensus 544 -------------------~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~ 604 (792)
.+++..+.+|.+.|.+|.|+.++ +|++++.|++||+|++.. ..++..|. |...|+||+
T Consensus 340 ~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~-~~CL~~F~-HndfVTcVa 416 (712)
T KOG0283|consen 340 RKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGR-KECLKVFS-HNDFVTCVA 416 (712)
T ss_pred ccccCCccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCC-cceeeEEe-cCCeeEEEE
Confidence 01122345799999999999876 999999999999999997 77888876 999999999
Q ss_pred EcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEe--eCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecC--C--
Q 003840 605 FHPNKDDLICSCDGDGEIRYWSINNGSCTRVF--KGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQG--H-- 678 (792)
Q Consensus 605 fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~--~~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~--h-- 678 (792)
|+|.++++|++|+-||.||||+|...+++.-. +.-++.++|.|+|...++|+.+|.+++|+++..+....+.- |
T Consensus 417 FnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~ 496 (712)
T KOG0283|consen 417 FNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNK 496 (712)
T ss_pred ecccCCCcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccC
Confidence 99999999999999999999999988877654 45688999999999999999999999999998876654321 1
Q ss_pred ----CCCeEEEEEcCCC-CEEEEEeCC-eEEEEECCCCCCcceEEEeecCC--CceEEEEEeCCCCEEEEEEcCCeEEEE
Q 003840 679 ----TKPIDSVCWDPSG-ELLASVSED-SVRVWTVGSGSEGECVHELSCNG--NKFHSCVFHPTYPSLLVIGCYQSLELW 750 (792)
Q Consensus 679 ----~~~V~sv~~spdg-~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~--~~i~si~fspdg~~L~sgs~dg~I~Iw 750 (792)
...|+.+.|.|.. ..|++.+.| .|+|||.+.. ..+..+++.. ..-....|+.||++|++++.|..|+||
T Consensus 497 Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~---~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW 573 (712)
T KOG0283|consen 497 KKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDK---DLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIW 573 (712)
T ss_pred ccccCceeeeeEecCCCCCeEEEecCCCceEEEeccch---hhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEE
Confidence 2279999999743 345556666 9999999665 4444444432 234567889999999999999999999
Q ss_pred ECC
Q 003840 751 NMS 753 (792)
Q Consensus 751 Dl~ 753 (792)
++.
T Consensus 574 ~~~ 576 (712)
T KOG0283|consen 574 KND 576 (712)
T ss_pred eCC
Confidence 973
No 65
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.96 E-value=8.4e-29 Score=261.76 Aligned_cols=246 Identities=18% Similarity=0.312 Sum_probs=216.8
Q ss_pred CceeEEeccCCCCEEEEEECC-CCCeEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcE
Q 003840 544 LKSKTNLEEHSSLITDVRFSP-SMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEI 622 (792)
Q Consensus 544 ~~~~~~l~~h~~~V~~i~fsp-dg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I 622 (792)
.+.+.++.+|...|+++.|.| .+.+|++++.|+.|+||++...+.++++|.+|..+|.+++|+.++..++ +++.|+.|
T Consensus 204 kk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fL-S~sfD~~l 282 (503)
T KOG0282|consen 204 KKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFL-SASFDRFL 282 (503)
T ss_pred HhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeee-eeecceee
Confidence 356778889999999999999 8889999999999999999998999999999999999999999988766 99999999
Q ss_pred EEEEcCCCeeEEEeeC--CeeEEEEecCC-CEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeC
Q 003840 623 RYWSINNGSCTRVFKG--GTAQMRFQPHL-GRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSE 699 (792)
Q Consensus 623 ~iwdl~~~~~~~~~~~--~~~~v~~sp~~-~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~ 699 (792)
++||+++|.++..|.. ...++.|.|++ +.+++|+.|+.|+.||+++++.+..+..|-+.|..|.|-++|+++++.++
T Consensus 283 KlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSD 362 (503)
T KOG0282|consen 283 KLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSD 362 (503)
T ss_pred eeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeecc
Confidence 9999999999998864 56889999999 78889999999999999999999999999999999999999999999999
Q ss_pred C-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE----EEcccC--CCeEEEEE
Q 003840 700 D-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM----TLTAHE--GLIAALAV 772 (792)
Q Consensus 700 d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~----~~~~h~--~~V~sl~f 772 (792)
| .++||+.+.+-..+.+.. .+.....+|..+|.++++++=+.|+.|.+|.+...-.+ .+.+|. +.-..+.|
T Consensus 363 dks~riWe~~~~v~ik~i~~--~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~f 440 (503)
T KOG0282|consen 363 DKSVRIWENRIPVPIKNIAD--PEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDF 440 (503)
T ss_pred CccEEEEEcCCCccchhhcc--hhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEE
Confidence 9 999999987643333332 23345678899999999999999999999987654333 566664 45667899
Q ss_pred eCCCCEEEEEeCCCcEEEeC
Q 003840 773 STETGYVASASHDKFVKLWK 792 (792)
Q Consensus 773 spdg~~LaSgs~DG~I~IWd 792 (792)
||||++|++|+.||.|.+||
T Consensus 441 SpDG~~l~SGdsdG~v~~wd 460 (503)
T KOG0282|consen 441 SPDGRTLCSGDSDGKVNFWD 460 (503)
T ss_pred cCCCCeEEeecCCccEEEee
Confidence 99999999999999999997
No 66
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=4.7e-27 Score=249.11 Aligned_cols=275 Identities=19% Similarity=0.289 Sum_probs=238.6
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeE
Q 003840 512 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLR 591 (792)
Q Consensus 512 ~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~ 591 (792)
.+.|.+++|+|...+=++....-.|.||+..+...++++......|.+++|..||++|++|...|.|+|||+.+ ...++
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~-r~iLR 104 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKS-RVILR 104 (487)
T ss_pred cCcceeEecCCCCCCceEEecccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEecccc-HHHHH
Confidence 46799999999554322233356799999999888888888899999999999999999999999999999654 67889
Q ss_pred EecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeC---CeeEEEEecCCC-EEEEEEcCCeEEEEECC
Q 003840 592 TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLG-RYLAAAAENVVSILDAE 667 (792)
Q Consensus 592 ~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~sp~~~-~lla~s~dg~I~i~D~~ 667 (792)
.+.+|..+|..+.|+|.++.++++|++|+.+++||+.+......+.+ .+.+.+|+|-.+ .+++|+.||.|++||++
T Consensus 105 ~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR 184 (487)
T KOG0310|consen 105 QLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTR 184 (487)
T ss_pred HHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEec
Confidence 99999999999999999999999999999999999999887545544 467788888877 46677889999999999
Q ss_pred CC-eEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCe
Q 003840 668 TQ-ACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQS 746 (792)
Q Consensus 668 t~-~~~~~l~~h~~~V~sv~~spdg~~Las~s~d~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~ 746 (792)
.. ..+.++. |..+|.++++-|.|..|++++...|+|||+.++. ..+.....|...|+|+++..++..|++++-|+.
T Consensus 185 ~~~~~v~eln-hg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~--qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~ 261 (487)
T KOG0310|consen 185 SLTSRVVELN-HGCPVESVLALPSGSLIASAGGNSVKVWDLTTGG--QLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRH 261 (487)
T ss_pred cCCceeEEec-CCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCc--eehhhhhcccceEEEEEeecCCceEeecccccc
Confidence 88 5556655 9999999999999999999999999999998764 445555568899999999999999999999999
Q ss_pred EEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEeCCCcEEE
Q 003840 747 LELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKL 790 (792)
Q Consensus 747 I~IwDl~~~~~~~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~I 790 (792)
|++||+.+.+.+.-....++|.+++.+||+..++.|..||.+.+
T Consensus 262 VKVfd~t~~Kvv~s~~~~~pvLsiavs~dd~t~viGmsnGlv~~ 305 (487)
T KOG0310|consen 262 VKVFDTTNYKVVHSWKYPGPVLSIAVSPDDQTVVIGMSNGLVSI 305 (487)
T ss_pred eEEEEccceEEEEeeecccceeeEEecCCCceEEEecccceeee
Confidence 99999988888877788899999999999999999999998754
No 67
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.96 E-value=7.3e-27 Score=243.73 Aligned_cols=274 Identities=24% Similarity=0.395 Sum_probs=240.6
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEE
Q 003840 513 SKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRT 592 (792)
Q Consensus 513 ~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~ 592 (792)
..|+++...+....+++|+.|..+.++|......+.++++|...|+.+.|+++...+++++.|..|+||.... ......
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~-~s~~~~ 298 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPL-SSEPTS 298 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeecccc-ccCccc
Confidence 4578888888777999999999999999999999999999999999999999999999999999999999987 446667
Q ss_pred ecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeC-----CeeEEEEecCCCEEEEEEcCCeEEEEECC
Q 003840 593 FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG-----GTAQMRFQPHLGRYLAAAAENVVSILDAE 667 (792)
Q Consensus 593 ~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~-----~~~~v~~sp~~~~lla~s~dg~I~i~D~~ 667 (792)
...|..+|+.+..+|.|++++ +++.|++..+.|++++.++..... ...+..|+|||-.|.+|..|+.|+|||+.
T Consensus 299 ~~~h~~~V~~ls~h~tgeYll-sAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlk 377 (506)
T KOG0289|consen 299 SRPHEEPVTGLSLHPTGEYLL-SASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLK 377 (506)
T ss_pred cccccccceeeeeccCCcEEE-EecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcC
Confidence 778999999999999988655 899999999999999998876654 36788999999999999999999999999
Q ss_pred CCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeec-CCCceEEEEEeCCCCEEEEEEcCC
Q 003840 668 TQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSC-NGNKFHSCVFHPTYPSLLVIGCYQ 745 (792)
Q Consensus 668 t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~-~~~~i~si~fspdg~~L~sgs~dg 745 (792)
+...+..|.+|.++|..|+|+.+|.||+++++| .|++||++..+. +..+.. ....+.++.|...|.+|++++.+=
T Consensus 378 s~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n---~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l 454 (506)
T KOG0289|consen 378 SQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKN---FKTIQLDEKKEVNSLSFDQSGTYLGIAGSDL 454 (506)
T ss_pred CccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcc---cceeeccccccceeEEEcCCCCeEEeeccee
Confidence 999999999999999999999999999999999 799999987643 333332 223699999999999999998877
Q ss_pred eEEEEECCCCcE--E-EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEe
Q 003840 746 SLELWNMSENKT--M-TLTAHEGLIAALAVSTETGYVASASHDKFVKLW 791 (792)
Q Consensus 746 ~I~IwDl~~~~~--~-~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IW 791 (792)
.|++++-.+... + .+..|.+..+++.|.....+|+++|.|..++|+
T Consensus 455 ~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~ 503 (506)
T KOG0289|consen 455 QVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLY 503 (506)
T ss_pred EEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEe
Confidence 777777555433 2 566788899999999999999999999999887
No 68
>PTZ00420 coronin; Provisional
Probab=99.95 E-value=7.9e-26 Score=258.26 Aligned_cols=247 Identities=15% Similarity=0.189 Sum_probs=199.7
Q ss_pred EeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCC-CCeEEEEeCCCcEEEEeCCCCCc-------eeEEecccCCCeE
Q 003840 530 GGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPS-MPRLATSSFDKTVRVWDADNPGY-------SLRTFMGHSASVM 601 (792)
Q Consensus 530 gs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspd-g~~Lasgs~Dg~V~IWdl~s~~~-------~i~~~~~h~~~V~ 601 (792)
|+.++.|++|+......+..+.+|...|.+++|+|+ +.+|++|+.||+|+|||+.+... .+..+.+|...|.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~ 129 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence 667889999999888888899999999999999996 78999999999999999986332 3456788999999
Q ss_pred EEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee--CCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCC
Q 003840 602 SLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK--GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHT 679 (792)
Q Consensus 602 sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~--~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~ 679 (792)
+++|+|++..++++++.|++|+|||++++..+..+. ..+.++.|++++..+++++.|+.|+|||+++++.+..+.+|.
T Consensus 130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~ 209 (568)
T PTZ00420 130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHD 209 (568)
T ss_pred EEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEeccc
Confidence 999999988888899999999999999988765543 457889999999999999999999999999999999999998
Q ss_pred CCeEE-----EEEcCCCCEEEEEeCC-----eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEE
Q 003840 680 KPIDS-----VCWDPSGELLASVSED-----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLEL 749 (792)
Q Consensus 680 ~~V~s-----v~~spdg~~Las~s~d-----~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~I 749 (792)
+.+.+ ..|++++.+|++++.+ .|+|||++..........+..+...+......+++.++++|+.|+.|++
T Consensus 210 g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~ 289 (568)
T PTZ00420 210 GGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRY 289 (568)
T ss_pred CCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEE
Confidence 76543 2345888888887755 5999999864332333333333344444444556888999999999999
Q ss_pred EECCCCcEEEE--cccCCCeEEEEEeCCC
Q 003840 750 WNMSENKTMTL--TAHEGLIAALAVSTET 776 (792)
Q Consensus 750 wDl~~~~~~~~--~~h~~~V~sl~fspdg 776 (792)
|++..+....+ ..+..++.+++|.|+.
T Consensus 290 ~e~~~~~~~~l~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 290 YQHSLGSIRKVNEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred EEccCCcEEeecccccCCCccceEEcccc
Confidence 99988765433 3466788899999965
No 69
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.95 E-value=2.2e-26 Score=261.96 Aligned_cols=268 Identities=26% Similarity=0.474 Sum_probs=235.8
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEE-eccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCc
Q 003840 510 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTN-LEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGY 588 (792)
Q Consensus 510 ~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~-l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~ 588 (792)
.|...|.|..|. ..++++++.|.+|.+||..++..+.. +.+|.+.|++++|...+.+|++|+.|.+++|||+.+ +.
T Consensus 206 ~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~s-g~ 282 (537)
T KOG0274|consen 206 TDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCST-GE 282 (537)
T ss_pred cCcchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCC-Cc
Confidence 367788899998 45899999999999999999999888 999999999999998788999999999999999887 89
Q ss_pred eeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCC---eeEEEEecCCCEEEEEEcCCeEEEEE
Q 003840 589 SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---TAQMRFQPHLGRYLAAAAENVVSILD 665 (792)
Q Consensus 589 ~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~---~~~v~~sp~~~~lla~s~dg~I~i~D 665 (792)
+...+.+|...|.++...+ .++++|+.|.+|++|++.++.++..+.++ +.++.+. ++.+++|+.|+.|.+||
T Consensus 283 C~~~l~gh~stv~~~~~~~---~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~ 357 (537)
T KOG0274|consen 283 CTHSLQGHTSSVRCLTIDP---FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWD 357 (537)
T ss_pred EEEEecCCCceEEEEEccC---ceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEE
Confidence 9999999999999999874 46778999999999999999999988753 3444444 88999999999999999
Q ss_pred CCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcC
Q 003840 666 AETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY 744 (792)
Q Consensus 666 ~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~d 744 (792)
+.+++++..+.+|...|.++.+... .++++|+.| .|++||+++.. +|+..+..|...+..+.+ .+++|++++.|
T Consensus 358 ~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~--~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD 432 (537)
T KOG0274|consen 358 PRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKR--KCIHTLQGHTSLVSSLLL--RDNFLVSSSAD 432 (537)
T ss_pred hhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchh--hhhhhhcCCccccccccc--ccceeEecccc
Confidence 9999999999999999999988766 899999999 89999998654 788888888888755544 56789999999
Q ss_pred CeEEEEECCCCcEE-EEcc-cCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003840 745 QSLELWNMSENKTM-TLTA-HEGLIAALAVSTETGYVASASHDKFVKLWK 792 (792)
Q Consensus 745 g~I~IwDl~~~~~~-~~~~-h~~~V~sl~fspdg~~LaSgs~DG~I~IWd 792 (792)
+.|++||..+++++ .+.+ |...|.++++. ...+++++.||.+++||
T Consensus 433 ~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~d 480 (537)
T KOG0274|consen 433 GTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWD 480 (537)
T ss_pred ccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEe
Confidence 99999999999988 5555 56889988886 45788899999999997
No 70
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.95 E-value=1.1e-27 Score=234.19 Aligned_cols=249 Identities=19% Similarity=0.271 Sum_probs=221.9
Q ss_pred eeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeC
Q 003840 504 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDA 583 (792)
Q Consensus 504 ~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl 583 (792)
-+.+|.+|.+.|+..+++.+..+.|+++.|-+.+|||.-+|..+..+. |...|..++|+.|.++|++|+.++.+||||+
T Consensus 51 wigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdl 129 (334)
T KOG0278|consen 51 WIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDL 129 (334)
T ss_pred cEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhc
Confidence 356789999999999999999999999999999999999999998886 8889999999999999999999999999999
Q ss_pred CCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEe--eCCeeEEEEecCCCEEEEEEcCCeE
Q 003840 584 DNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF--KGGTAQMRFQPHLGRYLAAAAENVV 661 (792)
Q Consensus 584 ~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~--~~~~~~v~~sp~~~~lla~s~dg~I 661 (792)
+.+..+...+.+|.+.|..+.|+..+..+| ++..|++||+||.++++.+..+ +.++.++.+++++ .+++.+..+.|
T Consensus 130 n~p~App~E~~ghtg~Ir~v~wc~eD~~iL-SSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG-~ilTia~gssV 207 (334)
T KOG0278|consen 130 NRPKAPPKEISGHTGGIRTVLWCHEDKCIL-SSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDG-RILTIAYGSSV 207 (334)
T ss_pred cCCCCCchhhcCCCCcceeEEEeccCceEE-eeccCCceEEEEeccCcEEEEEecCCCCcceeeccCC-CEEEEecCcee
Confidence 998888999999999999999998766555 7789999999999999988765 5678899999984 56677777899
Q ss_pred EEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEE
Q 003840 662 SILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLV 740 (792)
Q Consensus 662 ~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~s 740 (792)
.+||..+..+++.++ -...|.+..++|+..++++|++| .++.||+.++.+..+. .++|.++|.++.|+|+|...++
T Consensus 208 ~Fwdaksf~~lKs~k-~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~--nkgh~gpVhcVrFSPdGE~yAs 284 (334)
T KOG0278|consen 208 KFWDAKSFGLLKSYK-MPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSY--NKGHFGPVHCVRFSPDGELYAS 284 (334)
T ss_pred EEeccccccceeecc-CccccccccccCCCceEEecCcceEEEEEeccCCceeeec--ccCCCCceEEEEECCCCceeec
Confidence 999999999888776 45679999999999999999999 9999999998543331 4789999999999999999999
Q ss_pred EEcCCeEEEEECCCCcEE
Q 003840 741 IGCYQSLELWNMSENKTM 758 (792)
Q Consensus 741 gs~dg~I~IwDl~~~~~~ 758 (792)
|+.||+|+||-+..++..
T Consensus 285 GSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 285 GSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred cCCCceEEEEEecCCCch
Confidence 999999999998766544
No 71
>PTZ00421 coronin; Provisional
Probab=99.95 E-value=1.4e-25 Score=254.88 Aligned_cols=263 Identities=16% Similarity=0.227 Sum_probs=206.1
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC----------cee---EEeccCCCCEEEEEECC-CCCeEEEEeCCCc
Q 003840 512 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL----------KSK---TNLEEHSSLITDVRFSP-SMPRLATSSFDKT 577 (792)
Q Consensus 512 ~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~----------~~~---~~l~~h~~~V~~i~fsp-dg~~Lasgs~Dg~ 577 (792)
...|....+++|+..+++++.+..+..|+...+ +.. ..+.+|.+.|++++|+| ++.+|++|+.|++
T Consensus 20 ~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~Dgt 99 (493)
T PTZ00421 20 FLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGT 99 (493)
T ss_pred eeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCE
Confidence 344556666667666666666666666664433 211 24678999999999999 8889999999999
Q ss_pred EEEEeCCCCC------ceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeC---CeeEEEEecC
Q 003840 578 VRVWDADNPG------YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPH 648 (792)
Q Consensus 578 V~IWdl~s~~------~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~sp~ 648 (792)
|+|||+.+.+ ..+..+.+|...|.+|+|+|++..+|++++.|++|+|||+++++.+..+.. .+.+++|+++
T Consensus 100 IkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spd 179 (493)
T PTZ00421 100 IMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLD 179 (493)
T ss_pred EEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECC
Confidence 9999997643 356788899999999999999877888999999999999999988877653 5788999999
Q ss_pred CCEEEEEEcCCeEEEEECCCCeEEEEecCCCCC-eEEEEEcCCCCEEEEEe----CC-eEEEEECCCCCCcceEEEeec-
Q 003840 649 LGRYLAAAAENVVSILDAETQACRLSLQGHTKP-IDSVCWDPSGELLASVS----ED-SVRVWTVGSGSEGECVHELSC- 721 (792)
Q Consensus 649 ~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~-V~sv~~spdg~~Las~s----~d-~I~IwDl~s~~~~~~i~~~~~- 721 (792)
+..+++++.|+.|+|||+++++.+..+.+|... +..+.|.+++.+|++++ .| .|++||+++... .+.....
T Consensus 180 G~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~--p~~~~~~d 257 (493)
T PTZ00421 180 GSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMAS--PYSTVDLD 257 (493)
T ss_pred CCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCC--ceeEeccC
Confidence 999999999999999999999999999888765 44678999888777654 24 899999986542 3333322
Q ss_pred CCCceEEEEEeCCCCEEEEEE-cCCeEEEEECCCCcEEEE--cccCCCeEEEEEeCCC
Q 003840 722 NGNKFHSCVFHPTYPSLLVIG-CYQSLELWNMSENKTMTL--TAHEGLIAALAVSTET 776 (792)
Q Consensus 722 ~~~~i~si~fspdg~~L~sgs-~dg~I~IwDl~~~~~~~~--~~h~~~V~sl~fspdg 776 (792)
....+..+.|++++.+|++++ .|+.|++||+.+++.+.. ..+...+.+++|.|.-
T Consensus 258 ~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk~ 315 (493)
T PTZ00421 258 QSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPKW 315 (493)
T ss_pred CCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEecccc
Confidence 234566678999999999888 499999999999887633 2455677888888753
No 72
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.95 E-value=3e-26 Score=263.42 Aligned_cols=278 Identities=20% Similarity=0.335 Sum_probs=233.5
Q ss_pred cCCCCeEEEEEcCCCCEEEEEe--CCCeEEEEECCC------------CceeEEeccCCCCEEEEEECCCCCeEEEEeCC
Q 003840 510 ASTSKVICCHFSSDGKLLATGG--HDKKAVLWHTDT------------LKSKTNLEEHSSLITDVRFSPSMPRLATSSFD 575 (792)
Q Consensus 510 ~H~~~V~~lafspdg~~Lasgs--~Dg~I~vWdl~t------------~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~D 575 (792)
.+...|.+++.+|||..+|+|+ .||.++||+.+. .+.+.....|.+.|+|+.|++||.+||+|++|
T Consensus 11 H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD 90 (942)
T KOG0973|consen 11 HNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDD 90 (942)
T ss_pred cCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCc
Confidence 3455689999999999999999 999999998642 23445667899999999999999999999999
Q ss_pred CcEEEEeCCC------C-----------CceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeC
Q 003840 576 KTVRVWDADN------P-----------GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG 638 (792)
Q Consensus 576 g~V~IWdl~s------~-----------~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~ 638 (792)
+.|.||+... . .+.+..+.+|...|.+++|+|++ .++++++.|++|.|||..+.++++++++
T Consensus 91 ~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~-~~lvS~s~DnsViiwn~~tF~~~~vl~~ 169 (942)
T KOG0973|consen 91 RLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDD-SLLVSVSLDNSVIIWNAKTFELLKVLRG 169 (942)
T ss_pred ceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCc-cEEEEecccceEEEEccccceeeeeeec
Confidence 9999999872 0 13567888999999999999985 4778999999999999999998888876
Q ss_pred C---eeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCC------CCeEEEEEcCCCCEEEEEeC----C-eEEE
Q 003840 639 G---TAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHT------KPIDSVCWDPSGELLASVSE----D-SVRV 704 (792)
Q Consensus 639 ~---~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~------~~V~sv~~spdg~~Las~s~----d-~I~I 704 (792)
+ +..+.|.|-|.++++-+.|++|+||++.+..+.+.+.++. ..+..+.|+|||.+|++... . ++.|
T Consensus 170 H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~I 249 (942)
T KOG0973|consen 170 HQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAI 249 (942)
T ss_pred ccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEE
Confidence 4 5678999999999999999999999988877776665532 34788999999999998642 2 7888
Q ss_pred EECCCCCCcceEEEeecCCCceEEEEEeCC-----CC------------EEEEEEcCCeEEEEECCCCcEEEE--cccCC
Q 003840 705 WTVGSGSEGECVHELSCNGNKFHSCVFHPT-----YP------------SLLVIGCYQSLELWNMSENKTMTL--TAHEG 765 (792)
Q Consensus 705 wDl~s~~~~~~i~~~~~~~~~i~si~fspd-----g~------------~L~sgs~dg~I~IwDl~~~~~~~~--~~h~~ 765 (792)
.+-.+ ++.-..+.+|..++.+++|+|. .. .+++|+.|++|.||.....+++.+ .-...
T Consensus 250 ieR~t---Wk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~ 326 (942)
T KOG0973|consen 250 IERGT---WKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNK 326 (942)
T ss_pred EecCC---ceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcC
Confidence 88644 3677788899999999999872 11 578899999999999988777733 33467
Q ss_pred CeEEEEEeCCCCEEEEEeCCCcEEEe
Q 003840 766 LIAALAVSTETGYVASASHDKFVKLW 791 (792)
Q Consensus 766 ~V~sl~fspdg~~LaSgs~DG~I~IW 791 (792)
.|.+++|+|||-.|+.||.||+|.++
T Consensus 327 SI~DmsWspdG~~LfacS~DGtV~~i 352 (942)
T KOG0973|consen 327 SIVDMSWSPDGFSLFACSLDGTVALI 352 (942)
T ss_pred ceeeeeEcCCCCeEEEEecCCeEEEE
Confidence 89999999999999999999999875
No 73
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=3.5e-26 Score=251.53 Aligned_cols=266 Identities=22% Similarity=0.426 Sum_probs=227.9
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEecc-
Q 003840 517 CCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMG- 595 (792)
Q Consensus 517 ~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~- 595 (792)
-+.|+ ..+.||+|. ...|++|+..++........+...|+++.|+++|.+|++|..+|.|.|||..+ .+.++.+.+
T Consensus 182 lldWs-s~n~laVal-g~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~-~k~~~~~~~~ 258 (484)
T KOG0305|consen 182 LLDWS-SANVLAVAL-GQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKE-QKKTRTLRGS 258 (484)
T ss_pred Hhhcc-cCCeEEEEe-cceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhh-ccccccccCC
Confidence 36677 344677764 55899999999987777776689999999999999999999999999999987 566777777
Q ss_pred cCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEE----eeCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeE
Q 003840 596 HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV----FKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQAC 671 (792)
Q Consensus 596 h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~----~~~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~ 671 (792)
|...|-+++|. ..++.+|+.|+.|.++|++....... +...+..+.|++++.+++.|+.|+.+.|||.....+
T Consensus 259 h~~rvg~laW~---~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p 335 (484)
T KOG0305|consen 259 HASRVGSLAWN---SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEP 335 (484)
T ss_pred cCceeEEEecc---CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccc
Confidence 99999999998 44788999999999999998765443 334566788999999999999999999999998899
Q ss_pred EEEecCCCCCeEEEEEcC-CCCEEEEEe--CC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEc--CC
Q 003840 672 RLSLQGHTKPIDSVCWDP-SGELLASVS--ED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGC--YQ 745 (792)
Q Consensus 672 ~~~l~~h~~~V~sv~~sp-dg~~Las~s--~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~--dg 745 (792)
+..+..|...|.+++|+| ...+||+|+ .| +|++||+.++ ..+..+. ....|.++.|++..+.|+++.. ++
T Consensus 336 ~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g---~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n 411 (484)
T KOG0305|consen 336 KFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTG---ARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSEN 411 (484)
T ss_pred cEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCC---cEecccc-cCCceeeEEEcCCCCEEEEecCCCCC
Confidence 999999999999999999 556888765 45 9999999877 4454443 4678999999999988877654 46
Q ss_pred eEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003840 746 SLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 792 (792)
Q Consensus 746 ~I~IwDl~~~~~~-~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd 792 (792)
.|.||++.+.+.+ .+.+|...|..++++|||..|++|+.|.++++|+
T Consensus 412 ~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~ 459 (484)
T KOG0305|consen 412 QITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWN 459 (484)
T ss_pred cEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEecc
Confidence 8999999998777 7889999999999999999999999999999996
No 74
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=4.3e-26 Score=228.82 Aligned_cols=270 Identities=16% Similarity=0.262 Sum_probs=221.5
Q ss_pred cCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCC-Ccee-EEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCC
Q 003840 510 ASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTDT-LKSK-TNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP 586 (792)
Q Consensus 510 ~H~~~V~~lafsp-dg~~Lasgs~Dg~I~vWdl~t-~~~~-~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~ 586 (792)
.-.+.|.+|+||| ...+|++|+.||+|++|++.. +..+ +....|.++|.+++|+.||..+++|+.|+.+++||+.++
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~ 104 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG 104 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC
Confidence 3467799999999 666777999999999999986 3333 345579999999999999999999999999999999983
Q ss_pred CceeEEecccCCCeEEEEEcCCCC-eEEEEEeCCCcEEEEEcCCCeeEEEeeCCeeEEEEecCCCEEEEEEcCCeEEEEE
Q 003840 587 GYSLRTFMGHSASVMSLDFHPNKD-DLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILD 665 (792)
Q Consensus 587 ~~~i~~~~~h~~~V~sl~fspd~~-~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~lla~s~dg~I~i~D 665 (792)
-+..+..|.++|.++.|-+... .+|++|+.|.+|++||++....+..+.-+..+.+.......++++..+..|.+|+
T Consensus 105 --Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vyn 182 (347)
T KOG0647|consen 105 --QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYN 182 (347)
T ss_pred --CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEE
Confidence 5677788999999999976543 4788999999999999999999998888888877777778899999999999999
Q ss_pred CCCCeEEEEe-c-CCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCC---------CceEEEEEeC
Q 003840 666 AETQACRLSL-Q-GHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNG---------NKFHSCVFHP 733 (792)
Q Consensus 666 ~~t~~~~~~l-~-~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~---------~~i~si~fsp 733 (792)
++++...+.. . .-.-.++||+...|....+.|+-. .+.|..+..+.. +.-..+++|. ..|.+++|+|
T Consensus 183 L~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~-~~nFtFkCHR~~~~~~~~VYaVNsi~FhP 261 (347)
T KOG0647|consen 183 LENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNP-KDNFTFKCHRSTNSVNDDVYAVNSIAFHP 261 (347)
T ss_pred cCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCc-cCceeEEEeccCCCCCCceEEecceEeec
Confidence 9876433221 1 123458899988888877878766 888888876533 3334455554 2478899999
Q ss_pred CCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEE
Q 003840 734 TYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASA 782 (792)
Q Consensus 734 dg~~L~sgs~dg~I~IwDl~~~~~~-~~~~h~~~V~sl~fspdg~~LaSg 782 (792)
....|++++.||++.+||-.....+ ....|..+|+|.+|+.+|.++|-+
T Consensus 262 ~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 262 VHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYA 311 (347)
T ss_pred ccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEE
Confidence 9999999999999999998877665 667899999999999999988754
No 75
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1e-25 Score=238.97 Aligned_cols=274 Identities=22% Similarity=0.282 Sum_probs=224.9
Q ss_pred CcceEEEEeCCCee--e-ecCCCeeEeCCCcchhhcccccccCCCCCCceeeeccCCCCCCCCCCCcceeccCCcceeee
Q 003840 429 SKPLMMFGTDGAGT--L-TSPSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEA 505 (792)
Q Consensus 429 ~k~~l~~s~Dg~~~--~-ss~s~~lWD~~tg~~~~~~~~~~~~g~~d~~v~~~l~~d~~~~~d~~~~~~d~~~~~~~~~~ 505 (792)
+...++|||...+- + ++....||+..+...+..+.+|
T Consensus 28 ~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~~k~~srF---------------------------------------- 67 (487)
T KOG0310|consen 28 SVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSVRKTFSRF---------------------------------------- 67 (487)
T ss_pred cceeEecCCCCCCceEEecccEEEEEecchhhhhhhHHhh----------------------------------------
Confidence 34567888855442 2 2333378888877666555544
Q ss_pred eeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCC-CCeEEEEeCCCcEEEEeCC
Q 003840 506 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPS-MPRLATSSFDKTVRVWDAD 584 (792)
Q Consensus 506 ~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspd-g~~Lasgs~Dg~V~IWdl~ 584 (792)
.+.|++++|-.||++||+|...|.|+|||+.+...+..+.+|..+|..+.|+|. +..|++|+.|+.+++||+.
T Consensus 68 ------k~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s 141 (487)
T KOG0310|consen 68 ------KDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLS 141 (487)
T ss_pred ------ccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcC
Confidence 334899999999999999999999999998877778889999999999999995 5578889999999999999
Q ss_pred CCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCC-eeEEEee--CCeeEEEEecCCCEEEEEEcCCeE
Q 003840 585 NPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG-SCTRVFK--GGTAQMRFQPHLGRYLAAAAENVV 661 (792)
Q Consensus 585 s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~-~~~~~~~--~~~~~v~~sp~~~~lla~s~dg~I 661 (792)
+ ......+.+|++.|.|.+|+|-.++++++|+.||.|++||++.. ..+..++ .++..+.+.|.+..+++ +..+.|
T Consensus 142 ~-a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~ias-AgGn~v 219 (487)
T KOG0310|consen 142 T-AYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIAS-AGGNSV 219 (487)
T ss_pred C-cEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEE-cCCCeE
Confidence 8 55567889999999999999999999999999999999999987 5555554 46788899988666554 455789
Q ss_pred EEEECCCC-eEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEE
Q 003840 662 SILDAETQ-ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLL 739 (792)
Q Consensus 662 ~i~D~~t~-~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~ 739 (792)
+|||+.++ +.+..+..|...|+|+++..++..|++++-| .|++||+.+. +.++.+. -.++|.+|+++|++..++
T Consensus 220 kVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~---Kvv~s~~-~~~pvLsiavs~dd~t~v 295 (487)
T KOG0310|consen 220 KVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNY---KVVHSWK-YPGPVLSIAVSPDDQTVV 295 (487)
T ss_pred EEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccce---EEEEeee-cccceeeEEecCCCceEE
Confidence 99999965 5556666699999999999999999999999 9999997554 6666655 357899999999999999
Q ss_pred EEEcCCeEEEEECCC
Q 003840 740 VIGCYQSLELWNMSE 754 (792)
Q Consensus 740 sgs~dg~I~IwDl~~ 754 (792)
+|..+|.+.+-+...
T Consensus 296 iGmsnGlv~~rr~~~ 310 (487)
T KOG0310|consen 296 IGMSNGLVSIRRREV 310 (487)
T ss_pred Eecccceeeeehhhc
Confidence 999999887775433
No 76
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=3.8e-26 Score=229.46 Aligned_cols=287 Identities=17% Similarity=0.325 Sum_probs=242.8
Q ss_pred ceeeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEE
Q 003840 501 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV 580 (792)
Q Consensus 501 ~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~I 580 (792)
.+..++.+.||.+.|+.++.......+.+++.|.+.+||.+++++++.++.+|.+.|++|.|++.+.++++++.|++..|
T Consensus 137 ~~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHI 216 (481)
T KOG0300|consen 137 KFRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHI 216 (481)
T ss_pred eEeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHH
Confidence 45678889999999999999988889999999999999999999999999999999999999999999999999999999
Q ss_pred EeCC------CC---------------------------------CceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCc
Q 003840 581 WDAD------NP---------------------------------GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGE 621 (792)
Q Consensus 581 Wdl~------s~---------------------------------~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~ 621 (792)
|... .+ ..++..+.+|.+.|.+..|...+..++ +++.|.+
T Consensus 217 W~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~v-TaSWDRT 295 (481)
T KOG0300|consen 217 WKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMV-TASWDRT 295 (481)
T ss_pred HHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceee-eeecccc
Confidence 9621 00 023567789999999999998877555 9999999
Q ss_pred EEEEEcCCCeeEEEeeCCe---eEEEEecCCCEEEEEEcCCeEEEEECCCC-eEEEEecCCCCCeEEEEEcCCCCEEEEE
Q 003840 622 IRYWSINNGSCTRVFKGGT---AQMRFQPHLGRYLAAAAENVVSILDAETQ-ACRLSLQGHTKPIDSVCWDPSGELLASV 697 (792)
Q Consensus 622 I~iwdl~~~~~~~~~~~~~---~~v~~sp~~~~lla~s~dg~I~i~D~~t~-~~~~~l~~h~~~V~sv~~spdg~~Las~ 697 (792)
..+||+++++.+..+.++. ..++-+|....+++.+.|.+.++||++.. ..+..|.+|...|+++.|..+ ..++++
T Consensus 296 AnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~d-d~vVSg 374 (481)
T KOG0300|consen 296 ANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTD-DRVVSG 374 (481)
T ss_pred ceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecC-Cceeec
Confidence 9999999999999887754 45677888888888899999999999865 567789999999999999765 457889
Q ss_pred eCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEE-----EcccCCCeEEEE
Q 003840 698 SED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMT-----LTAHEGLIAALA 771 (792)
Q Consensus 698 s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~~-----~~~h~~~V~sl~ 771 (792)
++| +|+|||+++... .+..+. ...++..++++..++.|+.-..+..|++||+...++.. -.+|...|+|++
T Consensus 375 SDDrTvKvWdLrNMRs--plATIR-tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~A 451 (481)
T KOG0300|consen 375 SDDRTVKVWDLRNMRS--PLATIR-TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCA 451 (481)
T ss_pred CCCceEEEeeeccccC--cceeee-cCCccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeee
Confidence 999 999999987643 333333 35678889999888888888888899999999887653 348999999999
Q ss_pred EeCCC--CEEEEEeCCCcEEEeC
Q 003840 772 VSTET--GYVASASHDKFVKLWK 792 (792)
Q Consensus 772 fspdg--~~LaSgs~DG~I~IWd 792 (792)
|..+- .-|++||-|..+.-|+
T Consensus 452 W~eehp~cnLftcGFDR~v~gW~ 474 (481)
T KOG0300|consen 452 WLEEHPACNLFTCGFDRMVAGWK 474 (481)
T ss_pred ccccCcccccccccccceeeeeE
Confidence 97653 2478999999998885
No 77
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.94 E-value=1.3e-25 Score=245.12 Aligned_cols=346 Identities=13% Similarity=0.194 Sum_probs=268.6
Q ss_pred CCCeeEeCCCcchhhcccccccC-------------------CCCCCceeeeccCCCC----CCCCCCCcceeccCCcce
Q 003840 446 PSNQLWDDKDLELRADMDRLVED-------------------GSLDDNVESFLSHDDT----DPRDAGGRGMDVSQGFSF 502 (792)
Q Consensus 446 ~s~~lWD~~tg~~~~~~~~~~~~-------------------g~~d~~v~~~l~~d~~----~~~d~~~~~~d~~~~~~~ 502 (792)
+..+||+.++.++..++.+...- +.+.+.|.+.|..-.. ...|...-+||+.+....
T Consensus 280 g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~~kv 359 (1080)
T KOG1408|consen 280 GMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKV 359 (1080)
T ss_pred ceeeecCcchhhhccccccccccccchhhcccccccccccCcccCCceeEEEecCCCceEEEEEcCceEEEEeccccccc
Confidence 34488999888777776544332 2333444444432221 235667789999998888
Q ss_pred eeeeeeecCCCCeEEEEEcCC-----------CCEEEEEeCCCeEEEEECCCCceeEEe---------------------
Q 003840 503 KEANSVRASTSKVICCHFSSD-----------GKLLATGGHDKKAVLWHTDTLKSKTNL--------------------- 550 (792)
Q Consensus 503 ~~~~~l~~H~~~V~~lafspd-----------g~~Lasgs~Dg~I~vWdl~t~~~~~~l--------------------- 550 (792)
.....+-.|...|+.+.--|. ...+++++.|++|++||++.+..-..+
T Consensus 360 gk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~ 439 (1080)
T KOG1408|consen 360 GKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQI 439 (1080)
T ss_pred cceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhh
Confidence 888888999999999887662 136889999999999998752111110
Q ss_pred ----------------ccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCC--CCeE
Q 003840 551 ----------------EEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPN--KDDL 612 (792)
Q Consensus 551 ----------------~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd--~~~l 612 (792)
.+....|.+|+.+|++.+||+|..-|+++|||+.+ ......+..|...|.|+.|+.. +..|
T Consensus 440 ~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~-l~~~~~~eAHesEilcLeyS~p~~~~kL 518 (1080)
T KOG1408|consen 440 MHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQE-LEYTCFMEAHESEILCLEYSFPVLTNKL 518 (1080)
T ss_pred hhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehh-hhhhhheecccceeEEEeecCchhhhHh
Confidence 01345799999999999999999999999999987 5666778899999999999743 4568
Q ss_pred EEEEeCCCcEEEEEcCCC-eeEEEeeC---CeeEEEEecCC--CEEEEEEcCCeEEEEECCCCeEEEEecC-----CCCC
Q 003840 613 ICSCDGDGEIRYWSINNG-SCTRVFKG---GTAQMRFQPHL--GRYLAAAAENVVSILDAETQACRLSLQG-----HTKP 681 (792)
Q Consensus 613 l~sgs~Dg~I~iwdl~~~-~~~~~~~~---~~~~v~~sp~~--~~lla~s~dg~I~i~D~~t~~~~~~l~~-----h~~~ 681 (792)
|++++.|..|.|||+... ..+.++.+ .++.+.|...+ ...++++.|..|.+--.........+.. ....
T Consensus 519 LASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktT 598 (1080)
T KOG1408|consen 519 LASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTT 598 (1080)
T ss_pred hhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccce
Confidence 999999999999998754 33344443 56778888777 5678888888776544332211111211 2345
Q ss_pred eEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-E
Q 003840 682 IDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-T 759 (792)
Q Consensus 682 V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~ 759 (792)
+..++..|..+++++++.| .|+|||+.+++..+.++.-..+++....+...|.|.||++.+.|.++.|||+.+++++ .
T Consensus 599 lYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~ 678 (1080)
T KOG1408|consen 599 LYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQ 678 (1080)
T ss_pred EEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhh
Confidence 8899999999999999999 9999999998666666666667788999999999999999999999999999999999 7
Q ss_pred EcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003840 760 LTAHEGLIAALAVSTETGYVASASHDKFVKLWK 792 (792)
Q Consensus 760 ~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd 792 (792)
..+|...|+.+.|.+|.+.|++++.||.|.||+
T Consensus 679 m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~ 711 (1080)
T KOG1408|consen 679 MTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWK 711 (1080)
T ss_pred hcCcchheeeeeecccchhheeecCCceEEEEE
Confidence 899999999999999999999999999999995
No 78
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=8.5e-26 Score=254.02 Aligned_cols=275 Identities=18% Similarity=0.276 Sum_probs=210.0
Q ss_pred CcceEEEEeCCCeeeecCCC---eeEeCCCcchhhccccccc---------CC------CCCCceeeeccCCCCCCCCCC
Q 003840 429 SKPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVE---------DG------SLDDNVESFLSHDDTDPRDAG 490 (792)
Q Consensus 429 ~k~~l~~s~Dg~~~~ss~s~---~lWD~~tg~~~~~~~~~~~---------~g------~~d~~v~~~l~~d~~~~~d~~ 490 (792)
++-.|+||+||+|+++++.+ +||.+...+. ..++.... .+ .....+...............
T Consensus 269 aIw~mKFS~DGKyLAsaGeD~virVWkVie~e~-~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s~~ 347 (712)
T KOG0283|consen 269 AIWAMKFSHDGKYLASAGEDGVIRVWKVIESER-MRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQSPC 347 (712)
T ss_pred cEEEEEeCCCCceeeecCCCceEEEEEEeccch-hcccccccchhhhhhhhccccCccccccccccccccccccccCCcc
Confidence 45689999999999999888 8899887544 11111000 00 000011111111112222222
Q ss_pred CcceeccCCcceeeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECC-CCCeE
Q 003840 491 GRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSP-SMPRL 569 (792)
Q Consensus 491 ~~~~d~~~~~~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fsp-dg~~L 569 (792)
...-+....+.-+++..+.||.+.|.+|.||.++ +|++++.|++|+||++...+++..|. |.+.|+||+|+| |.+||
T Consensus 348 ~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDryF 425 (712)
T KOG0283|consen 348 VLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDRYF 425 (712)
T ss_pred ccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCCCcE
Confidence 3444444567778899999999999999999887 89999999999999999999999886 999999999999 78899
Q ss_pred EEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee----------C-
Q 003840 570 ATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK----------G- 638 (792)
Q Consensus 570 asgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~----------~- 638 (792)
++|+-||.||||++.. ..+..+.....-|++++|.|+|.. +++|+.+|.+++|++...+....+. +
T Consensus 426 iSGSLD~KvRiWsI~d--~~Vv~W~Dl~~lITAvcy~PdGk~-avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~ 502 (712)
T KOG0283|consen 426 ISGSLDGKVRLWSISD--KKVVDWNDLRDLITAVCYSPDGKG-AVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGK 502 (712)
T ss_pred eecccccceEEeecCc--CeeEeehhhhhhheeEEeccCCce-EEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCc
Confidence 9999999999999985 455556666789999999999875 5599999999999999877654321 1
Q ss_pred CeeEEEEecCC-CEEEEEEcCCeEEEEECCCCeEEEEecCCCC--CeEEEEEcCCCCEEEEEeCC-eEEEEECCC
Q 003840 639 GTAQMRFQPHL-GRYLAAAAENVVSILDAETQACRLSLQGHTK--PIDSVCWDPSGELLASVSED-SVRVWTVGS 709 (792)
Q Consensus 639 ~~~~v~~sp~~-~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~--~V~sv~~spdg~~Las~s~d-~I~IwDl~s 709 (792)
.++.+.|.|.. ..+++++.|..|+|||.++..++..|+++.. .-....|+.||++|+++++| .|+||++..
T Consensus 503 rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 503 RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDS 577 (712)
T ss_pred eeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCC
Confidence 36677777654 4699999999999999999999988887432 23567899999999999999 999999844
No 79
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.94 E-value=1.7e-25 Score=257.21 Aligned_cols=299 Identities=20% Similarity=0.337 Sum_probs=238.9
Q ss_pred ccCCCCCCCCCcceEEEEeCCCeeeecCCC-----eeEeCCCcchhhcccccccCCCCCCceeeeccCCCCCCCCCCCcc
Q 003840 419 MPALPHSGTTSKPLMMFGTDGAGTLTSPSN-----QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRG 493 (792)
Q Consensus 419 ~p~~p~~~~~~k~~l~~s~Dg~~~~ss~s~-----~lWD~~tg~~~~~~~~~~~~g~~d~~v~~~l~~d~~~~~d~~~~~ 493 (792)
.+.+.|.... .-.+.++|||..+++++.. .||+...-- .+...
T Consensus 6 p~wv~H~~~~-IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl--~~~~~----------------------------- 53 (942)
T KOG0973|consen 6 PTWVNHNEKS-IFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVL--DEKEE----------------------------- 53 (942)
T ss_pred ccccccCCee-EEEEEecCCceeEecCCccccccceeecccccc--chhhh-----------------------------
Confidence 3445555322 3367889999999887733 588754311 00000
Q ss_pred eeccCCcceeeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECC------------------CCceeEEeccCCC
Q 003840 494 MDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTD------------------TLKSKTNLEEHSS 555 (792)
Q Consensus 494 ~d~~~~~~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~------------------t~~~~~~l~~h~~ 555 (792)
++ ..--+.+.....|.+.|+|+.|++||++||+|++|+.|.||+.. ..+.+..+.+|..
T Consensus 54 ~~---~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~ 130 (942)
T KOG0973|consen 54 KN---ENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDS 130 (942)
T ss_pred hh---cccchhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCC
Confidence 00 00124567788999999999999999999999999999999876 2346778899999
Q ss_pred CEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEE
Q 003840 556 LITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV 635 (792)
Q Consensus 556 ~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~ 635 (792)
.|.+++|+|++.+||+++.|++|.|||..+. +.++.+.+|.+.|..+.|.|-|. +||+-+.|++|+||++.+..+.+.
T Consensus 131 DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF-~~~~vl~~H~s~VKGvs~DP~Gk-y~ASqsdDrtikvwrt~dw~i~k~ 208 (942)
T KOG0973|consen 131 DVLDVNWSPDDSLLVSVSLDNSVIIWNAKTF-ELLKVLRGHQSLVKGVSWDPIGK-YFASQSDDRTLKVWRTSDWGIEKS 208 (942)
T ss_pred ccceeccCCCccEEEEecccceEEEEccccc-eeeeeeecccccccceEECCccC-eeeeecCCceEEEEEcccceeeEe
Confidence 9999999999999999999999999999985 88999999999999999999986 667999999999999887666666
Q ss_pred eeC---------CeeEEEEecCCCEEEEEEc----CCeEEEEECCCCeEEEEecCCCCCeEEEEEcCC------------
Q 003840 636 FKG---------GTAQMRFQPHLGRYLAAAA----ENVVSILDAETQACRLSLQGHTKPIDSVCWDPS------------ 690 (792)
Q Consensus 636 ~~~---------~~~~v~~sp~~~~lla~s~----dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spd------------ 690 (792)
+.. ....+.|+|+|.+|++... ...+.|.+-.+.+.-..|-+|.+++.++.|+|.
T Consensus 209 It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~ 288 (942)
T KOG0973|consen 209 ITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTST 288 (942)
T ss_pred eccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCcc
Confidence 543 3455789999999988765 348999999999999999999999999999981
Q ss_pred -CC----EEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCc
Q 003840 691 -GE----LLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK 756 (792)
Q Consensus 691 -g~----~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~ 756 (792)
.+ .+|+|+.| +|.||.....+....++. .....|..++|+|||-.|++++.||+|.++.+++.+
T Consensus 289 ~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~--lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 289 QPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHN--LFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKE 358 (942)
T ss_pred CCCcceEEEEEecCCccEEEEecCCCCchhhhhh--hhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHH
Confidence 11 67888999 999999866543333333 345679999999999999999999999999997653
No 80
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=7.7e-26 Score=221.99 Aligned_cols=250 Identities=20% Similarity=0.329 Sum_probs=206.5
Q ss_pred CcceeeeeeeecCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEECC-CCceeEEeccCCCCEEEEEECC-CCCeEEEEeCC
Q 003840 499 GFSFKEANSVRASTSKVICCHFSSD-GKLLATGGHDKKAVLWHTD-TLKSKTNLEEHSSLITDVRFSP-SMPRLATSSFD 575 (792)
Q Consensus 499 ~~~~~~~~~l~~H~~~V~~lafspd-g~~Lasgs~Dg~I~vWdl~-t~~~~~~l~~h~~~V~~i~fsp-dg~~Lasgs~D 575 (792)
...+.+...+.. .+.+..++|+++ .+.+++++.||+++|||+. ...++..+++|...|.++.|++ ++..+++++.|
T Consensus 48 ~~gi~e~~s~d~-~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD 126 (311)
T KOG0277|consen 48 PKGIQECQSYDT-EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWD 126 (311)
T ss_pred CCCeEEEEeeec-ccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccC
Confidence 334444444433 456999999995 4588889999999999964 3467888999999999999998 45578889999
Q ss_pred CcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee---CCeeEEEEecCCCEE
Q 003840 576 KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLGRY 652 (792)
Q Consensus 576 g~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~---~~~~~v~~sp~~~~l 652 (792)
++|++|+... ...+.++.+|...|....|+|...++|++++.|+++++||++.......+. ..+.++.|+....++
T Consensus 127 ~TiKLW~~~r-~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~v 205 (311)
T KOG0277|consen 127 GTIKLWDPNR-PNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNV 205 (311)
T ss_pred CceEeecCCC-CcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcE
Confidence 9999999987 778899999999999999999999999999999999999998643333343 356778888766654
Q ss_pred -EEEEcCCeEEEEECCCC-eEEEEecCCCCCeEEEEEcCCC-CEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEE
Q 003840 653 -LAAAAENVVSILDAETQ-ACRLSLQGHTKPIDSVCWDPSG-ELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHS 728 (792)
Q Consensus 653 -la~s~dg~I~i~D~~t~-~~~~~l~~h~~~V~sv~~spdg-~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~s 728 (792)
++++.|+.|++||+++. .++..+.+|.-.|+.|+|+|.. .+|++++.| +++|||..... .++.+...|..-+..
T Consensus 206 l~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~d--s~~e~~~~HtEFv~g 283 (311)
T KOG0277|consen 206 LATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQD--SAIETVDHHTEFVCG 283 (311)
T ss_pred EEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccch--hhhhhhhccceEEec
Confidence 55667999999999986 5788899999999999999954 589999999 99999997543 456666778888888
Q ss_pred EEEeC-CCCEEEEEEcCCeEEEEEC
Q 003840 729 CVFHP-TYPSLLVIGCYQSLELWNM 752 (792)
Q Consensus 729 i~fsp-dg~~L~sgs~dg~I~IwDl 752 (792)
+.|++ +..+++.++.|+.++||+.
T Consensus 284 ~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 284 LDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred cccccccCceeeecccccceeeecc
Confidence 99987 5678999999999999984
No 81
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.94 E-value=1.3e-24 Score=242.28 Aligned_cols=335 Identities=19% Similarity=0.301 Sum_probs=260.7
Q ss_pred CeeEeCCCcchhhcccccccCCCCCCceeeeccCC-----CCCCCCCCCcceeccCCcceeeeeeeecCCCCeEEEEEcC
Q 003840 448 NQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHD-----DTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSS 522 (792)
Q Consensus 448 ~~lWD~~tg~~~~~~~~~~~~g~~d~~v~~~l~~d-----~~~~~d~~~~~~d~~~~~~~~~~~~l~~H~~~V~~lafsp 522 (792)
-.|||+++++.+..+.++.. .|.+.-... ..+..++.+.+.++..+ +.+.+|+-.-+.|+.++|.-
T Consensus 184 lql~Nvrt~K~v~~f~~~~s------~IT~ieqsPaLDVVaiG~~~G~ViifNlK~d---kil~sFk~d~g~VtslSFrt 254 (910)
T KOG1539|consen 184 LQLWNVRTGKVVYTFQEFFS------RITAIEQSPALDVVAIGLENGTVIIFNLKFD---KILMSFKQDWGRVTSLSFRT 254 (910)
T ss_pred EEEEEeccCcEEEEeccccc------ceeEeccCCcceEEEEeccCceEEEEEcccC---cEEEEEEccccceeEEEecc
Confidence 37899999998887776542 222221111 12234444444544443 35566665579999999999
Q ss_pred CCC-EEEEEeCCCeEEEEECCCCceeEEec-cCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCC---ceeEEecccC
Q 003840 523 DGK-LLATGGHDKKAVLWHTDTLKSKTNLE-EHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG---YSLRTFMGHS 597 (792)
Q Consensus 523 dg~-~Lasgs~Dg~I~vWdl~t~~~~~~l~-~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~---~~i~~~~~h~ 597 (792)
||+ .+|+|+..|.+.+||++..+.+..+. .|.+.|..+.|.+....|++++.|..+++|-.+++. ..++...+|.
T Consensus 255 DG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs 334 (910)
T KOG1539|consen 255 DGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHS 334 (910)
T ss_pred CCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCC
Confidence 998 56677777999999999988887776 798999999999999999999999999998776432 4556667888
Q ss_pred CCeEEEEEcCCCCeEEEEEeCCCcEEEEEc--------------------------------------------------
Q 003840 598 ASVMSLDFHPNKDDLICSCDGDGEIRYWSI-------------------------------------------------- 627 (792)
Q Consensus 598 ~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl-------------------------------------------------- 627 (792)
.+..||.|.....+.+.+++.|++++.+++
T Consensus 335 ~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv 414 (910)
T KOG1539|consen 335 APPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNV 414 (910)
T ss_pred CCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcce
Confidence 888888888555555667777776655553
Q ss_pred ---------------CCCee-EEEe--------eCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEe---cCCCC
Q 003840 628 ---------------NNGSC-TRVF--------KGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSL---QGHTK 680 (792)
Q Consensus 628 ---------------~~~~~-~~~~--------~~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l---~~h~~ 680 (792)
++... ...+ ...+.+++.++.|+..+.|.+.|.|.+|++.++.....+ ..|.+
T Consensus 415 ~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~ 494 (910)
T KOG1539|consen 415 ITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKG 494 (910)
T ss_pred eEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccC
Confidence 22111 0111 123566888889999999999999999999999988888 47999
Q ss_pred CeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCC--------------------------------------cceEEEeec
Q 003840 681 PIDSVCWDPSGELLASVSED-SVRVWTVGSGSE--------------------------------------GECVHELSC 721 (792)
Q Consensus 681 ~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~--------------------------------------~~~i~~~~~ 721 (792)
+|+.++.+.-++.+++++.+ .+++||+..... .+.++.+.+
T Consensus 495 ~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~g 574 (910)
T KOG1539|consen 495 EVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWG 574 (910)
T ss_pred ceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhc
Confidence 99999999999989988888 999999876420 112234667
Q ss_pred CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEeCC-CcEEEe
Q 003840 722 NGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHD-KFVKLW 791 (792)
Q Consensus 722 ~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~~~~~h~~~V~sl~fspdg~~LaSgs~D-G~I~IW 791 (792)
|.+.|+.++|||||++|++++.|++|++||+.++.++....-+.+++++.|+|+|.+|||+..| .-|++|
T Consensus 575 h~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LAT~Hvd~~gIylW 645 (910)
T KOG1539|consen 575 HGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLATVHVDQNGIYLW 645 (910)
T ss_pred cccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecCCcceeeEECCCCCEEEEEEecCceEEEE
Confidence 8999999999999999999999999999999999999888888999999999999999999998 679999
No 82
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=2.6e-25 Score=244.65 Aligned_cols=292 Identities=19% Similarity=0.291 Sum_probs=241.1
Q ss_pred CcCCCCCceeccCCCCCCCCCcceEEEEeCCCeeeecC-CCeeEeCCCcchhhcccccccCCCCCCceeeeccCCCCCCC
Q 003840 409 STHTPGDVISMPALPHSGTTSKPLMMFGTDGAGTLTSP-SNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPR 487 (792)
Q Consensus 409 st~tp~~~~~~p~~p~~~~~~k~~l~~s~Dg~~~~ss~-s~~lWD~~tg~~~~~~~~~~~~g~~d~~v~~~l~~d~~~~~ 487 (792)
-..+|.+++.+|.+..+-. ..++.||..+...++.+ ...||+..+++...
T Consensus 161 ~~~~p~rvLDaP~l~dDfY--~nlldWss~n~laValg~~vylW~~~s~~v~~--------------------------- 211 (484)
T KOG0305|consen 161 IPQTPYRVLDAPGLQDDFY--LNLLDWSSANVLAVALGQSVYLWSASSGSVTE--------------------------- 211 (484)
T ss_pred ccCChhhhccCCcccccHh--hhHhhcccCCeEEEEecceEEEEecCCCceEE---------------------------
Confidence 4567888888887764432 34788887777766655 34788887765211
Q ss_pred CCCCcceeccCCcceeeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEecc-CCCCEEEEEECCCC
Q 003840 488 DAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE-HSSLITDVRFSPSM 566 (792)
Q Consensus 488 d~~~~~~d~~~~~~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~-h~~~V~~i~fspdg 566 (792)
+.. .+.+.|+++.|+++|.+||+|..+|.|.|||..+.+.+.++.+ |...|-+++|. +
T Consensus 212 -----------------l~~--~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~ 270 (484)
T KOG0305|consen 212 -----------------LCS--FGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--S 270 (484)
T ss_pred -----------------eEe--cCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--C
Confidence 111 1266799999999999999999999999999999999999998 99999999998 6
Q ss_pred CeEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEe---eCCeeEE
Q 003840 567 PRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF---KGGTAQM 643 (792)
Q Consensus 567 ~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~---~~~~~~v 643 (792)
..+.+|+.|+.|.++|++.....+.++.+|...|..+.|++|+. ++++|+.|+.|.|||.........+ ...+..+
T Consensus 271 ~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~-~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~ 349 (484)
T KOG0305|consen 271 SVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGN-QLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKAL 349 (484)
T ss_pred ceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCC-eeccCCCccceEeccCCCccccEEEeccceeeeEe
Confidence 68999999999999999986655566889999999999999975 6779999999999999666655544 4567889
Q ss_pred EEecCCCEEEEEEc---CCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeC--C-eEEEEECCCCCCcceEE
Q 003840 644 RFQPHLGRYLAAAA---ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSE--D-SVRVWTVGSGSEGECVH 717 (792)
Q Consensus 644 ~~sp~~~~lla~s~---dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~--d-~I~IwDl~s~~~~~~i~ 717 (792)
+|+|....+++.+. |+.|++||..+++.+..+. ....|.+|.|++..+-|+++.. + .|.||++.+. +.+.
T Consensus 350 awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~---~~~~ 425 (484)
T KOG0305|consen 350 AWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSM---KLVA 425 (484)
T ss_pred eeCCCccCceEEcCCCcccEEEEEEcCCCcEecccc-cCCceeeEEEcCCCCEEEEecCCCCCcEEEEecccc---ceee
Confidence 99998877666443 8999999999999888776 4577999999998875655432 2 8999999774 7888
Q ss_pred EeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCC
Q 003840 718 ELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSEN 755 (792)
Q Consensus 718 ~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~ 755 (792)
.+.+|...|..++++|||..|++|+.|.++++|++-+.
T Consensus 426 ~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 426 ELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred eecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 99999999999999999999999999999999998764
No 83
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.94 E-value=2.7e-25 Score=228.99 Aligned_cols=261 Identities=21% Similarity=0.349 Sum_probs=220.8
Q ss_pred CCCCCCCCcceeccCCcceeeeeeeecCCCCeEEEEEcCCC---CEEEEEeCCCeEEEEECCCCcee----EEeccCCCC
Q 003840 484 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDG---KLLATGGHDKKAVLWHTDTLKSK----TNLEEHSSL 556 (792)
Q Consensus 484 ~~~~d~~~~~~d~~~~~~~~~~~~l~~H~~~V~~lafspdg---~~Lasgs~Dg~I~vWdl~t~~~~----~~l~~h~~~ 556 (792)
++..|+..++|+... +..+.+.||.++|.+++|.... ..|++++.|.++++|.++.++.+ ....+|...
T Consensus 120 tgsYDg~~riWd~~G----k~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~ 195 (423)
T KOG0313|consen 120 TGSYDGTSRIWDLKG----KSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRS 195 (423)
T ss_pred EeecCCeeEEEecCC----ceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccc
Confidence 345677788887654 5788899999999988886533 36999999999999998876543 334599999
Q ss_pred EEEEEECCCCCeEEEEeCCCcEEEEeCCCC------------------------CceeEEecccCCCeEEEEEcCCCCeE
Q 003840 557 ITDVRFSPSMPRLATSSFDKTVRVWDADNP------------------------GYSLRTFMGHSASVMSLDFHPNKDDL 612 (792)
Q Consensus 557 V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~------------------------~~~i~~~~~h~~~V~sl~fspd~~~l 612 (792)
|-+|+..+++..+++|+.|.+|.||+..+. +.++.++.+|..+|.++.|++ ...
T Consensus 196 V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d--~~v 273 (423)
T KOG0313|consen 196 VDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD--ATV 273 (423)
T ss_pred eeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC--CCc
Confidence 999999999999999999999999994311 234677889999999999998 346
Q ss_pred EEEEeCCCcEEEEEcCCCeeEEEeeC--CeeEEEEecCCCEEEEEEcCCeEEEEECCCC---eEEEEecCCCCCeEEEEE
Q 003840 613 ICSCDGDGEIRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYLAAAAENVVSILDAETQ---ACRLSLQGHTKPIDSVCW 687 (792)
Q Consensus 613 l~sgs~Dg~I~iwdl~~~~~~~~~~~--~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~---~~~~~l~~h~~~V~sv~~ 687 (792)
+++++.|.+|+.||+.++.++..+.+ ...++.+++....+++|+.|..|++||.+++ .+...|.+|...|.++.|
T Consensus 274 ~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkw 353 (423)
T KOG0313|consen 274 IYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKW 353 (423)
T ss_pred eEeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheec
Confidence 78999999999999999998877654 5688999999999999999999999999986 456789999999999999
Q ss_pred cCCCC-EEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 003840 688 DPSGE-LLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMS 753 (792)
Q Consensus 688 spdg~-~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~ 753 (792)
+|... .|++++.| ++++||+++.. ..+..+..|..+|.++.|.. +.+|++|+.|.+|+|+...
T Consensus 354 sp~~~~~~~S~S~D~t~klWDvRS~k--~plydI~~h~DKvl~vdW~~-~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 354 SPTNEFQLVSGSYDNTVKLWDVRSTK--APLYDIAGHNDKVLSVDWNE-GGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred CCCCceEEEEEecCCeEEEEEeccCC--CcceeeccCCceEEEEeccC-CceEEeccCcceEEEeccc
Confidence 99665 67788888 99999998752 48889999999999999974 5579999999999998753
No 84
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=4.3e-25 Score=222.79 Aligned_cols=265 Identities=18% Similarity=0.306 Sum_probs=221.6
Q ss_pred CcceeeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCC--eEEEEeCCC
Q 003840 499 GFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP--RLATSSFDK 576 (792)
Q Consensus 499 ~~~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~--~Lasgs~Dg 576 (792)
.+.+..+..+..|.+.|+|+|.+ +.|+|+|+.|-+|+|||+.+......+-.|.+.|+++.|.++-. .|++|+.||
T Consensus 30 ~~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG 107 (362)
T KOG0294|consen 30 KPTLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDG 107 (362)
T ss_pred ceeeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCC
Confidence 45667788899999999999985 77999999999999999999999999999999999999999765 899999999
Q ss_pred cEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEe--eCCeeEEEEecCCCEEEE
Q 003840 577 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF--KGGTAQMRFQPHLGRYLA 654 (792)
Q Consensus 577 ~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~--~~~~~~v~~sp~~~~lla 654 (792)
.|.+|+... ..++.++++|.+.|+.|+++|.++ |.++.+.|+.++.||+-+|+.-... +.....+.|+|.|.++++
T Consensus 108 ~i~iw~~~~-W~~~~slK~H~~~Vt~lsiHPS~K-LALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v 185 (362)
T KOG0294|consen 108 HIIIWRVGS-WELLKSLKAHKGQVTDLSIHPSGK-LALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVV 185 (362)
T ss_pred cEEEEEcCC-eEEeeeecccccccceeEecCCCc-eEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEE
Confidence 999999987 688999999999999999999976 6668888999999999998865544 455666999999888877
Q ss_pred EEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEE--
Q 003840 655 AAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVF-- 731 (792)
Q Consensus 655 ~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~f-- 731 (792)
+.. ..|-||.+++..+...+. ....+.|+.|. ++.+|++|.++ .|.+||..+. .+...+..|...|..+.+
T Consensus 186 ~~~-~~i~i~q~d~A~v~~~i~-~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~---~~~~~~~AH~~RVK~i~~~~ 259 (362)
T KOG0294|consen 186 SGR-NKIDIYQLDNASVFREIE-NPKRILCATFL-DGSELLVGGDNEWISLKDTDSD---TPLTEFLAHENRVKDIASYT 259 (362)
T ss_pred Eec-cEEEEEecccHhHhhhhh-ccccceeeeec-CCceEEEecCCceEEEeccCCC---ccceeeecchhheeeeEEEe
Confidence 665 567888888776655554 23557788775 45667777777 9999999764 788899999999999984
Q ss_pred eCCCCEEEEEEcCCeEEEEECCCC-----cEEEEcccCCCeEEEEEe
Q 003840 732 HPTYPSLLVIGCYQSLELWNMSEN-----KTMTLTAHEGLIAALAVS 773 (792)
Q Consensus 732 spdg~~L~sgs~dg~I~IwDl~~~-----~~~~~~~h~~~V~sl~fs 773 (792)
.|++.+|+++++||.|+|||++.. +.+........++|+...
T Consensus 260 ~~~~~~lvTaSSDG~I~vWd~~~~~k~~~~~l~e~n~~~RltCl~~~ 306 (362)
T KOG0294|consen 260 NPEHEYLVTASSDGFIKVWDIDMETKKRPTLLAELNTNVRLTCLRVK 306 (362)
T ss_pred cCCceEEEEeccCceEEEEEccccccCCcceeEEeecCCccceeeeh
Confidence 457889999999999999999876 344444556677777654
No 85
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=2.7e-26 Score=249.67 Aligned_cols=268 Identities=22% Similarity=0.385 Sum_probs=230.0
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCc------eeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCC-ceeEEec
Q 003840 522 SDGKLLATGGHDKKAVLWHTDTLK------SKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG-YSLRTFM 594 (792)
Q Consensus 522 pdg~~Lasgs~Dg~I~vWdl~t~~------~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~-~~i~~~~ 594 (792)
|.++||++||.||.|++|++.... ....++.|.+.|++++...+++.|++++.|-+|++|+..... .++.++.
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir 114 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIR 114 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhh
Confidence 467789999999999999986322 466788999999999999999999999999999999998754 7788899
Q ss_pred ccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCee--EEEe------------eCCeeEEEEecCCCEEEEEEcCCe
Q 003840 595 GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC--TRVF------------KGGTAQMRFQPHLGRYLAAAAENV 660 (792)
Q Consensus 595 ~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~--~~~~------------~~~~~~v~~sp~~~~lla~s~dg~ 660 (792)
.|.+.|.||++....+.++++|+-|+.|++||++++.. +..+ +..+.+++.++.+..++.|+.++.
T Consensus 115 ~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~ 194 (735)
T KOG0308|consen 115 THKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKD 194 (735)
T ss_pred cccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccc
Confidence 99999999999555578999999999999999998732 2222 234667888888878888999999
Q ss_pred EEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEE
Q 003840 661 VSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLL 739 (792)
Q Consensus 661 I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~ 739 (792)
|++||.++.+.+..+.+|...|.++..++||+.+++++.| +|++||+.-. +|+.++..|...++++..+|+-.+++
T Consensus 195 lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQ---rCl~T~~vH~e~VWaL~~~~sf~~vY 271 (735)
T KOG0308|consen 195 LRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQ---RCLATYIVHKEGVWALQSSPSFTHVY 271 (735)
T ss_pred eEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeecccc---ceeeeEEeccCceEEEeeCCCcceEE
Confidence 9999999999999999999999999999999999999999 9999999654 89999999999999999999999999
Q ss_pred EEEcCCeEEEEECCCC-cEEEEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003840 740 VIGCYQSLELWNMSEN-KTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 792 (792)
Q Consensus 740 sgs~dg~I~IwDl~~~-~~~~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd 792 (792)
+|+.||.|+.=|+++. ++..+...+.+|..+..+.+..-+-++..|+.|+-|.
T Consensus 272 sG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~ 325 (735)
T KOG0308|consen 272 SGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWK 325 (735)
T ss_pred ecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecC
Confidence 9999999999999984 3445556667777777765444445677888898884
No 86
>PTZ00421 coronin; Provisional
Probab=99.94 E-value=3.3e-24 Score=243.81 Aligned_cols=224 Identities=17% Similarity=0.272 Sum_probs=181.3
Q ss_pred eeecCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCC-------ceeEEeccCCCCEEEEEECCCC-CeEEEEeCCCc
Q 003840 507 SVRASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTDTL-------KSKTNLEEHSSLITDVRFSPSM-PRLATSSFDKT 577 (792)
Q Consensus 507 ~l~~H~~~V~~lafsp-dg~~Lasgs~Dg~I~vWdl~t~-------~~~~~l~~h~~~V~~i~fspdg-~~Lasgs~Dg~ 577 (792)
.+.+|.+.|++++|+| ++++||+|+.|++|+|||+.++ +.+..+.+|...|.+|+|+|++ .+|++++.|++
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dgt 149 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMV 149 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCE
Confidence 4789999999999999 8899999999999999999764 3567788999999999999975 69999999999
Q ss_pred EEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCCe----eEEEEecCCCEEE
Q 003840 578 VRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGT----AQMRFQPHLGRYL 653 (792)
Q Consensus 578 V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~----~~v~~sp~~~~ll 653 (792)
|+|||+++ +..+..+.+|...|.+++|+|++. +|++++.|+.|++||+++++.+..+..+. ..+.|.++++.++
T Consensus 150 VrIWDl~t-g~~~~~l~~h~~~V~sla~spdG~-lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~iv 227 (493)
T PTZ00421 150 VNVWDVER-GKAVEVIKCHSDQITSLEWNLDGS-LLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLII 227 (493)
T ss_pred EEEEECCC-CeEEEEEcCCCCceEEEEEECCCC-EEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEE
Confidence 99999997 667788889999999999999975 66799999999999999999887776442 3577888888888
Q ss_pred EEEc----CCeEEEEECCCCe-EEEEecC-CCCCeEEEEEcCCCCEEEEEeC-C-eEEEEECCCCCCcceEEEeec-CCC
Q 003840 654 AAAA----ENVVSILDAETQA-CRLSLQG-HTKPIDSVCWDPSGELLASVSE-D-SVRVWTVGSGSEGECVHELSC-NGN 724 (792)
Q Consensus 654 a~s~----dg~I~i~D~~t~~-~~~~l~~-h~~~V~sv~~spdg~~Las~s~-d-~I~IwDl~s~~~~~~i~~~~~-~~~ 724 (792)
+++. |+.|++||+++.. ++..+.. +...+....|++++.+|++++. | .|++||+.++. .+..... +..
T Consensus 228 t~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~---~~~~~~~~s~~ 304 (493)
T PTZ00421 228 TLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNER---LTFCSSYSSVE 304 (493)
T ss_pred EEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCc---eEEEeeccCCC
Confidence 7653 7899999998764 3333332 3345666789999999988874 5 99999998763 3333222 344
Q ss_pred ceEEEEEeCCC
Q 003840 725 KFHSCVFHPTY 735 (792)
Q Consensus 725 ~i~si~fspdg 735 (792)
.+..++|.|..
T Consensus 305 ~~~g~~~~pk~ 315 (493)
T PTZ00421 305 PHKGLCMMPKW 315 (493)
T ss_pred CCcceEecccc
Confidence 57778888753
No 87
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.94 E-value=1.3e-25 Score=221.29 Aligned_cols=239 Identities=23% Similarity=0.398 Sum_probs=208.2
Q ss_pred EEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCce-eEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEE
Q 003840 548 TNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYS-LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWS 626 (792)
Q Consensus 548 ~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~-i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwd 626 (792)
+.+.+|...|.+|+|+.+|..|++|+.|+++.||+++..... -....+|.+.|..++|+|....+|++++.|.+|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 456689999999999999999999999999999999864221 1345689999999999999999999999999999999
Q ss_pred cCCCeeEEEee--CCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEE-eCCeEE
Q 003840 627 INNGSCTRVFK--GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASV-SEDSVR 703 (792)
Q Consensus 627 l~~~~~~~~~~--~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~-s~d~I~ 703 (792)
++.++++.... ++...+.|+|++++++++..|..|.++|.++.+.+...+ ....+..++|+.++.+++.. +.++|.
T Consensus 94 ~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~w~~~nd~Fflt~GlG~v~ 172 (313)
T KOG1407|consen 94 IRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEISWNNSNDLFFLTNGLGCVE 172 (313)
T ss_pred eccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhc-ccceeeeeeecCCCCEEEEecCCceEE
Confidence 99999987764 566778999999999999999999999999988877655 44567888998777755544 446888
Q ss_pred EEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEE
Q 003840 704 VWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASA 782 (792)
Q Consensus 704 IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~~~~h~~~V~sl~fspdg~~LaSg 782 (792)
|..... .+.+..+..|.....++.|+|+|+||++|+.|-.+.+||+.+.-++ .+..++-+|..+.|+.||++||+|
T Consensus 173 ILsyps---Lkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASa 249 (313)
T KOG1407|consen 173 ILSYPS---LKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASA 249 (313)
T ss_pred EEeccc---cccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeecc
Confidence 888854 4888999999999999999999999999999999999999998877 677899999999999999999999
Q ss_pred eCCCcEEE
Q 003840 783 SHDKFVKL 790 (792)
Q Consensus 783 s~DG~I~I 790 (792)
++|..|-|
T Consensus 250 SEDh~IDI 257 (313)
T KOG1407|consen 250 SEDHFIDI 257 (313)
T ss_pred CccceEEe
Confidence 99998865
No 88
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=8.3e-25 Score=220.46 Aligned_cols=283 Identities=20% Similarity=0.278 Sum_probs=213.3
Q ss_pred eeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeE--Ee--ccCCCCEEEEEECCCCCeEEEE-eCCCcEE
Q 003840 505 ANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKT--NL--EEHSSLITDVRFSPSMPRLATS-SFDKTVR 579 (792)
Q Consensus 505 ~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~--~l--~~h~~~V~~i~fspdg~~Lasg-s~Dg~V~ 579 (792)
+..|++|.+.|+|++|+.||++||+++.|++|+||++++..... .+ .-.-+.-+.++|.||-+-+++. -...+++
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~ 158 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLC 158 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEE
Confidence 45689999999999999999999999999999999998753221 11 1123356889999998865555 4455799
Q ss_pred EEeCCCCC---cee--------EEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeC---CeeEEEE
Q 003840 580 VWDADNPG---YSL--------RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRF 645 (792)
Q Consensus 580 IWdl~s~~---~~i--------~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~ 645 (792)
+|.+.... ... ..-..|.-.|..+-.... ..+|++++.|..|++|+++ |..+..+.. .....+.
T Consensus 159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~-~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aav 236 (420)
T KOG2096|consen 159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGN-AKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAV 236 (420)
T ss_pred EEEeeecccCCCCcccccccccccchhcccceEEEeecCC-ceEEEEecCCCcEEEEecC-Cceeeeeccccccccceee
Confidence 99876421 111 111234555656555444 5678899999999999999 777776654 3455889
Q ss_pred ecCCCEEEEEEcCCeEEEEECC---CC-----eEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCC----CC
Q 003840 646 QPHLGRYLAAAAENVVSILDAE---TQ-----ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSG----SE 712 (792)
Q Consensus 646 sp~~~~lla~s~dg~I~i~D~~---t~-----~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~----~~ 712 (792)
+|+|..+++++..-.|++|.+- .+ ..++.+++|...|..++|+++.+.+++.+.| +++|||+.-. ..
T Consensus 237 SP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qD 316 (420)
T KOG2096|consen 237 SPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQD 316 (420)
T ss_pred CCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCC
Confidence 9999999999999999999863 22 3567889999999999999999999999999 9999998532 22
Q ss_pred cceEEEe----ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE--EEcccCCCeEEEEEeCCCCEEEEEeCCC
Q 003840 713 GECVHEL----SCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM--TLTAHEGLIAALAVSTETGYVASASHDK 786 (792)
Q Consensus 713 ~~~i~~~----~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~--~~~~h~~~V~sl~fspdg~~LaSgs~DG 786 (792)
.+.+++. ...+.....+.++|.|..|++.. ...|.+|..++++.. ....|...|.+++|+++|+++++|| |.
T Consensus 317 pk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr 394 (420)
T KOG2096|consen 317 PKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG-DR 394 (420)
T ss_pred chHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec-ce
Confidence 2333322 22334455899999999776654 458999999998877 3457999999999999999999997 66
Q ss_pred cEEEe
Q 003840 787 FVKLW 791 (792)
Q Consensus 787 ~I~IW 791 (792)
.++++
T Consensus 395 ~vrv~ 399 (420)
T KOG2096|consen 395 YVRVI 399 (420)
T ss_pred eeeee
Confidence 67664
No 89
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1.1e-23 Score=203.13 Aligned_cols=287 Identities=21% Similarity=0.301 Sum_probs=232.4
Q ss_pred ceeeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC------C----c-----eeEEeccCCCCEEEEEECCC
Q 003840 501 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT------L----K-----SKTNLEEHSSLITDVRFSPS 565 (792)
Q Consensus 501 ~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t------~----~-----~~~~l~~h~~~V~~i~fspd 565 (792)
.|..+..+ ..+..|.+++|+|.|.+.|+|+..++++|.-... + + ..+.-+.|.+.|.|.+|+|+
T Consensus 22 ~f~~i~~l-~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~ 100 (350)
T KOG0641|consen 22 HFEAINIL-EDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPC 100 (350)
T ss_pred ceEEEEEe-cchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCc
Confidence 34444444 4456799999999999999999999988874321 1 0 11223468999999999999
Q ss_pred CCeEEEEeCCCcEEEEeCCCCCc----eeEEecccCCCeEEEEEcCC---CCeEEEEEe-CCCcEEEEEcCCCeeEEEee
Q 003840 566 MPRLATSSFDKTVRVWDADNPGY----SLRTFMGHSASVMSLDFHPN---KDDLICSCD-GDGEIRYWSINNGSCTRVFK 637 (792)
Q Consensus 566 g~~Lasgs~Dg~V~IWdl~s~~~----~i~~~~~h~~~V~sl~fspd---~~~ll~sgs-~Dg~I~iwdl~~~~~~~~~~ 637 (792)
|.+|++|+.|++|++.-++.+.. .-..|.-|.+.|..++|..+ +..++++++ .|..|++-|...+.....+.
T Consensus 101 geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~s 180 (350)
T KOG0641|consen 101 GELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALS 180 (350)
T ss_pred cCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeec
Confidence 99999999999999987764221 23456779999999999643 445665554 47888888999998888877
Q ss_pred CCeeEE--EEecCCCEEEEEEcCCeEEEEECCCCeEEEEecC--C-----CCCeEEEEEcCCCCEEEEEeCC-eEEEEEC
Q 003840 638 GGTAQM--RFQPHLGRYLAAAAENVVSILDAETQACRLSLQG--H-----TKPIDSVCWDPSGELLASVSED-SVRVWTV 707 (792)
Q Consensus 638 ~~~~~v--~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~--h-----~~~V~sv~~spdg~~Las~s~d-~I~IwDl 707 (792)
++...+ -++-++-.++.++.|.+|++||++-..++.++.. | ...|.+++.+|.|++|++|-.| ...+||+
T Consensus 181 ghtghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydi 260 (350)
T KOG0641|consen 181 GHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDI 260 (350)
T ss_pred CCcccEEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEe
Confidence 655432 2455667788888899999999999888887653 2 3569999999999999999999 9999999
Q ss_pred CCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCc-----EEEEcccCCCeEEEEEeCCCCEEEEE
Q 003840 708 GSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK-----TMTLTAHEGLIAALAVSTETGYVASA 782 (792)
Q Consensus 708 ~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~-----~~~~~~h~~~V~sl~fspdg~~LaSg 782 (792)
+.+ +.+..+..|...|.++.|+|...|+++++.|..|++-|+...- .+.+..|...+..+.|+|..--+++.
T Consensus 261 rg~---r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfiss 337 (350)
T KOG0641|consen 261 RGG---RMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISS 337 (350)
T ss_pred eCC---ceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeec
Confidence 877 7889999999999999999999999999999999999987532 34667899999999999988888999
Q ss_pred eCCCcEEEe
Q 003840 783 SHDKFVKLW 791 (792)
Q Consensus 783 s~DG~I~IW 791 (792)
+.|.++.+|
T Consensus 338 sadkt~tlw 346 (350)
T KOG0641|consen 338 SADKTATLW 346 (350)
T ss_pred cCcceEEEe
Confidence 999999999
No 90
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.94 E-value=6.7e-25 Score=249.86 Aligned_cols=257 Identities=25% Similarity=0.450 Sum_probs=221.2
Q ss_pred CCCCCCcceeccCCcceeeeee-eecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECC
Q 003840 486 PRDAGGRGMDVSQGFSFKEANS-VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSP 564 (792)
Q Consensus 486 ~~d~~~~~~d~~~~~~~~~~~~-l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fsp 564 (792)
..+.+.+.|+...+ ..+.. +.+|.+.|++++|..-+.+|++|+.|.+++|||+.++.+...+.+|.+.|.++...+
T Consensus 225 s~~~tl~~~~~~~~---~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~ 301 (537)
T KOG0274|consen 225 SDDSTLHLWDLNNG---YLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTIDP 301 (537)
T ss_pred CCCceeEEeecccc---eEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEccC
Confidence 34445556665554 45566 999999999999998788999999999999999999999999999999999998764
Q ss_pred CCCeEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCCeeEEE
Q 003840 565 SMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMR 644 (792)
Q Consensus 565 dg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~ 644 (792)
.++++|+.|.+|+||++.+ +..+..+.+|.+.|.++.++ ..++++|+.|++|++||+.++++++.+.++...+.
T Consensus 302 --~~~~sgs~D~tVkVW~v~n-~~~l~l~~~h~~~V~~v~~~---~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~ 375 (537)
T KOG0274|consen 302 --FLLVSGSRDNTVKVWDVTN-GACLNLLRGHTGPVNCVQLD---EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVY 375 (537)
T ss_pred --ceEeeccCCceEEEEeccC-cceEEEeccccccEEEEEec---CCEEEEEecCceEEEEEhhhceeeeeecCCcceEE
Confidence 4788899999999999997 78899999999999999998 34777999999999999999999999987654432
Q ss_pred -EecCC-CEEEEEEcCCeEEEEECCCC-eEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEee
Q 003840 645 -FQPHL-GRYLAAAAENVVSILDAETQ-ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELS 720 (792)
Q Consensus 645 -~sp~~-~~lla~s~dg~I~i~D~~t~-~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~ 720 (792)
+..+. ..++.|+.|+.|++||+++. +++.++.+|..-|.++. ..+++|++++.| .|++||+.++ .+++.+.
T Consensus 376 sl~~~~~~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~--~~~~~Lvs~~aD~~Ik~WD~~~~---~~~~~~~ 450 (537)
T KOG0274|consen 376 SLIVDSENRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLL--LRDNFLVSSSADGTIKLWDAEEG---ECLRTLE 450 (537)
T ss_pred EEEecCcceEEeeeeccceEeecCCchhhhhhhhcCCcccccccc--cccceeEeccccccEEEeecccC---ceeeeec
Confidence 24444 89999999999999999999 99999999999886665 457899999999 9999999877 7777777
Q ss_pred c-CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE
Q 003840 721 C-NGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM 758 (792)
Q Consensus 721 ~-~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~ 758 (792)
+ +...+..+++. ...+++++.++.+++||++++...
T Consensus 451 ~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~ 487 (537)
T KOG0274|consen 451 GRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLI 487 (537)
T ss_pred cCCcccEEEeecC--cceEEEEecCCeeEEEecccCchh
Confidence 7 56778777776 567999999999999999999877
No 91
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=1.6e-24 Score=218.55 Aligned_cols=269 Identities=18% Similarity=0.254 Sum_probs=216.8
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcee
Q 003840 511 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSL 590 (792)
Q Consensus 511 H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i 590 (792)
..+.|..+.|++.+..|++++.||++++||+........+ .|..++.+++|.+ ...+++|+.||.|+++|+.+. ..
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~-~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~--~~ 87 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKF-KHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTG--NE 87 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhe-ecCCceeeeeccC-CceEEEeccCceEEEEEecCC--cc
Confidence 3567999999999999999999999999999987555544 4889999999997 458999999999999999973 34
Q ss_pred EEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCe
Q 003840 591 RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQA 670 (792)
Q Consensus 591 ~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~ 670 (792)
..+..|...|.||.+++..+ .+++|++|++|++||.+.......+.......+.+..++.|++|+.+..|.+||+++..
T Consensus 88 ~~igth~~~i~ci~~~~~~~-~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~~ 166 (323)
T KOG1036|consen 88 DQIGTHDEGIRCIEYSYEVG-CVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVSGNRLVVGTSDRKVLIYDLRNLD 166 (323)
T ss_pred eeeccCCCceEEEEeeccCC-eEEEcccCccEEEEeccccccccccccCceEEEEeccCCEEEEeecCceEEEEEccccc
Confidence 55667999999999997654 56699999999999999876776776666667788888999999999999999999876
Q ss_pred EEEEecC--CCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCC-CcceEEEeecCC---------CceEEEEEeCCCCE
Q 003840 671 CRLSLQG--HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGS-EGECVHELSCNG---------NKFHSCVFHPTYPS 737 (792)
Q Consensus 671 ~~~~l~~--h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~-~~~~i~~~~~~~---------~~i~si~fspdg~~ 737 (792)
....... .+-.++||++.|++.-+++++-+ .|.+=.+.... .......+++|. .+|.+++|+|-...
T Consensus 167 ~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~t 246 (323)
T KOG1036|consen 167 EPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGT 246 (323)
T ss_pred chhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccce
Confidence 5553322 34568999999988766666665 66664444321 112333444443 35899999999999
Q ss_pred EEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEeC
Q 003840 738 LLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASH 784 (792)
Q Consensus 738 L~sgs~dg~I~IwDl~~~~~~-~~~~h~~~V~sl~fspdg~~LaSgs~ 784 (792)
|++|+.||.|.+||+.+.+.+ .+...+..|.+++|+.||..||+++.
T Consensus 247 faTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 247 FATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred EEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 999999999999999988877 56666788999999999999999874
No 92
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.94 E-value=1.6e-25 Score=232.77 Aligned_cols=258 Identities=22% Similarity=0.383 Sum_probs=221.6
Q ss_pred CCCCCCCCcceeccCCcceeeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEEC
Q 003840 484 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFS 563 (792)
Q Consensus 484 ~~~~d~~~~~~d~~~~~~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fs 563 (792)
+++.|..++.|++.... ...+.+|.+..+.|+.+.|.+++++++++++|+.+++|+++......+|.+|.+.|+++.|.
T Consensus 192 tgg~Dr~Ik~W~v~~~k-~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~ 270 (459)
T KOG0288|consen 192 TGGSDRIIKLWNVLGEK-SELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFK 270 (459)
T ss_pred hcchhhhhhhhhcccch-hhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhh
Confidence 45566667777776554 66888999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee--CCee
Q 003840 564 PSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK--GGTA 641 (792)
Q Consensus 564 pdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~--~~~~ 641 (792)
.....+++|+.|.+|++||+.+ .++.+++. ....+.+|+.. ...+++|-.|+.|++||++...++.... +.+.
T Consensus 271 ~~~~~vVsgs~DRtiK~WDl~k-~~C~kt~l-~~S~cnDI~~~---~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vt 345 (459)
T KOG0288|consen 271 LSHSRVVSGSADRTIKLWDLQK-AYCSKTVL-PGSQCNDIVCS---ISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVT 345 (459)
T ss_pred ccccceeeccccchhhhhhhhh-hheecccc-ccccccceEec---ceeeeecccccceEEEeccCCceeeEeecCccee
Confidence 8877799999999999999997 66666655 34456667665 3457799999999999999999888765 5678
Q ss_pred EEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCC----CCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceE
Q 003840 642 QMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGH----TKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECV 716 (792)
Q Consensus 642 ~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h----~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i 716 (792)
++..++++..+++++.|..+.++|+++...+..+... ...++.++|+|++.|+++|+.| .|+||++.++ ++.
T Consensus 346 Sl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tg---KlE 422 (459)
T KOG0288|consen 346 SLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTG---KLE 422 (459)
T ss_pred eEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCc---eEE
Confidence 8999999999999999999999999999888777542 2347889999999999999999 9999999887 455
Q ss_pred EEeecCCC--ceEEEEEeCCCCEEEEEEcCCeEEEE
Q 003840 717 HELSCNGN--KFHSCVFHPTYPSLLVIGCYQSLELW 750 (792)
Q Consensus 717 ~~~~~~~~--~i~si~fspdg~~L~sgs~dg~I~Iw 750 (792)
..+..... .|++++|+|.|.++++++.++.+.+|
T Consensus 423 ~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 423 KVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred EEeccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence 54444433 59999999999999999999999999
No 93
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=1.5e-24 Score=228.42 Aligned_cols=277 Identities=19% Similarity=0.282 Sum_probs=223.8
Q ss_pred eeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeE----E-------------e-ccCCCCEEEEEECCCC
Q 003840 505 ANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKT----N-------------L-EEHSSLITDVRFSPSM 566 (792)
Q Consensus 505 ~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~----~-------------l-~~h~~~V~~i~fspdg 566 (792)
+..+..|.-+|+||++++|++++++++.|++|.-|++.+++... + - +.|...|.+++.++|+
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence 67788999999999999999999999999999999998776431 1 0 2688899999999999
Q ss_pred CeEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCC---eeEE
Q 003840 567 PRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---TAQM 643 (792)
Q Consensus 567 ~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~---~~~v 643 (792)
+|||+|+.|..|.||+.++ ...+..+.+|.+.|.+++|-..... +++++.|+.|++|++.....+.++.++ +..+
T Consensus 215 kylatgg~d~~v~Iw~~~t-~ehv~~~~ghr~~V~~L~fr~gt~~-lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~I 292 (479)
T KOG0299|consen 215 KYLATGGRDRHVQIWDCDT-LEHVKVFKGHRGAVSSLAFRKGTSE-LYSASADRSVKVWSIDQLSYVETLYGHQDGVLGI 292 (479)
T ss_pred cEEEecCCCceEEEecCcc-cchhhcccccccceeeeeeecCccc-eeeeecCCceEEEehhHhHHHHHHhCCccceeee
Confidence 9999999999999999998 7788889999999999999866544 458999999999999988877766554 4555
Q ss_pred EEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEee--
Q 003840 644 RFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELS-- 720 (792)
Q Consensus 644 ~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~-- 720 (792)
........+-+++.|.++++|++ ..+....+.++.+.+.|++|..+ ..|++|+++ .|.+|++.+.+ ++....
T Consensus 293 daL~reR~vtVGgrDrT~rlwKi-~eesqlifrg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKk---plf~~~~A 367 (479)
T KOG0299|consen 293 DALSRERCVTVGGRDRTVRLWKI-PEESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKKK---PLFTSRLA 367 (479)
T ss_pred chhcccceEEeccccceeEEEec-cccceeeeeCCCCCeeeEEEecc-cceeeccCCceEEEeeecccC---ceeEeecc
Confidence 55666666667779999999999 44555667788999999999754 567788888 99999997653 332221
Q ss_pred ----------cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCC----cEEEEcccCCCeEEEEEeCCCCEEEEE-eCC
Q 003840 721 ----------CNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSEN----KTMTLTAHEGLIAALAVSTETGYVASA-SHD 785 (792)
Q Consensus 721 ----------~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~----~~~~~~~h~~~V~sl~fspdg~~LaSg-s~D 785 (792)
.+..+|++++..|..+.+++|+.+|.|++|-+.++ .++....-.+.|++|+|+++|++|++| +..
T Consensus 368 Hgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivagiGkE 447 (479)
T KOG0299|consen 368 HGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGKRIVAGIGKE 447 (479)
T ss_pred ccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecccccEEEEEEEccCCCEEEEecccc
Confidence 11237999999999999999999999999999887 233334577899999999999965554 444
Q ss_pred CcE
Q 003840 786 KFV 788 (792)
Q Consensus 786 G~I 788 (792)
..+
T Consensus 448 hRl 450 (479)
T KOG0299|consen 448 HRL 450 (479)
T ss_pred ccc
Confidence 443
No 94
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.93 E-value=3.6e-24 Score=211.67 Aligned_cols=248 Identities=18% Similarity=0.234 Sum_probs=207.0
Q ss_pred eeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeC-----CCcE
Q 003840 504 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF-----DKTV 578 (792)
Q Consensus 504 ~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~-----Dg~V 578 (792)
.+.+++||++.|+||+.+.+.++|++|+.|.+++|||+++|+.+..++ ....|..+.|+++|++++.+.. .+.|
T Consensus 44 rlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v 122 (327)
T KOG0643|consen 44 RLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFV 122 (327)
T ss_pred eeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEE
Confidence 567889999999999999999999999999999999999999999987 4567999999999998877754 4679
Q ss_pred EEEeCCCC------CceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEE----eeCCeeEEEEecC
Q 003840 579 RVWDADNP------GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV----FKGGTAQMRFQPH 648 (792)
Q Consensus 579 ~IWdl~s~------~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~----~~~~~~~v~~sp~ 648 (792)
.++|++.. ..++..+..+...|+...|.|.++.+ ++|.+||.|.+||++++..+.. +...++.+.++++
T Consensus 123 ~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~i-i~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d 201 (327)
T KOG0643|consen 123 SVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETI-IAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRD 201 (327)
T ss_pred EEEEccCChhhhcccCceEEecCCccceeeeeecccCCEE-EEecCCCcEEEEEcccCceeeechhhhccccccccccCC
Confidence 99999842 34577777888999999999998755 4999999999999999865432 3457888999999
Q ss_pred CCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC---eEEEEECCCCCC---------cceE
Q 003840 649 LGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED---SVRVWTVGSGSE---------GECV 716 (792)
Q Consensus 649 ~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d---~I~IwDl~s~~~---------~~~i 716 (792)
..++++++.|..-++||.++..+++++. ...+|++.+++|..++++.++.- .|.-=+.+.++. .+.+
T Consensus 202 ~T~FiT~s~Dttakl~D~~tl~v~Kty~-te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEi 280 (327)
T KOG0643|consen 202 RTYFITGSKDTTAKLVDVRTLEVLKTYT-TERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEI 280 (327)
T ss_pred cceEEecccCccceeeeccceeeEEEee-ecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHh
Confidence 9999999999999999999999999987 56899999999987777666543 233333332211 1445
Q ss_pred EEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 003840 717 HELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSE 754 (792)
Q Consensus 717 ~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~ 754 (792)
..+.+|-++|++++|+|+|+..++|+.||.|++.-++.
T Consensus 281 grvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 281 GRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred ccccccccCcceeEECCCCcccccCCCCceEEEEEecc
Confidence 67889999999999999999999999999999986543
No 95
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.93 E-value=3.4e-23 Score=221.56 Aligned_cols=262 Identities=13% Similarity=0.112 Sum_probs=204.1
Q ss_pred CCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeE-EEEeCCCcEEEEeCCCCCceeEEecccCCCeEE
Q 003840 524 GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRL-ATSSFDKTVRVWDADNPGYSLRTFMGHSASVMS 602 (792)
Q Consensus 524 g~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~L-asgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~s 602 (792)
++++++++.|+.|++||+.+++.+..+..+. .+.+++|+|+++.+ ++++.++.|++||+.+ +..+..+..+. .+..
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~-~~~~~~~~~~~-~~~~ 77 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLAT-GEVIGTLPSGP-DPEL 77 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCC-CcEEEeccCCC-CccE
Confidence 3578899999999999999999888887654 46789999999876 5667889999999987 45555555443 3568
Q ss_pred EEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeC--CeeEEEEecCCCEEEEEEcCC-eEEEEECCCCeEEEEecCCC
Q 003840 603 LDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYLAAAAEN-VVSILDAETQACRLSLQGHT 679 (792)
Q Consensus 603 l~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~--~~~~v~~sp~~~~lla~s~dg-~I~i~D~~t~~~~~~l~~h~ 679 (792)
++|+|+++.++++++.|+.|++||+.+.+.+..+.. ....++|+|++..++++..++ .+.+||.++++.+..+.. .
T Consensus 78 ~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~ 156 (300)
T TIGR03866 78 FALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV-D 156 (300)
T ss_pred EEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc-C
Confidence 899999987877777899999999999888777753 357799999999998888765 577889998877665442 2
Q ss_pred CCeEEEEEcCCCCEEEEEe-CC-eEEEEECCCCCCcceEEEeecC-------CCceEEEEEeCCCCEEEEE-EcCCeEEE
Q 003840 680 KPIDSVCWDPSGELLASVS-ED-SVRVWTVGSGSEGECVHELSCN-------GNKFHSCVFHPTYPSLLVI-GCYQSLEL 749 (792)
Q Consensus 680 ~~V~sv~~spdg~~Las~s-~d-~I~IwDl~s~~~~~~i~~~~~~-------~~~i~si~fspdg~~L~sg-s~dg~I~I 749 (792)
..+.+++|++++.+|++++ .+ .|++||+++++ .+..+..+ ......++|+|++++++++ +.++.|.+
T Consensus 157 ~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v 233 (300)
T TIGR03866 157 QRPRFAEFTADGKELWVSSEIGGTVSVIDVATRK---VIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAV 233 (300)
T ss_pred CCccEEEECCCCCEEEEEcCCCCEEEEEEcCcce---eeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEE
Confidence 3457899999999886554 35 99999998763 33333211 1124568899999986664 45678999
Q ss_pred EECCCCcEEEEcccCCCeEEEEEeCCCCEEEEE-eCCCcEEEeC
Q 003840 750 WNMSENKTMTLTAHEGLIAALAVSTETGYVASA-SHDKFVKLWK 792 (792)
Q Consensus 750 wDl~~~~~~~~~~h~~~V~sl~fspdg~~LaSg-s~DG~I~IWd 792 (792)
||+.+++.+....+...+.+++|+|++++|+++ +.+|.|+|||
T Consensus 234 ~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d 277 (300)
T TIGR03866 234 VDAKTYEVLDYLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVID 277 (300)
T ss_pred EECCCCcEEEEEEeCCCcceEEECCCCCEEEEEcCCCCeEEEEE
Confidence 999998877554556689999999999999876 4689999997
No 96
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=3.6e-24 Score=216.14 Aligned_cols=257 Identities=21% Similarity=0.379 Sum_probs=208.6
Q ss_pred EEEEEeCCCeEEEEECCC------------CceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEe
Q 003840 526 LLATGGHDKKAVLWHTDT------------LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTF 593 (792)
Q Consensus 526 ~Lasgs~Dg~I~vWdl~t------------~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~ 593 (792)
.|++|++...|.-+++.- ...+..+..|.+.|++++.+ +.++|+|+.|.+|+|||+.+ ...+..+
T Consensus 3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k-~~qlg~l 79 (362)
T KOG0294|consen 3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRK-RKQLGIL 79 (362)
T ss_pred eEEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccc-hhhhcce
Confidence 467777777777776642 12345567899999999984 78999999999999999997 6677788
Q ss_pred cccCCCeEEEEEcCCCC--eEEEEEeCCCcEEEEEcCCCeeEEEeeC---CeeEEEEecCCCEEEEEEcCCeEEEEECCC
Q 003840 594 MGHSASVMSLDFHPNKD--DLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAAENVVSILDAET 668 (792)
Q Consensus 594 ~~h~~~V~sl~fspd~~--~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~sp~~~~lla~s~dg~I~i~D~~t 668 (792)
..|.+.|+++.|.+.-. +|| +|+.||.|.+|+....+++..++. .++.++++|.++..++.+.|+.+++||+-+
T Consensus 80 l~HagsitaL~F~~~~S~shLl-S~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~ 158 (362)
T KOG0294|consen 80 LSHAGSITALKFYPPLSKSHLL-SGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVR 158 (362)
T ss_pred eccccceEEEEecCCcchhhee-eecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhc
Confidence 88999999999988753 555 999999999999999988887764 578899999999999999999999999999
Q ss_pred CeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEE
Q 003840 669 QACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLE 748 (792)
Q Consensus 669 ~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~ 748 (792)
++.-+.+.-. ..-+.|.|+|.|.+++.+..+.|-||.+.+. ..+.++.. ...+.++.| -++.+|++|+.++.|.
T Consensus 159 Gr~a~v~~L~-~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A---~v~~~i~~-~~r~l~~~~-l~~~~L~vG~d~~~i~ 232 (362)
T KOG0294|consen 159 GRVAFVLNLK-NKATLVSWSPQGDHFVVSGRNKIDIYQLDNA---SVFREIEN-PKRILCATF-LDGSELLVGGDNEWIS 232 (362)
T ss_pred CccceeeccC-CcceeeEEcCCCCEEEEEeccEEEEEecccH---hHhhhhhc-cccceeeee-cCCceEEEecCCceEE
Confidence 8776665532 2234499999999999999999999998764 22222222 233555554 4667899999999999
Q ss_pred EEECCCCcEE-EEcccCCCeEEEEE--eCCCCEEEEEeCCCcEEEeC
Q 003840 749 LWNMSENKTM-TLTAHEGLIAALAV--STETGYVASASHDKFVKLWK 792 (792)
Q Consensus 749 IwDl~~~~~~-~~~~h~~~V~sl~f--spdg~~LaSgs~DG~I~IWd 792 (792)
+||.+...+. .+.+|...|-++.+ .|++.||+|++.||.|+|||
T Consensus 233 ~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd 279 (362)
T KOG0294|consen 233 LKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWD 279 (362)
T ss_pred EeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEE
Confidence 9999987776 77899999999985 46788999999999999997
No 97
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=2.3e-24 Score=217.14 Aligned_cols=275 Identities=20% Similarity=0.313 Sum_probs=222.3
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEec
Q 003840 515 VICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM 594 (792)
Q Consensus 515 V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~ 594 (792)
..||.|++.|.+||+|+.||.|.|||+.|...-+.+.+|..+|++++|++||++|+|++.|..|.+||+.. +.++..+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~-gs~l~rir 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLK-GSPLKRIR 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccC-CCceeEEE
Confidence 78999999999999999999999999999999999999999999999999999999999999999999998 44666554
Q ss_pred ccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEE--E-----eeCCeeEEEEecCCCEEEEEEcCCeEEEEECC
Q 003840 595 GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR--V-----FKGGTAQMRFQPHLGRYLAAAAENVVSILDAE 667 (792)
Q Consensus 595 ~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~--~-----~~~~~~~v~~sp~~~~lla~s~dg~I~i~D~~ 667 (792)
...+|+...|+|...+.++++-.+..-.+.++...+... . +.....+..|.+.++++++|...|.+.+||.+
T Consensus 105 -f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~ 183 (405)
T KOG1273|consen 105 -FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAE 183 (405)
T ss_pred -ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecc
Confidence 678999999999887777666666656666665432211 1 11122334688999999999999999999999
Q ss_pred CCeEEEEecCCC-CCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCC------CcceEEEee--cCCCceEEEEEeCCCCE
Q 003840 668 TQACRLSLQGHT-KPIDSVCWDPSGELLASVSED-SVRVWTVGSGS------EGECVHELS--CNGNKFHSCVFHPTYPS 737 (792)
Q Consensus 668 t~~~~~~l~~h~-~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~------~~~~i~~~~--~~~~~i~si~fspdg~~ 737 (792)
+.+++..++-.. ..|..|.|+..|++|+..+.| .|+.|+++.-. +.+..+.+. .......+|+|+.+|.|
T Consensus 184 t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeY 263 (405)
T KOG1273|consen 184 TLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEY 263 (405)
T ss_pred hheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccE
Confidence 999998887655 779999999999999999999 99999986321 111111111 12334678999999999
Q ss_pred EEEEEcC-CeEEEEECCCCcEE-EEcccC-CCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003840 738 LLVIGCY-QSLELWNMSENKTM-TLTAHE-GLIAALAVSTETGYVASASHDKFVKLWK 792 (792)
Q Consensus 738 L~sgs~d-g~I~IwDl~~~~~~-~~~~h~-~~V~sl~fspdg~~LaSgs~DG~I~IWd 792 (792)
+++++.. ..++||....|.++ .+.+.+ .....+.|+|-...|++- ..|.|+||.
T Consensus 264 v~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~ 320 (405)
T KOG1273|consen 264 VCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWA 320 (405)
T ss_pred EEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceEEEE
Confidence 9988754 48999999999988 455655 567889999998888877 789999993
No 98
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.93 E-value=2.9e-24 Score=235.69 Aligned_cols=273 Identities=18% Similarity=0.310 Sum_probs=228.4
Q ss_pred eeeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCcee--EEeccCCCCEEE-EEECC-CCCeEEEEeCCCc
Q 003840 502 FKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSK--TNLEEHSSLITD-VRFSP-SMPRLATSSFDKT 577 (792)
Q Consensus 502 ~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~--~~l~~h~~~V~~-i~fsp-dg~~Lasgs~Dg~ 577 (792)
++..+.+.+|...|..+++.++. .+++++.||++++|+-.....+ ..+.+|.+.|.+ ++|.+ ++..|++|+.|++
T Consensus 4 Y~ls~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~ 82 (745)
T KOG0301|consen 4 YKLSHELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTT 82 (745)
T ss_pred ceeEEEeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccce
Confidence 56678899999999999877665 8999999999999997654443 456778888887 88886 4457999999999
Q ss_pred EEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeC---CeeEEEEecCCCEEEE
Q 003840 578 VRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLA 654 (792)
Q Consensus 578 V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~sp~~~~lla 654 (792)
|.+|.+.. ..++.++.+|...|.|+....++. +++|+.|.++++|-+. ++...+.+ .+..+.+.|.. .+++
T Consensus 83 i~v~~~~~-~~P~~~LkgH~snVC~ls~~~~~~--~iSgSWD~TakvW~~~--~l~~~l~gH~asVWAv~~l~e~-~~vT 156 (745)
T KOG0301|consen 83 IIVFKLSQ-AEPLYTLKGHKSNVCSLSIGEDGT--LISGSWDSTAKVWRIG--ELVYSLQGHTASVWAVASLPEN-TYVT 156 (745)
T ss_pred EEEEecCC-CCchhhhhccccceeeeecCCcCc--eEecccccceEEecch--hhhcccCCcchheeeeeecCCC-cEEe
Confidence 99999987 788999999999999999877754 6699999999999875 34444444 45567777776 9999
Q ss_pred EEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeC
Q 003840 655 AAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHP 733 (792)
Q Consensus 655 ~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fsp 733 (792)
|+.|..|++|.- ++++.+|.+|.+.|+.+++-+++.+ ++|+.| .|++|++ ++ .++.++.+|.+.++++....
T Consensus 157 gsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~f-lScsNDg~Ir~w~~-~g---e~l~~~~ghtn~vYsis~~~ 229 (745)
T KOG0301|consen 157 GSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSHF-LSCSNDGSIRLWDL-DG---EVLLEMHGHTNFVYSISMAL 229 (745)
T ss_pred ccCcceeeeccC--CchhhhhccchhheeeeEEecCCCe-EeecCCceEEEEec-cC---ceeeeeeccceEEEEEEecC
Confidence 999999999986 7888999999999999999887654 556666 9999999 34 79999999999999999888
Q ss_pred CCCEEEEEEcCCeEEEEECCCCcEEEEcccCC-CeEEEEEeCCCCEEEEEeCCCcEEEe
Q 003840 734 TYPSLLVIGCYQSLELWNMSENKTMTLTAHEG-LIAALAVSTETGYVASASHDKFVKLW 791 (792)
Q Consensus 734 dg~~L~sgs~dg~I~IwDl~~~~~~~~~~h~~-~V~sl~fspdg~~LaSgs~DG~I~IW 791 (792)
++..|++++.|++++||+.. ++.....|.. .|+++++-++|. |++|+.||.||||
T Consensus 230 ~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVf 285 (745)
T KOG0301|consen 230 SDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVF 285 (745)
T ss_pred CCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCC-EEEeccCceEEEE
Confidence 88899999999999999987 5665555555 899999988886 5578889999998
No 99
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.93 E-value=1.2e-23 Score=222.59 Aligned_cols=276 Identities=18% Similarity=0.296 Sum_probs=232.5
Q ss_pred ecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC---ceeEEec--cCCCCEEEEEECCCCCeEEEEeCCCcEEEEeC
Q 003840 509 RASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL---KSKTNLE--EHSSLITDVRFSPSMPRLATSSFDKTVRVWDA 583 (792)
Q Consensus 509 ~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~---~~~~~l~--~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl 583 (792)
-.|..-|.++.+|...++++||+ .|.|+|||+... ..+..+. .....|+++.+.|||+.|++|++-.+|.|||+
T Consensus 416 L~HGEvVcAvtIS~~trhVyTgG-kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDL 494 (705)
T KOG0639|consen 416 LAHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDL 494 (705)
T ss_pred hccCcEEEEEEecCCcceeEecC-CCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeec
Confidence 36888888899999999999997 678999999643 3344443 24678999999999999999999999999999
Q ss_pred CCCCceeE-EecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeC---CeeEEEEecCCCEEEEEEcCC
Q 003840 584 DNPGYSLR-TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAAEN 659 (792)
Q Consensus 584 ~s~~~~i~-~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~sp~~~~lla~s~dg 659 (792)
..+...++ .+....-.+.+++.+||.+ +.++|..||.|.|||+.+...++.|.+ +..|+.++++|.+|.+|+-|+
T Consensus 495 AapTprikaeltssapaCyALa~spDak-vcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDn 573 (705)
T KOG0639|consen 495 AAPTPRIKAELTSSAPACYALAISPDAK-VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDN 573 (705)
T ss_pred cCCCcchhhhcCCcchhhhhhhcCCccc-eeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCcc
Confidence 87554443 2333345577899999976 555888899999999999999999875 578999999999999999999
Q ss_pred eEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEE
Q 003840 660 VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSL 738 (792)
Q Consensus 660 ~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L 738 (792)
+|+.||+++++.+.... ....|.++.++|.+++|++|-++ .+.|...... ..+.+.-|+..|.++.|.+.|+++
T Consensus 574 tvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~skp----~kyqlhlheScVLSlKFa~cGkwf 648 (705)
T KOG0639|consen 574 TVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKP----EKYQLHLHESCVLSLKFAYCGKWF 648 (705)
T ss_pred ceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecccCcEEEEecCCc----cceeecccccEEEEEEecccCcee
Confidence 99999999987665433 45679999999999999999988 8888776542 344566788999999999999999
Q ss_pred EEEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEe
Q 003840 739 LVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLW 791 (792)
Q Consensus 739 ~sgs~dg~I~IwDl~~~~~~~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IW 791 (792)
++.+.|+.+..|...-+..+.-......|.++.++.|.+||+||+.|....||
T Consensus 649 vStGkDnlLnawrtPyGasiFqskE~SsVlsCDIS~ddkyIVTGSGdkkATVY 701 (705)
T KOG0639|consen 649 VSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISFDDKYIVTGSGDKKATVY 701 (705)
T ss_pred eecCchhhhhhccCccccceeeccccCcceeeeeccCceEEEecCCCcceEEE
Confidence 99999999999999999888777788899999999999999999999887776
No 100
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.93 E-value=3.6e-24 Score=214.99 Aligned_cols=290 Identities=14% Similarity=0.246 Sum_probs=227.0
Q ss_pred ceEEEEeCCCeeeecCCC---eeEeCCCcchhhcccccccCCCCCCceeeeccCCCCCCCCCCCcceeccCCcceeeeee
Q 003840 431 PLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANS 507 (792)
Q Consensus 431 ~~l~~s~Dg~~~~ss~s~---~lWD~~tg~~~~~~~~~~~~g~~d~~v~~~l~~d~~~~~d~~~~~~d~~~~~~~~~~~~ 507 (792)
..-.|++||..+++++.+ +|.|++..--+.....+.. + + .......+++
T Consensus 116 R~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~-~------------------~---------~qa~hPvIRT 167 (430)
T KOG0640|consen 116 RAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMIS-G------------------D---------TQARHPVIRT 167 (430)
T ss_pred eeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhcc-C------------------C---------cccCCceEee
Confidence 356899999999887655 7877653211110000000 0 0 0111246788
Q ss_pred eecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEec--cCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCC
Q 003840 508 VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE--EHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN 585 (792)
Q Consensus 508 l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~--~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s 585 (792)
|-.|.+.|+++.|+|....|++|+.|++|++||+.....++.++ .....|.+|.|+|.|.+|++|....++++||+++
T Consensus 168 lYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T 247 (430)
T KOG0640|consen 168 LYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNT 247 (430)
T ss_pred hhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccc
Confidence 99999999999999999999999999999999998655444433 3567899999999999999999999999999997
Q ss_pred CCceeEEe---cccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeC-----CeeEEEEecCCCEEEEEEc
Q 003840 586 PGYSLRTF---MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG-----GTAQMRFQPHLGRYLAAAA 657 (792)
Q Consensus 586 ~~~~i~~~---~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~-----~~~~v~~sp~~~~lla~s~ 657 (792)
..+...- ..|.+.|+++.+++.++ +.++++.||.|++||--+++|++.+.. .+.+..|..+++++++.+.
T Consensus 248 -~QcfvsanPd~qht~ai~~V~Ys~t~~-lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~ 325 (430)
T KOG0640|consen 248 -YQCFVSANPDDQHTGAITQVRYSSTGS-LYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGK 325 (430)
T ss_pred -eeEeeecCcccccccceeEEEecCCcc-EEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCC
Confidence 3333222 36899999999999976 566999999999999999999988752 4566789999999999999
Q ss_pred CCeEEEEECCCCeEEEEecCCC--C---CeEEEEEcCCCCEEEEEeCC--eEEEEECCCCCCcceEEEeecCCCceEEEE
Q 003840 658 ENVVSILDAETQACRLSLQGHT--K---PIDSVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSCNGNKFHSCV 730 (792)
Q Consensus 658 dg~I~i~D~~t~~~~~~l~~h~--~---~V~sv~~spdg~~Las~s~d--~I~IwDl~s~~~~~~i~~~~~~~~~i~si~ 730 (792)
|..|++|.+.+++++..+.+-. + --+...|+....|++.-.+. .++-||.++..... ..-.+|.+.+..+.
T Consensus 326 DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~--l~slgHn~a~R~i~ 403 (430)
T KOG0640|consen 326 DSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVA--LLSLGHNGAVRWIV 403 (430)
T ss_pred cceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhh--hcccCCCCCceEEE
Confidence 9999999999999999887631 1 12345688888888887766 79999998864322 22346889999999
Q ss_pred EeCCCCEEEEEEcCCeEEEEEC
Q 003840 731 FHPTYPSLLVIGCYQSLELWNM 752 (792)
Q Consensus 731 fspdg~~L~sgs~dg~I~IwDl 752 (792)
-+|.+..+++++.|..+++|--
T Consensus 404 HSP~~p~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 404 HSPVEPAFMTCSDDFRARFWYR 425 (430)
T ss_pred eCCCCCceeeecccceeeeeee
Confidence 9999999999999999999964
No 101
>PTZ00420 coronin; Provisional
Probab=99.93 E-value=5e-23 Score=235.33 Aligned_cols=239 Identities=15% Similarity=0.210 Sum_probs=180.6
Q ss_pred CCCcceeccCCcceeeeeeeecCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEECCCCc--------eeEEeccCCCCEEE
Q 003840 489 AGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSD-GKLLATGGHDKKAVLWHTDTLK--------SKTNLEEHSSLITD 559 (792)
Q Consensus 489 ~~~~~~d~~~~~~~~~~~~l~~H~~~V~~lafspd-g~~Lasgs~Dg~I~vWdl~t~~--------~~~~l~~h~~~V~~ 559 (792)
..+++|+.... ..+..+.+|.+.|.+++|+|+ +.+||+|+.||+|+|||+.++. .+..+.+|...|.+
T Consensus 54 gvI~L~~~~r~---~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~s 130 (568)
T PTZ00420 54 GAIRLENQMRK---PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISI 130 (568)
T ss_pred eEEEeeecCCC---ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEE
Confidence 34445544332 467788999999999999996 7899999999999999997642 34467889999999
Q ss_pred EEECCCCCe-EEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeC
Q 003840 560 VRFSPSMPR-LATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG 638 (792)
Q Consensus 560 i~fspdg~~-Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~ 638 (792)
|+|+|++.. |++++.|++|+|||+++ +..+..+. |...|.+++|+++|. +|++++.|+.|+|||+++++.+..+.+
T Consensus 131 Vaf~P~g~~iLaSgS~DgtIrIWDl~t-g~~~~~i~-~~~~V~SlswspdG~-lLat~s~D~~IrIwD~Rsg~~i~tl~g 207 (568)
T PTZ00420 131 IDWNPMNYYIMCSSGFDSFVNIWDIEN-EKRAFQIN-MPKKLSSLKWNIKGN-LLSGTCVGKHMHIIDPRKQEIASSFHI 207 (568)
T ss_pred EEECCCCCeEEEEEeCCCeEEEEECCC-CcEEEEEe-cCCcEEEEEECCCCC-EEEEEecCCEEEEEECCCCcEEEEEec
Confidence 999998875 57899999999999997 44455554 567899999999987 556888899999999999998887765
Q ss_pred Cee---E-----EEEecCCCEEEEEEcCC----eEEEEECCC-CeEEEEec--CCCCCeEEEEEcCCCCEEEEEeCC-eE
Q 003840 639 GTA---Q-----MRFQPHLGRYLAAAAEN----VVSILDAET-QACRLSLQ--GHTKPIDSVCWDPSGELLASVSED-SV 702 (792)
Q Consensus 639 ~~~---~-----v~~sp~~~~lla~s~dg----~I~i~D~~t-~~~~~~l~--~h~~~V~sv~~spdg~~Las~s~d-~I 702 (792)
+.. . ..|+++++++++++.++ .|+|||+++ .+++..+. .+.+.+......++|.++++|+.| .|
T Consensus 208 H~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tI 287 (568)
T PTZ00420 208 HDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNC 287 (568)
T ss_pred ccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeE
Confidence 431 1 22457888999988764 799999996 45555443 233334444344568889899888 99
Q ss_pred EEEECCCCCCcceEEEeecCCCceEEEEEeCCC
Q 003840 703 RVWTVGSGSEGECVHELSCNGNKFHSCVFHPTY 735 (792)
Q Consensus 703 ~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg 735 (792)
++|++..+ ....+..+. +..++.+++|.|+.
T Consensus 288 r~~e~~~~-~~~~l~~~~-s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 288 RYYQHSLG-SIRKVNEYK-SCSPFRSFGFLPKQ 318 (568)
T ss_pred EEEEccCC-cEEeecccc-cCCCccceEEcccc
Confidence 99999765 223333333 45678889999864
No 102
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=1.7e-22 Score=194.98 Aligned_cols=248 Identities=19% Similarity=0.322 Sum_probs=206.6
Q ss_pred eeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-----eeEEeccCCCCEEEEEECCC----CCeEEEEe
Q 003840 503 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK-----SKTNLEEHSSLITDVRFSPS----MPRLATSS 573 (792)
Q Consensus 503 ~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~-----~~~~l~~h~~~V~~i~fspd----g~~Lasgs 573 (792)
...+.-+.|.+.|+|.+|+|+|.+||+|+.|++|++.-++... ....+.-|.+.|.+++|..+ +.+|++++
T Consensus 80 v~~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~g 159 (350)
T KOG0641|consen 80 VLCKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAG 159 (350)
T ss_pred EEeeeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecC
Confidence 4556678899999999999999999999999999997665332 23456679999999999763 34666654
Q ss_pred -CCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee----------CCeeE
Q 003840 574 -FDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK----------GGTAQ 642 (792)
Q Consensus 574 -~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~----------~~~~~ 642 (792)
.|..|++-|... +..+..+.+|.+.|.++--- +..+|++|+.|.+|++||++-..++.++. ..+..
T Consensus 160 agdc~iy~tdc~~-g~~~~a~sghtghilalysw--n~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaa 236 (350)
T KOG0641|consen 160 AGDCKIYITDCGR-GQGFHALSGHTGHILALYSW--NGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAA 236 (350)
T ss_pred CCcceEEEeecCC-CCcceeecCCcccEEEEEEe--cCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEE
Confidence 466777778876 77889999999999887422 24689999999999999999999888753 23567
Q ss_pred EEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCC-CcceEEEee
Q 003840 643 MRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGS-EGECVHELS 720 (792)
Q Consensus 643 v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~-~~~~i~~~~ 720 (792)
+++.|.+..++++-.|....+||++.++.+..+..|...|.|+.|+|...|+++|+.| .|++-|+...- ....+..+.
T Consensus 237 v~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ 316 (350)
T KOG0641|consen 237 VAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVA 316 (350)
T ss_pred EEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEE
Confidence 8899999999999999999999999999999999999999999999999999999999 99999986431 113445566
Q ss_pred cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 003840 721 CNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMS 753 (792)
Q Consensus 721 ~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~ 753 (792)
.|..++..|.|+|..-.+++.+.|.++.+|-+.
T Consensus 317 ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 317 EHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred eccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 788899999999999889999999999999764
No 103
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=6e-23 Score=208.31 Aligned_cols=245 Identities=20% Similarity=0.329 Sum_probs=204.5
Q ss_pred CceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEe-CCCcE
Q 003840 544 LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCD-GDGEI 622 (792)
Q Consensus 544 ~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs-~Dg~I 622 (792)
.+..+.+......|++|.|+++|.+|++++.|..|+|||..+ +..++++..++..|..++|......++.+.. .|.+|
T Consensus 4 ~~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~-g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tI 82 (311)
T KOG1446|consen 4 FRPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLS-GKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTI 82 (311)
T ss_pred cccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCC-CceeeEeecccccccEEEEecCCceEEEccCCCCCce
Confidence 445566666788999999999999999999999999999998 7888888888888999999777666664433 38899
Q ss_pred EEEEcCCCeeEEEeeCC---eeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeC
Q 003840 623 RYWSINNGSCTRVFKGG---TAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSE 699 (792)
Q Consensus 623 ~iwdl~~~~~~~~~~~~---~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~ 699 (792)
++.++.+.+.++.|.++ +..++.+|.++.+++++.|++|++||++..++...+.....+ .++|+|+|-++|++..
T Consensus 83 ryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~p--i~AfDp~GLifA~~~~ 160 (311)
T KOG1446|consen 83 RYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRP--IAAFDPEGLIFALANG 160 (311)
T ss_pred EEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCc--ceeECCCCcEEEEecC
Confidence 99999999999999875 677899999999999999999999999988877666543333 4789999999999998
Q ss_pred C-eEEEEECCCCCCcceEEEee---cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCC---eEEEE
Q 003840 700 D-SVRVWTVGSGSEGECVHELS---CNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGL---IAALA 771 (792)
Q Consensus 700 d-~I~IwDl~s~~~~~~i~~~~---~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~~~~h~~~---V~sl~ 771 (792)
. .|++||+++... .+...+. .....+..+.|+|||++|+.++..+.+++.|.-+|... .+..+... -...+
T Consensus 161 ~~~IkLyD~Rs~dk-gPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ 239 (311)
T KOG1446|consen 161 SELIKLYDLRSFDK-GPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSAT 239 (311)
T ss_pred CCeEEEEEecccCC-CCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEE
Confidence 8 999999998643 2222222 34667899999999999999999999999999999877 44444332 25778
Q ss_pred EeCCCCEEEEEeCCCcEEEeC
Q 003840 772 VSTETGYVASASHDKFVKLWK 792 (792)
Q Consensus 772 fspdg~~LaSgs~DG~I~IWd 792 (792)
|+||+++|++|+.||+|.||+
T Consensus 240 ftPds~Fvl~gs~dg~i~vw~ 260 (311)
T KOG1446|consen 240 FTPDSKFVLSGSDDGTIHVWN 260 (311)
T ss_pred ECCCCcEEEEecCCCcEEEEE
Confidence 999999999999999999996
No 104
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=2.4e-23 Score=209.12 Aligned_cols=229 Identities=17% Similarity=0.309 Sum_probs=188.8
Q ss_pred eeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCC--eEEEEeCCCcEEEEeC
Q 003840 506 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP--RLATSSFDKTVRVWDA 583 (792)
Q Consensus 506 ~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~--~Lasgs~Dg~V~IWdl 583 (792)
+....|.++|.|++|+.||..+++|+.|+.+++||+.++ .+..+..|.++|.++.|-+... .|+||+.|++|++||.
T Consensus 66 ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~-Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~ 144 (347)
T KOG0647|consen 66 KAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG-QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDT 144 (347)
T ss_pred hhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC-CeeeeeecccceeEEEEecCCCcceeEecccccceeeccc
Confidence 456688999999999999999999999999999999998 5677888999999999988766 8999999999999999
Q ss_pred CCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeE-E----EeeCCeeEEEEecCCCEEEEEEcC
Q 003840 584 DNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT-R----VFKGGTAQMRFQPHLGRYLAAAAE 658 (792)
Q Consensus 584 ~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~-~----~~~~~~~~v~~sp~~~~lla~s~d 658 (792)
+. ..++.++. ..+.|++++.-. .+++.+..+..|.+|+++.+... + .++--+.++++..+...++.|+-+
T Consensus 145 R~-~~pv~t~~-LPeRvYa~Dv~~---pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiE 219 (347)
T KOG0647|consen 145 RS-SNPVATLQ-LPERVYAADVLY---PMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIE 219 (347)
T ss_pred CC-CCeeeeee-ccceeeehhccC---ceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeec
Confidence 97 55555554 456777777653 36778888999999999765432 2 234457888888888888999999
Q ss_pred CeEEEEECCCC--eEEEEecCCCC---------CeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCce
Q 003840 659 NVVSILDAETQ--ACRLSLQGHTK---------PIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKF 726 (792)
Q Consensus 659 g~I~i~D~~t~--~~~~~l~~h~~---------~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i 726 (792)
|.+.|..++.+ +.-++|+.|.. .|++|+|+|....|++++.| ++.+||-... ..+.....+..+|
T Consensus 220 Grv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar---~kLk~s~~~~qpI 296 (347)
T KOG0647|consen 220 GRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDAR---TKLKTSETHPQPI 296 (347)
T ss_pred ceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhh---hhhhccCcCCCcc
Confidence 99999988876 55667776652 47889999988888888877 9999998654 5677777889999
Q ss_pred EEEEEeCCCCEEEEEEc
Q 003840 727 HSCVFHPTYPSLLVIGC 743 (792)
Q Consensus 727 ~si~fspdg~~L~sgs~ 743 (792)
++|+|+.+|.+++.+..
T Consensus 297 tcc~fn~~G~ifaYA~g 313 (347)
T KOG0647|consen 297 TCCSFNRNGSIFAYALG 313 (347)
T ss_pred ceeEecCCCCEEEEEee
Confidence 99999999998876643
No 105
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=1.4e-23 Score=221.12 Aligned_cols=280 Identities=22% Similarity=0.335 Sum_probs=220.2
Q ss_pred ceEEEEeCCCeeeecCCC---eeEeCCCcchhhcccccccCCCCCCceeeeccCCCCCCCCCCCcceeccCCcceeeeee
Q 003840 431 PLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANS 507 (792)
Q Consensus 431 ~~l~~s~Dg~~~~ss~s~---~lWD~~tg~~~~~~~~~~~~g~~d~~v~~~l~~d~~~~~d~~~~~~d~~~~~~~~~~~~ 507 (792)
-.+.+++|++++++++.+ .-|++.+|+-...+-...+. . -..+..+++-.
T Consensus 146 ~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev----------------------~----k~~~~~~k~~r- 198 (479)
T KOG0299|consen 146 TSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEV----------------------L----KSHGNPLKESR- 198 (479)
T ss_pred eEEEeeccccceeecCCCcceeeeehhcCcccccccccchh----------------------h----hhccCCCCccc-
Confidence 367889999998886655 44998888643221110000 0 00122222222
Q ss_pred eecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCC
Q 003840 508 VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG 587 (792)
Q Consensus 508 l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~ 587 (792)
++|...|.|++.|+||+|||+|+.|..|.||+..+.+.+..+.+|.+.|.+++|-.....|++++.|+.|++|+++. .
T Consensus 199 -~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~-~ 276 (479)
T KOG0299|consen 199 -KGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQ-L 276 (479)
T ss_pred -ccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhH-h
Confidence 49999999999999999999999999999999999999999999999999999999888999999999999999987 5
Q ss_pred ceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee---CCeeEEEEecCCCEEEEEEcCCeEEEE
Q 003840 588 YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLGRYLAAAAENVVSIL 664 (792)
Q Consensus 588 ~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~---~~~~~v~~sp~~~~lla~s~dg~I~i~ 664 (792)
..+.++.+|.+.|.+|....- ..++.+|+.|+++++|++..... .+|. +.+.|++|..+ ..+++|+.+|.|.+|
T Consensus 277 s~vetlyGHqd~v~~IdaL~r-eR~vtVGgrDrT~rlwKi~eesq-lifrg~~~sidcv~~In~-~HfvsGSdnG~IaLW 353 (479)
T KOG0299|consen 277 SYVETLYGHQDGVLGIDALSR-ERCVTVGGRDRTVRLWKIPEESQ-LIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALW 353 (479)
T ss_pred HHHHHHhCCccceeeechhcc-cceEEeccccceeEEEeccccce-eeeeCCCCCeeeEEEecc-cceeeccCCceEEEe
Confidence 677889999999999998765 45777788999999999954332 2232 34556666544 889999999999999
Q ss_pred ECCCCeEEEEecC-C-----------CCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCC-CcceEEEeecCCCceEEEE
Q 003840 665 DAETQACRLSLQG-H-----------TKPIDSVCWDPSGELLASVSED-SVRVWTVGSGS-EGECVHELSCNGNKFHSCV 730 (792)
Q Consensus 665 D~~t~~~~~~l~~-h-----------~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~-~~~~i~~~~~~~~~i~si~ 730 (792)
++-+.+++++... | ..+|++++..|..+++++|+.+ .|++|-+..+- ....+..+. -.+.|++++
T Consensus 354 s~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~ 432 (479)
T KOG0299|consen 354 SLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLA 432 (479)
T ss_pred eecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEE
Confidence 9999998887642 2 2389999999999999999988 99999998762 345555555 567899999
Q ss_pred EeCCCCEEEEEEc
Q 003840 731 FHPTYPSLLVIGC 743 (792)
Q Consensus 731 fspdg~~L~sgs~ 743 (792)
|+++|++|++|..
T Consensus 433 f~~sgk~ivagiG 445 (479)
T KOG0299|consen 433 FSNSGKRIVAGIG 445 (479)
T ss_pred EccCCCEEEEecc
Confidence 9999997777743
No 106
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.92 E-value=6.6e-24 Score=232.01 Aligned_cols=245 Identities=24% Similarity=0.335 Sum_probs=213.9
Q ss_pred eecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECC---CCCeEEEEeCCCcEEEEeCC
Q 003840 508 VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSP---SMPRLATSSFDKTVRVWDAD 584 (792)
Q Consensus 508 l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fsp---dg~~Lasgs~Dg~V~IWdl~ 584 (792)
.-+....|.|++.+|+|.+||+|..-|+|+||++...+....++.|...|.|+.|+. ..++||+++.|..|.|||+.
T Consensus 455 ~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~ 534 (1080)
T KOG1408|consen 455 TCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVK 534 (1080)
T ss_pred hcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecc
Confidence 345566799999999999999999999999999999999999999999999999987 35689999999999999999
Q ss_pred CCCceeEEecccCCCeEEEEEcCCC-CeEEEEEeCCCcEEEEEcCCCeeEEEe--------eCCeeEEEEecCCCEEEEE
Q 003840 585 NPGYSLRTFMGHSASVMSLDFHPNK-DDLICSCDGDGEIRYWSINNGSCTRVF--------KGGTAQMRFQPHLGRYLAA 655 (792)
Q Consensus 585 s~~~~i~~~~~h~~~V~sl~fspd~-~~ll~sgs~Dg~I~iwdl~~~~~~~~~--------~~~~~~v~~sp~~~~lla~ 655 (792)
.+...+.++.+|...|++|.|...| +.-+++|+.|..|.+--.........| +.....+++.|..++++++
T Consensus 535 rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~ 614 (1080)
T KOG1408|consen 535 RNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTV 614 (1080)
T ss_pred cccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEE
Confidence 8777889999999999999997765 344569999998876544322111111 2345678999999999999
Q ss_pred EcCCeEEEEECCCCeEEEEecC---CCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEE
Q 003840 656 AAENVVSILDAETQACRLSLQG---HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVF 731 (792)
Q Consensus 656 s~dg~I~i~D~~t~~~~~~l~~---h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~f 731 (792)
+.|..|+|||+.+++.++.|++ |++....+..+|.|.||++.+.| ++.+||+.++ +|+....+|...|+.+.|
T Consensus 615 cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sg---EcvA~m~GHsE~VTG~kF 691 (1080)
T KOG1408|consen 615 CQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSG---ECVAQMTGHSEAVTGVKF 691 (1080)
T ss_pred ecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccc---hhhhhhcCcchheeeeee
Confidence 9999999999999999999986 66778889999999999999988 9999999888 899999999999999999
Q ss_pred eCCCCEEEEEEcCCeEEEEECCCC
Q 003840 732 HPTYPSLLVIGCYQSLELWNMSEN 755 (792)
Q Consensus 732 spdg~~L~sgs~dg~I~IwDl~~~ 755 (792)
.+|.++|++.+.||.|.||.+...
T Consensus 692 ~nDCkHlISvsgDgCIFvW~lp~~ 715 (1080)
T KOG1408|consen 692 LNDCKHLISVSGDGCIFVWKLPLT 715 (1080)
T ss_pred cccchhheeecCCceEEEEECchh
Confidence 999999999999999999998753
No 107
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.92 E-value=1.2e-23 Score=222.06 Aligned_cols=248 Identities=19% Similarity=0.365 Sum_probs=204.1
Q ss_pred eeeecCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEECCCCc----------eeEEeccCCCCEEEEEECCCCC-eEEEEe
Q 003840 506 NSVRASTSKVICCHFSSD-GKLLATGGHDKKAVLWHTDTLK----------SKTNLEEHSSLITDVRFSPSMP-RLATSS 573 (792)
Q Consensus 506 ~~l~~H~~~V~~lafspd-g~~Lasgs~Dg~I~vWdl~t~~----------~~~~l~~h~~~V~~i~fspdg~-~Lasgs 573 (792)
...-.|.+.|+.+.+-|. -.++|+++..+.|+|||..+.. +..+|.+|...-+.++|++... .|++++
T Consensus 118 ~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~ 197 (422)
T KOG0264|consen 118 SQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGS 197 (422)
T ss_pred EEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeecc
Confidence 334579999999999994 4577888899999999986422 2237889999889999999544 899999
Q ss_pred CCCcEEEEeCCCCCc------eeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCCeeEEEEec
Q 003840 574 FDKTVRVWDADNPGY------SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQP 647 (792)
Q Consensus 574 ~Dg~V~IWdl~s~~~------~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp 647 (792)
.|+.|++||+..... ....+.+|...|..++|++....+|++++.|+.+.|||++++
T Consensus 198 ~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~----------------- 260 (422)
T KOG0264|consen 198 DDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSN----------------- 260 (422)
T ss_pred CCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCC-----------------
Confidence 999999999985433 356788999999999999999999999999999999998852
Q ss_pred CCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcC-CCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCc
Q 003840 648 HLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDP-SGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNK 725 (792)
Q Consensus 648 ~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~sp-dg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~ 725 (792)
+.++.....+|..+|+|++|+| ++.+||+|+.| +|++||+++.. .+++.+.+|...
T Consensus 261 --------------------~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~--~~lh~~e~H~de 318 (422)
T KOG0264|consen 261 --------------------TSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLN--KPLHTFEGHEDE 318 (422)
T ss_pred --------------------CCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcc--cCceeccCCCcc
Confidence 1123334566999999999999 55688889988 99999999764 588999999999
Q ss_pred eEEEEEeCCC-CEEEEEEcCCeEEEEECCCC--------------c-EEEEcccCCCeEEEEEeCCCC-EEEEEeCCCcE
Q 003840 726 FHSCVFHPTY-PSLLVIGCYQSLELWNMSEN--------------K-TMTLTAHEGLIAALAVSTETG-YVASASHDKFV 788 (792)
Q Consensus 726 i~si~fspdg-~~L~sgs~dg~I~IwDl~~~--------------~-~~~~~~h~~~V~sl~fspdg~-~LaSgs~DG~I 788 (792)
|..+.|+|+. ..|++++.|+.+.|||+..- + ++...+|...|..+.|+|+.. .|+++++|+.+
T Consensus 319 v~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~L 398 (422)
T KOG0264|consen 319 VFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNIL 398 (422)
T ss_pred eEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceE
Confidence 9999999976 56778889999999999641 1 135568999999999999876 57788999999
Q ss_pred EEeC
Q 003840 789 KLWK 792 (792)
Q Consensus 789 ~IWd 792 (792)
.||+
T Consensus 399 qIW~ 402 (422)
T KOG0264|consen 399 QIWQ 402 (422)
T ss_pred EEee
Confidence 9995
No 108
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=3.7e-24 Score=233.17 Aligned_cols=305 Identities=16% Similarity=0.231 Sum_probs=246.6
Q ss_pred CCCCCCCCcceeccCCcce---eeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC--ceeEEeccCCCCEE
Q 003840 484 TDPRDAGGRGMDVSQGFSF---KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL--KSKTNLEEHSSLIT 558 (792)
Q Consensus 484 ~~~~d~~~~~~d~~~~~~~---~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~--~~~~~l~~h~~~V~ 558 (792)
++++|+.++.|.+.....+ ....++..|.+.|..++...+|+.|++++.|-+|++|+...+ -++.++..|.+.|.
T Consensus 42 TgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVk 121 (735)
T KOG0308|consen 42 TGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVK 121 (735)
T ss_pred ecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccchhe
Confidence 3566777788877665443 347788999999999999999999999999999999999877 68889999999999
Q ss_pred EEEE-CCCCCeEEEEeCCCcEEEEeCCCCCc---------eeEEec-ccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEc
Q 003840 559 DVRF-SPSMPRLATSSFDKTVRVWDADNPGY---------SLRTFM-GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSI 627 (792)
Q Consensus 559 ~i~f-spdg~~Lasgs~Dg~V~IWdl~s~~~---------~i~~~~-~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl 627 (792)
|+++ .++..++|+|+.|+.|.|||+++... ....+. ++...|++++.++.+ .+|++|+..+.|++||.
T Consensus 122 cla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~-t~ivsGgtek~lr~wDp 200 (735)
T KOG0308|consen 122 CLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTG-TIIVSGGTEKDLRLWDP 200 (735)
T ss_pred eeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcc-eEEEecCcccceEEecc
Confidence 9999 78888999999999999999996422 122233 788999999999987 68889999999999999
Q ss_pred CCCeeEEEeeCC---eeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEE
Q 003840 628 NNGSCTRVFKGG---TAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVR 703 (792)
Q Consensus 628 ~~~~~~~~~~~~---~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~ 703 (792)
++++.+..+.++ +..+..+.+|..++++++||+|++||+...+++.++..|...|+++..+++-.++++|+.| .|+
T Consensus 201 rt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~ 280 (735)
T KOG0308|consen 201 RTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIY 280 (735)
T ss_pred ccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCCCcEE
Confidence 999888777654 5678899999999999999999999999999999999999999999999999999999999 999
Q ss_pred EEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEE-----------------------
Q 003840 704 VWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTL----------------------- 760 (792)
Q Consensus 704 IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~~~----------------------- 760 (792)
.=|+++...... +.....++..+..+.+..-+.+++.|+.|+-|...-...+..
T Consensus 281 ~Tdl~n~~~~tl---ick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~~~l~~s~~~~~~~T~~~~~~~~~~~tp~ 357 (735)
T KOG0308|consen 281 RTDLRNPAKSTL---ICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPDIALSVSGDLDFFSTDSNNHSCDLTNTPD 357 (735)
T ss_pred ecccCCchhheE---eecCCCchhhhhhccccCCceeeeccccceecCCccccccccCCCCCcccccCCCccccccCCCc
Confidence 999987532222 223456677777776666668888889999887643221100
Q ss_pred --cccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003840 761 --TAHEGLIAALAVSTETGYVASASHDKFVKLWK 792 (792)
Q Consensus 761 --~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd 792 (792)
......|...++-.|.++++|-..+|.+.+||
T Consensus 358 ~vi~Gg~ai~k~~mL~dkRhVlTkDa~gnv~lwD 391 (735)
T KOG0308|consen 358 SVIPGGAAIKKHAMLNDKRHVLTKDAKGNVALWD 391 (735)
T ss_pred eeccCchhhhhhhhhcCcceEeeecCCCCEEEEE
Confidence 00111233334456788999999999999997
No 109
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.92 E-value=3.5e-22 Score=223.09 Aligned_cols=357 Identities=16% Similarity=0.234 Sum_probs=254.4
Q ss_pred CcceEEEEeCCCeeeecCCCeeEeCCCcchhhcccccccCCCCCCceeeeccCCC---CCCCCCCCcceeccCC-cc-ee
Q 003840 429 SKPLMMFGTDGAGTLTSPSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD---TDPRDAGGRGMDVSQG-FS-FK 503 (792)
Q Consensus 429 ~k~~l~~s~Dg~~~~ss~s~~lWD~~tg~~~~~~~~~~~~g~~d~~v~~~l~~d~---~~~~d~~~~~~d~~~~-~~-~~ 503 (792)
.+.+.+...+..+++++..+.|+-++.|+.+.+...... +.+...+.-.+ ....+....+|+.... .. +.
T Consensus 76 p~~I~alas~~~~vy~A~g~~i~~~~rgk~i~~~~~~~~-----a~v~~l~~fGe~lia~d~~~~l~vw~~s~~~~e~~l 150 (910)
T KOG1539|consen 76 PDKITALASDKDYVYVASGNKIYAYARGKHIRHTTLLHG-----AKVHLLLPFGEHLIAVDISNILFVWKTSSIQEELYL 150 (910)
T ss_pred CCceEEEEecCceEEEecCcEEEEEEccceEEEEecccc-----ceEEEEeeecceEEEEEccCcEEEEEeccccccccc
Confidence 456778888999998888888877777755444332111 22222211111 1223455667776663 11 12
Q ss_pred eeeeeecCCCCeEEEEEcC--CCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEE
Q 003840 504 EANSVRASTSKVICCHFSS--DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVW 581 (792)
Q Consensus 504 ~~~~l~~H~~~V~~lafsp--dg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IW 581 (792)
....++...+.|+++. +| .=+.|+.|+.+|.+.||++.+++.+.++.++...|+++.=+|--..++.|..+|+|.|+
T Consensus 151 ~~~~~~~~~~~Ital~-HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~Viif 229 (910)
T KOG1539|consen 151 QSTFLKVEGDFITALL-HPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIF 229 (910)
T ss_pred cceeeeccCCceeeEe-cchhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEE
Confidence 2223333333377764 44 33678999999999999999999999999999999999999988899999999999999
Q ss_pred eCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee----CCeeEEEEecCCCEEEEEEc
Q 003840 582 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK----GGTAQMRFQPHLGRYLAAAA 657 (792)
Q Consensus 582 dl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~----~~~~~v~~sp~~~~lla~s~ 657 (792)
++.. ++.+.+|+...+.|++++|..||..++++++..|.+.+||++..+.+.... +.+....|.+....+++++.
T Consensus 230 NlK~-dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~ 308 (910)
T KOG1539|consen 230 NLKF-DKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGA 308 (910)
T ss_pred Eccc-CcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccC
Confidence 9998 778888885569999999999999999999999999999999887665443 23344444444444444444
Q ss_pred CCeEEEE--E----------------------------------------------------------------------
Q 003840 658 ENVVSIL--D---------------------------------------------------------------------- 665 (792)
Q Consensus 658 dg~I~i~--D---------------------------------------------------------------------- 665 (792)
|+.+++| |
T Consensus 309 DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~ 388 (910)
T KOG1539|consen 309 DNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVF 388 (910)
T ss_pred CCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhccccccccccccccc
Confidence 4433333 2
Q ss_pred ----------------------------------------CCCCeE-EEEec-----CCCCCeEEEEEcCCCCEEEEEeC
Q 003840 666 ----------------------------------------AETQAC-RLSLQ-----GHTKPIDSVCWDPSGELLASVSE 699 (792)
Q Consensus 666 ----------------------------------------~~t~~~-~~~l~-----~h~~~V~sv~~spdg~~Las~s~ 699 (792)
.++... .+.+. .....+++++.++.|++.+.|+.
T Consensus 389 ~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S 468 (910)
T KOG1539|consen 389 STEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYS 468 (910)
T ss_pred chhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEecc
Confidence 111111 00010 01135777888888888888776
Q ss_pred C-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcE---------------------
Q 003840 700 D-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKT--------------------- 757 (792)
Q Consensus 700 d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~--------------------- 757 (792)
. .|-+|++.+|-.......-..|...|+.++...-++.+++++.+|-+.+||+.+...
T Consensus 469 ~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l 548 (910)
T KOG1539|consen 469 KGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDL 548 (910)
T ss_pred CCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhh
Confidence 6 888998887733222222357889999999999999999999999999999976431
Q ss_pred --------------------E-EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003840 758 --------------------M-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 792 (792)
Q Consensus 758 --------------------~-~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd 792 (792)
+ .+.+|.+.|++++|||||++|++++.|++|++||
T Consensus 549 ~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wD 604 (910)
T KOG1539|consen 549 LAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWD 604 (910)
T ss_pred hhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEe
Confidence 0 2346899999999999999999999999999998
No 110
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=1.1e-23 Score=205.98 Aligned_cols=246 Identities=22% Similarity=0.302 Sum_probs=202.0
Q ss_pred ecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC---ceeEEeccCCCCEEEEEECC--CCCeEEEEeCCCcEEEEeC
Q 003840 509 RASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL---KSKTNLEEHSSLITDVRFSP--SMPRLATSSFDKTVRVWDA 583 (792)
Q Consensus 509 ~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~---~~~~~l~~h~~~V~~i~fsp--dg~~Lasgs~Dg~V~IWdl 583 (792)
..|.+.|..+..+-.|++|||++.|++|+||.+.+. ..+.+|.+|.++|+.++|.. -|.+||++++||.|.||.-
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke 87 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKE 87 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEec
Confidence 478999999999999999999999999999999754 56888999999999999976 7899999999999999999
Q ss_pred CCCC-ceeEEecccCCCeEEEEEcCCCC-eEEEEEeCCCcEEEEEcCCC------eeEEEeeCCeeEEEEecC---C---
Q 003840 584 DNPG-YSLRTFMGHSASVMSLDFHPNKD-DLICSCDGDGEIRYWSINNG------SCTRVFKGGTAQMRFQPH---L--- 649 (792)
Q Consensus 584 ~s~~-~~i~~~~~h~~~V~sl~fspd~~-~ll~sgs~Dg~I~iwdl~~~------~~~~~~~~~~~~v~~sp~---~--- 649 (792)
+++. .....+..|...|++|+|.|.+- .+|++++.||.|.|++++.. +....+..++++++|.|. +
T Consensus 88 ~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~ 167 (299)
T KOG1332|consen 88 ENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLV 167 (299)
T ss_pred CCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCcccc
Confidence 8743 23445668999999999998753 45678889999999998765 122234557788888876 3
Q ss_pred --------CEEEEEEcCCeEEEEECCCC--eEEEEecCCCCCeEEEEEcCCC----CEEEEEeCC-eEEEEECCCCCCcc
Q 003840 650 --------GRYLAAAAENVVSILDAETQ--ACRLSLQGHTKPIDSVCWDPSG----ELLASVSED-SVRVWTVGSGSEGE 714 (792)
Q Consensus 650 --------~~lla~s~dg~I~i~D~~t~--~~~~~l~~h~~~V~sv~~spdg----~~Las~s~d-~I~IwDl~s~~~~~ 714 (792)
.+|++++.|+.|+||+..++ +...++.+|.+.|+.++|.|.- .+|++|+.| +|.||..+...+.-
T Consensus 168 ~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~w 247 (299)
T KOG1332|consen 168 DQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPW 247 (299)
T ss_pred ccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcc
Confidence 56999999999999999886 3445588999999999999954 489999999 99999987432323
Q ss_pred eEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 003840 715 CVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSE 754 (792)
Q Consensus 715 ~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~ 754 (792)
....+......+..+.|+..|+.|++++.|+.|.+|.-..
T Consensus 248 k~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 248 KKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENV 287 (299)
T ss_pred cccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCC
Confidence 3333444566799999999999999999999999997543
No 111
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.91 E-value=3.6e-22 Score=211.99 Aligned_cols=333 Identities=19% Similarity=0.256 Sum_probs=250.2
Q ss_pred eeEeCCCcchhhcccccccCCCCCCceee-eccCCCCCC---CCCCCcceeccCCcceeeeeeeecCC-CCeEEEEEcCC
Q 003840 449 QLWDDKDLELRADMDRLVEDGSLDDNVES-FLSHDDTDP---RDAGGRGMDVSQGFSFKEANSVRAST-SKVICCHFSSD 523 (792)
Q Consensus 449 ~lWD~~tg~~~~~~~~~~~~g~~d~~v~~-~l~~d~~~~---~d~~~~~~d~~~~~~~~~~~~l~~H~-~~V~~lafspd 523 (792)
.+||+..+....++... .+....+ |...+.... ..+..-.|+...+.-++....++.+. ..|.|++|.++
T Consensus 183 SVWdWqk~~~~~~vk~s-----ne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~en 257 (626)
T KOG2106|consen 183 SVWDWQKKAKLGPVKTS-----NEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLEN 257 (626)
T ss_pred chhhchhhhccCcceec-----cceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCC
Confidence 67999887765544421 1111222 222222221 12233467777777677777776553 67999999999
Q ss_pred CCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCc----------e----
Q 003840 524 GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGY----------S---- 589 (792)
Q Consensus 524 g~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~----------~---- 589 (792)
|. +++|..+|.|.||+..+.+..+....|.+.|.+++...+|.+| +|+.|..|..||-+-... .
T Consensus 258 gd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gtll-SGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv 335 (626)
T KOG2106|consen 258 GD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLL-SGGKDRKIILWDDNYRKLRETELPEQFGPIRTV 335 (626)
T ss_pred CC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEe-ecCccceEEeccccccccccccCchhcCCeeEE
Confidence 95 6799999999999998888888777999999999999999554 599999999998431000 0
Q ss_pred -------------------------eEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCCeeEEE
Q 003840 590 -------------------------LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMR 644 (792)
Q Consensus 590 -------------------------i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~ 644 (792)
.....+|....+.++.+|+.+ .+++|+.|+.+++|+-......+.+..+..++.
T Consensus 336 ~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~-q~~T~gqdk~v~lW~~~k~~wt~~~~d~~~~~~ 414 (626)
T KOG2106|consen 336 AEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKN-QLLTCGQDKHVRLWNDHKLEWTKIIEDPAECAD 414 (626)
T ss_pred ecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChh-heeeccCcceEEEccCCceeEEEEecCceeEee
Confidence 012236788889999999965 556999999999999444445567788899999
Q ss_pred EecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCC
Q 003840 645 FQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNG 723 (792)
Q Consensus 645 ~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~ 723 (792)
|+|.+ .+++|+..|...++|.++...+..-.. ..++++++|+|+|.+||.++.| .|+||.+..... +..+.-.++.
T Consensus 415 fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~-~y~r~~k~~g 491 (626)
T KOG2106|consen 415 FHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGR-KYSRVGKCSG 491 (626)
T ss_pred ccCcc-eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCc-EEEEeeeecC
Confidence 99998 999999999999999999666655554 8899999999999999999999 999999975432 3333344555
Q ss_pred CceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-------------------EEcccCCCeEEEEEeCCCCEEEEEeC
Q 003840 724 NKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-------------------TLTAHEGLIAALAVSTETGYVASASH 784 (792)
Q Consensus 724 ~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~-------------------~~~~h~~~V~sl~fspdg~~LaSgs~ 784 (792)
.+|+.+.|++|+.+|.+-+.|-.|..|....-+.+ ....+...|..++-+.+.+++|+|.+
T Consensus 492 s~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd 571 (626)
T KOG2106|consen 492 SPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDD 571 (626)
T ss_pred ceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhcccc
Confidence 89999999999999999999999999954332111 11235556777777888899999999
Q ss_pred CCcEEEeC
Q 003840 785 DKFVKLWK 792 (792)
Q Consensus 785 DG~I~IWd 792 (792)
.|+|++|.
T Consensus 572 ~g~v~lf~ 579 (626)
T KOG2106|consen 572 FGKVHLFS 579 (626)
T ss_pred CceEEEEc
Confidence 99999984
No 112
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=5.6e-23 Score=216.45 Aligned_cols=282 Identities=18% Similarity=0.266 Sum_probs=232.7
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECC--CCceeEEeccCCCCEEEEEECCCCC-eEEEEeCCCcEEEEeCCCC
Q 003840 510 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTD--TLKSKTNLEEHSSLITDVRFSPSMP-RLATSSFDKTVRVWDADNP 586 (792)
Q Consensus 510 ~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~--t~~~~~~l~~h~~~V~~i~fspdg~-~Lasgs~Dg~V~IWdl~s~ 586 (792)
...+.|+|+.|+|...+|++++.|+.++||-++ +...+..+.-...+|.+.+|.|+|. .+++++....+++||+.+.
T Consensus 211 ps~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~a 290 (514)
T KOG2055|consen 211 PSHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETA 290 (514)
T ss_pred cCcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccc
Confidence 456889999999999999999999999999886 3445666777788999999999999 8999999999999999873
Q ss_pred Cc-eeEEecccC-CCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee--CCeeEEEEecCCCEEEEEEcCCeEE
Q 003840 587 GY-SLRTFMGHS-ASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK--GGTAQMRFQPHLGRYLAAAAENVVS 662 (792)
Q Consensus 587 ~~-~i~~~~~h~-~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~--~~~~~v~~sp~~~~lla~s~dg~I~ 662 (792)
.. .+....++. ..+..+.++++++ +|+..+..|.|.+....+++.+..++ +.+..++|+.++..|++++.+|.|+
T Consensus 291 k~~k~~~~~g~e~~~~e~FeVShd~~-fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~ 369 (514)
T KOG2055|consen 291 KVTKLKPPYGVEEKSMERFEVSHDSN-FIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVY 369 (514)
T ss_pred ccccccCCCCcccchhheeEecCCCC-eEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEE
Confidence 21 122222333 4577788899987 56688899999999999999887764 6788899999999999999999999
Q ss_pred EEECCCCeEEEEecCCC-CCeEEEEEcCCCCEEEEEeCC-eEEEEECCCC---CCcceEEEeecCCCceEEEEEeCCCCE
Q 003840 663 ILDAETQACRLSLQGHT-KPIDSVCWDPSGELLASVSED-SVRVWTVGSG---SEGECVHELSCNGNKFHSCVFHPTYPS 737 (792)
Q Consensus 663 i~D~~t~~~~~~l~~h~-~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~---~~~~~i~~~~~~~~~i~si~fspdg~~ 737 (792)
+||++...+++.+.... -.-+++|.+.++.|||+|++. .|.|||..+. ..++++..+..-...|+++.|++|...
T Consensus 370 v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qi 449 (514)
T KOG2055|consen 370 VWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQI 449 (514)
T ss_pred EEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhh
Confidence 99999999998887432 234678888999999999988 9999997543 345677777777788999999999999
Q ss_pred EEEEEcC--CeEEEEECCCCcEE-EEc---ccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003840 738 LLVIGCY--QSLELWNMSENKTM-TLT---AHEGLIAALAVSTETGYVASASHDKFVKLWK 792 (792)
Q Consensus 738 L~sgs~d--g~I~IwDl~~~~~~-~~~---~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd 792 (792)
|+.++.. ..+++..+.+.... .+. ..-+.|+||+|+|.+.+||.|.++|.|.+|+
T Consensus 450 LAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~k 510 (514)
T KOG2055|consen 450 LAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFK 510 (514)
T ss_pred hhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEe
Confidence 8888764 58999988877766 222 2345799999999999999999999999996
No 113
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=3.9e-23 Score=223.09 Aligned_cols=288 Identities=20% Similarity=0.243 Sum_probs=230.7
Q ss_pred CcceeeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCC--eEEEEeCCC
Q 003840 499 GFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP--RLATSSFDK 576 (792)
Q Consensus 499 ~~~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~--~Lasgs~Dg 576 (792)
.|+..+...++||++.|.||...|.|.+||+|+.||+|+||.+.+|++++++.- .+.|.||+|+|.+. .||++-.+.
T Consensus 387 PFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~-d~~I~~vaw~P~~~~~vLAvA~~~~ 465 (733)
T KOG0650|consen 387 PFPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQF-DSEIRSVAWNPLSDLCVLAVAVGEC 465 (733)
T ss_pred CCcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEee-cceeEEEEecCCCCceeEEEEecCc
Confidence 456667778999999999999999999999999999999999999999998874 45899999999765 344443322
Q ss_pred cEEEEeC---------------------------------CC---CCceeEEecccCCCeEEEEEcCCCCeEEEEEeC--
Q 003840 577 TVRVWDA---------------------------------DN---PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDG-- 618 (792)
Q Consensus 577 ~V~IWdl---------------------------------~s---~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~-- 618 (792)
+.|-+. .. ...-++....|...|..|.||..|+++..++..
T Consensus 466 -~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~ 544 (733)
T KOG0650|consen 466 -VLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSG 544 (733)
T ss_pred -eEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCC
Confidence 333332 11 011134445688999999999999877655543
Q ss_pred CCcEEEEEcCCCeeEEEe---eCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEE
Q 003840 619 DGEIRYWSINNGSCTRVF---KGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLA 695 (792)
Q Consensus 619 Dg~I~iwdl~~~~~~~~~---~~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~La 695 (792)
...|.|+++...+...-| ++.+.++.|+|...++++++ ...|+|||+...+.+..+.....+|..++++|.|..|+
T Consensus 545 ~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli 623 (733)
T KOG0650|consen 545 NKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLI 623 (733)
T ss_pred cceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEe-ccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEE
Confidence 356889999877655444 56788899999988877765 47899999999888888887888999999999999999
Q ss_pred EEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC------CCC-cEE---EEcccC
Q 003840 696 SVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNM------SEN-KTM---TLTAHE 764 (792)
Q Consensus 696 s~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl------~~~-~~~---~~~~h~ 764 (792)
.++.| .++.||+.-.. +....+..|...+++++|++....+++|+.||++.||.- -.+ .++ .+.+|.
T Consensus 624 ~gs~d~k~~WfDldlss--kPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~ 701 (733)
T KOG0650|consen 624 LGSYDKKMCWFDLDLSS--KPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHE 701 (733)
T ss_pred EecCCCeeEEEEcccCc--chhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCce
Confidence 99999 99999997543 567778889999999999999999999999999988842 222 222 566776
Q ss_pred CC----eEEEEEeCCCCEEEEEeCCCcEEEe
Q 003840 765 GL----IAALAVSTETGYVASASHDKFVKLW 791 (792)
Q Consensus 765 ~~----V~sl~fspdg~~LaSgs~DG~I~IW 791 (792)
.. |..+.|+|.--+|++++.||+|++|
T Consensus 702 ~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 702 KTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred eecccceEeecccCCCceEEecCCCceEEee
Confidence 65 8999999999999999999999999
No 114
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=1.1e-22 Score=204.70 Aligned_cols=255 Identities=20% Similarity=0.323 Sum_probs=198.7
Q ss_pred ecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECC----CCceeEEeccCCCCEEEEEECC--CCCeEEEEeCCCcEEEEe
Q 003840 509 RASTSKVICCHFSSDGKLLATGGHDKKAVLWHTD----TLKSKTNLEEHSSLITDVRFSP--SMPRLATSSFDKTVRVWD 582 (792)
Q Consensus 509 ~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~----t~~~~~~l~~h~~~V~~i~fsp--dg~~Lasgs~Dg~V~IWd 582 (792)
.+|.+-|.|+.|+..|+.+|+|+.|.+|+|||.+ +..+....+.|.+.|..|.|.+ -|..+|++++|++|.||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 4788999999999999999999999999999964 3466777889999999999976 588999999999999997
Q ss_pred CCCC--------CceeEEecccCCCeEEEEEcCCC-CeEEEEEeCCCcEEEEEcCCCeeEEEeeCCeeEEEEecCCCEEE
Q 003840 583 ADNP--------GYSLRTFMGHSASVMSLDFHPNK-DDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYL 653 (792)
Q Consensus 583 l~s~--------~~~i~~~~~h~~~V~sl~fspd~-~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~ll 653 (792)
-... -....++......|++|+|.|.. ...+++++.||.||||+.-.-..+..
T Consensus 90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~------------------ 151 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQ------------------ 151 (361)
T ss_pred ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCcccccc------------------
Confidence 6321 12345666788899999999863 23577899999999998754322221
Q ss_pred EEEcCCeEEEEECCCC--eEEEEecCCCCCeEEEEEcCC---CCEEEEEeCC------eEEEEECCCCC-CcceEEEeec
Q 003840 654 AAAAENVVSILDAETQ--ACRLSLQGHTKPIDSVCWDPS---GELLASVSED------SVRVWTVGSGS-EGECVHELSC 721 (792)
Q Consensus 654 a~s~dg~I~i~D~~t~--~~~~~l~~h~~~V~sv~~spd---g~~Las~s~d------~I~IwDl~s~~-~~~~i~~~~~ 721 (792)
|.+... ..+.....+..+..||.|++. ..+|+.|+++ .++||...... +...+.++.+
T Consensus 152 ----------W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d 221 (361)
T KOG2445|consen 152 ----------WTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPD 221 (361)
T ss_pred ----------chhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCC
Confidence 111100 000111235566789999974 3488888877 79999887654 5677788889
Q ss_pred CCCceEEEEEeCC----CCEEEEEEcCCeEEEEECCCCc--------------------EE-EEcccCCCeEEEEEeCCC
Q 003840 722 NGNKFHSCVFHPT----YPSLLVIGCYQSLELWNMSENK--------------------TM-TLTAHEGLIAALAVSTET 776 (792)
Q Consensus 722 ~~~~i~si~fspd----g~~L~sgs~dg~I~IwDl~~~~--------------------~~-~~~~h~~~V~sl~fspdg 776 (792)
+..+|+.++|.|+ ...|++++.|| |+||.++... .+ .+.+|.+.|+.+.|+-.|
T Consensus 222 ~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtG 300 (361)
T KOG2445|consen 222 HTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTG 300 (361)
T ss_pred CCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeee
Confidence 9999999999995 45789999999 9999987411 12 466899999999999999
Q ss_pred CEEEEEeCCCcEEEeC
Q 003840 777 GYVASASHDKFVKLWK 792 (792)
Q Consensus 777 ~~LaSgs~DG~I~IWd 792 (792)
.+|++.|+||+||+|+
T Consensus 301 tiLsStGdDG~VRLWk 316 (361)
T KOG2445|consen 301 TILSSTGDDGCVRLWK 316 (361)
T ss_pred eEEeecCCCceeeehh
Confidence 9999999999999996
No 115
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.91 E-value=1.4e-22 Score=211.87 Aligned_cols=251 Identities=19% Similarity=0.241 Sum_probs=217.4
Q ss_pred CcceeeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcE
Q 003840 499 GFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTV 578 (792)
Q Consensus 499 ~~~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V 578 (792)
+.+-..+..++||...|+.+.|+++...+++++.|..|+||..........+..|..+|+.+..+|.|.||++++.||+.
T Consensus 248 ~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w 327 (506)
T KOG0289|consen 248 KPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTW 327 (506)
T ss_pred cchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceE
Confidence 34445678899999999999999999999999999999999999888888899999999999999999999999999999
Q ss_pred EEEeCCCCCceeEEecc--cCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee---CCeeEEEEecCCCEEE
Q 003840 579 RVWDADNPGYSLRTFMG--HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLGRYL 653 (792)
Q Consensus 579 ~IWdl~s~~~~i~~~~~--h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~---~~~~~v~~sp~~~~ll 653 (792)
.+.|+++ +..+..... ..-.+++++||||| .+|.+|..||.|+|||+.+...+..|. +++..+.|+.+|-+++
T Consensus 328 ~Fsd~~~-g~~lt~vs~~~s~v~~ts~~fHpDg-Lifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~La 405 (506)
T KOG0289|consen 328 AFSDISS-GSQLTVVSDETSDVEYTSAAFHPDG-LIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLA 405 (506)
T ss_pred EEEEccC-CcEEEEEeeccccceeEEeeEcCCc-eEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEE
Confidence 9999998 444444332 23458999999997 588899999999999999998887775 4678899999999999
Q ss_pred EEEcCCeEEEEECCCCeEEEEecC-CCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEE
Q 003840 654 AAAAENVVSILDAETQACRLSLQG-HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVF 731 (792)
Q Consensus 654 a~s~dg~I~i~D~~t~~~~~~l~~-h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~f 731 (792)
+++.|+.|++||++..+...++.. ...+|.+++|+..|.+|+.++.+ .|++++-.+ +.+.++..+..|.+..+.+.|
T Consensus 406 t~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~-k~W~~~~~~~~~sg~st~v~F 484 (506)
T KOG0289|consen 406 TAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKT-KSWTEIKELADHSGLSTGVRF 484 (506)
T ss_pred EEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEeccc-ccceeeehhhhcccccceeee
Confidence 999999999999999887766654 23479999999999999999888 888887554 456788888888888999999
Q ss_pred eCCCCEEEEEEcCCeEEEEEC
Q 003840 732 HPTYPSLLVIGCYQSLELWNM 752 (792)
Q Consensus 732 spdg~~L~sgs~dg~I~IwDl 752 (792)
.....++++++.|..++++.+
T Consensus 485 g~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 485 GEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred cccceEEeeccchhheEEeec
Confidence 999999999999999888864
No 116
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=5.3e-23 Score=217.31 Aligned_cols=257 Identities=19% Similarity=0.213 Sum_probs=209.6
Q ss_pred CCcceeccCCcceeeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeE
Q 003840 490 GGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRL 569 (792)
Q Consensus 490 ~~~~~d~~~~~~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~L 569 (792)
...+|.+.+...+. ...--.++|.|++-+|+|.+|+.|+..|.|++|.+.+|+.+..+..|-..|+|+.|+.|+.+|
T Consensus 62 ~l~vw~i~k~~~~~---q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~i 138 (476)
T KOG0646|consen 62 LLHVWEILKKDQVV---QYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHI 138 (476)
T ss_pred cccccccCchhhhh---hhcccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEE
Confidence 45566666554333 222336789999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCcEEEEeCCC--------CCceeEEecccCCCeEEEEEcCCC-CeEEEEEeCCCcEEEEEcCCCeeEEEe--eC
Q 003840 570 ATSSFDKTVRVWDADN--------PGYSLRTFMGHSASVMSLDFHPNK-DDLICSCDGDGEIRYWSINNGSCTRVF--KG 638 (792)
Q Consensus 570 asgs~Dg~V~IWdl~s--------~~~~i~~~~~h~~~V~sl~fspd~-~~ll~sgs~Dg~I~iwdl~~~~~~~~~--~~ 638 (792)
++|+.||.|.+|++.. ..+++..|..|.-+|+++...+.+ +-.+++++.|.+|++||+..+.++..+ ..
T Consensus 139 iTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~ 218 (476)
T KOG0646|consen 139 ITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPS 218 (476)
T ss_pred EecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCC
Confidence 9999999999998742 235778899999999999987652 345779999999999999999988764 56
Q ss_pred CeeEEEEecCCCEEEEEEcCCeEEEEECCCC----------------eEEEEecCCCC--CeEEEEEcCCCCEEEEEeCC
Q 003840 639 GTAQMRFQPHLGRYLAAAAENVVSILDAETQ----------------ACRLSLQGHTK--PIDSVCWDPSGELLASVSED 700 (792)
Q Consensus 639 ~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~----------------~~~~~l~~h~~--~V~sv~~spdg~~Las~s~d 700 (792)
.+.+++++|.+..+++|+.+|.|.+.++... ..+..+.+|.. .|+|++++-||.+|++|+.|
T Consensus 219 si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~d 298 (476)
T KOG0646|consen 219 SIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDED 298 (476)
T ss_pred cceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCC
Confidence 7788999999999999999999999887543 23455678887 99999999999999999999
Q ss_pred -eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcC-CeEEEEEC
Q 003840 701 -SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY-QSLELWNM 752 (792)
Q Consensus 701 -~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~d-g~I~IwDl 752 (792)
.|+|||+.+. .+++++....++|+.+.+.|-.+.++.+... ..+-+|++
T Consensus 299 g~VcvWdi~S~---Q~iRtl~~~kgpVtnL~i~~~~~~~~l~~~~~ps~~~~~l 349 (476)
T KOG0646|consen 299 GKVCVWDIYSK---QCIRTLQTSKGPVTNLQINPLERGIILFEHKQPSLPNPHL 349 (476)
T ss_pred CCEEEEecchH---HHHHHHhhhccccceeEeeccccceecccccCccCCchHh
Confidence 9999999776 7777777677889888887765544443222 23444443
No 117
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.91 E-value=2.8e-21 Score=206.76 Aligned_cols=275 Identities=13% Similarity=0.088 Sum_probs=201.6
Q ss_pred CCCCcceeccCCcceeeeeeeecCCCCeEEEEEcCCCCEE-EEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCC
Q 003840 488 DAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLL-ATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSM 566 (792)
Q Consensus 488 d~~~~~~d~~~~~~~~~~~~l~~H~~~V~~lafspdg~~L-asgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg 566 (792)
+.....|+...+ +.+..+..+. .+.+++|+++|+++ ++++.++.|++||+.+++.+..+..+.. +..++|+|++
T Consensus 10 d~~v~~~d~~t~---~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~g 84 (300)
T TIGR03866 10 DNTISVIDTATL---EVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFALHPNG 84 (300)
T ss_pred CCEEEEEECCCC---ceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEEECCCC
Confidence 445566666544 3445555554 47789999999976 5667889999999999988877765543 5788999999
Q ss_pred CeEEEE-eCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCC-CcEEEEEcCCCeeEEEee--CCeeE
Q 003840 567 PRLATS-SFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD-GEIRYWSINNGSCTRVFK--GGTAQ 642 (792)
Q Consensus 567 ~~Lasg-s~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~D-g~I~iwdl~~~~~~~~~~--~~~~~ 642 (792)
+.|+++ +.|+.|++||+.+ ...+..+. +...+.+++|+|++..++ ++..+ ..+.+||.++++.+..+. .....
T Consensus 85 ~~l~~~~~~~~~l~~~d~~~-~~~~~~~~-~~~~~~~~~~~~dg~~l~-~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 161 (300)
T TIGR03866 85 KILYIANEDDNLVTVIDIET-RKVLAEIP-VGVEPEGMAVSPDGKIVV-NTSETTNMAHFIDTKTYEIVDNVLVDQRPRF 161 (300)
T ss_pred CEEEEEcCCCCeEEEEECCC-CeEEeEee-CCCCcceEEECCCCCEEE-EEecCCCeEEEEeCCCCeEEEEEEcCCCccE
Confidence 977655 5689999999987 44555554 234578899999987655 44444 467788999887765432 34567
Q ss_pred EEEecCCCEEEEEE-cCCeEEEEECCCCeEEEEecCCC-----C--CeEEEEEcCCCCEEEEE-eCC-eEEEEECCCCCC
Q 003840 643 MRFQPHLGRYLAAA-AENVVSILDAETQACRLSLQGHT-----K--PIDSVCWDPSGELLASV-SED-SVRVWTVGSGSE 712 (792)
Q Consensus 643 v~~sp~~~~lla~s-~dg~I~i~D~~t~~~~~~l~~h~-----~--~V~sv~~spdg~~Las~-s~d-~I~IwDl~s~~~ 712 (792)
+.|++++..+++++ .++.|++||+++++.+..+..+. . ....++|+|++++++++ +.+ .|.+||++++
T Consensus 162 ~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~-- 239 (300)
T TIGR03866 162 AEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTY-- 239 (300)
T ss_pred EEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCC--
Confidence 89999999887665 48999999999998776654221 1 23468899999986554 334 8999999765
Q ss_pred cceEEEeecCCCceEEEEEeCCCCEEEEEE-cCCeEEEEECCCCcEEEEcccCCCeEEEEEeC
Q 003840 713 GECVHELSCNGNKFHSCVFHPTYPSLLVIG-CYQSLELWNMSENKTMTLTAHEGLIAALAVST 774 (792)
Q Consensus 713 ~~~i~~~~~~~~~i~si~fspdg~~L~sgs-~dg~I~IwDl~~~~~~~~~~h~~~V~sl~fsp 774 (792)
+.+..+. +...+.+++|+|++.+|++++ .++.|++||+.+++++.........+.++|+|
T Consensus 240 -~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~ 300 (300)
T TIGR03866 240 -EVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVGRLPWGVVVRP 300 (300)
T ss_pred -cEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcccccceeEeCC
Confidence 3333332 345788999999999998874 58999999999999874444556678888865
No 118
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.91 E-value=1e-21 Score=208.54 Aligned_cols=335 Identities=18% Similarity=0.278 Sum_probs=247.1
Q ss_pred eeEeCCCcchhhcccccccCCCCCCceeeeccCCCCCCCCCCCcceeccCCcceeeeeeeecCCCCeEEEEEcCCCCEEE
Q 003840 449 QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLA 528 (792)
Q Consensus 449 ~lWD~~tg~~~~~~~~~~~~g~~d~~v~~~l~~d~~~~~d~~~~~~d~~~~~~~~~~~~l~~H~~~V~~lafspdg~~La 528 (792)
.+|+++.+.+.+....+......-.....|+..++....|..+.+.-+.++ ..+..+....|.+.|.|++.-.+|.+|-
T Consensus 225 ~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~-~~~~~k~~~aH~ggv~~L~~lr~GtllS 303 (626)
T KOG2106|consen 225 YFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDVITGDSGGNILIWSKG-TNRISKQVHAHDGGVFSLCMLRDGTLLS 303 (626)
T ss_pred EEEEccCCceEEEeeccccccceEEEEEEEcCCCCEEeecCCceEEEEeCC-CceEEeEeeecCCceEEEEEecCccEee
Confidence 569999998877777665544322223345666666566655544333333 3344445559999999999999997665
Q ss_pred EEeCCCeEEEEECCCCcee------------E-----------------------------EeccCCCCEEEEEECCCCC
Q 003840 529 TGGHDKKAVLWHTDTLKSK------------T-----------------------------NLEEHSSLITDVRFSPSMP 567 (792)
Q Consensus 529 sgs~Dg~I~vWdl~t~~~~------------~-----------------------------~l~~h~~~V~~i~fspdg~ 567 (792)
|+.|.+|..||-. .+.+ + ...+|.+..+.++.+|+..
T Consensus 304 -GgKDRki~~Wd~~-y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~ 381 (626)
T KOG2106|consen 304 -GGKDRKIILWDDN-YRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKN 381 (626)
T ss_pred -cCccceEEecccc-ccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChh
Confidence 9999999999832 1110 0 1124788889999999999
Q ss_pred eEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEe--eCCeeEEEE
Q 003840 568 RLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF--KGGTAQMRF 645 (792)
Q Consensus 568 ~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~--~~~~~~v~~ 645 (792)
.|+|++.|+.|++|+ + .+.+.+. ....++.|++|+|.| .++.|...|...+.|+++...+... ...+++++|
T Consensus 382 q~~T~gqdk~v~lW~-~--~k~~wt~-~~~d~~~~~~fhpsg--~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~y 455 (626)
T KOG2106|consen 382 QLLTCGQDKHVRLWN-D--HKLEWTK-IIEDPAECADFHPSG--VVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRY 455 (626)
T ss_pred heeeccCcceEEEcc-C--CceeEEE-EecCceeEeeccCcc--eEEEeeccceEEEEecccceeEEEEecCCceEEEEE
Confidence 999999999999999 3 2332222 245778999999998 6779999999999999997766554 356788999
Q ss_pred ecCCCEEEEEEcCCeEEEEECCCCeE--EEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEe---
Q 003840 646 QPHLGRYLAAAAENVVSILDAETQAC--RLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHEL--- 719 (792)
Q Consensus 646 sp~~~~lla~s~dg~I~i~D~~t~~~--~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~--- 719 (792)
+|++..+++++.|+.|+||-+..... ...-+.+..+|+.+.|++|+.+|.+.+.| .|..|..........++.+
T Consensus 456 sp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~ 535 (626)
T KOG2106|consen 456 SPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWA 535 (626)
T ss_pred cCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeee
Confidence 99999999999999999998865432 22223355899999999999999999999 9999954332221111111
Q ss_pred ------------ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcE----EEEcccCCCeEEEEEeCCCCEEEEEe
Q 003840 720 ------------SCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKT----MTLTAHEGLIAALAVSTETGYVASAS 783 (792)
Q Consensus 720 ------------~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~----~~~~~h~~~V~sl~fspdg~~LaSgs 783 (792)
..+...+..++-+.+.+.+++|...|+|++|...-... ..+.+|.+.|++++|..+..+|++.+
T Consensus 536 t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~tg 615 (626)
T KOG2106|consen 536 TYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLISTG 615 (626)
T ss_pred eeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeCCceEEecC
Confidence 11233455666677888899999999999998765433 36779999999999998888888888
Q ss_pred CCCcEEEeC
Q 003840 784 HDKFVKLWK 792 (792)
Q Consensus 784 ~DG~I~IWd 792 (792)
.|..|..|+
T Consensus 616 ~D~Si~qW~ 624 (626)
T KOG2106|consen 616 KDTSIMQWR 624 (626)
T ss_pred CCceEEEEE
Confidence 999999996
No 119
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.91 E-value=1.1e-22 Score=223.49 Aligned_cols=253 Identities=20% Similarity=0.351 Sum_probs=217.7
Q ss_pred CCCCCCCcceeccCCcceeeeeeeecCCCCeEE-EEEcC-CCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEE
Q 003840 485 DPRDAGGRGMDVSQGFSFKEANSVRASTSKVIC-CHFSS-DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRF 562 (792)
Q Consensus 485 ~~~d~~~~~~d~~~~~~~~~~~~l~~H~~~V~~-lafsp-dg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~f 562 (792)
.++|++.++|+-.. ..+.+...+.+|.+-|.+ ++|.+ ++-.|++|+.|++|.+|......+..++.+|...|+|+..
T Consensus 31 ~sRd~t~~vw~~~~-~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~ 109 (745)
T KOG0301|consen 31 GSRDGTVKVWAKKG-KQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSI 109 (745)
T ss_pred cCCCCceeeeeccC-cccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeec
Confidence 45566777776533 345566778899999988 88886 5557999999999999999999999999999999999998
Q ss_pred CCCCCeEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCCeeE
Q 003840 563 SPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQ 642 (792)
Q Consensus 563 spdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~ 642 (792)
..++. |++||.|.+++||.+. .+...+.+|...|+++++.|++ .++||+.|.+|++|.- ++++++|.++..+
T Consensus 110 ~~~~~-~iSgSWD~TakvW~~~---~l~~~l~gH~asVWAv~~l~e~--~~vTgsaDKtIklWk~--~~~l~tf~gHtD~ 181 (745)
T KOG0301|consen 110 GEDGT-LISGSWDSTAKVWRIG---ELVYSLQGHTASVWAVASLPEN--TYVTGSADKTIKLWKG--GTLLKTFSGHTDC 181 (745)
T ss_pred CCcCc-eEecccccceEEecch---hhhcccCCcchheeeeeecCCC--cEEeccCcceeeeccC--Cchhhhhccchhh
Confidence 88876 9999999999999885 4566689999999999999986 5669999999999986 7788888887655
Q ss_pred E---EEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEE
Q 003840 643 M---RFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHE 718 (792)
Q Consensus 643 v---~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~ 718 (792)
+ ++.++ ..+++++.||.|++|++ +++++.++.+|...|.+++...++..|+++++| +++||+.. .+...
T Consensus 182 VRgL~vl~~-~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~-----e~~q~ 254 (745)
T KOG0301|consen 182 VRGLAVLDD-SHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD-----ECVQV 254 (745)
T ss_pred eeeeEEecC-CCeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC-----ceEEE
Confidence 4 45444 67999999999999999 889999999999999999988899999999999 99999975 67777
Q ss_pred eecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 003840 719 LSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSE 754 (792)
Q Consensus 719 ~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~ 754 (792)
+......|+++.+-++|+ |++|++||.|+||..+.
T Consensus 255 I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 255 ITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVDK 289 (745)
T ss_pred EecCccceEEEEEeeCCC-EEEeccCceEEEEEecc
Confidence 777777899999988887 89999999999998874
No 120
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=5.1e-23 Score=228.24 Aligned_cols=273 Identities=20% Similarity=0.368 Sum_probs=213.4
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEECCCC----ceeEEecc---CCCCEEEEEECC-CCCeEEEEeCCCcEEEEeCCC
Q 003840 514 KVICCHFSSDGKLLATGGHDKKAVLWHTDTL----KSKTNLEE---HSSLITDVRFSP-SMPRLATSSFDKTVRVWDADN 585 (792)
Q Consensus 514 ~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~----~~~~~l~~---h~~~V~~i~fsp-dg~~Lasgs~Dg~V~IWdl~s 585 (792)
.+.+|...++-.-|++++.. .++||.+... ++...++. -...+.+|.|.. +.++|||++..|.|.+||+..
T Consensus 41 ~~nAIs~nr~~~qiv~AGrs-~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk 119 (839)
T KOG0269|consen 41 KANAISVNRDINQIVVAGRS-LLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNK 119 (839)
T ss_pred ccceEeecCCcceeEEeccc-ceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecCc
Confidence 45667777888888887643 5677766432 22222221 122356778875 466999999999999999986
Q ss_pred --CCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeC---CeeEEEEecCCCE-EEEEEcCC
Q 003840 586 --PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGR-YLAAAAEN 659 (792)
Q Consensus 586 --~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~sp~~~~-lla~s~dg 659 (792)
..+.+..|..|...|++++|++...++|++|+.||+|++||++..+....+.+ .+..+.|+|.... ++++...|
T Consensus 120 ~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG 199 (839)
T KOG0269|consen 120 SIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSG 199 (839)
T ss_pred cccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCc
Confidence 34556688899999999999999999999999999999999999888777654 4667899987654 55666678
Q ss_pred eEEEEECCCC-eEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCE
Q 003840 660 VVSILDAETQ-ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPS 737 (792)
Q Consensus 660 ~I~i~D~~t~-~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~ 737 (792)
.+.+||++.. ++.+.+.+|.++|.|+.|+|++.+||+|+.| .|+|||+.+... ..+..+. ...++..+.|-|+..+
T Consensus 200 ~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~-~~~~tIn-Tiapv~rVkWRP~~~~ 277 (839)
T KOG0269|consen 200 YLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRA-KPKHTIN-TIAPVGRVKWRPARSY 277 (839)
T ss_pred eEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCc-cceeEEe-ecceeeeeeeccCccc
Confidence 9999999976 6778888999999999999999999999999 999999986533 3333332 3568999999998876
Q ss_pred EEEEEc---CCeEEEEECCCCcEE--EEcccCCCeEEEEEeC-CCCEEEEEeCCCcEE
Q 003840 738 LLVIGC---YQSLELWNMSENKTM--TLTAHEGLIAALAVST-ETGYVASASHDKFVK 789 (792)
Q Consensus 738 L~sgs~---dg~I~IwDl~~~~~~--~~~~h~~~V~sl~fsp-dg~~LaSgs~DG~I~ 789 (792)
.++.+. |-.|+|||++..-+- ++..|...++.++|.. |...|.+|+.||.|.
T Consensus 278 hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~ 335 (839)
T KOG0269|consen 278 HLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVL 335 (839)
T ss_pred hhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHH
Confidence 554433 558999999876544 7889999999999965 556788999999874
No 121
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.90 E-value=5.4e-22 Score=198.33 Aligned_cols=281 Identities=22% Similarity=0.349 Sum_probs=218.7
Q ss_pred eeecCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCce----------eE-----EeccCCCCEEEEEECC-CCCeE
Q 003840 507 SVRASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTDTLKS----------KT-----NLEEHSSLITDVRFSP-SMPRL 569 (792)
Q Consensus 507 ~l~~H~~~V~~lafsp-dg~~Lasgs~Dg~I~vWdl~t~~~----------~~-----~l~~h~~~V~~i~fsp-dg~~L 569 (792)
..+.|.+.|.++.+.+ .|+|+++|+.||.|.|||+++... +. .-.+|...|.++.|.| |...|
T Consensus 38 ~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmF 117 (397)
T KOG4283|consen 38 FVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMF 117 (397)
T ss_pred eeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCcee
Confidence 3467889999999998 789999999999999999975321 11 1125888999999999 56689
Q ss_pred EEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCC--CeEEEEEeCCCcEEEEEcCCCeeEEEeeC---CeeEEE
Q 003840 570 ATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNK--DDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMR 644 (792)
Q Consensus 570 asgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~--~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~ 644 (792)
.+++.|.+++|||.++ ......|+ ..+.|++-+++|-. ..||++|..|-.|++.|+.+|.+...+.+ ++..+.
T Consensus 118 tssSFDhtlKVWDtnT-lQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~ 195 (397)
T KOG4283|consen 118 TSSSFDHTLKVWDTNT-LQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVE 195 (397)
T ss_pred ecccccceEEEeeccc-ceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEE
Confidence 9999999999999998 44444444 56778888887743 46888999999999999999999888765 578899
Q ss_pred EecCCCEEEE-EEcCCeEEEEECCCC-eEEEEe--------------cCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEEC
Q 003840 645 FQPHLGRYLA-AAAENVVSILDAETQ-ACRLSL--------------QGHTKPIDSVCWDPSGELLASVSED-SVRVWTV 707 (792)
Q Consensus 645 ~sp~~~~lla-~s~dg~I~i~D~~t~-~~~~~l--------------~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl 707 (792)
|+|...++++ ++.||.|++||++.. .+...+ ..|.+.|..++|..++.++++++.| .+++|+.
T Consensus 196 Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~ 275 (397)
T KOG4283|consen 196 WSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNM 275 (397)
T ss_pred eccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeec
Confidence 9999988765 566999999999865 333333 2466789999999999999999988 9999999
Q ss_pred CCCCCcceEEEeecCC----CceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEE
Q 003840 708 GSGSEGECVHELSCNG----NKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASA 782 (792)
Q Consensus 708 ~s~~~~~~i~~~~~~~----~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~~~~h~~~V~sl~fspdg~~LaSg 782 (792)
.+++....-.....+. ..+. +. +-+...++..-.++.+.++++-++..+ .+..|...|.|.+|-++-..+.++
T Consensus 276 ~~G~ntl~~~g~~~~n~~~~~~~~-~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg 353 (397)
T KOG4283|consen 276 ESGRNTLREFGPIIHNQTTSFAVH-IQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTG 353 (397)
T ss_pred ccCcccccccccccccccccceEE-Ee-ecccceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCchhhhhcc
Confidence 8875422111111111 1122 22 445555666666789999999998877 677898899999999998899999
Q ss_pred eCCCcEEEe
Q 003840 783 SHDKFVKLW 791 (792)
Q Consensus 783 s~DG~I~IW 791 (792)
..|+.|..|
T Consensus 354 ~~d~ni~~w 362 (397)
T KOG4283|consen 354 DMNGNIYMW 362 (397)
T ss_pred ccCCccccc
Confidence 999999988
No 122
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=4.6e-23 Score=201.54 Aligned_cols=241 Identities=24% Similarity=0.424 Sum_probs=200.8
Q ss_pred ccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCC--ceeEEecccCCCeEEEEE-cCCCCeEEEEEeCCCcEEEEEc
Q 003840 551 EEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG--YSLRTFMGHSASVMSLDF-HPNKDDLICSCDGDGEIRYWSI 627 (792)
Q Consensus 551 ~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~--~~i~~~~~h~~~V~sl~f-spd~~~ll~sgs~Dg~I~iwdl 627 (792)
..|.+.|.++...--|++|+|++.|++|+|+.+++.+ ..+.++.+|.++|..++| +|.-..+|++|+.||.|.||.-
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke 87 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKE 87 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEec
Confidence 4688889998888899999999999999999999866 678899999999999999 5665679999999999999999
Q ss_pred CCCeeEEE-----eeCCeeEEEEecCC--CEEEEEEcCCeEEEEECCCC---eEEEEecCCCCCeEEEEEcCC---C---
Q 003840 628 NNGSCTRV-----FKGGTAQMRFQPHL--GRYLAAAAENVVSILDAETQ---ACRLSLQGHTKPIDSVCWDPS---G--- 691 (792)
Q Consensus 628 ~~~~~~~~-----~~~~~~~v~~sp~~--~~lla~s~dg~I~i~D~~t~---~~~~~l~~h~~~V~sv~~spd---g--- 691 (792)
..+.-.+. ++..+++++|.|.+ -.|+++++||.|.|++.+.. ........|.-.|++++|.|. |
T Consensus 88 ~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~ 167 (299)
T KOG1332|consen 88 ENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLV 167 (299)
T ss_pred CCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCcccc
Confidence 88864433 34567889888865 45677888999999988764 334455679999999999995 4
Q ss_pred --------CEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCC----CEEEEEEcCCeEEEEECCCC---
Q 003840 692 --------ELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTY----PSLLVIGCYQSLELWNMSEN--- 755 (792)
Q Consensus 692 --------~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg----~~L~sgs~dg~I~IwDl~~~--- 755 (792)
+.|++|+.| .|+||+..++ ..+.-+.+..|...++.++|.|.- .+|++++.||+|.||..+..
T Consensus 168 ~~~~~~~~krlvSgGcDn~VkiW~~~~~-~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~ 246 (299)
T KOG1332|consen 168 DQGPAAKVKRLVSGGCDNLVKIWKFDSD-SWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEP 246 (299)
T ss_pred ccCcccccceeeccCCccceeeeecCCc-chhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCc
Confidence 579999999 9999999876 445555689999999999999964 47999999999999977632
Q ss_pred -cEEEEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003840 756 -KTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 792 (792)
Q Consensus 756 -~~~~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd 792 (792)
+...+......++.+.|+..|.+|+.++.|+.|.+|+
T Consensus 247 wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwk 284 (299)
T KOG1332|consen 247 WKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWK 284 (299)
T ss_pred ccccccccCCcceEEEEEeccccEEEEecCCcEEEEEE
Confidence 1224445678899999999999999999999999995
No 123
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.90 E-value=6.6e-23 Score=216.93 Aligned_cols=234 Identities=17% Similarity=0.321 Sum_probs=201.0
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC--ceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCce
Q 003840 512 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL--KSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYS 589 (792)
Q Consensus 512 ~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~--~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~ 589 (792)
...|.+|.+.+||+.|++|++-.+|.|||+... .....+....-.+.+++.+||.++.++++.||.|.|||+.+ ...
T Consensus 465 dnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhn-q~~ 543 (705)
T KOG0639|consen 465 DNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHN-QTL 543 (705)
T ss_pred ccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEccc-cee
Confidence 456899999999999999999999999999754 44445555556788899999999999999999999999998 788
Q ss_pred eEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEE--EeeCCeeEEEEecCCCEEEEEEcCCeEEEEECC
Q 003840 590 LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR--VFKGGTAQMRFQPHLGRYLAAAAENVVSILDAE 667 (792)
Q Consensus 590 i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~--~~~~~~~~v~~sp~~~~lla~s~dg~I~i~D~~ 667 (792)
++.|.+|.+.+.||.++++|.+|. +|+-|.+||.||+++++.+. .|...+.++.++|.+.++++|-.++.+.|....
T Consensus 544 VrqfqGhtDGascIdis~dGtklW-TGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~s 622 (705)
T KOG0639|consen 544 VRQFQGHTDGASCIDISKDGTKLW-TGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTS 622 (705)
T ss_pred eecccCCCCCceeEEecCCCceee-cCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecC
Confidence 999999999999999999987655 99999999999999988664 466788899999999999999999999998875
Q ss_pred CCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCe
Q 003840 668 TQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQS 746 (792)
Q Consensus 668 t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~ 746 (792)
.. ..+.+.-|+..|.++.|.+.|+++++.+.| .+..|...-+ ..+...+ ....|.+|.++.|.++|++|+.|..
T Consensus 623 kp-~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyG---asiFqsk-E~SsVlsCDIS~ddkyIVTGSGdkk 697 (705)
T KOG0639|consen 623 KP-EKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYG---ASIFQSK-ESSSVLSCDISFDDKYIVTGSGDKK 697 (705)
T ss_pred Cc-cceeecccccEEEEEEecccCceeeecCchhhhhhccCccc---cceeecc-ccCcceeeeeccCceEEEecCCCcc
Confidence 44 345566699999999999999999999999 8999998666 3343333 3567999999999999999999998
Q ss_pred EEEEEC
Q 003840 747 LELWNM 752 (792)
Q Consensus 747 I~IwDl 752 (792)
..||.+
T Consensus 698 ATVYeV 703 (705)
T KOG0639|consen 698 ATVYEV 703 (705)
T ss_pred eEEEEE
Confidence 888865
No 124
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.90 E-value=2.1e-22 Score=214.19 Aligned_cols=236 Identities=17% Similarity=0.276 Sum_probs=190.1
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEe------------ccCCCCEEEEEECCCCC-eEEEEeCCCcE
Q 003840 512 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNL------------EEHSSLITDVRFSPSMP-RLATSSFDKTV 578 (792)
Q Consensus 512 ~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l------------~~h~~~V~~i~fspdg~-~Lasgs~Dg~V 578 (792)
...|.++.|++.|..|++.+....++|+|-+........ ++|...++|.+|+|+.+ .|+|++.||++
T Consensus 214 ~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~Dgtl 293 (641)
T KOG0772|consen 214 THQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTL 293 (641)
T ss_pred ccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcE
Confidence 345999999999999999888889999997755544433 46999999999999655 79999999999
Q ss_pred EEEeCCCCCceeEEec-----ccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEE------eeC--CeeEEEE
Q 003840 579 RVWDADNPGYSLRTFM-----GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV------FKG--GTAQMRF 645 (792)
Q Consensus 579 ~IWdl~s~~~~i~~~~-----~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~------~~~--~~~~v~~ 645 (792)
||||+++.......+. +..-.++.++|+++++ +||+|+.||.|.+|+......... +.. .++++.|
T Consensus 294 RiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~-~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~F 372 (641)
T KOG0772|consen 294 RIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGK-LIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISF 372 (641)
T ss_pred EEEecCCchhheeEEeeccCCCcccCceeeecCCCcc-hhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEe
Confidence 9999998555444443 3345789999999987 477999999999999865332211 222 6889999
Q ss_pred ecCCCEEEEEEcCCeEEEEECCCC-eEEEEecC--CCCCeEEEEEcCCCCEEEEEeC-------CeEEEEECCCCCCcce
Q 003840 646 QPHLGRYLAAAAENVVSILDAETQ-ACRLSLQG--HTKPIDSVCWDPSGELLASVSE-------DSVRVWTVGSGSEGEC 715 (792)
Q Consensus 646 sp~~~~lla~s~dg~I~i~D~~t~-~~~~~l~~--h~~~V~sv~~spdg~~Las~s~-------d~I~IwDl~s~~~~~~ 715 (792)
++++++|++-+.|+.+++||++.. +++....+ ...+-+.+||+|+.++|++|+. +.+.+||..+. ..
T Consensus 373 S~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~---d~ 449 (641)
T KOG0772|consen 373 SYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTL---DT 449 (641)
T ss_pred ccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccce---ee
Confidence 999999999999999999999986 55555544 2345678999999999999863 16899998765 66
Q ss_pred EEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEE
Q 003840 716 VHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWN 751 (792)
Q Consensus 716 i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwD 751 (792)
+..+......|..|.|+|.-+-|++++.||.++||=
T Consensus 450 v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 450 VYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVYY 485 (641)
T ss_pred EEEecCCCceEEEEeecchhhheeeecCCCceEEEE
Confidence 777777788899999999999999999999998873
No 125
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.90 E-value=1.2e-22 Score=220.93 Aligned_cols=274 Identities=23% Similarity=0.317 Sum_probs=208.1
Q ss_pred EEEEcC---CCCEEEEEeCCCeEEEEECCCCcee------EEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCC
Q 003840 517 CCHFSS---DGKLLATGGHDKKAVLWHTDTLKSK------TNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG 587 (792)
Q Consensus 517 ~lafsp---dg~~Lasgs~Dg~I~vWdl~t~~~~------~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~ 587 (792)
++.|++ ....||.+.+||.|.+||.+..... +.+..|...|.++.|.|....|++++.|.++++||+.. .
T Consensus 54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~-s 132 (720)
T KOG0321|consen 54 ADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKT-S 132 (720)
T ss_pred cccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeecc-c
Confidence 355655 3458999999999999998754332 44567999999999999777999999999999999997 5
Q ss_pred ceeEE--ecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeE--E--------Eee------------------
Q 003840 588 YSLRT--FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT--R--------VFK------------------ 637 (792)
Q Consensus 588 ~~i~~--~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~--~--------~~~------------------ 637 (792)
.++.. +.+|.+.|.++||.+++..+|++|+.||.|.|||++....- . .++
T Consensus 133 ~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA 212 (720)
T KOG0321|consen 133 RLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKA 212 (720)
T ss_pred eeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccccccc
Confidence 55544 88999999999999999999999999999999999754310 0 000
Q ss_pred --CCeeE---EEEecCCCEEEEEEc-CCeEEEEECCCCeEEEEe--------cCC---CCCeEEEEEcCCCCEEEEEeCC
Q 003840 638 --GGTAQ---MRFQPHLGRYLAAAA-ENVVSILDAETQACRLSL--------QGH---TKPIDSVCWDPSGELLASVSED 700 (792)
Q Consensus 638 --~~~~~---v~~sp~~~~lla~s~-dg~I~i~D~~t~~~~~~l--------~~h---~~~V~sv~~spdg~~Las~s~d 700 (792)
..+.. +.+..|...|++++. |+.|+|||+++....+.. ..| ...+.+++.+..|.+|++.+.|
T Consensus 213 ~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD 292 (720)
T KOG0321|consen 213 ASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTD 292 (720)
T ss_pred ccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecC
Confidence 01222 456667788888777 999999999986544332 123 2357788888888877665556
Q ss_pred -eEEEEECCCCCCcceEEEeecCCCc--eEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE--EEcccCCCeEEEEEeCC
Q 003840 701 -SVRVWTVGSGSEGECVHELSCNGNK--FHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM--TLTAHEGLIAALAVSTE 775 (792)
Q Consensus 701 -~I~IwDl~s~~~~~~i~~~~~~~~~--i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~--~~~~h~~~V~sl~fspd 775 (792)
.|++|++.+... ..+..+.++... ...-..+||+.+|++|+.|...++|.+.+...- .+.+|.-.|++++|.|.
T Consensus 293 ~sIy~ynm~s~s~-sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS 371 (720)
T KOG0321|consen 293 NSIYFYNMRSLSI-SPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPS 371 (720)
T ss_pred CcEEEEeccccCc-CchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccc
Confidence 999999987532 333333333222 233467899999999999999999999887643 67899999999999873
Q ss_pred -CCEEEEEeCCCcEEEeC
Q 003840 776 -TGYVASASHDKFVKLWK 792 (792)
Q Consensus 776 -g~~LaSgs~DG~I~IWd 792 (792)
-.-+|+|++|..++||+
T Consensus 372 ~~t~v~TcSdD~~~kiW~ 389 (720)
T KOG0321|consen 372 ATTPVATCSDDFRVKIWR 389 (720)
T ss_pred cCCCceeeccCcceEEEe
Confidence 23577889999999996
No 126
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.90 E-value=3.6e-23 Score=212.02 Aligned_cols=261 Identities=17% Similarity=0.256 Sum_probs=220.0
Q ss_pred CCCCCCCCcceeccCCcceeeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEEC
Q 003840 484 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFS 563 (792)
Q Consensus 484 ~~~~d~~~~~~d~~~~~~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fs 563 (792)
+++.|+.+++|++... .+...++.|.+.|..|+++. ..+++++.|++|+.|.++. ..+.++.+ ...+..|.-+
T Consensus 84 SGs~DG~VkiWnlsqR---~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~-~p~~tilg-~s~~~gIdh~ 156 (433)
T KOG0268|consen 84 SGSCDGEVKIWNLSQR---ECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDG-PPLHTILG-KSVYLGIDHH 156 (433)
T ss_pred ccccCceEEEEehhhh---hhhheeecccCceeeEEecc--cceEEecCCcceeeeeccC-Ccceeeec-cccccccccc
Confidence 5678888999998876 46788999999999999988 5788999999999999875 35555543 4557777777
Q ss_pred CCCCeEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEe--eCCee
Q 003840 564 PSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF--KGGTA 641 (792)
Q Consensus 564 pdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~--~~~~~ 641 (792)
..+..++||+.+ |.|||... ..++..+.-....|.++.|+|....+|++|+.|+.|.+||++.+..++.+ .-..+
T Consensus 157 ~~~~~FaTcGe~--i~IWD~~R-~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN 233 (433)
T KOG0268|consen 157 RKNSVFATCGEQ--IDIWDEQR-DNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTN 233 (433)
T ss_pred cccccccccCce--eeeccccc-CCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeecccc
Confidence 778889999876 99999986 67888888888899999999999999999999999999999999887654 45678
Q ss_pred EEEEecCCCEEEEEEcCCeEEEEECCCC-eEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEe
Q 003840 642 QMRFQPHLGRYLAAAAENVVSILDAETQ-ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHEL 719 (792)
Q Consensus 642 ~v~~sp~~~~lla~s~dg~I~i~D~~t~-~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~ 719 (792)
.++|+|..-.++++..|..++.||++.. .++....+|.+.|.+|+|+|.|.-|++|+.| +|+||.++.+......++-
T Consensus 234 ~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtk 313 (433)
T KOG0268|consen 234 TICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTK 313 (433)
T ss_pred ceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHh
Confidence 8999997777888888999999999986 6778888999999999999999999999999 9999999876443322211
Q ss_pred ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCc
Q 003840 720 SCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK 756 (792)
Q Consensus 720 ~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~ 756 (792)
.-..|.++.|+.|.+||++|+.|+.|++|.....+
T Consensus 314 --RMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Ase 348 (433)
T KOG0268|consen 314 --RMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASE 348 (433)
T ss_pred --hhheeeEEEEeccccEEEecCCCcceeeeecchhh
Confidence 12358999999999999999999999999876543
No 127
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=7e-24 Score=233.28 Aligned_cols=237 Identities=27% Similarity=0.483 Sum_probs=211.2
Q ss_pred eeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCC
Q 003840 505 ANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDAD 584 (792)
Q Consensus 505 ~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~ 584 (792)
.+.+-.|...|.|+..-..++.+++|+.|..+-+|.+.....+..|.+|...|.+|.|+++..+|++|+.+|+|++||++
T Consensus 21 ~~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDle 100 (825)
T KOG0267|consen 21 TREFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLE 100 (825)
T ss_pred chhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehh
Confidence 34567899999999998888999999999999999999888888899999999999999999999999999999999999
Q ss_pred CCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCCeeEEEEecCCCEEEEEEcCCeEEEE
Q 003840 585 NPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSIL 664 (792)
Q Consensus 585 s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~lla~s~dg~I~i~ 664 (792)
. .+.++++.+|...+.++.|+|.+. ++++|+.|+.+++||++...|.
T Consensus 101 e-Ak~vrtLtgh~~~~~sv~f~P~~~-~~a~gStdtd~~iwD~Rk~Gc~------------------------------- 147 (825)
T KOG0267|consen 101 E-AKIVRTLTGHLLNITSVDFHPYGE-FFASGSTDTDLKIWDIRKKGCS------------------------------- 147 (825)
T ss_pred h-hhhhhhhhccccCcceeeeccceE-EeccccccccceehhhhccCce-------------------------------
Confidence 7 788999999999999999999976 4578888999999988754444
Q ss_pred ECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEc
Q 003840 665 DAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGC 743 (792)
Q Consensus 665 D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~ 743 (792)
+.+.+|...|.++.|+|+|++++.+++| .++|||+..+ +.+.+|..|...+.++.|+|..-.++.|+.
T Consensus 148 --------~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~ag---k~~~ef~~~e~~v~sle~hp~e~Lla~Gs~ 216 (825)
T KOG0267|consen 148 --------HTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAG---KLSKEFKSHEGKVQSLEFHPLEVLLAPGSS 216 (825)
T ss_pred --------eeecCCcceeEEEeecCCCceeeccCCcceeeeeccccc---ccccccccccccccccccCchhhhhccCCC
Confidence 3445577889999999999999999998 9999999777 788899999999999999999999999999
Q ss_pred CCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEeCC
Q 003840 744 YQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHD 785 (792)
Q Consensus 744 dg~I~IwDl~~~~~~-~~~~h~~~V~sl~fspdg~~LaSgs~D 785 (792)
|++|++||+++.+.+ ........|.+++|+++++.+++|..+
T Consensus 217 d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 217 DRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred CceeeeeccceeEEeeccCCccCCceeeeecCCceeeecCchh
Confidence 999999999988877 444557889999999999998887654
No 128
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=1.5e-21 Score=220.48 Aligned_cols=275 Identities=15% Similarity=0.235 Sum_probs=216.6
Q ss_pred ecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC-ceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCC
Q 003840 509 RASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL-KSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG 587 (792)
Q Consensus 509 ~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~-~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~ 587 (792)
.+|+...+.|+|.++|++|++++.||.|++|+.... +...++..+...|.+++... .+|++|+.+++|.+|.+.+ +
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s--~~f~~~s~~~tv~~y~fps-~ 86 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYS--NHFLTGSEQNTVLRYKFPS-G 86 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecc--cceEEeeccceEEEeeCCC-C
Confidence 378889999999999999999999999999998765 55555555888888887754 4999999999999999987 4
Q ss_pred ceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEE---eeCCeeEEEEecCCCEEEEEEcCCeEEEE
Q 003840 588 YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV---FKGGTAQMRFQPHLGRYLAAAAENVVSIL 664 (792)
Q Consensus 588 ~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~---~~~~~~~v~~sp~~~~lla~s~dg~I~i~ 664 (792)
..-..+....-++.+++|+.+|+ +++.|+.|-.|++.++.+....+. +++++.++.|+|.++.|++.+.||.|+||
T Consensus 87 ~~~~iL~Rftlp~r~~~v~g~g~-~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw 165 (933)
T KOG1274|consen 87 EEDTILARFTLPIRDLAVSGSGK-MIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIW 165 (933)
T ss_pred CccceeeeeeccceEEEEecCCc-EEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEE
Confidence 44444555667899999999876 566899999999999988765554 45678999999999999999999999999
Q ss_pred ECCCCeEEEEecCC--------CCCeEEEEEcCCCCEEE-EEeCCeEEEEECCCCCCcceEEEeecCCCceEEEEEeCCC
Q 003840 665 DAETQACRLSLQGH--------TKPIDSVCWDPSGELLA-SVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTY 735 (792)
Q Consensus 665 D~~t~~~~~~l~~h--------~~~V~sv~~spdg~~La-s~s~d~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg 735 (792)
|+.++.+..++.+- ...+..++|+|+|..|+ .+.++.|++|+.........++ .+.+...+..+.|+|.|
T Consensus 166 ~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr-~~~~ss~~~~~~wsPnG 244 (933)
T KOG1274|consen 166 DLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLR-DKLSSSKFSDLQWSPNG 244 (933)
T ss_pred EcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeec-ccccccceEEEEEcCCC
Confidence 99998877766531 34467789999955544 4555599999998764332222 22334459999999999
Q ss_pred CEEEEEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEe
Q 003840 736 PSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLW 791 (792)
Q Consensus 736 ~~L~sgs~dg~I~IwDl~~~~~~~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IW 791 (792)
.|||+++.+|.|.|||+++.+. ......|++++|.|++..|-.-...|...+|
T Consensus 245 ~YiAAs~~~g~I~vWnv~t~~~---~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~~ 297 (933)
T KOG1274|consen 245 KYIAASTLDGQILVWNVDTHER---HEFKRAVCCEAWKPNANAITLITALGTLGVS 297 (933)
T ss_pred cEEeeeccCCcEEEEecccchh---ccccceeEEEecCCCCCeeEEEeeccccccC
Confidence 9999999999999999998322 3445679999999988766554455554443
No 129
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.90 E-value=7.2e-22 Score=216.82 Aligned_cols=282 Identities=21% Similarity=0.297 Sum_probs=220.4
Q ss_pred eeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC--ceeEE-----eccCCCCEEEEEECCCCCeEEEEeCCCcEE
Q 003840 507 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL--KSKTN-----LEEHSSLITDVRFSPSMPRLATSSFDKTVR 579 (792)
Q Consensus 507 ~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~--~~~~~-----l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~ 579 (792)
.+.||.+.|+++.|+|++..|++++.|.++.+|.-++. --+.. +.+.....+...|+|+++.|++-+..|..+
T Consensus 262 ll~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~h 341 (764)
T KOG1063|consen 262 LLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFH 341 (764)
T ss_pred hhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEE
Confidence 45699999999999999999999999999999986543 22222 223456789999999999999999999999
Q ss_pred EEeCCCCC--ceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeE-EE------eeCCeeEEEEecCCC
Q 003840 580 VWDADNPG--YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT-RV------FKGGTAQMRFQPHLG 650 (792)
Q Consensus 580 IWdl~s~~--~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~-~~------~~~~~~~v~~sp~~~ 650 (792)
+|...... .....+.+|.+.|.+|+|+|.|++|+ +.+.|-+-|+|-.-..+.. .. +.....|++|-+..-
T Consensus 342 lWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflL-svs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~ 420 (764)
T KOG1063|consen 342 LWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLL-SVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDL 420 (764)
T ss_pred EEeccCccceeeccccccccccceeeeecCCCCEEE-EeccccceeeecccccccceeeecccccccccceeeehccCCc
Confidence 99933322 22345668999999999999998665 8888999999865511111 11 112356677766556
Q ss_pred EEEEEEcCCeEEEEECC-------------------------------------------CCeE----------------
Q 003840 651 RYLAAAAENVVSILDAE-------------------------------------------TQAC---------------- 671 (792)
Q Consensus 651 ~lla~s~dg~I~i~D~~-------------------------------------------t~~~---------------- 671 (792)
.++.|+.+..+++|+.. ++..
T Consensus 421 ~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L 500 (764)
T KOG1063|consen 421 QFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCEL 500 (764)
T ss_pred eeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhc
Confidence 67777777788887532 0100
Q ss_pred -----------------EEEecCCCCCeEEEEEcCCCCEEEEEeCC------eEEEEECCCCCCcceEEEeecCCCceEE
Q 003840 672 -----------------RLSLQGHTKPIDSVCWDPSGELLASVSED------SVRVWTVGSGSEGECVHELSCNGNKFHS 728 (792)
Q Consensus 672 -----------------~~~l~~h~~~V~sv~~spdg~~Las~s~d------~I~IwDl~s~~~~~~i~~~~~~~~~i~s 728 (792)
+..+.+|...|++++.+|+++++|+++.. .|++|+..+. ..+..+..|.-.|+.
T Consensus 501 ~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W---~~~~~L~~HsLTVT~ 577 (764)
T KOG1063|consen 501 TEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANW---LQVQELEGHSLTVTR 577 (764)
T ss_pred cCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccch---hhhheecccceEEEE
Confidence 01134788899999999999999998753 5999998765 566688899999999
Q ss_pred EEEeCCCCEEEEEEcCCeEEEEECCCCcEE-----EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003840 729 CVFHPTYPSLLVIGCYQSLELWNMSENKTM-----TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 792 (792)
Q Consensus 729 i~fspdg~~L~sgs~dg~I~IwDl~~~~~~-----~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd 792 (792)
++|+||+++|++.+.|+++.+|...+.... ....|...|+++.|+|++.++||+|.|.+|+||.
T Consensus 578 l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~ 646 (764)
T KOG1063|consen 578 LAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWE 646 (764)
T ss_pred EEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEe
Confidence 999999999999999999999988655433 3668999999999999999999999999999994
No 130
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=2.6e-20 Score=204.58 Aligned_cols=351 Identities=14% Similarity=0.181 Sum_probs=245.9
Q ss_pred cceEEEEeCCCeeee---cCCCeeEeCCCcchhhcccccccCCCCCCceeeeccCCCCC----CCCCCCcceeccCCcce
Q 003840 430 KPLMMFGTDGAGTLT---SPSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTD----PRDAGGRGMDVSQGFSF 502 (792)
Q Consensus 430 k~~l~~s~Dg~~~~s---s~s~~lWD~~tg~~~~~~~~~~~~g~~d~~v~~~l~~d~~~----~~d~~~~~~d~~~~~~~ 502 (792)
.-.|.|+.+..-++. .+.++||++...=+ ....-.|..|..++..+..++.. +.++.+-.||+.+ .
T Consensus 28 I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~----~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~---l 100 (691)
T KOG2048|consen 28 IVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWF----LEPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLHT---L 100 (691)
T ss_pred eEEEEEeccCCceeeeccCCcEEEEccCCCce----eeEEEecCCCCceeeEEEccCCeEEeecCCceEEEEeccc---C
Confidence 345777777777555 44559999988432 22223456777788776554422 3444455566555 4
Q ss_pred eeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeE--EeccCCCCEEEEEECCCCCeEEEEeCCCcEEE
Q 003840 503 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKT--NLEEHSSLITDVRFSPSMPRLATSSFDKTVRV 580 (792)
Q Consensus 503 ~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~--~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~I 580 (792)
+....+....+.|++++.+|.++.++.|++||.++.++...++... .|....+.|.+++|++++..|++|+.||.|++
T Consensus 101 k~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iri 180 (691)
T KOG2048|consen 101 KQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRI 180 (691)
T ss_pred ceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEE
Confidence 6777788889999999999999999999999988888887776544 34456789999999999999999999999999
Q ss_pred EeCCCCCceeE------Eec-ccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEe---eCCeeEEEEecCCC
Q 003840 581 WDADNPGYSLR------TFM-GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF---KGGTAQMRFQPHLG 650 (792)
Q Consensus 581 Wdl~s~~~~i~------~~~-~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~---~~~~~~v~~sp~~~ 650 (792)
||+.++..... .+. +...-|+++.|..++ .|++|+..|+|.+||...+..+..+ ...+.+++..++++
T Consensus 181 wd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~--tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d 258 (691)
T KOG2048|consen 181 WDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS--TIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNED 258 (691)
T ss_pred EEcCCCceEEEeeecccccccCCceEEEEEEEeecC--cEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCC
Confidence 99987443321 111 133458888888664 5779999999999999999887665 56788999999999
Q ss_pred EEEEEEcCCeEEEEECCCCeE----EEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCC----------------
Q 003840 651 RYLAAAAENVVSILDAETQAC----RLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGS---------------- 709 (792)
Q Consensus 651 ~lla~s~dg~I~i~D~~t~~~----~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s---------------- 709 (792)
++++++.|+.|.-|...+.+. ......|...|.+++..++ .|++|+.| .+.+-..+.
T Consensus 259 ~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~ 336 (691)
T KOG2048|consen 259 RVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSREFKNMDHRQKNLFPASD 336 (691)
T ss_pred eEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEEccccccCchhhhccccccccc
Confidence 999999999999988776633 2233457888888887765 66666666 444433322
Q ss_pred --------------------------C------CCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC----
Q 003840 710 --------------------------G------SEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMS---- 753 (792)
Q Consensus 710 --------------------------~------~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~---- 753 (792)
. .....++........|.+.+.+|+|.+|+.+... .++||.+.
T Consensus 337 ~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~~-~~~iy~L~~~~~ 415 (691)
T KOG2048|consen 337 RVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISPDGNLIAISTVS-RTKIYRLQPDPN 415 (691)
T ss_pred eeecCccceEEEEeccccccceeccCcccccccChhhheeeecCCccceeeeccCCCCCEEEEeecc-ceEEEEeccCcc
Confidence 1 0001111122234458889999999998887721 12222221
Q ss_pred --------------------------------------------CCcEE-----EEcccCCCeEEEEEeCCCCEEEEEeC
Q 003840 754 --------------------------------------------ENKTM-----TLTAHEGLIAALAVSTETGYVASASH 784 (792)
Q Consensus 754 --------------------------------------------~~~~~-----~~~~h~~~V~sl~fspdg~~LaSgs~ 784 (792)
+.... ........|+.+..+++|.|||+.+.
T Consensus 416 vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t 495 (691)
T KOG2048|consen 416 VKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAIST 495 (691)
T ss_pred eeEEEeccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEec
Confidence 11100 00113457889999999999999999
Q ss_pred CCcEEEeC
Q 003840 785 DKFVKLWK 792 (792)
Q Consensus 785 DG~I~IWd 792 (792)
+|.|.+|+
T Consensus 496 ~g~I~v~n 503 (691)
T KOG2048|consen 496 RGQIFVYN 503 (691)
T ss_pred cceEEEEE
Confidence 99999996
No 131
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=2.4e-20 Score=204.85 Aligned_cols=278 Identities=15% Similarity=0.217 Sum_probs=228.8
Q ss_pred eeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-eeEEeccC-CCCEEEEEECCCCCeEEEEeCCCcEEEEe
Q 003840 505 ANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK-SKTNLEEH-SSLITDVRFSPSMPRLATSSFDKTVRVWD 582 (792)
Q Consensus 505 ~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~-~~~~l~~h-~~~V~~i~fspdg~~Lasgs~Dg~V~IWd 582 (792)
.+.+.--...|+|+||+.+.+.||++-.||.|.||++...- ....+.++ ...|.+++|+ ++..|++.+.+|.|.-||
T Consensus 18 crf~d~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwD 96 (691)
T KOG2048|consen 18 CRFVDYKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWD 96 (691)
T ss_pred EEEEeeeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEe
Confidence 34455567889999999999999999999999999998654 34455554 5679999999 455899999999999999
Q ss_pred CCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEe-----eCCeeEEEEecCCCEEEEEEc
Q 003840 583 ADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF-----KGGTAQMRFQPHLGRYLAAAA 657 (792)
Q Consensus 583 l~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~-----~~~~~~v~~sp~~~~lla~s~ 657 (792)
+.+ .+....+....+.|++++.+|.+. .++.|++||.++++++..++..... ++.+.++.|++++.+++.|+.
T Consensus 97 l~~-lk~~~~~d~~gg~IWsiai~p~~~-~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~ 174 (691)
T KOG2048|consen 97 LHT-LKQKYNIDSNGGAIWSIAINPENT-ILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSI 174 (691)
T ss_pred ccc-CceeEEecCCCcceeEEEeCCccc-eEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEeccc
Confidence 998 777888888899999999999875 5558888999999999888765432 467889999999999999999
Q ss_pred CCeEEEEECCCCeEEEEe-----cC---CCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEeecCCCceEEE
Q 003840 658 ENVVSILDAETQACRLSL-----QG---HTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSC 729 (792)
Q Consensus 658 dg~I~i~D~~t~~~~~~l-----~~---h~~~V~sv~~spdg~~Las~s~d~I~IwDl~s~~~~~~i~~~~~~~~~i~si 729 (792)
||.|++||..++..+... .. ...-|++|.|-.++.++..-+.++|.+||...+ ..+..+..|...|.++
T Consensus 175 Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~g---TLiqS~~~h~adVl~L 251 (691)
T KOG2048|consen 175 DGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIFG---TLIQSHSCHDADVLAL 251 (691)
T ss_pred CceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEecCCceEEEEcccCc---chhhhhhhhhcceeEE
Confidence 999999999998766521 11 223478888887765554444559999999776 7788888999999999
Q ss_pred EEeCCCCEEEEEEcCCeEEEEECCCCcE--E---EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEE
Q 003840 730 VFHPTYPSLLVIGCYQSLELWNMSENKT--M---TLTAHEGLIAALAVSTETGYVASASHDKFVKL 790 (792)
Q Consensus 730 ~fspdg~~L~sgs~dg~I~IwDl~~~~~--~---~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~I 790 (792)
+..++++++++++.|+.|..|...+++. + ....|...|.+++..++ .|++|+.|+.+.|
T Consensus 252 av~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i 315 (691)
T KOG2048|consen 252 AVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAI 315 (691)
T ss_pred EEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEE
Confidence 9999999999999999999998877643 1 44578899999999877 8999999998875
No 132
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=5.6e-21 Score=215.93 Aligned_cols=239 Identities=17% Similarity=0.267 Sum_probs=201.9
Q ss_pred ccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCC
Q 003840 551 EEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG 630 (792)
Q Consensus 551 ~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~ 630 (792)
..|....+.|+|.++|++|++++.||.|++|+..+....-.++..+...|.+++.... .|++|+.+++|.+|.+..+
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~---~f~~~s~~~tv~~y~fps~ 86 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSN---HFLTGSEQNTVLRYKFPSG 86 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeeccc---ceEEeeccceEEEeeCCCC
Confidence 3688889999999999999999999999999988753444444447788888887643 6779999999999999876
Q ss_pred e---eEEEeeCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEE
Q 003840 631 S---CTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWT 706 (792)
Q Consensus 631 ~---~~~~~~~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwD 706 (792)
. .+..|..++.+++|+.++.++++|+.|-.|++.++.+....+.+.+|+++|.+|.|+|.+++||+.+.| .|+|||
T Consensus 87 ~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~ 166 (933)
T KOG1274|consen 87 EEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWD 166 (933)
T ss_pred CccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEE
Confidence 5 567788899999999999999999999999999999999999999999999999999999999999988 999999
Q ss_pred CCCCCCcceEEEe----ecC-CCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EE--cccCCCeEEEEEeCCCCE
Q 003840 707 VGSGSEGECVHEL----SCN-GNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TL--TAHEGLIAALAVSTETGY 778 (792)
Q Consensus 707 l~s~~~~~~i~~~----~~~-~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~~--~~h~~~V~sl~fspdg~~ 778 (792)
+.++.....+..+ ... ...+..++|+|++..|++.+.|+.|++|+..+.... .+ ..+...++++.|+|+|+|
T Consensus 167 ~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~Y 246 (933)
T KOG1274|consen 167 LQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKY 246 (933)
T ss_pred cccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcE
Confidence 9876432222211 111 334677899999999999999999999999988765 23 234555999999999999
Q ss_pred EEEEeCCCcEEEeC
Q 003840 779 VASASHDKFVKLWK 792 (792)
Q Consensus 779 LaSgs~DG~I~IWd 792 (792)
||+++.||.|.|||
T Consensus 247 iAAs~~~g~I~vWn 260 (933)
T KOG1274|consen 247 IAASTLDGQILVWN 260 (933)
T ss_pred EeeeccCCcEEEEe
Confidence 99999999999997
No 133
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=1.5e-21 Score=196.59 Aligned_cols=243 Identities=21% Similarity=0.350 Sum_probs=207.2
Q ss_pred ceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEE
Q 003840 545 KSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRY 624 (792)
Q Consensus 545 ~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~i 624 (792)
..++.+.+|.+.|+.++.......+.+++.|.+.+||.+++ +.++..+.+|.+.|++|+|++.+ .|+++++.|++-.|
T Consensus 139 ~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Es-g~CL~~Y~GH~GSVNsikfh~s~-~L~lTaSGD~taHI 216 (481)
T KOG0300|consen 139 RLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLES-GACLATYTGHTGSVNSIKFHNSG-LLLLTASGDETAHI 216 (481)
T ss_pred eehhhhcccccceeeehhhcCCcceeecccccceeEEeecc-ccceeeecccccceeeEEecccc-ceEEEccCCcchHH
Confidence 45677889999999999988888999999999999999998 88999999999999999999986 47779999999999
Q ss_pred EEc------CCC--------e--------------------------eEEEeeC---CeeEEEEecCCCEEEEEEcCCeE
Q 003840 625 WSI------NNG--------S--------------------------CTRVFKG---GTAQMRFQPHLGRYLAAAAENVV 661 (792)
Q Consensus 625 wdl------~~~--------~--------------------------~~~~~~~---~~~~v~~sp~~~~lla~s~dg~I 661 (792)
|.. ... + .+..+++ .+.+..|...+..+++++.|.+.
T Consensus 217 W~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTA 296 (481)
T KOG0300|consen 217 WKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTA 296 (481)
T ss_pred HHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccc
Confidence 972 110 0 0111222 23445577788899999999999
Q ss_pred EEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEE
Q 003840 662 SILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLV 740 (792)
Q Consensus 662 ~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~s 740 (792)
.+||+++++++..+.+|....+.++-+|.-+++++.+.| +.++||++ +....+..|.+|...|+++.|.-+.+ +++
T Consensus 297 nlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFR--eaI~sV~VFQGHtdtVTS~vF~~dd~-vVS 373 (481)
T KOG0300|consen 297 NLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFR--EAIQSVAVFQGHTDTVTSVVFNTDDR-VVS 373 (481)
T ss_pred eeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccch--hhcceeeeecccccceeEEEEecCCc-eee
Confidence 999999999999999999999999999999999999999 99999998 44577888999999999999998876 899
Q ss_pred EEcCCeEEEEECCCCcE-EEEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003840 741 IGCYQSLELWNMSENKT-MTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 792 (792)
Q Consensus 741 gs~dg~I~IwDl~~~~~-~~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd 792 (792)
|+.|.+|+|||+++-+. +.......+++.++++..+.+|+.--++..|+|||
T Consensus 374 gSDDrTvKvWdLrNMRsplATIRtdS~~NRvavs~g~~iIAiPhDNRqvRlfD 426 (481)
T KOG0300|consen 374 GSDDRTVKVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAIPHDNRQVRLFD 426 (481)
T ss_pred cCCCceEEEeeeccccCcceeeecCCccceeEeecCCceEEeccCCceEEEEe
Confidence 99999999999987653 34455677899999998888888887788899987
No 134
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=5.7e-21 Score=202.02 Aligned_cols=252 Identities=15% Similarity=0.222 Sum_probs=200.7
Q ss_pred CeEEEEECCCCceeEEeccCC-CCEEEEEECCCCCeEEEEeC-CCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCe
Q 003840 534 KKAVLWHTDTLKSKTNLEEHS-SLITDVRFSPSMPRLATSSF-DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDD 611 (792)
Q Consensus 534 g~I~vWdl~t~~~~~~l~~h~-~~V~~i~fspdg~~Lasgs~-Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ 611 (792)
.++.+||+.+|....++++.. ..-.++..- ++.+++++.. ...|.+|.+....... ......+.|.+++-+|+|.
T Consensus 18 ~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~-q~~v~Pg~v~al~s~n~G~- 94 (476)
T KOG0646|consen 18 INCIVWDLRTGTSLLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVV-QYIVLPGPVHALASSNLGY- 94 (476)
T ss_pred cceeEEecCCCceeEEecCcccccchhhhhh-chhheeeecccCccccccccCchhhhh-hhcccccceeeeecCCCce-
Confidence 459999999999998888652 211112111 3356666654 4478999998633333 3344678899999999976
Q ss_pred EEEEEeCCCcEEEEEcCCCeeEEEeeC---CeeEEEEecCCCEEEEEEcCCeEEEEECC---------CCeEEEEecCCC
Q 003840 612 LICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAAENVVSILDAE---------TQACRLSLQGHT 679 (792)
Q Consensus 612 ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~sp~~~~lla~s~dg~I~i~D~~---------t~~~~~~l~~h~ 679 (792)
+++.|+..|.|++|.+.+|..+..+.. .++++.|+.++.+|++++.||.|.+|++. +-+++..|..|.
T Consensus 95 ~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~Ht 174 (476)
T KOG0646|consen 95 FLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHT 174 (476)
T ss_pred EEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCc
Confidence 444676899999999999998877654 58899999999999999999999999763 346788899999
Q ss_pred CCeEEEEEcCCC--CEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCc
Q 003840 680 KPIDSVCWDPSG--ELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK 756 (792)
Q Consensus 680 ~~V~sv~~spdg--~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~ 756 (792)
-+|+.+...+.| .+|++++.| ++++||+..+ ..+..+. ....+.+|+++|-+..+++|+.+|.|.+.++....
T Consensus 175 lsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g---~LLlti~-fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~ 250 (476)
T KOG0646|consen 175 LSITDLQIGSGGTNARLYTASEDRTIKLWDLSLG---VLLLTIT-FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLS 250 (476)
T ss_pred ceeEEEEecCCCccceEEEecCCceEEEEEeccc---eeeEEEe-cCCcceeEEEcccccEEEecCCcceEEeeehhcCC
Confidence 999999887753 589999999 9999999887 4444443 45689999999999999999999999998875432
Q ss_pred -----------------EEEEcccCC--CeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003840 757 -----------------TMTLTAHEG--LIAALAVSTETGYVASASHDKFVKLWK 792 (792)
Q Consensus 757 -----------------~~~~~~h~~--~V~sl~fspdg~~LaSgs~DG~I~IWd 792 (792)
...+.+|.+ .|+|++++.||.+|++|++||.|+|||
T Consensus 251 ~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWd 305 (476)
T KOG0646|consen 251 GQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWD 305 (476)
T ss_pred cccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEe
Confidence 125678888 999999999999999999999999997
No 135
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.88 E-value=1.5e-20 Score=206.56 Aligned_cols=360 Identities=17% Similarity=0.240 Sum_probs=259.7
Q ss_pred cceEEEEeCCCeeeecCCC---eeEeCC--CcchhhcccccccCC-CCC-CceeeeccCCC---CCCCCCCCcceeccCC
Q 003840 430 KPLMMFGTDGAGTLTSPSN---QLWDDK--DLELRADMDRLVEDG-SLD-DNVESFLSHDD---TDPRDAGGRGMDVSQG 499 (792)
Q Consensus 430 k~~l~~s~Dg~~~~ss~s~---~lWD~~--tg~~~~~~~~~~~~g-~~d-~~v~~~l~~d~---~~~~d~~~~~~d~~~~ 499 (792)
...+-|.|++..+++++.+ .||... +|..+. .-++.+.+ ... -.-..|..+.+ ..+..++-++|...+.
T Consensus 270 V~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~-~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~ 348 (764)
T KOG1063|consen 270 VYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVD-VVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDK 348 (764)
T ss_pred eEEEEEccchhhheecccCcceEEEecCCccceEEE-EEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCc
Confidence 4468899999888887666 779654 344432 23333333 111 12222222222 1234455566665555
Q ss_pred cceeeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECC----CCceeEEeccCCCCEEEEEECCCCCeEEEEeCC
Q 003840 500 FSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTD----TLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD 575 (792)
Q Consensus 500 ~~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~----t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~D 575 (792)
..+.....+.||.+.|.+++|+|.|++|++.+.|-+-+||--- +...+..-.-|...++|++|-+....|++|...
T Consensus 349 ~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdE 428 (764)
T KOG1063|consen 349 TFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADE 428 (764)
T ss_pred cceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeecccc
Confidence 6667777889999999999999999999999999999998643 122333344688999999999877789999999
Q ss_pred CcEEEEeCCC-------------------------------------------CCc------------------------
Q 003840 576 KTVRVWDADN-------------------------------------------PGY------------------------ 588 (792)
Q Consensus 576 g~V~IWdl~s-------------------------------------------~~~------------------------ 588 (792)
+.+|+|+... ++.
T Consensus 429 KVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~Edq 508 (764)
T KOG1063|consen 429 KVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQ 508 (764)
T ss_pred eeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHH
Confidence 9999997741 000
Q ss_pred --------eeEEecccCCCeEEEEEcCCCCeEEEEEeCC-----CcEEEEEcCCCeeEEEeeC---CeeEEEEecCCCEE
Q 003840 589 --------SLRTFMGHSASVMSLDFHPNKDDLICSCDGD-----GEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRY 652 (792)
Q Consensus 589 --------~i~~~~~h~~~V~sl~fspd~~~ll~sgs~D-----g~I~iwdl~~~~~~~~~~~---~~~~v~~sp~~~~l 652 (792)
.+..+.+|...|++++.+|+++ +++++++. ..|++|+..+-..+..+.+ .++.++|+|++.+|
T Consensus 509 Lq~~tLwPEv~KLYGHGyEv~~l~~s~~gn-liASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~L 587 (764)
T KOG1063|consen 509 LQQNTLWPEVHKLYGHGYEVYALAISPTGN-LIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYL 587 (764)
T ss_pred HHHhccchhhHHhccCceeEEEEEecCCCC-EEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEE
Confidence 0223448999999999999975 77777664 4699999988776665554 46779999999999
Q ss_pred EEEEcCCeEEEEECCCCe-E---EEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEE--EeecCCCc
Q 003840 653 LAAAAENVVSILDAETQA-C---RLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVH--ELSCNGNK 725 (792)
Q Consensus 653 la~s~dg~I~i~D~~t~~-~---~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~--~~~~~~~~ 725 (792)
++++.|.++.+|...... . ....+.|..-|.+..|+|++.+|++++.| +|+||....... +++. ........
T Consensus 588 LsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d-~~i~~~a~~~~~~a 666 (764)
T KOG1063|consen 588 LSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRD-KYISRFACLKFSLA 666 (764)
T ss_pred EEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchh-hhhhhhchhccCCc
Confidence 999999999999875431 1 22367799999999999999999999999 999999976532 2222 33345678
Q ss_pred eEEEEEeCC-----CCEEEEEEcCCeEEEEECC------CCcEE-------EEcccCCCeEEEEEeCC--------C--C
Q 003840 726 FHSCVFHPT-----YPSLLVIGCYQSLELWNMS------ENKTM-------TLTAHEGLIAALAVSTE--------T--G 777 (792)
Q Consensus 726 i~si~fspd-----g~~L~sgs~dg~I~IwDl~------~~~~~-------~~~~h~~~V~sl~fspd--------g--~ 777 (792)
|+.++|.|- +..+++|-..|.|.+|... +.... ....|...|+.+.|.|. . .
T Consensus 667 VTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l 746 (764)
T KOG1063|consen 667 VTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPTCSDDWVEDKEWL 746 (764)
T ss_pred eeeEEeeccccccccceEEEEecccEEEEEecccccccccceeeeeccccccccChHHhhheeEecccccccccccccee
Confidence 899888772 2367788888999999965 11111 23457788999999964 2 2
Q ss_pred EEEEEeCCCcEEEeC
Q 003840 778 YVASASHDKFVKLWK 792 (792)
Q Consensus 778 ~LaSgs~DG~I~IWd 792 (792)
.|++|++|..++|++
T Consensus 747 ~la~~g~D~~vri~n 761 (764)
T KOG1063|consen 747 NLAVGGDDESVRIFN 761 (764)
T ss_pred EEeeecccceeEEee
Confidence 479999999999985
No 136
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.87 E-value=3.4e-21 Score=203.58 Aligned_cols=216 Identities=19% Similarity=0.383 Sum_probs=180.5
Q ss_pred ceeeeeeeecCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEECCCC-------ceeEEeccCCCCEEEEEECC-CCCeEEE
Q 003840 501 SFKEANSVRASTSKVICCHFSSDG-KLLATGGHDKKAVLWHTDTL-------KSKTNLEEHSSLITDVRFSP-SMPRLAT 571 (792)
Q Consensus 501 ~~~~~~~l~~H~~~V~~lafspdg-~~Lasgs~Dg~I~vWdl~t~-------~~~~~l~~h~~~V~~i~fsp-dg~~Las 571 (792)
.+.+-.+|++|.+.-+.++|++.. -+|++|+.|+.|++||+... .....+.+|...|.+++|++ +..+|++
T Consensus 166 ~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~s 245 (422)
T KOG0264|consen 166 ECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGS 245 (422)
T ss_pred cCCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhhee
Confidence 334455899999988999999943 48999999999999998643 23566789999999999999 5568999
Q ss_pred EeCCCcEEEEeCCC-CCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCCeeEEEEecCCC
Q 003840 572 SSFDKTVRVWDADN-PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLG 650 (792)
Q Consensus 572 gs~Dg~V~IWdl~s-~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~ 650 (792)
++.|+.+.|||+++ ..++.....+|.+.|.|++|+|.+.++||+|+.|++|++||+++.+
T Consensus 246 v~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~------------------- 306 (422)
T KOG0264|consen 246 VGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLN------------------- 306 (422)
T ss_pred ecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcc-------------------
Confidence 99999999999996 3566777889999999999999999999999999999999998542
Q ss_pred EEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCC-CEEEEEeCC-eEEEEECCCCC-----------CcceEE
Q 003840 651 RYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSG-ELLASVSED-SVRVWTVGSGS-----------EGECVH 717 (792)
Q Consensus 651 ~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg-~~Las~s~d-~I~IwDl~s~~-----------~~~~i~ 717 (792)
+++.++.+|...|.+|.|+|.. .+|++++.| .+.|||+..-. ..+.+.
T Consensus 307 -------------------~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF 367 (422)
T KOG0264|consen 307 -------------------KPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLF 367 (422)
T ss_pred -------------------cCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeE
Confidence 3566788899999999999965 478888888 99999996532 234567
Q ss_pred EeecCCCceEEEEEeCCCCE-EEEEEcCCeEEEEECCC
Q 003840 718 ELSCNGNKFHSCVFHPTYPS-LLVIGCYQSLELWNMSE 754 (792)
Q Consensus 718 ~~~~~~~~i~si~fspdg~~-L~sgs~dg~I~IwDl~~ 754 (792)
...+|...|..+.|+|...+ |++++.|+.+.||.+..
T Consensus 368 ~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 368 IHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred EecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 77789999999999999886 55667789999999864
No 137
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.87 E-value=1.1e-20 Score=199.24 Aligned_cols=292 Identities=18% Similarity=0.292 Sum_probs=214.4
Q ss_pred CcceeeeeeeecCCCCeEEEEEcCCC--CEEEEEeCCCeEEEEECCC----CceeEEeccCCCCEEEEEECCC-CCeEEE
Q 003840 499 GFSFKEANSVRASTSKVICCHFSSDG--KLLATGGHDKKAVLWHTDT----LKSKTNLEEHSSLITDVRFSPS-MPRLAT 571 (792)
Q Consensus 499 ~~~~~~~~~l~~H~~~V~~lafspdg--~~Lasgs~Dg~I~vWdl~t----~~~~~~l~~h~~~V~~i~fspd-g~~Las 571 (792)
...+.....++-+.+.|+|++|+|.. +++|+|...|.|-+||+.+ ...+..+..|...|.+|.|+|. ...|++
T Consensus 173 l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~s 252 (498)
T KOG4328|consen 173 LDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYS 252 (498)
T ss_pred cccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheee
Confidence 44556777888999999999999955 5889999999999999952 3345667789999999999995 458999
Q ss_pred EeCCCcEEEEeCCCCC-ceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCee----EEEeeCCeeEEEEe
Q 003840 572 SSFDKTVRVWDADNPG-YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC----TRVFKGGTAQMRFQ 646 (792)
Q Consensus 572 gs~Dg~V~IWdl~s~~-~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~----~~~~~~~~~~v~~s 646 (792)
.++||+|++-|++..- ..+..+......+.++.|+.+...++ .++.=|.+.+||++++.. ++..+..+..++++
T Consensus 253 sSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl-~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~N 331 (498)
T KOG4328|consen 253 SSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVL-FGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALN 331 (498)
T ss_pred eccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEE-EeecccceEEEEeecCCccchhhhhhhcccceeecC
Confidence 9999999999998622 12223333455677888887766555 666666999999998654 23345578889999
Q ss_pred cCCCEEE-EEEcCCeEEEEECCCCe----EEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCC-CCcceEEEe
Q 003840 647 PHLGRYL-AAAAENVVSILDAETQA----CRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSG-SEGECVHEL 719 (792)
Q Consensus 647 p~~~~ll-a~s~dg~I~i~D~~t~~----~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~-~~~~~i~~~ 719 (792)
|-..+++ +++.|++++|||++... +......|...|.+++|+|++-.|++.+.| .|+|||..-. ........+
T Consensus 332 P~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I 411 (498)
T KOG4328|consen 332 PVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTI 411 (498)
T ss_pred CCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCcccee
Confidence 9887654 56669999999998642 234455699999999999987778888877 9999998411 111222222
Q ss_pred e---cCCCc--eEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccC-CCeEE-EEEeCCCCEEEE-EeCCCcEEE
Q 003840 720 S---CNGNK--FHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHE-GLIAA-LAVSTETGYVAS-ASHDKFVKL 790 (792)
Q Consensus 720 ~---~~~~~--i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~~~~h~-~~V~s-l~fspdg~~LaS-gs~DG~I~I 790 (792)
. .+... ....+|.|+..+|++|..-..|-|||-..++.+ .+.... ..|.+ ..|+|-+..+++ ++..|.|+|
T Consensus 412 ~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~v 491 (498)
T KOG4328|consen 412 PHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYV 491 (498)
T ss_pred eccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEE
Confidence 1 11122 345689999999999999999999999988855 333322 24444 478998874544 455788988
Q ss_pred e
Q 003840 791 W 791 (792)
Q Consensus 791 W 791 (792)
|
T Consensus 492 f 492 (498)
T KOG4328|consen 492 F 492 (498)
T ss_pred E
Confidence 8
No 138
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.87 E-value=3.3e-20 Score=187.51 Aligned_cols=224 Identities=18% Similarity=0.307 Sum_probs=184.0
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCce
Q 003840 510 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYS 589 (792)
Q Consensus 510 ~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~ 589 (792)
.|..++.+++|.++ ..+++|+.||.|+++|+.++.. ..+..|...|.||.+++....+++|++|++|++||.+. ...
T Consensus 52 ~~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~~~-~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~-~~~ 128 (323)
T KOG1036|consen 52 KHGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTGNE-DQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRN-KVV 128 (323)
T ss_pred ecCCceeeeeccCC-ceEEEeccCceEEEEEecCCcc-eeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccc-ccc
Confidence 57889999999884 4789999999999999998764 45667999999999999888999999999999999986 333
Q ss_pred eEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEE-----EeeCCeeEEEEecCCCEEEEEEcCCeEEEE
Q 003840 590 LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR-----VFKGGTAQMRFQPHLGRYLAAAAENVVSIL 664 (792)
Q Consensus 590 i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~-----~~~~~~~~v~~sp~~~~lla~s~dg~I~i~ 664 (792)
...+. ....|.++.... + .|++|+.|..|.+||+++..... .++-.+.++++.|++.-+++++-||.|.+=
T Consensus 129 ~~~~d-~~kkVy~~~v~g--~-~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE 204 (323)
T KOG1036|consen 129 VGTFD-QGKKVYCMDVSG--N-RLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVE 204 (323)
T ss_pred ccccc-cCceEEEEeccC--C-EEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEE
Confidence 44443 334788988873 3 45588889999999999865432 356678899999998999999999999887
Q ss_pred ECCCC----eEEEEecCCCC---------CeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEE
Q 003840 665 DAETQ----ACRLSLQGHTK---------PIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCV 730 (792)
Q Consensus 665 D~~t~----~~~~~l~~h~~---------~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~ 730 (792)
.++.. +..+.|+.|.. +|++|+|+|-...|++|+.| .|.+||+.+. +.+..+......|.+++
T Consensus 205 ~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~r---Krl~q~~~~~~SI~sls 281 (323)
T KOG1036|consen 205 YFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNR---KRLKQLAKYETSISSLS 281 (323)
T ss_pred ccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcch---hhhhhccCCCCceEEEE
Confidence 77665 55666776643 69999999999999999999 9999999765 55666666667899999
Q ss_pred EeCCCCEEEEEEc
Q 003840 731 FHPTYPSLLVIGC 743 (792)
Q Consensus 731 fspdg~~L~sgs~ 743 (792)
|+.+|..||++++
T Consensus 282 fs~dG~~LAia~s 294 (323)
T KOG1036|consen 282 FSMDGSLLAIASS 294 (323)
T ss_pred eccCCCeEEEEec
Confidence 9999999999976
No 139
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.87 E-value=1.4e-20 Score=194.02 Aligned_cols=246 Identities=22% Similarity=0.428 Sum_probs=195.3
Q ss_pred eecCCCCeEEEEEcCCC--CEEEEEeCCCeEEEEECC----------------CCceeEEeccCCCCEEEEEECCC-CCe
Q 003840 508 VRASTSKVICCHFSSDG--KLLATGGHDKKAVLWHTD----------------TLKSKTNLEEHSSLITDVRFSPS-MPR 568 (792)
Q Consensus 508 l~~H~~~V~~lafspdg--~~Lasgs~Dg~I~vWdl~----------------t~~~~~~l~~h~~~V~~i~fspd-g~~ 568 (792)
.-.|.+.|..+..++-| .+.|+-+..|.|.|||+. ..+.+.++.+|...=+.|+|+|- ...
T Consensus 147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~ 226 (440)
T KOG0302|consen 147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGR 226 (440)
T ss_pred ccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccc
Confidence 34677778887777754 466666788999999974 24567888899999999999993 236
Q ss_pred EEEEeCCCcEEEEeCCCCCcee--EEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCCeeEEEEe
Q 003840 569 LATSSFDKTVRVWDADNPGYSL--RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQ 646 (792)
Q Consensus 569 Lasgs~Dg~V~IWdl~s~~~~i--~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~s 646 (792)
|++|..-+.|++|...++...+ ..|.+|...|..|+|+|..+.+|++|+.||+|+|||++.+...
T Consensus 227 LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~------------- 293 (440)
T KOG0302|consen 227 LLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKK------------- 293 (440)
T ss_pred cccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCcc-------------
Confidence 8888888899999998855443 4566899999999999999999999999999999999976321
Q ss_pred cCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCc
Q 003840 647 PHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNK 725 (792)
Q Consensus 647 p~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~ 725 (792)
.++ ..+.|.+.|+.|.|+.+..+||+|++| +++|||++..+...++..++-|..+
T Consensus 294 -----------------------~~~-~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~p 349 (440)
T KOG0302|consen 294 -----------------------AAV-STKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAP 349 (440)
T ss_pred -----------------------cee-EeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCC
Confidence 111 125688999999999988899999999 9999999998878899999999999
Q ss_pred eEEEEEeCCC-CEEEEEEcCCeEEEEECCCCcE-----------------EEEccc--CCCeEEEEEeCC-CCEEEEEeC
Q 003840 726 FHSCVFHPTY-PSLLVIGCYQSLELWNMSENKT-----------------MTLTAH--EGLIAALAVSTE-TGYVASASH 784 (792)
Q Consensus 726 i~si~fspdg-~~L~sgs~dg~I~IwDl~~~~~-----------------~~~~~h--~~~V~sl~fspd-g~~LaSgs~ 784 (792)
|+++.|+|.. ..|++++.|..|.|||+.-..- -.+..| ...|..+.|++. -.+|++.+.
T Consensus 350 ItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~ 429 (440)
T KOG0302|consen 350 ITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAI 429 (440)
T ss_pred eeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecc
Confidence 9999999954 5788889999999999854221 022234 446888899874 357888888
Q ss_pred CCcEEEe
Q 003840 785 DKFVKLW 791 (792)
Q Consensus 785 DG~I~IW 791 (792)
|| +.||
T Consensus 430 dG-fnVf 435 (440)
T KOG0302|consen 430 DG-FNVF 435 (440)
T ss_pred cc-eeEE
Confidence 88 4444
No 140
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.87 E-value=1.9e-20 Score=190.22 Aligned_cols=289 Identities=19% Similarity=0.339 Sum_probs=219.3
Q ss_pred cceeeeeee-ecCCCCeEEEEEcC----C-CCEEEEEeCCCeEEEEECCCCc---eeEEec--cCCCCEEEEEECCC---
Q 003840 500 FSFKEANSV-RASTSKVICCHFSS----D-GKLLATGGHDKKAVLWHTDTLK---SKTNLE--EHSSLITDVRFSPS--- 565 (792)
Q Consensus 500 ~~~~~~~~l-~~H~~~V~~lafsp----d-g~~Lasgs~Dg~I~vWdl~t~~---~~~~l~--~h~~~V~~i~fspd--- 565 (792)
.+|+....+ ..|+.+|..++|++ + -..+|+++ ...|.+|...... .+..+. .|......++|+-+
T Consensus 25 ~~yk~t~~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG-~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~ 103 (385)
T KOG1034|consen 25 RSYKYTNHLKEDHNKPIFGVAFNSFLGCDEPQVFATVG-GNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNT 103 (385)
T ss_pred cceEeeeehhccCCCccceeeeehhcCCCCCceEEEeC-CcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCC
Confidence 344554444 57889999999985 2 23556655 4578888875432 222222 37777888889764
Q ss_pred -CCeEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee------C
Q 003840 566 -MPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK------G 638 (792)
Q Consensus 566 -g~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~------~ 638 (792)
..+||+|+.-|.|+|.|+.+ +.+...+.+|...|+.|.|+|+...|++++++|..||+|++.+..|+..|. .
T Consensus 104 ~~p~la~~G~~GvIrVid~~~-~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrd 182 (385)
T KOG1034|consen 104 GNPFLAAGGYLGVIRVIDVVS-GQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRD 182 (385)
T ss_pred CCeeEEeecceeEEEEEecch-hhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccC
Confidence 34899999999999999998 788889999999999999999999999999999999999999999999874 3
Q ss_pred CeeEEEEecCCCEEEEEEcCCeEEEEECCCCeE------E---------------------E-EecCCCCCeEEEEEcCC
Q 003840 639 GTAQMRFQPHLGRYLAAAAENVVSILDAETQAC------R---------------------L-SLQGHTKPIDSVCWDPS 690 (792)
Q Consensus 639 ~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~------~---------------------~-~l~~h~~~V~sv~~spd 690 (792)
.+.++.|+.++.++++++.|..|.+|++...+. . + +-..|...|.|+.|-
T Consensus 183 eVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~-- 260 (385)
T KOG1034|consen 183 EVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF-- 260 (385)
T ss_pred cEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--
Confidence 678899999999999999999999999973211 1 0 112356666677665
Q ss_pred CCEEEEEeCC-eEEEEECCCC-----------CCcceEEEeecCCCceEEE--EEeCCCCEEEEEEcCCeEEEEECCCCc
Q 003840 691 GELLASVSED-SVRVWTVGSG-----------SEGECVHELSCNGNKFHSC--VFHPTYPSLLVIGCYQSLELWNMSENK 756 (792)
Q Consensus 691 g~~Las~s~d-~I~IwDl~s~-----------~~~~~i~~~~~~~~~i~si--~fspdg~~L~sgs~dg~I~IwDl~~~~ 756 (792)
|+++++-+-+ .|..|..... .....+.++......|+-+ +|.+-.+.|+.|...|.|++||++..+
T Consensus 261 gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~e 340 (385)
T KOG1034|consen 261 GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNE 340 (385)
T ss_pred hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCC
Confidence 5778887666 9999987211 1122334444444445444 566778999999999999999998876
Q ss_pred EE---E--EcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003840 757 TM---T--LTAHEGLIAALAVSTETGYVASASHDKFVKLWK 792 (792)
Q Consensus 757 ~~---~--~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd 792 (792)
.. + .......|...+|+.|+.+|+..++|++|.-||
T Consensus 341 p~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwd 381 (385)
T KOG1034|consen 341 PPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWD 381 (385)
T ss_pred CccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEE
Confidence 53 2 223456789999999999999999999999886
No 141
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=1.9e-21 Score=224.78 Aligned_cols=242 Identities=19% Similarity=0.367 Sum_probs=201.0
Q ss_pred CCCeEEEEEcCCCCE----EEEEeCCCeEEEEECCCC------ceeEEeccCCCCEEEEEECCCCC-eEEEEeCCCcEEE
Q 003840 512 TSKVICCHFSSDGKL----LATGGHDKKAVLWHTDTL------KSKTNLEEHSSLITDVRFSPSMP-RLATSSFDKTVRV 580 (792)
Q Consensus 512 ~~~V~~lafspdg~~----Lasgs~Dg~I~vWdl~t~------~~~~~l~~h~~~V~~i~fspdg~-~Lasgs~Dg~V~I 580 (792)
..+.++++|.+.|.. ||.|..||.|.+||.... ..+.++..|.+.|..+.|++... +||+|+.||.|.|
T Consensus 64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~i 143 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILI 143 (1049)
T ss_pred cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEE
Confidence 345788999987765 899999999999998652 34566778999999999999765 9999999999999
Q ss_pred EeCCCCCceeEE-ecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeC-----CeeEEEEecCCCE-EE
Q 003840 581 WDADNPGYSLRT-FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG-----GTAQMRFQPHLGR-YL 653 (792)
Q Consensus 581 Wdl~s~~~~i~~-~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~-----~~~~v~~sp~~~~-ll 653 (792)
||+.+....... -....+.|.+|+|+..-.++|++++.+|.+.|||++..+.+-.+.. +...+.|+|+... ++
T Consensus 144 WDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~ 223 (1049)
T KOG0307|consen 144 WDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLL 223 (1049)
T ss_pred eccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeee
Confidence 999874433322 1235678999999988889999999999999999999877665543 3557999999865 55
Q ss_pred EEEcCC---eEEEEECCCC-eEEEEecCCCCCeEEEEEcCCC-CEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceE
Q 003840 654 AAAAEN---VVSILDAETQ-ACRLSLQGHTKPIDSVCWDPSG-ELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFH 727 (792)
Q Consensus 654 a~s~dg---~I~i~D~~t~-~~~~~l~~h~~~V~sv~~spdg-~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~ 727 (792)
+++.|. .|.+||+|.. .++.++.+|...|.++.|++.+ ++|++++.| .|.+|+.+++ +.+..+....+++.
T Consensus 224 ~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tg---Evl~~~p~~~nW~f 300 (1049)
T KOG0307|consen 224 VASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTG---EVLGELPAQGNWCF 300 (1049)
T ss_pred eecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCc---eEeeecCCCCccee
Confidence 555543 8999999875 6777888999999999999966 799999999 9999999887 88888888899999
Q ss_pred EEEEeCCCC-EEEEEEcCCeEEEEECCCCc
Q 003840 728 SCVFHPTYP-SLLVIGCYQSLELWNMSENK 756 (792)
Q Consensus 728 si~fspdg~-~L~sgs~dg~I~IwDl~~~~ 756 (792)
.+.|+|... .|++.+-||.|.||.+.+..
T Consensus 301 dv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 301 DVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred eeeecCCCcchhhhheeccceeeeeeecCC
Confidence 999999876 77888899999999987665
No 142
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.86 E-value=1.1e-20 Score=199.98 Aligned_cols=279 Identities=17% Similarity=0.223 Sum_probs=208.8
Q ss_pred CcceeccCCcceeeeeeeecCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEECCC--CceeEEeccCCCCEEEEEECCCCC
Q 003840 491 GRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGK-LLATGGHDKKAVLWHTDT--LKSKTNLEEHSSLITDVRFSPSMP 567 (792)
Q Consensus 491 ~~~~d~~~~~~~~~~~~l~~H~~~V~~lafspdg~-~Lasgs~Dg~I~vWdl~t--~~~~~~l~~h~~~V~~i~fspdg~ 567 (792)
.++||+.......++....... .|..++|+.... .+|+.+.|..|++|.-.. ++....-+.....-.|++......
T Consensus 14 ~kl~D~s~~~~~~~~~~~t~~p-g~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~S~ 92 (673)
T KOG4378|consen 14 TKLSDFSDLETKSEYVHQTAEP-GDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQSL 92 (673)
T ss_pred eEEeecccccCccccccCCCCC-cceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhhcce
Confidence 4455555443333333333222 389999998764 233445788899997442 222222222222334444444457
Q ss_pred eEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCC----eeEE
Q 003840 568 RLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG----TAQM 643 (792)
Q Consensus 568 ~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~----~~~v 643 (792)
|+++|+..+.|+|||+.. +.+.+.+++|...|+++.|+..+ .+|++++..|.|.|..+.++.....|..+ +.-+
T Consensus 93 y~~sgG~~~~Vkiwdl~~-kl~hr~lkdh~stvt~v~YN~~D-eyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll 170 (673)
T KOG4378|consen 93 YEISGGQSGCVKIWDLRA-KLIHRFLKDHQSTVTYVDYNNTD-EYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLL 170 (673)
T ss_pred eeeccCcCceeeehhhHH-HHHhhhccCCcceeEEEEecCCc-ceeEEeccCCcEEEEecccCccccceecCCCCeEEEe
Confidence 999999999999999995 78889999999999999998775 46779999999999999998877777643 3457
Q ss_pred EEecCCCEEEE-EEcCCeEEEEECCCCeEEEEe-cCCCCCeEEEEEcCCC-CEEEEEeCC-eEEEEECCCCCCcceEEEe
Q 003840 644 RFQPHLGRYLA-AAAENVVSILDAETQACRLSL-QGHTKPIDSVCWDPSG-ELLASVSED-SVRVWTVGSGSEGECVHEL 719 (792)
Q Consensus 644 ~~sp~~~~lla-~s~dg~I~i~D~~t~~~~~~l-~~h~~~V~sv~~spdg-~~Las~s~d-~I~IwDl~s~~~~~~i~~~ 719 (792)
.|++....++. ++.+|.|.+||+....+++.+ +.|..+...|||+|.. .+|++.+.| .|.+||++......++.
T Consensus 171 ~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~-- 248 (673)
T KOG4378|consen 171 RYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT-- 248 (673)
T ss_pred ecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceee--
Confidence 88988877664 566899999999988777665 4599999999999955 578888999 99999998653333332
Q ss_pred ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcE-E-EEcccCCCeEEEEEeCCC
Q 003840 720 SCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKT-M-TLTAHEGLIAALAVSTET 776 (792)
Q Consensus 720 ~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~-~-~~~~h~~~V~sl~fspdg 776 (792)
...++..++|.++|.+|++|...|.|..||++..+. + .+.+|...|++++|-+.-
T Consensus 249 --y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 249 --YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred --ecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 356889999999999999999999999999987653 3 677999999999997754
No 143
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=1.8e-20 Score=197.17 Aligned_cols=242 Identities=22% Similarity=0.417 Sum_probs=191.4
Q ss_pred eEEEEEcC-------CCCEEEEEeCCCeEEEEECCCC---ceeEE------------------eccCCCCEEEEEECCCC
Q 003840 515 VICCHFSS-------DGKLLATGGHDKKAVLWHTDTL---KSKTN------------------LEEHSSLITDVRFSPSM 566 (792)
Q Consensus 515 V~~lafsp-------dg~~Lasgs~Dg~I~vWdl~t~---~~~~~------------------l~~h~~~V~~i~fspdg 566 (792)
..|++|.. -|+|+|.|+.|..|.|||++-. .+..+ -.+|+..|.+++|+.+-
T Consensus 176 PLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~ 255 (463)
T KOG0270|consen 176 PLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNF 255 (463)
T ss_pred chhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhcccc
Confidence 36777753 3679999999999999998521 11111 22688999999998854
Q ss_pred -CeEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCC---CeeEEEeeCCeeE
Q 003840 567 -PRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN---GSCTRVFKGGTAQ 642 (792)
Q Consensus 567 -~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~---~~~~~~~~~~~~~ 642 (792)
..||+||.|.+|++||+.+ +++..++..|...|.++.|+|....++++|+.|++|.+.|++. ......+.+.+..
T Consensus 256 ~nVLaSgsaD~TV~lWD~~~-g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEk 334 (463)
T KOG0270|consen 256 RNVLASGSADKTVKLWDVDT-GKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEK 334 (463)
T ss_pred ceeEEecCCCceEEEEEcCC-CCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEE
Confidence 4899999999999999998 8888999999999999999999999999999999999999994 3344567889999
Q ss_pred EEEecCCCE-EEEEEcCCeEEEEECCCC-eEEEEecCCCCCeEEEEEcCCC-CEEEEEeCC-eEEEEECCCCCCcceEEE
Q 003840 643 MRFQPHLGR-YLAAAAENVVSILDAETQ-ACRLSLQGHTKPIDSVCWDPSG-ELLASVSED-SVRVWTVGSGSEGECVHE 718 (792)
Q Consensus 643 v~~sp~~~~-lla~s~dg~I~i~D~~t~-~~~~~l~~h~~~V~sv~~spdg-~~Las~s~d-~I~IwDl~s~~~~~~i~~ 718 (792)
+.|.+.... +++++.||.|+-+|+|.. ++++++..|..+|.+|+++..- .++++++.+ .|++|++..... +.+..
T Consensus 335 v~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~-~~v~~ 413 (463)
T KOG0270|consen 335 VAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSP-KSVKE 413 (463)
T ss_pred EEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCC-ccccc
Confidence 999998765 556667999999999986 9999999999999999999854 477888888 999999965322 23322
Q ss_pred eecCCCceEEEEEeCCCCE-EEEEEcCCeEEEEECCCCcEE
Q 003840 719 LSCNGNKFHSCVFHPTYPS-LLVIGCYQSLELWNMSENKTM 758 (792)
Q Consensus 719 ~~~~~~~i~si~fspdg~~-L~sgs~dg~I~IwDl~~~~~~ 758 (792)
....-+...|+++.|+-.+ +++|+..+.++|||+.+...+
T Consensus 414 ~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 414 HSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred ccccccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence 2222334667778887654 556666678999999877644
No 144
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=3.4e-21 Score=213.93 Aligned_cols=236 Identities=19% Similarity=0.316 Sum_probs=193.4
Q ss_pred eEEEEEcC-CCCEEEEEeCCCeEEEEECCC---CceeEEeccCCCCEEEEEECCC-CCeEEEEeCCCcEEEEeCCCCCce
Q 003840 515 VICCHFSS-DGKLLATGGHDKKAVLWHTDT---LKSKTNLEEHSSLITDVRFSPS-MPRLATSSFDKTVRVWDADNPGYS 589 (792)
Q Consensus 515 V~~lafsp-dg~~Lasgs~Dg~I~vWdl~t---~~~~~~l~~h~~~V~~i~fspd-g~~Lasgs~Dg~V~IWdl~s~~~~ 589 (792)
+..+.|.. +.++|||++..|.|.+||+.. .+.+..|..|...|+++.|++. ..+|++|+.||+|++||++. ...
T Consensus 90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~-~~S 168 (839)
T KOG0269|consen 90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRS-KKS 168 (839)
T ss_pred hhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeec-ccc
Confidence 34566664 567999999999999999987 5666788899999999999984 55899999999999999998 566
Q ss_pred eEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCe-eE---EEeeCCeeEEEEecCCCEEEEEEcCCeEEEEE
Q 003840 590 LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS-CT---RVFKGGTAQMRFQPHLGRYLAAAAENVVSILD 665 (792)
Q Consensus 590 i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~-~~---~~~~~~~~~v~~sp~~~~lla~s~dg~I~i~D 665 (792)
..++.+....|.++.|+|...+.|+++.+.|.+.+||++... +. ..+.+.+.++.|+|+..+|++|+.|+.|+|||
T Consensus 169 ~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd 248 (839)
T KOG0269|consen 169 KSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWD 248 (839)
T ss_pred cccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEe
Confidence 777778889999999999988999999999999999998753 33 23567899999999999999999999999999
Q ss_pred CCCCeE--EEEecCCCCCeEEEEEcCCCC-EEEEEeC--C-eEEEEECCCCCCcceEEEeecCCCceEEEEEeC-CCCEE
Q 003840 666 AETQAC--RLSLQGHTKPIDSVCWDPSGE-LLASVSE--D-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHP-TYPSL 738 (792)
Q Consensus 666 ~~t~~~--~~~l~~h~~~V~sv~~spdg~-~Las~s~--d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fsp-dg~~L 738 (792)
..+.+. +.++. ...+|.+|.|-|+.. .|++++. | .|+|||++. ...+...+..|...++.++|.. |...+
T Consensus 249 ~t~~~~~~~~tIn-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrR--PYIP~~t~~eH~~~vt~i~W~~~d~~~l 325 (839)
T KOG0269|consen 249 MTDSRAKPKHTIN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRR--PYIPYATFLEHTDSVTGIAWDSGDRINL 325 (839)
T ss_pred ccCCCccceeEEe-ecceeeeeeeccCccchhhhhhccccceEEEEeecc--ccccceeeeccCccccceeccCCCceee
Confidence 986543 33333 457899999999766 5666653 4 899999984 4567788999999999999976 45567
Q ss_pred EEEEcCCeEEEEECCC
Q 003840 739 LVIGCYQSLELWNMSE 754 (792)
Q Consensus 739 ~sgs~dg~I~IwDl~~ 754 (792)
.+++.|+.|..-.+++
T Consensus 326 ~s~sKD~tv~qh~~kn 341 (839)
T KOG0269|consen 326 WSCSKDGTVLQHLFKN 341 (839)
T ss_pred EeecCccHHHHhhhhc
Confidence 7888888776555444
No 145
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.86 E-value=1.2e-17 Score=183.29 Aligned_cols=347 Identities=29% Similarity=0.489 Sum_probs=255.9
Q ss_pred ceEEEEeCCCeeeecC---CCeeEeCCCcc-hhhcccccccCCCCCCceeee-c-cCCCC------CCCCCCCcceeccC
Q 003840 431 PLMMFGTDGAGTLTSP---SNQLWDDKDLE-LRADMDRLVEDGSLDDNVESF-L-SHDDT------DPRDAGGRGMDVSQ 498 (792)
Q Consensus 431 ~~l~~s~Dg~~~~ss~---s~~lWD~~tg~-~~~~~~~~~~~g~~d~~v~~~-l-~~d~~------~~~d~~~~~~d~~~ 498 (792)
..+.+.+++..++..+ ...+|+...+. ....+..... ..+... + ..+.. ...+....+|+...
T Consensus 69 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 143 (466)
T COG2319 69 TSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHD-----SSVSKLALSSPDGNSILLASSSLDGTVKLWDLST 143 (466)
T ss_pred EEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCC-----CceeeEEEECCCcceEEeccCCCCccEEEEEecC
Confidence 3456666777666544 33789988775 2222222111 011111 1 11111 12244566666654
Q ss_pred CcceeeeeeeecCCCCeEEEEEcCCCCEEEEEeC-CCeEEEEECCCCceeEEeccCCCCEEEEEECCCCC-eEEEEeCCC
Q 003840 499 GFSFKEANSVRASTSKVICCHFSSDGKLLATGGH-DKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP-RLATSSFDK 576 (792)
Q Consensus 499 ~~~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~-Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~-~Lasgs~Dg 576 (792)
.+.....+..|...|.+++|+++++++++++. |+.+++|++..++.+..+.+|...|.+++|+|++. ++++++.|+
T Consensus 144 --~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~ 221 (466)
T COG2319 144 --PGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDG 221 (466)
T ss_pred --CCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCC
Confidence 35678889999999999999999999999885 99999999999999999999999999999999998 555559999
Q ss_pred cEEEEeCCCCCceeE-EecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCee-EEEe---eCCeeEEEEecCCCE
Q 003840 577 TVRVWDADNPGYSLR-TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC-TRVF---KGGTAQMRFQPHLGR 651 (792)
Q Consensus 577 ~V~IWdl~s~~~~i~-~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~-~~~~---~~~~~~v~~sp~~~~ 651 (792)
.|++||... +..+. .+.+|...+ ...|++++ .++++++.|+.+++|++..... +..+ ...+.++.|.|++..
T Consensus 222 ~i~~wd~~~-~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 298 (466)
T COG2319 222 TIRLWDLST-GKLLRSTLSGHSDSV-VSSFSPDG-SLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKL 298 (466)
T ss_pred cEEEEECCC-CcEEeeecCCCCcce-eEeECCCC-CEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCE
Confidence 999998885 55555 688888875 44899998 4666999999999999987664 4444 346677889998888
Q ss_pred EEEEEcCCeEEEEECCCCeEEEEec--CCCCCeEEEEEcCCCCEEEEE-eCC-eEEEEECCCCCCcceEEEeecCCCceE
Q 003840 652 YLAAAAENVVSILDAETQACRLSLQ--GHTKPIDSVCWDPSGELLASV-SED-SVRVWTVGSGSEGECVHELSCNGNKFH 727 (792)
Q Consensus 652 lla~s~dg~I~i~D~~t~~~~~~l~--~h~~~V~sv~~spdg~~Las~-s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~ 727 (792)
+++++.|+.+.+||..+........ .|...+..+.|.+++..++.+ ..| .+.+|++.... ......... .+.
T Consensus 299 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~---~~~~~~~~~-~~~ 374 (466)
T COG2319 299 LASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK---PLKTLEGHS-NVL 374 (466)
T ss_pred EEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc---eeEEecCCc-eEE
Confidence 8888889889999999887766665 788889999994332555555 456 78889998763 222222222 278
Q ss_pred EEEEeCCCCEEEE-EEcCCeEEEEECCCCcEEEEcccC-CCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003840 728 SCVFHPTYPSLLV-IGCYQSLELWNMSENKTMTLTAHE-GLIAALAVSTETGYVASASHDKFVKLWK 792 (792)
Q Consensus 728 si~fspdg~~L~s-gs~dg~I~IwDl~~~~~~~~~~h~-~~V~sl~fspdg~~LaSgs~DG~I~IWd 792 (792)
.+.+.+ ...++. +..++.+.+|+............. ..+..+.+++++.++++++.++.+++|+
T Consensus 375 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (466)
T COG2319 375 SVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWD 440 (466)
T ss_pred EEEECC-CCCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCCcEEEEe
Confidence 888888 533443 578899999999998887555544 8899999999999999999999999995
No 146
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=5.4e-20 Score=194.09 Aligned_cols=247 Identities=16% Similarity=0.220 Sum_probs=200.1
Q ss_pred eeeeeecCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCCceeEE--eccCC-CCEEEEEECCCCCeEEEEeCCCcEE
Q 003840 504 EANSVRASTSKVICCHFSSDGK-LLATGGHDKKAVLWHTDTLKSKTN--LEEHS-SLITDVRFSPSMPRLATSSFDKTVR 579 (792)
Q Consensus 504 ~~~~l~~H~~~V~~lafspdg~-~Lasgs~Dg~I~vWdl~t~~~~~~--l~~h~-~~V~~i~fspdg~~Lasgs~Dg~V~ 579 (792)
.+..+.-...+|.+++|.|+|. .+++++....++.||+.+.+..+. +.++. ..+.....++++++|+..+..|.|.
T Consensus 249 ~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~ 328 (514)
T KOG2055|consen 249 KLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIH 328 (514)
T ss_pred hheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEE
Confidence 4555666678899999999999 999999999999999998765443 33433 4577888899999999999999999
Q ss_pred EEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeC----CeeEEEEecCCCEEEEE
Q 003840 580 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG----GTAQMRFQPHLGRYLAA 655 (792)
Q Consensus 580 IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~----~~~~v~~sp~~~~lla~ 655 (792)
|....+ +..+..++ -.+.|.+++|+.+++.++ +++.+|.|++||++...|++.+.. +.+.++.+.++.++++|
T Consensus 329 lLhakT-~eli~s~K-ieG~v~~~~fsSdsk~l~-~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~G 405 (514)
T KOG2055|consen 329 LLHAKT-KELITSFK-IEGVVSDFTFSSDSKELL-ASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATG 405 (514)
T ss_pred eehhhh-hhhhheee-eccEEeeEEEecCCcEEE-EEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEec
Confidence 998887 56666665 567899999999987666 555689999999999999998853 35668889999999999
Q ss_pred EcCCeEEEEECCC------CeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC---eEEEEECCCCCCcceEEEeecCCCce
Q 003840 656 AAENVVSILDAET------QACRLSLQGHTKPIDSVCWDPSGELLASVSED---SVRVWTVGSGSEGECVHELSCNGNKF 726 (792)
Q Consensus 656 s~dg~I~i~D~~t------~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d---~I~IwDl~s~~~~~~i~~~~~~~~~i 726 (792)
+..|.|.|||.++ .+++..+..-...|+++.|++|..+||.|+.. .+++..+.+.....-.-.....-+.+
T Consensus 406 S~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~v 485 (514)
T KOG2055|consen 406 SDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHV 485 (514)
T ss_pred cCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccce
Confidence 9999999999654 46777777777889999999999999988864 78888886542211111222334568
Q ss_pred EEEEEeCCCCEEEEEEcCCeEEEEECC
Q 003840 727 HSCVFHPTYPSLLVIGCYQSLELWNMS 753 (792)
Q Consensus 727 ~si~fspdg~~L~sgs~dg~I~IwDl~ 753 (792)
+|++|+|.+.++++|...|.|.+|.+.
T Consensus 486 tc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 486 TCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred EEEEecCCCceEEeecCCCceeeEeec
Confidence 999999999999999999999999874
No 147
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=1.7e-21 Score=225.16 Aligned_cols=273 Identities=19% Similarity=0.283 Sum_probs=215.5
Q ss_pred EEEEEcCCCC-EEEEEe----------CCCeEEEEECCCCc------eeEEeccCCCCEEEEEECCCCCe----EEEEeC
Q 003840 516 ICCHFSSDGK-LLATGG----------HDKKAVLWHTDTLK------SKTNLEEHSSLITDVRFSPSMPR----LATSSF 574 (792)
Q Consensus 516 ~~lafspdg~-~Lasgs----------~Dg~I~vWdl~t~~------~~~~l~~h~~~V~~i~fspdg~~----Lasgs~ 574 (792)
-.++|+|++. ++|+|. .+.++.||.++... .+..+. -....++++|.+.+.. ||.|.+
T Consensus 10 a~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~-s~~rF~kL~W~~~g~~~~GlIaGG~e 88 (1049)
T KOG0307|consen 10 ATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQ-SSNRFNKLAWGSYGSHSHGLIAGGLE 88 (1049)
T ss_pred ceEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccccccccccc-ccccceeeeecccCCCccceeecccc
Confidence 4578999886 666553 34556666554222 222222 3456889999997765 899999
Q ss_pred CCcEEEEeCCCC-----CceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEe-----eCCeeEEE
Q 003840 575 DKTVRVWDADNP-----GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF-----KGGTAQMR 644 (792)
Q Consensus 575 Dg~V~IWdl~s~-----~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~-----~~~~~~v~ 644 (792)
||.|.+||...- ...+.++..|.+.|..++|++...+++++|+.||.|+|||++..+.-..+ ...+.+++
T Consensus 89 dG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~ls 168 (1049)
T KOG0307|consen 89 DGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLS 168 (1049)
T ss_pred CCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEec
Confidence 999999998751 23456777899999999999999999999999999999999875543332 35678899
Q ss_pred EecCCCEEEEE-EcCCeEEEEECCCCeEEEEecCCCC--CeEEEEEcCCCC-EEEEEeCC----eEEEEECCCCCCcceE
Q 003840 645 FQPHLGRYLAA-AAENVVSILDAETQACRLSLQGHTK--PIDSVCWDPSGE-LLASVSED----SVRVWTVGSGSEGECV 716 (792)
Q Consensus 645 ~sp~~~~lla~-s~dg~I~i~D~~t~~~~~~l~~h~~--~V~sv~~spdg~-~Las~s~d----~I~IwDl~s~~~~~~i 716 (792)
|+....++++. +.+|.+.|||++..+.+..+..+.. .+..|.|+|+.. .|+++++| .|.+||++... ..+
T Consensus 169 WNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~as--sP~ 246 (1049)
T KOG0307|consen 169 WNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFAS--SPL 246 (1049)
T ss_pred cchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccC--Cch
Confidence 98887776655 4577999999999988888876655 467899999875 45555544 79999998543 566
Q ss_pred EEeecCCCceEEEEEeCCC-CEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCC-EEEEEeCCCcEEEe
Q 003840 717 HELSCNGNKFHSCVFHPTY-PSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETG-YVASASHDKFVKLW 791 (792)
Q Consensus 717 ~~~~~~~~~i~si~fspdg-~~L~sgs~dg~I~IwDl~~~~~~-~~~~h~~~V~sl~fspdg~-~LaSgs~DG~I~IW 791 (792)
+.+.+|...|.++.|++.+ .++++++.|+.|.+|+.++++.+ .+.....++..+.|+|..- .|++++-||.|.||
T Consensus 247 k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~ 324 (1049)
T KOG0307|consen 247 KILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIY 324 (1049)
T ss_pred hhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeee
Confidence 7778999999999999966 88999999999999999999998 6667788999999999765 78888899999987
No 148
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=5e-20 Score=189.95 Aligned_cols=313 Identities=18% Similarity=0.219 Sum_probs=226.2
Q ss_pred eeeeccCCCCCCCCCCCcceeccCCcceeeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC------CceeE
Q 003840 475 VESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT------LKSKT 548 (792)
Q Consensus 475 v~~~l~~d~~~~~d~~~~~~d~~~~~~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t------~~~~~ 548 (792)
|+.||...+..+.....+.+.......--+.+.+.+|.+.|.+|.|+.++++||+|+.|..++||+++. .+++.
T Consensus 19 i~~FL~QR~i~~~~~~~k~F~~~~~~R~~~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~ 98 (609)
T KOG4227|consen 19 IESFLCQREIGSVKSVVKTFRPDFQHRPFCQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIG 98 (609)
T ss_pred eeeeeeecccCCChhhhhhhchhhhhcchhhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCce
Confidence 555665554444333333332222112223456789999999999999999999999999999999863 34444
Q ss_pred Eec-cCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEec--ccCCCeEEEEEcCCCCeEEEEEeCCCcEEEE
Q 003840 549 NLE-EHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM--GHSASVMSLDFHPNKDDLICSCDGDGEIRYW 625 (792)
Q Consensus 549 ~l~-~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~--~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iw 625 (792)
... .|...|.|++|...+++|++|..+++|.+.|+++ ...+..+. ...+.|+.+..+|.. ++|++.+.++.|.+|
T Consensus 99 ~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt-~qsi~V~~~~~~~~~VY~m~~~P~D-N~~~~~t~~~~V~~~ 176 (609)
T KOG4227|consen 99 VMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIET-KQSIYVANENNNRGDVYHMDQHPTD-NTLIVVTRAKLVSFI 176 (609)
T ss_pred eccCccccceEEEEEccCCeeEecCCCcceeEeeeccc-ceeeeeecccCcccceeecccCCCC-ceEEEEecCceEEEE
Confidence 443 3668999999999999999999999999999998 44444443 234589999999994 567788999999999
Q ss_pred EcCCCe------eEEEeeCCeeEEEEecCCCEEEE-EEcCCeEEEEECCCCe-EEEEecC------CCCCeEEEEEcCCC
Q 003840 626 SINNGS------CTRVFKGGTAQMRFQPHLGRYLA-AAAENVVSILDAETQA-CRLSLQG------HTKPIDSVCWDPSG 691 (792)
Q Consensus 626 dl~~~~------~~~~~~~~~~~v~~sp~~~~lla-~s~dg~I~i~D~~t~~-~~~~l~~------h~~~V~sv~~spdg 691 (792)
|++... |...+......+.|+|....|++ ....+.+.+||.+... .+....+ ......++.|+|+|
T Consensus 177 D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G 256 (609)
T KOG4227|consen 177 DNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSG 256 (609)
T ss_pred eccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCC
Confidence 998754 22223344567889998876655 5557899999998753 2222211 12234678899999
Q ss_pred CEEEEEeCC-eEEEEECCCCCCcceEEEeec------CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC----------
Q 003840 692 ELLASVSED-SVRVWTVGSGSEGECVHELSC------NGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSE---------- 754 (792)
Q Consensus 692 ~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~------~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~---------- 754 (792)
+.|.+.-.. .-.+||+.+... .+..+.. ....+.+|+|..|.. |++|+.+-.|++|.+..
T Consensus 257 ~Q~msiRR~~~P~~~D~~S~R~--~V~k~D~N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~WklP~~~ds~G~~~I 333 (609)
T KOG4227|consen 257 NQFMSIRRGKCPLYFDFISQRC--FVLKSDHNPNGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWKLPRANDSYGFTQI 333 (609)
T ss_pred CeehhhhccCCCEEeeeecccc--eeEeccCCCCcceeeeeeeeeeeeccee-eeccCcccceEEEecCCCccccCcccc
Confidence 988887777 777888876422 2222221 123467788877766 88898888999998743
Q ss_pred --------------CcEEEEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003840 755 --------------NKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 792 (792)
Q Consensus 755 --------------~~~~~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd 792 (792)
+....+.+|...++.+.|++...+|++.+..+.|+||.
T Consensus 334 G~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS 385 (609)
T KOG4227|consen 334 GHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWS 385 (609)
T ss_pred CcchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhheeccc
Confidence 12336789999999999999999999999999999993
No 149
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.85 E-value=7e-20 Score=183.30 Aligned_cols=206 Identities=20% Similarity=0.319 Sum_probs=166.8
Q ss_pred ccCCCCEEEEEECC-CCCeEEEEeCCCcEEEEeCCCCC------cee--------EEecccCCCeEEEEEcCCCCeEEEE
Q 003840 551 EEHSSLITDVRFSP-SMPRLATSSFDKTVRVWDADNPG------YSL--------RTFMGHSASVMSLDFHPNKDDLICS 615 (792)
Q Consensus 551 ~~h~~~V~~i~fsp-dg~~Lasgs~Dg~V~IWdl~s~~------~~i--------~~~~~h~~~V~sl~fspd~~~ll~s 615 (792)
..|.+.|+++...+ .|+++++|+.||.|.|||+.+.. ... ..-.+|+..|.++.|.|-+.-+|.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 35788999999987 68899999999999999998532 111 1123688899999999988889999
Q ss_pred EeCCCcEEEEEcCCCeeEEEee--CCeeEEEEecCCC---EEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCC
Q 003840 616 CDGDGEIRYWSINNGSCTRVFK--GGTAQMRFQPHLG---RYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPS 690 (792)
Q Consensus 616 gs~Dg~I~iwdl~~~~~~~~~~--~~~~~v~~sp~~~---~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spd 690 (792)
++.|.++++||.++......|+ +.+..-+++|-.. .+++|..+-.|++.|+.++.+..++.+|...|.+|.|+|.
T Consensus 120 sSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~ 199 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPS 199 (397)
T ss_pred ccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccC
Confidence 9999999999999988776654 5566667777543 3445556779999999999999999999999999999998
Q ss_pred CC-EEEEEeCC-eEEEEECCCCC------------CcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCc
Q 003840 691 GE-LLASVSED-SVRVWTVGSGS------------EGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK 756 (792)
Q Consensus 691 g~-~Las~s~d-~I~IwDl~s~~------------~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~ 756 (792)
.+ .|++|+.| .|++||++... ....+..-..|.+.+..++|+.++.++++++.|..+++|+..+|+
T Consensus 200 ~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ 279 (397)
T KOG4283|consen 200 SEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGR 279 (397)
T ss_pred ceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCc
Confidence 77 56778888 99999997541 111222234567789999999999999999999999999998775
No 150
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.85 E-value=7.2e-20 Score=199.18 Aligned_cols=269 Identities=17% Similarity=0.280 Sum_probs=213.2
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEe
Q 003840 514 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTF 593 (792)
Q Consensus 514 ~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~ 593 (792)
.|..++|-|||.-|+.+. +..+.|||...|..+.++++|.+.|.|++|+.||+.|++|+.|+.|.||+-.-++. ..+
T Consensus 14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~--LkY 90 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGI--LKY 90 (1081)
T ss_pred chheeEECCCCceEEEec-CCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccce--eee
Confidence 799999999999888775 55899999999999999999999999999999999999999999999998764332 222
Q ss_pred cccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEE-EeeCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEE
Q 003840 594 MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR-VFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACR 672 (792)
Q Consensus 594 ~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~-~~~~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~ 672 (792)
.|.+.|.|+.|+|-.. .+++|+ -...-+|........+ .....+.+++|..+|.+++.|-.+|+|.+-+....+.+
T Consensus 91 -SH~D~IQCMsFNP~~h-~LasCs-LsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~ 167 (1081)
T KOG1538|consen 91 -SHNDAIQCMSFNPITH-QLASCS-LSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKV 167 (1081)
T ss_pred -ccCCeeeEeecCchHH-Hhhhcc-hhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcce
Confidence 5999999999999865 455776 3457789877654433 23345677899999999999999999999865433322
Q ss_pred E--EecCCCCCeEEEEEcCCC-----CEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcC
Q 003840 673 L--SLQGHTKPIDSVCWDPSG-----ELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY 744 (792)
Q Consensus 673 ~--~l~~h~~~V~sv~~spdg-----~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~d 744 (792)
. .-.+.+++|++|+|+|.. ..+++...+ ++.+|.+.. ..+..-..-+....++.+.++|.++++|++|
T Consensus 168 ~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG----~~Igk~r~L~FdP~CisYf~NGEy~LiGGsd 243 (1081)
T KOG1538|consen 168 KIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSG----KQIGKDRALNFDPCCISYFTNGEYILLGGSD 243 (1081)
T ss_pred EEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecc----eeecccccCCCCchhheeccCCcEEEEccCC
Confidence 2 223467899999999953 367777766 777777643 2333223334456788999999999999999
Q ss_pred CeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003840 745 QSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 792 (792)
Q Consensus 745 g~I~IwDl~~~~~~~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd 792 (792)
+.+.+|.-+.-..-++...+.+|+.++..|++.+++.|+-||+|-.|+
T Consensus 244 k~L~~fTR~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyN 291 (1081)
T KOG1538|consen 244 KQLSLFTRDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYN 291 (1081)
T ss_pred CceEEEeecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhh
Confidence 999999866555557777889999999999999999999999997664
No 151
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.85 E-value=2e-19 Score=182.27 Aligned_cols=265 Identities=18% Similarity=0.281 Sum_probs=203.8
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEECCC-----C-------ceeEEec-cCCCCEEEEEEC-------CCCCeEEEEeC
Q 003840 515 VICCHFSSDGKLLATGGHDKKAVLWHTDT-----L-------KSKTNLE-EHSSLITDVRFS-------PSMPRLATSSF 574 (792)
Q Consensus 515 V~~lafspdg~~Lasgs~Dg~I~vWdl~t-----~-------~~~~~l~-~h~~~V~~i~fs-------pdg~~Lasgs~ 574 (792)
...+.|+|||..|++-+.|..+.+|++.. . +...+++ .....|.+.+|- |+..++++.+.
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr 131 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR 131 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence 55789999999999999999999998741 1 1111111 235668888886 56779999999
Q ss_pred CCcEEEEeCCCCCceeEEecc--cCC---CeEEEEEcCCCCeEEEEEeCCCcEEEEEc-CCCeeEEEe----------eC
Q 003840 575 DKTVRVWDADNPGYSLRTFMG--HSA---SVMSLDFHPNKDDLICSCDGDGEIRYWSI-NNGSCTRVF----------KG 638 (792)
Q Consensus 575 Dg~V~IWdl~s~~~~i~~~~~--h~~---~V~sl~fspd~~~ll~sgs~Dg~I~iwdl-~~~~~~~~~----------~~ 638 (792)
|.-|++||.-+ ++....+.+ |.. ...+++|+|||..|+ ++....|++||+ +.|.....+ .+
T Consensus 132 ~~PIh~wdaft-G~lraSy~~ydh~de~taAhsL~Fs~DGeqlf--aGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~g 208 (406)
T KOG2919|consen 132 DQPIHLWDAFT-GKLRASYRAYDHQDEYTAAHSLQFSPDGEQLF--AGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKG 208 (406)
T ss_pred cCceeeeeccc-cccccchhhhhhHHhhhhheeEEecCCCCeEe--ecccceEEEeeccCCCCCCcchhhhhcccccccc
Confidence 99999999988 544444442 333 346899999998776 556899999999 555422211 23
Q ss_pred CeeEEEEecCCC-EEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC--eEEEEECCCCCCcce
Q 003840 639 GTAQMRFQPHLG-RYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSEGEC 715 (792)
Q Consensus 639 ~~~~v~~sp~~~-~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d--~I~IwDl~s~~~~~~ 715 (792)
-+.+++|+|... .+++++....+-||.-....++..+.+|.+.|+.++|.++|+.|++|+.. .|..||++... ..
T Consensus 209 iisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~--~p 286 (406)
T KOG2919|consen 209 IISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSR--DP 286 (406)
T ss_pred eeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhcc--ch
Confidence 467789999877 56667778899999999999999999999999999999999999999865 99999998643 33
Q ss_pred EEEeecCCC---ceEEEEEeCCCCEEEEEEcCCeEEEEECCC-CcEE-EEcccCCCeEEEEEeCCCCEEEEEeC
Q 003840 716 VHELSCNGN---KFHSCVFHPTYPSLLVIGCYQSLELWNMSE-NKTM-TLTAHEGLIAALAVSTETGYVASASH 784 (792)
Q Consensus 716 i~~~~~~~~---~i~si~fspdg~~L~sgs~dg~I~IwDl~~-~~~~-~~~~h~~~V~sl~fspdg~~LaSgs~ 784 (792)
+..+..|.. .-.-+...|++++|++|+.+|.|++||+++ +..+ .+..|...|+.++++|--.++|+++.
T Consensus 287 v~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssG 360 (406)
T KOG2919|consen 287 VYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSG 360 (406)
T ss_pred hhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccC
Confidence 444443332 333455678999999999999999999998 5534 67789999999999999888888764
No 152
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.84 E-value=1.2e-19 Score=197.80 Aligned_cols=247 Identities=15% Similarity=0.259 Sum_probs=187.7
Q ss_pred eeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEE--eccCCCCEEEEEECCCCC-eEEEEeCCCcEEEEe
Q 003840 506 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTN--LEEHSSLITDVRFSPSMP-RLATSSFDKTVRVWD 582 (792)
Q Consensus 506 ~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~--l~~h~~~V~~i~fspdg~-~Lasgs~Dg~V~IWd 582 (792)
+....|.+.|..+.|-|....|++++.|.++++||++..+++.. +.+|...|.+++|.+.+. .|++|+.||.|.|||
T Consensus 94 k~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD 173 (720)
T KOG0321|consen 94 KKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWD 173 (720)
T ss_pred cccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEE
Confidence 45668999999999999667899999999999999999888877 889999999999999654 789999999999999
Q ss_pred CCCCCc--------------------------eeEEecccCCCeEE---EEEcCCCCeEEEEEeC-CCcEEEEEcCCCee
Q 003840 583 ADNPGY--------------------------SLRTFMGHSASVMS---LDFHPNKDDLICSCDG-DGEIRYWSINNGSC 632 (792)
Q Consensus 583 l~s~~~--------------------------~i~~~~~h~~~V~s---l~fspd~~~ll~sgs~-Dg~I~iwdl~~~~~ 632 (792)
++..+. -+.....+...|.+ +.+..|... |++++. |+.|+|||+++..+
T Consensus 174 ~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~t-laSaga~D~~iKVWDLRk~~~ 252 (720)
T KOG0321|consen 174 CRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDEST-LASAGAADSTIKVWDLRKNYT 252 (720)
T ss_pred EeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccce-eeeccCCCcceEEEeeccccc
Confidence 974320 01122234444554 445556554 456665 99999999997654
Q ss_pred EEEe--------------eCCeeEEEEecCCCEEEEEEcCCeEEEEECCCC--eEEEEecCCCCC--eEEEEEcCCCCEE
Q 003840 633 TRVF--------------KGGTAQMRFQPHLGRYLAAAAENVVSILDAETQ--ACRLSLQGHTKP--IDSVCWDPSGELL 694 (792)
Q Consensus 633 ~~~~--------------~~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~--~~~~~l~~h~~~--V~sv~~spdg~~L 694 (792)
.... ..+..++.....|.++++.+.|+.|++|++.+. .++..+.++... ...-+.+|++.+|
T Consensus 253 ~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l 332 (720)
T KOG0321|consen 253 AYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSL 332 (720)
T ss_pred ccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceE
Confidence 4321 123556777777899999999999999999875 344555543322 1223468999999
Q ss_pred EEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCC-CEEEEEEcCCeEEEEECCCC
Q 003840 695 ASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTY-PSLLVIGCYQSLELWNMSEN 755 (792)
Q Consensus 695 as~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg-~~L~sgs~dg~I~IwDl~~~ 755 (792)
++++.| ..++|.+.+.. .....+.+|...|++++|.|.. .-+++++.|-.++||++..+
T Consensus 333 ~SgSsd~~ayiw~vs~~e--~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 333 LSGSSDEQAYIWVVSSPE--APPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred eccCCCcceeeeeecCcc--CChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 999999 99999998653 4455677888999999998743 34777799999999999654
No 153
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.84 E-value=3.6e-21 Score=212.12 Aligned_cols=210 Identities=22% Similarity=0.345 Sum_probs=187.3
Q ss_pred CCCcceeccCCcceeeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCe
Q 003840 489 AGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPR 568 (792)
Q Consensus 489 ~~~~~~d~~~~~~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~ 568 (792)
..+.+|.+.+.. .+..|.+|..+|.|+.|+.+..+|++|+.+|+|++||++..+.+++|.+|...|..+.|+|-+.+
T Consensus 50 ~k~~L~~i~kp~---~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~ 126 (825)
T KOG0267|consen 50 EKVNLWAIGKPN---AITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEF 126 (825)
T ss_pred eeeccccccCCc---hhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEE
Confidence 334445444433 34468999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee---CCeeEEEE
Q 003840 569 LATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRF 645 (792)
Q Consensus 569 Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~---~~~~~v~~ 645 (792)
++.|+.|+.+++||++. ..+...+.+|...|.++.|+|+|. +++++++|.+++|||+..|+....|+ +.+..+.|
T Consensus 127 ~a~gStdtd~~iwD~Rk-~Gc~~~~~s~~~vv~~l~lsP~Gr-~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~ 204 (825)
T KOG0267|consen 127 FASGSTDTDLKIWDIRK-KGCSHTYKSHTRVVDVLRLSPDGR-WVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEF 204 (825)
T ss_pred eccccccccceehhhhc-cCceeeecCCcceeEEEeecCCCc-eeeccCCcceeeeeccccccccccccccccccccccc
Confidence 99999999999999997 667888999999999999999986 66699999999999999999998887 66777889
Q ss_pred ecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEE
Q 003840 646 QPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVR 703 (792)
Q Consensus 646 sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d~I~ 703 (792)
+|..-.+..|+.|++|++||+++.+.+.........|.|++|+++++.+++|....+.
T Consensus 205 hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~sl~ 262 (825)
T KOG0267|consen 205 HPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQISLS 262 (825)
T ss_pred CchhhhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCceeeecCchhhhh
Confidence 9998888889999999999999999999888888999999999999999988776444
No 154
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=3.2e-19 Score=180.40 Aligned_cols=241 Identities=17% Similarity=0.246 Sum_probs=181.6
Q ss_pred EEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCC----ceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEE
Q 003840 548 TNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG----YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIR 623 (792)
Q Consensus 548 ~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~----~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~ 623 (792)
..+++|.+.|++++|+.||++|++++.|+.|+||+++.-. .+++.-. .-+..+.+.|.||-..+++++-...+++
T Consensus 80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nv-e~dhpT~V~FapDc~s~vv~~~~g~~l~ 158 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNV-EYDHPTRVVFAPDCKSVVVSVKRGNKLC 158 (420)
T ss_pred hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccc-cCCCceEEEECCCcceEEEEEccCCEEE
Confidence 4577999999999999999999999999999999998511 1222111 1235678999999999998998889999
Q ss_pred EEEcCCCe---eE------------EEeeCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEc
Q 003840 624 YWSINNGS---CT------------RVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWD 688 (792)
Q Consensus 624 iwdl~~~~---~~------------~~~~~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~s 688 (792)
+|.+...+ .. +.....+..+-....+.+|++++.|..|.+||++ +..+..+......-+..+.+
T Consensus 159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavS 237 (420)
T KOG2096|consen 159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVS 237 (420)
T ss_pred EEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeC
Confidence 99875422 11 0111223334455666788889999999999999 88888887766677788999
Q ss_pred CCCCEEEEEeCC-eEEEEECCCCC-----CcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCC-------
Q 003840 689 PSGELLASVSED-SVRVWTVGSGS-----EGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSEN------- 755 (792)
Q Consensus 689 pdg~~Las~s~d-~I~IwDl~s~~-----~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~------- 755 (792)
|+|++|++++-- .|+||.+--.+ +...+..+.+|...|..++|+++...+++.+.||+++|||.+-.
T Consensus 238 P~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDp 317 (420)
T KOG2096|consen 238 PDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDP 317 (420)
T ss_pred CCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCc
Confidence 999999999988 89999974332 34556788999999999999999999999999999999998532
Q ss_pred cEE-----EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEe
Q 003840 756 KTM-----TLTAHEGLIAALAVSTETGYVASASHDKFVKLW 791 (792)
Q Consensus 756 ~~~-----~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IW 791 (792)
+++ .+.+..+....++++|+|..||.+. ...|++|
T Consensus 318 k~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~ 357 (420)
T KOG2096|consen 318 KILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVF 357 (420)
T ss_pred hHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEE
Confidence 111 1122233445899999999887643 3345554
No 155
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.84 E-value=9.4e-20 Score=192.24 Aligned_cols=254 Identities=18% Similarity=0.238 Sum_probs=200.9
Q ss_pred EECCCCceeEEeccCCCCEEEEEECCCC--CeEEEEeCCCcEEEEeCC---CCCceeEEecccCCCeEEEEEcCCCCeEE
Q 003840 539 WHTDTLKSKTNLEEHSSLITDVRFSPSM--PRLATSSFDKTVRVWDAD---NPGYSLRTFMGHSASVMSLDFHPNKDDLI 613 (792)
Q Consensus 539 Wdl~t~~~~~~l~~h~~~V~~i~fspdg--~~Lasgs~Dg~V~IWdl~---s~~~~i~~~~~h~~~V~sl~fspd~~~ll 613 (792)
+|+.+......++.+.+.|++++|+|.. +++++|...|.|-+||+. .....+..+..|..+|.+|.|+|.+...|
T Consensus 171 l~l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i 250 (498)
T KOG4328|consen 171 LDLDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQI 250 (498)
T ss_pred cccccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhhe
Confidence 4455555666677789999999999954 478899999999999995 33345678889999999999999988889
Q ss_pred EEEeCCCcEEEEEcCCCeeEEEee-----CCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeE-EEEecCCCCCeEEEEE
Q 003840 614 CSCDGDGEIRYWSINNGSCTRVFK-----GGTAQMRFQPHLGRYLAAAAENVVSILDAETQAC-RLSLQGHTKPIDSVCW 687 (792)
Q Consensus 614 ~sgs~Dg~I~iwdl~~~~~~~~~~-----~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~-~~~l~~h~~~V~sv~~ 687 (792)
++.+.||+|++-|++.......+. .....+.|+.+...++++..-|.+.+||.++... ...+.-|...|++|++
T Consensus 251 ~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~ 330 (498)
T KOG4328|consen 251 YSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVAL 330 (498)
T ss_pred eeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeec
Confidence 999999999999998764333322 2334566777888888888888999999998755 6667779999999999
Q ss_pred cCCC-CEEEEEeCC-eEEEEECCCCCCcc-eEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC----CCcEEEE
Q 003840 688 DPSG-ELLASVSED-SVRVWTVGSGSEGE-CVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMS----ENKTMTL 760 (792)
Q Consensus 688 spdg-~~Las~s~d-~I~IwDl~s~~~~~-~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~----~~~~~~~ 760 (792)
+|-. .+|++++.| +++|||++...... ++.....|...|.+..|+|.+..|++.+.|..|+|||.. .......
T Consensus 331 NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~ 410 (498)
T KOG4328|consen 331 NPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGT 410 (498)
T ss_pred CCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccce
Confidence 9955 478899999 99999998754433 344555688899999999999889999999999999984 3333333
Q ss_pred cccCC----C--eEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003840 761 TAHEG----L--IAALAVSTETGYVASASHDKFVKLWK 792 (792)
Q Consensus 761 ~~h~~----~--V~sl~fspdg~~LaSgs~DG~I~IWd 792 (792)
..|.. + .....|.|+..+|++|..-..|-|||
T Consensus 411 I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~ 448 (498)
T KOG4328|consen 411 IPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFD 448 (498)
T ss_pred eeccCcccccccchhheeCCCccEEEEeccCcceeEEc
Confidence 33332 2 33568999999999998888888875
No 156
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.84 E-value=1.9e-17 Score=181.70 Aligned_cols=282 Identities=31% Similarity=0.547 Sum_probs=227.7
Q ss_pred eeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-eeEEeccCC-CCEEEEEE-CCCCC-eEEEEeC-CCcEEEE
Q 003840 507 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK-SKTNLEEHS-SLITDVRF-SPSMP-RLATSSF-DKTVRVW 581 (792)
Q Consensus 507 ~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~-~~~~l~~h~-~~V~~i~f-spdg~-~Lasgs~-Dg~V~IW 581 (792)
.+..|...|.++.|.+++..++.++.|+.+.+|+..... .+..+..+. ..+..+.+ .+++. +++..+. |+.+.+|
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 139 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLW 139 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEE
Confidence 567899999999999999999999999999999999887 677776644 37787777 88887 5555445 9999999
Q ss_pred eCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeC-CCcEEEEEcCCCeeEEEeeC---CeeEEEEecCCCEEEEE-E
Q 003840 582 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDG-DGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAA-A 656 (792)
Q Consensus 582 dl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~-Dg~I~iwdl~~~~~~~~~~~---~~~~v~~sp~~~~lla~-s 656 (792)
|+.........+..|...|.+++|+|++. ++++++. |+.+++|++..+..+..+.. .+.++.|++++..++++ +
T Consensus 140 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 218 (466)
T COG2319 140 DLSTPGKLIRTLEGHSESVTSLAFSPDGK-LLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGS 218 (466)
T ss_pred EecCCCeEEEEEecCcccEEEEEECCCCC-EEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEec
Confidence 99864567788889999999999999987 4446664 99999999998777776654 67888999888745555 7
Q ss_pred cCCeEEEEECCCCeEEE-EecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCC
Q 003840 657 AENVVSILDAETQACRL-SLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPT 734 (792)
Q Consensus 657 ~dg~I~i~D~~t~~~~~-~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspd 734 (792)
.|+.|.+||...+..+. .+..|...+ ...|++++.++++++.+ .+++|++..... .+..+..|...+.++.|.|+
T Consensus 219 ~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~ 295 (466)
T COG2319 219 SDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSS--LLRTLSGHSSSVLSVAFSPD 295 (466)
T ss_pred CCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCc--EEEEEecCCccEEEEEECCC
Confidence 89999999999888877 688888775 44899999888888888 999999986643 23333567888999999999
Q ss_pred CCEEEEEEcCCeEEEEECCCCcEE-EE--cccCCCeEEEEEeCCCCEEEEE-eCCCcEEEeC
Q 003840 735 YPSLLVIGCYQSLELWNMSENKTM-TL--TAHEGLIAALAVSTETGYVASA-SHDKFVKLWK 792 (792)
Q Consensus 735 g~~L~sgs~dg~I~IwDl~~~~~~-~~--~~h~~~V~sl~fspdg~~LaSg-s~DG~I~IWd 792 (792)
+..+++++.|+.+.+||..+.... .. ..|...|..+.|.+++..++.+ ..|+.+++|+
T Consensus 296 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 357 (466)
T COG2319 296 GKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWD 357 (466)
T ss_pred CCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeee
Confidence 988998998988999999888766 33 3688889999994332455555 6788898885
No 157
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.83 E-value=3.6e-19 Score=188.73 Aligned_cols=279 Identities=17% Similarity=0.232 Sum_probs=209.0
Q ss_pred eeEeCCCcchhhcccccccCCCCCCceeeeccCC----CCCCCCCCCcceeccCCc-ceeeeeeeecCCCCeEEEEEcCC
Q 003840 449 QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHD----DTDPRDAGGRGMDVSQGF-SFKEANSVRASTSKVICCHFSSD 523 (792)
Q Consensus 449 ~lWD~~tg~~~~~~~~~~~~g~~d~~v~~~l~~d----~~~~~d~~~~~~d~~~~~-~~~~~~~l~~H~~~V~~lafspd 523 (792)
+|||+...+...++...-... ......|-... ..-..|...++|+..... ....+..+.+ +.-.|++....
T Consensus 15 kl~D~s~~~~~~~~~~~t~~p--g~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~g--d~~~Cv~~~s~ 90 (673)
T KOG4378|consen 15 KLSDFSDLETKSEYVHQTAEP--GDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTG--DNAFCVACASQ 90 (673)
T ss_pred EEeecccccCccccccCCCCC--cceeeeccccceEEEeecCCceeEEEecccCCCCccceeecccc--chHHHHhhhhc
Confidence 889998877666554333221 12222221111 122345555555544331 1222222222 25566666666
Q ss_pred CCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEeccc-CCCeEE
Q 003840 524 GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGH-SASVMS 602 (792)
Q Consensus 524 g~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h-~~~V~s 602 (792)
..|+++|+..+.|+|||+....+.+.+++|...|+++.|+....|||+++..|.|.|..+.+ +.....|... ...|.-
T Consensus 91 S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t-~~~tt~f~~~sgqsvRl 169 (673)
T KOG4378|consen 91 SLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKT-KQKTTTFTIDSGQSVRL 169 (673)
T ss_pred ceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEeccc-CccccceecCCCCeEEE
Confidence 68999999999999999998888888999999999999999999999999999999999988 4444455433 455668
Q ss_pred EEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEE----eeCCeeEEEEecCCCEE-EEEEcCCeEEEEECCCCeEEEEecC
Q 003840 603 LDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV----FKGGTAQMRFQPHLGRY-LAAAAENVVSILDAETQACRLSLQG 677 (792)
Q Consensus 603 l~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~----~~~~~~~v~~sp~~~~l-la~s~dg~I~i~D~~t~~~~~~l~~ 677 (792)
+.|++..+.+|.+++.+|.|.+||+.....+.. +..+...++|+|....| ++.+.|..|.+||.+..+....+.
T Consensus 170 l~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~- 248 (673)
T KOG4378|consen 170 LRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT- 248 (673)
T ss_pred eecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceee-
Confidence 999999999999999999999999987766544 35677889999987665 557779999999999877666655
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCC
Q 003840 678 HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTY 735 (792)
Q Consensus 678 h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg 735 (792)
...+...++|.++|.+|+.|... .|+.||++..+ .++..+..|...|++++|-+.-
T Consensus 249 y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k--~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 249 YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTK--APVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred ecCCcceeeecCCceEEEeecCCceEEEEecccCC--CCceEeeecccceeEEEeeecc
Confidence 45678999999999999999988 99999998653 5677778888899999998764
No 158
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.82 E-value=8.9e-20 Score=180.41 Aligned_cols=283 Identities=18% Similarity=0.200 Sum_probs=202.3
Q ss_pred eeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEec-cCCCCEEEEEECCCCCeEEEEeCCCcEEEEe
Q 003840 504 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE-EHSSLITDVRFSPSMPRLATSSFDKTVRVWD 582 (792)
Q Consensus 504 ~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~-~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWd 582 (792)
++..+++|.+.|+|+.|..+++ |.+|..-|.|++|++.+.+.+..++ .|...|+.+.-.|+ ..|.+-+.|+.+.+|+
T Consensus 6 P~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ 83 (323)
T KOG0322|consen 6 PFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWT 83 (323)
T ss_pred CeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEE
Confidence 5677889999999999998885 8899999999999999999988888 67888999999887 5888999999999999
Q ss_pred CCCCCceeEEecccCCCeEEEEEcCCC-----C---eEEEEEeCC-CcEEEEEcCCCeeEEEee-------CCeeEEEEe
Q 003840 583 ADNPGYSLRTFMGHSASVMSLDFHPNK-----D---DLICSCDGD-GEIRYWSINNGSCTRVFK-------GGTAQMRFQ 646 (792)
Q Consensus 583 l~s~~~~i~~~~~h~~~V~sl~fspd~-----~---~ll~sgs~D-g~I~iwdl~~~~~~~~~~-------~~~~~v~~s 646 (792)
+.. ...+ ..|.-.++++-|++.. + .+++.-++. ..+.+-|......+...+ +.+.+..+.
T Consensus 84 ia~-s~~i---~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~ 159 (323)
T KOG0322|consen 84 IAY-SAFI---SIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKD 159 (323)
T ss_pred ccC-cceE---EEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeecc
Confidence 985 2222 2233445555555421 1 111111100 001112221111111111 122222322
Q ss_pred c-CCC--EEEEEEcCCeEEEEECCCC----------eEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCC-
Q 003840 647 P-HLG--RYLAAAAENVVSILDAETQ----------ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGS- 711 (792)
Q Consensus 647 p-~~~--~lla~s~dg~I~i~D~~t~----------~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~- 711 (792)
. .+. .+++|..+|.|.+||+.++ +.+.....|..+|.++.|.+.-..=++++.+ .+..|.+....
T Consensus 160 ~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~g 239 (323)
T KOG0322|consen 160 HACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTG 239 (323)
T ss_pred ccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccC
Confidence 2 122 3556777999999999997 3344455689999999999866655666666 88888886431
Q ss_pred CcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEE
Q 003840 712 EGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKL 790 (792)
Q Consensus 712 ~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~I 790 (792)
....-.++......+..+.+-||++.+++++.|+.|+||..++...+ .+..|.+.|++++|+|+..++|+++.|+.|.+
T Consensus 240 slq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISL 319 (323)
T KOG0322|consen 240 SLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISL 319 (323)
T ss_pred cccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEe
Confidence 11222333344566888999999999999999999999999999988 67789999999999999999999999999999
Q ss_pred eC
Q 003840 791 WK 792 (792)
Q Consensus 791 Wd 792 (792)
|+
T Consensus 320 Wk 321 (323)
T KOG0322|consen 320 WK 321 (323)
T ss_pred ee
Confidence 96
No 159
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.82 E-value=2.3e-18 Score=186.70 Aligned_cols=134 Identities=24% Similarity=0.430 Sum_probs=109.3
Q ss_pred CCeEEEEECCCC-eE----EEEecCCCCCeEEEEEcC-CCCEEEEEeCC-eEEEEECCCCC----CcceEEEeecCCCce
Q 003840 658 ENVVSILDAETQ-AC----RLSLQGHTKPIDSVCWDP-SGELLASVSED-SVRVWTVGSGS----EGECVHELSCNGNKF 726 (792)
Q Consensus 658 dg~I~i~D~~t~-~~----~~~l~~h~~~V~sv~~sp-dg~~Las~s~d-~I~IwDl~s~~----~~~~i~~~~~~~~~i 726 (792)
.|.|-||+++.. ++ +-.+. ....|+.+.|+| |...|+++++| .|++|.+..+. ....-..+..|..+|
T Consensus 602 gG~iai~el~~PGrLPDgv~p~l~-Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI 680 (1012)
T KOG1445|consen 602 GGVIAIYELNEPGRLPDGVMPGLF-NGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKI 680 (1012)
T ss_pred CceEEEEEcCCCCCCCcccccccc-cCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceE
Confidence 566777776543 11 11111 345699999999 67789999999 99999997653 234556788899999
Q ss_pred EEEEEeCC-CCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003840 727 HSCVFHPT-YPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 792 (792)
Q Consensus 727 ~si~fspd-g~~L~sgs~dg~I~IwDl~~~~~~-~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd 792 (792)
+++.|+|- .+.|++++.|-+|++||+.+.+.. .+.+|.+.|.+++|+|||+.+|+.+.||+|++|+
T Consensus 681 ~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~ 748 (1012)
T KOG1445|consen 681 TSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYE 748 (1012)
T ss_pred EEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeC
Confidence 99999994 467889999999999999998877 8899999999999999999999999999999985
No 160
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=1.8e-18 Score=174.83 Aligned_cols=273 Identities=16% Similarity=0.236 Sum_probs=202.4
Q ss_pred cceEEEEeCCCeeeecCCC---eeEeCCCcchhhcccccccCCCCCCceeeeccCCCCCCCCCCCcceeccCCcceeeee
Q 003840 430 KPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEAN 506 (792)
Q Consensus 430 k~~l~~s~Dg~~~~ss~s~---~lWD~~tg~~~~~~~~~~~~g~~d~~v~~~l~~d~~~~~d~~~~~~d~~~~~~~~~~~ 506 (792)
..++.|++-|.+++.+..+ -|||..|.. ..+
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~----------------------------------------------iar 59 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFR----------------------------------------------IAR 59 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccc----------------------------------------------hhh
Confidence 3478999999998886555 678766543 224
Q ss_pred eeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCC-eEEEEeCCCcEEEEeCCC
Q 003840 507 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP-RLATSSFDKTVRVWDADN 585 (792)
Q Consensus 507 ~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~-~Lasgs~Dg~V~IWdl~s 585 (792)
.+.+|..+|.|++||+||++|++++.|..|.+||+..|.+++.+. ...+|+.+.|+|... .+++.-.+..-.+-++..
T Consensus 60 ~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~ 138 (405)
T KOG1273|consen 60 MLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSD 138 (405)
T ss_pred hhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecC
Confidence 567899999999999999999999999999999999999888886 567899999999543 444444444455556654
Q ss_pred CCceeEEecc---cCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeC----CeeEEEEecCCCEEEEEEcC
Q 003840 586 PGYSLRTFMG---HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG----GTAQMRFQPHLGRYLAAAAE 658 (792)
Q Consensus 586 ~~~~i~~~~~---h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~----~~~~v~~sp~~~~lla~s~d 658 (792)
+...+..... ......+..|.+.|+ +|++|...|.+.++|..+.+++..++- .+..+.++..+..++.-+.|
T Consensus 139 ~~h~~Lp~d~d~dln~sas~~~fdr~g~-yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsD 217 (405)
T KOG1273|consen 139 PKHSVLPKDDDGDLNSSASHGVFDRRGK-YIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSD 217 (405)
T ss_pred CceeeccCCCccccccccccccccCCCC-EEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCC
Confidence 2211111110 111122345777776 555999999999999999999887763 45678899999999999999
Q ss_pred CeEEEEECCCC-------eE--EEEecC--CCCCeEEEEEcCCCCEEEEEeCC--eEEEEECCCCCCcceEEEeecCC-C
Q 003840 659 NVVSILDAETQ-------AC--RLSLQG--HTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSCNG-N 724 (792)
Q Consensus 659 g~I~i~D~~t~-------~~--~~~l~~--h~~~V~sv~~spdg~~Las~s~d--~I~IwDl~s~~~~~~i~~~~~~~-~ 724 (792)
..|+.|+++.- ++ ...+.. ....-.+++|+.+|.|++.++.. .++||.-..| ..++.+.+.. .
T Consensus 218 RvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~G---sLVKILhG~kgE 294 (405)
T KOG1273|consen 218 RVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIG---SLVKILHGTKGE 294 (405)
T ss_pred ceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCc---ceeeeecCCchh
Confidence 99999998631 11 111111 22335678999999999999876 8999999887 6777777766 5
Q ss_pred ceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 003840 725 KFHSCVFHPTYPSLLVIGCYQSLELWNMSE 754 (792)
Q Consensus 725 ~i~si~fspdg~~L~sgs~dg~I~IwDl~~ 754 (792)
....+.|+|-...|++. ..|.|+||....
T Consensus 295 ~l~DV~whp~rp~i~si-~sg~v~iw~~~~ 323 (405)
T KOG1273|consen 295 ELLDVNWHPVRPIIASI-ASGVVYIWAVVQ 323 (405)
T ss_pred heeecccccceeeeeec-cCCceEEEEeec
Confidence 57889999998877777 678999998754
No 161
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.82 E-value=6.1e-19 Score=190.90 Aligned_cols=241 Identities=20% Similarity=0.264 Sum_probs=197.8
Q ss_pred eeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEE
Q 003840 546 SKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYW 625 (792)
Q Consensus 546 ~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iw 625 (792)
+...+.+|.+.|.+|...|.|.+|++|+.||+|+||.+.+ +.+++++. ..+.|.||+|+|.....+++...+..+.|.
T Consensus 392 ~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~T-gRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~~~iv 469 (733)
T KOG0650|consen 392 CALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIAT-GRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGECVLIV 469 (733)
T ss_pred eeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeec-ceEEEEEe-ecceeEEEEecCCCCceeEEEEecCceEEe
Confidence 4456789999999999999999999999999999999998 77888776 566899999999877655555545555555
Q ss_pred EcCCCe---------------------------------------eEE-EeeCCeeEEEEecCCCEEEEEEcC---CeEE
Q 003840 626 SINNGS---------------------------------------CTR-VFKGGTAQMRFQPHLGRYLAAAAE---NVVS 662 (792)
Q Consensus 626 dl~~~~---------------------------------------~~~-~~~~~~~~v~~sp~~~~lla~s~d---g~I~ 662 (792)
+..-|. |+. .....+..+.|+..|.+|+++..+ ..|.
T Consensus 470 np~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~Vl 549 (733)
T KOG0650|consen 470 NPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVL 549 (733)
T ss_pred CccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEE
Confidence 533221 111 112346678899999999988774 4799
Q ss_pred EEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEE
Q 003840 663 ILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIG 742 (792)
Q Consensus 663 i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs 742 (792)
|+++...+...-|....+.|.++.|+|...+|++++...|+|||+... ..++.+......|..++++|.|..|++++
T Consensus 550 iHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kq---elvKkL~tg~kwiS~msihp~GDnli~gs 626 (733)
T KOG0650|consen 550 IHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQ---ELVKKLLTGSKWISSMSIHPNGDNLILGS 626 (733)
T ss_pred EEecccccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHH---HHHHHHhcCCeeeeeeeecCCCCeEEEec
Confidence 999988877766766678899999999999999999999999999764 55666666777899999999999999999
Q ss_pred cCCeEEEEECCCCcEE--EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEe
Q 003840 743 CYQSLELWNMSENKTM--TLTAHEGLIAALAVSTETGYVASASHDKFVKLW 791 (792)
Q Consensus 743 ~dg~I~IwDl~~~~~~--~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IW 791 (792)
.|+.++.||+.-.... ++..|...|++++|++.-.++++|+.||.+.||
T Consensus 627 ~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vf 677 (733)
T KOG0650|consen 627 YDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVF 677 (733)
T ss_pred CCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEE
Confidence 9999999999766433 788999999999999999999999999999886
No 162
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.80 E-value=5e-20 Score=205.18 Aligned_cols=274 Identities=22% Similarity=0.388 Sum_probs=214.8
Q ss_pred eeeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEE
Q 003840 502 FKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVW 581 (792)
Q Consensus 502 ~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IW 581 (792)
.+.++.+.+|...|+|+.|...|.++++|+.|..|+||..+++.+...+.+|.+.|++++.+.++.++++++.|..|++|
T Consensus 180 mk~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvW 259 (1113)
T KOG0644|consen 180 MKNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVW 259 (1113)
T ss_pred HHHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEE
Confidence 45677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEE-----e--eCCeeEEEEecCCCEEEE
Q 003840 582 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV-----F--KGGTAQMRFQPHLGRYLA 654 (792)
Q Consensus 582 dl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~-----~--~~~~~~v~~sp~~~~lla 654 (792)
.+.. +.++..+.+|.+.|++|+|+|-. +.+.||++++||.+-.-.+.. + +.-+..+.|...+..+++
T Consensus 260 rl~~-~~pvsvLrghtgavtaiafsP~~-----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~T 333 (1113)
T KOG0644|consen 260 RLPD-GAPVSVLRGHTGAVTAIAFSPRA-----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLT 333 (1113)
T ss_pred ecCC-CchHHHHhccccceeeeccCccc-----cCCCCCceEeccccccccccCCCCCCcccccceeeeecccccccccc
Confidence 9998 88899999999999999999863 678899999999982211111 1 122344556667777888
Q ss_pred EEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCC-CEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEe
Q 003840 655 AAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSG-ELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFH 732 (792)
Q Consensus 655 ~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg-~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fs 732 (792)
++.|+.-..|....... +...+.-+.++.+- .+.++.-.+ .+++|++.++ ...+.+.+|...+..+.++
T Consensus 334 gs~d~ea~n~e~~~l~~------~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g---~l~H~l~ghsd~~yvLd~H 404 (1113)
T KOG0644|consen 334 GSRDGEARNHEFEQLAW------RSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTG---QLLHNLMGHSDEVYVLDVH 404 (1113)
T ss_pred ccCCcccccchhhHhhh------hccceEEEeccccccccceeeeeeeEeeeeecccc---hhhhhhcccccceeeeeec
Confidence 88888877776543211 11112222222222 344455555 8999999877 6677778888999999999
Q ss_pred CCCCEE-EEEEcCCeEEEEECCCCcEE--EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEe
Q 003840 733 PTYPSL-LVIGCYQSLELWNMSENKTM--TLTAHEGLIAALAVSTETGYVASASHDKFVKLW 791 (792)
Q Consensus 733 pdg~~L-~sgs~dg~I~IwDl~~~~~~--~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IW 791 (792)
|-...+ ..++.||.+.|||+..+..+ ...+| +.+...+|++||..++...+-|.++|.
T Consensus 405 pfn~ri~msag~dgst~iwdi~eg~pik~y~~gh-~kl~d~kFSqdgts~~lsd~hgql~i~ 465 (1113)
T KOG0644|consen 405 PFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGH-GKLVDGKFSQDGTSIALSDDHGQLYIL 465 (1113)
T ss_pred CCCcHhhhhccCCCceEeeecccCCcceeeeccc-ceeeccccCCCCceEecCCCCCceEEe
Confidence 966544 57789999999999988776 34454 456677999999998877777888775
No 163
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.80 E-value=4.4e-18 Score=177.50 Aligned_cols=270 Identities=22% Similarity=0.314 Sum_probs=192.0
Q ss_pred cceeeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECC--------C--------CceeEEeccCCCCEEEEEEC
Q 003840 500 FSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTD--------T--------LKSKTNLEEHSSLITDVRFS 563 (792)
Q Consensus 500 ~~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~--------t--------~~~~~~l~~h~~~V~~i~fs 563 (792)
...+....|..|...|++|.|+|+|++||+|+.+|.|.+|-.. + ....+.+.+|...|..++|+
T Consensus 53 ~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws 132 (434)
T KOG1009|consen 53 MKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWS 132 (434)
T ss_pred eeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhcc
Confidence 3556778899999999999999999999999999999999755 2 34556778899999999999
Q ss_pred CCCCeEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCCe-eE
Q 003840 564 PSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGT-AQ 642 (792)
Q Consensus 564 pdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~-~~ 642 (792)
+++.++++++.|..+++||+.. +..+..+.+|...|..++|.|-+. ++++-+.|...+.+++.....+..+...+ ..
T Consensus 133 ~d~~~l~s~s~dns~~l~Dv~~-G~l~~~~~dh~~yvqgvawDpl~q-yv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~ 210 (434)
T KOG1009|consen 133 PDSNFLVSGSVDNSVRLWDVHA-GQLLAILDDHEHYVQGVAWDPLNQ-YVASKSSDRHPEGFSAKLKQVIKRHGLDIMPA 210 (434)
T ss_pred CCCceeeeeeccceEEEEEecc-ceeEeeccccccccceeecchhhh-hhhhhccCcccceeeeeeeeeeeeeeeeEeee
Confidence 9999999999999999999998 788899999999999999999865 55577778878887776655444332100 00
Q ss_pred EEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeC------C----eEEEEECCCCCC
Q 003840 643 MRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSE------D----SVRVWTVGSGSE 712 (792)
Q Consensus 643 v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~------d----~I~IwDl~s~~~ 712 (792)
..+.... ....++|--++.+ .-...++|+|+|.+|++.+. + ..++|+-. ..
T Consensus 211 ~~~~~~e--------~~s~rLfhDeTlk---------sFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk--~l 271 (434)
T KOG1009|consen 211 KAFNERE--------GKSTRLFHDETLK---------SFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRK--DL 271 (434)
T ss_pred cccCCCC--------cceeeeeecCchh---------hhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccc--cc
Confidence 0111110 1123333333222 22455778888887776432 1 23444432 12
Q ss_pred cceEEEeecCCCceEEEEEeC-----------------CCCEEEEEEcCCeEEEEECCCCcEE--EEcccCCCeEEEEEe
Q 003840 713 GECVHELSCNGNKFHSCVFHP-----------------TYPSLLVIGCYQSLELWNMSENKTM--TLTAHEGLIAALAVS 773 (792)
Q Consensus 713 ~~~i~~~~~~~~~i~si~fsp-----------------dg~~L~sgs~dg~I~IwDl~~~~~~--~~~~h~~~V~sl~fs 773 (792)
..++..+.+.......+.|+| -++.+++....+.|+|||..+..++ .-.-|-..|++++|+
T Consensus 272 ~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svyvydtq~~~P~~~v~nihy~~iTDiaws 351 (434)
T KOG1009|consen 272 KRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSVYVYDTQTLEPLAVVDNIHYSAITDIAWS 351 (434)
T ss_pred cCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeecceEEEeccccccceEEEeeeeeeeecceeec
Confidence 233444444444444444433 2345666667789999999998777 334688999999999
Q ss_pred CCCCEEEEEeCCCcEEE
Q 003840 774 TETGYVASASHDKFVKL 790 (792)
Q Consensus 774 pdg~~LaSgs~DG~I~I 790 (792)
+||.+|+..+.||...+
T Consensus 352 ~dg~~l~vSS~DGyCS~ 368 (434)
T KOG1009|consen 352 DDGSVLLVSSTDGFCSL 368 (434)
T ss_pred CCCcEEEEeccCCceEE
Confidence 99999999999997653
No 164
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.80 E-value=3.8e-19 Score=192.14 Aligned_cols=256 Identities=21% Similarity=0.326 Sum_probs=195.9
Q ss_pred eeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECC--------CCceeEEeccCCCCEEEEEECCCCCeEEEEeC
Q 003840 503 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTD--------TLKSKTNLEEHSSLITDVRFSPSMPRLATSSF 574 (792)
Q Consensus 503 ~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~--------t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~ 574 (792)
....+++.|.+.|..++|.+....|++++.||+|.+|++. ..+.+.+|.+|.++|.|+++.+++..+++|+.
T Consensus 285 ~ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~ 364 (577)
T KOG0642|consen 285 NIKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGI 364 (577)
T ss_pred ceeeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeecc
Confidence 3344899999999999999999999999999999999993 24577889999999999999999999999999
Q ss_pred CCcEEEEeCCCC---------CceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee---CCe--
Q 003840 575 DKTVRVWDADNP---------GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---GGT-- 640 (792)
Q Consensus 575 Dg~V~IWdl~s~---------~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~---~~~-- 640 (792)
||+|+.|++... ......+.||.+.|+.++++..... |++|+.||+|+.|+...... ..|. ...
T Consensus 365 Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~-Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~P 442 (577)
T KOG0642|consen 365 DGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDR-LLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYP 442 (577)
T ss_pred CceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccc-eeeecCCceEEeeccCCcCc-cccCCccccCCc
Confidence 999999966421 1344577899999999999998665 55999999999999877655 3332 122
Q ss_pred eEEEEecCC-CEEEEEEcCCeEEEEECCCCeEEEEecCC-------CCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCC
Q 003840 641 AQMRFQPHL-GRYLAAAAENVVSILDAETQACRLSLQGH-------TKPIDSVCWDPSGELLASVSED-SVRVWTVGSGS 711 (792)
Q Consensus 641 ~~v~~sp~~-~~lla~s~dg~I~i~D~~t~~~~~~l~~h-------~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~ 711 (792)
..+.+.... ...++...-+.-.++|.+....+..+... ...+.-|.++|.+.+.+++.+| .|+++|..++
T Consensus 443 lsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~- 521 (577)
T KOG0642|consen 443 LSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTG- 521 (577)
T ss_pred ceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccccc-
Confidence 223332221 12222222333344444444333333221 1346778899999999999999 9999999887
Q ss_pred CcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEccc
Q 003840 712 EGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAH 763 (792)
Q Consensus 712 ~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~~~~h 763 (792)
..++....|...++++++.|+|.+|++++.|+.|++|.+....++ ....|
T Consensus 522 --~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~ 572 (577)
T KOG0642|consen 522 --KILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAH 572 (577)
T ss_pred --ccchheeeccceecceeecCCCceEEeecCCceeehhhccchheeeccccc
Confidence 788888889999999999999999999999999999999877665 33344
No 165
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=3e-19 Score=189.65 Aligned_cols=291 Identities=19% Similarity=0.309 Sum_probs=226.4
Q ss_pred ceeeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEec-cCCCCEEEEEECC--CCCeEEEEeCCCc
Q 003840 501 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE-EHSSLITDVRFSP--SMPRLATSSFDKT 577 (792)
Q Consensus 501 ~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~-~h~~~V~~i~fsp--dg~~Lasgs~Dg~ 577 (792)
.+.....|..|.+.|..|.|+..|..|++|+.|..|.+||+..++.+..+. +|...|.-..|.| +...|++++.||.
T Consensus 131 r~~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgq 210 (559)
T KOG1334|consen 131 RLRLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQ 210 (559)
T ss_pred HhhhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCc
Confidence 345667789999999999999999999999999999999999988887775 7998898888988 4458999999999
Q ss_pred EEEEeCCCCCce--eEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee---------CCeeEEEEe
Q 003840 578 VRVWDADNPGYS--LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---------GGTAQMRFQ 646 (792)
Q Consensus 578 V~IWdl~s~~~~--i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~---------~~~~~v~~s 646 (792)
|++=.+...+.. ...+..|.+.|..++.-|+..+-|++|+.|+.+.-+|++.+.....+. .....++..
T Consensus 211 vr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~ 290 (559)
T KOG1334|consen 211 VRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVD 290 (559)
T ss_pred eeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecC
Confidence 999888764543 345667999999999999999999999999999999998875443321 134567788
Q ss_pred cCCC-EEEEEEcCCeEEEEECCCCe------EEEEec------CCCCCeEEEEEcCCCC-EEEEEeCCeEEEEECCCCCC
Q 003840 647 PHLG-RYLAAAAENVVSILDAETQA------CRLSLQ------GHTKPIDSVCWDPSGE-LLASVSEDSVRVWTVGSGSE 712 (792)
Q Consensus 647 p~~~-~lla~s~dg~I~i~D~~t~~------~~~~l~------~h~~~V~sv~~spdg~-~Las~s~d~I~IwDl~s~~~ 712 (792)
|... .+++++.|-.+++||.+.-. .+..+. .....|+|++|+.++. +|++..+..|++|.-..+.-
T Consensus 291 P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G 370 (559)
T KOG1334|consen 291 PRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDG 370 (559)
T ss_pred CCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccC
Confidence 8776 56777889999999987532 122222 2234699999997665 55544444899995433211
Q ss_pred --c-------ceEE-EeecCCCc--eEEEE-EeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCE
Q 003840 713 --G-------ECVH-ELSCNGNK--FHSCV-FHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGY 778 (792)
Q Consensus 713 --~-------~~i~-~~~~~~~~--i~si~-fspdg~~L~sgs~dg~I~IwDl~~~~~~-~~~~h~~~V~sl~fspdg~~ 778 (792)
. ..+. .+++|.+. |..+- |-|...|+++|+.-|.|.||+-.+++++ .+.+-...|+||.-+|--.+
T Consensus 371 ~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~Pv 450 (559)
T KOG1334|consen 371 SEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPV 450 (559)
T ss_pred CCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCch
Confidence 0 1222 25666544 55554 5788899999999999999999999988 45555558999999999999
Q ss_pred EEEEeCCCcEEEe
Q 003840 779 VASASHDKFVKLW 791 (792)
Q Consensus 779 LaSgs~DG~I~IW 791 (792)
||++|-|..||||
T Consensus 451 LAsSGid~DVKIW 463 (559)
T KOG1334|consen 451 LASSGIDHDVKIW 463 (559)
T ss_pred hhccCCccceeee
Confidence 9999999999999
No 166
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.80 E-value=9.6e-17 Score=175.79 Aligned_cols=262 Identities=13% Similarity=0.156 Sum_probs=184.1
Q ss_pred CCCCcceeccCCcceeeeeeeecCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEECC-CCce--eEEeccCCCCEEEEEEC
Q 003840 488 DAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGG-HDKKAVLWHTD-TLKS--KTNLEEHSSLITDVRFS 563 (792)
Q Consensus 488 d~~~~~~d~~~~~~~~~~~~l~~H~~~V~~lafspdg~~Lasgs-~Dg~I~vWdl~-t~~~--~~~l~~h~~~V~~i~fs 563 (792)
+..+..|++.....++.+..+.. .+.+..++|+||+++|++++ .++.|.+|+++ +++. +.... .......|+|+
T Consensus 11 ~~~I~~~~~~~~g~l~~~~~~~~-~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~ 88 (330)
T PRK11028 11 SQQIHVWNLNHEGALTLLQVVDV-PGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTD 88 (330)
T ss_pred CCCEEEEEECCCCceeeeeEEec-CCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEEC
Confidence 45667777754445556666653 46688899999999987765 47889999986 3432 22222 33456789999
Q ss_pred CCCCeEEEEeC-CCcEEEEeCCCCCce---eEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEE-----
Q 003840 564 PSMPRLATSSF-DKTVRVWDADNPGYS---LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR----- 634 (792)
Q Consensus 564 pdg~~Lasgs~-Dg~V~IWdl~s~~~~---i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~----- 634 (792)
|++++|++++. ++.|.+|++++.+.. +..+. +.....+++|+|+++.++++...++.|++||+++...+.
T Consensus 89 ~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~ 167 (330)
T PRK11028 89 HQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPA 167 (330)
T ss_pred CCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCC
Confidence 99998888765 889999999753322 22222 334567889999999888888889999999998633221
Q ss_pred --Ee--eCCeeEEEEecCCCEEEEEEc-CCeEEEEECCC--C--eEEEEecCC------CCCeEEEEEcCCCCEEEEEeC
Q 003840 635 --VF--KGGTAQMRFQPHLGRYLAAAA-ENVVSILDAET--Q--ACRLSLQGH------TKPIDSVCWDPSGELLASVSE 699 (792)
Q Consensus 635 --~~--~~~~~~v~~sp~~~~lla~s~-dg~I~i~D~~t--~--~~~~~l~~h------~~~V~sv~~spdg~~Las~s~ 699 (792)
.. ......+.|+|++.+++++.. ++.|.+||++. + +.+..+..+ ......+.|+|++++|+++..
T Consensus 168 ~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~ 247 (330)
T PRK11028 168 EVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDR 247 (330)
T ss_pred ceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecC
Confidence 11 123467899999999988877 89999999973 2 333333221 123346889999999998865
Q ss_pred C--eEEEEECCCCC-CcceEEEeecCCCceEEEEEeCCCCEEEEEEc-CCeEEEEECC
Q 003840 700 D--SVRVWTVGSGS-EGECVHELSCNGNKFHSCVFHPTYPSLLVIGC-YQSLELWNMS 753 (792)
Q Consensus 700 d--~I~IwDl~s~~-~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~-dg~I~IwDl~ 753 (792)
. .|.+|++.... ..+.+..... ......+.|+|+|++|+++.. +++|.+|+++
T Consensus 248 ~~~~I~v~~i~~~~~~~~~~~~~~~-~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 248 TASLISVFSVSEDGSVLSFEGHQPT-ETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred CCCeEEEEEEeCCCCeEEEeEEEec-cccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 3 89999996542 2223333332 234567899999999998876 7899999874
No 167
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.80 E-value=7.9e-17 Score=176.44 Aligned_cols=262 Identities=12% Similarity=0.181 Sum_probs=181.4
Q ss_pred EEEeCCCeEEEEECCC-Cc--eeEEeccCCCCEEEEEECCCCCeEEEEe-CCCcEEEEeCCCCCce--eEEecccCCCeE
Q 003840 528 ATGGHDKKAVLWHTDT-LK--SKTNLEEHSSLITDVRFSPSMPRLATSS-FDKTVRVWDADNPGYS--LRTFMGHSASVM 601 (792)
Q Consensus 528 asgs~Dg~I~vWdl~t-~~--~~~~l~~h~~~V~~i~fspdg~~Lasgs-~Dg~V~IWdl~s~~~~--i~~~~~h~~~V~ 601 (792)
++...++.|.+||+.+ ++ .+..+. +.+....++|+|++++|++++ .++.|.+|+++..+.. +... .......
T Consensus 6 ~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~-~~~~~p~ 83 (330)
T PRK11028 6 IASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAES-PLPGSPT 83 (330)
T ss_pred EEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeee-cCCCCce
Confidence 3446789999999964 33 444444 345678899999999887765 4788999999743322 2222 2334567
Q ss_pred EEEEcCCCCeEEEEEeCCCcEEEEEcCCC-e---eEEEee--CCeeEEEEecCCCEEEEEEc-CCeEEEEECCCCeEEE-
Q 003840 602 SLDFHPNKDDLICSCDGDGEIRYWSINNG-S---CTRVFK--GGTAQMRFQPHLGRYLAAAA-ENVVSILDAETQACRL- 673 (792)
Q Consensus 602 sl~fspd~~~ll~sgs~Dg~I~iwdl~~~-~---~~~~~~--~~~~~v~~sp~~~~lla~s~-dg~I~i~D~~t~~~~~- 673 (792)
.++|+|+++.++++...++.|.+|++++. . .+..+. .+...++++|++++++++.. ++.|.+||+++...+.
T Consensus 84 ~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~ 163 (330)
T PRK11028 84 HISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVA 163 (330)
T ss_pred EEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccc
Confidence 89999999988877777999999999743 2 222222 24566889999999877665 6899999997643221
Q ss_pred ------EecCCCCCeEEEEEcCCCCEEEEEeC-C-eEEEEECCCC-CCcceEEEeecC------CCceEEEEEeCCCCEE
Q 003840 674 ------SLQGHTKPIDSVCWDPSGELLASVSE-D-SVRVWTVGSG-SEGECVHELSCN------GNKFHSCVFHPTYPSL 738 (792)
Q Consensus 674 ------~l~~h~~~V~sv~~spdg~~Las~s~-d-~I~IwDl~s~-~~~~~i~~~~~~------~~~i~si~fspdg~~L 738 (792)
.+. .......++|+|+|++|+++.. + .|.+||+... ...+.+..+... ......+.|+|+++++
T Consensus 164 ~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~l 242 (330)
T PRK11028 164 QEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHL 242 (330)
T ss_pred cCCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEE
Confidence 111 1234578999999999988876 3 9999999742 122333333221 1123468899999999
Q ss_pred EEEEc-CCeEEEEECCCCc-EEEEccc---CCCeEEEEEeCCCCEEEEEeC-CCcEEEeC
Q 003840 739 LVIGC-YQSLELWNMSENK-TMTLTAH---EGLIAALAVSTETGYVASASH-DKFVKLWK 792 (792)
Q Consensus 739 ~sgs~-dg~I~IwDl~~~~-~~~~~~h---~~~V~sl~fspdg~~LaSgs~-DG~I~IWd 792 (792)
+++.. ++.|.+|++.... ...+..+ ......+.|++||++|++++. +++|.||+
T Consensus 243 yv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~ 302 (330)
T PRK11028 243 YACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYE 302 (330)
T ss_pred EEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEE
Confidence 99865 5799999986532 2222222 235668999999999998776 89999984
No 168
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.80 E-value=2.1e-18 Score=178.15 Aligned_cols=205 Identities=27% Similarity=0.437 Sum_probs=162.7
Q ss_pred ccCCCCEEEEEECCCC--CeEEEEeCCCcEEEEeCCC---------------CCceeEEecccCCCeEEEEEcCCCCeEE
Q 003840 551 EEHSSLITDVRFSPSM--PRLATSSFDKTVRVWDADN---------------PGYSLRTFMGHSASVMSLDFHPNKDDLI 613 (792)
Q Consensus 551 ~~h~~~V~~i~fspdg--~~Lasgs~Dg~V~IWdl~s---------------~~~~i~~~~~h~~~V~sl~fspd~~~ll 613 (792)
..|.+.|+.+.-.+-+ .+.++-+..|.|.|||+.. ...++.++.+|...=++|+|+|-..-.+
T Consensus 148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~L 227 (440)
T KOG0302|consen 148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRL 227 (440)
T ss_pred cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccccc
Confidence 3577888888777754 4566667899999999963 1346778888988888999998554446
Q ss_pred EEEeCCCcEEEEEcCCCeeEEEeeCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCC-C
Q 003840 614 CSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSG-E 692 (792)
Q Consensus 614 ~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg-~ 692 (792)
++|..-+.|++|...++.... . ...|.+|+..|-.++|+|.. .
T Consensus 228 lsGDc~~~I~lw~~~~g~W~v--------------------------------d----~~Pf~gH~~SVEDLqWSptE~~ 271 (440)
T KOG0302|consen 228 LSGDCVKGIHLWEPSTGSWKV--------------------------------D----QRPFTGHTKSVEDLQWSPTEDG 271 (440)
T ss_pred ccCccccceEeeeeccCceee--------------------------------c----CccccccccchhhhccCCccCc
Confidence 677777778888766543211 0 12345699999999999965 4
Q ss_pred EEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcE---E-EEcccCCCe
Q 003840 693 LLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKT---M-TLTAHEGLI 767 (792)
Q Consensus 693 ~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~---~-~~~~h~~~V 767 (792)
.|++|+.| +|+|||++.+....++.. +.|...|+.|.|+.+..+|++|+.||+++|||++..+. + .+..|..+|
T Consensus 272 vfaScS~DgsIrIWDiRs~~~~~~~~~-kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pI 350 (440)
T KOG0302|consen 272 VFASCSCDGSIRIWDIRSGPKKAAVST-KAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPI 350 (440)
T ss_pred eEEeeecCceEEEEEecCCCccceeEe-eccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCe
Confidence 88999999 999999999866666665 78888999999999999999999999999999986543 3 788999999
Q ss_pred EEEEEeC-CCCEEEEEeCCCcEEEeC
Q 003840 768 AALAVST-ETGYVASASHDKFVKLWK 792 (792)
Q Consensus 768 ~sl~fsp-dg~~LaSgs~DG~I~IWd 792 (792)
++|.|+| +...|+++|.|..|.|||
T Consensus 351 tsieW~p~e~s~iaasg~D~QitiWD 376 (440)
T KOG0302|consen 351 TSIEWHPHEDSVIAASGEDNQITIWD 376 (440)
T ss_pred eEEEeccccCceEEeccCCCcEEEEE
Confidence 9999998 456788889999999997
No 169
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.79 E-value=7.6e-18 Score=177.53 Aligned_cols=234 Identities=15% Similarity=0.328 Sum_probs=179.5
Q ss_pred EEEEEECC-------CCCeEEEEeCCCcEEEEeCCCCC--ceeEE------------------ecccCCCeEEEEEcCCC
Q 003840 557 ITDVRFSP-------SMPRLATSSFDKTVRVWDADNPG--YSLRT------------------FMGHSASVMSLDFHPNK 609 (792)
Q Consensus 557 V~~i~fsp-------dg~~Lasgs~Dg~V~IWdl~s~~--~~i~~------------------~~~h~~~V~sl~fspd~ 609 (792)
-.|+.|.. .|+++|.|+.|..|.|||++-.. .+... -.+|+..|.+++|+..-
T Consensus 176 PLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~ 255 (463)
T KOG0270|consen 176 PLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNF 255 (463)
T ss_pred chhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhcccc
Confidence 35677743 36699999999999999997311 11111 22688889999999998
Q ss_pred CeEEEEEeCCCcEEEEEcCCCeeEEEee---CCeeEEEEecCCC-EEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEE
Q 003840 610 DDLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLG-RYLAAAAENVVSILDAETQACRLSLQGHTKPIDSV 685 (792)
Q Consensus 610 ~~ll~sgs~Dg~I~iwdl~~~~~~~~~~---~~~~~v~~sp~~~-~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv 685 (792)
.++|++|+.|.+|++||+.++++..++. ..+.++.|++... .+++|+.|++|.++|.+............+.|-.+
T Consensus 256 ~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv 335 (463)
T KOG0270|consen 256 RNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKV 335 (463)
T ss_pred ceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEE
Confidence 9999999999999999999999988765 5678899999875 56778889999999999532221111244679999
Q ss_pred EEcCCCC-EEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCC-CEEEEEEcCCeEEEEECCCCcEEEEcc
Q 003840 686 CWDPSGE-LLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTY-PSLLVIGCYQSLELWNMSENKTMTLTA 762 (792)
Q Consensus 686 ~~spdg~-~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg-~~L~sgs~dg~I~IwDl~~~~~~~~~~ 762 (792)
+|.+... .++++++| +|+-+|++... +++..+..|...|.+++++..- ..+++++.|+.|++|++..........
T Consensus 336 ~w~~~se~~f~~~tddG~v~~~D~R~~~--~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~ 413 (463)
T KOG0270|consen 336 AWDPHSENSFFVSTDDGTVYYFDIRNPG--KPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKE 413 (463)
T ss_pred EecCCCceeEEEecCCceEEeeecCCCC--CceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCccccc
Confidence 9999766 44555566 99999998654 8999999999999999998865 467788999999999997765543333
Q ss_pred cC---CCeEEEEEeCCCC-EEEEEeCCCcEEEeC
Q 003840 763 HE---GLIAALAVSTETG-YVASASHDKFVKLWK 792 (792)
Q Consensus 763 h~---~~V~sl~fspdg~-~LaSgs~DG~I~IWd 792 (792)
|. +...|+++.|+-. +||.||..+.++|||
T Consensus 414 ~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd 447 (463)
T KOG0270|consen 414 HSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWD 447 (463)
T ss_pred ccccccceeecccCCCcceEEEecCccceEEEee
Confidence 33 2356667777654 677888888999997
No 170
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=2.2e-18 Score=176.37 Aligned_cols=267 Identities=17% Similarity=0.295 Sum_probs=190.3
Q ss_pred CEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECC--CCCeEEEEeCCCcEEEEeCCCCCce-eEEecccC-CCe
Q 003840 525 KLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSP--SMPRLATSSFDKTVRVWDADNPGYS-LRTFMGHS-ASV 600 (792)
Q Consensus 525 ~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fsp--dg~~Lasgs~Dg~V~IWdl~s~~~~-i~~~~~h~-~~V 600 (792)
..+|++...|.|++||..++..+..++++...++.++|.. ....+.+|+.||+|++||++...+. ...+..+. .+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 5789999999999999999999999999999999999987 4568999999999999999985543 33444555 455
Q ss_pred EEEEEcCCCCeEEEEEeC----CCcEEEEEcCCCee-EEE----eeCCeeEEEEecCCC-EEEEEEcCCeEEEEECCCCe
Q 003840 601 MSLDFHPNKDDLICSCDG----DGEIRYWSINNGSC-TRV----FKGGTAQMRFQPHLG-RYLAAAAENVVSILDAETQA 670 (792)
Q Consensus 601 ~sl~fspd~~~ll~sgs~----Dg~I~iwdl~~~~~-~~~----~~~~~~~v~~sp~~~-~lla~s~dg~I~i~D~~t~~ 670 (792)
.|++.... ..++++|.. |..|.+||++.... ++. +...+++++|+|... .|++|+.||.|.|||++...
T Consensus 121 ~~ld~nck-~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~ 199 (376)
T KOG1188|consen 121 ICLDLNCK-KNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDN 199 (376)
T ss_pred eEeeccCc-CCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCc
Confidence 66666544 457766643 67899999998765 443 456789999999875 56678889999999997652
Q ss_pred ---EEEEecCCCCCeEEEEEcCCC-CEEEEEeCC-eEEEEECCCCCCcceEEEe--e-------cCCCceEEEEEeCCCC
Q 003840 671 ---CRLSLQGHTKPIDSVCWDPSG-ELLASVSED-SVRVWTVGSGSEGECVHEL--S-------CNGNKFHSCVFHPTYP 736 (792)
Q Consensus 671 ---~~~~l~~h~~~V~sv~~spdg-~~Las~s~d-~I~IwDl~s~~~~~~i~~~--~-------~~~~~i~si~fspdg~ 736 (792)
.+.....|...|.++.|..++ +.|.+.+.. +..+|+++.+.+...+..- . .....+..+....+..
T Consensus 200 EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~ 279 (376)
T KOG1188|consen 200 EEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKD 279 (376)
T ss_pred chhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcc
Confidence 233334577889999999888 245555555 9999999877532111100 0 0111222222233455
Q ss_pred EEEEEEc-CCeEEEEECC---CCcEE----EEc-ccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003840 737 SLLVIGC-YQSLELWNMS---ENKTM----TLT-AHEGLIAALAVSTETGYVASASHDKFVKLWK 792 (792)
Q Consensus 737 ~L~sgs~-dg~I~IwDl~---~~~~~----~~~-~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd 792 (792)
.+++++. .+...++-+. ++... .+. +|...|+++.|...+.+++|||+||.|.+|+
T Consensus 280 ~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk 344 (376)
T KOG1188|consen 280 TCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWK 344 (376)
T ss_pred eEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEe
Confidence 5555555 4555555433 33222 344 4778899999998899999999999999995
No 171
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.79 E-value=9.1e-18 Score=168.01 Aligned_cols=274 Identities=22% Similarity=0.281 Sum_probs=190.0
Q ss_pred eeeeccCCCCCCCCCCCcceeccCCcceeeeeeeecCCCCeEEEEEcC-CCCEEEEEeCC-------CeEEEEECCC---
Q 003840 475 VESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSS-DGKLLATGGHD-------KKAVLWHTDT--- 543 (792)
Q Consensus 475 v~~~l~~d~~~~~d~~~~~~d~~~~~~~~~~~~l~~H~~~V~~lafsp-dg~~Lasgs~D-------g~I~vWdl~t--- 543 (792)
..+||.--...-.+.-+...+...+...-..+.|..|.+.|+.++-+| |.++|+++..+ ..+.||.+..
T Consensus 26 ~icFlvgTnslK~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~ 105 (370)
T KOG1007|consen 26 HICFLVGTNSLKEDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLG 105 (370)
T ss_pred ceEEEEeccccCCcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccC
Confidence 334444333334445556666666655556677889999999999999 55677776542 3478998753
Q ss_pred ------CceeEEec-cCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEec-----ccCCCeEEEEEcCCCCe
Q 003840 544 ------LKSKTNLE-EHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM-----GHSASVMSLDFHPNKDD 611 (792)
Q Consensus 544 ------~~~~~~l~-~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~-----~h~~~V~sl~fspd~~~ 611 (792)
.+++..+. .+-+.|.||.|.|++..|++-. |..|.+|++.+..+.+..+. .+....++-+|+|.
T Consensus 106 ~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspH--- 181 (370)
T KOG1007|consen 106 QSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPH--- 181 (370)
T ss_pred ccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCC---
Confidence 34445554 4667999999999999988876 77899999997544333222 12333444445441
Q ss_pred EEEEEeCCCcEEEEEcCCCeeEEEeeCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEec-CCCCCeEEEEEcCC
Q 003840 612 LICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQ-GHTKPIDSVCWDPS 690 (792)
Q Consensus 612 ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~-~h~~~V~sv~~spd 690 (792)
..+.-+++..|+++..||+++.+....+. +|...|..+.|+|+
T Consensus 182 ------------------------------------Hdgnqv~tt~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpn 225 (370)
T KOG1007|consen 182 ------------------------------------HDGNQVATTSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPN 225 (370)
T ss_pred ------------------------------------CccceEEEeCCCcEEEEEccchhhhcchhhhhcceeeeccCCCC
Confidence 22333344444555555555544444433 47788999999998
Q ss_pred CC-EEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCC-CEEEEEEcCCeEEEEECCC-------------
Q 003840 691 GE-LLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTY-PSLLVIGCYQSLELWNMSE------------- 754 (792)
Q Consensus 691 g~-~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg-~~L~sgs~dg~I~IwDl~~------------- 754 (792)
.. +|++|++| .|+|||.+.. ...+.++.+|...++++.|+|.. ..|++++.|..|.+|....
T Consensus 226 kq~~lvt~gDdgyvriWD~R~t--k~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~de 303 (370)
T KOG1007|consen 226 KQHILVTCGDDGYVRIWDTRKT--KFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDE 303 (370)
T ss_pred ceEEEEEcCCCccEEEEeccCC--CccccccCCCceEEEEEEecCccceEEEecCCCceeEEEecccccccccccccccc
Confidence 76 67778888 9999999854 36788999999999999999965 5678889999999986532
Q ss_pred -----------------CcEEEEcccCCCeEEEEEeC-CCCEEEEEeCCCcEEE
Q 003840 755 -----------------NKTMTLTAHEGLIAALAVST-ETGYVASASHDKFVKL 790 (792)
Q Consensus 755 -----------------~~~~~~~~h~~~V~sl~fsp-dg~~LaSgs~DG~I~I 790 (792)
+.+.++..|+..|++++|+. |--+||+-+.||+|.|
T Consensus 304 se~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviI 357 (370)
T KOG1007|consen 304 SESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVII 357 (370)
T ss_pred ccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEe
Confidence 11125667999999999987 4456788899999876
No 172
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.78 E-value=6.1e-17 Score=184.82 Aligned_cols=280 Identities=15% Similarity=0.226 Sum_probs=208.5
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccC---CCCEEEEEECC--CCCeEEEEeCCCcEEEEeCC
Q 003840 510 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEH---SSLITDVRFSP--SMPRLATSSFDKTVRVWDAD 584 (792)
Q Consensus 510 ~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h---~~~V~~i~fsp--dg~~Lasgs~Dg~V~IWdl~ 584 (792)
+.......+.|+|-...++++...-.|+|||.+.++....|..+ ...|+.+.+.. |..++++|+.||.|+||+-.
T Consensus 1062 ~n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y 1141 (1387)
T KOG1517|consen 1062 GNNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDY 1141 (1387)
T ss_pred cCCCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccc
Confidence 44446777889998889999988889999999999988887754 46789999876 45589999999999999754
Q ss_pred CCC----ceeEEeccc-------CCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCCe----eEEE-EecC
Q 003840 585 NPG----YSLRTFMGH-------SASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGT----AQMR-FQPH 648 (792)
Q Consensus 585 s~~----~~i~~~~~h-------~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~----~~v~-~sp~ 648 (792)
... +.+..+.+- .+.=.-++|.-...+|+++| +-..|+|||.....++..+.... +.+. -...
T Consensus 1142 ~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tG-d~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~ 1220 (1387)
T KOG1517|consen 1142 ADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTG-DVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVH 1220 (1387)
T ss_pred ccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecC-CeeEEEEEecccceeEeecccCCCccceeecccccC
Confidence 322 233333221 11113456776666677555 47899999999888877664332 2222 2234
Q ss_pred CCEEEEEEcCCeEEEEECCCC---eEEEEecCCCCC--eEEEEEcCCCCE-EEEEeCC-eEEEEECCCCCCcceEEEeec
Q 003840 649 LGRYLAAAAENVVSILDAETQ---ACRLSLQGHTKP--IDSVCWDPSGEL-LASVSED-SVRVWTVGSGSEGECVHELSC 721 (792)
Q Consensus 649 ~~~lla~s~dg~I~i~D~~t~---~~~~~l~~h~~~--V~sv~~spdg~~-Las~s~d-~I~IwDl~s~~~~~~i~~~~~ 721 (792)
++.+++|..||.|++||.+.. ..+...+.|... |..+.+-+.|-. |++++.+ .|++||++.... .....+..
T Consensus 1221 gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~-e~~~~iv~ 1299 (1387)
T KOG1517|consen 1221 GNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSK-ETFLTIVA 1299 (1387)
T ss_pred CceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcc-cccceeee
Confidence 688899999999999999875 356677788887 999999987764 8888888 999999998522 22222222
Q ss_pred C---CCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEcc-------cCCCeEEEEEeCCCCEEEEEeCCCcEEEe
Q 003840 722 N---GNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTA-------HEGLIAALAVSTETGYVASASHDKFVKLW 791 (792)
Q Consensus 722 ~---~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~~~~~-------h~~~V~sl~fspdg~~LaSgs~DG~I~IW 791 (792)
+ ++..+++..|++.+.|++|+. +.|+||++.......+.. ..+.+.|++|+|..-+||+|+.|.+|.||
T Consensus 1300 ~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iY 1378 (1387)
T KOG1517|consen 1300 HWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIY 1378 (1387)
T ss_pred ccccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEe
Confidence 2 235899999999999999988 999999998766543332 34578999999999999999999999998
Q ss_pred C
Q 003840 792 K 792 (792)
Q Consensus 792 d 792 (792)
.
T Consensus 1379 s 1379 (1387)
T KOG1517|consen 1379 S 1379 (1387)
T ss_pred e
Confidence 3
No 173
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.76 E-value=7.8e-17 Score=167.42 Aligned_cols=226 Identities=15% Similarity=0.280 Sum_probs=180.1
Q ss_pred EeccCCCCEEEEEECC-CCCeEEEEeCCCcEEEEeCCCCC------ceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCc
Q 003840 549 NLEEHSSLITDVRFSP-SMPRLATSSFDKTVRVWDADNPG------YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGE 621 (792)
Q Consensus 549 ~l~~h~~~V~~i~fsp-dg~~Lasgs~Dg~V~IWdl~s~~------~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~ 621 (792)
.+.+|.+.|.+++|+| +...||+|+.|.+|.||.+..++ +++..+.+|...|--+.|+|...++|++++.|.+
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 4568999999999999 55689999999999999997543 4578889999999999999999999999999999
Q ss_pred EEEEEcCCCeeEEEee--CCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCC-eEEEEEcCCCCEEEEEe
Q 003840 622 IRYWSINNGSCTRVFK--GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKP-IDSVCWDPSGELLASVS 698 (792)
Q Consensus 622 I~iwdl~~~~~~~~~~--~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~-V~sv~~spdg~~Las~s 698 (792)
|.+||+.+++.+..++ .-+.++.|+.+|..+++++.|..|+|||.++++.+..-.+|.+. -..+.|-.+|.++.+|.
T Consensus 156 v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGf 235 (472)
T KOG0303|consen 156 VSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGF 235 (472)
T ss_pred EEEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeecc
Confidence 9999999999777665 34678999999999999999999999999999999988778763 33456888899666664
Q ss_pred CC----eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEE-cCCeEEEEECCCCcEE--EE--cccCCCeEE
Q 003840 699 ED----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIG-CYQSLELWNMSENKTM--TL--TAHEGLIAA 769 (792)
Q Consensus 699 ~d----~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs-~dg~I~IwDl~~~~~~--~~--~~h~~~V~s 769 (792)
.. .+.+||-...++...+.++.. .+.|.---|.+|.+.|+.++ .|+.|+.|.+...... .+ .....+=..
T Consensus 236 sr~seRq~aLwdp~nl~eP~~~~elDt-SnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~epQRG 314 (472)
T KOG0303|consen 236 SRMSERQIALWDPNNLEEPIALQELDT-SNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSKEPQRG 314 (472)
T ss_pred ccccccceeccCcccccCcceeEEecc-CCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEecccccCCcccc
Confidence 33 699999887776655566554 45566677888888777655 5789999999887643 22 223344455
Q ss_pred EEEeCC
Q 003840 770 LAVSTE 775 (792)
Q Consensus 770 l~fspd 775 (792)
+.|-|.
T Consensus 315 ~g~mPK 320 (472)
T KOG0303|consen 315 MGFMPK 320 (472)
T ss_pred cccccc
Confidence 555554
No 174
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.75 E-value=6.6e-17 Score=162.08 Aligned_cols=238 Identities=19% Similarity=0.363 Sum_probs=178.5
Q ss_pred ecCCCCeEEEEEcCCCC-----EEEEEeCCCeEEEEECCCCceeEE----e-----ccCCCCEEEEEECC-CCCeEEEEe
Q 003840 509 RASTSKVICCHFSSDGK-----LLATGGHDKKAVLWHTDTLKSKTN----L-----EEHSSLITDVRFSP-SMPRLATSS 573 (792)
Q Consensus 509 ~~H~~~V~~lafspdg~-----~Lasgs~Dg~I~vWdl~t~~~~~~----l-----~~h~~~V~~i~fsp-dg~~Lasgs 573 (792)
..|.-+++.+-|.|+.+ +||+++ ..++||.+...+.... + ..+..++++..|+. +-++|.+++
T Consensus 93 fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSS 170 (364)
T KOG0290|consen 93 FDHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSS 170 (364)
T ss_pred CCCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeec
Confidence 46888999999999763 566654 4799999874322111 1 24678899999988 667999999
Q ss_pred CCCcEEEEeCCCC--CceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEe-eC-----CeeEEEE
Q 003840 574 FDKTVRVWDADNP--GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF-KG-----GTAQMRF 645 (792)
Q Consensus 574 ~Dg~V~IWdl~s~--~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~-~~-----~~~~v~~ 645 (792)
-|-++.|||++++ +.....+..|..+|.+|+|...+..+|++++.||.||+||++..+....+ +. +...++|
T Consensus 171 iDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLsw 250 (364)
T KOG0290|consen 171 IDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSW 250 (364)
T ss_pred ccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeecc
Confidence 9999999999983 33456778999999999999999999999999999999999987655443 32 2345677
Q ss_pred ecCCCEEEEE-Ec-CCeEEEEECCCC-eEEEEecCCCCCeEEEEEcCC-CCEEEEEeCC-eEEEEECCCCCC---cceEE
Q 003840 646 QPHLGRYLAA-AA-ENVVSILDAETQ-ACRLSLQGHTKPIDSVCWDPS-GELLASVSED-SVRVWTVGSGSE---GECVH 717 (792)
Q Consensus 646 sp~~~~lla~-s~-dg~I~i~D~~t~-~~~~~l~~h~~~V~sv~~spd-g~~Las~s~d-~I~IwDl~s~~~---~~~i~ 717 (792)
++.+-++++. .. ...|.|.|++.. .++..+.+|.+.|+.|+|.|. ...|+++++| .+.|||+..... ..++.
T Consensus 251 nkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPil 330 (364)
T KOG0290|consen 251 NKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPIL 330 (364)
T ss_pred CcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchh
Confidence 7766555543 33 468999999986 678899999999999999995 5689999999 899999975422 11222
Q ss_pred EeecCCCceEEEEEeCCC-CEEEEEEcCCeEEEE
Q 003840 718 ELSCNGNKFHSCVFHPTY-PSLLVIGCYQSLELW 750 (792)
Q Consensus 718 ~~~~~~~~i~si~fspdg-~~L~sgs~dg~I~Iw 750 (792)
.+. .+..|..+.|++.. .+|+++ .++++.|.
T Consensus 331 ay~-a~~EVNqi~Ws~~~~Dwiai~-~~kkleiL 362 (364)
T KOG0290|consen 331 AYT-AGGEVNQIQWSSSQPDWIAIC-FGKKLEIL 362 (364)
T ss_pred hhh-ccceeeeeeecccCCCEEEEE-ecCeeeEE
Confidence 222 56789999999754 445444 44555543
No 175
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.75 E-value=1.8e-16 Score=160.96 Aligned_cols=229 Identities=20% Similarity=0.322 Sum_probs=179.4
Q ss_pred CCeEEEEEc-------CCCCEEEEEeCCCeEEEEECCCCceeEEecc--CCC---CEEEEEECCCCCeEEEEeCCCcEEE
Q 003840 513 SKVICCHFS-------SDGKLLATGGHDKKAVLWHTDTLKSKTNLEE--HSS---LITDVRFSPSMPRLATSSFDKTVRV 580 (792)
Q Consensus 513 ~~V~~lafs-------pdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~--h~~---~V~~i~fspdg~~Lasgs~Dg~V~I 580 (792)
..|+..+|- |+..++|+.+.+.-|.+||.-+|+....+.. |.+ .-.+++|+|||..|++| +...|+|
T Consensus 105 ~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirv 183 (406)
T KOG2919|consen 105 ETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRV 183 (406)
T ss_pred CEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEE
Confidence 447777775 6778999999999999999999998887764 433 34689999999998876 5667999
Q ss_pred EeCCCCCcee--EEec-----ccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEe---eCCeeEEEEecCCC
Q 003840 581 WDADNPGYSL--RTFM-----GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF---KGGTAQMRFQPHLG 650 (792)
Q Consensus 581 Wdl~s~~~~i--~~~~-----~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~---~~~~~~v~~sp~~~ 650 (792)
||+..++... .... +..+.|.+++|+|....+++.++....+-||.-.....+..+ .++++.++|.++++
T Consensus 184 Fdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn 263 (406)
T KOG2919|consen 184 FDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGN 263 (406)
T ss_pred eeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcC
Confidence 9996545322 2222 236789999999998889999999999999988877766654 56789999999999
Q ss_pred EEEEEEc-CCeEEEEECCCC-eEEEEecCCCC-CeE--EEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCC
Q 003840 651 RYLAAAA-ENVVSILDAETQ-ACRLSLQGHTK-PID--SVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGN 724 (792)
Q Consensus 651 ~lla~s~-dg~I~i~D~~t~-~~~~~l~~h~~-~V~--sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~ 724 (792)
++++|+. +..|.+||++.. .++..+..|.. .-. -....|++++|++|+.+ .|++||+.... ..+..+..+..
T Consensus 264 ~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~g--n~~sv~~~~sd 341 (406)
T KOG2919|consen 264 KLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLG--NEVSVTGNYSD 341 (406)
T ss_pred eecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCC--Ccccccccccc
Confidence 9999987 789999999875 56677776655 222 34556899999999888 99999998632 34566667778
Q ss_pred ceEEEEEeCCCCEEEEEEcC
Q 003840 725 KFHSCVFHPTYPSLLVIGCY 744 (792)
Q Consensus 725 ~i~si~fspdg~~L~sgs~d 744 (792)
.+..++++|--..+++++..
T Consensus 342 ~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 342 TVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred cccceecCcccceeeeccCc
Confidence 89999999997777766643
No 176
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.75 E-value=3.5e-16 Score=181.44 Aligned_cols=292 Identities=19% Similarity=0.228 Sum_probs=208.4
Q ss_pred ceeeeeeeecCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEECCCC-------ceeEEeccCCCCEEEEEECCCCCeEEEE
Q 003840 501 SFKEANSVRASTSKVICCHFSSDG-KLLATGGHDKKAVLWHTDTL-------KSKTNLEEHSSLITDVRFSPSMPRLATS 572 (792)
Q Consensus 501 ~~~~~~~l~~H~~~V~~lafspdg-~~Lasgs~Dg~I~vWdl~t~-------~~~~~l~~h~~~V~~i~fspdg~~Lasg 572 (792)
....+..+..|...|..++.+++. .++++|+.||+|+|||+... +...++......+.++.+.+.+..+|++
T Consensus 1037 ~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~ 1116 (1431)
T KOG1240|consen 1037 RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVS 1116 (1431)
T ss_pred cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEE
Confidence 345788899999999999998755 89999999999999998532 2333444467889999999999999999
Q ss_pred eCCCcEEEEeCCCCC--c----eeEEecc--cCCCeEEEEEcCCCC-eEEEEEeCCCcEEEEEcCCCeeEEEee-----C
Q 003840 573 SFDKTVRVWDADNPG--Y----SLRTFMG--HSASVMSLDFHPNKD-DLICSCDGDGEIRYWSINNGSCTRVFK-----G 638 (792)
Q Consensus 573 s~Dg~V~IWdl~s~~--~----~i~~~~~--h~~~V~sl~fspd~~-~ll~sgs~Dg~I~iwdl~~~~~~~~~~-----~ 638 (792)
+.||.|++.+++... + ..+.... ....|..-+|..... .+++.+...+.|..||++.......++ +
T Consensus 1117 t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG 1196 (1431)
T KOG1240|consen 1117 TKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHG 1196 (1431)
T ss_pred cCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCcccc
Confidence 999999999997511 1 1111111 122233344443333 367788888999999999877655443 5
Q ss_pred CeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecC-CCCCeEEEEEcCCC---CEEEEEeC-C--eEEEEECCCCC
Q 003840 639 GTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQG-HTKPIDSVCWDPSG---ELLASVSE-D--SVRVWTVGSGS 711 (792)
Q Consensus 639 ~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~-h~~~V~sv~~spdg---~~Las~s~-d--~I~IwDl~s~~ 711 (792)
.+++++.+|.+.+++.|+..|.+.+||++-+.++..+.. +..+|+.++.+|-. .+.++++. . .|.+|++.++.
T Consensus 1197 ~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~ 1276 (1431)
T KOG1240|consen 1197 LVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGL 1276 (1431)
T ss_pred ceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCc
Confidence 678899999999999999999999999999888877653 55778888777632 45555554 3 89999998873
Q ss_pred CcceEEEe----------e------cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-----------------
Q 003840 712 EGECVHEL----------S------CNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM----------------- 758 (792)
Q Consensus 712 ~~~~i~~~----------~------~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~----------------- 758 (792)
....+..- . .+.-....+++...+..+++|+.|..|+.||....+..
T Consensus 1277 ~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~~~s 1356 (1431)
T KOG1240|consen 1277 RQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTNSES 1356 (1431)
T ss_pred ceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccccccccCccccccccchh
Confidence 32222111 0 01112334556666778999999999999998542111
Q ss_pred ----------------------------------------EEcccCCCeEEEEEeCC-CCEEEEEeCCCcEEEeC
Q 003840 759 ----------------------------------------TLTAHEGLIAALAVSTE-TGYVASASHDKFVKLWK 792 (792)
Q Consensus 759 ----------------------------------------~~~~h~~~V~sl~fspd-g~~LaSgs~DG~I~IWd 792 (792)
.-..|...|+++++... -.+|++++.||.|+||+
T Consensus 1357 ~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1357 YDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred ccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEecCCCeeeecC
Confidence 00126667888877553 35899999999999996
No 177
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.75 E-value=3.7e-16 Score=158.00 Aligned_cols=255 Identities=23% Similarity=0.343 Sum_probs=180.5
Q ss_pred CCCCCCCCccee-ccCCcceeeeeeeecCCCCeEEEEEcC--CCCEEEEEeCCCeEEEEECC---------CCceeEEec
Q 003840 484 TDPRDAGGRGMD-VSQGFSFKEANSVRASTSKVICCHFSS--DGKLLATGGHDKKAVLWHTD---------TLKSKTNLE 551 (792)
Q Consensus 484 ~~~~d~~~~~~d-~~~~~~~~~~~~l~~H~~~V~~lafsp--dg~~Lasgs~Dg~I~vWdl~---------t~~~~~~l~ 551 (792)
+...|..+++|| ......|......+.|.+.|..+.|.+ -|..+|+++.|++|.||.-. ......++.
T Consensus 30 tCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~ 109 (361)
T KOG2445|consen 30 TCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLV 109 (361)
T ss_pred eccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEee
Confidence 345566777888 445577888899999999999999976 68999999999999999752 223455677
Q ss_pred cCCCCEEEEEECCC--CCeEEEEeCCCcEEEEeCCCCCcee-----EEe-------cccCCCeEEEEEcCCC--CeEEEE
Q 003840 552 EHSSLITDVRFSPS--MPRLATSSFDKTVRVWDADNPGYSL-----RTF-------MGHSASVMSLDFHPNK--DDLICS 615 (792)
Q Consensus 552 ~h~~~V~~i~fspd--g~~Lasgs~Dg~V~IWdl~s~~~~i-----~~~-------~~h~~~V~sl~fspd~--~~ll~s 615 (792)
.....|++|.|.|. |-.||+++.||.||||+.-+..... ..+ ..+.....|+.|++.. .-+|+.
T Consensus 110 DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAv 189 (361)
T KOG2445|consen 110 DSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAV 189 (361)
T ss_pred cCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEE
Confidence 78899999999994 6689999999999999987633211 111 1345566677776542 224545
Q ss_pred EeCC-----CcEEEEEcCCCeeEEEeeCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCC
Q 003840 616 CDGD-----GEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPS 690 (792)
Q Consensus 616 gs~D-----g~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spd 690 (792)
|+.+ +.++||..... .+....+.++.+|..+|+.|+|.|+
T Consensus 190 gs~e~a~~~~~~~Iye~~e~-----------------------------------~rKw~kva~L~d~~dpI~di~wAPn 234 (361)
T KOG2445|consen 190 GSDEDAPHLNKVKIYEYNEN-----------------------------------GRKWLKVAELPDHTDPIRDISWAPN 234 (361)
T ss_pred EcccCCccccceEEEEecCC-----------------------------------cceeeeehhcCCCCCcceeeeeccc
Confidence 4433 23333332211 0112344566789999999999995
Q ss_pred ----CCEEEEEeCCeEEEEECCCCC-----------------CcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEE
Q 003840 691 ----GELLASVSEDSVRVWTVGSGS-----------------EGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLEL 749 (792)
Q Consensus 691 ----g~~Las~s~d~I~IwDl~s~~-----------------~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~I 749 (792)
-.+||+++.|.|+||.++... ..+.+..+..|.+.+..+.|.-.|..|++.+.||.|++
T Consensus 235 ~Gr~y~~lAvA~kDgv~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRL 314 (361)
T KOG2445|consen 235 IGRSYHLLAVATKDGVRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRL 314 (361)
T ss_pred cCCceeeEEEeecCcEEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeee
Confidence 247888888889999987311 23456678889999999999999999999999999999
Q ss_pred EECCC---CcEEEEcccCCCeEEEEEe
Q 003840 750 WNMSE---NKTMTLTAHEGLIAALAVS 773 (792)
Q Consensus 750 wDl~~---~~~~~~~~h~~~V~sl~fs 773 (792)
|...- .++......++.|....|+
T Consensus 315 Wkany~n~~kC~sv~~~e~~~~~~~~~ 341 (361)
T KOG2445|consen 315 WKANYNNLWKCTSVLKAEGSVTKPDFS 341 (361)
T ss_pred hhhhhhhhheeeeEEeccCCCCCcccc
Confidence 97543 2344444444445444443
No 178
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.75 E-value=6.1e-17 Score=164.87 Aligned_cols=240 Identities=20% Similarity=0.339 Sum_probs=180.6
Q ss_pred cCCCCeEEEEEcCCC----CEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCC-CeEEEEeCCCcEEEEeCC
Q 003840 510 ASTSKVICCHFSSDG----KLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSM-PRLATSSFDKTVRVWDAD 584 (792)
Q Consensus 510 ~H~~~V~~lafspdg----~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg-~~Lasgs~Dg~V~IWdl~ 584 (792)
.|....+.++|+-|- -+||+|+.-|.|+|.|+.++.+...+.+|...|+.|.|.|+. .+|++++.|..|++|++.
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~ 166 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQ 166 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEecc
Confidence 356667778887643 389999999999999999999999999999999999999965 589999999999999999
Q ss_pred CCCceeEEe---cccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee------------------------
Q 003840 585 NPGYSLRTF---MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK------------------------ 637 (792)
Q Consensus 585 s~~~~i~~~---~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~------------------------ 637 (792)
+ ..++..| .+|.+.|.+++|+.++. .|++|+.|..|++|++...+....++
T Consensus 167 ~-~~Cv~VfGG~egHrdeVLSvD~~~~gd-~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~f 244 (385)
T KOG1034|consen 167 T-DVCVAVFGGVEGHRDEVLSVDFSLDGD-RIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDF 244 (385)
T ss_pred C-CeEEEEecccccccCcEEEEEEcCCCC-eeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccc
Confidence 8 6666665 47999999999999988 56699999999999998443211110
Q ss_pred -------CCeeEEEEecCCCEEEEEEcCCeEEEEEC-CCC-------------eEEEEecCCCCCeEEE--EEcCCCCEE
Q 003840 638 -------GGTAQMRFQPHLGRYLAAAAENVVSILDA-ETQ-------------ACRLSLQGHTKPIDSV--CWDPSGELL 694 (792)
Q Consensus 638 -------~~~~~v~~sp~~~~lla~s~dg~I~i~D~-~t~-------------~~~~~l~~h~~~V~sv--~~spdg~~L 694 (792)
..+.|++| -++++++-+.++.|..|.. +-. ..+.++.-....|+-| +|++-.+.|
T Consensus 245 st~diHrnyVDCvrw--~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~l 322 (385)
T KOG1034|consen 245 STTDIHRNYVDCVRW--FGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKML 322 (385)
T ss_pred cccccccchHHHHHH--HhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHH
Confidence 00111112 1367788888999999987 111 1222333333444444 556678899
Q ss_pred EEEeCC-eEEEEECCCCCCcceE-EEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 003840 695 ASVSED-SVRVWTVGSGSEGECV-HELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMS 753 (792)
Q Consensus 695 as~s~d-~I~IwDl~s~~~~~~i-~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~ 753 (792)
|.|... .|++||++..+...+. .........|...+|+.|+..|+..+.|++|.-||..
T Consensus 323 a~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 323 ALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred hhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 999888 9999999876553222 2222345568999999999999999999999999853
No 179
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.75 E-value=4.3e-16 Score=176.71 Aligned_cols=257 Identities=17% Similarity=0.275 Sum_probs=186.4
Q ss_pred CeEEEEECCCCceeEEeccCCCCEEEEEECC-CCCeEEEEeCCCcEEEEeCCCCCce-----eEEecccCCCeEEEEEcC
Q 003840 534 KKAVLWHTDTLKSKTNLEEHSSLITDVRFSP-SMPRLATSSFDKTVRVWDADNPGYS-----LRTFMGHSASVMSLDFHP 607 (792)
Q Consensus 534 g~I~vWdl~t~~~~~~l~~h~~~V~~i~fsp-dg~~Lasgs~Dg~V~IWdl~s~~~~-----i~~~~~h~~~V~sl~fsp 607 (792)
+.+.||+++........-.....|+|++|+| +..+||.|+++|.|.+||++..... -.....|..+|+.+.|..
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~ 301 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQ 301 (555)
T ss_pred ceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEec
Confidence 4799999987643333334667899999999 5668888999999999999975542 122346889999999976
Q ss_pred CCCe-EEEEEeCCCcEEEEEcCCCeeE-E-----E---------eeCCeeEEEEecCC-CEEEEEEcCCeEEEEECCCC-
Q 003840 608 NKDD-LICSCDGDGEIRYWSINNGSCT-R-----V---------FKGGTAQMRFQPHL-GRYLAAAAENVVSILDAETQ- 669 (792)
Q Consensus 608 d~~~-ll~sgs~Dg~I~iwdl~~~~~~-~-----~---------~~~~~~~v~~sp~~-~~lla~s~dg~I~i~D~~t~- 669 (792)
+... =|++++.||.|+.|+++..... . . -...+..+.|.+.. ..+++|+.+|.|..-+....
T Consensus 302 ~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~ 381 (555)
T KOG1587|consen 302 NEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYT 381 (555)
T ss_pred cCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCc
Confidence 5333 2458888999999998754331 0 0 11245667887765 46788888998887443322
Q ss_pred -------eEEEEecCCCCCeEEEEEcCCCC-EEEEEeCCeEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCE-EEE
Q 003840 670 -------ACRLSLQGHTKPIDSVCWDPSGE-LLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPS-LLV 740 (792)
Q Consensus 670 -------~~~~~l~~h~~~V~sv~~spdg~-~Las~s~d~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~-L~s 740 (792)
+....+..|.++|+++.++|-+. +|.++++.+|+||.-.. ...++..+..+...+++++|||.... |++
T Consensus 382 ~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~--~~~Pl~~~~~~~~~v~~vaWSptrpavF~~ 459 (555)
T KOG1587|consen 382 PAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDV--IASPLLSLDSSPDYVTDVAWSPTRPAVFAT 459 (555)
T ss_pred ccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccC--CCCcchhhhhccceeeeeEEcCcCceEEEE
Confidence 12335566899999999999766 44455533999999762 22566666677777999999998765 555
Q ss_pred EEcCCeEEEEECCCCcEE---EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003840 741 IGCYQSLELWNMSENKTM---TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 792 (792)
Q Consensus 741 gs~dg~I~IwDl~~~~~~---~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd 792 (792)
+..+|.|.|||+...... ....+....+.+.|+++|++|++|...|.|+||+
T Consensus 460 ~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~ 514 (555)
T KOG1587|consen 460 VDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILK 514 (555)
T ss_pred EcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEE
Confidence 666899999999654432 3444466777888899999999999999999985
No 180
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.74 E-value=1.6e-16 Score=173.48 Aligned_cols=268 Identities=15% Similarity=0.228 Sum_probs=199.5
Q ss_pred CcceEEEEeCCCeeeecCCC--eeEeCCCcchhhcccccccCCCCCCceeeeccCCCCCCCCCCCcceeccCCcceeeee
Q 003840 429 SKPLMMFGTDGAGTLTSPSN--QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEAN 506 (792)
Q Consensus 429 ~k~~l~~s~Dg~~~~ss~s~--~lWD~~tg~~~~~~~~~~~~g~~d~~v~~~l~~d~~~~~d~~~~~~d~~~~~~~~~~~ 506 (792)
...-++|-|||.-++.+..+ .|||+.+|.+ +.
T Consensus 14 ci~d~afkPDGsqL~lAAg~rlliyD~ndG~l----------------------------------------------lq 47 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGSRLLVYDTSDGTL----------------------------------------------LQ 47 (1081)
T ss_pred chheeEECCCCceEEEecCCEEEEEeCCCccc----------------------------------------------cc
Confidence 44568999999988776666 4477766543 35
Q ss_pred eeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCC
Q 003840 507 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP 586 (792)
Q Consensus 507 ~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~ 586 (792)
++++|.+.|+|++|+.||+++|+|+.|+.|.||+-.-...++ ..|.+.|.|+.|+|-...|++++-.. .-+|..+.
T Consensus 48 tLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~Lk--YSH~D~IQCMsFNP~~h~LasCsLsd-FglWS~~q- 123 (1081)
T KOG1538|consen 48 PLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILK--YSHNDAIQCMSFNPITHQLASCSLSD-FGLWSPEQ- 123 (1081)
T ss_pred ccccccceEEEEEEccCCceeccCCCceeEEEecccccceee--eccCCeeeEeecCchHHHhhhcchhh-ccccChhh-
Confidence 688999999999999999999999999999999854322221 25999999999999998999987654 67898775
Q ss_pred CceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEe-----eCCeeEEEEecCCC-----EEEEEE
Q 003840 587 GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF-----KGGTAQMRFQPHLG-----RYLAAA 656 (792)
Q Consensus 587 ~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~-----~~~~~~v~~sp~~~-----~lla~s 656 (792)
+.+...+ ....|.+++|..||. +++.|-.||+|.+-+-...+.++.- ..++..++|+|..+ .+.+..
T Consensus 124 -K~V~K~k-ss~R~~~CsWtnDGq-ylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~D 200 (1081)
T KOG1538|consen 124 -KSVSKHK-SSSRIICCSWTNDGQ-YLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVAD 200 (1081)
T ss_pred -hhHHhhh-hheeEEEeeecCCCc-EEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEe
Confidence 2222221 345688999999976 5668889999999876554444433 24577899998754 345555
Q ss_pred cCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCC
Q 003840 657 AENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTY 735 (792)
Q Consensus 657 ~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg 735 (792)
...++.+|.+.. +.+..-+.-.-.-.|+.+.++|+|++.|+.| .+.+|.-+ ...+.++...+.+|+++...|++
T Consensus 201 W~qTLSFy~LsG-~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~----GvrLGTvg~~D~WIWtV~~~PNs 275 (1081)
T KOG1538|consen 201 WGQTLSFYQLSG-KQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTRD----GVRLGTVGEQDSWIWTVQAKPNS 275 (1081)
T ss_pred ccceeEEEEecc-eeecccccCCCCchhheeccCCcEEEEccCCCceEEEeec----CeEEeeccccceeEEEEEEccCC
Confidence 566777766643 3332222233345789999999999999988 78888642 25666666678899999999999
Q ss_pred CEEEEEEcCCeEEEEECCC
Q 003840 736 PSLLVIGCYQSLELWNMSE 754 (792)
Q Consensus 736 ~~L~sgs~dg~I~IwDl~~ 754 (792)
.++++|+.||+|..|++-.
T Consensus 276 Q~v~~GCqDGTiACyNl~f 294 (1081)
T KOG1538|consen 276 QYVVVGCQDGTIACYNLIF 294 (1081)
T ss_pred ceEEEEEccCeeehhhhHH
Confidence 9999999999999998743
No 181
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.74 E-value=2e-17 Score=179.04 Aligned_cols=245 Identities=21% Similarity=0.285 Sum_probs=178.6
Q ss_pred eeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCC-------CCceeEEecccCCCeEEEEEcCCCCeEEEEEeC
Q 003840 546 SKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN-------PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDG 618 (792)
Q Consensus 546 ~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s-------~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~ 618 (792)
...++..|...|+.+.|.+....|++++.||+|.+|++.. .-+.+.+|.+|.++|.|+++.+++..+ ++|+-
T Consensus 286 ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~-ysgg~ 364 (577)
T KOG0642|consen 286 IKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHC-YSGGI 364 (577)
T ss_pred eeeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEE-Eeecc
Confidence 3447778999999999999999999999999999999932 125678999999999999999987654 59999
Q ss_pred CCcEEEEEcCCCe----------eEEEe---eCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecC--CCCCeE
Q 003840 619 DGEIRYWSINNGS----------CTRVF---KGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQG--HTKPID 683 (792)
Q Consensus 619 Dg~I~iwdl~~~~----------~~~~~---~~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~--h~~~V~ 683 (792)
||+|+.|++.... ....+ .+.+..++++.....|+.++.||+|++|+.....+ .+|.. ..+.-.
T Consensus 365 Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Pl 443 (577)
T KOG0642|consen 365 DGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPL 443 (577)
T ss_pred CceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcc
Confidence 9999999664211 11122 33455678999999999999999999999877655 33332 122233
Q ss_pred EEEEcCCCCEEEEEeCC--eEEEEECCCCCCcceEEEee----cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcE
Q 003840 684 SVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHELS----CNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKT 757 (792)
Q Consensus 684 sv~~spdg~~Las~s~d--~I~IwDl~s~~~~~~i~~~~----~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~ 757 (792)
++.+-...-.+..++.. .--++++........+.... .....+..+.++|...+.+++..|+.|+++|..++++
T Consensus 444 svd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~ 523 (577)
T KOG0642|consen 444 SVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKI 523 (577)
T ss_pred eEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccccccc
Confidence 45443322112222211 22223332221111111111 1124577889999999999999999999999999998
Q ss_pred E-EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003840 758 M-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 792 (792)
Q Consensus 758 ~-~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd 792 (792)
+ ...+|...|+++++.|+|-+|++++.||.|++|+
T Consensus 524 l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~k 559 (577)
T KOG0642|consen 524 LHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWK 559 (577)
T ss_pred chheeeccceecceeecCCCceEEeecCCceeehhh
Confidence 8 7889999999999999999999999999999995
No 182
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.74 E-value=1e-16 Score=166.60 Aligned_cols=200 Identities=19% Similarity=0.315 Sum_probs=160.3
Q ss_pred eeeecCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCC-------ceeEEeccCCCCEEEEEECCC-CCeEEEEeCCC
Q 003840 506 NSVRASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTDTL-------KSKTNLEEHSSLITDVRFSPS-MPRLATSSFDK 576 (792)
Q Consensus 506 ~~l~~H~~~V~~lafsp-dg~~Lasgs~Dg~I~vWdl~t~-------~~~~~l~~h~~~V~~i~fspd-g~~Lasgs~Dg 576 (792)
-.+.||+++|..++|+| +...||+|+.|.+|.||.+... +.+..|.+|...|--|.|+|. .+.|++++.|.
T Consensus 75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn 154 (472)
T KOG0303|consen 75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDN 154 (472)
T ss_pred CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCc
Confidence 34679999999999999 5678999999999999998532 557788999999999999995 45899999999
Q ss_pred cEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCC----eeEEEEecCCCEE
Q 003840 577 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG----TAQMRFQPHLGRY 652 (792)
Q Consensus 577 ~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~----~~~v~~sp~~~~l 652 (792)
+|.|||+.+ ++.+.++. |...|++++|+.+|. ++++.+.|..|||||.++++.+..-..+ ...+.|..++. +
T Consensus 155 ~v~iWnv~t-geali~l~-hpd~i~S~sfn~dGs-~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~-i 230 (472)
T KOG0303|consen 155 TVSIWNVGT-GEALITLD-HPDMVYSMSFNRDGS-LLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGK-I 230 (472)
T ss_pred eEEEEeccC-CceeeecC-CCCeEEEEEeccCCc-eeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCc-e
Confidence 999999998 55566666 999999999999986 6679999999999999999988765332 34467777777 5
Q ss_pred EEEEc----CCeEEEEECCCCeE---EEEecCCCCCeEEEEEcCCCCEEEEEeCC--eEEEEECCCC
Q 003840 653 LAAAA----ENVVSILDAETQAC---RLSLQGHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSG 710 (792)
Q Consensus 653 la~s~----dg~I~i~D~~t~~~---~~~l~~h~~~V~sv~~spdg~~Las~s~d--~I~IwDl~s~ 710 (792)
++.+. +..+.+||.++... ..++. ....|.---|++|..+|+.++.+ .|+.|.+...
T Consensus 231 ~tTGfsr~seRq~aLwdp~nl~eP~~~~elD-tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d 296 (472)
T KOG0303|consen 231 FTTGFSRMSERQIALWDPNNLEEPIALQELD-TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNE 296 (472)
T ss_pred eeeccccccccceeccCcccccCcceeEEec-cCCceEEeeecCCCCEEEEEecCCcceEEEEecCC
Confidence 55443 67899999876532 23333 33456666688999988877765 8999999764
No 183
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.73 E-value=3.4e-15 Score=154.68 Aligned_cols=231 Identities=17% Similarity=0.295 Sum_probs=173.6
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCC--CcEEEEeCCCCCce
Q 003840 512 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD--KTVRVWDADNPGYS 589 (792)
Q Consensus 512 ~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~D--g~V~IWdl~s~~~~ 589 (792)
...+..+.|+.|...|..|+.|| .++|+.+..............|..+-|+.. ++|..+.+ ..++++++.. +..
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSSS--LvaiV~~~qpr~Lkv~~~Kk-~~~ 80 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSSS--LVAIVSIKQPRKLKVVHFKK-KTT 80 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecccc--eeEEEecCCCceEEEEEccc-Cce
Confidence 45678888999999999999887 577877765553333344455666677654 55555544 3488999886 444
Q ss_pred eEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCC----eeEEEEecCC--CEEEEEEc--CCeE
Q 003840 590 LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG----TAQMRFQPHL--GRYLAAAA--ENVV 661 (792)
Q Consensus 590 i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~----~~~v~~sp~~--~~lla~s~--dg~I 661 (792)
+..+. ....|.++.++.+ +++ ++- ...|+|||+++.+.+.++... ...++++++. .+++.-+. .|.|
T Consensus 81 ICe~~-fpt~IL~VrmNr~--RLv-V~L-ee~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV 155 (391)
T KOG2110|consen 81 ICEIF-FPTSILAVRMNRK--RLV-VCL-EESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDV 155 (391)
T ss_pred EEEEe-cCCceEEEEEccc--eEE-EEE-cccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceE
Confidence 44433 4567999999854 444 444 344999999999998876532 2345565554 36655433 6899
Q ss_pred EEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC--eEEEEECCCCCCcceEEEeecC--CCceEEEEEeCCCCE
Q 003840 662 SILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSCN--GNKFHSCVFHPTYPS 737 (792)
Q Consensus 662 ~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d--~I~IwDl~s~~~~~~i~~~~~~--~~~i~si~fspdg~~ 737 (792)
.+||+.+.+.+..+..|++.+-+++|+++|.+||++++. .||||.+.++ ..+.++.-. ...|.+++|++++.+
T Consensus 156 ~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G---~kl~eFRRG~~~~~IySL~Fs~ds~~ 232 (391)
T KOG2110|consen 156 VLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEG---QKLYEFRRGTYPVSIYSLSFSPDSQF 232 (391)
T ss_pred EEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCc---cEeeeeeCCceeeEEEEEEECCCCCe
Confidence 999999999999999999999999999999999999988 7999999887 555555433 345899999999999
Q ss_pred EEEEEcCCeEEEEECCC
Q 003840 738 LLVIGCYQSLELWNMSE 754 (792)
Q Consensus 738 L~sgs~dg~I~IwDl~~ 754 (792)
|++.+..++|+||.+++
T Consensus 233 L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 233 LAASSNTETVHIFKLEK 249 (391)
T ss_pred EEEecCCCeEEEEEecc
Confidence 99999999999998864
No 184
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.73 E-value=1.2e-16 Score=171.02 Aligned_cols=259 Identities=17% Similarity=0.281 Sum_probs=190.7
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEE-CC-------CCCeEEEEeCCCcEEEE
Q 003840 510 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRF-SP-------SMPRLATSSFDKTVRVW 581 (792)
Q Consensus 510 ~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~f-sp-------dg~~Lasgs~Dg~V~IW 581 (792)
.|...|.|+.|+.....+.+++ |..+.+|...+......+.-....|....+ -+ ....|+.++.||.+.|.
T Consensus 12 r~~e~vc~v~w~~~eei~~~~d-Dh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il 90 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSD-DHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVIL 90 (737)
T ss_pred ccceeEEeecccccceEEEecc-CceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEe
Confidence 4666778999998887776665 555555543333323222222222222211 11 23478999999999888
Q ss_pred eCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCee---EEEeeCCeeEEEEecCCCEEEEEEcC
Q 003840 582 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC---TRVFKGGTAQMRFQPHLGRYLAAAAE 658 (792)
Q Consensus 582 dl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~---~~~~~~~~~~v~~sp~~~~lla~s~d 658 (792)
+-. ++.-+.+..|.+.|.+-.|+|+|.-++ ++++||.|++|.-. |.. +..+...+.|++|.|+.+.++.+. .
T Consensus 91 ~k~--~rVE~sv~AH~~A~~~gRW~~dGtgLl-t~GEDG~iKiWSrs-GMLRStl~Q~~~~v~c~~W~p~S~~vl~c~-g 165 (737)
T KOG1524|consen 91 NKS--ARVERSISAHAAAISSGRWSPDGAGLL-TAGEDGVIKIWSRS-GMLRSTVVQNEESIRCARWAPNSNSIVFCQ-G 165 (737)
T ss_pred ccc--chhhhhhhhhhhhhhhcccCCCCceee-eecCCceEEEEecc-chHHHHHhhcCceeEEEEECCCCCceEEec-C
Confidence 764 566677889999999999999998776 88999999999854 322 233567889999999988877654 4
Q ss_pred CeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCE
Q 003840 659 NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPS 737 (792)
Q Consensus 659 g~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~ 737 (792)
+.+.|-.+.....+..++.|.+-|.++.|++..++|++|++| ..+|||--. ..+..-..|+.+|++++|.|+ +.
T Consensus 166 ~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G----~~Lf~S~~~ey~ITSva~npd-~~ 240 (737)
T KOG1524|consen 166 GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQG----ANLFTSAAEEYAITSVAFNPE-KD 240 (737)
T ss_pred CeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccC----cccccCChhccceeeeeeccc-cc
Confidence 667777777777778889999999999999999999999999 999999642 566667778999999999999 44
Q ss_pred EEEEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEeCCCcEEE
Q 003840 738 LLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKL 790 (792)
Q Consensus 738 L~sgs~dg~I~IwDl~~~~~~~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~I 790 (792)
+++++ .+++++ .....+.|..++|++||..+++|+..|.|.+
T Consensus 241 ~~v~S-~nt~R~----------~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 241 YLLWS-YNTARF----------SSPRVGSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred eeeee-eeeeee----------cCCCccceEEEEEcCCCceeeccccCceEEE
Confidence 44444 344442 2234577999999999999999998887753
No 185
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.72 E-value=5.5e-16 Score=155.38 Aligned_cols=214 Identities=21% Similarity=0.340 Sum_probs=166.2
Q ss_pred ceeeeeeee-cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCce-eEEec-----cCCCCEEEEEECC--CCCeEEE
Q 003840 501 SFKEANSVR-ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKS-KTNLE-----EHSSLITDVRFSP--SMPRLAT 571 (792)
Q Consensus 501 ~~~~~~~l~-~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~-~~~l~-----~h~~~V~~i~fsp--dg~~Las 571 (792)
+++.+..+. .+-+.|.|+.|.|++..||+-. |..|.+|+++.... +..+. ++....++-+|+| +++.+++
T Consensus 111 tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~t 189 (370)
T KOG1007|consen 111 TLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVAT 189 (370)
T ss_pred hhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEE
Confidence 356666666 6778999999999999998876 88999999987665 33332 3567788899999 6666666
Q ss_pred EeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCCeeEEEEecCCCE
Q 003840 572 SSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGR 651 (792)
Q Consensus 572 gs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~ 651 (792)
. .|+++..||+++..+....-..|...|..+.|+|+..++|++|+.||.|+|||++.-
T Consensus 190 t-~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~t--------------------- 247 (370)
T KOG1007|consen 190 T-SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKT--------------------- 247 (370)
T ss_pred e-CCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCC---------------------
Confidence 5 578899999998666666666899999999999999999999999999999998753
Q ss_pred EEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCC-CEEEEEeCC-eEEEEECCCCC------------------
Q 003840 652 YLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSG-ELLASVSED-SVRVWTVGSGS------------------ 711 (792)
Q Consensus 652 lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg-~~Las~s~d-~I~IwDl~s~~------------------ 711 (792)
..++..+.+|..+|++|.|+|.. .+|++++.| .|.+|...+-.
T Consensus 248 -----------------k~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~d 310 (370)
T KOG1007|consen 248 -----------------KFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDED 310 (370)
T ss_pred -----------------CccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchh
Confidence 34566777899999999999854 477778888 88888653221
Q ss_pred ---C-----cceEEEeecCCCceEEEEEeCCCCEE-EEEEcCCeEEEEECCC
Q 003840 712 ---E-----GECVHELSCNGNKFHSCVFHPTYPSL-LVIGCYQSLELWNMSE 754 (792)
Q Consensus 712 ---~-----~~~i~~~~~~~~~i~si~fspdg~~L-~sgs~dg~I~IwDl~~ 754 (792)
. ...+.++..|...|++++|+.-.+++ ++.+.||.+.|=.+..
T Consensus 311 seer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 311 SEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVPR 362 (370)
T ss_pred hHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCCh
Confidence 0 12234677789999999999877765 5568899988876653
No 186
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=1.7e-15 Score=171.82 Aligned_cols=279 Identities=17% Similarity=0.280 Sum_probs=208.3
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC----CceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCC
Q 003840 510 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT----LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN 585 (792)
Q Consensus 510 ~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t----~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s 585 (792)
.|...++|.++||+++++|+|..||.|.||.--. ......+.-|...|++++|+++|.+|++|+..|.+.+|.+++
T Consensus 203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T 282 (792)
T KOG1963|consen 203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLET 282 (792)
T ss_pred hhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecC
Confidence 5777799999999999999999999999996422 233456778999999999999999999999999999999998
Q ss_pred CCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee--------------CCeeEEEEecCCCE
Q 003840 586 PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK--------------GGTAQMRFQPHLGR 651 (792)
Q Consensus 586 ~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~--------------~~~~~v~~sp~~~~ 651 (792)
++ ...+..-.+.|..+.++||++.+. .+..|..|.+....+......+. +-...++++|..+.
T Consensus 283 ~~--kqfLPRLgs~I~~i~vS~ds~~~s-l~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~ 359 (792)
T KOG1963|consen 283 GK--KQFLPRLGSPILHIVVSPDSDLYS-LVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNS 359 (792)
T ss_pred CC--cccccccCCeeEEEEEcCCCCeEE-EEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCc
Confidence 54 455566788999999999987554 56669999998876544333221 22345788998888
Q ss_pred EEEEEcCCeEEEEECCCCeEEEEecC-----C------CCCeEEEEEcCCCCEEEEEe---------CC--eEEEEECCC
Q 003840 652 YLAAAAENVVSILDAETQACRLSLQG-----H------TKPIDSVCWDPSGELLASVS---------ED--SVRVWTVGS 709 (792)
Q Consensus 652 lla~s~dg~I~i~D~~t~~~~~~l~~-----h------~~~V~sv~~spdg~~Las~s---------~d--~I~IwDl~s 709 (792)
++..+..+.|.+||+.+.+.++.+.. + ...++.++.+..|.++++.- ++ .+++|-...
T Consensus 360 ~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~ 439 (792)
T KOG1963|consen 360 LVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNP 439 (792)
T ss_pred eeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcC
Confidence 99999999999999988766655431 2 22477788888899998863 11 688998765
Q ss_pred CCCcceE--EEeecCCCceEEEEEeC-CCC-EEEEEEcCCeEEEEECCCCc----------EE-EEcccCCCeEEEEEeC
Q 003840 710 GSEGECV--HELSCNGNKFHSCVFHP-TYP-SLLVIGCYQSLELWNMSENK----------TM-TLTAHEGLIAALAVST 774 (792)
Q Consensus 710 ~~~~~~i--~~~~~~~~~i~si~fsp-dg~-~L~sgs~dg~I~IwDl~~~~----------~~-~~~~h~~~V~sl~fsp 774 (792)
....-.+ .....|+..+...++.+ ... .+++++.||.++||-+...+ +. .-..|..++++++|+.
T Consensus 440 ~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~ 519 (792)
T KOG1963|consen 440 NSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQ 519 (792)
T ss_pred CcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcC
Confidence 4332222 22335666555555543 333 78999999999999883321 11 1124788999999999
Q ss_pred CCCEEEEEeCCCcEEEeC
Q 003840 775 ETGYVASASHDKFVKLWK 792 (792)
Q Consensus 775 dg~~LaSgs~DG~I~IWd 792 (792)
||..|+ ++.|++|.|||
T Consensus 520 dGslla-~s~~~~Itiwd 536 (792)
T KOG1963|consen 520 DGSLLA-VSFDDTITIWD 536 (792)
T ss_pred CCcEEE-EecCCEEEEec
Confidence 996655 66899999997
No 187
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=1.2e-15 Score=149.57 Aligned_cols=227 Identities=19% Similarity=0.261 Sum_probs=170.9
Q ss_pred CEEEEEECCCCCeEEEEeCCCcEEEEeCCC---------CCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEE
Q 003840 556 LITDVRFSPSMPRLATSSFDKTVRVWDADN---------PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWS 626 (792)
Q Consensus 556 ~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s---------~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwd 626 (792)
.|..-+|+|.+++|++|+.+|.|.|+.+.+ +...+..+.+|.++|+.++|+. .++++|+ ||.|+-|.
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d---~~Lls~g-dG~V~gw~ 87 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD---DFLLSGG-DGLVYGWE 87 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh---hheeecc-CceEEEee
Confidence 455668999999999999999999998863 2345666789999999999993 3454665 69999998
Q ss_pred cCCCee----EEEe------------eCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCC
Q 003840 627 INNGSC----TRVF------------KGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPS 690 (792)
Q Consensus 627 l~~~~~----~~~~------------~~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spd 690 (792)
.+.... .+.+ -..++.+.+.|..+.++.++.|+.++.||+++++...++++|++.|.++.--..
T Consensus 88 W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~ 167 (325)
T KOG0649|consen 88 WNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNA 167 (325)
T ss_pred ehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeeccc
Confidence 765432 1100 124677888999999999999999999999999999999999999999988555
Q ss_pred CCEEEEEeCC-eEEEEECCCCCCcceEEEeec-------CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEcc
Q 003840 691 GELLASVSED-SVRVWTVGSGSEGECVHELSC-------NGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTA 762 (792)
Q Consensus 691 g~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~-------~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~~~~~ 762 (792)
..-+++|++| +++|||.++.+....+..++. .+..|-+++. +..++++|+ ...+.+|.++..++.....
T Consensus 168 ~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGg-Gp~lslwhLrsse~t~vfp 244 (325)
T KOG0649|consen 168 NGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGG-GPKLSLWHLRSSESTCVFP 244 (325)
T ss_pred CcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecC-CCceeEEeccCCCceEEEe
Confidence 5567789988 999999998854444433221 1223444444 445666554 4589999999999988888
Q ss_pred cCCCeEEEEEeCCCCEEEEEeCCCcEEEe
Q 003840 763 HEGLIAALAVSTETGYVASASHDKFVKLW 791 (792)
Q Consensus 763 h~~~V~sl~fspdg~~LaSgs~DG~I~IW 791 (792)
....|..+.|..| .+++++..+.|.-|
T Consensus 245 ipa~v~~v~F~~d--~vl~~G~g~~v~~~ 271 (325)
T KOG0649|consen 245 IPARVHLVDFVDD--CVLIGGEGNHVQSY 271 (325)
T ss_pred cccceeEeeeecc--eEEEeccccceeee
Confidence 8888999999654 56677766555544
No 188
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=4.5e-16 Score=159.52 Aligned_cols=247 Identities=16% Similarity=0.220 Sum_probs=176.9
Q ss_pred eeeecCCCCeEEEEEcC--CCCEEEEEeCCCeEEEEECCCCceeEEe--ccCC-CCEEEEEECCCCCeEEEEe----CCC
Q 003840 506 NSVRASTSKVICCHFSS--DGKLLATGGHDKKAVLWHTDTLKSKTNL--EEHS-SLITDVRFSPSMPRLATSS----FDK 576 (792)
Q Consensus 506 ~~l~~H~~~V~~lafsp--dg~~Lasgs~Dg~I~vWdl~t~~~~~~l--~~h~-~~V~~i~fspdg~~Lasgs----~Dg 576 (792)
..+++|...+..+.|.. ....+.+|+.||+|++||+........+ ..+. .+..|++...++..+++|. .|-
T Consensus 64 ~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A 143 (376)
T KOG1188|consen 64 EEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDA 143 (376)
T ss_pred heecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCce
Confidence 44667777777888876 4568999999999999999876655444 3454 5677777777787888885 367
Q ss_pred cEEEEeCCCCCceeEE-ecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCee----EEEee--CCeeEEEEecCC
Q 003840 577 TVRVWDADNPGYSLRT-FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC----TRVFK--GGTAQMRFQPHL 649 (792)
Q Consensus 577 ~V~IWdl~s~~~~i~~-~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~----~~~~~--~~~~~v~~sp~~ 649 (792)
.|.+||++.....++. +..|...|++|+|+|.+.++|++|+.||.|.+||++.... +.++. ..+..+.|..++
T Consensus 144 ~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ 223 (376)
T KOG1188|consen 144 SVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKK 223 (376)
T ss_pred EEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCC
Confidence 8999999986664544 4579999999999999999999999999999999986532 22222 346677887665
Q ss_pred -CEEEEEEcCCeEEEEECCCCeEEEEecCCC------------CCeEEEEEcC-CCCEEEEEeCC--eEEEEEC---CCC
Q 003840 650 -GRYLAAAAENVVSILDAETQACRLSLQGHT------------KPIDSVCWDP-SGELLASVSED--SVRVWTV---GSG 710 (792)
Q Consensus 650 -~~lla~s~dg~I~i~D~~t~~~~~~l~~h~------------~~V~sv~~sp-dg~~Las~s~d--~I~IwDl---~s~ 710 (792)
+++.+.+..+...+|+++.+.+...+.... ..+... .+| ++..++.++.+ ...++-+ .++
T Consensus 224 ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~-~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~ 302 (376)
T KOG1188|consen 224 YKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINE-HSPGDKDTCALAGTDSNKGTIFPLVDTSSG 302 (376)
T ss_pred cceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeec-ccCCCcceEEEeccccCceeEEEeeecccc
Confidence 578889999999999999887555443210 111111 223 34455554443 4444433 344
Q ss_pred CCcceEEEeec-CCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 003840 711 SEGECVHELSC-NGNKFHSCVFHPTYPSLLVIGCYQSLELWNMS 753 (792)
Q Consensus 711 ~~~~~i~~~~~-~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~ 753 (792)
.....+..+.+ |...|+++.|.-.+..+++|+.||.+.+|...
T Consensus 303 ~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 303 SLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKVE 346 (376)
T ss_pred cccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEecC
Confidence 44445555555 55668889999999999999999999999863
No 189
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.71 E-value=8.3e-16 Score=174.41 Aligned_cols=261 Identities=19% Similarity=0.260 Sum_probs=195.1
Q ss_pred CcceeccCCcceeeeeeeecCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCce--eEE----eccCCCCEEEEEEC
Q 003840 491 GRGMDVSQGFSFKEANSVRASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTDTLKS--KTN----LEEHSSLITDVRFS 563 (792)
Q Consensus 491 ~~~~d~~~~~~~~~~~~l~~H~~~V~~lafsp-dg~~Lasgs~Dg~I~vWdl~t~~~--~~~----l~~h~~~V~~i~fs 563 (792)
.-+|++......+ ..-.....|+|++|+| +..+||.|+.+|.|.+||+..+.. ... ...|...|+.+.|.
T Consensus 224 ~~vW~~~~p~~Pe---~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~ 300 (555)
T KOG1587|consen 224 LLVWSLKNPNTPE---LVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWL 300 (555)
T ss_pred EEEEecCCCCCce---EEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEe
Confidence 4456665552222 2223467899999999 667889999999999999987655 222 23689999999998
Q ss_pred CCCC--eEEEEeCCCcEEEEeCCCCCceeEE-----ec------ccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcC--
Q 003840 564 PSMP--RLATSSFDKTVRVWDADNPGYSLRT-----FM------GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN-- 628 (792)
Q Consensus 564 pdg~--~Lasgs~Dg~V~IWdl~s~~~~i~~-----~~------~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~-- 628 (792)
.+.. -|++++.||.|..|+++.-..+... .. .....+++++|.+...+.|+.|+++|.|..-+-.
T Consensus 301 ~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~ 380 (555)
T KOG1587|consen 301 QNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGY 380 (555)
T ss_pred ccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCC
Confidence 7544 4999999999999998753221111 11 2234689999999988999999999999873332
Q ss_pred -CCe-e----E---EEeeCCeeEEEEecCCCEEEEEEcCCeEEEEECC-CCeEEEEecCCCCCeEEEEEcCCCC-EEEEE
Q 003840 629 -NGS-C----T---RVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAE-TQACRLSLQGHTKPIDSVCWDPSGE-LLASV 697 (792)
Q Consensus 629 -~~~-~----~---~~~~~~~~~v~~sp~~~~lla~s~dg~I~i~D~~-t~~~~~~l~~h~~~V~sv~~spdg~-~Las~ 697 (792)
... . . ..+.+.+..+.++|-+..++..+.|.+|+||... ...++..+..+...|++++|+|..- .|+++
T Consensus 381 ~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~ 460 (555)
T KOG1587|consen 381 TPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATV 460 (555)
T ss_pred cccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEE
Confidence 222 0 1 1123567788999999888888889999999998 7788888888888899999999765 55556
Q ss_pred eCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCC
Q 003840 698 SED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSEN 755 (792)
Q Consensus 698 s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~ 755 (792)
..+ .|.|||+..... .++.....+......+.|++.|+.|++|...|.+++|++...
T Consensus 461 d~~G~l~iWDLl~~~~-~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 461 DGDGNLDIWDLLQDDE-EPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred cCCCceehhhhhcccc-CCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence 656 999999976433 444444444666778888999999999999999999999653
No 190
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=5e-15 Score=145.31 Aligned_cols=266 Identities=16% Similarity=0.222 Sum_probs=189.5
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEECCC---------C-ceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeC
Q 003840 514 KVICCHFSSDGKLLATGGHDKKAVLWHTDT---------L-KSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDA 583 (792)
Q Consensus 514 ~V~~lafspdg~~Lasgs~Dg~I~vWdl~t---------~-~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl 583 (792)
.|.+-+|+|.+++|++|..+|.|.++.+++ + ..+....+|.++|+.++|.. .+|++|+ ||.|+-|..
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d--~~Lls~g-dG~V~gw~W 88 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD--DFLLSGG-DGLVYGWEW 88 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh--hheeecc-CceEEEeee
Confidence 477788999999999999999999998753 2 23445578999999999983 3566665 599999988
Q ss_pred CCCCce-----eEEe-------cccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCCee---EEEEecC
Q 003840 584 DNPGYS-----LRTF-------MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTA---QMRFQPH 648 (792)
Q Consensus 584 ~s~~~~-----i~~~-------~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~---~v~~sp~ 648 (792)
+...+. +... ...-..|+++.+.|..+.+|.+| .|+.++.||+++|+..+.++++.. ++.....
T Consensus 89 ~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~Ag-GD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~ 167 (325)
T KOG0649|consen 89 NEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAG-GDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNA 167 (325)
T ss_pred hhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEec-CCeEEEEEEecCCEEEEEEcCCcceeeeeeeccc
Confidence 652221 0000 11224688999999887777555 799999999999999999988754 4555566
Q ss_pred CCEEEEEEcCCeEEEEECCCCeEEEEecCC----------CCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEE
Q 003840 649 LGRYLAAAAENVVSILDAETQACRLSLQGH----------TKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHE 718 (792)
Q Consensus 649 ~~~lla~s~dg~I~i~D~~t~~~~~~l~~h----------~~~V~sv~~spdg~~Las~s~d~I~IwDl~s~~~~~~i~~ 718 (792)
.+.+++|+.||++++||.++.+++..+..- ..+|.+++ -+..+|++|+.-.+.+|.+++.+. .++..
T Consensus 168 ~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala--~~edWlvCGgGp~lslwhLrsse~-t~vfp 244 (325)
T KOG0649|consen 168 NGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALA--VNEDWLVCGGGPKLSLWHLRSSES-TCVFP 244 (325)
T ss_pred CcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEe--ccCceEEecCCCceeEEeccCCCc-eEEEe
Confidence 788999999999999999999988877532 23455555 456788877766999999988632 33333
Q ss_pred eecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEeCC-CCEEEEEeCCCcEEEe
Q 003840 719 LSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTE-TGYVASASHDKFVKLW 791 (792)
Q Consensus 719 ~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~~~~~h~~~V~sl~fspd-g~~LaSgs~DG~I~IW 791 (792)
+ ...+..+.|..| .+++++..+.|.-|.+..--..........+++..|+.. -++|-.++..+.+.|+
T Consensus 245 i---pa~v~~v~F~~d--~vl~~G~g~~v~~~~l~Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 245 I---PARVHLVDFVDD--CVLIGGEGNHVQSYTLNGVLQANIPVESTACYSASWQTSPIKFISIAGFSNKLHIL 313 (325)
T ss_pred c---ccceeEeeeecc--eEEEeccccceeeeeeccEEEEeccCCccceeeecccCCceEEEEecccceeeeee
Confidence 3 346677777554 577788778899998865444444444444555555432 3455566677777765
No 191
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=3.8e-15 Score=153.52 Aligned_cols=276 Identities=15% Similarity=0.248 Sum_probs=192.8
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEec-cCCCCEEEEEECCC-CCeEEEEeCCCcEEEEeCCCCCce
Q 003840 512 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE-EHSSLITDVRFSPS-MPRLATSSFDKTVRVWDADNPGYS 589 (792)
Q Consensus 512 ~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~-~h~~~V~~i~fspd-g~~Lasgs~Dg~V~IWdl~s~~~~ 589 (792)
+-.+..++|++.-..+|++..|-.|++||-.. ++...++ .....|+|++|-|. ++.|++|+..| |.||..+.....
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~ 175 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNA 175 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCccccc
Confidence 34578899999877889999999999999776 5555554 34567999999995 45788888777 999988753221
Q ss_pred -------------eEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEe---eCCeeEEEEecCCCEEE
Q 003840 590 -------------LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF---KGGTAQMRFQPHLGRYL 653 (792)
Q Consensus 590 -------------i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~---~~~~~~v~~sp~~~~ll 653 (792)
+....+| ..|+++.|.+||..++-+.-.|..|+|||..++.++... -+++.-+.|+|++.+++
T Consensus 176 ~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lf 254 (445)
T KOG2139|consen 176 NRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLF 254 (445)
T ss_pred ccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEE
Confidence 1222344 689999999999877766667899999999999877654 24567799999999999
Q ss_pred EEEcCCeEEEEECCC-CeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCc------------ceEEEee
Q 003840 654 AAAAENVVSILDAET-QACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEG------------ECVHELS 720 (792)
Q Consensus 654 a~s~dg~I~i~D~~t-~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d~I~IwDl~s~~~~------------~~i~~~~ 720 (792)
++..|+..++|.... ........ ..+.|...+|+|+|++|+....+.-++|.+....+. ..+..+.
T Consensus 255 aAt~davfrlw~e~q~wt~erw~l-gsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~ 333 (445)
T KOG2139|consen 255 AATCDAVFRLWQENQSWTKERWIL-GSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQ 333 (445)
T ss_pred Eecccceeeeehhcccceecceec-cCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccch
Confidence 999999999995544 33333333 345899999999999887776664445554322110 0111111
Q ss_pred -----c----CCCceEEEEEeCCCCEEEEEEcCC--------eEEEEECCCCcEEEEc--c--cCCCeEEEEEeC---CC
Q 003840 721 -----C----NGNKFHSCVFHPTYPSLLVIGCYQ--------SLELWNMSENKTMTLT--A--HEGLIAALAVST---ET 776 (792)
Q Consensus 721 -----~----~~~~i~si~fspdg~~L~sgs~dg--------~I~IwDl~~~~~~~~~--~--h~~~V~sl~fsp---dg 776 (792)
. ..+.+.+++|.|.|.++++.-..+ .|.+||....-.+.+. + .......++|+| ++
T Consensus 334 e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g 413 (445)
T KOG2139|consen 334 EVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEG 413 (445)
T ss_pred hhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCC
Confidence 1 146788999999999999986654 4677887766555332 1 111244556654 56
Q ss_pred CEEEEEeCCCcEEEe
Q 003840 777 GYVASASHDKFVKLW 791 (792)
Q Consensus 777 ~~LaSgs~DG~I~IW 791 (792)
.+|..|=..|.|.-|
T Consensus 414 ~lLsiaWsTGriq~y 428 (445)
T KOG2139|consen 414 RLLSIAWSTGRIQRY 428 (445)
T ss_pred cEEEEEeccCceEee
Confidence 666666667777654
No 192
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.70 E-value=2.2e-15 Score=170.88 Aligned_cols=230 Identities=17% Similarity=0.180 Sum_probs=163.2
Q ss_pred CCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCC---CcEEEEeCCCCCc-eeEEecccCCCeEEEEEcCC
Q 003840 533 DKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD---KTVRVWDADNPGY-SLRTFMGHSASVMSLDFHPN 608 (792)
Q Consensus 533 Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~D---g~V~IWdl~s~~~-~i~~~~~h~~~V~sl~fspd 608 (792)
+..|+|||.+... ...+..|...|.+++|+|||+.|++++.+ ..|++||+.++.. .+..+.+ ...+++|+||
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g---~~~~~~wSPD 258 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRG---HNGAPAFSPD 258 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCC---ccCceeECCC
Confidence 4689999987554 56677788899999999999999888754 3699999986332 2333333 3447899999
Q ss_pred CCeEEEEEeCCCcEEEE--EcCCCeeEEEee--CCeeEEEEecCCCEEEEEEc-CCeEEEEECCC--CeEEEEecCCCCC
Q 003840 609 KDDLICSCDGDGEIRYW--SINNGSCTRVFK--GGTAQMRFQPHLGRYLAAAA-ENVVSILDAET--QACRLSLQGHTKP 681 (792)
Q Consensus 609 ~~~ll~sgs~Dg~I~iw--dl~~~~~~~~~~--~~~~~v~~sp~~~~lla~s~-dg~I~i~D~~t--~~~~~~l~~h~~~ 681 (792)
++.++++.+.+|.+.|| |+.++....... .......|+|++..+++++. ++...||+++. +.. ..+ .+..
T Consensus 259 G~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~-~~l-~~~~- 335 (429)
T PRK01742 259 GSRLAFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGA-SLV-GGRG- 335 (429)
T ss_pred CCEEEEEEecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCe-EEe-cCCC-
Confidence 99888777778875555 666665444322 23567899999998877664 67777776543 322 222 3333
Q ss_pred eEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC---CCCcEE
Q 003840 682 IDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNM---SENKTM 758 (792)
Q Consensus 682 V~sv~~spdg~~Las~s~d~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl---~~~~~~ 758 (792)
.++.|+|||++|++.+.+.+.+||+.++.. .. +... .....+.|+|+|++|++++.++.+.+|++ ......
T Consensus 336 -~~~~~SpDG~~ia~~~~~~i~~~Dl~~g~~---~~-lt~~-~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~ 409 (429)
T PRK01742 336 -YSAQISADGKTLVMINGDNVVKQDLTSGST---EV-LSST-FLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKA 409 (429)
T ss_pred -CCccCCCCCCEEEEEcCCCEEEEECCCCCe---EE-ecCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceE
Confidence 467899999999988878777899987632 11 1111 12356789999999999999987776654 344445
Q ss_pred EEcccCCCeEEEEEeCC
Q 003840 759 TLTAHEGLIAALAVSTE 775 (792)
Q Consensus 759 ~~~~h~~~V~sl~fspd 775 (792)
.+..|.+.+..++|+|-
T Consensus 410 ~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 410 RLPGSDGQVKFPAWSPY 426 (429)
T ss_pred EccCCCCCCCCcccCCC
Confidence 67788888999999984
No 193
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=3.7e-15 Score=154.24 Aligned_cols=282 Identities=15% Similarity=0.216 Sum_probs=213.6
Q ss_pred CcceEEEEeCCCeeeecCCC---eeEeCCCcchhhcccccccCCCCCCceeeeccCCCCCCCCCCCcceeccCCcceeee
Q 003840 429 SKPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEA 505 (792)
Q Consensus 429 ~k~~l~~s~Dg~~~~ss~s~---~lWD~~tg~~~~~~~~~~~~g~~d~~v~~~l~~d~~~~~d~~~~~~d~~~~~~~~~~ 505 (792)
....+-||.+|.++++++.+ ++|++......+. .+++
T Consensus 58 CiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~----------------------------------------~KPI 97 (609)
T KOG4227|consen 58 CINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKT----------------------------------------PKPI 97 (609)
T ss_pred ccceeeeccCCeEEeecCCcceeeeechHHHHhhcC----------------------------------------CCCc
Confidence 35578999999999998888 7898764322110 0122
Q ss_pred eee-ecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEecc--CCCCEEEEEECCCCCeEEEEeCCCcEEEEe
Q 003840 506 NSV-RASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE--HSSLITDVRFSPSMPRLATSSFDKTVRVWD 582 (792)
Q Consensus 506 ~~l-~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~--h~~~V~~i~fspdg~~Lasgs~Dg~V~IWd 582 (792)
... ..|...|.|++|....++|++|+.+++|.+.|+++...+..+.. ..+.|+.+..+|..+.|++.+.+|.|.+||
T Consensus 98 ~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D 177 (609)
T KOG4227|consen 98 GVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFID 177 (609)
T ss_pred eeccCccccceEEEEEccCCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEe
Confidence 222 35668999999999999999999999999999999887777653 346899999999999999999999999999
Q ss_pred CCCCCceeE--EecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeE-------EEeeCC---eeEEEEecCCC
Q 003840 583 ADNPGYSLR--TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT-------RVFKGG---TAQMRFQPHLG 650 (792)
Q Consensus 583 l~s~~~~i~--~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~-------~~~~~~---~~~v~~sp~~~ 650 (792)
++.....+. ...........+.|+|....||++.+..+-+-+||++..... +.+... -..+.|++.+.
T Consensus 178 ~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~ 257 (609)
T KOG4227|consen 178 NRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGN 257 (609)
T ss_pred ccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCC
Confidence 986442322 233345667889999999999999999999999999864321 111111 24578999999
Q ss_pred EEEEEEcCCeEEEEECCCCeE-EEEecCCC-------CCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCC---------
Q 003840 651 RYLAAAAENVVSILDAETQAC-RLSLQGHT-------KPIDSVCWDPSGELLASVSED-SVRVWTVGSGSE--------- 712 (792)
Q Consensus 651 ~lla~s~dg~I~i~D~~t~~~-~~~l~~h~-------~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~--------- 712 (792)
.+++.-....-.+||+-+.++ ++.+. |. ..+.+++|..|-. +++|+++ .|++|.+.....
T Consensus 258 Q~msiRR~~~P~~~D~~S~R~~V~k~D-~N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~WklP~~~ds~G~~~IG~ 335 (609)
T KOG4227|consen 258 QFMSIRRGKCPLYFDFISQRCFVLKSD-HNPNGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWKLPRANDSYGFTQIGH 335 (609)
T ss_pred eehhhhccCCCEEeeeecccceeEecc-CCCCcceeeeeeeeeeeeccee-eeccCcccceEEEecCCCccccCccccCc
Confidence 999888777778888877543 44443 32 2466788865544 8899999 999999853211
Q ss_pred -----------cceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 003840 713 -----------GECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNM 752 (792)
Q Consensus 713 -----------~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl 752 (792)
.+.+..+.+|...+..+.|++...+|++.+-.+.++||.-
T Consensus 336 ~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~ 386 (609)
T KOG4227|consen 336 DEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSD 386 (609)
T ss_pred chhhCchhheecceeEEEecccccccceeecCCcceEeccchhhheecccc
Confidence 1234567889999999999999999999999999999964
No 194
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.69 E-value=4.2e-15 Score=151.31 Aligned_cols=225 Identities=16% Similarity=0.256 Sum_probs=173.9
Q ss_pred eeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC---CceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeC
Q 003840 507 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT---LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDA 583 (792)
Q Consensus 507 ~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t---~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl 583 (792)
.++.-..+|+|.+|++|+..+|++.....|.||.... .+...++..|...|++|+|+|..+.|++|+.|..-+||..
T Consensus 5 ~~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~ 84 (361)
T KOG1523|consen 5 VFHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQ 84 (361)
T ss_pred EeeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCcccccc
Confidence 3444567899999999999999999999999998764 4577889999999999999999999999999999999999
Q ss_pred CCCC--ceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCe-------eEEEeeCCeeEEEEecCCCEEEE
Q 003840 584 DNPG--YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS-------CTRVFKGGTAQMRFQPHLGRYLA 654 (792)
Q Consensus 584 ~s~~--~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~-------~~~~~~~~~~~v~~sp~~~~lla 654 (792)
.+++ ++...+..+...+++|.|+|.++ .|++|+....|.||-++... ..+.++..+.++.|+|++-.+++
T Consensus 85 ~~~~~WkptlvLlRiNrAAt~V~WsP~en-kFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaa 163 (361)
T KOG1523|consen 85 PSGGTWKPTLVLLRINRAATCVKWSPKEN-KFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAA 163 (361)
T ss_pred CCCCeeccceeEEEeccceeeEeecCcCc-eEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecc
Confidence 5433 34455667889999999999965 67799989999888776543 22334567889999999999999
Q ss_pred EEcCCeEEEEECC-----C-------------CeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcce
Q 003840 655 AAAENVVSILDAE-----T-------------QACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGEC 715 (792)
Q Consensus 655 ~s~dg~I~i~D~~-----t-------------~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~ 715 (792)
|+.|+..+||..- . +..+.++....+.|..+.|+|+|..|+-.+.| .+.+-|.....+ .
T Consensus 164 Gs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~--~ 241 (361)
T KOG1523|consen 164 GSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSE--R 241 (361)
T ss_pred cccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCch--h
Confidence 9999999888542 1 12223333456789999999999999999999 899888765432 2
Q ss_pred EEEeecCCCceEEEEEeCC
Q 003840 716 VHELSCNGNKFHSCVFHPT 734 (792)
Q Consensus 716 i~~~~~~~~~i~si~fspd 734 (792)
+.......-+..++.|-.+
T Consensus 242 v~~~~~~~lP~ls~~~ise 260 (361)
T KOG1523|consen 242 VQSVATAQLPLLSVSWISE 260 (361)
T ss_pred ccchhhccCCceeeEeecC
Confidence 2222223345556655443
No 195
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.69 E-value=5.7e-15 Score=148.33 Aligned_cols=273 Identities=16% Similarity=0.256 Sum_probs=198.8
Q ss_pred CCeEEEEEcC---CCCEEEEEeC----CCeEEEEECC--CCceeEEe-ccCCCCEEEEEECCCCC-----eEEEEeCCCc
Q 003840 513 SKVICCHFSS---DGKLLATGGH----DKKAVLWHTD--TLKSKTNL-EEHSSLITDVRFSPSMP-----RLATSSFDKT 577 (792)
Q Consensus 513 ~~V~~lafsp---dg~~Lasgs~----Dg~I~vWdl~--t~~~~~~l-~~h~~~V~~i~fspdg~-----~Lasgs~Dg~ 577 (792)
-.++++.|+. ...+||.|+. .++|.|..++ +++.+..- -.|..+++.+.|.|+.. +||+++ ..
T Consensus 45 ~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~ 122 (364)
T KOG0290|consen 45 WPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSS--DF 122 (364)
T ss_pred CceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhccc--Ce
Confidence 3578888884 2347888873 4566666543 44444332 26889999999999763 445443 35
Q ss_pred EEEEeCCCCCceeE--------EecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCee--EE----EeeCCeeEE
Q 003840 578 VRVWDADNPGYSLR--------TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC--TR----VFKGGTAQM 643 (792)
Q Consensus 578 V~IWdl~s~~~~i~--------~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~--~~----~~~~~~~~v 643 (792)
+|+|.+..+...+. +-..+..+++++.|+.-..++|.+++-|-++.|||++++.. ++ .+...+..+
T Consensus 123 LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DI 202 (364)
T KOG0290|consen 123 LRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDI 202 (364)
T ss_pred EEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEE
Confidence 99999984222111 12246688999999998899999999999999999998732 22 235678889
Q ss_pred EEecCCC-EEEEEEcCCeEEEEECCCCeEEEEe---cCCCCCeEEEEEcC-CCCEEEEEeCC--eEEEEECCCCCCcceE
Q 003840 644 RFQPHLG-RYLAAAAENVVSILDAETQACRLSL---QGHTKPIDSVCWDP-SGELLASVSED--SVRVWTVGSGSEGECV 716 (792)
Q Consensus 644 ~~sp~~~-~lla~s~dg~I~i~D~~t~~~~~~l---~~h~~~V~sv~~sp-dg~~Las~s~d--~I~IwDl~s~~~~~~i 716 (792)
+|...+. .+++++.||.|++||++..+.-..+ .....+...++|++ |-+|+|+-..| .|.|.|++.. ...+
T Consensus 203 af~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P--~tpv 280 (364)
T KOG0290|consen 203 AFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVP--CTPV 280 (364)
T ss_pred EeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCC--Ccce
Confidence 9998664 4666788999999999987543332 22245788899988 55788888877 8999999864 3678
Q ss_pred EEeecCCCceEEEEEeCCC-CEEEEEEcCCeEEEEECCCCcE------EEEcccCCCeEEEEEeC-CCCEEEEEeCCCcE
Q 003840 717 HELSCNGNKFHSCVFHPTY-PSLLVIGCYQSLELWNMSENKT------MTLTAHEGLIAALAVST-ETGYVASASHDKFV 788 (792)
Q Consensus 717 ~~~~~~~~~i~si~fspdg-~~L~sgs~dg~I~IwDl~~~~~------~~~~~h~~~V~sl~fsp-dg~~LaSgs~DG~I 788 (792)
.++..|...|..++|.|.. .+|++++.|..+.|||+..--. +....-.+.|+.+.|++ ...+|+.|. ++++
T Consensus 281 a~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~~-~kkl 359 (364)
T KOG0290|consen 281 ARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPDWIAICF-GKKL 359 (364)
T ss_pred ehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhccceeeeeeecccCCCEEEEEe-cCee
Confidence 8999999999999999965 6788999999999999965322 22334677899999995 556787765 4444
Q ss_pred EE
Q 003840 789 KL 790 (792)
Q Consensus 789 ~I 790 (792)
.|
T Consensus 360 ei 361 (364)
T KOG0290|consen 360 EI 361 (364)
T ss_pred eE
Confidence 43
No 196
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.67 E-value=2e-14 Score=149.04 Aligned_cols=230 Identities=13% Similarity=0.152 Sum_probs=172.7
Q ss_pred CCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCC--CcEEEEEcCCCe
Q 003840 554 SSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD--GEIRYWSINNGS 631 (792)
Q Consensus 554 ~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~D--g~I~iwdl~~~~ 631 (792)
...+..+.|+.+...|..|+.|| .++|..+.-.+. .........|..+-|+.. |++..+.+ ..+++++++.+.
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~-~~~~~~~~~IvEmLFSSS---LvaiV~~~qpr~Lkv~~~Kk~~ 79 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKC-FSKDTEGVSIVEMLFSSS---LVAIVSIKQPRKLKVVHFKKKT 79 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHh-hcccCCCeEEEEeecccc---eeEEEecCCCceEEEEEcccCc
Confidence 34577778999999999999999 788888763332 122223345666667643 55555444 348999999888
Q ss_pred eEEEeeCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecC---CCCCeEEEEEcCCCCEEEEEeC-C--eEEEE
Q 003840 632 CTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQG---HTKPIDSVCWDPSGELLASVSE-D--SVRVW 705 (792)
Q Consensus 632 ~~~~~~~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~---h~~~V~sv~~spdg~~Las~s~-d--~I~Iw 705 (792)
.+..+.-+...+++--+.++++++-.+. |+|||+++.+++.++.. +...+.++++++.+.||+.-+. + .|.||
T Consensus 80 ~ICe~~fpt~IL~VrmNr~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~ 158 (391)
T KOG2110|consen 80 TICEIFFPTSILAVRMNRKRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLF 158 (391)
T ss_pred eEEEEecCCceEEEEEccceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEE
Confidence 7766554444444444445677666655 99999999999988765 3445666666667778887543 2 89999
Q ss_pred ECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCC-eEEEEECCCCcEE-EEcc--cCCCeEEEEEeCCCCEEEE
Q 003840 706 TVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ-SLELWNMSENKTM-TLTA--HEGLIAALAVSTETGYVAS 781 (792)
Q Consensus 706 Dl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg-~I~IwDl~~~~~~-~~~~--h~~~V~sl~fspdg~~LaS 781 (792)
|+.+- ..+..+..|.+.+.+++|+++|.+||+++..| .|+||.+.++..+ .++. ....|.+++|++|+.+|++
T Consensus 159 d~~nl---~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~ 235 (391)
T KOG2110|consen 159 DTINL---QPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAA 235 (391)
T ss_pred Ecccc---eeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEE
Confidence 99765 77888889999999999999999999999999 5899999999877 3432 2456889999999999999
Q ss_pred EeCCCcEEEeC
Q 003840 782 ASHDKFVKLWK 792 (792)
Q Consensus 782 gs~DG~I~IWd 792 (792)
.|+.++|+||+
T Consensus 236 sS~TeTVHiFK 246 (391)
T KOG2110|consen 236 SSNTETVHIFK 246 (391)
T ss_pred ecCCCeEEEEE
Confidence 99999999985
No 197
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.67 E-value=1.1e-13 Score=152.75 Aligned_cols=264 Identities=12% Similarity=0.117 Sum_probs=175.7
Q ss_pred EE-EEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEE
Q 003840 526 LL-ATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLD 604 (792)
Q Consensus 526 ~L-asgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~ 604 (792)
++ ++-..++.|.|.|.++.+.+.++......-..+.|++|++++++++.||.|.+||+.+ .+.+.++.... ...+++
T Consensus 7 l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~-~~~v~~i~~G~-~~~~i~ 84 (369)
T PF02239_consen 7 LFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLAT-GKVVATIKVGG-NPRGIA 84 (369)
T ss_dssp EEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTS-SSEEEEEE-SS-EEEEEE
T ss_pred EEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCc-ccEEEEEecCC-CcceEE
Confidence 44 4555789999999999999999987655445678999999999999999999999998 56777776444 467899
Q ss_pred EcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeC----------CeeEEEEecCCCEEEEEEcC-CeEEEEECCCCeEE-
Q 003840 605 FHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG----------GTAQMRFQPHLGRYLAAAAE-NVVSILDAETQACR- 672 (792)
Q Consensus 605 fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~----------~~~~v~~sp~~~~lla~s~d-g~I~i~D~~t~~~~- 672 (792)
+++||+++++++..++.+.++|.++.+.++.+.. .+..+..++....+++.-.| +.|.+.|....+.+
T Consensus 85 ~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~ 164 (369)
T PF02239_consen 85 VSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLK 164 (369)
T ss_dssp E--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEE
T ss_pred EcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccc
Confidence 9999999998888999999999999998887643 23456667787767666664 89999998765432
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEEeCC--eEEEEECCCCCC--------------------------------------
Q 003840 673 LSLQGHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSE-------------------------------------- 712 (792)
Q Consensus 673 ~~l~~h~~~V~sv~~spdg~~Las~s~d--~I~IwDl~s~~~-------------------------------------- 712 (792)
..............|+|+++|++++... .|.++|..+++.
T Consensus 165 ~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~ 244 (369)
T PF02239_consen 165 VTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIP 244 (369)
T ss_dssp EEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEE
T ss_pred eeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecc
Confidence 2333345567789999999988776433 777777665411
Q ss_pred --------------cceEEEeecCCCceEEEEEeCCCCEEEEE---E-cCCeEEEEECCCCcEEEEcc--cCCCeEEEEE
Q 003840 713 --------------GECVHELSCNGNKFHSCVFHPTYPSLLVI---G-CYQSLELWNMSENKTMTLTA--HEGLIAALAV 772 (792)
Q Consensus 713 --------------~~~i~~~~~~~~~i~si~fspdg~~L~sg---s-~dg~I~IwDl~~~~~~~~~~--h~~~V~sl~f 772 (792)
++.+..+...+.. ..+..+|+++++++. + ..+.|.|+|..+.+.+.... -...+..+.|
T Consensus 245 ~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef 323 (369)
T PF02239_consen 245 LIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEF 323 (369)
T ss_dssp EEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE
T ss_pred cccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEE
Confidence 1111122222222 456679999999998 3 34799999999997764332 2235999999
Q ss_pred eCCCCEEEEEeCC--CcEEEeC
Q 003840 773 STETGYVASASHD--KFVKLWK 792 (792)
Q Consensus 773 spdg~~LaSgs~D--G~I~IWd 792 (792)
++||+++..+..| |.|.|||
T Consensus 324 ~~dG~~v~vS~~~~~~~i~v~D 345 (369)
T PF02239_consen 324 NPDGKEVWVSVWDGNGAIVVYD 345 (369)
T ss_dssp -TTSSEEEEEEE--TTEEEEEE
T ss_pred CCCCCEEEEEEecCCCEEEEEE
Confidence 9999977665554 3699886
No 198
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.67 E-value=3.6e-15 Score=169.17 Aligned_cols=225 Identities=15% Similarity=0.178 Sum_probs=159.3
Q ss_pred eeeeecCCCCeEEEEEcCCCCEEEEEeCC---CeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEe-CCCcEEE
Q 003840 505 ANSVRASTSKVICCHFSSDGKLLATGGHD---KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSS-FDKTVRV 580 (792)
Q Consensus 505 ~~~l~~H~~~V~~lafspdg~~Lasgs~D---g~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs-~Dg~V~I 580 (792)
...+..|...|.+.+|+|||+.||.++.+ ..|++||+.+++.... ....+...+++|+|||+.|++++ .+|.+.|
T Consensus 196 ~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l-~~~~g~~~~~~wSPDG~~La~~~~~~g~~~I 274 (429)
T PRK01742 196 QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVV-ASFRGHNGAPAFSPDGSRLAFASSKDGVLNI 274 (429)
T ss_pred ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEE-ecCCCccCceeECCCCCEEEEEEecCCcEEE
Confidence 34567788899999999999999988754 3699999988754322 22222344789999999888764 6887666
Q ss_pred EeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCC-eeEEEeeCCeeEEEEecCCCEEEEEEcCC
Q 003840 581 WDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG-SCTRVFKGGTAQMRFQPHLGRYLAAAAEN 659 (792)
Q Consensus 581 Wdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~-~~~~~~~~~~~~v~~sp~~~~lla~s~dg 659 (792)
|.++.....+..+..+...+.++.|+||+..+++++..+|.+.||++... .....+........|+|+++.+++++.++
T Consensus 275 y~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~~~~~~SpDG~~ia~~~~~~ 354 (429)
T PRK01742 275 YVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGRGYSAQISADGKTLVMINGDN 354 (429)
T ss_pred EEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCCCCCccCCCCCCEEEEEcCCC
Confidence 64432233456666777788899999999988878777888888887532 22222222224577999999998887755
Q ss_pred eEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCC
Q 003840 660 VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPT 734 (792)
Q Consensus 660 ~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspd 734 (792)
+.+||+.+++.......+ ...++.|+|||++|++++.+ .+.+|++... ....+..+..+...+..++|+|-
T Consensus 355 -i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~-~G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 355 -VVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLVSA-DGRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred -EEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEEEEC-CCCceEEccCCCCCCCCcccCCC
Confidence 556999988765433222 34568899999999998877 6777765321 12566777777777888999885
No 199
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.67 E-value=1.7e-16 Score=167.96 Aligned_cols=263 Identities=17% Similarity=0.278 Sum_probs=209.0
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeE
Q 003840 512 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLR 591 (792)
Q Consensus 512 ~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~ 591 (792)
....+.+.|+.+|++|+.|+..|.|..+|+.++.....+.. ...|.++.|..+..+||++- ...++|||-. +..+.
T Consensus 129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v-~Etv~Dv~~LHneq~~AVAQ-K~y~yvYD~~--GtElH 204 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV-METVRDVTFLHNEQFFAVAQ-KKYVYVYDNN--GTELH 204 (545)
T ss_pred ccCCeeeeecCCccEEEecCCccceeeeecccceeeeeeeh-hhhhhhhhhhcchHHHHhhh-hceEEEecCC--CcEEe
Confidence 34567899999999999999999999999999998887763 45689999998887777764 5569999876 56666
Q ss_pred EecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee---CCeeEEEEecCCCEEEEEEcCCeEEEEECCC
Q 003840 592 TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLGRYLAAAAENVVSILDAET 668 (792)
Q Consensus 592 ~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~---~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t 668 (792)
.+..| ..|..+.|.|. .+||++++..|.++.-|+.+|+.+..+. +....++-+|.+..+-+|...|+|.+|....
T Consensus 205 Clk~~-~~v~rLeFLPy-HfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~s 282 (545)
T KOG1272|consen 205 CLKRH-IRVARLEFLPY-HFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNS 282 (545)
T ss_pred ehhhc-Cchhhhcccch-hheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCC
Confidence 66654 46889999998 5788899999999999999999887664 4566688899988899999999999999999
Q ss_pred CeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeE
Q 003840 669 QACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSL 747 (792)
Q Consensus 669 ~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I 747 (792)
.+++..+..|.++|.+|+++++|.|+++.+.| .|+|||++... .+.++.. ......++||..| +++++....|
T Consensus 283 kePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~---ql~t~~t-p~~a~~ls~Sqkg--lLA~~~G~~v 356 (545)
T KOG1272|consen 283 KEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFY---QLHTYRT-PHPASNLSLSQKG--LLALSYGDHV 356 (545)
T ss_pred cchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeecccc---ccceeec-CCCcccccccccc--ceeeecCCee
Confidence 99999999999999999999999999999999 99999998764 3333333 3456677777766 5556666689
Q ss_pred EEEE-CCCCc---EEEEcc--cCCCeEEEEEeCCCCEEEEEeCCC
Q 003840 748 ELWN-MSENK---TMTLTA--HEGLIAALAVSTETGYVASASHDK 786 (792)
Q Consensus 748 ~IwD-l~~~~---~~~~~~--h~~~V~sl~fspdg~~LaSgs~DG 786 (792)
.||. .-.+. ...+.. ..+.|..+.|.|-...|..|-..|
T Consensus 357 ~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G 401 (545)
T KOG1272|consen 357 QIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGG 401 (545)
T ss_pred eeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCC
Confidence 9993 33311 112222 345899999999777776665444
No 200
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=6.5e-16 Score=165.96 Aligned_cols=207 Identities=21% Similarity=0.354 Sum_probs=160.4
Q ss_pred eeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEec-cCCCCEEEEEECC--CCCeEEEEeCCCcEEE
Q 003840 504 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE-EHSSLITDVRFSP--SMPRLATSSFDKTVRV 580 (792)
Q Consensus 504 ~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~-~h~~~V~~i~fsp--dg~~Lasgs~Dg~V~I 580 (792)
.-..|.||.+.|.|++|+.||.+|++|+.|-.|.|||.-..+.+..+. +|...|.++.|.| +.+.+++|..|..|++
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l 121 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL 121 (758)
T ss_pred hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence 445688999999999999999999999999999999998888887775 8999999999999 5668999999999999
Q ss_pred EeCCC---------CCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEE-E---------e---eC
Q 003840 581 WDADN---------PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR-V---------F---KG 638 (792)
Q Consensus 581 Wdl~s---------~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~-~---------~---~~ 638 (792)
||+.. .......+..|...|..|+..|++.+.|.++++||+|+-+|++....-. . + -.
T Consensus 122 fdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~li 201 (758)
T KOG1310|consen 122 FDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLI 201 (758)
T ss_pred EecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhh
Confidence 99985 2244566778999999999999999999999999999999998743211 1 1 12
Q ss_pred CeeEEEEecCCCE-EEEEEcCCeEEEEECCCC--------e----------EEEEec-CCC-----------CCeEEEEE
Q 003840 639 GTAQMRFQPHLGR-YLAAAAENVVSILDAETQ--------A----------CRLSLQ-GHT-----------KPIDSVCW 687 (792)
Q Consensus 639 ~~~~v~~sp~~~~-lla~s~dg~I~i~D~~t~--------~----------~~~~l~-~h~-----------~~V~sv~~ 687 (792)
...++.++|...+ |++|+.|-..++||.+.. . ++..+. +|. ..++.+.|
T Consensus 202 elk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtf 281 (758)
T KOG1310|consen 202 ELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTF 281 (758)
T ss_pred eeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEE
Confidence 3567888887765 556677889999994321 1 122221 122 11456789
Q ss_pred cCCCCEE-EEEeCCeEEEEECCCC
Q 003840 688 DPSGELL-ASVSEDSVRVWTVGSG 710 (792)
Q Consensus 688 spdg~~L-as~s~d~I~IwDl~s~ 710 (792)
+|+|.-| ++-+.+.|++||+..+
T Consensus 282 npNGtElLvs~~gEhVYlfdvn~~ 305 (758)
T KOG1310|consen 282 NPNGTELLVSWGGEHVYLFDVNED 305 (758)
T ss_pred CCCCcEEEEeeCCeEEEEEeecCC
Confidence 9999754 4445559999999765
No 201
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.66 E-value=5e-14 Score=143.55 Aligned_cols=269 Identities=14% Similarity=0.204 Sum_probs=197.8
Q ss_pred CCeEEEEEcCCCCEEEEE-eCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCC-eEEEEeCCCcEEEEeCCCCCcee
Q 003840 513 SKVICCHFSSDGKLLATG-GHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP-RLATSSFDKTVRVWDADNPGYSL 590 (792)
Q Consensus 513 ~~V~~lafspdg~~Lasg-s~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~-~Lasgs~Dg~V~IWdl~s~~~~i 590 (792)
+.|.-+.|..|..+++++ ..|+.|.+|++...+-...+......+..++|+|||+ .|.+...|-.|.||.+.+.. .
T Consensus 49 dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~--~ 126 (447)
T KOG4497|consen 49 DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQK--G 126 (447)
T ss_pred HHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccce--e
Confidence 447778888887766654 5678999999999888889999999999999999996 56677889999999998732 2
Q ss_pred EEecccCCCeEEEEEcCCCCeEEEEEeC-----------------------------------CCcEEEEEcCCCeeEEE
Q 003840 591 RTFMGHSASVMSLDFHPNKDDLICSCDG-----------------------------------DGEIRYWSINNGSCTRV 635 (792)
Q Consensus 591 ~~~~~h~~~V~sl~fspd~~~ll~sgs~-----------------------------------Dg~I~iwdl~~~~~~~~ 635 (792)
..+.-.+..+..++|++||.+..+..-. +..+.+||.--.-.+..
T Consensus 127 ~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~a 206 (447)
T KOG4497|consen 127 YLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYA 206 (447)
T ss_pred EEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeee
Confidence 3333344556889999998754432222 22344555332222222
Q ss_pred ee--CCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEE---------------------------------------
Q 003840 636 FK--GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLS--------------------------------------- 674 (792)
Q Consensus 636 ~~--~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~--------------------------------------- 674 (792)
++ .++..+.|+|.+..+++|+.|+.++|.+--+.+....
T Consensus 207 Ye~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a 286 (447)
T KOG4497|consen 207 YERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEA 286 (447)
T ss_pred eeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCcccc
Confidence 22 4677799999999999999999888764322211110
Q ss_pred ---------------------ec------CCCCCeEEEEEcCCCCEEEEEeCC---eEEEEECCCCCCcceEEEeecCCC
Q 003840 675 ---------------------LQ------GHTKPIDSVCWDPSGELLASVSED---SVRVWTVGSGSEGECVHELSCNGN 724 (792)
Q Consensus 675 ---------------------l~------~h~~~V~sv~~spdg~~Las~s~d---~I~IwDl~s~~~~~~i~~~~~~~~ 724 (792)
++ ...-.+.-++|++|..|+++-.+. .+-+||+... .+..+-....
T Consensus 287 ~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l----~l~avLiQk~ 362 (447)
T KOG4497|consen 287 HIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNL----KLHAVLIQKH 362 (447)
T ss_pred CccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhh----hhhhhhhhcc
Confidence 00 001225568999999999998877 6899999764 2333334567
Q ss_pred ceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEeCCCc
Q 003840 725 KFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKF 787 (792)
Q Consensus 725 ~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~~~~~h~~~V~sl~fspdg~~LaSgs~DG~ 787 (792)
+|....|+|....|+++.....+++|......++......-.|..+.|.-+|..++.++.|..
T Consensus 363 piraf~WdP~~prL~vctg~srLY~W~psg~~~V~vP~~GF~i~~l~W~~~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 363 PIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGVPKKGFNIQKLQWLQPGEFIVLCGKDAF 425 (447)
T ss_pred ceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEecCCCCceeeeEEecCCCcEEEEEcCCce
Confidence 899999999999999999888999999998888877777788999999999999999998864
No 202
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.65 E-value=3e-14 Score=153.35 Aligned_cols=242 Identities=15% Similarity=0.196 Sum_probs=163.8
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEECCCCcee----EEeccCCCCEEEEEE-----CCCCCeEEEEeCCCcEEEEeCC
Q 003840 514 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSK----TNLEEHSSLITDVRF-----SPSMPRLATSSFDKTVRVWDAD 584 (792)
Q Consensus 514 ~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~----~~l~~h~~~V~~i~f-----spdg~~Lasgs~Dg~V~IWdl~ 584 (792)
.++...++-.|++|+..- ...+++|++..+..+ ....-.....+|=+| .+++--|+.|-.-|.|.++|..
T Consensus 125 ~~~~~~~~~~gd~lcFnv-g~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~ 203 (636)
T KOG2394|consen 125 IVTNTNQSGKGDRLCFNV-GRELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPI 203 (636)
T ss_pred ceeeccccCCCCEEEEec-CCeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecch
Confidence 345555566667766553 346888887643211 111111122333344 3455578888888889998876
Q ss_pred CCCceeEEec----ccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCCee--EEEEecCCCEEEEEEcC
Q 003840 585 NPGYSLRTFM----GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTA--QMRFQPHLGRYLAAAAE 658 (792)
Q Consensus 585 s~~~~i~~~~----~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~--~v~~sp~~~~lla~s~d 658 (792)
. ....+.+. -.+..|+||.|-|.++.+|+++-.+|.+++||.+. ..... +....+++..+......
T Consensus 204 ~-~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~-------~~~~t~p~~~~~k~~~~f~i~t~k 275 (636)
T KOG2394|consen 204 N-FEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEI-------VCGATAPSYQALKDGDQFAILTSK 275 (636)
T ss_pred h-hHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccc-------cccCCCCcccccCCCCeeEEeeee
Confidence 5 22111111 13478999999999999999999999999998721 11111 11122233333222111
Q ss_pred CeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCE
Q 003840 659 NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPS 737 (792)
Q Consensus 659 g~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~ 737 (792)
...+..++..+.-..+.|..++|+|||++||+.+.| .++|||+.+. +.+..++.-.+...||+|+|||+|
T Consensus 276 ------sk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~---eLlg~mkSYFGGLLCvcWSPDGKy 346 (636)
T KOG2394|consen 276 ------SKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQ---ELLGVMKSYFGGLLCVCWSPDGKY 346 (636)
T ss_pred ------ccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHH---HHHHHHHhhccceEEEEEcCCccE
Confidence 111223444444455689999999999999999999 9999999765 555555556678999999999999
Q ss_pred EEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEe
Q 003840 738 LLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVS 773 (792)
Q Consensus 738 L~sgs~dg~I~IwDl~~~~~~-~~~~h~~~V~sl~fs 773 (792)
|++|+.|.-|.||.+.+.+++ .-.+|+.+|+.|+|+
T Consensus 347 IvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFD 383 (636)
T KOG2394|consen 347 IVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFD 383 (636)
T ss_pred EEecCCcceEEEEEeccceEEEeccccccceeeEeec
Confidence 999999999999999999988 567999999999998
No 203
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.65 E-value=7.4e-14 Score=158.21 Aligned_cols=232 Identities=14% Similarity=0.148 Sum_probs=168.1
Q ss_pred CeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeC---CCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCC
Q 003840 534 KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF---DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKD 610 (792)
Q Consensus 534 g~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~---Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~ 610 (792)
..|.+||.+.... ..+..+...+.+.+|+|||+.|+..+. +..|++||+.+ +. ...+....+.+..+.|+|||+
T Consensus 179 ~~l~~~d~dg~~~-~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~-G~-~~~l~~~~~~~~~~~~SPDG~ 255 (429)
T PRK03629 179 YELRVSDYDGYNQ-FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLAN-GA-VRQVASFPRHNGAPAFSPDGS 255 (429)
T ss_pred eeEEEEcCCCCCC-EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCC-CC-eEEccCCCCCcCCeEECCCCC
Confidence 4789999875543 445556778999999999998887643 35699999976 32 223333344456789999999
Q ss_pred eEEEEEeCCC--cEEEEEcCCCeeEEEeeC--CeeEEEEecCCCEEEEEEcC-C--eEEEEECCCCeEEEEecCCCCCeE
Q 003840 611 DLICSCDGDG--EIRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYLAAAAE-N--VVSILDAETQACRLSLQGHTKPID 683 (792)
Q Consensus 611 ~ll~sgs~Dg--~I~iwdl~~~~~~~~~~~--~~~~v~~sp~~~~lla~s~d-g--~I~i~D~~t~~~~~~l~~h~~~V~ 683 (792)
.++++.+.+| .|++||+.+++....... ......|+|+++.|+.++.+ + .|+++|+.++... .+..+...+.
T Consensus 256 ~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~ 334 (429)
T PRK03629 256 KLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQ 334 (429)
T ss_pred EEEEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-EeecCCCCcc
Confidence 8887766666 489999998876655433 45678999999999887764 3 5666687776543 3333444566
Q ss_pred EEEEcCCCCEEEEEeCC----eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCC---eEEEEECCCCc
Q 003840 684 SVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ---SLELWNMSENK 756 (792)
Q Consensus 684 sv~~spdg~~Las~s~d----~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg---~I~IwDl~~~~ 756 (792)
+.+|+|||++|+..+.+ .|++||+.++.. ..+.. ........|+|||++|+.++.++ .++++++....
T Consensus 335 ~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~----~~Lt~-~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~ 409 (429)
T PRK03629 335 DADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV----QVLTD-TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRF 409 (429)
T ss_pred CEEECCCCCEEEEEEccCCCceEEEEECCCCCe----EEeCC-CCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCC
Confidence 78999999998876543 588999977632 22221 12234678999999999998876 47888997777
Q ss_pred EEEEcccCCCeEEEEEeC
Q 003840 757 TMTLTAHEGLIAALAVST 774 (792)
Q Consensus 757 ~~~~~~h~~~V~sl~fsp 774 (792)
...+..|.+.+...+|+|
T Consensus 410 ~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 410 KARLPATDGQVKFPAWSP 427 (429)
T ss_pred eEECccCCCCcCCcccCC
Confidence 777888889999999987
No 204
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.64 E-value=8.5e-14 Score=158.26 Aligned_cols=280 Identities=22% Similarity=0.259 Sum_probs=198.5
Q ss_pred eecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCC---eEEEEeCCCcEEEEeCC
Q 003840 508 VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP---RLATSSFDKTVRVWDAD 584 (792)
Q Consensus 508 l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~---~Lasgs~Dg~V~IWdl~ 584 (792)
+.+.+..-..-.||+|+++++... +..|.||.+.++.++..+++|...++.+.+.|... ++++++.||.|++||..
T Consensus 12 lgg~n~~~~~avfSnD~k~l~~~~-~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~ 90 (792)
T KOG1963|consen 12 LGGRNGNKSPAVFSNDAKFLFLCT-GNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWS 90 (792)
T ss_pred eccccceecccccccCCcEEEEee-CCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCC
Confidence 334444444556999999888876 56899999999999999999999999999988544 67899999999999998
Q ss_pred CCCceeEEecccCCCeEEEEEcC---CCCeEEEEEeCCC------------cEEEEEcCCCeeEE-Ee-eCC--eeEEEE
Q 003840 585 NPGYSLRTFMGHSASVMSLDFHP---NKDDLICSCDGDG------------EIRYWSINNGSCTR-VF-KGG--TAQMRF 645 (792)
Q Consensus 585 s~~~~i~~~~~h~~~V~sl~fsp---d~~~ll~sgs~Dg------------~I~iwdl~~~~~~~-~~-~~~--~~~v~~ 645 (792)
. +..++++..+ ..|..+.+.| +....++.+..|. .++-+.+.+....+ .+ +.. ..++.+
T Consensus 91 ~-~~Llkt~~~~-~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~ 168 (792)
T KOG1963|consen 91 D-GELLKTFDNN-LPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVD 168 (792)
T ss_pred C-cEEEEEEecC-CceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEE
Confidence 7 6667766643 3344443322 1111111222221 11111111111000 00 111 244555
Q ss_pred ecCCCEEEEEEcCCeEEEEECCCCeEEE----EecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCC-CCCcceEEEe
Q 003840 646 QPHLGRYLAAAAENVVSILDAETQACRL----SLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGS-GSEGECVHEL 719 (792)
Q Consensus 646 sp~~~~lla~s~dg~I~i~D~~t~~~~~----~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s-~~~~~~i~~~ 719 (792)
++. +.+.....+..+++|+..+..... .-..|...++|++++|++++++++..| .|.+|.--. .........+
T Consensus 169 ~~~-ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~l 247 (792)
T KOG1963|consen 169 NNS-GEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLL 247 (792)
T ss_pred cCC-ceEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEE
Confidence 555 455555566677888877754111 112367779999999999999999988 999996543 2333455667
Q ss_pred ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEe
Q 003840 720 SCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLW 791 (792)
Q Consensus 720 ~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IW 791 (792)
.-|...|.+++|+++|.+|++||.++.+.+|.+.+++...+..-.++|..+.++||+.+.+....|+.|.+-
T Consensus 248 HWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li 319 (792)
T KOG1963|consen 248 HWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLI 319 (792)
T ss_pred EecccccceeEEecCCceEeecccceEEEEEeecCCCcccccccCCeeEEEEEcCCCCeEEEEecCceEEEE
Confidence 778899999999999999999999999999999999977777888999999999999999999999998764
No 205
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.64 E-value=1.8e-13 Score=148.72 Aligned_cols=268 Identities=17% Similarity=0.283 Sum_probs=189.1
Q ss_pred CeEEEEEcCCCCEEEEEe-----C-----CCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeC
Q 003840 514 KVICCHFSSDGKLLATGG-----H-----DKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDA 583 (792)
Q Consensus 514 ~V~~lafspdg~~Lasgs-----~-----Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl 583 (792)
.++++.|+|.|++|.+-- . .-.+.+|+++++.....+......-+++.|+.|..+. +=-..+.|.+|++
T Consensus 75 ~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~-arlv~nev~f~~~ 153 (566)
T KOG2315|consen 75 KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNGWVPQFSIDESLA-ARLVSNEVQFYDL 153 (566)
T ss_pred eeeeeeecccccccccccccccccCCCCCCCceeeeeeccceehhheehhhhcCcccccccchhhh-hhhhcceEEEEec
Confidence 799999999999998621 1 2457899999966555555433333789999887543 2233456999999
Q ss_pred CCCCceeEEecccCCCeEEEEEcCCCC-eEEEE-----EeCCCcEEEEEcCCCee------EEEeeCCeeEEEEecCCCE
Q 003840 584 DNPGYSLRTFMGHSASVMSLDFHPNKD-DLICS-----CDGDGEIRYWSINNGSC------TRVFKGGTAQMRFQPHLGR 651 (792)
Q Consensus 584 ~s~~~~i~~~~~h~~~V~sl~fspd~~-~ll~s-----gs~Dg~I~iwdl~~~~~------~~~~~~~~~~v~~sp~~~~ 651 (792)
.+.......+ |...|+.+.++|... ..+|+ .+.-+.|+||.+..... ...|+.....+.|+..+.-
T Consensus 154 ~~f~~~~~kl--~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~ 231 (566)
T KOG2315|consen 154 GSFKTIQHKL--SVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTA 231 (566)
T ss_pred CCccceeeee--eccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCce
Confidence 8744333333 567899999998743 33332 24456799998873322 1234556667888888776
Q ss_pred EEEEEc------------CCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC---eEEEEECCCCCCcceE
Q 003840 652 YLAAAA------------ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED---SVRVWTVGSGSEGECV 716 (792)
Q Consensus 652 lla~s~------------dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d---~I~IwDl~s~~~~~~i 716 (792)
|++... +..++++++....++..+. ..++|.+++|+++++-++++..- .+.|||++- .
T Consensus 232 LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~------~ 304 (566)
T KOG2315|consen 232 LLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG------K 304 (566)
T ss_pred EEEEEEEeecCCCccccccceEEEEEecCceEEEecC-CCCCceEEEECCCCCEEEEEEecccceEEEEcCCC------C
Confidence 544322 2378888888556665555 57899999999999877665543 899999853 3
Q ss_pred EEeecCCCceEEEEEeCCCCEEEEEEcC---CeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEeC------CCc
Q 003840 717 HELSCNGNKFHSCVFHPTYPSLLVIGCY---QSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASH------DKF 787 (792)
Q Consensus 717 ~~~~~~~~~i~si~fspdg~~L~sgs~d---g~I~IwDl~~~~~~~~~~h~~~V~sl~fspdg~~LaSgs~------DG~ 787 (792)
-.+....++-.++-|+|.|++|+.+|-+ |.|.|||+.+.+++.-..-. .-+-+.|+|||.+|+|+.. |+.
T Consensus 305 ~v~df~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~-~tt~~eW~PdGe~flTATTaPRlrvdNg 383 (566)
T KOG2315|consen 305 PVFDFPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAA-NTTVFEWSPDGEYFLTATTAPRLRVDNG 383 (566)
T ss_pred EeEeCCCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccC-CceEEEEcCCCcEEEEEeccccEEecCC
Confidence 3344456778899999999999998876 69999999997777433322 2455789999999998874 788
Q ss_pred EEEeC
Q 003840 788 VKLWK 792 (792)
Q Consensus 788 I~IWd 792 (792)
++||+
T Consensus 384 ~Kiwh 388 (566)
T KOG2315|consen 384 IKIWH 388 (566)
T ss_pred eEEEE
Confidence 99995
No 206
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.63 E-value=9.1e-13 Score=134.49 Aligned_cols=229 Identities=17% Similarity=0.261 Sum_probs=163.4
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCC--EEEEEECCCCCeEEE-EeCC------CcEEEEeCC
Q 003840 514 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSL--ITDVRFSPSMPRLAT-SSFD------KTVRVWDAD 584 (792)
Q Consensus 514 ~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~--V~~i~fspdg~~Las-gs~D------g~V~IWdl~ 584 (792)
....++|+-|...+++|..+| .+||+++..+.......+.+. +..+-| ..++|+. |+.+ ..|.|||-.
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLf--R~N~laLVGGg~~pky~pNkviIWDD~ 83 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLF--RSNYLALVGGGSRPKYPPNKVIIWDDL 83 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhh--hhceEEEecCCCCCCCCCceEEEEecc
Confidence 355699999999999997665 899999875554433333332 223333 2334443 3333 469999944
Q ss_pred CCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcC-CCeeEEEeeC---CeeEEEEecCCCE-EEE--EEc
Q 003840 585 NPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN-NGSCTRVFKG---GTAQMRFQPHLGR-YLA--AAA 657 (792)
Q Consensus 585 s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~-~~~~~~~~~~---~~~~v~~sp~~~~-lla--~s~ 657 (792)
. ..++.++. ...+|.+|.+.++ +++++ .++.|++|... ..+.++.++. +..-+++.|..+. +++ |..
T Consensus 84 k-~~~i~el~-f~~~I~~V~l~r~--riVvv--l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k 157 (346)
T KOG2111|consen 84 K-ERCIIELS-FNSEIKAVKLRRD--RIVVV--LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFK 157 (346)
T ss_pred c-CcEEEEEE-eccceeeEEEcCC--eEEEE--ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCc
Confidence 3 56666655 6788999999876 34433 38899999987 4455555432 3334445554443 333 223
Q ss_pred CCeEEEEECCCCeE--EEEecCCCCCeEEEEEcCCCCEEEEEeCC--eEEEEECCCCCCcceEEEeecC--CCceEEEEE
Q 003840 658 ENVVSILDAETQAC--RLSLQGHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSCN--GNKFHSCVF 731 (792)
Q Consensus 658 dg~I~i~D~~t~~~--~~~l~~h~~~V~sv~~spdg~~Las~s~d--~I~IwDl~s~~~~~~i~~~~~~--~~~i~si~f 731 (792)
-|.|.|.|+...+. ...+.+|...|.|++.+-+|.+||+++.. -|+|||..++ ..+.++.-. ...|.+++|
T Consensus 158 ~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g---~~l~E~RRG~d~A~iy~iaF 234 (346)
T KOG2111|consen 158 TGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDG---TLLQELRRGVDRADIYCIAF 234 (346)
T ss_pred cceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCC---cEeeeeecCCchheEEEEEe
Confidence 68999999987765 47788999999999999999999999987 7999999988 555555432 345999999
Q ss_pred eCCCCEEEEEEcCCeEEEEECCC
Q 003840 732 HPTYPSLLVIGCYQSLELWNMSE 754 (792)
Q Consensus 732 spdg~~L~sgs~dg~I~IwDl~~ 754 (792)
+|+..+|++++..|+|+||.++.
T Consensus 235 Sp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 235 SPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred CCCccEEEEEcCCCeEEEEEeec
Confidence 99999999999999999998865
No 207
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.62 E-value=8.1e-14 Score=151.06 Aligned_cols=275 Identities=14% Similarity=0.164 Sum_probs=204.6
Q ss_pred cCCCCeEEEEEcCCCCEE-EEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCc
Q 003840 510 ASTSKVICCHFSSDGKLL-ATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGY 588 (792)
Q Consensus 510 ~H~~~V~~lafspdg~~L-asgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~ 588 (792)
+|...-+.|..+|||+|+ |+|.+.-.|++||+........-.-....|.-+-++.|-..++.-..|.+|-+..... .
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G--~ 126 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYG--R 126 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcC--e
Confidence 466677889999999975 5677888999999998776655444556677777777777788888888887765432 1
Q ss_pred eeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee---CCeeEEEEecCCCEEEEEEcCCeEEEEE
Q 003840 589 SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLGRYLAAAAENVVSILD 665 (792)
Q Consensus 589 ~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~---~~~~~v~~sp~~~~lla~s~dg~I~i~D 665 (792)
-..+- ....-.+++++.-.-.++ .++....|+-++++.|..+..|. +.++++..++..+.|++|+.+|.|.+||
T Consensus 127 hy~~R--IP~~GRDm~y~~~scDly-~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwD 203 (703)
T KOG2321|consen 127 HYRTR--IPKFGRDMKYHKPSCDLY-LVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWD 203 (703)
T ss_pred eeeee--cCcCCccccccCCCccEE-EeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEec
Confidence 11111 122334666665544555 44456789999999999887765 5678889999999999999999999999
Q ss_pred CCCCeEEEEecC------CCC-----CeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeC
Q 003840 666 AETQACRLSLQG------HTK-----PIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHP 733 (792)
Q Consensus 666 ~~t~~~~~~l~~------h~~-----~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fsp 733 (792)
.++...+.++.. |.+ .|+++.|+.+|-.+++|+.. .|.|||+++... .+..-.....+|..+.|.+
T Consensus 204 pR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~p--l~~kdh~~e~pi~~l~~~~ 281 (703)
T KOG2321|consen 204 PRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKP--LLVKDHGYELPIKKLDWQD 281 (703)
T ss_pred chhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCc--eeecccCCccceeeecccc
Confidence 998766555432 333 39999999999999999988 999999997632 2233334456788899977
Q ss_pred CCC-EEEEEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEe
Q 003840 734 TYP-SLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLW 791 (792)
Q Consensus 734 dg~-~L~sgs~dg~I~IwDl~~~~~~~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IW 791 (792)
.+. ..++......++|||-.+++.+........++.+|+-|++.++++|.+++.+..|
T Consensus 282 ~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~Ane~~~m~~y 340 (703)
T KOG2321|consen 282 TDQQNKVVSMDKRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTANESSKMHTY 340 (703)
T ss_pred cCCCceEEecchHHhhhcccccCCceeeccccCCcCceeeecCCceEEEecCCCcceeE
Confidence 532 2333344468999999999999888778889999999999999999988776543
No 208
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.62 E-value=2.4e-13 Score=154.63 Aligned_cols=232 Identities=16% Similarity=0.227 Sum_probs=167.5
Q ss_pred CeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeC---CCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCC
Q 003840 534 KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF---DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKD 610 (792)
Q Consensus 534 g~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~---Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~ 610 (792)
..|++||.+. .....+..|...+.+.+|+|||+.|+..+. +..|++||+.++ . ...+..+.+.+.+.+|+|||+
T Consensus 182 ~~l~~~d~dg-~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g-~-~~~l~~~~g~~~~~~~SPDG~ 258 (435)
T PRK05137 182 KRLAIMDQDG-ANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETG-Q-RELVGNFPGMTFAPRFSPDGR 258 (435)
T ss_pred eEEEEECCCC-CCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCC-c-EEEeecCCCcccCcEECCCCC
Confidence 4788999854 455667778889999999999999888764 467999999863 3 244555667788999999999
Q ss_pred eEEEEEeCCCc--EEEEEcCCCeeEEEeeC--CeeEEEEecCCCEEEEEEc-C--CeEEEEECCCCeEEEEecCCCCCeE
Q 003840 611 DLICSCDGDGE--IRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYLAAAA-E--NVVSILDAETQACRLSLQGHTKPID 683 (792)
Q Consensus 611 ~ll~sgs~Dg~--I~iwdl~~~~~~~~~~~--~~~~v~~sp~~~~lla~s~-d--g~I~i~D~~t~~~~~~l~~h~~~V~ 683 (792)
.++++.+.++. |++||+.++........ ......|+|++.+++.++. + ..|++||+.++.... +..+...+.
T Consensus 259 ~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~-lt~~~~~~~ 337 (435)
T PRK05137 259 KVVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRR-ISFGGGRYS 337 (435)
T ss_pred EEEEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEE-eecCCCccc
Confidence 88888877765 77889988776554332 2456899999999887775 3 368899987765543 333345567
Q ss_pred EEEEcCCCCEEEEEeCC----eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcC------CeEEEEECC
Q 003840 684 SVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY------QSLELWNMS 753 (792)
Q Consensus 684 sv~~spdg~~Las~s~d----~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~d------g~I~IwDl~ 753 (792)
...|+|||++|+..+.+ .|.+||+..+. ...+.. ...+..+.|+|||++|+..+.+ ..|+++|+.
T Consensus 338 ~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~----~~~lt~-~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~ 412 (435)
T PRK05137 338 TPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG----ERILTS-GFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLT 412 (435)
T ss_pred CeEECCCCCEEEEEEcCCCceEEEEEECCCCc----eEeccC-CCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECC
Confidence 78999999999876543 68888875432 222222 2346778999999998876653 268888988
Q ss_pred CCcEEEEcccCCCeEEEEEeCC
Q 003840 754 ENKTMTLTAHEGLIAALAVSTE 775 (792)
Q Consensus 754 ~~~~~~~~~h~~~V~sl~fspd 775 (792)
++....+. ..+.+...+|+|-
T Consensus 413 g~~~~~l~-~~~~~~~p~Wsp~ 433 (435)
T PRK05137 413 GRNEREVP-TPGDASDPAWSPL 433 (435)
T ss_pred CCceEEcc-CCCCccCcccCCC
Confidence 77665444 3555777888763
No 209
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.62 E-value=7.9e-15 Score=154.56 Aligned_cols=191 Identities=23% Similarity=0.272 Sum_probs=152.3
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEec-
Q 003840 516 ICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM- 594 (792)
Q Consensus 516 ~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~- 594 (792)
.+++|+.||..|++|+.||++|||++.....+.....|...|.++.|+||+++|++-+.| ..+||+++++ ..+....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g-~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTG-AALARKTP 225 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccC-chhhhcCC
Confidence 789999999999999999999999999988888888999999999999999999999999 8999999984 4443333
Q ss_pred -ccCCCeEEEEEcCCC---Ce-EEEEEeCCCcEEEEEcCCCee---E---EEe--eCCeeEEEEecCCCEEEEEEcCCeE
Q 003840 595 -GHSASVMSLDFHPNK---DD-LICSCDGDGEIRYWSINNGSC---T---RVF--KGGTAQMRFQPHLGRYLAAAAENVV 661 (792)
Q Consensus 595 -~h~~~V~sl~fspd~---~~-ll~sgs~Dg~I~iwdl~~~~~---~---~~~--~~~~~~v~~sp~~~~lla~s~dg~I 661 (792)
.....+..+.|..++ .. +++.-..-+.|+.||+...+. . +.. ...+.+++.+.++++++.|+.||.|
T Consensus 226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsV 305 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSV 305 (398)
T ss_pred cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcE
Confidence 233445667787664 22 333334456677776653222 1 111 2368899999999999999999999
Q ss_pred EEEECCCCeEEEEec-CCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECC
Q 003840 662 SILDAETQACRLSLQ-GHTKPIDSVCWDPSGELLASVSED-SVRVWTVG 708 (792)
Q Consensus 662 ~i~D~~t~~~~~~l~-~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~ 708 (792)
.||+..+.+++...+ .|...|+.+.|+||.+++++.+.+ .+.|..+.
T Consensus 306 ai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 306 AIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLA 354 (398)
T ss_pred EEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEe
Confidence 999999987776554 599999999999999999998888 77777664
No 210
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.61 E-value=6.3e-14 Score=142.81 Aligned_cols=271 Identities=18% Similarity=0.198 Sum_probs=192.3
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEE-eCCCcEEEEeCCCCCceeEEecc
Q 003840 517 CCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATS-SFDKTVRVWDADNPGYSLRTFMG 595 (792)
Q Consensus 517 ~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasg-s~Dg~V~IWdl~s~~~~i~~~~~ 595 (792)
-++|||+|+++|+++.- .+.|-|.++......+.. -..|.-|.|..|..+++++ ..|+.|.+|++... +-...+..
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~c-ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qp-ew~ckIde 89 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLC-LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQP-EWYCKIDE 89 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHH-HHHhhheeeeccceeeeeeeeccceEEEEEeecc-eeEEEecc
Confidence 46899999999999855 788888888765554432 4567788999887766555 66889999999873 44455666
Q ss_pred cCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEE--eeCCeeEEEEecCCCEEEEEEc----------------
Q 003840 596 HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV--FKGGTAQMRFQPHLGRYLAAAA---------------- 657 (792)
Q Consensus 596 h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~--~~~~~~~v~~sp~~~~lla~s~---------------- 657 (792)
....+.+++|+|||++++.+...|-.|.+|.+.+.++... .+.....++|++++.+.+..+.
T Consensus 90 g~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ 169 (447)
T KOG4497|consen 90 GQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWI 169 (447)
T ss_pred CCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHH
Confidence 7788999999999999999999999999999998765533 3444556677777655444332
Q ss_pred --------------------CCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCC-----
Q 003840 658 --------------------ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGS----- 711 (792)
Q Consensus 658 --------------------dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~----- 711 (792)
+..+.|||.--...+..+. ..-.+..++|+|.+.+|+.|+.| .++|.+--+.+
T Consensus 170 ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe-~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~ef 248 (447)
T KOG4497|consen 170 LLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYE-RGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEF 248 (447)
T ss_pred HHHhcCCCcccccCceECCCCcEEEEecchhhheeeeee-eccceeEEEeccccceEEeeccchhhhhhceeeeeehhhh
Confidence 1234445533222222221 22458889999999999999999 77664321100
Q ss_pred ------------------------------------------C----------cceEEEee------cCCCceEEEEEeC
Q 003840 712 ------------------------------------------E----------GECVHELS------CNGNKFHSCVFHP 733 (792)
Q Consensus 712 ------------------------------------------~----------~~~i~~~~------~~~~~i~si~fsp 733 (792)
. ...+..++ ...-.+..++|++
T Consensus 249 lhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~ 328 (447)
T KOG4497|consen 249 LHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSC 328 (447)
T ss_pred ccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecC
Confidence 0 00000111 1122356789999
Q ss_pred CCCEEEEEEcC--CeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEe
Q 003840 734 TYPSLLVIGCY--QSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLW 791 (792)
Q Consensus 734 dg~~L~sgs~d--g~I~IwDl~~~~~~~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IW 791 (792)
|..++++-.+. +.+.+||+...+...+.....+|....|+|....|+.+....++++|
T Consensus 329 Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~piraf~WdP~~prL~vctg~srLY~W 388 (447)
T KOG4497|consen 329 DSTYAATRNDKYPNALWLWDLQNLKLHAVLIQKHPIRAFEWDPGRPRLVVCTGKSRLYFW 388 (447)
T ss_pred CceEEeeecCCCCceEEEEechhhhhhhhhhhccceeEEEeCCCCceEEEEcCCceEEEE
Confidence 99988887655 58999999999888777778899999999998888888777788888
No 211
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.60 E-value=1.9e-13 Score=155.25 Aligned_cols=232 Identities=17% Similarity=0.149 Sum_probs=166.3
Q ss_pred CeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCC---CcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCC
Q 003840 534 KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD---KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKD 610 (792)
Q Consensus 534 g~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~D---g~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~ 610 (792)
..|++||.+. .....+..+...+.+.+|+||++.|+.++.+ ..|++||+.+ +.. ..+..+.+...++.|+|+++
T Consensus 184 ~~l~i~D~~g-~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~-g~~-~~l~~~~g~~~~~~~SpDG~ 260 (433)
T PRK04922 184 YALQVADSDG-YNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLAT-GQR-ELVASFRGINGAPSFSPDGR 260 (433)
T ss_pred EEEEEECCCC-CCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCC-CCE-EEeccCCCCccCceECCCCC
Confidence 4689999864 4455666777889999999999999888744 3699999976 332 33334455566889999999
Q ss_pred eEEEEEeCCC--cEEEEEcCCCeeEEEeeC--CeeEEEEecCCCEEEEEEc-CC--eEEEEECCCCeEEEEecCCCCCeE
Q 003840 611 DLICSCDGDG--EIRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYLAAAA-EN--VVSILDAETQACRLSLQGHTKPID 683 (792)
Q Consensus 611 ~ll~sgs~Dg--~I~iwdl~~~~~~~~~~~--~~~~v~~sp~~~~lla~s~-dg--~I~i~D~~t~~~~~~l~~h~~~V~ 683 (792)
.++++.+.+| .|++||+.+++....... .....+|+|++.++++++. ++ .|+++|+.+++..... .+.....
T Consensus 261 ~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt-~~g~~~~ 339 (433)
T PRK04922 261 RLALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLT-FQGNYNA 339 (433)
T ss_pred EEEEEEeCCCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEee-cCCCCcc
Confidence 8887777666 599999998876543322 2356899999999888775 33 4777888776543322 2334455
Q ss_pred EEEEcCCCCEEEEEeCC----eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcC---CeEEEEECCCCc
Q 003840 684 SVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY---QSLELWNMSENK 756 (792)
Q Consensus 684 sv~~spdg~~Las~s~d----~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~d---g~I~IwDl~~~~ 756 (792)
.++|+|||++|+..+.+ .|.+||+.++.. . .+. +......+.|+|||++|+..+.+ ..|+++++..+.
T Consensus 340 ~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~---~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~ 414 (433)
T PRK04922 340 RASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSV---R-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGRV 414 (433)
T ss_pred CEEECCCCCEEEEEECCCCceeEEEEECCCCCe---E-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCc
Confidence 78999999998876532 699999976532 1 222 22234567999999998887764 368889997766
Q ss_pred EEEEcccCCCeEEEEEeC
Q 003840 757 TMTLTAHEGLIAALAVST 774 (792)
Q Consensus 757 ~~~~~~h~~~V~sl~fsp 774 (792)
...+..+.+.+...+|+|
T Consensus 415 ~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 415 RQRLVSADGEVREPAWSP 432 (433)
T ss_pred eEEcccCCCCCCCCccCC
Confidence 666666677788888876
No 212
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.60 E-value=1.7e-14 Score=157.01 Aligned_cols=238 Identities=14% Similarity=0.235 Sum_probs=169.9
Q ss_pred EcCCCCEEEE--EeCCCeEEEEECCC-CceeEE-ec--cCCCCEEEEEECC-CCCeEEEEeCCCcEEEEeCCCCC-----
Q 003840 520 FSSDGKLLAT--GGHDKKAVLWHTDT-LKSKTN-LE--EHSSLITDVRFSP-SMPRLATSSFDKTVRVWDADNPG----- 587 (792)
Q Consensus 520 fspdg~~Las--gs~Dg~I~vWdl~t-~~~~~~-l~--~h~~~V~~i~fsp-dg~~Lasgs~Dg~V~IWdl~s~~----- 587 (792)
|+.+.+++|+ .+..|.|-||++.. |+.... +. .....|+++.|.| |...|++++.||.|+||.+..++
T Consensus 587 fcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~ 666 (1012)
T KOG1445|consen 587 FCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENE 666 (1012)
T ss_pred eeeccceEEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCccc
Confidence 3344556665 45678999999874 222211 11 2456799999999 77799999999999999997644
Q ss_pred -ceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee---CCeeEEEEecCCCEEEEEEcCCeEEE
Q 003840 588 -YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLGRYLAAAAENVVSI 663 (792)
Q Consensus 588 -~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~---~~~~~v~~sp~~~~lla~s~dg~I~i 663 (792)
.+...++.|...|++|.|+|-...++++++.|-+|++||+.+++....+. +.+..++|+|+|..+++.+.||.|++
T Consensus 667 ~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rV 746 (1012)
T KOG1445|consen 667 MTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRV 746 (1012)
T ss_pred CCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEE
Confidence 34567788999999999999988899999999999999999988766654 45788999999999999999999999
Q ss_pred EECCCCe-EEEEecCC-CCCeEEEEEcCCCCEEEEEeCC-----eEEEEECCCCCCcceEEEee-cCCCceEEEEEeCCC
Q 003840 664 LDAETQA-CRLSLQGH-TKPIDSVCWDPSGELLASVSED-----SVRVWTVGSGSEGECVHELS-CNGNKFHSCVFHPTY 735 (792)
Q Consensus 664 ~D~~t~~-~~~~l~~h-~~~V~sv~~spdg~~Las~s~d-----~I~IwDl~s~~~~~~i~~~~-~~~~~i~si~fspdg 735 (792)
|..++++ .++.-.+- ...--.|.|.-||+++++.+.| .|.+||..+-.. ..+.... .....+.--.+.+|.
T Consensus 747 y~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~-~pl~t~~lDvaps~LvP~YD~Ds 825 (1012)
T KOG1445|consen 747 YEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDL-RPLYTQVLDVAPSPLVPHYDYDS 825 (1012)
T ss_pred eCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccC-CcceeeeecccCccccccccCCC
Confidence 9998874 34433321 1223357788899998887766 488888765421 1222111 111112222455565
Q ss_pred CE-EEEEEcCCeEEEEECCCCcEE
Q 003840 736 PS-LLVIGCYQSLELWNMSENKTM 758 (792)
Q Consensus 736 ~~-L~sgs~dg~I~IwDl~~~~~~ 758 (792)
.. |++|-.|..|++|.+-....+
T Consensus 826 ~~lfltGKGD~~v~~yEv~~esPy 849 (1012)
T KOG1445|consen 826 NVLFLTGKGDRFVNMYEVIYESPY 849 (1012)
T ss_pred ceEEEecCCCceEEEEEecCCCce
Confidence 54 556667789999998655443
No 213
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.60 E-value=2.7e-15 Score=167.94 Aligned_cols=241 Identities=20% Similarity=0.235 Sum_probs=182.2
Q ss_pred eeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeC
Q 003840 504 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDA 583 (792)
Q Consensus 504 ~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl 583 (792)
+...++||.+.|+.++.+.+..++|+++.|..|+||.+.++..+..+.+|++.|++|+|+|-. +.+.||++++||.
T Consensus 224 ~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~ 299 (1113)
T KOG0644|consen 224 CLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDA 299 (1113)
T ss_pred hhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhccccceeeeccCccc----cCCCCCceEeccc
Confidence 456688999999999999999999999999999999999999999999999999999999964 7889999999999
Q ss_pred CCCCceeEEe----c-ccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCCeeEEEEecCC-CEEEEEEc
Q 003840 584 DNPGYSLRTF----M-GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHL-GRYLAAAA 657 (792)
Q Consensus 584 ~s~~~~i~~~----~-~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~-~~lla~s~ 657 (792)
+- ..+... . ....-+.++.|...+.. +++++.|+.-..|.+....+.... ..-+.++.+. .+.+++-.
T Consensus 300 r~--~~~~y~prp~~~~~~~~~~s~~~~~~~~~-f~Tgs~d~ea~n~e~~~l~~~~~~---lif~t~ssd~~~~~~~ar~ 373 (1113)
T KOG0644|consen 300 RL--EPRIYVPRPLKFTEKDLVDSILFENNGDR-FLTGSRDGEARNHEFEQLAWRSNL---LIFVTRSSDLSSIVVTARN 373 (1113)
T ss_pred cc--cccccCCCCCCcccccceeeeeccccccc-cccccCCcccccchhhHhhhhccc---eEEEeccccccccceeeee
Confidence 82 111111 0 12345666777666554 559999999988876543221110 0001111122 34455556
Q ss_pred CCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCC-EEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCC
Q 003840 658 ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGE-LLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTY 735 (792)
Q Consensus 658 dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~-~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg 735 (792)
+-.+.+|++.++.....+.+|...+..+.++|-.. +..+++.| ...|||+-.+.. ++.+......+..++|++||
T Consensus 374 ~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~p---ik~y~~gh~kl~d~kFSqdg 450 (1113)
T KOG0644|consen 374 DHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIP---IKHYFIGHGKLVDGKFSQDG 450 (1113)
T ss_pred eeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCc---ceeeecccceeeccccCCCC
Confidence 77899999999999999999999999999999555 44566777 999999987743 33333346778899999999
Q ss_pred CEEEEEEcCCeEEEEECCCCcE
Q 003840 736 PSLLVIGCYQSLELWNMSENKT 757 (792)
Q Consensus 736 ~~L~sgs~dg~I~IwDl~~~~~ 757 (792)
..++....-|.++|+....++.
T Consensus 451 ts~~lsd~hgql~i~g~gqs~s 472 (1113)
T KOG0644|consen 451 TSIALSDDHGQLYILGTGQSKS 472 (1113)
T ss_pred ceEecCCCCCceEEeccCCCcc
Confidence 9999998889999998765543
No 214
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.60 E-value=1.2e-13 Score=144.67 Aligned_cols=237 Identities=16% Similarity=0.184 Sum_probs=158.9
Q ss_pred cceeeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEE
Q 003840 500 FSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVR 579 (792)
Q Consensus 500 ~~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~ 579 (792)
..+...+.+++|...|+.++|++|+.++++++.|..+++||+..|.....+.+|...|..++|.|-+.++++-+.|...+
T Consensus 111 e~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~ 190 (434)
T KOG1009|consen 111 EKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPE 190 (434)
T ss_pred cceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccc
Confidence 44778888999999999999999999999999999999999999999999999999999999999999999999999777
Q ss_pred EEeCCCCCceeEEecccCC-CeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCCeeEEEEecCCCEEEEEEc-
Q 003840 580 VWDADNPGYSLRTFMGHSA-SVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAA- 657 (792)
Q Consensus 580 IWdl~s~~~~i~~~~~h~~-~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~lla~s~- 657 (792)
++.+.... .+. .|.. .+....+.+. .....++|--++. +.-...++|+|++..+++.+.
T Consensus 191 ~~~~~~~~-~~~---~~~~~~m~~~~~~~~---------e~~s~rLfhDeTl------ksFFrRlsfTPdG~llvtPag~ 251 (434)
T KOG1009|consen 191 GFSAKLKQ-VIK---RHGLDIMPAKAFNER---------EGKSTRLFHDETL------KSFFRRLSFTPDGSLLVTPAGL 251 (434)
T ss_pred eeeeeeee-eee---eeeeeEeeecccCCC---------CcceeeeeecCch------hhhhhhcccCCCCcEEEcccce
Confidence 77775411 111 1110 0011111111 0111222221111 112234566666666655432
Q ss_pred ---C-----CeEEEEECCC-CeEEEEecCCCCCeEEEEEcC------------------CCCEEEEEeCCeEEEEECCCC
Q 003840 658 ---E-----NVVSILDAET-QACRLSLQGHTKPIDSVCWDP------------------SGELLASVSEDSVRVWTVGSG 710 (792)
Q Consensus 658 ---d-----g~I~i~D~~t-~~~~~~l~~h~~~V~sv~~sp------------------dg~~Las~s~d~I~IwDl~s~ 710 (792)
. +..++|+-.. .++...+..-..++..+.|+| .+..++.++.+.|+|||..+.
T Consensus 252 ~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svyvydtq~~ 331 (434)
T KOG1009|consen 252 FKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSVYVYDTQTL 331 (434)
T ss_pred eeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeecceEEEeccccc
Confidence 1 2234444332 234444444444444444443 345678888899999999775
Q ss_pred CCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcE
Q 003840 711 SEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKT 757 (792)
Q Consensus 711 ~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~ 757 (792)
....++ -..|...|+.++|++||.++++.+.||...+..++..+.
T Consensus 332 ~P~~~v--~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~el 376 (434)
T KOG1009|consen 332 EPLAVV--DNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWEL 376 (434)
T ss_pred cceEEE--eeeeeeeecceeecCCCcEEEEeccCCceEEEEEcchhc
Confidence 433333 344778899999999999999999999777766655443
No 215
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.60 E-value=9.6e-12 Score=137.07 Aligned_cols=271 Identities=14% Similarity=0.179 Sum_probs=187.2
Q ss_pred ceeeeeeeecCCCCeEEEEEcCCCCEEEEEeC----CCeEEEEECCCC--c--eeEEeccCCCCEEEEEECCCCCeEEEE
Q 003840 501 SFKEANSVRASTSKVICCHFSSDGKLLATGGH----DKKAVLWHTDTL--K--SKTNLEEHSSLITDVRFSPSMPRLATS 572 (792)
Q Consensus 501 ~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~----Dg~I~vWdl~t~--~--~~~~l~~h~~~V~~i~fspdg~~Lasg 572 (792)
.+..+..+. -......+++++++++|+++.. ++.|..|++... . .+............|++++++++|+++
T Consensus 26 ~l~~~~~~~-~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~va 104 (345)
T PF10282_consen 26 TLTLVQTVA-EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVA 104 (345)
T ss_dssp EEEEEEEEE-ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEE
T ss_pred CceEeeeec-CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEE
Confidence 344444422 3455778999999999999877 578999988753 3 333344345667789999999999888
Q ss_pred eC-CCcEEEEeCCCCCceeEE--ec-----------ccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCe--eEE--
Q 003840 573 SF-DKTVRVWDADNPGYSLRT--FM-----------GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS--CTR-- 634 (792)
Q Consensus 573 s~-Dg~V~IWdl~s~~~~i~~--~~-----------~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~--~~~-- 634 (792)
.+ +|.|.+|++...+..... .. .......++.|+|++++++++.-....|++|++.... ...
T Consensus 105 ny~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~ 184 (345)
T PF10282_consen 105 NYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVD 184 (345)
T ss_dssp ETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEE
T ss_pred EccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEee
Confidence 75 899999999875543332 11 1235578999999999888777777889999998765 322
Q ss_pred Eee----CCeeEEEEecCCCEEEEEEc-CCeEEEEECC--CCe--EEEEecCC------CCCeEEEEEcCCCCEEEEEeC
Q 003840 635 VFK----GGTAQMRFQPHLGRYLAAAA-ENVVSILDAE--TQA--CRLSLQGH------TKPIDSVCWDPSGELLASVSE 699 (792)
Q Consensus 635 ~~~----~~~~~v~~sp~~~~lla~s~-dg~I~i~D~~--t~~--~~~~l~~h------~~~V~sv~~spdg~~Las~s~ 699 (792)
.+. .+...+.|+|+++++++..+ ++.|.+|++. ++. .+..+... ......|+++|||++|+++..
T Consensus 185 ~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr 264 (345)
T PF10282_consen 185 SIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNR 264 (345)
T ss_dssp EEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEEC
T ss_pred ccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEec
Confidence 222 34577999999999888776 7789999887 443 22222211 125778999999999988876
Q ss_pred C--eEEEEECC-CCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcC-CeEEEEEC--CCCcEEEEc--ccCCCeEEEE
Q 003840 700 D--SVRVWTVG-SGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY-QSLELWNM--SENKTMTLT--AHEGLIAALA 771 (792)
Q Consensus 700 d--~I~IwDl~-s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~d-g~I~IwDl--~~~~~~~~~--~h~~~V~sl~ 771 (792)
+ .|.+|++. .......+..+.......+.++++|+|++|++++.+ +.|.+|++ .++.+.... ..-....||.
T Consensus 265 ~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~ 344 (345)
T PF10282_consen 265 GSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIV 344 (345)
T ss_dssp TTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEEE
T ss_pred cCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEEEe
Confidence 6 89999994 333456666777667778999999999999998854 68998866 566655332 2334566666
Q ss_pred E
Q 003840 772 V 772 (792)
Q Consensus 772 f 772 (792)
|
T Consensus 345 f 345 (345)
T PF10282_consen 345 F 345 (345)
T ss_dssp E
T ss_pred C
Confidence 5
No 216
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.59 E-value=1.2e-12 Score=148.37 Aligned_cols=203 Identities=15% Similarity=0.194 Sum_probs=147.0
Q ss_pred cEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeC--CCcEEEEEcCCCeeEE--EeeCCeeEEEEecCCCEE
Q 003840 577 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDG--DGEIRYWSINNGSCTR--VFKGGTAQMRFQPHLGRY 652 (792)
Q Consensus 577 ~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~--Dg~I~iwdl~~~~~~~--~~~~~~~~v~~sp~~~~l 652 (792)
.|.+||.+. ...+.+..+...+.+.+|+|||+.++++... +..|++||+.+++... .+.+......|+|++.++
T Consensus 180 ~l~~~d~dg--~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~L 257 (429)
T PRK03629 180 ELRVSDYDG--YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKL 257 (429)
T ss_pred eEEEEcCCC--CCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEE
Confidence 688888874 3334455567789999999999888766533 4579999998886443 345566778999999998
Q ss_pred EEEEc-CC--eEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC----eEEEEECCCCCCcceEEEeecCCCc
Q 003840 653 LAAAA-EN--VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNK 725 (792)
Q Consensus 653 la~s~-dg--~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d----~I~IwDl~s~~~~~~i~~~~~~~~~ 725 (792)
+.... ++ .|++||+++++.... ..+...+...+|+|||+.|+.++++ .|+++|+.++. ...+......
T Consensus 258 a~~~~~~g~~~I~~~d~~tg~~~~l-t~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~----~~~lt~~~~~ 332 (429)
T PRK03629 258 AFALSKTGSLNLYVMDLASGQIRQV-TDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGA----PQRITWEGSQ 332 (429)
T ss_pred EEEEcCCCCcEEEEEECCCCCEEEc-cCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCC----eEEeecCCCC
Confidence 87643 44 699999998876543 3344567889999999988877754 45556765542 2233333445
Q ss_pred eEEEEEeCCCCEEEEEEcCC---eEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEeCCCc
Q 003840 726 FHSCVFHPTYPSLLVIGCYQ---SLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKF 787 (792)
Q Consensus 726 i~si~fspdg~~L~sgs~dg---~I~IwDl~~~~~~~~~~h~~~V~sl~fspdg~~LaSgs~DG~ 787 (792)
....+|+|||++|+..+.++ .|++||+.++....+... .......|+|||++|+.++.|+.
T Consensus 333 ~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~ 396 (429)
T PRK03629 333 NQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTDT-FLDETPSIAPNGTMVIYSSSQGM 396 (429)
T ss_pred ccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeCCC-CCCCCceECCCCCEEEEEEcCCC
Confidence 56789999999998876543 689999998876655432 23457889999999999988765
No 217
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.59 E-value=7.9e-13 Score=146.03 Aligned_cols=242 Identities=14% Similarity=0.150 Sum_probs=160.1
Q ss_pred eEEEEEcCCCCEEEEEe-CCCeEEEEECCCCceeEEeccC-------CCCEEEEEECCCCCeEEEEeC-CCcEEEEeCCC
Q 003840 515 VICCHFSSDGKLLATGG-HDKKAVLWHTDTLKSKTNLEEH-------SSLITDVRFSPSMPRLATSSF-DKTVRVWDADN 585 (792)
Q Consensus 515 V~~lafspdg~~Lasgs-~Dg~I~vWdl~t~~~~~~l~~h-------~~~V~~i~fspdg~~Lasgs~-Dg~V~IWdl~s 585 (792)
..++++|+||+++++++ .++.|.|+|.++.+.++.+... ...+..|..++....+++.-. .+.|.+.|...
T Consensus 80 ~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d 159 (369)
T PF02239_consen 80 PRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSD 159 (369)
T ss_dssp EEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTT
T ss_pred cceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecc
Confidence 67899999999999876 5899999999999999887642 356888988998886666555 47888888876
Q ss_pred CCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCCe------eEEEEecCCCE--------
Q 003840 586 PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGT------AQMRFQPHLGR-------- 651 (792)
Q Consensus 586 ~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~------~~v~~sp~~~~-------- 651 (792)
...................|.|++++++++...+..|-++|..+++.+..+..+. ..--.+|..+.
T Consensus 160 ~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~ 239 (369)
T PF02239_consen 160 PKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLG 239 (369)
T ss_dssp SSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSS
T ss_pred ccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeecccc
Confidence 5444444444566788999999999888878888899999999998876653211 00112333222
Q ss_pred --EEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEE---eCC--eEEEEECCCCCCcceEEEeec-CC
Q 003840 652 --YLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASV---SED--SVRVWTVGSGSEGECVHELSC-NG 723 (792)
Q Consensus 652 --lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~---s~d--~I~IwDl~s~~~~~~i~~~~~-~~ 723 (792)
.+.....+.+.+||..+.+.+.++...... .-+..+|+++++++. +.+ .|.++|.++. +.+..+.. ..
T Consensus 240 ~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl---~~~~~i~~~~~ 315 (369)
T PF02239_consen 240 YFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTL---KVVKTITPGPG 315 (369)
T ss_dssp SSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGT---EEEE-HHHHHT
T ss_pred ceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCc---ceeEEEeccCC
Confidence 223333455667888899999999876666 678889999999998 444 8999999876 55555542 23
Q ss_pred CceEEEEEeCCCCEEEEEEcCC--eEEEEECCCCcEEEE
Q 003840 724 NKFHSCVFHPTYPSLLVIGCYQ--SLELWNMSENKTMTL 760 (792)
Q Consensus 724 ~~i~si~fspdg~~L~sgs~dg--~I~IwDl~~~~~~~~ 760 (792)
..+..+.|+++|++++++..++ .|.|||..+.+.+..
T Consensus 316 ~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~ 354 (369)
T PF02239_consen 316 KRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKR 354 (369)
T ss_dssp --EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEE
T ss_pred CcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEE
Confidence 3589999999999888776653 699999999998743
No 218
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.58 E-value=1.9e-14 Score=154.46 Aligned_cols=204 Identities=16% Similarity=0.210 Sum_probs=163.2
Q ss_pred CEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEE
Q 003840 525 KLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLD 604 (792)
Q Consensus 525 ~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~ 604 (792)
..|+.++.||.+.|.+ +.++....+..|.+.|.|-.|+|||.-|+++++||.|++|.-. +....++.-....|.|++
T Consensus 76 d~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrs--GMLRStl~Q~~~~v~c~~ 152 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRS--GMLRSTVVQNEESIRCAR 152 (737)
T ss_pred ceEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEecc--chHHHHHhhcCceeEEEE
Confidence 3678888999998876 5678888899999999999999999999999999999999875 344444555678899999
Q ss_pred EcCCCCeEEEEEeCCCcEEEEEcCCCeeEEE---eeCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCC
Q 003840 605 FHPNKDDLICSCDGDGEIRYWSINNGSCTRV---FKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKP 681 (792)
Q Consensus 605 fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~---~~~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~ 681 (792)
|.|+.+.++++.+ +.+.|=.+.....+-. +.+-+.++.|++..+.+++|+.|-..+|||.. |..++.-..|+.+
T Consensus 153 W~p~S~~vl~c~g--~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ 229 (737)
T KOG1524|consen 153 WAPNSNSIVFCQG--GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEYA 229 (737)
T ss_pred ECCCCCceEEecC--CeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc-CcccccCChhccc
Confidence 9999988887664 4455544443333322 34557889999999999999999999999975 5667777789999
Q ss_pred eEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEE
Q 003840 682 IDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLEL 749 (792)
Q Consensus 682 V~sv~~spdg~~Las~s~d~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~I 749 (792)
|++++|.|+ +.++.++.+++++=.. ..+.|..++|++||.-+++|+..|.+.+
T Consensus 230 ITSva~npd-~~~~v~S~nt~R~~~p--------------~~GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 230 ITSVAFNPE-KDYLLWSYNTARFSSP--------------RVGSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred eeeeeeccc-cceeeeeeeeeeecCC--------------CccceEEEEEcCCCceeeccccCceEEE
Confidence 999999999 7777777776663222 3457889999999999999999886554
No 219
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.58 E-value=2.1e-13 Score=139.11 Aligned_cols=226 Identities=16% Similarity=0.295 Sum_probs=176.8
Q ss_pred eccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCC--ceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEc
Q 003840 550 LEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG--YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSI 627 (792)
Q Consensus 550 l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~--~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl 627 (792)
+..-..+|+|.+|++|+..+|++.....|.||...... +...++..|...|++|+|.|..++++ +|+.|..-++|..
T Consensus 6 ~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIv-tcs~drnayVw~~ 84 (361)
T KOG1523|consen 6 FHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIV-TCSHDRNAYVWTQ 84 (361)
T ss_pred eeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCcee-EccCCCCcccccc
Confidence 33345789999999999999999999999999987644 56788999999999999999987655 9999999999999
Q ss_pred C-CCe-----eEEEeeCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEE----EEecCCCCCeEEEEEcCCCCEEEEE
Q 003840 628 N-NGS-----CTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACR----LSLQGHTKPIDSVCWDPSGELLASV 697 (792)
Q Consensus 628 ~-~~~-----~~~~~~~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~----~~l~~h~~~V~sv~~spdg~~Las~ 697 (792)
. .++ .+..++....++.|+|.+++|++++.-..|.||-.+...-- ..-+.+.+.|++++|+|++-+|++|
T Consensus 85 ~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaG 164 (361)
T KOG1523|consen 85 PSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAG 164 (361)
T ss_pred CCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceeccc
Confidence 4 443 34456778899999999999999999999999887754322 2233466789999999999999999
Q ss_pred eCC-eEEEEEC-----CCCC----------CcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCc--EEE
Q 003840 698 SED-SVRVWTV-----GSGS----------EGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK--TMT 759 (792)
Q Consensus 698 s~d-~I~IwDl-----~s~~----------~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~--~~~ 759 (792)
+.| .++||.. +... ....+.++....+.+..+.|+|+|..|+..+.|..|.+-|..... ...
T Consensus 165 s~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~ 244 (361)
T KOG1523|consen 165 STDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQS 244 (361)
T ss_pred ccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccc
Confidence 999 8888864 2110 012233444567789999999999999999999999999988775 223
Q ss_pred EcccCCCeEEEEEeCCC
Q 003840 760 LTAHEGLIAALAVSTET 776 (792)
Q Consensus 760 ~~~h~~~V~sl~fspdg 776 (792)
+....-+..++.|-.+.
T Consensus 245 ~~~~~lP~ls~~~ise~ 261 (361)
T KOG1523|consen 245 VATAQLPLLSVSWISEN 261 (361)
T ss_pred hhhccCCceeeEeecCC
Confidence 33333566677765443
No 220
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.58 E-value=1.6e-13 Score=147.84 Aligned_cols=167 Identities=15% Similarity=0.246 Sum_probs=131.6
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCceeEEec----cCCCCEEEEEECCCC-CeEEEEeCCCcEEEEeCCCCC---------
Q 003840 522 SDGKLLATGGHDKKAVLWHTDTLKSKTNLE----EHSSLITDVRFSPSM-PRLATSSFDKTVRVWDADNPG--------- 587 (792)
Q Consensus 522 pdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~----~h~~~V~~i~fspdg-~~Lasgs~Dg~V~IWdl~s~~--------- 587 (792)
+++--|+.|-..|.|.++|....+..+.+. -....|+||.|-|.+ ..|+++-.+|.+++||.+...
T Consensus 183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~ 262 (636)
T KOG2394|consen 183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQA 262 (636)
T ss_pred CCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccc
Confidence 456677888888899988876533222221 134789999999954 477788889999999875210
Q ss_pred ------------------ceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEE---EeeCCeeEEEEe
Q 003840 588 ------------------YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR---VFKGGTAQMRFQ 646 (792)
Q Consensus 588 ------------------~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~---~~~~~~~~v~~s 646 (792)
.++..+....+.|..++|+|||. ++|+.+.||.+||||..+.+++. .+.++..|++|+
T Consensus 263 ~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~-~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWS 341 (636)
T KOG2394|consen 263 LKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGK-YLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWS 341 (636)
T ss_pred cCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCc-eEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEc
Confidence 11222223346789999999876 55688999999999999877654 456889999999
Q ss_pred cCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcC
Q 003840 647 PHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDP 689 (792)
Q Consensus 647 p~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~sp 689 (792)
||+++|++|++|..|.||.+..++++..-.+|+.+|..|+|+|
T Consensus 342 PDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 342 PDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred CCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence 9999999999999999999999999999999999999999997
No 221
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.58 E-value=1.4e-13 Score=143.73 Aligned_cols=260 Identities=13% Similarity=0.205 Sum_probs=196.5
Q ss_pred cCCCCeEEEEEcCCCC--EEEEEeCCCeEEEEECCCCceeEEe------ccCCCCEEEEEECCCCCeEEEEeCCCcEEEE
Q 003840 510 ASTSKVICCHFSSDGK--LLATGGHDKKAVLWHTDTLKSKTNL------EEHSSLITDVRFSPSMPRLATSSFDKTVRVW 581 (792)
Q Consensus 510 ~H~~~V~~lafspdg~--~Lasgs~Dg~I~vWdl~t~~~~~~l------~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IW 581 (792)
.-...|..++|..|++ .|...+.|..+..+++....+...+ ......|..++.. ...|++|-.+|.+.+|
T Consensus 53 ~~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~ 130 (412)
T KOG3881|consen 53 DELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVSSGNLQVR 130 (412)
T ss_pred chhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc--CCEEEEEecCCcEEEE
Confidence 3455688888887665 4444546777777777666554443 3345566666554 3378889999999999
Q ss_pred eCCCCC---ceeEEecccCCCeEEEEEcCCCCeEEEEEeCC--CcEEEEEcCCCeeEEEeeC------------CeeEEE
Q 003840 582 DADNPG---YSLRTFMGHSASVMSLDFHPNKDDLICSCDGD--GEIRYWSINNGSCTRVFKG------------GTAQMR 644 (792)
Q Consensus 582 dl~s~~---~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~D--g~I~iwdl~~~~~~~~~~~------------~~~~v~ 644 (792)
....+. ..+..+..+ ..+..+.-++...+++++|+.. ..+.|||++..+.+..-+. -...+.
T Consensus 131 ~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~ 209 (412)
T KOG3881|consen 131 HDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIR 209 (412)
T ss_pred eccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccce
Confidence 998432 223333323 5577788888888999999999 8999999998865544322 234577
Q ss_pred EecC--CCEEEEEEcCCeEEEEECCCC-eEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEE-Ee
Q 003840 645 FQPH--LGRYLAAAAENVVSILDAETQ-ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVH-EL 719 (792)
Q Consensus 645 ~sp~--~~~lla~s~dg~I~i~D~~t~-~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~-~~ 719 (792)
|.+. ...|++++.-+.|++||.+.+ +++..|.-.+.+|+++...|++++|+++... .+..||++.+ +... .+
T Consensus 210 Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~---kl~g~~~ 286 (412)
T KOG3881|consen 210 FLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGG---KLLGCGL 286 (412)
T ss_pred ecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCc---eeecccc
Confidence 8877 788999999999999999986 6788888888999999999999999999887 9999999877 3333 36
Q ss_pred ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEeCC
Q 003840 720 SCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTE 775 (792)
Q Consensus 720 ~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~~~~~h~~~V~sl~fspd 775 (792)
.+..+.|+++..+|..++|++++-|..|+|+|+.+.+.+.-..-...+++|.+.++
T Consensus 287 kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs~lt~il~~~~ 342 (412)
T KOG3881|consen 287 KGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKSRLTFILLRDD 342 (412)
T ss_pred CCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhhccccEEEecCC
Confidence 77788999999999999999999999999999999776644444555677776543
No 222
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.58 E-value=1.6e-13 Score=144.74 Aligned_cols=190 Identities=19% Similarity=0.238 Sum_probs=143.9
Q ss_pred EEEEcCCCCeEEEEEeCCCcEEEEEcCCCe-e--------EE--EeeCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCe
Q 003840 602 SLDFHPNKDDLICSCDGDGEIRYWSINNGS-C--------TR--VFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQA 670 (792)
Q Consensus 602 sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~-~--------~~--~~~~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~ 670 (792)
....+|.++..+.....++...-|..-... + .. ...+...+++|+.++..+.+++.||+++||+.....
T Consensus 98 ~~~~h~~~~~~~~k~~~~~~~~~~e~~~~~d~~~~~~a~v~~~l~~~g~~k~vaf~~~gs~latgg~dg~lRv~~~Ps~~ 177 (398)
T KOG0771|consen 98 RESVHPNGNGRARKLPSGCECFHFEFVASSDFNAETAANVYQKLVDFGQQKVVAFNGDGSKLATGGTDGTLRVWEWPSML 177 (398)
T ss_pred hhhccccCCeeeeecCCcccccccccccccccchhhhhhHhHHHhhcCcceEEEEcCCCCEeeeccccceEEEEecCcch
Confidence 344556655555555555544444432221 0 00 112334779999999999999999999999988888
Q ss_pred EEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCc-----------------------ceEEEe--------
Q 003840 671 CRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEG-----------------------ECVHEL-------- 719 (792)
Q Consensus 671 ~~~~l~~h~~~V~sv~~spdg~~Las~s~d~I~IwDl~s~~~~-----------------------~~i~~~-------- 719 (792)
.+.....|...|.++.|+|||++|++.+.|..+||+++++... ..++..
T Consensus 178 t~l~e~~~~~eV~DL~FS~dgk~lasig~d~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~ 257 (398)
T KOG0771|consen 178 TILEEIAHHAEVKDLDFSPDGKFLASIGADSARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGG 257 (398)
T ss_pred hhhhhHhhcCccccceeCCCCcEEEEecCCceEEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCc
Confidence 8888888999999999999999999999999999999877100 000000
Q ss_pred --------------------ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE--EEcccCCCeEEEEEeCCCC
Q 003840 720 --------------------SCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM--TLTAHEGLIAALAVSTETG 777 (792)
Q Consensus 720 --------------------~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~--~~~~h~~~V~sl~fspdg~ 777 (792)
......|.+++++++|++++.|+.||.|-||+..+.+.+ ....|...|+.+.|+||.+
T Consensus 258 v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr 337 (398)
T KOG0771|consen 258 VRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSR 337 (398)
T ss_pred eeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcC
Confidence 001236889999999999999999999999999998887 4457999999999999999
Q ss_pred EEEEEeCCCcEEEe
Q 003840 778 YVASASHDKFVKLW 791 (792)
Q Consensus 778 ~LaSgs~DG~I~IW 791 (792)
++++.+.|..+.|.
T Consensus 338 ~~~svSs~~~~~v~ 351 (398)
T KOG0771|consen 338 YLASVSSDNEAAVT 351 (398)
T ss_pred cccccccCCceeEE
Confidence 99998888777653
No 223
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.57 E-value=3e-13 Score=155.12 Aligned_cols=252 Identities=20% Similarity=0.307 Sum_probs=187.7
Q ss_pred CCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEeccc---CCCeEEEEEcC-C
Q 003840 533 DKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGH---SASVMSLDFHP-N 608 (792)
Q Consensus 533 Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h---~~~V~sl~fsp-d 608 (792)
+..|..||.... .+....-..+.|+|-...++++...-.|+|||.+. +..+..|..+ ...|+.+++.. +
T Consensus 1049 t~~i~~W~~~~~------~~n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~-~~~l~~F~n~~~~~t~Vs~l~liNe~ 1121 (1387)
T KOG1517|consen 1049 TNPIGNWDQKFM------TGNNQPPKTLKFHPFEPQIAAADDRERIRVWDWEK-GRLLNGFDNGAFPDTRVSDLELINEQ 1121 (1387)
T ss_pred cccccchHHHHH------hcCCCCCceeeecCCCceeEEcCCcceEEEEeccc-CceeccccCCCCCCCccceeeeeccc
Confidence 344677875321 11222456678888888999999888999999987 5666666543 45688888753 4
Q ss_pred CCeEEEEEeCCCcEEEEEcCC-----CeeEEEee----------CCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEE
Q 003840 609 KDDLICSCDGDGEIRYWSINN-----GSCTRVFK----------GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRL 673 (792)
Q Consensus 609 ~~~ll~sgs~Dg~I~iwdl~~-----~~~~~~~~----------~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~ 673 (792)
+..++++|+.||.||||+--. .+.+..+. +....+.|.-..+++++++.-..|+|||.....++.
T Consensus 1122 D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~ 1201 (1387)
T KOG1517|consen 1122 DDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVA 1201 (1387)
T ss_pred chhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEe
Confidence 556788999999999997432 23333221 122346788888999999999999999999988777
Q ss_pred EecC-CCCCeEEEEEcC-CCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCc--eEEEEEeCCCC-EEEEEEcCCeE
Q 003840 674 SLQG-HTKPIDSVCWDP-SGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNK--FHSCVFHPTYP-SLLVIGCYQSL 747 (792)
Q Consensus 674 ~l~~-h~~~V~sv~~sp-dg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~--i~si~fspdg~-~L~sgs~dg~I 747 (792)
.+.. ....|+++.-+- .|+.|++|..| .|++||.+.......+.....|... |..+.+.+.|- .|++|+.+|.|
T Consensus 1202 diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I 1281 (1387)
T KOG1517|consen 1202 DIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDI 1281 (1387)
T ss_pred ecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeE
Confidence 6654 445577765443 46899999988 9999999987665667777777776 99999998664 59999999999
Q ss_pred EEEECCCCcEE---EEcccC--C-CeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003840 748 ELWNMSENKTM---TLTAHE--G-LIAALAVSTETGYVASASHDKFVKLWK 792 (792)
Q Consensus 748 ~IwDl~~~~~~---~~~~h~--~-~V~sl~fspdg~~LaSgs~DG~I~IWd 792 (792)
++||++..... ....|. + .++++..+++..+||+|+. +.|+||+
T Consensus 1282 ~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~ 1331 (1387)
T KOG1517|consen 1282 QLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYS 1331 (1387)
T ss_pred EEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEe
Confidence 99999884322 333443 3 5999999999999999988 9999996
No 224
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.57 E-value=8.8e-13 Score=149.49 Aligned_cols=233 Identities=18% Similarity=0.158 Sum_probs=158.4
Q ss_pred CeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCC---CcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCC
Q 003840 534 KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD---KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKD 610 (792)
Q Consensus 534 g~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~D---g~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~ 610 (792)
..|.+||.+ +.....+..+...+.+.+|+|||+.|+..+.+ ..|++||+.+ +.. ..+....+.+.+..|+||++
T Consensus 176 ~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~-g~~-~~l~~~~g~~~~~~~SPDG~ 252 (427)
T PRK02889 176 YQLQISDAD-GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLAT-GRR-RVVANFKGSNSAPAWSPDGR 252 (427)
T ss_pred cEEEEECCC-CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCC-CCE-EEeecCCCCccceEECCCCC
Confidence 467777764 45555666778889999999999999887653 3599999986 332 23333445667899999999
Q ss_pred eEEEEEeCCCcEEEEE--cCCCeeEEEee--CCeeEEEEecCCCEEEEEEc-CCe--EEEEECCCCeEEEEecCCCCCeE
Q 003840 611 DLICSCDGDGEIRYWS--INNGSCTRVFK--GGTAQMRFQPHLGRYLAAAA-ENV--VSILDAETQACRLSLQGHTKPID 683 (792)
Q Consensus 611 ~ll~sgs~Dg~I~iwd--l~~~~~~~~~~--~~~~~v~~sp~~~~lla~s~-dg~--I~i~D~~t~~~~~~l~~h~~~V~ 683 (792)
.++++.+.+|...||. +..+....... .......|+|++.+++.++. ++. |+++|+.++...... .+.....
T Consensus 253 ~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt-~~g~~~~ 331 (427)
T PRK02889 253 TLAVALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVT-FTGSYNT 331 (427)
T ss_pred EEEEEEccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEe-cCCCCcC
Confidence 8888888888766665 44444332222 23456789999999887765 344 445555555433222 2223345
Q ss_pred EEEEcCCCCEEEEEeCC----eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCC---eEEEEECCCCc
Q 003840 684 SVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ---SLELWNMSENK 756 (792)
Q Consensus 684 sv~~spdg~~Las~s~d----~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg---~I~IwDl~~~~ 756 (792)
..+|+|||++|+..+.+ .|++||+.++.. ..+.. ......+.|+||+++|+.++.++ .+++.++....
T Consensus 332 ~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~----~~lt~-~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~g~~ 406 (427)
T PRK02889 332 SPRISPDGKLLAYISRVGGAFKLYVQDLATGQV----TALTD-TTRDESPSFAPNGRYILYATQQGGRSVLAAVSSDGRI 406 (427)
T ss_pred ceEECCCCCEEEEEEccCCcEEEEEEECCCCCe----EEccC-CCCccCceECCCCCEEEEEEecCCCEEEEEEECCCCc
Confidence 68899999999876643 599999987632 12222 22346789999999999888664 57777886544
Q ss_pred EEEEcccCCCeEEEEEeCC
Q 003840 757 TMTLTAHEGLIAALAVSTE 775 (792)
Q Consensus 757 ~~~~~~h~~~V~sl~fspd 775 (792)
...+..+.+.+...+|+|-
T Consensus 407 ~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 407 KQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred eEEeecCCCCCCCCccCCC
Confidence 4456667788888899873
No 225
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.55 E-value=3.1e-11 Score=133.01 Aligned_cols=266 Identities=16% Similarity=0.168 Sum_probs=180.7
Q ss_pred EEEEeCC----CeEEEEEC--CCCceeEEe-ccCCCCEEEEEECCCCCeEEEEeC----CCcEEEEeCCCC-Cc--eeEE
Q 003840 527 LATGGHD----KKAVLWHT--DTLKSKTNL-EEHSSLITDVRFSPSMPRLATSSF----DKTVRVWDADNP-GY--SLRT 592 (792)
Q Consensus 527 Lasgs~D----g~I~vWdl--~t~~~~~~l-~~h~~~V~~i~fspdg~~Lasgs~----Dg~V~IWdl~s~-~~--~i~~ 592 (792)
+++|+++ +.|++|++ ++++....- .........++++|++++|+++.. ++.|..|++... +. .+..
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~ 81 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNS 81 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeee
Confidence 4566666 68999888 444432221 124455677899999999999877 578999999874 22 2233
Q ss_pred ecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCC-CeeEEE---e-------------eCCeeEEEEecCCCEEEEE
Q 003840 593 FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN-GSCTRV---F-------------KGGTAQMRFQPHLGRYLAA 655 (792)
Q Consensus 593 ~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~-~~~~~~---~-------------~~~~~~v~~sp~~~~lla~ 655 (792)
..........|+++|+++.++++...+|.|.+|++.. +..... + ..+..++.++|++++++++
T Consensus 82 ~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~ 161 (345)
T PF10282_consen 82 VPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVP 161 (345)
T ss_dssp EEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEE
T ss_pred eccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEE
Confidence 3334455678999999999888888899999999987 443322 1 1245679999999999887
Q ss_pred Ec-CCeEEEEECCCCe--E--EEEec-CCCCCeEEEEEcCCCCEEEEEeCC--eEEEEECCCC-CCcceEEEeecC----
Q 003840 656 AA-ENVVSILDAETQA--C--RLSLQ-GHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSG-SEGECVHELSCN---- 722 (792)
Q Consensus 656 s~-dg~I~i~D~~t~~--~--~~~l~-~h~~~V~sv~~spdg~~Las~s~d--~I~IwDl~s~-~~~~~i~~~~~~---- 722 (792)
.. ...|.+|++.... . ...+. .....-+.++|+|+++++++..+. .|.+|++... .....+..+...
T Consensus 162 dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~ 241 (345)
T PF10282_consen 162 DLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGF 241 (345)
T ss_dssp ETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTS
T ss_pred ecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccc
Confidence 65 5689999987654 3 22222 234557889999999998887765 8999998722 122333333321
Q ss_pred --CCceEEEEEeCCCCEEEEEEcC-CeEEEEECC--CCcEE---EEcccCCCeEEEEEeCCCCEEEEEeC-CCcEEEeC
Q 003840 723 --GNKFHSCVFHPTYPSLLVIGCY-QSLELWNMS--ENKTM---TLTAHEGLIAALAVSTETGYVASASH-DKFVKLWK 792 (792)
Q Consensus 723 --~~~i~si~fspdg~~L~sgs~d-g~I~IwDl~--~~~~~---~~~~h~~~V~sl~fspdg~~LaSgs~-DG~I~IWd 792 (792)
......++++|||++|+++... +.|.+|+++ ++++. .+.......+.++|+|+|++|++++. ++.|.+|+
T Consensus 242 ~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~ 320 (345)
T PF10282_consen 242 TGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFD 320 (345)
T ss_dssp CSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEE
T ss_pred cccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEE
Confidence 1257889999999999988754 689999983 34443 22233455899999999999998875 67888874
No 226
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.55 E-value=2.6e-12 Score=138.16 Aligned_cols=271 Identities=16% Similarity=0.219 Sum_probs=193.2
Q ss_pred CCeEEEEEcCCCCEEEEEeCC---------------CeEEEEECCCCceeEEeccCCCC--EE-EEEECCCCCeEEEEeC
Q 003840 513 SKVICCHFSSDGKLLATGGHD---------------KKAVLWHTDTLKSKTNLEEHSSL--IT-DVRFSPSMPRLATSSF 574 (792)
Q Consensus 513 ~~V~~lafspdg~~Lasgs~D---------------g~I~vWdl~t~~~~~~l~~h~~~--V~-~i~fspdg~~Lasgs~ 574 (792)
..|..+.|+|.++||.+-+.. ..+.|||+.++..+..+..-... .+ -+.|+.+.+++|-. .
T Consensus 72 ~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v 150 (561)
T COG5354 72 PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-V 150 (561)
T ss_pred CCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-c
Confidence 348889999999999986543 35999999999999998876655 56 78899888876655 3
Q ss_pred CCcEEEEeCCCCCceeEEeccc-CCCeEEEEEcCCCCe-EEEE-----EeCCCcEEEEEcCCCeeEEE---eeCCeeEEE
Q 003840 575 DKTVRVWDADNPGYSLRTFMGH-SASVMSLDFHPNKDD-LICS-----CDGDGEIRYWSINNGSCTRV---FKGGTAQMR 644 (792)
Q Consensus 575 Dg~V~IWdl~s~~~~i~~~~~h-~~~V~sl~fspd~~~-ll~s-----gs~Dg~I~iwdl~~~~~~~~---~~~~~~~v~ 644 (792)
...++|+++ ++......+... ...|....|+|.+++ .||. .+.++.+++|.+..++.+.. ++.....+.
T Consensus 151 ~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLk 229 (561)
T COG5354 151 GSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLK 229 (561)
T ss_pred cCeEEEEec-CCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEE
Confidence 445999997 323222222211 356888889887432 2222 35578999999987766543 445666788
Q ss_pred EecCCCEEEEEEc-----------CCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEe--CC-eEEEEECCCC
Q 003840 645 FQPHLGRYLAAAA-----------ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVS--ED-SVRVWTVGSG 710 (792)
Q Consensus 645 ~sp~~~~lla~s~-----------dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s--~d-~I~IwDl~s~ 710 (792)
|.+.++++++-.. +..++|+++....+.... ...++|..++|.|.++.+++++ .. .+.++|++..
T Consensus 230 W~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~-~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N 308 (561)
T COG5354 230 WQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEK-DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN 308 (561)
T ss_pred EecCCceEEEEEEEeeecccceeccceEEEEeecccccceec-cccccceeeeecccCCceeEEecccccceeecccccc
Confidence 9999988766432 357888988855544443 5678999999999998777766 34 8999999753
Q ss_pred CCcceEEEeecCCCceEEEEEeCCCCEEEEEEcC---CeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEe----
Q 003840 711 SEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY---QSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASAS---- 783 (792)
Q Consensus 711 ~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~d---g~I~IwDl~~~~~~~~~~h~~~V~sl~fspdg~~LaSgs---- 783 (792)
.. +......-..+.|+|.++++++++-+ |.|.+||......+.-.-......-+.|+||+.++.+..
T Consensus 309 ----l~--~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n~s~~~wspd~qF~~~~~ts~k 382 (561)
T COG5354 309 ----LR--FYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLNTSYCDWSPDGQFYDTDTTSEK 382 (561)
T ss_pred ----eE--EecCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCCceEeeccCCceEEEecCCCcc
Confidence 22 22334455678899999999998877 589999998776653222223345578999999887764
Q ss_pred --CCCcEEEeC
Q 003840 784 --HDKFVKLWK 792 (792)
Q Consensus 784 --~DG~I~IWd 792 (792)
.|..|+|||
T Consensus 383 ~~~Dn~i~l~~ 393 (561)
T COG5354 383 LRVDNSIKLWD 393 (561)
T ss_pred cccCcceEEEE
Confidence 378899996
No 227
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.55 E-value=4.1e-13 Score=137.85 Aligned_cols=275 Identities=18% Similarity=0.314 Sum_probs=187.9
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-----eeEEeccC------------CCCEEEEEECCCCC--eEEEE
Q 003840 512 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK-----SKTNLEEH------------SSLITDVRFSPSMP--RLATS 572 (792)
Q Consensus 512 ~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~-----~~~~l~~h------------~~~V~~i~fspdg~--~Lasg 572 (792)
.+-|.++.|..+|.+||+|..+|.|.+|.-+... ....+..| ...|..|.|.+++. .++..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 4568999999999999999999999999654322 22233233 35688999998655 68888
Q ss_pred eCCCcEEEEeCCCCCcee----------------------------------EEe-cccCCCeEEEEEcCCCCeEEEEEe
Q 003840 573 SFDKTVRVWDADNPGYSL----------------------------------RTF-MGHSASVMSLDFHPNKDDLICSCD 617 (792)
Q Consensus 573 s~Dg~V~IWdl~s~~~~i----------------------------------~~~-~~h~~~V~sl~fspd~~~ll~sgs 617 (792)
+.|++|++|.+...+... +.+ ..|...|.+|.++.|...++ ++
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~l-SA- 182 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFL-SA- 182 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEe-ec-
Confidence 899999999987532111 111 25778899999999987665 44
Q ss_pred CCCcEEEEEcCCCe-eEEEe--e--------CCeeEEEEecCCC-EEEEEEcCCeEEEEECCCCeEE----EEec-----
Q 003840 618 GDGEIRYWSINNGS-CTRVF--K--------GGTAQMRFQPHLG-RYLAAAAENVVSILDAETQACR----LSLQ----- 676 (792)
Q Consensus 618 ~Dg~I~iwdl~~~~-~~~~~--~--------~~~~~v~~sp~~~-~lla~s~dg~I~i~D~~t~~~~----~~l~----- 676 (792)
.|-.|.+|+++--. +.... + .-+++..|+|... .++..++.|.|++.|++...+. ..+.
T Consensus 183 DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp 262 (433)
T KOG1354|consen 183 DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDP 262 (433)
T ss_pred cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCC
Confidence 58899999987432 22222 1 2356677888764 4556677899999999853211 1111
Q ss_pred -------CCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEeecCC---------------CceEEEEEeCC
Q 003840 677 -------GHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNG---------------NKFHSCVFHPT 734 (792)
Q Consensus 677 -------~h~~~V~sv~~spdg~~Las~s~d~I~IwDl~s~~~~~~i~~~~~~~---------------~~i~si~fspd 734 (792)
+-...|..+.|+.+|+||++-..-+|+|||+.... +.+..+..|. ..-..|+|+.+
T Consensus 263 ~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~--~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~ 340 (433)
T KOG1354|consen 263 SSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEA--KPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGN 340 (433)
T ss_pred cchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccC--CcceEEeehHhHHHHHHHHhhccchhheeEEEEcCC
Confidence 11245788999999999998777799999997543 3333333332 11356889999
Q ss_pred CCEEEEEEcCCeEEEEECCCCcEE--EEc--------------------cc-------------CCCeEEEEEeCCCCEE
Q 003840 735 YPSLLVIGCYQSLELWNMSENKTM--TLT--------------------AH-------------EGLIAALAVSTETGYV 779 (792)
Q Consensus 735 g~~L~sgs~dg~I~IwDl~~~~~~--~~~--------------------~h-------------~~~V~sl~fspdg~~L 779 (792)
+.++++|+..+.+++|++..+... ++. +. ...|...+|+|..+.|
T Consensus 341 ~~~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~~~~~~~k~~~V~~~g~r~~~~~~vd~ldf~kkilh~aWhp~en~i 420 (433)
T KOG1354|consen 341 DSYVMTGSYNNVFRVFNLARGSKEDFTLEASRKNMKPRKVLKLRLVSSSGKRKRDEISVDALDFRKKILHTAWHPKENSI 420 (433)
T ss_pred cceEecccccceEEEecCCCCcceeecccccccCCcccccccceeeecCCCccccccccchhhhhhHHHhhccCCcccee
Confidence 999999999999999996554322 110 10 1123445799999888
Q ss_pred EEEeCCCcEEEe
Q 003840 780 ASASHDKFVKLW 791 (792)
Q Consensus 780 aSgs~DG~I~IW 791 (792)
|++..+ .++||
T Consensus 421 a~aatn-nlyif 431 (433)
T KOG1354|consen 421 AVAATN-NLYIF 431 (433)
T ss_pred eeeecC-ceEEe
Confidence 887654 46655
No 228
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.54 E-value=8.7e-13 Score=149.57 Aligned_cols=222 Identities=18% Similarity=0.228 Sum_probs=154.1
Q ss_pred eeeecCCCCeEEEEEcCCCCEEEEEeCC---CeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEE-EEeCCCcEEEE
Q 003840 506 NSVRASTSKVICCHFSSDGKLLATGGHD---KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLA-TSSFDKTVRVW 581 (792)
Q Consensus 506 ~~l~~H~~~V~~lafspdg~~Lasgs~D---g~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~La-sgs~Dg~V~IW 581 (792)
..+..+...|.+.+|+|||+.|+..+.+ ..|++||+.+++... +....+.+.+.+|+|||+.|+ +.+.+|...||
T Consensus 189 ~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy 267 (427)
T PRK02889 189 QSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIY 267 (427)
T ss_pred eEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceEE
Confidence 4455778889999999999999887753 359999999887543 333445677899999999876 46778887777
Q ss_pred eCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEc--CCCeeEEEe-eC-CeeEEEEecCCCEEEEEEc
Q 003840 582 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSI--NNGSCTRVF-KG-GTAQMRFQPHLGRYLAAAA 657 (792)
Q Consensus 582 dl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl--~~~~~~~~~-~~-~~~~v~~sp~~~~lla~s~ 657 (792)
.++..+.....+..+...+....|+|||+.+++++..+|...+|.+ ..+...... .+ ......|+|++++++.++.
T Consensus 268 ~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~ 347 (427)
T PRK02889 268 TVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISR 347 (427)
T ss_pred EEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEc
Confidence 6654344456666666667788999999988877666676666655 444433322 22 2345789999999988776
Q ss_pred CC---eEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC----eEEEEECCCCCCcceEEEeecCCCceEEEE
Q 003840 658 EN---VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHSCV 730 (792)
Q Consensus 658 dg---~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d----~I~IwDl~s~~~~~~i~~~~~~~~~i~si~ 730 (792)
++ .|++||+.+++...... . .....+.|+|||++|+.++.+ .+++.++. + .....+..+.+.+...+
T Consensus 348 ~~g~~~I~v~d~~~g~~~~lt~-~-~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~-g---~~~~~l~~~~g~~~~p~ 421 (427)
T PRK02889 348 VGGAFKLYVQDLATGQVTALTD-T-TRDESPSFAPNGRYILYATQQGGRSVLAAVSSD-G---RIKQRLSVQGGDVREPS 421 (427)
T ss_pred cCCcEEEEEEECCCCCeEEccC-C-CCccCceECCCCCEEEEEEecCCCEEEEEEECC-C---CceEEeecCCCCCCCCc
Confidence 54 69999998886554322 2 334678999999988887754 35566663 2 23334444455666677
Q ss_pred EeCC
Q 003840 731 FHPT 734 (792)
Q Consensus 731 fspd 734 (792)
|+|-
T Consensus 422 wsp~ 425 (427)
T PRK02889 422 WGPF 425 (427)
T ss_pred cCCC
Confidence 7763
No 229
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.52 E-value=2.6e-12 Score=146.10 Aligned_cols=221 Identities=18% Similarity=0.245 Sum_probs=154.9
Q ss_pred eeeeeecCCCCeEEEEEcCCCCEEEEEeCC---CeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEE-EEeCCC--c
Q 003840 504 EANSVRASTSKVICCHFSSDGKLLATGGHD---KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLA-TSSFDK--T 577 (792)
Q Consensus 504 ~~~~l~~H~~~V~~lafspdg~~Lasgs~D---g~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~La-sgs~Dg--~ 577 (792)
..+.+..|...|.+.+|+|||+.|+.++.+ ..|++||+.+++... +..+.+...+++|+|||+.|+ +.+.+| .
T Consensus 195 ~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~ 273 (433)
T PRK04922 195 NPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRLALTLSRDGNPE 273 (433)
T ss_pred CceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEEEEEEeCCCCce
Confidence 345566778889999999999999988743 469999998876543 334445566889999999775 445555 5
Q ss_pred EEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCc--EEEEEcCCCeeEEEee-C-CeeEEEEecCCCEEE
Q 003840 578 VRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGE--IRYWSINNGSCTRVFK-G-GTAQMRFQPHLGRYL 653 (792)
Q Consensus 578 V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~--I~iwdl~~~~~~~~~~-~-~~~~v~~sp~~~~ll 653 (792)
|++||+.+ +. +..+..+......++|+||+..++++...+|. |+++|+.+++..+... + ......|+|++++++
T Consensus 274 Iy~~d~~~-g~-~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~Ia 351 (433)
T PRK04922 274 IYVMDLGS-RQ-LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKKIA 351 (433)
T ss_pred EEEEECCC-CC-eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEE
Confidence 99999986 33 45555666666789999999988877766665 6777777766544332 2 234589999999998
Q ss_pred EEEcCC---eEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC----eEEEEECCCCCCcceEEEeecCCCce
Q 003840 654 AAAAEN---VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKF 726 (792)
Q Consensus 654 a~s~dg---~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d----~I~IwDl~s~~~~~~i~~~~~~~~~i 726 (792)
..+.++ .|.+||+.+++.. .+. +........|+|||++|+..+.+ .|+++++.. .....+..+...+
T Consensus 352 ~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g----~~~~~l~~~~g~~ 425 (433)
T PRK04922 352 MVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDG----RVRQRLVSADGEV 425 (433)
T ss_pred EEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCC----CceEEcccCCCCC
Confidence 876543 6999999888765 333 22345567999999988776653 578888743 2333444444556
Q ss_pred EEEEEeC
Q 003840 727 HSCVFHP 733 (792)
Q Consensus 727 ~si~fsp 733 (792)
...+|+|
T Consensus 426 ~~p~wsp 432 (433)
T PRK04922 426 REPAWSP 432 (433)
T ss_pred CCCccCC
Confidence 6667765
No 230
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.52 E-value=1e-12 Score=153.24 Aligned_cols=249 Identities=19% Similarity=0.266 Sum_probs=173.5
Q ss_pred EECCCCceeEEeccCCCCEEEEEECCCC-CeEEEEeCCCcEEEEeCCCCC------ceeEEecccCCCeEEEEEcCCCCe
Q 003840 539 WHTDTLKSKTNLEEHSSLITDVRFSPSM-PRLATSSFDKTVRVWDADNPG------YSLRTFMGHSASVMSLDFHPNKDD 611 (792)
Q Consensus 539 Wdl~t~~~~~~l~~h~~~V~~i~fspdg-~~Lasgs~Dg~V~IWdl~s~~------~~i~~~~~h~~~V~sl~fspd~~~ 611 (792)
|+. .|..+..+..|...|..++.++.. .+|++|+.||+|+|||+.+-. ....++......+.++.+.+.++.
T Consensus 1034 W~p-~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~ 1112 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQ 1112 (1431)
T ss_pred CCc-cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCe
Confidence 554 467888889999999999998755 899999999999999997521 122344446778999999988765
Q ss_pred EEEEEeCCCcEEEEEcCCCee-------EEEee----CCeeE-EEEecC-CC-EEEEEEcCCeEEEEECCCCeEEEEecC
Q 003840 612 LICSCDGDGEIRYWSINNGSC-------TRVFK----GGTAQ-MRFQPH-LG-RYLAAAAENVVSILDAETQACRLSLQG 677 (792)
Q Consensus 612 ll~sgs~Dg~I~iwdl~~~~~-------~~~~~----~~~~~-v~~sp~-~~-~lla~s~dg~I~i~D~~t~~~~~~l~~ 677 (792)
++ .++.||.|++.+++..+. .+..+ +.+.. .+|... .. .++++...+.|..||+++.....+++.
T Consensus 1113 ~A-v~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~ 1191 (1431)
T KOG1240|consen 1113 FA-VSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKN 1191 (1431)
T ss_pred EE-EEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhc
Confidence 54 669999999999976321 11111 11222 122222 23 577778889999999998876665543
Q ss_pred --CCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEee-cCCCceEEEEEeCCCC---EEEEEE--cCCeEE
Q 003840 678 --HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELS-CNGNKFHSCVFHPTYP---SLLVIG--CYQSLE 748 (792)
Q Consensus 678 --h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~-~~~~~i~si~fspdg~---~L~sgs--~dg~I~ 748 (792)
..+.|++++.+|.+.+++.|+.. .+.+||++-+ ..+..+. .+..++..+..+|-.+ .+++++ ..+.|.
T Consensus 1192 ~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~---~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs 1268 (1431)
T KOG1240|consen 1192 QLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFR---VPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVS 1268 (1431)
T ss_pred CccccceeEEEecCCceEEEEecCCceEEEEEeecC---ceeecccCcccCCcceEEeeccCCCCceEEEecccCCCcee
Confidence 45779999999999999999988 9999999865 4444333 2345677777766443 455444 457999
Q ss_pred EEECCCCcEE-EEccc-------------------CCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003840 749 LWNMSENKTM-TLTAH-------------------EGLIAALAVSTETGYVASASHDKFVKLWK 792 (792)
Q Consensus 749 IwDl~~~~~~-~~~~h-------------------~~~V~sl~fspdg~~LaSgs~DG~I~IWd 792 (792)
+|++.++.+. .+... .-.....++...+.++++|+.|..|+.||
T Consensus 1269 ~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD 1332 (1431)
T KOG1240|consen 1269 TWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWD 1332 (1431)
T ss_pred eeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeecc
Confidence 9999988644 22111 11122334444566899999999999998
No 231
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.51 E-value=5.1e-12 Score=129.07 Aligned_cols=229 Identities=13% Similarity=0.212 Sum_probs=165.1
Q ss_pred CEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcee-EEecccCCCeEEEEEcCCCCeEEEEEeCC------CcEEEEEcC
Q 003840 556 LITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSL-RTFMGHSASVMSLDFHPNKDDLICSCDGD------GEIRYWSIN 628 (792)
Q Consensus 556 ~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i-~~~~~h~~~V~sl~fspd~~~ll~sgs~D------g~I~iwdl~ 628 (792)
...+++|+-|...+++|..+| .+||+++--++.. +.+....-.+..+-|- .+.+.++|+.+ ..|.|||-.
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR--~N~laLVGGg~~pky~pNkviIWDD~ 83 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFR--SNYLALVGGGSRPKYPPNKVIIWDDL 83 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhh--hceEEEecCCCCCCCCCceEEEEecc
Confidence 345699999999999999888 9999997522211 1111111223333343 24555566554 579999977
Q ss_pred CCeeEEE--eeCCeeEEEEecCCCEEEEEEcCCeEEEEECC-CCeEEEEecC--CCCCeEEEEEcCCCCEEEEEeCC--e
Q 003840 629 NGSCTRV--FKGGTAQMRFQPHLGRYLAAAAENVVSILDAE-TQACRLSLQG--HTKPIDSVCWDPSGELLASVSED--S 701 (792)
Q Consensus 629 ~~~~~~~--~~~~~~~v~~sp~~~~lla~s~dg~I~i~D~~-t~~~~~~l~~--h~~~V~sv~~spdg~~Las~s~d--~ 701 (792)
..+++.. |..++..+++.++ .+++..++.|+||... +.+.++.+.. ....+.+++-.-+..+||.-+.. .
T Consensus 84 k~~~i~el~f~~~I~~V~l~r~---riVvvl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~Gq 160 (346)
T KOG2111|consen 84 KERCIIELSFNSEIKAVKLRRD---RIVVVLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQ 160 (346)
T ss_pred cCcEEEEEEeccceeeEEEcCC---eEEEEecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccce
Confidence 7777765 4567888888765 4555667899999987 4455555543 23345555544455677776665 8
Q ss_pred EEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCC-eEEEEECCCCcEE-EEc--ccCCCeEEEEEeCCCC
Q 003840 702 VRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ-SLELWNMSENKTM-TLT--AHEGLIAALAVSTETG 777 (792)
Q Consensus 702 I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg-~I~IwDl~~~~~~-~~~--~h~~~V~sl~fspdg~ 777 (792)
|.|-|+..... ..-..+..|...|.+++++-+|..||+++..| -|+|||..+++.+ .+. .....|.+|+|+|++.
T Consensus 161 vQi~dL~~~~~-~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s 239 (346)
T KOG2111|consen 161 VQIVDLASTKP-NAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSS 239 (346)
T ss_pred EEEEEhhhcCc-CCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCcc
Confidence 99999976432 13467788999999999999999999999999 5899999999988 333 2346799999999999
Q ss_pred EEEEEeCCCcEEEe
Q 003840 778 YVASASHDKFVKLW 791 (792)
Q Consensus 778 ~LaSgs~DG~I~IW 791 (792)
+||++|+.|+|+||
T Consensus 240 ~LavsSdKgTlHiF 253 (346)
T KOG2111|consen 240 WLAVSSDKGTLHIF 253 (346)
T ss_pred EEEEEcCCCeEEEE
Confidence 99999999999997
No 232
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.51 E-value=1.2e-13 Score=148.68 Aligned_cols=214 Identities=19% Similarity=0.282 Sum_probs=156.1
Q ss_pred ceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCC-CCeEEEEEeCCCcEE
Q 003840 545 KSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPN-KDDLICSCDGDGEIR 623 (792)
Q Consensus 545 ~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd-~~~ll~sgs~Dg~I~ 623 (792)
.....+.+|.+.|+|+.|+.+|.+|++|+.|-.+.|||.-..+.....-++|...|.++.|-|. ++.++++|..|..|+
T Consensus 41 ~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~ 120 (758)
T KOG1310|consen 41 DLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIK 120 (758)
T ss_pred chhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEE
Confidence 3456788999999999999999999999999999999998644444556799999999999885 567888999999999
Q ss_pred EEEcCCCe----------eEEEee---CCeeEEEEecCC-CEEEEEEcCCeEEEEECCCCeEEE----------EecCCC
Q 003840 624 YWSINNGS----------CTRVFK---GGTAQMRFQPHL-GRYLAAAAENVVSILDAETQACRL----------SLQGHT 679 (792)
Q Consensus 624 iwdl~~~~----------~~~~~~---~~~~~v~~sp~~-~~lla~s~dg~I~i~D~~t~~~~~----------~l~~h~ 679 (792)
+||+...+ .++.+. ..+..++..|++ ..+.+++.||+|+-||++...... .+...-
T Consensus 121 lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~l 200 (758)
T KOG1310|consen 121 LFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQL 200 (758)
T ss_pred EEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhh
Confidence 99998522 111222 234557777887 678899999999999998742111 011112
Q ss_pred CCeEEEEEcCCC-CEEEEEeCC-eEEEEECCCCC---------------CcceEEEeec-C--------CC---ceEEEE
Q 003840 680 KPIDSVCWDPSG-ELLASVSED-SVRVWTVGSGS---------------EGECVHELSC-N--------GN---KFHSCV 730 (792)
Q Consensus 680 ~~V~sv~~spdg-~~Las~s~d-~I~IwDl~s~~---------------~~~~i~~~~~-~--------~~---~i~si~ 730 (792)
-...|+.++|.. .+|++|+.| ..++||.+... ...|+..+.. | .. .++.+.
T Consensus 201 ielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vt 280 (758)
T KOG1310|consen 201 IELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVT 280 (758)
T ss_pred heeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEE
Confidence 346789999954 588889999 99999953210 0112322211 1 11 146678
Q ss_pred EeCCCCEEEEEEcCCeEEEEECCCCcEE
Q 003840 731 FHPTYPSLLVIGCYQSLELWNMSENKTM 758 (792)
Q Consensus 731 fspdg~~L~sgs~dg~I~IwDl~~~~~~ 758 (792)
|+|+|..|++.-....|++||+..++..
T Consensus 281 fnpNGtElLvs~~gEhVYlfdvn~~~~~ 308 (758)
T KOG1310|consen 281 FNPNGTELLVSWGGEHVYLFDVNEDKSP 308 (758)
T ss_pred ECCCCcEEEEeeCCeEEEEEeecCCCCc
Confidence 9999998888877779999999887644
No 233
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.51 E-value=8.2e-12 Score=135.23 Aligned_cols=267 Identities=14% Similarity=0.197 Sum_probs=180.9
Q ss_pred CeEEEEEcCCCCEEEEEeC-----------CCeEEEEECCCCceeEEecc--CCCCE-EEEEECCCCCeEEEEeCCCcEE
Q 003840 514 KVICCHFSSDGKLLATGGH-----------DKKAVLWHTDTLKSKTNLEE--HSSLI-TDVRFSPSMPRLATSSFDKTVR 579 (792)
Q Consensus 514 ~V~~lafspdg~~Lasgs~-----------Dg~I~vWdl~t~~~~~~l~~--h~~~V-~~i~fspdg~~Lasgs~Dg~V~ 579 (792)
.|.-+.|||+.+||+|-+. ...|+|||+.+|...+.+.. ....+ .-+.||.|++++|.-..|+ |.
T Consensus 251 ~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~s-is 329 (698)
T KOG2314|consen 251 GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNS-IS 329 (698)
T ss_pred CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccce-EE
Confidence 3888999999999998652 25799999999999888875 22223 3468999999999887755 99
Q ss_pred EEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeC-----CCcEEEEEcCCCeeEEEee---CCeeEEEEecCCCE
Q 003840 580 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDG-----DGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLGR 651 (792)
Q Consensus 580 IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~-----Dg~I~iwdl~~~~~~~~~~---~~~~~v~~sp~~~~ 651 (792)
||+..+ -..+..-.-.-..|....|+|.+. +||--.. -..+.+-.+.++..++... -....+.|-..|.+
T Consensus 330 IyEtps-f~lld~Kslki~gIr~FswsP~~~-llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdy 407 (698)
T KOG2314|consen 330 IYETPS-FMLLDKKSLKISGIRDFSWSPTSN-LLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDY 407 (698)
T ss_pred EEecCc-eeeecccccCCccccCcccCCCcc-eEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcE
Confidence 998875 222222222345688899999865 4433221 1356677777776665432 23344667777777
Q ss_pred EEEEEc-------CC---eEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC----eEEEEECC-CCCCcceE
Q 003840 652 YLAAAA-------EN---VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVG-SGSEGECV 716 (792)
Q Consensus 652 lla~s~-------dg---~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d----~I~IwDl~-s~~~~~~i 716 (792)
|++-.. .| .+.|+.++........-.-...|...+|.|.|+.+++.+.+ ++.+|.++ +......+
T Consensus 408 LcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lV 487 (698)
T KOG2314|consen 408 LCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLV 487 (698)
T ss_pred EEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhh
Confidence 765432 11 35566665543322222345678899999999987766544 79999988 44444555
Q ss_pred EEeecCCCceEEEEEeCCCCEEEEEEc---CCeEEEEECCCC--cEEEEcccCCCeEEEEEeCCCCEEEEEeCCC
Q 003840 717 HELSCNGNKFHSCVFHPTYPSLLVIGC---YQSLELWNMSEN--KTMTLTAHEGLIAALAVSTETGYVASASHDK 786 (792)
Q Consensus 717 ~~~~~~~~~i~si~fspdg~~L~sgs~---dg~I~IwDl~~~--~~~~~~~h~~~V~sl~fspdg~~LaSgs~DG 786 (792)
..+.. ...+.+.|+|.|+++++++- .|.+.+||+.-. +.+....|. ..+.+.|.|.|+|+++++.-+
T Consensus 488 k~~dk--~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~-~at~veWDPtGRYvvT~ss~w 559 (698)
T KOG2314|consen 488 KELDK--KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHF-AATEVEWDPTGRYVVTSSSSW 559 (698)
T ss_pred hhhcc--cccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCcccc-ccccceECCCCCEEEEeeehh
Confidence 55543 55788999999999888754 579999999843 333344443 367899999999999998643
No 234
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.50 E-value=1.5e-12 Score=141.30 Aligned_cols=238 Identities=17% Similarity=0.210 Sum_probs=173.1
Q ss_pred cCCCCEEEEEECCCCCeE-EEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCC
Q 003840 552 EHSSLITDVRFSPSMPRL-ATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG 630 (792)
Q Consensus 552 ~h~~~V~~i~fspdg~~L-asgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~ 630 (792)
.+....+.|..+|||.|+ ++|.+.-.|++||+.+ ..++.-......|..+....|+-.-++.-..|.+|-+...-..
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlan--LSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~ 126 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLAN--LSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGR 126 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEccc--ceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCe
Confidence 377888999999999974 6777888999999986 2233222333444444433332222333445777776554333
Q ss_pred eeEEEeeCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCC
Q 003840 631 SCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGS 709 (792)
Q Consensus 631 ~~~~~~~~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s 709 (792)
.....+......++++.-..-+++++....|+-++++.|..+..+....+.+++|..++...+|++|+.+ .|.+||.++
T Consensus 127 hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ 206 (703)
T KOG2321|consen 127 HYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRD 206 (703)
T ss_pred eeeeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchh
Confidence 3333344455667777766778888888999999999999999988888999999999999999999988 999999987
Q ss_pred CCCcceEEE---eecCC-----CceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEcccCC--CeEEEEEeCC--CC
Q 003840 710 GSEGECVHE---LSCNG-----NKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEG--LIAALAVSTE--TG 777 (792)
Q Consensus 710 ~~~~~~i~~---~~~~~-----~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~~~~~h~~--~V~sl~fspd--g~ 777 (792)
......+.. +..+. ..|+++.|+.+|-.+++|+.+|.|.|||++..+++....|.. +|..+.|.+. ..
T Consensus 207 ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~ 286 (703)
T KOG2321|consen 207 KSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQN 286 (703)
T ss_pred hhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCc
Confidence 643332221 11222 238999999999999999999999999999999997777754 6888888664 45
Q ss_pred EEEEEeCCCcEEEeC
Q 003840 778 YVASASHDKFVKLWK 792 (792)
Q Consensus 778 ~LaSgs~DG~I~IWd 792 (792)
.|+++ +...++|||
T Consensus 287 ~v~S~-Dk~~~kiWd 300 (703)
T KOG2321|consen 287 KVVSM-DKRILKIWD 300 (703)
T ss_pred eEEec-chHHhhhcc
Confidence 66655 456789997
No 235
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.50 E-value=8.2e-12 Score=141.27 Aligned_cols=231 Identities=19% Similarity=0.207 Sum_probs=159.4
Q ss_pred CCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCC---CcEEEEeCCCCCceeEEecccCCCeEEEEEcCCC
Q 003840 533 DKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD---KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNK 609 (792)
Q Consensus 533 Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~D---g~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~ 609 (792)
...|.++|.+.. ....+..+...+...+|+|||++|+.++.+ ..|++||+.++ .. ..+..+...+.+++|+|++
T Consensus 169 ~~~l~~~d~~g~-~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g-~~-~~~~~~~~~~~~~~~spDg 245 (417)
T TIGR02800 169 RYELQVADYDGA-NPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATG-QR-EKVASFPGMNGAPAFSPDG 245 (417)
T ss_pred cceEEEEcCCCC-CCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCC-CE-EEeecCCCCccceEECCCC
Confidence 346888887644 345565677789999999999999887654 47999999873 22 3333455667789999999
Q ss_pred CeEEEEEeCCC--cEEEEEcCCCeeEEEeeC--CeeEEEEecCCCEEEEEEcC-C--eEEEEECCCCeEEEEecCCCCCe
Q 003840 610 DDLICSCDGDG--EIRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYLAAAAE-N--VVSILDAETQACRLSLQGHTKPI 682 (792)
Q Consensus 610 ~~ll~sgs~Dg--~I~iwdl~~~~~~~~~~~--~~~~v~~sp~~~~lla~s~d-g--~I~i~D~~t~~~~~~l~~h~~~V 682 (792)
+.++++.+.++ .|++||+.++........ ......|++++.+++.++.. + .|+++|+.+++.. .+..+...+
T Consensus 246 ~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~~~ 324 (417)
T TIGR02800 246 SKLAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFRGGYN 324 (417)
T ss_pred CEEEEEECCCCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCCc
Confidence 98887776655 588999988765443322 23457899999988877653 2 6888898877644 333345667
Q ss_pred EEEEEcCCCCEEEEEeCC----eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCC---eEEEEECCCC
Q 003840 683 DSVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ---SLELWNMSEN 755 (792)
Q Consensus 683 ~sv~~spdg~~Las~s~d----~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg---~I~IwDl~~~ 755 (792)
..++|+|+|++|+.++.+ .|.+||+.++. ...+.. ........|+|++++|+..+.++ .+++++....
T Consensus 325 ~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~----~~~l~~-~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g~ 399 (417)
T TIGR02800 325 ASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGG----ERVLTD-TGLDESPSFAPNGRMILYATTRGGRGVLGLVSTDGR 399 (417)
T ss_pred cCeEECCCCCEEEEEEccCCceEEEEEeCCCCC----eEEccC-CCCCCCceECCCCCEEEEEEeCCCcEEEEEEECCCc
Confidence 788999999988887654 68889987642 122221 12234568999999998887764 5667776655
Q ss_pred cEEEEcccCCCeEEEEE
Q 003840 756 KTMTLTAHEGLIAALAV 772 (792)
Q Consensus 756 ~~~~~~~h~~~V~sl~f 772 (792)
....+..+.+.+..++|
T Consensus 400 ~~~~~~~~~g~~~~~~w 416 (417)
T TIGR02800 400 FRARLPLGNGDVREPAW 416 (417)
T ss_pred eeeECCCCCCCcCCCCC
Confidence 44444444555555555
No 236
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.50 E-value=9.8e-13 Score=135.25 Aligned_cols=250 Identities=17% Similarity=0.272 Sum_probs=190.0
Q ss_pred cceeeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEC-CCCceeEEec-cCCCCEEEEEECCCCCeEEEEeCCCc
Q 003840 500 FSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHT-DTLKSKTNLE-EHSSLITDVRFSPSMPRLATSSFDKT 577 (792)
Q Consensus 500 ~~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl-~t~~~~~~l~-~h~~~V~~i~fspdg~~Lasgs~Dg~ 577 (792)
+.+..+..++||.+.|++...-|...-+++.+.|.+++||-- +.+..-..+. .-..+++++.+.++...|++|-..|+
T Consensus 12 ~kp~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngt 91 (404)
T KOG1409|consen 12 KKPELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGT 91 (404)
T ss_pred cchhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecce
Confidence 445567789999999999999998889999999999999953 4444444333 34678999999999999999999999
Q ss_pred EEEEeCCCC---CceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEE--eeCCeeEEEEecCCCEE
Q 003840 578 VRVWDADNP---GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV--FKGGTAQMRFQPHLGRY 652 (792)
Q Consensus 578 V~IWdl~s~---~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~--~~~~~~~v~~sp~~~~l 652 (792)
+.-+.+... ....+.+..|...|..+.|+.... .+++++.|..+.---.+.+..+.. +......+.+.-. +.
T Consensus 92 vtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e-~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~--~~ 168 (404)
T KOG1409|consen 92 VTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHE-WVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDAL--YA 168 (404)
T ss_pred EEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCce-eEEEeccccceEEEeeccCCcccceEeeccCCCCceeeE--EE
Confidence 998877642 345567778999999999987644 555888787665544444444332 2222222222222 55
Q ss_pred EEEEcCCeEEEEEC--CCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEE
Q 003840 653 LAAAAENVVSILDA--ETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSC 729 (792)
Q Consensus 653 la~s~dg~I~i~D~--~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si 729 (792)
++|...|.|.+..+ ....++.++.+|...+.+++|.+...+|.+|..| .|.+||+.-. .....++.+|...+..+
T Consensus 169 fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~--~g~~~el~gh~~kV~~l 246 (404)
T KOG1409|consen 169 FVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGR--KGTAYELQGHNDKVQAL 246 (404)
T ss_pred EecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCC--cceeeeeccchhhhhhh
Confidence 55666666665544 4457888999999999999999999999999999 9999999643 24566777888889988
Q ss_pred EEeCCCCEEEEEEcCCeEEEEECCC
Q 003840 730 VFHPTYPSLLVIGCYQSLELWNMSE 754 (792)
Q Consensus 730 ~fspdg~~L~sgs~dg~I~IwDl~~ 754 (792)
..-+.-+.+++++.||.|.+||++.
T Consensus 247 ~~~~~t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 247 SYAQHTRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred hhhhhheeeeeccCCCeEEEEeccc
Confidence 8888888999999999999999864
No 237
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.49 E-value=2e-12 Score=135.19 Aligned_cols=235 Identities=16% Similarity=0.175 Sum_probs=179.0
Q ss_pred CCCCEEEEEECCCCC--eEEEEeCCCcEEEEeCCCCCce-----eEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEE
Q 003840 553 HSSLITDVRFSPSMP--RLATSSFDKTVRVWDADNPGYS-----LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYW 625 (792)
Q Consensus 553 h~~~V~~i~fspdg~--~Lasgs~Dg~V~IWdl~s~~~~-----i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iw 625 (792)
....|+.++|..++. .|+..+.|..+..+.+...+.. +.........|..++... ..|++|..+|.+.+|
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~d---g~Litc~~sG~l~~~ 130 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLAD---GTLITCVSSGNLQVR 130 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhcC---CEEEEEecCCcEEEE
Confidence 445677788876554 4444446666777776653211 123444566777777652 245588899999999
Q ss_pred EcCCCe-----eEEEe-eCCeeEEEEecCCCEEEE-EEcC--CeEEEEECCCCeEEEEecCC---------CCCeEEEEE
Q 003840 626 SINNGS-----CTRVF-KGGTAQMRFQPHLGRYLA-AAAE--NVVSILDAETQACRLSLQGH---------TKPIDSVCW 687 (792)
Q Consensus 626 dl~~~~-----~~~~~-~~~~~~v~~sp~~~~lla-~s~d--g~I~i~D~~t~~~~~~l~~h---------~~~V~sv~~ 687 (792)
.++.+. .+..- -.+...+.-++...++++ |+.. ..+.|||++..+.++.-+.- .-+++++.|
T Consensus 131 ~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~F 210 (412)
T KOG3881|consen 131 HDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRF 210 (412)
T ss_pred eccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeecccee
Confidence 998443 33222 234555666777777776 6667 79999999998777654432 235778889
Q ss_pred cCC--CCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE--EEcc
Q 003840 688 DPS--GELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM--TLTA 762 (792)
Q Consensus 688 spd--g~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~--~~~~ 762 (792)
.+. ...|++++.- .|++||.+..+ +++..+......++++...|++++|++|...+.+..||++.++.. .+.+
T Consensus 211 l~g~~~~~fat~T~~hqvR~YDt~~qR--RPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg 288 (412)
T KOG3881|consen 211 LEGSPNYKFATITRYHQVRLYDTRHQR--RPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKG 288 (412)
T ss_pred cCCCCCceEEEEecceeEEEecCcccC--cceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCC
Confidence 887 7889999888 99999998654 677788888999999999999999999999999999999999988 4778
Q ss_pred cCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003840 763 HEGLIAALAVSTETGYVASASHDKFVKLWK 792 (792)
Q Consensus 763 h~~~V~sl~fspdg~~LaSgs~DG~I~IWd 792 (792)
..+.|++|..+|...+||+||-|..|||+|
T Consensus 289 ~tGsirsih~hp~~~~las~GLDRyvRIhD 318 (412)
T KOG3881|consen 289 ITGSIRSIHCHPTHPVLASCGLDRYVRIHD 318 (412)
T ss_pred ccCCcceEEEcCCCceEEeeccceeEEEee
Confidence 999999999999999999999999999997
No 238
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.49 E-value=1.7e-11 Score=139.48 Aligned_cols=232 Identities=15% Similarity=0.090 Sum_probs=160.9
Q ss_pred eEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCC---CcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCe
Q 003840 535 KAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD---KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDD 611 (792)
Q Consensus 535 ~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~D---g~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ 611 (792)
.|.++|.+.+. ...+..+...+...+|+|||+.|+..+.+ ..|++||+.++ . ...+....+.+....|+|+|+.
T Consensus 180 ~l~~~d~~g~~-~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g-~-~~~l~~~~g~~~~~~~SpDG~~ 256 (430)
T PRK00178 180 TLQRSDYDGAR-AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTG-R-REQITNFEGLNGAPAWSPDGSK 256 (430)
T ss_pred EEEEECCCCCC-ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCC-C-EEEccCCCCCcCCeEECCCCCE
Confidence 47778877544 45565677789999999999998877644 35899999863 2 2333334455667999999998
Q ss_pred EEEEEeCCC--cEEEEEcCCCeeEEEee--CCeeEEEEecCCCEEEEEEcC---CeEEEEECCCCeEEEEecCCCCCeEE
Q 003840 612 LICSCDGDG--EIRYWSINNGSCTRVFK--GGTAQMRFQPHLGRYLAAAAE---NVVSILDAETQACRLSLQGHTKPIDS 684 (792)
Q Consensus 612 ll~sgs~Dg--~I~iwdl~~~~~~~~~~--~~~~~v~~sp~~~~lla~s~d---g~I~i~D~~t~~~~~~l~~h~~~V~s 684 (792)
++++...+| .|++||+.+++...... .......|+|+++.++..+.. ..|+++|+.+++...... .......
T Consensus 257 la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~-~~~~~~~ 335 (430)
T PRK00178 257 LAFVLSKDGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTF-VGNYNAR 335 (430)
T ss_pred EEEEEccCCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec-CCCCccc
Confidence 887776666 58888999877654332 234557899999988877652 368888988776443222 2233445
Q ss_pred EEEcCCCCEEEEEeCC----eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcC---CeEEEEECCCCcE
Q 003840 685 VCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY---QSLELWNMSENKT 757 (792)
Q Consensus 685 v~~spdg~~Las~s~d----~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~d---g~I~IwDl~~~~~ 757 (792)
..|+|+|++|+..+.+ .|.+||+.++.. .. +.. ........|+|+|++|+..+.+ ..|+++++.....
T Consensus 336 ~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~-~~---lt~-~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~~~ 410 (430)
T PRK00178 336 PRLSADGKTLVMVHRQDGNFHVAAQDLQRGSV-RI---LTD-TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGRVR 410 (430)
T ss_pred eEECCCCCEEEEEEccCCceEEEEEECCCCCE-EE---ccC-CCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCce
Confidence 7899999998877643 588999987632 22 221 1122356899999999887765 3688888876665
Q ss_pred EEEcccCCCeEEEEEeCC
Q 003840 758 MTLTAHEGLIAALAVSTE 775 (792)
Q Consensus 758 ~~~~~h~~~V~sl~fspd 775 (792)
..+..+.+.+...+|+|-
T Consensus 411 ~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 411 LPLPTAQGEVREPSWSPY 428 (430)
T ss_pred EECcCCCCCcCCCccCCC
Confidence 556556677788888763
No 239
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.48 E-value=1.2e-11 Score=140.84 Aligned_cols=201 Identities=16% Similarity=0.218 Sum_probs=146.0
Q ss_pred cEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeC--CCcEEEEEcCCCeeEEE--eeCCeeEEEEecCCCEE
Q 003840 577 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDG--DGEIRYWSINNGSCTRV--FKGGTAQMRFQPHLGRY 652 (792)
Q Consensus 577 ~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~--Dg~I~iwdl~~~~~~~~--~~~~~~~v~~sp~~~~l 652 (792)
.|.+||.+ +...+.+..+...+.+.+|+||++.++++... +..|++||+.+++.... +.+......|+|+++.+
T Consensus 183 ~l~~~d~d--g~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~l 260 (435)
T PRK05137 183 RLAIMDQD--GANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKV 260 (435)
T ss_pred EEEEECCC--CCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEE
Confidence 68888875 44556677788899999999999887766543 46899999998865433 34556678999999988
Q ss_pred EEEE-cCC--eEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC----eEEEEECCCCCCcceEEEeecCCCc
Q 003840 653 LAAA-AEN--VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNK 725 (792)
Q Consensus 653 la~s-~dg--~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d----~I~IwDl~s~~~~~~i~~~~~~~~~ 725 (792)
++.. .++ .|++||++++... .+..+.....+.+|+|||++|+..+.. .|++||+..+. ...+......
T Consensus 261 a~~~~~~g~~~Iy~~d~~~~~~~-~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~----~~~lt~~~~~ 335 (435)
T PRK05137 261 VMSLSQGGNTDIYTMDLRSGTTT-RLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSN----PRRISFGGGR 335 (435)
T ss_pred EEEEecCCCceEEEEECCCCceE-EccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCC----eEEeecCCCc
Confidence 7554 344 5888899887654 455566667789999999988877643 68888986542 2233333445
Q ss_pred eEEEEEeCCCCEEEEEEcCC---eEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEeCC
Q 003840 726 FHSCVFHPTYPSLLVIGCYQ---SLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHD 785 (792)
Q Consensus 726 i~si~fspdg~~L~sgs~dg---~I~IwDl~~~~~~~~~~h~~~V~sl~fspdg~~LaSgs~D 785 (792)
+....|+|+|++|+....++ .|.+||+.++....+. ....+..+.|+|||++|+..+.+
T Consensus 336 ~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~lt-~~~~~~~p~~spDG~~i~~~~~~ 397 (435)
T PRK05137 336 YSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERILT-SGFLVEGPTWAPNGRVIMFFRQT 397 (435)
T ss_pred ccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceEecc-CCCCCCCCeECCCCCEEEEEEcc
Confidence 66789999999998876542 6889998766544333 23357789999999998776553
No 240
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.47 E-value=4.8e-13 Score=142.86 Aligned_cols=278 Identities=13% Similarity=0.186 Sum_probs=209.4
Q ss_pred ceEEEEeCCCeeeecCCC---eeEeCCCcchhhcccccccCCCCCCceeeeccCCCCCCCCCCCcceeccCCcceeeeee
Q 003840 431 PLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANS 507 (792)
Q Consensus 431 ~~l~~s~Dg~~~~ss~s~---~lWD~~tg~~~~~~~~~~~~g~~d~~v~~~l~~d~~~~~d~~~~~~d~~~~~~~~~~~~ 507 (792)
..+.|...|+.+++++++ .+|||..+..+. ..
T Consensus 146 ntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l---------------------------------------------~f 180 (559)
T KOG1334|consen 146 NTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKL---------------------------------------------SF 180 (559)
T ss_pred ceeeecccCceeeccCccceEEeehhhccCccc---------------------------------------------cc
Confidence 367888899988888777 558887665321 12
Q ss_pred eecCCCCeEEEEEcC--CCCEEEEEeCCCeEEEEECC-CCce--eEEeccCCCCEEEEEECCCCC-eEEEEeCCCcEEEE
Q 003840 508 VRASTSKVICCHFSS--DGKLLATGGHDKKAVLWHTD-TLKS--KTNLEEHSSLITDVRFSPSMP-RLATSSFDKTVRVW 581 (792)
Q Consensus 508 l~~H~~~V~~lafsp--dg~~Lasgs~Dg~I~vWdl~-t~~~--~~~l~~h~~~V~~i~fspdg~-~Lasgs~Dg~V~IW 581 (792)
..+|...|.-..|-| +...|++++.||.|++=.+. ++.+ .+.+..|.+.|..++.-|+.. .|++++.|+.|.-+
T Consensus 181 ~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~ 260 (559)
T KOG1334|consen 181 ESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHI 260 (559)
T ss_pred ccccccchhhhhccCCCCCcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeee
Confidence 346777777777877 44689999999999988764 3333 345667999999999999655 69999999999999
Q ss_pred eCCCCC--ceeEEecccCC---CeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeE------EE---------eeCCee
Q 003840 582 DADNPG--YSLRTFMGHSA---SVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT------RV---------FKGGTA 641 (792)
Q Consensus 582 dl~s~~--~~i~~~~~h~~---~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~------~~---------~~~~~~ 641 (792)
|++... ..+.....+.. ...+|+..|...+.+++++.|-.+++||.+.-... .. ....++
T Consensus 261 Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~IT 340 (559)
T KOG1334|consen 261 DLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNIT 340 (559)
T ss_pred eeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccce
Confidence 998632 11222223333 57889999999999999999999999998753211 11 234678
Q ss_pred EEEEecCCCEEEEEEcCCeEEEEECCCC------------eEEE-EecCCCC--CeEEEE-EcCCCCEEEEEeCC-eEEE
Q 003840 642 QMRFQPHLGRYLAAAAENVVSILDAETQ------------ACRL-SLQGHTK--PIDSVC-WDPSGELLASVSED-SVRV 704 (792)
Q Consensus 642 ~v~~sp~~~~lla~s~dg~I~i~D~~t~------------~~~~-~l~~h~~--~V~sv~-~spdg~~Las~s~d-~I~I 704 (792)
+++|+.+++.+++...|-.|++|.-..+ ..+. .+++|.. .|.++- |-|..+|+++|++- .|.|
T Consensus 341 gl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFi 420 (559)
T KOG1334|consen 341 GLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFI 420 (559)
T ss_pred eEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEE
Confidence 8999999999999999999999954322 1222 3677754 366665 45778899999988 9999
Q ss_pred EECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCc
Q 003840 705 WTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK 756 (792)
Q Consensus 705 wDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~ 756 (792)
|+-.++ +.+..+.+....|.|+.-+|.-..||+++-|..|+||...+.+
T Consensus 421 W~K~t~---eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~e 469 (559)
T KOG1334|consen 421 WDKKTG---EIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTPLTAE 469 (559)
T ss_pred Eecchh---HHHHHhhcccceEeccCCCCCCchhhccCCccceeeecCCccc
Confidence 998776 6666777777789999999999999999999999999874433
No 241
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.46 E-value=2.2e-11 Score=138.67 Aligned_cols=231 Identities=15% Similarity=0.138 Sum_probs=156.7
Q ss_pred eEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCC-C--cEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCe
Q 003840 535 KAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD-K--TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDD 611 (792)
Q Consensus 535 ~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~D-g--~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ 611 (792)
.|.++|.+... ...+..+...+.+..|+|||+.|+..+.+ + .|++||+.++ .. ..+....+......|+||++.
T Consensus 199 ~l~i~d~dG~~-~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg-~~-~~lt~~~g~~~~~~wSPDG~~ 275 (448)
T PRK04792 199 QLMIADYDGYN-EQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQ-VR-EKVTSFPGINGAPRFSPDGKK 275 (448)
T ss_pred EEEEEeCCCCC-ceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCC-Ce-EEecCCCCCcCCeeECCCCCE
Confidence 67777876544 34556667789999999999988876543 3 5888898763 32 223323334457899999998
Q ss_pred EEEEEeCCCc--EEEEEcCCCeeEEEeeC--CeeEEEEecCCCEEEEEEc-C--CeEEEEECCCCeEEEEecCCCCCeEE
Q 003840 612 LICSCDGDGE--IRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYLAAAA-E--NVVSILDAETQACRLSLQGHTKPIDS 684 (792)
Q Consensus 612 ll~sgs~Dg~--I~iwdl~~~~~~~~~~~--~~~~v~~sp~~~~lla~s~-d--g~I~i~D~~t~~~~~~l~~h~~~V~s 684 (792)
++++.+.+|. |++||+.+++....... ......|+|++.+++..+. + ..|+++|+.+++..... ........
T Consensus 276 La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt-~~g~~~~~ 354 (448)
T PRK04792 276 LALVLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLT-FEGEQNLG 354 (448)
T ss_pred EEEEEeCCCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEe-cCCCCCcC
Confidence 8888877775 78889888765543332 3456889999998887765 2 36788888877654322 12223445
Q ss_pred EEEcCCCCEEEEEeCC----eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCC---eEEEEECCCCcE
Q 003840 685 VCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ---SLELWNMSENKT 757 (792)
Q Consensus 685 v~~spdg~~Las~s~d----~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg---~I~IwDl~~~~~ 757 (792)
.+|+|||++|+..+.+ .|.++|+.++.. ..+... .......|+|+|++|+....++ .|++++......
T Consensus 355 ~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~----~~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~~~ 429 (448)
T PRK04792 355 GSITPDGRSMIMVNRTNGKFNIARQDLETGAM----QVLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGRFK 429 (448)
T ss_pred eeECCCCCEEEEEEecCCceEEEEEECCCCCe----EEccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECCCCce
Confidence 7899999988876643 566778776532 122211 1223458999999988776553 488888866655
Q ss_pred EEEcccCCCeEEEEEeC
Q 003840 758 MTLTAHEGLIAALAVST 774 (792)
Q Consensus 758 ~~~~~h~~~V~sl~fsp 774 (792)
..+..+.+.+...+|+|
T Consensus 430 ~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 430 ARLPAGQGEVKSPAWSP 446 (448)
T ss_pred EECcCCCCCcCCCccCC
Confidence 56666667788888887
No 242
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.45 E-value=1.9e-13 Score=145.06 Aligned_cols=228 Identities=14% Similarity=0.181 Sum_probs=183.9
Q ss_pred CCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeE
Q 003840 554 SSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT 633 (792)
Q Consensus 554 ~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~ 633 (792)
...-..+.|+.+|++|+.|+..|.|..+|..+ +.....+. -...|.++.|..+.. +|++ .-...++|||-. |..+
T Consensus 129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t-~~L~~Ei~-v~Etv~Dv~~LHneq-~~AV-AQK~y~yvYD~~-GtEl 203 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVT-KKLHFEIN-VMETVRDVTFLHNEQ-FFAV-AQKKYVYVYDNN-GTEL 203 (545)
T ss_pred ccCCeeeeecCCccEEEecCCccceeeeeccc-ceeeeeee-hhhhhhhhhhhcchH-HHHh-hhhceEEEecCC-CcEE
Confidence 44567889999999999999999999999998 44444443 456788999987744 4534 357889999965 4445
Q ss_pred EEee--CCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCC
Q 003840 634 RVFK--GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSG 710 (792)
Q Consensus 634 ~~~~--~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~ 710 (792)
..++ ..+..+.|.|..-.|++++..|.+..-|+.+|+.+..+....+.+..++-+|-+..+-+|..+ +|.+|.-.+.
T Consensus 204 HClk~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~sk 283 (545)
T KOG1272|consen 204 HCLKRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSK 283 (545)
T ss_pred eehhhcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCc
Confidence 4444 356778899997778888889999999999999999998888999999999998889888888 9999998765
Q ss_pred CCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEeCCCcEE
Q 003840 711 SEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVK 789 (792)
Q Consensus 711 ~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~ 789 (792)
+++..+-+|.++|.++++.++|.|+++.+.|..|+|||++....+ ++.. ......++||..| +++++....|.
T Consensus 284 ---ePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkg--lLA~~~G~~v~ 357 (545)
T KOG1272|consen 284 ---EPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKG--LLALSYGDHVQ 357 (545)
T ss_pred ---chHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-CCCcccccccccc--ceeeecCCeee
Confidence 677778899999999999999999999999999999999987755 3333 5567788888766 44455666799
Q ss_pred EeC
Q 003840 790 LWK 792 (792)
Q Consensus 790 IWd 792 (792)
||.
T Consensus 358 iw~ 360 (545)
T KOG1272|consen 358 IWK 360 (545)
T ss_pred eeh
Confidence 994
No 243
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.44 E-value=1.9e-10 Score=124.70 Aligned_cols=256 Identities=10% Similarity=0.075 Sum_probs=168.5
Q ss_pred CeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeC----------CCcEEEEeCCCCCceeEEeccc-------
Q 003840 534 KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF----------DKTVRVWDADNPGYSLRTFMGH------- 596 (792)
Q Consensus 534 g~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~----------Dg~V~IWdl~s~~~~i~~~~~h------- 596 (792)
+.|.|.|.++++.+..+.....+- .+ ++||++.|++++. +..|.|||+.+ .+.+..+.-.
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t-~~~~~~i~~p~~p~~~~ 103 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQT-HLPIADIELPEGPRFLV 103 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECcc-CcEEeEEccCCCchhhc
Confidence 899999999999999887544333 24 9999998877765 78899999998 5566555432
Q ss_pred CCCeEEEEEcCCCCeEEEEEeC-CCcEEEEEcCCCeeEEEeeCCeeEEEEecCCCEEEEEEcCCeEEEEECCC-CeE-EE
Q 003840 597 SASVMSLDFHPNKDDLICSCDG-DGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAET-QAC-RL 673 (792)
Q Consensus 597 ~~~V~sl~fspd~~~ll~sgs~-Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t-~~~-~~ 673 (792)
......++++|||+.++++--. +..|.++|+.+++.+..+.-+.....+-.....+++.|.||......+.+ ++. ..
T Consensus 104 ~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~ 183 (352)
T TIGR02658 104 GTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIK 183 (352)
T ss_pred cCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEe
Confidence 1233478999999888766534 89999999999999988775443333322223333444555444433222 221 11
Q ss_pred E---ecCCCCCeEE-EEEcC-CCCEEEEEeCCeEEEEECCCCCC--cceEEEeec-------CCCceEEEEEeCCCCEEE
Q 003840 674 S---LQGHTKPIDS-VCWDP-SGELLASVSEDSVRVWTVGSGSE--GECVHELSC-------NGNKFHSCVFHPTYPSLL 739 (792)
Q Consensus 674 ~---l~~h~~~V~s-v~~sp-dg~~Las~s~d~I~IwDl~s~~~--~~~i~~~~~-------~~~~i~si~fspdg~~L~ 739 (792)
. +.....++.. -.|.+ +|++++...++.|.+.|+..... ...+..+.. ....+.-++++++++.++
T Consensus 184 ~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~ly 263 (352)
T TIGR02658 184 PTEVFHPEDEYLINHPAYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIY 263 (352)
T ss_pred eeeeecCCccccccCCceEcCCCcEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEE
Confidence 1 1110011100 03445 88888888889999999754321 112222111 122344599999999998
Q ss_pred EEEc----------CCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCC-EEEEEe-CCCcEEEeC
Q 003840 740 VIGC----------YQSLELWNMSENKTMTLTAHEGLIAALAVSTETG-YVASAS-HDKFVKLWK 792 (792)
Q Consensus 740 sgs~----------dg~I~IwDl~~~~~~~~~~h~~~V~sl~fspdg~-~LaSgs-~DG~I~IWd 792 (792)
+... .+.|.++|..+++.+....-...+..++|++|++ +|++.+ .++.|.|+|
T Consensus 264 V~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD 328 (352)
T TIGR02658 264 LLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFD 328 (352)
T ss_pred EEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEE
Confidence 8532 2489999999999996665667899999999999 877666 478888875
No 244
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.44 E-value=2.4e-12 Score=128.20 Aligned_cols=213 Identities=18% Similarity=0.214 Sum_probs=155.7
Q ss_pred CCcceeccCCcceeeeeeee-cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeE--------------Eec---
Q 003840 490 GGRGMDVSQGFSFKEANSVR-ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKT--------------NLE--- 551 (792)
Q Consensus 490 ~~~~~d~~~~~~~~~~~~l~-~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~--------------~l~--- 551 (792)
.+.+|.+.... .+..++ .|...|+.+..-|+ ..|.+-+.|+.+.+|++.-...+. .+.
T Consensus 36 ~V~~w~lqt~r---~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~ 111 (323)
T KOG0322|consen 36 IVKMWVLQTER---DLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKP 111 (323)
T ss_pred eEEEEEeecCc---cchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccCcceEEEeeeeccccccccceeccCC
Confidence 34455554432 334455 56777888888776 467777788888888875421110 000
Q ss_pred ------------------------------------cCCCCEEEEEECC-CCC--eEEEEeCCCcEEEEeCCCCCc----
Q 003840 552 ------------------------------------EHSSLITDVRFSP-SMP--RLATSSFDKTVRVWDADNPGY---- 588 (792)
Q Consensus 552 ------------------------------------~h~~~V~~i~fsp-dg~--~Lasgs~Dg~V~IWdl~s~~~---- 588 (792)
...+.+.|..|.. +++ +|++|.++|.|.+||+.++.+
T Consensus 112 k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~ 191 (323)
T KOG0322|consen 112 KNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQL 191 (323)
T ss_pred CcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeecc
Confidence 0234456666433 233 467788899999999998422
Q ss_pred -----eeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCC--e-----eEEEeeCCeeEEEEecCCCEEEEEE
Q 003840 589 -----SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG--S-----CTRVFKGGTAQMRFQPHLGRYLAAA 656 (792)
Q Consensus 589 -----~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~--~-----~~~~~~~~~~~v~~sp~~~~lla~s 656 (792)
.+..+..|..+|.++.|.+.-+.=+ +|+.+..+..|++... . .+..-..++..+++.||++.+++++
T Consensus 192 ~~~~kv~~~~ash~qpvlsldyas~~~rGi-sgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAG 270 (323)
T KOG0322|consen 192 PQSSKVESPNASHKQPVLSLDYASSCDRGI-SGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAG 270 (323)
T ss_pred ccccccccchhhccCcceeeeechhhcCCc-CCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecc
Confidence 2334457999999999986533333 7777888899988653 2 2223345778899999999999999
Q ss_pred cCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEEC
Q 003840 657 AENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTV 707 (792)
Q Consensus 657 ~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl 707 (792)
.|+.|+||..++..++..++-|...|.+++|+|+..++|+++.| .|.+|++
T Consensus 271 WD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 271 WDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred cCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 99999999999999999999999999999999999999999999 9999986
No 245
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.43 E-value=1.3e-11 Score=127.67 Aligned_cols=227 Identities=18% Similarity=0.241 Sum_probs=142.9
Q ss_pred eeecCCCCeEEEEEcCCCCEEEEEeC-CCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCC
Q 003840 507 SVRASTSKVICCHFSSDGKLLATGGH-DKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN 585 (792)
Q Consensus 507 ~l~~H~~~V~~lafspdg~~Lasgs~-Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s 585 (792)
.-.+| ..|+++.|.+||..|++++. |..|.|||.+++..+.......+.++-+.|+||+.+|+++..|+..++|....
T Consensus 191 ~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q 269 (445)
T KOG2139|consen 191 QDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQ 269 (445)
T ss_pred eCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcc
Confidence 34466 78999999999999999885 57899999999988777666678899999999999999999999999997665
Q ss_pred CCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCCeeEEEEecCCCEEEEEEcCCeEEEEE
Q 003840 586 PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILD 665 (792)
Q Consensus 586 ~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~lla~s~dg~I~i~D 665 (792)
.....+- .-..+.|...+|+|+|..++++++..-. +|.+.....-..+.. .++....+.+-|
T Consensus 270 ~wt~erw-~lgsgrvqtacWspcGsfLLf~~sgsp~--lysl~f~~~~~~~~~---------------~~~~k~~lliaD 331 (445)
T KOG2139|consen 270 SWTKERW-ILGSGRVQTACWSPCGSFLLFACSGSPR--LYSLTFDGEDSVFLR---------------PQSIKRVLLIAD 331 (445)
T ss_pred cceecce-eccCCceeeeeecCCCCEEEEEEcCCce--EEEEeecCCCccccC---------------cccceeeeeecc
Confidence 3333333 3345599999999999999999865544 343321110000000 111112222333
Q ss_pred CCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC---------eEEEEECCCCCCcceEEEeecCCCceEEEEEeC---
Q 003840 666 AETQACRLSLQGHTKPIDSVCWDPSGELLASVSED---------SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHP--- 733 (792)
Q Consensus 666 ~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d---------~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fsp--- 733 (792)
+..-....--.--.+++.+++|+|.|+||++.-.+ .|.+||.+..........-...+.....++|+|
T Consensus 332 L~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n 411 (445)
T KOG2139|consen 332 LQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKN 411 (445)
T ss_pred chhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeeccc
Confidence 32111000001123678899999999999987654 256677654322222111111122244455555
Q ss_pred CCCEEEEEEcCCeEEEEEC
Q 003840 734 TYPSLLVIGCYQSLELWNM 752 (792)
Q Consensus 734 dg~~L~sgs~dg~I~IwDl 752 (792)
++..|.++=+.|.|.-|++
T Consensus 412 ~g~lLsiaWsTGriq~ypl 430 (445)
T KOG2139|consen 412 EGRLLSIAWSTGRIQRYPL 430 (445)
T ss_pred CCcEEEEEeccCceEeeee
Confidence 4556666666677776665
No 246
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.42 E-value=6.3e-10 Score=116.41 Aligned_cols=265 Identities=16% Similarity=0.158 Sum_probs=187.0
Q ss_pred ecCCCCeEEEEEcCCCCEEEEEeC---CCeEEEEECCC--CceeE--EeccCCCCEEEEEECCCCCeEEEEeC-CCcEEE
Q 003840 509 RASTSKVICCHFSSDGKLLATGGH---DKKAVLWHTDT--LKSKT--NLEEHSSLITDVRFSPSMPRLATSSF-DKTVRV 580 (792)
Q Consensus 509 ~~H~~~V~~lafspdg~~Lasgs~---Dg~I~vWdl~t--~~~~~--~l~~h~~~V~~i~fspdg~~Lasgs~-Dg~V~I 580 (792)
-.+.+.++-|+|++++++|.++.. +|.|..|.++. |+... ........-+.|++++++++|+++.+ -|.|.+
T Consensus 36 v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v 115 (346)
T COG2706 36 VAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSV 115 (346)
T ss_pred ccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEE
Confidence 356677999999999999998865 47788887764 44322 12222334488999999999998876 578999
Q ss_pred EeCCCCCceeE--EecccCCC----------eEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEe----e--CCeeE
Q 003840 581 WDADNPGYSLR--TFMGHSAS----------VMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF----K--GGTAQ 642 (792)
Q Consensus 581 Wdl~s~~~~i~--~~~~h~~~----------V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~----~--~~~~~ 642 (792)
+-+...+.... ....|.+. +.+..|.|++++++++.-.--.|.+|++..+++.... + .+...
T Consensus 116 ~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRH 195 (346)
T COG2706 116 YPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRH 195 (346)
T ss_pred EEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcce
Confidence 99976554322 22335544 8899999999877766555678999999987765432 2 35677
Q ss_pred EEEecCCCEEEEEEc-CCeEEEEECCCC-eEEEEecC---------CCCCeEEEEEcCCCCEEEEEeCC--eEEEEECCC
Q 003840 643 MRFQPHLGRYLAAAA-ENVVSILDAETQ-ACRLSLQG---------HTKPIDSVCWDPSGELLASVSED--SVRVWTVGS 709 (792)
Q Consensus 643 v~~sp~~~~lla~s~-dg~I~i~D~~t~-~~~~~l~~---------h~~~V~sv~~spdg~~Las~s~d--~I~IwDl~s 709 (792)
+.|+|+++..++.++ +++|.+|..+.. ..+..+.. ...+.-.|.+++||++|.++... .|.+|.+..
T Consensus 196 i~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~ 275 (346)
T COG2706 196 IVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDP 275 (346)
T ss_pred EEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcC
Confidence 999999999888777 899999988773 22222211 23456788999999999999876 888998865
Q ss_pred CC-CcceEEEeecCCCceEEEEEeCCCCEEEEEEcCC-eEEEEEC--CCCcEEEEc--ccCCCeEEEEEe
Q 003840 710 GS-EGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ-SLELWNM--SENKTMTLT--AHEGLIAALAVS 773 (792)
Q Consensus 710 ~~-~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg-~I~IwDl--~~~~~~~~~--~h~~~V~sl~fs 773 (792)
.. ....+.....++...+.+.|++.+++|+++..++ .|.+|.. .++++..+. .......||.|.
T Consensus 276 ~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f~ 345 (346)
T COG2706 276 DGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLGRYAVVPEPVCVKFL 345 (346)
T ss_pred CCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEecccccCCCCcEEEEEc
Confidence 42 2344455555666688999999999999998875 6777755 455554222 334445566663
No 247
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.42 E-value=5.7e-12 Score=145.74 Aligned_cols=265 Identities=16% Similarity=0.201 Sum_probs=184.9
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEec------cCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCC
Q 003840 512 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE------EHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN 585 (792)
Q Consensus 512 ~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~------~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s 585 (792)
-+++.+..+-. +||++|. .-.|.+||+..+..+..+. .|...-.- .-.+.+++++..-+.+.+-+...
T Consensus 7 ~~~l~~~~~~~--~~llag~-gp~i~~yd~~s~~li~~~~~~~~~~~H~~e~~~---~l~~~~~v~~~~~~~v~~~~~~~ 80 (967)
T KOG0974|consen 7 LGPLNLPQLVS--DYLLAGS-GPEILVYDLSSGCLIRHLIQSKILEVHRGEGKV---KLLSGKIVTCAKSDEVYVKEASN 80 (967)
T ss_pred cccccchhhcc--ceeeecC-CCceEEeeCCchhHhhhhhhhcccccccccccc---eeccceEEEEEeecceeecchhh
Confidence 34455555554 4666654 4579999999876655443 33000000 01233556655444444433322
Q ss_pred CCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCCeeE-------EEEecCCCEEEEEEcC
Q 003840 586 PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQ-------MRFQPHLGRYLAAAAE 658 (792)
Q Consensus 586 ~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~-------v~~sp~~~~lla~s~d 658 (792)
.....+ ...|..-.+..+.. .++.+..+..+.+||...+...........+ +-++++.-++++++.-
T Consensus 81 --~~~~~~---s~wi~g~~l~~e~k-~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~ 154 (967)
T KOG0974|consen 81 --QIIERF---SDWIFGAKLFEENK-KIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVF 154 (967)
T ss_pred --hhhhhc---cccccccchhhhcc-eEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEecccc
Confidence 112222 23333334444433 4556777899999999988777665443322 2345555567778889
Q ss_pred CeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCE
Q 003840 659 NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPS 737 (792)
Q Consensus 659 g~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~ 737 (792)
+.|.+|+....+.-..+.+|++.|.++.|+.||++++++++| .+++|++.+.+... ....+|...++.|+|.|+ +
T Consensus 155 ~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~--~~~fgHsaRvw~~~~~~n--~ 230 (967)
T KOG0974|consen 155 GEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG--CTGFGHSARVWACCFLPN--R 230 (967)
T ss_pred ccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC--cccccccceeEEEEeccc--e
Confidence 999999988544444788999999999999999999999999 99999999875433 355678999999999999 8
Q ss_pred EEEEEcCCeEEEEECCCCcEEEEcccC-CCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003840 738 LLVIGCYQSLELWNMSENKTMTLTAHE-GLIAALAVSTETGYVASASHDKFVKLWK 792 (792)
Q Consensus 738 L~sgs~dg~I~IwDl~~~~~~~~~~h~-~~V~sl~fspdg~~LaSgs~DG~I~IWd 792 (792)
|++++.|-+.++|+........+..|. ..|+.++..++...++|++.||.|++|+
T Consensus 231 i~t~gedctcrvW~~~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~ 286 (967)
T KOG0974|consen 231 IITVGEDCTCRVWGVNGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWD 286 (967)
T ss_pred eEEeccceEEEEEecccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhh
Confidence 999999999999987766655666665 4799999999999999999999999996
No 248
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.42 E-value=1.4e-11 Score=123.99 Aligned_cols=108 Identities=23% Similarity=0.477 Sum_probs=87.2
Q ss_pred CCCCeEEEEEcCCCCEEEEEe--CC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcC---CeEEEEE
Q 003840 678 HTKPIDSVCWDPSGELLASVS--ED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY---QSLELWN 751 (792)
Q Consensus 678 h~~~V~sv~~spdg~~Las~s--~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~d---g~I~IwD 751 (792)
..++|.+++|+|+|+.|+++. .+ .|.+||++ .+.+..+. ...+..+.|+|+|++|++++.+ |.|.+||
T Consensus 58 ~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~----~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd 131 (194)
T PF08662_consen 58 KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK----GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWD 131 (194)
T ss_pred CCCceEEEEECcCCCEEEEEEccCCcccEEEcCc----ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEE
Confidence 345799999999999877654 33 89999996 24555543 4677889999999999998754 5799999
Q ss_pred CCCCcEEEEcccCCCeEEEEEeCCCCEEEEEeC------CCcEEEeC
Q 003840 752 MSENKTMTLTAHEGLIAALAVSTETGYVASASH------DKFVKLWK 792 (792)
Q Consensus 752 l~~~~~~~~~~h~~~V~sl~fspdg~~LaSgs~------DG~I~IWd 792 (792)
+++.+.+....|.. ++.++|+|||++|+++.. |+.++||+
T Consensus 132 ~~~~~~i~~~~~~~-~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~ 177 (194)
T PF08662_consen 132 VRKKKKISTFEHSD-ATDVEWSPDGRYLATATTSPRLRVDNGFKIWS 177 (194)
T ss_pred CCCCEEeeccccCc-EEEEEEcCCCCEEEEEEeccceeccccEEEEE
Confidence 99888886666654 789999999999999874 78889985
No 249
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.41 E-value=1.4e-10 Score=126.47 Aligned_cols=328 Identities=12% Similarity=0.185 Sum_probs=201.4
Q ss_pred ceEEEEeCCCeeeecCCC--eeEeCCCcchhhcccccc----cCCCCCCceeeeccCCCCC---CCCCCCcceeccCCcc
Q 003840 431 PLMMFGTDGAGTLTSPSN--QLWDDKDLELRADMDRLV----EDGSLDDNVESFLSHDDTD---PRDAGGRGMDVSQGFS 501 (792)
Q Consensus 431 ~~l~~s~Dg~~~~ss~s~--~lWD~~tg~~~~~~~~~~----~~g~~d~~v~~~l~~d~~~---~~d~~~~~~d~~~~~~ 501 (792)
.+.++|++|+..+.+... .|+++.+++.+-++.... .....+.....|-.....+ .......+|++..+.
T Consensus 38 ~v~~~S~~G~lfA~~~~~~v~i~~~~~~~~~lt~~~~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~- 116 (566)
T KOG2315|consen 38 NVFAYSNNGRLFAYSDNQVVKVFEIATLKVVLCVELKKTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGV- 116 (566)
T ss_pred eeEEEcCCCcEEEEEcCCeEEEEEccCCcEEEEeccceeeeeeecccccccccccccccccCCCCCCCceeeeeeccce-
Confidence 367888888887665444 677777764322222110 0011111121221111011 112233455555522
Q ss_pred eeeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCC--eEEE-----EeC
Q 003840 502 FKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP--RLAT-----SSF 574 (792)
Q Consensus 502 ~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~--~Las-----gs~ 574 (792)
....+......-+++.|+.|..+.|-- ..+.|.+|++.+.+.+. -.-|...|+.+.++|.+. .||+ .+.
T Consensus 117 --~~s~~q~k~Q~~W~~qfs~dEsl~arl-v~nev~f~~~~~f~~~~-~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGa 192 (566)
T KOG2315|consen 117 --QRSQIQKKMQNGWVPQFSIDESLAARL-VSNEVQFYDLGSFKTIQ-HKLSVSGITMLSLSPGPEPPFVAVYVPEKKGA 192 (566)
T ss_pred --ehhheehhhhcCcccccccchhhhhhh-hcceEEEEecCCcccee-eeeeccceeeEEecCCCCCceEEEEccCCCCC
Confidence 222232222223799999998654432 35689999998743322 234678899999999743 3332 244
Q ss_pred CCcEEEEeCCCCC--c--eeEEecccCCCeEEEEEcCCCCeEEEEEeC--C---------CcEEEEEcCCCeeEEEe--e
Q 003840 575 DKTVRVWDADNPG--Y--SLRTFMGHSASVMSLDFHPNKDDLICSCDG--D---------GEIRYWSINNGSCTRVF--K 637 (792)
Q Consensus 575 Dg~V~IWdl~s~~--~--~i~~~~~h~~~V~sl~fspd~~~ll~sgs~--D---------g~I~iwdl~~~~~~~~~--~ 637 (792)
-+.|+||.+...+ . ..++|. ...-..+.|++-+.-||+..+. | .+++++++....+...+ +
T Consensus 193 Pa~vri~~~~~~~~~~~~a~ksFF--kadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~ 270 (566)
T KOG2315|consen 193 PASVRIYKYPEEGQHQPVANKSFF--KADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKE 270 (566)
T ss_pred CcEEEEeccccccccchhhhcccc--ccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCC
Confidence 5679999887321 1 112222 2223367788877766654433 3 46888888855555444 5
Q ss_pred CCeeEEEEecCCCEEEEEEc--CCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC----eEEEEECCCCC
Q 003840 638 GGTAQMRFQPHLGRYLAAAA--ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVGSGS 711 (792)
Q Consensus 638 ~~~~~v~~sp~~~~lla~s~--dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d----~I~IwDl~s~~ 711 (792)
+++.++.|++++..++++.. -..+.|||++ +++++.+. +++-+++-|+|.|++|+.++-+ .|.|||+.+.
T Consensus 271 GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~--egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~- 346 (566)
T KOG2315|consen 271 GPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFP--EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNR- 346 (566)
T ss_pred CCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCC--CCCccceEECCCCCEEEEeecCCCCCceEEEeccch-
Confidence 78999999999988766544 6799999986 45555553 4677889999999999988866 6999999764
Q ss_pred CcceEEEeecCCCceEEEEEeCCCCEEEEEEc------CCeEEEEECCCCcEEEEcccCCCeEEEEEeC
Q 003840 712 EGECVHELSCNGNKFHSCVFHPTYPSLLVIGC------YQSLELWNMSENKTMTLTAHEGLIAALAVST 774 (792)
Q Consensus 712 ~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~------dg~I~IwDl~~~~~~~~~~h~~~V~sl~fsp 774 (792)
+++..+.. ...+.+.|+|||.+|+++++ |+.++||++....... .........++|-|
T Consensus 347 --K~i~~~~a--~~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l~~-~~f~sEL~qv~W~P 410 (566)
T KOG2315|consen 347 --KLIAKFKA--ANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLLHE-KMFKSELLQVEWRP 410 (566)
T ss_pred --hhcccccc--CCceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCceeeh-hhhhHhHhheeeee
Confidence 56665544 34567899999999999987 5789999987654331 11122566777765
No 250
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.40 E-value=1.5e-10 Score=131.03 Aligned_cols=236 Identities=16% Similarity=0.148 Sum_probs=156.7
Q ss_pred CeEEEEECCCCceeEEeccCCCCEEEEEECCCCCe--E-EEEeCCC--cEEEEeCCCCCceeEEecccCCCeEEEEEcCC
Q 003840 534 KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPR--L-ATSSFDK--TVRVWDADNPGYSLRTFMGHSASVMSLDFHPN 608 (792)
Q Consensus 534 g~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~--L-asgs~Dg--~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd 608 (792)
+.|.+.|.+.+.. ..+......+.+-+|+|||+. + ++...+| .|++.++..+ . ...+....+......|+||
T Consensus 165 ~~l~~~d~dG~~~-~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g-~-~~~lt~~~g~~~~p~wSPD 241 (428)
T PRK01029 165 GELWSVDYDGQNL-RPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENP-A-GKKILALQGNQLMPTFSPR 241 (428)
T ss_pred ceEEEEcCCCCCc-eEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCC-C-ceEeecCCCCccceEECCC
Confidence 4677778765543 445555666778899999975 2 3444444 4777788753 2 2333334555667899999
Q ss_pred CCeEEEEEeCCC----cEEEEEcCCC---eeEEEeeC---CeeEEEEecCCCEEEEEEc-CC--eEEEEECCC-CeEEEE
Q 003840 609 KDDLICSCDGDG----EIRYWSINNG---SCTRVFKG---GTAQMRFQPHLGRYLAAAA-EN--VVSILDAET-QACRLS 674 (792)
Q Consensus 609 ~~~ll~sgs~Dg----~I~iwdl~~~---~~~~~~~~---~~~~v~~sp~~~~lla~s~-dg--~I~i~D~~t-~~~~~~ 674 (792)
|+.++++...+| .+.+|++..+ ........ .....+|+|++..|+..+. +| .|+++++.. +.....
T Consensus 242 G~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~ 321 (428)
T PRK01029 242 KKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRL 321 (428)
T ss_pred CCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEE
Confidence 998888775544 3444776653 33333322 2356899999998887764 55 455555542 233344
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEeCC----eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcC---CeE
Q 003840 675 LQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY---QSL 747 (792)
Q Consensus 675 l~~h~~~V~sv~~spdg~~Las~s~d----~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~d---g~I 747 (792)
+..+...+...+|+|||++|+..+.+ .|++||+.++.. ..+......+....|+|||++|+....+ ..|
T Consensus 322 lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~----~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L 397 (428)
T PRK01029 322 LTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRD----YQLTTSPENKESPSWAIDSLHLVYSAGNSNESEL 397 (428)
T ss_pred eccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCe----EEccCCCCCccceEECCCCCEEEEEECCCCCceE
Confidence 44455667889999999988876543 699999987632 2222233456778999999988876543 479
Q ss_pred EEEECCCCcEEEEcccCCCeEEEEEeCCC
Q 003840 748 ELWNMSENKTMTLTAHEGLIAALAVSTET 776 (792)
Q Consensus 748 ~IwDl~~~~~~~~~~h~~~V~sl~fspdg 776 (792)
++||+.+++...+....+.+...+|+|-.
T Consensus 398 ~~vdl~~g~~~~Lt~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 398 YLISLITKKTRKIVIGSGEKRFPSWGAFP 426 (428)
T ss_pred EEEECCCCCEEEeecCCCcccCceecCCC
Confidence 99999998877666666677888898753
No 251
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.40 E-value=8.3e-11 Score=133.04 Aligned_cols=202 Identities=16% Similarity=0.235 Sum_probs=145.0
Q ss_pred cEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCC--CcEEEEEcCCCeeEEE--eeCCeeEEEEecCCCEE
Q 003840 577 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD--GEIRYWSINNGSCTRV--FKGGTAQMRFQPHLGRY 652 (792)
Q Consensus 577 ~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~D--g~I~iwdl~~~~~~~~--~~~~~~~v~~sp~~~~l 652 (792)
.|.++|.+. ...+.+..+...+.+.+|+|+++.++++...+ ..|++||+.+++.... +.+....++|+|+++.+
T Consensus 171 ~l~~~d~~g--~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l 248 (417)
T TIGR02800 171 ELQVADYDG--ANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKL 248 (417)
T ss_pred eEEEEcCCC--CCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEE
Confidence 577777753 33455666777899999999999887665443 5799999998865433 33455678999999988
Q ss_pred EEEEc-C--CeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC----eEEEEECCCCCCcceEEEeecCCCc
Q 003840 653 LAAAA-E--NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNK 725 (792)
Q Consensus 653 la~s~-d--g~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d----~I~IwDl~s~~~~~~i~~~~~~~~~ 725 (792)
++... + ..|++||+.++.... +..+........|++||++|+.++.. .|++||+.++. ...+..+...
T Consensus 249 ~~~~~~~~~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~----~~~l~~~~~~ 323 (417)
T TIGR02800 249 AVSLSKDGNPDIYVMDLDGKQLTR-LTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE----VRRLTFRGGY 323 (417)
T ss_pred EEEECCCCCccEEEEECCCCCEEE-CCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC----EEEeecCCCC
Confidence 76543 3 369999998875433 33454555678999999988776643 58888887542 2333444556
Q ss_pred eEEEEEeCCCCEEEEEEcCC---eEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEeCCC
Q 003840 726 FHSCVFHPTYPSLLVIGCYQ---SLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDK 786 (792)
Q Consensus 726 i~si~fspdg~~L~sgs~dg---~I~IwDl~~~~~~~~~~h~~~V~sl~fspdg~~LaSgs~DG 786 (792)
+..+.|+|++++|+.++.++ .|++||+.++....+... .......|+||+++|+.++.++
T Consensus 324 ~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~~-~~~~~p~~spdg~~l~~~~~~~ 386 (417)
T TIGR02800 324 NASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTDT-GLDESPSFAPNGRMILYATTRG 386 (417)
T ss_pred ccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEccCC-CCCCCceECCCCCEEEEEEeCC
Confidence 77889999999999988876 899999988765544433 2345678999999888877654
No 252
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.37 E-value=9.4e-11 Score=133.59 Aligned_cols=219 Identities=19% Similarity=0.240 Sum_probs=146.2
Q ss_pred eeeecCCCCeEEEEEcCCCCEEEEEeCC---CeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEE-EeCCCc--EE
Q 003840 506 NSVRASTSKVICCHFSSDGKLLATGGHD---KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLAT-SSFDKT--VR 579 (792)
Q Consensus 506 ~~l~~H~~~V~~lafspdg~~Lasgs~D---g~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Las-gs~Dg~--V~ 579 (792)
+.+..+...+.+..|+|||++|+..+.+ ..|++||+.+++... +..........+|+|||+.|+. .+.+|. |+
T Consensus 211 ~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy 289 (448)
T PRK04792 211 QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIY 289 (448)
T ss_pred eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEE
Confidence 3445566788899999999999887543 258999998876533 3322334457899999997765 456665 77
Q ss_pred EEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCc--EEEEEcCCCeeEEEe-eC-CeeEEEEecCCCEEEEE
Q 003840 580 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGE--IRYWSINNGSCTRVF-KG-GTAQMRFQPHLGRYLAA 655 (792)
Q Consensus 580 IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~--I~iwdl~~~~~~~~~-~~-~~~~v~~sp~~~~lla~ 655 (792)
+||+++ + ....+..+...+...+|+||++.++++...++. |+++|+.+++..+.. .+ ......|+|++++++..
T Consensus 290 ~~dl~t-g-~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~ 367 (448)
T PRK04792 290 VVDIAT-K-ALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIMV 367 (448)
T ss_pred EEECCC-C-CeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEEE
Confidence 778775 3 345555566667789999999988877765554 666788777655432 22 22346899999998877
Q ss_pred EcC-C--eEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC----eEEEEECCCCCCcceEEEeecCCCceEE
Q 003840 656 AAE-N--VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHS 728 (792)
Q Consensus 656 s~d-g--~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d----~I~IwDl~s~~~~~~i~~~~~~~~~i~s 728 (792)
+.+ + .|.++|+.+++...... . .......|+|||++|+..+.+ .++++++. + .....+......+..
T Consensus 368 ~~~~g~~~I~~~dl~~g~~~~lt~-~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~-G---~~~~~l~~~~g~~~~ 441 (448)
T PRK04792 368 NRTNGKFNIARQDLETGAMQVLTS-T-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSID-G---RFKARLPAGQGEVKS 441 (448)
T ss_pred EecCCceEEEEEECCCCCeEEccC-C-CCCCCceECCCCCEEEEEEecCCceEEEEEECC-C---CceEECcCCCCCcCC
Confidence 653 3 56778888876543222 2 122345899999988776543 47777763 2 333444444455667
Q ss_pred EEEeC
Q 003840 729 CVFHP 733 (792)
Q Consensus 729 i~fsp 733 (792)
.+|+|
T Consensus 442 p~Wsp 446 (448)
T PRK04792 442 PAWSP 446 (448)
T ss_pred CccCC
Confidence 77776
No 253
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.37 E-value=1.3e-10 Score=132.22 Aligned_cols=220 Identities=19% Similarity=0.213 Sum_probs=149.8
Q ss_pred eeeeecCCCCeEEEEEcCCCCEEEEEeCC---CeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEE-EeCCC--cE
Q 003840 505 ANSVRASTSKVICCHFSSDGKLLATGGHD---KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLAT-SSFDK--TV 578 (792)
Q Consensus 505 ~~~l~~H~~~V~~lafspdg~~Lasgs~D---g~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Las-gs~Dg--~V 578 (792)
...+..+...+...+|+|||+.|+..+.+ ..|++||+.+++... +....+.+...+|+|||+.|+. .+.+| .|
T Consensus 191 ~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~I 269 (430)
T PRK00178 191 AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEI 269 (430)
T ss_pred ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceE
Confidence 34566677889999999999999887644 369999999886543 3333445667899999998874 44455 58
Q ss_pred EEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCC--cEEEEEcCCCeeEEEee-C-CeeEEEEecCCCEEEE
Q 003840 579 RVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDG--EIRYWSINNGSCTRVFK-G-GTAQMRFQPHLGRYLA 654 (792)
Q Consensus 579 ~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg--~I~iwdl~~~~~~~~~~-~-~~~~v~~sp~~~~lla 654 (792)
++||+.+ + ....+..+........|+|+++.++++...+| .|++||+.+++..+... + ......|+|+++.++.
T Consensus 270 y~~d~~~-~-~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~ 347 (430)
T PRK00178 270 YVMDLAS-R-QLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTLVM 347 (430)
T ss_pred EEEECCC-C-CeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceEECCCCCEEEE
Confidence 8889886 3 34445556666778899999998887766554 57778888777544332 2 2334689999999888
Q ss_pred EEcC-C--eEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC----eEEEEECCCCCCcceEEEeecCCCceE
Q 003840 655 AAAE-N--VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFH 727 (792)
Q Consensus 655 ~s~d-g--~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d----~I~IwDl~s~~~~~~i~~~~~~~~~i~ 727 (792)
...+ + .|.+||+.+++....... .......|+|||++|+..+.+ .|+++++... ....+....+.+.
T Consensus 348 ~~~~~~~~~l~~~dl~tg~~~~lt~~--~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~----~~~~l~~~~g~~~ 421 (430)
T PRK00178 348 VHRQDGNFHVAAQDLQRGSVRILTDT--SLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGR----VRLPLPTAQGEVR 421 (430)
T ss_pred EEccCCceEEEEEECCCCCEEEccCC--CCCCCceECCCCCEEEEEEecCCceEEEEEECCCC----ceEECcCCCCCcC
Confidence 7753 2 588999988765432222 223356899999988876643 5777777432 2223333444566
Q ss_pred EEEEeC
Q 003840 728 SCVFHP 733 (792)
Q Consensus 728 si~fsp 733 (792)
..+|+|
T Consensus 422 ~p~ws~ 427 (430)
T PRK00178 422 EPSWSP 427 (430)
T ss_pred CCccCC
Confidence 666765
No 254
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.36 E-value=4.7e-11 Score=120.28 Aligned_cols=148 Identities=13% Similarity=0.281 Sum_probs=110.6
Q ss_pred EEEEECCCCCeEEEEeC----------CCcEEEEeCCCCCceeEEecc-cCCCeEEEEEcCCCCeEEEE-EeCCCcEEEE
Q 003840 558 TDVRFSPSMPRLATSSF----------DKTVRVWDADNPGYSLRTFMG-HSASVMSLDFHPNKDDLICS-CDGDGEIRYW 625 (792)
Q Consensus 558 ~~i~fspdg~~Lasgs~----------Dg~V~IWdl~s~~~~i~~~~~-h~~~V~sl~fspd~~~ll~s-gs~Dg~I~iw 625 (792)
..+.|+++|++|++-.. -+...||.++.....+..+.- ..+.|.+++|+|+++.++++ |..++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 46789999987665433 234666666544444444432 34579999999999887544 4567899999
Q ss_pred EcCCCeeEEEee-CCeeEEEEecCCCEEEEEEc---CCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeC--
Q 003840 626 SINNGSCTRVFK-GGTAQMRFQPHLGRYLAAAA---ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSE-- 699 (792)
Q Consensus 626 dl~~~~~~~~~~-~~~~~v~~sp~~~~lla~s~---dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~-- 699 (792)
|++ ++.+..+. .....+.|+|+|.++++++. .|.|.+||.++.+.+..+. | ..++.++|+|||++|++++.
T Consensus 89 d~~-~~~i~~~~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~-~~~t~~~WsPdGr~~~ta~t~~ 165 (194)
T PF08662_consen 89 DVK-GKKIFSFGTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-H-SDATDVEWSPDGRYLATATTSP 165 (194)
T ss_pred cCc-ccEeEeecCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-c-CcEEEEEEcCCCCEEEEEEecc
Confidence 997 55555554 45678999999999999875 4679999999988887765 3 34789999999999998863
Q ss_pred ----C-eEEEEECC
Q 003840 700 ----D-SVRVWTVG 708 (792)
Q Consensus 700 ----d-~I~IwDl~ 708 (792)
| .++||++.
T Consensus 166 r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 166 RLRVDNGFKIWSFQ 179 (194)
T ss_pred ceeccccEEEEEec
Confidence 4 78999984
No 255
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.34 E-value=3e-10 Score=128.55 Aligned_cols=212 Identities=12% Similarity=0.123 Sum_probs=139.8
Q ss_pred cEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCe--EEEEEeCCC--cEEEEEcCCCeeEE--EeeCCeeEEEEecCCC
Q 003840 577 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDD--LICSCDGDG--EIRYWSINNGSCTR--VFKGGTAQMRFQPHLG 650 (792)
Q Consensus 577 ~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~--ll~sgs~Dg--~I~iwdl~~~~~~~--~~~~~~~~v~~sp~~~ 650 (792)
.|.+.|.+. ...+.+......+.+-.|+|||+. ++++...+| .|++.++..++... .+.+......|+|+++
T Consensus 166 ~l~~~d~dG--~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~ 243 (428)
T PRK01029 166 ELWSVDYDG--QNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKK 243 (428)
T ss_pred eEEEEcCCC--CCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCCC
Confidence 466666653 444555556667788899999876 333555444 58888888776443 3456666789999999
Q ss_pred EEEEEEc-CC----eEEEEECCCC---eEEEEecCCCCCeEEEEEcCCCCEEEEEeC-C---eEEEEECCCCCCcceEEE
Q 003840 651 RYLAAAA-EN----VVSILDAETQ---ACRLSLQGHTKPIDSVCWDPSGELLASVSE-D---SVRVWTVGSGSEGECVHE 718 (792)
Q Consensus 651 ~lla~s~-dg----~I~i~D~~t~---~~~~~l~~h~~~V~sv~~spdg~~Las~s~-d---~I~IwDl~s~~~~~~i~~ 718 (792)
+|+.... +| .+.+|++..+ +.......+.......+|+|||+.|+..+. + .|+++++.... .....
T Consensus 244 ~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g--~~~~~ 321 (428)
T PRK01029 244 LLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEG--QSPRL 321 (428)
T ss_pred EEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccc--cceEE
Confidence 9887764 22 3444676652 333333333334567899999998887764 2 45555554211 22333
Q ss_pred eecCCCceEEEEEeCCCCEEEEEEcC---CeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEeC-C--CcEEEeC
Q 003840 719 LSCNGNKFHSCVFHPTYPSLLVIGCY---QSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASH-D--KFVKLWK 792 (792)
Q Consensus 719 ~~~~~~~i~si~fspdg~~L~sgs~d---g~I~IwDl~~~~~~~~~~h~~~V~sl~fspdg~~LaSgs~-D--G~I~IWd 792 (792)
+......+....|+|||++|+..+.+ ..|++||+.+++...+......+....|+|||++|+.... + ..|++||
T Consensus 322 lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vd 401 (428)
T PRK01029 322 LTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLIS 401 (428)
T ss_pred eccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEE
Confidence 44444566788999999999887654 3799999999988766655556788999999998875443 2 3455553
No 256
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.32 E-value=2.4e-10 Score=125.69 Aligned_cols=184 Identities=18% Similarity=0.278 Sum_probs=147.3
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCceeEEecc---CCCCEEEEEEC------C--------------CCCeEEEEeCCCcE
Q 003840 522 SDGKLLATGGHDKKAVLWHTDTLKSKTNLEE---HSSLITDVRFS------P--------------SMPRLATSSFDKTV 578 (792)
Q Consensus 522 pdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~---h~~~V~~i~fs------p--------------dg~~Lasgs~Dg~V 578 (792)
+-..|+|....||.++|||+.+++....+.. -.+..++..|. | +-..|+-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 4456999999999999999998887766652 23445555552 1 33468888899999
Q ss_pred EEEeCCCCCceeEEec--ccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeC---CeeEEEEecCCCEEE
Q 003840 579 RVWDADNPGYSLRTFM--GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYL 653 (792)
Q Consensus 579 ~IWdl~s~~~~i~~~~--~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~sp~~~~ll 653 (792)
.+|++.. ++....+. .|.+.|.++.++.+- ..|++++.|+.+.+|+...+..++.+++ ....++++||++.++
T Consensus 83 ~~ys~~~-g~it~~~st~~h~~~v~~~~~~~~~-~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~ 160 (541)
T KOG4547|consen 83 LLYSVAG-GEITAKLSTDKHYGNVNEILDAQRL-GCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILL 160 (541)
T ss_pred EEEEecC-CeEEEEEecCCCCCcceeeeccccc-CceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEE
Confidence 9999987 44444444 689999999988764 4778999999999999999999998875 456789999988777
Q ss_pred EEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCC-----CCEEEEEeCC--eEEEEECCC
Q 003840 654 AAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPS-----GELLASVSED--SVRVWTVGS 709 (792)
Q Consensus 654 a~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spd-----g~~Las~s~d--~I~IwDl~s 709 (792)
+++ +.|.+||+++.+.+.+|.+|.++|+++.|..+ |+++.++..- .|.+|-++.
T Consensus 161 ~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 161 TAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred ecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 665 68999999999999999999999999999876 7777765543 688887765
No 257
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.32 E-value=1.8e-10 Score=127.65 Aligned_cols=274 Identities=19% Similarity=0.278 Sum_probs=197.1
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC---------------ceeEEeccCCCCEEEEEECCCCCeEEEEeCC
Q 003840 511 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL---------------KSKTNLEEHSSLITDVRFSPSMPRLATSSFD 575 (792)
Q Consensus 511 H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~---------------~~~~~l~~h~~~V~~i~fspdg~~Lasgs~D 575 (792)
......|++|+....|||+|+.||.++|..+.+. ..-.++++|...|..+.|+.+...|-++..+
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~ 92 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTS 92 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCC
Confidence 3456899999999999999999999999977532 2234678999999999999999999999999
Q ss_pred CcEEEEeCCCCCceeEEe-cccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeE-EEeeC-CeeEEEEecCCCEE
Q 003840 576 KTVRVWDADNPGYSLRTF-MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT-RVFKG-GTAQMRFQPHLGRY 652 (792)
Q Consensus 576 g~V~IWdl~s~~~~i~~~-~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~-~~~~~-~~~~v~~sp~~~~l 652 (792)
|.|.||-+-++..+-..+ ...++.|.+++|+.+|.. |+....||.|.+=.++..+.- +.+++ ....+.|++|...+
T Consensus 93 GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~k-IcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~ 171 (1189)
T KOG2041|consen 93 GLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTK-ICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQA 171 (1189)
T ss_pred ceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcE-EEEEEccCCEEEEeeccceecchhcchheccceeecccHHHH
Confidence 999999998754332222 234567899999999875 457788999888776644322 22333 23468899999999
Q ss_pred EEEEcCCeEEEEECCCC-------eEEEE----ecCCCCCeEEEEEc--------CCCCEEEEEeCC-eEEEEECCCCCC
Q 003840 653 LAAAAENVVSILDAETQ-------ACRLS----LQGHTKPIDSVCWD--------PSGELLASVSED-SVRVWTVGSGSE 712 (792)
Q Consensus 653 la~s~dg~I~i~D~~t~-------~~~~~----l~~h~~~V~sv~~s--------pdg~~Las~s~d-~I~IwDl~s~~~ 712 (792)
+.+-.+|.+.+||.... .+... +......|-.++|. |+...|++|.++ .+.|..-.....
T Consensus 172 Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~ 251 (1189)
T KOG2041|consen 172 LFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPE 251 (1189)
T ss_pred HhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCC
Confidence 99999999999997643 11111 11222336666664 366788888877 777765544332
Q ss_pred cceEEEeecCCCceEEEEEeCCCCEEEEEEcCC---------eEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEe
Q 003840 713 GECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ---------SLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASAS 783 (792)
Q Consensus 713 ~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg---------~I~IwDl~~~~~~~~~~h~~~V~sl~fspdg~~LaSgs 783 (792)
+..+. .+-.+..+.|+++|..|++++.+. .|.+|..-....-++......|++++|--.|-.+|.+
T Consensus 252 Pvv~d----tgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~G~i~gtlkvpg~~It~lsWEg~gLriA~A- 326 (1189)
T KOG2041|consen 252 PVVVD----TGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPYGHIVGTLKVPGSCITGLSWEGTGLRIAIA- 326 (1189)
T ss_pred CeEEe----cccEeecceecCCCcEEEEccCcccccCccccceEEEeccchhheEEEecCCceeeeeEEcCCceEEEEE-
Confidence 22222 246788999999999999998752 5677766554444777778889999997777666655
Q ss_pred CCCcEEE
Q 003840 784 HDKFVKL 790 (792)
Q Consensus 784 ~DG~I~I 790 (792)
.|+.|++
T Consensus 327 vdsfiyf 333 (1189)
T KOG2041|consen 327 VDSFIYF 333 (1189)
T ss_pred ecceEEE
Confidence 4677664
No 258
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.31 E-value=8.2e-09 Score=112.07 Aligned_cols=247 Identities=11% Similarity=0.074 Sum_probs=154.9
Q ss_pred eeeeeeeecCCCCeEEEEEcCCCCEEEEEeC----------CCeEEEEECCCCceeEEeccC-------CCCEEEEEECC
Q 003840 502 FKEANSVRASTSKVICCHFSSDGKLLATGGH----------DKKAVLWHTDTLKSKTNLEEH-------SSLITDVRFSP 564 (792)
Q Consensus 502 ~~~~~~l~~H~~~V~~lafspdg~~Lasgs~----------Dg~I~vWdl~t~~~~~~l~~h-------~~~V~~i~fsp 564 (792)
.+.+..+..-..+-. + +||||+.|+++.. +..|.|||+.+++.+..+... ......++++|
T Consensus 37 ~~v~g~i~~G~~P~~-~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~ 114 (352)
T TIGR02658 37 GRVLGMTDGGFLPNP-V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTP 114 (352)
T ss_pred CEEEEEEEccCCCce-e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECC
Confidence 344555554333333 4 9999998887765 789999999999999888742 22344789999
Q ss_pred CCCeEEEEe-C-CCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCC-CeeE----EEee
Q 003840 565 SMPRLATSS-F-DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN-GSCT----RVFK 637 (792)
Q Consensus 565 dg~~Lasgs-~-Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~-~~~~----~~~~ 637 (792)
||++|++.. . +..|.|+|+.+ ++.+..+.-. +...-+..+.+ .+++ -+.||......+.+ ++.. ..|.
T Consensus 115 dgk~l~V~n~~p~~~V~VvD~~~-~kvv~ei~vp-~~~~vy~t~e~-~~~~--~~~Dg~~~~v~~d~~g~~~~~~~~vf~ 189 (352)
T TIGR02658 115 DNKTLLFYQFSPSPAVGVVDLEG-KAFVRMMDVP-DCYHIFPTAND-TFFM--HCRDGSLAKVGYGTKGNPKIKPTEVFH 189 (352)
T ss_pred CCCEEEEecCCCCCEEEEEECCC-CcEEEEEeCC-CCcEEEEecCC-ccEE--EeecCceEEEEecCCCceEEeeeeeec
Confidence 999998876 3 68899999998 5555555432 12222222222 1111 12244444433322 1111 1111
Q ss_pred CCe----eEEEEec-CCCEEEEEEcCCeEEEEECCCC-----eEEEEecC-------CCCCeEEEEEcCCCCEEEEEe--
Q 003840 638 GGT----AQMRFQP-HLGRYLAAAAENVVSILDAETQ-----ACRLSLQG-------HTKPIDSVCWDPSGELLASVS-- 698 (792)
Q Consensus 638 ~~~----~~v~~sp-~~~~lla~s~dg~I~i~D~~t~-----~~~~~l~~-------h~~~V~sv~~spdg~~Las~s-- 698 (792)
... ..-.|.+ ++.++++... |.|++.|+... +....+.. ..+.+.-++++++++++++..
T Consensus 190 ~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~ 268 (352)
T TIGR02658 190 PEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQ 268 (352)
T ss_pred CCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecC
Confidence 100 0014455 5555555444 99999996443 33322221 223344599999999887742
Q ss_pred --------C-CeEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCC-EEEEEE-cCCeEEEEECCCCcEEEE
Q 003840 699 --------E-DSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYP-SLLVIG-CYQSLELWNMSENKTMTL 760 (792)
Q Consensus 699 --------~-d~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~-~L~sgs-~dg~I~IwDl~~~~~~~~ 760 (792)
. +.|.++|..+. +.+..+.. +..+..++++||++ +|++.. .++.|.++|..+++.+..
T Consensus 269 ~~~~thk~~~~~V~ViD~~t~---kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~ 337 (352)
T TIGR02658 269 RAKWTHKTASRFLFVVDAKTG---KRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSS 337 (352)
T ss_pred CccccccCCCCEEEEEECCCC---eEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEee
Confidence 1 37999999776 56666554 56889999999999 777776 467899999999988743
No 259
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.29 E-value=6.5e-10 Score=119.98 Aligned_cols=272 Identities=15% Similarity=0.183 Sum_probs=189.4
Q ss_pred eecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCC-----------
Q 003840 508 VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK----------- 576 (792)
Q Consensus 508 l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg----------- 576 (792)
+..-.-++..++|||.|++|++.... -|.+|+...+..+..+. ...|..+.|+|+++||++=+..+
T Consensus 28 ~~~~~~p~~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~~l~~~~--~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~ 104 (561)
T COG5354 28 FESENWPVAYVSESPLGTYLFSEHAA-GVECWGGPSKAKLVRFR--HPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPF 104 (561)
T ss_pred ccccCcchhheeecCcchheehhhcc-ceEEccccchhheeeee--cCCceecccCcccceeeeeccCCccChhhccCCc
Confidence 33356678999999999999988655 48899988777555554 34589999999999999976543
Q ss_pred ----cEEEEeCCCCCceeEEecccCCC--eE-EEEEcCCCCeEEEEEeCCCcEEEEEcCCCee----EEEee-CCeeEEE
Q 003840 577 ----TVRVWDADNPGYSLRTFMGHSAS--VM-SLDFHPNKDDLICSCDGDGEIRYWSINNGSC----TRVFK-GGTAQMR 644 (792)
Q Consensus 577 ----~V~IWdl~s~~~~i~~~~~h~~~--V~-sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~----~~~~~-~~~~~v~ 644 (792)
.+.|||+.+ +..+..+.....+ .+ -+.|+.++.+++-. ....++|+++ ++.. .+.++ .++....
T Consensus 105 ~~~n~~~vwd~~s-g~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv--v~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFs 180 (561)
T COG5354 105 TSKNNVFVWDIAS-GMIVFSFNGISQPYLGWPVLKFSIDDKYVARV--VGSSLYIHEI-TDNIEEHPFKNLRPVGILDFS 180 (561)
T ss_pred cccCceeEEeccC-ceeEeeccccCCcccccceeeeeecchhhhhh--ccCeEEEEec-CCccccCchhhccccceeeEE
Confidence 499999998 7778887766655 45 67788776644333 3457999997 3332 22233 4667788
Q ss_pred EecCCCE--EEEE-----EcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEe------------CCeEEEE
Q 003840 645 FQPHLGR--YLAA-----AAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVS------------EDSVRVW 705 (792)
Q Consensus 645 ~sp~~~~--lla~-----s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s------------~d~I~Iw 705 (792)
|+|.++. |++- ...+.+++|.+.....+.+..-....-..+.|.+.|++|++-. +..++|+
T Consensus 181 isP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~ 260 (561)
T COG5354 181 ISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLL 260 (561)
T ss_pred ecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEE
Confidence 8887432 3332 2367899999887766554333333345688999999776431 1257888
Q ss_pred ECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEE--cCCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEe
Q 003840 706 TVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIG--CYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASAS 783 (792)
Q Consensus 706 Dl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs--~dg~I~IwDl~~~~~~~~~~h~~~V~sl~fspdg~~LaSgs 783 (792)
++... .+.......++|..++|.|+++.+++++ ..-.+.++|++.+ +.+......=+.+.|+|.+++++.++
T Consensus 261 ~~~e~----~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N--l~~~~Pe~~rNT~~fsp~~r~il~ag 334 (561)
T COG5354 261 RITER----SIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN--LRFYFPEQKRNTIFFSPHERYILFAG 334 (561)
T ss_pred eeccc----ccceeccccccceeeeecccCCceeEEecccccceeecccccc--eEEecCCcccccccccCcccEEEEec
Confidence 88632 2222224578999999999998887776 3458999999888 44445555566788899999888877
Q ss_pred CC---CcEEEeC
Q 003840 784 HD---KFVKLWK 792 (792)
Q Consensus 784 ~D---G~I~IWd 792 (792)
-| |.|.|||
T Consensus 335 F~nl~gni~i~~ 346 (561)
T COG5354 335 FDNLQGNIEIFD 346 (561)
T ss_pred CCccccceEEec
Confidence 65 6677775
No 260
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.27 E-value=2.5e-09 Score=119.47 Aligned_cols=253 Identities=13% Similarity=0.063 Sum_probs=161.0
Q ss_pred CCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEecccCCCe--
Q 003840 523 DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASV-- 600 (792)
Q Consensus 523 dg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V-- 600 (792)
++..+++++.+|.|+.||.++|+.+............... .+..++.++.+|.|+.||.++ ++.+..+......+
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~a~d~~t-G~~~W~~~~~~~~~~~ 180 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPLV--ANGLVVVRTNDGRLTALDAAT-GERLWTYSRVTPALTL 180 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCEE--ECCEEEEECCCCeEEEEEcCC-CceeeEEccCCCceee
Confidence 4668888889999999999999988766533221111111 345777888899999999987 44444443222111
Q ss_pred ---EEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCCe----e------EEE--EecCCCEEEEEEcCCeEEEEE
Q 003840 601 ---MSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGT----A------QMR--FQPHLGRYLAAAAENVVSILD 665 (792)
Q Consensus 601 ---~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~----~------~v~--~sp~~~~lla~s~dg~I~i~D 665 (792)
.+..+. + . .++.+..++.+..+|+++++.+....... . .+. ....++.+++++.++.++.||
T Consensus 181 ~~~~sp~~~-~-~-~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d 257 (377)
T TIGR03300 181 RGSASPVIA-D-G-GVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALD 257 (377)
T ss_pred cCCCCCEEE-C-C-EEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEE
Confidence 111222 2 2 45577888999999999998765432110 0 000 111357888888999999999
Q ss_pred CCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeec-CCCceEEEEEeCCCCEEEEEEc
Q 003840 666 AETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSC-NGNKFHSCVFHPTYPSLLVIGC 743 (792)
Q Consensus 666 ~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~-~~~~i~si~fspdg~~L~sgs~ 743 (792)
.++++.+...... . ..... .++..|++++.+ .|+.+|..++ +.+..... ......+... .+.+|++++.
T Consensus 258 ~~tG~~~W~~~~~-~-~~~p~--~~~~~vyv~~~~G~l~~~d~~tG---~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~ 328 (377)
T TIGR03300 258 LRSGRVLWKRDAS-S-YQGPA--VDDNRLYVTDADGVVVALDRRSG---SELWKNDELKYRQLTAPAV--VGGYLVVGDF 328 (377)
T ss_pred CCCCcEEEeeccC-C-ccCce--EeCCEEEEECCCCeEEEEECCCC---cEEEccccccCCccccCEE--ECCEEEEEeC
Confidence 9999888766521 1 12222 245566666666 9999999877 33333321 1112222222 4668999999
Q ss_pred CCeEEEEECCCCcEE-EEcccCCCe-EEEEEeCCCCEEEEEeCCCcEEEeC
Q 003840 744 YQSLELWNMSENKTM-TLTAHEGLI-AALAVSTETGYVASASHDKFVKLWK 792 (792)
Q Consensus 744 dg~I~IwDl~~~~~~-~~~~h~~~V-~sl~fspdg~~LaSgs~DG~I~IWd 792 (792)
+|.|++||..+++.+ .+..+...+ .+..+. ++ .|+.++.||.|+.|.
T Consensus 329 ~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~-~~-~l~v~~~dG~l~~~~ 377 (377)
T TIGR03300 329 EGYLHWLSREDGSFVARLKTDGSGIASPPVVV-GD-GLLVQTRDGDLYAFR 377 (377)
T ss_pred CCEEEEEECCCCCEEEEEEcCCCccccCCEEE-CC-EEEEEeCCceEEEeC
Confidence 999999999999988 444444333 333333 33 577889999998874
No 261
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.26 E-value=3.5e-11 Score=133.79 Aligned_cols=278 Identities=15% Similarity=0.294 Sum_probs=194.0
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC-CceeEEecc-CCCCEEEEEECCCC--CeEEEEeCCCcEEEEeCCCCC
Q 003840 512 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDT-LKSKTNLEE-HSSLITDVRFSPSM--PRLATSSFDKTVRVWDADNPG 587 (792)
Q Consensus 512 ~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t-~~~~~~l~~-h~~~V~~i~fspdg--~~Lasgs~Dg~V~IWdl~s~~ 587 (792)
.+.+.++.++|.|+-+|.++.-|. .+.|++. +....-+.. ..-.|-++.|++.. .+-++......-.||++....
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~gl-~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss 102 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQGL-YIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSS 102 (1081)
T ss_pred cCcccceeeccccchhhhhhhcCe-EEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCC
Confidence 355888999999999999987764 4556654 333333321 12346778888743 355555555667889987432
Q ss_pred --ceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCee-EEE---eeCCeeEEEEecCCCEEEEEEcCCeE
Q 003840 588 --YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC-TRV---FKGGTAQMRFQPHLGRYLAAAAENVV 661 (792)
Q Consensus 588 --~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~-~~~---~~~~~~~v~~sp~~~~lla~s~dg~I 661 (792)
..-..+.+|...|+++.|++....++++|+.|-.|..||+++... +.. .......+.|+.....+++.+..+.|
T Consensus 103 ~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i 182 (1081)
T KOG0309|consen 103 SNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDI 182 (1081)
T ss_pred ccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCce
Confidence 344566789999999999999999999999999999999997643 222 34567789999999999999999999
Q ss_pred EEEECCCC-eEEEEecCCCCCeEEEEEcCC-CCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEE
Q 003840 662 SILDAETQ-ACRLSLQGHTKPIDSVCWDPS-GELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSL 738 (792)
Q Consensus 662 ~i~D~~t~-~~~~~l~~h~~~V~sv~~spd-g~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L 738 (792)
.+||++.+ .++..+++|...|+.++|..- ...+.+++.| +|++||.....+ .-........+|+.-.+.|-|+-.
T Consensus 183 ~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~--e~~~~vtt~~piw~~r~~Pfg~g~ 260 (1081)
T KOG0309|consen 183 FVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTT--ESKRTVTTNFPIWRGRYLPFGEGY 260 (1081)
T ss_pred EEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccccccc--ccceeccccCcceeccccccCcee
Confidence 99999987 788889999999999998763 2356666666 999999975422 112222334566666777755432
Q ss_pred EEE--EcCCeEEE---------EECCCCc-EE-EEcccCCCeEEEEEeCCCC----------EEEEEeCCCcEEEeC
Q 003840 739 LVI--GCYQSLEL---------WNMSENK-TM-TLTAHEGLIAALAVSTETG----------YVASASHDKFVKLWK 792 (792)
Q Consensus 739 ~sg--s~dg~I~I---------wDl~~~~-~~-~~~~h~~~V~sl~fspdg~----------~LaSgs~DG~I~IWd 792 (792)
++- -.+..|.+ |+..++. .+ ++.+|.+.|...-|-..+. .|+|-+.|..+++|.
T Consensus 261 ~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWp 337 (1081)
T KOG0309|consen 261 CIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWP 337 (1081)
T ss_pred EeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeee
Confidence 221 11223333 3333322 22 7889999888776643211 599999999999993
No 262
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.25 E-value=3.5e-10 Score=114.62 Aligned_cols=241 Identities=19% Similarity=0.216 Sum_probs=165.2
Q ss_pred CCCCeEEEEEcC---CCC-EEEEEeCCCeEEEEECCCCceeEEeccC------CCCEEEEEECCCCCeEEEEeCCCcEEE
Q 003840 511 STSKVICCHFSS---DGK-LLATGGHDKKAVLWHTDTLKSKTNLEEH------SSLITDVRFSPSMPRLATSSFDKTVRV 580 (792)
Q Consensus 511 H~~~V~~lafsp---dg~-~Lasgs~Dg~I~vWdl~t~~~~~~l~~h------~~~V~~i~fspdg~~Lasgs~Dg~V~I 580 (792)
-+..+..+.|.. +|. .|+-+..+|.|.+|.....+....+.+- .....++.|++.+..++++-.+|.+.+
T Consensus 68 dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~ 147 (339)
T KOG0280|consen 68 DTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISG 147 (339)
T ss_pred cccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEE
Confidence 344566666653 444 5666777899999987655444444432 113467889999999999999999985
Q ss_pred EeCCC-CCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCCeeEEEEecCCCEEEEEEcCC
Q 003840 581 WDADN-PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAEN 659 (792)
Q Consensus 581 Wdl~s-~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~lla~s~dg 659 (792)
-+... .-+.+.+++.|..+++...|+....+++++|++|+.+..||++..+ ..
T Consensus 148 v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~-~~------------------------- 201 (339)
T KOG0280|consen 148 VYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPK-TF------------------------- 201 (339)
T ss_pred EecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCc-ce-------------------------
Confidence 55443 1233457889999999999998888999999999999999998322 11
Q ss_pred eEEEEECCCCeEEEEecCCCCCeEEEEEcC-CCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCC-
Q 003840 660 VVSILDAETQACRLSLQGHTKPIDSVCWDP-SGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYP- 736 (792)
Q Consensus 660 ~I~i~D~~t~~~~~~l~~h~~~V~sv~~sp-dg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~- 736 (792)
+|. ..+-|...|.+|.-+| .+.+|++|+.| .|++||.++.. +++..-. ..+.|+.+.++|.-.
T Consensus 202 ---i~~--------n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~--kPl~~~~-v~GGVWRi~~~p~~~~ 267 (339)
T KOG0280|consen 202 ---IWH--------NSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMG--KPLFKAK-VGGGVWRIKHHPEIFH 267 (339)
T ss_pred ---eee--------cceeeecceEEEecCCCCCceEEEeccccceeeeehhccc--CccccCc-cccceEEEEecchhhh
Confidence 010 0123677788887776 57799999999 99999998543 3333222 237899999999543
Q ss_pred EEEEEEcCCeEEEEECCCCcEE------EEcccCCCeEEEEEeCCCCEEEEEeC-CCcEE-Ee
Q 003840 737 SLLVIGCYQSLELWNMSENKTM------TLTAHEGLIAALAVSTETGYVASASH-DKFVK-LW 791 (792)
Q Consensus 737 ~L~sgs~dg~I~IwDl~~~~~~------~~~~h~~~V~sl~fspdg~~LaSgs~-DG~I~-IW 791 (792)
.+++++..+..+|.+...+... ....|.+.+..-.|.....+||||+- |+.|+ +|
T Consensus 268 ~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~W 330 (339)
T KOG0280|consen 268 RLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLW 330 (339)
T ss_pred HHHHHHHhcCceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeee
Confidence 3455555556777766554322 44567887888888555567888764 77755 77
No 263
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.25 E-value=3.9e-11 Score=129.28 Aligned_cols=278 Identities=18% Similarity=0.238 Sum_probs=191.0
Q ss_pred eeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC-------CceeEEeccCCCCEEEEEECCCCCeEEEEeCCC
Q 003840 504 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT-------LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK 576 (792)
Q Consensus 504 ~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t-------~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg 576 (792)
.+..+.||..+|..++--.+.+.+++++.|++|++|.++. ..+..++..|...|.++.|..+.++++++ ||
T Consensus 727 rL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~ 804 (1034)
T KOG4190|consen 727 RLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DG 804 (1034)
T ss_pred eeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cC
Confidence 4456789999999999888888999999999999999852 34677888999999999999998877765 78
Q ss_pred cEEEEeCCCCCceeEEe-----cccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee--------CCeeEE
Q 003840 577 TVRVWDADNPGYSLRTF-----MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK--------GGTAQM 643 (792)
Q Consensus 577 ~V~IWdl~s~~~~i~~~-----~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~--------~~~~~v 643 (792)
.|.+||.-- +..+... .+..+.|.|+. +-+...+++.|+...+|+++|.+..+.+..++ .-+.++
T Consensus 805 giHlWDPFi-gr~Laq~~dapk~~a~~~ikcl~-nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~i 882 (1034)
T KOG4190|consen 805 GIHLWDPFI-GRLLAQMEDAPKEGAGGNIKCLE-NVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAI 882 (1034)
T ss_pred cceeecccc-cchhHhhhcCcccCCCceeEecc-cCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEE
Confidence 899999865 3322211 11223344432 11334455556889999999999987766553 235678
Q ss_pred EEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEE-EECCCCCCcceEEEeec
Q 003840 644 RFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRV-WTVGSGSEGECVHELSC 721 (792)
Q Consensus 644 ~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~I-wDl~s~~~~~~i~~~~~ 721 (792)
++.+.|++++++-++|.|.+.|.++++++..+...+.....++- |....|+....| ++.| |....+ ......+.
T Consensus 883 aVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqlaa-psdq~L~~saldHslaVnWhaldg---imh~q~kp 958 (1034)
T KOG4190|consen 883 AVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLAA-PSDQALAQSALDHSLAVNWHALDG---IMHLQDKP 958 (1034)
T ss_pred EeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhcC-chhHHHHhhcccceeEeeehhcCC---eeeeccCC
Confidence 89999999999999999999999999999887765555554443 555667766666 7777 876543 11111111
Q ss_pred CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC-C------cEEEEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEe
Q 003840 722 NGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSE-N------KTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLW 791 (792)
Q Consensus 722 ~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~-~------~~~~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IW 791 (792)
...+.. -+-.-|..+++......+.||--.. . ..+......+..++++.-|-+.-++.|++.|.|.+.
T Consensus 959 ppepah--flqsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~IaLl 1033 (1034)
T KOG4190|consen 959 PPEPAH--FLQSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGAIALL 1033 (1034)
T ss_pred CCcchh--hhhccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhccCCCCceeec
Confidence 111110 1122355677777777778874221 1 112233456778888888877777788889988763
No 264
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.24 E-value=7.8e-09 Score=115.48 Aligned_cols=255 Identities=16% Similarity=0.125 Sum_probs=160.2
Q ss_pred CCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEE
Q 003840 523 DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMS 602 (792)
Q Consensus 523 dg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~s 602 (792)
.+..+++++.+|.|+.||..+|+.+..+.........+.. ++..+++++.+|.|+.||..+ ++.+...... ..+.+
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~t-G~~~W~~~~~-~~~~~ 139 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAED-GKELWRAKLS-SEVLS 139 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCC-CcEeeeeccC-ceeec
Confidence 3568888989999999999999988776644332222322 466888899999999999987 4544443322 22222
Q ss_pred EEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCCeeEEEE------ecCCCEEEEEEcCCeEEEEECCCCeEEEEec
Q 003840 603 LDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRF------QPHLGRYLAAAAENVVSILDAETQACRLSLQ 676 (792)
Q Consensus 603 l~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~------sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~ 676 (792)
..... ++ .++.++.+|.|+.||.++++.+..++.....+.+ .-.++.++++..++.+..+|.++++.+....
T Consensus 140 ~p~v~-~~-~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~~~~~g~v~ald~~tG~~~W~~~ 217 (377)
T TIGR03300 140 PPLVA-NG-LVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLVGFAGGKLVALDLQTGQPLWEQR 217 (377)
T ss_pred CCEEE-CC-EEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEEECCCCEEEEEEccCCCEeeeec
Confidence 11111 23 3446777999999999999988776543211100 0123577888888999999999998776543
Q ss_pred CCCC----C---eEEEEEcC--CCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCe
Q 003840 677 GHTK----P---IDSVCWDP--SGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQS 746 (792)
Q Consensus 677 ~h~~----~---V~sv~~sp--dg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~ 746 (792)
.... . +..+.-+| .+.++++++.+ .++.||..++ +.+..... ......+ .++..|++++.+|.
T Consensus 218 ~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG---~~~W~~~~--~~~~~p~--~~~~~vyv~~~~G~ 290 (377)
T TIGR03300 218 VALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSG---RVLWKRDA--SSYQGPA--VDDNRLYVTDADGV 290 (377)
T ss_pred cccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCC---cEEEeecc--CCccCce--EeCCEEEEECCCCe
Confidence 2100 0 00010011 24456666656 9999999877 33333321 1111222 35678888899999
Q ss_pred EEEEECCCCcEEEEc-cc-CCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003840 747 LELWNMSENKTMTLT-AH-EGLIAALAVSTETGYVASASHDKFVKLWK 792 (792)
Q Consensus 747 I~IwDl~~~~~~~~~-~h-~~~V~sl~fspdg~~LaSgs~DG~I~IWd 792 (792)
|+.+|..+++.+... .. ...+.+..+ .+.+|++++.||.|++||
T Consensus 291 l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d 336 (377)
T TIGR03300 291 VVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLS 336 (377)
T ss_pred EEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEE
Confidence 999999999876322 21 122223233 356888899999998875
No 265
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.24 E-value=2.3e-08 Score=104.92 Aligned_cols=259 Identities=11% Similarity=0.116 Sum_probs=177.9
Q ss_pred CCeEEEEECCCCcee---EEeccCCCCEEEEEECCCCCeEEEEeC---CCcEEEEeCCCCCceeEEe---cccCCCeEEE
Q 003840 533 DKKAVLWHTDTLKSK---TNLEEHSSLITDVRFSPSMPRLATSSF---DKTVRVWDADNPGYSLRTF---MGHSASVMSL 603 (792)
Q Consensus 533 Dg~I~vWdl~t~~~~---~~l~~h~~~V~~i~fspdg~~Lasgs~---Dg~V~IWdl~s~~~~i~~~---~~h~~~V~sl 603 (792)
+.-|++|++++..-. ..+-.+...++-|+|+++.++|+++.. +|.|..|.++.....+..+ ......-+.+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 466999998743221 122356778899999999999988855 4778888887532222222 1222334789
Q ss_pred EEcCCCCeEEEEEeCCCcEEEEEcCC-CeeEEE---e------------eCCeeEEEEecCCCEEEEEEc-CCeEEEEEC
Q 003840 604 DFHPNKDDLICSCDGDGEIRYWSINN-GSCTRV---F------------KGGTAQMRFQPHLGRYLAAAA-ENVVSILDA 666 (792)
Q Consensus 604 ~fspd~~~ll~sgs~Dg~I~iwdl~~-~~~~~~---~------------~~~~~~v~~sp~~~~lla~s~-dg~I~i~D~ 666 (792)
++++++..++++-...|.|.++-+.. |..... + ..+.....+.|++++++++.- ...|.+|++
T Consensus 95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~ 174 (346)
T COG2706 95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDL 174 (346)
T ss_pred EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEc
Confidence 99999998887777889999999965 332211 1 123566889999988888775 568999999
Q ss_pred CCCeEEEEec---CCCCCeEEEEEcCCCCEEEEEeCC--eEEEEECCCC-CCcceEEEeec------CCCceEEEEEeCC
Q 003840 667 ETQACRLSLQ---GHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSG-SEGECVHELSC------NGNKFHSCVFHPT 734 (792)
Q Consensus 667 ~t~~~~~~l~---~h~~~V~sv~~spdg~~Las~s~d--~I~IwDl~s~-~~~~~i~~~~~------~~~~i~si~fspd 734 (792)
..++....-. .....-+.|.|+|++++..+.++= +|.+|.+... .+.+.+..+.. ...+...|.+++|
T Consensus 175 ~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~d 254 (346)
T COG2706 175 DDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPD 254 (346)
T ss_pred ccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCC
Confidence 9775433211 233456789999999988877753 9999999764 22333333222 2345778899999
Q ss_pred CCEEEEEEcC-CeEEEEECCC--CcEE---EEcccCCCeEEEEEeCCCCEEEEEeCC-CcEEEe
Q 003840 735 YPSLLVIGCY-QSLELWNMSE--NKTM---TLTAHEGLIAALAVSTETGYVASASHD-KFVKLW 791 (792)
Q Consensus 735 g~~L~sgs~d-g~I~IwDl~~--~~~~---~~~~h~~~V~sl~fspdg~~LaSgs~D-G~I~IW 791 (792)
|++|+++... ..|.+|.+.. +++. ....+....+.+.|++.+++|++++.| ..|.+|
T Consensus 255 GrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf 318 (346)
T COG2706 255 GRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVF 318 (346)
T ss_pred CCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEE
Confidence 9999988654 3788887654 3332 223344557899999999999998875 456665
No 266
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.23 E-value=3.2e-10 Score=124.67 Aligned_cols=205 Identities=16% Similarity=0.220 Sum_probs=146.6
Q ss_pred CCCCeEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCCeeEE
Q 003840 564 PSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQM 643 (792)
Q Consensus 564 pdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v 643 (792)
+...+||....||.++|||..+ +.....|. |. +..+..++...|.+.-+........-....
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~-~~~~~e~~------------p~-----~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~ 64 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAK-NQLQQEFA------------PI-----ASLSGTCTYTKWGLSADYSPMKWLSLEKAK 64 (541)
T ss_pred chhheEeecCCCCeEEEEEccC-ceeeeeec------------cc-----hhccCcceeEEEEEEeccchHHHHhHHHHh
Confidence 3456899999999999999987 33333222 11 011112223333321111000000000111
Q ss_pred EEecCCCEEEEEEcCCeEEEEECCCCeEEEEec--CCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEee
Q 003840 644 RFQPHLGRYLAAAAENVVSILDAETQACRLSLQ--GHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELS 720 (792)
Q Consensus 644 ~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~--~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~ 720 (792)
..+.+...++.|...|.|.+|++..++....+. .|.+.|.++.++.+-..|.+++.| .+..|+.... ..++.+.
T Consensus 65 ~~s~~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~---~~~~~~~ 141 (541)
T KOG4547|consen 65 KASLDTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEK---VIIRIWK 141 (541)
T ss_pred hccCCceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccc---eeeeeec
Confidence 123344567778889999999999998888776 499999999999999999999999 9999999765 7788888
Q ss_pred cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCC-----CCEEEEE-eCCCcEEEe
Q 003840 721 CNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTE-----TGYVASA-SHDKFVKLW 791 (792)
Q Consensus 721 ~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~~~~h~~~V~sl~fspd-----g~~LaSg-s~DG~I~IW 791 (792)
+....+.+++++||++.+++++ +.|++||+++++.+ .+.+|.++|+++.|..+ |.+|+++ ..+..|.+|
T Consensus 142 ~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w 217 (541)
T KOG4547|consen 142 EQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVW 217 (541)
T ss_pred cCCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEE
Confidence 8888999999999999998887 58999999999988 88999999999999877 6666554 345566676
No 267
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.20 E-value=2.4e-08 Score=121.98 Aligned_cols=279 Identities=15% Similarity=0.212 Sum_probs=184.1
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCeEEEE----ECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCC
Q 003840 510 ASTSKVICCHFSSDGKLLATGGHDKKAVLW----HTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN 585 (792)
Q Consensus 510 ~H~~~V~~lafspdg~~Lasgs~Dg~I~vW----dl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s 585 (792)
...+.|.++.|-+|...|+.+..+|.|.++ +..+.. +.....-...|.+++||||+..|+..+.+++|.+.+.+=
T Consensus 73 ~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~-~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~f 151 (928)
T PF04762_consen 73 DPNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDE-IEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDF 151 (928)
T ss_pred CCCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCce-eEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccc
Confidence 446789999999999999999999999999 444322 223334567899999999999999999999888764320
Q ss_pred ------------CC----------ceeEEecc------------------------cCCCeEEEEEcCCCCeEEEEEe--
Q 003840 586 ------------PG----------YSLRTFMG------------------------HSASVMSLDFHPNKDDLICSCD-- 617 (792)
Q Consensus 586 ------------~~----------~~i~~~~~------------------------h~~~V~sl~fspd~~~ll~sgs-- 617 (792)
.+ +.-..|.| ....-..|+|-.||.+++++.-
T Consensus 152 d~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~ 231 (928)
T PF04762_consen 152 DPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEP 231 (928)
T ss_pred eEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEc
Confidence 00 00000100 2334567899999986665543
Q ss_pred CC---CcEEEEEcCCCeeEEEee---CCeeEEEEecCCCEEEEEEc---CCeEEEEECCCCeEEEE----ecCCCCCeEE
Q 003840 618 GD---GEIRYWSINNGSCTRVFK---GGTAQMRFQPHLGRYLAAAA---ENVVSILDAETQACRLS----LQGHTKPIDS 684 (792)
Q Consensus 618 ~D---g~I~iwdl~~~~~~~~~~---~~~~~v~~sp~~~~lla~s~---dg~I~i~D~~t~~~~~~----l~~h~~~V~s 684 (792)
.+ ..||||+-+ |....+-+ +-...++|.|.|+.|++.-. ...|.+|.- +|-.... +......|..
T Consensus 232 ~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfEr-NGLrhgeF~l~~~~~~~~v~~ 309 (928)
T PF04762_consen 232 ETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFER-NGLRHGEFTLRFDPEEEKVIE 309 (928)
T ss_pred CCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEec-CCcEeeeEecCCCCCCceeeE
Confidence 22 579999876 55444332 33456899999988877665 235555553 3322222 2234567999
Q ss_pred EEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEeec-CCCceEEEEEeCCCC-EEEEEEcCCeEEEEEC----CCC---
Q 003840 685 VCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSC-NGNKFHSCVFHPTYP-SLLVIGCYQSLELWNM----SEN--- 755 (792)
Q Consensus 685 v~~spdg~~Las~s~d~I~IwDl~s~~~~~~i~~~~~-~~~~i~si~fspdg~-~L~sgs~dg~I~IwDl----~~~--- 755 (792)
+.|+.|+.+||....|.|.+|...+..- -...++.. ....+..+.|+|... .|.+.+.+|.+.++++ ..+
T Consensus 310 l~Wn~ds~iLAv~~~~~vqLWt~~NYHW-YLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~ 388 (928)
T PF04762_consen 310 LAWNSDSEILAVWLEDRVQLWTRSNYHW-YLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGS 388 (928)
T ss_pred EEECCCCCEEEEEecCCceEEEeeCCEE-EEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCC
Confidence 9999999999999888999999876521 22222322 223345589998654 4666666565544432 211
Q ss_pred -------------cEE----------------EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003840 756 -------------KTM----------------TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 792 (792)
Q Consensus 756 -------------~~~----------------~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd 792 (792)
..+ ........|.+++|++++..+|+-..||.|.+|+
T Consensus 389 ~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~ 454 (928)
T PF04762_consen 389 SPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYE 454 (928)
T ss_pred CccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEE
Confidence 111 0111356899999999998899999999999884
No 268
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.19 E-value=1.2e-09 Score=110.66 Aligned_cols=196 Identities=21% Similarity=0.235 Sum_probs=145.7
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeE--EeccCCCCEEEEEECC-CCCeEEEEeCCCcEEEEeCCCCCcee
Q 003840 514 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKT--NLEEHSSLITDVRFSP-SMPRLATSSFDKTVRVWDADNPGYSL 590 (792)
Q Consensus 514 ~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~--~l~~h~~~V~~i~fsp-dg~~Lasgs~Dg~V~IWdl~s~~~~i 590 (792)
...++.|++.+.-++++..+|.+.+-+........ .++.|...++...|+. +.+++++|+.|+.+..||++.++..+
T Consensus 123 ~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i 202 (339)
T KOG0280|consen 123 EALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFI 202 (339)
T ss_pred eeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCccee
Confidence 35678899999999999999999976666555444 7889999999999987 44689999999999999999655554
Q ss_pred EE-ecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCC-CeeEEE--eeCCeeEEEEecCCC-EEEEEEcCCeEEEEE
Q 003840 591 RT-FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN-GSCTRV--FKGGTAQMRFQPHLG-RYLAAAAENVVSILD 665 (792)
Q Consensus 591 ~~-~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~-~~~~~~--~~~~~~~v~~sp~~~-~lla~s~dg~I~i~D 665 (792)
.. ...|...|.+|.-+|....+|++|+.|-.|++||.+. ++.+.. ..+++..+..+|... .+++++.-+..+|.+
T Consensus 203 ~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~ 282 (339)
T KOG0280|consen 203 WHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNGAKILD 282 (339)
T ss_pred eecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhcCceEEE
Confidence 44 5679999999999998889999999999999999984 555543 346788888887653 455666666666666
Q ss_pred CCCC--e---EEEEecCCCCCeEEEEEcCCCCEEEEEeC-C-eEE-EEECCC
Q 003840 666 AETQ--A---CRLSLQGHTKPIDSVCWDPSGELLASVSE-D-SVR-VWTVGS 709 (792)
Q Consensus 666 ~~t~--~---~~~~l~~h~~~V~sv~~spdg~~Las~s~-d-~I~-IwDl~s 709 (792)
.... + .....+.|.+-+..-.|.....+|++|+. | .++ +|-..+
T Consensus 283 ~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t 334 (339)
T KOG0280|consen 283 SSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHIT 334 (339)
T ss_pred ecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeecc
Confidence 6554 2 33445556666666666555557888763 3 433 665444
No 269
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.18 E-value=1.2e-08 Score=109.20 Aligned_cols=145 Identities=19% Similarity=0.197 Sum_probs=115.8
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCC-eEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCc
Q 003840 510 ASTSKVICCHFSSDGKLLATGGHDK-KAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGY 588 (792)
Q Consensus 510 ~H~~~V~~lafspdg~~Lasgs~Dg-~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~ 588 (792)
+|.+.|.-..+..+++-++.|..|| .|-|||.++++. +.+...-+.|.++..+++|++++++.....|.++|+++ +.
T Consensus 357 ~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~-kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididn-gn 434 (668)
T COG4946 357 GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV-KRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDN-GN 434 (668)
T ss_pred CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceE-EEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecC-CC
Confidence 7788899999999999999999999 899999988764 44556678899999999999999999999999999998 44
Q ss_pred eeEEecccCCCeEEEEEcCCCCeEEEEEeCCC----cEEEEEcCCCeeEEEee--CCeeEEEEecCCCEEEEEEc
Q 003840 589 SLRTFMGHSASVMSLDFHPNKDDLICSCDGDG----EIRYWSINNGSCTRVFK--GGTAQMRFQPHLGRYLAAAA 657 (792)
Q Consensus 589 ~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg----~I~iwdl~~~~~~~~~~--~~~~~v~~sp~~~~lla~s~ 657 (792)
....-....+-|+.++|+|++..+ |-+--+| .|+++|+..++...... ....+-+|.|++++|..-+.
T Consensus 435 v~~idkS~~~lItdf~~~~nsr~i-AYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs~ 508 (668)
T COG4946 435 VRLIDKSEYGLITDFDWHPNSRWI-AYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLSA 508 (668)
T ss_pred eeEecccccceeEEEEEcCCceeE-EEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEEec
Confidence 444444566789999999997654 4444444 68999999988776554 34455789999988876554
No 270
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.18 E-value=2.3e-08 Score=106.99 Aligned_cols=281 Identities=15% Similarity=0.157 Sum_probs=183.2
Q ss_pred CCcceeccCCc-ceeeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECC-CCceeEEeccCCCC--EEEEEECCC
Q 003840 490 GGRGMDVSQGF-SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTD-TLKSKTNLEEHSSL--ITDVRFSPS 565 (792)
Q Consensus 490 ~~~~~d~~~~~-~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~-t~~~~~~l~~h~~~--V~~i~fspd 565 (792)
.+++|-...+. .|+.+..+.+|-+...-+ .++..+....||.=.||.++ +|+-++ .|+.- -.+-..+.|
T Consensus 205 rGklWis~d~g~tFeK~vdl~~~vS~PmIV----~~RvYFlsD~eG~GnlYSvdldGkDlr---rHTnFtdYY~R~~nsD 277 (668)
T COG4946 205 RGKLWISSDGGKTFEKFVDLDGNVSSPMIV----GERVYFLSDHEGVGNLYSVDLDGKDLR---RHTNFTDYYPRNANSD 277 (668)
T ss_pred cceEEEEecCCcceeeeeecCCCcCCceEE----cceEEEEecccCccceEEeccCCchhh---hcCCchhccccccCCC
Confidence 34566665554 788888887775433222 12333334456554555443 222222 22211 122233557
Q ss_pred CCeEEEEeCCCcEEEEeCCCCCceeEEec-----ccC-----CCeEEEE-EcCCCCeEEEEEeCCCcEEEEEcCCCeeEE
Q 003840 566 MPRLATSSFDKTVRVWDADNPGYSLRTFM-----GHS-----ASVMSLD-FHPNKDDLICSCDGDGEIRYWSINNGSCTR 634 (792)
Q Consensus 566 g~~Lasgs~Dg~V~IWdl~s~~~~i~~~~-----~h~-----~~V~sl~-fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~ 634 (792)
|+.|+.. ..|.|++||.+++......+. ... .+..-+. |++-...+++..+ .|...|.+...+-.+.
T Consensus 278 GkrIvFq-~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VS-RGkaFi~~~~~~~~iq 355 (668)
T COG4946 278 GKRIVFQ-NAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVS-RGKAFIMRPWDGYSIQ 355 (668)
T ss_pred CcEEEEe-cCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEe-cCcEEEECCCCCeeEE
Confidence 8877665 356699999987432211111 000 0111111 3333344565555 6777787777666655
Q ss_pred Ee-eCCeeEEEEecCCCEEEEEEcCC-eEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCC
Q 003840 635 VF-KGGTAQMRFQPHLGRYLAAAAEN-VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGS 711 (792)
Q Consensus 635 ~~-~~~~~~v~~sp~~~~lla~s~dg-~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~ 711 (792)
.- ++.+....+..+...++.+..|| .|-|||.++++... +...-+.|.++..+++|++++++.+. .|.++|+.+++
T Consensus 356 v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr-~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngn 434 (668)
T COG4946 356 VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKR-IEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGN 434 (668)
T ss_pred cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEE-eeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCC
Confidence 43 45667777888888889999988 99999999887554 44456789999999999999988888 99999998873
Q ss_pred CcceEEEeecCCCceEEEEEeCCCCEEEEEEcCC----eEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEe
Q 003840 712 EGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ----SLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASAS 783 (792)
Q Consensus 712 ~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg----~I~IwDl~~~~~~~~~~h~~~V~sl~fspdg~~LaSgs 783 (792)
....-....+-|+.+.|||++++||.+--+| .|++||+.+++........+.=.+-+|.||+++|..-+
T Consensus 435 ---v~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 435 ---VRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred ---eeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEEe
Confidence 2222234456799999999999999987776 79999999999887666666566789999999887654
No 271
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.15 E-value=2.7e-08 Score=123.67 Aligned_cols=232 Identities=11% Similarity=0.097 Sum_probs=155.4
Q ss_pred EEEEECCC-CCeEEEEeCCCcEEEEeCCCCCceeEEecc--c------------CCCeEEEEEcCCCCeEEEEEeCCCcE
Q 003840 558 TDVRFSPS-MPRLATSSFDKTVRVWDADNPGYSLRTFMG--H------------SASVMSLDFHPNKDDLICSCDGDGEI 622 (792)
Q Consensus 558 ~~i~fspd-g~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~--h------------~~~V~sl~fspd~~~ll~sgs~Dg~I 622 (792)
..++++++ +.++++-+.++.|++||... ..+..+.+ . -.....|+|.++++.++++-...+.|
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G--~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~I 648 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG--NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHAL 648 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCC--CEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceE
Confidence 46788774 55677777888999999864 33333322 1 12357899998877666565567889
Q ss_pred EEEEcCCCeeEEEee-------------------CCeeEEEEecCCCEEEE-EEcCCeEEEEECCCCeEEEEecCC----
Q 003840 623 RYWSINNGSCTRVFK-------------------GGTAQMRFQPHLGRYLA-AAAENVVSILDAETQACRLSLQGH---- 678 (792)
Q Consensus 623 ~iwdl~~~~~~~~~~-------------------~~~~~v~~sp~~~~lla-~s~dg~I~i~D~~t~~~~~~l~~h---- 678 (792)
+++|+.++....... .....++++++++.+++ ...++.|++||..++.... +.+.
T Consensus 649 r~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~-~~G~G~~~ 727 (1057)
T PLN02919 649 REIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRV-FSGDGYER 727 (1057)
T ss_pred EEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEE-EecCCccc
Confidence 999998765432211 12346889996665554 4567899999998875432 1110
Q ss_pred -----------CCCeEEEEEcCCCCEEEEEe-CC-eEEEEECCCCCCcceE----------EEeec--------CCCceE
Q 003840 679 -----------TKPIDSVCWDPSGELLASVS-ED-SVRVWTVGSGSEGECV----------HELSC--------NGNKFH 727 (792)
Q Consensus 679 -----------~~~V~sv~~spdg~~Las~s-~d-~I~IwDl~s~~~~~~i----------~~~~~--------~~~~i~ 727 (792)
-.....|+|+|++++|+++. .+ .|++||+.++...... ..+.. ......
T Consensus 728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~ 807 (1057)
T PLN02919 728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPL 807 (1057)
T ss_pred cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCc
Confidence 12345699999998555544 44 9999999865321000 00000 011246
Q ss_pred EEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEccc--------------CCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003840 728 SCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAH--------------EGLIAALAVSTETGYVASASHDKFVKLWK 792 (792)
Q Consensus 728 si~fspdg~~L~sgs~dg~I~IwDl~~~~~~~~~~h--------------~~~V~sl~fspdg~~LaSgs~DG~I~IWd 792 (792)
.++|+++|..+++-..++.|++||..++.+..+.+. -.....|+++++|+++++-+.++.|++||
T Consensus 808 Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid 886 (1057)
T PLN02919 808 GVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLD 886 (1057)
T ss_pred eeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEE
Confidence 889999999777777888999999998877654432 12577899999999888888899999996
No 272
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.15 E-value=1.7e-09 Score=125.61 Aligned_cols=194 Identities=13% Similarity=0.200 Sum_probs=151.8
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCC----EEEEEECCCCCeEEEEeCCCcEEEEeCCCCC
Q 003840 512 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSL----ITDVRFSPSMPRLATSSFDKTVRVWDADNPG 587 (792)
Q Consensus 512 ~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~----V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~ 587 (792)
.+.|....+..+.+.++.++.+..+.+||...+.....+...... ..-+-++++.-++++|+.-+.|.+|+.....
T Consensus 87 s~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn 166 (967)
T KOG0974|consen 87 SDWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDN 166 (967)
T ss_pred cccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccC
Confidence 344555667778889999999999999999887776665533222 1223345666689999999999999998534
Q ss_pred ceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEE----EeeCCeeEEEEecCCCEEEEEEcCCeEEE
Q 003840 588 YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR----VFKGGTAQMRFQPHLGRYLAAAAENVVSI 663 (792)
Q Consensus 588 ~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~----~~~~~~~~v~~sp~~~~lla~s~dg~I~i 663 (792)
..+ .+.+|.+.|.++.|+-+|. +++++++|.++|+|++++.+... -+...+..++|.+. ++++++.|-+.++
T Consensus 167 ~p~-~l~GHeG~iF~i~~s~dg~-~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrv 242 (967)
T KOG0974|consen 167 KPI-RLKGHEGSIFSIVTSLDGR-YIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRV 242 (967)
T ss_pred Ccc-eecccCCceEEEEEccCCc-EEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEE
Confidence 444 6889999999999999976 56699999999999999988665 23345677888887 9999999999999
Q ss_pred EECCCCeEEEEecCCC-CCeEEEEEcCCCCEEEEEeCC-eEEEEECCCC
Q 003840 664 LDAETQACRLSLQGHT-KPIDSVCWDPSGELLASVSED-SVRVWTVGSG 710 (792)
Q Consensus 664 ~D~~t~~~~~~l~~h~-~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~ 710 (792)
|+.+.. .+..+.+|. ..|..++..++...+++++.| .+++||+...
T Consensus 243 W~~~~~-~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 243 WGVNGT-QLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred Eecccc-eehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence 976543 334666665 469999999988899999999 9999998653
No 273
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.15 E-value=3.9e-08 Score=122.29 Aligned_cols=239 Identities=13% Similarity=0.144 Sum_probs=160.3
Q ss_pred EEEEEcCC-CCEEEEEeCCCeEEEEECCCCceeEEecc-C-------------CCCEEEEEECCCCCeEEEEe-CCCcEE
Q 003840 516 ICCHFSSD-GKLLATGGHDKKAVLWHTDTLKSKTNLEE-H-------------SSLITDVRFSPSMPRLATSS-FDKTVR 579 (792)
Q Consensus 516 ~~lafspd-g~~Lasgs~Dg~I~vWdl~t~~~~~~l~~-h-------------~~~V~~i~fspdg~~Lasgs-~Dg~V~ 579 (792)
..++++++ ++++++-..++.|++||... ..+..+.. . -.....|+|.+++..|+++. ..+.|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCC-CEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence 46788874 56677777788999999764 44444332 1 12357899999888766654 457799
Q ss_pred EEeCCCCCceeEEeccc-----------------CCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee-----
Q 003840 580 VWDADNPGYSLRTFMGH-----------------SASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK----- 637 (792)
Q Consensus 580 IWdl~s~~~~i~~~~~h-----------------~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~----- 637 (792)
++|+.+ ..+.++.+. -..-.+|+|+|++..++++...++.|++||..++.......
T Consensus 650 ~id~~~--~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~ 727 (1057)
T PLN02919 650 EIDFVN--ETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYER 727 (1057)
T ss_pred EEecCC--CEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccc
Confidence 999876 234433210 11236799999777788888889999999998776432110
Q ss_pred ------------CCeeEEEEecCCCEEEEEEc-CCeEEEEECCCCeEEEEecC-------------C--------CCCeE
Q 003840 638 ------------GGTAQMRFQPHLGRYLAAAA-ENVVSILDAETQACRLSLQG-------------H--------TKPID 683 (792)
Q Consensus 638 ------------~~~~~v~~sp~~~~lla~s~-dg~I~i~D~~t~~~~~~l~~-------------h--------~~~V~ 683 (792)
.....++++++++.++++.. ++.|++||++++.......+ . -....
T Consensus 728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~ 807 (1057)
T PLN02919 728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPL 807 (1057)
T ss_pred cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCc
Confidence 12345889999986665554 68999999987653221100 0 01235
Q ss_pred EEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEE----------eecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 003840 684 SVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHE----------LSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNM 752 (792)
Q Consensus 684 sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~----------~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl 752 (792)
.++|+++|+++++.+.+ .|++||..++........ ....-.....++++++|+.+++-+.++.|++||+
T Consensus 808 Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~ 887 (1057)
T PLN02919 808 GVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDL 887 (1057)
T ss_pred eeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEEC
Confidence 88999999988887777 999999976521111100 0111235678999999997777778889999999
Q ss_pred CCCcE
Q 003840 753 SENKT 757 (792)
Q Consensus 753 ~~~~~ 757 (792)
.+++.
T Consensus 888 ~~~~~ 892 (1057)
T PLN02919 888 NKGEA 892 (1057)
T ss_pred CCCcc
Confidence 88764
No 274
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.14 E-value=1.9e-09 Score=111.20 Aligned_cols=238 Identities=16% Similarity=0.258 Sum_probs=155.0
Q ss_pred CCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCc----eeEEeccc------------CCCeEEEEEcCCCC-eEEEE
Q 003840 553 HSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGY----SLRTFMGH------------SASVMSLDFHPNKD-DLICS 615 (792)
Q Consensus 553 h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~----~i~~~~~h------------~~~V~sl~fspd~~-~ll~s 615 (792)
..+-|.+|.|...|.+|+||+.+|.|.+|.-+.... ....+..| ...|..|.|.++++ ..++.
T Consensus 24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl 103 (433)
T KOG1354|consen 24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL 103 (433)
T ss_pred hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence 446689999999999999999999999997764332 22333333 24588899987654 34556
Q ss_pred EeCCCcEEEEEcCCCeeEE-----------------------------------Ee----eCCeeEEEEecCCCEEEEEE
Q 003840 616 CDGDGEIRYWSINNGSCTR-----------------------------------VF----KGGTAQMRFQPHLGRYLAAA 656 (792)
Q Consensus 616 gs~Dg~I~iwdl~~~~~~~-----------------------------------~~----~~~~~~v~~sp~~~~lla~s 656 (792)
.+.|.+|++|.+....... .+ ..++.++.++.+...+ ..+
T Consensus 104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~-lSA 182 (433)
T KOG1354|consen 104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETF-LSA 182 (433)
T ss_pred ecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceE-eec
Confidence 7789999999986432111 11 1234556666664444 455
Q ss_pred cCCeEEEEECCCCeE---EEEecCCC-----CCeEEEEEcCCC-C-EEEEEeCCeEEEEECCCCCC----cceEE-----
Q 003840 657 AENVVSILDAETQAC---RLSLQGHT-----KPIDSVCWDPSG-E-LLASVSEDSVRVWTVGSGSE----GECVH----- 717 (792)
Q Consensus 657 ~dg~I~i~D~~t~~~---~~~l~~h~-----~~V~sv~~spdg-~-~Las~s~d~I~IwDl~s~~~----~~~i~----- 717 (792)
.|-.|.+|.++-... +..++.+. .-|++..|+|.. + ++++.+.++|++.|++.... .+...
T Consensus 183 DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp 262 (433)
T KOG1354|consen 183 DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDP 262 (433)
T ss_pred cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCC
Confidence 677899998875422 23333332 348888999943 3 44445555999999984310 01111
Q ss_pred ----EeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC-CCcEE-EEcccC------------CCe---EEEEEeCCC
Q 003840 718 ----ELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMS-ENKTM-TLTAHE------------GLI---AALAVSTET 776 (792)
Q Consensus 718 ----~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~-~~~~~-~~~~h~------------~~V---~sl~fspdg 776 (792)
-+...-..|..+.|+.+|+|+++-.. -+|+|||+. ..+.+ +...|. ..| ..++|+-++
T Consensus 263 ~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~ 341 (433)
T KOG1354|consen 263 SSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGND 341 (433)
T ss_pred cchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCc
Confidence 11112245788999999999887543 589999984 33333 443442 122 357899999
Q ss_pred CEEEEEeCCCcEEEeC
Q 003840 777 GYVASASHDKFVKLWK 792 (792)
Q Consensus 777 ~~LaSgs~DG~I~IWd 792 (792)
.+++||+....+++|+
T Consensus 342 ~~v~TGsy~n~frvf~ 357 (433)
T KOG1354|consen 342 SYVMTGSYNNVFRVFN 357 (433)
T ss_pred ceEecccccceEEEec
Confidence 9999999999999885
No 275
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.13 E-value=6.4e-10 Score=113.10 Aligned_cols=237 Identities=17% Similarity=0.323 Sum_probs=162.5
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-----eeEEeccC------------CCCEEEEEECCCCC--eEEEE
Q 003840 512 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK-----SKTNLEEH------------SSLITDVRFSPSMP--RLATS 572 (792)
Q Consensus 512 ~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~-----~~~~l~~h------------~~~V~~i~fspdg~--~Lasg 572 (792)
.+.|+++.|...|.||++|...|.|.+|.-+... ....+.+| ...|..|.|..++. .++..
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 4569999999999999999999999999765432 12223333 34588899987543 67888
Q ss_pred eCCCcEEEEeCCCCCc-----------------------------------------eeEEe-cccCCCeEEEEEcCCCC
Q 003840 573 SFDKTVRVWDADNPGY-----------------------------------------SLRTF-MGHSASVMSLDFHPNKD 610 (792)
Q Consensus 573 s~Dg~V~IWdl~s~~~-----------------------------------------~i~~~-~~h~~~V~sl~fspd~~ 610 (792)
+.|++|++|.+..... +.+.+ ..|...|.+|.|+.|..
T Consensus 106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~e 185 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKE 185 (460)
T ss_pred cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchh
Confidence 8999999998864310 01111 35777789999998876
Q ss_pred eEEEEEeCCCcEEEEEcCCCe-eEEE--ee--------CCeeEEEEecCCC-EEEEEEcCCeEEEEECCCCeE------E
Q 003840 611 DLICSCDGDGEIRYWSINNGS-CTRV--FK--------GGTAQMRFQPHLG-RYLAAAAENVVSILDAETQAC------R 672 (792)
Q Consensus 611 ~ll~sgs~Dg~I~iwdl~~~~-~~~~--~~--------~~~~~v~~sp~~~-~lla~s~dg~I~i~D~~t~~~------~ 672 (792)
.++ + ..|-.|.+|+++... +... ++ .-+++..|+|... .+...++.|.|++.|++.... +
T Consensus 186 t~l-S-aDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~kl 263 (460)
T COG5170 186 TLL-S-ADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKL 263 (460)
T ss_pred eee-e-ccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhh
Confidence 555 4 458889999987432 1111 11 2345677888764 455667789999999984311 1
Q ss_pred EE----------ecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEeecCC------------Cc---eE
Q 003840 673 LS----------LQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNG------------NK---FH 727 (792)
Q Consensus 673 ~~----------l~~h~~~V~sv~~spdg~~Las~s~d~I~IwDl~s~~~~~~i~~~~~~~------------~~---i~ 727 (792)
+. +.+-...|..+.|+++|+||++-+.-+|+|||++..+ .++.++..|. .. -.
T Consensus 264 fe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k--~pikTi~~h~~l~~~l~d~YEnDaifdkF 341 (460)
T COG5170 264 FELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAK--NPIKTIPMHCDLMDELNDVYENDAIFDKF 341 (460)
T ss_pred hhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEeccccc--CCceeechHHHHHHHHHhhhhccceeeeE
Confidence 11 1122356788999999999998777799999998654 4555543331 11 24
Q ss_pred EEEEeCCCCEEEEEEcCCeEEEEEC
Q 003840 728 SCVFHPTYPSLLVIGCYQSLELWNM 752 (792)
Q Consensus 728 si~fspdg~~L~sgs~dg~I~IwDl 752 (792)
.|.|+.|.+.+++|+..+..-||-.
T Consensus 342 eisfSgd~~~v~sgsy~NNfgiyp~ 366 (460)
T COG5170 342 EISFSGDDKHVLSGSYSNNFGIYPT 366 (460)
T ss_pred EEEecCCcccccccccccceeeecc
Confidence 5778888889999988777777653
No 276
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.13 E-value=1.8e-08 Score=109.76 Aligned_cols=269 Identities=14% Similarity=0.194 Sum_probs=181.7
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeC-----------CCcEEEEeC
Q 003840 515 VICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF-----------DKTVRVWDA 583 (792)
Q Consensus 515 V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~-----------Dg~V~IWdl 583 (792)
-+-+.|||.|.||++--.-| |.+|--++...+..+. |. .|.-+.|||+.+||+|=+. ...++|||+
T Consensus 213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI 289 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDI 289 (698)
T ss_pred eeeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-CC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEEc
Confidence 46789999999999986554 8899877777666664 43 4889999999999998653 256999999
Q ss_pred CCCCceeEEecccC--CCe-EEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEE--Eee-CCeeEEEEecCCCEEEEEEc
Q 003840 584 DNPGYSLRTFMGHS--ASV-MSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR--VFK-GGTAQMRFQPHLGRYLAAAA 657 (792)
Q Consensus 584 ~s~~~~i~~~~~h~--~~V-~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~--~~~-~~~~~v~~sp~~~~lla~s~ 657 (792)
.+ +...+.|.... ..+ .-+.|+.|++++... ....|.||+..+..++. .++ .++....|+|.+..|+.-+.
T Consensus 290 ~t-G~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm--~~~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtp 366 (698)
T KOG2314|consen 290 AT-GLLKRSFPVIKSPYLKWPIFRWSHDDKYFARM--TGNSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTP 366 (698)
T ss_pred cc-cchhcceeccCCCccccceEEeccCCceeEEe--ccceEEEEecCceeeecccccCCccccCcccCCCcceEEEEcc
Confidence 98 66666665422 222 346789887754433 34789999987644432 222 46677889999777666544
Q ss_pred C-----CeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-----------eEEEEECCCCCCcceEEEeec
Q 003840 658 E-----NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-----------SVRVWTVGSGSEGECVHELSC 721 (792)
Q Consensus 658 d-----g~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-----------~I~IwDl~s~~~~~~i~~~~~ 721 (792)
. ..+.+..+.++..+++..-+.-.-..+-|-.+|+||+.--+. .+.|+.++.... .+..+.
T Consensus 367 e~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdI--pve~ve- 443 (698)
T KOG2314|consen 367 ETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDI--PVEVVE- 443 (698)
T ss_pred cccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCC--Cceeee-
Confidence 2 367777777777766655544444456788888888754321 356666654432 222221
Q ss_pred CCCceEEEEEeCCCCEEEEEEcC---CeEEEEECCC-CcEEEE--cccCCCeEEEEEeCCCCEEEEEe---CCCcEEEeC
Q 003840 722 NGNKFHSCVFHPTYPSLLVIGCY---QSLELWNMSE-NKTMTL--TAHEGLIAALAVSTETGYVASAS---HDKFVKLWK 792 (792)
Q Consensus 722 ~~~~i~si~fspdg~~L~sgs~d---g~I~IwDl~~-~~~~~~--~~h~~~V~sl~fspdg~~LaSgs---~DG~I~IWd 792 (792)
-...|..++|.|.|+.+++.+.. .++.+|.+++ .....+ .-.....+.+.|+|.|++++.+. ..|.+.++|
T Consensus 444 lke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D 523 (698)
T KOG2314|consen 444 LKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYD 523 (698)
T ss_pred cchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcccccceEEEcCCCcEEEEEEecccccceEEEe
Confidence 24578899999999988887664 4899998874 222211 11225578899999999988764 357777765
No 277
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.11 E-value=6e-08 Score=109.34 Aligned_cols=226 Identities=12% Similarity=0.104 Sum_probs=148.0
Q ss_pred CeEEEEECCCCceeEEeccCCCCEEEEEECCCCCe-EEEEeCC---CcEEEEeCCCCCceeEEecccCCCeEEEEEcCCC
Q 003840 534 KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPR-LATSSFD---KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNK 609 (792)
Q Consensus 534 g~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~-Lasgs~D---g~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~ 609 (792)
..|.+-|.+... ...+.... .+....|+|||+. ++..+.+ ..|+++|+.+ +. .+.+....+.+....|+||+
T Consensus 169 ~~l~~~d~dg~~-~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~t-g~-~~~lt~~~g~~~~~~~SPDG 244 (419)
T PRK04043 169 SNIVLADYTLTY-QKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYT-GK-KEKIASSQGMLVVSDVSKDG 244 (419)
T ss_pred ceEEEECCCCCc-eeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCC-Cc-EEEEecCCCcEEeeEECCCC
Confidence 455555555443 33333333 7788999999984 6654443 4588899976 33 23333355666778899999
Q ss_pred CeEEEEEeCC--CcEEEEEcCCCeeEEEeeCC--eeEEEEecCCCEEEEEEcC-C--eEEEEECCCCeEEEEecCCCCCe
Q 003840 610 DDLICSCDGD--GEIRYWSINNGSCTRVFKGG--TAQMRFQPHLGRYLAAAAE-N--VVSILDAETQACRLSLQGHTKPI 682 (792)
Q Consensus 610 ~~ll~sgs~D--g~I~iwdl~~~~~~~~~~~~--~~~v~~sp~~~~lla~s~d-g--~I~i~D~~t~~~~~~l~~h~~~V 682 (792)
+.++++.+.+ ..|+++|+.++......... .....|+|+++.++..+.. + .|+++|+.+++........ ..
T Consensus 245 ~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g-~~- 322 (419)
T PRK04043 245 SKLLLTMAPKGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHG-KN- 322 (419)
T ss_pred CEEEEEEccCCCcEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCC-Cc-
Confidence 9888777655 46888898887755543332 3456899999998887753 2 7899999888764433221 11
Q ss_pred EEEEEcCCCCEEEEEeC--------C--eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCC---eEEE
Q 003840 683 DSVCWDPSGELLASVSE--------D--SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ---SLEL 749 (792)
Q Consensus 683 ~sv~~spdg~~Las~s~--------d--~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg---~I~I 749 (792)
...|+|||++|+..+. + .|.+.|+.++.. ..+... .......|+|||+.|+....++ .|.+
T Consensus 323 -~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~----~~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~ 396 (419)
T PRK04043 323 -NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI----RRLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGI 396 (419)
T ss_pred -CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe----EECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEE
Confidence 2489999998877653 2 577888876532 223222 2233588999999888877553 5788
Q ss_pred EECCCCcEEEEcccCCCeEEEE
Q 003840 750 WNMSENKTMTLTAHEGLIAALA 771 (792)
Q Consensus 750 wDl~~~~~~~~~~h~~~V~sl~ 771 (792)
+++.......+....+.|...+
T Consensus 397 ~~l~g~~~~~l~~~~g~~~~p~ 418 (419)
T PRK04043 397 IRLNYNKSFLFPLKVGKIQSID 418 (419)
T ss_pred EecCCCeeEEeecCCCccCCCC
Confidence 8888776666655555554433
No 278
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.11 E-value=2.4e-08 Score=112.45 Aligned_cols=191 Identities=10% Similarity=0.089 Sum_probs=131.8
Q ss_pred CeEEEEEcCCCCE-EEEEeCC---CeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEE-eCC--CcEEEEeCCCC
Q 003840 514 KVICCHFSSDGKL-LATGGHD---KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATS-SFD--KTVRVWDADNP 586 (792)
Q Consensus 514 ~V~~lafspdg~~-Lasgs~D---g~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasg-s~D--g~V~IWdl~s~ 586 (792)
.+....|+|||+. ++..+.+ ..|+++|+.+++...... ..+.+....|+|||+.|+.. +.+ ..|+++|+.+
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~- 266 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNT- 266 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCC-
Confidence 7788999999985 6654443 469999998887655443 55566778999999876654 333 4577778765
Q ss_pred CceeEEecccCCCeEEEEEcCCCCeEEEEEeCCC--cEEEEEcCCCeeEEEeeCCeeEEEEecCCCEEEEEEcC------
Q 003840 587 GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDG--EIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAE------ 658 (792)
Q Consensus 587 ~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg--~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~lla~s~d------ 658 (792)
+. .+.+..+........|+|||+.++++....+ .|+++|+.+++..+....+.....|+|+++.++.....
T Consensus 267 g~-~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~~~~~SPDG~~Ia~~~~~~~~~~~ 345 (419)
T PRK04043 267 KT-LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGKNNSSVSTYKNYIVYSSRETNNEFG 345 (419)
T ss_pred Cc-EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCCcCceECCCCCEEEEEEcCCCcccC
Confidence 33 4445544444456789999998888876555 58888888887755543332346899999999887753
Q ss_pred ---CeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC----eEEEEECCC
Q 003840 659 ---NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVGS 709 (792)
Q Consensus 659 ---g~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d----~I~IwDl~s 709 (792)
..|.++|+.++.... +... .......|+|||+.|+..+.. .+.++++..
T Consensus 346 ~~~~~I~v~d~~~g~~~~-LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g 401 (419)
T PRK04043 346 KNTFNLYLISTNSDYIRR-LTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNY 401 (419)
T ss_pred CCCcEEEEEECCCCCeEE-CCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCC
Confidence 378889998886543 3322 233358899999987766543 466666643
No 279
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.09 E-value=3.8e-08 Score=110.85 Aligned_cols=208 Identities=15% Similarity=0.169 Sum_probs=150.6
Q ss_pred cceeeeeeeecCCCCeEEEEEcCCC------------CEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECC---
Q 003840 500 FSFKEANSVRASTSKVICCHFSSDG------------KLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSP--- 564 (792)
Q Consensus 500 ~~~~~~~~l~~H~~~V~~lafspdg------------~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fsp--- 564 (792)
.+++.+..+.-|...|+.+.|.|-. -+||++...|.|.|||+..+..+..+..|.+.|.+++|-+
T Consensus 43 ~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd 122 (1062)
T KOG1912|consen 43 RSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARD 122 (1062)
T ss_pred hhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccC
Confidence 3445666777888889999887621 2678888899999999999999999999999999999977
Q ss_pred CC-CeEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCC-------CeeEEEe
Q 003840 565 SM-PRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN-------GSCTRVF 636 (792)
Q Consensus 565 dg-~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~-------~~~~~~~ 636 (792)
+. ..|++-....+|.+|+.++ +..+..+........|+.+.|-+..-|+.-+..|.|.+-+.-. ++...+-
T Consensus 123 ~Srd~LlaIh~ss~lvLwntdt-G~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~ 201 (1062)
T KOG1912|consen 123 DSRDVLLAIHGSSTLVLWNTDT-GEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQIT 201 (1062)
T ss_pred cchheeEEecCCcEEEEEEccC-CceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEe
Confidence 33 3667777788899999998 5556555555566778999887666666666677777665421 1111111
Q ss_pred eC--------------------C--------eeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEc
Q 003840 637 KG--------------------G--------TAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWD 688 (792)
Q Consensus 637 ~~--------------------~--------~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~s 688 (792)
.. + ...++|+|.-+.++.......+.|+|++-..++....-..+.+.-+.|-
T Consensus 202 sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vl 281 (1062)
T KOG1912|consen 202 SDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVL 281 (1062)
T ss_pred cCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEec
Confidence 00 0 1125678988889999999999999999888877766556666667777
Q ss_pred CCCC--EEEEEeCC-eEEEEECC
Q 003840 689 PSGE--LLASVSED-SVRVWTVG 708 (792)
Q Consensus 689 pdg~--~Las~s~d-~I~IwDl~ 708 (792)
|+++ .|++...| .+.||--+
T Consensus 282 P~~~rd~LfclH~nG~ltirvrk 304 (1062)
T KOG1912|consen 282 PDPRRDALFCLHSNGRLTIRVRK 304 (1062)
T ss_pred cCCCcceEEEEecCCeEEEEEee
Confidence 7654 67777766 77777544
No 280
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.06 E-value=7.5e-10 Score=133.46 Aligned_cols=224 Identities=14% Similarity=0.225 Sum_probs=166.0
Q ss_pred eeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEec-cCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCC
Q 003840 507 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE-EHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN 585 (792)
Q Consensus 507 ~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~-~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s 585 (792)
.++.+-..|.|+.-+|...+.++|+.||.|++|....+..+..++ .....|+.+.|+..|+.+..+..||.+.+|.+.
T Consensus 2203 ~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~- 2281 (2439)
T KOG1064|consen 2203 MIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS- 2281 (2439)
T ss_pred EeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-
Confidence 355667788999889988899999999999999999888887776 234889999999999999999999999999997
Q ss_pred CCceeEEecccCCCeEEEEEcCCCCeEEEEEe---CCCcEEEEEcCCCeeEEEeeCCeeEEEEecCCCEEEEEEcCCeEE
Q 003840 586 PGYSLRTFMGHSASVMSLDFHPNKDDLICSCD---GDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVS 662 (792)
Q Consensus 586 ~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs---~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~lla~s~dg~I~ 662 (792)
.++......|.....++.|.. .++++++ .++.+.+||......
T Consensus 2282 -pk~~~s~qchnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~~~------------------------------ 2327 (2439)
T KOG1064|consen 2282 -PKPYTSWQCHNKALSDFRFIG---SLLATAGRSSDNRNVCLWDTLLPPM------------------------------ 2327 (2439)
T ss_pred -CcceeccccCCccccceeeee---hhhhccccCCCCCcccchhcccCcc------------------------------
Confidence 567788889999999998875 3455543 356777777532110
Q ss_pred EEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEE
Q 003840 663 ILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVI 741 (792)
Q Consensus 663 i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sg 741 (792)
..++. ..|.+.++++++.|...+|++|+.+ .|++||++.. ..++.+.. ++ ...+|+++
T Consensus 2328 ------~s~v~--~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqr---ql~h~~~~---------~~-~~~~f~~~ 2386 (2439)
T KOG1064|consen 2328 ------NSLVH--TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQR---QLRHTFQA---------LD-TREYFVTG 2386 (2439)
T ss_pred ------cceee--eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHH---HHHHHhhh---------hh-hhheeecc
Confidence 01122 4588999999999999999999998 9999999754 33433332 44 56689999
Q ss_pred EcCCeEEEEECCCCcEEEEc----ccCCC--e--EEEEEeCCCCEEEEEeCCCc
Q 003840 742 GCYQSLELWNMSENKTMTLT----AHEGL--I--AALAVSTETGYVASASHDKF 787 (792)
Q Consensus 742 s~dg~I~IwDl~~~~~~~~~----~h~~~--V--~sl~fspdg~~LaSgs~DG~ 787 (792)
+..|.|+||++.....+... +|.+. + .-+... -+..|.+|+.||+
T Consensus 2387 ss~g~ikIw~~s~~~ll~~~p~e~ak~gfFr~~g~Q~~v~-~~nrifsCgad~~ 2439 (2439)
T KOG1064|consen 2387 SSEGNIKIWRLSEFGLLHTFPSEHAKQGFFRNIGMQINVG-QCNRIFSCGADGT 2439 (2439)
T ss_pred CcccceEEEEccccchhhcCchhhcccchhhhcCceeeec-cCceEEEecCCCC
Confidence 99999999999887655211 22221 1 112222 2456778888874
No 281
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.06 E-value=8.8e-10 Score=132.89 Aligned_cols=208 Identities=17% Similarity=0.288 Sum_probs=162.4
Q ss_pred CCeEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeC----Cee
Q 003840 566 MPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG----GTA 641 (792)
Q Consensus 566 g~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~----~~~ 641 (792)
+..+..+..++.+.-|..+..+ ..++.+-..|.++.-||...+++ +|+.||.|++|....+..+..+.. .+.
T Consensus 2180 s~~~~~~n~~~~~~tq~~~~~~---~~~k~~v~~v~r~~sHp~~~~Yl-tgs~dgsv~~~~w~~~~~v~~~rt~g~s~vt 2255 (2439)
T KOG1064|consen 2180 SNRFTPSNLPWLGSTQTSRGAS---VMIKHPVENVRRMTSHPSDPYYL-TGSQDGSVRMFEWGHGQQVVCFRTAGNSRVT 2255 (2439)
T ss_pred cccCCcccCCccccceecccce---eEeecccCceeeecCCCCCceEE-ecCCCceEEEEeccCCCeEEEeeccCcchhh
Confidence 3445555556666666655322 22334556788888899877666 999999999999998887776642 355
Q ss_pred EEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEe---CC-eEEEEECCCCCCcceEE
Q 003840 642 QMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVS---ED-SVRVWTVGSGSEGECVH 717 (792)
Q Consensus 642 ~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s---~d-~I~IwDl~s~~~~~~i~ 717 (792)
.++|+..|+.+-++..||.+.+|... .++......|......+.|-. ..+++.+ ++ .+.+||..-.....+++
T Consensus 2256 r~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~ 2332 (2439)
T KOG1064|consen 2256 RSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH 2332 (2439)
T ss_pred hhhhcccCCceeeeccCCceeecccC-CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee
Confidence 68899999999999999999999987 677778888999999888876 5566554 33 89999987654445565
Q ss_pred EeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003840 718 ELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 792 (792)
Q Consensus 718 ~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd 792 (792)
.+|...++++++-|....|++|+.+|.|++||++-.+.+ .+.. ++ ...+|++|+..|.|+||+
T Consensus 2333 --~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~ 2396 (2439)
T KOG1064|consen 2333 --TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWR 2396 (2439)
T ss_pred --eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEE
Confidence 789999999999999999999999999999999877655 2222 44 567899999999999996
No 282
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.03 E-value=3.4e-08 Score=99.08 Aligned_cols=246 Identities=9% Similarity=-0.005 Sum_probs=165.6
Q ss_pred CCeEEEEECCCCc--eeEEeccCCCCEEEEEECC-----CCCeEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEE
Q 003840 533 DKKAVLWHTDTLK--SKTNLEEHSSLITDVRFSP-----SMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDF 605 (792)
Q Consensus 533 Dg~I~vWdl~t~~--~~~~l~~h~~~V~~i~fsp-----dg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~f 605 (792)
...|.+|++.+.. .+..+ +.+.|.| ...+||.|+.-|...+|...+..........|...|+-+.=
T Consensus 51 t~sv~i~~~y~N~~~iv~~y-------~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r 123 (344)
T KOG4532|consen 51 TISVPINSHYSNPKGIVEFY-------TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKR 123 (344)
T ss_pred eeeeEeccccCCchhhEEee-------ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhh
Confidence 3457777765433 22222 2344544 34489999999999999998755555555555554433322
Q ss_pred cCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee---CCeeEEEEecCCCEEEEEEcCCeEEEEECCCC-e-EEE-EecCCC
Q 003840 606 HPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLGRYLAAAAENVVSILDAETQ-A-CRL-SLQGHT 679 (792)
Q Consensus 606 spd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~---~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~-~-~~~-~l~~h~ 679 (792)
..+...-+..++.|.++++.+++-+....... -....+.+++++.+.++.+....|..|.+... + .+. .....+
T Consensus 124 ~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~ 203 (344)
T KOG4532|consen 124 YCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTS 203 (344)
T ss_pred hcccccceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccC
Confidence 22333334578889999999887655443332 23677899999999999999999999988654 2 233 233344
Q ss_pred CCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcc--eEEEeecCCCceEEEEEeCCCC--EEEEEEcCCeEEEEECCC
Q 003840 680 KPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGE--CVHELSCNGNKFHSCVFHPTYP--SLLVIGCYQSLELWNMSE 754 (792)
Q Consensus 680 ~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~--~i~~~~~~~~~i~si~fspdg~--~L~sgs~dg~I~IwDl~~ 754 (792)
..-.+..|+.....+|++..| ++.|||++...... .-..-..|.+.+..|.|++.|. .|+..-.-+.+.+.|+++
T Consensus 204 D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~ 283 (344)
T KOG4532|consen 204 DHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRN 283 (344)
T ss_pred CCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEccc
Confidence 556788999999999999999 99999998764322 1223345788899999998664 455555557899999998
Q ss_pred CcEE--------EEcccCC-CeEEEEEeCCCCEEEEEeCC
Q 003840 755 NKTM--------TLTAHEG-LIAALAVSTETGYVASASHD 785 (792)
Q Consensus 755 ~~~~--------~~~~h~~-~V~sl~fspdg~~LaSgs~D 785 (792)
++-. .+..|.. .|..-.|+.++.-+.+.+++
T Consensus 284 ~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~ 323 (344)
T KOG4532|consen 284 YVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNEL 323 (344)
T ss_pred CceeeEEecCccccccccccccccccccCCCcccccccch
Confidence 8644 1223333 38888888887766665554
No 283
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.03 E-value=4.6e-07 Score=110.90 Aligned_cols=254 Identities=14% Similarity=0.196 Sum_probs=164.1
Q ss_pred CCCCeEEEEEcCCCCEEEEEeC---C---CeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeC---CCcEEEE
Q 003840 511 STSKVICCHFSSDGKLLATGGH---D---KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF---DKTVRVW 581 (792)
Q Consensus 511 H~~~V~~lafspdg~~Lasgs~---D---g~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~---Dg~V~IW 581 (792)
+.+.-..|+|-.||.|+|+.+. + ..|+||+-+ |....+-+.-.+--.+++|.|.|++||+.-. ...|.+|
T Consensus 208 ~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFf 286 (928)
T PF04762_consen 208 WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFF 286 (928)
T ss_pred cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEE
Confidence 5667789999999999999874 2 579999976 6655555544555568899999999998864 3457777
Q ss_pred eCCCCCceeEEe----cccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEE----ee--CCeeEEEEecCCCE
Q 003840 582 DADNPGYSLRTF----MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV----FK--GGTAQMRFQPHLGR 651 (792)
Q Consensus 582 dl~s~~~~i~~~----~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~----~~--~~~~~v~~sp~~~~ 651 (792)
.-+ +.....| ......|..|.|++++.. |+....|. |.+|-..+...... +. .....+.|+|....
T Consensus 287 ErN--GLrhgeF~l~~~~~~~~v~~l~Wn~ds~i-LAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~ 362 (928)
T PF04762_consen 287 ERN--GLRHGEFTLRFDPEEEKVIELAWNSDSEI-LAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPL 362 (928)
T ss_pred ecC--CcEeeeEecCCCCCCceeeEEEECCCCCE-EEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCC
Confidence 655 3222222 234567999999999764 44544444 99999887763322 21 22344888887654
Q ss_pred -EEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEc----CCCC-EEEEEeCCeEEEEECCCCCCc--ceEEEeecCC
Q 003840 652 -YLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWD----PSGE-LLASVSEDSVRVWTVGSGSEG--ECVHELSCNG 723 (792)
Q Consensus 652 -lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~s----pdg~-~Las~s~d~I~IwDl~s~~~~--~~i~~~~~~~ 723 (792)
+.+.+.+|.+..++.. +.++.+ |+.. .+++...+.+++-.++...-+ .+...+.. .
T Consensus 363 ~L~v~t~~g~~~~~~~~---------------~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~-~ 426 (928)
T PF04762_consen 363 RLHVLTSNGQYEIYDFA---------------WDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELEL-P 426 (928)
T ss_pred EEEEEecCCcEEEEEEE---------------EEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcC-C
Confidence 5555555777666542 112222 2222 344444447888777654332 23344443 4
Q ss_pred CceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE---------EEc----------ccCCCeEEEEEeCCCCEEEEEeC
Q 003840 724 NKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM---------TLT----------AHEGLIAALAVSTETGYVASASH 784 (792)
Q Consensus 724 ~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~---------~~~----------~h~~~V~sl~fspdg~~LaSgs~ 784 (792)
..|..++|++++..+++...||.|.+|........ .+. .....+..++|..+..+++....
T Consensus 427 ~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (928)
T PF04762_consen 427 SPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDS 506 (928)
T ss_pred CCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEec
Confidence 67999999999988999999999999985432211 111 12345778888877776666555
Q ss_pred C
Q 003840 785 D 785 (792)
Q Consensus 785 D 785 (792)
+
T Consensus 507 ~ 507 (928)
T PF04762_consen 507 D 507 (928)
T ss_pred C
Confidence 4
No 284
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.03 E-value=2.3e-10 Score=129.32 Aligned_cols=262 Identities=16% Similarity=0.203 Sum_probs=181.0
Q ss_pred ceeeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCC--cE
Q 003840 501 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK--TV 578 (792)
Q Consensus 501 ~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg--~V 578 (792)
.|+.+++|+.|+...+|++|+-+.++|++|+..|.|++|++.+|.......+|...|+.|.-+.+|..+++.+.-. ..
T Consensus 1090 RFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pls 1169 (1516)
T KOG1832|consen 1090 RFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLS 1169 (1516)
T ss_pred hcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchH
Confidence 5678889999999999999999999999999999999999999999999999999999999999999877765443 47
Q ss_pred EEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEe-eC------CeeEEEEecCCCE
Q 003840 579 RVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF-KG------GTAQMRFQPHLGR 651 (792)
Q Consensus 579 ~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~-~~------~~~~v~~sp~~~~ 651 (792)
.+|++.+......+|. .-.++.|+.....-+ .|.......+||+.++..+.++ .+ ..++..|+|.+..
T Consensus 1170 aLW~~~s~~~~~Hsf~----ed~~vkFsn~~q~r~-~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~L 1244 (1516)
T KOG1832|consen 1170 ALWDASSTGGPRHSFD----EDKAVKFSNSLQFRA-LGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTL 1244 (1516)
T ss_pred HHhccccccCcccccc----ccceeehhhhHHHHH-hcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcce
Confidence 8999987555555554 345778875533223 4555567899999998766553 21 2356779998776
Q ss_pred EEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEeecCCCceEEEEE
Q 003840 652 YLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVF 731 (792)
Q Consensus 652 lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d~I~IwDl~s~~~~~~i~~~~~~~~~i~si~f 731 (792)
++- || .+||++....++.|......+ .-.|+|.|.-++..+ .|||+++. +.++.+.. -.-..+.|
T Consensus 1245 Iln---dG--vLWDvR~~~aIh~FD~ft~~~-~G~FHP~g~eVIINS----EIwD~RTF---~lLh~VP~--Ldqc~VtF 1309 (1516)
T KOG1832|consen 1245 ILN---DG--VLWDVRIPEAIHRFDQFTDYG-GGGFHPSGNEVIINS----EIWDMRTF---KLLHSVPS--LDQCAVTF 1309 (1516)
T ss_pred Eee---Cc--eeeeeccHHHHhhhhhheecc-cccccCCCceEEeec----hhhhhHHH---HHHhcCcc--ccceEEEe
Confidence 663 33 479999887777766544333 335999999888765 48999876 33333221 11234566
Q ss_pred eCCCCEEEEEEc--C---------------CeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEE
Q 003840 732 HPTYPSLLVIGC--Y---------------QSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASA 782 (792)
Q Consensus 732 spdg~~L~sgs~--d---------------g~I~IwDl~~~~~~~~~~h~~~V~sl~fspdg~~LaSg 782 (792)
+..|..++..-. | ...+-||......+........|..++-++...+|+..
T Consensus 1310 NstG~VmYa~~~~~d~~sdvh~~r~k~p~fSSFRTf~a~dYs~iaTi~v~R~~~Dlct~~~D~~l~vI 1377 (1516)
T KOG1832|consen 1310 NSTGDVMYAMLNIEDVMSDVHTRRVKHPLFSSFRTFDAIDYSDIATIPVDRCLLDLCTEPTDSFLGVI 1377 (1516)
T ss_pred ccCccchhhhhhhhhhhhhhcccccccchhhhhccccccccccceeeecccchhhhhcCCccceEEEE
Confidence 666665443320 0 12344444444444444445556666666666666543
No 285
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.96 E-value=1.5e-08 Score=104.83 Aligned_cols=244 Identities=12% Similarity=0.208 Sum_probs=170.4
Q ss_pred CceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEE-ecccCCCeEEEEEcCCCCeEEEEEeCCCcE
Q 003840 544 LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRT-FMGHSASVMSLDFHPNKDDLICSCDGDGEI 622 (792)
Q Consensus 544 ~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~-~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I 622 (792)
...+..+++|.+.|++...-|...-+++.+.|.+++||--++.+..... .......++++.+.++.. .|+.|-..|++
T Consensus 14 p~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~-~L~vg~~ngtv 92 (404)
T KOG1409|consen 14 PELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESR-RLYVGQDNGTV 92 (404)
T ss_pred hhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccce-EEEEEEecceE
Confidence 3456678899999999999998889999999999999976654433222 223457788999988854 55588889999
Q ss_pred EEEEcCCC----eeEEEe---eCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEE
Q 003840 623 RYWSINNG----SCTRVF---KGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLA 695 (792)
Q Consensus 623 ~iwdl~~~----~~~~~~---~~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~La 695 (792)
.-+.+... ...+.+ ...+..+.|+.....+++.+.|..+.-.-.+.+..+..+.- ...-+++.|+-. +..
T Consensus 93 tefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~-~~~~t~~~~d~~--~~f 169 (404)
T KOG1409|consen 93 TEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNF-ETPASALQFDAL--YAF 169 (404)
T ss_pred EEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEe-eccCCCCceeeE--EEE
Confidence 98876532 222222 23456677777778888888887766555555433221110 001111111111 222
Q ss_pred EEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcE--EEEcccCCCeEEEEE
Q 003840 696 SVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKT--MTLTAHEGLIAALAV 772 (792)
Q Consensus 696 s~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~--~~~~~h~~~V~sl~f 772 (792)
.|... .|.+-.+.. .....+..+.+|...+.+++|.+....|++|..|..|.+||+..++- ..+.+|...|..+..
T Consensus 170 vGd~~gqvt~lr~~~-~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~ 248 (404)
T KOG1409|consen 170 VGDHSGQITMLKLEQ-NGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSY 248 (404)
T ss_pred ecccccceEEEEEee-cCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhh
Confidence 23222 333333321 22367888999999999999999999999999999999999976554 478899999999998
Q ss_pred eCCCCEEEEEeCCCcEEEeC
Q 003840 773 STETGYVASASHDKFVKLWK 792 (792)
Q Consensus 773 spdg~~LaSgs~DG~I~IWd 792 (792)
.+--+.|+++++||.|.+|+
T Consensus 249 ~~~t~~l~S~~edg~i~~w~ 268 (404)
T KOG1409|consen 249 AQHTRQLISCGEDGGIVVWN 268 (404)
T ss_pred hhhheeeeeccCCCeEEEEe
Confidence 88888999999999999996
No 286
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.94 E-value=6.4e-08 Score=109.01 Aligned_cols=236 Identities=16% Similarity=0.209 Sum_probs=155.4
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCC------------CeEEEEeCCCcEEEE
Q 003840 514 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSM------------PRLATSSFDKTVRVW 581 (792)
Q Consensus 514 ~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg------------~~Lasgs~Dg~V~IW 581 (792)
.-.++.|++.| +||.|+. ..|.|.|..+.+.+..++.|...|+.|.|.|.. -+||++...|.|.||
T Consensus 17 N~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~ 94 (1062)
T KOG1912|consen 17 NRNAADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILV 94 (1062)
T ss_pred cccccccCccc-eEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEE
Confidence 36778899988 7888864 478899999999999999999999999998721 157778888999999
Q ss_pred eCCCCCceeEEecccCCCeEEEEEcCC---CCeEEEEEeCCCcEEEEEcCCCeeEEEeeCCeeEEEEecCCCEEEEEEcC
Q 003840 582 DADNPGYSLRTFMGHSASVMSLDFHPN---KDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAE 658 (792)
Q Consensus 582 dl~s~~~~i~~~~~h~~~V~sl~fspd---~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~lla~s~d 658 (792)
|... ...+..+..|..+|..++|.+. ..+++++-....+|.+|+..+|+.+..+..
T Consensus 95 d~~~-~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~y-------------------- 153 (1062)
T KOG1912|consen 95 DFVL-ASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDY-------------------- 153 (1062)
T ss_pred Eehh-hhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeecccc--------------------
Confidence 9987 6667778888899999999653 335555555667777777777766554432
Q ss_pred CeEEEEECCCCeEEEEecCCCCCeEEEEEcC-CCC-EEEEEeCCeEEEEECC-CCCC---cceEEEeecCC---------
Q 003840 659 NVVSILDAETQACRLSLQGHTKPIDSVCWDP-SGE-LLASVSEDSVRVWTVG-SGSE---GECVHELSCNG--------- 723 (792)
Q Consensus 659 g~I~i~D~~t~~~~~~l~~h~~~V~sv~~sp-dg~-~Las~s~d~I~IwDl~-s~~~---~~~i~~~~~~~--------- 723 (792)
......|+.++| |.+ +.+.++.+.+.+-+.- ..+. .+.+.....|.
T Consensus 154 -------------------s~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~ 214 (1062)
T KOG1912|consen 154 -------------------SHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERET 214 (1062)
T ss_pred -------------------CCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhh
Confidence 122223333333 112 1222222222222211 1000 01110000000
Q ss_pred -------------C---ceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEE-EcccCCCeEEEEEeCCC--CEEEEEeC
Q 003840 724 -------------N---KFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMT-LTAHEGLIAALAVSTET--GYVASASH 784 (792)
Q Consensus 724 -------------~---~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~~-~~~h~~~V~sl~fspdg--~~LaSgs~ 784 (792)
. ....++|+|..+.++.......+.|+|++-..++. +.-..+.+.-+.|-|+. ..|++.-.
T Consensus 215 at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~ 294 (1062)
T KOG1912|consen 215 ATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHS 294 (1062)
T ss_pred hccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEec
Confidence 0 02335789999989888889999999999888773 33344556667777765 46888999
Q ss_pred CCcEEEe
Q 003840 785 DKFVKLW 791 (792)
Q Consensus 785 DG~I~IW 791 (792)
||.+.||
T Consensus 295 nG~ltir 301 (1062)
T KOG1912|consen 295 NGRLTIR 301 (1062)
T ss_pred CCeEEEE
Confidence 9999998
No 287
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.93 E-value=3.2e-06 Score=88.58 Aligned_cols=215 Identities=18% Similarity=0.197 Sum_probs=141.3
Q ss_pred EEEEEcC-CCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEEC-CCCCeEEEEeCCCcEEEEeCCCCCceeEEe
Q 003840 516 ICCHFSS-DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFS-PSMPRLATSSFDKTVRVWDADNPGYSLRTF 593 (792)
Q Consensus 516 ~~lafsp-dg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fs-pdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~ 593 (792)
.+++|.+ ++.++++....+.|+.|+..+++... +.... ...+++. ++ ..|+++..++ +.++|+.+ +.....+
T Consensus 3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~-g~l~v~~~~~-~~~~d~~~-g~~~~~~ 76 (246)
T PF08450_consen 3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPD-GRLYVADSGG-IAVVDPDT-GKVTVLA 76 (246)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTT-SEEEEEETTC-EEEEETTT-TEEEEEE
T ss_pred cceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccC-CEEEEEEcCc-eEEEecCC-CcEEEEe
Confidence 3678998 77777777788999999998876543 22222 6677777 56 4566666555 56669876 3222222
Q ss_pred cc-----cCCCeEEEEEcCCCCeEEEEEeCC--------CcEEEEEcCCCeeEEEee--CCeeEEEEecCCCEEEEEE-c
Q 003840 594 MG-----HSASVMSLDFHPNKDDLICSCDGD--------GEIRYWSINNGSCTRVFK--GGTAQMRFQPHLGRYLAAA-A 657 (792)
Q Consensus 594 ~~-----h~~~V~sl~fspd~~~ll~sgs~D--------g~I~iwdl~~~~~~~~~~--~~~~~v~~sp~~~~lla~s-~ 657 (792)
.. .....+++++.++|+ ++++.... |.|..++.. ++...... ...+.++|+++++.++++. .
T Consensus 77 ~~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~ 154 (246)
T PF08450_consen 77 DLPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSF 154 (246)
T ss_dssp EEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETT
T ss_pred eccCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECCcchheeecccc
Confidence 21 345688999999987 44454432 568888877 55444433 3456799999999887655 4
Q ss_pred CCeEEEEECCC--C-----eEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEE
Q 003840 658 ENVVSILDAET--Q-----ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSC 729 (792)
Q Consensus 658 dg~I~i~D~~t--~-----~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si 729 (792)
.+.|..||+.. . +....+....+....++++.+|+++++.... .|.++|.. + +.+..+......+++|
T Consensus 155 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G---~~~~~i~~p~~~~t~~ 230 (246)
T PF08450_consen 155 NGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-G---KLLREIELPVPRPTNC 230 (246)
T ss_dssp TTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-S---CEEEEEE-SSSSEEEE
T ss_pred cceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-c---cEEEEEcCCCCCEEEE
Confidence 78899999853 2 1122233223347889999999987776655 99999976 4 5666666665689999
Q ss_pred EEe-CCCCEEEEEE
Q 003840 730 VFH-PTYPSLLVIG 742 (792)
Q Consensus 730 ~fs-pdg~~L~sgs 742 (792)
+|. ++.+.|++.+
T Consensus 231 ~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 231 AFGGPDGKTLYVTT 244 (246)
T ss_dssp EEESTTSSEEEEEE
T ss_pred EEECCCCCEEEEEe
Confidence 994 6777777654
No 288
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.93 E-value=4.7e-07 Score=93.87 Aligned_cols=213 Identities=15% Similarity=0.048 Sum_probs=138.0
Q ss_pred CCeEEEEECCCCceeEEeccC--CCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCC
Q 003840 533 DKKAVLWHTDTLKSKTNLEEH--SSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKD 610 (792)
Q Consensus 533 Dg~I~vWdl~t~~~~~~l~~h--~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~ 610 (792)
+|.|..||..+++.+...... .....+. ..+++.++++++.++.|+.||..+ ++.+..+.. ...+....... +.
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~t-G~~~W~~~~-~~~~~~~~~~~-~~ 77 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKT-GKVLWRFDL-PGPISGAPVVD-GG 77 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTT-SEEEEEEEC-SSCGGSGEEEE-TT
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCC-CCEEEEeec-cccccceeeec-cc
Confidence 688999999999988887531 1222211 223566888889999999999988 555555443 22211111222 23
Q ss_pred eEEEEEeCCCcEEEEEcCCCeeEEEe-eCC------eeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCC--
Q 003840 611 DLICSCDGDGEIRYWSINNGSCTRVF-KGG------TAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKP-- 681 (792)
Q Consensus 611 ~ll~sgs~Dg~I~iwdl~~~~~~~~~-~~~------~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~-- 681 (792)
.+ +.+..++.|+.+|..+++.+..+ ... .........++.++++..++.|..+|.++++.+.........
T Consensus 78 ~v-~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~ 156 (238)
T PF13360_consen 78 RV-YVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGS 156 (238)
T ss_dssp EE-EEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS
T ss_pred cc-ccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCC
Confidence 34 45557889999999999998874 321 122334444788999999999999999999998888664422
Q ss_pred --------eEEEEEcCCCCEEEEEeCC-e-EEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEE
Q 003840 682 --------IDSVCWDPSGELLASVSED-S-VRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWN 751 (792)
Q Consensus 682 --------V~sv~~spdg~~Las~s~d-~-I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwD 751 (792)
+.+-....++ .++.++.+ . +.+ |+.+++ .+.... ...+.. ....++..|++++.++.|.+||
T Consensus 157 ~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~tg~---~~w~~~--~~~~~~-~~~~~~~~l~~~~~~~~l~~~d 228 (238)
T PF13360_consen 157 SPISSFSDINGSPVISDG-RVYVSSGDGRVVAV-DLATGE---KLWSKP--ISGIYS-LPSVDGGTLYVTSSDGRLYALD 228 (238)
T ss_dssp --EEEETTEEEEEECCTT-EEEEECCTSSEEEE-ETTTTE---EEEEEC--SS-ECE-CEECCCTEEEEEETTTEEEEEE
T ss_pred cceeeecccccceEEECC-EEEEEcCCCeEEEE-ECCCCC---EEEEec--CCCccC-CceeeCCEEEEEeCCCEEEEEE
Confidence 1222233345 55555555 4 555 998873 333222 222222 2457788888888999999999
Q ss_pred CCCCcEE
Q 003840 752 MSENKTM 758 (792)
Q Consensus 752 l~~~~~~ 758 (792)
+++++.+
T Consensus 229 ~~tG~~~ 235 (238)
T PF13360_consen 229 LKTGKVV 235 (238)
T ss_dssp TTTTEEE
T ss_pred CCCCCEE
Confidence 9999875
No 289
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.91 E-value=3.1e-06 Score=88.70 Aligned_cols=215 Identities=9% Similarity=0.059 Sum_probs=138.7
Q ss_pred EEEEECC-CCCeEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEc-CCCCeEEEEEeCCCcEEEEEcCCCeeEEE
Q 003840 558 TDVRFSP-SMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFH-PNKDDLICSCDGDGEIRYWSINNGSCTRV 635 (792)
Q Consensus 558 ~~i~fsp-dg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fs-pd~~~ll~sgs~Dg~I~iwdl~~~~~~~~ 635 (792)
.+++|.+ ++.++++-...+.|+.|+..+.. ...+.... ...+++. ++ ..++ .+.. +.+.++|+.+++....
T Consensus 3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~--~~~~~~~~--~~G~~~~~~~-g~l~-v~~~-~~~~~~d~~~g~~~~~ 75 (246)
T PF08450_consen 3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDTGE--VEVIDLPG--PNGMAFDRPD-GRLY-VADS-GGIAVVDPDTGKVTVL 75 (246)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTTTE--EEEEESSS--EEEEEEECTT-SEEE-EEET-TCEEEEETTTTEEEEE
T ss_pred cceEEECCCCEEEEEEcCCCEEEEEECCCCe--EEEEecCC--CceEEEEccC-CEEE-EEEc-CceEEEecCCCcEEEE
Confidence 3578888 66667777778999999998732 22222222 6778887 55 4455 4443 5566669998876544
Q ss_pred eeC--------CeeEEEEecCCCEEEEEEcC--------CeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeC
Q 003840 636 FKG--------GTAQMRFQPHLGRYLAAAAE--------NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSE 699 (792)
Q Consensus 636 ~~~--------~~~~v~~sp~~~~lla~s~d--------g~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~ 699 (792)
+.. ..+.+++.++++.+++.... |.|+.++.. ++...... .-...+.|+|+|+++.|+.+..
T Consensus 76 ~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~lyv~ds 153 (246)
T PF08450_consen 76 ADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGFPNGIAFSPDGKTLYVADS 153 (246)
T ss_dssp EEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EESSEEEEEEETTSSEEEEEET
T ss_pred eeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-CcccccceEECCcchheeeccc
Confidence 332 24568899998855555442 568888888 55443333 2355789999999997775554
Q ss_pred C--eEEEEECCCCCC-c---ceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEE
Q 003840 700 D--SVRVWTVGSGSE-G---ECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAV 772 (792)
Q Consensus 700 d--~I~IwDl~s~~~-~---~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~~~~h~~~V~sl~f 772 (792)
. .|..|++..... . ..+..+.........+++..+|+.+++....+.|.++|.+ ++.+ .+......+++++|
T Consensus 154 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~f 232 (246)
T PF08450_consen 154 FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAF 232 (246)
T ss_dssp TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEE
T ss_pred ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEE
Confidence 4 888888864322 1 2222333333458889999999987777788999999988 6655 34333458999999
Q ss_pred e-CCCCEEEEE
Q 003840 773 S-TETGYVASA 782 (792)
Q Consensus 773 s-pdg~~LaSg 782 (792)
. ++.+.|+..
T Consensus 233 gg~~~~~L~vT 243 (246)
T PF08450_consen 233 GGPDGKTLYVT 243 (246)
T ss_dssp ESTTSSEEEEE
T ss_pred ECCCCCEEEEE
Confidence 4 565555443
No 290
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.91 E-value=5.7e-07 Score=101.15 Aligned_cols=252 Identities=11% Similarity=0.013 Sum_probs=155.2
Q ss_pred CCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEecccCCCe---
Q 003840 524 GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASV--- 600 (792)
Q Consensus 524 g~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V--- 600 (792)
+..++.++.+|.|+.+|.++|+.+-.............. .+..+++++.++.|+.+|..+ ++.+..+......+
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v--~~~~v~v~~~~g~l~ald~~t-G~~~W~~~~~~~~~~~~ 196 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVV--SDGLVLVHTSNGMLQALNESD-GAVKWTVNLDVPSLTLR 196 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEE--ECCEEEEECCCCEEEEEEccC-CCEeeeecCCCCccccc
Confidence 457778888999999999999988777643321111112 244677788899999999988 55554443211100
Q ss_pred --EEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCCe----------eEEEEec--CCCEEEEEEcCCeEEEEEC
Q 003840 601 --MSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGT----------AQMRFQP--HLGRYLAAAAENVVSILDA 666 (792)
Q Consensus 601 --~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~----------~~v~~sp--~~~~lla~s~dg~I~i~D~ 666 (792)
.+.... +. .++.++.+|.+..+|..+++.+..+.... ..+..+| .++.+++++.++.+..+|.
T Consensus 197 ~~~sP~v~--~~-~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~ 273 (394)
T PRK11138 197 GESAPATA--FG-GAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDL 273 (394)
T ss_pred CCCCCEEE--CC-EEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEEC
Confidence 111111 22 34467779999999999988765543110 0011111 3577888888999999999
Q ss_pred CCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecC-CCceEEEEEeCCCCEEEEEEcC
Q 003840 667 ETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCN-GNKFHSCVFHPTYPSLLVIGCY 744 (792)
Q Consensus 667 ~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~-~~~i~si~fspdg~~L~sgs~d 744 (792)
.+++.+...... ....+.. .+..|+.++.+ .+..+|..+++ .+...... .....+.++ .+.+|++++.+
T Consensus 274 ~tG~~~W~~~~~--~~~~~~~--~~~~vy~~~~~g~l~ald~~tG~---~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~ 344 (394)
T PRK11138 274 RSGQIVWKREYG--SVNDFAV--DGGRIYLVDQNDRVYALDTRGGV---ELWSQSDLLHRLLTAPVL--YNGYLVVGDSE 344 (394)
T ss_pred CCCCEEEeecCC--CccCcEE--ECCEEEEEcCCCeEEEEECCCCc---EEEcccccCCCcccCCEE--ECCEEEEEeCC
Confidence 999887665421 1112222 34556666656 99999998773 33222111 111222222 25678899999
Q ss_pred CeEEEEECCCCcEEE-EcccCCCeE-EEEEeCCCCEEEEEeCCCcEEEeC
Q 003840 745 QSLELWNMSENKTMT-LTAHEGLIA-ALAVSTETGYVASASHDKFVKLWK 792 (792)
Q Consensus 745 g~I~IwDl~~~~~~~-~~~h~~~V~-sl~fspdg~~LaSgs~DG~I~IWd 792 (792)
|.|+++|..+++.+. .......+. ...+ .+..|+.++.||.|+.++
T Consensus 345 G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~ 392 (394)
T PRK11138 345 GYLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAIT 392 (394)
T ss_pred CEEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEEe
Confidence 999999999999873 322222232 2233 244788889999998764
No 291
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.90 E-value=1.9e-08 Score=111.96 Aligned_cols=230 Identities=16% Similarity=0.191 Sum_probs=164.7
Q ss_pred CCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCc--------------eeEEecccCCCeEEEEEcCCCCeEEEEEeC
Q 003840 553 HSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGY--------------SLRTFMGHSASVMSLDFHPNKDDLICSCDG 618 (792)
Q Consensus 553 h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~--------------~i~~~~~h~~~V~sl~fspd~~~ll~sgs~ 618 (792)
......|+.|+.+..+|++|+.||.++|..+.+... .-.++.+|...|.-+.|+.... -+.+.+.
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~Q-KLTtSDt 91 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQ-KLTTSDT 91 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccc-cccccCC
Confidence 345688999999999999999999999998875221 1246679999999999998755 4558889
Q ss_pred CCcEEEEEcCCCeeEEE-----eeCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEE-EEecCCCCCeEEEEEcCCCC
Q 003840 619 DGEIRYWSINNGSCTRV-----FKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACR-LSLQGHTKPIDSVCWDPSGE 692 (792)
Q Consensus 619 Dg~I~iwdl~~~~~~~~-----~~~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~-~~l~~h~~~V~sv~~spdg~ 692 (792)
+|.|.+|-+-.+..... -+..+.+++|..+|.++..+..||.|.|=.++..+.- +.+++ .-...+.|++|.+
T Consensus 92 ~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg--~~l~hv~ws~D~~ 169 (1189)
T KOG2041|consen 92 SGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKG--QLLAHVLWSEDLE 169 (1189)
T ss_pred CceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcch--heccceeecccHH
Confidence 99999999887764332 2345678999999999999999999988777654322 11222 2244688999998
Q ss_pred EEEEEeCC-eEEEEECCCCCC----cceE----EEeecCCCceEEEEE--------eCCCCEEEEEEcCCeEEEEECCCC
Q 003840 693 LLASVSED-SVRVWTVGSGSE----GECV----HELSCNGNKFHSCVF--------HPTYPSLLVIGCYQSLELWNMSEN 755 (792)
Q Consensus 693 ~Las~s~d-~I~IwDl~s~~~----~~~i----~~~~~~~~~i~si~f--------spdg~~L~sgs~dg~I~IwDl~~~ 755 (792)
.++.+-.+ .+.+||....-. ..+. ..+......|..+.| -||.+.|+++-..|.+.|..-.+.
T Consensus 170 ~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND 249 (1189)
T KOG2041|consen 170 QALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSEND 249 (1189)
T ss_pred HHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCC
Confidence 77777666 899998753211 1111 112222334555665 358889999999999988765444
Q ss_pred cEEEEcccCCCeEEEEEeCCCCEEEEEeCC
Q 003840 756 KTMTLTAHEGLIAALAVSTETGYVASASHD 785 (792)
Q Consensus 756 ~~~~~~~h~~~V~sl~fspdg~~LaSgs~D 785 (792)
..-.+....-.|..+.|+++|..||.||.|
T Consensus 250 ~~Pvv~dtgm~~vgakWnh~G~vLAvcG~~ 279 (1189)
T KOG2041|consen 250 PEPVVVDTGMKIVGAKWNHNGAVLAVCGND 279 (1189)
T ss_pred CCCeEEecccEeecceecCCCcEEEEccCc
Confidence 333333334678899999999999999865
No 292
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.90 E-value=4.3e-09 Score=117.53 Aligned_cols=217 Identities=20% Similarity=0.294 Sum_probs=156.3
Q ss_pred ceeccCCcceeeeeeeecCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEECCCCc-eeEEeccCCCCEEEEEECCCCCeEE
Q 003840 493 GMDVSQGFSFKEANSVRASTSKVICCHFSSDG-KLLATGGHDKKAVLWHTDTLK-SKTNLEEHSSLITDVRFSPSMPRLA 570 (792)
Q Consensus 493 ~~d~~~~~~~~~~~~l~~H~~~V~~lafspdg-~~Lasgs~Dg~I~vWdl~t~~-~~~~l~~h~~~V~~i~fspdg~~La 570 (792)
+|.+.+...-..-..+.+|...|+.+.|.+.. ..||+++.|-.|..||+.+.. .+..+..-...-..|+|+.....+.
T Consensus 95 iwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vl 174 (1081)
T KOG0309|consen 95 IWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVL 174 (1081)
T ss_pred hhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchh
Confidence 45555554445556788999999999999844 589999999999999998754 3444444455667899998666777
Q ss_pred EEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEE----eeCCeeEEEEe
Q 003840 571 TSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV----FKGGTAQMRFQ 646 (792)
Q Consensus 571 sgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~----~~~~~~~v~~s 646 (792)
+.+....|+|||++.++.++..+++|...|+.++|.......+.+++.|++|++||......... .+.++..-++.
T Consensus 175 asshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~ 254 (1081)
T KOG0309|consen 175 ASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYL 254 (1081)
T ss_pred hhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceecccc
Confidence 77778889999999988999999999999999999876556677999999999999876443221 12334444555
Q ss_pred cCCCEEEEEEc--CCeEEE---------EECCC-CeEEEEecCCCCCeEEEEEcC--------CC--CEEEEEeCC-eEE
Q 003840 647 PHLGRYLAAAA--ENVVSI---------LDAET-QACRLSLQGHTKPIDSVCWDP--------SG--ELLASVSED-SVR 703 (792)
Q Consensus 647 p~~~~lla~s~--dg~I~i---------~D~~t-~~~~~~l~~h~~~V~sv~~sp--------dg--~~Las~s~d-~I~ 703 (792)
|-+.-++.--. +..|.+ |+..+ ..++++|.+|...|...-|-. |. --|++=+.| .++
T Consensus 255 Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lr 334 (1081)
T KOG0309|consen 255 PFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLR 334 (1081)
T ss_pred ccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceE
Confidence 55443332221 223333 33333 367899999999887666643 21 258888999 999
Q ss_pred EEECCC
Q 003840 704 VWTVGS 709 (792)
Q Consensus 704 IwDl~s 709 (792)
+|-+.+
T Consensus 335 lWpI~~ 340 (1081)
T KOG0309|consen 335 LWPIDS 340 (1081)
T ss_pred eeeccH
Confidence 998854
No 293
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.90 E-value=1.5e-06 Score=91.42 Aligned_cols=244 Identities=15% Similarity=0.127 Sum_probs=162.3
Q ss_pred eEEEEEcC-CCCEEEEEeCCCe-EEEEECCCCceeEEeccCCCCE--EEEEECCCCCeEEEEe-----CCCcEEEEeCCC
Q 003840 515 VICCHFSS-DGKLLATGGHDKK-AVLWHTDTLKSKTNLEEHSSLI--TDVRFSPSMPRLATSS-----FDKTVRVWDADN 585 (792)
Q Consensus 515 V~~lafsp-dg~~Lasgs~Dg~-I~vWdl~t~~~~~~l~~h~~~V--~~i~fspdg~~Lasgs-----~Dg~V~IWdl~s 585 (792)
...++.+| ++..+|.+-.-|. ..+||..+++....+....+.- -.-+|++||++|++.- ..|.|-|||...
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~ 86 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAAR 86 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcC
Confidence 45678888 5556677766654 6789999999887776433322 2458999999999874 358899999996
Q ss_pred CCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCCeeEEEEecCCCEEEEEEcCCeEEEEE
Q 003840 586 PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILD 665 (792)
Q Consensus 586 ~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~lla~s~dg~I~i~D 665 (792)
....+..|..|.-.-..|.+.||++.|++. +|-|..- .++++ .++=..+.+..+.+.|
T Consensus 87 ~~~ri~E~~s~GIGPHel~l~pDG~tLvVA---NGGI~Th-pd~GR------------------~kLNl~tM~psL~~ld 144 (305)
T PF07433_consen 87 GYRRIGEFPSHGIGPHELLLMPDGETLVVA---NGGIETH-PDSGR------------------AKLNLDTMQPSLVYLD 144 (305)
T ss_pred CcEEEeEecCCCcChhhEEEcCCCCEEEEE---cCCCccC-cccCc------------------eecChhhcCCceEEEe
Confidence 567788888888778889999999777644 2323211 00111 1122233455667778
Q ss_pred CCCCeEEEE--e--cCCCCCeEEEEEcCCCCEEEEEeCC--------eEEEEECCCCCCcceEE----EeecCCCceEEE
Q 003840 666 AETQACRLS--L--QGHTKPIDSVCWDPSGELLASVSED--------SVRVWTVGSGSEGECVH----ELSCNGNKFHSC 729 (792)
Q Consensus 666 ~~t~~~~~~--l--~~h~~~V~sv~~spdg~~Las~s~d--------~I~IwDl~s~~~~~~i~----~~~~~~~~i~si 729 (792)
..+++.+.. + ..|...|..+++..+|..++.+-.. -|.+++.... ...+. ....-.+.+-+|
T Consensus 145 ~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~--~~~~~~p~~~~~~l~~Y~gSI 222 (305)
T PF07433_consen 145 ARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGA--LRLLPAPEEQWRRLNGYIGSI 222 (305)
T ss_pred cCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCc--ceeccCChHHHHhhCCceEEE
Confidence 888887766 3 2377789999999999877765321 2455544321 11111 112335679999
Q ss_pred EEeCCCCEEEEEEcC-CeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEeC
Q 003840 730 VFHPTYPSLLVIGCY-QSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASH 784 (792)
Q Consensus 730 ~fspdg~~L~sgs~d-g~I~IwDl~~~~~~~~~~h~~~V~sl~fspdg~~LaSgs~ 784 (792)
+++.++.++++.+-. +.+.+||..+++.+....-. .+..++...++ ++++.+.
T Consensus 223 a~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~-D~cGva~~~~~-f~~ssG~ 276 (305)
T PF07433_consen 223 AADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLP-DACGVAPTDDG-FLVSSGQ 276 (305)
T ss_pred EEeCCCCEEEEECCCCCEEEEEECCCCCEeeccccC-ceeeeeecCCc-eEEeCCC
Confidence 999999988777655 59999999999988544333 35667766666 6665543
No 294
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.89 E-value=1.1e-08 Score=104.19 Aligned_cols=234 Identities=17% Similarity=0.289 Sum_probs=145.6
Q ss_pred CCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCc----eeEEecccC------------CCeEEEEEcCC-CCeEEEE
Q 003840 553 HSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGY----SLRTFMGHS------------ASVMSLDFHPN-KDDLICS 615 (792)
Q Consensus 553 h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~----~i~~~~~h~------------~~V~sl~fspd-~~~ll~s 615 (792)
....|+++.|...|.||++|...|.|.+|.-+.... .+..|.+|. ..|..|.|..+ +..-++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 456799999999999999999999999998765331 122344443 34778888654 3334556
Q ss_pred EeCCCcEEEEEcCCCeeEEEeeCCeeEEEEecCCCEEEEEE--------c-CCeEEEEECCCCeEEEEecCCCCCeEEEE
Q 003840 616 CDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAA--------A-ENVVSILDAETQACRLSLQGHTKPIDSVC 686 (792)
Q Consensus 616 gs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~lla~s--------~-dg~I~i~D~~t~~~~~~l~~h~~~V~sv~ 686 (792)
.+.|.+|++|.+........-......-.-+|.++-+.+.. . |..|..+ .+...-..|...|.++.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~-----p~rvyaNaH~yhiNSiS 179 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAK-----PCRVYANAHPYHINSIS 179 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEec-----cceeccccceeEeeeee
Confidence 77899999999976543222111111111112221111100 0 1111111 01111245888899999
Q ss_pred EcCCCCEEEEEeCCeEEEEECCCCCCcceEEEeecCC-----CceEEEEEeCCC-CEEEEEEcCCeEEEEECCCCc----
Q 003840 687 WDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNG-----NKFHSCVFHPTY-PSLLVIGCYQSLELWNMSENK---- 756 (792)
Q Consensus 687 ~spdg~~Las~s~d~I~IwDl~s~~~~~~i~~~~~~~-----~~i~si~fspdg-~~L~sgs~dg~I~IwDl~~~~---- 756 (792)
|..|...++++.+=.|.+|++......-.+..++.+. ..|++..|+|.. ..+...+..|.|++-|++...
T Consensus 180 ~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn 259 (460)
T COG5170 180 FNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDN 259 (460)
T ss_pred ecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccC
Confidence 9999888876544499999987544333334444443 237888999965 556677778999999998322
Q ss_pred -EE----E--------EcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003840 757 -TM----T--------LTAHEGLIAALAVSTETGYVASASHDKFVKLWK 792 (792)
Q Consensus 757 -~~----~--------~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd 792 (792)
+. . +.+-...|..+.|+++|+||++-+ =-+|+|||
T Consensus 260 ~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd-yltvkiwD 307 (460)
T COG5170 260 SKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD-YLTVKIWD 307 (460)
T ss_pred chhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec-cceEEEEe
Confidence 11 1 112235788999999999998654 35799997
No 295
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=1.8e-08 Score=107.33 Aligned_cols=291 Identities=15% Similarity=0.106 Sum_probs=186.6
Q ss_pred CCCCCCcceeccCCcceeeeeeeecCCCCeEEEEEcCCCCEEEEEeC-CCeEEEEECCCCceeEEecc--CCCCEEEEEE
Q 003840 486 PRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGH-DKKAVLWHTDTLKSKTNLEE--HSSLITDVRF 562 (792)
Q Consensus 486 ~~d~~~~~~d~~~~~~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~-Dg~I~vWdl~t~~~~~~l~~--h~~~V~~i~f 562 (792)
+.|+..+-|......-.+.++.++.|...|.+++.+-||.++++++. |..+++||+++...+.-++. -.+.+.+ ..
T Consensus 27 SlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~w-v~ 105 (558)
T KOG0882|consen 27 SLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEW-VT 105 (558)
T ss_pred ecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCCceEE-ec
Confidence 34555566655544455677889999999999999999999999887 99999999988766543332 2222222 22
Q ss_pred CCCC-C-eEEE-EeCCCcEEEEeCCCCCcee-EEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCC------Cee
Q 003840 563 SPSM-P-RLAT-SSFDKTVRVWDADNPGYSL-RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN------GSC 632 (792)
Q Consensus 563 spdg-~-~Las-gs~Dg~V~IWdl~s~~~~i-~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~------~~~ 632 (792)
++.. . .|++ .-.++.|.|+|-..+.... ..-.-|..+|.++.+.+.++. +++....|.|..|.... .+.
T Consensus 106 skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds-~vSiD~~gmVEyWs~e~~~qfPr~~l 184 (558)
T KOG0882|consen 106 SKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDS-AVSIDISGMVEYWSAEGPFQFPRTNL 184 (558)
T ss_pred CCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccc-eeeccccceeEeecCCCcccCccccc
Confidence 3321 1 3333 3457889999987655333 333458999999999998764 44888889999999873 211
Q ss_pred EEEe------------eCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC
Q 003840 633 TRVF------------KGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED 700 (792)
Q Consensus 633 ~~~~------------~~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d 700 (792)
...+ +....++.|+|++..+...+.|..|++++.++++.+..+......-.+ -+...
T Consensus 185 ~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~---q~ks~-------- 253 (558)
T KOG0882|consen 185 NFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQY---QPKSP-------- 253 (558)
T ss_pred cccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhh---ccccc--------
Confidence 1111 335677999999999999999999999999999988777642221111 11111
Q ss_pred eEEEEECCCCCCcceEEEeecCC-CceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEcccCCCeEE----------
Q 003840 701 SVRVWTVGSGSEGECVHELSCNG-NKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAA---------- 769 (792)
Q Consensus 701 ~I~IwDl~s~~~~~~i~~~~~~~-~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~~~~~h~~~V~s---------- 769 (792)
+.+-++.-+.....-+++..++ .....++|...+++|+.++--| |+|+++.++++....+....|.-
T Consensus 254 -y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~gk~e~ir~~~~sl~q~~~ 331 (558)
T KOG0882|consen 254 -YGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRILGKDEAIRFTRLSLYQGAQ 331 (558)
T ss_pred -cccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEEeccchhhhhhhHHHHhhhh
Confidence 1111111111111112222222 2356778999999998887654 88899998887755543332221
Q ss_pred ----------------EEEeCCCCEEEEEeCCCcEEEe
Q 003840 770 ----------------LAVSTETGYVASASHDKFVKLW 791 (792)
Q Consensus 770 ----------------l~fspdg~~LaSgs~DG~I~IW 791 (792)
+.+-+|-.+++++-...++++|
T Consensus 332 k~~~~~~~~~a~~np~~~~~~dpt~~c~a~kk~rfylf 369 (558)
T KOG0882|consen 332 KSNLAALEVAASNNPLLEFQKDPTIVCTAFKKNRFYLF 369 (558)
T ss_pred hccchhhhhhhccCcccccCCCCeEEEeeeecceEEEE
Confidence 2244555566666666666665
No 296
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.84 E-value=3.3e-07 Score=92.14 Aligned_cols=197 Identities=11% Similarity=0.059 Sum_probs=130.0
Q ss_pred CCcEEEEeCCCCCceeEEecccCCCeEEEEEcCC----CCeEEEEEeCCCcEEEEEcCCCeeEE-EeeCCeeEEE----E
Q 003840 575 DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPN----KDDLICSCDGDGEIRYWSINNGSCTR-VFKGGTAQMR----F 645 (792)
Q Consensus 575 Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd----~~~ll~sgs~Dg~I~iwdl~~~~~~~-~~~~~~~~v~----~ 645 (792)
...|.+|++.+..+.+..+. ..+.|.|. ...+|+.|+..|.+.+|...+..... ........+. +
T Consensus 51 t~sv~i~~~y~N~~~iv~~y------~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~ 124 (344)
T KOG4532|consen 51 TISVPINSHYSNPKGIVEFY------TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRY 124 (344)
T ss_pred eeeeEeccccCCchhhEEee------ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhhh
Confidence 34578888876443232222 23444432 23467788899999999998655332 2222222221 2
Q ss_pred ecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCC
Q 003840 646 QPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGN 724 (792)
Q Consensus 646 sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~ 724 (792)
......++.++.|.++++++++.+..........-.+.++.+++|++++++.++. .|..|.+....+............
T Consensus 125 cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D 204 (344)
T KOG4532|consen 125 CDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSD 204 (344)
T ss_pred cccccceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCC
Confidence 2223457778888888888877654433332222338899999999999999988 899999876543222223333444
Q ss_pred ceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE------EEcccCCCeEEEEEeCCCC
Q 003840 725 KFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM------TLTAHEGLIAALAVSTETG 777 (792)
Q Consensus 725 ~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~------~~~~h~~~V~sl~fspdg~ 777 (792)
.-.+..|+.....+|++..||++.|||++..... ....|.+.|..+.|++.|.
T Consensus 205 ~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~ 263 (344)
T KOG4532|consen 205 HGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGL 263 (344)
T ss_pred CceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCc
Confidence 5567789999999999999999999999875433 3346899999999998553
No 297
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.83 E-value=7.5e-07 Score=100.19 Aligned_cols=255 Identities=10% Similarity=0.077 Sum_probs=151.9
Q ss_pred CCEEEEEeCCCeEEEEECCCCceeEEeccCCC--CEE-----EEEECC--CCCeEEEEeCCCcEEEEeCCCCCceeEEec
Q 003840 524 GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSS--LIT-----DVRFSP--SMPRLATSSFDKTVRVWDADNPGYSLRTFM 594 (792)
Q Consensus 524 g~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~--~V~-----~i~fsp--dg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~ 594 (792)
+..+++++.+|.|..+|.++|+.+-....... .+. .+.-.| ++..++.++.+|.++.+|.++ ++.+....
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~t-G~~~W~~~ 147 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAED-GEVAWQTK 147 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCC-CCCccccc
Confidence 55777888889999999999988776543220 000 000011 355788888999999999988 44444443
Q ss_pred ccCCCeEE-EEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCCeeEEE----Eec--CCCEEEEEEcCCeEEEEECC
Q 003840 595 GHSASVMS-LDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMR----FQP--HLGRYLAAAAENVVSILDAE 667 (792)
Q Consensus 595 ~h~~~V~s-l~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~----~sp--~~~~lla~s~dg~I~i~D~~ 667 (792)
... .+.+ ..+. + . .++.+..++.|..+|.++|+.+..+......+. .+| .++.+++++.++.+..+|..
T Consensus 148 ~~~-~~~ssP~v~-~-~-~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~ 223 (394)
T PRK11138 148 VAG-EALSRPVVS-D-G-LVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLME 223 (394)
T ss_pred CCC-ceecCCEEE-C-C-EEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEEcc
Confidence 222 2222 2222 2 3 344677799999999999998877754321110 011 24568888889999999999
Q ss_pred CCeEEEEecCCCC-------CeEEEEEcC--CCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCE
Q 003840 668 TQACRLSLQGHTK-------PIDSVCWDP--SGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPS 737 (792)
Q Consensus 668 t~~~~~~l~~h~~-------~V~sv~~sp--dg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~ 737 (792)
+++.+........ ....+..+| .+..++.++.+ .+..+|..+++ .+...... ....+. ..+..
T Consensus 224 ~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~---~~W~~~~~--~~~~~~--~~~~~ 296 (394)
T PRK11138 224 QGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQ---IVWKREYG--SVNDFA--VDGGR 296 (394)
T ss_pred CChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCC---EEEeecCC--CccCcE--EECCE
Confidence 9987765432110 011111122 23445555555 89999998873 33322211 111122 24667
Q ss_pred EEEEEcCCeEEEEECCCCcEEEEc-cc-CCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003840 738 LLVIGCYQSLELWNMSENKTMTLT-AH-EGLIAALAVSTETGYVASASHDKFVKLWK 792 (792)
Q Consensus 738 L~sgs~dg~I~IwDl~~~~~~~~~-~h-~~~V~sl~fspdg~~LaSgs~DG~I~IWd 792 (792)
|++++.+|.|+.+|..+++.+... .. .....+..+ .+.+|+.++.||.|+++|
T Consensus 297 vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld 351 (394)
T PRK11138 297 IYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWIN 351 (394)
T ss_pred EEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEE
Confidence 888999999999999999876321 11 111222222 245677778888877654
No 298
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.80 E-value=1.8e-08 Score=109.11 Aligned_cols=203 Identities=19% Similarity=0.296 Sum_probs=143.9
Q ss_pred eEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCc------eeEEecccCCCeEEEEEcCCCCeEEEEEeCCC
Q 003840 547 KTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGY------SLRTFMGHSASVMSLDFHPNKDDLICSCDGDG 620 (792)
Q Consensus 547 ~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~------~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg 620 (792)
+..+.+|...|..|+-..+.+-+++++.|++|++|.++.++. +..++..|+.+|.++.|..+.. .+++| ||
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr-~i~Sc--D~ 804 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLR-SIASC--DG 804 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccc-eeeec--cC
Confidence 345678999999998888888999999999999999986442 4567889999999999998754 44454 99
Q ss_pred cEEEEEcCCCeeEEEee-----CCeeEEEEec--CCCEEEEE-EcCCeEEEEECCCCeEEEEecC-----CCCCeEEEEE
Q 003840 621 EIRYWSINNGSCTRVFK-----GGTAQMRFQP--HLGRYLAA-AAENVVSILDAETQACRLSLQG-----HTKPIDSVCW 687 (792)
Q Consensus 621 ~I~iwdl~~~~~~~~~~-----~~~~~v~~sp--~~~~lla~-s~dg~I~i~D~~t~~~~~~l~~-----h~~~V~sv~~ 687 (792)
.|.+||.--++.+.... +....+...+ +...++++ +.+.+|+++|.+..+....++. ...-+++++.
T Consensus 805 giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaV 884 (1034)
T KOG4190|consen 805 GIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAV 884 (1034)
T ss_pred cceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEe
Confidence 99999987776554221 2223333333 33344555 4588999999999876666543 3355899999
Q ss_pred cCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEE-EECCCCc
Q 003840 688 DPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLEL-WNMSENK 756 (792)
Q Consensus 688 spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~I-wDl~~~~ 756 (792)
.+.|++++.+-.+ +|.+.|.+++ +.+..+.........++ .|....++....|.++.| |...++.
T Consensus 885 a~~GN~lAa~LSnGci~~LDaR~G---~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldgi 951 (1034)
T KOG4190|consen 885 ADKGNKLAAALSNGCIAILDARNG---KVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDGI 951 (1034)
T ss_pred ccCcchhhHHhcCCcEEEEecCCC---ceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCCe
Confidence 9999999988766 9999999988 44544433332222222 244455666677777777 7665554
No 299
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=4.1e-07 Score=96.22 Aligned_cols=248 Identities=15% Similarity=0.179 Sum_probs=147.2
Q ss_pred EEEEECCCCceeEEeccCCCCEEEEEECCCCC-eEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEE
Q 003840 536 AVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP-RLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLIC 614 (792)
Q Consensus 536 I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~-~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~ 614 (792)
|++.+..+.+....+..|...|.+++|+|..+ ++..++.+..|+|.|+++ ...+..+..+ ..+++++|.-+..++|+
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet-~~~vssy~a~-~~~wSC~wDlde~h~IY 252 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLET-SCVVSSYIAY-NQIWSCCWDLDERHVIY 252 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEeccc-ceeeeheecc-CCceeeeeccCCcceeE
Confidence 55666666666667778899999999999777 889999999999999998 6667777766 78999999999999999
Q ss_pred EEeCCCcEEEEEcCCCeeEE-Eee-----CCeeEE------EEecCCCEEEEEEcCCeEEEEECC----CCeEEEEecCC
Q 003840 615 SCDGDGEIRYWSINNGSCTR-VFK-----GGTAQM------RFQPHLGRYLAAAAENVVSILDAE----TQACRLSLQGH 678 (792)
Q Consensus 615 sgs~Dg~I~iwdl~~~~~~~-~~~-----~~~~~v------~~sp~~~~lla~s~dg~I~i~D~~----t~~~~~~l~~h 678 (792)
.|...|.|.|||++..+-.. .+. .++..+ ...+.++.+++...+ +..|+.. ..-++..+. .
T Consensus 253 aGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele-~ 329 (463)
T KOG1645|consen 253 AGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELE-P 329 (463)
T ss_pred EeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccC-C
Confidence 99999999999998654221 111 112222 223333444433332 2333322 222222222 2
Q ss_pred CCCeEEEEEcCCCCEEE-EEeCC----eEEE----EECCCCCCcceEEEe-ecC-CCc------eEEEEEeCCCCEEEEE
Q 003840 679 TKPIDSVCWDPSGELLA-SVSED----SVRV----WTVGSGSEGECVHEL-SCN-GNK------FHSCVFHPTYPSLLVI 741 (792)
Q Consensus 679 ~~~V~sv~~spdg~~La-s~s~d----~I~I----wDl~s~~~~~~i~~~-~~~-~~~------i~si~fspdg~~L~sg 741 (792)
.+...++.+++..+.++ +.-.+ .++. .|..++ ..+... ..+ +.+ -..+.-.++..+|+..
T Consensus 330 pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG---~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~ 406 (463)
T KOG1645|consen 330 PGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDG---FPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVV 406 (463)
T ss_pred CcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccC---ceeeeecccccCCcccccccccceeccccccEEEEe
Confidence 34444555555444333 32221 1111 111111 111100 011 111 1112223455555544
Q ss_pred Ec-CCeEEEEECCCCcEEEEcccCCCeEEEEEeC--CCCEEEEEeCCCcEEEeC
Q 003840 742 GC-YQSLELWNMSENKTMTLTAHEGLIAALAVST--ETGYVASASHDKFVKLWK 792 (792)
Q Consensus 742 s~-dg~I~IwDl~~~~~~~~~~h~~~V~sl~fsp--dg~~LaSgs~DG~I~IWd 792 (792)
+. .+.+.+||..+.+.+.-..-..+|.+++... .+.||++- .|..++||+
T Consensus 407 gd~tn~lil~D~~s~evvQ~l~~~epv~Dicp~~~n~~syLa~L-Td~~v~Iyk 459 (463)
T KOG1645|consen 407 GDSTNELILQDPHSFEVVQTLALSEPVLDICPNDTNGSSYLALL-TDDRVHIYK 459 (463)
T ss_pred cCCcceeEEeccchhheeeecccCcceeecceeecCCcchhhhe-ecceEEEEe
Confidence 43 4699999999999886666668888887654 23466665 466788774
No 300
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.75 E-value=4.5e-08 Score=103.58 Aligned_cols=118 Identities=21% Similarity=0.282 Sum_probs=88.5
Q ss_pred EEEEcCCCCEEEE---EeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEe
Q 003840 517 CCHFSSDGKLLAT---GGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTF 593 (792)
Q Consensus 517 ~lafspdg~~Las---gs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~ 593 (792)
++.|..+...+.+ .+....+.+|....+.. ..+-+|-..+++|+|+||+.+|+++..|..|+|-.+......-..+
T Consensus 112 ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~-~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesfc 190 (390)
T KOG3914|consen 112 AISFIREDTSVLVADKAGDVYSFDILSADSGRC-EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFC 190 (390)
T ss_pred eeeeeeccceEEEEeecCCceeeeeecccccCc-chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhc
Confidence 3334443433333 44455566666665433 3445899999999999999999999999999998887633333445
Q ss_pred cccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee
Q 003840 594 MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK 637 (792)
Q Consensus 594 ~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~ 637 (792)
.||+..|..++..++ ++|++++.|++|++||+++++++..+.
T Consensus 191 lGH~eFVS~isl~~~--~~LlS~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 191 LGHKEFVSTISLTDN--YLLLSGSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred cccHhheeeeeeccC--ceeeecCCCCcEEEEecccCCcccccc
Confidence 689999999999876 457799999999999999999886654
No 301
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.74 E-value=6.2e-06 Score=84.53 Aligned_cols=226 Identities=18% Similarity=0.174 Sum_probs=132.9
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCC--ceeEEec---cCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeE
Q 003840 517 CCHFSSDGKLLATGGHDKKAVLWHTDTL--KSKTNLE---EHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLR 591 (792)
Q Consensus 517 ~lafspdg~~Lasgs~Dg~I~vWdl~t~--~~~~~l~---~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~ 591 (792)
.++.+.||++||+.- |..|.|=..++. ..+.+.. ...-.=+.++|+||+.+||.+...|+|+|||+.. ..+.
T Consensus 2 ~~~~~~~Gk~lAi~q-d~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g--~~lf 78 (282)
T PF15492_consen 2 HLALSSDGKLLAILQ-DQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG--SELF 78 (282)
T ss_pred ceeecCCCcEEEEEe-ccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccc--ceeE
Confidence 356788999888874 556666544321 1222222 2233456899999999999999999999999974 2232
Q ss_pred Eecc-------cCCCeEEEEEcCCC-----CeEEEEEeCCCcEEEEEcCCC-----eeEEEe------eCCeeEEEEecC
Q 003840 592 TFMG-------HSASVMSLDFHPNK-----DDLICSCDGDGEIRYWSINNG-----SCTRVF------KGGTAQMRFQPH 648 (792)
Q Consensus 592 ~~~~-------h~~~V~sl~fspd~-----~~ll~sgs~Dg~I~iwdl~~~-----~~~~~~------~~~~~~v~~sp~ 648 (792)
.+.. ....|..+.|.+.. ...|++-..+|.++-|-+..+ .....| ..++..+.++|.
T Consensus 79 ~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~ 158 (282)
T PF15492_consen 79 VIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPK 158 (282)
T ss_pred EcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCC
Confidence 2221 23557777775542 223445666888887776332 222222 357888999999
Q ss_pred CCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCE--EEEEeCCe-------EEEEECCCCCCcceEEEe
Q 003840 649 LGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGEL--LASVSEDS-------VRVWTVGSGSEGECVHEL 719 (792)
Q Consensus 649 ~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~--Las~s~d~-------I~IwDl~s~~~~~~i~~~ 719 (792)
...|++++....= ++. -.+....+++-..-.+..+ .++..++. ..+|.+-+. +.....
T Consensus 159 h~LLlVgG~~~~~------~~~----s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~---~~fs~~ 225 (282)
T PF15492_consen 159 HRLLLVGGCEQNQ------DGM----SKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSF---KFFSRQ 225 (282)
T ss_pred CCEEEEeccCCCC------Ccc----ccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccce---eeeecc
Confidence 8888887763320 000 0011112222222111111 11122221 123333211 222222
Q ss_pred ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE
Q 003840 720 SCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM 758 (792)
Q Consensus 720 ~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~ 758 (792)
......|..+..+|||..|++...+|.|.+|++...+..
T Consensus 226 ~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~ 264 (282)
T PF15492_consen 226 GQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQ 264 (282)
T ss_pred ccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhh
Confidence 334677999999999999999999999999999887655
No 302
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.71 E-value=2.8e-06 Score=88.01 Aligned_cols=208 Identities=14% Similarity=0.115 Sum_probs=130.6
Q ss_pred CCcEEEEeCCCCCceeEEeccc--CCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCC--eeEEEEecCCC
Q 003840 575 DKTVRVWDADNPGYSLRTFMGH--SASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG--TAQMRFQPHLG 650 (792)
Q Consensus 575 Dg~V~IWdl~s~~~~i~~~~~h--~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~--~~~v~~sp~~~ 650 (792)
+|.|..||..+ ++.+....-. .....+..+ ++++.++ +++.++.|+.||+.+|+.+..+... .... ....++
T Consensus 2 ~g~l~~~d~~t-G~~~W~~~~~~~~~~~~~~~~-~~~~~v~-~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~-~~~~~~ 77 (238)
T PF13360_consen 2 DGTLSALDPRT-GKELWSYDLGPGIGGPVATAV-PDGGRVY-VASGDGNLYALDAKTGKVLWRFDLPGPISGA-PVVDGG 77 (238)
T ss_dssp TSEEEEEETTT-TEEEEEEECSSSCSSEEETEE-EETTEEE-EEETTSEEEEEETTTSEEEEEEECSSCGGSG-EEEETT
T ss_pred CCEEEEEECCC-CCEEEEEECCCCCCCccceEE-EeCCEEE-EEcCCCEEEEEECCCCCEEEEeeccccccce-eeeccc
Confidence 68899999987 5555544321 122222222 2344444 6678999999999999988776632 1122 245567
Q ss_pred EEEEEEcCCeEEEEECCCCeEEEEe-cCCCC---CeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCc
Q 003840 651 RYLAAAAENVVSILDAETQACRLSL-QGHTK---PIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNK 725 (792)
Q Consensus 651 ~lla~s~dg~I~i~D~~t~~~~~~l-~~h~~---~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~ 725 (792)
.+++++.++.|+.+|.++++.+..+ ..... .........++..++++..+ .|..+|++++ +.+.........
T Consensus 78 ~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG---~~~w~~~~~~~~ 154 (238)
T PF13360_consen 78 RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTG---KLLWKYPVGEPR 154 (238)
T ss_dssp EEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTT---EEEEEEESSTT-
T ss_pred ccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCC---cEEEEeecCCCC
Confidence 8888889999999999999998884 32211 11222233347777777755 9999999888 555555443322
Q ss_pred ----------eEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003840 726 ----------FHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 792 (792)
Q Consensus 726 ----------i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd 792 (792)
+..-.+..++ .+++++.++.+..+|+.+++.+. ......+..+ ...++..|++++.|+.|.+||
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w-~~~~~~~~~~-~~~~~~~l~~~~~~~~l~~~d 228 (238)
T PF13360_consen 155 GSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLW-SKPISGIYSL-PSVDGGTLYVTSSDGRLYALD 228 (238)
T ss_dssp SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEE-EECSS-ECEC-EECCCTEEEEEETTTEEEEEE
T ss_pred CCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEE-EecCCCccCC-ceeeCCEEEEEeCCCEEEEEE
Confidence 1122222334 78888888864444999999763 2223333332 356777888888999999886
No 303
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=5.4e-07 Score=95.32 Aligned_cols=247 Identities=12% Similarity=0.088 Sum_probs=150.5
Q ss_pred CcceeeeeeeecCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCC-eEEEEeCCC
Q 003840 499 GFSFKEANSVRASTSKVICCHFSSDGK-LLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP-RLATSSFDK 576 (792)
Q Consensus 499 ~~~~~~~~~l~~H~~~V~~lafspdg~-~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~-~Lasgs~Dg 576 (792)
..+|+....+.+|...|..++|||..+ +|..++.+.+|+|.|+++...+..+..+ ..+++++|.-|.. +|+.|-..|
T Consensus 180 ~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG 258 (463)
T KOG1645|consen 180 SHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNG 258 (463)
T ss_pred cCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCc
Confidence 344555667889999999999999877 7888999999999999999999988888 8899999988654 788888899
Q ss_pred cEEEEeCCCCCceeEEecc--cCCCeEEEEEcC------CCCeEEEEEeCCCcEEEEEcCCC----eeEEEeeCC--eeE
Q 003840 577 TVRVWDADNPGYSLRTFMG--HSASVMSLDFHP------NKDDLICSCDGDGEIRYWSINNG----SCTRVFKGG--TAQ 642 (792)
Q Consensus 577 ~V~IWdl~s~~~~i~~~~~--h~~~V~sl~fsp------d~~~ll~sgs~Dg~I~iwdl~~~----~~~~~~~~~--~~~ 642 (792)
.|.|||++.....+..+.+ ...+|..|+.-+ .+. +++.... .+.+|++... .++..++.+ ...
T Consensus 259 ~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gg-lLv~~lt--~l~f~ei~~s~~~~p~vlele~pG~cis 335 (463)
T KOG1645|consen 259 MVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGG-LLVFALT--VLQFYEIVFSAECLPCVLELEPPGICIS 335 (463)
T ss_pred eEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccc-eEEeeeh--hhhhhhhhccccCCCcccccCCCcceee
Confidence 9999999976655544443 223444444322 222 3322222 2455655422 222233322 333
Q ss_pred EEEecCCCEEEEEEcCC--------eEEEEECCCCeEEEEec-CC-CCC------eEEEEEcCCCCEEEEEeCC--eEEE
Q 003840 643 MRFQPHLGRYLAAAAEN--------VVSILDAETQACRLSLQ-GH-TKP------IDSVCWDPSGELLASVSED--SVRV 704 (792)
Q Consensus 643 v~~sp~~~~lla~s~dg--------~I~i~D~~t~~~~~~l~-~h-~~~------V~sv~~spdg~~Las~s~d--~I~I 704 (792)
+.+.+..+.+++....+ .+.-.|.+++..+...+ .+ ... -..+.-.++.++|+..+++ .+.+
T Consensus 336 mqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil 415 (463)
T KOG1645|consen 336 MQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELIL 415 (463)
T ss_pred eeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEE
Confidence 44445446666655431 11112333443332221 11 110 0112223456777766666 8999
Q ss_pred EECCCCCCcceEEEeecCCCceEEEEEeC-CCCEEEEEEcCCeEEEEECC
Q 003840 705 WTVGSGSEGECVHELSCNGNKFHSCVFHP-TYPSLLVIGCYQSLELWNMS 753 (792)
Q Consensus 705 wDl~s~~~~~~i~~~~~~~~~i~si~fsp-dg~~L~sgs~dg~I~IwDl~ 753 (792)
||..++ ..+.++... .++..++... ++.-++..-.|..++||..+
T Consensus 416 ~D~~s~---evvQ~l~~~-epv~Dicp~~~n~~syLa~LTd~~v~Iyk~e 461 (463)
T KOG1645|consen 416 QDPHSF---EVVQTLALS-EPVLDICPNDTNGSSYLALLTDDRVHIYKNE 461 (463)
T ss_pred eccchh---heeeecccC-cceeecceeecCCcchhhheecceEEEEecC
Confidence 999876 556655544 5666665443 44444444556678888654
No 304
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.67 E-value=1.1e-08 Score=116.00 Aligned_cols=201 Identities=16% Similarity=0.290 Sum_probs=148.3
Q ss_pred CCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCC-c
Q 003840 543 TLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDG-E 621 (792)
Q Consensus 543 t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg-~ 621 (792)
..+..++|..|....+|++|+-+.+.|++|+..|.|++|++.+ +.....+.+|...|+-|.-+.+|..++.+++... .
T Consensus 1090 RFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~s-G~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pl 1168 (1516)
T KOG1832|consen 1090 RFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSS-GSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPL 1168 (1516)
T ss_pred hcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccC-ccccccccccccccccccccCCcceeeeeccccCch
Confidence 3456677888999999999999999999999999999999998 6677888899999999999999988886666555 6
Q ss_pred EEEEEcCC-CeeEEEeeCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEec-C---CCCCeEEEEEcCCCCEEEE
Q 003840 622 IRYWSINN-GSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQ-G---HTKPIDSVCWDPSGELLAS 696 (792)
Q Consensus 622 I~iwdl~~-~~~~~~~~~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~-~---h~~~V~sv~~spdg~~Las 696 (792)
..+|++.. +.....| ....++.|+.....-+.|+......+||+.++.++.++. + ....-+++.|+|+.++|+-
T Consensus 1169 saLW~~~s~~~~~Hsf-~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIln 1247 (1516)
T KOG1832|consen 1169 SALWDASSTGGPRHSF-DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLILN 1247 (1516)
T ss_pred HHHhccccccCccccc-cccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEee
Confidence 78999875 2233333 345567777765556677777889999999987665532 1 2233467889999887764
Q ss_pred EeCCeEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE
Q 003840 697 VSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM 758 (792)
Q Consensus 697 ~s~d~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~ 758 (792)
-+ .+||++.. ..++.+.... ....-.|+|.|.-+++-+ .|||+++.+.+
T Consensus 1248 dG----vLWDvR~~---~aIh~FD~ft-~~~~G~FHP~g~eVIINS-----EIwD~RTF~lL 1296 (1516)
T KOG1832|consen 1248 DG----VLWDVRIP---EAIHRFDQFT-DYGGGGFHPSGNEVIINS-----EIWDMRTFKLL 1296 (1516)
T ss_pred Cc----eeeeeccH---HHHhhhhhhe-ecccccccCCCceEEeec-----hhhhhHHHHHH
Confidence 32 58999876 3444333222 222347999998888754 68999887654
No 305
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.65 E-value=2.7e-05 Score=78.51 Aligned_cols=255 Identities=14% Similarity=0.101 Sum_probs=137.4
Q ss_pred CCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEE
Q 003840 523 DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMS 602 (792)
Q Consensus 523 dg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~s 602 (792)
-|++++.|++.|.+++.++++|+....+.....--......+++..|+.|+.|++.+..|..+ ..++...+...+...+
T Consensus 62 vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~-~~cVykskcgG~~f~s 140 (354)
T KOG4649|consen 62 VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKT-YGCVYKSKCGGGTFVS 140 (354)
T ss_pred ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccc-cceEEecccCCceecc
Confidence 467899999999999999999987776654333222334567888999999999999999998 5556655544443444
Q ss_pred EEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEE--e--eCCeeE--EEEecCCCEEEEEEcCCeEEEEECCCCeEEEEec
Q 003840 603 LDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV--F--KGGTAQ--MRFQPHLGRYLAAAAENVVSILDAETQACRLSLQ 676 (792)
Q Consensus 603 l~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~--~--~~~~~~--v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~ 676 (792)
-++.+....++ .+...|.|.--..+....... + .+++.. ++. +..+..++-||.+.-+| +.++.+..+.
T Consensus 141 P~i~~g~~sly-~a~t~G~vlavt~~~~~~~~~w~~~~~~PiF~splcv---~~sv~i~~VdG~l~~f~-~sG~qvwr~~ 215 (354)
T KOG4649|consen 141 PVIAPGDGSLY-AAITAGAVLAVTKNPYSSTEFWAATRFGPIFASPLCV---GSSVIITTVDGVLTSFD-ESGRQVWRPA 215 (354)
T ss_pred ceecCCCceEE-EEeccceEEEEccCCCCcceehhhhcCCccccCceec---cceEEEEEeccEEEEEc-CCCcEEEeec
Confidence 45555333333 344456665555554422111 1 111111 111 23455666677777777 5555555443
Q ss_pred CCCCCeEE-EEEc-CCCCEEEEEeCC---------eEEEEECCCCCCcceEEEeecCCCceEEEEEeC----CCCEEEEE
Q 003840 677 GHTKPIDS-VCWD-PSGELLASVSED---------SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHP----TYPSLLVI 741 (792)
Q Consensus 677 ~h~~~V~s-v~~s-pdg~~Las~s~d---------~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fsp----dg~~L~sg 741 (792)
..++|.. -+-+ |....|..+.++ .-.+|...++. ..+.+... -..+.++. ..++|..+
T Consensus 216 -t~GpIf~~Pc~s~Ps~q~i~~~~~~Cf~~~~p~~ghL~w~~~~g~---t~~vy~~p---~l~F~~h~~~~S~~~ll~~~ 288 (354)
T KOG4649|consen 216 -TKGPIFMEPCESRPSCQQISLENENCFCAPLPIAGHLLWATQSGT---TLHVYLSP---KLRFDLHSPGISYPKLLRRS 288 (354)
T ss_pred -CCCceecccccCCCcceEEEEecCCeEEEeccccceEEEEecCCc---EEEEEeCc---ccceeccCCCCcchhhhhhh
Confidence 2233321 1111 232334444333 33456655541 11111110 00122221 13457778
Q ss_pred EcCCeEEEEECCCCcEEEEcccCCC---eEEEE-----E-eC---CCCEEEEEeCCCcEEEeC
Q 003840 742 GCYQSLELWNMSENKTMTLTAHEGL---IAALA-----V-ST---ETGYVASASHDKFVKLWK 792 (792)
Q Consensus 742 s~dg~I~IwDl~~~~~~~~~~h~~~---V~sl~-----f-sp---dg~~LaSgs~DG~I~IWd 792 (792)
+.||++.|.-.+.. +.....|.+. +..+. | +| +| +|+.|+.|..|+-||
T Consensus 289 s~dgkv~il~~~~s-l~~~~s~~g~lq~~~~~el~~eIFsSPvii~g-rl~igcRDdYv~cld 349 (354)
T KOG4649|consen 289 SGDGKVMILMTSKS-LAEISSNGGELQNLEAIELSNEIFSSPVIIDG-RLLIGCRDDYVRCLD 349 (354)
T ss_pred cCCCcEEEEEeccc-ccccccCCCccceEEEeecCcccccCCeEEcc-EEEEEEccCeEEEEe
Confidence 88999888844332 2222233332 22222 1 22 44 577788999999986
No 306
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.63 E-value=5.8e-06 Score=98.26 Aligned_cols=240 Identities=13% Similarity=0.161 Sum_probs=149.8
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeE
Q 003840 512 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLR 591 (792)
Q Consensus 512 ~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~ 591 (792)
.+.|.++.|.-+.+-|+.+..+|.|.+-|.++... .....-...|.+++|+||+..++..+.++++.+-+-.- .++.
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~-eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f--~~i~ 144 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLEL-EIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDF--EPIA 144 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccce-eeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccc--cchh
Confidence 35799999999999999999999999998876542 23334567899999999999999999988887754421 1111
Q ss_pred --Eec---ccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeE---EEeeCCeeEEEEecCCCEEEEEEc----C-
Q 003840 592 --TFM---GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT---RVFKGGTAQMRFQPHLGRYLAAAA----E- 658 (792)
Q Consensus 592 --~~~---~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~---~~~~~~~~~v~~sp~~~~lla~s~----d- 658 (792)
.+. ...+..-.+-|-..... | -|+ .|.....+....... .....+...+.|--||.++++... +
T Consensus 145 E~~L~~d~~~~sk~v~VGwGrkeTq-f-rgs-~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~ 221 (1265)
T KOG1920|consen 145 EKPLDADDERKSKFVNVGWGRKETQ-F-RGS-EGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGT 221 (1265)
T ss_pred ccccccccccccccceeccccccee-e-ecc-hhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCc
Confidence 110 01112223333322111 1 111 122222111111110 013345667999999888877432 3
Q ss_pred CeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC----eEEEEECCCCCCcceEEEeecCCCceEEEEEeCC
Q 003840 659 NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPT 734 (792)
Q Consensus 659 g~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d----~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspd 734 (792)
..|+|||.+ +..-..-....+--.+++|-|.|.++++...+ .|.+|.-+..........+......+..++|+.+
T Consensus 222 RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~ 300 (1265)
T KOG1920|consen 222 RKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSN 300 (1265)
T ss_pred eeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCC
Confidence 799999988 43332222233445689999999999986432 6888886543333333334444455899999999
Q ss_pred CCEEEEE---EcCCeEEEEECCCCcEE
Q 003840 735 YPSLLVI---GCYQSLELWNMSENKTM 758 (792)
Q Consensus 735 g~~L~sg---s~dg~I~IwDl~~~~~~ 758 (792)
+..|++. .....|++|-+.+....
T Consensus 301 sdiLAv~~~~~e~~~v~lwt~~NyhWY 327 (1265)
T KOG1920|consen 301 SDILAVVTSNLENSLVQLWTTGNYHWY 327 (1265)
T ss_pred CCceeeeecccccceEEEEEecCeEEE
Confidence 9998884 33446999999886544
No 307
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.63 E-value=1.2e-06 Score=100.87 Aligned_cols=270 Identities=18% Similarity=0.181 Sum_probs=169.8
Q ss_pred eeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCC-CCEEEEEECCCCCeEEEEeCC-------
Q 003840 504 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHS-SLITDVRFSPSMPRLATSSFD------- 575 (792)
Q Consensus 504 ~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~-~~V~~i~fspdg~~Lasgs~D------- 575 (792)
++......-+.|.+++|.....++..|+..|.+.-+-+...+....+..|. ..|..+.....+ +++.+..
T Consensus 46 ~L~~~~~~~G~vS~v~fd~~eel~w~G~~gG~stS~~~s~~~~yssf~v~s~~~v~~~~~~~~~--i~~ls~~alr~~~r 123 (1118)
T KOG1275|consen 46 ELISVGASYGTVSSVHFDLHEELLWRGSSGGHSTSLLLSHRTGYSSFQVHSIDGVRRIEPTESG--IFTLSKTALRATTR 123 (1118)
T ss_pred ceeeeccccccccccccCchHHhheecccCCceeeeecccccceEEEEEeccchhhhhhhhhhh--heeeeHHHhhhhhc
Confidence 444444555678888888887788888877776655554444444444332 112222111111 1111110
Q ss_pred CcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCCe-eEEEEecCCCEEEE
Q 003840 576 KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGT-AQMRFQPHLGRYLA 654 (792)
Q Consensus 576 g~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~-~~v~~sp~~~~lla 654 (792)
+-+-++|..... ...-...+.. +...++.|+.-..+..+|+++.+..+...-.. .+..+..++..+++
T Consensus 124 ~gl~~~~~~~~s--------~~~M~~~~~~---~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~Nnr~lf~ 192 (1118)
T KOG1275|consen 124 QGLPVFDFTCPS--------MTKMASSLHM---GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRYNNRNLFC 192 (1118)
T ss_pred cCceeecccCCC--------HHHHHHHhcc---CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEecCcEEEe
Confidence 112222222100 0000111111 22334477777889999999988887765433 23334455677888
Q ss_pred EEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeC---------C-eEEEEECCCCCCcceEEEeecCCC
Q 003840 655 AAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSE---------D-SVRVWTVGSGSEGECVHELSCNGN 724 (792)
Q Consensus 655 ~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~---------d-~I~IwDl~s~~~~~~i~~~~~~~~ 724 (792)
|...|.|.+-|.++.+.+.++..|.+.|..+. -.|+.|++|+. | .|+|||+++.+...++.. +.+
T Consensus 193 G~t~G~V~LrD~~s~~~iht~~aHs~siSDfD--v~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~---~~~ 267 (1118)
T KOG1275|consen 193 GDTRGTVFLRDPNSFETIHTFDAHSGSISDFD--VQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQF---PYG 267 (1118)
T ss_pred ecccceEEeecCCcCceeeeeeccccceeeee--ccCCeEEEeecccccccccccchhhhhhhhhhhccCCccc---ccC
Confidence 88899999999999999999999999987654 56888998874 3 589999987644333322 222
Q ss_pred ceEEEEEeCCC-CEEEEEEcCCeEEEEE---CCCCcEE--EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003840 725 KFHSCVFHPTY-PSLLVIGCYQSLELWN---MSENKTM--TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 792 (792)
Q Consensus 725 ~i~si~fspdg-~~L~sgs~dg~I~IwD---l~~~~~~--~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd 792 (792)
+ .-+.|+|.. ..+++++..|...+.| +.+...- .+......|.++++++++..||.|..+|.|.+|.
T Consensus 268 P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 268 P-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred c-hhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 2 445778865 4688888899999998 4433222 3334445599999999999999999999999993
No 308
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.62 E-value=7.6e-06 Score=92.26 Aligned_cols=222 Identities=12% Similarity=0.127 Sum_probs=123.7
Q ss_pred cCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCe
Q 003840 552 EHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS 631 (792)
Q Consensus 552 ~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~ 631 (792)
........+.++|+|+++++ +.||...||.... .. -.. .+....++|...+. +|+-.....|.|+.--+.+
T Consensus 30 ~~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~-~r-~k~----~G~g~~~vw~~~n~--yAv~~~~~~I~I~kn~~~~ 100 (443)
T PF04053_consen 30 SCEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALA-WR-NKA----FGSGLSFVWSSRNR--YAVLESSSTIKIYKNFKNE 100 (443)
T ss_dssp E-SS--SEEEE-TTSSEEEE-EETTEEEEEETTT-TE-EEE----EEE-SEEEE-TSSE--EEEE-TTS-EEEEETTEE-
T ss_pred CCCcCCeeEEECCCCCEEEE-EcCCEEEEEEccC-Cc-ccc----cCceeEEEEecCcc--EEEEECCCeEEEEEcCccc
Confidence 34555789999999998888 5677788887432 11 121 13344688888543 5566668889997433333
Q ss_pred eEEEeeCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCC-
Q 003840 632 CTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSG- 710 (792)
Q Consensus 632 ~~~~~~~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d~I~IwDl~s~- 710 (792)
..+.+..+...-.+.. +.++....++.|.+||..+++.+..+... +|..|.|+++|++++..+.+.+.|++....
T Consensus 101 ~~k~i~~~~~~~~If~--G~LL~~~~~~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~~i~il~~~~~~ 176 (443)
T PF04053_consen 101 VVKSIKLPFSVEKIFG--GNLLGVKSSDFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKDSIYILKYNLEA 176 (443)
T ss_dssp TT-----SS-EEEEE---SSSEEEEETTEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S-SEEEEEE-HHH
T ss_pred cceEEcCCcccceEEc--CcEEEEECCCCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCCeEEEEEecchh
Confidence 3334443332222222 55566666669999999999999998743 389999999999999999998777765432
Q ss_pred -----C--CcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEe
Q 003840 711 -----S--EGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASAS 783 (792)
Q Consensus 711 -----~--~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~~~~~h~~~V~sl~fspdg~~LaSgs 783 (792)
+ ....+..+......|.+.+|..+ .|+..+.. .|+. +-.|+...+..-+.++.=+.+.+..+.|+...
T Consensus 177 ~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~~~i~~ld~~~yllgy~~~~~~ly~~D 251 (443)
T PF04053_consen 177 VAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKY--LVNGETGIIAHLDKPLYLLGYLPKENRLYLID 251 (443)
T ss_dssp HHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEE--EETTEEEEEEE-SS--EEEEEETTTTEEEEE-
T ss_pred cccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCcceEEEcCCceEEEEEEccCCEEEEEE
Confidence 0 00133333333567889999877 44444443 6666 55566665555567778888888778888888
Q ss_pred CCCcEEEe
Q 003840 784 HDKFVKLW 791 (792)
Q Consensus 784 ~DG~I~IW 791 (792)
.|+.|..+
T Consensus 252 r~~~v~~~ 259 (443)
T PF04053_consen 252 RDGNVISY 259 (443)
T ss_dssp TT--EEEE
T ss_pred CCCCEEEE
Confidence 89888765
No 309
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.62 E-value=1.6e-05 Score=88.02 Aligned_cols=256 Identities=15% Similarity=0.151 Sum_probs=151.3
Q ss_pred cCCCCEEEEEe---------CCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeE
Q 003840 521 SSDGKLLATGG---------HDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLR 591 (792)
Q Consensus 521 spdg~~Lasgs---------~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~ 591 (792)
|||+++++... ..+.+.|||+++++....... ...+....|+|+|+.|+... ++.|.++++.++ ...+
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~-~~~~ 77 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATG-QETQ 77 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTS-EEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCC-CeEE
Confidence 67888877743 346799999999765544433 67788999999999998886 567999988763 2221
Q ss_pred -Eecc-------c---------CCCeEEEEEcCCCCeEEEEEeCCCcEEE------------------------------
Q 003840 592 -TFMG-------H---------SASVMSLDFHPNKDDLICSCDGDGEIRY------------------------------ 624 (792)
Q Consensus 592 -~~~~-------h---------~~~V~sl~fspd~~~ll~sgs~Dg~I~i------------------------------ 624 (792)
+..+ - -+.-..+.|+||++++++.--++..|+.
T Consensus 78 lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~ 157 (353)
T PF00930_consen 78 LTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPR 157 (353)
T ss_dssp SES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---E
T ss_pred eccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCc
Confidence 2212 0 1223568899999988776555544433
Q ss_pred -----EEcCCCeeEEEe-e-------CCeeEEEEecCCCEEEEEEcC-----CeEEEEECCCCeEEEEecC-CCCCe---
Q 003840 625 -----WSINNGSCTRVF-K-------GGTAQMRFQPHLGRYLAAAAE-----NVVSILDAETQACRLSLQG-HTKPI--- 682 (792)
Q Consensus 625 -----wdl~~~~~~~~~-~-------~~~~~v~~sp~~~~lla~s~d-----g~I~i~D~~t~~~~~~l~~-h~~~V--- 682 (792)
+|+.+++....- . .-+..+.|.+++..+++.-.+ ..+.++|..++++...+.. ...+|
T Consensus 158 v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~ 237 (353)
T PF00930_consen 158 VSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVY 237 (353)
T ss_dssp EEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSS
T ss_pred eEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeee
Confidence 333333321110 0 113446788887755554432 2677788877644332222 23333
Q ss_pred EEEEEc-CCCC-EEEEEeCC---eEEEEECCCCCCcceEEEeecCCCceEE-EEEeCCCCEEEEEEcC-----CeEEEEE
Q 003840 683 DSVCWD-PSGE-LLASVSED---SVRVWTVGSGSEGECVHELSCNGNKFHS-CVFHPTYPSLLVIGCY-----QSLELWN 751 (792)
Q Consensus 683 ~sv~~s-pdg~-~Las~s~d---~I~IwDl~s~~~~~~i~~~~~~~~~i~s-i~fspdg~~L~sgs~d-----g~I~IwD 751 (792)
..+.|. +++. +|.....+ .|++++...+ ....+......|.. +.|+++++.|+..+.. ..|+..+
T Consensus 238 ~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~----~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~ 313 (353)
T PF00930_consen 238 DPPHFLGPDGNEFLWISERDGYRHLYLYDLDGG----KPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVS 313 (353)
T ss_dssp SEEEE-TTTSSEEEEEEETTSSEEEEEEETTSS----EEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEE
T ss_pred cccccccCCCCEEEEEEEcCCCcEEEEEccccc----ceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEE
Confidence 355555 6665 44444444 6888887654 24455555556644 6788988877665553 2677778
Q ss_pred CC-CCcEEEEcccCCCeEEEEEeCCCCEEEEEe
Q 003840 752 MS-ENKTMTLTAHEGLIAALAVSTETGYVASAS 783 (792)
Q Consensus 752 l~-~~~~~~~~~h~~~V~sl~fspdg~~LaSgs 783 (792)
+. .+....+....+....+.|||++++++..+
T Consensus 314 ~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 314 LDSGGEPKCLTCEDGDHYSASFSPDGKYYVDTY 346 (353)
T ss_dssp TTETTEEEESSTTSSTTEEEEE-TTSSEEEEEE
T ss_pred eCCCCCeEeccCCCCCceEEEECCCCCEEEEEE
Confidence 88 666666665555447999999999877544
No 310
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.62 E-value=9.1e-07 Score=93.85 Aligned_cols=157 Identities=13% Similarity=0.136 Sum_probs=106.8
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEECCCCce----eEEeccCCCCEEEEEECCCCCeEEEEeC---CCcEEEEeCCCCC
Q 003840 515 VICCHFSSDGKLLATGGHDKKAVLWHTDTLKS----KTNLEEHSSLITDVRFSPSMPRLATSSF---DKTVRVWDADNPG 587 (792)
Q Consensus 515 V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~----~~~l~~h~~~V~~i~fspdg~~Lasgs~---Dg~V~IWdl~s~~ 587 (792)
+..+.+++++++||++..+....++++..... ..... -...-+++.|..+...+..+.. ...+.+|....
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~-v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~-- 141 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSC-VPKRPTAISFIREDTSVLVADKAGDVYSFDILSADS-- 141 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEee-cccCcceeeeeeccceEEEEeecCCceeeeeecccc--
Confidence 45566788889999998888877777654322 22221 2233445555555555555444 44455555543
Q ss_pred ceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee----CCeeEEEEecCCCEEEEEEcCCeEEE
Q 003840 588 YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK----GGTAQMRFQPHLGRYLAAAAENVVSI 663 (792)
Q Consensus 588 ~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~----~~~~~v~~sp~~~~lla~s~dg~I~i 663 (792)
.....+.+|-..++.|+|+||+. +|++++.|..|++-....-..+..|- .-+..+++.++ ..|++++.|++|++
T Consensus 142 ~~~~~~lGhvSml~dVavS~D~~-~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~ 219 (390)
T KOG3914|consen 142 GRCEPILGHVSMLLDVAVSPDDQ-FIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRL 219 (390)
T ss_pred cCcchhhhhhhhhheeeecCCCC-EEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCcEEE
Confidence 45566678999999999999985 55599999999998776655554442 33455665554 44899999999999
Q ss_pred EECCCCeEEEEec
Q 003840 664 LDAETQACRLSLQ 676 (792)
Q Consensus 664 ~D~~t~~~~~~l~ 676 (792)
||+++++.+.++.
T Consensus 220 Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 220 WDITSGKLLDTCD 232 (390)
T ss_pred EecccCCcccccc
Confidence 9999999886654
No 311
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.60 E-value=5.7e-07 Score=90.21 Aligned_cols=109 Identities=17% Similarity=0.253 Sum_probs=78.3
Q ss_pred CCeEEEEEcCCCC-EEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeC-CCCEEEEEEcCCeEEEEECCCCc
Q 003840 680 KPIDSVCWDPSGE-LLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHP-TYPSLLVIGCYQSLELWNMSENK 756 (792)
Q Consensus 680 ~~V~sv~~spdg~-~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fsp-dg~~L~sgs~dg~I~IwDl~~~~ 756 (792)
..|.++|-+|.-. ++++|++| .+.+||.+.. ..++..+..|+..++.+.|+| ++..|++++.||.+..||..+.-
T Consensus 180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~--~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~~~ 257 (319)
T KOG4714|consen 180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNV--AMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDASTTF 257 (319)
T ss_pred ccchhhhCCcccccEEEEecCCCeEEEEEcccc--cchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCCce
Confidence 3488999999665 45555666 8999999875 355666778999999999999 45789999999999999988521
Q ss_pred EE----------EEc---------------ccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003840 757 TM----------TLT---------------AHEGLIAALAVSTETGYVASASHDKFVKLWK 792 (792)
Q Consensus 757 ~~----------~~~---------------~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd 792 (792)
+- .+. .....|++ |.--|..|++|++-+-|++++
T Consensus 258 l~i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~Sins--fDV~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 258 LSISNQASVISSWLSGDPVKSRIEITSLLPSRSLSINS--FDVLGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred EEecCccccccccccCCcccceEeeeccccccceeeee--eeccCceEEeccccceEEEec
Confidence 11 000 01112232 334577899999989999875
No 312
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.60 E-value=4.6e-05 Score=82.79 Aligned_cols=267 Identities=14% Similarity=0.102 Sum_probs=137.5
Q ss_pred EEEcCCCCEEEEEeC-C--CeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEec
Q 003840 518 CHFSSDGKLLATGGH-D--KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM 594 (792)
Q Consensus 518 lafspdg~~Lasgs~-D--g~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~ 594 (792)
=+|..||+.|+.++. | ..+++.|+++++...--.+.........++++.+.|+....+..|+..|+++ .+....+.
T Consensus 41 ~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T-~e~~~vy~ 119 (386)
T PF14583_consen 41 NCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDT-LEERVVYE 119 (386)
T ss_dssp --B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT---EEEEEE
T ss_pred CCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCc-CcEEEEEE
Confidence 367889976666554 4 4577778888876654443323233566778888877666667889999988 44444555
Q ss_pred ccCCCeEEEEEc--CCCCeEEEEEeC----------------------CCcEEEEEcCCCeeEEEeeCC--eeEEEEecC
Q 003840 595 GHSASVMSLDFH--PNKDDLICSCDG----------------------DGEIRYWSINNGSCTRVFKGG--TAQMRFQPH 648 (792)
Q Consensus 595 ~h~~~V~sl~fs--pd~~~ll~sgs~----------------------Dg~I~iwdl~~~~~~~~~~~~--~~~v~~sp~ 648 (792)
.....+-...|. .++. +++..-. .+.|...|+.+|+....+... ...+.|+|.
T Consensus 120 ~p~~~~g~gt~v~n~d~t-~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~ 198 (386)
T PF14583_consen 120 VPDDWKGYGTWVANSDCT-KLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPT 198 (386)
T ss_dssp --TTEEEEEEEEE-TTSS-EEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEETT
T ss_pred CCcccccccceeeCCCcc-EEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCCC
Confidence 555555445553 3333 3322110 235677788888877766644 467899999
Q ss_pred CCEEEEEEcCC-----eEEEEECCC-CeEEEEecCCC--CCeEEEEEcCCCCEEEEEeC-----C-eEEEEECCCCCCcc
Q 003840 649 LGRYLAAAAEN-----VVSILDAET-QACRLSLQGHT--KPIDSVCWDPSGELLASVSE-----D-SVRVWTVGSGSEGE 714 (792)
Q Consensus 649 ~~~lla~s~dg-----~I~i~D~~t-~~~~~~l~~h~--~~V~sv~~spdg~~Las~s~-----d-~I~IwDl~s~~~~~ 714 (792)
...+++-|-+| .-+||-+++ +.....+..+. ..+..=-|.+||..|...+. + .|.-+|+.+++. .
T Consensus 199 dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~-~ 277 (386)
T PF14583_consen 199 DPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGER-R 277 (386)
T ss_dssp EEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--E-E
T ss_pred CCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCc-e
Confidence 98888877654 124554433 23333333332 23445569999997665332 3 677788877643 2
Q ss_pred eEEEeecCCCceEEEEEeCCCCEEEEEEcCC----------------eEEEEECCCCcEEEEcccCC-----------Ce
Q 003840 715 CVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ----------------SLELWNMSENKTMTLTAHEG-----------LI 767 (792)
Q Consensus 715 ~i~~~~~~~~~i~si~fspdg~~L~sgs~dg----------------~I~IwDl~~~~~~~~~~h~~-----------~V 767 (792)
.+... .....+..++|+++++-=+.|. -|+++++..+....+..|.. .=
T Consensus 278 ~~~~~----p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~h 353 (386)
T PF14583_consen 278 RLMEM----PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTH 353 (386)
T ss_dssp EEEEE-----SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------BTTBSSTT-
T ss_pred EEEeC----CceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCccCC
Confidence 22222 2355666778888655434431 56778888877654444421 12
Q ss_pred EEEEEeCCCCEEEEEe-CCCcEEEe
Q 003840 768 AALAVSTETGYVASAS-HDKFVKLW 791 (792)
Q Consensus 768 ~sl~fspdg~~LaSgs-~DG~I~IW 791 (792)
....|+||+++|+..| ..|...||
T Consensus 354 Php~FSPDgk~VlF~Sd~~G~~~vY 378 (386)
T PF14583_consen 354 PHPSFSPDGKWVLFRSDMEGPPAVY 378 (386)
T ss_dssp ---EE-TTSSEEEEEE-TTSS-EEE
T ss_pred CCCccCCCCCEEEEECCCCCCccEE
Confidence 4578999999876554 47777665
No 313
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.59 E-value=7.6e-07 Score=89.34 Aligned_cols=164 Identities=13% Similarity=0.149 Sum_probs=108.4
Q ss_pred eeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-eeEEeccCCCCEEEEEECCCCCeEEEEeC-----CCc
Q 003840 504 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK-SKTNLEEHSSLITDVRFSPSMPRLATSSF-----DKT 577 (792)
Q Consensus 504 ~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~-~~~~l~~h~~~V~~i~fspdg~~Lasgs~-----Dg~ 577 (792)
..+++..|.++-.+-+.+--++.++++..||.+.+++.+... ....+..-...-.+.++...++.|.++.. -+.
T Consensus 81 ~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~ 160 (319)
T KOG4714|consen 81 PFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDN 160 (319)
T ss_pred ceeeeeccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccc
Confidence 444555666666666667777889999999999999987521 11222211111222233334444444321 234
Q ss_pred EEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeE----EEeeCCeeEEEEecCC-CEE
Q 003840 578 VRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT----RVFKGGTAQMRFQPHL-GRY 652 (792)
Q Consensus 578 V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~----~~~~~~~~~v~~sp~~-~~l 652 (792)
.++|+++-.+..+..... ...|.+++-+|.-.+++++|+.||.|.+||.+..... +..+..+..+-|+|.. ..|
T Consensus 161 ~~a~~~~p~~t~~~~~~~-~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~L 239 (319)
T KOG4714|consen 161 FYANTLDPIKTLIPSKKA-LDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHL 239 (319)
T ss_pred eeeecccccccccccccc-cccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchhe
Confidence 677777653322222222 2349999999999999999999999999999987433 2345677889999865 578
Q ss_pred EEEEcCCeEEEEECCC
Q 003840 653 LAAAAENVVSILDAET 668 (792)
Q Consensus 653 la~s~dg~I~i~D~~t 668 (792)
+++++||.+.-||..+
T Consensus 240 ft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 240 FTCSEDGSLWHWDAST 255 (319)
T ss_pred eEecCCCcEEEEcCCC
Confidence 9999999999999765
No 314
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.58 E-value=9.5e-06 Score=92.74 Aligned_cols=255 Identities=14% Similarity=0.092 Sum_probs=149.9
Q ss_pred CCCCEEEEEeC-CCeEEEEECCCCceeEEecc-CCCCEEEEEEC--CCCCeEEEEe------------------CCCcEE
Q 003840 522 SDGKLLATGGH-DKKAVLWHTDTLKSKTNLEE-HSSLITDVRFS--PSMPRLATSS------------------FDKTVR 579 (792)
Q Consensus 522 pdg~~Lasgs~-Dg~I~vWdl~t~~~~~~l~~-h~~~V~~i~fs--pdg~~Lasgs------------------~Dg~V~ 579 (792)
.||+||+.-.. +..|...+++..++.+.++- ....+..++|- |+..|+++++ +.+.+.
T Consensus 139 ydGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vS 218 (635)
T PRK02888 139 YDGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFT 218 (635)
T ss_pred cceeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEE
Confidence 48889988764 56677778887776655542 22233333332 3333444332 334556
Q ss_pred EEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEe---CCCcEEEEEcCCCeeEEEeeCCeeEEEEecCCCEEEEEE
Q 003840 580 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCD---GDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAA 656 (792)
Q Consensus 580 IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs---~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~lla~s 656 (792)
+.|.++ .+....+.- .+....+.++++++.+++++. ...++...+..+...+..|.-.. ...+.+++++.++
T Consensus 219 vID~et-meV~~qV~V-dgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~-iea~vkdGK~~~V-- 293 (635)
T PRK02888 219 AVDAET-MEVAWQVMV-DGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIAR-IEEAVKAGKFKTI-- 293 (635)
T ss_pred EEECcc-ceEEEEEEe-CCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHH-HHHhhhCCCEEEE--
Confidence 666665 233333221 224456788888887776652 22344444443333222222110 1134456666555
Q ss_pred cCCeEEEEECCC-----CeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC--eEEEEECCCCCC---------cceEEEee
Q 003840 657 AENVVSILDAET-----QACRLSLQGHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSE---------GECVHELS 720 (792)
Q Consensus 657 ~dg~I~i~D~~t-----~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d--~I~IwDl~s~~~---------~~~i~~~~ 720 (792)
.++.|.++|.++ .+.+..+. -......|.++|||+++++++.- +|.|+|+.+... ...+.+..
T Consensus 294 ~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaeve 372 (635)
T PRK02888 294 GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPE 372 (635)
T ss_pred CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeec
Confidence 467899999998 35555554 34556889999999999888764 999999987532 11223333
Q ss_pred cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC----------CcEE-EEcccCCCe-----EEEEEeCCCCEEEEEe
Q 003840 721 CNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSE----------NKTM-TLTAHEGLI-----AALAVSTETGYVASAS 783 (792)
Q Consensus 721 ~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~----------~~~~-~~~~h~~~V-----~sl~fspdg~~LaSgs 783 (792)
. +......+|.++|....+..-|..|..||+.+ ..++ .+..|-.+. .+=.-.+||+||++.+
T Consensus 373 v-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~n 450 (635)
T PRK02888 373 L-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLN 450 (635)
T ss_pred c-CCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEcc
Confidence 2 33455678999998888888899999999876 2233 233332221 1122367888888764
No 315
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.58 E-value=1.5e-07 Score=97.67 Aligned_cols=157 Identities=15% Similarity=0.239 Sum_probs=120.9
Q ss_pred EEEEcCC--CCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCC----Ccee
Q 003840 517 CCHFSSD--GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP----GYSL 590 (792)
Q Consensus 517 ~lafspd--g~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~----~~~i 590 (792)
.|+|+-+ |-. ++.+.+-.|-+-|++++-.-. |. ..+.|.++.|.-.+++++.|+.+|.|.++|++.. +.+.
T Consensus 216 ~CawSlni~gyh-fs~G~sqqv~L~nvetg~~qs-f~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a 292 (425)
T KOG2695|consen 216 SCAWSLNIMGYH-FSVGLSQQVLLTNVETGHQQS-FQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCA 292 (425)
T ss_pred hhhhhhccceee-ecccccceeEEEEeecccccc-cc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcce
Confidence 3466643 323 445567778888998875332 32 5677999999998999999999999999999874 4444
Q ss_pred EEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCee---EEEeeCCeeEEE-----EecCCCEEEEEEcCCeEE
Q 003840 591 RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC---TRVFKGGTAQMR-----FQPHLGRYLAAAAENVVS 662 (792)
Q Consensus 591 ~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~---~~~~~~~~~~v~-----~sp~~~~lla~s~dg~I~ 662 (792)
..+ -|...|+++.........+.+.+.+|+|++||++.-++ +..++++++..+ +.+..+.+++++.|-..+
T Consensus 293 ~rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytR 371 (425)
T KOG2695|consen 293 QRL-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTR 371 (425)
T ss_pred EEE-EcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEE
Confidence 444 48899999988763344566888899999999998777 888888876643 556778899999999999
Q ss_pred EEECCCCeEEEEecC
Q 003840 663 ILDAETQACRLSLQG 677 (792)
Q Consensus 663 i~D~~t~~~~~~l~~ 677 (792)
||.++.+..+.++..
T Consensus 372 iWsl~~ghLl~tipf 386 (425)
T KOG2695|consen 372 IWSLDSGHLLCTIPF 386 (425)
T ss_pred EEecccCceeeccCC
Confidence 999999988887754
No 316
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=5.7e-07 Score=96.23 Aligned_cols=205 Identities=14% Similarity=0.182 Sum_probs=146.4
Q ss_pred cCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCC--CCceeEEecccCCCeEEEEEcCCCCeEEEEEeC-CCcEEEEEcC
Q 003840 552 EHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN--PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDG-DGEIRYWSIN 628 (792)
Q Consensus 552 ~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s--~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~-Dg~I~iwdl~ 628 (792)
-|.+.|+.+... ..+++++++.||.++.|.-.. +-+.+..+..|...|.+++.+-++ .++++.+. |..++++|++
T Consensus 7 mhrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg-~L~~Sv~d~Dhs~KvfDvE 84 (558)
T KOG0882|consen 7 MHRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDG-WLFRSVEDPDHSVKVFDVE 84 (558)
T ss_pred cccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccc-eeEeeccCcccceeEEEee
Confidence 377777776655 456999999999999997653 224556677888999999998885 57778676 9999999998
Q ss_pred CCeeEEEeeC--CeeEEEEecCCC---EEEEEE--cCCeEEEEECCCCe--EEEEecCCCCCeEEEEEcCCCCEEEEEeC
Q 003840 629 NGSCTRVFKG--GTAQMRFQPHLG---RYLAAA--AENVVSILDAETQA--CRLSLQGHTKPIDSVCWDPSGELLASVSE 699 (792)
Q Consensus 629 ~~~~~~~~~~--~~~~v~~sp~~~---~lla~s--~dg~I~i~D~~t~~--~~~~l~~h~~~V~sv~~spdg~~Las~s~ 699 (792)
+-..+..++. -...++|....+ .+++.+ .++.|.|+|-.... ....-.-|..+|.++.+.+.+..+++...
T Consensus 85 n~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~ 164 (558)
T KOG0882|consen 85 NFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDI 164 (558)
T ss_pred ccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccc
Confidence 8766543331 112222322222 223332 37899999987653 33344459999999999999999988887
Q ss_pred C-eEEEEECCC-CC--C---------cceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE
Q 003840 700 D-SVRVWTVGS-GS--E---------GECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM 758 (792)
Q Consensus 700 d-~I~IwDl~s-~~--~---------~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~ 758 (792)
. .|..|.... .. . ...+..+........++.|+|++..|.+.+.|..|+++++++++.+
T Consensus 165 ~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklv 236 (558)
T KOG0882|consen 165 SGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLV 236 (558)
T ss_pred cceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhh
Confidence 6 899998863 10 0 0112233334566789999999999999999999999999998754
No 317
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.57 E-value=2.6e-05 Score=90.07 Aligned_cols=256 Identities=12% Similarity=0.104 Sum_probs=149.0
Q ss_pred CCEEEEEeCCCeEEEEECCCCceeEEeccCCCC------EE--EEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEecc
Q 003840 524 GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSL------IT--DVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMG 595 (792)
Q Consensus 524 g~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~------V~--~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~ 595 (792)
+..+++++.++.|+.+|..+++.+-.+...... +. .+.+. ++..++.++.++.|+-+|.++ ++.+-.+..
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~T-G~~~W~~~~ 138 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAET-GKQVWKFGN 138 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCC-CCEeeeecC
Confidence 346777778899999999999888776543220 00 11111 226888888999999999998 555544432
Q ss_pred cCCC-----e-EEEEEcCCCCeEEEEEe---------CCCcEEEEEcCCCeeEEEeeCCe--------------------
Q 003840 596 HSAS-----V-MSLDFHPNKDDLICSCD---------GDGEIRYWSINNGSCTRVFKGGT-------------------- 640 (792)
Q Consensus 596 h~~~-----V-~sl~fspd~~~ll~sgs---------~Dg~I~iwdl~~~~~~~~~~~~~-------------------- 640 (792)
.... | .+..+.. . +++.++ .+|.|..+|..+++.+..++...
T Consensus 139 ~~~~~~~~~i~ssP~v~~--~-~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g 215 (488)
T cd00216 139 NDQVPPGYTMTGAPTIVK--K-LVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGG 215 (488)
T ss_pred CCCcCcceEecCCCEEEC--C-EEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCC
Confidence 2210 1 1122221 2 233443 46889999999999887764321
Q ss_pred ----eEEEEecCCCEEEEEEcCC------------------eEEEEECCCCeEEEEecCCCCCeE------EEEEc----
Q 003840 641 ----AQMRFQPHLGRYLAAAAEN------------------VVSILDAETQACRLSLQGHTKPID------SVCWD---- 688 (792)
Q Consensus 641 ----~~v~~sp~~~~lla~s~dg------------------~I~i~D~~t~~~~~~l~~h~~~V~------sv~~s---- 688 (792)
....+.+.++.+++++.++ .|.-+|.++++.+..+..-...+. ...+.
T Consensus 216 ~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~ 295 (488)
T cd00216 216 GTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKP 295 (488)
T ss_pred CCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccc
Confidence 0133445567888887665 799999999999887653111110 00111
Q ss_pred CCCC---EEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEE------------------EcCCe
Q 003840 689 PSGE---LLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVI------------------GCYQS 746 (792)
Q Consensus 689 pdg~---~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sg------------------s~dg~ 746 (792)
-++. +++.++.+ .+..+|.++++ .+...... ...++.+| ..++++ ..+|.
T Consensus 296 ~~g~~~~~V~~g~~~G~l~ald~~tG~---~~W~~~~~---~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~ 367 (488)
T cd00216 296 KDGKPVPAIVHAPKNGFFYVLDRTTGK---LISARPEV---EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGG 367 (488)
T ss_pred cCCCeeEEEEEECCCceEEEEECCCCc---EeeEeEee---ccccccCC--ceEEEccccccccCcccccCCCCCCCceE
Confidence 2343 56666666 89999999884 33332211 11122333 233332 23578
Q ss_pred EEEEECCCCcEEEEcccC---------CCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003840 747 LELWNMSENKTMTLTAHE---------GLIAALAVSTETGYVASASHDKFVKLWK 792 (792)
Q Consensus 747 I~IwDl~~~~~~~~~~h~---------~~V~sl~fspdg~~LaSgs~DG~I~IWd 792 (792)
|.-+|+.+++.+-..... .....-.....+.+|+.++.||.|+.+|
T Consensus 368 l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald 422 (488)
T cd00216 368 LAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFD 422 (488)
T ss_pred EEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEE
Confidence 899999999877322211 1111111112456788888899888764
No 318
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.56 E-value=9.6e-06 Score=91.71 Aligned_cols=273 Identities=11% Similarity=0.114 Sum_probs=153.9
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEe-ccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcee
Q 003840 512 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNL-EEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSL 590 (792)
Q Consensus 512 ~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l-~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i 590 (792)
...|.--+++..+++|+.|+.-|.|++|+-..+.....- .+..+.+..+..+++..++|.|+..|.|.|+-+......-
T Consensus 33 ~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~ 112 (726)
T KOG3621|consen 33 PARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRD 112 (726)
T ss_pred cceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCc
Confidence 444666677788889999999999999998776544332 2345556677788888889999999999999887633221
Q ss_pred EE----e-cccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCC-----eeEEEeeCCeeEEEEecCCCEEEEEEcCCe
Q 003840 591 RT----F-MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG-----SCTRVFKGGTAQMRFQPHLGRYLAAAAENV 660 (792)
Q Consensus 591 ~~----~-~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~-----~~~~~~~~~~~~v~~sp~~~~lla~s~dg~ 660 (792)
.. + ..|...|++++|++++..++ +|+..|.|.+-.+... .....++.....+.++.-..++++++.-..
T Consensus 113 ~~~~t~~d~~~~~rVTal~Ws~~~~k~y-sGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q~~LLVStl~r~ 191 (726)
T KOG3621|consen 113 LDYVTPCDKSHKCRVTALEWSKNGMKLY-SGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQSYLLVSTLTRC 191 (726)
T ss_pred ceeeccccccCCceEEEEEecccccEEe-ecCCCceEEEEEechhhhhccccceeeccCcceEEeecccceehHhhhhhh
Confidence 11 1 23778999999999987655 9999999999888772 111222223333444444455555444333
Q ss_pred EEEEECCCCeEEEEec-CCCC-CeEEEEEcCC----CCEEEEEeCCeEEEEECCCCCCcceEEEee--------------
Q 003840 661 VSILDAETQACRLSLQ-GHTK-PIDSVCWDPS----GELLASVSEDSVRVWTVGSGSEGECVHELS-------------- 720 (792)
Q Consensus 661 I~i~D~~t~~~~~~l~-~h~~-~V~sv~~spd----g~~Las~s~d~I~IwDl~s~~~~~~i~~~~-------------- 720 (792)
+ +++++..+....-+ ..++ .-...||-|. ..-++.|+.-..|+|.++-..+....+.++
T Consensus 192 ~-Lc~tE~eti~QIG~k~R~~~~~~GACF~~g~~~~q~~~IycaRPG~RlWead~~G~V~~Thqfk~ala~~p~p~i~~~ 270 (726)
T KOG3621|consen 192 I-LCQTEAETITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCARPGLRLWEADFAGEVIKTHQFKDALARPPAPEIPIR 270 (726)
T ss_pred h-eeecchhHHHHhcCCCcCCccccceEEeeccccCCCceEEEecCCCceEEeecceeEEEeeehhhhhccCCCCcccCC
Confidence 3 33443322110000 0111 1234455553 334444554467788764321111111110
Q ss_pred c-------------CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEeCCCc
Q 003840 721 C-------------NGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKF 787 (792)
Q Consensus 721 ~-------------~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~~~~~h~~~V~sl~fspdg~~LaSgs~DG~ 787 (792)
. +.-....+.+- .+..+++-+.-| |+|+|..+...+........|..++.+ ++-|++-..||.
T Consensus 271 s~esp~~~~~~~~~q~ls~~k~~~l-~~~~vLa~te~G-iyv~d~~~~~v~l~se~~~DI~dVs~~--~neiFvL~~d~~ 346 (726)
T KOG3621|consen 271 SLESPNQRSLPSGTQHLSLSKSSTL-HSDRVLAWTEVG-IYVFDSNNSQVYLWSEGGHDILDVSHC--GNEIFVLNLDRG 346 (726)
T ss_pred CcCCccccCCCCCccccccceeEEe-ecceEEEeecce-EEEEEeccceEEEeecCCCceeEEeec--CceEEEEecCCc
Confidence 0 00001111121 222344444444 999999888877666555667666654 333444455665
Q ss_pred EEE
Q 003840 788 VKL 790 (792)
Q Consensus 788 I~I 790 (792)
+++
T Consensus 347 l~~ 349 (726)
T KOG3621|consen 347 LKV 349 (726)
T ss_pred eeE
Confidence 544
No 319
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.53 E-value=2e-05 Score=80.85 Aligned_cols=187 Identities=15% Similarity=0.120 Sum_probs=110.1
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEecc-------CCCCEEEEEECCCC------CeEEEEeCCCcEEEE
Q 003840 515 VICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE-------HSSLITDVRFSPSM------PRLATSSFDKTVRVW 581 (792)
Q Consensus 515 V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~-------h~~~V~~i~fspdg------~~Lasgs~Dg~V~IW 581 (792)
=.-++||||+.+||.+...|+|+|||+... .+..+.. -...|..+.|.+.. ..|++-.++|.++-|
T Consensus 46 WRkl~WSpD~tlLa~a~S~G~i~vfdl~g~-~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy 124 (282)
T PF15492_consen 46 WRKLAWSPDCTLLAYAESTGTIRVFDLMGS-ELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSY 124 (282)
T ss_pred heEEEECCCCcEEEEEcCCCeEEEEecccc-eeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeE
Confidence 467899999999999999999999998753 3333332 23567777776532 257777888888877
Q ss_pred eCCC----CCceeEEec---ccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCCeeEEEEecCCCEEE-
Q 003840 582 DADN----PGYSLRTFM---GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYL- 653 (792)
Q Consensus 582 dl~s----~~~~i~~~~---~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~ll- 653 (792)
-+.. +......+. .+...|.++.|+|...-|++.|.....-..+. ....+..+-++..+..++.
T Consensus 125 ~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~--------a~~~GLtaWRiL~~~Pyyk~ 196 (282)
T PF15492_consen 125 LVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSK--------ASSCGLTAWRILSDSPYYKQ 196 (282)
T ss_pred EEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCcccc--------ccccCceEEEEcCCCCcEEE
Confidence 7632 112222222 34678999999998765555554433211110 0111122222211111111
Q ss_pred -EEEcCCe------EEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCC
Q 003840 654 -AAAAENV------VSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSG 710 (792)
Q Consensus 654 -a~s~dg~------I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~ 710 (792)
....|+. ..+|.+-+.+...........|..|..+|||.+||+...+ .|.+|++.+-
T Consensus 197 v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL 261 (282)
T PF15492_consen 197 VTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSL 261 (282)
T ss_pred ccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcc
Confidence 1111111 1223322222222222346779999999999999999988 9999999754
No 320
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=98.48 E-value=0.00022 Score=80.69 Aligned_cols=241 Identities=14% Similarity=0.096 Sum_probs=136.8
Q ss_pred eEEEEEcCCCCEEEEE-eCC----CeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCC-----------cE
Q 003840 515 VICCHFSSDGKLLATG-GHD----KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK-----------TV 578 (792)
Q Consensus 515 V~~lafspdg~~Lasg-s~D----g~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg-----------~V 578 (792)
+..+++||||++||.+ +.. ..|+|+|+++++.+...-... ....+.|.++++.|+....+. .|
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~-~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v 204 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP-KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV 204 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE-ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc-ccceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence 4467899999999876 333 359999999997765332111 122399999988776665433 38
Q ss_pred EEEeCCCCCce-eEEecccCCC--eEEEEEcCCCCeEEEEEeCCC---cEEEEEcCCC-----eeEEEeeC--CeeEEEE
Q 003840 579 RVWDADNPGYS-LRTFMGHSAS--VMSLDFHPNKDDLICSCDGDG---EIRYWSINNG-----SCTRVFKG--GTAQMRF 645 (792)
Q Consensus 579 ~IWdl~s~~~~-i~~~~~h~~~--V~sl~fspd~~~ll~sgs~Dg---~I~iwdl~~~-----~~~~~~~~--~~~~v~~ 645 (792)
++|++.+.... ...+...... ...+.++++++.+++...... .|++.|+..+ ........ .......
T Consensus 205 ~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~ 284 (414)
T PF02897_consen 205 YRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVD 284 (414)
T ss_dssp EEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEE
T ss_pred EEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEE
Confidence 88898874433 3344333322 678889999998887665544 4888888875 22333322 2222222
Q ss_pred ecCCCEEEEEEc----CCeEEEEECCCCe---EEEEecCCCCCeEEEEEcCCCCEEEE-EeCC---eEEEEECCCCCCcc
Q 003840 646 QPHLGRYLAAAA----ENVVSILDAETQA---CRLSLQGHTKPIDSVCWDPSGELLAS-VSED---SVRVWTVGSGSEGE 714 (792)
Q Consensus 646 sp~~~~lla~s~----dg~I~i~D~~t~~---~~~~l~~h~~~V~sv~~spdg~~Las-~s~d---~I~IwDl~s~~~~~ 714 (792)
.. ++.+++.+. .+.|...++.... ....+..+...+.-..+...+++|+. ...+ .|++|++..+ .
T Consensus 285 ~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~---~ 360 (414)
T PF02897_consen 285 HH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDG---K 360 (414)
T ss_dssp EE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-T---E
T ss_pred cc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCC---c
Confidence 22 555554443 4578888888764 23344455554333333344444444 3344 7999999722 2
Q ss_pred eEEEeec-CCCceEEEEEeCCCCEEEEEEcC----CeEEEEECCCCcEEEE
Q 003840 715 CVHELSC-NGNKFHSCVFHPTYPSLLVIGCY----QSLELWNMSENKTMTL 760 (792)
Q Consensus 715 ~i~~~~~-~~~~i~si~fspdg~~L~sgs~d----g~I~IwDl~~~~~~~~ 760 (792)
....+.. ..+.+..+...++++.+...-.. .+|+.||+.+++...+
T Consensus 361 ~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~~ 411 (414)
T PF02897_consen 361 ESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTLL 411 (414)
T ss_dssp EEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEEE
T ss_pred EEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEEE
Confidence 3333332 33345666555666654443332 4899999999886643
No 321
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.46 E-value=5.1e-06 Score=94.96 Aligned_cols=181 Identities=18% Similarity=0.234 Sum_probs=127.4
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeE
Q 003840 512 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLR 591 (792)
Q Consensus 512 ~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~ 591 (792)
.+.++|++++ +++|+.|+.+|.|++++....- .+...|... ..+|.++++|+.||+|.|..+.++.. ..
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~--~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~-~~ 107 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGNP--KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDE-IT 107 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCCcc--ccccccccc------ccCCceEEEecCCCcEEEeeccCCcc-ce
Confidence 4567888887 4599999999999999876432 333344443 56899999999999999999987443 33
Q ss_pred EecccCCCeEEEEEcCC----CCeEEEEEeCCCcEEEEEcCC---C--eeEEEeeCCeeEEEEecCCCEEEEEEcCCeEE
Q 003840 592 TFMGHSASVMSLDFHPN----KDDLICSCDGDGEIRYWSINN---G--SCTRVFKGGTAQMRFQPHLGRYLAAAAENVVS 662 (792)
Q Consensus 592 ~~~~h~~~V~sl~fspd----~~~ll~sgs~Dg~I~iwdl~~---~--~~~~~~~~~~~~v~~sp~~~~lla~s~dg~I~ 662 (792)
.+ ....++.+|+++|+ ....+++|+..| +.++.-+- . ......++.+.++.|. +.+++-..|-.|+
T Consensus 108 ~~-df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~---g~lIAWand~Gv~ 182 (846)
T KOG2066|consen 108 QY-DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR---GNLIAWANDDGVK 182 (846)
T ss_pred eE-ecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec---CcEEEEecCCCcE
Confidence 33 34578999999998 223466888888 77665321 1 1233445777888886 4578888888899
Q ss_pred EEECCCCeEEEEecCCCCCe------EEEEEcCCCCEEEEEeCCeEEEEECCC
Q 003840 663 ILDAETQACRLSLQGHTKPI------DSVCWDPSGELLASVSEDSVRVWTVGS 709 (792)
Q Consensus 663 i~D~~t~~~~~~l~~h~~~V------~sv~~spdg~~Las~s~d~I~IwDl~s 709 (792)
|||+.++..+..+......+ ..+.|.++ ..|+.|-.|+|+|..++.
T Consensus 183 vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~-~~LVIGW~d~v~i~~I~~ 234 (846)
T KOG2066|consen 183 VYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDE-DRLVIGWGDSVKICSIKK 234 (846)
T ss_pred EEeccccceeeccCCCCCCCCcccCCCceEecCC-CeEEEecCCeEEEEEEec
Confidence 99999988877665433322 34677655 456667777888888873
No 322
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.45 E-value=0.00028 Score=75.41 Aligned_cols=255 Identities=11% Similarity=0.122 Sum_probs=157.0
Q ss_pred CeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeC----------CCcEEEEeCCCCCceeEEeccc---C---
Q 003840 534 KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF----------DKTVRVWDADNPGYSLRTFMGH---S--- 597 (792)
Q Consensus 534 g~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~----------Dg~V~IWdl~s~~~~i~~~~~h---~--- 597 (792)
+.|+|+|.++++.+-.+..- ..-.+..+|+++.+++++. .-.|.+||..+ -.....+.-. .
T Consensus 17 ~rv~viD~d~~k~lGmi~~g--~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~T-L~~~~EI~iP~k~R~~~ 93 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTG--FLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQT-LSPTGEIEIPPKPRAQV 93 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEE--SSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTT-TEEEEEEEETTS-B--B
T ss_pred ceEEEEECCCCcEEEEeecc--cCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCc-CcccceEecCCcchhee
Confidence 47999999999988777642 2334678999998887642 34589999987 3333322211 1
Q ss_pred -CCeEEEEEcCCCCeEEEE-EeCCCcEEEEEcCCCeeEEEeeCCeeEEEEecCCCEEEEEEcCCeEEEEECC-CCeEEEE
Q 003840 598 -ASVMSLDFHPNKDDLICS-CDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAE-TQACRLS 674 (792)
Q Consensus 598 -~~V~sl~fspd~~~ll~s-gs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~lla~s~dg~I~i~D~~-t~~~~~~ 674 (792)
.....+.++.+++++++. .+-.-.|.|.|+..++.+..+..+.....+-.....+.+.|.||.+..+.+. .++...+
T Consensus 94 ~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~ 173 (342)
T PF06433_consen 94 VPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQK 173 (342)
T ss_dssp S--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEE
T ss_pred cccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEEEecCCCceEEEecCCceEEEEECCCCCEeEe
Confidence 122345677777766543 2234568889999999988887666555554444678899999999888887 4444322
Q ss_pred ----ecCCCCCe-EEEEEcCCCC-EEEEEeCCeEEEEECCCCCCcceEEEeecC----------CCceEEEEEeCCCCEE
Q 003840 675 ----LQGHTKPI-DSVCWDPSGE-LLASVSEDSVRVWTVGSGSEGECVHELSCN----------GNKFHSCVFHPTYPSL 738 (792)
Q Consensus 675 ----l~~h~~~V-~sv~~spdg~-~Las~s~d~I~IwDl~s~~~~~~i~~~~~~----------~~~i~si~fspdg~~L 738 (792)
|.....++ ..-++...+. +++....+.|+-.|+.... .+....+... .+...-+++++..+.|
T Consensus 174 ~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~-~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rl 252 (342)
T PF06433_consen 174 STKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDS-AKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRL 252 (342)
T ss_dssp EEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSS-EEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEE
T ss_pred eccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCc-ccccCcccccCccccccCcCCcceeeeeeccccCeE
Confidence 22222222 2334444444 4444444488888876542 2233322211 1223457888877766
Q ss_pred EEEEcCC----------eEEEEECCCCcEEEEcccCCCeEEEEEeCCCC-EEEEEe-CCCcEEEeC
Q 003840 739 LVIGCYQ----------SLELWNMSENKTMTLTAHEGLIAALAVSTETG-YVASAS-HDKFVKLWK 792 (792)
Q Consensus 739 ~sgs~dg----------~I~IwDl~~~~~~~~~~h~~~V~sl~fspdg~-~LaSgs-~DG~I~IWd 792 (792)
++.-..| .|.+||+.+++.+....-...+.+|.++.|.+ +|++.+ .++.|.|||
T Consensus 253 yvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D 318 (342)
T PF06433_consen 253 YVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYD 318 (342)
T ss_dssp EEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEE
T ss_pred EEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEe
Confidence 6653221 68999999999885555455688999998776 665544 578999986
No 323
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.45 E-value=7e-06 Score=94.72 Aligned_cols=182 Identities=14% Similarity=0.130 Sum_probs=134.0
Q ss_pred CCCeEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCCeeE-E
Q 003840 565 SMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQ-M 643 (792)
Q Consensus 565 dg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~-v 643 (792)
++..++.|+.-..+..+|+++ .+..+...-....|+-++.+ ++++++|...|+|.+-|.++.+.++.+..+... .
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~-~~e~r~~~v~a~~v~imR~N---nr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siS 221 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNT-EKETRTTNVSASGVTIMRYN---NRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSIS 221 (1118)
T ss_pred CCcceeecchhhheeeeeccc-ceeeeeeeccCCceEEEEec---CcEEEeecccceEEeecCCcCceeeeeecccccee
Confidence 455788888888899999987 44555544444456666654 456779999999999999999999999987666 4
Q ss_pred EEecCCCEEEEEEc---------CCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCC-CEEEEE-eCCeEEEEECCCCCC
Q 003840 644 RFQPHLGRYLAAAA---------ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSG-ELLASV-SEDSVRVWTVGSGSE 712 (792)
Q Consensus 644 ~~sp~~~~lla~s~---------dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg-~~Las~-s~d~I~IwDl~s~~~ 712 (792)
.|...|+.+++++. |..|.|||+++.+.+.-+.-+.++ .-+.|.|.- ..++++ +.+...+.|..+...
T Consensus 222 DfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsN 300 (1118)
T KOG1275|consen 222 DFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSN 300 (1118)
T ss_pred eeeccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCC
Confidence 58888999998875 567999999998777665555444 345677742 234444 444777777433222
Q ss_pred -cceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEE
Q 003840 713 -GECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWN 751 (792)
Q Consensus 713 -~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwD 751 (792)
...+.-+......+..+.+++++..++.|..+|.|.+|.
T Consensus 301 P~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 301 PPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred CccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 234455555666799999999999999999999999997
No 324
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.44 E-value=2.2e-05 Score=88.26 Aligned_cols=190 Identities=13% Similarity=0.242 Sum_probs=127.0
Q ss_pred CceeEEecccCCCeEEEEEcCCCCeEEEEEeCC---CcEEEEEcCCCeeEEE--eeCCeeEEEEecCCCEEEEEEc-CC-
Q 003840 587 GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD---GEIRYWSINNGSCTRV--FKGGTAQMRFQPHLGRYLAAAA-EN- 659 (792)
Q Consensus 587 ~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~D---g~I~iwdl~~~~~~~~--~~~~~~~v~~sp~~~~lla~s~-dg- 659 (792)
+.....+......+..-+|+|++..+++..-.. ..++++|+++++.... +.+......|+|++.+++.+.. ||
T Consensus 182 g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~ 261 (425)
T COG0823 182 GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGS 261 (425)
T ss_pred CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCC
Confidence 444555555666778889999998876654433 3499999998876554 4566677899999999887766 44
Q ss_pred -eEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC----eEEEEECCCCCCcceEEEeecCCCceEEEEEeCC
Q 003840 660 -VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPT 734 (792)
Q Consensus 660 -~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d----~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspd 734 (792)
.|+++|+....... +....+.-+.-.|+|||++|+..++. .|.+++.+.... ..+......-..-.|+||
T Consensus 262 ~~iy~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~----~riT~~~~~~~~p~~Spd 336 (425)
T COG0823 262 PDIYLMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV----TRLTFSGGGNSNPVWSPD 336 (425)
T ss_pred ccEEEEcCCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce----eEeeccCCCCcCccCCCC
Confidence 68888888876433 44333444467899999999888765 577777765422 333333333347789999
Q ss_pred CCEEEEEEcC-C--eEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEE
Q 003840 735 YPSLLVIGCY-Q--SLELWNMSENKTMTLTAHEGLIAALAVSTETGYVAS 781 (792)
Q Consensus 735 g~~L~sgs~d-g--~I~IwDl~~~~~~~~~~h~~~V~sl~fspdg~~LaS 781 (792)
|++|+..+.. | .|.++|+.++.......+.......+|.+++++|+.
T Consensus 337 G~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~~~e~ps~~~ng~~i~~ 386 (425)
T COG0823 337 GDKIVFESSSGGQWDIDKNDLASGGKIRILTSTYLNESPSWAPNGRMIMF 386 (425)
T ss_pred CCEEEEEeccCCceeeEEeccCCCCcEEEccccccCCCCCcCCCCceEEE
Confidence 9999988854 3 377777776664433344444445556666665544
No 325
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.44 E-value=3.5e-05 Score=88.90 Aligned_cols=203 Identities=14% Similarity=0.267 Sum_probs=138.0
Q ss_pred EECCCCCeEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCC-----cEEEEEcCCC-----
Q 003840 561 RFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDG-----EIRYWSINNG----- 630 (792)
Q Consensus 561 ~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg-----~I~iwdl~~~----- 630 (792)
+|++.+..+|.|+.+|.|.+++-. -..+..|..+...|...-|.-++..++++.+.|+ .|+|||++..
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~s--~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s 107 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNSS--FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS 107 (933)
T ss_pred EEcCCCceEEEeeccccEEEeccc--ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence 467788899999999988777654 3455777777776444445555555666666654 5899998743
Q ss_pred -eeE---EEee-------CCeeEEEEecCCCEEEEEEcCCeEEEEECCC----CeEEEEecCCCCCeEEEEEcCCCCE-E
Q 003840 631 -SCT---RVFK-------GGTAQMRFQPHLGRYLAAAAENVVSILDAET----QACRLSLQGHTKPIDSVCWDPSGEL-L 694 (792)
Q Consensus 631 -~~~---~~~~-------~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t----~~~~~~l~~h~~~V~sv~~spdg~~-L 694 (792)
.++ +.+. .+..+++++.+-..+++|..+|.|.++.-+- +...........+|+.+++..++.. +
T Consensus 108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~l 187 (933)
T KOG2114|consen 108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVL 187 (933)
T ss_pred cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeE
Confidence 234 2222 2456788888989999999999999985421 1111112234678999999999986 5
Q ss_pred EEEeCCeEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcE-EEEc-ccCCCeE
Q 003840 695 ASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKT-MTLT-AHEGLIA 768 (792)
Q Consensus 695 as~s~d~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~-~~~~-~h~~~V~ 768 (792)
++++...|.+|.+. ++. .....+..++..+.|..+++...-|++++. ..|++||.+.... ..+. +|.....
T Consensus 188 Fv~Tt~~V~~y~l~-gr~-p~~~~ld~~G~~lnCss~~~~t~qfIca~~-e~l~fY~sd~~~~cfaf~~g~kk~~~ 260 (933)
T KOG2114|consen 188 FVATTEQVMLYSLS-GRT-PSLKVLDNNGISLNCSSFSDGTYQFICAGS-EFLYFYDSDGRGPCFAFEVGEKKEML 260 (933)
T ss_pred EEEecceeEEEEec-CCC-cceeeeccCCccceeeecCCCCccEEEecC-ceEEEEcCCCcceeeeecCCCeEEEE
Confidence 55666689999997 333 345557778888898888887664555544 4799999876543 3555 5655443
No 326
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.44 E-value=0.00015 Score=80.38 Aligned_cols=227 Identities=18% Similarity=0.194 Sum_probs=131.6
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEec-c---------------C-CCCEEEEEECCCCCeEEEEeC
Q 003840 512 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE-E---------------H-SSLITDVRFSPSMPRLATSSF 574 (792)
Q Consensus 512 ~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~-~---------------h-~~~V~~i~fspdg~~Lasgs~ 574 (792)
...+....|||||++||... ++.|+++++.++.....-. + . -+.-..+.|+||+++|+....
T Consensus 42 ~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~ 120 (353)
T PF00930_consen 42 PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRF 120 (353)
T ss_dssp ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEE
T ss_pred ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEE
Confidence 55688899999999999986 6799999987764332211 1 0 122356889999999888754
Q ss_pred CC-c-----------------------------------EEEEeCCCCCce-eEEe---cccCCCeEEEEEcCCCCeEE-
Q 003840 575 DK-T-----------------------------------VRVWDADNPGYS-LRTF---MGHSASVMSLDFHPNKDDLI- 613 (792)
Q Consensus 575 Dg-~-----------------------------------V~IWdl~s~~~~-i~~~---~~h~~~V~sl~fspd~~~ll- 613 (792)
|. . +.|+|+.++... +... ..-...+..+.|.+++..++
T Consensus 121 d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~ 200 (353)
T PF00930_consen 121 DEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWV 200 (353)
T ss_dssp E-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEE
T ss_pred CCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEE
Confidence 31 1 333444432211 1111 12344577888988877343
Q ss_pred EEEeCCC---cEEEEEcCCCeeEEEeeC-------CeeEEEEe-cCCCEEEEEE-cCC--eEEEEECCCCeEEEEecCCC
Q 003840 614 CSCDGDG---EIRYWSINNGSCTRVFKG-------GTAQMRFQ-PHLGRYLAAA-AEN--VVSILDAETQACRLSLQGHT 679 (792)
Q Consensus 614 ~sgs~Dg---~I~iwdl~~~~~~~~~~~-------~~~~v~~s-p~~~~lla~s-~dg--~I~i~D~~t~~~~~~l~~h~ 679 (792)
.....+. .+.++|..++.+...+.. ......+. +++..++..+ .+| .|++++...+... .+....
T Consensus 201 ~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~-~lT~G~ 279 (353)
T PF00930_consen 201 QWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPR-QLTSGD 279 (353)
T ss_dssp EEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEE-ESS-SS
T ss_pred EEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEccccccee-ccccCc
Confidence 3334332 466778877665443321 22345554 6666665544 456 6777777777644 555455
Q ss_pred CCeEE-EEEcCCCCEEE-EEeCC-----eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEc
Q 003840 680 KPIDS-VCWDPSGELLA-SVSED-----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGC 743 (792)
Q Consensus 680 ~~V~s-v~~spdg~~La-s~s~d-----~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~ 743 (792)
-.|.. +.|+++++.|+ ++..+ .|+..++..+ ..+..+.+.......+.|+|++++++..+.
T Consensus 280 ~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~---~~~~~LT~~~~~~~~~~~Spdg~y~v~~~s 347 (353)
T PF00930_consen 280 WEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSG---GEPKCLTCEDGDHYSASFSPDGKYYVDTYS 347 (353)
T ss_dssp S-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTET---TEEEESSTTSSTTEEEEE-TTSSEEEEEEE
T ss_pred eeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCC---CCeEeccCCCCCceEEEECCCCCEEEEEEc
Confidence 56754 67888877555 34432 4555566512 344555555444479999999998886654
No 327
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.40 E-value=2.1e-07 Score=103.41 Aligned_cols=197 Identities=14% Similarity=0.187 Sum_probs=131.1
Q ss_pred CCCeEEEEEcCCC--CEEEEEeCCCeEEEEECCCCce--eEEeccCCCCEEEEEECC-CCCeEEEEe----CCCcEEEEe
Q 003840 512 TSKVICCHFSSDG--KLLATGGHDKKAVLWHTDTLKS--KTNLEEHSSLITDVRFSP-SMPRLATSS----FDKTVRVWD 582 (792)
Q Consensus 512 ~~~V~~lafspdg--~~Lasgs~Dg~I~vWdl~t~~~--~~~l~~h~~~V~~i~fsp-dg~~Lasgs----~Dg~V~IWd 582 (792)
...+.|++++-+. ..+++|..+|.|.+-.+..... .....++...+++++|++ |.+.||+|- .|..+.|||
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 4457888876644 4788999999999988764322 344567889999999998 555677763 356799999
Q ss_pred CCCCC----ceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCe-eEEEeeC-CeeEEEEecCCCEEEEEE
Q 003840 583 ADNPG----YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS-CTRVFKG-GTAQMRFQPHLGRYLAAA 656 (792)
Q Consensus 583 l~s~~----~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~-~~~~~~~-~~~~v~~sp~~~~lla~s 656 (792)
+.+.- +......+......++||..+ ..++.+|.....|.++|++-.. ....+.. .+..+.+.|-...+++..
T Consensus 136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd-~klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~ 214 (783)
T KOG1008|consen 136 INSLLTVPKESPLFSSSTLDGQNSVCWLRD-TKLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSN 214 (783)
T ss_pred cccccCCCccccccccccccCccccccccC-cchhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceecc
Confidence 98731 111111123455668999855 4567788888899999998322 1222222 344566777556677777
Q ss_pred cCCeEEEEEC-CCCeE-EEEecCC----CCCeEEEEEcCCCC-EEEEEeCC--eEEEEECCC
Q 003840 657 AENVVSILDA-ETQAC-RLSLQGH----TKPIDSVCWDPSGE-LLASVSED--SVRVWTVGS 709 (792)
Q Consensus 657 ~dg~I~i~D~-~t~~~-~~~l~~h----~~~V~sv~~spdg~-~Las~s~d--~I~IwDl~s 709 (792)
.||.|.+||. ++-+. +..+... ...+..++|+|... .++++..| +|++||+..
T Consensus 215 ~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 215 SDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred ccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 7999999994 33322 2222211 22489999999654 67777777 899999854
No 328
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.39 E-value=8.8e-05 Score=85.68 Aligned_cols=189 Identities=11% Similarity=0.122 Sum_probs=130.6
Q ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCC-EEEEEECCCCCeEEEEeCCCc-----EEEEeCCCC-----C
Q 003840 519 HFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSL-ITDVRFSPSMPRLATSSFDKT-----VRVWDADNP-----G 587 (792)
Q Consensus 519 afspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~-V~~i~fspdg~~Lasgs~Dg~-----V~IWdl~s~-----~ 587 (792)
+|++.+..+|.|+.+|.|.+++- ....+..+..+... |..+-......+|++.+.|+. |+|||++.. .
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP 108 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP 108 (933)
T ss_pred EEcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence 46788889999999999988763 34555677777766 444433334467888777654 899999752 1
Q ss_pred cee---EEec----ccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcC--CCeeE-----EEeeCCeeEEEEecCCCEEE
Q 003840 588 YSL---RTFM----GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN--NGSCT-----RVFKGGTAQMRFQPHLGRYL 653 (792)
Q Consensus 588 ~~i---~~~~----~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~--~~~~~-----~~~~~~~~~v~~sp~~~~ll 653 (792)
.++ +.+. ....++.+++++.+ -..+|+|-.+|.|.++.=+ ..+-. ..-+.+++.+.+..++..++
T Consensus 109 ~c~~~~ri~~~~np~~~~p~s~l~Vs~~-l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~l 187 (933)
T KOG2114|consen 109 QCLYEHRIFTIKNPTNPSPASSLAVSED-LKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVL 187 (933)
T ss_pred ceeeeeeeeccCCCCCCCcceEEEEEcc-ccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeE
Confidence 222 2222 13467888999888 4467788899999988422 11111 12245788899998888866
Q ss_pred EEEcCCeEEEEECCCCeE-EEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCC
Q 003840 654 AAAAENVVSILDAETQAC-RLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGS 709 (792)
Q Consensus 654 a~s~dg~I~i~D~~t~~~-~~~l~~h~~~V~sv~~spdg~~Las~s~d~I~IwDl~s 709 (792)
.+.....|.+|.+....+ ...+..|...+.|..+++...-|++++...|.+||...
T Consensus 188 Fv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e~l~fY~sd~ 244 (933)
T KOG2114|consen 188 FVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSEFLYFYDSDG 244 (933)
T ss_pred EEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCceEEEEcCCC
Confidence 666677888888875543 44477788899999998766657777777899999863
No 329
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.39 E-value=8.4e-05 Score=78.50 Aligned_cols=191 Identities=14% Similarity=0.161 Sum_probs=135.3
Q ss_pred CeEEEEEcCCCCeEEEEEeCCCc-EEEEEcCCCeeEEEeeCCe-----eEEEEecCCCEEEEEEc-----CCeEEEEECC
Q 003840 599 SVMSLDFHPNKDDLICSCDGDGE-IRYWSINNGSCTRVFKGGT-----AQMRFQPHLGRYLAAAA-----ENVVSILDAE 667 (792)
Q Consensus 599 ~V~sl~fspd~~~ll~sgs~Dg~-I~iwdl~~~~~~~~~~~~~-----~~v~~sp~~~~lla~s~-----dg~I~i~D~~ 667 (792)
....++.+|.....++.+-.-|+ ..+||..++.....+.... -..+|++++.+|++.-. .|.|-|||..
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~ 85 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAA 85 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECc
Confidence 45578889977778878877665 6789999999887765432 23689999999988765 4799999999
Q ss_pred -CCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-------------------eEEEEECCCCCCcceEEE--e--ecCC
Q 003840 668 -TQACRLSLQGHTKPIDSVCWDPSGELLASVSED-------------------SVRVWTVGSGSEGECVHE--L--SCNG 723 (792)
Q Consensus 668 -t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-------------------~I~IwDl~s~~~~~~i~~--~--~~~~ 723 (792)
+.+.+.++..|.-.-..+.+.|||+.|+++..+ .+.+.|..++ +.+.. + ..+.
T Consensus 86 ~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG---~ll~q~~Lp~~~~~ 162 (305)
T PF07433_consen 86 RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSG---ALLEQVELPPDLHQ 162 (305)
T ss_pred CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCC---ceeeeeecCccccc
Confidence 668888888877777788899999877766432 2445555555 33333 3 3366
Q ss_pred CceEEEEEeCCCCEEEEEEcCC-------eEEEEECCCCc-EEE-----EcccCCCeEEEEEeCCCCEEEEEe-CCCcEE
Q 003840 724 NKFHSCVFHPTYPSLLVIGCYQ-------SLELWNMSENK-TMT-----LTAHEGLIAALAVSTETGYVASAS-HDKFVK 789 (792)
Q Consensus 724 ~~i~si~fspdg~~L~sgs~dg-------~I~IwDl~~~~-~~~-----~~~h~~~V~sl~fspdg~~LaSgs-~DG~I~ 789 (792)
..|..+++.++|..++..-..| -|.+++....- .+. ...-.+.|-+|+++.++.++++.+ .-|.+.
T Consensus 163 lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~ 242 (305)
T PF07433_consen 163 LSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVA 242 (305)
T ss_pred cceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEE
Confidence 7899999999998666665444 35555544421 111 123457899999999998775544 567888
Q ss_pred EeC
Q 003840 790 LWK 792 (792)
Q Consensus 790 IWd 792 (792)
+||
T Consensus 243 ~~d 245 (305)
T PF07433_consen 243 VWD 245 (305)
T ss_pred EEE
Confidence 995
No 330
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.36 E-value=0.00042 Score=77.82 Aligned_cols=90 Identities=11% Similarity=0.075 Sum_probs=70.2
Q ss_pred eEEEEECCCCCCcceEEEe-ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEE
Q 003840 701 SVRVWTVGSGSEGECVHEL-SCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYV 779 (792)
Q Consensus 701 ~I~IwDl~s~~~~~~i~~~-~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~~~~~h~~~V~sl~fspdg~~L 779 (792)
.-++|++...+ ..++... ......+.+++++|+...++.|+.||.|.+||...+..... ...-.++.++|+|+|.+|
T Consensus 237 d~ciYE~~r~k-lqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~-ka~~~P~~iaWHp~gai~ 314 (545)
T PF11768_consen 237 DSCIYECSRNK-LQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA-KAEFIPTLIAWHPDGAIF 314 (545)
T ss_pred EEEEEEeecCc-eeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee-eecccceEEEEcCCCcEE
Confidence 35667775432 2333222 23566899999999999999999999999999987754433 445668899999999999
Q ss_pred EEEeCCCcEEEeC
Q 003840 780 ASASHDKFVKLWK 792 (792)
Q Consensus 780 aSgs~DG~I~IWd 792 (792)
++|++-|.|.+||
T Consensus 315 ~V~s~qGelQ~FD 327 (545)
T PF11768_consen 315 VVGSEQGELQCFD 327 (545)
T ss_pred EEEcCCceEEEEE
Confidence 9999999999997
No 331
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.36 E-value=0.00063 Score=76.07 Aligned_cols=252 Identities=15% Similarity=0.132 Sum_probs=167.5
Q ss_pred EEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeC-CCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEE
Q 003840 536 AVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF-DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLIC 614 (792)
Q Consensus 536 I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~-Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~ 614 (792)
+.+++..+......+..+. ....+.+.+++..++.... ...+.+.+... .............-..+++++.+..+++
T Consensus 13 ~~v~~~~~~~~~~~~~~~~-~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~-n~~~~~~~~g~~~p~~i~v~~~~~~vyv 90 (381)
T COG3391 13 VSVINTGTNKVTAAISLGR-GPGGVAVNPDGTQVYVANSGSNDVSVIDATS-NTVTQSLSVGGVYPAGVAVNPAGNKVYV 90 (381)
T ss_pred eEEEeecccEEEEEeecCC-CCceeEEcCccCEEEEEeecCceeeeccccc-ceeeeeccCCCccccceeeCCCCCeEEE
Confidence 5666665555555544333 5567788888865544432 22344444441 2111111111134457888999888888
Q ss_pred EEeCCCcEEEEEcCCCeeEEEeeC--CeeEEEEecCCCEEEEEEc---CCeEEEEECCCCeEEEEecCCCCCeEEEEEcC
Q 003840 615 SCDGDGEIRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYLAAAA---ENVVSILDAETQACRLSLQGHTKPIDSVCWDP 689 (792)
Q Consensus 615 sgs~Dg~I~iwdl~~~~~~~~~~~--~~~~v~~sp~~~~lla~s~---dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~sp 689 (792)
+...+..|.+.|..+.++...... ....++++++++.++++.. ++.+.+.|..+.+.+.+......+ ..++++|
T Consensus 91 ~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p 169 (381)
T COG3391 91 TTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDP 169 (381)
T ss_pred ecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECC
Confidence 888889999999888877766543 4567899999988888776 689999999999888876554445 8899999
Q ss_pred CCCEEEEEeCC--eEEEEECCCCCCcc-eEEEeecCCCceEEEEEeCCCCEEEEEEcC---CeEEEEECCCCcEEEEc-c
Q 003840 690 SGELLASVSED--SVRVWTVGSGSEGE-CVHELSCNGNKFHSCVFHPTYPSLLVIGCY---QSLELWNMSENKTMTLT-A 762 (792)
Q Consensus 690 dg~~Las~s~d--~I~IwDl~s~~~~~-~i~~~~~~~~~i~si~fspdg~~L~sgs~d---g~I~IwDl~~~~~~~~~-~ 762 (792)
+|..++.+..+ .|.++|........ ..............+.+.+++.++++.... +.+.+.|..++...... .
T Consensus 170 ~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~ 249 (381)
T COG3391 170 DGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLP 249 (381)
T ss_pred CCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccc
Confidence 99977777633 89999976542111 000012223445778999999987777665 48999999998877542 1
Q ss_pred cCC-CeEEEEEeCCCCEEEEEeCC-CcEEE
Q 003840 763 HEG-LIAALAVSTETGYVASASHD-KFVKL 790 (792)
Q Consensus 763 h~~-~V~sl~fspdg~~LaSgs~D-G~I~I 790 (792)
-.. ....+.++|+|+++.+.... +.|.+
T Consensus 250 ~~~~~~~~v~~~p~g~~~yv~~~~~~~V~v 279 (381)
T COG3391 250 VGSGAPRGVAVDPAGKAAYVANSQGGTVSV 279 (381)
T ss_pred cccCCCCceeECCCCCEEEEEecCCCeEEE
Confidence 112 56678899999988877443 44544
No 332
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.35 E-value=1.3e-06 Score=90.84 Aligned_cols=159 Identities=12% Similarity=0.138 Sum_probs=119.3
Q ss_pred EEEeCCCcEEEEEcCCCeeEEE-eeCCeeEEEEecCCCEEEEEEcCCeEEEEECCCC-----eEEEEecCCCCCeEEEEE
Q 003840 614 CSCDGDGEIRYWSINNGSCTRV-FKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQ-----ACRLSLQGHTKPIDSVCW 687 (792)
Q Consensus 614 ~sgs~Dg~I~iwdl~~~~~~~~-~~~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~-----~~~~~l~~h~~~V~sv~~ 687 (792)
++.+.+-.|-+-|++++.--.. -+..+....|.-.++.++.|+.+|.|.++|++.+ .+...+. |...|+++..
T Consensus 228 fs~G~sqqv~L~nvetg~~qsf~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ssvtslq~ 306 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQSFQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSSVTSLQI 306 (425)
T ss_pred ecccccceeEEEEeecccccccccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCcchhhhhh
Confidence 4566688888999988754322 3456667778888899999999999999999875 2333333 8899999887
Q ss_pred cC-CCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEE--EEeCCCCEEEEEEcCCeEEEEECCCCcEEEEcc-
Q 003840 688 DP-SGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSC--VFHPTYPSLLVIGCYQSLELWNMSENKTMTLTA- 762 (792)
Q Consensus 688 sp-dg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si--~fspdg~~L~sgs~dg~I~IwDl~~~~~~~~~~- 762 (792)
-. ++.+|++.+.+ +|++||++.-+..+.+..+.+|-+.-..+ .+.+....|++++.|...+||.++.+.++....
T Consensus 307 Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf 386 (425)
T KOG2695|consen 307 LQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPF 386 (425)
T ss_pred hccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCC
Confidence 66 67777777777 99999998775555688888887654443 455677889999999999999999998884333
Q ss_pred ----cCCCeEEEEEe
Q 003840 763 ----HEGLIAALAVS 773 (792)
Q Consensus 763 ----h~~~V~sl~fs 773 (792)
.+..+.+++|.
T Consensus 387 ~~s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 387 PYSASEVDIPSVAFD 401 (425)
T ss_pred CCccccccccceehh
Confidence 23355666664
No 333
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.35 E-value=1.6e-06 Score=62.73 Aligned_cols=38 Identities=29% Similarity=0.543 Sum_probs=36.3
Q ss_pred eeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 003840 503 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWH 540 (792)
Q Consensus 503 ~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWd 540 (792)
+.+..+++|.+.|++|+|+|++++|++|+.|+.|+|||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 56789999999999999999999999999999999997
No 334
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.32 E-value=0.00015 Score=83.21 Aligned_cols=181 Identities=8% Similarity=-0.053 Sum_probs=114.2
Q ss_pred cCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee--CCeeEEEEecCCCEEEEEEcC----CeEEEEECCCCeEEEEecCCC
Q 003840 606 HPNKDDLICSCDGDGEIRYWSINNGSCTRVFK--GGTAQMRFQPHLGRYLAAAAE----NVVSILDAETQACRLSLQGHT 679 (792)
Q Consensus 606 spd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~--~~~~~v~~sp~~~~lla~s~d----g~I~i~D~~t~~~~~~l~~h~ 679 (792)
.+||..+..+.-..+.+.++|..+.+....+. +....+.++++++++++++.+ ..+...+..+...+..+...
T Consensus 201 pnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~- 279 (635)
T PRK02888 201 PNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIA- 279 (635)
T ss_pred CCCCCEeecccceeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchH-
Confidence 44554444444445677788888777666543 334557899999998888632 24444444433322222211
Q ss_pred CCeEEEEEcCCCCEEEEEeCCeEEEEECCCCC--CcceEEEeecCCCceEEEEEeCCCCEEEEEEc-CCeEEEEECCCCc
Q 003840 680 KPIDSVCWDPSGELLASVSEDSVRVWTVGSGS--EGECVHELSCNGNKFHSCVFHPTYPSLLVIGC-YQSLELWNMSENK 756 (792)
Q Consensus 680 ~~V~sv~~spdg~~Las~s~d~I~IwDl~s~~--~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~-dg~I~IwDl~~~~ 756 (792)
.+ ..+.++|++... ..+.|.++|.++.. ....+..+ .-....+.|.++|||+++++++. +.+|.|+|+.+.+
T Consensus 280 -~i--ea~vkdGK~~~V-~gn~V~VID~~t~~~~~~~v~~yI-PVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k 354 (635)
T PRK02888 280 -RI--EEAVKAGKFKTI-GGSKVPVVDGRKAANAGSALTRYV-PVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLD 354 (635)
T ss_pred -HH--HHhhhCCCEEEE-CCCEEEEEECCccccCCcceEEEE-ECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhh
Confidence 01 133457887665 34489999998610 11233333 34567889999999999888776 6799999998865
Q ss_pred E------------EEEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003840 757 T------------MTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 792 (792)
Q Consensus 757 ~------------~~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd 792 (792)
. +....-.......+|+.+|..+.|.--|..|..||
T Consensus 355 ~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn 402 (635)
T PRK02888 355 DLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWN 402 (635)
T ss_pred hhhhccCCccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEe
Confidence 3 21111223344678999998888888899999996
No 335
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.30 E-value=1.2e-05 Score=91.64 Aligned_cols=259 Identities=14% Similarity=0.120 Sum_probs=154.1
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCce-eEEe
Q 003840 515 VICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYS-LRTF 593 (792)
Q Consensus 515 V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~-i~~~ 593 (792)
++++||+|..-.||.|-.-|.+.||...+.+.-.....|..+|..+.|+++|..|+++..-|.|.+|.++-.+.. ...+
T Consensus 62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~ 141 (1416)
T KOG3617|consen 62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNI 141 (1416)
T ss_pred hhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchh
Confidence 567999999989999999999999999887777777889999999999999999999999999999988742221 1111
Q ss_pred cccC--CC--eEEEEEcCCCCeE-----EEEEeCCCcEE-EEEcCCCeeEEEeeCCeeEEEEecCCCEEEEEEcCCeEEE
Q 003840 594 MGHS--AS--VMSLDFHPNKDDL-----ICSCDGDGEIR-YWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSI 663 (792)
Q Consensus 594 ~~h~--~~--V~sl~fspd~~~l-----l~sgs~Dg~I~-iwdl~~~~~~~~~~~~~~~v~~sp~~~~lla~s~dg~I~i 663 (792)
..|. .. ..|..+++++..+ +++.+++..+- .++.+.....+.. .-.-.+++..+++++.+|+|+.
T Consensus 142 ~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~-----~ksgv~~g~~F~~~~~~GtVyy 216 (1416)
T KOG3617|consen 142 MQHELNDQLTLWCFRLSYDREEKFKLAKAAVTGDESALDEPFNWKESLAERSD-----EKSGVPKGTEFLFAGKSGTVYY 216 (1416)
T ss_pred hhhHhhceeeEEEEecCCChHHhhhhhhhhccCchhhhcccccCccchhhccc-----cccCCCCCcEEEEEcCCceEEE
Confidence 1222 22 3344445553322 22233333332 4443321111111 1112466778888899999988
Q ss_pred EECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCC-------------cce------------E-
Q 003840 664 LDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSE-------------GEC------------V- 716 (792)
Q Consensus 664 ~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~-------------~~~------------i- 716 (792)
.|-... .+...+. .+. ..+-|.+...-|++...+ ++.+|-+..... ... +
T Consensus 217 vdq~g~-~~~V~k~-dS~-vQmLf~~~~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEssGvLr 293 (1416)
T KOG3617|consen 217 VDQNGR-QRTVHKL-DSE-VQMLFMGYCEAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESSGVLR 293 (1416)
T ss_pred EcCCCc-EEEEEEc-cch-HHHHHhcccceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCcccccccccccc
Confidence 885433 2222221 111 123344444444444444 333333221100 000 0
Q ss_pred --EEe-ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEE-CCCC-------cEEEE---cccCCCeEEEEEeCCCCEEEE
Q 003840 717 --HEL-SCNGNKFHSCVFHPTYPSLLVIGCYQSLELWN-MSEN-------KTMTL---TAHEGLIAALAVSTETGYVAS 781 (792)
Q Consensus 717 --~~~-~~~~~~i~si~fspdg~~L~sgs~dg~I~IwD-l~~~-------~~~~~---~~h~~~V~sl~fspdg~~LaS 781 (792)
..+ ...+..+.+++++..+..|+.|...|.+.+|- +.++ ....+ ....+.|+.+.|.+-...++.
T Consensus 294 ~~eKyg~e~ge~~~c~cY~~~~~~l~agt~~gnv~~w~~v~~~f~g~p~~d~w~l~~~~e~~g~I~~i~Wg~~k~~~av 372 (1416)
T KOG3617|consen 294 KSEKYGLELGEGILCMCYGEKEIRLWAGTKEGNVTIWLDVNKGFQGDPTIDVWTLNGKRESLGKISLIRWGPIKSTAAV 372 (1416)
T ss_pred CCcchhhhcCCceEEEEEeccceEEEecccCCcEEEeeecCccccCCCCcceEEecCchhhccceEEEEeccccchhhh
Confidence 000 01245689999999999999999999999994 3331 11222 234568999999885554443
No 336
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.29 E-value=1.6e-05 Score=90.68 Aligned_cols=109 Identities=16% Similarity=0.231 Sum_probs=84.9
Q ss_pred EEEEEcCCCCEEEEEe----CCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeE
Q 003840 516 ICCHFSSDGKLLATGG----HDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLR 591 (792)
Q Consensus 516 ~~lafspdg~~Lasgs----~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~ 591 (792)
+-..|+|...++|+++ ..|+|.||- ++|++-.... ..-.+++++|+|..-.|+.|=.-|.+.+|...+ .+...
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~-~e~ht 95 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNT-TETHT 95 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccChHHHHHhhccccceeEEEecCC-ceeee
Confidence 4457888888888876 358888884 6666443332 223367799999988899998999999999986 45555
Q ss_pred EecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcC
Q 003840 592 TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN 628 (792)
Q Consensus 592 ~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~ 628 (792)
....|..+|..+.|+++|..++ ++..-|.|.+|.+.
T Consensus 96 v~~th~a~i~~l~wS~~G~~l~-t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 96 VVETHPAPIQGLDWSHDGTVLM-TLDNPGSVHLWRYD 131 (1416)
T ss_pred eccCCCCCceeEEecCCCCeEE-EcCCCceeEEEEee
Confidence 5667999999999999987555 99999999999876
No 337
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.28 E-value=0.00012 Score=87.57 Aligned_cols=227 Identities=13% Similarity=0.172 Sum_probs=132.4
Q ss_pred CCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCee
Q 003840 553 HSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC 632 (792)
Q Consensus 553 h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~ 632 (792)
..+.|.++.|.-+..-|+.+..+|.|.+-|..+. .+.....-...|.+++|+||...+ +..+.+.+|.+-+- +...
T Consensus 67 gd~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~--~~eivg~vd~GI~aaswS~Dee~l-~liT~~~tll~mT~-~f~~ 142 (1265)
T KOG1920|consen 67 GDDEIVSVQFLADTNSICVITALGDIILVDPETL--ELEIVGNVDNGISAASWSPDEELL-ALITGRQTLLFMTK-DFEP 142 (1265)
T ss_pred CCcceEEEEEecccceEEEEecCCcEEEEccccc--ceeeeeeccCceEEEeecCCCcEE-EEEeCCcEEEEEec-cccc
Confidence 3468999999999999999999999999988763 333344456789999999997644 45555566655322 1111
Q ss_pred EEEeeCCeeEEEEecCCCEEEEEEcCC----------eEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEE-----
Q 003840 633 TRVFKGGTAQMRFQPHLGRYLAAAAEN----------VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASV----- 697 (792)
Q Consensus 633 ~~~~~~~~~~v~~sp~~~~lla~s~dg----------~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~----- 697 (792)
+....- ...-.+. +.++.++... .....+............-...-++|+|--||.|+++.
T Consensus 143 i~E~~L---~~d~~~~-sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~ 218 (1265)
T KOG1920|consen 143 IAEKPL---DADDERK-SKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESE 218 (1265)
T ss_pred hhcccc---ccccccc-cccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEecc
Confidence 111000 0000000 1112222211 11111110000000000011223568999999999983
Q ss_pred eC-CeEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEc---CCeEEEEECCCCcEE----EEcccCCCeEE
Q 003840 698 SE-DSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGC---YQSLELWNMSENKTM----TLTAHEGLIAA 769 (792)
Q Consensus 698 s~-d~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~---dg~I~IwDl~~~~~~----~~~~h~~~V~s 769 (792)
.. ..|+|||-+ + ..-..-....+.-.+++|-|.|..+++... ++.|.+|.-+..+.- .+......|..
T Consensus 219 ~~~RkirV~drE-g---~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~ 294 (1265)
T KOG1920|consen 219 TGTRKIRVYDRE-G---ALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEE 294 (1265)
T ss_pred CCceeEEEeccc-c---hhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchhe
Confidence 33 279999975 2 111122223344568899999999988754 457999986654322 22333445999
Q ss_pred EEEeCCCCEEEE---EeCCCcEEEe
Q 003840 770 LAVSTETGYVAS---ASHDKFVKLW 791 (792)
Q Consensus 770 l~fspdg~~LaS---gs~DG~I~IW 791 (792)
++|+.++.+||+ +.....|++|
T Consensus 295 L~Wns~sdiLAv~~~~~e~~~v~lw 319 (1265)
T KOG1920|consen 295 LAWNSNSDILAVVTSNLENSLVQLW 319 (1265)
T ss_pred eeecCCCCceeeeecccccceEEEE
Confidence 999999999987 4444559998
No 338
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.27 E-value=9.7e-05 Score=83.12 Aligned_cols=202 Identities=16% Similarity=0.177 Sum_probs=129.0
Q ss_pred EEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEe---CC-CcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCe
Q 003840 536 AVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSS---FD-KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDD 611 (792)
Q Consensus 536 I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs---~D-g~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ 611 (792)
+.+-|.+ +.....+......+..-+|++++..++... .. ..++++|++++..... .. ..+.-....|+|||+.
T Consensus 175 l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i-~~-~~g~~~~P~fspDG~~ 251 (425)
T COG0823 175 LALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVI-LN-FNGNNGAPAFSPDGSK 251 (425)
T ss_pred EEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCcccee-ec-cCCccCCccCCCCCCE
Confidence 3333444 555555665666778889999998765542 22 4589999987443222 11 3333446789999999
Q ss_pred EEEEEeCCCc--EEEEEcCCCeeEEEe--eCCeeEEEEecCCCEEEEEEcCC---eEEEEECCCCeEEEEecCCCCCeEE
Q 003840 612 LICSCDGDGE--IRYWSINNGSCTRVF--KGGTAQMRFQPHLGRYLAAAAEN---VVSILDAETQACRLSLQGHTKPIDS 684 (792)
Q Consensus 612 ll~sgs~Dg~--I~iwdl~~~~~~~~~--~~~~~~v~~sp~~~~lla~s~dg---~I~i~D~~t~~~~~~l~~h~~~V~s 684 (792)
++++...||. |+++|+..+...+.. .+....-.|+|+|.+++.++..+ .|.++|.+......... ....-.+
T Consensus 252 l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~-~~~~~~~ 330 (425)
T COG0823 252 LAFSSSRDGSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTF-SGGGNSN 330 (425)
T ss_pred EEEEECCCCCccEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeec-cCCCCcC
Confidence 9999988886 555677766644422 22334567999999998887743 68888888775533222 2222227
Q ss_pred EEEcCCCCEEEEEeC--C--eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCC
Q 003840 685 VCWDPSGELLASVSE--D--SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ 745 (792)
Q Consensus 685 v~~spdg~~Las~s~--d--~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg 745 (792)
-.|+|||++|+..+. + .|.++|+.++.. +..+ ........-.|.++++.|+..+..+
T Consensus 331 p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~---~~~l-t~~~~~e~ps~~~ng~~i~~~s~~~ 391 (425)
T COG0823 331 PVWSPDGDKIVFESSSGGQWDIDKNDLASGGK---IRIL-TSTYLNESPSWAPNGRMIMFSSGQG 391 (425)
T ss_pred ccCCCCCCEEEEEeccCCceeeEEeccCCCCc---EEEc-cccccCCCCCcCCCCceEEEeccCC
Confidence 789999999998873 3 477788776543 2222 2233344557888888777665543
No 339
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.27 E-value=0.00027 Score=79.89 Aligned_cols=220 Identities=11% Similarity=0.118 Sum_probs=120.6
Q ss_pred eeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEE-eCCC
Q 003840 507 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVW-DADN 585 (792)
Q Consensus 507 ~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IW-dl~s 585 (792)
.+....-.+..+.++|+|++++++ .||...||.....+.... +....++|...+ .+|+-...+.|.|+ ++.+
T Consensus 27 ~lg~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k~~-----G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~~ 99 (443)
T PF04053_consen 27 ELGSCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNKAF-----GSGLSFVWSSRN-RYAVLESSSTIKIYKNFKN 99 (443)
T ss_dssp EEEE-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEEEE-----EE-SEEEE-TSS-EEEEE-TTS-EEEEETTEE
T ss_pred cCCCCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCccccc-----CceeEEEEecCc-cEEEEECCCeEEEEEcCcc
Confidence 344445558899999999999995 588888888554444332 234567898844 57777778889996 4432
Q ss_pred CCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCC-eeEEEEecCCCEEEEEEcCCeEEEE
Q 003840 586 PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG-TAQMRFQPHLGRYLAAAAENVVSIL 664 (792)
Q Consensus 586 ~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~-~~~v~~sp~~~~lla~s~dg~I~i~ 664 (792)
.....+.. ...+..|.. |. +|+..+ ++.|.+||+.+++.++.+... +..+.|++++.+++..+.+ .++|+
T Consensus 100 --~~~k~i~~-~~~~~~If~---G~-LL~~~~-~~~i~~yDw~~~~~i~~i~v~~vk~V~Ws~~g~~val~t~~-~i~il 170 (443)
T PF04053_consen 100 --EVVKSIKL-PFSVEKIFG---GN-LLGVKS-SDFICFYDWETGKLIRRIDVSAVKYVIWSDDGELVALVTKD-SIYIL 170 (443)
T ss_dssp ---TT------SS-EEEEE----SS-SEEEEE-TTEEEEE-TTT--EEEEESS-E-EEEEE-TTSSEEEEE-S--SEEEE
T ss_pred --ccceEEcC-CcccceEEc---Cc-EEEEEC-CCCEEEEEhhHcceeeEEecCCCcEEEEECCCCEEEEEeCC-eEEEE
Confidence 22222221 123444433 44 443444 458999999999999999877 4899999998888777655 55555
Q ss_pred ECCCC--------------eEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEeecCCCceEEEE
Q 003840 665 DAETQ--------------ACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCV 730 (792)
Q Consensus 665 D~~t~--------------~~~~~l~~h~~~V~sv~~spdg~~Las~s~d~I~IwDl~s~~~~~~i~~~~~~~~~i~si~ 730 (792)
+.+.. ..+..+ ...|.+.+|..+ .|+..+...|+.+ ..| ....+..-..++.-+.
T Consensus 171 ~~~~~~~~~~~~~g~e~~f~~~~E~---~~~IkSg~W~~d--~fiYtT~~~lkYl--~~G----e~~~i~~ld~~~yllg 239 (443)
T PF04053_consen 171 KYNLEAVAAIPEEGVEDAFELIHEI---SERIKSGCWVED--CFIYTTSNHLKYL--VNG----ETGIIAHLDKPLYLLG 239 (443)
T ss_dssp EE-HHHHHHBTTTB-GGGEEEEEEE----S--SEEEEETT--EEEEE-TTEEEEE--ETT----EEEEEEE-SS--EEEE
T ss_pred EecchhcccccccCchhceEEEEEe---cceeEEEEEEcC--EEEEEcCCeEEEE--EcC----CcceEEEcCCceEEEE
Confidence 43322 333322 467899999876 5555555566663 222 2222333345677778
Q ss_pred EeCCCCEEEEEEcCCeEEEEECC
Q 003840 731 FHPTYPSLLVIGCYQSLELWNMS 753 (792)
Q Consensus 731 fspdg~~L~sgs~dg~I~IwDl~ 753 (792)
+.+..+.++....++.|..+.+.
T Consensus 240 y~~~~~~ly~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 240 YLPKENRLYLIDRDGNVISYELD 262 (443)
T ss_dssp EETTTTEEEEE-TT--EEEEE--
T ss_pred EEccCCEEEEEECCCCEEEEEEC
Confidence 88877788888888888877665
No 340
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.27 E-value=0.00041 Score=80.22 Aligned_cols=225 Identities=14% Similarity=0.154 Sum_probs=130.5
Q ss_pred CEEEEEeCCCeEEEEECCCCceeEEeccCCCC--EEEEEECC--CCCeEEEEe---------CCCcEEEEeCCCCCceeE
Q 003840 525 KLLATGGHDKKAVLWHTDTLKSKTNLEEHSSL--ITDVRFSP--SMPRLATSS---------FDKTVRVWDADNPGYSLR 591 (792)
Q Consensus 525 ~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~--V~~i~fsp--dg~~Lasgs---------~Dg~V~IWdl~s~~~~i~ 591 (792)
..++.++.++.|+.+|.++++.+-.+...... -..+.-+| .+.+++.++ .+|.|..+|..+ ++.+-
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~T-G~~~W 189 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVET-GKLLW 189 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCC-Cceee
Confidence 57888889999999999999998877643321 01111122 123555553 467889999988 44444
Q ss_pred EecccCC--------------------CeE-EEEEcCCCCeEEEEEeCCC------------------cEEEEEcCCCee
Q 003840 592 TFMGHSA--------------------SVM-SLDFHPNKDDLICSCDGDG------------------EIRYWSINNGSC 632 (792)
Q Consensus 592 ~~~~h~~--------------------~V~-sl~fspd~~~ll~sgs~Dg------------------~I~iwdl~~~~~ 632 (792)
.+..... .|. ..++.+.+. +++.++.++ .|..+|+++++.
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g-~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~ 268 (488)
T cd00216 190 RFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTN-LVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKV 268 (488)
T ss_pred EeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCC-EEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCE
Confidence 3322110 011 233333333 444565454 799999999999
Q ss_pred EEEeeCCee---------EEEEe----cCCC---EEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEE
Q 003840 633 TRVFKGGTA---------QMRFQ----PHLG---RYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLAS 696 (792)
Q Consensus 633 ~~~~~~~~~---------~v~~s----p~~~---~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las 696 (792)
+..+..... ...+. -++. .+++++.+|.++.+|.++++.+...... ...++.++ ..++.
T Consensus 269 ~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~---~~~~~~~~--~~vyv 343 (488)
T cd00216 269 KWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV---EQPMAYDP--GLVYL 343 (488)
T ss_pred EEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee---ccccccCC--ceEEE
Confidence 887653211 01111 1222 4677778999999999999988876421 11223333 22222
Q ss_pred Ee------------------CC-eEEEEECCCCCCcceEEEeecCC--------CceEEEEEeCCCCEEEEEEcCCeEEE
Q 003840 697 VS------------------ED-SVRVWTVGSGSEGECVHELSCNG--------NKFHSCVFHPTYPSLLVIGCYQSLEL 749 (792)
Q Consensus 697 ~s------------------~d-~I~IwDl~s~~~~~~i~~~~~~~--------~~i~si~fspdg~~L~sgs~dg~I~I 749 (792)
+. .+ .|.-+|+.++ +.+....... .........-.+..|++++.||.|+.
T Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG---~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~a 420 (488)
T cd00216 344 GAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTG---KVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRA 420 (488)
T ss_pred ccccccccCcccccCCCCCCCceEEEEEeCCCC---cEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEE
Confidence 11 12 6777777776 3333332220 11111111225578999999999999
Q ss_pred EECCCCcEEE
Q 003840 750 WNMSENKTMT 759 (792)
Q Consensus 750 wDl~~~~~~~ 759 (792)
+|.++++.+.
T Consensus 421 ld~~tG~~lW 430 (488)
T cd00216 421 FDATTGKELW 430 (488)
T ss_pred EECCCCceee
Confidence 9999999883
No 341
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.24 E-value=0.0014 Score=70.11 Aligned_cols=237 Identities=15% Similarity=0.172 Sum_probs=144.4
Q ss_pred EEEEEcCCCCEEEEEe----------CCCeEEEEECCCCceeEEeccCCC-------CEEEEEECCCCCeEEEEeC--CC
Q 003840 516 ICCHFSSDGKLLATGG----------HDKKAVLWHTDTLKSKTNLEEHSS-------LITDVRFSPSMPRLATSSF--DK 576 (792)
Q Consensus 516 ~~lafspdg~~Lasgs----------~Dg~I~vWdl~t~~~~~~l~~h~~-------~V~~i~fspdg~~Lasgs~--Dg 576 (792)
-.+.++||++.+++++ ..-.|.+||..+......+.-... ....+.++.|++++++... --
T Consensus 39 ~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~ 118 (342)
T PF06433_consen 39 GNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPAT 118 (342)
T ss_dssp EEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSE
T ss_pred CceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCC
Confidence 3466899999888754 344699999999988776543221 1234577888887776643 34
Q ss_pred cEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcC-CCeeEEE----eeCCe----eEEEEec
Q 003840 577 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN-NGSCTRV----FKGGT----AQMRFQP 647 (792)
Q Consensus 577 ~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~-~~~~~~~----~~~~~----~~v~~sp 647 (792)
.|.|.|+.. ++.+..+. -.+ |.-..|.++.-|.+-+.||.+....+. .|+.... |.... ..-.+..
T Consensus 119 SVtVVDl~~-~kvv~ei~-~PG---C~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~ 193 (342)
T PF06433_consen 119 SVTVVDLAA-KKVVGEID-TPG---CWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSR 193 (342)
T ss_dssp EEEEEETTT-TEEEEEEE-GTS---EEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEET
T ss_pred eEEEEECCC-Cceeeeec-CCC---EEEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceEC
Confidence 588888886 45555443 222 222234443446677789999999988 4554422 21111 1234455
Q ss_pred CCCEEEEEEcCCeEEEEECCCCeEEE--EecCC----------CCCeEEEEEcCCCCEEEEEe--------CC---eEEE
Q 003840 648 HLGRYLAAAAENVVSILDAETQACRL--SLQGH----------TKPIDSVCWDPSGELLASVS--------ED---SVRV 704 (792)
Q Consensus 648 ~~~~lla~s~dg~I~i~D~~t~~~~~--~l~~h----------~~~V~sv~~spdg~~Las~s--------~d---~I~I 704 (792)
.++.++..+.+|.|+-.|+....... .+..- .+...-+++++....|++.- .+ .|.+
T Consensus 194 ~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv 273 (342)
T PF06433_consen 194 DGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWV 273 (342)
T ss_dssp TTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEE
T ss_pred CCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEE
Confidence 66788888999999999987764332 22110 12233477777555444321 12 5888
Q ss_pred EECCCCCCcceEEEeecCCCceEEEEEeCCCC-EEEEEE-cCCeEEEEECCCCcEEEEc
Q 003840 705 WTVGSGSEGECVHELSCNGNKFHSCVFHPTYP-SLLVIG-CYQSLELWNMSENKTMTLT 761 (792)
Q Consensus 705 wDl~s~~~~~~i~~~~~~~~~i~si~fspdg~-~L~sgs-~dg~I~IwDl~~~~~~~~~ 761 (792)
||+.+. +.+.++.. ...+.++.++.+.+ +|++.+ .++.|.|||..+++.+...
T Consensus 274 ~D~~t~---krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~ 328 (342)
T PF06433_consen 274 YDLKTH---KRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSI 328 (342)
T ss_dssp EETTTT---EEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE
T ss_pred EECCCC---eEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeeh
Confidence 888776 66666654 23577899998775 665554 4689999999999988443
No 342
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.23 E-value=0.00075 Score=70.26 Aligned_cols=198 Identities=14% Similarity=0.185 Sum_probs=115.4
Q ss_pred eeeeecCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCCceeEEeccC-CCCEEEEEECCCCCeEEEEeCCCcEEEEe
Q 003840 505 ANSVRASTSKVICCHFSSDGK-LLATGGHDKKAVLWHTDTLKSKTNLEEH-SSLITDVRFSPSMPRLATSSFDKTVRVWD 582 (792)
Q Consensus 505 ~~~l~~H~~~V~~lafspdg~-~Lasgs~Dg~I~vWdl~t~~~~~~l~~h-~~~V~~i~fspdg~~Lasgs~Dg~V~IWd 582 (792)
.+.+.+-...|..|+|+|+.+ ++++....+.|..++. +|+.+..+.-. .+....|++..++.++++.-.++.+.+++
T Consensus 14 ~~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~ 92 (248)
T PF06977_consen 14 AKPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFT 92 (248)
T ss_dssp EEE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEE
T ss_pred eeECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEE
Confidence 455667777799999999765 5566667788888886 47888777643 36688999988887777666689999999
Q ss_pred CCCCCce-----eEEec-----ccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCC---CeeEEE-----------eeC
Q 003840 583 ADNPGYS-----LRTFM-----GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN---GSCTRV-----------FKG 638 (792)
Q Consensus 583 l~s~~~~-----i~~~~-----~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~---~~~~~~-----------~~~ 638 (792)
+...... +..+. .+...+..|+|.+.++.++++. +..-..+|.+.. ...+.. +..
T Consensus 93 ~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~k-E~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (248)
T PF06977_consen 93 IDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAK-ERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVR 171 (248)
T ss_dssp E----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEE-ESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS
T ss_pred EeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEe-CCCChhhEEEccccCccceeeccccccccccceec
Confidence 9542221 11111 2456689999999988888654 454555665543 111111 123
Q ss_pred CeeEEEEecCCCEEEEEEc-CCeEEEEECCCCeEEEEecCCC---------CCeEEEEEcCCCCEEEEEeCCeEEEE
Q 003840 639 GTAQMRFQPHLGRYLAAAA-ENVVSILDAETQACRLSLQGHT---------KPIDSVCWDPSGELLASVSEDSVRVW 705 (792)
Q Consensus 639 ~~~~v~~sp~~~~lla~s~-dg~I~i~D~~t~~~~~~l~~h~---------~~V~sv~~spdg~~Las~s~d~I~Iw 705 (792)
....+.++|..+.+++-+. +..|.++| ..++++..+.-.. ..--.|+|+++|++.++.-.+..++|
T Consensus 172 d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsEpNlfy~f 247 (248)
T PF06977_consen 172 DLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSEPNLFYRF 247 (248)
T ss_dssp ---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEETTTEEEEE
T ss_pred cccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcCCceEEEe
Confidence 4567889999888877766 56888888 5666555443221 23668999999987776655555544
No 343
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.22 E-value=2.7e-06 Score=61.58 Aligned_cols=39 Identities=41% Similarity=0.557 Sum_probs=36.8
Q ss_pred CceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEe
Q 003840 544 LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 582 (792)
Q Consensus 544 ~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWd 582 (792)
++++.++.+|...|++|+|+|++.+|++++.|+.|+|||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 367889999999999999999999999999999999997
No 344
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.22 E-value=6.4e-05 Score=86.25 Aligned_cols=180 Identities=17% Similarity=0.243 Sum_probs=124.2
Q ss_pred CCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeE-
Q 003840 555 SLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT- 633 (792)
Q Consensus 555 ~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~- 633 (792)
..++|++++ ++.|+.|+.+|.|++++... .. .+...|... ..+| .++++|+.||+|.|..+-+.+..
T Consensus 40 D~is~~av~--~~~~~~GtH~g~v~~~~~~~--~~-~~~~~~s~~------~~~G-ey~asCS~DGkv~I~sl~~~~~~~ 107 (846)
T KOG2066|consen 40 DAISCCAVH--DKFFALGTHRGAVYLTTCQG--NP-KTNFDHSSS------ILEG-EYVASCSDDGKVVIGSLFTDDEIT 107 (846)
T ss_pred hHHHHHHhh--cceeeeccccceEEEEecCC--cc-ccccccccc------ccCC-ceEEEecCCCcEEEeeccCCccce
Confidence 456666665 56899999999999999874 33 444445443 3444 46779999999999998877654
Q ss_pred -EEeeCCeeEEEEecC-----CCEEEEEEcCCeEEEEECCCC--eEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEE
Q 003840 634 -RVFKGGTAQMRFQPH-----LGRYLAAAAENVVSILDAETQ--ACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVW 705 (792)
Q Consensus 634 -~~~~~~~~~v~~sp~-----~~~lla~s~dg~I~i~D~~t~--~~~~~l~~h~~~V~sv~~spdg~~Las~s~d~I~Iw 705 (792)
..|+.++..++++|+ .+.+++|+.-| +.++.-+-. +.-..+....++|.+++|. |++||-++++.|+||
T Consensus 108 ~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~Gv~vy 184 (846)
T KOG2066|consen 108 QYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDGVKVY 184 (846)
T ss_pred eEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCCcEEE
Confidence 456788999999998 46788888888 777654321 1112345567899999996 788998888899999
Q ss_pred ECCCCCCcceEEEeecCC------CceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 003840 706 TVGSGSEGECVHELSCNG------NKFHSCVFHPTYPSLLVIGCYQSLELWNMSE 754 (792)
Q Consensus 706 Dl~s~~~~~~i~~~~~~~------~~i~si~fspdg~~L~sgs~dg~I~IwDl~~ 754 (792)
|+.+.. .+..+.... .....+.|.++.+ |+ .|...+|+|..++.
T Consensus 185 d~~~~~---~l~~i~~p~~~~R~e~fpphl~W~~~~~-LV-IGW~d~v~i~~I~~ 234 (846)
T KOG2066|consen 185 DTPTRQ---RLTNIPPPSQSVRPELFPPHLHWQDEDR-LV-IGWGDSVKICSIKK 234 (846)
T ss_pred eccccc---eeeccCCCCCCCCcccCCCceEecCCCe-EE-EecCCeEEEEEEec
Confidence 998763 333222221 1234567776654 33 44555788888773
No 345
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.21 E-value=0.0012 Score=66.81 Aligned_cols=140 Identities=14% Similarity=0.080 Sum_probs=91.8
Q ss_pred CEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEE-E
Q 003840 525 KLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMS-L 603 (792)
Q Consensus 525 ~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~s-l 603 (792)
.+++.|+..+.+...|..+|+.+.+-.- ...|.+-+.- -|++++.|++.|.+++.+..+ +..+..+... +.|.+ .
T Consensus 24 T~v~igSHs~~~~avd~~sG~~~We~il-g~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~t-Gs~~w~f~~~-~~vk~~a 99 (354)
T KOG4649|consen 24 TLVVIGSHSGIVIAVDPQSGNLIWEAIL-GVRIECSAIV-VGDFVVLGCYSGGLYFLCVKT-GSQIWNFVIL-ETVKVRA 99 (354)
T ss_pred eEEEEecCCceEEEecCCCCcEEeehhh-CceeeeeeEE-ECCEEEEEEccCcEEEEEecc-hhheeeeeeh-hhhccce
Confidence 4778888899999899988887654321 2223332222 466899999999999999998 4334433322 22222 2
Q ss_pred EEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCCee---EEEEecCCCEEEEEEcCCeEEEEECCCC
Q 003840 604 DFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTA---QMRFQPHLGRYLAAAAENVVSILDAETQ 669 (792)
Q Consensus 604 ~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~---~v~~sp~~~~lla~s~dg~I~i~D~~t~ 669 (792)
...++ ..+|+.++.|++.+..|.++..++...+.+.. .-++.+..+.++++...|.|.-...+..
T Consensus 100 ~~d~~-~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~ 167 (354)
T KOG4649|consen 100 QCDFD-GGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNPY 167 (354)
T ss_pred EEcCC-CceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEEccCCC
Confidence 22344 34888999999999999999999887764322 2345665566666666666555444443
No 346
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.19 E-value=0.00035 Score=77.95 Aligned_cols=259 Identities=13% Similarity=0.112 Sum_probs=136.0
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCC---CC---
Q 003840 514 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN---PG--- 587 (792)
Q Consensus 514 ~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s---~~--- 587 (792)
.|+++.|+++..-|++|...|.|.||.+...+... ......-..+.|.+ + ...++.-.|-|+.. +.
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~--~~~~~~~~~~~~~~----~--~~~~~~~~l~di~~r~~~~~~~ 74 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYG--NREQPPDLDYNFRR----F--SLNNSPGKLTDISDRAPPSLKE 74 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE--------------------S--------GGGSS-SEEE-GGG--TT-SE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCC--ccCCCcccCccccc----c--cccCCCcceEEehhhCCccccc
Confidence 48999999999999999999999999876533221 00001111111111 0 00111122333322 11
Q ss_pred --ceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEe--e---------CCeeEEEEec-----CC
Q 003840 588 --YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF--K---------GGTAQMRFQP-----HL 649 (792)
Q Consensus 588 --~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~--~---------~~~~~v~~sp-----~~ 649 (792)
.+...+....+.|++++.+.-| +++.|..+|.+.|.|++....+..- . ..+.++.|.. |+
T Consensus 75 gf~P~~l~~~~~g~vtal~~S~iG--Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ 152 (395)
T PF08596_consen 75 GFLPLTLLDAKQGPVTALKNSDIG--FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDG 152 (395)
T ss_dssp EEEEEEEE---S-SEEEEEE-BTS--EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSS
T ss_pred ccCchhheeccCCcEeEEecCCCc--EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCc
Confidence 2334455567999999998554 7889999999999999988776542 1 1234455541 22
Q ss_pred ---CEEEEEEcCCeEEEEECC--C-CeE----EEEecCCCCCeEEEE-EcCC---------------------CCEEEEE
Q 003840 650 ---GRYLAAAAENVVSILDAE--T-QAC----RLSLQGHTKPIDSVC-WDPS---------------------GELLASV 697 (792)
Q Consensus 650 ---~~lla~s~dg~I~i~D~~--t-~~~----~~~l~~h~~~V~sv~-~spd---------------------g~~Las~ 697 (792)
-.+++|+..|.+.+|.+. . +.. ......+.++|..|+ |+.+ .-+++++
T Consensus 153 ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvv 232 (395)
T PF08596_consen 153 YSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVV 232 (395)
T ss_dssp SEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE
T ss_pred ccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEE
Confidence 357888999999999764 1 211 122224566666665 3221 1267777
Q ss_pred eCCeEEEEECCCCCCcceEEEeecCCCceEEEEE-----eCCCCEEEEEEcCCeEEEEECCCCcEEE-Ecc----cCCCe
Q 003840 698 SEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVF-----HPTYPSLLVIGCYQSLELWNMSENKTMT-LTA----HEGLI 767 (792)
Q Consensus 698 s~d~I~IwDl~s~~~~~~i~~~~~~~~~i~si~f-----spdg~~L~sgs~dg~I~IwDl~~~~~~~-~~~----h~~~V 767 (792)
++..|+|+...+. +..+...........+++ ...+..|++...+|.|++|.+...+.+. +.- ....+
T Consensus 233 Se~~irv~~~~~~---k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~ 309 (395)
T PF08596_consen 233 SESDIRVFKPPKS---KGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRL 309 (395)
T ss_dssp -SSEEEEE-TT------EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHH
T ss_pred cccceEEEeCCCC---cccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccc
Confidence 7779999998765 333333322223334445 2356678888999999999999988772 222 12234
Q ss_pred EEEEEeCCCCEEEEEeCC
Q 003840 768 AALAVSTETGYVASASHD 785 (792)
Q Consensus 768 ~sl~fspdg~~LaSgs~D 785 (792)
...+|+++|.+++-.+..
T Consensus 310 ~~ssis~~Gdi~~~~gps 327 (395)
T PF08596_consen 310 SSSSISRNGDIFYWTGPS 327 (395)
T ss_dssp TT-EE-TTS-EEEE-SSS
T ss_pred cccEECCCCCEEEEeCcc
Confidence 566778889877766543
No 347
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.18 E-value=0.00056 Score=76.50 Aligned_cols=220 Identities=15% Similarity=0.101 Sum_probs=151.6
Q ss_pred CCeEEEEEcCCCCEEEE-EeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeC---CCcEEEEeCCCCCc
Q 003840 513 SKVICCHFSSDGKLLAT-GGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF---DKTVRVWDADNPGY 588 (792)
Q Consensus 513 ~~V~~lafspdg~~Las-gs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~---Dg~V~IWdl~s~~~ 588 (792)
..-.+++++++++.++. ...++.|.+.|..+.+....+..-. ....++|+++++.++++.. +++|.+.|..+ ..
T Consensus 74 ~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t-~~ 151 (381)
T COG3391 74 VYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAAT-NK 151 (381)
T ss_pred ccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCC-Ce
Confidence 34567888998885544 4456899999988777776665333 6678999999988777755 67888888877 44
Q ss_pred eeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEE-E------eeCCeeEEEEecCCCEEEEEEcC---
Q 003840 589 SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR-V------FKGGTAQMRFQPHLGRYLAAAAE--- 658 (792)
Q Consensus 589 ~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~-~------~~~~~~~v~~sp~~~~lla~s~d--- 658 (792)
.+.+......+ ..+++.|++..++++-..++.|.++|.......+ . .......+.+.+++.++++....
T Consensus 152 ~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~ 230 (381)
T COG3391 152 VTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGS 230 (381)
T ss_pred EEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCC
Confidence 44444433334 8999999999888777789999999988776663 1 12234568899999987776664
Q ss_pred CeEEEEECCCCeEEEEecCCCC-CeEEEEEcCCCCEEEEEeCC--eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCC
Q 003840 659 NVVSILDAETQACRLSLQGHTK-PIDSVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTY 735 (792)
Q Consensus 659 g~I~i~D~~t~~~~~~l~~h~~-~V~sv~~spdg~~Las~s~d--~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg 735 (792)
+.+.+.|..++........-.. ....+.++|+|+++.+.... .+.+.|..+......+.........+..+++.+..
T Consensus 231 ~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 310 (381)
T COG3391 231 NNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISPLY 310 (381)
T ss_pred ceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceeccceeec
Confidence 5999999999877765222122 45678899999988877544 88888887653222222222223335555555543
No 348
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.14 E-value=0.0007 Score=70.50 Aligned_cols=197 Identities=16% Similarity=0.232 Sum_probs=110.9
Q ss_pred EecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee----CCeeEEEEecCCCEEEEEEcCCeEEEEECC
Q 003840 592 TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK----GGTAQMRFQPHLGRYLAAAAENVVSILDAE 667 (792)
Q Consensus 592 ~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~----~~~~~v~~sp~~~~lla~s~dg~I~i~D~~ 667 (792)
.+.+-...+..|+|+|+.+.|+++....+.|..++.. |+.++.+. +....+++..++.++++--.++.+.++++.
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~ 94 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID 94 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence 4445566799999999999999999999999999974 77777764 345668887665444433348889988873
Q ss_pred CC------eEEEEec-----CCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCC--CCCcceEEE------eecCCCceE
Q 003840 668 TQ------ACRLSLQ-----GHTKPIDSVCWDPSGELLASVSED-SVRVWTVGS--GSEGECVHE------LSCNGNKFH 727 (792)
Q Consensus 668 t~------~~~~~l~-----~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s--~~~~~~i~~------~~~~~~~i~ 727 (792)
.. .....+. .++..+-.++|++.++.|+.+-+. -..||.+.. ......+.. .......+.
T Consensus 95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S 174 (248)
T PF06977_consen 95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLS 174 (248)
T ss_dssp ---TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---
T ss_pred ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecccc
Confidence 31 1111111 244568999999987766666655 555666543 111111111 112334578
Q ss_pred EEEEeCCCCEEEEEEc-CCeEEEEECCCCcEE---EEcc--c-----CCCeEEEEEeCCCCEEEEEeCCCcEEEe
Q 003840 728 SCVFHPTYPSLLVIGC-YQSLELWNMSENKTM---TLTA--H-----EGLIAALAVSTETGYVASASHDKFVKLW 791 (792)
Q Consensus 728 si~fspdg~~L~sgs~-dg~I~IwDl~~~~~~---~~~~--h-----~~~V~sl~fspdg~~LaSgs~DG~I~IW 791 (792)
.++++|....|++.+. ...|.++| .+++.+ .+.. | -.....|+|.++|++.+ .++-+..++|
T Consensus 175 ~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYI-vsEpNlfy~f 247 (248)
T PF06977_consen 175 GLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYI-VSEPNLFYRF 247 (248)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEE-EETTTEEEEE
T ss_pred ceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEE-EcCCceEEEe
Confidence 9999998766666555 46888899 555554 2222 1 12467999999986555 4577766665
No 349
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=98.06 E-value=0.0034 Score=66.74 Aligned_cols=223 Identities=16% Similarity=0.185 Sum_probs=124.4
Q ss_pred cCCCCEEEEEeCCCeEEEEECCC-CceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEE-------
Q 003840 521 SSDGKLLATGGHDKKAVLWHTDT-LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRT------- 592 (792)
Q Consensus 521 spdg~~Lasgs~Dg~I~vWdl~t-~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~------- 592 (792)
...++.|+.|+.+| |++|++.. .+...... ...|..+...++-+.|++-+ |+.++++++..-......
T Consensus 4 ~~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~--~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~ 79 (275)
T PF00780_consen 4 DSWGDRLLVGTEDG-LYVYDLSDPSKPTRILK--LSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPK 79 (275)
T ss_pred ccCCCEEEEEECCC-EEEEEecCCccceeEee--cceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccc
Confidence 34577999999998 89999833 33333332 23399999999877776665 499999999752211100
Q ss_pred ------ecccCCCeEEEE--EcCCCCeEEEEEeCCCcEEEEEcCCC-----eeEEEee--CCeeEEEEecCCCEEEEEEc
Q 003840 593 ------FMGHSASVMSLD--FHPNKDDLICSCDGDGEIRYWSINNG-----SCTRVFK--GGTAQMRFQPHLGRYLAAAA 657 (792)
Q Consensus 593 ------~~~h~~~V~sl~--fspd~~~ll~sgs~Dg~I~iwdl~~~-----~~~~~~~--~~~~~v~~sp~~~~lla~s~ 657 (792)
.......+..++ -...+...++++ ....|.+|.+... +..+.+. .....+.|. ++.++++.
T Consensus 80 ~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va-~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~~- 155 (275)
T PF00780_consen 80 SRSLPTKLPETKGVSFFAVNGGHEGSRRLCVA-VKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVGT- 155 (275)
T ss_pred cccccccccccCCeeEEeeccccccceEEEEE-ECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEEe-
Confidence 111223344444 112333344333 3558888877653 3444443 456667777 45666665
Q ss_pred CCeEEEEECCCCeEEEEecCC------------CCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEeecCCCc
Q 003840 658 ENVVSILDAETQACRLSLQGH------------TKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNK 725 (792)
Q Consensus 658 dg~I~i~D~~t~~~~~~l~~h------------~~~V~sv~~spdg~~Las~s~d~I~IwDl~s~~~~~~i~~~~~~~~~ 725 (792)
.+...++|+.++.....+... ..++..+.. +++++|++ .++.-.+.|. .|.... ...+.-. ..
T Consensus 156 ~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~-~~~~g~fv~~-~G~~~r-~~~i~W~-~~ 230 (275)
T PF00780_consen 156 SKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLC-YDNIGVFVNK-NGEPSR-KSTIQWS-SA 230 (275)
T ss_pred CCceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEE-ecceEEEEcC-CCCcCc-ccEEEcC-Cc
Confidence 455788898876554333211 123333333 34566654 3343333343 232211 1122221 24
Q ss_pred eEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEE
Q 003840 726 FHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMT 759 (792)
Q Consensus 726 i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~~ 759 (792)
...+++ ...||++.+. +.|.||++.+++++.
T Consensus 231 p~~~~~--~~pyli~~~~-~~iEV~~~~~~~lvQ 261 (275)
T PF00780_consen 231 PQSVAY--SSPYLIAFSS-NSIEVRSLETGELVQ 261 (275)
T ss_pred hhEEEE--ECCEEEEECC-CEEEEEECcCCcEEE
Confidence 445555 3457777666 559999999998773
No 350
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=98.05 E-value=0.0036 Score=72.92 Aligned_cols=184 Identities=11% Similarity=0.052 Sum_probs=112.9
Q ss_pred CCEEEEEeCCCeEEEEECCCCceeEEeccCC-CCEE---E-------EEECCCCCeEEEEeCCCcEEEEeCCCCCceeEE
Q 003840 524 GKLLATGGHDKKAVLWHTDTLKSKTNLEEHS-SLIT---D-------VRFSPSMPRLATSSFDKTVRVWDADNPGYSLRT 592 (792)
Q Consensus 524 g~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~-~~V~---~-------i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~ 592 (792)
+..|++++.++.|+-+|..+|+.+-.+.... ..+. + +++ .+..|++++.|+.|.-+|..+ ++.+-.
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~T-Gk~~W~ 145 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKT-GKVVWS 145 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCC-CCEEee
Confidence 4477777788899999999999887765321 1111 1 122 234678888999999999988 554443
Q ss_pred ecc--cC--CCeEE-EEEcCCCCeEEEEEe-----CCCcEEEEEcCCCeeEEEeeCCe----------------------
Q 003840 593 FMG--HS--ASVMS-LDFHPNKDDLICSCD-----GDGEIRYWSINNGSCTRVFKGGT---------------------- 640 (792)
Q Consensus 593 ~~~--h~--~~V~s-l~fspd~~~ll~sgs-----~Dg~I~iwdl~~~~~~~~~~~~~---------------------- 640 (792)
+.. +. ..+++ ..+. + ..+++..+ .+|.|..+|.++|+.+..+....
T Consensus 146 ~~~~~~~~~~~~tssP~v~-~-g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw 223 (527)
T TIGR03075 146 KKNGDYKAGYTITAAPLVV-K-GKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTW 223 (527)
T ss_pred cccccccccccccCCcEEE-C-CEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCC
Confidence 331 11 11211 1111 2 33443222 26899999999999886643210
Q ss_pred -------------eEEEEecCCCEEEEEEcC-----C-----------eEEEEECCCCeEEEEecCCCCCeE--------
Q 003840 641 -------------AQMRFQPHLGRYLAAAAE-----N-----------VVSILDAETQACRLSLQGHTKPID-------- 683 (792)
Q Consensus 641 -------------~~v~~sp~~~~lla~s~d-----g-----------~I~i~D~~t~~~~~~l~~h~~~V~-------- 683 (792)
..+.+.+..+.++.+..+ + .|.-.|+++++.+..+......+.
T Consensus 224 ~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p 303 (527)
T TIGR03075 224 PGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEM 303 (527)
T ss_pred CCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCc
Confidence 013566666777776632 1 688889999999887765222211
Q ss_pred -EEEEcCCCC---EEEEEeCC-eEEEEECCCCCC
Q 003840 684 -SVCWDPSGE---LLASVSED-SVRVWTVGSGSE 712 (792)
Q Consensus 684 -sv~~spdg~---~Las~s~d-~I~IwDl~s~~~ 712 (792)
-+.+..+|+ .++.+..+ .+++.|-++++.
T Consensus 304 ~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~ 337 (527)
T TIGR03075 304 ILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKL 337 (527)
T ss_pred EEEEeccCCcEEEEEEEeCCCceEEEEECCCCce
Confidence 122334666 66677777 899999988743
No 351
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=98.00 E-value=0.0019 Score=68.61 Aligned_cols=215 Identities=15% Similarity=0.145 Sum_probs=123.0
Q ss_pred CCCCeEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEE---------
Q 003840 564 PSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR--------- 634 (792)
Q Consensus 564 pdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~--------- 634 (792)
..++.|+.|+.+| |++|++.......... +...|..+...++-+.+++.+ |+.++++++.......
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvLs--d~~l~~~~L~~l~~~~~~~~~~~~~ 79 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVLS--DGQLYVYDLDSLEPVSTSAPLAFPK 79 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEEc--CCccEEEEchhhccccccccccccc
Confidence 3567899999999 9999994323333332 223399999998877666554 6999999987654333
Q ss_pred ------EeeCCeeEEEEe----cCCCEEEEEEcCCeEEEEECCCC-----eEEEEecCCCCCeEEEEEcCCCCEEEEEeC
Q 003840 635 ------VFKGGTAQMRFQ----PHLGRYLAAAAENVVSILDAETQ-----ACRLSLQGHTKPIDSVCWDPSGELLASVSE 699 (792)
Q Consensus 635 ------~~~~~~~~v~~s----p~~~~lla~s~dg~I~i~D~~t~-----~~~~~l~~h~~~V~sv~~spdg~~Las~s~ 699 (792)
.+.....+..|. ..+...+++.....|.+|..... +....+. -...+.+++|. ++.|+.+..
T Consensus 80 ~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~i~v~~~ 156 (275)
T PF00780_consen 80 SRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNKICVGTS 156 (275)
T ss_pred cccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCEEEEEeC
Confidence 111111222232 44556667777778888877653 3444444 44778899998 677888888
Q ss_pred CeEEEEECCCCCCcceEEEeecCC---------CceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEE
Q 003840 700 DSVRVWTVGSGSEGECVHELSCNG---------NKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAA 769 (792)
Q Consensus 700 d~I~IwDl~s~~~~~~i~~~~~~~---------~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~~~~h~~~V~s 769 (792)
+...+.|+.++.. ..+....... .....+.--+++.+|++. +..-.+.|....... ....-...+.+
T Consensus 157 ~~f~~idl~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll~~--~~~g~fv~~~G~~~r~~~i~W~~~p~~ 233 (275)
T PF00780_consen 157 KGFYLIDLNTGSP-SELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFLLCY--DNIGVFVNKNGEPSRKSTIQWSSAPQS 233 (275)
T ss_pred CceEEEecCCCCc-eEEeCccCCcchhhhcccCCCceEEEEeCCceEEEEe--cceEEEEcCCCCcCcccEEEcCCchhE
Confidence 8889999986543 2222111111 112222223345555543 333333344332222 11122334556
Q ss_pred EEEeCCCCEEEEEeCCCcEEEeC
Q 003840 770 LAVSTETGYVASASHDKFVKLWK 792 (792)
Q Consensus 770 l~fspdg~~LaSgs~DG~I~IWd 792 (792)
+++. ..||+..+. +.|.||+
T Consensus 234 ~~~~--~pyli~~~~-~~iEV~~ 253 (275)
T PF00780_consen 234 VAYS--SPYLIAFSS-NSIEVRS 253 (275)
T ss_pred EEEE--CCEEEEECC-CEEEEEE
Confidence 6663 447776655 4588874
No 352
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.97 E-value=0.0022 Score=71.65 Aligned_cols=205 Identities=14% Similarity=0.108 Sum_probs=120.5
Q ss_pred ceeeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEe--cc------CCCCEEEEEECC-----CC-
Q 003840 501 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNL--EE------HSSLITDVRFSP-----SM- 566 (792)
Q Consensus 501 ~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l--~~------h~~~V~~i~fsp-----dg- 566 (792)
.|.....+....++|++++.|.-| ++|.|..+|.+.|.|+.....+..- .. ....|+++.|.- |+
T Consensus 75 gf~P~~l~~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~y 153 (395)
T PF08596_consen 75 GFLPLTLLDAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGY 153 (395)
T ss_dssp EEEEEEEE---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSS
T ss_pred ccCchhheeccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcc
Confidence 367777788889999999998666 9999999999999999877766652 22 345688888863 33
Q ss_pred --CeEEEEeCCCcEEEEeCCC--CC-ce---eEEecccCCCeEEEEEc-CCC--------------------CeEEEEEe
Q 003840 567 --PRLATSSFDKTVRVWDADN--PG-YS---LRTFMGHSASVMSLDFH-PNK--------------------DDLICSCD 617 (792)
Q Consensus 567 --~~Lasgs~Dg~V~IWdl~s--~~-~~---i~~~~~h~~~V~sl~fs-pd~--------------------~~ll~sgs 617 (792)
-+|++|...|.+.+|.+.- .+ .. ......+.+.|..|... .+. +.+++++
T Consensus 154 SSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvv- 232 (395)
T PF08596_consen 154 SSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVV- 232 (395)
T ss_dssp EEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-
T ss_pred cceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEE-
Confidence 3789999999999998852 12 11 11222456677666632 221 1244344
Q ss_pred CCCcEEEEEcCCCeeEEEe-eCCeeE--EEEe-----cCCCEEEEEEcCCeEEEEECCCCeEEEEecCCC----CCeEEE
Q 003840 618 GDGEIRYWSINNGSCTRVF-KGGTAQ--MRFQ-----PHLGRYLAAAAENVVSILDAETQACRLSLQGHT----KPIDSV 685 (792)
Q Consensus 618 ~Dg~I~iwdl~~~~~~~~~-~~~~~~--v~~s-----p~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~----~~V~sv 685 (792)
.+..|+++...+.+..... +.+..+ +++. ..+..|++...+|.|++|.+-..+.+..+.-.. ..+...
T Consensus 233 Se~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~s 312 (395)
T PF08596_consen 233 SESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSS 312 (395)
T ss_dssp -SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-
T ss_pred cccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCcccccccccc
Confidence 3788999999887766543 332222 3342 244567778889999999999988887766432 234557
Q ss_pred EEcCCCCEEEEEeCCeEEEEEC
Q 003840 686 CWDPSGELLASVSEDSVRVWTV 707 (792)
Q Consensus 686 ~~spdg~~Las~s~d~I~IwDl 707 (792)
+++++|+.++-.+...+.+|.+
T Consensus 313 sis~~Gdi~~~~gpsE~~l~sv 334 (395)
T PF08596_consen 313 SISRNGDIFYWTGPSEIQLFSV 334 (395)
T ss_dssp EE-TTS-EEEE-SSSEEEEEEE
T ss_pred EECCCCCEEEEeCcccEEEEEE
Confidence 7889999888887775555444
No 353
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.95 E-value=0.0096 Score=67.21 Aligned_cols=189 Identities=14% Similarity=0.131 Sum_probs=100.8
Q ss_pred eEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCC-----ceeEEecccCCCeEEEEEcCCC
Q 003840 535 KAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG-----YSLRTFMGHSASVMSLDFHPNK 609 (792)
Q Consensus 535 ~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~-----~~i~~~~~h~~~V~sl~fspd~ 609 (792)
.|.||+.. |+.+..+.-..+.|.++.|+.+ ..|++...||.+++||+.... ..+....-....|..+.+..+|
T Consensus 62 ~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~-e~LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~G 139 (410)
T PF04841_consen 62 SIQIYSSS-GKLLSSIPWDSGRIVGMGWTDD-EELVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKNG 139 (410)
T ss_pred EEEEECCC-CCEeEEEEECCCCEEEEEECCC-CeEEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCCCC
Confidence 48888854 5666666555589999999885 466677799999999996311 0111111111222233333333
Q ss_pred CeEEEEEeCCCcEEEEEcCCCe-eEEEee---CCee----------EEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEe
Q 003840 610 DDLICSCDGDGEIRYWSINNGS-CTRVFK---GGTA----------QMRFQPHLGRYLAAAAENVVSILDAETQACRLSL 675 (792)
Q Consensus 610 ~~ll~sgs~Dg~I~iwdl~~~~-~~~~~~---~~~~----------~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l 675 (792)
++ .-..++.|.+.+-.... ..+.+. .... ...+..+....+....++.+.+.+....+. +
T Consensus 140 --iv-vLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i 213 (410)
T PF04841_consen 140 --IV-VLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---I 213 (410)
T ss_pred --EE-EECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---c
Confidence 22 22234444444322211 111110 0000 012334444444444555555444332211 1
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecC-CCceEEEEEeCCC
Q 003840 676 QGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCN-GNKFHSCVFHPTY 735 (792)
Q Consensus 676 ~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~-~~~i~si~fspdg 735 (792)
. ..+++..|++||+|++||....+ .+.|++..-. +.+.++... ......+.|.-+.
T Consensus 214 ~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~---~~~~e~~~~~~~~p~~~~WCG~d 271 (410)
T PF04841_consen 214 D-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFS---EKLCEFDTDSKSPPKQMAWCGND 271 (410)
T ss_pred c-CCCCeEEEEECCCCCEEEEEECCCCEEEEECccc---ceeEEeecCcCCCCcEEEEECCC
Confidence 1 24679999999999999998887 7777765432 344444433 3455667776654
No 354
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.94 E-value=0.0011 Score=72.37 Aligned_cols=207 Identities=14% Similarity=0.088 Sum_probs=115.1
Q ss_pred cEEEEeCCCCCceeEEecc-cCCCeEEEE---EcCC---CCeEEEEEeC----------CCcEEEEEcCCC-----eeEE
Q 003840 577 TVRVWDADNPGYSLRTFMG-HSASVMSLD---FHPN---KDDLICSCDG----------DGEIRYWSINNG-----SCTR 634 (792)
Q Consensus 577 ~V~IWdl~s~~~~i~~~~~-h~~~V~sl~---fspd---~~~ll~sgs~----------Dg~I~iwdl~~~-----~~~~ 634 (792)
.|+|.|..+ ...+..+.- ....+++++ |..+ ...+|+.|.. .|.|.++++... +...
T Consensus 3 ~i~l~d~~~-~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 3 SIRLVDPTT-FEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp EEEEEETTT-SSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred EEEEEeCCC-CeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 477777765 334433331 223344443 3322 1456666543 288999999984 2222
Q ss_pred ----EeeCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCe-EEEEec-CCCCCeEEEEEcCCCCEEEEEeCC-eEEEEEC
Q 003840 635 ----VFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQA-CRLSLQ-GHTKPIDSVCWDPSGELLASVSED-SVRVWTV 707 (792)
Q Consensus 635 ----~~~~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~-~~~~l~-~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl 707 (792)
.+++.+.+++.. +++ ++++.++.|.+|++...+ ....-. .....+.++... +++|++|... .|.++.+
T Consensus 82 i~~~~~~g~V~ai~~~--~~~-lv~~~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~ 156 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF--NGR-LVVAVGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRY 156 (321)
T ss_dssp EEEEEESS-EEEEEEE--TTE-EEEEETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEE
T ss_pred EEEEeecCcceEhhhh--CCE-EEEeecCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEE
Confidence 234555555544 566 555556899999998776 433322 123356666654 5688888765 6666644
Q ss_pred CCCCC-cceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC-------C--cEE--EEcccCCCeEEE---EE
Q 003840 708 GSGSE-GECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSE-------N--KTM--TLTAHEGLIAAL---AV 772 (792)
Q Consensus 708 ~s~~~-~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~-------~--~~~--~~~~h~~~V~sl---~f 772 (792)
..... ...+. -......++++.|-.+++.++++..+|.|.++.... + +.. ........|+++ ++
T Consensus 157 ~~~~~~l~~va-~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l 235 (321)
T PF03178_consen 157 DEENNKLILVA-RDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSL 235 (321)
T ss_dssp ETTTE-EEEEE-EESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--S
T ss_pred EccCCEEEEEE-ecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEe
Confidence 43211 12222 223345688888886767999999999999998763 2 222 223345667777 44
Q ss_pred eC--CCC------EEEEEeCCCcEEE
Q 003840 773 ST--ETG------YVASASHDKFVKL 790 (792)
Q Consensus 773 sp--dg~------~LaSgs~DG~I~I 790 (792)
.+ .+. .++.++.+|.|.+
T Consensus 236 ~~~~~~~~~~~~~~i~~~T~~G~Ig~ 261 (321)
T PF03178_consen 236 IPRSGSSESPNRPQILYGTVDGSIGV 261 (321)
T ss_dssp S--SSSS-TTEEEEEEEEETTS-EEE
T ss_pred eecCCCCcccccceEEEEecCCEEEE
Confidence 44 122 4777888998863
No 355
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.91 E-value=0.00012 Score=82.22 Aligned_cols=81 Identities=20% Similarity=0.270 Sum_probs=67.4
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCce
Q 003840 510 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYS 589 (792)
Q Consensus 510 ~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~ 589 (792)
.....|.|++++|+.+.|+.|+.||+|++||...+... +....-..+.++|+|+|.+|++|+..|.+.+||+.-....
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALspi~ 334 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSPIK 334 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCccc
Confidence 56788999999999999999999999999998766333 3345566899999999999999999999999999753333
Q ss_pred eEE
Q 003840 590 LRT 592 (792)
Q Consensus 590 i~~ 592 (792)
+..
T Consensus 335 ~qL 337 (545)
T PF11768_consen 335 MQL 337 (545)
T ss_pred eee
Confidence 333
No 356
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=97.86 E-value=0.041 Score=57.14 Aligned_cols=270 Identities=11% Similarity=0.027 Sum_probs=147.0
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCC--CCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcee
Q 003840 513 SKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHS--SLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSL 590 (792)
Q Consensus 513 ~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~--~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i 590 (792)
+-+..+.|+.+ ++..+..+.-++|+|+.+......+..-. +.-.+ |.-.|++.+++..|.-+.++|+.++..+.
T Consensus 87 ~l~~Dv~vse~--yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyayg--v~vsGn~aYVadlddgfLivdvsdpssP~ 162 (370)
T COG5276 87 DLFADVRVSEE--YVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYG--VYVSGNYAYVADLDDGFLIVDVSDPSSPQ 162 (370)
T ss_pred hhhheeEeccc--EEEEEcCCCceEEEeccCCCCcceeccccCCceEEE--EEecCCEEEEeeccCcEEEEECCCCCCce
Confidence 44566677655 77788888889999998765444333211 22333 34468899999877778899998766544
Q ss_pred E--EecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCe---eEEEeeCCeeEEEEecCCCEEEEEEcCCeEEEEE
Q 003840 591 R--TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS---CTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILD 665 (792)
Q Consensus 591 ~--~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~---~~~~~~~~~~~v~~sp~~~~lla~s~dg~I~i~D 665 (792)
. .+.........++++- + ..+.+..|+-+.+.|+.... .+..+......-..++.+++.++...+..+.+.|
T Consensus 163 lagrya~~~~d~~~v~ISG--n-~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~egvlivd 239 (370)
T COG5276 163 LAGRYALPGGDTHDVAISG--N-YAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYDEGVLIVD 239 (370)
T ss_pred eeeeeccCCCCceeEEEec--C-eEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEcccceEEEe
Confidence 3 3333344446777763 3 44466679999999997653 3333333323333444445666666666777888
Q ss_pred CCCCeEEEEecC-CCCCeEEE-EEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEE
Q 003840 666 AETQACRLSLQG-HTKPIDSV-CWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIG 742 (792)
Q Consensus 666 ~~t~~~~~~l~~-h~~~V~sv-~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs 742 (792)
..+.+....+.. ....+.++ .|.-.+++......+ .+-+.|+...........+...+..-..+... +.++..+.
T Consensus 240 ~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~spfl~ss~~t~g~~a~gi~ay--~~y~yiad 317 (370)
T COG5276 240 VSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNPPSPFLSSSLDTAGYQAAGIRAY--GNYNYIAD 317 (370)
T ss_pred cCCCCCceEeeccccCCcccccceecccceeeeeccccCceeEeccCCCCCchhccccCCCccccceEEe--cCeeEecc
Confidence 777653333321 11222222 233345555555555 66677776543333333333222222333222 22233332
Q ss_pred cCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003840 743 CYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 792 (792)
Q Consensus 743 ~dg~I~IwDl~~~~~~-~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd 792 (792)
.+ ...+.|....+-. ...+....+.+.+.+-+.+++.+...++.+.||+
T Consensus 318 kn-~g~vV~~s~~s~m~~~~g~~ti~~s~~v~~~~q~~y~~d~~~gl~i~~ 367 (370)
T COG5276 318 KN-TGAVVDASPPSMMDKRPGRPTIGQSCDVSVDTQIIYSTDYNGGLSIIE 367 (370)
T ss_pred CC-ceEEEeCCChhhcccccCcceEeeecceEEEeeEEEEeecCCCEEEEE
Confidence 22 3334444333222 1122222334444455566888888899999986
No 357
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.85 E-value=0.0067 Score=66.19 Aligned_cols=212 Identities=12% Similarity=0.141 Sum_probs=123.5
Q ss_pred CeEEEEECCCCceeEEecc-CCCCEEE---EEECCC----CCeEEEEeC----------CCcEEEEeCCCC---CceeEE
Q 003840 534 KKAVLWHTDTLKSKTNLEE-HSSLITD---VRFSPS----MPRLATSSF----------DKTVRVWDADNP---GYSLRT 592 (792)
Q Consensus 534 g~I~vWdl~t~~~~~~l~~-h~~~V~~---i~fspd----g~~Lasgs~----------Dg~V~IWdl~s~---~~~i~~ 592 (792)
..|+|.|..+.+.+..+.- ....|++ +.|..+ ..+|++|.. .|.|.+|++.+. ...+..
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 3688888888887766552 2233443 444433 457777743 288999999873 122222
Q ss_pred --ecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCe-eEEE--eeCCeeEEEEecCCCEEEEEEcCCeEEEE--E
Q 003840 593 --FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS-CTRV--FKGGTAQMRFQPHLGRYLAAAAENVVSIL--D 665 (792)
Q Consensus 593 --~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~-~~~~--~~~~~~~v~~sp~~~~lla~s~dg~I~i~--D 665 (792)
-....+.|++|+-. +++++++. ++.|++|++...+ .... +......+.....+++++++.....|.++ +
T Consensus 82 i~~~~~~g~V~ai~~~--~~~lv~~~--g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~ 157 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF--NGRLVVAV--GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYD 157 (321)
T ss_dssp EEEEEESS-EEEEEEE--TTEEEEEE--TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEE
T ss_pred EEEEeecCcceEhhhh--CCEEEEee--cCEEEEEEccCcccchhhheecceEEEEEEeccccEEEEEEcccCEEEEEEE
Confidence 23467889999877 34455443 6899999998887 4443 33445556666667899999988777766 5
Q ss_pred CCCCeEEEE-ecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCC-----C---CcceEEEeecCCCceEEE---EEe
Q 003840 666 AETQACRLS-LQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSG-----S---EGECVHELSCNGNKFHSC---VFH 732 (792)
Q Consensus 666 ~~t~~~~~~-l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~-----~---~~~~i~~~~~~~~~i~si---~fs 732 (792)
.+..+.... -.....++++++|-.+++.++++..+ .|.++..... . ....+..+. .+..|+++ .+.
T Consensus 158 ~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~-lg~~v~~~~~~~l~ 236 (321)
T PF03178_consen 158 EENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFH-LGDIVNSFRRGSLI 236 (321)
T ss_dssp TTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE--SS-EEEEEE--SS
T ss_pred ccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEE-CCCccceEEEEEee
Confidence 433322222 12245668899998666777777777 8888877531 1 111222332 23456666 444
Q ss_pred C--CCC------EEEEEEcCCeEEEE
Q 003840 733 P--TYP------SLLVIGCYQSLELW 750 (792)
Q Consensus 733 p--dg~------~L~sgs~dg~I~Iw 750 (792)
| .+. .++.++.+|.|.+.
T Consensus 237 ~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 237 PRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp --SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred ecCCCCcccccceEEEEecCCEEEEE
Confidence 4 222 48888888888743
No 358
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.83 E-value=5.2e-06 Score=92.63 Aligned_cols=196 Identities=18% Similarity=0.238 Sum_probs=133.2
Q ss_pred CCEEEEEECCCC--CeEEEEeCCCcEEEEeCCCCCce-eEEecccCCCeEEEEEcCCCCeEEEEEe----CCCcEEEEEc
Q 003840 555 SLITDVRFSPSM--PRLATSSFDKTVRVWDADNPGYS-LRTFMGHSASVMSLDFHPNKDDLICSCD----GDGEIRYWSI 627 (792)
Q Consensus 555 ~~V~~i~fspdg--~~Lasgs~Dg~V~IWdl~s~~~~-i~~~~~h~~~V~sl~fspd~~~ll~sgs----~Dg~I~iwdl 627 (792)
..+.|+++.-+. ..+++|..+|.|.+-.++.+... .....++...+++++|++-+...+|+|- .|..+.|||+
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi 136 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI 136 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence 446677666543 47889999999999988764433 4555678889999999987767776663 3678999999
Q ss_pred CCCe--eEE--Ee----eCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCe-EEEEecCCCCCeEEEEEcC-CCCEEEEE
Q 003840 628 NNGS--CTR--VF----KGGTAQMRFQPHLGRYLAAAAENVVSILDAETQA-CRLSLQGHTKPIDSVCWDP-SGELLASV 697 (792)
Q Consensus 628 ~~~~--~~~--~~----~~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~-~~~~l~~h~~~V~sv~~sp-dg~~Las~ 697 (792)
.++- ... .| ..+...++|..+.+.+++|.....+.++|++-.. ....+ .+..|..+.++| .+.|+++.
T Consensus 137 ~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vqG~tVdp~~~nY~cs~ 214 (783)
T KOG1008|consen 137 NSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQGITVDPFSPNYFCSN 214 (783)
T ss_pred ccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh--hhhhcccceecCCCCCceecc
Confidence 8872 111 12 2345678888887888888888999999998432 11111 234567788888 88899998
Q ss_pred eCCeEEEEEC-CCCCCcceEEEeecCC----CceEEEEEeCCCC-EEEEEEcC-CeEEEEECCC
Q 003840 698 SEDSVRVWTV-GSGSEGECVHELSCNG----NKFHSCVFHPTYP-SLLVIGCY-QSLELWNMSE 754 (792)
Q Consensus 698 s~d~I~IwDl-~s~~~~~~i~~~~~~~----~~i~si~fspdg~-~L~sgs~d-g~I~IwDl~~ 754 (792)
.++.|.+||. +..+ ..+..+.... ..+..++|+|... .+++...| ++|++||+..
T Consensus 215 ~dg~iAiwD~~rnie--npl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 215 SDGDIAIWDTYRNIE--NPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred ccCceeeccchhhhc--cHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 8779999994 3221 2222222222 2488999999653 34444444 6899998853
No 359
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.81 E-value=0.011 Score=67.01 Aligned_cols=217 Identities=13% Similarity=0.100 Sum_probs=121.5
Q ss_pred EEEEEECCCCCeEEEE-eCCC----cEEEEeCCCCCceeE-EecccCCCeEEEEEcCCCCeEEEEEeCCC----------
Q 003840 557 ITDVRFSPSMPRLATS-SFDK----TVRVWDADNPGYSLR-TFMGHSASVMSLDFHPNKDDLICSCDGDG---------- 620 (792)
Q Consensus 557 V~~i~fspdg~~Lasg-s~Dg----~V~IWdl~s~~~~i~-~~~~h~~~V~sl~fspd~~~ll~sgs~Dg---------- 620 (792)
+..+.++|++++||.+ +..| .|+|+|++++ ..+. .+... ....+.|.+++..++++...+.
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg-~~l~d~i~~~--~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~ 202 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETG-KFLPDGIENP--KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPR 202 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTT-EEEEEEEEEE--ESEEEEECTTSSEEEEEECSTTTSS-CCGCCE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCC-cCcCCccccc--ccceEEEeCCCCEEEEEEeCcccccccCCCCc
Confidence 4467899999988766 4444 4999999984 4333 22222 1224999999888887775442
Q ss_pred cEEEEEcCCCeeE--EEeeC--C---eeEEEEecCCCEEEEEEc---C-CeEEEEECCCC-----eEEEEecCCCCCeEE
Q 003840 621 EIRYWSINNGSCT--RVFKG--G---TAQMRFQPHLGRYLAAAA---E-NVVSILDAETQ-----ACRLSLQGHTKPIDS 684 (792)
Q Consensus 621 ~I~iwdl~~~~~~--~~~~~--~---~~~v~~sp~~~~lla~s~---d-g~I~i~D~~t~-----~~~~~l~~h~~~V~s 684 (792)
.|++|.+.+.... ..|.. . ...+..+.++.++++... + ..|++.|+... ..........+....
T Consensus 203 ~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~ 282 (414)
T PF02897_consen 203 QVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYY 282 (414)
T ss_dssp EEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEE
T ss_pred EEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEE
Confidence 3788888776432 33322 2 346778999998876554 3 46888898874 333333323333333
Q ss_pred EEEcCCCCEEEEEeCC----eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcC-C--eEEEEECC-CCc
Q 003840 685 VCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY-Q--SLELWNMS-ENK 756 (792)
Q Consensus 685 v~~spdg~~Las~s~d----~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~d-g--~I~IwDl~-~~~ 756 (792)
+... .+.+++....+ .|...++...........+..+...+.-..+...+.+|++...+ + .|++|++. +..
T Consensus 283 v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~ 361 (414)
T PF02897_consen 283 VDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKE 361 (414)
T ss_dssp EEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TEE
T ss_pred EEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCcE
Confidence 4443 44444444343 56667777654322333444455443333444455566655544 3 79999999 554
Q ss_pred EEEEcc-cCCCeEEEEEeCCCC
Q 003840 757 TMTLTA-HEGLIAALAVSTETG 777 (792)
Q Consensus 757 ~~~~~~-h~~~V~sl~fspdg~ 777 (792)
...+.. -.+.|..+...+++.
T Consensus 362 ~~~~~~p~~g~v~~~~~~~~~~ 383 (414)
T PF02897_consen 362 SREIPLPEAGSVSGVSGDFDSD 383 (414)
T ss_dssp EEEEESSSSSEEEEEES-TT-S
T ss_pred EeeecCCcceEEeccCCCCCCC
Confidence 443332 334455555555544
No 360
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.81 E-value=0.0068 Score=65.32 Aligned_cols=216 Identities=11% Similarity=0.109 Sum_probs=128.2
Q ss_pred EEECCCCCe-EEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee-
Q 003840 560 VRFSPSMPR-LATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK- 637 (792)
Q Consensus 560 i~fspdg~~-Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~- 637 (792)
..|.++... +++--..+.|.-|+..++.. ..+. +...+.++.....+..++ ++ +..+++++.+.+..+..+.
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~--~~~~-~p~~~~~~~~~d~~g~Lv-~~--~~g~~~~~~~~~~~~t~~~~ 103 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGKK--RVFP-SPGGFSSGALIDAGGRLI-AC--EHGVRLLDPDTGGKITLLAE 103 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCce--EEEE-CCCCcccceeecCCCeEE-EE--ccccEEEeccCCceeEEecc
Confidence 356666664 44445567788888875333 2222 233344555444444444 44 4456777776665533321
Q ss_pred -------CCeeEEEEecCCCEEEEEEc-----------CCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeC
Q 003840 638 -------GGTAQMRFQPHLGRYLAAAA-----------ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSE 699 (792)
Q Consensus 638 -------~~~~~v~~sp~~~~lla~s~-----------dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~ 699 (792)
...+...+.|++...+.... -|.|+.+|. .+..+..+..+-..-+.|+|+||++.|+.+..
T Consensus 104 ~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT 182 (307)
T COG3386 104 PEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADT 182 (307)
T ss_pred ccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeC
Confidence 23455777888666554333 134555555 45555555555556678999999988777766
Q ss_pred C--eEEEEECCC--CCCc--ceEEEeecCCCceEEEEEeCCCCEEEEEEcCC-eEEEEECCCCcEE-EEcccCCCeEEEE
Q 003840 700 D--SVRVWTVGS--GSEG--ECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ-SLELWNMSENKTM-TLTAHEGLIAALA 771 (792)
Q Consensus 700 d--~I~IwDl~s--~~~~--~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg-~I~IwDl~~~~~~-~~~~h~~~V~sl~ 771 (792)
. .|..|++.. +... .....+....+..-.++...+|.+.+++...| .|.+|+.. ++++ .+.-....+++++
T Consensus 183 ~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~ 261 (307)
T COG3386 183 PANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPA 261 (307)
T ss_pred CCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccce
Confidence 4 777777652 2111 11222333456677788888998776555554 99999999 6666 4444447788888
Q ss_pred Ee-CCCCEEEEEe
Q 003840 772 VS-TETGYVASAS 783 (792)
Q Consensus 772 fs-pdg~~LaSgs 783 (792)
|- ++.+.|+..+
T Consensus 262 FgG~~~~~L~iTs 274 (307)
T COG3386 262 FGGPDLNTLYITS 274 (307)
T ss_pred EeCCCcCEEEEEe
Confidence 85 4455544433
No 361
>PRK10115 protease 2; Provisional
Probab=97.80 E-value=0.029 Score=67.56 Aligned_cols=237 Identities=8% Similarity=0.004 Sum_probs=122.8
Q ss_pred CeEEEEEcCCCCEEEEEeC-----CCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCC------CcEEEEe
Q 003840 514 KVICCHFSSDGKLLATGGH-----DKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD------KTVRVWD 582 (792)
Q Consensus 514 ~V~~lafspdg~~Lasgs~-----Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~D------g~V~IWd 582 (792)
.+..+.|+|||++||.+.. ...|++.|+.+++.+........ ..++|.+|++.|+.+..+ ..|++|+
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~ 205 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHT 205 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence 3667889999999887643 23588999988864333222222 459999998866665432 3588888
Q ss_pred CCCCC-ceeEEecccCCCeE-EEEEcCCCCeEEEEEeC--CCcEEEEEcC--CCeeEEEe--eCCeeEEEEecCCCEEEE
Q 003840 583 ADNPG-YSLRTFMGHSASVM-SLDFHPNKDDLICSCDG--DGEIRYWSIN--NGSCTRVF--KGGTAQMRFQPHLGRYLA 654 (792)
Q Consensus 583 l~s~~-~~i~~~~~h~~~V~-sl~fspd~~~ll~sgs~--Dg~I~iwdl~--~~~~~~~~--~~~~~~v~~sp~~~~lla 654 (792)
+.++. .....+........ .+..+.++..+++.+.. ++.+.+|+.. .+.....+ ..... ..+...++.+++
T Consensus 206 lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ly~ 284 (686)
T PRK10115 206 IGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHE-YSLDHYQHRFYL 284 (686)
T ss_pred CCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCE-EEEEeCCCEEEE
Confidence 88742 22333333333333 33334477766654433 4678999853 33322222 12221 222233345554
Q ss_pred EEcC----CeEEEEECCCCeEEEEecCC-C-CCeEEEEEcCCCCEEEEEeCC---eEEEEECCCCCCcceEEEee-cCCC
Q 003840 655 AAAE----NVVSILDAETQACRLSLQGH-T-KPIDSVCWDPSGELLASVSED---SVRVWTVGSGSEGECVHELS-CNGN 724 (792)
Q Consensus 655 ~s~d----g~I~i~D~~t~~~~~~l~~h-~-~~V~sv~~spdg~~Las~s~d---~I~IwDl~s~~~~~~i~~~~-~~~~ 724 (792)
.+.. ..|...++........+..+ . ..|..+.+.. +.++++...+ .+++++...+ .+..+. ....
T Consensus 285 ~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~-~~l~~~~~~~g~~~l~~~~~~~~----~~~~l~~~~~~ 359 (686)
T PRK10115 285 RSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFT-DWLVVEERQRGLTSLRQINRKTR----EVIGIAFDDPA 359 (686)
T ss_pred EEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEEC-CEEEEEEEeCCEEEEEEEcCCCC----ceEEecCCCCc
Confidence 4442 24544555421111223333 3 3677788873 3344444444 5666665432 222322 1122
Q ss_pred ceEEEEEe--CCCC-EEEEEEcC---CeEEEEECCCCcEE
Q 003840 725 KFHSCVFH--PTYP-SLLVIGCY---QSLELWNMSENKTM 758 (792)
Q Consensus 725 ~i~si~fs--pdg~-~L~sgs~d---g~I~IwDl~~~~~~ 758 (792)
.+..+.++ +++. .+++.++. +.|+.||+.+++..
T Consensus 360 ~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~~~ 399 (686)
T PRK10115 360 YVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGERR 399 (686)
T ss_pred eEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCcEE
Confidence 23333344 4444 34333332 58999999877644
No 362
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.78 E-value=0.0042 Score=74.07 Aligned_cols=213 Identities=9% Similarity=0.108 Sum_probs=128.3
Q ss_pred CeEEEE-eCCCcEEEEeCCCCCceeEEecccCCC-eEEEEEcC-----CCCeEEEEEeCCCcEEEEEcCCCe--eEE---
Q 003840 567 PRLATS-SFDKTVRVWDADNPGYSLRTFMGHSAS-VMSLDFHP-----NKDDLICSCDGDGEIRYWSINNGS--CTR--- 634 (792)
Q Consensus 567 ~~Lasg-s~Dg~V~IWdl~s~~~~i~~~~~h~~~-V~sl~fsp-----d~~~ll~sgs~Dg~I~iwdl~~~~--~~~--- 634 (792)
++|+.. .....|+-.|++. ++.+..+..+... |..++-.. +....| .|-.+..|+.||.+-.. ++.
T Consensus 494 ~mil~~~~~~~~ly~mDLe~-GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tf-lGls~n~lfriDpR~~~~k~v~~~~ 571 (794)
T PF08553_consen 494 NMILLDPNNPNKLYKMDLER-GKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTF-LGLSDNSLFRIDPRLSGNKLVDSQS 571 (794)
T ss_pred ceEeecCCCCCceEEEecCC-CcEEEEeecCCCcceeEecccccccccCCCceE-EEECCCceEEeccCCCCCceeeccc
Confidence 344443 3457799999998 7888888877654 55554321 112223 67779999999998643 331
Q ss_pred -EeeC-CeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECC--CC
Q 003840 635 -VFKG-GTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVG--SG 710 (792)
Q Consensus 635 -~~~~-~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d~I~IwDl~--s~ 710 (792)
.+.. ....+......++|++|+.+|.|++||-...+....+.+-..+|..|+.+.||++|++.+...|.+++.. .+
T Consensus 572 k~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi~t~~~~g 651 (794)
T PF08553_consen 572 KQYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKTYLLLIDTLIKDG 651 (794)
T ss_pred cccccCCCceEEEecCCceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecceEEEEEEeeecC
Confidence 1211 1222334455689999999999999995443444455567889999999999999999888888888753 11
Q ss_pred C---------------C--cceEEEee----------cCCCceEEEEEeC---CCCEEEEEEcCCeEEEEECCC---C--
Q 003840 711 S---------------E--GECVHELS----------CNGNKFHSCVFHP---TYPSLLVIGCYQSLELWNMSE---N-- 755 (792)
Q Consensus 711 ~---------------~--~~~i~~~~----------~~~~~i~si~fsp---dg~~L~sgs~dg~I~IwDl~~---~-- 755 (792)
+ . ++.+..-. +....++...|+- .....++++....+.+|+++. +
T Consensus 652 ~~~g~~GF~~~~~~~~kp~Pr~L~L~pe~~~~~~~~~~~~~~Ft~a~Fnt~~~~~E~~IvtstG~f~v~Wnf~kV~~g~~ 731 (794)
T PF08553_consen 652 KNSGKLGFEKSFGKDKKPQPRRLQLKPEHVAYMQHETGKPISFTPAKFNTGIGKQETSIVTSTGPFVVTWNFKKVKRGKK 731 (794)
T ss_pred CccCccccccccCccCCCCCeEEecCHHHHHHHHhccCCCceeeceEEecCCCCccceEEEeccCEEEEEEHHHHhCCCC
Confidence 0 0 01111000 1112234445542 123455556667999999853 2
Q ss_pred cEEEEcccCCCeEEEE--EeCCCCEEEE
Q 003840 756 KTMTLTAHEGLIAALA--VSTETGYVAS 781 (792)
Q Consensus 756 ~~~~~~~h~~~V~sl~--fspdg~~LaS 781 (792)
.+..+......|.+-. |..|.++|++
T Consensus 732 ~~Y~ikry~~~V~~dnF~fg~d~~viva 759 (794)
T PF08553_consen 732 DPYQIKRYDENVVADNFKFGSDKNVIVA 759 (794)
T ss_pred CceEEEEcCCceEEccceeCCCCcEEEE
Confidence 3344544555565543 4445555544
No 363
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.76 E-value=0.0086 Score=67.59 Aligned_cols=188 Identities=8% Similarity=0.090 Sum_probs=98.4
Q ss_pred cEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee-----CCeeEE-E---Eec
Q 003840 577 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK-----GGTAQM-R---FQP 647 (792)
Q Consensus 577 ~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~-----~~~~~v-~---~sp 647 (792)
.|.||+.. +..+..+.-..+.|.++.|..+ ..|+ ....||.+++||+.... ...+. ..+... . +..
T Consensus 62 ~I~iys~s--G~ll~~i~w~~~~iv~~~wt~~-e~Lv-vV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~~ 136 (410)
T PF04841_consen 62 SIQIYSSS--GKLLSSIPWDSGRIVGMGWTDD-EELV-VVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWFY 136 (410)
T ss_pred EEEEECCC--CCEeEEEEECCCCEEEEEECCC-CeEE-EEEcCCEEEEEeCCCce-eechhhhccccCcccccccccccC
Confidence 37777776 3445444433378999999876 4455 55679999999986333 11111 111111 1 122
Q ss_pred CCCEEEEEEcCCeEEEEECCCCe-EEEEe---cCCCC------CeEE-EEEcCCCCEEEEEeCC-eEEEEECCCCCCcce
Q 003840 648 HLGRYLAAAAENVVSILDAETQA-CRLSL---QGHTK------PIDS-VCWDPSGELLASVSED-SVRVWTVGSGSEGEC 715 (792)
Q Consensus 648 ~~~~lla~s~dg~I~i~D~~t~~-~~~~l---~~h~~------~V~s-v~~spdg~~Las~s~d-~I~IwDl~s~~~~~~ 715 (792)
..+ +++...++.|++..-.... ....+ ..... .+.. ..++.+....+....+ .+.+.+-...
T Consensus 137 ~~G-ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~----- 210 (410)
T PF04841_consen 137 KNG-IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSF----- 210 (410)
T ss_pred CCC-EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccc-----
Confidence 223 4444455555544332221 11111 11000 0000 2233444444444444 5553333211
Q ss_pred EEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEc--ccCCCeEEEEEeCCCC
Q 003840 716 VHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLT--AHEGLIAALAVSTETG 777 (792)
Q Consensus 716 i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~~~~--~h~~~V~sl~fspdg~ 777 (792)
..+ ...+++..+++||++++|+....+|.+.|++.+-.+.+... .-......+.|.-+..
T Consensus 211 -~~i-~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~da 272 (410)
T PF04841_consen 211 -KQI-DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDA 272 (410)
T ss_pred -ccc-cCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCc
Confidence 011 12468999999999999999999999999877655554222 2234556677765543
No 364
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.75 E-value=0.026 Score=65.75 Aligned_cols=145 Identities=12% Similarity=0.069 Sum_probs=84.9
Q ss_pred CEEEEEeCCCeEEEEECCCCceeEEeccCCCC-EEEEEECC---CCCeEEEEe------CCCcEEEEeCCCCCceeEEec
Q 003840 525 KLLATGGHDKKAVLWHTDTLKSKTNLEEHSSL-ITDVRFSP---SMPRLATSS------FDKTVRVWDADNPGYSLRTFM 594 (792)
Q Consensus 525 ~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~-V~~i~fsp---dg~~Lasgs------~Dg~V~IWdl~s~~~~i~~~~ 594 (792)
..|++++.|+.|..+|.++|+.+-........ -..+.-+| ++ .|+++. .+|.|+.+|+++ ++.+-.+.
T Consensus 121 ~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~T-G~~lW~~~ 198 (527)
T TIGR03075 121 GKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKT-GKLVWRRY 198 (527)
T ss_pred CEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCC-CceeEecc
Confidence 36777888999999999999988765431100 00111122 34 455543 268899999987 44333222
Q ss_pred cc-------------------------------CCCeE-EEEEcCCCCeEEEEEe-C----CC-----------cEEEEE
Q 003840 595 GH-------------------------------SASVM-SLDFHPNKDDLICSCD-G----DG-----------EIRYWS 626 (792)
Q Consensus 595 ~h-------------------------------~~~V~-sl~fspd~~~ll~sgs-~----Dg-----------~I~iwd 626 (792)
.- ...+. .+.+.+..+.++ .+. . ++ .|.-.|
T Consensus 199 ~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy-~~tGnp~p~~~~~r~gdnl~~~s~vAld 277 (527)
T TIGR03075 199 TVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIY-FGTGNPSPWNSHLRPGDNLYTSSIVARD 277 (527)
T ss_pred CcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEE-EeCCCCCCCCCCCCCCCCccceeEEEEc
Confidence 11 01111 235555544333 333 2 12 678889
Q ss_pred cCCCeeEEEeeCC----------eeE--EEEecCCC---EEEEEEcCCeEEEEECCCCeEE
Q 003840 627 INNGSCTRVFKGG----------TAQ--MRFQPHLG---RYLAAAAENVVSILDAETQACR 672 (792)
Q Consensus 627 l~~~~~~~~~~~~----------~~~--v~~sp~~~---~lla~s~dg~I~i~D~~t~~~~ 672 (792)
+++|+....|... ... +.+..+++ .++.+..+|.++++|.++++.+
T Consensus 278 ~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 278 PDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred cccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 9999988766421 111 22324554 4567778999999999999886
No 365
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.74 E-value=0.0053 Score=67.04 Aligned_cols=240 Identities=13% Similarity=0.125 Sum_probs=118.7
Q ss_pred ECCCCceeEEeccCCCCEEE-----EEECCCCCeEEEEe-CCCc--EEEEeCCCCCceeEEecccC-CCeEEEEEcCCCC
Q 003840 540 HTDTLKSKTNLEEHSSLITD-----VRFSPSMPRLATSS-FDKT--VRVWDADNPGYSLRTFMGHS-ASVMSLDFHPNKD 610 (792)
Q Consensus 540 dl~t~~~~~~l~~h~~~V~~-----i~fspdg~~Lasgs-~Dg~--V~IWdl~s~~~~i~~~~~h~-~~V~sl~fspd~~ 610 (792)
|..||..+..|..+...... =+|.+||+.|+.++ .||. +++.|+.+ ..+..++... .......++++++
T Consensus 16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t--~~i~QLTdg~g~~~~g~~~s~~~~ 93 (386)
T PF14583_consen 16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLAT--GEITQLTDGPGDNTFGGFLSPDDR 93 (386)
T ss_dssp -TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT---EEEE---SS-B-TTT-EE-TTSS
T ss_pred CCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEccc--CEEEECccCCCCCccceEEecCCC
Confidence 66777777777654433333 35677887665554 4655 55566665 4455555443 2233566778877
Q ss_pred eEEEEEeCCCcEEEEEcCCCeeEEEeeC--Cee-EEEEe-cCCCEEEEEEc-----------------------CCeEEE
Q 003840 611 DLICSCDGDGEIRYWSINNGSCTRVFKG--GTA-QMRFQ-PHLGRYLAAAA-----------------------ENVVSI 663 (792)
Q Consensus 611 ~ll~sgs~Dg~I~iwdl~~~~~~~~~~~--~~~-~v~~s-p~~~~lla~s~-----------------------dg~I~i 663 (792)
.+++.. .+..|+..|+++.+....+.. .-. ...|. ..+...+++.. ...|..
T Consensus 94 ~~~Yv~-~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~ 172 (386)
T PF14583_consen 94 ALYYVK-NGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFT 172 (386)
T ss_dssp EEEEEE-TTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEE
T ss_pred eEEEEE-CCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEE
Confidence 666544 456899999999876555542 222 23443 22233333332 124667
Q ss_pred EECCCCeEEEEecCCCCCeEEEEEcCC-CCEEEEEeCC---e--EEEEECCCCCC-cceEEEeecCCCceEEEEEeCCCC
Q 003840 664 LDAETQACRLSLQGHTKPIDSVCWDPS-GELLASVSED---S--VRVWTVGSGSE-GECVHELSCNGNKFHSCVFHPTYP 736 (792)
Q Consensus 664 ~D~~t~~~~~~l~~h~~~V~sv~~spd-g~~Las~s~d---~--I~IwDl~s~~~-~~~i~~~~~~~~~i~si~fspdg~ 736 (792)
.|+.+++....+. ...++..+-|+|. ..+|+.|-++ . -+||-+++... .++++.- .....+..=-|.+||.
T Consensus 173 idl~tG~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~-~~~e~~gHEfw~~DG~ 250 (386)
T PF14583_consen 173 IDLKTGERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRR-MEGESVGHEFWVPDGS 250 (386)
T ss_dssp EETTT--EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS----TTEEEEEEEE-TTSS
T ss_pred EECCCCceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecC-CCCcccccccccCCCC
Confidence 7888887655554 4567888999994 5577777765 3 37888765322 2222221 1233345557899998
Q ss_pred EEEEEEc-----CCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEeCC
Q 003840 737 SLLVIGC-----YQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHD 785 (792)
Q Consensus 737 ~L~sgs~-----dg~I~IwDl~~~~~~~~~~h~~~V~sl~fspdg~~LaSgs~D 785 (792)
.|+.-+. +..|.-+|+.+++...+.. ......+..++||+++|-=+.|
T Consensus 251 ~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~-~p~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 251 TIWYDSYTPGGQDFWIAGYDPDTGERRRLME-MPWCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp -EEEEEEETTT--EEEEEE-TTT--EEEEEE-E-SEEEEEE-TTSSEEEEEE--
T ss_pred EEEEEeecCCCCceEEEeeCCCCCCceEEEe-CCceeeeEEcCCCCEEEecCCC
Confidence 7776443 2367778888876553322 2234556667899888754444
No 366
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.70 E-value=0.005 Score=63.44 Aligned_cols=249 Identities=15% Similarity=0.135 Sum_probs=140.5
Q ss_pred EEEEcCCC-CEEEEEeCCCe-EEEEECCCCceeEEeccCCC--CEEEEEECCCCCeEEEEeCC-----CcEEEEeCCCCC
Q 003840 517 CCHFSSDG-KLLATGGHDKK-AVLWHTDTLKSKTNLEEHSS--LITDVRFSPSMPRLATSSFD-----KTVRVWDADNPG 587 (792)
Q Consensus 517 ~lafspdg-~~Lasgs~Dg~-I~vWdl~t~~~~~~l~~h~~--~V~~i~fspdg~~Lasgs~D-----g~V~IWdl~s~~ 587 (792)
.|+|+|.- .-++.+-.-|+ ..+||........++...++ .--.=.|++||.+|+..-.| |.|-|||.+..-
T Consensus 72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~f 151 (366)
T COG3490 72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGF 151 (366)
T ss_pred CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccccc
Confidence 46666643 34444444444 56788877766555432111 11123799999999877443 789999999766
Q ss_pred ceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEE-EcCCCeeEEEeeCCeeEEEEecCCCEEEEEEcCCeEEEEEC
Q 003840 588 YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYW-SINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDA 666 (792)
Q Consensus 588 ~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iw-dl~~~~~~~~~~~~~~~v~~sp~~~~lla~s~dg~I~i~D~ 666 (792)
..+-.+..|.-.-..+.|.+||..+++. +|-|... |....+ +-.-+..-.+.+.|.
T Consensus 152 qrvgE~~t~GiGpHev~lm~DGrtlvva---nGGIethpdfgR~~--------------------lNldsMePSlvlld~ 208 (366)
T COG3490 152 QRVGEFSTHGIGPHEVTLMADGRTLVVA---NGGIETHPDFGRTE--------------------LNLDSMEPSLVLLDA 208 (366)
T ss_pred ceecccccCCcCcceeEEecCCcEEEEe---CCceecccccCccc--------------------cchhhcCccEEEEec
Confidence 6777888888888899999999866644 4445544 221110 011122334455565
Q ss_pred CCCeEEEE--ec--CCCCCeEEEEEcCCCCEEEEEeC-----C-eEEEEECCCCCCcceEEE----eecCCCceEEEEEe
Q 003840 667 ETQACRLS--LQ--GHTKPIDSVCWDPSGELLASVSE-----D-SVRVWTVGSGSEGECVHE----LSCNGNKFHSCVFH 732 (792)
Q Consensus 667 ~t~~~~~~--l~--~h~~~V~sv~~spdg~~Las~s~-----d-~I~IwDl~s~~~~~~i~~----~~~~~~~i~si~fs 732 (792)
.++.++.+ +. .+.-.|..++..+||..++.|-. | --.|=-...++..+.+.. ...-.+.|-+++.+
T Consensus 209 atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n 288 (366)
T COG3490 209 ATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAAN 288 (366)
T ss_pred cccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeec
Confidence 56654432 22 23456888999999987776532 1 111111122222111110 11123457788888
Q ss_pred CCCCEEEEEEcCC-eEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEe
Q 003840 733 PTYPSLLVIGCYQ-SLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLW 791 (792)
Q Consensus 733 pdg~~L~sgs~dg-~I~IwDl~~~~~~~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~IW 791 (792)
.+..+++..+-.| ...+||..++.++....-.. +..++- ...-++..+.+|.|.++
T Consensus 289 ~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l~d-aaGva~--~~~gf~vssg~G~~~~~ 345 (366)
T COG3490 289 RRDGLVALTSPRGNRAVIWDAATGAVVSEAALPD-AAGVAA--AKGGFAVSSGQGRIIFY 345 (366)
T ss_pred ccCCeEEEecCCCCeEEEEEcCCCcEEecccccc-ccccee--ccCceEEecCCceEEec
Confidence 7777776666654 78899999999875433222 222332 22224444556666643
No 367
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.54 E-value=0.0037 Score=74.57 Aligned_cols=141 Identities=11% Similarity=0.107 Sum_probs=93.6
Q ss_pred CCCEEEEE-eCCCeEEEEECCCCceeEEeccCCCC-EEEEEECC-----CCCeEEEEeCCCcEEEEeCCCCCceeEEec-
Q 003840 523 DGKLLATG-GHDKKAVLWHTDTLKSKTNLEEHSSL-ITDVRFSP-----SMPRLATSSFDKTVRVWDADNPGYSLRTFM- 594 (792)
Q Consensus 523 dg~~Lasg-s~Dg~I~vWdl~t~~~~~~l~~h~~~-V~~i~fsp-----dg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~- 594 (792)
|.++|+.. .....|+-.|++.|+.+..+..|... |.+++-.. +..-.++|-.+..+..||.+-.+..+..-.
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~ 571 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQS 571 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccc
Confidence 33444443 35678999999999999999987754 55554321 133456777788899999986543222111
Q ss_pred ---ccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeE---EEeeCCeeEEEEecCCCEEEEEEcCCeEEEEEC
Q 003840 595 ---GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT---RVFKGGTAQMRFQPHLGRYLAAAAENVVSILDA 666 (792)
Q Consensus 595 ---~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~---~~~~~~~~~v~~sp~~~~lla~s~dg~I~i~D~ 666 (792)
.......|++-..+| .||+|+.+|.||+||--..+.. ..+..++..+..+.+|.+++++|. ..|.++|+
T Consensus 572 k~Y~~~~~Fs~~aTt~~G--~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~-tyLlLi~t 646 (794)
T PF08553_consen 572 KQYSSKNNFSCFATTEDG--YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCK-TYLLLIDT 646 (794)
T ss_pred cccccCCCceEEEecCCc--eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeec-ceEEEEEE
Confidence 234557788777665 5779999999999994322222 223457888999999888877665 44555543
No 368
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.52 E-value=0.01 Score=69.84 Aligned_cols=209 Identities=15% Similarity=0.154 Sum_probs=112.8
Q ss_pred CCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEe------CCC--cEEEEeCCCCCceeEEecccCCCeEEEE
Q 003840 533 DKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSS------FDK--TVRVWDADNPGYSLRTFMGHSASVMSLD 604 (792)
Q Consensus 533 Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs------~Dg--~V~IWdl~s~~~~i~~~~~h~~~V~sl~ 604 (792)
+|.+.-.+-.....+.-..+....+.+.+++|+|+.++... .|. .|.+++.. +.......+ ...+.-.
T Consensus 328 ~G~l~~~~~~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g--g~~~~lt~g--~~~t~Ps 403 (591)
T PRK13616 328 DGSLVSVDGQGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG--GVAVQVLEG--HSLTRPS 403 (591)
T ss_pred CCeEEEecCCCeeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC--CcceeeecC--CCCCCce
Confidence 55554443222222222223334678999999999877665 244 34444543 333222222 2378899
Q ss_pred EcCCCCeEEEEEe-----------CCCcEEEEEcCCCeeEEEeeCCeeEEEEecCCCEEEEEEcCCeEEE---EECCCCe
Q 003840 605 FHPNKDDLICSCD-----------GDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSI---LDAETQA 670 (792)
Q Consensus 605 fspd~~~ll~sgs-----------~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~lla~s~dg~I~i---~D~~t~~ 670 (792)
|+|++..+.+... ..+.+.+.+++.+.....+++.+..+.|+|++.++++.. ++.|++ .....+.
T Consensus 404 WspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~ 482 (591)
T PRK13616 404 WSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVASRVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQ 482 (591)
T ss_pred ECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhhccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCc
Confidence 9999775554432 223455556655544445567799999999999988876 477777 4444454
Q ss_pred EEE----EecC-CCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcC
Q 003840 671 CRL----SLQG-HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY 744 (792)
Q Consensus 671 ~~~----~l~~-h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~d 744 (792)
... .+.. -...+.++.|..++.+++. ..+ ...+|.+.-.........-......+..++-++. .|++...+
T Consensus 483 ~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~-~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~ 559 (591)
T PRK13616 483 YALTNPREVGPGLGDTAVSLDWRTGDSLVVG-RSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTDAR 559 (591)
T ss_pred eeecccEEeecccCCccccceEecCCEEEEE-ecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEcCC
Confidence 111 1222 2334688999999986644 444 3334443322111111011111344555655552 46666666
Q ss_pred CeEEE
Q 003840 745 QSLEL 749 (792)
Q Consensus 745 g~I~I 749 (792)
+.+.+
T Consensus 560 g~~~l 564 (591)
T PRK13616 560 AVLQL 564 (591)
T ss_pred ceEEe
Confidence 54433
No 369
>PRK10115 protease 2; Provisional
Probab=97.51 E-value=0.091 Score=63.34 Aligned_cols=198 Identities=10% Similarity=-0.003 Sum_probs=103.4
Q ss_pred CCEEEEEECCCCCeEEEEeC-C----CcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCC-----CcEEE
Q 003840 555 SLITDVRFSPSMPRLATSSF-D----KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD-----GEIRY 624 (792)
Q Consensus 555 ~~V~~i~fspdg~~Lasgs~-D----g~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~D-----g~I~i 624 (792)
-.+..+.|+||+++|+.+.. + -.|++.|+.++......+.+- . ..++|.+|++.++++...+ ..|++
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~-~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~ 203 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV-E--PSFVWANDSWTFYYVRKHPVTLLPYQVWR 203 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc-c--eEEEEeeCCCEEEEEEecCCCCCCCEEEE
Confidence 44677899999998877633 2 258888998633222222221 1 4699999998888776543 36888
Q ss_pred EEcCCC--eeEEEeeC--C-ee-EEEEecCCCEEEEEEc---CCeEEEEECC--CCeEEEEecCCCCCeEEEEEcCCCCE
Q 003840 625 WSINNG--SCTRVFKG--G-TA-QMRFQPHLGRYLAAAA---ENVVSILDAE--TQACRLSLQGHTKPIDSVCWDPSGEL 693 (792)
Q Consensus 625 wdl~~~--~~~~~~~~--~-~~-~v~~sp~~~~lla~s~---dg~I~i~D~~--t~~~~~~l~~h~~~V~sv~~spdg~~ 693 (792)
|++.++ +....+.. . .. .+..+.++.+++..+. ++.+.+|+.. ++.....+.........+. +..+.+
T Consensus 204 h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l 282 (686)
T PRK10115 204 HTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQHRF 282 (686)
T ss_pred EECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCCCEE
Confidence 899887 33344432 1 22 2223336676665544 4578888853 3332222221122222222 233333
Q ss_pred EEEEeCC--e--EEEEECCCCCCcceEEEeecC--CCceEEEEEeCCCCEEEEEEcCC--eEEEEECCCCcEEEE
Q 003840 694 LASVSED--S--VRVWTVGSGSEGECVHELSCN--GNKFHSCVFHPTYPSLLVIGCYQ--SLELWNMSENKTMTL 760 (792)
Q Consensus 694 Las~s~d--~--I~IwDl~s~~~~~~i~~~~~~--~~~i~si~fspdg~~L~sgs~dg--~I~IwDl~~~~~~~~ 760 (792)
++....+ . |...++..... ...+..+ ...+..+.+..+ ..+++...++ .|++++..++....+
T Consensus 283 y~~tn~~~~~~~l~~~~~~~~~~---~~~l~~~~~~~~i~~~~~~~~-~l~~~~~~~g~~~l~~~~~~~~~~~~l 353 (686)
T PRK10115 283 YLRSNRHGKNFGLYRTRVRDEQQ---WEELIPPRENIMLEGFTLFTD-WLVVEERQRGLTSLRQINRKTREVIGI 353 (686)
T ss_pred EEEEcCCCCCceEEEecCCCccc---CeEEECCCCCCEEEEEEEECC-EEEEEEEeCCEEEEEEEcCCCCceEEe
Confidence 3333322 3 44445442111 1222233 236777777722 3344444455 456667655444433
No 370
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.48 E-value=0.0004 Score=78.08 Aligned_cols=95 Identities=13% Similarity=0.142 Sum_probs=78.7
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEE-EEEECCCCCeEEEEeCCCcEEEEeCCCCCce
Q 003840 511 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLIT-DVRFSPSMPRLATSSFDKTVRVWDADNPGYS 589 (792)
Q Consensus 511 H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~-~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~ 589 (792)
-.-.|.-+.|+|.-.+||++..+|.|.++.+. ...+.++..|...++ +++|.|||+.||+|-.||+|++.|++++...
T Consensus 19 l~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 19 LPINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred cccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCce
Confidence 34568889999999999999999999999988 778888887777777 9999999999999999999999999985544
Q ss_pred eEEecccCCCeEEEEEc
Q 003840 590 LRTFMGHSASVMSLDFH 606 (792)
Q Consensus 590 i~~~~~h~~~V~sl~fs 606 (792)
..........|.++-|.
T Consensus 98 ~~~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 98 VSFLFSVETDISKGIWD 114 (665)
T ss_pred eccccccccchheeecc
Confidence 43333345567777775
No 371
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.44 E-value=0.045 Score=60.41 Aligned_cols=219 Identities=11% Similarity=0.107 Sum_probs=108.0
Q ss_pred CCCEEEEEe-CCCeEEEEECCC----CceeEEecc---CC----CCEEEEEECCCCCeEEEEeC------CCcEEEEeCC
Q 003840 523 DGKLLATGG-HDKKAVLWHTDT----LKSKTNLEE---HS----SLITDVRFSPSMPRLATSSF------DKTVRVWDAD 584 (792)
Q Consensus 523 dg~~Lasgs-~Dg~I~vWdl~t----~~~~~~l~~---h~----~~V~~i~fspdg~~Lasgs~------Dg~V~IWdl~ 584 (792)
+.++|++.+ ..+.|+|+|+.+ .+..++++. +. ..-..+..-|+|.+++++-. -|.+.++|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 456777776 678999999973 344555542 11 22334455678888887622 2457777776
Q ss_pred CCCceeEEeccc---CCCeEEEEEcCCCCeEEEEEeC--------------------CCcEEEEEcCCCeeEEEeeCC--
Q 003840 585 NPGYSLRTFMGH---SASVMSLDFHPNKDDLICSCDG--------------------DGEIRYWSINNGSCTRVFKGG-- 639 (792)
Q Consensus 585 s~~~~i~~~~~h---~~~V~sl~fspd~~~ll~sgs~--------------------Dg~I~iwdl~~~~~~~~~~~~-- 639 (792)
+ ......+... ...-+++-|.|..+. ++|... ..++.+||+.+.+.+.++.-+
T Consensus 166 t-f~v~g~We~~~~~~~~gYDfw~qpr~nv-MiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~ 243 (461)
T PF05694_consen 166 T-FEVKGRWEKDRGPQPFGYDFWYQPRHNV-MISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEE 243 (461)
T ss_dssp T---EEEE--SB-TT------EEEETTTTE-EEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TT
T ss_pred c-ccccceeccCCCCCCCCCCeEEcCCCCE-EEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCC
Confidence 5 3444444432 234567778887554 445432 357999999999999988754
Q ss_pred ---eeEEEEe--cCCCEEEEEEc-CCeEEEE-ECCCC----eEEEEecCC-----------------CCCeEEEEEcCCC
Q 003840 640 ---TAQMRFQ--PHLGRYLAAAA-ENVVSIL-DAETQ----ACRLSLQGH-----------------TKPIDSVCWDPSG 691 (792)
Q Consensus 640 ---~~~v~~s--p~~~~lla~s~-dg~I~i~-D~~t~----~~~~~l~~h-----------------~~~V~sv~~spdg 691 (792)
...++|. |+..+-++++. ...|..| ..+.+ +.+..+... ..-|+.|.+|.|.
T Consensus 244 g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDD 323 (461)
T PF05694_consen 244 GQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDD 323 (461)
T ss_dssp EEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS
T ss_pred CCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCC
Confidence 2345654 44555555544 4444444 43443 223333211 2347899999999
Q ss_pred CEEEEEeCC--eEEEEECCCCCCcceEEEeecCC----------------CceEEEEEeCCCCEEEEEEc
Q 003840 692 ELLASVSED--SVRVWTVGSGSEGECVHELSCNG----------------NKFHSCVFHPTYPSLLVIGC 743 (792)
Q Consensus 692 ~~Las~s~d--~I~IwDl~s~~~~~~i~~~~~~~----------------~~i~si~fspdg~~L~sgs~ 743 (792)
++|..++.- .|+-||+......+.+..+...+ +....+.+|-||+.|++..+
T Consensus 324 rfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTnS 393 (461)
T PF05694_consen 324 RFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTNS 393 (461)
T ss_dssp -EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE--
T ss_pred CEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEee
Confidence 999988765 89999999877767665544221 12366788999999888764
No 372
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=97.43 E-value=0.058 Score=59.18 Aligned_cols=66 Identities=9% Similarity=0.016 Sum_probs=41.4
Q ss_pred CceEEEEEeC-------CCCEEEEEEcCCeEEEEECCCCcEE----EE-cccCCCeEEEEEeCCCCEEEEEeCCCcEE
Q 003840 724 NKFHSCVFHP-------TYPSLLVIGCYQSLELWNMSENKTM----TL-TAHEGLIAALAVSTETGYVASASHDKFVK 789 (792)
Q Consensus 724 ~~i~si~fsp-------dg~~L~sgs~dg~I~IwDl~~~~~~----~~-~~h~~~V~sl~fspdg~~LaSgs~DG~I~ 789 (792)
..+..+.|.. .+.+|++.-..+.|...++++...+ .+ ......+..|++.|||.++++-+.+|.|+
T Consensus 253 ~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 253 SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp --EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 4455666653 3344555444568888888755333 22 23445899999999999988888888875
No 373
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=97.40 E-value=0.033 Score=62.95 Aligned_cols=118 Identities=9% Similarity=0.055 Sum_probs=83.3
Q ss_pred CCeEEEEEcCCC----CEEEEEeCCCeEEEEECC-----CCceeEEecc-C--CCC--EEEEEECCCCCeEEEEeCCCcE
Q 003840 513 SKVICCHFSSDG----KLLATGGHDKKAVLWHTD-----TLKSKTNLEE-H--SSL--ITDVRFSPSMPRLATSSFDKTV 578 (792)
Q Consensus 513 ~~V~~lafspdg----~~Lasgs~Dg~I~vWdl~-----t~~~~~~l~~-h--~~~--V~~i~fspdg~~Lasgs~Dg~V 578 (792)
..|..++|.|-+ ..|++.-..+.|.||-+. ..+.+..-.. . .-+ -..+.|+|....|++-.....-
T Consensus 57 EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvS 136 (671)
T PF15390_consen 57 EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVS 136 (671)
T ss_pred ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCcee
Confidence 458999999843 245556678899999874 2222222111 1 111 2357899999888887777766
Q ss_pred EEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCC
Q 003840 579 RVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG 630 (792)
Q Consensus 579 ~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~ 630 (792)
.++++..+...++.-....+.|.|.||..||.+++++.+..=.-++||-...
T Consensus 137 V~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qK 188 (671)
T PF15390_consen 137 VLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQK 188 (671)
T ss_pred EeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchh
Confidence 7788876666665555677899999999999999988887777889986543
No 374
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.40 E-value=0.022 Score=66.96 Aligned_cols=185 Identities=11% Similarity=0.063 Sum_probs=106.2
Q ss_pred CCCeEEEEEcCCCCeEEEEEe-----CC--CcEEEEEcCCCeeEEEee-CCeeEEEEecCCCEEEEEEcC----------
Q 003840 597 SASVMSLDFHPNKDDLICSCD-----GD--GEIRYWSINNGSCTRVFK-GGTAQMRFQPHLGRYLAAAAE---------- 658 (792)
Q Consensus 597 ~~~V~sl~fspd~~~ll~sgs-----~D--g~I~iwdl~~~~~~~~~~-~~~~~v~~sp~~~~lla~s~d---------- 658 (792)
...+.+.+++|++..++++.. .| ..|.+++.... ...... .....-.|+|+++.+++....
T Consensus 349 ~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~-~~~lt~g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~ 427 (591)
T PRK13616 349 MGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGV-AVQVLEGHSLTRPSWSLDADAVWVVVDGNTVVRVIRDP 427 (591)
T ss_pred ccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCc-ceeeecCCCCCCceECCCCCceEEEecCcceEEEeccC
Confidence 346789999999998877762 23 35666665322 222222 235668899998877766533
Q ss_pred --CeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEE---EECCCCCCcce--EEEeec-CCCceEEEE
Q 003840 659 --NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRV---WTVGSGSEGEC--VHELSC-NGNKFHSCV 730 (792)
Q Consensus 659 --g~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d~I~I---wDl~s~~~~~~--i~~~~~-~~~~i~si~ 730 (792)
+.+.+.+++.+.... .....|..+.|+|||..|+....+.|++ -....+. ... ...+.. ....+..+.
T Consensus 428 ~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~-~~l~~~~~l~~~l~~~~~~l~ 503 (591)
T PRK13616 428 ATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQ-YALTNPREVGPGLGDTAVSLD 503 (591)
T ss_pred CCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCc-eeecccEEeecccCCccccce
Confidence 233333444333222 2345799999999999998877666666 3323331 111 112222 233367899
Q ss_pred EeCCCCEEEEEEcCCe--EEEEECCCCcEEEEcc--cCCCeEEEEEeCCCCEEEEEeCCCcEE
Q 003840 731 FHPTYPSLLVIGCYQS--LELWNMSENKTMTLTA--HEGLIAALAVSTETGYVASASHDKFVK 789 (792)
Q Consensus 731 fspdg~~L~sgs~dg~--I~IwDl~~~~~~~~~~--h~~~V~sl~fspdg~~LaSgs~DG~I~ 789 (792)
|..++.. +++..++. |+..++.......+.. ....+.+|+-+++ .|+....+|.+.
T Consensus 504 W~~~~~L-~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~~ 563 (591)
T PRK13616 504 WRTGDSL-VVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTDARAVLQ 563 (591)
T ss_pred EecCCEE-EEEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEcCCceEE
Confidence 9999984 45555543 4444555433222222 3556777776653 344555666443
No 375
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.40 E-value=0.14 Score=53.45 Aligned_cols=193 Identities=12% Similarity=0.091 Sum_probs=119.1
Q ss_pred eeEEeccC-CCCEEEEEECCCCCeEEEEeCCC--cEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcE
Q 003840 546 SKTNLEEH-SSLITDVRFSPSMPRLATSSFDK--TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEI 622 (792)
Q Consensus 546 ~~~~l~~h-~~~V~~i~fspdg~~Lasgs~Dg--~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I 622 (792)
.+.++... ....-.+.|..++.++-+.+.-| .|+.+|+.++.............-..|++.. +.++.-.-.++..
T Consensus 35 vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~--d~l~qLTWk~~~~ 112 (264)
T PF05096_consen 35 VVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILG--DKLYQLTWKEGTG 112 (264)
T ss_dssp EEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEET--TEEEEEESSSSEE
T ss_pred EEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEEC--CEEEEEEecCCeE
Confidence 34444422 23345677877787777777666 6899999984332233223333445566663 4566667789999
Q ss_pred EEEEcCCCeeEEEeeCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCC-----CCCeEEEEEcCCCCEEEEE
Q 003840 623 RYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGH-----TKPIDSVCWDPSGELLASV 697 (792)
Q Consensus 623 ~iwdl~~~~~~~~~~~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h-----~~~V~sv~~spdg~~Las~ 697 (792)
.+||.++.+.+..+.-....--...++..++.......|+++|.++.+....+... -..++-+.|. +|.+.|-.
T Consensus 113 f~yd~~tl~~~~~~~y~~EGWGLt~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANV 191 (264)
T PF05096_consen 113 FVYDPNTLKKIGTFPYPGEGWGLTSDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANV 191 (264)
T ss_dssp EEEETTTTEEEEEEE-SSS--EEEECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEE
T ss_pred EEEccccceEEEEEecCCcceEEEcCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEe
Confidence 99999999988877543332223367788999888999999999988776665432 1245667775 56666655
Q ss_pred eCC-eEEEEECCCCCCcceEEEeec---------------CCCceEEEEEeCCCCEEEEEEcC
Q 003840 698 SED-SVRVWTVGSGSEGECVHELSC---------------NGNKFHSCVFHPTYPSLLVIGCY 744 (792)
Q Consensus 698 s~d-~I~IwDl~s~~~~~~i~~~~~---------------~~~~i~si~fspdg~~L~sgs~d 744 (792)
-.. .|...|..+| ..+..+.. ...-.+.|+|.|....|++.+..
T Consensus 192 W~td~I~~Idp~tG---~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~ 251 (264)
T PF05096_consen 192 WQTDRIVRIDPETG---KVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKL 251 (264)
T ss_dssp TTSSEEEEEETTT----BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT
T ss_pred CCCCeEEEEeCCCC---eEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCC
Confidence 544 8888898887 33333211 13458999999988877777654
No 376
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.39 E-value=0.078 Score=63.12 Aligned_cols=270 Identities=15% Similarity=0.131 Sum_probs=153.3
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEC--CCCceeEEe--ccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCc
Q 003840 513 SKVICCHFSSDGKLLATGGHDKKAVLWHT--DTLKSKTNL--EEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGY 588 (792)
Q Consensus 513 ~~V~~lafspdg~~Lasgs~Dg~I~vWdl--~t~~~~~~l--~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~ 588 (792)
..|.-.+|-.|..+|.++..||.+.-|.+ .++..-..- .-...++.--.|+..++.-+.+..|.-..+|.-+. +.
T Consensus 584 RSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~-kL 662 (1096)
T KOG1897|consen 584 RSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNG-KL 662 (1096)
T ss_pred hheeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCC-cE
Confidence 45666677777889999999999876654 444332222 22345666667777777666667777777777653 22
Q ss_pred eeEEecccCCCeEEE-EEcC-CCCeEEEEEeCCCcEEEEEcCCCeeE--EEe--eCCeeEEEEecCCCEEEEEEc-----
Q 003840 589 SLRTFMGHSASVMSL-DFHP-NKDDLICSCDGDGEIRYWSINNGSCT--RVF--KGGTAQMRFQPHLGRYLAAAA----- 657 (792)
Q Consensus 589 ~i~~~~~h~~~V~sl-~fsp-d~~~ll~sgs~Dg~I~iwdl~~~~~~--~~~--~~~~~~v~~sp~~~~lla~s~----- 657 (792)
....+. . ..+..+ .|+. .....++++. .+.+++.-++.-..+ +++ ......+++.+..-.+.+.+.
T Consensus 663 v~spls-~-kev~~~c~f~s~a~~d~l~~~~-~~~l~i~tid~iqkl~irtvpl~~~prrI~~q~~sl~~~v~s~r~e~~ 739 (1096)
T KOG1897|consen 663 VYSPLS-L-KEVNHMCPFNSDAYPDSLASAN-GGALTIGTIDEIQKLHIRTVPLGESPRRICYQESSLTFGVLSNRIESS 739 (1096)
T ss_pred EEeccc-h-HHhhhhcccccccCCceEEEec-CCceEEEEecchhhcceeeecCCCChhheEecccceEEEEEecccccc
Confidence 221111 1 111111 1221 1222343443 566777766543222 222 234445666653333333222
Q ss_pred ------C---CeEEEEECCCCeEEEEecCC-C---CCeEEEEEcCC-CCEEEEEeC-----------CeEEEEECCCCCC
Q 003840 658 ------E---NVVSILDAETQACRLSLQGH-T---KPIDSVCWDPS-GELLASVSE-----------DSVRVWTVGSGSE 712 (792)
Q Consensus 658 ------d---g~I~i~D~~t~~~~~~l~~h-~---~~V~sv~~spd-g~~Las~s~-----------d~I~IwDl~s~~~ 712 (792)
. ..++++|-.+.+.+...+-. . ..|.++.|..| +.++++|+. +.|.||.+.....
T Consensus 740 ~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~ 819 (1096)
T KOG1897|consen 740 AEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNS 819 (1096)
T ss_pred hhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCc
Confidence 1 24677787777665443321 1 23445558777 667777752 2577777766444
Q ss_pred cceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEE
Q 003840 713 GECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKL 790 (792)
Q Consensus 713 ~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~~~~h~~~V~sl~fspdg~~LaSgs~DG~I~I 790 (792)
.+.+.+....+..+.-+.| +|++||.. ...|++|++.+.+.+ ....|..++..+...-.+..|+.|..=++|.+
T Consensus 820 L~~v~e~~v~Gav~aL~~f--ngkllA~I--n~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitl 894 (1096)
T KOG1897|consen 820 LELVAETVVKGAVYALVEF--NGKLLAGI--NQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITL 894 (1096)
T ss_pred eeeeeeeeeccceeehhhh--CCeEEEec--CcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEE
Confidence 4555544433333322233 45555544 458999999998666 45578888999999889999998876666554
No 377
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.37 E-value=0.057 Score=60.35 Aligned_cols=88 Identities=20% Similarity=0.325 Sum_probs=57.8
Q ss_pred EEEEcCCCCEEEEEeCCCeEEE---EECC-CC----ceeEEecc---CC--CCEEEEEECC-----------CCCeEEEE
Q 003840 517 CCHFSSDGKLLATGGHDKKAVL---WHTD-TL----KSKTNLEE---HS--SLITDVRFSP-----------SMPRLATS 572 (792)
Q Consensus 517 ~lafspdg~~Lasgs~Dg~I~v---Wdl~-t~----~~~~~l~~---h~--~~V~~i~fsp-----------dg~~Lasg 572 (792)
+++.+|++++||.+..+..|.+ |+.+ .+ .......+ +. ..|+++.|-| |...|++|
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG 85 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG 85 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence 5688999999999987777665 6442 11 12222111 21 5788777644 45689999
Q ss_pred eCCCcEEEEeCCCCCceeEEecccCCCeEEEEEc
Q 003840 573 SFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFH 606 (792)
Q Consensus 573 s~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fs 606 (792)
..+|.|++|... +..+..-.-|..+|..|.+.
T Consensus 86 ~ssG~vrfyte~--G~LL~~Q~~h~~pV~~ik~~ 117 (415)
T PF14655_consen 86 TSSGYVRFYTEN--GVLLLSQLLHEEPVLKIKCR 117 (415)
T ss_pred ecccEEEEEecc--chHHHHHhcCccceEEEEec
Confidence 999999999985 34444444467777777664
No 378
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=97.37 E-value=0.3 Score=54.76 Aligned_cols=259 Identities=15% Similarity=0.164 Sum_probs=144.2
Q ss_pred CCEEEEEeCCCeEEEEECCCCcee--EE-e-ccCCCCEEEEEECC----CC-CeEEEEeCCCcEEEEeCCCCC-------
Q 003840 524 GKLLATGGHDKKAVLWHTDTLKSK--TN-L-EEHSSLITDVRFSP----SM-PRLATSSFDKTVRVWDADNPG------- 587 (792)
Q Consensus 524 g~~Lasgs~Dg~I~vWdl~t~~~~--~~-l-~~h~~~V~~i~fsp----dg-~~Lasgs~Dg~V~IWdl~s~~------- 587 (792)
...|++|+.+|.++||+....... .. + ..-..+|..|.+-. .. ..||+ =.-..+.||.+....
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g~ 115 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEHGN 115 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcccCc
Confidence 358999999999999998543311 11 1 12346777776543 12 23444 455668888874211
Q ss_pred -ceeEEecccC--CCeEEEEEcC----CCCeEEEEEeCCCcEEEEEcCCCeeEEEeeC--CeeEEEEecCCCEEEEEEcC
Q 003840 588 -YSLRTFMGHS--ASVMSLDFHP----NKDDLICSCDGDGEIRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYLAAAAE 658 (792)
Q Consensus 588 -~~i~~~~~h~--~~V~sl~fsp----d~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~--~~~~v~~sp~~~~lla~s~d 658 (792)
..+.....|. .....+++-| .+..+|++=+.||.+.+|+-+.....+.+.. -...+.|.+..+.+++++.+
T Consensus 116 ~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~~tDsfvt~sss 195 (418)
T PF14727_consen 116 QYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCPRTDSFVTASSS 195 (418)
T ss_pred EEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEeecCCEEEEecCc
Confidence 1233333343 2333444433 2357888999999999999876655555443 23558899999999999999
Q ss_pred CeEEEEECCCC--------------------e---EEEEecCCCCCeE---EEEEcCCCCEEEEEeCCeEEEEECCCCCC
Q 003840 659 NVVSILDAETQ--------------------A---CRLSLQGHTKPID---SVCWDPSGELLASVSEDSVRVWTVGSGSE 712 (792)
Q Consensus 659 g~I~i~D~~t~--------------------~---~~~~l~~h~~~V~---sv~~spdg~~Las~s~d~I~IwDl~s~~~ 712 (792)
..|..|....- + +-+++.- ...+. .+.++.....|++-++..+.+.+-. | .
T Consensus 196 ~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nl-GE~~l~i~v~~~~~~~~~IvvLger~Lf~l~~~-G-~ 272 (418)
T PF14727_consen 196 WTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNL-GEQALDIQVVRFSSSESDIVVLGERSLFCLKDN-G-S 272 (418)
T ss_pred eeEEEecHHHhhhccccccccccccccccccccccceeEEEC-CceeEEEEEEEcCCCCceEEEEecceEEEEcCC-C-e
Confidence 88888864211 0 1111111 12222 3333334445666666666666653 2 2
Q ss_pred cceEEEeecCCCceEEEEEeC----CC---CEEEEEEcCCeEEEEECCCCcEEEEcccCCCeEEEE---EeCCCCEEEEE
Q 003840 713 GECVHELSCNGNKFHSCVFHP----TY---PSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALA---VSTETGYVASA 782 (792)
Q Consensus 713 ~~~i~~~~~~~~~i~si~fsp----dg---~~L~sgs~dg~I~IwDl~~~~~~~~~~h~~~V~sl~---fspdg~~LaSg 782 (792)
.+..+.+... +...+.|.- ++ ..+++++.++.+.||.-.+...-.-. ...+| ++. |..-..+|++-
T Consensus 273 l~~~krLd~~--p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~L~WsA~l-~~~PV-al~v~~~~~~~G~IV~L 348 (418)
T PF14727_consen 273 LRFQKRLDYN--PSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTTLVWSAQL-PHVPV-ALSVANFNGLKGLIVSL 348 (418)
T ss_pred EEEEEecCCc--eeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCeEEEecCC-CCCCE-EEEecccCCCCceEEEE
Confidence 3333444322 222222221 22 25889999999999974432222111 11222 333 23334578888
Q ss_pred eCCCcEEE
Q 003840 783 SHDKFVKL 790 (792)
Q Consensus 783 s~DG~I~I 790 (792)
++||.|.+
T Consensus 349 s~~G~L~v 356 (418)
T PF14727_consen 349 SDEGQLSV 356 (418)
T ss_pred cCCCcEEE
Confidence 88998865
No 379
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.36 E-value=0.04 Score=55.40 Aligned_cols=204 Identities=11% Similarity=0.108 Sum_probs=108.6
Q ss_pred eEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEc-CCCC-eEEEEEeCCCcEEEEEcC--CCeeEEEe-------
Q 003840 568 RLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFH-PNKD-DLICSCDGDGEIRYWSIN--NGSCTRVF------- 636 (792)
Q Consensus 568 ~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fs-pd~~-~ll~sgs~Dg~I~iwdl~--~~~~~~~~------- 636 (792)
++++-=..|.|.-||+........++.+.. +.++.+- .++. .+.+.++..-.|.-||.. .....+++
T Consensus 29 Ll~VDi~ag~v~r~D~~qn~v~ra~ie~p~--~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d~ 106 (310)
T KOG4499|consen 29 LLYVDIEAGEVHRYDIEQNKVYRAKIEGPP--SAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPDR 106 (310)
T ss_pred EEEEEeccCceehhhhhhhheEEEEEecCc--ceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCchH
Confidence 444444556677788876332222333221 2233332 1222 344455545555667733 22333331
Q ss_pred -eCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCC--------CCeEEEEEcCCCCEEEEE-eCC-eEEEE
Q 003840 637 -KGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHT--------KPIDSVCWDPSGELLASV-SED-SVRVW 705 (792)
Q Consensus 637 -~~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~--------~~V~sv~~spdg~~Las~-s~d-~I~Iw 705 (792)
+...+.-..+|++++ +.|.....-.++....+.+...+.+|. .--+.++|+.+.+.+... +.+ +|.-|
T Consensus 107 kknR~NDgkvdP~Gry-y~GtMad~~~~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~ 185 (310)
T KOG4499|consen 107 KKNRLNDGKVDPDGRY-YGGTMADFGDDLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAY 185 (310)
T ss_pred HhcccccCccCCCCce-eeeeeccccccccccccEEEEeccCCCceeeehhccCCccccccccCcEEEEEccCceEEeee
Confidence 123344567788777 444432111122222333333333332 223568898887766554 445 78778
Q ss_pred E--CCCCC--CcceEEEeec----CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeC
Q 003840 706 T--VGSGS--EGECVHELSC----NGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVST 774 (792)
Q Consensus 706 D--l~s~~--~~~~i~~~~~----~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~~~~h~~~V~sl~fsp 774 (792)
| ..++. ..+.+..+.. ..-....+++..+|...+++-..++|..+|..+++.+ .+.-....|++++|--
T Consensus 186 dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 186 DYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred ecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence 8 44542 2233333332 1112334555668887777778889999999999988 5555678899999953
No 380
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.35 E-value=0.17 Score=52.79 Aligned_cols=192 Identities=14% Similarity=0.128 Sum_probs=116.4
Q ss_pred ceeeeeeeecCCCC-eEEEEEcCCCCEEEEEeCCC--eEEEEECCCCceeEEeccCC-CCEEEEEECCCCCeEEEEeCCC
Q 003840 501 SFKEANSVRASTSK-VICCHFSSDGKLLATGGHDK--KAVLWHTDTLKSKTNLEEHS-SLITDVRFSPSMPRLATSSFDK 576 (792)
Q Consensus 501 ~~~~~~~l~~H~~~-V~~lafspdg~~Lasgs~Dg--~I~vWdl~t~~~~~~l~~h~-~~V~~i~fspdg~~Lasgs~Dg 576 (792)
.++.+.++...... .-.+.|..+|.++-+.+.-| .|+.+|+++++......-.. ..-..|+.. +++.+...=.++
T Consensus 32 ~~~vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~ 110 (264)
T PF05096_consen 32 SYEVVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEG 110 (264)
T ss_dssp EEEEEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSS
T ss_pred eeEEEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCC
Confidence 34445554433333 34677878888888887766 69999999998776554221 112223333 233344444578
Q ss_pred cEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeC--------CeeEEEEecC
Q 003840 577 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG--------GTAQMRFQPH 648 (792)
Q Consensus 577 ~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~--------~~~~v~~sp~ 648 (792)
...+||.++ -+.+..+. ..+.=+.|+ .++..++ ..+....|+++|..+.+..+.+.- ..+.+.|.
T Consensus 111 ~~f~yd~~t-l~~~~~~~-y~~EGWGLt--~dg~~Li-~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-- 183 (264)
T PF05096_consen 111 TGFVYDPNT-LKKIGTFP-YPGEGWGLT--SDGKRLI-MSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-- 183 (264)
T ss_dssp EEEEEETTT-TEEEEEEE--SSS--EEE--ECSSCEE-EE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE--
T ss_pred eEEEEcccc-ceEEEEEe-cCCcceEEE--cCCCEEE-EECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE--
Confidence 899999987 55666664 345667777 4456666 455577899999988877665532 23345554
Q ss_pred CCEEEEEEc-CCeEEEEECCCCeEEEEecC------------C---CCCeEEEEEcCCCCEEEEEeCC
Q 003840 649 LGRYLAAAA-ENVVSILDAETQACRLSLQG------------H---TKPIDSVCWDPSGELLASVSED 700 (792)
Q Consensus 649 ~~~lla~s~-dg~I~i~D~~t~~~~~~l~~------------h---~~~V~sv~~spdg~~Las~s~d 700 (792)
++.+++--. ...|...|..+++++..+.. + ..-.+.|+|+|....|...+..
T Consensus 184 ~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~ 251 (264)
T PF05096_consen 184 NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKL 251 (264)
T ss_dssp TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT
T ss_pred cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCC
Confidence 355555444 77899999999998876531 1 2457899999988877766665
No 381
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.34 E-value=0.0041 Score=68.84 Aligned_cols=133 Identities=14% Similarity=0.129 Sum_probs=92.6
Q ss_pred CEEEE-EEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCC--------EEEEEeCCeEEEEECCCCCCcceEEEee
Q 003840 650 GRYLA-AAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGE--------LLASVSEDSVRVWTVGSGSEGECVHELS 720 (792)
Q Consensus 650 ~~lla-~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~--------~Las~s~d~I~IwDl~s~~~~~~i~~~~ 720 (792)
+.++. +.....|+-.|++.|+.+..+.-+.. |.-+.+.|+.+ .|+..+...|.-||.+-.... .+....
T Consensus 346 nlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~-kl~~~q 423 (644)
T KOG2395|consen 346 NLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN-KLAVVQ 423 (644)
T ss_pred ceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcc-eeeeee
Confidence 44433 33457889999999999999987766 77788888654 344445558999998753321 222222
Q ss_pred cC----CCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEeCC
Q 003840 721 CN----GNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHD 785 (792)
Q Consensus 721 ~~----~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~~~~h~~~V~sl~fspdg~~LaSgs~D 785 (792)
.+ ...+.|++-..+| +|++|+.+|.|++||--..... .+.+-..+|..|..+.||++|++.+..
T Consensus 424 ~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~t 492 (644)
T KOG2395|consen 424 SKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCKT 492 (644)
T ss_pred ccccccccccceeeecCCc-eEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEeccc
Confidence 22 3345566655555 7999999999999997333222 677888999999999999988766543
No 382
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.33 E-value=0.28 Score=58.59 Aligned_cols=214 Identities=12% Similarity=0.095 Sum_probs=126.5
Q ss_pred eEEEEeCCCcEEEEeCCCCC-ceeEEecccCCCeEEEEEcCCCCeEEEEEeCC--------------CcEEEEEcCCCee
Q 003840 568 RLATSSFDKTVRVWDADNPG-YSLRTFMGHSASVMSLDFHPNKDDLICSCDGD--------------GEIRYWSINNGSC 632 (792)
Q Consensus 568 ~Lasgs~Dg~V~IWdl~s~~-~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~D--------------g~I~iwdl~~~~~ 632 (792)
.|+++. .+.+++..++.-. ..++++ .-......|++.+..- ++.+.+.- ..++++|-++.+.
T Consensus 686 ~l~~~~-~~~l~i~tid~iqkl~irtv-pl~~~prrI~~q~~sl-~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~v 762 (1096)
T KOG1897|consen 686 SLASAN-GGALTIGTIDEIQKLHIRTV-PLGESPRRICYQESSL-TFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEV 762 (1096)
T ss_pred eEEEec-CCceEEEEecchhhcceeee-cCCCChhheEecccce-EEEEEecccccchhhcCCcceEEEEEEecCCceeE
Confidence 455544 3447777766422 223442 2344566777776322 33232221 2467788777776
Q ss_pred EEEeeC-------CeeEEEEecC-CCEEEEEEc----------CCeEEEEECCCCeEEEEecC--CCCCeEEEEEcCCCC
Q 003840 633 TRVFKG-------GTAQMRFQPH-LGRYLAAAA----------ENVVSILDAETQACRLSLQG--HTKPIDSVCWDPSGE 692 (792)
Q Consensus 633 ~~~~~~-------~~~~v~~sp~-~~~lla~s~----------dg~I~i~D~~t~~~~~~l~~--h~~~V~sv~~spdg~ 692 (792)
+..++- .+.++.|..+ +.++++|+. .|.|.||.......+..... -.+.+.+++. -+|+
T Consensus 763 l~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~-fngk 841 (1096)
T KOG1897|consen 763 LSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVE-FNGK 841 (1096)
T ss_pred EeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhh-hCCe
Confidence 655432 1233446666 456666654 47888888776433332222 2234444443 3566
Q ss_pred EEEEEeCCeEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEE--ECCCCcEE--EEcccCCCeE
Q 003840 693 LLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELW--NMSENKTM--TLTAHEGLIA 768 (792)
Q Consensus 693 ~Las~s~d~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~Iw--Dl~~~~~~--~~~~h~~~V~ 768 (792)
+||+-+ -.|++|++.+. +.++.-..+...+..+...-.++.|++|..-+.|.+. +..++... .-..+..+++
T Consensus 842 llA~In-~~vrLye~t~~---~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wmt 917 (1096)
T KOG1897|consen 842 LLAGIN-QSVRLYEWTTE---RELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWMT 917 (1096)
T ss_pred EEEecC-cEEEEEEcccc---ceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehhhCcccee
Confidence 665432 27888888765 4455555567788888999999999999988866655 44454455 3345778889
Q ss_pred EEEEeCCCCEEEEEeCCCcEEE
Q 003840 769 ALAVSTETGYVASASHDKFVKL 790 (792)
Q Consensus 769 sl~fspdg~~LaSgs~DG~I~I 790 (792)
++.+-.+..|+ .+..+|.+++
T Consensus 918 aveil~~d~yl-gae~~gNlf~ 938 (1096)
T KOG1897|consen 918 AVEILDDDTYL-GAENSGNLFT 938 (1096)
T ss_pred eEEEecCceEE-eecccccEEE
Confidence 99887665554 4556777665
No 383
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.28 E-value=0.027 Score=60.73 Aligned_cols=186 Identities=17% Similarity=0.188 Sum_probs=112.8
Q ss_pred EEEEcCCCCeEEEEEeCCCcEEEEEcCCCee-EEEeeCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecC---
Q 003840 602 SLDFHPNKDDLICSCDGDGEIRYWSINNGSC-TRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQG--- 677 (792)
Q Consensus 602 sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~-~~~~~~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~--- 677 (792)
+..|.++...++++--..+.|.-|+..+++. ..........+.....++.|+++... +.+++.+++..+..+..
T Consensus 29 gP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~~p~~~~~~~~~d~~g~Lv~~~~g--~~~~~~~~~~~~t~~~~~~~ 106 (307)
T COG3386 29 GPVWDPDRGALLWVDILGGRIHRLDPETGKKRVFPSPGGFSSGALIDAGGRLIACEHG--VRLLDPDTGGKITLLAEPED 106 (307)
T ss_pred CccCcCCCCEEEEEeCCCCeEEEecCCcCceEEEECCCCcccceeecCCCeEEEEccc--cEEEeccCCceeEEeccccC
Confidence 4457788777777777788999999986643 33444455555555555555554433 34455455444222211
Q ss_pred --CCCCeEEEEEcCCCCEEEEEeC---------C-eEEEEECC-CCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcC
Q 003840 678 --HTKPIDSVCWDPSGELLASVSE---------D-SVRVWTVG-SGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY 744 (792)
Q Consensus 678 --h~~~V~sv~~spdg~~Las~s~---------d-~I~IwDl~-s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~d 744 (792)
.....+.+...|+|.+.++... . .-.||-+. .+ ..++.+..+-..-+.++|+||++.++++.+.
T Consensus 107 ~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g---~~~~l~~~~~~~~NGla~SpDg~tly~aDT~ 183 (307)
T COG3386 107 GLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDG---GVVRLLDDDLTIPNGLAFSPDGKTLYVADTP 183 (307)
T ss_pred CCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCC---CEEEeecCcEEecCceEECCCCCEEEEEeCC
Confidence 1234567888899998776544 1 23455554 22 3334444434456789999999988888776
Q ss_pred -CeEEEEECCC--C----c--EEEEcccCCCeEEEEEeCCCCEEEEEeCCC-cEEEeC
Q 003840 745 -QSLELWNMSE--N----K--TMTLTAHEGLIAALAVSTETGYVASASHDK-FVKLWK 792 (792)
Q Consensus 745 -g~I~IwDl~~--~----~--~~~~~~h~~~V~sl~fspdg~~LaSgs~DG-~I~IWd 792 (792)
+.|+-|++.. + + .+......+..-.++...+|.+.+++..+| .|.+|+
T Consensus 184 ~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~ 241 (307)
T COG3386 184 ANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFN 241 (307)
T ss_pred CCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEEC
Confidence 6888887762 1 1 112223456667788888888776555554 777764
No 384
>PHA02713 hypothetical protein; Provisional
Probab=97.23 E-value=0.021 Score=67.23 Aligned_cols=213 Identities=8% Similarity=0.069 Sum_probs=106.9
Q ss_pred eEEEEECCCCceeE--EeccCCCCEEEEEECCCCCeEEEEeCC------CcEEEEeCCCCCceeEEecc---cCCCeEEE
Q 003840 535 KAVLWHTDTLKSKT--NLEEHSSLITDVRFSPSMPRLATSSFD------KTVRVWDADNPGYSLRTFMG---HSASVMSL 603 (792)
Q Consensus 535 ~I~vWdl~t~~~~~--~l~~h~~~V~~i~fspdg~~Lasgs~D------g~V~IWdl~s~~~~i~~~~~---h~~~V~sl 603 (792)
.+..||..+.+... .+...... .+++. -++.++++|+.+ ..|..||..+... ..+.. ..... ++
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~-~~~a~-l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W--~~~~~m~~~R~~~-~~ 347 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIIN-YASAI-VDNEIIIAGGYNFNNPSLNKVYKINIENKIH--VELPPMIKNRCRF-SL 347 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccc-eEEEE-ECCEEEEEcCCCCCCCccceEEEEECCCCeE--eeCCCCcchhhce-eE
Confidence 56778877654322 22211111 12222 256677777754 3477888876322 11111 11111 22
Q ss_pred EEcCCCCeEEEEEeCCC-----cEEEEEcCCCeeEEE--eeCCeeEE-EEecCCCEEEEEEcC-----------------
Q 003840 604 DFHPNKDDLICSCDGDG-----EIRYWSINNGSCTRV--FKGGTAQM-RFQPHLGRYLAAAAE----------------- 658 (792)
Q Consensus 604 ~fspd~~~ll~sgs~Dg-----~I~iwdl~~~~~~~~--~~~~~~~v-~~sp~~~~lla~s~d----------------- 658 (792)
+.. ++.+++.||.++ .+.+||..+.+.... +....... ...-++..+++|+.+
T Consensus 348 ~~~--~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~ 425 (557)
T PHA02713 348 AVI--DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDME 425 (557)
T ss_pred EEE--CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCCccccccccccccccccc
Confidence 222 345777787654 478899887754432 11111111 122244444555543
Q ss_pred ------CeEEEEECCCCeEE--EEecCCCCCeEEEEEcCCCCEEEEEeCC-------eEEEEECCCCCCcceEEEeecCC
Q 003840 659 ------NVVSILDAETQACR--LSLQGHTKPIDSVCWDPSGELLASVSED-------SVRVWTVGSGSEGECVHELSCNG 723 (792)
Q Consensus 659 ------g~I~i~D~~t~~~~--~~l~~h~~~V~sv~~spdg~~Las~s~d-------~I~IwDl~s~~~~~~i~~~~~~~ 723 (792)
..+..||.++.+-. ..+...... .+++ .-++++.+.|+.+ .+..||..+.+.+..+..+....
T Consensus 426 ~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~-~~~~-~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r 503 (557)
T PHA02713 426 EDTHSSNKVIRYDTVNNIWETLPNFWTGTIR-PGVV-SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRL 503 (557)
T ss_pred ccccccceEEEECCCCCeEeecCCCCccccc-CcEE-EECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccc
Confidence 24778888776432 222111111 1222 2346666666532 36778887622344444443333
Q ss_pred CceEEEEEeCCCCEEEEEEcCC--eEEEEECCCCcEE
Q 003840 724 NKFHSCVFHPTYPSLLVIGCYQ--SLELWNMSENKTM 758 (792)
Q Consensus 724 ~~i~si~fspdg~~L~sgs~dg--~I~IwDl~~~~~~ 758 (792)
.....++ -+++..++|+.++ .+..||..+.+..
T Consensus 504 ~~~~~~~--~~~~iyv~Gg~~~~~~~e~yd~~~~~W~ 538 (557)
T PHA02713 504 SALHTIL--HDNTIMMLHCYESYMLQDTFNVYTYEWN 538 (557)
T ss_pred ccceeEE--ECCEEEEEeeecceeehhhcCccccccc
Confidence 2222223 3777888888887 7888998887765
No 385
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.19 E-value=0.02 Score=67.34 Aligned_cols=229 Identities=15% Similarity=0.128 Sum_probs=118.0
Q ss_pred CCCCEEEEEeCC------CeEEEEECCCCceeEEecc-CCCCEEEEEECCCCCeEEEEeCC-C-----cEEEEeCCCCCc
Q 003840 522 SDGKLLATGGHD------KKAVLWHTDTLKSKTNLEE-HSSLITDVRFSPSMPRLATSSFD-K-----TVRVWDADNPGY 588 (792)
Q Consensus 522 pdg~~Lasgs~D------g~I~vWdl~t~~~~~~l~~-h~~~V~~i~fspdg~~Lasgs~D-g-----~V~IWdl~s~~~ 588 (792)
..+.++++||.+ ..|..||..+........- ....-.++++. ++.++++|+.| | ++..||...+..
T Consensus 283 ~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W 361 (571)
T KOG4441|consen 283 VSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQW 361 (571)
T ss_pred CCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCce
Confidence 345567777766 3577888877643332221 22223334443 45788899988 3 577888876432
Q ss_pred eeEEecccCCCeEEEEEcCCCCeEEEEEeCCCc-----EEEEEcCCCeeEEEe--eCCeeEEEEec-CCCEEEEEEcC--
Q 003840 589 SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGE-----IRYWSINNGSCTRVF--KGGTAQMRFQP-HLGRYLAAAAE-- 658 (792)
Q Consensus 589 ~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~-----I~iwdl~~~~~~~~~--~~~~~~v~~sp-~~~~lla~s~d-- 658 (792)
..+..-...-..+....-++.+.++|+.||. |..||..+.+....- ........... ++..+++|+.+
T Consensus 362 --~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~ 439 (571)
T KOG4441|consen 362 --TPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGS 439 (571)
T ss_pred --eccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCC
Confidence 1111111111112222224567888988864 777888776543322 22222333333 33444555543
Q ss_pred ----CeEEEEECCCCeEEE--EecCCCCCeEEEEEcCCCCEEEEEeCC------eEEEEECCCCCCcceEEEeecCCCce
Q 003840 659 ----NVVSILDAETQACRL--SLQGHTKPIDSVCWDPSGELLASVSED------SVRVWTVGSGSEGECVHELSCNGNKF 726 (792)
Q Consensus 659 ----g~I~i~D~~t~~~~~--~l~~h~~~V~sv~~spdg~~Las~s~d------~I~IwDl~s~~~~~~i~~~~~~~~~i 726 (792)
..+..||..+.+-.. .+..-.... .++. -++.+.+.|+.+ +|..||..+. .+..+..+......+
T Consensus 440 ~~~l~sve~YDP~t~~W~~~~~M~~~R~~~-g~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~-~W~~v~~m~~~rs~~ 516 (571)
T KOG4441|consen 440 SNCLNSVECYDPETNTWTLIAPMNTRRSGF-GVAV-LNGKIYVVGGFDGTSALSSVERYDPETN-QWTMVAPMTSPRSAV 516 (571)
T ss_pred ccccceEEEEcCCCCceeecCCcccccccc-eEEE-ECCEEEEECCccCCCccceEEEEcCCCC-ceeEcccCccccccc
Confidence 367889988765432 222111122 2332 345666666644 4778888764 222222222222222
Q ss_pred EEEEEeCCCCEEEEEEcCC-----eEEEEECCCCcEE
Q 003840 727 HSCVFHPTYPSLLVIGCYQ-----SLELWNMSENKTM 758 (792)
Q Consensus 727 ~si~fspdg~~L~sgs~dg-----~I~IwDl~~~~~~ 758 (792)
. +..-++...++|+.|| +|..||..+++..
T Consensus 517 g--~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W~ 551 (571)
T KOG4441|consen 517 G--VVVLGGKLYAVGGFDGNNNLNTVECYDPETDTWT 551 (571)
T ss_pred c--EEEECCEEEEEecccCccccceeEEcCCCCCcee
Confidence 1 2223566677777775 6888888777655
No 386
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.19 E-value=0.038 Score=55.56 Aligned_cols=161 Identities=15% Similarity=0.173 Sum_probs=102.1
Q ss_pred EEEEEeCCCeEEEEEC--CCCceeEEecc-----CCCCEEEEEECCCCCeEEEEeC---------CCcEEEEeCCCCCce
Q 003840 526 LLATGGHDKKAVLWHT--DTLKSKTNLEE-----HSSLITDVRFSPSMPRLATSSF---------DKTVRVWDADNPGYS 589 (792)
Q Consensus 526 ~Lasgs~Dg~I~vWdl--~t~~~~~~l~~-----h~~~V~~i~fspdg~~Lasgs~---------Dg~V~IWdl~s~~~~ 589 (792)
+.+.++..-.|.-||. +..+...++.. .....++-..+|+|++++-.-. .|.++.|-... .
T Consensus 73 ~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d~kknR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h---~ 149 (310)
T KOG4499|consen 73 FAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPDRKKNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGH---Q 149 (310)
T ss_pred EEEeecceEEEEEcccccceeeeeeeccccCchHHhcccccCccCCCCceeeeeeccccccccccccEEEEeccCC---C
Confidence 3444444444555773 23333333221 2445666678899988543322 24566665543 2
Q ss_pred eEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEE--cCCCee-----EEEeeC-------CeeEEEEecCCCEEEEE
Q 003840 590 LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWS--INNGSC-----TRVFKG-------GTAQMRFQPHLGRYLAA 655 (792)
Q Consensus 590 i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwd--l~~~~~-----~~~~~~-------~~~~v~~sp~~~~lla~ 655 (792)
+..+...-.--+.|+|..+.+.+.++-+.+-+|.-|| ..+|.. +..++. ....+++...++.++++
T Consensus 150 v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~ 229 (310)
T KOG4499|consen 150 VELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVAT 229 (310)
T ss_pred ceeeehhccCCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEE
Confidence 2233333344567899988888888888889998888 445432 222221 11225556677778888
Q ss_pred EcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcC
Q 003840 656 AAENVVSILDAETQACRLSLQGHTKPIDSVCWDP 689 (792)
Q Consensus 656 s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~sp 689 (792)
-..++|..+|..+++.+.+++-....|+|+||--
T Consensus 230 ~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 230 FNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred ecCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence 8889999999999999999998889999999964
No 387
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.18 E-value=0.086 Score=55.10 Aligned_cols=191 Identities=12% Similarity=0.123 Sum_probs=121.4
Q ss_pred eecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEecc-CCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCC
Q 003840 508 VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE-HSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP 586 (792)
Q Consensus 508 l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~-h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~ 586 (792)
+.+-+..|.++.|+|+.+.|++......-.||=...|..+.++.- .-.....|.|.-++.++++--.++.+.++.++..
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence 455666699999999999999999888888888888999888762 1233456788888878888788888988888754
Q ss_pred CceeE---------EecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCe-eE------------EEeeCCeeEEE
Q 003840 587 GYSLR---------TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS-CT------------RVFKGGTAQMR 644 (792)
Q Consensus 587 ~~~i~---------~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~-~~------------~~~~~~~~~v~ 644 (792)
...+. ...........++|.|.+..++ .+-+..-+.||.+.... .+ ..+-..+..+.
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~-~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~ 239 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLF-VAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLE 239 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCCceEE-EEEccCCcEEEEEecCCcccccccccCcccccceEeeccccce
Confidence 32221 1112255678999999987776 45555666666655332 11 11223455677
Q ss_pred EecCCCEEEEEEc-CCeEEEEECCCCeEEEEecCCC---------CCeEEEEEcCCCCEEEEEeCC
Q 003840 645 FQPHLGRYLAAAA-ENVVSILDAETQACRLSLQGHT---------KPIDSVCWDPSGELLASVSED 700 (792)
Q Consensus 645 ~sp~~~~lla~s~-dg~I~i~D~~t~~~~~~l~~h~---------~~V~sv~~spdg~~Las~s~d 700 (792)
|.+..+.+++-+. ++.|...|.... ++..+.-+. ..-..|+.+++|.+.+++-.+
T Consensus 240 ~~~~~~~LLVLS~ESr~l~Evd~~G~-~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIvSEPn 304 (316)
T COG3204 240 FNAITNSLLVLSDESRRLLEVDLSGE-VIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIVSEPN 304 (316)
T ss_pred ecCCCCcEEEEecCCceEEEEecCCC-eeeeEEeccCCCCCcccCCCcceeEECCCCCEEEEecCC
Confidence 8877777666555 556666665543 233222111 113356666666655444333
No 388
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.14 E-value=0.013 Score=65.13 Aligned_cols=138 Identities=10% Similarity=0.068 Sum_probs=96.9
Q ss_pred EEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeE------EEEEeCCCcEEEEEcCCCee--EEE-----
Q 003840 569 LATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDL------ICSCDGDGEIRYWSINNGSC--TRV----- 635 (792)
Q Consensus 569 Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~l------l~sgs~Dg~I~iwdl~~~~~--~~~----- 635 (792)
|.++.....++-.|++. ++.+..+.-+.. |.-+.+.|+.+.- -+.|-.|..|+-||.+-... +..
T Consensus 349 l~~~~~~~~l~klDIE~-GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kq 426 (644)
T KOG2395|consen 349 LMDGGEQDKLYKLDIER-GKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQ 426 (644)
T ss_pred eeCCCCcCcceeeeccc-ceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccc
Confidence 34455556688889987 788888887766 7778888764321 12466789999999884322 111
Q ss_pred eeCC-eeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECC
Q 003840 636 FKGG-TAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVG 708 (792)
Q Consensus 636 ~~~~-~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d~I~IwDl~ 708 (792)
|... ...+......+++++|+.+|.|++||--.......+.+...+|..|..+.+|++|++.+...+.+.++.
T Consensus 427 y~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~tyLlLi~t~ 500 (644)
T KOG2395|consen 427 YSTKNNFSCFATTESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCKTYLLLIDTL 500 (644)
T ss_pred cccccccceeeecCCceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEecccEEEEEEEe
Confidence 1111 222333445689999999999999998444444556778889999999999999998888877777653
No 389
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.13 E-value=0.0059 Score=69.81 Aligned_cols=153 Identities=9% Similarity=0.090 Sum_probs=100.5
Q ss_pred CCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCee
Q 003840 553 HSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC 632 (792)
Q Consensus 553 h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~ 632 (792)
+...|.--+++..+++|+.|+.-|.|++|+-..+........+..+.+..++++++ .+++|.|+..|.|.++-+..+..
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~-e~lvAagt~~g~V~v~ql~~~~p 110 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSV-EYLVAAGTASGRVSVFQLNKELP 110 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecch-hHhhhhhcCCceEEeehhhccCC
Confidence 33445555666788899999999999999987643333334344455566666766 56888899999999998876321
Q ss_pred E---------EEeeCCeeEEEEecCCCEEEEEEcCCeEEEEECCCC----eEEEEecCCCCCeEEEEEcCCCCEEEEEeC
Q 003840 633 T---------RVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQ----ACRLSLQGHTKPIDSVCWDPSGELLASVSE 699 (792)
Q Consensus 633 ~---------~~~~~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~----~~~~~l~~h~~~V~sv~~spdg~~Las~s~ 699 (792)
. +..+..+++++|++++.++++|...|.|.+..+... .....+....+.|.-+.+. ++.+|++..
T Consensus 111 ~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~-q~~LLVStl- 188 (726)
T KOG3621|consen 111 RDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL-QSYLLVSTL- 188 (726)
T ss_pred CcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc-cceehHhhh-
Confidence 1 123456889999999999999999999999888772 1122233345666666553 233333332
Q ss_pred CeEEEEECC
Q 003840 700 DSVRVWTVG 708 (792)
Q Consensus 700 d~I~IwDl~ 708 (792)
-...+++.+
T Consensus 189 ~r~~Lc~tE 197 (726)
T KOG3621|consen 189 TRCILCQTE 197 (726)
T ss_pred hhhheeecc
Confidence 233344544
No 390
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.13 E-value=0.0012 Score=45.46 Aligned_cols=38 Identities=32% Similarity=0.543 Sum_probs=34.2
Q ss_pred eeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 003840 503 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWH 540 (792)
Q Consensus 503 ~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWd 540 (792)
+....+..|...|.+++|++++.++++++.|+.|++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 35667788999999999999999999999999999996
No 391
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.12 E-value=0.016 Score=51.93 Aligned_cols=101 Identities=20% Similarity=0.232 Sum_probs=67.3
Q ss_pred eEEEEEcC---CC-CEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcee
Q 003840 515 VICCHFSS---DG-KLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSL 590 (792)
Q Consensus 515 V~~lafsp---dg-~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i 590 (792)
|+++++.. || +.|++|+.|..|+||+-+ +.+..+.. .+.|++++-... ..|+.+-.+|+|-+|+-... +
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~R---l 74 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDRSQR---L 74 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeCcce---e
Confidence 66666654 33 589999999999999855 45555553 456777777665 57999999999999987542 2
Q ss_pred EEecccCCCeEEEEEcC---CCCeEEEEEeCCCcEE
Q 003840 591 RTFMGHSASVMSLDFHP---NKDDLICSCDGDGEIR 623 (792)
Q Consensus 591 ~~~~~h~~~V~sl~fsp---d~~~ll~sgs~Dg~I~ 623 (792)
...+ .+..+.++++.. +|..-|++|-.+|.|-
T Consensus 75 WRiK-SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 75 WRIK-SKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eeec-cCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 2222 223366665543 3444566777777764
No 392
>PRK13684 Ycf48-like protein; Provisional
Probab=97.09 E-value=0.52 Score=51.75 Aligned_cols=267 Identities=10% Similarity=0.066 Sum_probs=131.9
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEEC-CCCceeEEec----cCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCC
Q 003840 512 TSKVICCHFSSDGKLLATGGHDKKAVLWHT-DTLKSKTNLE----EHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP 586 (792)
Q Consensus 512 ~~~V~~lafspdg~~Lasgs~Dg~I~vWdl-~t~~~~~~l~----~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~ 586 (792)
...+++|+|..+.+-+|+|. +|.| |.. +.|+.-.... .....+.+|.|..+ ..+++ +..|. ||..++.
T Consensus 45 ~~~l~~v~F~d~~~g~avG~-~G~i--l~T~DgG~tW~~~~~~~~~~~~~l~~v~~~~~-~~~~~-G~~g~--i~~S~Dg 117 (334)
T PRK13684 45 EANLLDIAFTDPNHGWLVGS-NRTL--LETNDGGETWEERSLDLPEENFRLISISFKGD-EGWIV-GQPSL--LLHTTDG 117 (334)
T ss_pred CCceEEEEEeCCCcEEEEEC-CCEE--EEEcCCCCCceECccCCcccccceeeeEEcCC-cEEEe-CCCce--EEEECCC
Confidence 55799999986666666664 5543 333 2222222111 12344778888754 33444 44553 3333333
Q ss_pred CceeEEec---ccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEE----eeCCeeEEEEecCCCEEEEEEcCC
Q 003840 587 GYSLRTFM---GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV----FKGGTAQMRFQPHLGRYLAAAAEN 659 (792)
Q Consensus 587 ~~~i~~~~---~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~----~~~~~~~v~~sp~~~~lla~s~dg 659 (792)
+.....+. ........+.....+ .++++ +..|.|..=+ +.++.-.. ..+....+.+.+++ .+++++..|
T Consensus 118 G~tW~~~~~~~~~~~~~~~i~~~~~~-~~~~~-g~~G~i~~S~-DgG~tW~~~~~~~~g~~~~i~~~~~g-~~v~~g~~G 193 (334)
T PRK13684 118 GKNWTRIPLSEKLPGSPYLITALGPG-TAEMA-TNVGAIYRTT-DGGKNWEALVEDAAGVVRNLRRSPDG-KYVAVSSRG 193 (334)
T ss_pred CCCCeEccCCcCCCCCceEEEEECCC-cceee-eccceEEEEC-CCCCCceeCcCCCcceEEEEEECCCC-eEEEEeCCc
Confidence 33333221 111122222222222 22323 3344333211 12221111 12345567777764 555666666
Q ss_pred eEEEE-ECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEe-ecCCCceEEEEEeCCCCE
Q 003840 660 VVSIL-DAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHEL-SCNGNKFHSCVFHPTYPS 737 (792)
Q Consensus 660 ~I~i~-D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d~I~IwDl~s~~~~~~i~~~-~~~~~~i~si~fspdg~~ 737 (792)
.+..- |.....-......-...++++.+.+++..++++..+.+++=+...+.....+..- ......+..+.+.+++.
T Consensus 194 ~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~- 272 (334)
T PRK13684 194 NFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLARGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGE- 272 (334)
T ss_pred eEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEecCCEEEEccCCCCCccccccCCccccccceeeEEEcCCCC-
Confidence 65543 2221111112223446789999999999887776655432233444333322111 11224577888998776
Q ss_pred EEEEEcCCeEEEEECCCCcEEEEc----ccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003840 738 LLVIGCYQSLELWNMSENKTMTLT----AHEGLIAALAVSTETGYVASASHDKFVKLWK 792 (792)
Q Consensus 738 L~sgs~dg~I~IwDl~~~~~~~~~----~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd 792 (792)
+++++.+|.|. +....++..... .-....+.+.|..+++.++ .+..|.|..|+
T Consensus 273 ~~~~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~G~il~~~ 329 (334)
T PRK13684 273 IWAGGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-LGQRGVLLRYV 329 (334)
T ss_pred EEEEcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-ECCCceEEEec
Confidence 45555667555 345555543221 2223577888877776665 55788887664
No 393
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=97.06 E-value=0.36 Score=51.94 Aligned_cols=267 Identities=13% Similarity=0.112 Sum_probs=119.7
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEECC-CCceeEEec--cC---CCCEEEEEECCCCCeEEEEeCCCcEEEEeCCC
Q 003840 512 TSKVICCHFSSDGKLLATGGHDKKAVLWHTD-TLKSKTNLE--EH---SSLITDVRFSPSMPRLATSSFDKTVRVWDADN 585 (792)
Q Consensus 512 ~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~-t~~~~~~l~--~h---~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s 585 (792)
...+.+|+|..+..-+|+|. .+.| +... .|+.-.... .. .....+|.|..+ ..++ ++..+ +.+...+
T Consensus 16 ~~~l~dV~F~d~~~G~~VG~-~g~i--l~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~-~g~i-vG~~g-~ll~T~D- 88 (302)
T PF14870_consen 16 DKPLLDVAFVDPNHGWAVGA-YGTI--LKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGN-EGWI-VGEPG-LLLHTTD- 88 (302)
T ss_dssp SS-EEEEEESSSS-EEEEET-TTEE--EEESSTTSS-EE-----S-----EEEEEEEETT-EEEE-EEETT-EEEEESS-
T ss_pred CCceEEEEEecCCEEEEEec-CCEE--EEECCCCccccccccCCCccceeeEEEEEecCC-ceEE-EcCCc-eEEEecC-
Confidence 44789999996666666654 5543 3333 232222111 11 234677888643 3444 44455 3333333
Q ss_pred CCceeEEec---ccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCee-EEEe---eCCeeEEEEecCCCEEEEEEcC
Q 003840 586 PGYSLRTFM---GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC-TRVF---KGGTAQMRFQPHLGRYLAAAAE 658 (792)
Q Consensus 586 ~~~~i~~~~---~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~-~~~~---~~~~~~v~~sp~~~~lla~s~d 658 (792)
.+..-..+. ...+....|....++ ..+++ +..|.|+. ..+.++. .... .+.+..+..++++.+++++...
T Consensus 89 gG~tW~~v~l~~~lpgs~~~i~~l~~~-~~~l~-~~~G~iy~-T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G 165 (302)
T PF14870_consen 89 GGKTWERVPLSSKLPGSPFGITALGDG-SAELA-GDRGAIYR-TTDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRG 165 (302)
T ss_dssp TTSS-EE----TT-SS-EEEEEEEETT-EEEEE-ETT--EEE-ESSTTSSEEEEE-S----EEEEEE-TTS-EEEEETTS
T ss_pred CCCCcEEeecCCCCCCCeeEEEEcCCC-cEEEE-cCCCcEEE-eCCCCCCeeEcccCCcceeEeEEECCCCcEEEEECcc
Confidence 344333322 122334444444443 33323 33444332 1222221 1111 2345556667777666555555
Q ss_pred CeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECC-CCCCc-ceEEEeecCCCceEEEEEeCCCC
Q 003840 659 NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVG-SGSEG-ECVHELSCNGNKFHSCVFHPTYP 736 (792)
Q Consensus 659 g~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d~I~IwDl~-s~~~~-~~i~~~~~~~~~i~si~fspdg~ 736 (792)
..+.-||.-...-...-......|.++.|.+++.+.+.+..+.|++=+.. ..+.. +.+..+......+..++|.++..
T Consensus 166 ~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~ 245 (302)
T PF14870_consen 166 NFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLARGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNE 245 (302)
T ss_dssp SEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-
T ss_pred cEEEEecCCCccceEEccCccceehhceecCCCCEEEEeCCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCCC
Confidence 55667776543222222334578999999999888776644477776621 11110 11111222344588999998877
Q ss_pred EEEEEEcCCeEEEEECCCCcEEEEc----ccCCCeEEEEEeCCCCEEEEEeCCCcEEEe
Q 003840 737 SLLVIGCYQSLELWNMSENKTMTLT----AHEGLIAALAVSTETGYVASASHDKFVKLW 791 (792)
Q Consensus 737 ~L~sgs~dg~I~IwDl~~~~~~~~~----~h~~~V~sl~fspdg~~LaSgs~DG~I~IW 791 (792)
..++ +..|.| +...+.++.-... .-...++.|.|..+.+-+| .+.||.|.-|
T Consensus 246 ~wa~-gg~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~-lG~~G~ll~~ 301 (302)
T PF14870_consen 246 IWAV-GGSGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFV-LGQDGVLLRY 301 (302)
T ss_dssp EEEE-ESTT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEE-E-STTEEEEE
T ss_pred EEEE-eCCccE-EEeCCCCccceECccccCCCCceEEEEEcCCCceEE-ECCCcEEEEe
Confidence 5554 444544 3456666655322 2345688888876655554 4689988766
No 394
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=97.05 E-value=0.54 Score=49.18 Aligned_cols=252 Identities=12% Similarity=0.042 Sum_probs=140.4
Q ss_pred CCCCcceeccCCcceeeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCc---eeEEeccCCCCEEEEEECC
Q 003840 488 DAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK---SKTNLEEHSSLITDVRFSP 564 (792)
Q Consensus 488 d~~~~~~d~~~~~~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~---~~~~l~~h~~~V~~i~fsp 564 (792)
+.+.++.|+....+-.++..+... +--.|+.. .|+++.++..|.-+.++|+.+.. ....+......-+.++.+
T Consensus 105 ssGL~IvDIS~P~sP~~~~~lnt~-gyaygv~v--sGn~aYVadlddgfLivdvsdpssP~lagrya~~~~d~~~v~IS- 180 (370)
T COG5276 105 SSGLRIVDISTPDSPTLIGFLNTD-GYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSSPQLAGRYALPGGDTHDVAIS- 180 (370)
T ss_pred CCceEEEeccCCCCcceeccccCC-ceEEEEEe--cCCEEEEeeccCcEEEEECCCCCCceeeeeeccCCCCceeEEEe-
Confidence 456677888877666666665542 33344444 57788888867677788887543 334444445555666665
Q ss_pred CCCeEEEEeCCCcEEEEeCCCCCceeEEecccCC-CeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeC----C
Q 003840 565 SMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSA-SVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG----G 639 (792)
Q Consensus 565 dg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~-~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~----~ 639 (792)
|++-+.+..|+-+.|-|+.++..++..-.-..+ .+.++..+++.. ++ ...+--+.+-|....+....+.. .
T Consensus 181 -Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~-y~--vvy~egvlivd~s~~ssp~~~gsyet~~ 256 (370)
T COG5276 181 -GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRA-YL--VVYDEGVLIVDVSGPSSPTVFGSYETSN 256 (370)
T ss_pred -cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCee-EE--EEcccceEEEecCCCCCceEeeccccCC
Confidence 668888889999999999986655443332233 677887776532 22 23355577778776664443321 1
Q ss_pred eeEE-EEecCCCEEEEEEcCCeEEEEECCCCeEEE---EecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcce
Q 003840 640 TAQM-RFQPHLGRYLAAAAENVVSILDAETQACRL---SLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGEC 715 (792)
Q Consensus 640 ~~~v-~~sp~~~~lla~s~dg~I~i~D~~t~~~~~---~l~~h~~~V~sv~~spdg~~Las~s~d~I~IwDl~s~~~~~~ 715 (792)
..++ .+.-.+++..++..+..+-+.|..+....+ .+......-..+.. .+.++..+..+...+.|....+ .
T Consensus 257 p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~spfl~ss~~t~g~~a~gi~a--y~~y~yiadkn~g~vV~~s~~s---~ 331 (370)
T COG5276 257 PVSISTVPVSGEYAYVADGAKGLPIIDISNPPSPFLSSSLDTAGYQAAGIRA--YGNYNYIADKNTGAVVDASPPS---M 331 (370)
T ss_pred cccccceecccceeeeeccccCceeEeccCCCCCchhccccCCCccccceEE--ecCeeEeccCCceEEEeCCChh---h
Confidence 1111 344455666666666666666765542111 11111111122221 2444444444445555554321 1
Q ss_pred EEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 003840 716 VHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNM 752 (792)
Q Consensus 716 i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl 752 (792)
.....+....+.++..+-+.+.+.+...++.+.||+.
T Consensus 332 m~~~~g~~ti~~s~~v~~~~q~~y~~d~~~gl~i~~~ 368 (370)
T COG5276 332 MDKRPGRPTIGQSCDVSVDTQIIYSTDYNGGLSIIEY 368 (370)
T ss_pred cccccCcceEeeecceEEEeeEEEEeecCCCEEEEEe
Confidence 1111122223445555555667778888888888875
No 395
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.03 E-value=0.03 Score=65.88 Aligned_cols=217 Identities=14% Similarity=0.075 Sum_probs=114.6
Q ss_pred CCCeEEEEeCCC------cEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCC------CcEEEEEcCCCee
Q 003840 565 SMPRLATSSFDK------TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD------GEIRYWSINNGSC 632 (792)
Q Consensus 565 dg~~Lasgs~Dg------~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~D------g~I~iwdl~~~~~ 632 (792)
.+.++++|+.++ .|..||..++......-......-.++++.. +.++++|+.| .++..||..+...
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~--~~lYv~GG~~~~~~~l~~ve~YD~~~~~W 361 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLN--GKLYVVGGYDSGSDRLSSVERYDPRTNQW 361 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEEC--CEEEEEccccCCCcccceEEEecCCCCce
Confidence 345667777763 5778888874222211112333344555553 3678889888 3577888887774
Q ss_pred EEEe--eCCeeEEEEec-CCCEEEEEEcCC-----eEEEEECCCCeEEEEecCCCCCeEEEE-EcCCCCEEEEEeCC---
Q 003840 633 TRVF--KGGTAQMRFQP-HLGRYLAAAAEN-----VVSILDAETQACRLSLQGHTKPIDSVC-WDPSGELLASVSED--- 700 (792)
Q Consensus 633 ~~~~--~~~~~~v~~sp-~~~~lla~s~dg-----~I~i~D~~t~~~~~~l~~h~~~V~sv~-~spdg~~Las~s~d--- 700 (792)
...- ...-..+.... ++..+++|+.|| .|..||.++.+-...-.-.. ...... ..-+|++.++|+.+
T Consensus 362 ~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~-~r~~~gv~~~~g~iYi~GG~~~~~ 440 (571)
T KOG4441|consen 362 TPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLT-RRSGHGVAVLGGKLYIIGGGDGSS 440 (571)
T ss_pred eccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCc-ceeeeEEEEECCEEEEEcCcCCCc
Confidence 4421 12222222222 344555666665 57888887754322111111 111111 22357766666633
Q ss_pred ----eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCC-----eEEEEECCCCcEEEEcccCCCeEEEE
Q 003840 701 ----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ-----SLELWNMSENKTMTLTAHEGLIAALA 771 (792)
Q Consensus 701 ----~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg-----~I~IwDl~~~~~~~~~~h~~~V~sl~ 771 (792)
.+..||..+. .+..+..+........ +-.-++...++||.|+ +|..||..+.+...+..-......+.
T Consensus 441 ~~l~sve~YDP~t~-~W~~~~~M~~~R~~~g--~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g 517 (571)
T KOG4441|consen 441 NCLNSVECYDPETN-TWTLIAPMNTRRSGFG--VAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVG 517 (571)
T ss_pred cccceEEEEcCCCC-ceeecCCcccccccce--EEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCcccccccc
Confidence 4778887764 2222222222222222 2223566677777665 58889999988775543222222222
Q ss_pred E-eCCCCEEEEEeCCCc
Q 003840 772 V-STETGYVASASHDKF 787 (792)
Q Consensus 772 f-spdg~~LaSgs~DG~ 787 (792)
. .-++...++|+.||.
T Consensus 518 ~~~~~~~ly~vGG~~~~ 534 (571)
T KOG4441|consen 518 VVVLGGKLYAVGGFDGN 534 (571)
T ss_pred EEEECCEEEEEecccCc
Confidence 1 225667778888765
No 396
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=97.00 E-value=0.2 Score=52.71 Aligned_cols=189 Identities=13% Similarity=0.103 Sum_probs=103.7
Q ss_pred CeEEEEEcCCCCeEEEEEeCC--CcEEEEEcCCCeeEEEeeCCeeEEEEecCCCEEEEEEcCCeEEEE-ECCCCeE-EEE
Q 003840 599 SVMSLDFHPNKDDLICSCDGD--GEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSIL-DAETQAC-RLS 674 (792)
Q Consensus 599 ~V~sl~fspd~~~ll~sgs~D--g~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~lla~s~dg~I~i~-D~~t~~~-~~~ 674 (792)
.+.+.++++++..+.+....+ ..++++...................|.+++...++...+....++ +...+.. ...
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~ 104 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPVE 104 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccCCccccccccCCCCEEEEEcCCCceEEEEecCCCcceeEE
Confidence 688999999998877766333 445555443222222222355667899995555555555665655 3333322 111
Q ss_pred ec--CCCCCeEEEEEcCCCCEEEEEe----CCeEEEEECCCCCCc------ceEEEeecCCCceEEEEEeCCCCEEEEEE
Q 003840 675 LQ--GHTKPIDSVCWDPSGELLASVS----EDSVRVWTVGSGSEG------ECVHELSCNGNKFHSCVFHPTYPSLLVIG 742 (792)
Q Consensus 675 l~--~h~~~V~sv~~spdg~~Las~s----~d~I~IwDl~s~~~~------~~i~~~~~~~~~i~si~fspdg~~L~sgs 742 (792)
+. .....|..+.++|||..++... ...|.|--+...... ..+.........+..+.|.+++.+++.+.
T Consensus 105 v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~ 184 (253)
T PF10647_consen 105 VDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGR 184 (253)
T ss_pred ecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEEEeC
Confidence 21 1122899999999999888766 336776655432222 12222223356789999999998777766
Q ss_pred cCCe-EEE-EECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEeCCCcE
Q 003840 743 CYQS-LEL-WNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFV 788 (792)
Q Consensus 743 ~dg~-I~I-wDl~~~~~~~~~~h~~~V~sl~fspdg~~LaSgs~DG~I 788 (792)
..+. +.. +....+....+..-...+..++...+...++.. +++.|
T Consensus 185 ~~~~~~~~~v~~dG~~~~~l~~~~~~~~v~a~~~~~~~~~~t-~~~~~ 231 (253)
T PF10647_consen 185 SAGGPVVRLVSVDGGPSTPLPSVNLGVPVVAVAASPSTVYVT-DDGGV 231 (253)
T ss_pred CCCCceeEEEEccCCcccccCCCCCCcceEEeeCCCcEEEEE-CCCcE
Confidence 5542 333 444444333332223333334444444444433 34433
No 397
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.99 E-value=0.0019 Score=44.35 Aligned_cols=39 Identities=36% Similarity=0.537 Sum_probs=34.3
Q ss_pred CceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEe
Q 003840 544 LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 582 (792)
Q Consensus 544 ~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWd 582 (792)
++.+..+..|...|.++.|.+++.++++++.|+.|++||
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 345666778889999999999999999999999999996
No 398
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.97 E-value=0.084 Score=57.83 Aligned_cols=120 Identities=16% Similarity=0.178 Sum_probs=87.7
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCce----eEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCC
Q 003840 512 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKS----KTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG 587 (792)
Q Consensus 512 ~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~----~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~ 587 (792)
.++|.++.||+|.+.||+--.|++|.+++....+. ..+.+.....|...+|+.+ .-+|.-...| +-+|-+....
T Consensus 66 ~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pek 143 (657)
T KOG2377|consen 66 KGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEK 143 (657)
T ss_pred CCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchhh
Confidence 56899999999999999999999999999843222 2233345566899999876 5666666666 8888888767
Q ss_pred ceeEEecccCCCeEEEEEcCCCCeEEEEEe-CCCcEEEEEcCCCeeE
Q 003840 588 YSLRTFMGHSASVMSLDFHPNKDDLICSCD-GDGEIRYWSINNGSCT 633 (792)
Q Consensus 588 ~~i~~~~~h~~~V~sl~fspd~~~ll~sgs-~Dg~I~iwdl~~~~~~ 633 (792)
..++..+.|...|....|+++..-++.+.+ ..+++.=+-++++...
T Consensus 144 rslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~~v~ 190 (657)
T KOG2377|consen 144 RSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAGTMS 190 (657)
T ss_pred hhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeeceee
Confidence 778888899999999999998765554444 3444444555544433
No 399
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=96.88 E-value=0.59 Score=52.02 Aligned_cols=102 Identities=19% Similarity=0.209 Sum_probs=59.6
Q ss_pred CCeEEEEEcCCCCEEEEEe-----------CCC-eEEEEECCC--Cc--eeEEeccCCCCEEEEEECCCCCeEEEEeCCC
Q 003840 513 SKVICCHFSSDGKLLATGG-----------HDK-KAVLWHTDT--LK--SKTNLEEHSSLITDVRFSPSMPRLATSSFDK 576 (792)
Q Consensus 513 ~~V~~lafspdg~~Lasgs-----------~Dg-~I~vWdl~t--~~--~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg 576 (792)
.....|+|.++|+++++-. ..+ .|.+++-.+ ++ ....+.......+.|+|.+++ |++++...
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~~ 91 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPPD 91 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCCe
Confidence 4578899999999777653 223 777776542 33 234444445567889999888 44445554
Q ss_pred cEEEEeCCCCC----c--ee-EEecc----cCCCeEEEEEcCCCCeEEEEE
Q 003840 577 TVRVWDADNPG----Y--SL-RTFMG----HSASVMSLDFHPNKDDLICSC 616 (792)
Q Consensus 577 ~V~IWdl~s~~----~--~i-~~~~~----h~~~V~sl~fspd~~~ll~sg 616 (792)
.+++.|.+..+ . .+ ..+.. +......++|.|||..++..+
T Consensus 92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G 142 (367)
T TIGR02604 92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG 142 (367)
T ss_pred EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence 33444554321 1 11 12222 134477899999986555444
No 400
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.87 E-value=0.24 Score=60.03 Aligned_cols=112 Identities=19% Similarity=0.209 Sum_probs=69.1
Q ss_pred CCEEEEEeCCCeEEEEECCCCceeEEeccCCC--------CEEEEEECC----------------CCCeEEEEeCCCcEE
Q 003840 524 GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSS--------LITDVRFSP----------------SMPRLATSSFDKTVR 579 (792)
Q Consensus 524 g~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~--------~V~~i~fsp----------------dg~~Lasgs~Dg~V~ 579 (792)
+..|++++.++.|+-.|..+|+.+-++..... .+..+.+.. ++..|+.++.|+.|.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 44777777888888899998888877653221 122233321 344788899999999
Q ss_pred EEeCCCCCceeEEecccCCCeE-------------EEEEcC--CCCeEEEEEeC----------CCcEEEEEcCCCeeEE
Q 003840 580 VWDADNPGYSLRTFMGHSASVM-------------SLDFHP--NKDDLICSCDG----------DGEIRYWSINNGSCTR 634 (792)
Q Consensus 580 IWdl~s~~~~i~~~~~h~~~V~-------------sl~fsp--d~~~ll~sgs~----------Dg~I~iwdl~~~~~~~ 634 (792)
-.|.++ ++.+..+. ..+.|. .+.-.| .++ ++++|+. +|.|+-+|+++|+.+.
T Consensus 274 ALDA~T-Gk~~W~fg-~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g-~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W 350 (764)
T TIGR03074 274 ALDADT-GKLCEDFG-NNGTVDLTAGMGTTPPGYYYPTSPPLVAGT-TVVIGGRVADNYSTDEPSGVIRAFDVNTGALVW 350 (764)
T ss_pred EEECCC-CCEEEEec-CCCceeeecccCcCCCcccccccCCEEECC-EEEEEecccccccccCCCcEEEEEECCCCcEee
Confidence 999988 55554432 111110 000011 023 3334432 6889999999999998
Q ss_pred EeeC
Q 003840 635 VFKG 638 (792)
Q Consensus 635 ~~~~ 638 (792)
.+..
T Consensus 351 ~~~~ 354 (764)
T TIGR03074 351 AWDP 354 (764)
T ss_pred EEec
Confidence 7763
No 401
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.86 E-value=0.92 Score=48.82 Aligned_cols=222 Identities=12% Similarity=0.106 Sum_probs=104.7
Q ss_pred CCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEeccc-----CCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcC
Q 003840 554 SSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGH-----SASVMSLDFHPNKDDLICSCDGDGEIRYWSIN 628 (792)
Q Consensus 554 ~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h-----~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~ 628 (792)
...+.+|.|..+..-+++|. .+. |+...++++.-...... .....+|.|.. ...+++| ..+ +.+...+
T Consensus 16 ~~~l~dV~F~d~~~G~~VG~-~g~--il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~--~~g~ivG-~~g-~ll~T~D 88 (302)
T PF14870_consen 16 DKPLLDVAFVDPNHGWAVGA-YGT--ILKTTDGGKTWQPVSLDLDNPFDYHLNSISFDG--NEGWIVG-EPG-LLLHTTD 88 (302)
T ss_dssp SS-EEEEEESSSS-EEEEET-TTE--EEEESSTTSS-EE-----S-----EEEEEEEET--TEEEEEE-ETT-EEEEESS
T ss_pred CCceEEEEEecCCEEEEEec-CCE--EEEECCCCccccccccCCCccceeeEEEEEecC--CceEEEc-CCc-eEEEecC
Confidence 45789999996555566654 453 44444444332222111 12366777764 3445444 344 4444444
Q ss_pred CCeeEEEe------eCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-e
Q 003840 629 NGSCTRVF------KGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-S 701 (792)
Q Consensus 629 ~~~~~~~~------~~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~ 701 (792)
.++.-..+ .+....+....+ ...++++..|.|+.-.-....-......-...+..+..++||++++++..+ .
T Consensus 89 gG~tW~~v~l~~~lpgs~~~i~~l~~-~~~~l~~~~G~iy~T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~ 167 (302)
T PF14870_consen 89 GGKTWERVPLSSKLPGSPFGITALGD-GSAELAGDRGAIYRTTDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRGNF 167 (302)
T ss_dssp TTSS-EE----TT-SS-EEEEEEEET-TEEEEEETT--EEEESSTTSSEEEEE-S----EEEEEE-TTS-EEEEETTSSE
T ss_pred CCCCcEEeecCCCCCCCeeEEEEcCC-CcEEEEcCCCcEEEeCCCCCCeeEcccCCcceeEeEEECCCCcEEEEECcccE
Confidence 44322221 122223333333 344444555544432222122223334455678889999999999999888 5
Q ss_pred EEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC-CCCcEEEE--c---ccCCCeEEEEEeCC
Q 003840 702 VRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNM-SENKTMTL--T---AHEGLIAALAVSTE 775 (792)
Q Consensus 702 I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl-~~~~~~~~--~---~h~~~V~sl~fspd 775 (792)
+.-||-... .... ........|..+.|.|++...+ ....|.|++=+. ...+.... . .....+.+++|.++
T Consensus 168 ~~s~~~G~~-~w~~--~~r~~~~riq~~gf~~~~~lw~-~~~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~ 243 (302)
T PF14870_consen 168 YSSWDPGQT-TWQP--HNRNSSRRIQSMGFSPDGNLWM-LARGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPP 243 (302)
T ss_dssp EEEE-TT-S-S-EE--EE--SSS-EEEEEE-TTS-EEE-EETTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSS
T ss_pred EEEecCCCc-cceE--EccCccceehhceecCCCCEEE-EeCCcEEEEccCCCCccccccccCCcccCceeeEEEEecCC
Confidence 667875321 1122 2222457899999999987555 457888888872 22222211 1 12234889999998
Q ss_pred CCEEEEEeCCCcE
Q 003840 776 TGYVASASHDKFV 788 (792)
Q Consensus 776 g~~LaSgs~DG~I 788 (792)
+...|+|+ .|.|
T Consensus 244 ~~~wa~gg-~G~l 255 (302)
T PF14870_consen 244 NEIWAVGG-SGTL 255 (302)
T ss_dssp S-EEEEES-TT-E
T ss_pred CCEEEEeC-CccE
Confidence 88877665 4444
No 402
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.84 E-value=0.014 Score=69.65 Aligned_cols=101 Identities=20% Similarity=0.277 Sum_probs=72.8
Q ss_pred CCCEEEEEeCCCeEEEEECCCC-ceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEecccCCCeE
Q 003840 523 DGKLLATGGHDKKAVLWHTDTL-KSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVM 601 (792)
Q Consensus 523 dg~~Lasgs~Dg~I~vWdl~t~-~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~ 601 (792)
-+..++.|+..|.|..+|+... .....=+.-.++|++++|+.+|+.++.|-.+|.|.+||+.. +..++.+..|..+++
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~-~k~l~~i~e~~ap~t 176 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHR-AKILKVITEHGAPVT 176 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccC-CcceeeeeecCCccc
Confidence 3447888998999988887653 22122223467899999999999999999999999999997 677777777776665
Q ss_pred EEEE---cCCCCeEEEEEeCCCcEEEEEc
Q 003840 602 SLDF---HPNKDDLICSCDGDGEIRYWSI 627 (792)
Q Consensus 602 sl~f---spd~~~ll~sgs~Dg~I~iwdl 627 (792)
++-+ ..++. .+++++..|. +|.+
T Consensus 177 ~vi~v~~t~~nS-~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 177 GVIFVGRTSQNS-KLLTSDTGGS--FWKL 202 (1206)
T ss_pred eEEEEEEeCCCc-EEEEccCCCc--eEEE
Confidence 5544 33333 5557766665 5554
No 403
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.84 E-value=0.0014 Score=65.60 Aligned_cols=139 Identities=14% Similarity=0.048 Sum_probs=82.4
Q ss_pred eEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeE-EEee---CCeeE-
Q 003840 568 RLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT-RVFK---GGTAQ- 642 (792)
Q Consensus 568 ~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~-~~~~---~~~~~- 642 (792)
.|..-+.||.|+-++++......+....+...-.-+.+ ..-+++|+.+|.|++|+.+..... ..+. ..+.+
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~~~v~~~----~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~ 107 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKESCRSERFIDEGQRVVTA----SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLG 107 (238)
T ss_pred hhccccCCcccccchhhhhhhhhhhhhhhhcceeeccc----CceEEeecccceEEEecCCccchHHHhhhcccccceec
Confidence 34555678888888776533222222222222111122 223558888999999988732211 1111 11111
Q ss_pred EEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCC-CCeEEEEEcCCCCEEEEE--eCC-eEEEEECCCC
Q 003840 643 MRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHT-KPIDSVCWDPSGELLASV--SED-SVRVWTVGSG 710 (792)
Q Consensus 643 v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~-~~V~sv~~spdg~~Las~--s~d-~I~IwDl~s~ 710 (792)
+....++.+.++++.+|.|+.|++.-.+.+.....|. .++..+..+..+++|+.. +.| .++.|++...
T Consensus 108 Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~ 179 (238)
T KOG2444|consen 108 IPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKI 179 (238)
T ss_pred cccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhhh
Confidence 2222334467788889999999999888887777777 556666666666777666 666 7777877543
No 404
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.79 E-value=0.32 Score=50.97 Aligned_cols=191 Identities=16% Similarity=0.230 Sum_probs=108.0
Q ss_pred cccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee----CCeeEEEEecCCCEEEEEEcCCeEEEEECCCC
Q 003840 594 MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK----GGTAQMRFQPHLGRYLAAAAENVVSILDAETQ 669 (792)
Q Consensus 594 ~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~----~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~ 669 (792)
.+....|.++.|+|+.+.||++.. ...-.+|=...|..++++. .....+.+..++.+.++--.+..++++.+...
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n-~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTN-KPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred ccccccccceeeCCCcceEEEecC-CCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence 455566999999999888886655 4445555555688887764 23445677766555555555777777766544
Q ss_pred eEE-------EEec--CC-CCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecC-------CCceEEEEE
Q 003840 670 ACR-------LSLQ--GH-TKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCN-------GNKFHSCVF 731 (792)
Q Consensus 670 ~~~-------~~l~--~h-~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~-------~~~i~si~f 731 (792)
..+ ..+. .+ +.....++|++....|+.+-+. -+.||.+......-.++....+ -..+.++.|
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~ 240 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEF 240 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecccccee
Confidence 221 1121 12 5567889999988877777665 4555544322211111111111 123667788
Q ss_pred eCCCCEEEEE-EcCCeEEEEECCCCcEE--EEcccC----C---CeEEEEEeCCCCEEEEEeCCC
Q 003840 732 HPTYPSLLVI-GCYQSLELWNMSENKTM--TLTAHE----G---LIAALAVSTETGYVASASHDK 786 (792)
Q Consensus 732 spdg~~L~sg-s~dg~I~IwDl~~~~~~--~~~~h~----~---~V~sl~fspdg~~LaSgs~DG 786 (792)
++....|++- ..++.|.-.|....-.- .+.+.. . ....++..++|.+.+ .|+-+
T Consensus 241 ~~~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYI-vSEPn 304 (316)
T COG3204 241 NAITNSLLVLSDESRRLLEVDLSGEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYI-VSEPN 304 (316)
T ss_pred cCCCCcEEEEecCCceEEEEecCCCeeeeEEeccCCCCCcccCCCcceeEECCCCCEEE-EecCC
Confidence 8755555444 45566777777655322 222211 1 234677777776444 34433
No 405
>PHA02713 hypothetical protein; Provisional
Probab=96.79 E-value=0.097 Score=61.60 Aligned_cols=175 Identities=6% Similarity=-0.009 Sum_probs=86.9
Q ss_pred CeEEEEEeCC------CcEEEEEcCCCeeEEEe--eCCe-eEEEEecCCCEEEEEEcCC-----eEEEEECCCCeEEE--
Q 003840 610 DDLICSCDGD------GEIRYWSINNGSCTRVF--KGGT-AQMRFQPHLGRYLAAAAEN-----VVSILDAETQACRL-- 673 (792)
Q Consensus 610 ~~ll~sgs~D------g~I~iwdl~~~~~~~~~--~~~~-~~v~~sp~~~~lla~s~dg-----~I~i~D~~t~~~~~-- 673 (792)
+.+++.||.+ ..+..||..+......- .... ......-++..+++|+.++ .+.+||..+.+-..
T Consensus 304 ~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~ 383 (557)
T PHA02713 304 NEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLP 383 (557)
T ss_pred CEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEECC
Confidence 4677777753 34778898877543221 1111 1122233444555566543 58889988764322
Q ss_pred EecCCCCCeEEEEEcCCCCEEEEEeCC------------------------eEEEEECCCCCCcceEEEeecCCCceEEE
Q 003840 674 SLQGHTKPIDSVCWDPSGELLASVSED------------------------SVRVWTVGSGSEGECVHELSCNGNKFHSC 729 (792)
Q Consensus 674 ~l~~h~~~V~sv~~spdg~~Las~s~d------------------------~I~IwDl~s~~~~~~i~~~~~~~~~i~si 729 (792)
.+.........+. -+|++.+.|+.+ .+..||..+. .+..+..+... .....
T Consensus 384 ~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td-~W~~v~~m~~~--r~~~~ 458 (557)
T PHA02713 384 DMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNN-IWETLPNFWTG--TIRPG 458 (557)
T ss_pred CCCcccccccEEE--ECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCC-eEeecCCCCcc--cccCc
Confidence 1111111111222 256766666532 3666776653 12222222111 11222
Q ss_pred EEeCCCCEEEEEEcC------CeEEEEECCC-CcEEEEc---ccCCCeEEEEEeCCCCEEEEEeCCC--cEEEe
Q 003840 730 VFHPTYPSLLVIGCY------QSLELWNMSE-NKTMTLT---AHEGLIAALAVSTETGYVASASHDK--FVKLW 791 (792)
Q Consensus 730 ~fspdg~~L~sgs~d------g~I~IwDl~~-~~~~~~~---~h~~~V~sl~fspdg~~LaSgs~DG--~I~IW 791 (792)
+..-+++..++|+.+ ..|..||..+ ++...+. ........+.+ ++++.++||.|| .+..|
T Consensus 459 ~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~y 530 (557)
T PHA02713 459 VVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYESYMLQDTF 530 (557)
T ss_pred EEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecceeehhhc
Confidence 233355666666654 2478899988 5554222 22222222232 778888999888 44444
No 406
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=96.79 E-value=0.85 Score=48.20 Aligned_cols=196 Identities=15% Similarity=0.136 Sum_probs=115.0
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEECC-------CCceeEEecc-----CCCCEEEEEECCCCC------------eEE
Q 003840 515 VICCHFSSDGKLLATGGHDKKAVLWHTD-------TLKSKTNLEE-----HSSLITDVRFSPSMP------------RLA 570 (792)
Q Consensus 515 V~~lafspdg~~Lasgs~Dg~I~vWdl~-------t~~~~~~l~~-----h~~~V~~i~fspdg~------------~La 570 (792)
-+.|+|+|.+.+-++....+...+||.. ....+.++.. .....+.+.|+.... .++
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi 104 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL 104 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence 5789999999888888788999999986 1123344432 234678888875322 378
Q ss_pred EEeCCCcEEEEeCCCCCc----eeEEecc-cCCCe-EEEEEcC--CCCeEEEEEeCCCcEEEEEcCCCeeEE--EeeCCe
Q 003840 571 TSSFDKTVRVWDADNPGY----SLRTFMG-HSASV-MSLDFHP--NKDDLICSCDGDGEIRYWSINNGSCTR--VFKGGT 640 (792)
Q Consensus 571 sgs~Dg~V~IWdl~s~~~----~i~~~~~-h~~~V-~sl~fsp--d~~~ll~sgs~Dg~I~iwdl~~~~~~~--~~~~~~ 640 (792)
.+++||+|.-|.-.-... .+..+.. ....| +.+++.. .+..|.++--..+.|.+||-.-.+... .|..+.
T Consensus 105 f~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~ 184 (336)
T TIGR03118 105 FVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPA 184 (336)
T ss_pred EEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCCC
Confidence 889999999998543211 1222221 12333 3455543 355666666678999999865443221 121111
Q ss_pred eE----------------EEE---ecCCCEEEEEEcCCeEEEEECCCCeEEEEec--CCCCCeEEEEEcC------CCCE
Q 003840 641 AQ----------------MRF---QPHLGRYLAAAAENVVSILDAETQACRLSLQ--GHTKPIDSVCWDP------SGEL 693 (792)
Q Consensus 641 ~~----------------v~~---sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~--~h~~~V~sv~~sp------dg~~ 693 (792)
.. +.| .++...-+.+..-|.|.+||+.. ..+.++. +.-..-+.|+..| .|.+
T Consensus 185 iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G-~l~~r~as~g~LNaPWG~a~APa~FG~~sg~l 263 (336)
T TIGR03118 185 LPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNG-QLLRRVASSGRLNAPWGLAIAPESFGSLSGAL 263 (336)
T ss_pred CCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCC-cEEEEeccCCcccCCceeeeChhhhCCCCCCe
Confidence 00 111 11222223333457899999864 4444442 2233345666655 5667
Q ss_pred EEEEeCC-eEEEEECCCCC
Q 003840 694 LASVSED-SVRVWTVGSGS 711 (792)
Q Consensus 694 Las~s~d-~I~IwDl~s~~ 711 (792)
|+.--.| +|..||..++.
T Consensus 264 LVGNFGDG~InaFD~~sG~ 282 (336)
T TIGR03118 264 LVGNFGDGTINAYDPQSGA 282 (336)
T ss_pred EEeecCCceeEEecCCCCc
Confidence 7776666 99999998773
No 407
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.79 E-value=0.073 Score=47.82 Aligned_cols=100 Identities=15% Similarity=0.150 Sum_probs=65.9
Q ss_pred eEEEEEcC---CC-CEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCc
Q 003840 682 IDSVCWDP---SG-ELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK 756 (792)
Q Consensus 682 V~sv~~sp---dg-~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~ 756 (792)
|+++++.. +| +.|++|++| .|++|+-. ..+.++.. ...+.+++-... ..|+.+-.+|+|-+|+-....
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~-----e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~Rl 74 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD-----EIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDRSQRL 74 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC-----cEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeCccee
Confidence 55666554 33 478889999 99999854 45555554 345666665555 569999999999999874433
Q ss_pred EEEEcccCCCeEEEEEeC-C--C-CEEEEEeCCCcEEE
Q 003840 757 TMTLTAHEGLIAALAVST-E--T-GYVASASHDKFVKL 790 (792)
Q Consensus 757 ~~~~~~h~~~V~sl~fsp-d--g-~~LaSgs~DG~I~I 790 (792)
... .....++++++.. + | .-|++|-.+|.|-+
T Consensus 75 WRi--KSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 75 WRI--KSKNQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred eee--ccCCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 222 2333466666644 2 2 25888888998754
No 408
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=96.65 E-value=1.6 Score=48.63 Aligned_cols=149 Identities=14% Similarity=0.126 Sum_probs=87.6
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCceeEEeccC--CCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEecccC-C
Q 003840 522 SDGKLLATGGHDKKAVLWHTDTLKSKTNLEEH--SSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHS-A 598 (792)
Q Consensus 522 pdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h--~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~-~ 598 (792)
-|| .++++..+|.|.-+|.++++.+-....- ...+.+-.+..+| .|++++.+|.++.+|.++ +..+..+.... .
T Consensus 67 ~dg-~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G-~i~~g~~~g~~y~ld~~~-G~~~W~~~~~~~~ 143 (370)
T COG1520 67 GDG-TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDG-KIYVGSWDGKLYALDAST-GTLVWSRNVGGSP 143 (370)
T ss_pred eCC-eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCC-eEEEecccceEEEEECCC-CcEEEEEecCCCe
Confidence 344 4555577888888888888765433222 1222222333355 488888999888888875 55555554444 1
Q ss_pred CeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCCe-eE--EEE--ecCCCEEEEEEc--CCeEEEEECCCCeE
Q 003840 599 SVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGT-AQ--MRF--QPHLGRYLAAAA--ENVVSILDAETQAC 671 (792)
Q Consensus 599 ~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~-~~--v~~--sp~~~~lla~s~--dg~I~i~D~~t~~~ 671 (792)
.+..-.+..++ .++.++.++.+...|..+++.+..+.... .. +.. ....+.++++.. ++.+.-+|.+++..
T Consensus 144 ~~~~~~v~~~~--~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~~~~~~~~~a~~~~~G~~ 221 (370)
T COG1520 144 YYASPPVVGDG--TVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGSDGYDGILYALNAEDGTL 221 (370)
T ss_pred EEecCcEEcCc--EEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEecCCCcceEEEEEccCCcE
Confidence 12222222232 34445478999999999888876654322 11 111 123455666655 66788888888877
Q ss_pred EEEe
Q 003840 672 RLSL 675 (792)
Q Consensus 672 ~~~l 675 (792)
+...
T Consensus 222 ~w~~ 225 (370)
T COG1520 222 KWSQ 225 (370)
T ss_pred eeee
Confidence 7664
No 409
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.59 E-value=0.18 Score=52.29 Aligned_cols=169 Identities=18% Similarity=0.189 Sum_probs=107.5
Q ss_pred cCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCCeeEEEEecCCCEEEEEEc--CCeEEEEECCCCeEEEEecCCCCC--
Q 003840 606 HPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAA--ENVVSILDAETQACRLSLQGHTKP-- 681 (792)
Q Consensus 606 spd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~lla~s~--dg~I~i~D~~t~~~~~~l~~h~~~-- 681 (792)
..|+.+.+++.+++|.|..- ..+......+.++|....-++... .-...+||........++...+..
T Consensus 44 ~~dgs~g~a~~~eaGk~v~~--------~~lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHf 115 (366)
T COG3490 44 ARDGSFGAATLSEAGKIVFA--------TALPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHF 115 (366)
T ss_pred ccCCceeEEEEccCCceeee--------eecccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCcee
Confidence 45666666666655544321 112233445777777666554443 335678888777554444322211
Q ss_pred eEEEEEcCCCCEEEEEeCC------eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcC-------C---
Q 003840 682 IDSVCWDPSGELLASVSED------SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY-------Q--- 745 (792)
Q Consensus 682 V~sv~~spdg~~Las~s~d------~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~d-------g--- 745 (792)
.-.-+|++||.+|+..-.| .|-|||.+ .....+.++..++-....+.|.+||+.++++... |
T Consensus 116 yGHGvfs~dG~~LYATEndfd~~rGViGvYd~r--~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~ 193 (366)
T COG3490 116 YGHGVFSPDGRLLYATENDFDPNRGVIGVYDAR--EGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTE 193 (366)
T ss_pred ecccccCCCCcEEEeecCCCCCCCceEEEEecc--cccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccc
Confidence 2234699999999876544 58999998 3456778888898889999999999988887541 1
Q ss_pred --------eEEEEECCCCcEE---EEc--ccCCCeEEEEEeCCCCEEEEEeC
Q 003840 746 --------SLELWNMSENKTM---TLT--AHEGLIAALAVSTETGYVASASH 784 (792)
Q Consensus 746 --------~I~IwDl~~~~~~---~~~--~h~~~V~sl~fspdg~~LaSgs~ 784 (792)
++.+.|..++.++ ++. .+.-.|..++..+||..++.|-.
T Consensus 194 lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy 245 (366)
T COG3490 194 LNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQY 245 (366)
T ss_pred cchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEe
Confidence 3445555555544 222 34567888999999887776543
No 410
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.59 E-value=1.7 Score=48.36 Aligned_cols=218 Identities=10% Similarity=0.038 Sum_probs=101.6
Q ss_pred CCCeEEEEe-CCCcEEEEeCCCCCc---eeEEecc---cC----CCeEEEEEcCCCCeEEEEE--eC----CCcEEEEEc
Q 003840 565 SMPRLATSS-FDKTVRVWDADNPGY---SLRTFMG---HS----ASVMSLDFHPNKDDLICSC--DG----DGEIRYWSI 627 (792)
Q Consensus 565 dg~~Lasgs-~Dg~V~IWdl~s~~~---~i~~~~~---h~----~~V~sl~fspd~~~ll~sg--s~----Dg~I~iwdl 627 (792)
+.++|+..+ ..+.|+|+|+.+... ..+.+.. +. ..-..+-..|+|..+| ++ +. -|.+.++|-
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imI-S~lGd~~G~g~Ggf~llD~ 164 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMI-SALGDADGNGPGGFVLLDG 164 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEE-EEEEETTS-S--EEEEE-T
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEE-EeccCCCCCCCCcEEEEcC
Confidence 455777776 677899999985332 2333331 11 1122233346665444 43 22 256888898
Q ss_pred CCCeeEEEeeCC------eeEEEEecCCCEEEEEEc--------------------CCeEEEEECCCCeEEEEecCCCC-
Q 003840 628 NNGSCTRVFKGG------TAQMRFQPHLGRYLAAAA--------------------ENVVSILDAETQACRLSLQGHTK- 680 (792)
Q Consensus 628 ~~~~~~~~~~~~------~~~v~~sp~~~~lla~s~--------------------dg~I~i~D~~t~~~~~~l~~h~~- 680 (792)
++.+.....+.. ...+.|.|..+.+++... ...+.+||+.+.+.+.++.-...
T Consensus 165 ~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g 244 (461)
T PF05694_consen 165 ETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEG 244 (461)
T ss_dssp TT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTE
T ss_pred ccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCC
Confidence 888877766542 244677888777776542 34799999999999988875432
Q ss_pred -CeEEEEEcC--CCCEEEE-EeCC-eEEEEECCCCCCc--ceEEEeecC-----------------CCceEEEEEeCCCC
Q 003840 681 -PIDSVCWDP--SGELLAS-VSED-SVRVWTVGSGSEG--ECVHELSCN-----------------GNKFHSCVFHPTYP 736 (792)
Q Consensus 681 -~V~sv~~sp--dg~~Las-~s~d-~I~IwDl~s~~~~--~~i~~~~~~-----------------~~~i~si~fspdg~ 736 (792)
....|.|.. +..+=++ +.-. .|..|--...... +.+..+... ..-|+.|.+|.|.+
T Consensus 245 ~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDr 324 (461)
T PF05694_consen 245 QMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDR 324 (461)
T ss_dssp EEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-
T ss_pred CceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCC
Confidence 244566654 4444333 3333 5555443222222 122222111 23478999999999
Q ss_pred EEEEEEc-CCeEEEEECCCCcEEE-----Ecc---------------cCCCeEEEEEeCCCCEEEEEe
Q 003840 737 SLLVIGC-YQSLELWNMSENKTMT-----LTA---------------HEGLIAALAVSTETGYVASAS 783 (792)
Q Consensus 737 ~L~sgs~-dg~I~IwDl~~~~~~~-----~~~---------------h~~~V~sl~fspdg~~LaSgs 783 (792)
+|++.+. .|.|+.||+.....-. ..+ -.+...-|..|-||+.|+..+
T Consensus 325 fLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 325 FLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred EEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence 9998886 5899999998743221 111 112346678888998877654
No 411
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=96.57 E-value=1.9 Score=48.47 Aligned_cols=109 Identities=12% Similarity=0.112 Sum_probs=67.1
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcc--eEEEeec--CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 003840 679 TKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGE--CVHELSC--NGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSE 754 (792)
Q Consensus 679 ~~~V~sv~~spdg~~Las~s~d~I~IwDl~s~~~~~--~i~~~~~--~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~ 754 (792)
...+..+.|.+++.+++++..+.+ +|....+.... .+..... ....+..+.|.+++. +++++..|.|.... ..
T Consensus 280 ~~~l~~v~~~~dg~l~l~g~~G~l-~~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~-~~a~G~~G~v~~s~-D~ 356 (398)
T PLN00033 280 ARRIQNMGWRADGGLWLLTRGGGL-YVSKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKE-AWAAGGSGILLRST-DG 356 (398)
T ss_pred ccceeeeeEcCCCCEEEEeCCceE-EEecCCCCcccccceeecccCCCCcceEEEEEcCCCc-EEEEECCCcEEEeC-CC
Confidence 456889999999998887755543 34433332111 2222222 223588888987776 55666667666553 45
Q ss_pred CcEEEE----cccCCCeEEEEEeCCCCEEEEEeCCCcEEEe
Q 003840 755 NKTMTL----TAHEGLIAALAVSTETGYVASASHDKFVKLW 791 (792)
Q Consensus 755 ~~~~~~----~~h~~~V~sl~fspdg~~LaSgs~DG~I~IW 791 (792)
++.... ..-...++.+.|.++++.+++ +.+|.|.-|
T Consensus 357 G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~-G~~G~il~~ 396 (398)
T PLN00033 357 GKSWKRDKGADNIAANLYSVKFFDDKKGFVL-GNDGVLLRY 396 (398)
T ss_pred CcceeEccccCCCCcceeEEEEcCCCceEEE-eCCcEEEEe
Confidence 554322 233457889999877766665 578888766
No 412
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.46 E-value=0.013 Score=66.38 Aligned_cols=90 Identities=16% Similarity=0.188 Sum_probs=74.6
Q ss_pred CCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceE-EEEEeCCCCEEEEEEcCCeEEEEECCCCcE
Q 003840 680 KPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFH-SCVFHPTYPSLLVIGCYQSLELWNMSENKT 757 (792)
Q Consensus 680 ~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~-si~fspdg~~L~sgs~dg~I~IwDl~~~~~ 757 (792)
..|.-+.|+|.-.+||.+..+ .|.++.++ ...+.++..++..++ +++|.|||+.|++|-.||+|++.|+.++..
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n----~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~ 96 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN----WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGR 96 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec----cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCc
Confidence 457789999999999999988 78888875 266777776666666 999999999999999999999999999987
Q ss_pred EEE--cccCCCeEEEEEe
Q 003840 758 MTL--TAHEGLIAALAVS 773 (792)
Q Consensus 758 ~~~--~~h~~~V~sl~fs 773 (792)
+.- ......|.++.|+
T Consensus 97 l~~~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 97 LVSFLFSVETDISKGIWD 114 (665)
T ss_pred eeccccccccchheeecc
Confidence 733 4556778888886
No 413
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=96.38 E-value=1.2 Score=54.49 Aligned_cols=176 Identities=13% Similarity=0.207 Sum_probs=102.1
Q ss_pred cCCCCEEEEEEC---C--C--CCeEEEEeCCCcEEEEeC------CCCC--------ceeEEecc---cCCCeEEEEEcC
Q 003840 552 EHSSLITDVRFS---P--S--MPRLATSSFDKTVRVWDA------DNPG--------YSLRTFMG---HSASVMSLDFHP 607 (792)
Q Consensus 552 ~h~~~V~~i~fs---p--d--g~~Lasgs~Dg~V~IWdl------~s~~--------~~i~~~~~---h~~~V~sl~fsp 607 (792)
....+|..|+|. . + .++|+ .-....+.|+.. .... .++..+.. ......+++|+|
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~-Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP 155 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLA-VRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP 155 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEE-EEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence 456788888887 2 1 22444 444455666661 1100 12333331 234677899999
Q ss_pred CCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEE
Q 003840 608 NKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCW 687 (792)
Q Consensus 608 d~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~ 687 (792)
....-||+.+..|...|||+......+ .. ...+.....|.| ++|.+.. .....|+|
T Consensus 156 ~~~~q~AiVD~~G~Wsvw~i~~~~~~~---~~----------~~~~~~~~~gsi-~~d~~e~----------s~w~rI~W 211 (765)
T PF10214_consen 156 WDQRQFAIVDEKGNWSVWDIKGRPKRK---SS----------NLRLSRNISGSI-IFDPEEL----------SNWKRILW 211 (765)
T ss_pred CccceEEEEeccCcEEEEEeccccccC---Cc----------ceeeccCCCccc-cCCCccc----------CcceeeEe
Confidence 888889999999999999992211110 00 111111122333 2332211 44567899
Q ss_pred cCCCCEEEEEeCCeEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCC-EEEEEEcCCeEEEEECCC
Q 003840 688 DPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYP-SLLVIGCYQSLELWNMSE 754 (792)
Q Consensus 688 spdg~~Las~s~d~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~-~L~sgs~dg~I~IwDl~~ 754 (792)
..+...|+.++...+.++|+++......+ ........|..+.-+++.. ++++. ....|..+|+..
T Consensus 212 ~~~~~~lLv~~r~~l~~~d~~~~~~~~~l-~~~~~~~~IlDv~~~~~~~~~~FiL-Ts~eiiw~~~~~ 277 (765)
T PF10214_consen 212 VSDSNRLLVCNRSKLMLIDFESNWQTEYL-VTAKTWSWILDVKRSPDNPSHVFIL-TSKEIIWLDVKS 277 (765)
T ss_pred cCCCCEEEEEcCCceEEEECCCCCccchh-ccCCChhheeeEEecCCccceEEEE-ecCeEEEEEccC
Confidence 99989999999989999999876442322 1223445688888777632 33333 335677777766
No 414
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=96.28 E-value=0.78 Score=47.60 Aligned_cols=207 Identities=16% Similarity=0.113 Sum_probs=120.5
Q ss_pred EEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEE-
Q 003840 557 ITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV- 635 (792)
Q Consensus 557 V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~- 635 (792)
-..|+-.+||..-+++...+.|--.|-.+ ++....-.+....-..|..-||+...|+ ....-|.-+|-++.+..+.
T Consensus 64 p~dvapapdG~VWft~qg~gaiGhLdP~t-Gev~~ypLg~Ga~Phgiv~gpdg~~Wit--d~~~aI~R~dpkt~evt~f~ 140 (353)
T COG4257 64 PFDVAPAPDGAVWFTAQGTGAIGHLDPAT-GEVETYPLGSGASPHGIVVGPDGSAWIT--DTGLAIGRLDPKTLEVTRFP 140 (353)
T ss_pred ccccccCCCCceEEecCccccceecCCCC-CceEEEecCCCCCCceEEECCCCCeeEe--cCcceeEEecCcccceEEee
Confidence 45667778888888888888887778777 4444433444555667788888875552 2222566666665554332
Q ss_pred e-----eCCeeEEEEecCCCEEEEEEc---------CCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-
Q 003840 636 F-----KGGTAQMRFQPHLGRYLAAAA---------ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED- 700 (792)
Q Consensus 636 ~-----~~~~~~v~~sp~~~~lla~s~---------dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d- 700 (792)
+ ........|.+.+...+++.. .+.|++|+.-. ...-..||..|+|...++.-.+
T Consensus 141 lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPq----------G~gpyGi~atpdGsvwyaslagn 210 (353)
T COG4257 141 LPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQ----------GGGPYGICATPDGSVWYASLAGN 210 (353)
T ss_pred cccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccCC----------CCCCcceEECCCCcEEEEecccc
Confidence 1 234456778888777776653 23445554432 2345678889999987776555
Q ss_pred eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE--EEcccCCCeEEEEEeCCCC
Q 003840 701 SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM--TLTAHEGLIAALAVSTETG 777 (792)
Q Consensus 701 ~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~--~~~~h~~~V~sl~fspdg~ 777 (792)
.|...|-.++.. +.+..-.........+-.+|.++.-++....+.++-||-...... .+.+....-.++.....++
T Consensus 211 aiaridp~~~~a-ev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~sW~eypLPgs~arpys~rVD~~gr 288 (353)
T COG4257 211 AIARIDPFAGHA-EVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTSWIEYPLPGSKARPYSMRVDRHGR 288 (353)
T ss_pred ceEEcccccCCc-ceecCCCcccccccccccCccCcEEEeccCCceeeEeCcccccceeeeCCCCCCCcceeeeccCCc
Confidence 677777655421 222222222333455556677777777666677777776654433 2333333344444444333
No 415
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.26 E-value=0.92 Score=50.88 Aligned_cols=41 Identities=10% Similarity=0.041 Sum_probs=32.0
Q ss_pred eeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCC
Q 003840 640 TAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTK 680 (792)
Q Consensus 640 ~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~ 680 (792)
...++.+|.+...+++.+-|.|.++|+.++..++.+++-.+
T Consensus 310 ~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRd 350 (415)
T PF14655_consen 310 GESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRD 350 (415)
T ss_pred EEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCcc
Confidence 45678899977666665668999999999988888877544
No 416
>PLN02153 epithiospecifier protein
Probab=96.24 E-value=0.48 Score=52.11 Aligned_cols=174 Identities=9% Similarity=-0.016 Sum_probs=80.8
Q ss_pred CeEEEEEeCC-----CcEEEEEcCCCeeEEEeeC-----C--e-eEEEEecCCCEEEEEEcC-----------CeEEEEE
Q 003840 610 DDLICSCDGD-----GEIRYWSINNGSCTRVFKG-----G--T-AQMRFQPHLGRYLAAAAE-----------NVVSILD 665 (792)
Q Consensus 610 ~~ll~sgs~D-----g~I~iwdl~~~~~~~~~~~-----~--~-~~v~~sp~~~~lla~s~d-----------g~I~i~D 665 (792)
+.+++.|+.+ ..+.+||+.+.+....-.- + . .......++..++.|+.+ ..|.+||
T Consensus 86 ~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd 165 (341)
T PLN02153 86 TKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYN 165 (341)
T ss_pred CEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEE
Confidence 4566677653 3578899887665432110 1 1 111222333444555532 2577889
Q ss_pred CCCCeEEEEecCC-----CCCeEEEEEcCCCCEEEEEeC--------------CeEEEEECCCCCCcceEEEeec-CCCc
Q 003840 666 AETQACRLSLQGH-----TKPIDSVCWDPSGELLASVSE--------------DSVRVWTVGSGSEGECVHELSC-NGNK 725 (792)
Q Consensus 666 ~~t~~~~~~l~~h-----~~~V~sv~~spdg~~Las~s~--------------d~I~IwDl~s~~~~~~i~~~~~-~~~~ 725 (792)
.++.+-.. +... ...-.+++. -++++++.++. +.|.+||+.+.. ...+..... ....
T Consensus 166 ~~~~~W~~-l~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~-W~~~~~~g~~P~~r 242 (341)
T PLN02153 166 IADGKWVQ-LPDPGENFEKRGGAGFAV-VQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGK-WTEVETTGAKPSAR 242 (341)
T ss_pred CCCCeEee-CCCCCCCCCCCCcceEEE-ECCeEEEEeccccccccCCccceecCceEEEEcCCCc-EEeccccCCCCCCc
Confidence 88764332 1111 111112222 34555554431 257888887642 222221100 1111
Q ss_pred eEEEEEeCCCCEEEEEEcC--------------CeEEEEECCCCcEEEEccc------CCC--eEEEEEeCCCCEEEEEe
Q 003840 726 FHSCVFHPTYPSLLVIGCY--------------QSLELWNMSENKTMTLTAH------EGL--IAALAVSTETGYVASAS 783 (792)
Q Consensus 726 i~si~fspdg~~L~sgs~d--------------g~I~IwDl~~~~~~~~~~h------~~~--V~sl~fspdg~~LaSgs 783 (792)
....+..-+++.++.|+.. +.|+.||..+.....+... ... ..++.+.-++++++.||
T Consensus 243 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~~~~~~~pr~~~~~~~~~v~~~~~~~~~gG 322 (341)
T PLN02153 243 SVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGECGEPAMPRGWTAYTTATVYGKNGLLMHGG 322 (341)
T ss_pred ceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCccEEEeccCCCCCCCCCccccccccccCCcceEEEEcC
Confidence 1112223355666676641 2678889887765543211 111 12333444556777777
Q ss_pred CCC
Q 003840 784 HDK 786 (792)
Q Consensus 784 ~DG 786 (792)
.++
T Consensus 323 ~~~ 325 (341)
T PLN02153 323 KLP 325 (341)
T ss_pred cCC
Confidence 643
No 417
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=96.23 E-value=2.9 Score=47.09 Aligned_cols=223 Identities=10% Similarity=0.131 Sum_probs=120.0
Q ss_pred CCeEEEEeCCCcEEEEeCCCCCce---eEEecccCCCeEEEEEcC---C-CCeEEEEEeCCCcEEEEEcCCC--e-----
Q 003840 566 MPRLATSSFDKTVRVWDADNPGYS---LRTFMGHSASVMSLDFHP---N-KDDLICSCDGDGEIRYWSINNG--S----- 631 (792)
Q Consensus 566 g~~Lasgs~Dg~V~IWdl~s~~~~---i~~~~~h~~~V~sl~fsp---d-~~~ll~sgs~Dg~I~iwdl~~~--~----- 631 (792)
...|++|+..|.++||+....+.. +..-..-..+|..|..-. . ....| +.-.-..+.+|.+... .
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~L-aVLhP~kl~vY~v~~~~g~~~~g~ 115 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQL-AVLHPRKLSVYSVSLVDGTVEHGN 115 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceE-EEecCCEEEEEEEEecCCCcccCc
Confidence 458999999999999998653321 222223456777776532 2 22233 2334567777776321 1
Q ss_pred ---eEEEe----eCCeeEEEEecC-----CCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeC
Q 003840 632 ---CTRVF----KGGTAQMRFQPH-----LGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSE 699 (792)
Q Consensus 632 ---~~~~~----~~~~~~v~~sp~-----~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~ 699 (792)
....+ ......+++-+- ...+++=+.||.+.+|+-+.......+.. ----..++|.+.-+.|++++.
T Consensus 116 ~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt~ss 194 (418)
T PF14727_consen 116 QYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVTASS 194 (418)
T ss_pred EEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEEecC
Confidence 11111 122233333332 24567778899999999887665555543 112234678888888888888
Q ss_pred C-eEEEEECCCC--------------------CCcceEEEeecCCCc--eEEEEEeCCCCEEEEEEcCCeEEEEECCCCc
Q 003840 700 D-SVRVWTVGSG--------------------SEGECVHELSCNGNK--FHSCVFHPTYPSLLVIGCYQSLELWNMSENK 756 (792)
Q Consensus 700 d-~I~IwDl~s~--------------------~~~~~i~~~~~~~~~--i~si~fspdg~~L~sgs~dg~I~IwDl~~~~ 756 (792)
+ .|..|....- +....-.++...+.. |..+.++.....|++.+. ..+.+.+.. |.
T Consensus 195 s~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~~~~~IvvLge-r~Lf~l~~~-G~ 272 (418)
T PF14727_consen 195 SWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFSSSESDIVVLGE-RSLFCLKDN-GS 272 (418)
T ss_pred ceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcCCCCceEEEEec-ceEEEEcCC-Ce
Confidence 7 8888875211 111122222222211 222333333444555443 466666664 44
Q ss_pred EEEEcccCCCeEEEE-E----eCCC---CEEEEEeCCCcEEEeC
Q 003840 757 TMTLTAHEGLIAALA-V----STET---GYVASASHDKFVKLWK 792 (792)
Q Consensus 757 ~~~~~~h~~~V~sl~-f----spdg---~~LaSgs~DG~I~IWd 792 (792)
.......+....|++ | ..++ ..++.+++++.+.||+
T Consensus 273 l~~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~ 316 (418)
T PF14727_consen 273 LRFQKRLDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYE 316 (418)
T ss_pred EEEEEecCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEe
Confidence 443333333333332 1 1222 2477888999999884
No 418
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=96.21 E-value=1.9 Score=44.82 Aligned_cols=236 Identities=13% Similarity=0.043 Sum_probs=144.3
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEe
Q 003840 514 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTF 593 (792)
Q Consensus 514 ~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~ 593 (792)
.-..++-++||..-+++...+.|--.|-.+++....--+....-..|..-||+..-++-+.. -|.-.|-++. .+..|
T Consensus 63 ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~--evt~f 139 (353)
T COG4257 63 APFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTL--EVTRF 139 (353)
T ss_pred CccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCccc--ceEEe
Confidence 35678888999988888888888888889998887776767777788888988876665544 3444555432 22222
Q ss_pred c----ccCCCeEEEEEcCCCCeEEEEEeCC---------CcEEEEEcCCCeeEEEeeCCeeEEEEecCCCEEEEEEcCCe
Q 003840 594 M----GHSASVMSLDFHPNKDDLICSCDGD---------GEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENV 660 (792)
Q Consensus 594 ~----~h~~~V~sl~fspd~~~ll~sgs~D---------g~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~lla~s~dg~ 660 (792)
. ..........|.+.|. +.+++... +.|++|+.-.+ .....+|..|++...++.-.++.
T Consensus 140 ~lp~~~a~~nlet~vfD~~G~-lWFt~q~G~yGrLdPa~~~i~vfpaPqG-------~gpyGi~atpdGsvwyaslagna 211 (353)
T COG4257 140 PLPLEHADANLETAVFDPWGN-LWFTGQIGAYGRLDPARNVISVFPAPQG-------GGPYGICATPDGSVWYASLAGNA 211 (353)
T ss_pred ecccccCCCcccceeeCCCcc-EEEeeccccceecCcccCceeeeccCCC-------CCCcceEECCCCcEEEEeccccc
Confidence 2 2345577788888876 44465421 23344433221 24566889999888888888888
Q ss_pred EEEEECCCCeE--EEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCE
Q 003840 661 VSILDAETQAC--RLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPS 737 (792)
Q Consensus 661 I~i~D~~t~~~--~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~ 737 (792)
|...|..++.. +-.-.......+.+--++-|+..++.... .+..||-.... -.-..+.+....-.++.+...++.
T Consensus 212 iaridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~s--W~eypLPgs~arpys~rVD~~grV 289 (353)
T COG4257 212 IARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTS--WIEYPLPGSKARPYSMRVDRHGRV 289 (353)
T ss_pred eEEcccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCccccc--ceeeeCCCCCCCcceeeeccCCcE
Confidence 88888877622 11111112234445556677766664444 67777654321 222334444445566666666655
Q ss_pred EEEEEcCCeEEEEECCCCcEEEEcc
Q 003840 738 LLVIGCYQSLELWNMSENKTMTLTA 762 (792)
Q Consensus 738 L~sgs~dg~I~IwDl~~~~~~~~~~ 762 (792)
.++-...|.|.-||-++.....+..
T Consensus 290 W~sea~agai~rfdpeta~ftv~p~ 314 (353)
T COG4257 290 WLSEADAGAIGRFDPETARFTVLPI 314 (353)
T ss_pred EeeccccCceeecCcccceEEEecC
Confidence 4444445667777776665554443
No 419
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=96.15 E-value=2.2 Score=47.24 Aligned_cols=186 Identities=17% Similarity=0.181 Sum_probs=110.7
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEEC----CCCCe--EEEEe-CC---CcEEEEeCCCCCceeE
Q 003840 522 SDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFS----PSMPR--LATSS-FD---KTVRVWDADNPGYSLR 591 (792)
Q Consensus 522 pdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fs----pdg~~--Lasgs-~D---g~V~IWdl~s~~~~i~ 591 (792)
|...+|+....++-+.+||++. +.+..+.. +.++.|... -+++. |++++ .+ ..|++|.++.....+.
T Consensus 66 p~kSlIigTdK~~GL~VYdL~G-k~lq~~~~--Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~ 142 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDLDG-KELQSLPV--GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELT 142 (381)
T ss_dssp GGG-EEEEEETTTEEEEEETTS--EEEEE-S--S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEE
T ss_pred cccceEEEEeCCCCEEEEcCCC-cEEEeecC--CCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcce
Confidence 3445777778888999999874 45555542 333433321 13432 44443 32 4699998874333344
Q ss_pred Eecc-------cCCCeEEEEEc--C-CCCeEEEEEeCCCcEEEEEcC---CC----eeEEEeeC--CeeEEEEecCCCEE
Q 003840 592 TFMG-------HSASVMSLDFH--P-NKDDLICSCDGDGEIRYWSIN---NG----SCTRVFKG--GTAQMRFQPHLGRY 652 (792)
Q Consensus 592 ~~~~-------h~~~V~sl~fs--p-d~~~ll~sgs~Dg~I~iwdl~---~~----~~~~~~~~--~~~~v~~sp~~~~l 652 (792)
.+.. ....++.+|+. + ++..+++...++|.+..|.+. .+ +.++.|.. .+..|......+.|
T Consensus 143 ~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDDe~g~L 222 (381)
T PF02333_consen 143 DVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDDETGRL 222 (381)
T ss_dssp E-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEETTTTEE
T ss_pred EcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEecccCCE
Confidence 4332 12347788874 3 456677788899999888775 23 35666653 45667888888999
Q ss_pred EEEEcCCeEEEEECCC-----CeEEEEecC--CCCCeEEEEEcC--CCC-EEEEEeCC--eEEEEECCCC
Q 003840 653 LAAAAENVVSILDAET-----QACRLSLQG--HTKPIDSVCWDP--SGE-LLASVSED--SVRVWTVGSG 710 (792)
Q Consensus 653 la~s~dg~I~i~D~~t-----~~~~~~l~~--h~~~V~sv~~sp--dg~-~Las~s~d--~I~IwDl~s~ 710 (792)
+++-++--|.-|+.+- +..+....+ ....|-.|++-. +++ ||++.+.+ +..||+....
T Consensus 223 YvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 223 YVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGP 292 (381)
T ss_dssp EEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred EEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 9999999999998863 233333322 345677777643 443 67766655 8999998753
No 420
>PHA03098 kelch-like protein; Provisional
Probab=96.15 E-value=0.22 Score=58.37 Aligned_cols=149 Identities=9% Similarity=0.017 Sum_probs=73.2
Q ss_pred CeEEEEEeCC-----CcEEEEEcCCCeeEEEe--eCCeeE-EEEecCCCEEEEEEcC------CeEEEEECCCCeEEEE-
Q 003840 610 DDLICSCDGD-----GEIRYWSINNGSCTRVF--KGGTAQ-MRFQPHLGRYLAAAAE------NVVSILDAETQACRLS- 674 (792)
Q Consensus 610 ~~ll~sgs~D-----g~I~iwdl~~~~~~~~~--~~~~~~-v~~sp~~~~lla~s~d------g~I~i~D~~t~~~~~~- 674 (792)
+.+++.||.+ ..+..||..+.+....- ..+... .....++..++.|+.+ +.+..||..+.+-...
T Consensus 343 ~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~ 422 (534)
T PHA03098 343 NRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGS 422 (534)
T ss_pred CEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecC
Confidence 4577777765 34778888776544321 111111 1122333444455521 4688899887643221
Q ss_pred -ecCCCCCeEEEEEcCCCCEEEEEeCC---------eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcC
Q 003840 675 -LQGHTKPIDSVCWDPSGELLASVSED---------SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY 744 (792)
Q Consensus 675 -l~~h~~~V~sv~~spdg~~Las~s~d---------~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~d 744 (792)
+..... -.+++. .++++++.|+.+ .+.+||..+.. +..+..+.........+. -+++.+++|+.+
T Consensus 423 ~~p~~r~-~~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~-W~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~ 497 (534)
T PHA03098 423 PLPISHY-GGCAIY-HDGKIYVIGGISYIDNIKVYNIVESYNPVTNK-WTELSSLNFPRINASLCI--FNNKIYVVGGDK 497 (534)
T ss_pred CCCcccc-CceEEE-ECCEEEEECCccCCCCCcccceEEEecCCCCc-eeeCCCCCcccccceEEE--ECCEEEEEcCCc
Confidence 111111 112222 355666666532 37888887642 122221211111112222 266666666654
Q ss_pred -----CeEEEEECCCCcEEEEccc
Q 003840 745 -----QSLELWNMSENKTMTLTAH 763 (792)
Q Consensus 745 -----g~I~IwDl~~~~~~~~~~h 763 (792)
+.|.+||..+.....+...
T Consensus 498 ~~~~~~~v~~yd~~~~~W~~~~~~ 521 (534)
T PHA03098 498 YEYYINEIEVYDDKTNTWTLFCKF 521 (534)
T ss_pred CCcccceeEEEeCCCCEEEecCCC
Confidence 4788999888876544443
No 421
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.14 E-value=0.61 Score=56.59 Aligned_cols=66 Identities=14% Similarity=0.089 Sum_probs=45.4
Q ss_pred EEEEEeCCCcEEEEEcCCCeeEEEeeCCee---------------EEEEec--CCCEEEEEEc----------CCeEEEE
Q 003840 612 LICSCDGDGEIRYWSINNGSCTRVFKGGTA---------------QMRFQP--HLGRYLAAAA----------ENVVSIL 664 (792)
Q Consensus 612 ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~---------------~v~~sp--~~~~lla~s~----------dg~I~i~ 664 (792)
.|+.++.|+.|.-.|.++|+.+..|..... .+.-.| .++.+++++. +|.|+-|
T Consensus 262 rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~ 341 (764)
T TIGR03074 262 RIILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAF 341 (764)
T ss_pred EEEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEE
Confidence 455778899999999999998876532100 001111 2356777643 5889999
Q ss_pred ECCCCeEEEEecC
Q 003840 665 DAETQACRLSLQG 677 (792)
Q Consensus 665 D~~t~~~~~~l~~ 677 (792)
|.++++.+..+..
T Consensus 342 Da~TGkl~W~~~~ 354 (764)
T TIGR03074 342 DVNTGALVWAWDP 354 (764)
T ss_pred ECCCCcEeeEEec
Confidence 9999999988763
No 422
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=96.07 E-value=1.1 Score=53.89 Aligned_cols=95 Identities=12% Similarity=0.133 Sum_probs=52.5
Q ss_pred CCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeE
Q 003840 554 SSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT 633 (792)
Q Consensus 554 ~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~ 633 (792)
...|..|.++++|++|+..|..| |.|-.+.........+.+....|.|=.+.-+ ..++ ....
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~-~~~~-~~~~--------------- 145 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVD-ERFF-TSNS--------------- 145 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEec-hhhc-cCCC---------------
Confidence 45688999999999999998877 5555554311111223333333433333222 2222 1110
Q ss_pred EEeeCCeeEEEEecC---CCEEEEEEcCCeEEEEECCCC
Q 003840 634 RVFKGGTAQMRFQPH---LGRYLAAAAENVVSILDAETQ 669 (792)
Q Consensus 634 ~~~~~~~~~v~~sp~---~~~lla~s~dg~I~i~D~~t~ 669 (792)
...+..+.|+|. +..+++-++|+.+++||+...
T Consensus 146 ---~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 146 ---SLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred ---CceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence 112334566665 367777777777777777543
No 423
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.05 E-value=0.046 Score=65.48 Aligned_cols=73 Identities=25% Similarity=0.363 Sum_probs=57.8
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEE---ECCCCCeEEEEeCCCcEEEEeCC
Q 003840 510 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVR---FSPSMPRLATSSFDKTVRVWDAD 584 (792)
Q Consensus 510 ~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~---fspdg~~Lasgs~Dg~V~IWdl~ 584 (792)
.-.++|+|++|+.||++++.|-.+|.|.+||+..++..+.+..|..+++.+- |..++..++++...|. +|.+.
T Consensus 128 ~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 128 RVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKLV 203 (1206)
T ss_pred ccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEEE
Confidence 4467899999999999999999999999999999999999887766655443 4445557777777775 55543
No 424
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.04 E-value=0.014 Score=58.65 Aligned_cols=134 Identities=13% Similarity=0.045 Sum_probs=77.7
Q ss_pred EEEeCCCeEEEEECCCCceeEEe-ccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEc
Q 003840 528 ATGGHDKKAVLWHTDTLKSKTNL-EEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFH 606 (792)
Q Consensus 528 asgs~Dg~I~vWdl~t~~~~~~l-~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fs 606 (792)
...+.||.|+-+++...+....- ..|...-.. ..-+..+++|+.+|.|++|...-.+.....+......|.++.-.
T Consensus 34 ~~~sa~~~v~~~~~~k~k~s~rse~~~~e~~~v---~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~ 110 (238)
T KOG2444|consen 34 RATSADGLVRERKVRKHKESCRSERFIDEGQRV---VTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPN 110 (238)
T ss_pred ccccCCcccccchhhhhhhhhhhhhhhhcceee---cccCceEEeecccceEEEecCCccchHHHhhhcccccceecccc
Confidence 33456777777776543322111 112222111 22345799999999999999875444333333333444444333
Q ss_pred CCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCCeeEEEEecCCCEEEEEEcCCeEEEEECCCC
Q 003840 607 PNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQ 669 (792)
Q Consensus 607 pd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~ 669 (792)
-+...+.+++..||.|+.|++.-.+.+.....+.. .++..+++.+.++.|.+|++...
T Consensus 111 ~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~-----~~~e~~ivv~sd~~i~~a~~S~d 168 (238)
T KOG2444|consen 111 GRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNF-----ESGEELIVVGSDEFLKIADTSHD 168 (238)
T ss_pred ccccceeEEeccCCceeeeccccCceeeeeccccC-----CCcceeEEecCCceEEeeccccc
Confidence 33344888999999999999988776654432221 33455666666666666655444
No 425
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.89 E-value=0.31 Score=58.97 Aligned_cols=140 Identities=10% Similarity=0.100 Sum_probs=89.3
Q ss_pred CeEEEEEcCCCCEEEEEe--CCCeEEEEECCCCceeE-----Eec------cCCCCEEEEEECCCCC-eEEEEeCCCcEE
Q 003840 514 KVICCHFSSDGKLLATGG--HDKKAVLWHTDTLKSKT-----NLE------EHSSLITDVRFSPSMP-RLATSSFDKTVR 579 (792)
Q Consensus 514 ~V~~lafspdg~~Lasgs--~Dg~I~vWdl~t~~~~~-----~l~------~h~~~V~~i~fspdg~-~Lasgs~Dg~V~ 579 (792)
.|..+...+|++..++.. .+-.|++||+++..... -|. .....+.++.|+|.-. ..+++..|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 455666677777655543 33478899987543222 111 2334467888988643 467778899999
Q ss_pred EEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEe-------eCCeeEEEEecCCCEE
Q 003840 580 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF-------KGGTAQMRFQPHLGRY 652 (792)
Q Consensus 580 IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~-------~~~~~~v~~sp~~~~l 652 (792)
|..+......+..+ .....++|++|+|.|..++ .|...|++.-|...-. ..+.+ ...+.+++|.....++
T Consensus 182 V~~~~~~~~~v~s~-p~t~~~Tav~WSprGKQl~-iG~nnGt~vQy~P~le-ik~~ip~Pp~~e~yrvl~v~Wl~t~efl 258 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTSF-PVTNSQTAVLWSPRGKQLF-IGRNNGTEVQYEPSLE-IKSEIPEPPVEENYRVLSVTWLSTQEFL 258 (1405)
T ss_pred hhhhhhhhhhhccc-CcccceeeEEeccccceee-EecCCCeEEEeecccc-eeecccCCCcCCCcceeEEEEecceeEE
Confidence 98876433333332 3556789999999998766 8888999998876532 22222 2456778887776665
Q ss_pred EEEE
Q 003840 653 LAAA 656 (792)
Q Consensus 653 la~s 656 (792)
++.+
T Consensus 259 vvy~ 262 (1405)
T KOG3630|consen 259 VVYG 262 (1405)
T ss_pred EEec
Confidence 5543
No 426
>PHA03098 kelch-like protein; Provisional
Probab=95.84 E-value=0.26 Score=57.85 Aligned_cols=181 Identities=12% Similarity=0.085 Sum_probs=86.3
Q ss_pred CCCCEEEEEeCCC------eEEEEECCCCceeEE--eccCCCCEEEEEECCCCCeEEEEeCC-----CcEEEEeCCCCCc
Q 003840 522 SDGKLLATGGHDK------KAVLWHTDTLKSKTN--LEEHSSLITDVRFSPSMPRLATSSFD-----KTVRVWDADNPGY 588 (792)
Q Consensus 522 pdg~~Lasgs~Dg------~I~vWdl~t~~~~~~--l~~h~~~V~~i~fspdg~~Lasgs~D-----g~V~IWdl~s~~~ 588 (792)
.++.+++.|+.++ .+..||..+.+.... +.........+.+ ++.+++.||.+ ..+.+||..+...
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~W 370 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVF--NNRIYVIGGIYNSISLNTVESWKPGESKW 370 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEE--CCEEEEEeCCCCCEecceEEEEcCCCCce
Confidence 3455667776542 577888776544221 1111222222222 56777888765 3477888876332
Q ss_pred eeE-EecccCCCeEEEEEcCCCCeEEEEEeCC------CcEEEEEcCCCeeEEEeeC--Ce-eEEEEecCCCEEEEEEcC
Q 003840 589 SLR-TFMGHSASVMSLDFHPNKDDLICSCDGD------GEIRYWSINNGSCTRVFKG--GT-AQMRFQPHLGRYLAAAAE 658 (792)
Q Consensus 589 ~i~-~~~~h~~~V~sl~fspd~~~ll~sgs~D------g~I~iwdl~~~~~~~~~~~--~~-~~v~~sp~~~~lla~s~d 658 (792)
... .+. +...-.+++.. ++.+++.|+.+ ..+..||+.+.+....-.. +. ...+...++..++.|+.+
T Consensus 371 ~~~~~lp-~~r~~~~~~~~--~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~ 447 (534)
T PHA03098 371 REEPPLI-FPRYNPCVVNV--NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGIS 447 (534)
T ss_pred eeCCCcC-cCCccceEEEE--CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCcc
Confidence 111 111 11111122222 34566666632 4588899887765432211 11 111222333444444432
Q ss_pred --------CeEEEEECCCCeEEEE--ecCCCCCeEEEEEcCCCCEEEEEeCC------eEEEEECCC
Q 003840 659 --------NVVSILDAETQACRLS--LQGHTKPIDSVCWDPSGELLASVSED------SVRVWTVGS 709 (792)
Q Consensus 659 --------g~I~i~D~~t~~~~~~--l~~h~~~V~sv~~spdg~~Las~s~d------~I~IwDl~s 709 (792)
..+.+||.++.+-... +...... .+++. -++++++.|+.+ .|.+||..+
T Consensus 448 ~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~-~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~~ 512 (534)
T PHA03098 448 YIDNIKVYNIVESYNPVTNKWTELSSLNFPRIN-ASLCI-FNNKIYVVGGDKYEYYINEIEVYDDKT 512 (534)
T ss_pred CCCCCcccceEEEecCCCCceeeCCCCCccccc-ceEEE-ECCEEEEEcCCcCCcccceeEEEeCCC
Confidence 2388899887643321 1111111 12222 256666666543 577777765
No 427
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=95.83 E-value=0.0039 Score=72.63 Aligned_cols=120 Identities=15% Similarity=0.152 Sum_probs=75.2
Q ss_pred eeecCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECC--CCceeEE-----eccCCCCEEEEEECC---CCCeEEEEeCC
Q 003840 507 SVRASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTD--TLKSKTN-----LEEHSSLITDVRFSP---SMPRLATSSFD 575 (792)
Q Consensus 507 ~l~~H~~~V~~lafsp-dg~~Lasgs~Dg~I~vWdl~--t~~~~~~-----l~~h~~~V~~i~fsp---dg~~Lasgs~D 575 (792)
.+++..+.|..+.|-. +...++ -.-|.+.|||++ .|+.... .......+.-|.|.| +.-++..+-.+
T Consensus 127 l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~ 204 (1283)
T KOG1916|consen 127 LAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKG 204 (1283)
T ss_pred HHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCC
Confidence 3566778888888854 222222 233678899876 3443222 223344455666665 55677778888
Q ss_pred CcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCC
Q 003840 576 KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG 630 (792)
Q Consensus 576 g~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~ 630 (792)
+.|++..++. .....+.+|...+..++|...|-.++..-+-||++..|-+..|
T Consensus 205 ~~i~lL~~~r--a~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG 257 (1283)
T KOG1916|consen 205 GEIRLLNINR--ALRSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDG 257 (1283)
T ss_pred CceeEeeech--HHHHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCC
Confidence 9999887765 2235566799888888887776555655556666666655444
No 428
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.76 E-value=1.1 Score=53.94 Aligned_cols=29 Identities=28% Similarity=0.191 Sum_probs=22.7
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCeEEEE
Q 003840 511 STSKVICCHFSSDGKLLATGGHDKKAVLW 539 (792)
Q Consensus 511 H~~~V~~lafspdg~~Lasgs~Dg~I~vW 539 (792)
-.-.|..|.++++|++||..|..|.+.+.
T Consensus 83 ~~f~v~~i~~n~~g~~lal~G~~~v~V~~ 111 (717)
T PF10168_consen 83 PLFEVHQISLNPTGSLLALVGPRGVVVLE 111 (717)
T ss_pred CceeEEEEEECCCCCEEEEEcCCcEEEEE
Confidence 34468999999999999999887655443
No 429
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=95.74 E-value=1.4 Score=48.28 Aligned_cols=77 Identities=8% Similarity=0.018 Sum_probs=43.6
Q ss_pred EEEEecCCCCCeEEEEEcC-------CCCEEEEEeCC-eEEEEECCCCCCcceEEEee-cCCCceEEEEEeCCCCEEEEE
Q 003840 671 CRLSLQGHTKPIDSVCWDP-------SGELLASVSED-SVRVWTVGSGSEGECVHELS-CNGNKFHSCVFHPTYPSLLVI 741 (792)
Q Consensus 671 ~~~~l~~h~~~V~sv~~sp-------dg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~-~~~~~i~si~fspdg~~L~sg 741 (792)
++..+..| ..+..+.|.. .|.+|++.-.. .|....+...........+. .....+..+++.|||.++++.
T Consensus 245 P~~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~ 323 (331)
T PF07995_consen 245 PVFAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSD 323 (331)
T ss_dssp -SEEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE
T ss_pred cceeecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEE
Confidence 44445544 4456666653 44566666555 77777776442222223322 334479999999999877777
Q ss_pred EcCCeEE
Q 003840 742 GCYQSLE 748 (792)
Q Consensus 742 s~dg~I~ 748 (792)
..+|.|+
T Consensus 324 d~~G~iy 330 (331)
T PF07995_consen 324 DSDGKIY 330 (331)
T ss_dssp -TTTTEE
T ss_pred CCCCeEe
Confidence 7777764
No 430
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=95.69 E-value=5.9 Score=46.14 Aligned_cols=245 Identities=12% Similarity=0.118 Sum_probs=119.2
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCCc--eeEEeccC-CCCEEEEEECCCC-CeEEEEeCCCcEEEEeCCCCC-ceeEEecc
Q 003840 521 SSDGKLLATGGHDKKAVLWHTDTLK--SKTNLEEH-SSLITDVRFSPSM-PRLATSSFDKTVRVWDADNPG-YSLRTFMG 595 (792)
Q Consensus 521 spdg~~Lasgs~Dg~I~vWdl~t~~--~~~~l~~h-~~~V~~i~fspdg-~~Lasgs~Dg~V~IWdl~s~~-~~i~~~~~ 595 (792)
..++..++.+..+|.++...+.... .....-+. ....+++.+..++ .+|+.|+.-|.=.++.+.... ..+..+ .
T Consensus 219 ~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~-~ 297 (504)
T PF10433_consen 219 DKDGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSL-P 297 (504)
T ss_dssp STTSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE--
T ss_pred cCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEec-c
Confidence 4567789999999999888776433 11222222 4556677776655 477777765554444444322 223333 3
Q ss_pred cCCCeEEEEEcCC---CC-------eEEEEEe--CCCcEEEEEcCCCee---EEEee-CCeeEEEEecC----CCEEEEE
Q 003840 596 HSASVMSLDFHPN---KD-------DLICSCD--GDGEIRYWSINNGSC---TRVFK-GGTAQMRFQPH----LGRYLAA 655 (792)
Q Consensus 596 h~~~V~sl~fspd---~~-------~ll~sgs--~Dg~I~iwdl~~~~~---~~~~~-~~~~~v~~sp~----~~~lla~ 655 (792)
.-++|.++++... +. .++++++ .+|.++++.-.-+-. ..... ..+..+-..+. +.+++.+
T Consensus 298 N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi~~~~~~~~~~~l~~v~~iW~l~~~~~~~~~lv~S 377 (504)
T PF10433_consen 298 NWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGIGIEGLELASSELPGVTGIWTLKLSSSDHSYLVLS 377 (504)
T ss_dssp ---SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEESBEEE--EEEEEEESTEEEEEEE-SSSSSBSEEEEE
T ss_pred CcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEeccCCceeeeeeccCCCCceEEEEeeecCCCceEEEEE
Confidence 5578888888532 12 4554544 467888874321111 11111 12333222222 2344444
Q ss_pred EcCCeEEEEEC---CCCeEEEEec--CC---CCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEeec-CCCce
Q 003840 656 AAENVVSILDA---ETQACRLSLQ--GH---TKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSC-NGNKF 726 (792)
Q Consensus 656 s~dg~I~i~D~---~t~~~~~~l~--~h---~~~V~sv~~spdg~~Las~s~d~I~IwDl~s~~~~~~i~~~~~-~~~~i 726 (792)
..+ .-.++.+ +..+.+..+. +. ...+.+-.+. +.+++=.+...|++.+.... +....+.. .+..|
T Consensus 378 ~~~-~T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~--~~~ivQVt~~~i~l~~~~~~---~~~~~w~~~~~~~I 451 (504)
T PF10433_consen 378 FPN-ETRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVG--DGRIVQVTPKGIRLIDLEDG---KLTQEWKPPAGSII 451 (504)
T ss_dssp ESS-EEEEEEES----SSEEEEE---TS-SSS-EEEEEEET--TTEEEEEESSEEEEEESSST---SEEEEEE-TTS---
T ss_pred cCC-ceEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcC--CCeEEEEecCeEEEEECCCC---eEEEEEeCCCCCeE
Confidence 443 4344444 2333332221 11 1223333332 56677777778889987654 44444332 23334
Q ss_pred EEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEc-----ccCCCeEEEEEeC
Q 003840 727 HSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLT-----AHEGLIAALAVST 774 (792)
Q Consensus 727 ~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~~~-----~h~~~V~sl~fsp 774 (792)
.++++ .+.+++++..++.+.++.+...... ... .....|.|+...|
T Consensus 452 ~~a~~--~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eis~l~i~p 503 (504)
T PF10433_consen 452 VAASI--NDPQVLVALSGGELVYFELDDNKISVSDNDETILELDNEISCLSIEP 503 (504)
T ss_dssp SEEEE--SSSEEEEEE-TTEEEEEEEETTEEEEEEE----EE-SS-EEEEE---
T ss_pred EEEEE--CCCEEEEEEeCCcEEEEEEECCceeeeeeccccccCCCceEEEEeCC
Confidence 44444 3457888888889999988877664 211 2467888888765
No 431
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.66 E-value=0.78 Score=52.30 Aligned_cols=146 Identities=12% Similarity=0.237 Sum_probs=90.1
Q ss_pred CCCEEEEEECCCCCeEEEEe--CCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCC----CCeEEEEEeCCCcEEEEEc
Q 003840 554 SSLITDVRFSPSMPRLATSS--FDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPN----KDDLICSCDGDGEIRYWSI 627 (792)
Q Consensus 554 ~~~V~~i~fspdg~~Lasgs--~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd----~~~ll~sgs~Dg~I~iwdl 627 (792)
-.+|..|+|......++|.- .+|.+++=|- ..+ +.-..|..++|.|- ...|+ +.-....|.+|-+
T Consensus 19 iHPvhGlaWTDGkqVvLT~L~l~~gE~kfGds----~vi----GqFEhV~GlsW~P~~~~~~paLL-AVQHkkhVtVWqL 89 (671)
T PF15390_consen 19 IHPVHGLAWTDGKQVVLTDLQLHNGEPKFGDS----KVI----GQFEHVHGLSWAPPCTADTPALL-AVQHKKHVTVWQL 89 (671)
T ss_pred hccccceEecCCCEEEEEeeeeeCCccccCCc----cEe----eccceeeeeeecCcccCCCCceE-EEeccceEEEEEe
Confidence 35688899984333444442 2333333221 222 33346889999885 33455 4556889999987
Q ss_pred CC-----CeeEEEeeC--------CeeEEEEecCCCEEEEEEcCCeEEEEECCCC--eEEEEecCCCCCeEEEEEcCCCC
Q 003840 628 NN-----GSCTRVFKG--------GTAQMRFQPHLGRYLAAAAENVVSILDAETQ--ACRLSLQGHTKPIDSVCWDPSGE 692 (792)
Q Consensus 628 ~~-----~~~~~~~~~--------~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~--~~~~~l~~h~~~V~sv~~spdg~ 692 (792)
.. .+.+..-.. -.-.+.|+|....+.+-+....-.+++++.. +....++ ..+.|.|.||..||.
T Consensus 90 ~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~-~~G~IhCACWT~DG~ 168 (671)
T PF15390_consen 90 CPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIK-TSGLIHCACWTKDGQ 168 (671)
T ss_pred ccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEecc-CCceEEEEEecCcCC
Confidence 52 222222111 1233679999887777777665556666543 4444453 557899999999999
Q ss_pred EEEEEeCC--eEEEEECCC
Q 003840 693 LLASVSED--SVRVWTVGS 709 (792)
Q Consensus 693 ~Las~s~d--~I~IwDl~s 709 (792)
.|+++-.. .-+|||-..
T Consensus 169 RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 169 RLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred EEEEEeCCeEEEEEecCch
Confidence 88876665 788998643
No 432
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.63 E-value=3.3 Score=43.55 Aligned_cols=108 Identities=12% Similarity=0.063 Sum_probs=66.8
Q ss_pred CeEEEEEcCCCCEEEEEe---CCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEe-CCCCCce
Q 003840 514 KVICCHFSSDGKLLATGG---HDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD-ADNPGYS 589 (792)
Q Consensus 514 ~V~~lafspdg~~Lasgs---~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWd-l~s~~~~ 589 (792)
.+...++++||+.+|... ....++++... .....+. ....++.-.|++++...++...+...+++. ..++...
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--Ccceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 688999999999877765 33345555433 3333322 223788889999987777767666677774 2222222
Q ss_pred eEEeccc--CCCeEEEEEcCCCCeEEEEEeC--CCcEEE
Q 003840 590 LRTFMGH--SASVMSLDFHPNKDDLICSCDG--DGEIRY 624 (792)
Q Consensus 590 i~~~~~h--~~~V~sl~fspd~~~ll~sgs~--Dg~I~i 624 (792)
...+... ...|.++.++|||.++++.... ++.|.+
T Consensus 102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~v 140 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYV 140 (253)
T ss_pred eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEE
Confidence 2222211 1289999999999988776633 344444
No 433
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=95.57 E-value=1.1 Score=48.87 Aligned_cols=100 Identities=10% Similarity=0.082 Sum_probs=48.8
Q ss_pred CeEEEEEeCC-----CcEEEEEcCCCeeE---EEee---CCee-EEEEecCCCEEEEEEc-----CCeEEEEECCCCeEE
Q 003840 610 DDLICSCDGD-----GEIRYWSINNGSCT---RVFK---GGTA-QMRFQPHLGRYLAAAA-----ENVVSILDAETQACR 672 (792)
Q Consensus 610 ~~ll~sgs~D-----g~I~iwdl~~~~~~---~~~~---~~~~-~v~~sp~~~~lla~s~-----dg~I~i~D~~t~~~~ 672 (792)
+.+++.|+.+ ..+..||+.+.+.. ..+. .... ..+..-++..++.++. ...+.+||+.+.+-.
T Consensus 73 ~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~ 152 (323)
T TIGR03548 73 NGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEWF 152 (323)
T ss_pred CEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCee
Confidence 4566677654 35777787766531 1111 1111 1112223344444543 246888998876432
Q ss_pred E--EecCCCCCeEEEEEcCCCCEEEEEeCC-----eEEEEECCCC
Q 003840 673 L--SLQGHTKPIDSVCWDPSGELLASVSED-----SVRVWTVGSG 710 (792)
Q Consensus 673 ~--~l~~h~~~V~sv~~spdg~~Las~s~d-----~I~IwDl~s~ 710 (792)
. .+... ......+..-++++++.|+.+ .+.+||..+.
T Consensus 153 ~~~~~p~~-~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~ 196 (323)
T TIGR03548 153 ELPDFPGE-PRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKN 196 (323)
T ss_pred ECCCCCCC-CCCcceEEEECCEEEEEcCCCCccccceEEEecCCC
Confidence 2 12111 111222223456666766654 3567888764
No 434
>PRK13684 Ycf48-like protein; Provisional
Probab=95.56 E-value=4.7 Score=44.22 Aligned_cols=147 Identities=10% Similarity=0.072 Sum_probs=82.8
Q ss_pred CCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeE-EecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCee
Q 003840 554 SSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLR-TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC 632 (792)
Q Consensus 554 ~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~-~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~ 632 (792)
...+.++.+.+++.+++++ ..|.+.. ..+..+.... ....-...++++.+.+++. ++++ +..|.+++=..+.+..
T Consensus 172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~-s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~-~~~v-g~~G~~~~~s~d~G~s 247 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVS-SRGNFYS-TWEPGQTAWTPHQRNSSRRLQSMGFQPDGN-LWML-ARGGQIRFNDPDDLES 247 (334)
T ss_pred cceEEEEEECCCCeEEEEe-CCceEEE-EcCCCCCeEEEeeCCCcccceeeeEcCCCC-EEEE-ecCCEEEEccCCCCCc
Confidence 5678999999988666555 4554432 2222222222 2223456789999999876 4434 4467665433444432
Q ss_pred EEEee-------CCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEe---cCCCCCeEEEEEcCCCCEEEEEeCCeE
Q 003840 633 TRVFK-------GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSL---QGHTKPIDSVCWDPSGELLASVSEDSV 702 (792)
Q Consensus 633 ~~~~~-------~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l---~~h~~~V~sv~~spdg~~Las~s~d~I 702 (792)
-.... .....+.+.+++ .+++++.+|.|.. ....++.-... ..-....+.+.|..+++.+++|..+.|
T Consensus 248 W~~~~~~~~~~~~~l~~v~~~~~~-~~~~~G~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~i 325 (334)
T PRK13684 248 WSKPIIPEITNGYGYLDLAYRTPG-EIWAGGGNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQRGVL 325 (334)
T ss_pred cccccCCccccccceeeEEEcCCC-CEEEEcCCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEECCCceE
Confidence 22111 124556777754 4666667776654 33333322222 122235778888888888888877776
Q ss_pred EEEE
Q 003840 703 RVWT 706 (792)
Q Consensus 703 ~IwD 706 (792)
..|+
T Consensus 326 l~~~ 329 (334)
T PRK13684 326 LRYV 329 (334)
T ss_pred EEec
Confidence 6665
No 435
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.52 E-value=0.098 Score=63.07 Aligned_cols=143 Identities=11% Similarity=0.021 Sum_probs=93.4
Q ss_pred CCEEEEEECCCCCeEEEE--eCCCcEEEEeCCCCCce----eE------EecccCCCeEEEEEcCCCCeEEEEEeCCCcE
Q 003840 555 SLITDVRFSPSMPRLATS--SFDKTVRVWDADNPGYS----LR------TFMGHSASVMSLDFHPNKDDLICSCDGDGEI 622 (792)
Q Consensus 555 ~~V~~i~fspdg~~Lasg--s~Dg~V~IWdl~s~~~~----i~------~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I 622 (792)
-.|..+...+|+...++. +.+-.|.+||+++-... .+ +.........++.|+|.-...++.+..|+.|
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl 180 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL 180 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence 345566666776654443 44457899999752111 11 1112234466788988766666778889999
Q ss_pred EEEEcCCCeeE--E-EeeCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecC----CCCCeEEEEEcCCCCEEE
Q 003840 623 RYWSINNGSCT--R-VFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQG----HTKPIDSVCWDPSGELLA 695 (792)
Q Consensus 623 ~iwdl~~~~~~--~-~~~~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~----h~~~V~sv~~spdg~~La 695 (792)
++..+...... . .+.....+++|+|.|..+++|-..|.+.-|...-. ....+.+ ....|.||+|...-.+++
T Consensus 181 ~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~le-ik~~ip~Pp~~e~yrvl~v~Wl~t~eflv 259 (1405)
T KOG3630|consen 181 RVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLE-IKSEIPEPPVEENYRVLSVTWLSTQEFLV 259 (1405)
T ss_pred hhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecccc-eeecccCCCcCCCcceeEEEEecceeEEE
Confidence 99877643221 1 23456788999999999999999999998876433 2222221 236799999998888777
Q ss_pred EEe
Q 003840 696 SVS 698 (792)
Q Consensus 696 s~s 698 (792)
+-+
T Consensus 260 vy~ 262 (1405)
T KOG3630|consen 260 VYG 262 (1405)
T ss_pred Eec
Confidence 543
No 436
>PLN02153 epithiospecifier protein
Probab=95.49 E-value=2.2 Score=46.85 Aligned_cols=108 Identities=13% Similarity=0.124 Sum_probs=52.2
Q ss_pred CCCEEEEEeCC-------CeEEEEECCCCceeEEec--c-CCC---CEEEEEECCCCCeEEEEeCC-----CcEEEEeCC
Q 003840 523 DGKLLATGGHD-------KKAVLWHTDTLKSKTNLE--E-HSS---LITDVRFSPSMPRLATSSFD-----KTVRVWDAD 584 (792)
Q Consensus 523 dg~~Lasgs~D-------g~I~vWdl~t~~~~~~l~--~-h~~---~V~~i~fspdg~~Lasgs~D-----g~V~IWdl~ 584 (792)
++++++.|+.+ ..+.+||+.+.+-..... . ... ....+.+ ++++++.|+.+ ..|.+||+.
T Consensus 32 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~ 109 (341)
T PLN02153 32 GDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV--GTKLYIFGGRDEKREFSDFYSYDTV 109 (341)
T ss_pred CCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEE--CCEEEEECCCCCCCccCcEEEEECC
Confidence 34566666653 357888887654322111 0 010 1222333 45677777754 247788887
Q ss_pred CCCcee-EEecc---cCCC-eEEEEEcCCCCeEEEEEeCC-----------CcEEEEEcCCCeeEE
Q 003840 585 NPGYSL-RTFMG---HSAS-VMSLDFHPNKDDLICSCDGD-----------GEIRYWSINNGSCTR 634 (792)
Q Consensus 585 s~~~~i-~~~~~---h~~~-V~sl~fspd~~~ll~sgs~D-----------g~I~iwdl~~~~~~~ 634 (792)
+..... ..+.. .... -.+++.. ++.+++.|+.+ ..|.+||+++.+-..
T Consensus 110 t~~W~~~~~~~~~~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~ 173 (341)
T PLN02153 110 KNEWTFLTKLDEEGGPEARTFHSMASD--ENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQ 173 (341)
T ss_pred CCEEEEeccCCCCCCCCCceeeEEEEE--CCEEEEECCccCCCccCCCcccceEEEEECCCCeEee
Confidence 632211 11100 1111 1222222 24566666643 247788988766543
No 437
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=95.44 E-value=5.6 Score=44.24 Aligned_cols=186 Identities=10% Similarity=0.002 Sum_probs=96.6
Q ss_pred eEEEEeCCCcEEEEeCCCCCceeEEeccc--CCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCCe---eE
Q 003840 568 RLATSSFDKTVRVWDADNPGYSLRTFMGH--SASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGT---AQ 642 (792)
Q Consensus 568 ~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h--~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~---~~ 642 (792)
.++++..||.|.-.|.++. ..+...... ...+.+-.+..+|+ |+.++.++.++.+|.++++.+..++... ..
T Consensus 70 ~v~~~~~~G~i~A~d~~~g-~~~W~~~~~~~~~~~~~~~~~~~G~--i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~ 146 (370)
T COG1520 70 TVYVGTRDGNIFALNPDTG-LVKWSYPLLGAVAQLSGPILGSDGK--IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYA 146 (370)
T ss_pred eEEEecCCCcEEEEeCCCC-cEEecccCcCcceeccCceEEeCCe--EEEecccceEEEEECCCCcEEEEEecCCCeEEe
Confidence 5556678888888888763 322211111 12233333333554 5578889999999999999888776555 11
Q ss_pred EEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCC---CeEEEEEcCCCCEEEEEeC--C-eEEEEECCCCCCcceE
Q 003840 643 MRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTK---PIDSVCWDPSGELLASVSE--D-SVRVWTVGSGSEGECV 716 (792)
Q Consensus 643 v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~---~V~sv~~spdg~~Las~s~--d-~I~IwDl~s~~~~~~i 716 (792)
-........++..+.++.+...|..+++.+........ .+..--...++. ++.+.. + .+.-+|..++...-..
T Consensus 147 ~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~-vy~~~~~~~~~~~a~~~~~G~~~w~~ 225 (370)
T COG1520 147 SPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGT-VYVGSDGYDGILYALNAEDGTLKWSQ 225 (370)
T ss_pred cCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecce-EEEecCCCcceEEEEEccCCcEeeee
Confidence 11122334555555789999999999988776543221 111111112333 333333 3 4555666555221110
Q ss_pred EE-eecCCC------ceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE
Q 003840 717 HE-LSCNGN------KFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM 758 (792)
Q Consensus 717 ~~-~~~~~~------~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~ 758 (792)
+. ...... .+..-...-++ .++.++.++.+..+|..+++.+
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~v~v~~-~~~~~~~~g~~~~l~~~~G~~~ 273 (370)
T COG1520 226 KVSQTIGRTAISTTPAVDGGPVYVDG-GVYAGSYGGKLLCLDADTGELI 273 (370)
T ss_pred eeecccCcccccccccccCceEEECC-cEEEEecCCeEEEEEcCCCceE
Confidence 00 000000 01100111122 2466667777888888888877
No 438
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=95.41 E-value=3.7 Score=44.00 Aligned_cols=163 Identities=12% Similarity=0.097 Sum_probs=94.2
Q ss_pred cEEEEEcCCCeeEEEeeC---------CeeEEEEecCC-----CEEEEEEc-CCeEEEEECCCCeEEEEecCCC------
Q 003840 621 EIRYWSINNGSCTRVFKG---------GTAQMRFQPHL-----GRYLAAAA-ENVVSILDAETQACRLSLQGHT------ 679 (792)
Q Consensus 621 ~I~iwdl~~~~~~~~~~~---------~~~~v~~sp~~-----~~lla~s~-dg~I~i~D~~t~~~~~~l~~h~------ 679 (792)
.|.+||+++++.++.+.- ....+++.... .+++.+.. .+.|.|||+.+++..+.+..+.
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 678889999888877642 23445665532 23333333 4699999999987666544321
Q ss_pred -------------CCeEEEEEcC---CCCEEEEEeCCeEEEEECCCC-----CC------cceEEEeecCCCceEEEEEe
Q 003840 680 -------------KPIDSVCWDP---SGELLASVSEDSVRVWTVGSG-----SE------GECVHELSCNGNKFHSCVFH 732 (792)
Q Consensus 680 -------------~~V~sv~~sp---dg~~Las~s~d~I~IwDl~s~-----~~------~~~i~~~~~~~~~i~si~fs 732 (792)
..+..++.++ ++++|+...-...++|.+.+. .. ...+..+-........++++
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D 194 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAID 194 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEE
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCccccccccccccceeccccCCCCceEEEC
Confidence 2256666655 667777766554445544321 11 11222222222456778899
Q ss_pred CCCCEEEEEEcCCeEEEEECCC-----CcEE-EEccc-CCCeEEEEEeC--CCCEEEEEe
Q 003840 733 PTYPSLLVIGCYQSLELWNMSE-----NKTM-TLTAH-EGLIAALAVST--ETGYVASAS 783 (792)
Q Consensus 733 pdg~~L~sgs~dg~I~IwDl~~-----~~~~-~~~~h-~~~V~sl~fsp--dg~~LaSgs 783 (792)
++|..+++--..+.|..|+..+ ...+ ..... -..+.++.+.+ +|.+.+.++
T Consensus 195 ~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~sn 254 (287)
T PF03022_consen 195 PNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLSN 254 (287)
T ss_dssp TTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE-
T ss_pred CCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEEC
Confidence 9988888888888999999987 2222 22222 35788999998 777666553
No 439
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.36 E-value=0.51 Score=47.00 Aligned_cols=176 Identities=14% Similarity=0.095 Sum_probs=96.5
Q ss_pred CCCeEEEEeC--CCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCCeeE
Q 003840 565 SMPRLATSSF--DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQ 642 (792)
Q Consensus 565 dg~~Lasgs~--Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~ 642 (792)
++.+|.+.+. ...|++||++++ ..+....-....+..=-...-++.+..-.-.||.-.++|.++.+++..+.-....
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~g-q~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~GeG 133 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTG-QEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGEG 133 (262)
T ss_pred CCEEEEeccccccceeEEEeccCc-eEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCCcc
Confidence 4556666554 346999999974 3333322111222221112223444445567899999999999988877654444
Q ss_pred EEEecCCCEEEEEEcCCeEEEEECCCCeEEE----EecC-CCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcce-
Q 003840 643 MRFQPHLGRYLAAAAENVVSILDAETQACRL----SLQG-HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGEC- 715 (792)
Q Consensus 643 v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~----~l~~-h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~- 715 (792)
-....++..++.+.....+..-|.++..... ++.+ .-..++-+.|- +|.+.|-.-.. .|...|..+++....
T Consensus 134 WgLt~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV~~wi 212 (262)
T COG3823 134 WGLTSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGRVVAWI 212 (262)
T ss_pred eeeecCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCCcEEEEE
Confidence 4555666778888888888888887654332 2222 11223334442 45544443333 455555555421111
Q ss_pred --------EEEeecCCCceEEEEEeCCCCEEEEEE
Q 003840 716 --------VHELSCNGNKFHSCVFHPTYPSLLVIG 742 (792)
Q Consensus 716 --------i~~~~~~~~~i~si~fspdg~~L~sgs 742 (792)
+..-..+.+....+++.|+...|+..+
T Consensus 213 dlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 213 DLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred EccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 111122345678889999885555544
No 440
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=95.27 E-value=0.79 Score=51.02 Aligned_cols=104 Identities=11% Similarity=0.037 Sum_probs=60.4
Q ss_pred CCeEEEEEcCCCCEEEEEeCCeEEEE-ECCCCC----Ccc-eEEEeecC----CCceEEEEEeCCCCEEEEEEcC-----
Q 003840 680 KPIDSVCWDPSGELLASVSEDSVRVW-TVGSGS----EGE-CVHELSCN----GNKFHSCVFHPTYPSLLVIGCY----- 744 (792)
Q Consensus 680 ~~V~sv~~spdg~~Las~s~d~I~Iw-Dl~s~~----~~~-~i~~~~~~----~~~i~si~fspdg~~L~sgs~d----- 744 (792)
...+.++|.++| +++ ++...|..| |..... ..+ .+..+... ......++|.|||.+.++.+..
T Consensus 72 ~~p~Gi~~~~~G-lyV-~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~ 149 (367)
T TIGR02604 72 SMVTGLAVAVGG-VYV-ATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKV 149 (367)
T ss_pred CCccceeEecCC-EEE-eCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCcee
Confidence 345788998888 444 444455544 443211 112 22223222 3447789999999866655521
Q ss_pred --------------CeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEeCC
Q 003840 745 --------------QSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHD 785 (792)
Q Consensus 745 --------------g~I~IwDl~~~~~~~~~~h~~~V~sl~fspdg~~LaSgs~D 785 (792)
+.|.-+|..+++...+...-.....++|+++|+++++-..+
T Consensus 150 ~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 150 TRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred ccCCCccCcccccCceEEEEecCCCeEEEEecCcCCCccceECCCCCEEEEccCC
Confidence 34666666665544333333446789999999988765433
No 441
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=95.21 E-value=5 Score=47.31 Aligned_cols=152 Identities=13% Similarity=0.181 Sum_probs=80.7
Q ss_pred eeCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEE--EEecC-CCCCeEEEEEcC------CCCEEEEEeC---C--e
Q 003840 636 FKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACR--LSLQG-HTKPIDSVCWDP------SGELLASVSE---D--S 701 (792)
Q Consensus 636 ~~~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~--~~l~~-h~~~V~sv~~sp------dg~~Las~s~---d--~ 701 (792)
++..+..+.+..++..+++...+|.|.+||....... ..+.. +...|.--+|.+ ...++++.+. + .
T Consensus 128 l~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~ 207 (670)
T PF10395_consen 128 LDDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLS 207 (670)
T ss_pred cccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEE
Confidence 4567778899999999999999999999999332211 12221 222111112222 2234444333 2 7
Q ss_pred EEEEECCCCCCcceEEEee---cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE---EEc---ccC-CCeEEEE
Q 003840 702 VRVWTVGSGSEGECVHELS---CNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM---TLT---AHE-GLIAALA 771 (792)
Q Consensus 702 I~IwDl~s~~~~~~i~~~~---~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~---~~~---~h~-~~V~sl~ 771 (792)
.+++.+... ...+.++. .+......+.|+-....|+.- .+++|.+|++...+.. .+. ... ..+.++.
T Consensus 208 ykL~~l~~~--~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l-~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~ 284 (670)
T PF10395_consen 208 YKLISLSNE--SSSIFELSSTILENFGLEDSKFCYQFGKLYQL-SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLK 284 (670)
T ss_pred EEEEEeccC--CcceEEeehheeccCCcccceEEEeCCEEEEE-eCCEEEEEEcCCceEEEEEEechhhccccccceEee
Confidence 888888221 12222222 233334444454444445444 6779999999877654 222 111 2344444
Q ss_pred EeCCCCEEEEEeCCCcEEEeC
Q 003840 772 VSTETGYVASASHDKFVKLWK 792 (792)
Q Consensus 772 fspdg~~LaSgs~DG~I~IWd 792 (792)
--...+.|++ .++.|++.|
T Consensus 285 ~~s~nRvLLs--~~nkIyLld 303 (670)
T PF10395_consen 285 PPSPNRVLLS--VNNKIYLLD 303 (670)
T ss_pred cCCCCeEEEE--cCCEEEEEe
Confidence 2223344443 356777764
No 442
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.05 E-value=0.07 Score=40.32 Aligned_cols=33 Identities=21% Similarity=0.457 Sum_probs=29.3
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Q 003840 512 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK 545 (792)
Q Consensus 512 ~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~ 545 (792)
...|.+++|+|..++||.|+.+|.|.||.+ ++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence 456999999999999999999999999998 444
No 443
>PLN02193 nitrile-specifier protein
Probab=95.05 E-value=8.8 Score=44.28 Aligned_cols=171 Identities=8% Similarity=0.001 Sum_probs=81.5
Q ss_pred CeEEEEEeCC-------CcEEEEEcCCCeeEEEee---CCe---eEEE-EecCCCEEEEEEcC-----CeEEEEECCCCe
Q 003840 610 DDLICSCDGD-------GEIRYWSINNGSCTRVFK---GGT---AQMR-FQPHLGRYLAAAAE-----NVVSILDAETQA 670 (792)
Q Consensus 610 ~~ll~sgs~D-------g~I~iwdl~~~~~~~~~~---~~~---~~v~-~sp~~~~lla~s~d-----g~I~i~D~~t~~ 670 (792)
+.+++.|+.+ ..+.+||+++.+....-. .+. ...+ ...++..++.++.+ +.+.+||+.+.+
T Consensus 176 ~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~ 255 (470)
T PLN02193 176 NKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNE 255 (470)
T ss_pred CEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCCE
Confidence 4566666643 347788888765443211 010 1111 22233344445443 468899988764
Q ss_pred EEEE--ec--CCCCCeEEEEEcCCCCEEEEEeCC------eEEEEECCCCCCcceEEEe---ecCCCceEEEEEeCCCCE
Q 003840 671 CRLS--LQ--GHTKPIDSVCWDPSGELLASVSED------SVRVWTVGSGSEGECVHEL---SCNGNKFHSCVFHPTYPS 737 (792)
Q Consensus 671 ~~~~--l~--~h~~~V~sv~~spdg~~Las~s~d------~I~IwDl~s~~~~~~i~~~---~~~~~~i~si~fspdg~~ 737 (792)
-... +. .....-.+++. -++++++.|+.+ .+.+||+.+.. ...+... ...... ..++ .-+++.
T Consensus 256 W~~l~~~~~~P~~R~~h~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~~-W~~~~~~~~~~~~R~~-~~~~-~~~gki 331 (470)
T PLN02193 256 WKLLTPVEEGPTPRSFHSMAA-DEENVYVFGGVSATARLKTLDSYNIVDKK-WFHCSTPGDSFSIRGG-AGLE-VVQGKV 331 (470)
T ss_pred EEEcCcCCCCCCCccceEEEE-ECCEEEEECCCCCCCCcceEEEEECCCCE-EEeCCCCCCCCCCCCC-cEEE-EECCcE
Confidence 3321 11 01111122222 345566665532 46778876531 1111110 000111 1222 235666
Q ss_pred EEEEEcC----CeEEEEECCCCcEEEEccc-----CCCeEEEEEeCCCCEEEEEeCC
Q 003840 738 LLVIGCY----QSLELWNMSENKTMTLTAH-----EGLIAALAVSTETGYVASASHD 785 (792)
Q Consensus 738 L~sgs~d----g~I~IwDl~~~~~~~~~~h-----~~~V~sl~fspdg~~LaSgs~D 785 (792)
+++++.+ ..|.+||+.+.+...+... .....++ ..-++++++.|+.+
T Consensus 332 yviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~-~~~~~~iyv~GG~~ 387 (470)
T PLN02193 332 WVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFAS-AAVGKHIVIFGGEI 387 (470)
T ss_pred EEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEE-EEECCEEEEECCcc
Confidence 6777655 4689999998876654322 1111222 23356777777753
No 444
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=95.00 E-value=3.3 Score=41.84 Aligned_cols=49 Identities=10% Similarity=0.038 Sum_probs=36.4
Q ss_pred CEEEEEeCCCeEEEEECC--CCceeEEeccCCCCEEEEEECCCCCeEEEEeC
Q 003840 525 KLLATGGHDKKAVLWHTD--TLKSKTNLEEHSSLITDVRFSPSMPRLATSSF 574 (792)
Q Consensus 525 ~~Lasgs~Dg~I~vWdl~--t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~ 574 (792)
+.|+.+...++|.+|++. ......++..- +.|..+.++..|+||+|--.
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~ 79 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEE 79 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEe
Confidence 355555667889999988 33445555543 78999999999999999743
No 445
>KOG3598 consensus Thyroid hormone receptor-associated protein complex, subunit TRAP230 [Transcription]
Probab=94.96 E-value=0.018 Score=69.95 Aligned_cols=7 Identities=29% Similarity=0.373 Sum_probs=3.5
Q ss_pred HhhcCCC
Q 003840 237 AQQNLTS 243 (792)
Q Consensus 237 ~~~~~~~ 243 (792)
-|.+|.+
T Consensus 2198 lQ~qLs~ 2204 (2220)
T KOG3598|consen 2198 LQMQLSA 2204 (2220)
T ss_pred HHHHhhh
Confidence 4555544
No 446
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=94.81 E-value=0.01 Score=65.34 Aligned_cols=141 Identities=12% Similarity=0.181 Sum_probs=102.9
Q ss_pred CCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEE
Q 003840 555 SLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR 634 (792)
Q Consensus 555 ~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~ 634 (792)
..-....|.+.+.-++.++.+-.|..||-.. ..+... ...+...+++|..+++.+++.+-..+.+.+||+.+...-.
T Consensus 35 v~pi~~~w~~e~~nlavaca~tiv~~YD~ag--q~~le~-n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqq 111 (615)
T KOG2247|consen 35 VGPIIHRWRPEGHNLAVACANTIVIYYDKAG--QVILEL-NPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQ 111 (615)
T ss_pred cccceeeEecCCCceehhhhhhHHHhhhhhc--ceeccc-CCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHH
Confidence 3344557888877799999999999998764 222222 2445567889988888888888899999999998653222
Q ss_pred EeeCC---eeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEe
Q 003840 635 VFKGG---TAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVS 698 (792)
Q Consensus 635 ~~~~~---~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s 698 (792)
.-.+. ..-+.|++....++.+...|.+.||...+.+.+.....|...+++++|.+.+..+..++
T Consensus 112 LE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil~dc 178 (615)
T KOG2247|consen 112 LESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVILCDC 178 (615)
T ss_pred HhccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccceeeecCc
Confidence 11111 12267888888888888899999999988877776666899999999998776554433
No 447
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.75 E-value=3.6 Score=48.33 Aligned_cols=191 Identities=13% Similarity=0.079 Sum_probs=91.1
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeE
Q 003840 512 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLR 591 (792)
Q Consensus 512 ~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~ 591 (792)
.+.+.++..+|....=+. +.--.|+||++. |..+..+......+-.+.|+.+. .|++...||+|+||++-. ..+.
T Consensus 43 ~gGpIAV~r~p~~~~~~~-~a~~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~g--e~ie 117 (829)
T KOG2280|consen 43 FGGPIAVTRSPSKLVPLY-SARPYIRIFNIS-GQLLGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLLG--EFIE 117 (829)
T ss_pred cCCceEEEeccccccccc-ccceeEEEEecc-ccchHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecch--hhhc
Confidence 344555555553211111 233457888764 45555544444478899999765 677788999999999974 2222
Q ss_pred Ee----cccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeC------CeeEEE-EecCCC-EEEEEEc-C
Q 003840 592 TF----MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG------GTAQMR-FQPHLG-RYLAAAA-E 658 (792)
Q Consensus 592 ~~----~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~------~~~~v~-~sp~~~-~lla~s~-d 658 (792)
.+ ......|..+.|..+| ++ .-..+|.|.+.+-......+.++. ...+-. +.+... .++..-. .
T Consensus 118 ~~svg~e~~~~~I~ec~~f~~G--Va-vlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~ 194 (829)
T KOG2280|consen 118 SNSVGFESQMSDIVECRFFHNG--VA-VLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVA 194 (829)
T ss_pred ccccccccccCceeEEEEecCc--eE-EEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechh
Confidence 21 1222345555554444 22 223355554433222222222221 111211 112111 1111111 0
Q ss_pred CeEEEEECCCC-eEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCC
Q 003840 659 NVVSILDAETQ-ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSG 710 (792)
Q Consensus 659 g~I~i~D~~t~-~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~ 710 (792)
-...++-.+.. .....+......+..+..+|+.++|+.-... .|.+-++...
T Consensus 195 v~~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~ 248 (829)
T KOG2280|consen 195 VGLHICQVEESRVQLHALSWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLS 248 (829)
T ss_pred hhhcccceecccccccccCCCCceEEEEEEcCCcceEEEEecCCcEEEEecchh
Confidence 00111111111 1111122223457778899999999887766 7777766543
No 448
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=94.66 E-value=1.5 Score=49.92 Aligned_cols=264 Identities=14% Similarity=0.092 Sum_probs=124.1
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCC-CCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcee
Q 003840 512 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHS-SLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSL 590 (792)
Q Consensus 512 ~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~-~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i 590 (792)
..+|..+.|+..| .|.+|+.|| +..||..+++.+..-.... ..|..+..+..+ .|.+|+++| |++.+.+. ..+
T Consensus 164 d~~V~aLv~D~~g-~lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~al~~d~qg-~LWVGTdqG-v~~~e~~G--~~~ 237 (671)
T COG3292 164 DTPVVALVFDANG-RLWVGTPDG-LSYFDAGRGKALQLASPPLDKAINALIADVQG-RLWVGTDQG-VYLQEAEG--WRA 237 (671)
T ss_pred CccceeeeeeccC-cEEEecCCc-ceEEccccceEEEcCCCcchhhHHHHHHHhcC-cEEEEeccc-eEEEchhh--ccc
Confidence 4568888888888 566677776 5667877777665544333 556666555444 677888888 77777764 111
Q ss_pred EEe--cccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeC--Ce---eEEEEecCCCEEEEEEcCCeEEE
Q 003840 591 RTF--MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG--GT---AQMRFQPHLGRYLAAAAENVVSI 663 (792)
Q Consensus 591 ~~~--~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~--~~---~~v~~sp~~~~lla~s~dg~I~i 663 (792)
... .-....|..+.-...|. +..|+..|..+.---+.+-.+...+. .. ..+ +....+.+.+++.++.+++
T Consensus 238 sn~~~~lp~~~I~ll~qD~qG~--lWiGTenGl~r~~l~rq~Lq~~~~~~~l~~S~vnsL-~~D~dGsLWv~t~~giv~~ 314 (671)
T COG3292 238 SNWGPMLPSGNILLLVQDAQGE--LWIGTENGLWRTRLPRQGLQIPLSKMHLGVSTVNSL-WLDTDGSLWVGTYGGIVRY 314 (671)
T ss_pred cccCCCCcchheeeeecccCCC--EEEeecccceeEecCCCCccccccccCCccccccce-eeccCCCEeeeccCceEEE
Confidence 111 11233344444333333 33455454433222221111111111 11 112 2233356667777776666
Q ss_pred EECCCCeEEEEecCCCCC-eEEEEEcC---CCCEEEEEeCCeEEEEECCCCCCcceEEEe-ecCCCceEEEEEeCCCCEE
Q 003840 664 LDAETQACRLSLQGHTKP-IDSVCWDP---SGELLASVSEDSVRVWTVGSGSEGECVHEL-SCNGNKFHSCVFHPTYPSL 738 (792)
Q Consensus 664 ~D~~t~~~~~~l~~h~~~-V~sv~~sp---dg~~Las~s~d~I~IwDl~s~~~~~~i~~~-~~~~~~i~si~fspdg~~L 738 (792)
-+.+- .....+...++. +-.++..| +.......+.+.+.+-+-.++ ..++.. ......|+..++..++ .+
T Consensus 315 ~~a~w-~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~L~van~stG---~~v~sv~q~Rg~nit~~~~d~~g-~l 389 (671)
T COG3292 315 LTADW-KRMAVINDSDGGVSQYEAVAPALLSWGVRQLNSIGELMVANGSTG---ELVRSVHQLRGMNITTTLEDSRG-RL 389 (671)
T ss_pred ecchh-hheeeeecCCCchhhhhccCchhcccceeeccccceEEEecCCCC---cEEEEeeeccccccchhhhccCC-cE
Confidence 54431 111111111110 11111111 000111111111122222222 222211 1122345556666644 46
Q ss_pred EEEEcCCeEEEEECCC-CcEEEEc--ccCCCeEEEEEeCCCCEEEEEeCCCcEEE
Q 003840 739 LVIGCYQSLELWNMSE-NKTMTLT--AHEGLIAALAVSTETGYVASASHDKFVKL 790 (792)
Q Consensus 739 ~sgs~dg~I~IwDl~~-~~~~~~~--~h~~~V~sl~fspdg~~LaSgs~DG~I~I 790 (792)
..++..+-+..|+..+ +..+... ...+.|..+.=.|+++ |..|+.+|.+++
T Consensus 390 Wlgs~q~GLsrl~n~n~~avlde~agl~ss~V~aived~dns-LWIGTs~Glvk~ 443 (671)
T COG3292 390 WLGSMQNGLSRLDNKNEWAVLDEDAGLPSSEVSAIVEDPDNS-LWIGTSGGLVKR 443 (671)
T ss_pred EEEecccchhhhccCCcccccccccCCcccceeeeeecCCCC-EEEeccCCeEec
Confidence 6666665666677666 3333222 2356788888888888 666778887753
No 449
>PHA02790 Kelch-like protein; Provisional
Probab=94.55 E-value=0.98 Score=52.24 Aligned_cols=177 Identities=7% Similarity=-0.032 Sum_probs=82.8
Q ss_pred CCCEEEEEeCCC-----eEEEEECCCCceeE--EeccCCCCEEEEEECCCCCeEEEEeCC--CcEEEEeCCCCCceeEEe
Q 003840 523 DGKLLATGGHDK-----KAVLWHTDTLKSKT--NLEEHSSLITDVRFSPSMPRLATSSFD--KTVRVWDADNPGYSLRTF 593 (792)
Q Consensus 523 dg~~Lasgs~Dg-----~I~vWdl~t~~~~~--~l~~h~~~V~~i~fspdg~~Lasgs~D--g~V~IWdl~s~~~~i~~~ 593 (792)
++.++++||.++ .+..||..+.+... .+.........+. -++.+.++|+.+ ..+..||..++.. ...
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~--~~~~iYviGG~~~~~sve~ydp~~n~W--~~~ 346 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP--ANNKLYVVGGLPNPTSVERWFHGDAAW--VNM 346 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE--ECCEEEEECCcCCCCceEEEECCCCeE--EEC
Confidence 344566676542 46678877654322 2221111122222 367777788764 3578888765322 121
Q ss_pred cccCCCe--EEEEEcCCCCeEEEEEeCCC---cEEEEEcCCCeeEEEee--CCeeEEEEecCCCEEEEEEcCCeEEEEEC
Q 003840 594 MGHSASV--MSLDFHPNKDDLICSCDGDG---EIRYWSINNGSCTRVFK--GGTAQMRFQPHLGRYLAAAAENVVSILDA 666 (792)
Q Consensus 594 ~~h~~~V--~sl~fspd~~~ll~sgs~Dg---~I~iwdl~~~~~~~~~~--~~~~~v~~sp~~~~lla~s~dg~I~i~D~ 666 (792)
..-.... .+++.. ++.+.+.|+.++ .+..||.++......-. .+....+...-++.|++.+ |.+.+||.
T Consensus 347 ~~l~~~r~~~~~~~~--~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~G--G~~e~ydp 422 (480)
T PHA02790 347 PSLLKPRCNPAVASI--NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVG--RNAEFYCE 422 (480)
T ss_pred CCCCCCCcccEEEEE--CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEEC--CceEEecC
Confidence 1111111 122222 345666777553 47788888766543211 1111111222334555544 45778888
Q ss_pred CCCeEEE--EecCCCCCeEEEEEcCCCCEEEEEeCC------eEEEEECCC
Q 003840 667 ETQACRL--SLQGHTKPIDSVCWDPSGELLASVSED------SVRVWTVGS 709 (792)
Q Consensus 667 ~t~~~~~--~l~~h~~~V~sv~~spdg~~Las~s~d------~I~IwDl~s 709 (792)
++.+-.. .+....... +++. -+|++.+.|+.+ .|.+||..+
T Consensus 423 ~~~~W~~~~~m~~~r~~~-~~~v-~~~~IYviGG~~~~~~~~~ve~Yd~~~ 471 (480)
T PHA02790 423 SSNTWTLIDDPIYPRDNP-ELII-VDNKLLLIGGFYRGSYIDTIEVYNNRT 471 (480)
T ss_pred CCCcEeEcCCCCCCcccc-EEEE-ECCEEEEECCcCCCcccceEEEEECCC
Confidence 7654322 221111112 2222 356666666532 355555543
No 450
>PLN02193 nitrile-specifier protein
Probab=94.54 E-value=3.8 Score=47.29 Aligned_cols=148 Identities=6% Similarity=-0.069 Sum_probs=72.4
Q ss_pred CeEEEEEeCC-----CcEEEEEcCCCeeEEEeeC-----Cee-EEEEecCCCEEEEEEcC-----CeEEEEECCCCeEEE
Q 003840 610 DDLICSCDGD-----GEIRYWSINNGSCTRVFKG-----GTA-QMRFQPHLGRYLAAAAE-----NVVSILDAETQACRL 673 (792)
Q Consensus 610 ~~ll~sgs~D-----g~I~iwdl~~~~~~~~~~~-----~~~-~v~~sp~~~~lla~s~d-----g~I~i~D~~t~~~~~ 673 (792)
+.+++.|+.+ ..+.+||+.+.+....-.. +.. ......++..++.++.+ ..+.+||+.+.+-..
T Consensus 229 ~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~ 308 (470)
T PLN02193 229 STLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFH 308 (470)
T ss_pred CEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEe
Confidence 4566677654 3588899988765443211 111 11122233444455443 357788887764322
Q ss_pred Eec-----CCCCCeEEEEEcCCCCEEEEEeC-----CeEEEEECCCCCCcceEEEee-cCCCceEEEEEeCCCCEEEEEE
Q 003840 674 SLQ-----GHTKPIDSVCWDPSGELLASVSE-----DSVRVWTVGSGSEGECVHELS-CNGNKFHSCVFHPTYPSLLVIG 742 (792)
Q Consensus 674 ~l~-----~h~~~V~sv~~spdg~~Las~s~-----d~I~IwDl~s~~~~~~i~~~~-~~~~~i~si~fspdg~~L~sgs 742 (792)
.-. ..... .+++. -++++++.++. +.+.+||+.+.. ...+.... .........+..-+++.+++|+
T Consensus 309 ~~~~~~~~~~R~~-~~~~~-~~gkiyviGG~~g~~~~dv~~yD~~t~~-W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG 385 (470)
T PLN02193 309 CSTPGDSFSIRGG-AGLEV-VQGKVWVVYGFNGCEVDDVHYYDPVQDK-WTQVETFGVRPSERSVFASAAVGKHIVIFGG 385 (470)
T ss_pred CCCCCCCCCCCCC-cEEEE-ECCcEEEEECCCCCccCceEEEECCCCE-EEEeccCCCCCCCcceeEEEEECCEEEEECC
Confidence 110 00111 12222 25666665553 258899987642 22222110 0111111222233556666776
Q ss_pred cC--------------CeEEEEECCCCcEEEE
Q 003840 743 CY--------------QSLELWNMSENKTMTL 760 (792)
Q Consensus 743 ~d--------------g~I~IwDl~~~~~~~~ 760 (792)
.. ..+.+||+.+.....+
T Consensus 386 ~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~ 417 (470)
T PLN02193 386 EIAMDPLAHVGPGQLTDGTFALDTETLQWERL 417 (470)
T ss_pred ccCCccccccCccceeccEEEEEcCcCEEEEc
Confidence 42 2588999988876543
No 451
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=94.46 E-value=1.3 Score=44.70 Aligned_cols=136 Identities=18% Similarity=0.219 Sum_probs=78.2
Q ss_pred CEEEEEEcCCeEEEEECCC--CeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-------eEEE---EECCCC-CCcceE
Q 003840 650 GRYLAAAAENVVSILDAET--QACRLSLQGHTKPIDSVCWDPSGELLASVSED-------SVRV---WTVGSG-SEGECV 716 (792)
Q Consensus 650 ~~lla~s~dg~I~i~D~~t--~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-------~I~I---wDl~s~-~~~~~i 716 (792)
+.++++.....|.+|++.. ...+.+|.. -+.|..+.++..|+||++--++ .+|+ |+.... +....+
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 5666768888999999883 355666653 4789999999999999986543 3444 444311 111111
Q ss_pred EEeec---------------------CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcE-------EEE----cc-c
Q 003840 717 HELSC---------------------NGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKT-------MTL----TA-H 763 (792)
Q Consensus 717 ~~~~~---------------------~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~-------~~~----~~-h 763 (792)
.+.+ -...+.+++..|-...|++|+. +++.+|.+..... +.+ .. |
T Consensus 108 -RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~-~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~ 185 (215)
T PF14761_consen 108 -RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCG-NKLVLFTLKYQTIQSEKFSFLDFERSLIDHI 185 (215)
T ss_pred -EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcC-CEEEEEEEEEEEEecccccEEechhhhhhee
Confidence 1111 1234556666675555666654 5788887654332 111 11 2
Q ss_pred CC-CeEEEEEeCCCCEEEEEeCCCcEEEe
Q 003840 764 EG-LIAALAVSTETGYVASASHDKFVKLW 791 (792)
Q Consensus 764 ~~-~V~sl~fspdg~~LaSgs~DG~I~IW 791 (792)
.+ .+..++|. +.|||..++ -.++++
T Consensus 186 ~~~~p~~v~ic--~~yiA~~s~-~ev~Vl 211 (215)
T PF14761_consen 186 DNFKPTQVAIC--EGYIAVMSD-LEVLVL 211 (215)
T ss_pred cCceEEEEEEE--eeEEEEecC-CEEEEE
Confidence 22 24455554 568887764 456554
No 452
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=94.37 E-value=4.9 Score=44.18 Aligned_cols=41 Identities=15% Similarity=0.137 Sum_probs=23.1
Q ss_pred eEEEEECCCCcEEEEcccCCC-eEEEEEeCCCCEEEEEeCCC
Q 003840 746 SLELWNMSENKTMTLTAHEGL-IAALAVSTETGYVASASHDK 786 (792)
Q Consensus 746 ~I~IwDl~~~~~~~~~~h~~~-V~sl~fspdg~~LaSgs~DG 786 (792)
.+.+||.++.+...+...... -...+..-++++++.|+.+.
T Consensus 291 ~~e~yd~~~~~W~~~~~lp~~~~~~~~~~~~~~iyv~GG~~~ 332 (346)
T TIGR03547 291 SSEVYALDNGKWSKVGKLPQGLAYGVSVSWNNGVLLIGGENS 332 (346)
T ss_pred EeeEEEecCCcccccCCCCCCceeeEEEEcCCEEEEEeccCC
Confidence 467888887664433222211 12223345788888888753
No 453
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=94.36 E-value=4.9 Score=44.84 Aligned_cols=14 Identities=7% Similarity=0.145 Sum_probs=10.2
Q ss_pred cEEEEEcCCCeeEE
Q 003840 621 EIRYWSINNGSCTR 634 (792)
Q Consensus 621 ~I~iwdl~~~~~~~ 634 (792)
.|.+||..+.+...
T Consensus 190 ~v~~YD~~t~~W~~ 203 (376)
T PRK14131 190 EVLSYDPSTNQWKN 203 (376)
T ss_pred eEEEEECCCCeeeE
Confidence 58889988776544
No 454
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=94.34 E-value=1 Score=50.41 Aligned_cols=140 Identities=10% Similarity=0.083 Sum_probs=93.6
Q ss_pred CCCeE-EEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCC-------eEEEEEeCCCcEEEEEcCCCe-eEE-
Q 003840 565 SMPRL-ATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKD-------DLICSCDGDGEIRYWSINNGS-CTR- 634 (792)
Q Consensus 565 dg~~L-asgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~-------~ll~sgs~Dg~I~iwdl~~~~-~~~- 634 (792)
+..+| ..|+....++-.|++. ++.+..+.-|... -+.|.|+.+ .-| +|-.+..|.-.|.+-.. .+.
T Consensus 478 dssli~~dg~~~~kLykmDIEr-GkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtl-vGlS~~svFrIDPR~~gNKi~v 553 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIER-GKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTL-VGLSDYSVFRIDPRARGNKIKV 553 (776)
T ss_pred CcceEEecCCCcccceeeeccc-ceeeeEeecCCcc--eeecCCchhHHhcCccceE-EeecccceEEecccccCCceee
Confidence 34443 3455556677778876 7778888777665 466776532 123 45557777777765432 222
Q ss_pred -EeeCCee----EEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECC
Q 003840 635 -VFKGGTA----QMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVG 708 (792)
Q Consensus 635 -~~~~~~~----~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d~I~IwDl~ 708 (792)
.++.... +.......+++++++..|.|++||--.-+....+.+....|..|..+.+|++|++.+...+.+.|++
T Consensus 554 ~esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~yllL~d~~ 632 (776)
T COG5167 554 VESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKNYLLLTDVP 632 (776)
T ss_pred eeehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecceEEEEecc
Confidence 2222222 2223445689999999999999997665555556667788999999999999999998888888875
No 455
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=94.29 E-value=9.4 Score=41.24 Aligned_cols=231 Identities=13% Similarity=0.019 Sum_probs=110.3
Q ss_pred CCCEEEEEeCCCeEEEEECCC--CceeEEeccCCCCEEEEEECCCCCeEEEEe-CCCcEEEEeCCCCCc-----------
Q 003840 523 DGKLLATGGHDKKAVLWHTDT--LKSKTNLEEHSSLITDVRFSPSMPRLATSS-FDKTVRVWDADNPGY----------- 588 (792)
Q Consensus 523 dg~~Lasgs~Dg~I~vWdl~t--~~~~~~l~~h~~~V~~i~fspdg~~Lasgs-~Dg~V~IWdl~s~~~----------- 588 (792)
++++|+.|+++|...+. +.. .+..+.+ +...|+++...+..+.|++-+ ....+++|++..-..
T Consensus 12 ~~~~lL~GTe~Gly~~~-~~~~~~~~~kl~--~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~ 88 (302)
T smart00036 12 DGKWLLVGTEEGLYVLN-ISDQPGTLEKLI--GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLV 88 (302)
T ss_pred CCcEEEEEeCCceEEEE-cccCCCCeEEec--CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCcccc
Confidence 44689999999865554 554 2333333 466899999998777665554 344599999843110
Q ss_pred ---eeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCC----eeEEEe---e---C-CeeEEEEecC--CCEE
Q 003840 589 ---SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG----SCTRVF---K---G-GTAQMRFQPH--LGRY 652 (792)
Q Consensus 589 ---~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~----~~~~~~---~---~-~~~~v~~sp~--~~~l 652 (792)
.......+......+++......+++++.....|.++.+... ...+.+ . . ....+..++. ...+
T Consensus 89 ~~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~l 168 (302)
T smart00036 89 IRKNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGI 168 (302)
T ss_pred ccccceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceEE
Confidence 011122333333333333222223334444566666544322 112211 0 1 1112222222 3566
Q ss_pred EEEEcCCeEEEEECCC--CeE-----EEEecCCC-CCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEeecCCC
Q 003840 653 LAAAAENVVSILDAET--QAC-----RLSLQGHT-KPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGN 724 (792)
Q Consensus 653 la~s~dg~I~i~D~~t--~~~-----~~~l~~h~-~~V~sv~~spdg~~Las~s~d~I~IwDl~s~~~~~~i~~~~~~~~ 724 (792)
++|+..+...++++.. ... -+...... .++ ++...+++.+| .+.++...+.|...... .....+. -..
T Consensus 169 cvG~~~~~~~~~~~~~~~~~~~d~sl~~~~~~~~~~p~-~i~~l~~~e~L-lc~~~~~v~Vn~~G~~~-~r~~~l~-w~~ 244 (302)
T smart00036 169 CIGSDKGGGDVVQFHESLVSKEDLSLPFLSEETSLKPI-SVVQVPRDEFL-LCYDEFGVFVNLYGKRR-SRNPILH-WEF 244 (302)
T ss_pred EEEEcCCCCeEEEEeecccccccccccccccccccCce-EEEEECCCeEE-EEECcEEEEEeCCCCcc-ccceEEE-cCC
Confidence 7776653344444422 110 00011111 333 33333445444 45555444445432111 1111111 123
Q ss_pred ceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEccc
Q 003840 725 KFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAH 763 (792)
Q Consensus 725 ~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~~~~~h 763 (792)
...++++. ..+|++... ..|.|+++.+++.+....+
T Consensus 245 ~p~~~~~~--~pyll~~~~-~~ievr~l~~~~l~q~i~~ 280 (302)
T smart00036 245 MPESFAYH--SPYLLAFHD-NGIEIRSIKTGELLQELAD 280 (302)
T ss_pred cccEEEEE--CCEEEEEcC-CcEEEEECCCCceEEEEec
Confidence 44566666 366777654 5699999999987744433
No 456
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=94.26 E-value=0.022 Score=66.72 Aligned_cols=118 Identities=19% Similarity=0.248 Sum_probs=74.1
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEE-----------ECCCCCeEEEEeCCCcEEEEeC
Q 003840 515 VICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVR-----------FSPSMPRLATSSFDKTVRVWDA 583 (792)
Q Consensus 515 V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~-----------fspdg~~Lasgs~Dg~V~IWdl 583 (792)
|..+-|-++.-++..+-.++.|++.++++... ..+.+|...+++++ .+|||+.|++++.||.|++|-+
T Consensus 186 V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qi 264 (1283)
T KOG1916|consen 186 VSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQI 264 (1283)
T ss_pred eeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeee
Confidence 44444445667888888889999887765433 44555777666654 4889999999999999999876
Q ss_pred CCCC----ceeEEecccCC-CeEEEEEcCCC---------CeEEEEEeCCCcEEEEEcCCCeeE
Q 003840 584 DNPG----YSLRTFMGHSA-SVMSLDFHPNK---------DDLICSCDGDGEIRYWSINNGSCT 633 (792)
Q Consensus 584 ~s~~----~~i~~~~~h~~-~V~sl~fspd~---------~~ll~sgs~Dg~I~iwdl~~~~~~ 633 (792)
.-.+ .++..++.|.+ +-.|.-|+... ..+|-+...+..+++|.....+|.
T Consensus 265 yi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 265 YITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred eeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 5322 33445555652 22222232211 123333444677899988877776
No 457
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=94.20 E-value=5.4 Score=49.50 Aligned_cols=29 Identities=17% Similarity=0.174 Sum_probs=17.2
Q ss_pred cceEEEEeCCCeeeecCCC--eeEeCCCcch
Q 003840 430 KPLMMFGTDGAGTLTSPSN--QLWDDKDLEL 458 (792)
Q Consensus 430 k~~l~~s~Dg~~~~ss~s~--~lWD~~tg~~ 458 (792)
+-.+..+|-...++.+... +||.++..+.
T Consensus 409 ~Yy~AvsPvdgtlyvSdp~s~qv~rv~sl~~ 439 (1899)
T KOG4659|consen 409 SYYIAVSPVDGTLYVSDPLSKQVWRVSSLEP 439 (1899)
T ss_pred eeEEEecCcCceEEecCCCcceEEEeccCCc
Confidence 4456677754445554444 8888776554
No 458
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=94.14 E-value=9.5 Score=41.69 Aligned_cols=141 Identities=13% Similarity=0.257 Sum_probs=79.3
Q ss_pred CCeEEEEEcCCCCeEEEEEeCCCc------EEEEEcCCC----eeEEE-----ee---C--------CeeEEEEecCCCE
Q 003840 598 ASVMSLDFHPNKDDLICSCDGDGE------IRYWSINNG----SCTRV-----FK---G--------GTAQMRFQPHLGR 651 (792)
Q Consensus 598 ~~V~sl~fspd~~~ll~sgs~Dg~------I~iwdl~~~----~~~~~-----~~---~--------~~~~v~~sp~~~~ 651 (792)
+.+..|.+.+++..++ +.+.+|. ++.+++... ..+.. +. + ....+++.+++..
T Consensus 20 GGlSgl~~~~~~~~~~-avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~ 98 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFY-AVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF 98 (326)
T ss_pred CcEeeEEEeCCCCEEE-EEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence 5577888886555444 4555666 655555431 00110 11 1 2345777555555
Q ss_pred EEEEEcC------CeEEEEECCCCeEEEEec---------------CCCCCeEEEEEcCCCCEEEEEeCC--------e-
Q 003840 652 YLAAAAE------NVVSILDAETQACRLSLQ---------------GHTKPIDSVCWDPSGELLASVSED--------S- 701 (792)
Q Consensus 652 lla~s~d------g~I~i~D~~t~~~~~~l~---------------~h~~~V~sv~~spdg~~Las~s~d--------~- 701 (792)
+++.-.+ ..|+.+|.. ++.+..+. ..+..+.+|+++|+|+.|+++.+. .
T Consensus 99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~ 177 (326)
T PF13449_consen 99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRAN 177 (326)
T ss_pred EEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcccc
Confidence 5544446 688888876 54443331 133458899999999966655321 1
Q ss_pred ------EEEEECCCCC----CcceEEEeec-----CCCceEEEEEeCCCCEEEE
Q 003840 702 ------VRVWTVGSGS----EGECVHELSC-----NGNKFHSCVFHPTYPSLLV 740 (792)
Q Consensus 702 ------I~IwDl~s~~----~~~~i~~~~~-----~~~~i~si~fspdg~~L~s 740 (792)
++|+.+.... .......+.. ....+..+++-+++++|+.
T Consensus 178 ~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 178 PDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred cccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 5555444321 1122333332 4577899999999986554
No 459
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=94.09 E-value=2.6 Score=42.18 Aligned_cols=170 Identities=13% Similarity=0.151 Sum_probs=89.5
Q ss_pred CCCEEEEEeC--CCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEE-EeCCCcEEEEeCCCCCceeEEecccCCC
Q 003840 523 DGKLLATGGH--DKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLAT-SSFDKTVRVWDADNPGYSLRTFMGHSAS 599 (792)
Q Consensus 523 dg~~Lasgs~--Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Las-gs~Dg~V~IWdl~s~~~~i~~~~~h~~~ 599 (792)
+|.++.+.+. ...|++||+.+++.+..-.-....+..=-...-+.++.. .=.||.-.+||.++ -+++..+. ..+.
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t-~~~lg~~~-y~Ge 132 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADT-LEELGRFS-YEGE 132 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHH-hhhhcccc-cCCc
Confidence 4556666553 347999999999877654422111111111111233332 33577788898886 44444433 3344
Q ss_pred eEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee----C----CeeEEEEecCCCEEEE-EEcCCeEEEEECCCCe
Q 003840 600 VMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK----G----GTAQMRFQPHLGRYLA-AAAENVVSILDAETQA 670 (792)
Q Consensus 600 V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~----~----~~~~v~~sp~~~~lla-~s~dg~I~i~D~~t~~ 670 (792)
=+.++. |+..++ .++...++++-|.++......+. + ..+.+.|- + +.+++ .-.+..|...|..+++
T Consensus 133 GWgLt~--d~~~Li-msdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-d-G~lyANVw~t~~I~rI~p~sGr 207 (262)
T COG3823 133 GWGLTS--DDKNLI-MSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-D-GELYANVWQTTRIARIDPDSGR 207 (262)
T ss_pred ceeeec--CCcceE-eeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-c-cEEEEeeeeecceEEEcCCCCc
Confidence 455554 445555 55555677777766554333321 1 11112221 2 23332 2335566667777777
Q ss_pred EEEEec------------CCCCCeEEEEEcCCCCEEEEEeC
Q 003840 671 CRLSLQ------------GHTKPIDSVCWDPSGELLASVSE 699 (792)
Q Consensus 671 ~~~~l~------------~h~~~V~sv~~spdg~~Las~s~ 699 (792)
++..+. .|..-.+.|++.|++..|+..+.
T Consensus 208 V~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK 248 (262)
T COG3823 208 VVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGK 248 (262)
T ss_pred EEEEEEccCCchhcCccccccccccceeecCcCCeEEEecC
Confidence 666543 23445778999998865554443
No 460
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=93.70 E-value=17 Score=42.21 Aligned_cols=224 Identities=15% Similarity=0.162 Sum_probs=109.2
Q ss_pred CCCCCeEEEEeCCCcEEEEeCCCCCc-eeEEeccc-CCCeEEEEEcCCCCeEEEEEeC--CCcEEEEEcCCCeeEEEee-
Q 003840 563 SPSMPRLATSSFDKTVRVWDADNPGY-SLRTFMGH-SASVMSLDFHPNKDDLICSCDG--DGEIRYWSINNGSCTRVFK- 637 (792)
Q Consensus 563 spdg~~Lasgs~Dg~V~IWdl~s~~~-~i~~~~~h-~~~V~sl~fspd~~~ll~sgs~--Dg~I~iwdl~~~~~~~~~~- 637 (792)
..++..++.+..+|.++...+...+. ......+. .....++++..++..+++.|+. |+.+..|....-+++..+.
T Consensus 219 ~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~~N 298 (504)
T PF10433_consen 219 DKDGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSLPN 298 (504)
T ss_dssp STTSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE--
T ss_pred cCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEeccC
Confidence 44677899999999999888876332 12222222 4556678887766445556665 5556666644445555554
Q ss_pred -CCeeEEEEecC----CC------EEEEEEc---CCeEEEEECCCCeE--EEEecCC--CCCeEEEEEcC-CCCEEEEEe
Q 003840 638 -GGTAQMRFQPH----LG------RYLAAAA---ENVVSILDAETQAC--RLSLQGH--TKPIDSVCWDP-SGELLASVS 698 (792)
Q Consensus 638 -~~~~~v~~sp~----~~------~lla~s~---dg~I~i~D~~t~~~--~~~l~~h--~~~V~sv~~sp-dg~~Las~s 698 (792)
+++..+++... .. .+++++. +|.++++.---+-. ....... ...++.+.... ++.||+...
T Consensus 299 ~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi~~~~~~~~~~~l~~v~~iW~l~~~~~~~~~lv~S~ 378 (504)
T PF10433_consen 299 WGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGIGIEGLELASSELPGVTGIWTLKLSSSDHSYLVLSF 378 (504)
T ss_dssp --SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEESBEEE--EEEEEEESTEEEEEEE-SSSSSBSEEEEEE
T ss_pred cCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEeccCCceeeeeeccCCCCceEEEEeeecCCCceEEEEEc
Confidence 46666666422 22 6777765 67888774321111 1111111 22344443322 256888888
Q ss_pred CCeEEEEECCCCCCcceEEE-----eecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEE--cccCCCeEEEE
Q 003840 699 EDSVRVWTVGSGSEGECVHE-----LSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTL--TAHEGLIAALA 771 (792)
Q Consensus 699 ~d~I~IwDl~s~~~~~~i~~-----~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~~~--~~h~~~V~sl~ 771 (792)
.+.-+++.+..++....+.. +......+.+..+. +..++=... ..|++.+....+.... ......|.+.+
T Consensus 379 ~~~T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~--~~~ivQVt~-~~i~l~~~~~~~~~~~w~~~~~~~I~~a~ 455 (504)
T PF10433_consen 379 PNETRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVG--DGRIVQVTP-KGIRLIDLEDGKLTQEWKPPAGSIIVAAS 455 (504)
T ss_dssp SSEEEEEEES----SSEEEEE---TS-SSS-EEEEEEET--TTEEEEEES-SEEEEEESSSTSEEEEEE-TTS---SEEE
T ss_pred CCceEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcC--CCeEEEEec-CeEEEEECCCCeEEEEEeCCCCCeEEEEE
Confidence 77555666531111122211 11112223332332 344444444 3588888877766632 23444555555
Q ss_pred EeCCCCEEEEEeCCCcEEEe
Q 003840 772 VSTETGYVASASHDKFVKLW 791 (792)
Q Consensus 772 fspdg~~LaSgs~DG~I~IW 791 (792)
+. +.+++.+-.++.+.++
T Consensus 456 ~~--~~~v~v~~~~~~~~~~ 473 (504)
T PF10433_consen 456 IN--DPQVLVALSGGELVYF 473 (504)
T ss_dssp ES--SSEEEEEE-TTEEEEE
T ss_pred EC--CCEEEEEEeCCcEEEE
Confidence 53 3455555556666554
No 461
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=93.69 E-value=1.9 Score=48.28 Aligned_cols=128 Identities=14% Similarity=0.168 Sum_probs=78.1
Q ss_pred cceeccCCcceeeeeeeecCCCCeEEEEEcCCCCE-------EEEEeCCCeEEEEECC-CCceeEEeccCCCCEEEEEEC
Q 003840 492 RGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKL-------LATGGHDKKAVLWHTD-TLKSKTNLEEHSSLITDVRFS 563 (792)
Q Consensus 492 ~~~d~~~~~~~~~~~~l~~H~~~V~~lafspdg~~-------Lasgs~Dg~I~vWdl~-t~~~~~~l~~h~~~V~~i~fs 563 (792)
-.+|+..|. .+..+..|.+. -+.|.|+.++ -++|-.+..|.-.|.. .+..+.. ......++.-.|+
T Consensus 493 ykmDIErGk---vveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v-~esKdY~tKn~Fs 566 (776)
T COG5167 493 YKMDIERGK---VVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKV-VESKDYKTKNKFS 566 (776)
T ss_pred eeeecccce---eeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceee-eeehhcccccccc
Confidence 345555553 33444455554 5667775431 2344455555555543 2322222 1122223333333
Q ss_pred C----CCCeEEEEeCCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcC
Q 003840 564 P----SMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN 628 (792)
Q Consensus 564 p----dg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~ 628 (792)
. ...+||+|+..|.|++||--. ......+.+....|..|....+|+++||+| ..+|.+-|++
T Consensus 567 s~~tTesGyIa~as~kGDirLyDRig-~rAKtalP~lG~aIk~idvta~Gk~ilaTC--k~yllL~d~~ 632 (776)
T COG5167 567 SGMTTESGYIAAASRKGDIRLYDRIG-KRAKTALPGLGDAIKHIDVTANGKHILATC--KNYLLLTDVP 632 (776)
T ss_pred ccccccCceEEEecCCCceeeehhhc-chhhhcCcccccceeeeEeecCCcEEEEee--cceEEEEecc
Confidence 3 334999999999999999764 344455667778899999999999999888 5678887765
No 462
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=93.66 E-value=17 Score=41.99 Aligned_cols=140 Identities=14% Similarity=0.083 Sum_probs=69.9
Q ss_pred CCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEecccCCC---eEEEEEcCCC
Q 003840 533 DKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSAS---VMSLDFHPNK 609 (792)
Q Consensus 533 Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~~~---V~sl~fspd~ 609 (792)
.+.+.++|.+ |..+..+.........+.+.++|.+++... ..++.+|+. ++.+..+.-.... =.++.+.|+|
T Consensus 127 ~~~~~~iD~~-G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~--G~v~~~~~l~~~~~~~HHD~~~l~nG 201 (477)
T PF05935_consen 127 SSYTYLIDNN-GDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLL--GKVIWEYDLPGGYYDFHHDIDELPNG 201 (477)
T ss_dssp EEEEEEEETT-S-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT----EEEEEE--TTEE-B-S-EEE-TTS
T ss_pred CceEEEECCC-ccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCC--CCEEEeeecCCcccccccccEECCCC
Confidence 3445555533 334433332211111166778887776655 678888886 3444443322211 2356677887
Q ss_pred CeEEEEEe-------C-----CCcEEEEEcCCCeeEEEee------------------------------CCeeEEEEec
Q 003840 610 DDLICSCD-------G-----DGEIRYWSINNGSCTRVFK------------------------------GGTAQMRFQP 647 (792)
Q Consensus 610 ~~ll~sgs-------~-----Dg~I~iwdl~~~~~~~~~~------------------------------~~~~~v~~sp 647 (792)
+.|+++.. . +-.|..+| .+|+.+..+. .++.++.+.+
T Consensus 202 n~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~ 280 (477)
T PF05935_consen 202 NLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDP 280 (477)
T ss_dssp -EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEET
T ss_pred CEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeC
Confidence 76665541 1 12355555 5555554321 1456788889
Q ss_pred CCCEEEEEEcC-CeEEEEECCCCeEEEEecCC
Q 003840 648 HLGRYLAAAAE-NVVSILDAETQACRLSLQGH 678 (792)
Q Consensus 648 ~~~~lla~s~d-g~I~i~D~~t~~~~~~l~~h 678 (792)
..+.|++.+.. ..|..+|.++++....+..+
T Consensus 281 ~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~ 312 (477)
T PF05935_consen 281 SDDSIIVSSRHQSAVIKIDYRTGKIKWILGPP 312 (477)
T ss_dssp TTTEEEEEETTT-EEEEEE-TTS-EEEEES-S
T ss_pred CCCeEEEEcCcceEEEEEECCCCcEEEEeCCC
Confidence 77888888875 49999999999888877654
No 463
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=93.62 E-value=6.6 Score=43.84 Aligned_cols=39 Identities=18% Similarity=0.228 Sum_probs=20.2
Q ss_pred EEEEECCCCcEEEEcccC-CCeEEEEEeCCCCEEEEEeCC
Q 003840 747 LELWNMSENKTMTLTAHE-GLIAALAVSTETGYVASASHD 785 (792)
Q Consensus 747 I~IwDl~~~~~~~~~~h~-~~V~sl~fspdg~~LaSgs~D 785 (792)
+.+||..+++...+..-. ..-...+..-+++++++||..
T Consensus 314 ~e~yd~~~~~W~~~~~lp~~r~~~~av~~~~~iyv~GG~~ 353 (376)
T PRK14131 314 DEIYALVNGKWQKVGELPQGLAYGVSVSWNNGVLLIGGET 353 (376)
T ss_pred hheEEecCCcccccCcCCCCccceEEEEeCCEEEEEcCCC
Confidence 567888876644222111 111122334467788888753
No 464
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=93.51 E-value=18 Score=42.50 Aligned_cols=197 Identities=12% Similarity=0.078 Sum_probs=106.3
Q ss_pred EEEEEECCCCCeEEEEe-----CCCcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCc----EEEEEc
Q 003840 557 ITDVRFSPSMPRLATSS-----FDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGE----IRYWSI 627 (792)
Q Consensus 557 V~~i~fspdg~~Lasgs-----~Dg~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~----I~iwdl 627 (792)
+-.++.+||.+++|-+- ..=+++|.|+.++......+. +...+++|.+|+..++++...++. |....+
T Consensus 131 Lg~~~~s~D~~~la~s~D~~G~e~y~lr~kdL~tg~~~~d~i~---~~~~~~~Wa~d~~~lfYt~~d~~~rp~kv~~h~~ 207 (682)
T COG1770 131 LGAASISPDHNLLAYSVDVLGDEQYTLRFKDLATGEELPDEIT---NTSGSFAWAADGKTLFYTRLDENHRPDKVWRHRL 207 (682)
T ss_pred eeeeeeCCCCceEEEEEecccccEEEEEEEecccccccchhhc---ccccceEEecCCCeEEEEEEcCCCCcceEEEEec
Confidence 55677888988877653 233688999988544433333 345688999999999988776652 333333
Q ss_pred CC--CeeEEEee--CCe--eEEEEecCCCEEEEEEc---CCeEEEEECCCCeEE--EEecCCCCCeEEEEEcCCCCEEEE
Q 003840 628 NN--GSCTRVFK--GGT--AQMRFQPHLGRYLAAAA---ENVVSILDAETQACR--LSLQGHTKPIDSVCWDPSGELLAS 696 (792)
Q Consensus 628 ~~--~~~~~~~~--~~~--~~v~~sp~~~~lla~s~---dg~I~i~D~~t~~~~--~~l~~h~~~V~sv~~spdg~~Las 696 (792)
.+ ..-...+. ... ..+.-+....+|+.... .+.+++.+....... .......+--..+. ..+.+++.
T Consensus 208 gt~~~~d~lvyeE~d~~f~~~v~~s~s~~yi~i~~~~~~tsE~~ll~a~~p~~~p~vv~pr~~g~eY~~e--h~~d~f~i 285 (682)
T COG1770 208 GTPGSSDELVYEEKDDRFFLSVGRSRSEAYIVISLGSHITSEVRLLDADDPEAEPKVVLPRENGVEYSVE--HGGDRFYI 285 (682)
T ss_pred CCCCCcceEEEEcCCCcEEEEeeeccCCceEEEEcCCCcceeEEEEecCCCCCceEEEEEcCCCcEEeee--ecCcEEEE
Confidence 33 11122222 222 22333444556665553 357888887665321 11111111111122 12333333
Q ss_pred Ee--CC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCC---eEEEEECCCCcEE
Q 003840 697 VS--ED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ---SLELWNMSENKTM 758 (792)
Q Consensus 697 ~s--~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg---~I~IwDl~~~~~~ 758 (792)
-+ .+ ..+|+..........-..+..|...+.--.|+--.++|+....++ .|++++..++...
T Consensus 286 ~sN~~gknf~l~~ap~~~~~~~w~~~I~h~~~~~l~~~~~f~~~lVl~eR~~glp~v~v~~~~~~~~~ 353 (682)
T COG1770 286 LSNADGKNFKLVRAPVSADKSNWRELIPHREDVRLEGVDLFADHLVLLERQEGLPRVVVRDRKTGEER 353 (682)
T ss_pred EecCCCcceEEEEccCCCChhcCeeeeccCCCceeeeeeeeccEEEEEecccCCceEEEEecCCCcee
Confidence 22 22 455555433111122334555666666666777777788776654 7888998876654
No 465
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=93.48 E-value=0.0084 Score=65.96 Aligned_cols=140 Identities=21% Similarity=0.314 Sum_probs=97.4
Q ss_pred eEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC--eEEEEECCCCCCcceEEE
Q 003840 641 AQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHE 718 (792)
Q Consensus 641 ~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d--~I~IwDl~s~~~~~~i~~ 718 (792)
....|.+.+..+++++.+..|..||-....... +. .++....++|+-++..++...+. .+++||+.+.... .
T Consensus 38 i~~~w~~e~~nlavaca~tiv~~YD~agq~~le-~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytq----q 111 (615)
T KOG2247|consen 38 IIHRWRPEGHNLAVACANTIVIYYDKAGQVILE-LN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQ----Q 111 (615)
T ss_pred ceeeEecCCCceehhhhhhHHHhhhhhcceecc-cC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHH----H
Confidence 345677777788888888888888865433222 11 33455678999988876665544 8999999764211 1
Q ss_pred eecC-CCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEcc-cCCCeEEEEEeCCCCEEEEEeCCCc
Q 003840 719 LSCN-GNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTA-HEGLIAALAVSTETGYVASASHDKF 787 (792)
Q Consensus 719 ~~~~-~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~~~~~-h~~~V~sl~fspdg~~LaSgs~DG~ 787 (792)
+... ...-.-+.|++.+..++.+...|.+.||+..+.+.....+ |...+++++|.+++ +++.++.|..
T Consensus 112 LE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd-~vil~dcd~~ 181 (615)
T KOG2247|consen 112 LESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLED-YVILCDCDNT 181 (615)
T ss_pred HhccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccc-eeeecCcHHH
Confidence 1111 1111226899999999999999999999998888775555 99999999999876 4555555544
No 466
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=93.36 E-value=2.3 Score=50.14 Aligned_cols=109 Identities=12% Similarity=0.203 Sum_probs=69.7
Q ss_pred CCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEe--CCCCEEEEEEcCCeEEEEECC---
Q 003840 680 KPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFH--PTYPSLLVIGCYQSLELWNMS--- 753 (792)
Q Consensus 680 ~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fs--pdg~~L~sgs~dg~I~IwDl~--- 753 (792)
....-+.-+.-++..++.+.. .+.|||.+.+. .+.-..+ .....|..+.|. |++..|++.|..+.|.+|--.
T Consensus 30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~-lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~d 107 (631)
T PF12234_consen 30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGV-LEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYD 107 (631)
T ss_pred CCcceEeecccCcEEEEECCCCEEEEEEcCCcE-EEEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchh
Confidence 344445555545544444444 99999998753 1122222 456778888875 688999999999999998532
Q ss_pred --CC-------cEEEEcccC-CCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003840 754 --EN-------KTMTLTAHE-GLIAALAVSTETGYVASASHDKFVKLWK 792 (792)
Q Consensus 754 --~~-------~~~~~~~h~-~~V~sl~fspdg~~LaSgs~DG~I~IWd 792 (792)
.. +.+.+..|+ .+|.+..|..+|.+++.+| +.+.|++
T Consensus 108 y~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~d 154 (631)
T PF12234_consen 108 YTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFD 154 (631)
T ss_pred hhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEEC
Confidence 11 122344555 6899999999997666543 4566654
No 467
>PHA02790 Kelch-like protein; Provisional
Probab=93.36 E-value=3.3 Score=47.94 Aligned_cols=166 Identities=8% Similarity=-0.064 Sum_probs=79.8
Q ss_pred CeEEEEEeCCC-----cEEEEEcCCCeeEEEee--CCe-eEEEEecCCCEEEEEEcC--CeEEEEECCCCeEEE--EecC
Q 003840 610 DDLICSCDGDG-----EIRYWSINNGSCTRVFK--GGT-AQMRFQPHLGRYLAAAAE--NVVSILDAETQACRL--SLQG 677 (792)
Q Consensus 610 ~~ll~sgs~Dg-----~I~iwdl~~~~~~~~~~--~~~-~~v~~sp~~~~lla~s~d--g~I~i~D~~t~~~~~--~l~~ 677 (792)
+.++++|+.++ .+..||..+.+....-. ... .......++..+++|+.+ ..+..||..+.+-.. .+..
T Consensus 272 ~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~ 351 (480)
T PHA02790 272 EVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLK 351 (480)
T ss_pred CEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCCCceEEEECCCCeEEECCCCCC
Confidence 45666777543 57788888766543221 111 111122344444555543 467888876653322 1111
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCC----eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 003840 678 HTKPIDSVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMS 753 (792)
Q Consensus 678 h~~~V~sv~~spdg~~Las~s~d----~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~ 753 (792)
..... +++ .-+|++.+.|+.+ .+..||.++. .+..+..+.... ....+..-+++..++| |.+.+||..
T Consensus 352 ~r~~~-~~~-~~~g~IYviGG~~~~~~~ve~ydp~~~-~W~~~~~m~~~r--~~~~~~~~~~~IYv~G---G~~e~ydp~ 423 (480)
T PHA02790 352 PRCNP-AVA-SINNVIYVIGGHSETDTTTEYLLPNHD-QWQFGPSTYYPH--YKSCALVFGRRLFLVG---RNAEFYCES 423 (480)
T ss_pred CCccc-EEE-EECCEEEEecCcCCCCccEEEEeCCCC-EEEeCCCCCCcc--ccceEEEECCEEEEEC---CceEEecCC
Confidence 11111 222 2356766666643 4777887653 112211111111 1112223345544444 457889998
Q ss_pred CCcEEEEcc--c-CCCeEEEEEeCCCCEEEEEeCC
Q 003840 754 ENKTMTLTA--H-EGLIAALAVSTETGYVASASHD 785 (792)
Q Consensus 754 ~~~~~~~~~--h-~~~V~sl~fspdg~~LaSgs~D 785 (792)
+++...+.. + .... +++ .-++++.+.||.+
T Consensus 424 ~~~W~~~~~m~~~r~~~-~~~-v~~~~IYviGG~~ 456 (480)
T PHA02790 424 SNTWTLIDDPIYPRDNP-ELI-IVDNKLLLIGGFY 456 (480)
T ss_pred CCcEeEcCCCCCCcccc-EEE-EECCEEEEECCcC
Confidence 877654332 1 1122 222 2367788888764
No 468
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=93.33 E-value=13 Score=40.73 Aligned_cols=15 Identities=0% Similarity=0.044 Sum_probs=10.4
Q ss_pred CcEEEEEcCCCeeEE
Q 003840 620 GEIRYWSINNGSCTR 634 (792)
Q Consensus 620 g~I~iwdl~~~~~~~ 634 (792)
..|.+||..+.+...
T Consensus 168 ~~v~~YDp~t~~W~~ 182 (346)
T TIGR03547 168 KNVLSYDPSTNQWRN 182 (346)
T ss_pred ceEEEEECCCCceeE
Confidence 457888988766443
No 469
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.27 E-value=2.1 Score=53.66 Aligned_cols=227 Identities=11% Similarity=0.026 Sum_probs=107.7
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCC-CEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeE
Q 003840 513 SKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSS-LITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLR 591 (792)
Q Consensus 513 ~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~-~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~ 591 (792)
.....++|++.-.++|.|+.+|.|++|-...-+.+.....-.. .+..+.|......+.....+..+.+|........
T Consensus 36 ~~~~~~afD~~q~llai~t~tg~i~~yg~~~ve~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~-- 113 (993)
T KOG1983|consen 36 STPSALAFDPTQGLLAIGTRTGAIKIYGQPGVEFVGLHPKQNQINVTRIELLVGISRNLVLSDDDSLHLWSIKIKTGV-- 113 (993)
T ss_pred CCCcceeeccccceEEEEEecccEEEecccceEEEeccccccchhhhheeeeecccccceeecccceeeeccccccee--
Confidence 4567889999999999999999999997654333322221111 2222222222223334444555666655431111
Q ss_pred EecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEe----eCCeeEE-EEecCCCEEEEEEcCCeEEEEEC
Q 003840 592 TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF----KGGTAQM-RFQPHLGRYLAAAAENVVSILDA 666 (792)
Q Consensus 592 ~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~----~~~~~~v-~~sp~~~~lla~s~dg~I~i~D~ 666 (792)
.+...+++....+ .-.++.+ ..+.+++||..-....... ....... .+.+..-.+..--.+-.-.+|-+
T Consensus 114 ---~~~~~~~~~~~~~--~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 187 (993)
T KOG1983|consen 114 ---FLKQEITSFVTDP--PPDWLIG-ENGLVKVSDVLRHQLSDLKYAGTESSNFVPYESLSPTLSIEGLVIDLDTVLISL 187 (993)
T ss_pred ---ecCCcceeccCCC--Ccchhcc-cCceeeEeeechhhhccceeccccccccceeeeeccceeeeccccccccceeec
Confidence 1223333333222 2122344 7788888886532211111 1110000 01100000000000000001111
Q ss_pred CCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCe
Q 003840 667 ETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQS 746 (792)
Q Consensus 667 ~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d~I~IwDl~s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~ 746 (792)
.... ..+..+..++.+..+......+.......+.+|+..... ..+.+. +....+..++..++++..||.
T Consensus 188 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-----~~~~~~~~~~~~~v~~h~Dgs 257 (993)
T KOG1983|consen 188 PDAY--LGLSLIEYESLQVLYYSPTKILIGFNRGLVVIKDRASKY---VQSAYL-----PNGQLESRDGSHFVSYHTDGS 257 (993)
T ss_pred cccc--ccccccccccceeeeecCCCcceeeeeeeeeehhccccc---chhhcc-----cccccCccCCceEEEEEecCC
Confidence 0000 122224455666666555565655555566666654321 111111 111122788999999999999
Q ss_pred EEEEECCCCcE
Q 003840 747 LELWNMSENKT 757 (792)
Q Consensus 747 I~IwDl~~~~~ 757 (792)
+.+||...++.
T Consensus 258 ~~fWd~s~g~~ 268 (993)
T KOG1983|consen 258 YAFWDVSSGKL 268 (993)
T ss_pred EEeeecCCCce
Confidence 99999998754
No 470
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.22 E-value=4.6 Score=47.53 Aligned_cols=175 Identities=11% Similarity=0.213 Sum_probs=89.2
Q ss_pred CcEEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEE------EeeCCeeEEEEecCC
Q 003840 576 KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR------VFKGGTAQMRFQPHL 649 (792)
Q Consensus 576 g~V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~------~~~~~~~~v~~sp~~ 649 (792)
-.|+||++. +..+..+.-..+.+-.+.|+.+. .|| +...||++++|++-...... .....+..+.+..
T Consensus 64 ~~I~If~~s--G~lL~~~~w~~~~lI~mgWs~~e-eLI-~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~-- 137 (829)
T KOG2280|consen 64 PYIRIFNIS--GQLLGRILWKHGELIGMGWSDDE-ELI-CVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFH-- 137 (829)
T ss_pred eeEEEEecc--ccchHHHHhcCCCeeeecccCCc-eEE-EEeccceEEEeecchhhhcccccccccccCceeEEEEec--
Confidence 347888876 45554444344478899999774 344 66789999999986432221 1112233333333
Q ss_pred CEEEEEEcCCeEEEEECCCCeEEEEecC-CCCCeEEEEEc--CCCC---EEEEEeCC-eEEEEECCCCCCcceEEEeecC
Q 003840 650 GRYLAAAAENVVSILDAETQACRLSLQG-HTKPIDSVCWD--PSGE---LLASVSED-SVRVWTVGSGSEGECVHELSCN 722 (792)
Q Consensus 650 ~~lla~s~dg~I~i~D~~t~~~~~~l~~-h~~~V~sv~~s--pdg~---~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~ 722 (792)
+-+++-..+|.|.+..-.....+.++.. ......+.||. +++. .++-...- ...++-+.... .....+...
T Consensus 138 ~GVavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~--~q~~~~~~~ 215 (829)
T KOG2280|consen 138 NGVAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESR--VQLHALSWP 215 (829)
T ss_pred CceEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceeccc--ccccccCCC
Confidence 3344444455444443322222222222 11111112222 2211 11111101 11122221111 112222223
Q ss_pred CCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE
Q 003840 723 GNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM 758 (792)
Q Consensus 723 ~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~ 758 (792)
...+..|+++|+.++|+.-...|.|.+-+.+..+++
T Consensus 216 ~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~l 251 (829)
T KOG2280|consen 216 NSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQIL 251 (829)
T ss_pred CceEEEEEEcCCcceEEEEecCCcEEEEecchhhhh
Confidence 456888999999999999999999999988766654
No 471
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=93.21 E-value=0.23 Score=37.53 Aligned_cols=31 Identities=23% Similarity=0.348 Sum_probs=28.5
Q ss_pred CCCEEEEEECCCCCeEEEEeCCCcEEEEeCC
Q 003840 554 SSLITDVRFSPSMPRLATSSFDKTVRVWDAD 584 (792)
Q Consensus 554 ~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~ 584 (792)
...|.+++|+|...+||.++.||.|.||.++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 4569999999999999999999999999994
No 472
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=93.14 E-value=1.9 Score=50.78 Aligned_cols=125 Identities=13% Similarity=0.167 Sum_probs=82.3
Q ss_pred ceeeeeeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEec-cCCCCEEEEEEC--CCCCeEEEEeCCCc
Q 003840 501 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE-EHSSLITDVRFS--PSMPRLATSSFDKT 577 (792)
Q Consensus 501 ~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~-~h~~~V~~i~fs--pdg~~Lasgs~Dg~ 577 (792)
.+....++......+..+.-|.-++..++-+....+.|||...+.....-. ...+.|.++.|. |++..+++.|....
T Consensus 18 ~w~~t~~~~T~i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~ 97 (631)
T PF12234_consen 18 EWLLTSTFETGISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHH 97 (631)
T ss_pred EEEEEEEEecCCCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcE
Confidence 334445566666667777777766665665556689999998876544333 457889999995 58889999999999
Q ss_pred EEEEeCC-----CCC---ceeEEe--cccC-CCeEEEEEcCCCCeEEEEEeCCCcEEEEEcC
Q 003840 578 VRVWDAD-----NPG---YSLRTF--MGHS-ASVMSLDFHPNKDDLICSCDGDGEIRYWSIN 628 (792)
Q Consensus 578 V~IWdl~-----s~~---~~i~~~--~~h~-~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~ 628 (792)
|.+|.-- +.. ..++.+ ..|+ .+|.+..|.++|. ++ +|+ ++.+.|+|-.
T Consensus 98 v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~-Lv-V~s-GNqlfv~dk~ 156 (631)
T PF12234_consen 98 VLLYTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGT-LV-VGS-GNQLFVFDKW 156 (631)
T ss_pred EEEEEccchhhhcCCcccceeEEEEeecCCCCCccceeEecCCe-EE-EEe-CCEEEEECCC
Confidence 9998542 111 122222 2333 5789999999875 33 232 5677777643
No 473
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=93.13 E-value=18 Score=40.68 Aligned_cols=108 Identities=13% Similarity=-0.001 Sum_probs=60.3
Q ss_pred CeeEEEEecCCCEEEEEEcCCeEEEEECCCCe-----EEEEecC--CCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCC
Q 003840 639 GTAQMRFQPHLGRYLAAAAENVVSILDAETQA-----CRLSLQG--HTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGS 711 (792)
Q Consensus 639 ~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~-----~~~~l~~--h~~~V~sv~~spdg~~Las~s~d~I~IwDl~s~~ 711 (792)
....+.+.+++..++ ++..|.+..-+ ..++ ....+.. ....+.++.|.+++..+++|..+.+.+. ...++
T Consensus 282 ~l~~v~~~~dg~l~l-~g~~G~l~~S~-d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s-~D~G~ 358 (398)
T PLN00033 282 RIQNMGWRADGGLWL-LTRGGGLYVSK-GTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAGGSGILLRS-TDGGK 358 (398)
T ss_pred ceeeeeEcCCCCEEE-EeCCceEEEec-CCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEECCCcEEEe-CCCCc
Confidence 345677777755554 44556654432 2222 1121211 1234888999988888887777644433 34444
Q ss_pred CcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEE
Q 003840 712 EGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELW 750 (792)
Q Consensus 712 ~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~Iw 750 (792)
..............++.+.|.++++ .++.+.+|.|.-|
T Consensus 359 tW~~~~~~~~~~~~ly~v~f~~~~~-g~~~G~~G~il~~ 396 (398)
T PLN00033 359 SWKRDKGADNIAANLYSVKFFDDKK-GFVLGNDGVLLRY 396 (398)
T ss_pred ceeEccccCCCCcceeEEEEcCCCc-eEEEeCCcEEEEe
Confidence 3333332233345678888877655 5666667776554
No 474
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=93.08 E-value=5.4 Score=43.37 Aligned_cols=108 Identities=9% Similarity=0.082 Sum_probs=53.1
Q ss_pred CCCEEEEEeCC-----CeEEEEECCCCce---eEEecc---CCCCEEEEEECCCCCeEEEEeCC-----CcEEEEeCCCC
Q 003840 523 DGKLLATGGHD-----KKAVLWHTDTLKS---KTNLEE---HSSLITDVRFSPSMPRLATSSFD-----KTVRVWDADNP 586 (792)
Q Consensus 523 dg~~Lasgs~D-----g~I~vWdl~t~~~---~~~l~~---h~~~V~~i~fspdg~~Lasgs~D-----g~V~IWdl~s~ 586 (792)
++.+++.|+.+ ..+..||+.+.+. ...+.. ......++. -++++++.|+.+ ..+.+||+.+.
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~--~~~~iYv~GG~~~~~~~~~v~~yd~~~~ 149 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACY--KDGTLYVGGGNRNGKPSNKSYLFNLETQ 149 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEE--ECCEEEEEeCcCCCccCceEEEEcCCCC
Confidence 55677777754 3567777766543 122211 111111222 256666777642 35788888764
Q ss_pred CceeE-EecccCCCeEEEEEcCCCCeEEEEEeCCC----cEEEEEcCCCeeEE
Q 003840 587 GYSLR-TFMGHSASVMSLDFHPNKDDLICSCDGDG----EIRYWSINNGSCTR 634 (792)
Q Consensus 587 ~~~i~-~~~~h~~~V~sl~fspd~~~ll~sgs~Dg----~I~iwdl~~~~~~~ 634 (792)
..... .+... ......+... ++.+++.|+.++ .+.+||+++.+...
T Consensus 150 ~W~~~~~~p~~-~r~~~~~~~~-~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~ 200 (323)
T TIGR03548 150 EWFELPDFPGE-PRVQPVCVKL-QNELYVFGGGSNIAYTDGYKYSPKKNQWQK 200 (323)
T ss_pred CeeECCCCCCC-CCCcceEEEE-CCEEEEEcCCCCccccceEEEecCCCeeEE
Confidence 33221 11111 1111122122 245676777654 35688888766543
No 475
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=92.98 E-value=5.1 Score=45.44 Aligned_cols=30 Identities=17% Similarity=0.411 Sum_probs=20.7
Q ss_pred ceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 003840 725 KFHSCVFHPTYPSLLVIGCYQSLELWNMSE 754 (792)
Q Consensus 725 ~i~si~fspdg~~L~sgs~dg~I~IwDl~~ 754 (792)
.|..+++.+..+.+++...++.|.+|++..
T Consensus 191 ~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 191 KIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp -EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred ceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 366777777777788888888888888764
No 476
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=92.77 E-value=22 Score=40.65 Aligned_cols=59 Identities=14% Similarity=0.139 Sum_probs=40.9
Q ss_pred eecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCce--eEEec-----cCCCCEEEEEECCCC
Q 003840 508 VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKS--KTNLE-----EHSSLITDVRFSPSM 566 (792)
Q Consensus 508 l~~H~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~--~~~l~-----~h~~~V~~i~fspdg 566 (792)
+-..-...+.|+|.|||++|++--..|.|++++..++.. +..+. ........|+|+|+-
T Consensus 25 va~GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 25 LLSGLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred EECCCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 334456789999999998777765579999998665432 21111 135678999999874
No 477
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=92.75 E-value=17 Score=43.47 Aligned_cols=61 Identities=21% Similarity=0.288 Sum_probs=41.2
Q ss_pred eccCCCCEEEEEECCCCCeEEEEeCCCc--EEEEeCCCCCceeEEecccCCCeEEEEEcCCCCeEEE
Q 003840 550 LEEHSSLITDVRFSPSMPRLATSSFDKT--VRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLIC 614 (792)
Q Consensus 550 l~~h~~~V~~i~fspdg~~Lasgs~Dg~--V~IWdl~s~~~~i~~~~~h~~~V~sl~fspd~~~ll~ 614 (792)
+..+...+..+.|+|++..++..+.++. ..+|-+...+ .+..+...|..+.|++++..+++
T Consensus 55 ~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~l~l~~~~g----~~~~~~~~v~~~~~~~~g~~~~~ 117 (620)
T COG1506 55 LLTFGGGVSELRWSPDGSVLAFVSTDGGRVAQLYLVDVGG----LITKTAFGVSDARWSPDGDRIAF 117 (620)
T ss_pred ccccCCcccccccCCCCCEEEEEeccCCCcceEEEEecCC----ceeeeecccccceeCCCCCeEEE
Confidence 4456778889999999999988874433 4455554322 33345566778888888876664
No 478
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.59 E-value=8.1 Score=42.99 Aligned_cols=147 Identities=14% Similarity=0.105 Sum_probs=85.6
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCC--ce-eEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCc---eeE
Q 003840 518 CHFSSDGKLLATGGHDKKAVLWHTDTL--KS-KTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGY---SLR 591 (792)
Q Consensus 518 lafspdg~~Lasgs~Dg~I~vWdl~t~--~~-~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~---~i~ 591 (792)
+-|+..++.|+ +...|-+.-|.+... .. +..-....++|.+|.|++|.+.||+--.|++|-+++...+.. ...
T Consensus 28 vFfDDaNkqlf-avrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~ 106 (657)
T KOG2377|consen 28 VFFDDANKQLF-AVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQ 106 (657)
T ss_pred eeeccCcceEE-EEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHH
Confidence 33443333333 333445555655422 22 222224567999999999999999999999999999843221 122
Q ss_pred EecccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCC----CeeEEEeeCCeeEEEEecCCCEEEEEEc--CCeEEEEE
Q 003840 592 TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN----GSCTRVFKGGTAQMRFQPHLGRYLAAAA--ENVVSILD 665 (792)
Q Consensus 592 ~~~~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~----~~~~~~~~~~~~~v~~sp~~~~lla~s~--dg~I~i~D 665 (792)
+.+.....|..++|..+.+ +.+.. +..+.+|-+.. -+.++..+..+.-..|.++...++.++. .+.+.-+-
T Consensus 107 ~ck~k~~~IlGF~W~~s~e-~A~i~--~~G~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~ 183 (657)
T KOG2377|consen 107 ECKTKNANILGFCWTSSTE-IAFIT--DQGIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFH 183 (657)
T ss_pred HhccCcceeEEEEEecCee-EEEEe--cCCeEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeeccccccccccEE
Confidence 2333455689999987633 33232 34456665432 2344556667777788888776665554 33443344
Q ss_pred CCC
Q 003840 666 AET 668 (792)
Q Consensus 666 ~~t 668 (792)
+++
T Consensus 184 ~~~ 186 (657)
T KOG2377|consen 184 FRA 186 (657)
T ss_pred Eee
Confidence 443
No 479
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=92.39 E-value=2.4 Score=44.09 Aligned_cols=129 Identities=16% Similarity=0.205 Sum_probs=74.8
Q ss_pred EEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC----eEEEEECCCCCC-cceEE--EeecCCCceEEEEEeC
Q 003840 661 VSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVGSGSE-GECVH--ELSCNGNKFHSCVFHP 733 (792)
Q Consensus 661 I~i~D~~t~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d----~I~IwDl~s~~~-~~~i~--~~~~~~~~i~si~fsp 733 (792)
-.+||+.+.+..-..........+-.+.+||++|.+|+.. .+++|+-..... ..... ..-....+.-+...-+
T Consensus 48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~ 127 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLP 127 (243)
T ss_pred EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECC
Confidence 4578888876543222222233334577899999998863 688888654111 11111 1112344556667778
Q ss_pred CCCEEEEEEcCC-eEEEEECCC--CcEEEE--cc------cCCCeEEEEEeCCCCEEEEEeCCCcEE
Q 003840 734 TYPSLLVIGCYQ-SLELWNMSE--NKTMTL--TA------HEGLIAALAVSTETGYVASASHDKFVK 789 (792)
Q Consensus 734 dg~~L~sgs~dg-~I~IwDl~~--~~~~~~--~~------h~~~V~sl~fspdg~~LaSgs~DG~I~ 789 (792)
||+.|++|+... +..+|.-.. .....+ .. ....---+...|||++|+.+..+..|.
T Consensus 128 DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s~i~ 194 (243)
T PF07250_consen 128 DGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGSIIY 194 (243)
T ss_pred CCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCcEEE
Confidence 999999999875 556666432 122211 11 111222456679999999988776554
No 480
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=92.33 E-value=38 Score=42.38 Aligned_cols=137 Identities=12% Similarity=0.112 Sum_probs=77.5
Q ss_pred CEEEEEEc---------CCeEEEEECCC-----Ce-----EEEE--ecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECC
Q 003840 650 GRYLAAAA---------ENVVSILDAET-----QA-----CRLS--LQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVG 708 (792)
Q Consensus 650 ~~lla~s~---------dg~I~i~D~~t-----~~-----~~~~--l~~h~~~V~sv~~spdg~~Las~s~d~I~IwDl~ 708 (792)
.++++|+. .|.++|||+-. ++ .++. .+.-++.|..+|= -+| +|+++..-.|.||++.
T Consensus 1047 ~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP~t~~KlKel~~eE~KGtVsavce-V~G-~l~~~~GqKI~v~~l~ 1124 (1366)
T KOG1896|consen 1047 PYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKPFTKNKLKELYIEEQKGTVSAVCE-VRG-HLLSSQGQKIIVRKLD 1124 (1366)
T ss_pred ceEEEEEeecccccccCcccEEEEEEEEecCCCCCCcccceeeeeehhhcccceEEEEE-ecc-EEEEccCcEEEEEEec
Confidence 45666654 47899998632 21 1111 1234567776653 244 4555555589999995
Q ss_pred CCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCc-EEEEcc---cCCCeEEEEEeCCCC--EEEEE
Q 003840 709 SGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK-TMTLTA---HEGLIAALAVSTETG--YVASA 782 (792)
Q Consensus 709 s~~~~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~-~~~~~~---h~~~V~sl~fspdg~--~LaSg 782 (792)
.......+.-+ +-.+......--.++|++|.-...|.+.-+.+.- .+.+.. ..-.+.++.|--||. +++++
T Consensus 1125 r~~~ligVaFi---D~~~yv~s~~~vknlIl~gDV~ksisfl~fqeep~rlsL~srd~~~l~v~s~EFLVdg~~L~flvs 1201 (1366)
T KOG1896|consen 1125 RDSELIGVAFI---DLPLYVHSMKVVKNLILAGDVMKSISFLGFQEEPYRLSLLSRDFEPLNVYSTEFLVDGSNLSFLVS 1201 (1366)
T ss_pred cCCcceeeEEe---ccceeEEehhhhhhheehhhhhhceEEEEEccCceEEEEeecCCchhhceeeeeEEcCCeeEEEEE
Confidence 44332222222 2223333333345667777777777776654432 223322 233577888877665 57778
Q ss_pred eCCCcEEEe
Q 003840 783 SHDKFVKLW 791 (792)
Q Consensus 783 s~DG~I~IW 791 (792)
..|+.|++|
T Consensus 1202 Da~rNi~vy 1210 (1366)
T KOG1896|consen 1202 DADRNIHVY 1210 (1366)
T ss_pred cCCCcEEEE
Confidence 889999886
No 481
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=92.30 E-value=17 Score=39.92 Aligned_cols=151 Identities=14% Similarity=0.154 Sum_probs=75.4
Q ss_pred EEEEEeCCCeEEEEECCCCceeE--------EeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEecccC
Q 003840 526 LLATGGHDKKAVLWHTDTLKSKT--------NLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHS 597 (792)
Q Consensus 526 ~Lasgs~Dg~I~vWdl~t~~~~~--------~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~~~h~ 597 (792)
++.+|..+|-|..-+...-.... ....-.+.-..|+|...+.-|+.| |...-+|.+.-.+.....+..+.
T Consensus 78 l~~~g~~~Gwv~~~~~~~s~~~~~~~~~~~~~~e~~CGRPLGl~f~~~ggdL~Va--DAYlGL~~V~p~g~~a~~l~~~~ 155 (376)
T KOG1520|consen 78 LKYTGNDDGWVKFADTKDSTNRSQCCDPGSFETEPLCGRPLGIRFDKKGGDLYVA--DAYLGLLKVGPEGGLAELLADEA 155 (376)
T ss_pred EEEeccCceEEEEEeccccccccccCCCcceecccccCCcceEEeccCCCeEEEE--ecceeeEEECCCCCcceeccccc
Confidence 45666666666665552111111 111223556789999888666666 34455665554344433333322
Q ss_pred CCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCCeeEEEEecCCCE---EEEEEcCCeEEEEECCCCeEEEE
Q 003840 598 ASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGR---YLAAAAENVVSILDAETQACRLS 674 (792)
Q Consensus 598 ~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~---lla~s~dg~I~i~D~~t~~~~~~ 674 (792)
... -+.|..+ + ....+|.|++=|..+.- ... .. ++.+..+|.+.-||..+......
T Consensus 156 ~G~-~~kf~N~---l--dI~~~g~vyFTDSSsk~--------------~~r-d~~~a~l~g~~~GRl~~YD~~tK~~~VL 214 (376)
T KOG1520|consen 156 EGK-PFKFLND---L--DIDPEGVVYFTDSSSKY--------------DRR-DFVFAALEGDPTGRLFRYDPSTKVTKVL 214 (376)
T ss_pred cCe-eeeecCc---e--eEcCCCeEEEecccccc--------------chh-heEEeeecCCCccceEEecCcccchhhh
Confidence 221 2222211 1 11124444443332211 110 11 22233478888999877654333
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEeCC
Q 003840 675 LQGHTKPIDSVCWDPSGELLASVSED 700 (792)
Q Consensus 675 l~~h~~~V~sv~~spdg~~Las~s~d 700 (792)
+. .-.-.+.++.++|+.+++.|-..
T Consensus 215 ld-~L~F~NGlaLS~d~sfvl~~Et~ 239 (376)
T KOG1520|consen 215 LD-GLYFPNGLALSPDGSFVLVAETT 239 (376)
T ss_pred hh-cccccccccCCCCCCEEEEEeec
Confidence 32 23345678999999998887655
No 482
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=92.29 E-value=27 Score=43.84 Aligned_cols=78 Identities=17% Similarity=0.129 Sum_probs=39.1
Q ss_pred eeeeecCCCCeEEEEEcC--CCC-EE----EEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEEC---CCC-CeEEEEe
Q 003840 505 ANSVRASTSKVICCHFSS--DGK-LL----ATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFS---PSM-PRLATSS 573 (792)
Q Consensus 505 ~~~l~~H~~~V~~lafsp--dg~-~L----asgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fs---pdg-~~Lasgs 573 (792)
..-..||...|.|..+.- ++. +| ++.+-||+++|=|..- ++.+.......+-+... +.- -+||..-
T Consensus 340 t~mgdG~qR~veC~~C~G~a~~~~L~aPvala~a~DGSl~VGDfNy---IRRI~~dg~v~tIl~L~~t~~sh~Yy~AvsP 416 (1899)
T KOG4659|consen 340 TAMGDGHQRDVECPKCEGKADSISLFAPVALAYAPDGSLIVGDFNY---IRRISQDGQVSTILTLGLTDTSHSYYIAVSP 416 (1899)
T ss_pred EeccCcccccccCCCCCCccccceeeceeeEEEcCCCcEEEccchh---eeeecCCCceEEEEEecCCCccceeEEEecC
Confidence 334468888888876653 222 22 2345788888877542 22222111111111221 111 1455556
Q ss_pred CCCcEEEEeCCC
Q 003840 574 FDKTVRVWDADN 585 (792)
Q Consensus 574 ~Dg~V~IWdl~s 585 (792)
-||+++|=|..+
T Consensus 417 vdgtlyvSdp~s 428 (1899)
T KOG4659|consen 417 VDGTLYVSDPLS 428 (1899)
T ss_pred cCceEEecCCCc
Confidence 677776666554
No 483
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.25 E-value=1.4 Score=54.60 Aligned_cols=161 Identities=16% Similarity=0.247 Sum_probs=86.5
Q ss_pred eCCCeEEEEECCCCceeEEeccCCCCEEEEEEC--------CCCCeEEEEeCCCcEEEEeCCCCC--ceeE------Eec
Q 003840 531 GHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFS--------PSMPRLATSSFDKTVRVWDADNPG--YSLR------TFM 594 (792)
Q Consensus 531 s~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fs--------pdg~~Lasgs~Dg~V~IWdl~s~~--~~i~------~~~ 594 (792)
+.|+.+.+|+++++.....+.+-...|..|..- |.=+++++.+.--.|.|+-+.-.. .... .+.
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~ 175 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS 175 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence 358899999999988888888877777777642 333455555555556666543211 1111 111
Q ss_pred ccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEE
Q 003840 595 GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLS 674 (792)
Q Consensus 595 ~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~ 674 (792)
.....|.||....+|+ +|+ ++.|| .+|.+--...-.-|......++.+.. .-..+. .. +..
T Consensus 176 ~dg~~V~~I~~t~nGR-IF~-~G~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s--------~ls~lv------Ps-~~~ 236 (1311)
T KOG1900|consen 176 VDGVSVNCITYTENGR-IFF-AGRDG--NLYELVYQAEDGWFGSRCRKICLTKS--------VLSSLV------PS-LLS 236 (1311)
T ss_pred cCCceEEEEEeccCCc-EEE-eecCC--CEEEEEEeccCchhhcccccccCchh--------HHHHhh------hh-hhc
Confidence 2345678888655554 553 44566 44443211000000000011110000 000000 00 111
Q ss_pred e-cCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCC
Q 003840 675 L-QGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSG 710 (792)
Q Consensus 675 l-~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~ 710 (792)
+ ..+..+|..++++....++.+-++. .|.+||+...
T Consensus 237 ~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~ 274 (1311)
T KOG1900|consen 237 VPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGGN 274 (1311)
T ss_pred CCCCCCCcceeeEeccccceeeeeccCceEEEEEccCC
Confidence 2 2467789999998888888888877 8999999763
No 484
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=92.19 E-value=4.2 Score=47.89 Aligned_cols=163 Identities=16% Similarity=0.160 Sum_probs=90.3
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeE--Eec-cCCC------CEEEEEECCCCCeEEEEeC-CC---cE
Q 003840 512 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKT--NLE-EHSS------LITDVRFSPSMPRLATSSF-DK---TV 578 (792)
Q Consensus 512 ~~~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~--~l~-~h~~------~V~~i~fspdg~~Lasgs~-Dg---~V 578 (792)
.+.|..+.|..+++.+++...+|.|.+||...+.... .+. .+.. .|.....-....++++.+. ++ .+
T Consensus 129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~y 208 (670)
T PF10395_consen 129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLSY 208 (670)
T ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEEE
Confidence 6789999999999999999999999999993322211 222 1221 2222221112334444443 22 46
Q ss_pred EEEeCCCCCceeEEec---ccCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeeCC-------eeEEEEecC
Q 003840 579 RVWDADNPGYSLRTFM---GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG-------TAQMRFQPH 648 (792)
Q Consensus 579 ~IWdl~s~~~~i~~~~---~h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~-------~~~v~~sp~ 648 (792)
+++.+......+..+. .+........|+-..+.+..- .+++|.+|++...+..+.+.-+ ...+.+.+-
T Consensus 209 kL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l--~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~~~ 286 (670)
T PF10395_consen 209 KLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL--SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLKPP 286 (670)
T ss_pred EEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE--eCCEEEEEEcCCceEEEEEEechhhccccccceEeecC
Confidence 7788732223333222 122222222232222333322 6889999999888776665422 223455444
Q ss_pred CCEEEEEEcCCeEEEEECCCCeEEEEec
Q 003840 649 LGRYLAAAAENVVSILDAETQACRLSLQ 676 (792)
Q Consensus 649 ~~~lla~s~dg~I~i~D~~t~~~~~~l~ 676 (792)
...-+.-+.++.|++.|+.-...+..+.
T Consensus 287 s~nRvLLs~~nkIyLld~~~~siLse~~ 314 (670)
T PF10395_consen 287 SPNRVLLSVNNKIYLLDLKFESILSEFE 314 (670)
T ss_pred CCCeEEEEcCCEEEEEeehhhhhhhhhh
Confidence 4444455667899999987665555444
No 485
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=92.08 E-value=3.2 Score=38.68 Aligned_cols=106 Identities=14% Similarity=0.130 Sum_probs=59.8
Q ss_pred CCCEEEEEEcCCeEEEEECCCCe--------EEEEecCCCCCeEEEEEcC-----CCCEEEEEeCCeEEEEECCCCCCcc
Q 003840 648 HLGRYLAAAAENVVSILDAETQA--------CRLSLQGHTKPIDSVCWDP-----SGELLASVSEDSVRVWTVGSGSEGE 714 (792)
Q Consensus 648 ~~~~lla~s~dg~I~i~D~~t~~--------~~~~l~~h~~~V~sv~~sp-----dg~~Las~s~d~I~IwDl~s~~~~~ 714 (792)
....|++++..|.|.|++..... .+..+ .-...|++|+--+ +...|+.|+...|..||+..... .
T Consensus 9 ~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~L-Nin~~italaaG~l~~~~~~D~LliGt~t~llaYDV~~N~d-~ 86 (136)
T PF14781_consen 9 VHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFL-NINQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDVENNSD-L 86 (136)
T ss_pred CceeEEEEecCCEEEEECCCccccccccccCceeEE-ECCCceEEEEEEecCCCCCcCEEEEeccceEEEEEcccCch-h
Confidence 33445555666666666544321 12222 2345577765433 45688889888999999976532 2
Q ss_pred eEEEeecCCCceEEEEEe---CCCCEEEEEEcCCeEEEEECCCCcEE
Q 003840 715 CVHELSCNGNKFHSCVFH---PTYPSLLVIGCYQSLELWNMSENKTM 758 (792)
Q Consensus 715 ~i~~~~~~~~~i~si~fs---pdg~~L~sgs~dg~I~IwDl~~~~~~ 758 (792)
..+++ ...+.++.+- ....-++..+.+..|.-||....+.+
T Consensus 87 Fyke~---~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~f 130 (136)
T PF14781_consen 87 FYKEV---PDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIF 130 (136)
T ss_pred hhhhC---ccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEE
Confidence 22222 2445555553 22234555555667888887766655
No 486
>KOG2109 consensus WD40 repeat protein [General function prediction only]
Probab=91.91 E-value=0.35 Score=55.43 Aligned_cols=82 Identities=18% Similarity=0.209 Sum_probs=55.7
Q ss_pred ccCCcceeeeeeeecCCCCeEEEEEcCCCCEEEEEeCCC-eEEEEECCCCce-----eEEeccC-----CCCEEEEEECC
Q 003840 496 VSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDK-KAVLWHTDTLKS-----KTNLEEH-----SSLITDVRFSP 564 (792)
Q Consensus 496 ~~~~~~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg-~I~vWdl~t~~~-----~~~l~~h-----~~~V~~i~fsp 564 (792)
+.+-.++..+..|+.|..+|..++|.+.|.+|++++..| .|.++.+..-.+ ...+..| ...|-.|+|+.
T Consensus 299 vkdf~S~a~i~QfkAhkspiSaLcfdqsgsllViasi~g~nVnvfRimet~~t~~~~~qs~~~s~ra~t~aviqdicfs~ 378 (788)
T KOG2109|consen 299 VKDFDSFADIRQFKAHKSPISALCFDQSGSLLVIASITGRNVNVFRIMETVCTVNVSDQSLVVSPRANTAAVIQDICFSE 378 (788)
T ss_pred eecccchhhhhheeeecCcccccccccCceEEEEEeeccceeeeEEeccccccccccccccccchhcchHHHHHHHhhhh
Confidence 344556778888999999999999999999999988665 355555432111 1111111 22355678888
Q ss_pred CCCeEEEEeCCCc
Q 003840 565 SMPRLATSSFDKT 577 (792)
Q Consensus 565 dg~~Lasgs~Dg~ 577 (792)
...+++.++.+|.
T Consensus 379 ~s~~r~~gsc~Ge 391 (788)
T KOG2109|consen 379 VSTIRTAGSCEGE 391 (788)
T ss_pred hcceEeecccCCC
Confidence 8888888887764
No 487
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=91.82 E-value=20 Score=38.21 Aligned_cols=214 Identities=12% Similarity=0.135 Sum_probs=116.5
Q ss_pred CEEEEEECCCCCeEEEEeCCCcEEEEeCCC------CCceeEEecc-----cCCCeEEEEEcCCCC-----------eEE
Q 003840 556 LITDVRFSPSMPRLATSSFDKTVRVWDADN------PGYSLRTFMG-----HSASVMSLDFHPNKD-----------DLI 613 (792)
Q Consensus 556 ~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s------~~~~i~~~~~-----h~~~V~sl~fspd~~-----------~ll 613 (792)
.-+.|+|+|.+.+.++....+...+||... ....+.++.. .....+.+.|+.... -.+
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 457899999998888888889999999971 1222333331 234577888875422 235
Q ss_pred EEEeCCCcEEEEEcCCCee-----EEEee----CCe-eEEEEe--cCCCEEEEEEc-CCeEEEEECCCCeEEEEecCCCC
Q 003840 614 CSCDGDGEIRYWSINNGSC-----TRVFK----GGT-AQMRFQ--PHLGRYLAAAA-ENVVSILDAETQACRLSLQGHTK 680 (792)
Q Consensus 614 ~sgs~Dg~I~iwdl~~~~~-----~~~~~----~~~-~~v~~s--p~~~~lla~s~-dg~I~i~D~~t~~~~~~l~~h~~ 680 (792)
+.+++||+|.-|...-+.. ...+. +.+ .-+++. ..+.+|+++.- .+.|.|||..-.++... .....
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~-g~F~D 182 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLP-GSFID 182 (336)
T ss_pred EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCC-CCccC
Confidence 5788999999998533222 11222 111 113333 23455555443 78899998654332110 00011
Q ss_pred CeEEEEEcC------CCCEEEE--------------EeCCeEEEEECCCCCCcceEEEeec--CCCceEEEEEeC-----
Q 003840 681 PIDSVCWDP------SGELLAS--------------VSEDSVRVWTVGSGSEGECVHELSC--NGNKFHSCVFHP----- 733 (792)
Q Consensus 681 ~V~sv~~sp------dg~~Las--------------~s~d~I~IwDl~s~~~~~~i~~~~~--~~~~i~si~fsp----- 733 (792)
+-.-.-|.| .++++++ .+.+.|-+||+.- ..++++.. .-+..+.++..|
T Consensus 183 P~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G----~l~~r~as~g~LNaPWG~a~APa~FG~ 258 (336)
T TIGR03118 183 PALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNG----QLLRRVASSGRLNAPWGLAIAPESFGS 258 (336)
T ss_pred CCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCC----cEEEEeccCCcccCCceeeeChhhhCC
Confidence 100001111 1222222 1122678888753 45555432 223455666644
Q ss_pred -CCCEEEEEEcCCeEEEEECCCCcEE-EEcccC------CCeEEEEEeC
Q 003840 734 -TYPSLLVIGCYQSLELWNMSENKTM-TLTAHE------GLIAALAVST 774 (792)
Q Consensus 734 -dg~~L~sgs~dg~I~IwDl~~~~~~-~~~~h~------~~V~sl~fsp 774 (792)
.+..|+---.||+|.+||..+++.+ .+.... ..++.|.|..
T Consensus 259 ~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 259 LSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred CCCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence 3454554456899999999988866 333322 3467888865
No 488
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=91.68 E-value=22 Score=38.36 Aligned_cols=202 Identities=11% Similarity=0.068 Sum_probs=93.9
Q ss_pred CCCCeEEEEEcCCCCEEEEEe-CCCeEEEEECCCCce---------------eEEeccCCCCEEEEEECCCC-CeEEEEe
Q 003840 511 STSKVICCHFSSDGKLLATGG-HDKKAVLWHTDTLKS---------------KTNLEEHSSLITDVRFSPSM-PRLATSS 573 (792)
Q Consensus 511 H~~~V~~lafspdg~~Lasgs-~Dg~I~vWdl~t~~~---------------~~~l~~h~~~V~~i~fspdg-~~Lasgs 573 (792)
+..+|+++...+.-+.|++-+ ....+++|++..... ....-.|......+.+.... ..++++.
T Consensus 41 ~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A 120 (302)
T smart00036 41 GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLVIRKNVLTKIPDTKGCHLCAVVNGKRSLFLCVA 120 (302)
T ss_pred CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCccccccccceEeCCcCCceEEEEEEcCCCcEEEEEE
Confidence 355799999998877666654 334499999853331 01122344433333333222 2344555
Q ss_pred CCCcEEEEeCCCCCceeEEec-------ccCCCeEEEEEcCCC-CeEEEEEeCCCcEEEEEcCC--CeeEE-----EeeC
Q 003840 574 FDKTVRVWDADNPGYSLRTFM-------GHSASVMSLDFHPNK-DDLICSCDGDGEIRYWSINN--GSCTR-----VFKG 638 (792)
Q Consensus 574 ~Dg~V~IWdl~s~~~~i~~~~-------~h~~~V~sl~fspd~-~~ll~sgs~Dg~I~iwdl~~--~~~~~-----~~~~ 638 (792)
...+|.+|...........+. .-...+..+..+++. ...++.|+..+...++++.. ..... ....
T Consensus 121 ~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~lcvG~~~~~~~~~~~~~~~~~~~d~sl~~~~~~ 200 (302)
T smart00036 121 LQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGICIGSDKGGGDVVQFHESLVSKEDLSLPFLSEE 200 (302)
T ss_pred cCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceEEEEEEcCCCCeEEEEeecccccccccccccccc
Confidence 566777765543211111111 111233333323221 23454555433344444432 11000 0011
Q ss_pred ---CeeEEEEecCCCEEEEEEcCCeEEEEECCC-CeEE-EEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCc
Q 003840 639 ---GTAQMRFQPHLGRYLAAAAENVVSILDAET-QACR-LSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEG 713 (792)
Q Consensus 639 ---~~~~v~~sp~~~~lla~s~dg~I~i~D~~t-~~~~-~~l~~h~~~V~sv~~spdg~~Las~s~d~I~IwDl~s~~~~ 713 (792)
...++...++ +.++.+..+. ..+.|... .... ..+. -.....++++. ..||++-..+.|.||++.++
T Consensus 201 ~~~~p~~i~~l~~-~e~Llc~~~~-~v~Vn~~G~~~~r~~~l~-w~~~p~~~~~~--~pyll~~~~~~ievr~l~~~--- 272 (302)
T smart00036 201 TSLKPISVVQVPR-DEFLLCYDEF-GVFVNLYGKRRSRNPILH-WEFMPESFAYH--SPYLLAFHDNGIEIRSIKTG--- 272 (302)
T ss_pred cccCceEEEEECC-CeEEEEECcE-EEEEeCCCCccccceEEE-cCCcccEEEEE--CCEEEEEcCCcEEEEECCCC---
Confidence 1122222222 4455544444 33344433 1111 1122 23445667766 46777777778999999887
Q ss_pred ceEEEee
Q 003840 714 ECVHELS 720 (792)
Q Consensus 714 ~~i~~~~ 720 (792)
..+.++.
T Consensus 273 ~l~q~i~ 279 (302)
T smart00036 273 ELLQELA 279 (302)
T ss_pred ceEEEEe
Confidence 4444443
No 489
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=91.60 E-value=5.6 Score=37.16 Aligned_cols=112 Identities=13% Similarity=0.085 Sum_probs=65.8
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCc--------eeEEeccCCCCEEEEEECC-----CCCeEEEEeCCCcEEEEeC
Q 003840 517 CCHFSSDGKLLATGGHDKKAVLWHTDTLK--------SKTNLEEHSSLITDVRFSP-----SMPRLATSSFDKTVRVWDA 583 (792)
Q Consensus 517 ~lafspdg~~Lasgs~Dg~I~vWdl~t~~--------~~~~l~~h~~~V~~i~fsp-----dg~~Lasgs~Dg~V~IWdl 583 (792)
.-.|......|++++..|+|.|++..... .+..| .-...|++|+--+ +...|+.|+.. .|..||+
T Consensus 3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~L-Nin~~italaaG~l~~~~~~D~LliGt~t-~llaYDV 80 (136)
T PF14781_consen 3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFL-NINQEITALAAGRLKPDDGRDCLLIGTQT-SLLAYDV 80 (136)
T ss_pred EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEE-ECCCceEEEEEEecCCCCCcCEEEEeccc-eEEEEEc
Confidence 44566666688889999999999865332 22223 2445677765433 23466666654 5999999
Q ss_pred CCCCceeEEecccCCCeEEEEEcCC---CCeEEEEEeCCCcEEEEEcCCCeeE
Q 003840 584 DNPGYSLRTFMGHSASVMSLDFHPN---KDDLICSCDGDGEIRYWSINNGSCT 633 (792)
Q Consensus 584 ~s~~~~i~~~~~h~~~V~sl~fspd---~~~ll~sgs~Dg~I~iwdl~~~~~~ 633 (792)
++.... .++.-.+.|.+|.+-.- ...++++| .+..|.-||..-.+..
T Consensus 81 ~~N~d~--Fyke~~DGvn~i~~g~~~~~~~~l~ivG-Gncsi~Gfd~~G~e~f 130 (136)
T PF14781_consen 81 ENNSDL--FYKEVPDGVNAIVIGKLGDIPSPLVIVG-GNCSIQGFDYEGNEIF 130 (136)
T ss_pred ccCchh--hhhhCccceeEEEEEecCCCCCcEEEEC-ceEEEEEeCCCCcEEE
Confidence 874332 23334466777776321 22344344 3666666666544433
No 490
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=91.58 E-value=4 Score=48.59 Aligned_cols=102 Identities=14% Similarity=0.111 Sum_probs=66.5
Q ss_pred CCCEEEEEeCC-eEEEEECCCC-----------C------CcceEEEeecCCCceEEEEEe--CCCCEEEEEEcCCeEEE
Q 003840 690 SGELLASVSED-SVRVWTVGSG-----------S------EGECVHELSCNGNKFHSCVFH--PTYPSLLVIGCYQSLEL 749 (792)
Q Consensus 690 dg~~Las~s~d-~I~IwDl~s~-----------~------~~~~i~~~~~~~~~i~si~fs--pdg~~L~sgs~dg~I~I 749 (792)
+..+|+.|.+| .|.+|.+++- + ..++...+. .....++++++ ...++||+++....|.|
T Consensus 113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTV 191 (717)
T PF08728_consen 113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTV 191 (717)
T ss_pred CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEE
Confidence 55678888877 9999976321 0 011122222 23468899998 77888888888887777
Q ss_pred EECCC--CcEE--EEcccCCCeEEEEEeCCC---C---EEEEEeCCCcEEEeC
Q 003840 750 WNMSE--NKTM--TLTAHEGLIAALAVSTET---G---YVASASHDKFVKLWK 792 (792)
Q Consensus 750 wDl~~--~~~~--~~~~h~~~V~sl~fspdg---~---~LaSgs~DG~I~IWd 792 (792)
|-+.. .+.. ....|...|-+|+|-++. . +|++++-.|.|.+|+
T Consensus 192 Faf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~ 244 (717)
T PF08728_consen 192 FAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFK 244 (717)
T ss_pred EEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEE
Confidence 75443 2222 223467789999997643 2 777888899988874
No 491
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=91.54 E-value=25 Score=40.50 Aligned_cols=264 Identities=14% Similarity=0.088 Sum_probs=127.5
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEec-cCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEe
Q 003840 515 VICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE-EHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTF 593 (792)
Q Consensus 515 V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~-~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~ 593 (792)
|..+..+..| .|.+|+.+| |++.+.+..+...-.. -..+.|..+.-...| .+..|+..|..+ +.+...+..+...
T Consensus 208 I~al~~d~qg-~LWVGTdqG-v~~~e~~G~~~sn~~~~lp~~~I~ll~qD~qG-~lWiGTenGl~r-~~l~rq~Lq~~~~ 283 (671)
T COG3292 208 INALIADVQG-RLWVGTDQG-VYLQEAEGWRASNWGPMLPSGNILLLVQDAQG-ELWIGTENGLWR-TRLPRQGLQIPLS 283 (671)
T ss_pred HHHHHHHhcC-cEEEEeccc-eEEEchhhccccccCCCCcchheeeeecccCC-CEEEeeccccee-EecCCCCcccccc
Confidence 4444444444 466676665 6666655522221111 122334443333333 566676666332 3333323222222
Q ss_pred ccc--CCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEe---eCCeeE-EEEec--CCCEEEEEEcCCeEEEEE
Q 003840 594 MGH--SASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF---KGGTAQ-MRFQP--HLGRYLAAAAENVVSILD 665 (792)
Q Consensus 594 ~~h--~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~~~~~~~---~~~~~~-v~~sp--~~~~lla~s~dg~I~i~D 665 (792)
+.| -..|.++....+|. +.+++.++.+++-+-. ......+ ++.+.. ++..+ .+..+-...+-|.+.+-+
T Consensus 284 ~~~l~~S~vnsL~~D~dGs--LWv~t~~giv~~~~a~-w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~L~van 360 (671)
T COG3292 284 KMHLGVSTVNSLWLDTDGS--LWVGTYGGIVRYLTAD-WKRMAVINDSDGGVSQYEAVAPALLSWGVRQLNSIGELMVAN 360 (671)
T ss_pred ccCCccccccceeeccCCC--EeeeccCceEEEecch-hhheeeeecCCCchhhhhccCchhcccceeeccccceEEEec
Confidence 222 23455666666654 4466666666654432 1111111 111111 11111 122233333344555555
Q ss_pred CCCCeEEEEec-CCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEeec-CCCceEEEEEeCCCCEEEEEEc
Q 003840 666 AETQACRLSLQ-GHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSC-NGNKFHSCVFHPTYPSLLVIGC 743 (792)
Q Consensus 666 ~~t~~~~~~l~-~h~~~V~sv~~spdg~~Las~s~d~I~IwDl~s~~~~~~i~~~~~-~~~~i~si~fspdg~~L~sgs~ 743 (792)
..++..+.... .....|+.+++..++.+.+....+.+..|+..+ ....+.+..+ ....+..+.-.|+++ |..|+.
T Consensus 361 ~stG~~v~sv~q~Rg~nit~~~~d~~g~lWlgs~q~GLsrl~n~n--~~avlde~agl~ss~V~aived~dns-LWIGTs 437 (671)
T COG3292 361 GSTGELVRSVHQLRGMNITTTLEDSRGRLWLGSMQNGLSRLDNKN--EWAVLDEDAGLPSSEVSAIVEDPDNS-LWIGTS 437 (671)
T ss_pred CCCCcEEEEeeeccccccchhhhccCCcEEEEecccchhhhccCC--cccccccccCCcccceeeeeecCCCC-EEEecc
Confidence 56665544432 234568888888866554444444788888765 1122322222 234577777888888 888888
Q ss_pred CCeEEEEECCCCcEEE---Eccc---CCCeEEEEEeCCCCEEEEEeCCCcEEEe
Q 003840 744 YQSLELWNMSENKTMT---LTAH---EGLIAALAVSTETGYVASASHDKFVKLW 791 (792)
Q Consensus 744 dg~I~IwDl~~~~~~~---~~~h---~~~V~sl~fspdg~~LaSgs~DG~I~IW 791 (792)
+|.++. +.+.++... +..| .+.|..+.+.++|++-+.++ +| |..|
T Consensus 438 ~Glvk~-~pe~~~v~n~ln~~~~~l~~s~~~~lg~~~~g~Lw~a~g-~g-va~~ 488 (671)
T COG3292 438 GGLVKR-DPESGRVLNLLNPGSHGLDGSRVEQLGLGPDGRLWLAAG-SG-VAAW 488 (671)
T ss_pred CCeEec-CccccchhcccccccCcCCcchhhhhccCCCCceEEEec-ce-eeee
Confidence 876554 444443331 1122 23466778888887644332 33 4444
No 492
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=91.46 E-value=25 Score=38.44 Aligned_cols=141 Identities=17% Similarity=0.239 Sum_probs=83.4
Q ss_pred CCCEEEEEECCCCCeEEEEeCCCc------EEEEeCCCCC---cee-----EEecccCC--------CeEEEEEcCCCCe
Q 003840 554 SSLITDVRFSPSMPRLATSSFDKT------VRVWDADNPG---YSL-----RTFMGHSA--------SVMSLDFHPNKDD 611 (792)
Q Consensus 554 ~~~V~~i~fspdg~~Lasgs~Dg~------V~IWdl~s~~---~~i-----~~~~~h~~--------~V~sl~fspd~~~ 611 (792)
-+.+..|.+.+++..+++.+.+|. +..+++.... ..+ ..+....+ ...+|++.+++.
T Consensus 19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~- 97 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGS- 97 (326)
T ss_pred cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCC-
Confidence 355778888876667777777777 6655554311 111 11111111 345788855554
Q ss_pred EEEEEeCC------CcEEEEEcCCCeeEEEe------------------eCCeeEEEEecCCCEEEEEEc-----CC---
Q 003840 612 LICSCDGD------GEIRYWSINNGSCTRVF------------------KGGTAQMRFQPHLGRYLAAAA-----EN--- 659 (792)
Q Consensus 612 ll~sgs~D------g~I~iwdl~~~~~~~~~------------------~~~~~~v~~sp~~~~lla~s~-----dg--- 659 (792)
++++.-.+ ..|+.++.. ++.+..+ +.+...+++++++..|+++.. |+
T Consensus 98 ~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~ 176 (326)
T PF13449_consen 98 FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRA 176 (326)
T ss_pred EEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccc
Confidence 55465556 678888866 5554333 123456899999997777765 22
Q ss_pred --------eEEEEECCC-C----eEEEEecC-----CCCCeEEEEEcCCCCEEEE
Q 003840 660 --------VVSILDAET-Q----ACRLSLQG-----HTKPIDSVCWDPSGELLAS 696 (792)
Q Consensus 660 --------~I~i~D~~t-~----~~~~~l~~-----h~~~V~sv~~spdg~~Las 696 (792)
.|..||..+ + ...+.+.. ....|..+.+.+++++|+.
T Consensus 177 ~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 177 NPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred ccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 244456554 2 22333332 3466888999999997774
No 493
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=91.35 E-value=39 Score=40.51 Aligned_cols=61 Identities=26% Similarity=0.267 Sum_probs=42.0
Q ss_pred eecCCCCeEEEEEcCCCCEEEEEeCCCe--EEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEE
Q 003840 508 VRASTSKVICCHFSSDGKLLATGGHDKK--AVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLAT 571 (792)
Q Consensus 508 l~~H~~~V~~lafspdg~~Lasgs~Dg~--I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Las 571 (792)
...+...+.++.|+|||.+++..+.++. ..+|-+.... .+..+...|....|++++..++.
T Consensus 55 ~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~l~l~~~~g---~~~~~~~~v~~~~~~~~g~~~~~ 117 (620)
T COG1506 55 LLTFGGGVSELRWSPDGSVLAFVSTDGGRVAQLYLVDVGG---LITKTAFGVSDARWSPDGDRIAF 117 (620)
T ss_pred ccccCCcccccccCCCCCEEEEEeccCCCcceEEEEecCC---ceeeeecccccceeCCCCCeEEE
Confidence 4456677889999999999998874332 3334332221 44456677888899999887776
No 494
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=91.13 E-value=1.3 Score=45.57 Aligned_cols=62 Identities=16% Similarity=0.195 Sum_probs=48.4
Q ss_pred EEeCCCCEEEEEEcCCeEEEEECCCCcEEE--------Ec-------ccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 003840 730 VFHPTYPSLLVIGCYQSLELWNMSENKTMT--------LT-------AHEGLIAALAVSTETGYVASASHDKFVKLWK 792 (792)
Q Consensus 730 ~fspdg~~L~sgs~dg~I~IwDl~~~~~~~--------~~-------~h~~~V~sl~fspdg~~LaSgs~DG~I~IWd 792 (792)
.+..++.+|++.+.+|.+++||+.+.+.+. +. .....|..+.++.+|.-|++-+ +|..+.|+
T Consensus 17 ~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~ 93 (219)
T PF07569_consen 17 FLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYS 93 (219)
T ss_pred EEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEec
Confidence 355678899999999999999999987651 11 3556788999998888777665 57888885
No 495
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=91.00 E-value=14 Score=45.26 Aligned_cols=130 Identities=11% Similarity=0.046 Sum_probs=73.1
Q ss_pred CCcEEEEEcC-CCeeEE---EeeCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecC--CCCCeEEEEEcCCCC
Q 003840 619 DGEIRYWSIN-NGSCTR---VFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQG--HTKPIDSVCWDPSGE 692 (792)
Q Consensus 619 Dg~I~iwdl~-~~~~~~---~~~~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t~~~~~~l~~--h~~~V~sv~~spdg~ 692 (792)
+|.++.|++- .++.+. ...-.....++.|..+++ .++....+++||+-..++++..+. ....|..+.|. +.
T Consensus 911 ~g~~ytyk~~~~g~~lellh~T~~~~~v~Ai~~f~~~~-LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~--~~ 987 (1205)
T KOG1898|consen 911 SGFVYTYKFVRNGDKLELLHKTEIPGPVGAICPFQGRV-LAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTY--GA 987 (1205)
T ss_pred CCceEEEEEEecCceeeeeeccCCCccceEEeccCCEE-EEecccEEEEeeCChHHHHhhhhhccCceEEEEEeec--ce
Confidence 3456666653 233222 222233446677777754 455668999999988766554332 34567777764 45
Q ss_pred EEEEEeCC-eEEEEECCCCCCcceEEEeecCC--CceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 003840 693 LLASVSED-SVRVWTVGSGSEGECVHELSCNG--NKFHSCVFHPTYPSLLVIGCYQSLELWNMSE 754 (792)
Q Consensus 693 ~Las~s~d-~I~IwDl~s~~~~~~i~~~~~~~--~~i~si~fspdg~~L~sgs~dg~I~IwDl~~ 754 (792)
.|++|... .|.++..+... ..+..+.+.. ..++++. .-|...++.+..-|.+++..+..
T Consensus 988 RI~VgD~qeSV~~~~y~~~~--n~l~~fadD~~pR~Vt~~~-~lD~~tvagaDrfGNi~~vR~P~ 1049 (1205)
T KOG1898|consen 988 RIVVGDIQESVHFVRYRRED--NQLIVFADDPVPRHVTALE-LLDYDTVAGADRFGNIAVVRIPP 1049 (1205)
T ss_pred EEEEeeccceEEEEEEecCC--CeEEEEeCCCccceeeEEE-EecCCceeeccccCcEEEEECCC
Confidence 56666544 55554444322 2333333222 2344443 44666688888888888877643
No 496
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=90.86 E-value=2.8 Score=48.87 Aligned_cols=107 Identities=14% Similarity=0.203 Sum_probs=63.2
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCceeEEe
Q 003840 514 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTF 593 (792)
Q Consensus 514 ~V~~lafspdg~~Lasgs~Dg~I~vWdl~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl~s~~~~i~~~ 593 (792)
.++++.-+|.|..++.+..||+|++|++...+..+... ...+-..+.|...| |+++..|..+.-|.-+ +.....|
T Consensus 16 ~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~-~~~p~~nlv~tnhg--l~~~tsdrr~la~~~d--gvvqqqf 90 (1636)
T KOG3616|consen 16 FTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICE-EAKPKENLVFTNHG--LVTATSDRRALAWKED--GVVQQQF 90 (1636)
T ss_pred eeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhh-hcCCccceeeeccc--eEEEeccchhheeecc--Ccchhhc
Confidence 46778888999999999999999999987544322222 22333455665544 7777778888888654 2222222
Q ss_pred cc---cCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEc
Q 003840 594 MG---HSASVMSLDFHPNKDDLICSCDGDGEIRYWSI 627 (792)
Q Consensus 594 ~~---h~~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl 627 (792)
.- ......++...|...+++ |.--|.|.-+|.
T Consensus 91 dyndqsekefss~~cdptaqnvv--gtlcggv~q~dc 125 (1636)
T KOG3616|consen 91 DYNDQSEKEFSSILCDPTAQNVV--GTLCGGVEQFDC 125 (1636)
T ss_pred cccchhhhhccceecCchhhhhh--hhhccceeeehH
Confidence 11 122344555555544433 333455555553
No 497
>PRK05560 DNA gyrase subunit A; Validated
Probab=90.75 E-value=50 Score=40.78 Aligned_cols=259 Identities=10% Similarity=0.044 Sum_probs=128.6
Q ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCce---------eEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeC---CCC
Q 003840 519 HFSSDGKLLATGGHDKKAVLWHTDTLKS---------KTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDA---DNP 586 (792)
Q Consensus 519 afspdg~~Lasgs~Dg~I~vWdl~t~~~---------~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~V~IWdl---~s~ 586 (792)
.+-++...+++-+.+|.|+.-++..... ...++.. +.+..+........|+..+..|.+....+ ...
T Consensus 493 dlI~~E~v~vllS~~GyIKri~~~~~~~~~~~~~g~~~~klKe~-D~l~~~~~~~t~d~LllfTs~Grv~~l~v~~iP~~ 571 (805)
T PRK05560 493 DLIPEEDVVVTLTHGGYIKRTPLDEYRAQRRGGKGVSGAKTKED-DFVEHLFVASTHDTLLFFTNRGRVYRLKVYEIPEA 571 (805)
T ss_pred hccCCCCEEEEEeCCCEEEEcchhhhhhhcccCCCccccccCCC-CeeEEEEEecCCCeEEEEecCCeEEEEEhhhCcCC
Confidence 3445677888999999998876654321 1112222 34444444455556777777777665543 321
Q ss_pred -----Ccee---EEecccCCCeEEEEEcCC-CCeEEEEEeCCCcEEEEEcCCCe-------eEEEeeC--CeeEEEEecC
Q 003840 587 -----GYSL---RTFMGHSASVMSLDFHPN-KDDLICSCDGDGEIRYWSINNGS-------CTRVFKG--GTAQMRFQPH 648 (792)
Q Consensus 587 -----~~~i---~~~~~h~~~V~sl~fspd-~~~ll~sgs~Dg~I~iwdl~~~~-------~~~~~~~--~~~~v~~sp~ 648 (792)
+..+ ..+.....-|.++.+... ...+++..+.+|.++.-++.... ....++. ....+.....
T Consensus 572 ~~~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~GyiKRi~l~~~~~~~r~G~~~ikLke~D~lv~v~~~~~ 651 (805)
T PRK05560 572 SRTARGRPIVNLLPLEPGEKITAILPVREFDDDKYLFFATKNGTVKKTSLSEFSNIRSNGIIAINLDEGDELIGVRLTDG 651 (805)
T ss_pred CcCCCCeEHHHhcCCCCCceEEEEEeccCCCCCCEEEEEeCCCEEEEEEhHHhhhcccCCceeeccCCCCEEEEEEEeCC
Confidence 1222 112222333445555421 23355688889999987765322 1112222 1222333344
Q ss_pred CCEEEEEEcCCeEEEEECCC---------CeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCC------C
Q 003840 649 LGRYLAAAAENVVSILDAET---------QACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGS------E 712 (792)
Q Consensus 649 ~~~lla~s~dg~I~i~D~~t---------~~~~~~l~~h~~~V~sv~~spdg~~Las~s~d-~I~IwDl~s~~------~ 712 (792)
...+++.+..|.+..+.... |.....+...+.-+..+.+.+++.+++..+.. .++...+.... .
T Consensus 652 ~d~lll~T~~Gr~~r~~~~eIp~~gr~~~Gv~~i~L~~~E~Vv~~~~v~~~~~~il~vTk~G~iKr~~l~e~~~~~R~~k 731 (805)
T PRK05560 652 DDDILLATKNGKAIRFPESDVRPMGRTARGVRGIKLREGDEVVSMDVVREDSQEILTVTENGYGKRTPVSEYRLQGRGGK 731 (805)
T ss_pred CCEEEEEECCCcEEEEEhhhcCccCcccCCcccccCCCCCEEEEEEEEcCCCcEEEEEEeCCeEEEEEHHHhhccCCCCC
Confidence 56788888888777665532 12222232222223334444443355555555 66666543211 1
Q ss_pred cceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEE
Q 003840 713 GECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVAS 781 (792)
Q Consensus 713 ~~~i~~~~~~~~~i~si~fspdg~~L~sgs~dg~I~IwDl~~~~~~~~~~h~~~V~sl~fspdg~~LaS 781 (792)
......+......+..+........+++.+.+|.+..++...-.. .......|..+.+..+ ..++.
T Consensus 732 G~~~lkl~~~~d~lv~v~~v~~~~~v~i~T~~G~~lrf~~~eI~~--~gR~a~GVk~I~L~~~-D~V~~ 797 (805)
T PRK05560 732 GVITIKITEKNGKLVGALPVDDDDEIMLITDSGKLIRTRVSEISI--TGRNTQGVRLIRLDEG-DKVVS 797 (805)
T ss_pred cEEeeeccCCCCeEEEEEEecCCCeEEEEecCCeEEEEEHHHCCc--cccCCCCeeeEecCCC-CEEEE
Confidence 112222222233444443334445577777788777777654221 1222344666666443 34443
No 498
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.72 E-value=2.2 Score=52.95 Aligned_cols=72 Identities=11% Similarity=0.171 Sum_probs=47.7
Q ss_pred ecCCCceEEEEEeCCCCEEEEEEcCCeEEEE--ECCCC-------c--------------EEEEc-ccCCCeEEEEEeCC
Q 003840 720 SCNGNKFHSCVFHPTYPSLLVIGCYQSLELW--NMSEN-------K--------------TMTLT-AHEGLIAALAVSTE 775 (792)
Q Consensus 720 ~~~~~~i~si~fspdg~~L~sgs~dg~I~Iw--Dl~~~-------~--------------~~~~~-~h~~~V~sl~fspd 775 (792)
...+..|.++....+|+.+++ |.||.|+-+ ...++ + ...+. .+..+|..+++...
T Consensus 175 ~~dg~~V~~I~~t~nGRIF~~-G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~S 253 (1311)
T KOG1900|consen 175 SVDGVSVNCITYTENGRIFFA-GRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNS 253 (1311)
T ss_pred ecCCceEEEEEeccCCcEEEe-ecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccc
Confidence 344566888887778875554 455544322 22111 0 11223 46779999999988
Q ss_pred CCEEEEEeCCCcEEEeC
Q 003840 776 TGYVASASHDKFVKLWK 792 (792)
Q Consensus 776 g~~LaSgs~DG~I~IWd 792 (792)
..++.+-++.|+|.+||
T Consensus 254 R~IlY~lsek~~v~~Y~ 270 (1311)
T KOG1900|consen 254 RNILYVLSEKGTVSAYD 270 (1311)
T ss_pred cceeeeeccCceEEEEE
Confidence 88999999999999996
No 499
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=90.49 E-value=52 Score=40.51 Aligned_cols=155 Identities=14% Similarity=0.202 Sum_probs=90.8
Q ss_pred CCCCeEEEEEc---C----CCCEEEEEeCCCeEEEEECC------C---------CceeEEecc---CCCCEEEEEECC-
Q 003840 511 STSKVICCHFS---S----DGKLLATGGHDKKAVLWHTD------T---------LKSKTNLEE---HSSLITDVRFSP- 564 (792)
Q Consensus 511 H~~~V~~lafs---p----dg~~Lasgs~Dg~I~vWdl~------t---------~~~~~~l~~---h~~~V~~i~fsp- 564 (792)
-..+|..|+|. . ..++|++= ....+.|+... . ...+..+.. ......+|+|+|
T Consensus 78 ~~~PI~qI~fa~~~~~~~~~~~~l~Vr-t~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~ 156 (765)
T PF10214_consen 78 DGSPIKQIKFATLSESFDEKSRWLAVR-TETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPW 156 (765)
T ss_pred CCCCeeEEEecccccccCCcCcEEEEE-cCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccC
Confidence 45678888887 2 22355554 35566776611 1 123333432 345678999999
Q ss_pred CCCeEEEEeCCCcEEEEeCCCC----CceeEEecccC----------CCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCC
Q 003840 565 SMPRLATSSFDKTVRVWDADNP----GYSLRTFMGHS----------ASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG 630 (792)
Q Consensus 565 dg~~Lasgs~Dg~V~IWdl~s~----~~~i~~~~~h~----------~~V~sl~fspd~~~ll~sgs~Dg~I~iwdl~~~ 630 (792)
+...||+....|...|||+... ...+.....+. ..-..|.|.++.+.+| .++ ...+.++|+++.
T Consensus 157 ~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lL-v~~-r~~l~~~d~~~~ 234 (765)
T PF10214_consen 157 DQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLL-VCN-RSKLMLIDFESN 234 (765)
T ss_pred ccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEE-EEc-CCceEEEECCCC
Confidence 4568999999999999999211 11121111122 2234788987766666 443 677899999987
Q ss_pred eeEE-Eee----CCeeEEEEecCCCEEEEEEcCCeEEEEECCC
Q 003840 631 SCTR-VFK----GGTAQMRFQPHLGRYLAAAAENVVSILDAET 668 (792)
Q Consensus 631 ~~~~-~~~----~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t 668 (792)
.... ... ..+..+.-++.....+..-....|..+|+..
T Consensus 235 ~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLTs~eiiw~~~~~ 277 (765)
T PF10214_consen 235 WQTEYLVTAKTWSWILDVKRSPDNPSHVFILTSKEIIWLDVKS 277 (765)
T ss_pred CccchhccCCChhheeeEEecCCccceEEEEecCeEEEEEccC
Confidence 6543 221 2344555555533333333447777777776
No 500
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=90.43 E-value=28 Score=37.30 Aligned_cols=185 Identities=15% Similarity=0.128 Sum_probs=0.0
Q ss_pred CeEEEEEcCCCCEEEEEeCC------------CeEEEEECCCCceeEEec------cCCCCEEEEEECCCCC------eE
Q 003840 514 KVICCHFSSDGKLLATGGHD------------KKAVLWHTDTLKSKTNLE------EHSSLITDVRFSPSMP------RL 569 (792)
Q Consensus 514 ~V~~lafspdg~~Lasgs~D------------g~I~vWdl~t~~~~~~l~------~h~~~V~~i~fspdg~------~L 569 (792)
.|..+....++++-+.=+.- -+|.+||+.+.+.++++. .....+.++++..... ..
T Consensus 2 sV~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aY 81 (287)
T PF03022_consen 2 SVQRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAY 81 (287)
T ss_dssp -EEEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEE
T ss_pred cccEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEE
Q ss_pred EEEeCCCcEEEEeCCCCCceeEEeccc-------------------CCCeEEEEEcC---CCCeEEEEEeCCCcEEEEEc
Q 003840 570 ATSSFDKTVRVWDADNPGYSLRTFMGH-------------------SASVMSLDFHP---NKDDLICSCDGDGEIRYWSI 627 (792)
Q Consensus 570 asgs~Dg~V~IWdl~s~~~~i~~~~~h-------------------~~~V~sl~fsp---d~~~ll~sgs~Dg~I~iwdl 627 (792)
++=+..+-|.|||+.+ +...+.+..+ ...+..++.+| +++.+++..-....++--..
T Consensus 82 ItD~~~~glIV~dl~~-~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T 160 (287)
T PF03022_consen 82 ITDSGGPGLIVYDLAT-GKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPT 160 (287)
T ss_dssp EEETTTCEEEEEETTT-TEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEH
T ss_pred EeCCCcCcEEEEEccC-CcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEH
Q ss_pred ---------------CCCeeEEEeeCCeeEEEEecCCCEEEEEEcCCeEEEEECCC-----CeEEEEecCC-CCCeEEEE
Q 003840 628 ---------------NNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAET-----QACRLSLQGH-TKPIDSVC 686 (792)
Q Consensus 628 ---------------~~~~~~~~~~~~~~~v~~sp~~~~lla~s~dg~I~i~D~~t-----~~~~~~l~~h-~~~V~sv~ 686 (792)
..-+.+.........+++.+.+..+++--..+.|..|+..+ ...+...... -.++..+.
T Consensus 161 ~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~ 240 (287)
T PF03022_consen 161 SVLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLK 240 (287)
T ss_dssp HHHCSTT--HHH-HHHT-EEEEE---SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEE
T ss_pred HHhhCccccccccccccceeccccCCCCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceee
Q ss_pred EcC--CCCEEEEEeC
Q 003840 687 WDP--SGELLASVSE 699 (792)
Q Consensus 687 ~sp--dg~~Las~s~ 699 (792)
+.+ +|.+.+.+..
T Consensus 241 i~~~~~g~L~v~snr 255 (287)
T PF03022_consen 241 IDPEGDGYLWVLSNR 255 (287)
T ss_dssp E-T--TS-EEEEE-S
T ss_pred eccccCceEEEEECc
Done!